Proteins Positions within proteins Leading proteins Protein Fasta headers Localization prob Score diff PEP Score Delta score Score for localization Localization prob 821_JH_EV_Ubi Score diff 821_JH_EV_Ubi PEP 821_JH_EV_Ubi Score 821_JH_EV_Ubi Localization prob 821_JH_MUT_Ubi Score diff 821_JH_MUT_Ubi PEP 821_JH_MUT_Ubi Score 821_JH_MUT_Ubi Localization prob 821_JH_WT_Ubi Score diff 821_JH_WT_Ubi PEP 821_JH_WT_Ubi Score 821_JH_WT_Ubi Localization prob 902_JH_EV_Ubi_2 Score diff 902_JH_EV_Ubi_2 PEP 902_JH_EV_Ubi_2 Score 902_JH_EV_Ubi_2 Localization prob 902_JH_EV_Ubi_3 Score diff 902_JH_EV_Ubi_3 PEP 902_JH_EV_Ubi_3 Score 902_JH_EV_Ubi_3 Localization prob 902_JH_MUT_Ubi_2 Score diff 902_JH_MUT_Ubi_2 PEP 902_JH_MUT_Ubi_2 Score 902_JH_MUT_Ubi_2 Localization prob 902_JH_MUT_Ubi_3 Score diff 902_JH_MUT_Ubi_3 PEP 902_JH_MUT_Ubi_3 Score 902_JH_MUT_Ubi_3 Localization prob 902_JH_WT_Ubi_2 Score diff 902_JH_WT_Ubi_2 PEP 902_JH_WT_Ubi_2 Score 902_JH_WT_Ubi_2 Localization prob 902_JH_WT_Ubi_3 Score diff 902_JH_WT_Ubi_3 PEP 902_JH_WT_Ubi_3 Score 902_JH_WT_Ubi_3 Diagnostic peak Number of Oxidation (M) Amino acid Sequence window Modification window Peptide window coverage Oxidation (M) Probabilities Oxidation (M) Score diffs Position in peptide Charge Mass error [ppm] Intensity Intensity___1 Intensity___2 Intensity___3 Ratio mod/base Intensity 821_JH_EV_Ubi Intensity 821_JH_MUT_Ubi Intensity 821_JH_WT_Ubi Intensity 902_JH_EV_Ubi_2 Intensity 902_JH_EV_Ubi_3 Intensity 902_JH_MUT_Ubi_2 Intensity 902_JH_MUT_Ubi_3 Intensity 902_JH_WT_Ubi_2 Intensity 902_JH_WT_Ubi_3 Ratio mod/base 821_JH_EV_Ubi Ratio mod/base 821_JH_MUT_Ubi Ratio mod/base 821_JH_WT_Ubi Ratio mod/base 902_JH_EV_Ubi_2 Ratio mod/base 902_JH_EV_Ubi_3 Ratio mod/base 902_JH_MUT_Ubi_2 Ratio mod/base 902_JH_MUT_Ubi_3 Ratio mod/base 902_JH_WT_Ubi_2 Ratio mod/base 902_JH_WT_Ubi_3 Intensity 821_JH_EV_Ubi___1 Intensity 821_JH_EV_Ubi___2 Intensity 821_JH_EV_Ubi___3 Intensity 821_JH_MUT_Ubi___1 Intensity 821_JH_MUT_Ubi___2 Intensity 821_JH_MUT_Ubi___3 Intensity 821_JH_WT_Ubi___1 Intensity 821_JH_WT_Ubi___2 Intensity 821_JH_WT_Ubi___3 Intensity 902_JH_EV_Ubi_2___1 Intensity 902_JH_EV_Ubi_2___2 Intensity 902_JH_EV_Ubi_2___3 Intensity 902_JH_EV_Ubi_3___1 Intensity 902_JH_EV_Ubi_3___2 Intensity 902_JH_EV_Ubi_3___3 Intensity 902_JH_MUT_Ubi_2___1 Intensity 902_JH_MUT_Ubi_2___2 Intensity 902_JH_MUT_Ubi_2___3 Intensity 902_JH_MUT_Ubi_3___1 Intensity 902_JH_MUT_Ubi_3___2 Intensity 902_JH_MUT_Ubi_3___3 Intensity 902_JH_WT_Ubi_2___1 Intensity 902_JH_WT_Ubi_2___2 Intensity 902_JH_WT_Ubi_2___3 Intensity 902_JH_WT_Ubi_3___1 Intensity 902_JH_WT_Ubi_3___2 Intensity 902_JH_WT_Ubi_3___3 Reverse Potential contaminant id Protein group IDs Positions Position Peptide IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best localization evidence ID Best localization MS/MS ID Best localization raw file Best localization scan number Best score evidence ID Best score MS/MS ID Best score raw file Best score scan number Best PEP evidence ID Best PEP MS/MS ID Best PEP raw file Best PEP scan number CON__ENSEMBL:ENSBTAP00000024146 32 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1 126.885 4.33799E-11 140.28 106 126.88 1 140.277 4.33799E-11 140.28 1 126.885 1.91653E-08 126.88 1 M LLLPTDASVSGKPQYMVLVPSLLHTETPEKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPX PQYM(1)VLVPSLLHTETPEK PQYM(126.88)VLVPSLLHTETPEK 4 3 -0.92526 12742000 12742000 0 0 1.0976 0 0 0 0 0 0 0 6094800 6646900 NaN NaN 0 NaN NaN NaN NaN 3.3335 2.9962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6094800 0 0 6646900 0 0 + 0 0 32 32 3504 3999 11276;11277 11846;11847 11277 11847 20190902_JH_WT_Ubi_3 11587 11276 11846 20190902_JH_WT_Ubi_2 12082 11276 11846 20190902_JH_WT_Ubi_2 12082 CON__P00761 94 CON__P00761 CON__P00761 1 41.9862 8.14765E-07 122.44 59.379 41.986 1 56.1723 0.000757335 56.172 1 118.046 8.14765E-07 118.05 1 94.9729 7.12108E-05 94.973 1 41.9862 2.90673E-06 122.44 1 M ITHPNFNGNTLDNDIMLIKLSSPATLNSRVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPXX IITHPNFNGNTLDNDIM(1)LIKLSSPATLNSR IITHPNFNGNTLDNDIM(41.99)LIKLSSPATLNSR 17 4 0.10458 35638000 35638000 0 0 11.724 0 0 21012000 0 0 0 0 9414800 0 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 21012000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9414800 0 0 0 0 0 + 1 1 94 94 2164;2165 2467;2468 7160;7161;7162;7163;7164 7535;7536;7537;7538;7539 7164 7539 20190902_JH_WT_Ubi_3 12792 7162 7537 20190902_JH_WT_Ubi_3 11732 7160 7535 20190821_JH_WT_Ubi 10355 sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN 309;309;309;309;309;309 sp|P02538|K2C6A_HUMAN sp|P02538|K2C6A_HUMAN sp|P02538|K2C6A_HUMAN Keratin, type II cytoskeletal 6A OS=Homo sapiens OX=9606 GN=KRT6A PE=1 SV=3;sp|P48668|K2C6C_HUMAN Keratin, type II cytoskeletal 6C OS=Homo sapiens OX=9606 GN=KRT6C PE=1 SV=3;sp|P04259|K2C6B_HUMAN Keratin, type II cytoskeletal 6B OS=Ho 1 110.886 1.68403E-76 208.61 75.463 110.89 1 149.795 1.42627E-26 149.8 1 208.614 1.68403E-76 208.61 1 110.886 1.08094E-11 110.89 2 M EINFLRALYDAELSQMQTHISDTSVVLSMDN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ) XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP ALYDAELSQM(1)QTHISDTSVVLSM(1)DNNR ALYDAELSQM(110.89)QTHISDTSVVLSM(110.89)DNNR 10 3 0.51764 13585000 0 13585000 0 3.346 0 0 4642700 0 0 0 0 4011700 3631900 NaN NaN 1.1435 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4642700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4011700 0 0 3631900 0 + 2 3 309 309 222 251;253 729;730;731;733 798;799;800;802 733 802 20190902_JH_WT_Ubi_3 11476 730 799 20190902_JH_WT_Ubi_2 11598 730 799 20190902_JH_WT_Ubi_2 11598 sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN 322;322;322;322;322;322 sp|P02538|K2C6A_HUMAN sp|P02538|K2C6A_HUMAN sp|P02538|K2C6A_HUMAN Keratin, type II cytoskeletal 6A OS=Homo sapiens OX=9606 GN=KRT6A PE=1 SV=3;sp|P48668|K2C6C_HUMAN Keratin, type II cytoskeletal 6C OS=Homo sapiens OX=9606 GN=KRT6C PE=1 SV=3;sp|P04259|K2C6B_HUMAN Keratin, type II cytoskeletal 6B OS=Ho 1 110.886 1.68403E-76 208.61 75.463 110.89 1 149.795 1.42627E-26 149.8 1 208.614 1.68403E-76 208.61 1 110.886 1.08094E-11 110.89 2 M SQMQTHISDTSVVLSMDNNRNLDLDSIIAEV X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX ALYDAELSQM(1)QTHISDTSVVLSM(1)DNNR ALYDAELSQM(110.89)QTHISDTSVVLSM(110.89)DNNR 23 3 0.51764 13585000 0 13585000 0 3.346 0 0 4642700 0 0 0 0 4011700 3631900 NaN NaN 1.1435 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4642700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4011700 0 0 3631900 0 + 3 3 322 322 222 251;253 729;730;731;733 798;799;800;802 733 802 20190902_JH_WT_Ubi_3 11476 730 799 20190902_JH_WT_Ubi_2 11598 730 799 20190902_JH_WT_Ubi_2 11598 CON__P02769 571 CON__P02769 CON__P02769 1 49.6315 0.0315867 49.632 17.597 49.632 1 49.6315 0.0315867 49.632 M LKHKPKATEEQLKTVMENFVAFVDKCCAADD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX TVM(1)ENFVAFVDK TVM(49.63)ENFVAFVDK 3 2 1.359 4877500 4877500 0 0 NaN 0 0 4877500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4877500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4 5 571 571 4669 5296 14955 15713 14955 15713 20190821_JH_WT_Ubi 10341 14955 15713 20190821_JH_WT_Ubi 10341 14955 15713 20190821_JH_WT_Ubi 10341 sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931;CON__Q9H552 205;205;233;165;221 sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 PE=1 SV=7;sp|P05787-2|K2C8_HUMAN Isoform 2 of Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 1 59.3497 0.0259568 59.35 11.501 59.35 1 59.3497 0.0259568 59.35 M ENEFVLIKKDVDEAYMNKVELESRLEGLTDE X;X;X;X;X;X;X;GlyGly (K);GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPXXXXXXXXXXXXX DVDEAYM(1)NK DVDEAYM(59.35)NK 7 2 -0.94696 2291500 2291500 0 0 NaN 0 0 2291500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2291500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5 6 205 205 724 821 2268 2395 2268 2395 20190821_JH_WT_Ubi 5331 2268 2395 20190821_JH_WT_Ubi 5331 2268 2395 20190821_JH_WT_Ubi 5331 sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN 60;60;88 sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 PE=1 SV=7;sp|P05787-2|K2C8_HUMAN Isoform 2 of Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 1 40.9074 1.40955E-06 72.14 53.022 40.907 1 45.1795 0.000835734 45.179 1 45.1795 1.40955E-06 72.14 1 40.9074 0.00137927 40.907 1 M NFRGGLGGGYGGASGMGGITAVTVNQSLLSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP GGLGGGYGGASGM(1)GGITAVTVNQSLLSPLVLEVDPNIQAVR GGLGGGYGGASGM(40.91)GGITAVTVNQSLLSPLVLEVDPNIQAVR 13 3 -0.63981 33979000 33979000 0 0 1.7698 0 26622000 0 0 0 4141300 0 0 1144900 NaN 1.7946 0 NaN NaN NaN NaN NaN NaN 0 0 0 26622000 0 0 0 0 0 0 0 0 0 0 0 4141300 0 0 0 0 0 0 0 0 1144900 0 0 + 6 6 60 60 1490 1699 4761;4762;4763;4764 5006;5007;5008;5009 4764 5009 20190902_JH_WT_Ubi_3 15786 4762 5007 20190902_JH_MUT_Ubi_2 15207 4762 5007 20190902_JH_MUT_Ubi_2 15207 sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931 136;136;164;96 sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 PE=1 SV=7;sp|P05787-2|K2C8_HUMAN Isoform 2 of Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 1 43.5476 0.0225343 43.548 20.067 43.548 1 43.5476 0.0225343 43.548 2 M TKWSLLQQQKTARSNMDNMFESYINNLRRQL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPXX SNM(1)DNM(1)FESYINNLRR SNM(43.55)DNM(43.55)FESYINNLRR 3 3 1.1126 1113000 0 1113000 0 NaN 0 0 0 1113000 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1113000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7 6 136 136 4086 4638 12928 13555 12928 13555 20190902_JH_EV_Ubi_2 9355 12928 13555 20190902_JH_EV_Ubi_2 9355 12928 13555 20190902_JH_EV_Ubi_2 9355 sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931 139;139;167;99 sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 PE=1 SV=7;sp|P05787-2|K2C8_HUMAN Isoform 2 of Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 1 43.5476 0.0225343 43.548 20.067 43.548 1 43.5476 0.0225343 43.548 2 M SLLQQQKTARSNMDNMFESYINNLRRQLETL X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX SNM(1)DNM(1)FESYINNLRR SNM(43.55)DNM(43.55)FESYINNLRR 6 3 1.1126 1113000 0 1113000 0 NaN 0 0 0 1113000 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1113000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8 6 139 139 4086 4638 12928 13555 12928 13555 20190902_JH_EV_Ubi_2 9355 12928 13555 20190902_JH_EV_Ubi_2 9355 12928 13555 20190902_JH_EV_Ubi_2 9355 sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931;CON__H-INV:HIT000016045 189;189;217;149;22 sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN sp|P05787|K2C8_HUMAN Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 PE=1 SV=7;sp|P05787-2|K2C8_HUMAN Isoform 2 of Keratin, type II cytoskeletal 8 OS=Homo sapiens OX=9606 GN=KRT8 1 136.5 3.63531E-17 172.61 120.54 136.5 1 152.638 6.14977E-08 152.64 1 161.19 1.1618E-11 161.19 1 158.08 9.64271E-09 158.08 1 155.969 2.97581E-08 155.97 1 172.612 3.63531E-17 172.61 1 133.42 5.41198E-05 133.42 1 136.5 1.53246E-05 136.5 1 M DFKNKYEDEINKRTEMENEFVLIKKDVDEAY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX TEM(1)ENEFVLIKK TEM(136.5)ENEFVLIKK 3 3 0.52327 30564000 30564000 0 0 4.6082 3743800 0 0 4833100 5054700 4343700 2456400 5260200 4871700 2.4124 0 0 NaN NaN 3.1645 2.1117 NaN NaN 3743800 0 0 0 0 0 0 0 0 4833100 0 0 5054700 0 0 4343700 0 0 2456400 0 0 5260200 0 0 4871700 0 0 + 9 6 189 189 4314 4894 13649;13650;13651;13652;13653;13654;13655 14319;14320;14321;14322;14323;14324;14325 13655 14325 20190902_JH_WT_Ubi_3 8393 13653 14323 20190902_JH_MUT_Ubi_3 7215 13653 14323 20190902_JH_MUT_Ubi_3 7215 CON__P08727;sp|P08727|K1C19_HUMAN 291;291 CON__P08727;sp|P08727|K1C19_HUMAN CON__P08727 sp|P08727|K1C19_HUMAN Keratin, type I cytoskeletal 19 OS=Homo sapiens OX=9606 GN=KRT19 PE=1 SV=4 1 51.2519 0.000385642 114.87 61.42 51.252 1 109.145 0.000768464 109.15 1 52.4633 0.0364373 52.463 1 97.9573 0.00229757 97.957 1 66.0227 0.0183461 66.023 1 56.4136 0.0307862 56.414 1 70.4116 0.0133574 71.268 1 51.2519 0.000385642 114.87 1 M EELNREVAGHTEQLQMSRSEVTDLRRTLQGL X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X XXXXXPPPPPPPPPPPPPXXXXXXXXXXXXX EVAGHTEQLQM(1)SR EVAGHTEQLQM(51.25)SR 11 2 3.6386 132240000 132240000 0 0 NaN 9361400 2457800 16510000 23792000 21498000 0 0 18240000 38800000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 9361400 0 0 2457800 0 0 16510000 0 0 23792000 0 0 21498000 0 0 0 0 0 0 0 0 18240000 0 0 38800000 0 0 + 10 7;477 291;291 291 1126 1267;1268 3574;3575;3576;3577;3578;3579;3580;3581;3582 3758;3759;3760;3761;3762;3763;3764;3765;3766;3767 3582 3767 20190902_JH_WT_Ubi_3 5081 3580 3765 20190902_JH_WT_Ubi_3 4714 3580 3765 20190902_JH_WT_Ubi_3 4714 CON__P08727 84 CON__P08727 CON__P08727 1 99.9069 6.71031E-16 99.907 79.354 99.907 1 99.9069 6.71031E-16 99.907 1 M LTASDGLLAGNEKLTMQNLNDRLASYLDKVR X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX FVSSSSSGGYGGGYGGVLTASDGLLAGNEKLTM(1)QNLNDR FVSSSSSGGYGGGYGGVLTASDGLLAGNEKLTM(99.91)QNLNDR 33 3 -1.723 1107300 1107300 0 0 NaN 0 1107300 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1107300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11 7 84 84 1336 1516 4222 4440 4222 4440 20190821_JH_MUT_Ubi 11194 4222 4440 20190821_JH_MUT_Ubi 11194 4222 4440 20190821_JH_MUT_Ubi 11194 CON__P08727;sp|P08779|K1C16_HUMAN;CON__P08779;sp|P08727|K1C19_HUMAN 202;239;239;202 CON__P08727;sp|P08727|K1C19_HUMAN CON__P08727 sp|P08779|K1C16_HUMAN Keratin, type I cytoskeletal 16 OS=Homo sapiens OX=9606 GN=KRT16 PE=1 SV=4;sp|P08727|K1C19_HUMAN Keratin, type I cytoskeletal 19 OS=Homo sapiens OX=9606 GN=KRT19 PE=1 SV=4 1 160.025 4.9526E-20 164.8 54.488 160.03 1 97.8134 0.00376696 97.813 1 125.45 3.21045E-08 125.45 1 164.805 4.9526E-20 164.8 1 104.78 0.000108412 104.78 1 89.5016 0.000537902 89.502 1 160.025 8.73437E-20 160.03 1 M RRVLDELTLARTDLEMQIEGLKEELAYLKKN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX TDLEM(1)QIEGLKEELAYLK TDLEM(160.03)QIEGLKEELAYLK 5 3 0.048154 84705000 84705000 0 0 36.881 0 927020 2732800 0 0 571180 738450 3444700 0 NaN NaN 1.1899 NaN NaN NaN NaN NaN NaN 0 0 0 927020 0 0 2732800 0 0 0 0 0 0 0 0 571180 0 0 738450 0 0 3444700 0 0 0 0 0 + 12 7;477 202;202 202 4291;4292 4869;4870 13585;13586;13587;13588;13589;13590;13591 14251;14252;14253;14254;14255;14256;14257;14258 13591 14258 20190902_JH_WT_Ubi_2 15746 13590 14256 20190821_JH_WT_Ubi 14850 13590 14256 20190821_JH_WT_Ubi 14850 CON__P08727;CON__P19001;sp|P13646-2|K1C13_HUMAN;sp|P13646-3|K1C13_HUMAN;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__A2A4G1;sp|P13646|K1C13_HUMAN;CON__P13646-1;sp|P08727|K1C19_HUMAN 316;319;329;341;341;333;335;341;341;316 CON__P08727;sp|P08727|K1C19_HUMAN CON__P08727 sp|P13646-2|K1C13_HUMAN Isoform 2 of Keratin, type I cytoskeletal 13 OS=Homo sapiens OX=9606 GN=KRT13;sp|P13646-3|K1C13_HUMAN Isoform 3 of Keratin, type I cytoskeletal 13 OS=Homo sapiens OX=9606 GN=KRT13;sp|P13646|K1C13_HUMAN Keratin, type I cytoskeletal 1 1 92.4117 9.06781E-96 249.36 183.34 92.412 1 88.2784 1.04159E-65 228.49 1 92.4117 2.31085E-53 217.79 1 223.137 3.32041E-65 223.14 1 243.998 1.7882E-95 244 1 140.771 5.62793E-10 140.77 1 135.55 1.30345E-79 234.63 1 110.558 6.42503E-80 238.83 1 127.049 9.06781E-96 249.36 1 88.311 3.32041E-65 223.14 1 M RTLQGLEIELQSQLSMKAALEDTLAETEARF X;X;X;Deamidation (NQ);X;X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPPX TLQGLEIELQSQLSM(1)KAALEDTLAETEAR TLQGLEIELQSQLSM(92.41)KAALEDTLAETEAR 15 3 -1.5718 470710000 470710000 0 0 9.6382 81599000 100260000 70650000 10297000 16941000 59760000 46090000 27927000 46202000 13.142 4.5388 3.9857 NaN NaN 34.444 42.714 NaN NaN 81599000 0 0 100260000 0 0 70650000 0 0 10297000 0 0 16941000 0 0 59760000 0 0 46090000 0 0 27927000 0 0 46202000 0 0 + 13 7;477 316;316 316 4497;4498 5100;5102;5103;5104 14268;14269;14270;14271;14272;14273;14274;14275;14276;14282;14283;14284;14285;14286;14287;14288 14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14991;14992;14993;14994;14995;14996;14997 14288 14997 20190821_JH_MUT_Ubi 13478 14275 14984 20190902_JH_WT_Ubi_2 14135 14275 14984 20190902_JH_WT_Ubi_2 14135 CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1 206;206;206 CON__P08729;sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 OS=Homo sapiens OX=9606 GN=KRT7 PE=1 SV=5 1 96.6043 0.00135974 120.86 80.919 96.604 1 93.8392 0.00734021 93.839 1 105.359 0.00287448 105.36 1 64.6401 0.0273423 64.64 1 101.349 0.00375766 101.35 1 116.737 0.00145751 116.74 1 120.855 0.00135974 120.86 1 114.71 0.00150561 114.71 1 85.9235 0.0117371 85.924 1 96.6043 0.00574022 96.604 1 M ENEFVVLKKDVDAAYMSKVELEAKVDALNDE X;X;X;X;X;X;X;GlyGly (K);GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPXXXXXXXXXXXXX KDVDAAYM(1)SK KDVDAAYM(96.6)SK 8 3 0.25815 94536000 94536000 0 0 5.8429 3234500 6059300 6312700 6530200 4120400 19902000 13971000 13920000 20486000 NaN NaN 1.5983 7.0706 NaN 2.9635 NaN 3.0322 NaN 3234500 0 0 6059300 0 0 6312700 0 0 6530200 0 0 4120400 0 0 19902000 0 0 13971000 0 0 13920000 0 0 20486000 0 0 + 14 8;19 206;206 206 2328 2648 7652;7653;7654;7655;7656;7657;7658;7659;7660 8049;8050;8051;8052;8053;8054;8055;8056;8057 7660 8057 20190902_JH_WT_Ubi_3 4441 7656 8053 20190902_JH_MUT_Ubi_2 3973 7656 8053 20190902_JH_MUT_Ubi_2 3973 CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1 416;416;416 CON__P08729;sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 OS=Homo sapiens OX=9606 GN=KRT7 PE=1 SV=5 1 44.762 1.16436E-11 66.014 52.961 44.762 1 44.762 1.16436E-11 66.014 1;2 M SRLAGDGVGAVNISVMNSTGGSSSGGGIGLT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LAGDGVGAVNISVM(1)NSTGGSSSGGGIGLTLGGTM(1)GSNALSFSSSAGPGLLK LAGDGVGAVNISVM(44.76)NSTGGSSSGGGIGLTLGGTM(44.76)GSNALSFSSSAGPGLLK 14 4 0.98857 10139000 3011600 7127100 0 NaN 0 6888700 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 3011600 3877100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15 8;19 416;416 416 2500 2838;2839 8122;8123;8124 8539;8540;8541 8123 8540 20190821_JH_MUT_Ubi 13868 8122 8539 20190821_JH_MUT_Ubi 13856 8122 8539 20190821_JH_MUT_Ubi 13856 CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1 436;436;436 CON__P08729;sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 OS=Homo sapiens OX=9606 GN=KRT7 PE=1 SV=5 1 44.762 1.16436E-11 66.014 52.961 44.762 1 44.762 1.16436E-11 66.014 2 M GSSSGGGIGLTLGGTMGSNALSFSSSAGPGL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LAGDGVGAVNISVM(1)NSTGGSSSGGGIGLTLGGTM(1)GSNALSFSSSAGPGLLK LAGDGVGAVNISVM(44.76)NSTGGSSSGGGIGLTLGGTM(44.76)GSNALSFSSSAGPGLLK 34 4 0.98857 7127100 0 7127100 0 NaN 0 3877100 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 3877100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 16 8;19 436;436 436 2500 2838;2839 8122;8123 8539;8540 8123 8540 20190821_JH_MUT_Ubi 13868 8122 8539 20190821_JH_MUT_Ubi 13856 8122 8539 20190821_JH_MUT_Ubi 13856 CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1 249;249;249 CON__P08729;sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 OS=Homo sapiens OX=9606 GN=KRT7 PE=1 SV=5 1 202.439 2.10856E-64 202.44 176.04 202.44 1 56.3664 0.00236642 56.366 1 194.426 1.02626E-54 194.43 1 63.901 0.00384495 63.901 1 76.9803 8.89959E-05 76.98 1 135.169 3.09896E-20 135.17 1 202.439 2.10856E-64 202.44 1 M TELQSQISDTSVVLSMDNSRSLDLDGIIAEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX TLNETELTELQSQISDTSVVLSM(1)DNSR TLNETELTELQSQISDTSVVLSM(202.44)DNSR 23 3 0.77748 38356000 38356000 0 0 6.29 1708100 0 15586000 0 0 1118400 0 8023500 11920000 NaN 0 2.9753 NaN NaN NaN NaN NaN NaN 1708100 0 0 0 0 0 15586000 0 0 0 0 0 0 0 0 1118400 0 0 0 0 0 8023500 0 0 11920000 0 0 + 17 8;19 249;249 249 4489 5091 14244;14245;14246;14247;14248;14249 14949;14950;14951;14952;14953;14954;14955 14249 14954 20190902_JH_WT_Ubi_3 14734 14249 14954 20190902_JH_WT_Ubi_3 14734 14249 14954 20190902_JH_WT_Ubi_3 14734 CON__P15636 301 CON__P15636 CON__P15636 1 78.4508 2.79126E-43 177.69 142.55 78.451 1 177.688 2.79126E-43 177.69 1 123.544 3.19242E-15 123.54 1 78.4508 0.000131669 78.451 1 107.981 6.77165E-10 107.98 1 M RAPNTPASGANGDGSMSQTQSGSTVKATYAT X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX APNTPASGANGDGSM(1)SQTQSGSTVK APNTPASGANGDGSM(78.45)SQTQSGSTVK 15 3 1.8056 16739000 16739000 0 0 NaN 0 0 3907900 0 0 0 0 8380600 1143000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3907900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8380600 0 0 1143000 0 0 + 18 10 301 301 243 282;283;284 823;824;825;826;827 895;896;897;898;899;900;901 827 900 20190902_JH_WT_Ubi_2 6030 824 897 20190821_JH_WT_Ubi 4159 824 897 20190821_JH_WT_Ubi 4159 CON__P15636 255 CON__P15636 CON__P15636 1 59.2625 0.000482397 59.263 37.023 59.263 1 59.2625 0.000482397 59.263 1;2 M ACTGSLVNNTANDRKMYFLTAHHCGMGTAST X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)YFLTAHHCGM(1)GTASTAASIVVYWNYQNSTCR M(59.26)YFLTAHHCGM(59.26)GTASTAASIVVYWNYQNSTCR 1 4 0.052594 14334000 3084400 11250000 0 NaN 0 0 14334000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3084400 11250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 19 10 255 255 2988 3414;3415 9675;9676 10187;10188;10189 9675 10187 20190821_JH_WT_Ubi 10513 9675 10187 20190821_JH_WT_Ubi 10513 9676 10188 20190821_JH_WT_Ubi 11269 CON__P15636 265 CON__P15636 CON__P15636 1 59.2625 0.000658246 59.263 37.023 59.263 1 59.2625 0.000658246 59.263 2 M ANDRKMYFLTAHHCGMGTASTAASIVVYWNY X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP M(1)YFLTAHHCGM(1)GTASTAASIVVYWNYQNSTCR M(59.26)YFLTAHHCGM(59.26)GTASTAASIVVYWNYQNSTCR 11 4 0.052594 11250000 0 11250000 0 NaN 0 0 11250000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 11250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20 10 265 265 2988 3414;3415 9675 10187 9675 10187 20190821_JH_WT_Ubi 10513 9675 10187 20190821_JH_WT_Ubi 10513 9675 10187 20190821_JH_WT_Ubi 10513 sp|P35527|K1C9_HUMAN;CON__P35527 445;445 sp|P35527|K1C9_HUMAN sp|P35527|K1C9_HUMAN sp|P35527|K1C9_HUMAN Keratin, type I cytoskeletal 9 OS=Homo sapiens OX=9606 GN=KRT9 PE=1 SV=3 1 50.4245 0.0197969 50.425 7.2261 50.425 1 50.4245 0.0197969 50.425 1 M IECQNQEYSLLLSIKMRLEKEIETYHNLLEG X;X;X;Deamidation (NQ);Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX QEIECQNQEYSLLLSIKM(1)RLEK QEIECQNQEYSLLLSIKM(50.42)RLEK 18 3 -1.4423 2864800 2864800 0 0 NaN 0 0 0 0 2864800 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 2864800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 21 13 445 445 3615 4124 11614 12191 11614 12191 20190902_JH_EV_Ubi_3 8631 11614 12191 20190902_JH_EV_Ubi_3 8631 11614 12191 20190902_JH_EV_Ubi_3 8631 CON__Q04695;sp|Q04695|K1C17_HUMAN;CON__Q9QWL7 241;241;241 CON__Q04695 CON__Q04695 sp|Q04695|K1C17_HUMAN Keratin, type I cytoskeletal 17 OS=Homo sapiens OX=9606 GN=KRT17 PE=1 SV=2 1 66.5682 0.0107488 66.568 19.613 66.568 1 66.5682 0.0107488 66.568 1 M MNALRGQVGGEINVEMDAAPGVDLSRILNEM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPXXXXX GQVGGEINVEM(1)DAAPGVDLSR GQVGGEINVEM(66.57)DAAPGVDLSR 11 2 -1.056 2430900 2430900 0 0 NaN 0 0 2430900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2430900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22 15 241 241 1675 1908 5352 5633 5352 5633 20190821_JH_WT_Ubi 9386 5352 5633 20190821_JH_WT_Ubi 9386 5352 5633 20190821_JH_WT_Ubi 9386 CON__Q28107 1954 CON__Q28107 CON__Q28107 1 43.4077 0.0220201 43.408 8.1046 43.408 1 43.4077 0.0220201 43.408 1 M KLSTEFNPEPWIQVDMQKEVLLTGIQTQGAK X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX LSTEFNPEPWIQVDM(1)QK LSTEFNPEPWIQVDM(43.41)QK 15 3 -1.0214 4202700 4202700 0 0 NaN 0 0 0 0 0 0 0 4202700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4202700 0 0 0 0 0 + 23 18 1954 1954 2816 3192 9062 9534 9062 9534 20190902_JH_WT_Ubi_2 2646 9062 9534 20190902_JH_WT_Ubi_2 2646 9062 9534 20190902_JH_WT_Ubi_2 2646 sp|P08729|K2C7_HUMAN;CON__Q3KNV1 169;169 sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 OS=Homo sapiens OX=9606 GN=KRT7 PE=1 SV=5 1 182.235 4.09945E-18 182.23 96.271 182.23 1 105.252 0.00291031 105.25 1 146.503 1.45216E-06 146.5 1 182.235 4.09945E-18 182.23 1 140.628 1.37675E-05 140.63 1 127.52 0.000263836 127.52 1 140.142 1.47876E-05 140.14 1 124.207 0.00036753 124.21 1 M ALQVDGGRLEAELRSMQDVVEDFKNKYEDEI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX SM(1)QDVVEDFKNK SM(182.23)QDVVEDFKNK 2 3 -0.20817 50273000 50273000 0 0 NaN 2994200 4819600 9518500 2769300 7988000 13758000 6976400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2994200 0 0 4819600 0 0 9518500 0 0 2769300 0 0 7988000 0 0 13758000 0 0 6976400 0 0 0 0 0 0 0 0 + 24 19 169 169 4071;4072 4622;4623 12891;12892;12893;12894;12895;12896;12897;12898 13518;13519;13520;13521;13522;13523;13524;13525 12898 13525 20190821_JH_WT_Ubi 5491 12898 13525 20190821_JH_WT_Ubi 5491 12898 13525 20190821_JH_WT_Ubi 5491 REV__sp|O95251-3|KAT7_HUMAN REV__sp|O95251-3|KAT7_HUMAN 1 56.1471 0.0279621 56.147 22.84 56.147 1 56.1471 0.0279621 56.147 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPXXXXXXXXXXX VSLLYSFDILKM(1)GYGR VSLLYSFDILKM(56.15)GYGR 12 3 -0.0028443 5591400 5591400 0 0 NaN 0 0 5591400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5591400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25 23 124 124 5013 5690 16110 16926 16110 16926 20190821_JH_WT_Ubi 7685 16110 16926 20190821_JH_WT_Ubi 7685 16110 16926 20190821_JH_WT_Ubi 7685 REV__sp|P0CW27|CC166_HUMAN REV__sp|P0CW27|CC166_HUMAN 1 72.1522 0.0156358 72.152 31.27 72.152 1 67.385 0.0204218 67.385 1 72.1522 0.0156358 72.152 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPXXXXXXX VSDM(1)SSLVLSPR VSDM(72.15)SSLVLSPR 4 3 0.78742 3806400 3806400 0 0 NaN 0 869670 2936700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 869670 0 0 2936700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 26 25 98 98 5005 5680 16071;16072 16881;16882 16072 16882 20190821_JH_WT_Ubi 5183 16072 16882 20190821_JH_WT_Ubi 5183 16072 16882 20190821_JH_WT_Ubi 5183 REV__sp|Q06210-2|GFPT1_HUMAN REV__sp|Q06210-2|GFPT1_HUMAN 0.482556 2.40783 0.0197551 47.548 8.4042 47.548 0.482556 2.40783 0.0197551 47.548 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX DM(0.275)IIM(0.242)IVPM(0.483)KLDVLALPGK DM(-2.41)IIM(-2.98)IVPM(2.41)KLDVLALPGK 9 4 -1.9204 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 27 29 95 95 618 709 1943 2062 20190902_JH_MUT_Ubi_3 12074 1943 2062 20190902_JH_MUT_Ubi_3 12074 1943 2062 20190902_JH_MUT_Ubi_3 12074 REV__sp|Q5VWQ8-3|DAB2P_HUMAN REV__sp|Q5VWQ8-3|DAB2P_HUMAN 0.999995 52.8004 0.0323721 62.088 10.08 62.088 0.999995 52.8004 0.0323721 62.088 1 M X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPXXXXXXXXXXXXXX HMSKELQTLASM(1)R HM(-52.8)SKELQTLASM(52.8)R 12 3 1.8752 55181000 55181000 0 0 NaN 0 0 0 55181000 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 55181000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 28 32 12 12 1951 2218 6338 6669 6338 6669 20190902_JH_EV_Ubi_2 7827 6338 6669 20190902_JH_EV_Ubi_2 7827 6338 6669 20190902_JH_EV_Ubi_2 7827 REV__sp|Q6P179-3|ERAP2_HUMAN REV__sp|Q6P179-3|ERAP2_HUMAN 1 45.8637 0.0243105 46.964 15.137 45.864 1 46.9641 0.0243105 46.964 1 45.8637 0.0258224 45.864 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX VGEM(1)GLEIKLLKLEQK VGEM(45.86)GLEIKLLKLEQK 4 4 -1.3659 43036000 43036000 0 0 NaN 0 0 31908000 0 0 0 0 0 11129000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 31908000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11129000 0 0 + 29 33 116 116 4824 5473 15467;15468 16245;16246 15468 16246 20190902_JH_WT_Ubi_3 12784 15467 16245 20190821_JH_WT_Ubi 11688 15467 16245 20190821_JH_WT_Ubi 11688 REV__sp|Q8IUI8-2|CRLF3_HUMAN REV__sp|Q8IUI8-2|CRLF3_HUMAN 1 51.7707 0.0248465 51.771 8.9279 51.771 1 51.7707 0.0248465 51.771 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX LENEEGVGGLM(1)AIEGR LENEEGVGGLM(51.77)AIEGR 11 3 -2.5614 122260 122260 0 0 NaN 0 0 0 0 0 122260 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122260 0 0 0 0 0 0 0 0 0 0 0 + 30 36 326 326 2574 2925 8358 8788 8358 8788 20190902_JH_MUT_Ubi_2 1913 8358 8788 20190902_JH_MUT_Ubi_2 1913 8358 8788 20190902_JH_MUT_Ubi_2 1913 REV__sp|Q96HU8|DIRA2_HUMAN REV__sp|Q96HU8|DIRA2_HUMAN 1 60.1963 0.0215825 60.196 10.863 60.196 1 60.1963 0.0215825 60.196 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPXXXXXXX CNGVLM(1)IPISEVDK CNGVLM(60.2)IPISEVDK 6 3 -2.3307 8987400 8987400 0 0 NaN 0 0 0 0 0 0 0 0 8987400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8987400 0 0 + 31 44 83 83 353 416 1183 1270 1183 1270 20190902_JH_WT_Ubi_3 7793 1183 1270 20190902_JH_WT_Ubi_3 7793 1183 1270 20190902_JH_WT_Ubi_3 7793 REV__sp|Q9BX84-4|TRPM6_HUMAN REV__sp|Q9BX84-4|TRPM6_HUMAN 1 88.9479 0.0148801 88.948 27.595 88.948 1 88.9479 0.0148801 88.948 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPXXXXXXXXXXXXXX DIFSKVENM(1)K DIFSKVENM(88.95)K 9 3 -2.5458 6845300 6845300 0 0 NaN 6845300 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 6845300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 32 48 754 754 529 611 1711 1814 1711 1814 20190821_JH_EV_Ubi 3826 1711 1814 20190821_JH_EV_Ubi 3826 1711 1814 20190821_JH_EV_Ubi 3826 REV__sp|Q9H2G2-2|SLK_HUMAN REV__sp|Q9H2G2-2|SLK_HUMAN 1 56.5476 0.0276788 56.548 7.0818 56.548 1 56.5476 0.0276788 56.548 1 M X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPXXXXXXXXXXX LQNRYQM(1)QETK LQNRYQM(56.55)QETK 7 3 -1.373 1897400 1897400 0 0 NaN 0 0 0 0 0 0 0 1897400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1897400 0 0 0 0 0 + 33 50 187 187 2787 3163 9001 9471 9001 9471 20190902_JH_WT_Ubi_2 4053 9001 9471 20190902_JH_WT_Ubi_2 4053 9001 9471 20190902_JH_WT_Ubi_2 4053 REV__sp|Q9H6R0-2|DHX33_HUMAN REV__sp|Q9H6R0-2|DHX33_HUMAN 0.964703 14.3666 0.00985261 57.482 21.51 57.482 0.964703 14.3666 0.00985261 57.482 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX VM(0.035)ALLQLM(0.965)VSALNRCQIEPVTK VM(-14.37)ALLQLM(14.37)VSALNRCQIEPVTK 8 3 1.499 2616400 2616400 0 0 NaN 0 0 0 0 0 0 0 2616400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2616400 0 0 0 0 0 + 34 51 265 265 4939 5609 15878 16684 15878 16684 20190902_JH_WT_Ubi_2 11609 15878 16684 20190902_JH_WT_Ubi_2 11609 15878 16684 20190902_JH_WT_Ubi_2 11609 REV__sp|Q9P241-2|AT10D_HUMAN REV__sp|Q9P241-2|AT10D_HUMAN 1 58.1158 0.02056 58.116 17.388 58.116 1 58.1158 0.02056 58.116 1 M X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX SYLEPLQM(1)LTEASVK SYLEPLQM(58.12)LTEASVK 8 3 2.8687 1453400 1453400 0 0 NaN 0 0 0 0 0 0 1453400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1453400 0 0 0 0 0 0 0 0 + 35 58 251 251 4237 4812 13408 14068 13408 14068 20190902_JH_MUT_Ubi_3 3530 13408 14068 20190902_JH_MUT_Ubi_3 3530 13408 14068 20190902_JH_MUT_Ubi_3 3530 sp|A0A087WTH1|TM265_HUMAN 1 sp|A0A087WTH1|TM265_HUMAN sp|A0A087WTH1|TM265_HUMAN sp|A0A087WTH1|TM265_HUMAN Transmembrane protein 265 OS=Homo sapiens OX=9606 GN=TMEM265 PE=3 SV=1 1 71.756 1.69431E-05 85.884 58.342 71.756 1 85.8839 1.69431E-05 85.884 1 71.756 0.000377477 71.756 1 M _______________MEDEEKAVEILGNTEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EDEEKAVEILGNTEAAHPPSPIR M(71.76)EDEEKAVEILGNTEAAHPPSPIR 1 3 -0.65191 2289100 2289100 0 0 NaN 0 0 0 869970 1419200 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 869970 0 0 1419200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 64 1 1 2891 3283 9321;9322 9813;9814;9815 9322 9814 20190902_JH_EV_Ubi_3 10598 9321 9813 20190902_JH_EV_Ubi_2 10615 9321 9813 20190902_JH_EV_Ubi_2 10615 sp|A0A0J9YWL9|TX13C_HUMAN 553 sp|A0A0J9YWL9|TX13C_HUMAN sp|A0A0J9YWL9|TX13C_HUMAN sp|A0A0J9YWL9|TX13C_HUMAN Putative testis-expressed protein 13C OS=Homo sapiens OX=9606 GN=TEX13C PE=5 SV=1 0.96801 14.1383 0.0208277 49.528 10.945 49.528 0.96801 14.1383 0.0208277 49.528 1 M PLGDSRSHSLKKDPVMPQNMIPLEDSNSHSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP KDPVM(0.968)PQNM(0.032)IPLEDSNSHSLKK KDPVM(14.14)PQNM(-14.14)IPLEDSNSHSLKK 5 3 1.1348 4104900 4104900 0 0 NaN 0 0 0 0 0 0 0 0 4104900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4104900 0 0 37 65 553 553 2326 2646 7650 8047 7650 8047 20190902_JH_WT_Ubi_3 11033 7650 8047 20190902_JH_WT_Ubi_3 11033 7650 8047 20190902_JH_WT_Ubi_3 11033 sp|A0A1B0GTZ2|CC196_HUMAN 72 sp|A0A1B0GTZ2|CC196_HUMAN sp|A0A1B0GTZ2|CC196_HUMAN sp|A0A1B0GTZ2|CC196_HUMAN Putative coiled-coil domain-containing protein 196 OS=Homo sapiens OX=9606 GN=CCDC196 PE=5 SV=1 0.9442 12.386 0.00461433 59.339 17.889 59.339 0.9442 12.386 0.00461433 59.339 2 M KLMSNLEEKQRSLQIMRQIMAGKGCEESSVM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M) XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP SLQIM(0.944)RQIM(0.056)AGKGCEESSVM(1)ELLK SLQIM(12.39)RQIM(-12.39)AGKGCEESSVM(38.91)ELLK 5 3 -0.43731 3566400 0 3566400 0 NaN 3566400 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3566400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 66 72 72 4043 4591 12807 13431 12807 13431 20190821_JH_EV_Ubi 8686 12807 13431 20190821_JH_EV_Ubi 8686 12807 13431 20190821_JH_EV_Ubi 8686 sp|A0A1B0GTZ2|CC196_HUMAN 87 sp|A0A1B0GTZ2|CC196_HUMAN sp|A0A1B0GTZ2|CC196_HUMAN sp|A0A1B0GTZ2|CC196_HUMAN Putative coiled-coil domain-containing protein 196 OS=Homo sapiens OX=9606 GN=CCDC196 PE=5 SV=1 0.999757 38.9127 0.00461433 59.339 17.889 59.339 0.999757 38.9127 0.00461433 59.339 2 M MRQIMAGKGCEESSVMELLKEAEEMKQNLER Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX SLQIM(0.944)RQIM(0.056)AGKGCEESSVM(1)ELLK SLQIM(12.39)RQIM(-12.39)AGKGCEESSVM(38.91)ELLK 20 3 -0.43731 3566400 0 3566400 0 NaN 3566400 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3566400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39 66 87 87 4043 4591 12807 13431 12807 13431 20190821_JH_EV_Ubi 8686 12807 13431 20190821_JH_EV_Ubi 8686 12807 13431 20190821_JH_EV_Ubi 8686 sp|A0AVT1-2|UBA6_HUMAN;sp|A0AVT1|UBA6_HUMAN 435;909 sp|A0AVT1-2|UBA6_HUMAN sp|A0AVT1-2|UBA6_HUMAN sp|A0AVT1-2|UBA6_HUMAN Isoform 2 of Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens OX=9606 GN=UBA6;sp|A0AVT1|UBA6_HUMAN Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens OX=9606 GN=UBA6 PE=1 SV=1 1 47.1549 0.000110815 80.835 57.234 47.155 1 47.1549 0.0195468 47.155 1 75.4041 0.000202895 75.404 1 79.2358 0.000137931 79.236 1 71.5397 0.000590625 71.54 1 58.3324 0.00369299 58.332 1 68.192 0.000936387 68.192 1 80.8352 0.000110815 80.835 1 M IATTTATVSGLVALEMIKVTGGYPFEAYKNC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX IIPAIATTTATVSGLVALEM(1)IK IIPAIATTTATVSGLVALEM(47.15)IK 20 3 1.2598 21526000 21526000 0 0 NaN 0 3236600 9596600 0 0 984350 951340 3102500 3037400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 3236600 0 0 9596600 0 0 0 0 0 0 0 0 984350 0 0 951340 0 0 3102500 0 0 3037400 0 0 40 69 435 435 2063;2156 2358;2458 6846;6847;6848;6849;6850;6851;7136 7206;7207;7208;7209;7210;7211;7212;7213;7214;7509 7136 7509 20190821_JH_EV_Ubi 14539 6851 7213 20190902_JH_WT_Ubi_3 15184 6851 7213 20190902_JH_WT_Ubi_3 15184 sp|A1L0T0|ILVBL_HUMAN 138 sp|A1L0T0|ILVBL_HUMAN sp|A1L0T0|ILVBL_HUMAN sp|A1L0T0|ILVBL_HUMAN Acetolactate synthase-like protein OS=Homo sapiens OX=9606 GN=ILVBL PE=1 SV=2 1 85.3974 5.45021E-05 85.397 37.493 85.397 1 85.3974 5.45021E-05 85.397 1 M GPGLTNTVTAVKNAQMAQSPILLLGGAASTL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP NAQM(1)AQSPILLLGGAASTLLQNR NAQM(85.4)AQSPILLLGGAASTLLQNR 4 3 0.098542 534930 534930 0 0 NaN 0 0 0 0 0 0 0 0 534930 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 534930 0 0 41 70 138 138 3006 3436 9720 10241 9720 10241 20190902_JH_WT_Ubi_3 15559 9720 10241 20190902_JH_WT_Ubi_3 15559 9720 10241 20190902_JH_WT_Ubi_3 15559 sp|P0CI26|TR49C_HUMAN;sp|P0CI25|TRI49_HUMAN;sp|C9J1S8|TR49D_HUMAN;sp|A6NDI0|TR49B_HUMAN 219;219;219;219 sp|P0CI26|TR49C_HUMAN sp|P0CI26|TR49C_HUMAN sp|P0CI26|TR49C_HUMAN Tripartite motif-containing protein 49C OS=Homo sapiens OX=9606 GN=TRIM49C PE=2 SV=1;sp|P0CI25|TRI49_HUMAN Tripartite motif-containing protein 49 OS=Homo sapiens OX=9606 GN=TRIM49 PE=2 SV=1;sp|C9J1S8|TR49D_HUMAN Tripartite motif-conta 1 90.827 0.0151469 90.827 23.101 90.827 1 90.827 0.0151469 90.827 1 M KGKEIFHRLHLSKAKMAHRMEILRGMYEELN X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX LHLSKAKM(1)AHR LHLSKAKM(90.83)AHR 8 3 1.1544 2302600 2302600 0 0 NaN 0 2302600 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2302600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 84 219 219 2642 3003 8570 9011 8570 9011 20190821_JH_MUT_Ubi 6413 8570 9011 20190821_JH_MUT_Ubi 6413 8570 9011 20190821_JH_MUT_Ubi 6413 sp|A6NE01|F186A_HUMAN 988 sp|A6NE01|F186A_HUMAN sp|A6NE01|F186A_HUMAN sp|A6NE01|F186A_HUMAN Protein FAM186A OS=Homo sapiens OX=9606 GN=FAM186A PE=2 SV=3 0.986994 19.068 0.0224626 54.871 17.622 54.871 0.986994 19.068 0.0224626 54.871 M RGLEDLERQIKTKDQMQMKETQPKELEKMVI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPXXX DQM(0.987)QM(0.013)KETQPKELEK DQM(19.07)QM(-19.07)KETQPKELEK 3 4 -0.96903 21959000 21959000 0 0 NaN 21959000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 21959000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43 85 988 988 663 758 2081 2206 2081 2206 20190821_JH_EV_Ubi 3565 2081 2206 20190821_JH_EV_Ubi 3565 2081 2206 20190821_JH_EV_Ubi 3565 sp|P30046-2|DOPD_HUMAN;sp|P30046|DOPD_HUMAN;sp|A6NHG4|DDTL_HUMAN 48;48;48 sp|P30046-2|DOPD_HUMAN sp|P30046-2|DOPD_HUMAN sp|P30046-2|DOPD_HUMAN Isoform 2 of D-dopachrome decarboxylase OS=Homo sapiens OX=9606 GN=DDT;sp|P30046|DOPD_HUMAN D-dopachrome decarboxylase OS=Homo sapiens OX=9606 GN=DDT PE=1 SV=3;sp|A6NHG4|DDTL_HUMAN D-dopachrome decarboxylase-like protein OS=Homo sapi 1 66.9595 2.17576E-05 66.959 45.034 66.959 1 66.9595 2.17576E-05 66.959 1 M KPADRVNVTVRPGLAMALSGSTEPCAQLSIS X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP VNVTVRPGLAM(1)ALSGSTEPCAQLSISSIGVVGTAEDNR VNVTVRPGLAM(66.96)ALSGSTEPCAQLSISSIGVVGTAEDNR 11 3 3.9174 599360 599360 0 0 NaN 0 599360 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 599360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 87 48 48 4965 5635 15951 16760 15951 16760 20190821_JH_MUT_Ubi 12097 15951 16760 20190821_JH_MUT_Ubi 12097 15951 16760 20190821_JH_MUT_Ubi 12097 sp|A6NHL2-2|TBAL3_HUMAN;sp|A6NHL2|TBAL3_HUMAN 121;161 sp|A6NHL2-2|TBAL3_HUMAN sp|A6NHL2-2|TBAL3_HUMAN sp|A6NHL2-2|TBAL3_HUMAN Isoform 2 of Tubulin alpha chain-like 3 OS=Homo sapiens OX=9606 GN=TUBAL3;sp|A6NHL2|TBAL3_HUMAN Tubulin alpha chain-like 3 OS=Homo sapiens OX=9606 GN=TUBAL3 PE=1 SV=2 1 107.994 0.000151157 107.99 32.607 107.99 1 82.202 0.00265608 82.202 1 90.6885 0.00127443 90.689 1 107.994 0.000151157 107.99 M RSFGGGTGSGFTSLLMERLTGEYSRKTKLEF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SFGGGTGSGFTSLLM(1)ER SFGGGTGSGFTSLLM(107.99)ER 15 2 -0.29582 8631100 8631100 0 0 NaN 0 0 0 0 0 3032000 1549900 4049200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3032000 0 0 1549900 0 0 4049200 0 0 0 0 0 45 88 121 121 3907 4435 12354;12355;12356 12953;12954;12955 12356 12955 20190902_JH_WT_Ubi_2 12927 12356 12955 20190902_JH_WT_Ubi_2 12927 12356 12955 20190902_JH_WT_Ubi_2 12927 sp|A6NMZ7-2|CO6A6_HUMAN;sp|A6NMZ7|CO6A6_HUMAN 194;194 sp|A6NMZ7-2|CO6A6_HUMAN sp|A6NMZ7-2|CO6A6_HUMAN sp|A6NMZ7-2|CO6A6_HUMAN Isoform 2 of Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6;sp|A6NMZ7|CO6A6_HUMAN Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6 PE=1 SV=2 1 48.8475 0.0277989 48.848 6.4657 48.848 1 48.8475 0.0277989 48.848 2 M TSQFHFNLRTVRDLSMFSQNMTHIIKDVIKY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP DLSM(1)FSQNM(1)THIIKDVIKYK DLSM(48.85)FSQNM(48.85)THIIKDVIKYK 4 3 3.8281 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46 92 194 194 597 683 1872 1982 1872 1982 20190902_JH_WT_Ubi_3 14115 1872 1982 20190902_JH_WT_Ubi_3 14115 1872 1982 20190902_JH_WT_Ubi_3 14115 sp|A6NMZ7-2|CO6A6_HUMAN;sp|A6NMZ7|CO6A6_HUMAN 199;199 sp|A6NMZ7-2|CO6A6_HUMAN sp|A6NMZ7-2|CO6A6_HUMAN sp|A6NMZ7-2|CO6A6_HUMAN Isoform 2 of Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6;sp|A6NMZ7|CO6A6_HUMAN Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6 PE=1 SV=2 1 48.8475 0.0277989 48.848 6.4657 48.848 1 48.8475 0.0277989 48.848 2 M FNLRTVRDLSMFSQNMTHIIKDVIKYKEGAV X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPXXXX DLSM(1)FSQNM(1)THIIKDVIKYK DLSM(48.85)FSQNM(48.85)THIIKDVIKYK 9 3 3.8281 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 92 199 199 597 683 1872 1982 1872 1982 20190902_JH_WT_Ubi_3 14115 1872 1982 20190902_JH_WT_Ubi_3 14115 1872 1982 20190902_JH_WT_Ubi_3 14115 sp|A8MVJ9|HPF1L_HUMAN 171 sp|A8MVJ9|HPF1L_HUMAN sp|A8MVJ9|HPF1L_HUMAN sp|A8MVJ9|HPF1L_HUMAN Putative histone PARylation factor 1-like OS=Homo sapiens OX=9606 PE=5 SV=1 1 41.5297 0.0299444 41.53 7.0542 41.53 1 41.5297 0.0299444 41.53 1 M VPNGDNVFAAVKLYLMKKLKEVTDKKKTNLF X;X;Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX NCIIVPNGDNVFAAVKLYLM(1)KK NCIIVPNGDNVFAAVKLYLM(41.53)KK 20 3 -2.642 3223800 3223800 0 0 NaN 0 0 0 0 0 3223800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3223800 0 0 0 0 0 0 0 0 0 0 0 48 97 171 171 3010 3441 9732 10253 9732 10253 20190902_JH_MUT_Ubi_2 14723 9732 10253 20190902_JH_MUT_Ubi_2 14723 9732 10253 20190902_JH_MUT_Ubi_2 14723 sp|O00151|PDLI1_HUMAN 61 sp|O00151|PDLI1_HUMAN sp|O00151|PDLI1_HUMAN sp|O00151|PDLI1_HUMAN PDZ and LIM domain protein 1 OS=Homo sapiens OX=9606 GN=PDLIM1 PE=1 SV=4 1 65.1181 0.000438887 65.118 37.379 65.118 1 65.1181 0.000438887 65.118 M IGDVITAIDGENTSNMTHLEAQNRIKGCTDN X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX AALANLCIGDVITAIDGENTSNM(1)THLEAQNR AALANLCIGDVITAIDGENTSNM(65.12)THLEAQNR 23 3 4.3465 2724500 2724500 0 0 NaN 0 0 2724500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2724500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 106 61 61 26 28 89 97 89 97 20190821_JH_WT_Ubi 13531 89 97 20190821_JH_WT_Ubi 13531 89 97 20190821_JH_WT_Ubi 13531 sp|O00161|SNP23_HUMAN;sp|O00161-2|SNP23_HUMAN 44;44 sp|O00161|SNP23_HUMAN sp|O00161|SNP23_HUMAN sp|O00161|SNP23_HUMAN Synaptosomal-associated protein 23 OS=Homo sapiens OX=9606 GN=SNAP23 PE=1 SV=1;sp|O00161-2|SNP23_HUMAN Isoform SNAP-23b of Synaptosomal-associated protein 23 OS=Homo sapiens OX=9606 GN=SNAP23 1 76.8677 1.97976E-05 130.19 88.626 76.868 1 113.539 0.000235737 113.54 1 107.529 0.00075045 107.53 1 116.635 0.000175063 116.63 1 113.757 0.000231473 113.76 1 130.186 1.97976E-05 130.19 1 126.499 3.40879E-05 126.5 1 106.293 0.000908594 106.29 1 99.6687 0.00175576 99.669 1 76.8677 0.00920018 76.868 1 M GLAIESQDAGIKTITMLDEQKEQLNRIEEGL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX TITM(1)LDEQKEQLNR TITM(76.87)LDEQKEQLNR 4 3 -1.9218 76200000 76200000 0 0 2.888 7250300 3782000 6194100 8869600 8256800 6348400 5989000 14242000 15267000 2.8925 1.4066 0.75428 NaN NaN NaN NaN 2.2943 2.2551 7250300 0 0 3782000 0 0 6194100 0 0 8869600 0 0 8256800 0 0 6348400 0 0 5989000 0 0 14242000 0 0 15267000 0 0 50 109 44 44 4437 5032 14070;14071;14072;14073;14074;14075;14076;14077;14078 14770;14771;14772;14773;14774;14775;14776;14777;14778;14779 14078 14779 20190902_JH_WT_Ubi_3 7060 14072 14772 20190902_JH_EV_Ubi_3 5899 14072 14772 20190902_JH_EV_Ubi_3 5899 sp|O00193|SMAP_HUMAN 88 sp|O00193|SMAP_HUMAN sp|O00193|SMAP_HUMAN sp|O00193|SMAP_HUMAN Small acidic protein OS=Homo sapiens OX=9606 GN=SMAP PE=1 SV=1 1 58.9971 0.0116897 58.997 26.432 58.997 1 58.9971 0.0116897 58.997 1 M DKKINEELESQYQQSMDSKLSGRYRRHCGLG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX INEELESQYQQSM(1)DSKLSGR INEELESQYQQSM(59)DSKLSGR 13 3 -0.80306 1140900 1140900 0 0 NaN 0 0 0 0 0 1140900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1140900 0 0 0 0 0 0 0 0 0 0 0 51 113 88 88 2214 2523 7299 7677 7299 7677 20190902_JH_MUT_Ubi_2 7129 7299 7677 20190902_JH_MUT_Ubi_2 7129 7299 7677 20190902_JH_MUT_Ubi_2 7129 sp|O00203-3|AP3B1_HUMAN;sp|O00203|AP3B1_HUMAN 1007;1056 sp|O00203-3|AP3B1_HUMAN sp|O00203-3|AP3B1_HUMAN sp|O00203-3|AP3B1_HUMAN Isoform 2 of AP-3 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP3B1;sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP3B1 PE=1 SV=3 1 71.5134 0.00785636 72.681 18.338 71.513 1 51.009 0.0297771 51.009 1 72.6812 0.011795 72.681 1 71.5134 0.00785636 71.513 1 M NIHRFAAKTVHSGSLMLVTVELKEGSTAQLI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX TVHSGSLM(1)LVTVELK TVHSGSLM(71.51)LVTVELK 8 3 -3.5785 6329900 6329900 0 0 NaN 0 0 0 2043900 0 4286000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2043900 0 0 0 0 0 4286000 0 0 0 0 0 0 0 0 0 0 0 52 115 1007 1007 4660 5287 14924;14925;14926 15681;15682;15683 14926 15683 20190902_JH_MUT_Ubi_2 9523 14925 15682 20190902_JH_EV_Ubi_3 8737 14926 15683 20190902_JH_MUT_Ubi_2 9523 sp|O00238|BMR1B_HUMAN;sp|O00238-2|BMR1B_HUMAN 494;524 sp|O00238|BMR1B_HUMAN sp|O00238|BMR1B_HUMAN sp|O00238|BMR1B_HUMAN Bone morphogenetic protein receptor type-1B OS=Homo sapiens OX=9606 GN=BMPR1B PE=1 SV=1;sp|O00238-2|BMR1B_HUMAN Isoform 2 of Bone morphogenetic protein receptor type-1B OS=Homo sapiens OX=9606 GN=BMPR1B 1 65.3952 0.0257011 65.395 34.523 65.395 1 65.3952 0.0257011 65.395 1 M ASRLTALRVKKTLAKMSESQDIKL_______ X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX TLAKM(1)SESQDIK TLAKM(65.4)SESQDIK 5 3 -0.70495 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 118 494 494 4456 5054 14144 14849 14144 14849 20190902_JH_MUT_Ubi_3 3926 14144 14849 20190902_JH_MUT_Ubi_3 3926 14144 14849 20190902_JH_MUT_Ubi_3 3926 sp|O00244|ATOX1_HUMAN 10 sp|O00244|ATOX1_HUMAN sp|O00244|ATOX1_HUMAN sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 OS=Homo sapiens OX=9606 GN=ATOX1 PE=1 SV=1 1 76.5863 0.00144893 76.586 55.053 76.586 1 76.5863 0.00144893 76.586 1 M ______MPKHEFSVDMTCGGCAEAVSRVLNK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPXXXX HEFSVDM(1)TCGGCAEAVSR HEFSVDM(76.59)TCGGCAEAVSR 7 3 0.3919 1752300 1752300 0 0 0.85773 0 0 0 0 0 0 0 1752300 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1752300 0 0 0 0 0 54 119 10 10 1807 2051 5747 6051 5747 6051 20190902_JH_WT_Ubi_2 7610 5747 6051 20190902_JH_WT_Ubi_2 7610 5747 6051 20190902_JH_WT_Ubi_2 7610 sp|O00308|WWP2_HUMAN;sp|O00308-4|WWP2_HUMAN 114;114 sp|O00308|WWP2_HUMAN sp|O00308|WWP2_HUMAN sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens OX=9606 GN=WWP2 PE=1 SV=2;sp|O00308-4|WWP2_HUMAN Isoform 4 of NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens OX=9606 GN=WWP2 0.99859 28.0691 0.0122893 63.374 12.138 63.374 0.99859 28.0691 0.0122893 63.374 M ASVNLSNVLKNNGGKMENMQLTLNLQTENKG X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPX NNGGKM(0.999)ENM(0.001)QLTLNLQTENK NNGGKM(28.07)ENM(-28.07)QLTLNLQTENK 6 4 1.5445 1610600 1610600 0 0 NaN 0 0 1610600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1610600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 122 114 114 3172 3625 10206 10745 10206 10745 20190821_JH_WT_Ubi 8996 10206 10745 20190821_JH_WT_Ubi 8996 10206 10745 20190821_JH_WT_Ubi 8996 sp|O00400|ACATN_HUMAN 352 sp|O00400|ACATN_HUMAN sp|O00400|ACATN_HUMAN sp|O00400|ACATN_HUMAN Acetyl-coenzyme A transporter 1 OS=Homo sapiens OX=9606 GN=SLC33A1 PE=1 SV=1 1 46.595 0.0183244 46.595 38.209 46.595 1 46.595 0.0183244 46.595 1 M EEGVPKEHLALLAVPMVPLQIILPLIISKYT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPXX EHLALLAVPM(1)VPLQIILPLIISK EHLALLAVPM(46.6)VPLQIILPLIISK 10 3 -1.4233 753100 753100 0 0 NaN 0 0 753100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 753100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 123 352 352 923 1044 2927 3080 2927 3080 20190821_JH_WT_Ubi 16316 2927 3080 20190821_JH_WT_Ubi 16316 2927 3080 20190821_JH_WT_Ubi 16316 sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN 493;433;511 sp|O00410|IPO5_HUMAN sp|O00410|IPO5_HUMAN sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens OX=9606 GN=IPO5 PE=1 SV=4;sp|O00410-2|IPO5_HUMAN Isoform 2 of Importin-5 OS=Homo sapiens OX=9606 GN=IPO5;sp|O00410-3|IPO5_HUMAN Isoform 3 of Importin-5 OS=Homo sapiens OX=9606 GN=IPO5 1 137.904 0.000519644 137.9 38.769 137.9 1 91.0686 0.00229944 125.31 1 104.057 0.00519498 104.06 1 115.494 0.00345589 115.49 1 137.904 0.000519644 137.9 1 99.4417 0.00602912 99.442 1 71.692 0.022119 71.692 1 104.057 0.00519498 104.06 1 104.057 0.00519498 104.06 1 137.904 0.000519644 137.9 1 M LIPYLDNLVKHLHSIMVLKLQELIQKGTKLV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPXXXXXXXXXXXX HLHSIM(1)VLK HLHSIM(137.9)VLK 6 3 0.44966 109600000 109600000 0 0 5.9667 5376000 1564200 8668800 8748600 14287000 950220 4778700 29584000 34562000 NaN NaN NaN NaN 6.4397 NaN 2.2243 NaN 2.4685 5376000 0 0 1564200 0 0 8668800 0 0 8748600 0 0 14287000 0 0 950220 0 0 4778700 0 0 29584000 0 0 34562000 0 0 57 124 493 493 1907 2169 6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182 6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507 6182 6507 20190902_JH_WT_Ubi_3 5542 6182 6507 20190902_JH_WT_Ubi_3 5542 6182 6507 20190902_JH_WT_Ubi_3 5542 sp|O00422|SAP18_HUMAN 120 sp|O00422|SAP18_HUMAN sp|O00422|SAP18_HUMAN sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1 1 145.987 3.09336E-16 145.99 76.163 145.99 1 145.987 3.09336E-16 145.99 1 M EIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX GTDDSM(1)TLQSQK GTDDSM(145.99)TLQSQK 6 2 -0.85028 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58 126 120 120 1711 1950 5464 5751 5464 5751 20190821_JH_WT_Ubi 3448 5464 5751 20190821_JH_WT_Ubi 3448 5464 5751 20190821_JH_WT_Ubi 3448 sp|O00429-4|DNM1L_HUMAN;sp|O00429-5|DNM1L_HUMAN;sp|O00429-3|DNM1L_HUMAN;sp|O00429-2|DNM1L_HUMAN;sp|O00429|DNM1L_HUMAN;sp|O00429-8|DNM1L_HUMAN;sp|O00429-6|DNM1L_HUMAN;sp|O00429-7|DNM1L_HUMAN 482;482;482;482;482;495;495;279 sp|O00429-4|DNM1L_HUMAN sp|O00429-4|DNM1L_HUMAN sp|O00429-4|DNM1L_HUMAN Isoform 3 of Dynamin-1-like protein OS=Homo sapiens OX=9606 GN=DNM1L;sp|O00429-5|DNM1L_HUMAN Isoform 5 of Dynamin-1-like protein OS=Homo sapiens OX=9606 GN=DNM1L;sp|O00429-3|DNM1L_HUMAN Isoform 2 of Dynamin-1-like protein OS=Homo sa 1 44.7592 0.024579 44.759 28.253 44.759 1 44.7592 0.024579 44.759 M VVTCLLRKRLPVTNEMVHNLVAIELAYINTK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP RLPVTNEM(1)VHNLVAIELAYINTK RLPVTNEM(44.76)VHNLVAIELAYINTK 8 4 -0.29886 1187600 1187600 0 0 NaN 0 0 0 0 0 0 0 1187600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1187600 0 0 0 0 0 59 127 482 482 3769 4283 11935 12518 11935 12518 20190902_JH_WT_Ubi_2 13837 11935 12518 20190902_JH_WT_Ubi_2 13837 11935 12518 20190902_JH_WT_Ubi_2 13837 sp|O00567|NOP56_HUMAN 236 sp|O00567|NOP56_HUMAN sp|O00567|NOP56_HUMAN sp|O00567|NOP56_HUMAN Nucleolar protein 56 OS=Homo sapiens OX=9606 GN=NOP56 PE=1 SV=4 1 83.9477 0.00720236 83.948 14.123 83.948 1 83.9477 0.00720236 83.948 1 M RELNEDKLEKLEELTMDGAKAKAILDASRSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX LEELTM(1)DGAKAK LEELTM(83.95)DGAKAK 6 2 -1.2499 1880600 1880600 0 0 NaN 0 0 0 1880600 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1880600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60 133 236 236 2556 2904 8302 8727 8302 8727 20190902_JH_EV_Ubi_2 7620 8302 8727 20190902_JH_EV_Ubi_2 7620 8302 8727 20190902_JH_EV_Ubi_2 7620 sp|O00592-2|PODXL_HUMAN;sp|O00592|PODXL_HUMAN 484;516 sp|O00592-2|PODXL_HUMAN sp|O00592-2|PODXL_HUMAN sp|O00592-2|PODXL_HUMAN Isoform 2 of Podocalyxin OS=Homo sapiens OX=9606 GN=PODXL;sp|O00592|PODXL_HUMAN Podocalyxin OS=Homo sapiens OX=9606 GN=PODXL PE=1 SV=2 1 60.3817 0.000720206 74.525 53.791 60.382 1 74.5251 0.000720206 74.525 1 60.3817 0.010206 60.382 1 60.9506 0.00908108 60.951 1;2 M QTVENGYHDNPTLEVMETSSEMQEKKVVSLN X;X;X;X;Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX LTEELQTVENGYHDNPTLEVM(1)ETSSEM(1)QEKK LTEELQTVENGYHDNPTLEVM(60.38)ETSSEM(60.38)QEKK 21 4 1.5424 9474000 1345700 8128300 0 NaN 3803200 3001400 0 1364300 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3803200 0 1345700 1655700 0 0 0 0 0 1364300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 135 484 484 2822 3198;3199 9074;9075;9076;9077;9078 9547;9548;9549;9550;9551 9077 9550 20190821_JH_MUT_Ubi 7498 9075 9548 20190821_JH_EV_Ubi 8523 9075 9548 20190821_JH_EV_Ubi 8523 sp|O00592-2|PODXL_HUMAN;sp|O00592|PODXL_HUMAN 490;522 sp|O00592-2|PODXL_HUMAN sp|O00592-2|PODXL_HUMAN sp|O00592-2|PODXL_HUMAN Isoform 2 of Podocalyxin OS=Homo sapiens OX=9606 GN=PODXL;sp|O00592|PODXL_HUMAN Podocalyxin OS=Homo sapiens OX=9606 GN=PODXL PE=1 SV=2 1 60.3817 0.000720206 74.525 53.791 60.382 1 74.5251 0.000720206 74.525 1 60.3817 0.010206 60.382 1 60.9506 0.00908108 60.951 2 M YHDNPTLEVMETSSEMQEKKVVSLNGELGDS X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX LTEELQTVENGYHDNPTLEVM(1)ETSSEM(1)QEKK LTEELQTVENGYHDNPTLEVM(60.38)ETSSEM(60.38)QEKK 27 4 1.5424 8128300 0 8128300 0 NaN 3803200 1655700 0 1364300 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3803200 0 0 1655700 0 0 0 0 0 1364300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62 135 490 490 2822 3198;3199 9074;9075;9076;9077 9547;9548;9549;9550 9077 9550 20190821_JH_MUT_Ubi 7498 9075 9548 20190821_JH_EV_Ubi 8523 9075 9548 20190821_JH_EV_Ubi 8523 sp|O14618|CCS_HUMAN 78 sp|O14618|CCS_HUMAN sp|O14618|CCS_HUMAN sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase OS=Homo sapiens OX=9606 GN=CCS PE=1 SV=1 1 59.6613 0.00429553 59.661 19.757 59.661 1 59.6613 0.00429553 59.661 1 M QALLEGTGRQAVLKGMGSGQLQNLGAAVAIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP GM(1)GSGQLQNLGAAVAILGGPGTVQGVVR GM(59.66)GSGQLQNLGAAVAILGGPGTVQGVVR 2 3 -0.75022 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 145 78 78 1625 1851 5206 5481 5206 5481 20190902_JH_WT_Ubi_3 14619 5206 5481 20190902_JH_WT_Ubi_3 14619 5206 5481 20190902_JH_WT_Ubi_3 14619 sp|O14668|TMG1_HUMAN 210 sp|O14668|TMG1_HUMAN sp|O14668|TMG1_HUMAN sp|O14668|TMG1_HUMAN Transmembrane gamma-carboxyglutamic acid protein 1 OS=Homo sapiens OX=9606 GN=PRRG1 PE=1 SV=1 1 48.5758 0.00134795 48.576 27.109 48.576 1 42.3413 0.00375263 42.341 1 48.5758 0.00134795 48.576 1 M EYEDIVNSNSASAIPMVPVVTTIK_______ X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX SETEPHLDPPPEYEDIVNSNSASAIPM(1)VPVVTTIK SETEPHLDPPPEYEDIVNSNSASAIPM(48.58)VPVVTTIK 27 3 3.4651 2554300 2554300 0 0 NaN 0 0 0 0 0 0 0 1217300 1337000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1217300 0 0 1337000 0 0 64 147 210 210 3900 4428 12342;12343 12941;12942 12343 12942 20190902_JH_WT_Ubi_3 14021 12343 12942 20190902_JH_WT_Ubi_3 14021 12343 12942 20190902_JH_WT_Ubi_3 14021 sp|O14684|PTGES_HUMAN 8 sp|O14684|PTGES_HUMAN sp|O14684|PTGES_HUMAN sp|O14684|PTGES_HUMAN Prostaglandin E synthase OS=Homo sapiens OX=9606 GN=PTGES PE=1 SV=2 1 119.412 1.56511E-12 119.41 94.864 119.41 1 114.63 3.55394E-12 114.63 1 74.579 0.000251021 74.579 1 119.412 1.56511E-12 119.41 1 M ________MPAHSLVMSSPALPAFLLCSTLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP PAHSLVM(1)SSPALPAFLLCSTLLVIK PAHSLVM(119.41)SSPALPAFLLCSTLLVIK 7 3 -0.18542 32522000 32522000 0 0 4.0089 0 0 27242000 0 0 0 0 1685200 3595300 NaN NaN 3.358 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 27242000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1685200 0 0 3595300 0 0 65 148 8 8 3294 3763 10574;10575;10576 11125;11126;11127;11128 10576 11127 20190902_JH_WT_Ubi_3 15670 10576 11127 20190902_JH_WT_Ubi_3 15670 10576 11127 20190902_JH_WT_Ubi_3 15670 sp|O14684|PTGES_HUMAN 140 sp|O14684|PTGES_HUMAN sp|O14684|PTGES_HUMAN sp|O14684|PTGES_HUMAN Prostaglandin E synthase OS=Homo sapiens OX=9606 GN=PTGES PE=1 SV=2 1 52.4643 0.00698667 52.464 12.784 52.464 1 52.4643 0.00698667 52.464 1 M IRSVTYTLAQLPCASMALQILWEAARHL___ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPXXXXX SVTYTLAQLPCASM(1)ALQILWEAAR SVTYTLAQLPCASM(52.46)ALQILWEAAR 14 3 -0.3845 1010700 1010700 0 0 NaN 0 0 1010700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1010700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66 148 140 140 4223 4794 13350 14004 13350 14004 20190821_JH_WT_Ubi 16153 13350 14004 20190821_JH_WT_Ubi 16153 13350 14004 20190821_JH_WT_Ubi 16153 sp|O14735-3|CDIPT_HUMAN;sp|O14735|CDIPT_HUMAN 77;122 sp|O14735-3|CDIPT_HUMAN sp|O14735-3|CDIPT_HUMAN sp|O14735-3|CDIPT_HUMAN Isoform 3 of CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Homo sapiens OX=9606 GN=CDIPT;sp|O14735|CDIPT_HUMAN CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Homo sapiens OX=9606 GN=CDIPT PE=1 SV=1 1 55.1861 0.0143824 55.186 12.368 55.186 1 55.1861 0.0143824 55.186 1 M LHLHSSVVRGSESHKMIDLSGNPVLRIYYTS X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPXXXXX GSESHKM(1)IDLSGNPVLR GSESHKM(55.19)IDLSGNPVLR 7 4 1.1613 689270 689270 0 0 NaN 0 0 0 689270 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 689270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 149 77 77 1684 1919 5377 5660 5377 5660 20190902_JH_EV_Ubi_2 6321 5377 5660 20190902_JH_EV_Ubi_2 6321 5377 5660 20190902_JH_EV_Ubi_2 6321 sp|O14880|MGST3_HUMAN 43 sp|O14880|MGST3_HUMAN sp|O14880|MGST3_HUMAN sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase 3 OS=Homo sapiens OX=9606 GN=MGST3 PE=1 SV=1 1 57.4102 0.0170759 57.41 36.753 57.41 1 57.4102 0.0170759 57.41 1 M NVSKARKKYKVEYPIMYSTDPENGHIFNCIQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP VEYPIM(1)YSTDPENGHIFNCIQR VEYPIM(57.41)YSTDPENGHIFNCIQR 6 3 0.45949 3132900 3132900 0 0 NaN 0 0 0 0 0 0 0 3132900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3132900 0 0 0 0 0 68 158 43 43 4806 5453 15428 16204 15428 16204 20190902_JH_WT_Ubi_2 12596 15428 16204 20190902_JH_WT_Ubi_2 12596 15428 16204 20190902_JH_WT_Ubi_2 12596 sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN 89;89 sp|O14964-2|HGS_HUMAN sp|O14964-2|HGS_HUMAN sp|O14964-2|HGS_HUMAN Isoform 2 of Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens OX=9606 GN=HGS;sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens OX=9606 GN=HGS PE=1 SV=1 1 50.4929 5.06338E-05 100.01 68.868 50.493 1 82.7086 0.000309512 82.709 1 62.5893 0.00396943 62.589 1 44.5954 0.0231782 44.595 1 50.4929 0.0266272 50.493 1 81.723 0.000625613 81.723 1 95.365 9.72901E-05 95.365 1 100.006 5.06338E-05 100.01 1 M NCGQTVHDEVANKQTMEELKDLLKRQVEVNV X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX NCGQTVHDEVANKQTM(1)EELK NCGQTVHDEVANKQTM(50.49)EELK 16 3 2.4171 33770000 33770000 0 0 NaN 8742900 3261500 0 0 6143800 7606900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 8742900 0 0 3261500 0 0 0 0 0 0 0 0 6143800 0 0 7606900 0 0 0 0 0 0 0 0 0 0 0 69 163 89 89 3009 3439;3440 9724;9725;9726;9727;9728;9729;9730;9731 10245;10246;10247;10248;10249;10250;10251;10252 9731 10252 20190902_JH_MUT_Ubi_2 6058 9730 10251 20190902_JH_WT_Ubi_3 5881 9730 10251 20190902_JH_WT_Ubi_3 5881 sp|O15013-7|ARHGA_HUMAN;sp|O15013-4|ARHGA_HUMAN;sp|O15013-5|ARHGA_HUMAN;sp|O15013-6|ARHGA_HUMAN;sp|O15013|ARHGA_HUMAN 1092;1126;1130;1154;1155 sp|O15013-7|ARHGA_HUMAN sp|O15013-7|ARHGA_HUMAN sp|O15013-7|ARHGA_HUMAN Isoform 3 of Rho guanine nucleotide exchange factor 10 OS=Homo sapiens OX=9606 GN=ARHGEF10;sp|O15013-4|ARHGA_HUMAN Isoform 4 of Rho guanine nucleotide exchange factor 10 OS=Homo sapiens OX=9606 GN=ARHGEF10;sp|O15013-5|ARHGA_HUMAN Is 1 43.2605 0.00148366 71.685 29.347 43.261 1 71.6851 0.00148366 71.685 1 51.9713 0.0117713 51.971 1 43.2605 0.0253589 43.261 1 M LKHLQDINIATPVHNMLPGHQRLSVTSLLVC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX HLQDINIATPVHNM(1)LPGHQR HLQDINIATPVHNM(43.26)LPGHQR 14 4 0.050851 13226000 13226000 0 0 6.1916 5874000 0 0 4893000 2458900 0 0 0 0 2.7499 NaN NaN NaN NaN NaN NaN NaN NaN 5874000 0 0 0 0 0 0 0 0 4893000 0 0 2458900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 167 1092 1092 1926 2190 6247;6248;6249 6573;6574;6575 6249 6575 20190902_JH_EV_Ubi_3 6501 6247 6573 20190821_JH_EV_Ubi 6136 6247 6573 20190821_JH_EV_Ubi 6136 sp|O15027-2|SC16A_HUMAN;sp|O15027-4|SC16A_HUMAN;sp|O15027-3|SC16A_HUMAN;sp|O15027|SC16A_HUMAN;sp|O15027-5|SC16A_HUMAN 1673;1673;1673;1673;1673 sp|O15027-2|SC16A_HUMAN sp|O15027-2|SC16A_HUMAN sp|O15027-2|SC16A_HUMAN Isoform 2 of Protein transport protein Sec16A OS=Homo sapiens OX=9606 GN=SEC16A;sp|O15027-4|SC16A_HUMAN Isoform 4 of Protein transport protein Sec16A OS=Homo sapiens OX=9606 GN=SEC16A;sp|O15027-3|SC16A_HUMAN Isoform 3 of Protein tra 1 87.6519 1.82241E-06 87.652 54.627 87.652 1 87.6519 1.82241E-06 87.652 1 M QPHLYSPVLISQLVQMASQLRLFDPQLKEKP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX SILTQPHLYSPVLISQLVQM(1)ASQLR SILTQPHLYSPVLISQLVQM(87.65)ASQLR 20 3 -1.7193 3735700 3735700 0 0 NaN 0 0 3735700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3735700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 168 1673 1673 3971 4516 12593 13209 12593 13209 20190821_JH_WT_Ubi 15262 12593 13209 20190821_JH_WT_Ubi 15262 12593 13209 20190821_JH_WT_Ubi 15262 sp|O15126|SCAM1_HUMAN 308 sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 PE=1 SV=2 1 65.416 2.21621E-08 117.03 79.734 65.416 1 117.026 2.21621E-08 117.03 1 63.97 4.83893E-05 63.97 1 80.1159 2.58976E-07 80.116 1 67.3964 0.000321878 67.396 1 65.1596 0.00393036 65.16 1 65.416 0.00384801 65.416 1 M GASFEKAQQEFATGVMSNKTVQTAAANAAST X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP TTGASFEKAQQEFATGVM(1)SNK TTGASFEKAQQEFATGVM(65.42)SNK 18 3 1.4432 12322000 12322000 0 0 NaN 2097100 0 1967000 0 485480 905870 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2097100 0 0 0 0 0 1967000 0 0 0 0 0 485480 0 0 905870 0 0 0 0 0 0 0 0 0 0 0 72 173 308 308 258;4622 305;5246 890;891;892;893;14772;14773;14774;14775 967;968;969;970;971;15522;15523;15524;15525 14775 15525 20190902_JH_WT_Ubi_3 8921 14772 15522 20190821_JH_EV_Ubi 7453 14772 15522 20190821_JH_EV_Ubi 7453 sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN 53;53 sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 PE=1 SV=2;sp|O15126-2|SCAM1_HUMAN Isoform 2 of Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 1 41.9115 0.0090433 44.254 28.14 41.911 1 44.2541 0.0090433 44.254 1 41.9115 0.0111369 41.911 2 M NPFSDSRTPPPGGVKMPNVPNTQPAIMKPTE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)PNVPNTQPAIM(1)KPTEEHPAYTQIAK M(41.91)PNVPNTQPAIM(41.91)KPTEEHPAYTQIAK 1 4 0.40539 3123700 0 3123700 0 NaN 0 0 0 0 0 1281100 0 0 1842600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1281100 0 0 0 0 0 0 0 0 1842600 0 73 173 53 53 2954 3359 9503;9504 10003;10004 9504 10004 20190902_JH_WT_Ubi_3 8100 9503 10003 20190902_JH_MUT_Ubi_2 7380 9503 10003 20190902_JH_MUT_Ubi_2 7380 sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN 64;64 sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 PE=1 SV=2;sp|O15126-2|SCAM1_HUMAN Isoform 2 of Secretory carrier-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=SCAMP1 1 41.9115 0.0090433 44.254 28.14 41.911 1 44.2541 0.0090433 44.254 1 41.9115 0.0111369 41.911 2 M GGVKMPNVPNTQPAIMKPTEEHPAYTQIAKE X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPX M(1)PNVPNTQPAIM(1)KPTEEHPAYTQIAK M(41.91)PNVPNTQPAIM(41.91)KPTEEHPAYTQIAK 12 4 0.40539 3123700 0 3123700 0 NaN 0 0 0 0 0 1281100 0 0 1842600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1281100 0 0 0 0 0 0 0 0 1842600 0 74 173 64 64 2954 3359 9503;9504 10003;10004 9504 10004 20190902_JH_WT_Ubi_3 8100 9503 10003 20190902_JH_MUT_Ubi_2 7380 9503 10003 20190902_JH_MUT_Ubi_2 7380 sp|O15144|ARPC2_HUMAN 152 sp|O15144|ARPC2_HUMAN sp|O15144|ARPC2_HUMAN sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens OX=9606 GN=ARPC2 PE=1 SV=1 1 78.3345 0.0172537 78.334 52.775 78.334 1 78.3345 0.0172537 78.334 M EGENRAVIHYRDDETMYVESKKDRVTVVFST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX DDETM(1)YVESK DDETM(78.33)YVESK 5 2 0.14603 2677500 2677500 0 0 NaN 0 0 0 0 0 0 0 2677500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2677500 0 0 0 0 0 75 175 152 152 413 487 1345 1435 1345 1435 20190902_JH_WT_Ubi_2 6835 1345 1435 20190902_JH_WT_Ubi_2 6835 1345 1435 20190902_JH_WT_Ubi_2 6835 sp|O15145|ARPC3_HUMAN 95 sp|O15145|ARPC3_HUMAN sp|O15145|ARPC3_HUMAN sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3 1 83.8712 4.15544E-05 83.871 48.435 83.871 1 83.8712 4.15544E-05 83.871 1 M KKLQKCNSKSQGEKEMYTLGITNFPIPGEPG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP EM(1)YTLGITNFPIPGEPGFPLNAIYAK EM(83.87)YTLGITNFPIPGEPGFPLNAIYAK 2 3 -2.0516 1152700 1152700 0 0 NaN 0 0 0 0 0 0 0 1152700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1152700 0 0 0 0 0 76 176 95 95 1039 1169 3289 3457 3289 3457 20190902_JH_WT_Ubi_2 16480 3289 3457 20190902_JH_WT_Ubi_2 16480 3289 3457 20190902_JH_WT_Ubi_2 16480 sp|O15231-5|ZN185_HUMAN;sp|O15231-4|ZN185_HUMAN;sp|O15231-7|ZN185_HUMAN;sp|O15231|ZN185_HUMAN;sp|O15231-3|ZN185_HUMAN;sp|O15231-8|ZN185_HUMAN;sp|O15231-6|ZN185_HUMAN;sp|O15231-9|ZN185_HUMAN;sp|O15231-2|ZN185_HUMAN 444;606;636;665;666;668;697;303;428 sp|O15231-5|ZN185_HUMAN sp|O15231-5|ZN185_HUMAN sp|O15231-5|ZN185_HUMAN Isoform 5 of Zinc finger protein 185 OS=Homo sapiens OX=9606 GN=ZNF185;sp|O15231-4|ZN185_HUMAN Isoform 4 of Zinc finger protein 185 OS=Homo sapiens OX=9606 GN=ZNF185;sp|O15231-7|ZN185_HUMAN Isoform 7 of Zinc finger protein 185 OS=Ho 1 211.634 4.60888E-45 216.84 165.62 211.63 1 216.839 4.60888E-45 216.84 1 60.3636 0.0251355 60.364 1 185.299 4.90695E-25 185.3 1 182.411 8.23156E-19 182.41 1 184.87 5.12325E-25 184.87 1 211.634 1.59177E-44 211.63 1 M CCHEYCFKCGICSKPMGDLLDQIFIHRDTIH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPXXXX PM(1)GDLLDQIFIHR PM(211.63)GDLLDQIFIHR 2 3 1.8017 23607000 23607000 0 0 NaN 0 0 7772400 564160 0 3697400 2591800 4583800 4397300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7772400 0 0 564160 0 0 0 0 0 3697400 0 0 2591800 0 0 4583800 0 0 4397300 0 0 77 177 444 444 3461 3947 11109;11110;11111;11112;11113;11114 11674;11675;11676;11677;11678;11679 11114 11679 20190902_JH_WT_Ubi_3 13237 11112 11677 20190821_JH_WT_Ubi 12215 11112 11677 20190821_JH_WT_Ubi 12215 sp|O15382|BCAT2_HUMAN 105 sp|O15382|BCAT2_HUMAN sp|O15382|BCAT2_HUMAN sp|O15382|BCAT2_HUMAN Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=BCAT2 PE=1 SV=2 1 40.1769 0.0160454 40.177 15.779 40.177 1 40.1769 0.0160454 40.177 1 M PASSSLHYSLQLFEGMKAFKGKDQQVRLFRP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX IQPFQNLTLHPASSSLHYSLQLFEGM(1)K IQPFQNLTLHPASSSLHYSLQLFEGM(40.18)K 26 4 -0.37463 10351000 10351000 0 0 NaN 0 0 10351000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 10351000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 184 105 105 2245 2555 7363 7742 7363 7742 20190821_JH_WT_Ubi 12233 7363 7742 20190821_JH_WT_Ubi 12233 7363 7742 20190821_JH_WT_Ubi 12233 sp|O15439|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN 1272;1225 sp|O15439|MRP4_HUMAN sp|O15439|MRP4_HUMAN sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 OS=Homo sapiens OX=9606 GN=ABCC4 PE=1 SV=3;sp|O15439-2|MRP4_HUMAN Isoform 2 of Multidrug resistance-associated protein 4 OS=Homo sapiens OX=9606 GN=ABCC4 1 76.7606 1.19425E-14 152.32 108.02 76.761 1 148.969 1.78475E-14 148.97 1 152.317 1.19425E-14 152.32 1 143.828 2.97924E-11 143.83 1 109.544 3.66492E-05 109.54 1 123.139 6.83367E-08 123.14 1 132.501 8.82896E-09 132.5 1 101.055 0.000164527 101.05 1 76.7606 2.96656E-08 126.19 1 118.48 4.64254E-06 118.48 1 M EPYVLLQNKESLFYKMVQQLGKAEAAALTET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VQQLGKAEAAALTETAK M(76.76)VQQLGKAEAAALTETAK 1 3 1.569 76378000 76378000 0 0 1.8418 9277400 4582500 7950300 5338000 7097800 5909300 6636500 13482000 13834000 2.2783 1.2362 1.3787 2.5232 2.4619 1.1842 1.3951 2.0873 2.059 9277400 0 0 4582500 0 0 7950300 0 0 5338000 0 0 7097800 0 0 5909300 0 0 6636500 0 0 13482000 0 0 13834000 0 0 79 187 1272 1272 2984 3406;3408 9640;9641;9642;9643;9644;9645;9646;9647;9648;9658 10150;10151;10152;10153;10154;10155;10156;10157;10158;10168 9658 10168 20190902_JH_WT_Ubi_2 9447 9643 10153 20190821_JH_MUT_Ubi 6491 9643 10153 20190821_JH_MUT_Ubi 6491 sp|O43242|PSMD3_HUMAN 37 sp|O43242|PSMD3_HUMAN sp|O43242|PSMD3_HUMAN sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens OX=9606 GN=PSMD3 PE=1 SV=2 1 68.5623 3.31773E-07 99.923 54.554 68.562 1 99.9234 3.31773E-07 99.923 1 55.7215 6.33898E-05 55.722 1 89.7209 8.51141E-06 89.721 1 68.5623 6.60143E-06 68.562 1 M GEQEPPPPPAPQDVEMKEEAATGGGSTGEAD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP AKPPPGGGEQEPPPPPAPQDVEM(1)KEEAATGGGSTGEADGK AKPPPGGGEQEPPPPPAPQDVEM(68.56)KEEAATGGGSTGEADGK 23 4 -0.30468 9272600 9272600 0 0 NaN 0 0 1599400 0 0 0 0 1982100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1599400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1982100 0 0 0 0 0 80 196 37 37 186;187 213;214 616;617;618;619 673;674;675;676;677 619 677 20190902_JH_WT_Ubi_3 8036 616 673 20190821_JH_WT_Ubi 5485 616 673 20190821_JH_WT_Ubi 5485 sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN 22;22;22;22;22;22 sp|O43399|TPD54_HUMAN sp|O43399|TPD54_HUMAN sp|O43399|TPD54_HUMAN Tumor protein D54 OS=Homo sapiens OX=9606 GN=TPD52L2 PE=1 SV=2;sp|O43399-5|TPD54_HUMAN Isoform 5 of Tumor protein D54 OS=Homo sapiens OX=9606 GN=TPD52L2;sp|O43399-7|TPD54_HUMAN Isoform 7 of Tumor protein D54 OS=Homo sapiens OX=9606 GN 1 55.425 2.41061E-05 85.837 39.485 55.425 1 67.3534 2.41061E-05 85.837 1 57.0203 0.000163745 57.02 1 55.425 0.000196142 55.425 1;2 M DINLNSPNKGLLSDSMTDVPVDTGVAARTPA X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX M(1)DSAGQDINLNSPNKGLLSDSM(1)TDVPVDTGVAAR M(55.43)DSAGQDINLNSPNKGLLSDSM(55.43)TDVPVDTGVAAR 22 3 0.42397 4215000 1256400 2958700 0 2.0968 0 0 0 1798500 0 1735600 680890 0 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1256400 542190 0 0 0 0 0 1735600 0 0 680890 0 0 0 0 0 0 0 81 202 22 22 1598;2886 1821;3275 5124;9289;9290;9291 5393;9775;9776;9777 9291 9777 20190902_JH_MUT_Ubi_3 11648 5124 5393 20190902_JH_EV_Ubi_2 9816 9289 9775 20190902_JH_EV_Ubi_2 11190 sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN 1;1;1;1;1;1 sp|O43399|TPD54_HUMAN sp|O43399|TPD54_HUMAN sp|O43399|TPD54_HUMAN Tumor protein D54 OS=Homo sapiens OX=9606 GN=TPD52L2 PE=1 SV=2;sp|O43399-5|TPD54_HUMAN Isoform 5 of Tumor protein D54 OS=Homo sapiens OX=9606 GN=TPD52L2;sp|O43399-7|TPD54_HUMAN Isoform 7 of Tumor protein D54 OS=Homo sapiens OX=9606 GN 1 55.425 2.41061E-05 67.353 45.114 55.425 1 67.3534 2.41061E-05 67.353 1 57.0203 0.000163745 57.02 1 55.425 0.000196142 55.425 2 M _______________MDSAGQDINLNSPNKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DSAGQDINLNSPNKGLLSDSM(1)TDVPVDTGVAAR M(55.43)DSAGQDINLNSPNKGLLSDSM(55.43)TDVPVDTGVAAR 1 3 0.42397 2958700 0 2958700 0 NaN 0 0 0 542190 0 1735600 680890 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 542190 0 0 0 0 0 1735600 0 0 680890 0 0 0 0 0 0 0 82 202 1 1 2886 3275 9289;9290;9291 9775;9776;9777 9291 9777 20190902_JH_MUT_Ubi_3 11648 9289 9775 20190902_JH_EV_Ubi_2 11190 9289 9775 20190902_JH_EV_Ubi_2 11190 sp|O43491-2|E41L2_HUMAN;sp|O43491-3|E41L2_HUMAN;sp|O43491-4|E41L2_HUMAN;sp|O43491|E41L2_HUMAN 163;163;163;163 sp|O43491-2|E41L2_HUMAN sp|O43491-2|E41L2_HUMAN sp|O43491-2|E41L2_HUMAN Isoform 2 of Band 4.1-like protein 2 OS=Homo sapiens OX=9606 GN=EPB41L2;sp|O43491-3|E41L2_HUMAN Isoform 3 of Band 4.1-like protein 2 OS=Homo sapiens OX=9606 GN=EPB41L2;sp|O43491-4|E41L2_HUMAN Isoform 4 of Band 4.1-like protein 2 OS= 1 74.3379 0.00573302 74.338 32.5 74.338 1 71.2857 0.00848156 71.286 1 74.3379 0.00573302 74.338 1 M PSVSKEEKPSVSKVEMQPTELVSKEREEKVK X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPXXXXXXX PSVSKVEM(1)QPTELVSK PSVSKVEM(74.34)QPTELVSK 8 3 0.94919 5328300 5328300 0 0 NaN 2845200 0 0 2483100 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2845200 0 0 0 0 0 0 0 0 2483100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 205 163 163 3527 4023 11342;11343 11914;11915 11343 11915 20190902_JH_EV_Ubi_2 6333 11343 11915 20190902_JH_EV_Ubi_2 6333 11343 11915 20190902_JH_EV_Ubi_2 6333 sp|O43506|ADA20_HUMAN 628 sp|O43506|ADA20_HUMAN sp|O43506|ADA20_HUMAN sp|O43506|ADA20_HUMAN Disintegrin and metalloproteinase domain-containing protein 20 OS=Homo sapiens OX=9606 GN=ADAM20 PE=2 SV=2 1 60.1963 0.015441 60.196 21.428 60.196 1 60.1963 0.015441 60.196 1 M VCGPEKICIRKKCASMVHLSQACQPKTCNMR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPXXXXX KCASM(1)VHLSQACQPK KCASM(60.2)VHLSQACQPK 5 3 -1.5679 1341700 1341700 0 0 NaN 0 0 0 0 0 0 1341700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1341700 0 0 0 0 0 0 0 0 84 207 628 628 2321 2640 7629 8026 7629 8026 20190902_JH_MUT_Ubi_3 3675 7629 8026 20190902_JH_MUT_Ubi_3 3675 7629 8026 20190902_JH_MUT_Ubi_3 3675 sp|O43570-2|CAH12_HUMAN;sp|O43570|CAH12_HUMAN 337;348 sp|O43570-2|CAH12_HUMAN sp|O43570-2|CAH12_HUMAN sp|O43570-2|CAH12_HUMAN Isoform 2 of Carbonic anhydrase 12 OS=Homo sapiens OX=9606 GN=CA12;sp|O43570|CAH12_HUMAN Carbonic anhydrase 12 OS=Homo sapiens OX=9606 GN=CA12 PE=1 SV=1 1 104.221 0.00371493 104.22 73.036 104.22 1 104.221 0.00371493 104.22 1 M KKGDNKGVIYKPATKMETEAHA_________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX PATKM(1)ETEAHA PATKM(104.22)ETEAHA 5 3 2.9137 14278000 14278000 0 0 1.9205 0 0 0 0 0 0 0 14278000 0 NaN NaN NaN NaN NaN NaN NaN 4.9237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14278000 0 0 0 0 0 85 209 337 337 3306 3777 10607 11160 10607 11160 20190902_JH_WT_Ubi_2 2746 10607 11160 20190902_JH_WT_Ubi_2 2746 10607 11160 20190902_JH_WT_Ubi_2 2746 sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN 815;596;425 sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 PE=1 SV=2;sp|O43707-2|ACTN4_HUMAN Isoform ACTN4ISO of Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4;sp|O43707-3|ACTN4_HUMAN Isoform 3 of Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=AC 1 41.0171 8.89449E-17 136.59 108.39 41.017 1 122.655 8.11307E-11 122.65 1 136.592 8.89449E-17 136.59 1 41.0171 0.0242074 41.017 2 M DVENDRQGEAEFNRIMSLVDPNHSGLVTFQA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP IM(1)SLVDPNHSGLVTFQAFIDFM(1)SR IM(41.02)SLVDPNHSGLVTFQAFIDFM(41.02)SR 2 3 -1.0266 18644000 0 18644000 0 NaN 0 3716100 12697000 0 0 0 0 2231000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 3716100 0 0 12697000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2231000 0 0 0 0 86 214 815 815 2211 2519 7289;7290;7291 7667;7668;7669 7291 7669 20190902_JH_WT_Ubi_2 15888 7290 7668 20190821_JH_WT_Ubi 15048 7290 7668 20190821_JH_WT_Ubi 15048 sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN 835;616;445 sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 PE=1 SV=2;sp|O43707-2|ACTN4_HUMAN Isoform ACTN4ISO of Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4;sp|O43707-3|ACTN4_HUMAN Isoform 3 of Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=AC 1 41.0171 8.89449E-17 136.59 108.39 41.017 1 122.655 8.11307E-11 122.65 1 136.592 8.89449E-17 136.59 1 41.0171 0.0242074 41.017 2 M PNHSGLVTFQAFIDFMSRETTDTDTADQVIA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX IM(1)SLVDPNHSGLVTFQAFIDFM(1)SR IM(41.02)SLVDPNHSGLVTFQAFIDFM(41.02)SR 22 3 -1.0266 18644000 0 18644000 0 NaN 0 3716100 12697000 0 0 0 0 2231000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 3716100 0 0 12697000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2231000 0 0 0 0 87 214 835 835 2211 2519 7289;7290;7291 7667;7668;7669 7291 7669 20190902_JH_WT_Ubi_2 15888 7290 7668 20190821_JH_WT_Ubi 15048 7290 7668 20190821_JH_WT_Ubi 15048 sp|O43707|ACTN4_HUMAN 240 sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 PE=1 SV=2 1 85.2711 0.0039036 89.507 49.441 85.271 1 68.2616 0.0267227 68.262 1 71.8787 0.0189545 71.879 1 89.5068 0.0039036 89.507 1 85.2711 0.00565035 85.271 1 M NNAFEVAEKYLDIPKMLDAEDIVNTARPDEK X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LDAEDIVNTARPDEK M(85.27)LDAEDIVNTARPDEK 1 3 -0.55019 27294000 27294000 0 0 6.9497 0 0 5984400 0 2274100 0 0 9551900 9484100 NaN NaN NaN NaN NaN NaN NaN 2.4321 NaN 0 0 0 0 0 0 5984400 0 0 0 0 0 2274100 0 0 0 0 0 0 0 0 9551900 0 0 9484100 0 0 88 214 240 240 2932 3332 9455;9456;9457;9458 9953;9954;9955;9956 9458 9956 20190902_JH_WT_Ubi_3 9454 9457 9955 20190902_JH_WT_Ubi_2 9898 9457 9955 20190902_JH_WT_Ubi_2 9898 sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN 295;76 sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN sp|O43707|ACTN4_HUMAN Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 PE=1 SV=2;sp|O43707-2|ACTN4_HUMAN Isoform ACTN4ISO of Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 1 52.5991 0.00373204 72.898 54.664 52.599 1 44.132 0.0360331 44.132 1 72.8979 0.00373204 72.898 1 52.5991 0.020687 52.599 1 M RICKVLAVNQENEHLMEDYEKLASDLLEWIR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPXXXXXXXXXX VLAVNQENEHLM(1)EDYEK VLAVNQENEHLM(52.6)EDYEK 12 3 -0.5883 24362000 24362000 0 0 NaN 1721500 0 0 0 0 0 0 12658000 9982300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1721500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12658000 0 0 9982300 0 0 89 214 295 295 4884 5544 15693;15694;15695 16494;16495;16496 15695 16496 20190902_JH_WT_Ubi_3 7635 15694 16495 20190902_JH_WT_Ubi_2 8024 15694 16495 20190902_JH_WT_Ubi_2 8024 sp|O43709|BUD23_HUMAN;sp|O43709-3|BUD23_HUMAN 187;187 sp|O43709|BUD23_HUMAN sp|O43709|BUD23_HUMAN sp|O43709|BUD23_HUMAN Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens OX=9606 GN=BUD23 PE=1 SV=2;sp|O43709-3|BUD23_HUMAN Isoform 3 of Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens OX=9606 GN=BUD23 1 73.2794 0.000471964 91.355 62.37 73.279 1 61.2648 0.0288959 61.265 1 76.1579 0.00212747 76.158 1 91.3551 0.000471964 91.355 1 78.2444 0.00184346 78.244 1 73.2794 0.00348898 73.279 1 M ELITTQATKAGFSGGMVVDYPNSAKAKKFYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;GlyGly (K);X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPXXXX AGFSGGM(1)VVDYPNSAKAK AGFSGGM(73.28)VVDYPNSAKAK 7 3 -1.1012 4835400 4835400 0 0 NaN 702630 776120 0 1268700 0 948670 1139200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 702630 0 0 776120 0 0 0 0 0 1268700 0 0 0 0 0 948670 0 0 1139200 0 0 0 0 0 0 0 0 90 215 187 187 123 139 434;435;436;437;438 480;481;482;483;484;485 438 485 20190902_JH_MUT_Ubi_3 6298 435 481 20190902_JH_EV_Ubi_2 6305 435 481 20190902_JH_EV_Ubi_2 6305 sp|O43760|SNG2_HUMAN;sp|O43760-2|SNG2_HUMAN 1;1 sp|O43760|SNG2_HUMAN sp|O43760|SNG2_HUMAN sp|O43760|SNG2_HUMAN Synaptogyrin-2 OS=Homo sapiens OX=9606 GN=SYNGR2 PE=1 SV=1;sp|O43760-2|SNG2_HUMAN Isoform 2 of Synaptogyrin-2 OS=Homo sapiens OX=9606 GN=SYNGR2 1 61.5197 0.00266977 101.45 68.395 61.52 1 101.452 0.00266977 101.45 1 61.5197 0.00493283 61.52 1 M _______________MESGAYGAAKAGGSFD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ESGAYGAAKAGGSFDLR M(61.52)ESGAYGAAKAGGSFDLR 1 3 0.28986 8344200 8344200 0 0 NaN 7204000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 7204000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 218 1 1 2906 3300 9370;9371 9863;9864 9371 9864 20190902_JH_MUT_Ubi_3 8844 9370 9863 20190821_JH_EV_Ubi 8674 9370 9863 20190821_JH_EV_Ubi 8674 sp|O43837|IDH3B_HUMAN;sp|O43837-2|IDH3B_HUMAN;sp|O43837-3|IDH3B_HUMAN 344;344;192 sp|O43837|IDH3B_HUMAN sp|O43837|IDH3B_HUMAN sp|O43837|IDH3B_HUMAN Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3B PE=1 SV=2;sp|O43837-2|IDH3B_HUMAN Isoform A of Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3B;sp| 1 48.3512 0.0310432 48.351 20.942 48.351 1 48.3512 0.0310432 48.351 1 M ASNMLRHLNLEYHSSMIADAVKKVIKVGKVR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPXXXXXXXXX HLNLEYHSSM(1)IADAVK HLNLEYHSSM(48.35)IADAVK 10 3 0.54608 2610100 2610100 0 0 NaN 0 0 0 0 0 0 0 2610100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2610100 0 0 0 0 0 92 223 344 344 1922 2186 6235 6561 6235 6561 20190902_JH_WT_Ubi_2 8189 6235 6561 20190902_JH_WT_Ubi_2 8189 6235 6561 20190902_JH_WT_Ubi_2 8189 sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-15|CALU_HUMAN;sp|O43852-10|CALU_HUMAN;sp|O43852-6|CALU_HUMAN 188;196;188;196;37;188;188 sp|O43852|CALU_HUMAN sp|O43852|CALU_HUMAN sp|O43852|CALU_HUMAN Calumenin OS=Homo sapiens OX=9606 GN=CALU PE=1 SV=2;sp|O43852-3|CALU_HUMAN Isoform 3 of Calumenin OS=Homo sapiens OX=9606 GN=CALU;sp|O43852-2|CALU_HUMAN Isoform 2 of Calumenin OS=Homo sapiens OX=9606 GN=CALU;sp|O43852-4|CALU_HUMAN Isof 1 52.2654 0.0233661 53.001 17.238 52.265 1 53.001 0.0233661 53.001 1 46.9641 0.0336836 46.964 1 52.2654 0.0242513 52.265 1 M KEEFTAFLHPEEYDYMKDIVVQETMEDIDKN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX EEFTAFLHPEEYDYM(1)K EEFTAFLHPEEYDYM(52.27)K 15 3 0.18872 33104000 33104000 0 0 NaN 0 0 11484000 0 0 0 0 11232000 10389000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 11484000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11232000 0 0 10389000 0 0 93 225 188 188 853 963 2689;2690;2691 2829;2830;2831 2691 2831 20190902_JH_WT_Ubi_3 12062 2689 2829 20190821_JH_WT_Ubi 10710 2689 2829 20190821_JH_WT_Ubi 10710 sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-15|CALU_HUMAN 217;225;217;225;66 sp|O43852|CALU_HUMAN sp|O43852|CALU_HUMAN sp|O43852|CALU_HUMAN Calumenin OS=Homo sapiens OX=9606 GN=CALU PE=1 SV=2;sp|O43852-3|CALU_HUMAN Isoform 3 of Calumenin OS=Homo sapiens OX=9606 GN=CALU;sp|O43852-2|CALU_HUMAN Isoform 2 of Calumenin OS=Homo sapiens OX=9606 GN=CALU;sp|O43852-4|CALU_HUMAN Isof 1 70.5041 0.000166018 70.504 53.428 70.504 1 70.5041 0.000166018 70.504 1 M KNADGFIDLEEYIGDMYSHDGNTDEPEWVKT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPPX NADGFIDLEEYIGDM(1)YSHDGNTDEPEWVK NADGFIDLEEYIGDM(70.5)YSHDGNTDEPEWVK 15 3 0.16276 1253900 1253900 0 0 NaN 0 0 0 0 0 0 0 1253900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1253900 0 0 0 0 0 94 225 217 217 2991 3418 9682 10195;10196 9682 10195 20190902_JH_WT_Ubi_2 15550 9682 10195 20190902_JH_WT_Ubi_2 15550 9682 10195 20190902_JH_WT_Ubi_2 15550 sp|O43865-2|SAHH2_HUMAN;sp|O43865|SAHH2_HUMAN 350;397 sp|O43865-2|SAHH2_HUMAN sp|O43865-2|SAHH2_HUMAN sp|O43865-2|SAHH2_HUMAN Isoform 2 of S-adenosylhomocysteine hydrolase-like protein 1 OS=Homo sapiens OX=9606 GN=AHCYL1;sp|O43865|SAHH2_HUMAN S-adenosylhomocysteine hydrolase-like protein 1 OS=Homo sapiens OX=9606 GN=AHCYL1 PE=1 SV=2 1 83.9476 0.000143574 83.948 53.809 83.948 1 66.264 0.00250393 66.264 1 59.1541 0.00673102 59.154 1 83.9476 0.000143574 83.948 1 M REHLDRMKNSCIVCNMGHSNTEIDVTSLRTP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPXX NSCIVCNM(1)GHSNTEIDVTSLR NSCIVCNM(83.95)GHSNTEIDVTSLR 8 3 1.451 7751200 7751200 0 0 4.1798 0 0 2841200 0 0 0 0 2748100 2161800 NaN NaN 1.5321 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2841200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2748100 0 0 2161800 0 0 95 226 350 350 3210 3668 10332;10333;10334 10875;10876;10877 10334 10877 20190902_JH_WT_Ubi_3 8935 10334 10877 20190902_JH_WT_Ubi_3 8935 10334 10877 20190902_JH_WT_Ubi_3 8935 sp|O60232|SSA27_HUMAN 48 sp|O60232|SSA27_HUMAN sp|O60232|SSA27_HUMAN sp|O60232|SSA27_HUMAN Sjoegren syndrome/scleroderma autoantigen 1 OS=Homo sapiens OX=9606 GN=SSSCA1 PE=1 SV=1 1 105.527 7.74779E-09 127.3 69.801 105.53 1 48.5467 0.0321085 48.547 1 87.4287 0.000362301 87.429 1 115.583 3.54222E-06 115.58 1 127.297 7.74779E-09 127.3 1 105.527 5.48618E-05 105.53 1 M RISRLMGDYLLRGYRMLGETCADCGTILLQD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LGETCADCGTILLQDKQR M(105.53)LGETCADCGTILLQDKQR 1 3 -1.1485 7255000 7255000 0 0 NaN 852540 0 0 0 0 1023800 1023300 2053000 2302300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 852540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1023800 0 0 1023300 0 0 2053000 0 0 2302300 0 0 96 228 48 48 2936 3337 9464;9465;9466;9467;9468 9962;9963;9964;9965;9966 9468 9966 20190902_JH_WT_Ubi_3 9054 9467 9965 20190902_JH_WT_Ubi_2 9504 9467 9965 20190902_JH_WT_Ubi_2 9504 sp|O60245|PCDH7_HUMAN;sp|O60245-2|PCDH7_HUMAN 977;977 sp|O60245|PCDH7_HUMAN sp|O60245|PCDH7_HUMAN sp|O60245|PCDH7_HUMAN Protocadherin-7 OS=Homo sapiens OX=9606 GN=PCDH7 PE=1 SV=2;sp|O60245-2|PCDH7_HUMAN Isoform B of Protocadherin-7 OS=Homo sapiens OX=9606 GN=PCDH7 1 110.597 3.04945E-07 124.2 59.023 110.6 1 124.195 3.04945E-07 124.2 1 119.922 1.65133E-05 119.92 1 110.597 8.84777E-05 110.6 1 M QRYDSVNEKLSDSPSMGRYRSVNGGPGSPDL X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX YDSVNEKLSDSPSM(1)GR YDSVNEKLSDSPSM(110.6)GR 14 3 -0.42067 8483400 8483400 0 0 7.2951 2956900 0 0 2089000 3437400 0 0 0 0 NaN NaN NaN NaN NaN 0 0 NaN NaN 2956900 0 0 0 0 0 0 0 0 2089000 0 0 3437400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 229 977 977 5119 5821 16508;16509;16510 17350;17351;17352 16510 17352 20190902_JH_EV_Ubi_3 5434 16508 17350 20190821_JH_EV_Ubi 4803 16508 17350 20190821_JH_EV_Ubi 4803 sp|O60256-3|KPRB_HUMAN;sp|O60256|KPRB_HUMAN 87;87 sp|O60256-3|KPRB_HUMAN sp|O60256-3|KPRB_HUMAN sp|O60256-3|KPRB_HUMAN Isoform 3 of Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens OX=9606 GN=PRPSAP2;sp|O60256|KPRB_HUMAN Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens OX=9606 GN=PRPSAP2 PE=1 SV=1 1 48.8239 0.0247622 48.824 10.825 48.824 1 48.8239 0.0247622 48.824 2 M VFIIQTVSKDVNTTIMELLIMVYACKTSCAK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP DVNTTIM(1)ELLIM(1)VYACKTSCAK DVNTTIM(48.82)ELLIM(48.82)VYACKTSCAK 7 3 -0.89688 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 231 87 87 745 847 2352 2480 2352 2480 20190821_JH_EV_Ubi 10693 2352 2480 20190821_JH_EV_Ubi 10693 2352 2480 20190821_JH_EV_Ubi 10693 sp|O60256-3|KPRB_HUMAN;sp|O60256|KPRB_HUMAN 92;92 sp|O60256-3|KPRB_HUMAN sp|O60256-3|KPRB_HUMAN sp|O60256-3|KPRB_HUMAN Isoform 3 of Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens OX=9606 GN=PRPSAP2;sp|O60256|KPRB_HUMAN Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens OX=9606 GN=PRPSAP2 PE=1 SV=1 1 48.8239 0.0247622 48.824 10.825 48.824 1 48.8239 0.0247622 48.824 2 M TVSKDVNTTIMELLIMVYACKTSCAKSIIGV X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPXXXXX DVNTTIM(1)ELLIM(1)VYACKTSCAK DVNTTIM(48.82)ELLIM(48.82)VYACKTSCAK 12 3 -0.89688 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 231 92 92 745 847 2352 2480 2352 2480 20190821_JH_EV_Ubi 10693 2352 2480 20190821_JH_EV_Ubi 10693 2352 2480 20190821_JH_EV_Ubi 10693 sp|O60266-2|ADCY3_HUMAN;sp|O60266|ADCY3_HUMAN 401;814 sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN Isoform 2 of Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3;sp|O60266|ADCY3_HUMAN Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3 PE=1 SV=3 1 44.105 0.0231121 44.105 16.61 44.105 1 44.105 0.0231121 44.105 2 M FDEYDHKRFREHDLPMVALEQMQGFNPGLNG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP EHDLPM(1)VALEQM(1)QGFNPGLNGTDR EHDLPM(44.1)VALEQM(44.1)QGFNPGLNGTDR 6 3 -0.86255 1465200 0 1465200 0 NaN 0 1465200 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1465200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 233 401 401 917 1037 2910 3063 2910 3063 20190821_JH_MUT_Ubi 6953 2910 3063 20190821_JH_MUT_Ubi 6953 2910 3063 20190821_JH_MUT_Ubi 6953 sp|O60266-2|ADCY3_HUMAN;sp|O60266|ADCY3_HUMAN 407;820 sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN Isoform 2 of Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3;sp|O60266|ADCY3_HUMAN Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3 PE=1 SV=3 1 44.105 0.0231121 44.105 16.61 44.105 1 44.105 0.0231121 44.105 2 M KRFREHDLPMVALEQMQGFNPGLNGTDRLPL X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPXXX EHDLPM(1)VALEQM(1)QGFNPGLNGTDR EHDLPM(44.1)VALEQM(44.1)QGFNPGLNGTDR 12 3 -0.86255 1465200 0 1465200 0 NaN 0 1465200 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1465200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101 233 407 407 917 1037 2910 3063 2910 3063 20190821_JH_MUT_Ubi 6953 2910 3063 20190821_JH_MUT_Ubi 6953 2910 3063 20190821_JH_MUT_Ubi 6953 sp|O60266-2|ADCY3_HUMAN;sp|O60266|ADCY3_HUMAN 569;982 sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN sp|O60266-2|ADCY3_HUMAN Isoform 2 of Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3;sp|O60266|ADCY3_HUMAN Adenylate cyclase type 3 OS=Homo sapiens OX=9606 GN=ADCY3 PE=1 SV=3 1 65.3868 0.00155522 65.387 42.854 65.387 1 65.3868 0.00155522 65.387 1 M KFRVITKIKTIGSTYMAASGVTPDVNTNGFA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP TIGSTYM(1)AASGVTPDVNTNGFASSNKEDK TIGSTYM(65.39)AASGVTPDVNTNGFASSNKEDK 7 3 0.12583 759580 759580 0 0 NaN 0 0 0 759580 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 759580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102 233 569 569 4420 5015 14018 14716 14018 14716 20190902_JH_EV_Ubi_2 8273 14018 14716 20190902_JH_EV_Ubi_2 8273 14018 14716 20190902_JH_EV_Ubi_2 8273 sp|O60292|SI1L3_HUMAN 1520 sp|O60292|SI1L3_HUMAN sp|O60292|SI1L3_HUMAN sp|O60292|SI1L3_HUMAN Signal-induced proliferation-associated 1-like protein 3 OS=Homo sapiens OX=9606 GN=SIPA1L3 PE=1 SV=3 1 41.7598 0.0307364 41.76 7.6116 41.76 1 41.7598 0.0307364 41.76 1 M NYKSTIEDDLKKLIIMDNLGPEQERDTGQSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP LIIM(1)DNLGPEQERDTGQSPQKGLQR LIIM(41.76)DNLGPEQERDTGQSPQKGLQR 4 3 1.1954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN 0 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103 237 1520 1520 2656 3020 8637 9082 8637 9082 20190821_JH_WT_Ubi 8691 8637 9082 20190821_JH_WT_Ubi 8691 8637 9082 20190821_JH_WT_Ubi 8691 sp|O60423-1|AT8B3_HUMAN;sp|O60423|AT8B3_HUMAN 54;54 sp|O60423-1|AT8B3_HUMAN sp|O60423-1|AT8B3_HUMAN sp|O60423-1|AT8B3_HUMAN Isoform 2 of Phospholipid-transporting ATPase IK OS=Homo sapiens OX=9606 GN=ATP8B3;sp|O60423|AT8B3_HUMAN Phospholipid-transporting ATPase IK OS=Homo sapiens OX=9606 GN=ATP8B3 PE=2 SV=4 1 60.7599 0.0320697 60.76 25.654 60.76 1 60.7599 0.0320697 60.76 M GPAGIRGGETVIRAGMGDSPGRGAPERRHKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPXXXXXXXXX AGM(1)GDSPGR AGM(60.76)GDSPGR 3 2 -0.40472 410770 410770 0 0 NaN 0 0 0 0 0 0 0 410770 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 410770 0 0 0 0 0 104 243 54 54 132 150 458 506 458 506 20190902_JH_WT_Ubi_2 4197 458 506 20190902_JH_WT_Ubi_2 4197 458 506 20190902_JH_WT_Ubi_2 4197 sp|O60437|PEPL_HUMAN 763 sp|O60437|PEPL_HUMAN sp|O60437|PEPL_HUMAN sp|O60437|PEPL_HUMAN Periplakin OS=Homo sapiens OX=9606 GN=PPL PE=1 SV=4 1 51.5858 0.0126571 51.586 11.703 51.586 1 51.5858 0.0126571 51.586 1 M SIPSYEPQETDSLSQMETKLKNQKNLLDEIA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX GHDHVLQFLVSIPSYEPQETDSLSQM(1)ETK GHDHVLQFLVSIPSYEPQETDSLSQM(51.59)ETK 26 3 1.3237 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 245 763 763 1511 1723 4846 5098 4846 5098 20190821_JH_WT_Ubi 12169 4846 5098 20190821_JH_WT_Ubi 12169 4846 5098 20190821_JH_WT_Ubi 12169 sp|O60437|PEPL_HUMAN 658 sp|O60437|PEPL_HUMAN sp|O60437|PEPL_HUMAN sp|O60437|PEPL_HUMAN Periplakin OS=Homo sapiens OX=9606 GN=PPL PE=1 SV=4 1 51.9785 0.0206294 51.979 25.861 51.979 1 51.9785 0.0206294 51.979 1 M ESSRVLDSKGQELAAMACELQAQKSLLGEVE X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPXXXXXXX GQELAAM(1)ACELQAQK GQELAAM(51.98)ACELQAQK 7 2 -3.0246 567480 567480 0 0 NaN 0 0 0 0 0 567480 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567480 0 0 0 0 0 0 0 0 0 0 0 106 245 658 658 1663 1893 5311 5592 5311 5592 20190902_JH_MUT_Ubi_2 7310 5311 5592 20190902_JH_MUT_Ubi_2 7310 5311 5592 20190902_JH_MUT_Ubi_2 7310 sp|O60469-2|DSCAM_HUMAN;sp|O60469|DSCAM_HUMAN 375;375 sp|O60469-2|DSCAM_HUMAN sp|O60469-2|DSCAM_HUMAN sp|O60469-2|DSCAM_HUMAN Isoform Short of Down syndrome cell adhesion molecule OS=Homo sapiens OX=9606 GN=DSCAM;sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens OX=9606 GN=DSCAM PE=1 SV=2 0.928787 11.1535 0.0211905 46.68 19.655 46.68 0.928787 11.1535 0.0211905 46.68 1 M VRITGINHENLIMDHMVKSDGGAYQCFVRKD X;X;X;X;X;X;Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX ITGINHENLIM(0.071)DHM(0.929)VK ITGINHENLIM(-11.15)DHM(11.15)VK 14 3 0.7556 6521200 6521200 0 0 NaN 6521200 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 6521200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107 246 375 375 2274 2587 7457 7837 7457 7837 20190821_JH_EV_Ubi 8857 7457 7837 20190821_JH_EV_Ubi 8857 7457 7837 20190821_JH_EV_Ubi 8857 sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN 890;884;836;783;789;830;890;783;884;836;830;789;561;567;561;567 sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN Isoform 1AC of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-5|CTND1_HUMAN Isoform 1A of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-11|CTND1_HUMAN Isoform 2AC of Catenin delta-1 OS=Homo sapiens OX=9606 1 158.141 5.27042E-33 187 152.15 158.14 1 50.8268 2.1952E-20 143.09 1 136.342 4.74149E-10 136.34 1 46.8389 0.0261294 46.839 1 56.407 1.77796E-12 116.74 1 48.2163 0.000134894 83.059 1 187.004 5.27042E-33 187 1 158.141 8.18348E-15 158.14 1 79.1771 8.33232E-05 79.177 1 76.6679 0.000108844 76.668 1;2 M RNQKSDKKPDREEIQMSNMGSNTKSLDNNYS X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);Oxidation (M);X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;Deamidation (NQ);Deamidation (NQ);X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP KPDREEIQM(1)SNM(1)GSNTK KPDREEIQM(158.14)SNM(158.14)GSNTK 9 3 -0.85527 62273000 9627500 52645000 0 15.802 4926200 4785900 0 6340200 9548200 4428900 5286100 2802500 2424500 4.3792 3.1019 NaN NaN NaN 3.479 NaN NaN NaN 1410300 3515900 0 1522200 3263700 0 0 0 0 1109400 5230800 0 0 9548200 0 1901800 2527100 0 1667600 3618500 0 0 2802500 0 0 2424500 0 108 257 890 890 856;2414 966;967;969;970;971;972;2744;2745 2699;2700;2701;2702;2703;2704;2705;2706;2707;2709;2710;2711;2712;2713;2718;2720;2724;2725;2726;2727;2728;2729;7889;7890;7891;7892;7893;7894;7895 2839;2840;2841;2842;2843;2844;2845;2846;2847;2849;2850;2851;2852;2853;2859;2860;2862;2866;2867;2868;2869;2870;2871;8297;8298;8299;8300;8301;8302;8303;8304;8305 7894 8303 20190902_JH_MUT_Ubi_3 3560 7893 8301 20190902_JH_MUT_Ubi_2 3725 7893 8301 20190902_JH_MUT_Ubi_2 3725 sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN 893;887;839;786;792;833;893;786;887;839;833;792;564;570;564;570 sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN Isoform 1AC of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-5|CTND1_HUMAN Isoform 1A of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-11|CTND1_HUMAN Isoform 2AC of Catenin delta-1 OS=Homo sapiens OX=9606 1 158.141 5.27042E-33 187 152.15 158.14 1 50.8268 2.1952E-20 143.09 1 136.342 4.74149E-10 136.34 1 46.8389 0.0261294 46.839 1 56.407 1.77796E-12 116.74 1 48.2163 0.000134894 83.059 1 187.004 5.27042E-33 187 1 158.141 8.18348E-15 158.14 1 79.1771 8.33232E-05 79.445 1 76.6679 5.64811E-06 92.518 1;2 M KSDKKPDREEIQMSNMGSNTKSLDNNYSTPN X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;Deamidation (NQ) XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPP KPDREEIQM(1)SNM(1)GSNTK KPDREEIQM(158.14)SNM(158.14)GSNTK 12 3 -0.85527 62742000 10097000 52645000 0 15.921 3515900 3263700 0 5230800 9548200 3267000 4376000 2802500 4061400 3.1254 2.1154 NaN NaN NaN 2.5664 NaN NaN NaN 0 3515900 0 0 3263700 0 0 0 0 0 5230800 0 0 9548200 0 739980 2527100 0 757560 3618500 0 0 2802500 0 1636900 2424500 0 109 257 893 893 856;2414 966;967;969;970;971;972;2744;2745 2699;2700;2701;2702;2703;2704;2705;2706;2708;2714;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728;7889;7890;7891;7892;7893;7894;7895;7896 2839;2840;2841;2842;2843;2844;2845;2846;2848;2854;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;8297;8298;8299;8300;8301;8302;8303;8304;8305;8306 7894 8303 20190902_JH_MUT_Ubi_3 3560 7893 8301 20190902_JH_MUT_Ubi_2 3725 7893 8301 20190902_JH_MUT_Ubi_2 3725 sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN 926;920;872;819;825;866;905;899;851;845;597;804;603;798;582;576 sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN Isoform 1AC of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-5|CTND1_HUMAN Isoform 1A of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-11|CTND1_HUMAN Isoform 2AC of Catenin delta-1 OS=Homo sapiens OX=9606 1 63.8937 0.000113471 99.044 60.987 63.894 1 61.5197 0.00475224 61.52 1 92.6333 0.000116658 92.633 1 47.7543 0.0159833 47.754 1 85.0461 0.000277522 85.046 1 65.47 0.00309792 65.47 1 40.5195 0.0255585 40.52 1 76.5265 0.000113471 99.044 1 58.6347 0.00659337 58.635 1 63.8937 0.0034749 63.894 1;2 M GDHNRTLDRSGDLGDMEPLKGTTPLMQKI__ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPXXX SGDLGDM(1)EPLKGTTPLM(1)QK SGDLGDM(63.89)EPLKGTTPLM(63.89)QK 7 3 -1.7833 51513000 2118500 49395000 0 NaN 5775500 3217400 3242000 5595700 6852500 9289500 7882900 4619400 5038600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 5775500 0 0 3217400 0 0 3242000 0 0 5595700 0 0 6852500 0 0 9289500 0 2118500 5764400 0 0 4619400 0 0 5038600 0 110 257 926 926 3915 4445;4446 12380;12381;12382;12383;12384;12385;12386;12387;12388;12390 12984;12985;12986;12987;12988;12989;12990;12991;12992;12994 12388 12992 20190902_JH_WT_Ubi_3 8351 12390 12994 20190902_JH_MUT_Ubi_3 8097 12390 12994 20190902_JH_MUT_Ubi_3 8097 sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN 936;930;882;829;835;876;915;909;861;855;607;814;613;808;592;586 sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN Isoform 1AC of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-5|CTND1_HUMAN Isoform 1A of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-11|CTND1_HUMAN Isoform 2AC of Catenin delta-1 OS=Homo sapiens OX=9606 1 63.8937 0.000116658 92.633 62.09 63.894 1 61.5197 0.00475224 61.52 1 92.6333 0.000116658 92.633 1 47.7543 0.0159833 47.754 1 85.0461 0.000277522 85.046 1 65.47 0.00309792 65.47 1 40.5195 0.00153886 76.051 1 76.5265 0.000692621 76.526 1 58.6347 0.00659337 58.635 1 63.8937 0.0034749 63.894 1;2 M GDLGDMEPLKGTTPLMQKI____________ X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SGDLGDM(1)EPLKGTTPLM(1)QK SGDLGDM(63.89)EPLKGTTPLM(63.89)QK 17 3 -1.7833 53124000 3729500 49395000 0 NaN 5775500 3217400 3242000 5595700 6852500 10811000 7972700 4619400 5038600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 5775500 0 0 3217400 0 0 3242000 0 0 5595700 0 0 6852500 0 1521200 9289500 0 2208300 5764400 0 0 4619400 0 0 5038600 0 111 257 936 936 3915 4445;4446 12380;12381;12382;12383;12384;12385;12386;12387;12388;12389;12391 12984;12985;12986;12987;12988;12989;12990;12991;12992;12993;12995 12388 12992 20190902_JH_WT_Ubi_3 8351 12383 12987 20190821_JH_MUT_Ubi 6351 12383 12987 20190821_JH_MUT_Ubi 6351 sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN 158;158;104;57;57;104;158;57;158;104;104;57;158;158;104;104;57;57;158;158;104;104;57;57 sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN sp|O60716-3|CTND1_HUMAN Isoform 1AC of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-5|CTND1_HUMAN Isoform 1A of Catenin delta-1 OS=Homo sapiens OX=9606 GN=CTNND1;sp|O60716-11|CTND1_HUMAN Isoform 2AC of Catenin delta-1 OS=Homo sapiens OX=9606 1 45.0416 0.03111 45.042 16.896 45.042 1 45.0416 0.03111 45.042 M KVVKTVTTRTVQPVAMGPDGLPVDASSVSNN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP TVQPVAM(1)GPDGLPVDASSVSNNYIQTLGR TVQPVAM(45.04)GPDGLPVDASSVSNNYIQTLGR 7 3 4.3724 2018600 2018600 0 0 NaN 0 0 2018600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2018600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112 257 158 158 4674 5302 14972 15731 14972 15731 20190821_JH_WT_Ubi 12804 14972 15731 20190821_JH_WT_Ubi 12804 14972 15731 20190821_JH_WT_Ubi 12804 sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN 34;34;34 sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN Isoform 3 of Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1;sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1 PE=1 SV=2;sp|O60784-2|TOM1_HUMAN Isoform 2 of Target of Myb protein 1 OS=Homo sapiens O 1 76.1094 7.10684E-06 76.109 50.39 76.109 1 76.1094 7.10684E-06 76.109 1 M KATDGSLQSEDWALNMEICDIINETEEGPKD GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPX IEKATDGSLQSEDWALNM(1)EICDIINETEEGPK IEKATDGSLQSEDWALNM(76.11)EICDIINETEEGPK 18 3 1.5037 2342400 2342400 0 0 NaN 0 0 2342400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2342400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113 260 34 34 2106 2404 6993 7364 6993 7364 20190821_JH_WT_Ubi 14944 6993 7364 20190821_JH_WT_Ubi 14944 6993 7364 20190821_JH_WT_Ubi 14944 sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN 280;325;325;292 sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN Isoform 3 of Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1;sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1 PE=1 SV=2;sp|O60784-2|TOM1_HUMAN Isoform 2 of Target of Myb protein 1 OS=Homo sapiens O 1 48.2806 6.04709E-11 81.36 65.181 48.281 1 48.2806 1.96286E-08 68.206 1 53.9829 1.61206E-06 53.983 1 81.3596 6.04709E-11 81.36 1 46.9426 5.40467E-05 46.943 1 62.4894 1.70228E-07 62.489 1 77.5323 9.97818E-11 77.532 1 55.6345 1.56224E-06 55.634 2 M TKAPSEAEPAADLIDMGPDPAATGNLSSQLA X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP TGQTTKAPSEAEPAADLIDM(1)GPDPAATGNLSSQLAGM(1)NLGSSSVR TGQTTKAPSEAEPAADLIDM(48.28)GPDPAATGNLSSQLAGM(48.28)NLGSSSVR 20 3 3.5013 44326000 0 44326000 0 8.3181 5118300 7482000 8692100 0 1613500 9402800 9383900 0 0 NaN NaN 4.3364 NaN NaN NaN 2.8227 NaN NaN 0 5118300 0 0 7482000 0 0 8692100 0 0 0 0 0 1613500 0 0 9402800 0 0 9383900 0 0 0 0 0 0 0 114 260 280 280 4388 4975;4976;4977;4980 13891;13892;13893;13894;13895;13896;13897;13898 14578;14579;14580;14581;14582;14583;14584;14585;14586;14587 13898 14587 20190821_JH_EV_Ubi 11433 13896 14585 20190821_JH_WT_Ubi 11264 13896 14585 20190821_JH_WT_Ubi 11264 sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN 297;342;342;309 sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN sp|O60784-3|TOM1_HUMAN Isoform 3 of Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1;sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens OX=9606 GN=TOM1 PE=1 SV=2;sp|O60784-2|TOM1_HUMAN Isoform 2 of Target of Myb protein 1 OS=Homo sapiens O 1 48.2806 2.3694E-11 85.628 63.284 48.281 1 48.2806 1.96286E-08 68.206 1 53.9829 8.47207E-11 81.459 1 81.3596 6.04709E-11 81.36 1 46.9426 5.40467E-05 46.943 1 62.4894 1.70228E-07 62.489 1 77.5323 9.97818E-11 77.532 1 55.6345 2.3694E-11 85.628 0.999957 43.6355 7.11788E-11 82.384 1;2 M PDPAATGNLSSQLAGMNLGSSSVRAGLQSLE X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX TGQTTKAPSEAEPAADLIDM(1)GPDPAATGNLSSQLAGM(1)NLGSSSVR TGQTTKAPSEAEPAADLIDM(48.28)GPDPAATGNLSSQLAGM(48.28)NLGSSSVR 37 3 3.5013 68157000 23831000 44326000 0 12.79 5118300 11862000 16242000 0 1613500 9402800 13303000 2792500 2181900 NaN NaN 8.1027 NaN NaN NaN 4.0017 NaN NaN 0 5118300 0 4379900 7482000 0 7549500 8692100 0 0 0 0 0 1613500 0 0 9402800 0 3919500 9383900 0 2792500 0 0 2181900 0 0 115 260 297 297 4388 4975;4976;4977;4980 13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901;13902;13903;13904;13905;13909 14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588;14589;14590;14591;14592;14593;14594;14595;14599 13898 14587 20190821_JH_EV_Ubi 11433 13904 14594 20190902_JH_WT_Ubi_2 13664 13904 14594 20190902_JH_WT_Ubi_2 13664 sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN 60;60;60;60;60;60;60;60;60;60;60;60;60;60;60 sp|Q16778|H2B2E_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|P58876|H2B1D_HUMAN sp|P58876|H2B1D_HUMAN sp|Q16778|H2B2E_HUMAN Histone H2B type 2-E OS=Homo sapiens OX=9606 GN=HIST2H2BE PE=1 SV=3;sp|P62807|H2B1C_HUMAN Histone H2B type 1-C/E/F/G/I OS=Homo sapiens OX=9606 GN=HIST1H2BC PE=1 SV=4;sp|P57053|H2BFS_HUMAN Histone H2B type F-S OS=Homo sapiens OX=9606 G 1 156.811 8.0447E-12 156.81 107.35 156.81 1 156.811 8.0447E-12 156.81 2 M VLKQVHPDTGISSKAMGIMNSFVNDIFERIA X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX AM(1)GIM(1)NSFVNDIFER AM(156.81)GIM(156.81)NSFVNDIFER 2 2 -0.71697 2417800 0 2417800 0 NaN 2417800 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2417800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116 261;666;995 60;60;60 60 228 263 773 843 773 843 20190821_JH_EV_Ubi 12296 773 843 20190821_JH_EV_Ubi 12296 773 843 20190821_JH_EV_Ubi 12296 sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN 63;63;63;63;63;63;63;63;63;63;63;63;63;63;63 sp|Q16778|H2B2E_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|P58876|H2B1D_HUMAN sp|P58876|H2B1D_HUMAN sp|Q16778|H2B2E_HUMAN Histone H2B type 2-E OS=Homo sapiens OX=9606 GN=HIST2H2BE PE=1 SV=3;sp|P62807|H2B1C_HUMAN Histone H2B type 1-C/E/F/G/I OS=Homo sapiens OX=9606 GN=HIST1H2BC PE=1 SV=4;sp|P57053|H2BFS_HUMAN Histone H2B type F-S OS=Homo sapiens OX=9606 G 1 156.811 8.0447E-12 156.81 107.35 156.81 1 156.811 8.0447E-12 156.81 2 M QVHPDTGISSKAMGIMNSFVNDIFERIAGEA X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPXXXXX AM(1)GIM(1)NSFVNDIFER AM(156.81)GIM(156.81)NSFVNDIFER 5 2 -0.71697 2417800 0 2417800 0 NaN 2417800 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2417800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117 261;666;995 63;63;63 63 228 263 773 843 773 843 20190821_JH_EV_Ubi 12296 773 843 20190821_JH_EV_Ubi 12296 773 843 20190821_JH_EV_Ubi 12296 sp|O75110-2|ATP9A_HUMAN;sp|O75110|ATP9A_HUMAN 671;792 sp|O75110-2|ATP9A_HUMAN sp|O75110-2|ATP9A_HUMAN sp|O75110-2|ATP9A_HUMAN Isoform Short of Probable phospholipid-transporting ATPase IIA OS=Homo sapiens OX=9606 GN=ATP9A;sp|O75110|ATP9A_HUMAN Probable phospholipid-transporting ATPase IIA OS=Homo sapiens OX=9606 GN=ATP9A PE=1 SV=3 1 113.129 3.7169E-50 181.65 152.45 113.13 1 127.168 7.00318E-21 127.17 1 181.647 3.7169E-50 181.65 1 113.129 3.13873E-17 122.65 1 M GKLTCAVGDGGNDVSMIQESDCGVGVEGKEG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LTCAVGDGGNDVSM(1)IQESDCGVGVEGKEGK LTCAVGDGGNDVSM(113.13)IQESDCGVGVEGKEGK 14 3 1.3833 6449500 6449500 0 0 NaN 0 0 1675100 0 0 0 0 1484000 3290400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1675100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1484000 0 0 3290400 0 0 118 269 671 671 2821 3197 9070;9071;9072;9073 9542;9543;9544;9545;9546 9073 9546 20190902_JH_WT_Ubi_3 8758 9071 9544 20190902_JH_WT_Ubi_2 9177 9071 9544 20190902_JH_WT_Ubi_2 9177 sp|O75131|CPNE3_HUMAN 233 sp|O75131|CPNE3_HUMAN sp|O75131|CPNE3_HUMAN sp|O75131|CPNE3_HUMAN Copine-3 OS=Homo sapiens OX=9606 GN=CPNE3 PE=1 SV=1 1 41.703 0.0249621 41.703 26.388 41.703 1 41.703 0.0249621 41.703 1 M DNDGSHDLIGTFQTTMTKLKEASRSSPVEFE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX VECYDYDNDGSHDLIGTFQTTM(1)TK VECYDYDNDGSHDLIGTFQTTM(41.7)TK 22 3 -0.72585 1323900 1323900 0 0 NaN 0 0 0 0 0 0 0 1323900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1323900 0 0 0 0 0 119 270 233 233 4771 5414 15294 16066 15294 16066 20190902_JH_WT_Ubi_2 11374 15294 16066 20190902_JH_WT_Ubi_2 11374 15294 16066 20190902_JH_WT_Ubi_2 11374 sp|O75185|AT2C2_HUMAN;sp|O75185-3|AT2C2_HUMAN;sp|O75185-2|AT2C2_HUMAN 624;624;641 sp|O75185|AT2C2_HUMAN sp|O75185|AT2C2_HUMAN sp|O75185|AT2C2_HUMAN Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens OX=9606 GN=ATP2C2 PE=1 SV=2;sp|O75185-3|AT2C2_HUMAN Isoform 3 of Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens OX=9606 GN=ATP2C2;sp|O75185-2|AT2C2_HUMAN Isofo 1 56.9005 5.95192E-07 120.56 79.304 56.9 1 120.56 5.95192E-07 120.56 1 56.9005 0.0144135 56.9 1 M AIGRNIGLCNGKLQAMSGEEVDSVEKGELAD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP LQAM(1)SGEEVDSVEKGELADR LQAM(56.9)SGEEVDSVEKGELADR 4 3 0.65888 2863200 2863200 0 0 NaN 2252800 610440 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2252800 0 0 610440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120 274 624 624 2769 3144 8951;8952 9416;9417;9418 8952 9418 20190821_JH_MUT_Ubi 5846 8951 9417 20190821_JH_EV_Ubi 6392 8951 9417 20190821_JH_EV_Ubi 6392 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN 2520;2533;2544;2575;2364;2479;2503 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 121.002 7.34576E-12 129.51 91.448 121 1 53.6247 0.00584278 57.227 1 129.506 7.34576E-12 129.51 1 107.087 1.86902E-07 107.09 1 83.3953 9.75743E-05 83.395 1 121.472 1.44977E-09 121.47 1 110.327 4.74584E-08 110.33 1 121.002 1.84763E-09 121 1;2 M QKSSFLVDCSKAGSNMLLIGVHGPTTPCEEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP AGSNM(1)LLIGVHGPTTPCEEVSM(1)K AGSNM(121)LLIGVHGPTTPCEEVSM(121)K 5 3 -1.6776 61552000 6163600 55388000 0 20.576 0 4788100 13462000 5565700 5769000 6498100 0 11143000 14326000 NaN 2.3744 NaN NaN NaN NaN 0 NaN NaN 0 0 0 1697800 3090200 0 4465800 8996200 0 0 5565700 0 0 5769000 0 0 6498100 0 0 0 0 0 11143000 0 0 14326000 0 121 282 2520 2520 137 155;156 469;470;471;472;473;474;475;476;477 519;520;521;522;523;524;525;526;527 475 525 20190902_JH_WT_Ubi_3 9530 473 523 20190821_JH_WT_Ubi 7827 473 523 20190821_JH_WT_Ubi 7827 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN 2537;2550;2561;2592;2381;2496;2520 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 121.002 7.34576E-12 129.51 91.448 121 1 53.6247 0.00741995 53.625 1 129.506 7.34576E-12 129.51 1 107.087 1.86902E-07 107.09 1 83.3953 9.75743E-05 83.395 1 121.472 1.44977E-09 121.47 1 110.327 4.74584E-08 110.33 1 121.002 1.84763E-09 121 2 M LIGVHGPTTPCEEVSMKHVGNQQYNVTYVVK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX AGSNM(1)LLIGVHGPTTPCEEVSM(1)K AGSNM(121)LLIGVHGPTTPCEEVSM(121)K 22 3 -1.6776 55388000 0 55388000 0 18.516 0 3090200 8996200 5565700 5769000 6498100 0 11143000 14326000 NaN 1.5325 NaN NaN NaN NaN 0 NaN NaN 0 0 0 0 3090200 0 0 8996200 0 0 5565700 0 0 5769000 0 0 6498100 0 0 0 0 0 11143000 0 0 14326000 0 122 282 2537 2537 137 155;156 469;470;471;472;473;474;475 519;520;521;522;523;524;525 475 525 20190902_JH_WT_Ubi_3 9530 473 523 20190821_JH_WT_Ubi 7827 473 523 20190821_JH_WT_Ubi 7827 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN 2105;2118;2129;2160;1949 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 56.9055 0.0115876 56.906 32.45 56.906 1 56.9055 0.0115876 56.906 1 M ICDLNLKIPEINSSDMSAHVTSPSGRVTEAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX IPEINSSDM(1)SAHVTSPSGR IPEINSSDM(56.91)SAHVTSPSGR 9 3 0.085054 4750200 4750200 0 0 NaN 0 0 0 0 0 0 0 0 4750200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4750200 0 0 123 282 2105 2105 2222 2531 7309 7688 7309 7688 20190902_JH_WT_Ubi_3 7227 7309 7688 20190902_JH_WT_Ubi_3 7227 7309 7688 20190902_JH_WT_Ubi_3 7227 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN 1742;1755;1766;1797;1586;1742;1766;1766;1766 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 59.294 0.00343588 86.944 50.652 59.294 1 86.9442 0.00343588 86.944 1 84.2973 0.00357316 84.297 1 59.294 0.0222368 59.294 1 M IPFAVRKGEITGEVHMPSGKTATPEIVDNKD X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPXXXXXXXXXXX KGEITGEVHM(1)PSGK KGEITGEVHM(59.29)PSGK 10 3 -1.2493 9655300 9655300 0 0 2.2888 0 0 0 0 0 3799600 5855700 0 0 NaN 0 NaN NaN NaN NaN NaN 0 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3799600 0 0 5855700 0 0 0 0 0 0 0 0 124 282 1742 1742 2350 2673 7740;7741;7742 8141;8142;8143 7742 8143 20190902_JH_MUT_Ubi_3 3890 7740 8141 20190902_JH_EV_Ubi_2 3870 7740 8141 20190902_JH_EV_Ubi_2 3870 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN 421;421;421;421;252;421;421;421;421 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 104.014 0.00324849 104.01 51.532 104.01 1 104.014 0.00324849 104.01 1 M VEDKGNQVYRCVYKPMQPGPHVVKIFFAGDT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPXXXXXXX PM(1)QPGPHVVK PM(104.01)QPGPHVVK 2 3 0.58955 8997200 8997200 0 0 NaN 0 0 0 0 0 0 0 0 8997200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8997200 0 0 125 282 421 421 3468 3955 11132 11697 11132 11697 20190902_JH_WT_Ubi_3 4419 11132 11697 20190902_JH_WT_Ubi_3 4419 11132 11697 20190902_JH_WT_Ubi_3 4419 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN 2421;2434;2445;2476;2265;2380;2404 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 0.999863 38.623 0.0117312 69.451 30.303 69.451 0.999863 38.623 0.0117312 69.451 1 M DCQETPEGYKVMYTPMAPGNYLISVKYGGPN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX VMYTPM(1)APGNYLISVK VM(-38.62)YTPM(38.62)APGNYLISVK 6 2 0.23123 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 126 282 2421 2421 4946 5616 15899 16707 15899 16707 20190902_JH_MUT_Ubi_3 11132 15899 16707 20190902_JH_MUT_Ubi_3 11132 15899 16707 20190902_JH_MUT_Ubi_3 11132 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN 1779;1792;1803;1834;1623;1779;1803;1803;1803 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 68.6187 9.0508E-08 78.909 55.161 68.619 1 55.4069 0.000124471 55.407 1 43.4622 0.00283329 43.462 1 78.9094 9.0508E-08 78.909 1 46.0344 0.0019642 46.034 1 68.6187 1.27949E-05 68.619 1 M YAPTEVGLHEMHIKYMGSHIPESPLQFYVNY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP YM(1)GSHIPESPLQFYVNYPNSGSVSAYGPGLVYGVANK YM(68.62)GSHIPESPLQFYVNYPNSGSVSAYGPGLVYGVANK 2 3 -0.4872 23558000 23558000 0 0 13.224 4418900 4152000 7287900 0 0 0 1294000 6405700 0 NaN NaN 4.0907 NaN NaN NaN NaN NaN NaN 4418900 0 0 4152000 0 0 7287900 0 0 0 0 0 0 0 0 0 0 0 1294000 0 0 6405700 0 0 0 0 0 127 282 1779 1779 5174 5885 16680;16681;16682;16683;16684 17532;17533;17534;17535;17536 16684 17536 20190902_JH_WT_Ubi_2 14879 16683 17535 20190821_JH_WT_Ubi 13809 16683 17535 20190821_JH_WT_Ubi 13809 sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN 918;918;918;918;749;918;918;918;918 sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN sp|O75369-2|FLNB_HUMAN Isoform 2 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369-9|FLNB_HUMAN Isoform 9 of Filamin-B OS=Homo sapiens OX=9606 GN=FLNB;sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens OX=9606 GN=FLNB PE=1 SV=2;sp|O75369-8|FLNB_HUMAN Isof 1 122.297 1.51105E-09 122.3 88.944 122.3 1 79.0294 0.000273953 79.029 1 120.415 4.70904E-09 120.41 1 122.297 1.51105E-09 122.3 1 M DYSHTVKYTPTQQGNMQVLVTYGGDPIPKSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPXX YTPTQQGNM(1)QVLVTYGGDPIPK YTPTQQGNM(122.3)QVLVTYGGDPIPK 9 3 3.0679 9395600 9395600 0 0 1.7172 4210000 3403700 0 0 0 0 1781900 0 0 2.8092 1.5003 NaN NaN NaN 0 NaN NaN NaN 4210000 0 0 3403700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1781900 0 0 0 0 0 0 0 0 128 282 918 918 5210 5930 16812;16813;16814 17672;17673;17674;17675;17676 16814 17675 20190902_JH_MUT_Ubi_3 9871 16814 17675 20190902_JH_MUT_Ubi_3 9871 16814 17675 20190902_JH_MUT_Ubi_3 9871 sp|O75387|LAT3_HUMAN;sp|O75387-2|LAT3_HUMAN 276;276 sp|O75387|LAT3_HUMAN sp|O75387|LAT3_HUMAN sp|O75387|LAT3_HUMAN Large neutral amino acids transporter small subunit 3 OS=Homo sapiens OX=9606 GN=SLC43A1 PE=1 SV=1;sp|O75387-2|LAT3_HUMAN Isoform 2 of Large neutral amino acids transporter small subunit 3 OS=Homo sapiens OX=9606 GN=SLC43A1 1 130.175 6.10574E-30 169.84 116.38 130.17 1 96.3414 5.14864E-06 96.341 1 148.334 9.84912E-22 148.33 1 93.5507 8.67933E-06 93.551 1 138.816 1.1178E-15 138.82 1 169.838 6.10574E-30 169.84 1 130.175 1.8577E-11 130.17 1 M LSQKAPSLEDGSDAFMSPQDVRGTSENLPER X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX LSQKAPSLEDGSDAFM(1)SPQDVR LSQKAPSLEDGSDAFM(130.17)SPQDVR 16 3 0.062228 26096000 26096000 0 0 NaN 2505900 0 4215500 2224800 0 2456400 0 7763200 6929900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2505900 0 0 0 0 0 4215500 0 0 2224800 0 0 0 0 0 2456400 0 0 0 0 0 7763200 0 0 6929900 0 0 129 286 276 276 2812 3188 9053;9054;9055;9056;9057;9058 9525;9526;9527;9528;9529;9530 9058 9530 20190902_JH_WT_Ubi_3 9142 9057 9529 20190902_JH_WT_Ubi_2 9594 9057 9529 20190902_JH_WT_Ubi_2 9594 sp|O75390|CISY_HUMAN 154 sp|O75390|CISY_HUMAN sp|O75390|CISY_HUMAN sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial OS=Homo sapiens OX=9606 GN=CS PE=1 SV=2 1 44.3657 1.50012E-05 68.271 46.995 44.366 1 68.2707 1.50012E-05 68.271 1 57.0251 0.000117161 57.025 1 43.4829 0.00364081 43.483 1 67.1812 1.73195E-05 67.181 1 44.3657 0.00325347 44.366 2 M KEWAKRAALPSHVVTMLDNFPTNLHPMSQLS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP AALPSHVVTM(1)LDNFPTNLHPM(1)SQLSAAVTALNSESNFAR AALPSHVVTM(44.37)LDNFPTNLHPM(44.37)SQLSAAVTALNSESNFAR 10 4 -0.34214 41134000 0 41134000 0 2.197 0 6769400 17338000 0 0 4931800 2795100 9299700 0 NaN 0.95214 1.493 NaN NaN NaN NaN NaN NaN 0 0 0 0 6769400 0 0 17338000 0 0 0 0 0 0 0 0 4931800 0 0 2795100 0 0 9299700 0 0 0 0 130 287 154 154 27 29;30 90;91;92;93;94 98;99;100;101;102;103;104 94 104 20190902_JH_WT_Ubi_2 14175 90 98 20190821_JH_MUT_Ubi 12286 90 98 20190821_JH_MUT_Ubi 12286 sp|O75390|CISY_HUMAN 165 sp|O75390|CISY_HUMAN sp|O75390|CISY_HUMAN sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial OS=Homo sapiens OX=9606 GN=CS PE=1 SV=2 1 44.3657 1.50012E-05 68.271 46.995 44.366 1 68.2707 1.50012E-05 68.271 1 57.0251 0.000117161 57.025 1 43.4829 0.00364081 43.483 1 67.1812 1.73195E-05 67.181 1 44.3657 0.00325347 44.366 1;2 M HVVTMLDNFPTNLHPMSQLSAAVTALNSESN X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP AALPSHVVTM(1)LDNFPTNLHPM(1)SQLSAAVTALNSESNFAR AALPSHVVTM(44.37)LDNFPTNLHPM(44.37)SQLSAAVTALNSESNFAR 21 4 -0.34214 49245000 8110600 41134000 0 2.6302 0 14140000 17338000 0 0 4931800 3534700 9299700 0 NaN 1.9889 1.493 NaN NaN NaN NaN NaN NaN 0 0 0 7371000 6769400 0 0 17338000 0 0 0 0 0 0 0 0 4931800 0 739610 2795100 0 0 9299700 0 0 0 0 131 287 165 165 27 29;30 90;91;92;93;94;95;96 98;99;100;101;102;103;104;105;106 94 104 20190902_JH_WT_Ubi_2 14175 90 98 20190821_JH_MUT_Ubi 12286 90 98 20190821_JH_MUT_Ubi 12286 sp|O75477|ERLN1_HUMAN 52 sp|O75477|ERLN1_HUMAN sp|O75477|ERLN1_HUMAN sp|O75477|ERLN1_HUMAN Erlin-1 OS=Homo sapiens OX=9606 GN=ERLIN1 PE=1 SV=1 1 41.136 0.0107974 49.528 25.87 41.136 1 49.0886 0.0115922 49.089 1 49.5276 0.0107974 49.528 1 41.136 0.0259886 41.136 1 M GGALLTSPSGPGYHIMLPFITTFRSVQTTLQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX GGALLTSPSGPGYHIM(1)LPFITTFR GGALLTSPSGPGYHIM(41.14)LPFITTFR 16 3 0.10185 18181000 18181000 0 0 3.8824 0 0 9778400 0 0 700340 0 0 7702500 NaN NaN 2.0881 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9778400 0 0 0 0 0 0 0 0 700340 0 0 0 0 0 0 0 0 7702500 0 0 132 290 52 52 1477 1682 4706;4707;4708 4946;4947;4948 4708 4948 20190902_JH_WT_Ubi_3 14713 4706 4946 20190902_JH_MUT_Ubi_2 14364 4706 4946 20190902_JH_MUT_Ubi_2 14364 sp|O75489|NDUS3_HUMAN 173 sp|O75489|NDUS3_HUMAN sp|O75489|NDUS3_HUMAN sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFS3 PE=1 SV=1 1 63.2903 0.00883297 63.29 18.834 63.29 1 63.2903 0.00883297 63.29 1 M SVFKAANWYEREIWDMFGVFFANHPDLRRIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPXXX EIWDM(1)FGVFFANHPDLR EIWDM(63.29)FGVFFANHPDLR 5 3 0.98875 2216800 2216800 0 0 NaN 0 0 0 0 0 0 0 2216800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2216800 0 0 0 0 0 133 291 173 173 954 1077 3014 3168 3014 3168 20190902_JH_WT_Ubi_2 15934 3014 3168 20190902_JH_WT_Ubi_2 15934 3014 3168 20190902_JH_WT_Ubi_2 15934 sp|O75506|HSBP1_HUMAN 23 sp|O75506|HSBP1_HUMAN sp|O75506|HSBP1_HUMAN sp|O75506|HSBP1_HUMAN Heat shock factor-binding protein 1 OS=Homo sapiens OX=9606 GN=HSBP1 PE=1 SV=1 1 82.7086 2.75558E-39 188.9 142.01 82.709 1 188.903 2.75558E-39 188.9 1 82.7086 0.000589268 82.709 1 44.7352 0.0300784 44.735 1 134.332 5.6061E-10 134.33 1 M TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX TVQDLTSVVQTLLQQM(1)QDK TVQDLTSVVQTLLQQM(82.71)QDK 16 3 -1.0581 5226500 5226500 0 0 NaN 1833200 0 1392300 664130 1336900 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1833200 0 0 0 0 0 1392300 0 0 664130 0 0 1336900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134 292 23 23 4672 5300 14967;14968;14969;14970 15726;15727;15728;15729 14970 15729 20190821_JH_WT_Ubi 15622 14967 15726 20190821_JH_EV_Ubi 14538 14967 15726 20190821_JH_EV_Ubi 14538 sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN 190;206 sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN Isoform 2 of Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1;sp|O75608|LYPA1_HUMAN Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1 PE=1 SV=1 1 98.5734 0.00362343 98.573 93.12 98.573 1 98.5734 0.00362343 98.573 4 M TLVNPANVTFKTYEGMMHSSCQQEMMDVKQF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX TYEGM(1)M(1)HSSCQQEM(1)M(1)DVK TYEGM(98.57)M(98.57)HSSCQQEM(98.57)M(98.57)DVK 5 3 -0.32311 1455900 0 0 1455900 NaN 0 0 0 0 0 0 0 0 1455900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455900 135 296 190 190 4694 5325 15056 15820 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN 191;207 sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN Isoform 2 of Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1;sp|O75608|LYPA1_HUMAN Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1 PE=1 SV=1 1 98.5734 0.00362343 98.573 93.12 98.573 1 98.5734 0.00362343 98.573 4 M LVNPANVTFKTYEGMMHSSCQQEMMDVKQFI X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPXXX TYEGM(1)M(1)HSSCQQEM(1)M(1)DVK TYEGM(98.57)M(98.57)HSSCQQEM(98.57)M(98.57)DVK 6 3 -0.32311 1455900 0 0 1455900 NaN 0 0 0 0 0 0 0 0 1455900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455900 136 296 191 191 4694 5325 15056 15820 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN 199;215 sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN Isoform 2 of Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1;sp|O75608|LYPA1_HUMAN Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1 PE=1 SV=1 1 98.5734 0.00362343 98.573 93.12 98.573 1 98.5734 0.00362343 98.573 4 M FKTYEGMMHSSCQQEMMDVKQFIDKLLPPID X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPXXXXXXXXXXX TYEGM(1)M(1)HSSCQQEM(1)M(1)DVK TYEGM(98.57)M(98.57)HSSCQQEM(98.57)M(98.57)DVK 14 3 -0.32311 1455900 0 0 1455900 NaN 0 0 0 0 0 0 0 0 1455900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455900 137 296 199 199 4694 5325 15056 15820 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN 200;216 sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN sp|O75608-2|LYPA1_HUMAN Isoform 2 of Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1;sp|O75608|LYPA1_HUMAN Acyl-protein thioesterase 1 OS=Homo sapiens OX=9606 GN=LYPLA1 PE=1 SV=1 1 98.5734 0.00362343 98.573 93.12 98.573 1 98.5734 0.00362343 98.573 4 M KTYEGMMHSSCQQEMMDVKQFIDKLLPPID_ X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX TYEGM(1)M(1)HSSCQQEM(1)M(1)DVK TYEGM(98.57)M(98.57)HSSCQQEM(98.57)M(98.57)DVK 15 3 -0.32311 1455900 0 0 1455900 NaN 0 0 0 0 0 0 0 0 1455900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455900 138 296 200 200 4694 5325 15056 15820 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 15056 15820 20190902_JH_WT_Ubi_3 4616 sp|O75874|IDHC_HUMAN 180 sp|O75874|IDHC_HUMAN sp|O75874|IDHC_HUMAN sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens OX=9606 GN=IDH1 PE=1 SV=2 1 112.556 1.31438E-29 163.49 132.81 112.56 1 89.8161 5.40947E-06 89.816 1 163.489 1.31438E-29 163.49 1 112.556 8.98897E-09 112.56 2 M VTYLVHNFEEGGGVAMGMYNQDKSIEDFAHS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX VTYLVHNFEEGGGVAM(1)GM(1)YNQDK VTYLVHNFEEGGGVAM(112.56)GM(112.56)YNQDK 16 3 -0.71642 15795000 0 15795000 0 NaN 0 0 3210400 0 0 0 0 5416300 7168300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3210400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5416300 0 0 7168300 0 139 304 180 180 5046 5731 16277;16278;16279 17108;17109;17110 16279 17110 20190902_JH_WT_Ubi_3 9545 16278 17109 20190902_JH_WT_Ubi_2 10023 16278 17109 20190902_JH_WT_Ubi_2 10023 sp|O75874|IDHC_HUMAN 182 sp|O75874|IDHC_HUMAN sp|O75874|IDHC_HUMAN sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens OX=9606 GN=IDH1 PE=1 SV=2 1 112.556 1.31438E-29 163.49 132.81 112.56 1 89.8161 5.40947E-06 89.816 1 163.489 1.31438E-29 163.49 1 112.556 8.98897E-09 112.56 2 M YLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX VTYLVHNFEEGGGVAM(1)GM(1)YNQDK VTYLVHNFEEGGGVAM(112.56)GM(112.56)YNQDK 18 3 -0.71642 15795000 0 15795000 0 NaN 0 0 3210400 0 0 0 0 5416300 7168300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3210400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5416300 0 0 7168300 0 140 304 182 182 5046 5731 16277;16278;16279 17108;17109;17110 16279 17110 20190902_JH_WT_Ubi_3 9545 16278 17109 20190902_JH_WT_Ubi_2 10023 16278 17109 20190902_JH_WT_Ubi_2 10023 sp|O75886-2|STAM2_HUMAN;sp|O75886|STAM2_HUMAN 136;136 sp|O75886-2|STAM2_HUMAN sp|O75886-2|STAM2_HUMAN sp|O75886-2|STAM2_HUMAN Isoform 2 of Signal transducing adapter molecule 2 OS=Homo sapiens OX=9606 GN=STAM2;sp|O75886|STAM2_HUMAN Signal transducing adapter molecule 2 OS=Homo sapiens OX=9606 GN=STAM2 PE=1 SV=1 1 123.677 1.67223E-05 124.81 92.109 123.68 1 124.811 1.67223E-05 124.81 1 71.3439 0.000884449 94.547 1 123.677 1.85332E-05 123.68 1 M QKDPQFSLISATIKSMKEEGITFPPAGSQTV X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPXXXXXXXXXXXXXX DPQFSLISATIKSM(1)K DPQFSLISATIKSM(123.68)K 14 3 1.1094 13419000 13419000 0 0 NaN 0 2836800 0 0 0 5444500 4465300 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2836800 0 0 0 0 0 0 0 0 0 0 0 5444500 0 0 4465300 0 0 0 0 0 0 0 0 141 305 136 136 652 747 2046;2047;2048;2049 2170;2171;2172;2173 2049 2173 20190902_JH_MUT_Ubi_3 10100 2046 2170 20190821_JH_MUT_Ubi 9496 2046 2170 20190821_JH_MUT_Ubi 9496 sp|O75911|DHRS3_HUMAN 133 sp|O75911|DHRS3_HUMAN sp|O75911|DHRS3_HUMAN sp|O75911|DHRS3_HUMAN Short-chain dehydrogenase/reductase 3 OS=Homo sapiens OX=9606 GN=DHRS3 PE=1 SV=2 1 61.0396 0.00139366 61.04 38.152 61.04 1 61.0396 0.00139366 61.04 1 M TILVNNAAVVHGKSLMDSDDDALLKSQHINT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP SLM(1)DSDDDALLKSQHINTLGQFWTTK SLM(61.04)DSDDDALLKSQHINTLGQFWTTK 3 4 0.51079 12777000 12777000 0 0 NaN 0 0 12777000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 12777000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142 306 133 133 4035 4583 12788 13412 12788 13412 20190821_JH_WT_Ubi 11022 12788 13412 20190821_JH_WT_Ubi 11022 12788 13412 20190821_JH_WT_Ubi 11022 sp|O76003|GLRX3_HUMAN 49 sp|O76003|GLRX3_HUMAN sp|O76003|GLRX3_HUMAN sp|O76003|GLRX3_HUMAN Glutaredoxin-3 OS=Homo sapiens OX=9606 GN=GLRX3 PE=1 SV=2 1 53.2811 0.0126667 53.281 22.399 53.281 1 53.2811 0.0126667 53.281 2 M LVVHFWAPWAPQCAQMNEVMAELAKELPQVS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX SLLVVHFWAPWAPQCAQM(1)NEVM(1)AELAK SLLVVHFWAPWAPQCAQM(53.28)NEVM(53.28)AELAK 18 3 0.24177 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 143 309 49 49 4034 4582 12787 13411 12787 13411 20190821_JH_WT_Ubi 14223 12787 13411 20190821_JH_WT_Ubi 14223 12787 13411 20190821_JH_WT_Ubi 14223 sp|O76003|GLRX3_HUMAN 53 sp|O76003|GLRX3_HUMAN sp|O76003|GLRX3_HUMAN sp|O76003|GLRX3_HUMAN Glutaredoxin-3 OS=Homo sapiens OX=9606 GN=GLRX3 PE=1 SV=2 1 53.2811 0.0126667 53.281 22.399 53.281 1 53.2811 0.0126667 53.281 2 M FWAPWAPQCAQMNEVMAELAKELPQVSFVKL X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX SLLVVHFWAPWAPQCAQM(1)NEVM(1)AELAK SLLVVHFWAPWAPQCAQM(53.28)NEVM(53.28)AELAK 22 3 0.24177 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144 309 53 53 4034 4582 12787 13411 12787 13411 20190821_JH_WT_Ubi 14223 12787 13411 20190821_JH_WT_Ubi 14223 12787 13411 20190821_JH_WT_Ubi 14223 sp|O76021|RL1D1_HUMAN 221 sp|O76021|RL1D1_HUMAN sp|O76021|RL1D1_HUMAN sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3 1 75.7435 0.00751327 75.743 48.03 75.743 1 75.7435 0.00751327 75.743 1 M SKSGSCSAIRIGHVGMQIEHIIENIVAVTKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPX IGHVGM(1)QIEHIIENIVAVTK IGHVGM(75.74)QIEHIIENIVAVTK 6 3 -3.2167 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145 310 221 221 2129 2429 7069 7442 7069 7442 20190821_JH_WT_Ubi 14194 7069 7442 20190821_JH_WT_Ubi 14194 7069 7442 20190821_JH_WT_Ubi 14194 sp|O76054-5|S14L2_HUMAN;sp|O76054|S14L2_HUMAN;sp|O76054-4|S14L2_HUMAN 162;245;245 sp|O76054-5|S14L2_HUMAN sp|O76054-5|S14L2_HUMAN sp|O76054-5|S14L2_HUMAN Isoform 3 of SEC14-like protein 2 OS=Homo sapiens OX=9606 GN=SEC14L2;sp|O76054|S14L2_HUMAN SEC14-like protein 2 OS=Homo sapiens OX=9606 GN=SEC14L2 PE=1 SV=1;sp|O76054-4|S14L2_HUMAN Isoform 2 of SEC14-like protein 2 OS=Homo sapiens O 1 85.9686 0.00385687 85.969 42.12 85.969 1 85.9686 0.00385687 85.969 M KHISPDQVPVEYGGTMTDPDGNPKCKSKINY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX HISPDQVPVEYGGTM(1)TDPDGNPK HISPDQVPVEYGGTM(85.97)TDPDGNPK 15 3 2.8288 2936700 2936700 0 0 NaN 0 0 0 0 0 0 0 2936700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2936700 0 0 0 0 0 146 311 162 162 1881 2137 6068 6389 6068 6389 20190902_JH_WT_Ubi_2 8998 6068 6389 20190902_JH_WT_Ubi_2 8998 6068 6389 20190902_JH_WT_Ubi_2 8998 sp|O94905-2|ERLN2_HUMAN;sp|O94905-3|ERLN2_HUMAN;sp|O94905|ERLN2_HUMAN 52;52;52 sp|O94905-2|ERLN2_HUMAN sp|O94905-2|ERLN2_HUMAN sp|O94905-2|ERLN2_HUMAN Isoform 2 of Erlin-2 OS=Homo sapiens OX=9606 GN=ERLIN2;sp|O94905-3|ERLN2_HUMAN Isoform 3 of Erlin-2 OS=Homo sapiens OX=9606 GN=ERLIN2;sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens OX=9606 GN=ERLIN2 PE=1 SV=1 1 69.122 0.00097582 69.122 41.851 69.122 1 69.122 0.00097582 69.122 1 M GGALLTSTSGPGFHLMLPFITSYKSVQTTLQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX GGALLTSTSGPGFHLM(1)LPFITSYK GGALLTSTSGPGFHLM(69.12)LPFITSYK 16 3 -0.47341 24144000 24144000 0 0 0.79724 0 0 0 0 0 0 0 0 24144000 NaN NaN 0 NaN NaN NaN NaN 0 6.8869 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24144000 0 0 147 321 52 52 1478 1685 4713 4953 4713 4953 20190902_JH_WT_Ubi_3 14664 4713 4953 20190902_JH_WT_Ubi_3 14664 4713 4953 20190902_JH_WT_Ubi_3 14664 sp|O94910-2|AGRL1_HUMAN;sp|O94910|AGRL1_HUMAN 1161;1166 sp|O94910-2|AGRL1_HUMAN sp|O94910-2|AGRL1_HUMAN sp|O94910-2|AGRL1_HUMAN Isoform 2 of Adhesion G protein-coupled receptor L1 OS=Homo sapiens OX=9606 GN=ADGRL1;sp|O94910|AGRL1_HUMAN Adhesion G protein-coupled receptor L1 OS=Homo sapiens OX=9606 GN=ADGRL1 PE=1 SV=1 1 52.4319 0.022559 52.432 26.194 52.432 1 52.4319 0.022559 52.432 1 M RMWNDTVRKQTESSFMAGDINSTPTLNRGTM X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX KQTESSFM(1)AGDINSTPTLNR KQTESSFM(52.43)AGDINSTPTLNR 8 3 -3.1799 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148 322 1161 1161 2451 2786 8007 8418 8007 8418 20190902_JH_MUT_Ubi_3 6961 8007 8418 20190902_JH_MUT_Ubi_3 6961 8007 8418 20190902_JH_MUT_Ubi_3 6961 sp|O94915|FRYL_HUMAN 224 sp|O94915|FRYL_HUMAN sp|O94915|FRYL_HUMAN sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens OX=9606 GN=FRYL PE=1 SV=2 1 54.2806 0.0147722 54.281 14.596 54.281 1 54.2806 0.0147722 54.281 2 M KEQSPHVVQSVISLIMGMKFFRVKMYPVEDF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX EQSPHVVQSVISLIM(1)GM(1)K EQSPHVVQSVISLIM(54.28)GM(54.28)K 15 3 -0.025953 1426200 0 1426200 0 NaN 1426200 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 1426200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149 323 224 224 1082 1220 3448 3625 3448 3625 20190821_JH_EV_Ubi 12278 3448 3625 20190821_JH_EV_Ubi 12278 3448 3625 20190821_JH_EV_Ubi 12278 sp|O94915|FRYL_HUMAN 226 sp|O94915|FRYL_HUMAN sp|O94915|FRYL_HUMAN sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens OX=9606 GN=FRYL PE=1 SV=2 1 54.2806 0.0147722 54.281 14.596 54.281 1 54.2806 0.0147722 54.281 2 M QSPHVVQSVISLIMGMKFFRVKMYPVEDFEA X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX EQSPHVVQSVISLIM(1)GM(1)K EQSPHVVQSVISLIM(54.28)GM(54.28)K 17 3 -0.025953 1426200 0 1426200 0 NaN 1426200 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 1426200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 150 323 226 226 1082 1220 3448 3625 3448 3625 20190821_JH_EV_Ubi 12278 3448 3625 20190821_JH_EV_Ubi 12278 3448 3625 20190821_JH_EV_Ubi 12278 sp|O94925|GLSK_HUMAN;sp|O94925-3|GLSK_HUMAN 333;333 sp|O94925|GLSK_HUMAN sp|O94925|GLSK_HUMAN sp|O94925|GLSK_HUMAN Glutaminase kidney isoform, mitochondrial OS=Homo sapiens OX=9606 GN=GLS PE=1 SV=1;sp|O94925-3|GLSK_HUMAN Isoform 3 of Glutaminase kidney isoform, mitochondrial OS=Homo sapiens OX=9606 GN=GLS 1 63.6908 0.000703219 84.41 55.082 63.691 1 84.4097 0.000703219 84.41 1 44.3907 0.0326562 44.391 1 63.6908 0.00662453 63.691 1 M FNKLFLNEDDKPHNPMVNAGAIVVTSLIKQG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX PHNPM(1)VNAGAIVVTSLIK PHNPM(63.69)VNAGAIVVTSLIK 5 3 -0.52105 6372300 6372300 0 0 3.5957 0 0 3131600 0 0 0 0 2013700 1227100 NaN NaN 1.7671 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3131600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2013700 0 0 1227100 0 0 151 324 333 333 3378 3857 10817;10818;10819 11380;11381;11382 10819 11382 20190902_JH_WT_Ubi_3 11310 10817 11380 20190821_JH_WT_Ubi 9835 10817 11380 20190821_JH_WT_Ubi 9835 sp|O94973-3|AP2A2_HUMAN;sp|O94973|AP2A2_HUMAN;sp|O94973-2|AP2A2_HUMAN 128;128;128 sp|O94973-3|AP2A2_HUMAN sp|O94973-3|AP2A2_HUMAN sp|O94973-3|AP2A2_HUMAN Isoform 3 of AP-2 complex subunit alpha-2 OS=Homo sapiens OX=9606 GN=AP2A2;sp|O94973|AP2A2_HUMAN AP-2 complex subunit alpha-2 OS=Homo sapiens OX=9606 GN=AP2A2 PE=1 SV=2;sp|O94973-2|AP2A2_HUMAN Isoform 2 of AP-2 complex subunit alpha 1 58.2461 0.011947 58.246 27.341 58.246 1 58.2461 0.011947 58.246 1 M NNAIKNDLASRNPTFMGLALHCIASVGSREM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX NPTFM(1)GLALHCIASVGSR NPTFM(58.25)GLALHCIASVGSR 5 3 0.39798 3887100 3887100 0 0 NaN 0 0 3887100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3887100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 152 325 128 128 3193 3649 10283 10823 10283 10823 20190821_JH_WT_Ubi 9737 10283 10823 20190821_JH_WT_Ubi 9737 10283 10823 20190821_JH_WT_Ubi 9737 sp|O94979-7|SC31A_HUMAN;sp|O94979-6|SC31A_HUMAN;sp|O94979-3|SC31A_HUMAN;sp|O94979-10|SC31A_HUMAN;sp|O94979-4|SC31A_HUMAN;sp|O94979-9|SC31A_HUMAN;sp|O94979-2|SC31A_HUMAN;sp|O94979|SC31A_HUMAN;sp|O94979-8|SC31A_HUMAN 470;698;737;698;698;732;737;737;737 sp|O94979-7|SC31A_HUMAN sp|O94979-7|SC31A_HUMAN sp|O94979-7|SC31A_HUMAN Isoform 7 of Protein transport protein Sec31A OS=Homo sapiens OX=9606 GN=SEC31A;sp|O94979-6|SC31A_HUMAN Isoform 6 of Protein transport protein Sec31A OS=Homo sapiens OX=9606 GN=SEC31A;sp|O94979-3|SC31A_HUMAN Isoform 3 of Protein tra 1 72.5683 0.00106043 72.568 41.595 72.568 1 72.5683 0.00106043 72.568 1 M EKVVILRKAVQLTQAMDTSTVGVLLAAKMSQ X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPXXX KAVQLTQAM(1)DTSTVGVLLAAK KAVQLTQAM(72.57)DTSTVGVLLAAK 9 3 -1.3997 2577600 2577600 0 0 NaN 0 2577600 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2577600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153 326 470 470 2320 2639 7628 8025 7628 8025 20190821_JH_MUT_Ubi 8828 7628 8025 20190821_JH_MUT_Ubi 8828 7628 8025 20190821_JH_MUT_Ubi 8828 sp|O95183|VAMP5_HUMAN 47 sp|O95183|VAMP5_HUMAN sp|O95183|VAMP5_HUMAN sp|O95183|VAMP5_HUMAN Vesicle-associated membrane protein 5 OS=Homo sapiens OX=9606 GN=VAMP5 PE=1 SV=1 1 63.0443 2.50981E-45 188.54 140.03 63.044 1 159.401 8.61229E-29 159.4 1 115.906 2.6188E-08 115.91 1 188.543 2.50981E-45 188.54 1 63.0443 0.0106949 63.044 1 77.3565 0.000568424 77.357 1 M VKLAELQQRSDQLLDMSSTFNKTTQNLAQKK X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Deamidation (NQ);GlyGly (K);X;X;Deamidation (NQ);Deamidation (NQ);X;X;Deamidation (NQ);X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPX SDQLLDM(1)SSTFNKTTQNLAQK SDQLLDM(63.04)SSTFNKTTQNLAQK 7 3 3.6937 31896000 31896000 0 0 1.3057 5294800 3511100 12910000 0 0 6745400 0 0 0 NaN 1.6521 1.3054 NaN NaN 2.9519 0 0 0 5294800 0 0 3511100 0 0 12910000 0 0 0 0 0 0 0 0 6745400 0 0 0 0 0 0 0 0 0 0 0 154 329 47 47 3859 4382;4383 12223;12224;12225;12226;12227 12818;12819;12820;12821;12822;12823 12227 12823 20190902_JH_EV_Ubi_3 8252 12226 12822 20190821_JH_WT_Ubi 7741 12226 12822 20190821_JH_WT_Ubi 7741 sp|O95202|LETM1_HUMAN 515 sp|O95202|LETM1_HUMAN sp|O95202|LETM1_HUMAN sp|O95202|LETM1_HUMAN Mitochondrial proton/calcium exchanger protein OS=Homo sapiens OX=9606 GN=LETM1 PE=1 SV=1 1 53.5891 0.0172055 53.589 28.688 53.589 1 53.5891 0.0172055 53.589 1 M VVAAPQRPGTEPQPEMPDTVLQSETLKDTAP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX VVAAPQRPGTEPQPEM(1)PDTVLQSETLK VVAAPQRPGTEPQPEM(53.59)PDTVLQSETLK 16 3 2.8269 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 155 331 515 515 5047 5732 16280 17111 16280 17111 20190821_JH_WT_Ubi 7838 16280 17111 20190821_JH_WT_Ubi 7838 16280 17111 20190821_JH_WT_Ubi 7838 sp|O95239-2|KIF4A_HUMAN;sp|O95239|KIF4A_HUMAN 416;416 sp|O95239-2|KIF4A_HUMAN sp|O95239-2|KIF4A_HUMAN sp|O95239-2|KIF4A_HUMAN Isoform 2 of Chromosome-associated kinesin KIF4A OS=Homo sapiens OX=9606 GN=KIF4A;sp|O95239|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens OX=9606 GN=KIF4A PE=1 SV=3 1 74.2369 0.0257192 74.237 30.818 74.237 1 74.2369 0.0257192 74.237 1 M KLSRGLSEAAGQTAQMLERIILTEQANEKMN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPXXXXXXXXXXXX GLSEAAGQTAQM(1)LER GLSEAAGQTAQM(74.24)LER 12 2 -0.077923 1244800 1244800 0 0 NaN 0 0 0 0 0 1244800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1244800 0 0 0 0 0 0 0 0 0 0 0 156 333 416 416 1607 1831 5147 5419 5147 5419 20190902_JH_MUT_Ubi_2 7888 5147 5419 20190902_JH_MUT_Ubi_2 7888 5147 5419 20190902_JH_MUT_Ubi_2 7888 sp|O95363|SYFM_HUMAN 233 sp|O95363|SYFM_HUMAN sp|O95363|SYFM_HUMAN sp|O95363|SYFM_HUMAN Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=FARS2 PE=1 SV=1 1 51.7707 0.0308537 51.771 13.158 51.771 1 51.7707 0.0308537 51.771 1 M FEQSSRSAHKQETHTMEAVKLVEFDLKQTLT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPXXXX QETHTM(1)EAVKLVEFDLK QETHTM(51.77)EAVKLVEFDLK 6 3 -2.1967 10120000 10120000 0 0 NaN 0 0 0 0 0 0 0 10120000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10120000 0 0 0 0 0 157 339 233 233 3622 4131 11625 12202 11625 12202 20190902_JH_WT_Ubi_2 12697 11625 12202 20190902_JH_WT_Ubi_2 12697 11625 12202 20190902_JH_WT_Ubi_2 12697 sp|O95373|IPO7_HUMAN 435 sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens OX=9606 GN=IPO7 PE=1 SV=1 1 180.948 6.17722E-26 180.95 116.98 180.95 1 146.844 2.43519E-11 146.84 1 80.6319 0.00247862 80.632 1 130.658 8.8101E-08 130.66 1 146.586 4.72053E-11 146.59 1 83.8564 0.00190896 83.856 1 125.217 1.93698E-07 125.22 1 180.948 6.17722E-26 180.95 1 M TEPNADPRKKDGALHMIGSLAEILLKKKIYK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX DGALHM(1)IGSLAEILLK DGALHM(180.95)IGSLAEILLK 6 3 -0.1783 20897000 20897000 0 0 3.0061 4334300 0 0 2179800 3577000 1893800 2438500 2422500 4051400 2.6212 0 0 NaN NaN NaN NaN NaN NaN 4334300 0 0 0 0 0 0 0 0 2179800 0 0 3577000 0 0 1893800 0 0 2438500 0 0 2422500 0 0 4051400 0 0 158 341 435 435 474 550 1503;1504;1505;1506;1507;1508;1509 1596;1597;1598;1599;1600;1601;1602 1509 1602 20190902_JH_WT_Ubi_3 15087 1509 1602 20190902_JH_WT_Ubi_3 15087 1509 1602 20190902_JH_WT_Ubi_3 15087 sp|O95373|IPO7_HUMAN 543 sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens OX=9606 GN=IPO7 PE=1 SV=1 1 81.7707 0.0117775 81.771 54.723 81.771 1 81.7707 0.0117775 81.771 1 M QEKAKEYITPFIRPVMQALLHIIRETENDDL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX PVM(1)QALLHIIR PVM(81.77)QALLHIIR 3 3 -0.20568 1219000 1219000 0 0 NaN 0 0 1219000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1219000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159 341 543 543 3562 4060 11445 12019 11445 12019 20190821_JH_WT_Ubi 8020 11445 12019 20190821_JH_WT_Ubi 8020 11445 12019 20190821_JH_WT_Ubi 8020 sp|O95373|IPO7_HUMAN 174 sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens OX=9606 GN=IPO7 PE=1 SV=1 1 62.8909 0.00309301 82.705 58.146 62.891 1 74.9873 0.00526861 74.987 1 82.7048 0.00309301 82.705 1 58.0983 0.0205822 58.098 1 70.6282 0.00851576 70.628 1 62.8909 0.0144934 62.891 1 M YEYKKPEERSPLVAAMQHFLPVLKDRFIQLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPXXXXXXX SPLVAAM(1)QHFLPVLK SPLVAAM(62.89)QHFLPVLK 7 3 0.24183 12573000 12573000 0 0 1.1429 2160600 2950400 0 1566000 0 3630600 2265200 0 0 1.5336 1.0347 0 NaN NaN 1.5788 NaN 0 0 2160600 0 0 2950400 0 0 0 0 0 1566000 0 0 0 0 0 3630600 0 0 2265200 0 0 0 0 0 0 0 0 160 341 174 174 4105 4658 12959;12960;12961;12962;12963 13588;13589;13590;13591;13592 12963 13592 20190902_JH_MUT_Ubi_3 10276 12961 13590 20190821_JH_MUT_Ubi 9702 12961 13590 20190821_JH_MUT_Ubi 9702 sp|O95782-2|AP2A1_HUMAN;sp|O95782|AP2A1_HUMAN 201;201 sp|O95782-2|AP2A1_HUMAN sp|O95782-2|AP2A1_HUMAN sp|O95782-2|AP2A1_HUMAN Isoform B of AP-2 complex subunit alpha-1 OS=Homo sapiens OX=9606 GN=AP2A1;sp|O95782|AP2A1_HUMAN AP-2 complex subunit alpha-1 OS=Homo sapiens OX=9606 GN=AP2A1 PE=1 SV=3 1 49.5771 0.00233717 59.356 39.634 49.577 1 59.3561 0.00233717 59.356 1 49.5771 0.00732013 49.577 1 M GEWTARVVHLLNDQHMGVVTAAVSLITCLCK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP VVHLLNDQHM(1)GVVTAAVSLITCLCK VVHLLNDQHM(49.58)GVVTAAVSLITCLCK 10 4 -0.50633 25949000 25949000 0 0 NaN 0 0 23859000 0 0 0 0 2089800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 23859000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2089800 0 0 0 0 0 161 357 201 201 5057 5747 16320;16321 17153;17154 16321 17154 20190902_JH_WT_Ubi_2 14360 16320 17153 20190821_JH_WT_Ubi 13176 16320 17153 20190821_JH_WT_Ubi 13176 sp|O95831-4|AIFM1_HUMAN;sp|O95831-2|AIFM1_HUMAN;sp|O95831-3|AIFM1_HUMAN;sp|O95831|AIFM1_HUMAN 1;1;1;1 sp|O95831-4|AIFM1_HUMAN sp|O95831-4|AIFM1_HUMAN sp|O95831-4|AIFM1_HUMAN Isoform 4 of Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens OX=9606 GN=AIFM1;sp|O95831-2|AIFM1_HUMAN Isoform 2 of Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens OX=9606 GN=AIFM1;sp|O95831-3|AIFM1_HUMAN Isofor 1 46.5921 0.0171433 57.019 15.619 46.592 1 43.5437 0.029577 43.544 1 47.2879 0.02584 47.288 1 57.0193 0.0171433 57.019 1 47.2879 0.02584 47.288 1 46.5921 0.0265344 46.592 1 M _______________MFRCGGLAAGALKQKL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPXXX M(1)FRCGGLAAGALK M(46.59)FRCGGLAAGALK 1 3 0.3922 251300000 251300000 0 0 NaN 0 0 85318000 0 0 5114200 4751500 92547000 61693000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 85318000 0 0 0 0 0 0 0 0 5114200 0 0 4751500 0 0 92547000 0 0 61693000 0 0 162 363 1 1 2912 3308 9387;9388;9389;9390;9391;9392;9393 9881;9882;9883;9884;9885;9886;9887 9393 9887 20190902_JH_WT_Ubi_3 10849 9388 9882 20190902_JH_MUT_Ubi_3 9648 9388 9882 20190902_JH_MUT_Ubi_3 9648 sp|O95841|ANGL1_HUMAN 83 sp|O95841|ANGL1_HUMAN sp|O95841|ANGL1_HUMAN sp|O95841|ANGL1_HUMAN Angiopoietin-related protein 1 OS=Homo sapiens OX=9606 GN=ANGPTL1 PE=2 SV=1 1 53.001 0.025164 53.001 16.556 53.001 1 53.001 0.025164 53.001 M TKGQDASTIKDMITRMDLENLKDVLSRQKRE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;X;X;Deamidation (NQ);GlyGly (K);X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPXX M(1)DLENLKDVLSRQK M(53)DLENLKDVLSRQK 1 3 4.0116 4215700 4215700 0 0 NaN 0 0 4215700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4215700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163 366 83 83 2883 3272 9284 9770 9284 9770 20190821_JH_WT_Ubi 10339 9284 9770 20190821_JH_WT_Ubi 10339 9284 9770 20190821_JH_WT_Ubi 10339 sp|O95994|AGR2_HUMAN 73 sp|O95994|AGR2_HUMAN sp|O95994|AGR2_HUMAN sp|O95994|AGR2_HUMAN Anterior gradient protein 2 homolog OS=Homo sapiens OX=9606 GN=AGR2 PE=1 SV=1 1 106.424 2.82832E-05 108.66 58.604 106.42 1 45.084 0.0175942 48.729 1 60.9678 0.00669163 60.968 1 48.8985 0.0173501 48.899 1 55.7818 0.0105497 55.782 1 91.207 0.000269856 91.207 1 54.3933 0.0115826 54.393 1 108.657 2.82832E-05 108.66 1 53.168 0.0138286 53.168 1 106.424 4.73041E-05 106.42 1 M YEEALYKSKTSNKPLMIIHHLDECPHSQALK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP PLM(1)IIHHLDECPHSQALK PLM(106.42)IIHHLDECPHSQALK 3 4 -0.58239 438680000 438680000 0 0 1.5422 86544000 22460000 7570900 78244000 0 76513000 0 0 0 1.1287 0.77394 1.2547 2.1491 0 1.8758 0 NaN NaN 86544000 0 0 22460000 0 0 7570900 0 0 78244000 0 0 0 0 0 76513000 0 0 0 0 0 0 0 0 0 0 0 164 367 73 73 3440 3925 11028;11029;11030;11031;11032;11033;11034;11035;11036;11037 11593;11594;11595;11596;11597;11598;11599;11600;11601;11602 11037 11602 20190902_JH_WT_Ubi_3 7223 11034 11599 20190902_JH_MUT_Ubi_3 6088 11034 11599 20190902_JH_MUT_Ubi_3 6088 sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN 264;293;206 sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA PE=1 SV=2;sp|P00338-3|LDHA_HUMAN Isoform 3 of L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA;sp|P00338-4|LDHA_HUMAN Isoform 4 of L-lactate dehydrogenase A 1 74.1469 0.00112237 74.147 37.064 74.147 1 74.1469 0.00112237 74.147 1 M SWAIGLSVADLAESIMKNLRRVHPVSTMIKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GYTSWAIGLSVADLAESIM(1)K GYTSWAIGLSVADLAESIM(74.15)K 19 3 -0.355 7224500 7224500 0 0 NaN 0 0 7224500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7224500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 165 373 264 264 1779 2020 5665 5966 5665 5966 20190821_JH_WT_Ubi 15734 5665 5966 20190821_JH_WT_Ubi 15734 5665 5966 20190821_JH_WT_Ubi 15734 sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN 33;62;33;33;33 sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA PE=1 SV=2;sp|P00338-3|LDHA_HUMAN Isoform 3 of L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA;sp|P00338-4|LDHA_HUMAN Isoform 4 of L-lactate dehydrogenase A 1 183.885 1.30841E-49 204.81 170.39 183.88 1 179.095 3.49795E-31 179.09 1 204.81 1.30841E-49 204.81 1 184.223 2.16514E-39 184.22 1 124.908 3.16772E-09 124.91 1 193.411 3.21272E-40 193.41 1 192.162 5.72007E-40 192.16 1 164.53 7.41857E-24 164.53 1 183.885 2.23304E-39 183.88 1;2 M TPQNKITVVGVGAVGMACAISILMKDLADEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX ITVVGVGAVGM(1)ACAISILM(1)K ITVVGVGAVGM(183.88)ACAISILM(183.88)K 11 3 -1.0791 114020000 13507000 100520000 0 5.7017 4244200 15860000 30727000 1106400 0 18119000 12560000 11957000 19450000 NaN 1.6111 3.0261 NaN NaN NaN NaN NaN NaN 0 4244200 0 3700700 12159000 0 5642500 25084000 0 0 1106400 0 0 0 0 1590100 16529000 0 1155000 11406000 0 0 11957000 0 1418800 18031000 0 166 373 33 33 2283 2596;2597 7477;7478;7479;7480;7481;7482;7483;7484;7486;7488;7490;7492;7495 7862;7863;7864;7865;7866;7867;7868;7869;7870;7872;7874;7876;7878;7879;7882 7484 7870 20190902_JH_WT_Ubi_3 13953 7479 7864 20190821_JH_MUT_Ubi 12517 7479 7864 20190821_JH_MUT_Ubi 12517 sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN 41;70;41;41;41 sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA PE=1 SV=2;sp|P00338-3|LDHA_HUMAN Isoform 3 of L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA;sp|P00338-4|LDHA_HUMAN Isoform 4 of L-lactate dehydrogenase A 1 183.814 2.42291E-73 229.69 180.15 229.69 1 179.095 3.49795E-31 179.09 1 204.81 1.30841E-49 204.81 1 183.814 2.42291E-73 229.69 1 124.908 3.16772E-09 124.91 1 193.411 3.21272E-40 193.41 1 192.162 5.72007E-40 192.16 1 164.53 7.41857E-24 164.53 1 183.885 2.23304E-39 183.88 1;2 M VGVGAVGMACAISILMKDLADELALVDVIED X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX ITVVGVGAVGMACAISILM(1)K ITVVGVGAVGM(-183.81)ACAISILM(183.81)K 19 3 -0.82199 189220000 88704000 100520000 0 9.4619 6305900 36824000 66289000 1106400 0 22494000 19749000 15055000 21399000 NaN 3.7405 6.5285 NaN NaN NaN NaN NaN NaN 2061700 4244200 0 24664000 12159000 0 41205000 25084000 0 0 1106400 0 0 0 0 5965500 16529000 0 8343100 11406000 0 3097100 11957000 0 3367900 18031000 0 167 373 41 41 2283 2596;2597 7477;7478;7479;7480;7481;7482;7483;7484;7485;7487;7489;7491;7493;7494;7496 7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7873;7875;7877;7880;7881;7883 7493 7880 20190821_JH_WT_Ubi 15412 7493 7880 20190821_JH_WT_Ubi 15412 7493 7880 20190821_JH_WT_Ubi 15412 sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN 204;233;146;204;204 sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN sp|P00338|LDHA_HUMAN L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA PE=1 SV=2;sp|P00338-3|LDHA_HUMAN Isoform 3 of L-lactate dehydrogenase A chain OS=Homo sapiens OX=9606 GN=LDHA;sp|P00338-4|LDHA_HUMAN Isoform 4 of L-lactate dehydrogenase A 1 47.723 0.00176159 47.723 32.204 47.723 1 40.4626 0.00476275 40.463 1 47.723 0.00542605 47.723 1 47.3186 0.00176159 47.319 1 M VLGEHGDSSVPVWSGMNVAGVSLKTLHPDLG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LGVHPLSCHGWVLGEHGDSSVPVWSGM(1)NVAGVSLK LGVHPLSCHGWVLGEHGDSSVPVWSGM(47.72)NVAGVSLK 27 3 3.4384 109160000 109160000 0 0 0.15611 0 3913500 0 0 0 0 0 0 0 0 0.071803 0 NaN NaN 0 0 0 0 0 0 0 3913500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168 373 204 204 2630 2990;2991 8536;8537;8538 8977;8978;8979 8538 8979 20190821_JH_WT_Ubi 10809 8538 8979 20190821_JH_WT_Ubi 10809 8537 8978 20190902_JH_MUT_Ubi_3 10740 sp|P00367|DHE3_HUMAN;sp|P00367-2|DHE3_HUMAN;sp|P00367-3|DHE3_HUMAN 290;123;157 sp|P00367|DHE3_HUMAN sp|P00367|DHE3_HUMAN sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens OX=9606 GN=GLUD1 PE=1 SV=2;sp|P00367-2|DHE3_HUMAN Isoform 2 of Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens OX=9606 GN=GLUD1;sp|P00367-3|DHE3_HUMAN Isoform 3 of Gluta 1 77.1688 5.10686E-05 77.169 53.494 77.169 1 45.1404 0.00992224 45.14 1 77.1688 5.10686E-05 77.169 2 M GVFHGIENFINEASYMSILGMTPGFGDKTFV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX GVFHGIENFINEASYM(1)SILGM(1)TPGFGDK GVFHGIENFINEASYM(77.17)SILGM(77.17)TPGFGDK 16 3 0.79242 7960200 0 7960200 0 NaN 0 0 4793000 0 0 0 0 3167200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4793000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3167200 0 0 0 0 169 374 290 290 1740 1980 5548;5549 5839;5840 5549 5840 20190902_JH_WT_Ubi_2 15760 5549 5840 20190902_JH_WT_Ubi_2 15760 5549 5840 20190902_JH_WT_Ubi_2 15760 sp|P00367|DHE3_HUMAN;sp|P00367-2|DHE3_HUMAN;sp|P00367-3|DHE3_HUMAN 295;128;162 sp|P00367|DHE3_HUMAN sp|P00367|DHE3_HUMAN sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens OX=9606 GN=GLUD1 PE=1 SV=2;sp|P00367-2|DHE3_HUMAN Isoform 2 of Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens OX=9606 GN=GLUD1;sp|P00367-3|DHE3_HUMAN Isoform 3 of Gluta 1 77.1688 5.10686E-05 77.169 53.494 77.169 1 45.1404 0.00992224 45.14 1 77.1688 5.10686E-05 77.169 2 M IENFINEASYMSILGMTPGFGDKTFVVQGFG X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX GVFHGIENFINEASYM(1)SILGM(1)TPGFGDK GVFHGIENFINEASYM(77.17)SILGM(77.17)TPGFGDK 21 3 0.79242 7960200 0 7960200 0 NaN 0 0 4793000 0 0 0 0 3167200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4793000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3167200 0 0 0 0 170 374 295 295 1740 1980 5548;5549 5839;5840 5549 5840 20190902_JH_WT_Ubi_2 15760 5549 5840 20190902_JH_WT_Ubi_2 15760 5549 5840 20190902_JH_WT_Ubi_2 15760 sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN 246;246;203;246;246 sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN Isoform 4 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-4|GSHR_HUMAN Isoform 3 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-2|GSHR_HUMAN Isoform Cytoplasmic of Gl 1 60.7608 0.00369494 67.552 37.445 60.761 1 67.5522 0.00580755 67.552 1 60.7608 0.00369494 60.761 1 42.9413 0.0306354 42.941 1 M PGRSVIVGAGYIAVEMAGILSALGSKTSLMI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPXXXXX SVIVGAGYIAVEM(1)AGILSALGSK SVIVGAGYIAVEM(60.76)AGILSALGSK 13 3 -1.6094 5080500 5080500 0 0 NaN 1476200 0 3186700 0 0 0 417590 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1476200 0 0 0 0 0 3186700 0 0 0 0 0 0 0 0 0 0 0 417590 0 0 0 0 0 0 0 0 171 376 246 246 4214 4784 13325;13326;13327 13978;13979;13980 13327 13980 20190821_JH_WT_Ubi 15464 13325 13978 20190821_JH_EV_Ubi 14460 13327 13980 20190821_JH_WT_Ubi 15464 sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN 368;397;407;421;450 sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN Isoform 4 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-4|GSHR_HUMAN Isoform 3 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-2|GSHR_HUMAN Isoform Cytoplasmic of Gl 1 50.8967 0.0299869 50.897 15.123 50.897 1 50.8967 0.0299869 50.897 1 M YGIENVKTYSTSFTPMYHAVTKRKTKCVMKM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPXXXXXXXXX TYSTSFTPM(1)YHAVTK TYSTSFTPM(50.9)YHAVTK 9 3 -0.30942 2607700 2607700 0 0 NaN 0 0 0 0 0 2607700 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2607700 0 0 0 0 0 0 0 0 0 0 0 172 376 368 368 4700 5333 15082 15849 15082 15849 20190902_JH_MUT_Ubi_2 7000 15082 15849 20190902_JH_MUT_Ubi_2 7000 15082 15849 20190902_JH_MUT_Ubi_2 7000 sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN 397;426;436;450;479 sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN Isoform 4 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-4|GSHR_HUMAN Isoform 3 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-2|GSHR_HUMAN Isoform Cytoplasmic of Gl 1 55.2087 1.75756E-06 96.848 54.78 55.209 1 54.6677 0.00683435 54.668 1 96.8478 1.75756E-06 96.848 1 55.2087 0.0065306 55.209 2 M KMVCANKEEKVVGIHMQGLGCDEMLQGFAVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP VVGIHM(1)QGLGCDEM(1)LQGFAVAVK VVGIHM(55.21)QGLGCDEM(55.21)LQGFAVAVK 6 3 -0.36403 3891500 0 3891500 0 1.3913 1583500 0 0 1304400 1003600 0 0 0 0 1.4171 0 NaN NaN NaN NaN NaN NaN NaN 0 1583500 0 0 0 0 0 0 0 0 1304400 0 0 1003600 0 0 0 0 0 0 0 0 0 0 0 0 0 173 376 397 397 5054 5741;5742 16305;16306;16307 17137;17138;17139 16307 17139 20190902_JH_EV_Ubi_3 9749 16306 17138 20190902_JH_EV_Ubi_2 9821 16306 17138 20190902_JH_EV_Ubi_2 9821 sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN 405;434;444;458;487 sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN sp|P00390-5|GSHR_HUMAN Isoform 4 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-4|GSHR_HUMAN Isoform 3 of Glutathione reductase, mitochondrial OS=Homo sapiens OX=9606 GN=GSR;sp|P00390-2|GSHR_HUMAN Isoform Cytoplasmic of Gl 1 55.2087 1.75756E-06 96.848 54.78 55.209 1 54.6677 0.00212899 63.454 1 96.8478 1.75756E-06 96.848 1 55.2087 0.0065306 55.209 1;2 M EKVVGIHMQGLGCDEMLQGFAVAVKMGATKA X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPXXXXXX VVGIHM(1)QGLGCDEM(1)LQGFAVAVK VVGIHM(55.21)QGLGCDEM(55.21)LQGFAVAVK 14 3 -0.36403 5169600 1278000 3891500 0 1.8483 2861500 0 0 1304400 1003600 0 0 0 0 2.5609 0 NaN NaN NaN NaN NaN NaN NaN 1278000 1583500 0 0 0 0 0 0 0 0 1304400 0 0 1003600 0 0 0 0 0 0 0 0 0 0 0 0 0 174 376 405 405 5054 5741;5742 16305;16306;16307;16308 17137;17138;17139;17140 16307 17139 20190902_JH_EV_Ubi_3 9749 16306 17138 20190902_JH_EV_Ubi_2 9821 16306 17138 20190902_JH_EV_Ubi_2 9821 sp|P00403|COX2_HUMAN 152 sp|P00403|COX2_HUMAN sp|P00403|COX2_HUMAN sp|P00403|COX2_HUMAN Cytochrome c oxidase subunit 2 OS=Homo sapiens OX=9606 GN=MT-CO2 PE=1 SV=1 1 48.8239 7.58192E-05 94.387 57.749 48.824 0.861377 7.93359 7.58192E-05 94.387 1 48.8239 0.0186616 48.824 1;2 M DVDNRVVLPIEAPIRMMITSQDVLHSWAVPT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)M(1)ITSQDVLHSWAVPTLGLK M(48.82)M(48.82)ITSQDVLHSWAVPTLGLK 1 3 3.2281 14843000 5605100 9238000 0 NaN 5605100 0 0 0 9238000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 5605100 0 0 0 0 0 0 0 0 0 0 0 0 9238000 0 0 0 0 0 0 0 0 0 0 0 0 0 175 377 152 152 2948 3352;3353 9493;9494 9993;9994 9494 9994 20190902_JH_EV_Ubi_3 11605 9493 9993 20190821_JH_EV_Ubi 13070 9493 9993 20190821_JH_EV_Ubi 13070 sp|P00403|COX2_HUMAN 153 sp|P00403|COX2_HUMAN sp|P00403|COX2_HUMAN sp|P00403|COX2_HUMAN Cytochrome c oxidase subunit 2 OS=Homo sapiens OX=9606 GN=MT-CO2 PE=1 SV=1 1 48.8239 0.0186616 48.824 20.244 48.824 1 48.8239 0.0186616 48.824 2 M VDNRVVLPIEAPIRMMITSQDVLHSWAVPTL X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP M(1)M(1)ITSQDVLHSWAVPTLGLK M(48.82)M(48.82)ITSQDVLHSWAVPTLGLK 2 3 3.2281 9238000 0 9238000 0 NaN 0 0 0 0 9238000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 9238000 0 0 0 0 0 0 0 0 0 0 0 0 0 176 377 153 153 2948 3352;3353 9494 9994 9494 9994 20190902_JH_EV_Ubi_3 11605 9494 9994 20190902_JH_EV_Ubi_3 11605 9494 9994 20190902_JH_EV_Ubi_3 11605 sp|P00492|HPRT_HUMAN 57 sp|P00492|HPRT_HUMAN sp|P00492|HPRT_HUMAN sp|P00492|HPRT_HUMAN Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens OX=9606 GN=HPRT1 PE=1 SV=2 1 95.4009 0.00135675 95.401 27.675 95.401 1 67.7494 0.0109707 67.749 1 95.4009 0.00135675 95.401 1 M IMDRTERLARDVMKEMGGHHIVALCVLKGGY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX EM(1)GGHHIVALCVLK EM(95.4)GGHHIVALCVLK 2 4 1.043 15946000 15946000 0 0 NaN 0 0 6170000 0 0 0 0 9776400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6170000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9776400 0 0 0 0 0 177 380 57 57 1033 1163 3281;3282 3449;3450 3282 3450 20190902_JH_WT_Ubi_2 7974 3282 3450 20190902_JH_WT_Ubi_2 7974 3282 3450 20190902_JH_WT_Ubi_2 7974 sp|P00505-2|AATM_HUMAN;sp|P00505|AATM_HUMAN 272;315 sp|P00505-2|AATM_HUMAN sp|P00505-2|AATM_HUMAN sp|P00505-2|AATM_HUMAN Isoform 2 of Aspartate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=GOT2;sp|P00505|AATM_HUMAN Aspartate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=GOT2 PE=1 SV=3 1 92.6498 0.00312725 92.65 51.072 92.65 1 81.703 0.00779726 81.703 1 92.6498 0.00312725 92.65 1 M EAKRVESQLKILIRPMYSNPPLNGARIAAAI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX ILIRPM(1)YSNPPLNGAR ILIRPM(92.65)YSNPPLNGAR 6 3 -0.62646 4741500 4741500 0 0 NaN 2263600 0 0 0 2477900 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2263600 0 0 0 0 0 0 0 0 0 0 0 2477900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178 381 272 272 2198 2506 7262;7263 7639;7640 7263 7640 20190902_JH_EV_Ubi_3 7594 7263 7640 20190902_JH_EV_Ubi_3 7594 7263 7640 20190902_JH_EV_Ubi_3 7594 sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN 33;61 sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN Isoform 2 of Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1;sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1 PE=1 SV=3 1 83.8942 0.0013722 83.894 61.419 83.894 1 63.6142 0.0145662 63.614 0.994417 22.5073 0.0178174 63.894 1 56.7991 0.0319346 56.799 1 76.1579 0.00292241 76.158 1 77.0274 0.00274819 77.027 1 83.8942 0.0013722 83.894 1;2 M SIKFCLDNGAKSVVLMSHLGRPDGVPMPDKY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPX SVVLM(1)SHLGRPDGVPM(1)PDK SVVLM(83.89)SHLGRPDGVPM(83.89)PDK 5 3 -0.68422 100580000 25307000 75278000 0 2.5435 0 2501300 11750000 0 3298800 9150600 0 45608000 28276000 NaN 0.51483 0.33873 NaN NaN NaN NaN NaN NaN 0 0 0 0 2501300 0 11750000 0 0 0 0 0 0 3298800 0 2113700 7036900 0 0 0 0 11443000 34165000 0 0 28276000 0 179 383 33 33 4225 4796;4798 13353;13354;13355;13356;13357;13360;13361;13362 14007;14008;14009;14010;14011;14014;14015;14016 13357 14011 20190902_JH_WT_Ubi_3 7605 13357 14011 20190902_JH_WT_Ubi_3 7605 13357 14011 20190902_JH_WT_Ubi_3 7605 sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN 44;72 sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN Isoform 2 of Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1;sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1 PE=1 SV=3 1 83.8942 0.0013722 83.894 61.419 83.894 1 63.6142 0.0145662 63.614 1 56.7991 0.0319346 56.799 1 76.1579 0.00292241 76.158 1 77.0274 0.00274819 77.027 1 83.8942 0.0013722 83.894 2 M SVVLMSHLGRPDGVPMPDKYSLEPVAVELKS X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SVVLM(1)SHLGRPDGVPM(1)PDK SVVLM(83.89)SHLGRPDGVPM(83.89)PDK 16 3 -0.68422 75278000 0 75278000 0 1.9035 0 2501300 0 0 3298800 7036900 0 34165000 28276000 NaN 0.51483 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 2501300 0 0 0 0 0 0 0 0 3298800 0 0 7036900 0 0 0 0 0 34165000 0 0 28276000 0 180 383 44 44 4225 4796;4798 13353;13354;13355;13356;13357 14007;14008;14009;14010;14011 13357 14011 20190902_JH_WT_Ubi_3 7605 13357 14011 20190902_JH_WT_Ubi_3 7605 13357 14011 20190902_JH_WT_Ubi_3 7605 sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN 284;312 sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN Isoform 2 of Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1;sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1 PE=1 SV=3 1 158.801 1.30266E-43 176.9 142.26 158.8 1 46.4596 1.71339E-21 146.91 1 133.407 3.0378E-16 133.41 1 79.762 4.37757E-10 106.06 1 176.905 1.30266E-43 176.9 1 152.026 3.71279E-26 152.03 1 124.656 2.89237E-26 153.59 1 135.762 1.603E-20 145.16 1 149.738 3.12552E-26 149.74 1 158.801 9.6757E-28 158.8 1 M KTGQATVASGIPAGWMGLDCGPESSKKYAEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX TGQATVASGIPAGWM(1)GLDCGPESSKK TGQATVASGIPAGWM(158.8)GLDCGPESSKK 15 3 0.14056 179470000 179470000 0 0 3.3676 9873200 7063100 27125000 8922900 10356000 10329000 7749800 35335000 34648000 4.3416 1.6548 1.2189 6.2193 9.1367 3.8371 2.5536 4.3272 4.313 9873200 0 0 7063100 0 0 27125000 0 0 8922900 0 0 10356000 0 0 10329000 0 0 7749800 0 0 35335000 0 0 34648000 0 0 181 383 284 284 4384;4385 4969;4971 13862;13863;13864;13865;13866;13867;13868;13869;13870;13880;13881;13882;13883;13884;13885;13886 14545;14546;14547;14548;14549;14550;14551;14552;14553;14554;14565;14566;14567;14568;14569;14570;14571;14572 13886 14572 20190902_JH_WT_Ubi_3 10343 13863 14546 20190902_JH_EV_Ubi_2 10394 13863 14546 20190902_JH_EV_Ubi_2 10394 sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN 223;251 sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN sp|P00558-2|PGK1_HUMAN Isoform 2 of Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1;sp|P00558|PGK1_HUMAN Phosphoglycerate kinase 1 OS=Homo sapiens OX=9606 GN=PGK1 PE=1 SV=3 1 83.3934 0.000235585 89.877 53.856 83.393 1 76.0266 0.000641749 76.027 1 51.5244 0.0189733 51.524 1 61.0872 0.0072405 61.087 1 83.3934 0.000235585 83.393 1 58.6347 0.0115508 58.635 1 89.8772 0.000367312 89.877 1 M IGGGMAFTFLKVLNNMEIGTSLFDEEGAKIV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP VLNNM(1)EIGTSLFDEEGAKIVK VLNNM(83.39)EIGTSLFDEEGAKIVK 5 3 1.2193 13278000 13278000 0 0 0.54262 0 1774000 0 1498500 0 2074300 1441300 0 0 NaN 0.88941 0 NaN NaN NaN NaN NaN 0 0 0 0 1774000 0 0 0 0 0 1498500 0 0 0 0 0 2074300 0 0 1441300 0 0 0 0 0 0 0 0 182 383 223 223 4916;4917 5582;5584 15807;15808;15810;15811;15812;15813 16611;16612;16614;16615;16616;16617 15813 16617 20190902_JH_MUT_Ubi_3 10289 15808 16612 20190902_JH_WT_Ubi_3 11783 15813 16617 20190902_JH_MUT_Ubi_3 10289 sp|P02786|TFR1_HUMAN 38 sp|P02786|TFR1_HUMAN sp|P02786|TFR1_HUMAN sp|P02786|TFR1_HUMAN Transferrin receptor protein 1 OS=Homo sapiens OX=9606 GN=TFRC PE=1 SV=2 1 52.4651 0.000703285 70.449 55.796 52.465 1 63.6302 0.00140755 63.63 1 48.3314 0.0076946 48.331 1 70.4489 0.000703285 70.449 1 52.4651 0.00359075 52.465 1 M FSLARQVDGDNSHVEMKLAVDEEENADNNTK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K) XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP QVDGDNSHVEM(1)KLAVDEEENADNNTK QVDGDNSHVEM(52.47)KLAVDEEENADNNTK 11 4 -0.36269 8055000 8055000 0 0 0.63251 0 0 1129400 0 0 988300 0 0 0 NaN 0 0.2268 NaN NaN NaN NaN 0 NaN 0 0 0 0 0 0 1129400 0 0 0 0 0 0 0 0 988300 0 0 0 0 0 0 0 0 0 0 0 183 393 38 38 3711 4222 11790;11791;11792;11793 12371;12372;12373;12374 11793 12374 20190902_JH_WT_Ubi_2 7485 11791 12372 20190902_JH_MUT_Ubi_2 6333 11791 12372 20190902_JH_MUT_Ubi_2 6333 sp|P02795|MT2_HUMAN 1 sp|P02795|MT2_HUMAN sp|P02795|MT2_HUMAN sp|P02795|MT2_HUMAN Metallothionein-2 OS=Homo sapiens OX=9606 GN=MT2A PE=1 SV=1 1 76.8172 1.91148E-07 121.48 121.48 76.817 1 121.484 1.91148E-07 121.48 1 120.788 2.68972E-07 120.79 1 76.8172 0.000501461 76.817 1 M _______________MDPNCSCAAGDSCTCA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DPNCSCAAGDSCTCAGSCK M(76.82)DPNCSCAAGDSCTCAGSCK 1 3 -0.63414 10928000 10928000 0 0 NaN 0 0 2664400 0 0 0 0 4198700 4064400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2664400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4198700 0 0 4064400 0 0 184 394 1 1 2885 3274 9286;9287;9288 9772;9773;9774 9288 9774 20190902_JH_WT_Ubi_3 6914 9286 9772 20190821_JH_WT_Ubi 5225 9286 9772 20190821_JH_WT_Ubi 5225 sp|P03905|NU4M_HUMAN 229 sp|P03905|NU4M_HUMAN sp|P03905|NU4M_HUMAN sp|P03905|NU4M_HUMAN NADH-ubiquinone oxidoreductase chain 4 OS=Homo sapiens OX=9606 GN=MT-ND4 PE=1 SV=1 1 109.14 1.83693E-72 226.39 195.82 109.14 1 226.389 1.83693E-72 226.39 1 109.14 1.64175E-05 109.14 1 M LWLPKAHVEAPIAGSMVLAAVLLKLGGYGMM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX AHVEAPIAGSM(1)VLAAVLLK AHVEAPIAGSM(109.14)VLAAVLLK 11 3 1.2197 6462800 6462800 0 0 5.4655 3842000 0 0 0 0 0 0 0 2620800 3.2492 NaN NaN NaN NaN NaN NaN NaN NaN 3842000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2620800 0 0 185 395 229 229 153 176 525;526 576;577 526 577 20190902_JH_WT_Ubi_3 13511 525 576 20190821_JH_EV_Ubi 12632 525 576 20190821_JH_EV_Ubi 12632 sp|P03905|NU4M_HUMAN 207 sp|P03905|NU4M_HUMAN sp|P03905|NU4M_HUMAN sp|P03905|NU4M_HUMAN NADH-ubiquinone oxidoreductase chain 4 OS=Homo sapiens OX=9606 GN=MT-ND4 PE=1 SV=1 1 120.452 0.000434056 120.45 73.746 120.45 1 120.452 0.000434056 120.45 1 M NNLMWLAYTMAFMVKMPLYGLHLWLPKAHVE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX M(1)PLYGLHLWLPK M(120.45)PLYGLHLWLPK 1 3 -1.2055 4414200 4414200 0 0 NaN 0 0 4414200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4414200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 395 207 207 2953 3358 9502 10002 9502 10002 20190821_JH_WT_Ubi 11424 9502 10002 20190821_JH_WT_Ubi 11424 9502 10002 20190821_JH_WT_Ubi 11424 sp|P03915|NU5M_HUMAN 525 sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN NADH-ubiquinone oxidoreductase chain 5 OS=Homo sapiens OX=9606 GN=MT-ND5 PE=1 SV=2 1 154.482 4.38112E-22 154.48 119.55 154.48 1 127.006 3.15924E-11 127.01 1 154.482 4.38112E-22 154.48 1 M KLKMKSPLCTFYFSNMLGFYPSITHRTIPYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPXXXXX SPLCTFYFSNM(1)LGFYPSITHR SPLCTFYFSNM(154.48)LGFYPSITHR 11 3 -0.0064828 6518400 6518400 0 0 NaN 0 0 3386000 0 0 0 0 3132300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3386000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3132300 0 0 0 0 0 187 396 525 525 4104 4657 12957;12958 13586;13587 12958 13587 20190902_JH_WT_Ubi_2 14655 12958 13587 20190902_JH_WT_Ubi_2 14655 12958 13587 20190902_JH_WT_Ubi_2 14655 sp|P03915|NU5M_HUMAN 366 sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN NADH-ubiquinone oxidoreductase chain 5 OS=Homo sapiens OX=9606 GN=MT-ND5 PE=1 SV=2 1 55.0628 0.00164393 55.063 27.102 55.063 1 55.0628 0.00164393 55.063 2 M NNEQDIRKMGGLLKTMPLTSTSLTIGSLALA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP TM(1)PLTSTSLTIGSLALAGM(1)PFLTGFYSK TM(55.06)PLTSTSLTIGSLALAGM(55.06)PFLTGFYSK 2 3 -1.119 2495600 0 2495600 0 NaN 0 0 2495600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2495600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188 396 366 366 4521 5135 14421 15160 14421 15160 20190821_JH_WT_Ubi 15980 14421 15160 20190821_JH_WT_Ubi 15980 14421 15160 20190821_JH_WT_Ubi 15980 sp|P03915|NU5M_HUMAN 383 sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN sp|P03915|NU5M_HUMAN NADH-ubiquinone oxidoreductase chain 5 OS=Homo sapiens OX=9606 GN=MT-ND5 PE=1 SV=2 1 55.0628 0.00164393 55.063 27.102 55.063 1 55.0628 0.00164393 55.063 2 M LTSTSLTIGSLALAGMPFLTGFYSKDHIIET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX TM(1)PLTSTSLTIGSLALAGM(1)PFLTGFYSK TM(55.06)PLTSTSLTIGSLALAGM(55.06)PFLTGFYSK 19 3 -1.119 2495600 0 2495600 0 NaN 0 0 2495600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2495600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189 396 383 383 4521 5135 14421 15160 14421 15160 20190821_JH_WT_Ubi 15980 14421 15160 20190821_JH_WT_Ubi 15980 14421 15160 20190821_JH_WT_Ubi 15980 sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN 251;305 sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA PE=1 SV=2;sp|P04075-2|ALDOA_HUMAN Isoform 2 of Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA 1 110.251 0.000162991 110.25 61.785 110.25 1 86.4978 0.00209101 86.498 1 110.251 0.000162991 110.25 1 M PGHACTQKFSHEEIAMATVTALRRTVPPAVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX FSHEEIAM(1)ATVTALR FSHEEIAM(110.25)ATVTALR 8 3 0.34363 20875000 20875000 0 0 0.97855 0 0 7960800 0 0 0 0 12915000 0 NaN NaN 0.64063 NaN NaN 0 NaN 1.9975 NaN 0 0 0 0 0 0 7960800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12915000 0 0 0 0 0 190 400 251 251 1299 1472 4100;4101 4310;4311 4101 4311 20190902_JH_WT_Ubi_2 9865 4101 4311 20190902_JH_WT_Ubi_2 9865 4101 4311 20190902_JH_WT_Ubi_2 9865 sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN 165;219 sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA PE=1 SV=2;sp|P04075-2|ALDOA_HUMAN Isoform 2 of Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA 1 121.722 4.30645E-10 133.86 90.674 121.72 1 71.402 0.00810715 71.402 1 56.9055 0.0100885 56.906 1 121.722 5.71936E-07 121.72 1 133.857 4.30645E-10 133.86 1 M CVLKIGEHTPSALAIMENANVLARYASICQQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ) XXXXPPPPPPPPPPPPPPPPPPPPXXXXXXX IGEHTPSALAIM(1)ENANVLAR IGEHTPSALAIM(121.72)ENANVLAR 12 3 0.92856 53985000 53985000 0 0 24.267 1502600 0 0 0 0 0 3359700 21133000 22813000 NaN NaN NaN NaN NaN NaN 1.5102 NaN NaN 1502600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3359700 0 0 21133000 0 0 22813000 0 0 191 400 165 165 2124 2422;2424 7047;7048;7049;7050;7052 7420;7421;7422;7423;7425 7052 7425 20190902_JH_WT_Ubi_2 11085 7050 7423 20190902_JH_WT_Ubi_3 10283 7050 7423 20190902_JH_WT_Ubi_3 10283 sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN 233;287 sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN sp|P04075|ALDOA_HUMAN Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA PE=1 SV=2;sp|P04075-2|ALDOA_HUMAN Isoform 2 of Fructose-bisphosphate aldolase A OS=Homo sapiens OX=9606 GN=ALDOA 1 57.4251 0.00300123 94.023 23.535 57.425 1 94.0232 0.00300123 94.023 1 79.8861 0.00749313 79.886 1 85.2711 0.00497566 85.536 1 78.2874 0.00820553 78.287 1 88.2244 0.00403843 88.224 1 57.4251 0.0293391 57.425 1 M SDHHIYLEGTLLKPNMVTPGHACTQKFSHEE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPXXXXX PNM(1)VTPGHACTQK PNM(57.43)VTPGHACTQK 3 3 -0.49751 29847000 29847000 0 0 0.79311 1210200 479540 17188000 1567100 1355700 0 0 0 5460600 NaN NaN 1.8894 NaN NaN NaN NaN 0 0.2924 1210200 0 0 479540 0 0 17188000 0 0 1567100 0 0 1355700 0 0 0 0 0 0 0 0 0 0 0 5460600 0 0 192 400 233 233 3479 3967 11165;11166;11167;11168;11169;11170;11171 11732;11733;11734;11735;11736;11737;11738 11171 11738 20190902_JH_WT_Ubi_3 3233 11165 11732 20190821_JH_EV_Ubi 2638 11165 11732 20190821_JH_EV_Ubi 2638 sp|P04080|CYTB_HUMAN 1 sp|P04080|CYTB_HUMAN sp|P04080|CYTB_HUMAN sp|P04080|CYTB_HUMAN Cystatin-B OS=Homo sapiens OX=9606 GN=CSTB PE=1 SV=2 1 51.6879 0.00178478 66.76 46.863 51.688 1 47.499 0.0204953 47.499 1 66.7603 0.00178478 66.76 1 51.6879 0.0104349 51.688 2 M _______________MMCGAPSATQPATAET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)M(1)CGAPSATQPATAETQHIADQVR M(51.69)M(51.69)CGAPSATQPATAETQHIADQVR 1 3 -0.31725 37573000 0 37573000 0 NaN 0 0 12514000 0 0 0 0 14933000 10126000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 12514000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14933000 0 0 10126000 0 193 401 1 1 2945 3347 9484;9485;9486 9984;9985;9986 9486 9986 20190902_JH_WT_Ubi_3 9626 9485 9985 20190902_JH_WT_Ubi_2 10081 9485 9985 20190902_JH_WT_Ubi_2 10081 sp|P04080|CYTB_HUMAN 2 sp|P04080|CYTB_HUMAN sp|P04080|CYTB_HUMAN sp|P04080|CYTB_HUMAN Cystatin-B OS=Homo sapiens OX=9606 GN=CSTB PE=1 SV=2 1 51.6879 0.00178478 66.76 46.863 51.688 1 47.499 0.0204953 47.499 1 66.7603 0.00178478 66.76 1 51.6879 0.0104349 51.688 2 M ______________MMCGAPSATQPATAETQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP M(1)M(1)CGAPSATQPATAETQHIADQVR M(51.69)M(51.69)CGAPSATQPATAETQHIADQVR 2 3 -0.31725 37573000 0 37573000 0 NaN 0 0 12514000 0 0 0 0 14933000 10126000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 12514000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14933000 0 0 10126000 0 194 401 2 2 2945 3347 9484;9485;9486 9984;9985;9986 9486 9986 20190902_JH_WT_Ubi_3 9626 9485 9985 20190902_JH_WT_Ubi_2 10081 9485 9985 20190902_JH_WT_Ubi_2 10081 sp|P04083|ANXA1_HUMAN 56 sp|P04083|ANXA1_HUMAN sp|P04083|ANXA1_HUMAN sp|P04083|ANXA1_HUMAN Annexin A1 OS=Homo sapiens OX=9606 GN=ANXA1 PE=1 SV=2 1 88.1897 0.00572376 88.19 60.693 88.19 1 88.1897 0.00572376 88.19 1 M TFNPSSDVAALHKAIMVKGVDEATIIDILTK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP AIM(1)VKGVDEATIIDILTK AIM(88.19)VKGVDEATIIDILTK 3 3 -0.33895 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 195 402 56 56 164 189 559 611 559 611 20190821_JH_WT_Ubi 13457 559 611 20190821_JH_WT_Ubi 13457 559 611 20190821_JH_WT_Ubi 13457 sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-2|SODM_HUMAN 47;47;47 sp|P04179-3|SODM_HUMAN sp|P04179-3|SODM_HUMAN sp|P04179-3|SODM_HUMAN Isoform 3 of Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens OX=9606 GN=SOD2;sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens OX=9606 GN=SOD2 PE=1 SV=3;sp|P04179-2|SODM_HUMAN Isoform 2 of Superox 1 42.0422 0.00965565 44.183 12.407 42.042 1 40.7557 0.0134518 40.756 1 40.0984 0.012801 40.098 1 44.1825 0.00971701 44.183 1 43.2926 0.00965565 43.293 1 42.0422 0.0108869 42.042 1 M PYDYGALEPHINAQIMQLHHSKHHAAYVNNL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX HSLPDLPYDYGALEPHINAQIM(1)QLHHSK HSLPDLPYDYGALEPHINAQIM(42.04)QLHHSK 22 5 1.0673 138600000 138600000 0 0 1.8429 0 0 58192000 0 0 0 0 28160000 45795000 NaN NaN 0.91802 NaN NaN NaN NaN NaN 3.876 0 0 0 0 0 0 58192000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28160000 0 0 45795000 0 0 196 405 47 47 1993 2270 6524;6525;6526;6527;6528 6864;6865;6866;6867;6868 6528 6868 20190902_JH_WT_Ubi_3 10943 6525 6865 20190902_JH_EV_Ubi_2 9576 6527 6867 20190902_JH_WT_Ubi_2 11434 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 105;63 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 47.8216 2.36311E-11 129.06 94.854 47.822 1 94.4498 7.40638E-06 94.45 1 43.9561 0.0332559 43.956 1 129.056 2.36311E-11 129.06 1 46.5776 0.0231008 46.578 1 47.8216 0.0205737 47.822 1 M AGAEYVVESTGVFTTMEKAGAHLQGGAKRVI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX WGDAGAEYVVESTGVFTTM(1)EK WGDAGAEYVVESTGVFTTM(47.82)EK 19 3 -1.0228 11062000 11062000 0 0 0.48788 4332500 0 0 2801800 0 1573700 1384900 0 0 NaN 0 0 4.4109 0 0.96374 3.7901 0 0 4332500 0 0 0 0 0 0 0 0 2801800 0 0 0 0 0 1573700 0 0 1384900 0 0 0 0 0 0 0 0 197 407 105 105 2177;5090 2482;5784 7204;16417;16418;16419;16420 7579;17251;17252;17253;17254 16420 17254 20190902_JH_MUT_Ubi_3 12330 16418 17252 20190902_JH_EV_Ubi_2 11670 16418 17252 20190902_JH_EV_Ubi_2 11670 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 130;88 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 50.9574 1.97409E-22 153.6 115.15 50.957 1 63.4432 2.37789E-06 95.624 1 64.2492 5.02739E-07 101.05 1 62.9163 2.41762E-16 142.54 1 58.29 5.8022E-05 86.761 1 61.6123 0.00217669 61.612 1 72.359 0.00104714 72.359 1 51.1657 0.01273 51.166 1 69.2885 1.10376E-08 111.6 1 50.9574 1.97409E-22 153.6 1;2 M GAKRVIISAPSADAPMFVMGVNHEKYDNSLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K) XXXPPPPPPPPPPPPPPPPPPPPPPXXXXXX VIISAPSADAPM(1)FVM(1)GVNHEK VIISAPSADAPM(50.96)FVM(50.96)GVNHEK 12 3 -0.29747 2555200000 514650000 2040600000 0 4.6513 157030000 95308000 596810000 211690000 41310000 178870000 120790000 496560000 565720000 3.5826 1.5974 2.4961 NaN 5.6556 7.5074 3.835 6.5492 8.2806 0 157030000 0 0 95308000 0 257760000 339050000 0 0 211690000 0 41310000 0 0 0 178870000 0 0 120790000 0 108680000 387880000 0 104720000 461000000 0 198 407 130 130 3810;4860 4327;4328;5517;5518 12043;12044;12045;12046;12047;12048;12050;15612;15613;15614;15615;15616;15617;15618;15619;15622;15626;15627;15628 12632;12633;12634;12635;12636;12637;12639;16408;16409;16410;16411;16412;16413;16414;16415;16418;16422;16423;16424 15619 16415 20190902_JH_WT_Ubi_3 10281 12048 12637 20190902_JH_WT_Ubi_3 9007 12048 12637 20190902_JH_WT_Ubi_3 9007 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 133;91 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 50.9574 1.97409E-22 156.7 115.74 50.957 1 63.4432 2.05481E-15 136.92 1 64.2492 2.0866E-11 131.41 1 62.9163 2.41762E-16 142.54 1 58.29 0.00513216 61.015 1 61.6123 0.00217669 61.612 1 72.359 3.10683E-08 114.63 1 51.1657 0.01273 51.166 1 69.2885 1.10376E-08 111.6 1 50.9574 1.97409E-22 156.7 1;2 M RVIISAPSADAPMFVMGVNHEKYDNSLKIIS X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX VIISAPSADAPM(1)FVM(1)GVNHEK VIISAPSADAPM(50.96)FVM(50.96)GVNHEK 15 3 -0.29747 2642200000 601610000 2040600000 0 4.8096 197000000 129210000 596810000 243350000 0 252090000 120790000 387880000 461000000 4.4943 2.1657 2.4961 NaN 0 10.581 3.835 5.1159 6.7478 39965000 157030000 0 33905000 95308000 0 257760000 339050000 0 31666000 211690000 0 0 0 0 73222000 178870000 0 0 120790000 0 0 387880000 0 0 461000000 0 199 407 133 133 3810;4860 4327;4328;5517;5518 12043;12044;12045;12046;12047;12048;12049;12051;12052;12053;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15623;15624;15625;15626 12632;12633;12634;12635;12636;12637;12638;12640;12641;12642;16408;16409;16410;16411;16412;16413;16414;16415;16416;16417;16419;16420;16421;16422 15619 16415 20190902_JH_WT_Ubi_3 10281 12053 12642 20190902_JH_WT_Ubi_3 9800 12048 12637 20190902_JH_WT_Ubi_3 9007 sp|P04406|G3P_HUMAN 43 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3 1 55.8707 0.00152113 55.871 35.631 55.871 1 55.8707 0.00152113 55.871 2 M VDIVAINDPFIDLNYMVYMFQYDSTHGKFHG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX VDIVAINDPFIDLNYM(1)VYM(1)FQYDSTHGK VDIVAINDPFIDLNYM(55.87)VYM(55.87)FQYDSTHGK 16 3 1.0325 2198200 0 2198200 0 0.33053 0 0 0 0 0 0 0 2198200 0 NaN NaN NaN NaN 0 NaN 0 1.6776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2198200 0 0 0 0 200 407 43 43 4750 5389 15231 16000 15231 16000 20190902_JH_WT_Ubi_2 16176 15231 16000 20190902_JH_WT_Ubi_2 16176 15231 16000 20190902_JH_WT_Ubi_2 16176 sp|P04406|G3P_HUMAN 46 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3 1 55.8707 0.00152113 55.871 35.631 55.871 1 55.8707 0.00152113 55.871 2 M VAINDPFIDLNYMVYMFQYDSTHGKFHGTVK X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX VDIVAINDPFIDLNYM(1)VYM(1)FQYDSTHGK VDIVAINDPFIDLNYM(55.87)VYM(55.87)FQYDSTHGK 19 3 1.0325 2198200 0 2198200 0 0.33053 0 0 0 0 0 0 0 2198200 0 NaN NaN NaN NaN 0 NaN 0 1.6776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2198200 0 0 0 0 201 407 46 46 4750 5389 15231 16000 15231 16000 20190902_JH_WT_Ubi_2 16176 15231 16000 20190902_JH_WT_Ubi_2 16176 15231 16000 20190902_JH_WT_Ubi_2 16176 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 175;133 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 51.2344 3.10906E-46 185.3 160.41 51.234 1 93.5507 0.000743335 93.551 1 51.2344 0.000418153 72.927 1 51.029 0.00652429 51.029 1 139.043 1.33225E-16 139.04 1 54.0467 0.00455208 57.432 1 59.5469 7.05173E-23 147.75 1 46.5688 2.79243E-06 95.122 1 59.469 3.10906E-46 185.3 1 M LAKVIHDNFGIVEGLMTTVHAITATQKTVDG X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Deamidation (NQ);GlyGly (K);X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP VIHDNFGIVEGLM(1)TTVHAITATQKTVDGPSGK VIHDNFGIVEGLM(51.23)TTVHAITATQKTVDGPSGK 13 4 -1.983 6550800000 6550800000 0 0 1.6519 0 1114300000 2048800000 62626000 135380000 1130000000 310830000 749370000 1071700 0 0.50302 1.7378 NaN 61.555 10.903 4.7277 11.665 0.0042893 0 0 0 1114300000 0 0 2048800000 0 0 62626000 0 0 135380000 0 0 1130000000 0 0 310830000 0 0 749370000 0 0 1071700 0 0 202 407 175 175 4856;4857 5511;5512;5514 15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15603 16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16398 15603 16398 20190821_JH_WT_Ubi 11703 15598 16393 20190902_JH_WT_Ubi_3 13453 15598 16393 20190902_JH_WT_Ubi_3 13453 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 328;286 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 63.6941 0.0245014 63.694 31.476 63.694 1 63.6941 0.0245014 63.694 1 61.8154 0.0271292 61.815 2 M WYDNEFGYSNRVVDLMAHMASKE________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX VVDLM(1)AHM(1)ASK VVDLM(63.69)AHM(63.69)ASK 5 3 -0.82413 83678000 0 83678000 0 1.3491 0 0 51673000 0 0 32005000 0 0 0 NaN 0 2.9551 NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 51673000 0 0 0 0 0 0 0 0 32005000 0 0 0 0 0 0 0 0 0 0 203 407 328 328 5049 5734;5736 16293;16294 17124;17125 16294 17125 20190821_JH_WT_Ubi 3724 16294 17125 20190821_JH_WT_Ubi 3724 16294 17125 20190821_JH_WT_Ubi 3724 sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN 331;289 sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH PE=1 SV=3;sp|P04406-2|G3P_HUMAN Isoform 2 of Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens OX=9606 GN=GAPDH 1 63.6941 0.0230428 67.153 33.409 63.694 0.986661 18.6903 0.0333226 59.418 1 63.6941 0.0230428 67.153 1 61.8154 0.0271292 61.815 0.801022 6.04839 0.0283897 62.408 0.791744 5.79988 0.0230428 67.153 0.791744 5.79988 0.0230428 67.153 1;2 M NEFGYSNRVVDLMAHMASKE___________ X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX VVDLM(1)AHM(1)ASK VVDLM(63.69)AHM(63.69)ASK 8 3 -0.82413 171320000 87640000 83678000 0 2.7621 0 2597500 69889000 0 0 32005000 5536100 33369000 27921000 NaN 0.86705 3.9968 NaN NaN NaN NaN 1.3437 1.6709 0 0 0 2597500 0 0 18216000 51673000 0 0 0 0 0 0 0 0 32005000 0 5536100 0 0 33369000 0 0 27921000 0 0 204 407 331 331 5049 5734;5736 16284;16285;16286;16287;16288;16293;16294 17115;17116;17117;17118;17119;17124;17125 16294 17125 20190821_JH_WT_Ubi 3724 16288 17119 20190902_JH_WT_Ubi_3 6312 16288 17119 20190902_JH_WT_Ubi_3 6312 sp|P04632|CPNS1_HUMAN 59 sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN Calpain small subunit 1 OS=Homo sapiens OX=9606 GN=CAPNS1 PE=1 SV=1 1 104.025 5.52477E-61 150.89 123.35 104.02 1 83.2883 5.87683E-15 83.288 1 80.6379 9.81168E-15 80.638 1 150.893 5.52477E-61 150.89 1 140.662 1.78276E-50 140.66 1 102.598 1.04366E-24 102.6 1 126.189 2.72029E-41 126.19 1 72.539 9.98244E-19 88.094 1 83.5809 5.44242E-15 83.581 1 104.025 1.64356E-32 114.71 1 M GGGGGGGGGGGGGTAMRILGGVISAISEAAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAM(1)R GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAM(104.02)R 50 3 -0.53997 568430000 568430000 0 0 10.329 200590000 42103000 51533000 37240000 97506000 38303000 28891000 13501000 30948000 NaN 1.8764 4.2101 34.469 28.505 5.9176 4.6121 NaN 9.9394 200590000 0 0 42103000 0 0 51533000 0 0 37240000 0 0 97506000 0 0 38303000 0 0 28891000 0 0 13501000 0 0 30948000 0 0 205 410 59 59 1481 1688 4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731 4960;4961;4962;4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973 4731 4973 20190902_JH_WT_Ubi_3 14305 4728 4969 20190821_JH_WT_Ubi 13526 4728 4969 20190821_JH_WT_Ubi 13526 sp|P04632|CPNS1_HUMAN 113 sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN Calpain small subunit 1 OS=Homo sapiens OX=9606 GN=CAPNS1 PE=1 SV=1 1 63.7264 0.00681207 63.726 28.337 63.726 1 49.2502 0.0123148 49.25 1 50.1889 0.0218607 50.189 1 63.7264 0.00681207 63.726 2 M VRQFRRLFAQLAGDDMEVSATELMNILNKVV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPXX LFAQLAGDDM(1)EVSATELM(1)NILNK LFAQLAGDDM(63.73)EVSATELM(63.73)NILNK 10 3 -0.44809 2460100 0 2460100 0 NaN 535930 0 0 0 0 0 758630 0 1165600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 535930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 758630 0 0 0 0 0 1165600 0 206 410 113 113 2584 2936 8384;8385;8386 8815;8816;8817 8386 8817 20190902_JH_WT_Ubi_3 14969 8386 8817 20190902_JH_WT_Ubi_3 14969 8386 8817 20190902_JH_WT_Ubi_3 14969 sp|P04632|CPNS1_HUMAN 121 sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN sp|P04632|CPNS1_HUMAN Calpain small subunit 1 OS=Homo sapiens OX=9606 GN=CAPNS1 PE=1 SV=1 1 63.7264 0.00681207 63.726 28.337 63.726 1 49.2502 0.0123148 49.25 1 50.1889 0.0218607 50.189 1 63.7264 0.00681207 63.726 2 M AQLAGDDMEVSATELMNILNKVVTRHPDLKT X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX LFAQLAGDDM(1)EVSATELM(1)NILNK LFAQLAGDDM(63.73)EVSATELM(63.73)NILNK 18 3 -0.44809 2460100 0 2460100 0 NaN 535930 0 0 0 0 0 758630 0 1165600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 535930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 758630 0 0 0 0 0 1165600 0 207 410 121 121 2584 2936 8384;8385;8386 8815;8816;8817 8386 8817 20190902_JH_WT_Ubi_3 14969 8386 8817 20190902_JH_WT_Ubi_3 14969 8386 8817 20190902_JH_WT_Ubi_3 14969 sp|P04792|HSPB1_HUMAN 169 sp|P04792|HSPB1_HUMAN sp|P04792|HSPB1_HUMAN sp|P04792|HSPB1_HUMAN Heat shock protein beta-1 OS=Homo sapiens OX=9606 GN=HSPB1 PE=1 SV=2 1 74.3922 5.11544E-05 74.392 49.995 74.392 1 49.088 0.00393899 49.088 1 74.3922 5.11544E-05 74.392 1 M SSSLSPEGTLTVEAPMPKLATQSNEITIPVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX YTLPPGVDPTQVSSSLSPEGTLTVEAPM(1)PK YTLPPGVDPTQVSSSLSPEGTLTVEAPM(74.39)PK 28 3 -0.80746 5988700 5988700 0 0 2.5054 0 0 0 0 0 0 0 1999200 3989500 NaN NaN 0 NaN NaN NaN NaN 2.4714 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1999200 0 0 3989500 0 0 208 412 169 169 5209 5929 16810;16811 17670;17671 16811 17671 20190902_JH_WT_Ubi_3 14280 16811 17671 20190902_JH_WT_Ubi_3 14280 16811 17671 20190902_JH_WT_Ubi_3 14280 sp|P04843|RPN1_HUMAN 230 sp|P04843|RPN1_HUMAN sp|P04843|RPN1_HUMAN sp|P04843|RPN1_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens OX=9606 GN=RPN1 PE=1 SV=1 1 110.843 3.22295E-05 110.84 73.189 110.84 1 44.0999 0.0360954 44.1 1 69.0694 0.0057629 69.069 1 110.843 3.22295E-05 110.84 1 M KVHYENNSPFLTITSMTRVIEVSHWGNIAVE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX VHYENNSPFLTITSM(1)TR VHYENNSPFLTITSM(110.84)TR 15 3 0.99964 6778000 6778000 0 0 NaN 0 0 2390400 0 0 0 0 1925900 2461700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2390400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1925900 0 0 2461700 0 0 209 413 230 230 4852 5506 15554;15555;15556 16337;16338;16339 15556 16339 20190902_JH_WT_Ubi_3 9934 15556 16339 20190902_JH_WT_Ubi_3 9934 15556 16339 20190902_JH_WT_Ubi_3 9934 sp|P04920-2|B3A2_HUMAN;sp|P04920-3|B3A2_HUMAN;sp|P04920|B3A2_HUMAN 649;654;663 sp|P04920-2|B3A2_HUMAN sp|P04920-2|B3A2_HUMAN sp|P04920-2|B3A2_HUMAN Isoform B1 of Anion exchange protein 2 OS=Homo sapiens OX=9606 GN=SLC4A2;sp|P04920-3|B3A2_HUMAN Isoform 3 of Anion exchange protein 2 OS=Homo sapiens OX=9606 GN=SLC4A2;sp|P04920|B3A2_HUMAN Anion exchange protein 2 OS=Homo sapiens OX= 1 67.5633 0.00213858 67.563 33.896 67.563 1 67.5633 0.00213858 67.563 1 M AGLEPKSAQDKALLQMVEAAGAAEDDPLRRT X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPXX SAQDKALLQM(1)VEAAGAAEDDPLR SAQDKALLQM(67.56)VEAAGAAEDDPLR 10 3 3.7092 1263100 1263100 0 0 1.0157 0 1263100 0 0 0 0 0 0 0 NaN 1.0157 NaN NaN NaN NaN NaN NaN NaN 0 0 0 1263100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 210 417 649 649 3831 4351 12127 12717;12718 12127 12717 20190821_JH_MUT_Ubi 10202 12127 12717 20190821_JH_MUT_Ubi 10202 12127 12717 20190821_JH_MUT_Ubi 10202 sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN 673;673;642 sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN Isoform 4 of Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1;sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1;sp|P05023-3|A 1 57.7082 4.05232E-07 107.51 76.851 57.708 1 80.4588 0.000224607 80.459 1 107.51 4.05232E-07 107.51 1 70.1139 0.00110251 70.114 1 71.0007 0.00171194 71.001 1 57.7082 0.0115777 57.708 1 M RDAKACVVHGSDLKDMTSEQLDDILKYHTEI X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPP DM(1)TSEQLDDILKYHTEIVFAR DM(57.71)TSEQLDDILKYHTEIVFAR 2 4 2.24 13810000 13810000 0 0 1.1513 0 2220400 3170100 0 0 0 0 0 1721200 0 0.51361 NaN NaN NaN 0 0 NaN NaN 0 0 0 2220400 0 0 3170100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1721200 0 0 211 418 673 673 48;626 55;718 160;161;1962;1963;1964 175;176;177;2081;2082;2083 1964 2083 20190902_JH_WT_Ubi_3 13490 1963 2082 20190821_JH_WT_Ubi 12518 1963 2082 20190821_JH_WT_Ubi 12518 sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|Q13733|AT1A4_HUMAN 158;158;127;158;148;159;161;166 sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN Isoform 4 of Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1;sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1;sp|P05023-3|A 1 81.4475 0.000252797 97.2 37.939 81.448 1 54.5979 0.0231 54.598 1 88.7681 0.000521752 88.768 1 97.2005 0.000252797 97.2 1 71.08 0.0031195 71.08 1 81.4475 0.00108947 81.448 2 M TGCFSYYQEAKSSKIMESFKNMVPQQALVIR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP IM(1)ESFKNM(1)VPQQALVIR IM(81.45)ESFKNM(81.45)VPQQALVIR 2 3 -0.17148 13221000 0 13221000 0 NaN 0 0 0 887290 0 3423900 3702300 2495200 2711900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 887290 0 0 0 0 0 3423900 0 0 3702300 0 0 2495200 0 0 2711900 0 212 418 158 158 2208 2516 7280;7281;7282;7283;7284 7658;7659;7660;7661;7662 7284 7662 20190902_JH_WT_Ubi_3 9943 7282 7660 20190902_JH_MUT_Ubi_3 8754 7282 7660 20190902_JH_MUT_Ubi_3 8754 sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|Q13733|AT1A4_HUMAN 164;164;133;164;154;165;167;172 sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN Isoform 4 of Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1;sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1;sp|P05023-3|A 1 81.4475 0.000252797 97.2 37.939 81.448 1 54.5979 0.0231 54.598 1 88.7681 0.000521752 88.768 1 97.2005 0.000252797 97.2 1 71.08 0.0031195 71.08 1 81.4475 0.00108947 81.448 2 M YQEAKSSKIMESFKNMVPQQALVIRNGEKMS X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X XXXXXXXXPPPPPPPPPPPPPPPPPXXXXXX IM(1)ESFKNM(1)VPQQALVIR IM(81.45)ESFKNM(81.45)VPQQALVIR 8 3 -0.17148 13221000 0 13221000 0 NaN 0 0 0 887290 0 3423900 3702300 2495200 2711900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 887290 0 0 0 0 0 3423900 0 0 3702300 0 0 2495200 0 0 2711900 0 213 418 164 164 2208 2516 7280;7281;7282;7283;7284 7658;7659;7660;7661;7662 7284 7662 20190902_JH_WT_Ubi_3 9943 7282 7660 20190902_JH_MUT_Ubi_3 8754 7282 7660 20190902_JH_MUT_Ubi_3 8754 sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN 178;178;147;178 sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN Isoform 4 of Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1;sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1;sp|P05023-3|A 1 66.6437 0.0129333 66.644 21.387 66.644 1 59.9754 0.0322211 59.975 1 66.6437 0.0129333 66.644 1 M NMVPQQALVIRNGEKMSINAEEVVVGDLVEV X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP NGEKM(1)SINAEEVVVGDLVEVK NGEKM(66.64)SINAEEVVVGDLVEVK 5 3 -0.25824 2696500 2696500 0 0 NaN 0 0 0 0 0 1532000 1164500 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1532000 0 0 1164500 0 0 0 0 0 0 0 0 214 418 178 178 3064 3502 9882;9883 10413;10414 9883 10414 20190902_JH_MUT_Ubi_3 12195 9883 10414 20190902_JH_MUT_Ubi_3 12195 9883 10414 20190902_JH_MUT_Ubi_3 12195 sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN 507;507;476;507 sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN sp|P05023-4|AT1A1_HUMAN Isoform 4 of Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1;sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1;sp|P05023-3|A 1 40.7592 0.028187 40.759 16.532 40.759 1 40.7592 0.028187 40.759 1 M IHKNPNTSEPQHLLVMKGAPERILDRCSSIL X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YQLSIHKNPNTSEPQHLLVM(1)K YQLSIHKNPNTSEPQHLLVM(40.76)K 20 4 -0.66736 1198200 1198200 0 0 NaN 0 1198200 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1198200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215 418 507 507 5194 5912 16768 17627 16768 17627 20190821_JH_MUT_Ubi 5524 16768 17627 20190821_JH_MUT_Ubi 5524 16768 17627 20190821_JH_MUT_Ubi 5524 sp|P05067-10|A4_HUMAN;sp|P05067-3|A4_HUMAN;sp|P05067-4|A4_HUMAN;sp|P05067-5|A4_HUMAN;sp|P05067-6|A4_HUMAN;sp|P05067-7|A4_HUMAN;sp|P05067-11|A4_HUMAN;sp|P05067-8|A4_HUMAN;sp|P05067-9|A4_HUMAN;sp|P05067|A4_HUMAN 621;659;677;678;696;715;728;733;734;752 sp|P05067-10|A4_HUMAN sp|P05067-10|A4_HUMAN sp|P05067-10|A4_HUMAN Isoform APP639 of Amyloid-beta A4 protein OS=Homo sapiens OX=9606 GN=APP;sp|P05067-3|A4_HUMAN Isoform L-APP677 of Amyloid-beta A4 protein OS=Homo sapiens OX=9606 GN=APP;sp|P05067-4|A4_HUMAN Isoform APP695 of Amyloid-beta A4 protein OS 1 97.1294 0.00109827 106.3 73.611 97.129 1 106.3 0.00109827 106.3 1 71.0308 0.0326196 71.031 1 91.789 0.00695355 91.789 1 98.6762 0.00257283 98.676 1 78.0691 0.0156756 78.069 1 97.1294 0.00317274 97.129 1 M EVDAAVTPEERHLSKMQQNGYENPTYKFFEQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPXXXX HLSKM(1)QQNGYENPTYK HLSKM(97.13)QQNGYENPTYK 5 3 0.48866 12511000 12511000 0 0 NaN 2911300 1468000 0 400240 0 0 385440 4075100 3271000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2911300 0 0 1468000 0 0 0 0 0 400240 0 0 0 0 0 0 0 0 385440 0 0 4075100 0 0 3271000 0 0 216 420 621 621 1932 2197 6272;6273;6274;6275;6276;6277 6599;6600;6601;6602;6603;6604;6605 6277 6605 20190902_JH_WT_Ubi_3 5120 6272 6599 20190821_JH_EV_Ubi 3533 6272 6599 20190821_JH_EV_Ubi 3533 sp|P10696|PPBN_HUMAN;sp|P05187|PPB1_HUMAN 63;66 sp|P10696|PPBN_HUMAN sp|P10696|PPBN_HUMAN sp|P10696|PPBN_HUMAN Alkaline phosphatase, placental-like OS=Homo sapiens OX=9606 GN=ALPPL2 PE=2 SV=4;sp|P05187|PPB1_HUMAN Alkaline phosphatase, placental type OS=Homo sapiens OX=9606 GN=ALPP PE=1 SV=2 1 60.9505 0.000477365 60.95 38.827 60.95 1 60.9505 0.000477365 60.95 1 M AQTAAKNLIIFLGDGMGVSTVTAARILKGQK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX KLQPAQTAAKNLIIFLGDGM(1)GVSTVTAAR KLQPAQTAAKNLIIFLGDGM(60.95)GVSTVTAAR 20 4 0.4751 1538000 1538000 0 0 NaN 1538000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1538000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 217 424 63 63 2392 2720 7843 8246 7843 8246 20190821_JH_EV_Ubi 11770 7843 8246 20190821_JH_EV_Ubi 11770 7843 8246 20190821_JH_EV_Ubi 11770 sp|P05556|ITB1_HUMAN 771 sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1 PE=1 SV=2 1 46.5688 1.69568E-10 122.16 94.253 46.569 1 122.157 1.69568E-10 122.16 1 59.6184 0.00347283 59.618 1 65.0384 0.0198941 65.038 1 68.0334 0.00797304 68.033 1 46.5688 0.0205181 46.569 1 M IIHDRREFAKFEKEKMNAKWDTGENPIYKSA X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP M(1)NAKWDTGENPIYKSAVTTVVNPK M(46.57)NAKWDTGENPIYKSAVTTVVNPK 1 4 -1.2874 13539000 13539000 0 0 NaN 4460600 1673700 0 0 0 2958100 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 4460600 0 0 1673700 0 0 0 0 0 0 0 0 0 0 0 2958100 0 0 0 0 0 0 0 0 0 0 0 218 429 771 771 966;2949 1092;3354 3090;3091;9495;9496;9497 3246;3247;9995;9996;9997 9497 9997 20190902_JH_MUT_Ubi_2 9448 9495 9995 20190821_JH_EV_Ubi 8746 9495 9995 20190821_JH_EV_Ubi 8746 sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN 632;632;632;632;632 sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1 PE=1 SV=2;sp|P05556-2|ITB1_HUMAN Isoform 2 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05556-5|ITB1_HUMAN Isoform 5 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05 1 99.3131 9.38274E-14 141.18 124.7 99.313 1 141.185 9.38274E-14 141.18 1 70.9069 0.00206334 70.907 1 99.3131 3.75339E-05 99.313 1 M VCKCTDPKFQGQTCEMCQTCLGVCAEHKECV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX FQGQTCEM(1)CQTCLGVCAEHK FQGQTCEM(99.31)CQTCLGVCAEHK 8 3 -0.19919 10595000 10595000 0 0 3.4332 0 0 2752900 0 0 0 0 4676400 3165900 NaN NaN 0.89205 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2752900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4676400 0 0 3165900 0 0 219 429 632 632 1283 1453 4057;4058;4059 4266;4267;4268;4269 4059 4269 20190902_JH_WT_Ubi_3 7051 4057 4267 20190821_JH_WT_Ubi 5402 4057 4267 20190821_JH_WT_Ubi 5402 sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN 512;512;512;512;512 sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1 PE=1 SV=2;sp|P05556-2|ITB1_HUMAN Isoform 2 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05556-5|ITB1_HUMAN Isoform 5 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05 1 129.427 9.61395E-31 178.22 158.4 129.43 1 178.064 9.91757E-31 178.06 1 84.035 0.000491974 84.035 1 129.319 4.02704E-09 129.32 1 178.216 9.61395E-31 178.22 1 129.427 3.95249E-09 129.43 1 M GRHCECSTDEVNSEDMDAYCRKENSSEICSN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPXXXXXXXXXX HCECSTDEVNSEDM(1)DAYCR HCECSTDEVNSEDM(129.43)DAYCR 14 3 0.15284 33886000 33886000 0 0 2.9206 0 0 4972500 1799900 1583700 0 0 13053000 12477000 NaN NaN 1.1519 NaN NaN NaN NaN 3.2494 3.8169 0 0 0 0 0 0 4972500 0 0 1799900 0 0 1583700 0 0 0 0 0 0 0 0 13053000 0 0 12477000 0 0 220 429 512 512 1793 2035 5704;5705;5706;5707;5708 6006;6007;6008;6009;6010;6011 5708 6011 20190902_JH_WT_Ubi_3 6078 5707 6010 20190902_JH_WT_Ubi_2 6200 5707 6010 20190902_JH_WT_Ubi_2 6200 sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN 256;256;256;256;256 sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN sp|P05556|ITB1_HUMAN Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1 PE=1 SV=2;sp|P05556-2|ITB1_HUMAN Isoform 2 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05556-5|ITB1_HUMAN Isoform 5 of Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1;sp|P05 1 86.9965 2.08711E-06 86.997 45.307 86.997 1 45.6112 0.010105 45.611 1 86.9965 2.08711E-06 86.997 1 M ISGNLDSPEGGFDAIMQVAVCGSLIGWRNVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX ISGNLDSPEGGFDAIM(1)QVAVCGSLIGWR ISGNLDSPEGGFDAIM(87)QVAVCGSLIGWR 16 3 0.080654 5846600 5846600 0 0 NaN 0 1366500 4480100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1366500 0 0 4480100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221 429 256 256 2257 2568 7400;7401 7779;7780 7401 7780 20190821_JH_WT_Ubi 15618 7401 7780 20190821_JH_WT_Ubi 15618 7401 7780 20190821_JH_WT_Ubi 15618 sp|P05783|K1C18_HUMAN 58 sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo sapiens OX=9606 GN=KRT18 PE=1 SV=2 1 240.415 2.11828E-121 247.64 168.31 240.42 1 193.38 5.43988E-54 193.38 1 153.145 1.8806E-26 153.14 1 200.138 6.04718E-64 200.14 1 247.636 2.11828E-121 247.64 1 206.951 3.11375E-66 206.95 1 195.134 1.04658E-63 195.13 1 240.415 2.44559E-105 240.42 1 240.415 2.44559E-105 240.42 2 M GSRISVSRSTSFRGGMGSGGLATGIAGGLAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GGM(1)GSGGLATGIAGGLAGM(1)GGIQNEK GGM(240.42)GSGGLATGIAGGLAGM(240.42)GGIQNEK 3 3 0.29459 117180000 0 117180000 0 NaN 17842000 0 16137000 17497000 15117000 9495000 7956300 22462000 10676000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 17842000 0 0 0 0 0 16137000 0 0 17497000 0 0 15117000 0 0 9495000 0 0 7956300 0 0 22462000 0 0 10676000 0 222 430 58 58 1492 1702;1703 4769;4770;4771;4772;4773;4774;4775;4776 5014;5015;5016;5017;5018;5019;5020;5021;5022 4776 5022 20190902_JH_WT_Ubi_3 10556 4771 5016 20190902_JH_EV_Ubi_3 9212 4771 5016 20190902_JH_EV_Ubi_3 9212 sp|P05783|K1C18_HUMAN 74 sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo sapiens OX=9606 GN=KRT18 PE=1 SV=2 1 240.415 2.11828E-121 247.64 168.31 240.42 1 193.38 5.43988E-54 193.38 1 153.145 1.8806E-26 153.14 1 200.138 6.04718E-64 200.14 1 247.636 2.11828E-121 247.64 1 206.951 3.11375E-66 206.95 1 195.134 1.04658E-63 195.13 1 240.415 2.44559E-105 240.42 1 240.415 2.44559E-105 240.42 1;2 M GSGGLATGIAGGLAGMGGIQNEKETMQSLND X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX GGM(1)GSGGLATGIAGGLAGM(1)GGIQNEK GGM(240.42)GSGGLATGIAGGLAGM(240.42)GGIQNEK 19 3 0.29459 122300000 5120500 117180000 0 NaN 19744000 0 19355000 17497000 15117000 9495000 7956300 22462000 10676000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1902700 17842000 0 0 0 0 3217800 16137000 0 0 17497000 0 0 15117000 0 0 9495000 0 0 7956300 0 0 22462000 0 0 10676000 0 223 430 74 74 1492 1702;1703 4769;4770;4771;4772;4773;4774;4775;4776;4777;4778 5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024 4776 5022 20190902_JH_WT_Ubi_3 10556 4771 5016 20190902_JH_EV_Ubi_3 9212 4771 5016 20190902_JH_EV_Ubi_3 9212 sp|P05783|K1C18_HUMAN 402 sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo sapiens OX=9606 GN=KRT18 PE=1 SV=2 1 136.607 7.92266E-105 238.05 198.52 136.61 1 159.533 7.63901E-34 159.53 1 48.8404 0.00708466 48.84 1 160.976 6.68293E-34 160.98 1 136.607 2.47298E-25 136.61 1 238.048 7.92266E-105 238.05 1 169.187 1.24333E-34 169.19 1 M GEDFNLGDALDSSNSMQTIQKTTTRRIVDGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX LLEDGEDFNLGDALDSSNSM(1)QTIQKTTTR LLEDGEDFNLGDALDSSNSM(136.61)QTIQKTTTR 20 3 0.18476 29087000 29087000 0 0 19.844 1676100 0 8971100 0 0 0 0 8236600 6639400 NaN NaN NaN NaN NaN 0 NaN NaN NaN 1676100 0 0 0 0 0 8971100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8236600 0 0 6639400 0 0 224 430 402 402 2682;2683 3050;3051 8722;8723;8724;8725;8726;8727 9171;9172;9173;9174;9175;9176 8727 9176 20190902_JH_MUT_Ubi_3 10993 8724 9173 20190902_JH_WT_Ubi_2 14042 8724 9173 20190902_JH_WT_Ubi_2 14042 sp|P05783|K1C18_HUMAN 335 sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo sapiens OX=9606 GN=KRT18 PE=1 SV=2 1 86.8321 2.51982E-45 184.62 113.7 86.832 1 52.7196 0.0210798 52.72 1 86.8321 1.78681E-05 86.832 1 62.1669 0.00512375 62.167 1 184.617 2.51982E-45 184.62 1 117.346 1.31327E-08 117.35 1 81.0171 0.000408589 81.017 1 157.012 1.76338E-22 157.01 1 M LENSLREVEARYALQMEQLNGILLHLESELA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP YALQM(1)EQLNGILLHLESELAQTR YALQM(86.83)EQLNGILLHLESELAQTR 5 3 -0.064167 32943000 32943000 0 0 4.6625 2754400 0 10873000 0 0 2962700 1454800 9129200 4229200 NaN 0 2.9749 NaN NaN NaN NaN NaN NaN 2754400 0 0 0 0 0 10873000 0 0 0 0 0 0 0 0 2962700 0 0 1454800 0 0 9129200 0 0 4229200 0 0 225 430 335 335 5101 5797;5798 16449;16450;16451;16452;16453;16454;16455 17286;17287;17288;17289;17290;17291;17292 16455 17292 20190821_JH_MUT_Ubi 14264 16450 17287 20190902_JH_MUT_Ubi_2 14837 16450 17287 20190902_JH_MUT_Ubi_2 14837 sp|P06576|ATPB_HUMAN 250 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 79.3473 0.00118576 79.347 46.43 79.347 1 79.3473 0.00118576 79.347 1 M GVGERTREGNDLYHEMIESGVINLKDATSKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX EGNDLYHEM(1)IESGVINLK EGNDLYHEM(79.35)IESGVINLK 9 3 -1.0585 6447000 6447000 0 0 NaN 0 0 0 0 0 0 0 0 6447000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6447000 0 0 226 433 250 250 903 1021 2862 3012 2862 3012 20190902_JH_WT_Ubi_3 10794 2862 3012 20190902_JH_WT_Ubi_3 10794 2862 3012 20190902_JH_WT_Ubi_3 10794 sp|P06576|ATPB_HUMAN 478 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 72.4463 5.83965E-11 137.91 89.517 72.446 1 112.915 7.07703E-06 112.91 1 116.04 4.92807E-06 116.04 1 101.076 0.000114989 101.08 1 90.2589 5.83965E-11 137.91 1 55.7818 2.47756E-08 124.46 1 70.1665 0.00685598 70.167 1 73.2522 0.00245499 73.252 1 66.5682 0.00525717 66.826 1 72.4463 1.84385E-08 127.2 1 M FLSQPFQVAEVFTGHMGKLVPLKETIKGFQQ X;X;X;Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX FLSQPFQVAEVFTGHM(1)GK FLSQPFQVAEVFTGHM(72.45)GK 16 3 0.74633 207560000 207560000 0 0 2.8881 37431000 14398000 55256000 13428000 13654000 0 5712300 33141000 19934000 2.9476 1.8591 1.684 5.9034 NaN 0 1.5274 4.0279 NaN 37431000 0 0 14398000 0 0 55256000 0 0 13428000 0 0 13654000 0 0 0 0 0 5712300 0 0 33141000 0 0 19934000 0 0 227 433 478 478 1256 1419;1421 3973;3974;3975;3976;3977;3978;3979;3980;3988;3989;3990;3991;3992 4178;4179;4180;4181;4182;4183;4184;4185;4186;4187;4188;4196;4197;4198;4199;4200 3992 4200 20190902_JH_WT_Ubi_3 13320 3974 4180 20190902_JH_EV_Ubi_2 11209 3974 4180 20190902_JH_EV_Ubi_2 11209 sp|P06576|ATPB_HUMAN 509 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 92.2253 2.25242E-07 92.225 69.576 92.225 1 66.7381 0.000196542 66.738 1 92.2253 2.25242E-07 92.225 1 M ILAGEYDHLPEQAFYMVGPIEEAVAKADKLA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX GFQQILAGEYDHLPEQAFYM(1)VGPIEEAVAK GFQQILAGEYDHLPEQAFYM(92.23)VGPIEEAVAK 20 3 -0.93101 4965800 4965800 0 0 NaN 0 0 2064400 0 0 0 0 2901400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2064400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2901400 0 0 0 0 0 228 433 509 509 1465 1668 4663;4664 4898;4899 4664 4899 20190902_JH_WT_Ubi_2 15610 4664 4899 20190902_JH_WT_Ubi_2 15610 4664 4899 20190902_JH_WT_Ubi_2 15610 sp|P06576|ATPB_HUMAN 408 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 58.817 0.0096084 65.467 24.066 58.817 1 65.467 0.0096084 65.467 1 58.817 0.016368 58.817 1 M GIYPAVDPLDSTSRIMDPNIVGSEHYDVARG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX IM(1)DPNIVGSEHYDVAR IM(58.82)DPNIVGSEHYDVAR 2 3 0.075506 7603200 7603200 0 0 NaN 0 0 3427700 0 0 0 0 0 4175600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3427700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4175600 0 0 229 433 408 408 2207 2515 7278;7279 7656;7657 7279 7657 20190902_JH_WT_Ubi_3 8466 7278 7656 20190821_JH_WT_Ubi 6744 7278 7656 20190821_JH_WT_Ubi 6744 sp|P06576|ATPB_HUMAN 339 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 117.232 1.38574E-08 117.23 75.163 117.23 1 85.3974 8.09273E-05 85.397 1 117.232 1.38574E-08 117.23 2 M RIPSAVGYQPTLATDMGTMQERITTTKKGSI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX IPSAVGYQPTLATDM(1)GTM(1)QER IPSAVGYQPTLATDM(117.23)GTM(117.23)QER 15 3 -0.15673 11454000 0 11454000 0 NaN 0 0 0 0 0 0 0 6449700 5004500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6449700 0 0 5004500 0 230 433 339 339 2232 2542 7342;7343 7721;7722 7343 7722 20190902_JH_WT_Ubi_3 10171 7343 7722 20190902_JH_WT_Ubi_3 10171 7343 7722 20190902_JH_WT_Ubi_3 10171 sp|P06576|ATPB_HUMAN 342 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 117.232 1.38574E-08 117.23 75.163 117.23 1 85.3974 8.09273E-05 85.397 1 117.232 1.38574E-08 117.23 2 M SAVGYQPTLATDMGTMQERITTTKKGSITSV X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX IPSAVGYQPTLATDM(1)GTM(1)QER IPSAVGYQPTLATDM(117.23)GTM(117.23)QER 18 3 -0.15673 11454000 0 11454000 0 NaN 0 0 0 0 0 0 0 6449700 5004500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6449700 0 0 5004500 0 231 433 342 342 2232 2542 7342;7343 7721;7722 7343 7722 20190902_JH_WT_Ubi_3 10171 7343 7722 20190902_JH_WT_Ubi_3 10171 7343 7722 20190902_JH_WT_Ubi_3 10171 sp|P06576|ATPB_HUMAN 443 sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1B PE=1 SV=3 1 110.64 7.28469E-06 110.64 66.039 110.64 1 93.9201 0.000156325 93.92 1 95.365 0.000134649 95.365 1 99.0922 7.87377E-05 99.092 1 110.444 0.000255092 110.44 1 92.5631 0.000176681 92.563 1 110.64 7.28469E-06 110.64 1 M LQDYKSLQDIIAILGMDELSEEDKLTVSRAR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX SLQDIIAILGM(1)DELSEEDK SLQDIIAILGM(110.64)DELSEEDK 11 3 -0.28792 8643700 8643700 0 0 NaN 664000 0 4147600 0 0 342920 0 1757900 1731300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 664000 0 0 0 0 0 4147600 0 0 0 0 0 0 0 0 342920 0 0 0 0 0 1757900 0 0 1731300 0 0 232 433 443 443 4040 4588 12795;12796;12797;12798;12799;12800 13419;13420;13421;13422;13423;13424 12800 13424 20190902_JH_WT_Ubi_3 15916 12800 13424 20190902_JH_WT_Ubi_3 15916 12800 13424 20190902_JH_WT_Ubi_3 15916 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 65;65;65 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 165.66 1.379E-23 165.66 94.518 165.66 1 150.909 5.95936E-18 150.91 1 152.317 4.93324E-18 152.32 1 119.076 1.34215E-06 119.08 1 137.727 3.06988E-13 137.73 1 142.35 1.55845E-13 142.35 1 102.689 5.56955E-05 102.69 1 148.361 7.81497E-18 148.36 1 165.66 1.379E-23 165.66 1 M GAGAKDELHIVEAEAMNYEGSPIKVTLATLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX DELHIVEAEAM(1)NYEGSPIK DELHIVEAEAM(165.66)NYEGSPIK 11 3 0.54048 48242000 48242000 0 0 1.287 2987800 0 12632000 1917900 2920600 1679100 1054700 13067000 11983000 1.243 NaN 0.53562 NaN NaN NaN NaN 1.6774 3.2329 2987800 0 0 0 0 0 12632000 0 0 1917900 0 0 2920600 0 0 1679100 0 0 1054700 0 0 13067000 0 0 11983000 0 0 233 438 65 65 437 511 1397;1398;1399;1400;1401;1402;1403;1404 1488;1489;1490;1491;1492;1493;1494;1495 1404 1495 20190902_JH_WT_Ubi_3 12156 1404 1495 20190902_JH_WT_Ubi_3 12156 1404 1495 20190902_JH_WT_Ubi_3 12156 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 1;1;1 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 91.6396 4.84611E-05 91.64 63.246 91.64 1 83.4231 0.00186011 83.423 1 77.6682 0.0045472 77.668 1 91.6396 4.84611E-05 91.64 4 M _______________MEDSMDMDMSPLRPQN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EDSM(1)DM(1)DM(1)SPLRPQNYLFGCELK M(91.64)EDSM(91.64)DM(91.64)DM(91.64)SPLRPQNYLFGCELK 1 3 0.55239 6357000 0 0 6357000 NaN 0 0 1855500 0 0 0 0 2755200 1746300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1855500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2755200 0 0 1746300 234 438 1 1 2893 3285 9326;9327;9328 9819;9820;9821 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 5;5;5 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 91.6396 4.84611E-05 91.64 63.246 91.64 1 83.4231 0.00186011 83.423 1 77.6682 0.0045472 77.668 1 91.6396 4.84611E-05 91.64 4 M ___________MEDSMDMDMSPLRPQNYLFG X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP M(1)EDSM(1)DM(1)DM(1)SPLRPQNYLFGCELK M(91.64)EDSM(91.64)DM(91.64)DM(91.64)SPLRPQNYLFGCELK 5 3 0.55239 6357000 0 0 6357000 NaN 0 0 1855500 0 0 0 0 2755200 1746300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1855500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2755200 0 0 1746300 235 438 5 5 2893 3285 9326;9327;9328 9819;9820;9821 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 7;7;7 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 91.6396 4.84611E-05 91.64 63.246 91.64 1 83.4231 0.00186011 83.423 1 77.6682 0.0045472 77.668 1 91.6396 4.84611E-05 91.64 4 M _________MEDSMDMDMSPLRPQNYLFGCE X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP M(1)EDSM(1)DM(1)DM(1)SPLRPQNYLFGCELK M(91.64)EDSM(91.64)DM(91.64)DM(91.64)SPLRPQNYLFGCELK 7 3 0.55239 6357000 0 0 6357000 NaN 0 0 1855500 0 0 0 0 2755200 1746300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1855500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2755200 0 0 1746300 236 438 7 7 2893 3285 9326;9327;9328 9819;9820;9821 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 9;9;9 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 91.6396 4.84611E-05 91.64 63.246 91.64 1 83.4231 0.00186011 83.423 1 77.6682 0.0045472 77.668 1 91.6396 4.84611E-05 91.64 4 M _______MEDSMDMDMSPLRPQNYLFGCELK X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP M(1)EDSM(1)DM(1)DM(1)SPLRPQNYLFGCELK M(91.64)EDSM(91.64)DM(91.64)DM(91.64)SPLRPQNYLFGCELK 9 3 0.55239 6357000 0 0 6357000 NaN 0 0 1855500 0 0 0 0 2755200 1746300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1855500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2755200 0 0 1746300 237 438 9 9 2893 3285 9326;9327;9328 9819;9820;9821 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 9328 9821 20190902_JH_WT_Ubi_3 13837 sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN 81;81;81 sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN sp|P06748-3|NPM_HUMAN Isoform 3 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748-2|NPM_HUMAN Isoform 2 of Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1;sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens OX=9606 GN=NPM1 PE=1 SV=2 1 117.232 6.63472E-169 279.91 236.52 117.23 1 146.68 6.09331E-17 146.68 1 279.905 6.63472E-169 279.91 1 45.1345 0.0260325 45.135 1 85.1664 9.65203E-05 85.166 1 128.295 2.65876E-11 128.29 1 109.37 2.6384E-07 109.37 1 117.232 1.50002E-08 117.23 1 M NYEGSPIKVTLATLKMSVQPTVSLGGFEITP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)SVQPTVSLGGFEITPPVVLR M(117.23)SVQPTVSLGGFEITPPVVLR 1 3 -0.61992 107840000 107840000 0 0 3.2104 0 16728000 18823000 285420 0 11290000 9344000 7173400 12877000 NaN 1.3661 1.8417 NaN NaN 2.533 2.9887 4.0542 7.2652 0 0 0 16728000 0 0 18823000 0 0 285420 0 0 0 0 0 11290000 0 0 9344000 0 0 7173400 0 0 12877000 0 0 238 438 81 81 2973 3391 9583;9584;9585;9586;9587;9588;9589;9590 10086;10087;10088;10089;10090;10091;10092;10093;10094 9590 10094 20190902_JH_WT_Ubi_3 15255 9588 10092 20190821_JH_WT_Ubi 14935 9588 10092 20190821_JH_WT_Ubi 14935 sp|P07099|HYEP_HUMAN 146 sp|P07099|HYEP_HUMAN sp|P07099|HYEP_HUMAN sp|P07099|HYEP_HUMAN Epoxide hydrolase 1 OS=Homo sapiens OX=9606 GN=EPHX1 PE=1 SV=1 1 145.7 6.56594E-11 145.7 106.7 145.7 1 115.037 1.67783E-05 115.04 1 145.7 6.56594E-11 145.7 1 M KPPQLPAGHTPKPLLMVHGWPGSFYEFYKII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPXX PLLM(1)VHGWPGSFYEFYK PLLM(145.7)VHGWPGSFYEFYK 4 3 0.14891 80370000 80370000 0 0 NaN 0 0 25696000 0 0 0 0 54674000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 25696000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54674000 0 0 0 0 0 239 441 146 146 3437 3921 11019;11020 11584;11585 11020 11585 20190902_JH_WT_Ubi_2 14161 11020 11585 20190902_JH_WT_Ubi_2 14161 11020 11585 20190902_JH_WT_Ubi_2 14161 sp|P07195|LDHB_HUMAN 63 sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN L-lactate dehydrogenase B chain OS=Homo sapiens OX=9606 GN=LDHB PE=1 SV=2 1 150.013 7.60269E-14 150.01 104.14 150.01 1 46.1561 0.0296655 46.156 1 88.1897 0.000751302 88.19 1 118.046 9.8075E-06 118.05 1 43.7524 0.0339673 43.752 1 50.2522 0.0223351 50.252 1 145.936 5.05844E-11 145.94 1 150.013 7.60269E-14 150.01 1;2 M ELALVDVLEDKLKGEMMDLQHGSLFLQTPKI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX GEM(1)M(1)DLQHGSLFLQTPK GEM(150.01)M(150.01)DLQHGSLFLQTPK 3 3 0.04364 84597000 13832000 70766000 0 40.551 1069700 997200 25197000 0 0 1721200 1981700 29788000 23843000 NaN NaN NaN NaN NaN NaN NaN NaN 11.429 0 1069700 0 0 997200 0 7581900 17615000 0 0 0 0 0 0 0 0 1721200 0 0 1981700 0 6249800 23538000 0 0 23843000 0 240 442 63 63 1437 1635;1636 4560;4561;4562;4563;4564;4565;4566;4567;4568 4792;4793;4794;4795;4796;4797;4798;4799;4800 4566 4798 20190902_JH_WT_Ubi_3 9598 4566 4798 20190902_JH_WT_Ubi_3 9598 4566 4798 20190902_JH_WT_Ubi_3 9598 sp|P07195|LDHB_HUMAN 64 sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN L-lactate dehydrogenase B chain OS=Homo sapiens OX=9606 GN=LDHB PE=1 SV=2 1 150.013 7.60269E-14 150.01 104.14 150.01 1 46.1561 0.0296655 46.156 1 88.1897 0.000751302 88.19 1 118.046 9.8075E-06 118.05 1 43.7524 0.0339673 43.752 1 50.2522 0.0223351 50.252 1 145.936 5.05844E-11 145.94 1 150.013 7.60269E-14 150.01 2 M LALVDVLEDKLKGEMMDLQHGSLFLQTPKIV X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPXX GEM(1)M(1)DLQHGSLFLQTPK GEM(150.01)M(150.01)DLQHGSLFLQTPK 4 3 0.04364 70766000 0 70766000 0 33.921 1069700 997200 17615000 0 0 1721200 1981700 23538000 23843000 NaN NaN NaN NaN NaN NaN NaN NaN 11.429 0 1069700 0 0 997200 0 0 17615000 0 0 0 0 0 0 0 0 1721200 0 0 1981700 0 0 23538000 0 0 23843000 0 241 442 64 64 1437 1635;1636 4560;4561;4562;4563;4564;4565;4566 4792;4793;4794;4795;4796;4797;4798 4566 4798 20190902_JH_WT_Ubi_3 9598 4566 4798 20190902_JH_WT_Ubi_3 9598 4566 4798 20190902_JH_WT_Ubi_3 9598 sp|P07195|LDHB_HUMAN 34 sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN sp|P07195|LDHB_HUMAN L-lactate dehydrogenase B chain OS=Homo sapiens OX=9606 GN=LDHB PE=1 SV=2 1 56.3465 2.8952E-60 215.51 187.79 56.347 1 85.4961 0.000228961 85.496 1 164.992 7.46325E-24 164.99 1 159.007 2.90186E-20 159.01 1 55.0072 0.0118154 55.007 1 93.2373 9.20656E-14 141.3 1 56.3465 2.8952E-60 215.51 1 152.659 2.25633E-18 152.66 1 156.08 1.05626E-18 156.08 1 M VPNNKITVVGVGQVGMACAISILGKSLADEL X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX ITVVGVGQVGM(1)ACAISILGK ITVVGVGQVGM(56.35)ACAISILGK 11 3 2.0713 87096000 87096000 0 0 0.73114 2403100 16705000 13135000 0 835170 17028000 12721000 6094300 17333000 NaN 0.21013 0.60714 NaN NaN 2.6998 1.7722 2.8079 7.4132 2403100 0 0 16705000 0 0 13135000 0 0 0 0 0 835170 0 0 17028000 0 0 12721000 0 0 6094300 0 0 17333000 0 0 242 442 34 34 2284 2599;2601 7499;7500;7501;7502;7503;7504;7505;7506;7514;7515 7886;7887;7888;7889;7890;7891;7892;7893;7901;7902 7515 7902 20190902_JH_MUT_Ubi_3 12805 7503 7890 20190902_JH_MUT_Ubi_3 12512 7503 7890 20190902_JH_MUT_Ubi_3 12512 sp|P07203|GPX1_HUMAN;sp|P07203-2|GPX1_HUMAN 59;59 sp|P07203|GPX1_HUMAN sp|P07203|GPX1_HUMAN sp|P07203|GPX1_HUMAN Glutathione peroxidase 1 OS=Homo sapiens OX=9606 GN=GPX1 PE=1 SV=4;sp|P07203-2|GPX1_HUMAN Isoform 2 of Glutathione peroxidase 1 OS=Homo sapiens OX=9606 GN=GPX1 1 66.2987 0.0257187 66.299 26.03 66.299 1 66.2987 0.0257187 66.299 M NVASLUGTTVRDYTQMNELQRRLGPRGLVVL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX DYTQM(1)NELQR DYTQM(66.3)NELQR 5 2 3.6681 2617700 2617700 0 0 NaN 0 0 0 0 0 0 0 2617700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2617700 0 0 0 0 0 243 443 59 59 777 881 2446 2576 2446 2576 20190902_JH_WT_Ubi_2 7085 2446 2576 20190902_JH_WT_Ubi_2 7085 2446 2576 20190902_JH_WT_Ubi_2 7085 sp|P07237|PDIA1_HUMAN 495 sp|P07237|PDIA1_HUMAN sp|P07237|PDIA1_HUMAN sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens OX=9606 GN=P4HB PE=1 SV=3 1 142.344 3.33017E-68 186.42 186.07 142.34 1 104.832 6.56657E-13 104.83 1 139.751 8.47592E-33 139.75 1 186.419 3.33017E-68 186.42 1 142.344 5.49194E-33 142.34 1 M DDDDLEDLEEAEEPDMEEDDDQKAVKDEL__ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX FLESGGQDGAGDDDDLEDLEEAEEPDM(1)EEDDDQK FLESGGQDGAGDDDDLEDLEEAEEPDM(142.34)EEDDDQK 27 3 0.16144 16317000 16317000 0 0 4.3898 0 0 3877100 0 674890 0 0 5327600 6437300 NaN NaN 1.0431 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3877100 0 0 0 0 0 674890 0 0 0 0 0 0 0 0 5327600 0 0 6437300 0 0 244 444 495 495 1240 1402 3947;3948;3949;3950 4152;4153;4154;4155 3950 4155 20190902_JH_WT_Ubi_3 13014 3949 4154 20190902_JH_WT_Ubi_2 13460 3949 4154 20190902_JH_WT_Ubi_2 13460 sp|P07237|PDIA1_HUMAN 356 sp|P07237|PDIA1_HUMAN sp|P07237|PDIA1_HUMAN sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens OX=9606 GN=P4HB PE=1 SV=3 1 59.2475 0.0228437 59.248 16.272 59.248 1 59.2475 0.0228437 59.248 1 M EFCHRFLEGKIKPHLMSQELPEDWDKQPVKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX PHLM(1)SQELPEDWDK PHLM(59.25)SQELPEDWDK 4 3 1.6655 1316200 1316200 0 0 NaN 0 0 1316200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1316200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 245 444 356 356 3377 3856 10816 11379 10816 11379 20190821_JH_WT_Ubi 6856 10816 11379 20190821_JH_WT_Ubi 6856 10816 11379 20190821_JH_WT_Ubi 6856 sp|P07339|CATD_HUMAN 326 sp|P07339|CATD_HUMAN sp|P07339|CATD_HUMAN sp|P07339|CATD_HUMAN Cathepsin D OS=Homo sapiens OX=9606 GN=CTSD PE=1 SV=1 1 52.8233 0.0254136 54.094 15.728 52.823 1 54.0937 0.0254136 54.094 1 52.8233 0.0271552 52.823 M LQKAIGAVPLIQGEYMIPCEKVSTLPAITLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPXXXXXXXXXX AIGAVPLIQGEYM(1)IPCEK AIGAVPLIQGEYM(52.82)IPCEK 13 2 -1.2979 9251000 9251000 0 0 NaN 0 0 0 0 0 0 0 5025300 4225700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5025300 0 0 4225700 0 0 246 445 326 326 161 185 543;544 594;595 544 595 20190902_JH_WT_Ubi_3 12988 543 594 20190902_JH_WT_Ubi_2 13465 543 594 20190902_JH_WT_Ubi_2 13465 sp|P07339|CATD_HUMAN 301 sp|P07339|CATD_HUMAN sp|P07339|CATD_HUMAN sp|P07339|CATD_HUMAN Cathepsin D OS=Homo sapiens OX=9606 GN=CTSD PE=1 SV=1 1 123.433 3.06633E-11 123.43 90.452 123.43 1 123.433 3.06633E-11 123.43 1 M CKEGCEAIVDTGTSLMVGPVDEVRELQKAIG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPXXXXXXX EGCEAIVDTGTSLM(1)VGPVDEVR EGCEAIVDTGTSLM(123.43)VGPVDEVR 14 3 -2.7114 1385600 1385600 0 0 NaN 0 0 0 0 0 0 0 1385600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1385600 0 0 0 0 0 247 445 301 301 893 1011 2841 2989 2841 2989 20190902_JH_WT_Ubi_2 12937 2841 2989 20190902_JH_WT_Ubi_2 12937 2841 2989 20190902_JH_WT_Ubi_2 12937 sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN 118;136;118 sp|P07355|ANXA2_HUMAN sp|P07355|ANXA2_HUMAN sp|P07355|ANXA2_HUMAN Annexin A2 OS=Homo sapiens OX=9606 GN=ANXA2 PE=1 SV=2;sp|P07355-2|ANXA2_HUMAN Isoform 2 of Annexin A2 OS=Homo sapiens OX=9606 GN=ANXA2;sp|A6NMY6|AXA2L_HUMAN Putative annexin A2-like protein OS=Homo sapiens OX=9606 GN=ANXA2P2 PE=5 SV=2 1 73.7575 3.16013E-39 184.83 128.49 73.758 1 62.002 0.00778586 62.002 1 184.825 3.16013E-39 184.83 1 55.7633 0.0158909 55.763 1 47.6178 0.0323161 47.618 1 73.7575 1.95405E-06 114.55 1 130.467 2.23688E-09 130.47 1 148.063 5.52493E-18 148.06 1 M LKTPAQYDASELKASMKGLGTDEDSLIEIIC X;GlyGly (K);X;X;X;Deamidation (NQ);X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP TPAQYDASELKASM(1)K TPAQYDASELKASM(73.76)K 14 3 0.10193 47609000 47609000 0 0 2.2303 0 3702200 15462000 2650900 2406400 4331600 0 9349600 8594200 NaN 1.3768 1.5587 NaN NaN 2.0646 NaN 2.3351 3.2599 0 0 0 3702200 0 0 15462000 0 0 2650900 0 0 2406400 0 0 4331600 0 0 0 0 0 9349600 0 0 8594200 0 0 248 446 118 118 279;4542 328;5159 956;957;958;959;960;961;962;14480 1035;1036;1037;1038;1039;1040;1041;15220 14480 15220 20190902_JH_MUT_Ubi_2 5798 960 1039 20190821_JH_WT_Ubi 11448 960 1039 20190821_JH_WT_Ubi 11448 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN 330;330;330;330 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN sp|P68371|TBB4B_HUMAN sp|P07437|TBB5_HUMAN Tubulin beta chain OS=Homo sapiens OX=9606 GN=TUBB PE=1 SV=2;sp|P68371|TBB4B_HUMAN Tubulin beta-4B chain OS=Homo sapiens OX=9606 GN=TUBB4B PE=1 SV=1;sp|Q9BVA1|TBB2B_HUMAN Tubulin beta-2B chain OS=Homo sapiens OX=9606 GN=TUBB2B PE=1 SV= 1 99.7879 0.00182631 99.788 46.618 99.788 1 99.7879 0.00182631 99.788 1 M AVFRGRMSMKEVDEQMLNVQNKNSSYFVEWI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX EVDEQM(1)LNVQNK EVDEQM(99.79)LNVQNK 6 2 1.8374 8110400 8110400 0 0 NaN 0 0 0 0 0 0 0 0 8110400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8110400 0 0 249 448;1099 330;330 330 1128 1270 3584 3769 3584 3769 20190902_JH_WT_Ubi_3 7161 3584 3769 20190902_JH_WT_Ubi_3 7161 3584 3769 20190902_JH_WT_Ubi_3 7161 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|A6NNZ2|TBB8L_HUMAN;sp|Q3ZCM7|TBB8_HUMAN;sp|Q9BUF5|TBB6_HUMAN 267;267;267;267;267;267;267;267 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN;sp|Q3ZCM7|TBB8_HUMAN;sp|Q9BUF5|TBB6_HUMAN sp|P68371|TBB4B_HUMAN sp|P07437|TBB5_HUMAN Tubulin beta chain OS=Homo sapiens OX=9606 GN=TUBB PE=1 SV=2;sp|P68371|TBB4B_HUMAN Tubulin beta-4B chain OS=Homo sapiens OX=9606 GN=TUBB4B PE=1 SV=1;sp|P04350|TBB4A_HUMAN Tubulin beta-4A chain OS=Homo sapiens OX=9606 GN=TUBB4A PE=1 SV= 1 60.1571 0.0152744 65.809 26.3 60.157 1 65.8089 0.0152744 65.809 1 60.1571 0.0352006 60.157 1 M KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPXXXXXX LHFFM(1)PGFAPLTSR LHFFM(60.16)PGFAPLTSR 5 3 -2.0943 1114000 1114000 0 0 NaN 1114000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1114000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250 448;1099;1410;1878 267;267;267;267 267 2635 2996 8548;8549 8989;8990 8549 8990 20190821_JH_MUT_Ubi 10476 8548 8989 20190821_JH_EV_Ubi 11115 8548 8989 20190821_JH_EV_Ubi 11115 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN 233;233;233;233;233 sp|P07437|TBB5_HUMAN;sp|P68371|TBB4B_HUMAN sp|P68371|TBB4B_HUMAN sp|P07437|TBB5_HUMAN Tubulin beta chain OS=Homo sapiens OX=9606 GN=TUBB PE=1 SV=2;sp|P68371|TBB4B_HUMAN Tubulin beta-4B chain OS=Homo sapiens OX=9606 GN=TUBB4B PE=1 SV=1;sp|P04350|TBB4A_HUMAN Tubulin beta-4A chain OS=Homo sapiens OX=9606 GN=TUBB4A PE=1 SV= 1 41.0473 1.45007E-12 119.69 77.645 41.047 1 72.2708 0.0004701 72.271 1 47.0495 1.45007E-12 119.69 1 41.0473 5.63003E-10 104.57 1 84.6803 4.1174E-05 84.68 1 76.471 0.00016688 76.471 1 61.904 0.00016871 76.351 1 90.6938 1.34346E-06 90.694 1 111.243 4.96249E-12 111.24 1 69.0705 0.000284944 74.222 1 M TTPTYGDLNHLVSATMSGVTTCLRFPGQLNA X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX TLKLTTPTYGDLNHLVSATM(1)SGVTTCLR TLKLTTPTYGDLNHLVSATM(41.05)SGVTTCLR 20 4 2.0251 671730000 671730000 0 0 0.95606 25913000 150810000 152410000 15011000 10034000 74556000 81568000 49097000 87540000 1.0968 0.63599 0.67473 NaN 8.7105 0.97078 1.3815 1.9357 1.6327 25913000 0 0 150810000 0 0 152410000 0 0 15011000 0 0 10034000 0 0 74556000 0 0 81568000 0 0 49097000 0 0 87540000 0 0 251 448;1099 233;233 233 2831;4478 3208;3210;5078 9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9130;9131;9132;9133;14216 9584;9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9607;9608;9609;9610;9611;14921 14216 14921 20190821_JH_WT_Ubi 11462 9111 9587 20190821_JH_MUT_Ubi 11383 9111 9587 20190821_JH_MUT_Ubi 11383 sp|P07737|PROF1_HUMAN;CON__P02584 12;12 sp|P07737|PROF1_HUMAN sp|P07737|PROF1_HUMAN sp|P07737|PROF1_HUMAN Profilin-1 OS=Homo sapiens OX=9606 GN=PFN1 PE=1 SV=2 1 166.489 6.45195E-54 193.36 167.49 166.49 1 193.363 6.45195E-54 193.36 1 166.489 2.14079E-34 166.49 1 M ____MAGWNAYIDNLMADGTCQDAAIVGYKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPX AGWNAYIDNLM(1)ADGTCQDAAIVGYK AGWNAYIDNLM(166.49)ADGTCQDAAIVGYK 11 3 -0.060335 6374700 6374700 0 0 3.7 0 0 4518200 0 0 0 0 0 1856500 NaN NaN 2.6224 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4518200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1856500 0 0 252 451 12 12 144 166 502;503 553;554 503 554 20190902_JH_WT_Ubi_3 15796 502 553 20190821_JH_WT_Ubi 15839 502 553 20190821_JH_WT_Ubi 15839 sp|P07741|APT_HUMAN 136 sp|P07741|APT_HUMAN sp|P07741|APT_HUMAN sp|P07741|APT_HUMAN Adenine phosphoribosyltransferase OS=Homo sapiens OX=9606 GN=APRT PE=1 SV=2 1 59.6184 0.00394613 60.347 34.11 59.618 1 60.3475 0.00394613 60.347 1 57.2927 0.00580267 57.293 1 59.6184 0.00438921 59.618 1 M QRVVVVDDLLATGGTMNAACELLGRLQAEVL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPXXXXXX VVVVDDLLATGGTM(1)NAACELLGR VVVVDDLLATGGTM(59.62)NAACELLGR 14 3 -0.71806 4697800 4697800 0 0 NaN 0 0 2128900 0 0 0 0 1310900 1258000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2128900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1310900 0 0 1258000 0 0 253 452 136 136 5075 5769 16379;16380;16381 17213;17214;17215 16381 17215 20190902_JH_WT_Ubi_3 14881 16379 17213 20190821_JH_WT_Ubi 14351 16379 17213 20190821_JH_WT_Ubi 14351 sp|P07814|SYEP_HUMAN 1126 sp|P07814|SYEP_HUMAN sp|P07814|SYEP_HUMAN sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens OX=9606 GN=EPRS PE=1 SV=5 1 80.5412 0.00060792 80.541 50.114 80.541 1 80.5412 0.00060792 80.541 1 M ELAEPIAIRPTSETVMYPAYAKWVQSHRDLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX TELAEPIAIRPTSETVM(1)YPAYAK TELAEPIAIRPTSETVM(80.54)YPAYAK 17 3 -0.70779 4927900 4927900 0 0 NaN 0 0 0 0 0 0 0 0 4927900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4927900 0 0 254 453 1126 1126 4310 4890 13644 14313 13644 14313 20190902_JH_WT_Ubi_3 11044 13644 14313 20190902_JH_WT_Ubi_3 11044 13644 14313 20190902_JH_WT_Ubi_3 11044 sp|P07858|CATB_HUMAN 274 sp|P07858|CATB_HUMAN sp|P07858|CATB_HUMAN sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens OX=9606 GN=CTSB PE=1 SV=3 1 57.5251 0.00874264 59.345 29.982 57.525 0.694328 3.56309 0.00874264 59.345 1 57.5251 0.011716 57.525 1;2 M FLLYKSGVYQHVTGEMMGGHAIRILGWGVEN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPXXXXXXXX SGVYQHVTGEM(1)M(1)GGHAIR SGVYQHVTGEM(57.53)M(57.53)GGHAIR 11 3 -0.58307 72943000 46658000 26286000 0 1.2522 0 0 18419000 0 0 0 0 54524000 0 NaN NaN 0.55575 NaN NaN NaN NaN 13.291 0 0 0 0 0 0 0 18419000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28238000 26286000 0 0 0 0 255 454 274 274 3942 4481;4483 12501;12502;12507 13115;13116;13121 12507 13121 20190902_JH_WT_Ubi_2 5548 12501 13115 20190821_JH_WT_Ubi 4699 12501 13115 20190821_JH_WT_Ubi 4699 sp|P07858|CATB_HUMAN 275 sp|P07858|CATB_HUMAN sp|P07858|CATB_HUMAN sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens OX=9606 GN=CTSB PE=1 SV=3 1 57.5251 0.011716 57.525 29.556 57.525 1 57.5251 0.011716 57.525 1;2 M LLYKSGVYQHVTGEMMGGHAIRILGWGVENG X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPXXXXXXXXX SGVYQHVTGEM(1)M(1)GGHAIR SGVYQHVTGEM(57.53)M(57.53)GGHAIR 12 3 -0.58307 54524000 28238000 26286000 0 0.93603 0 0 0 0 0 0 0 54524000 0 NaN NaN 0 NaN NaN NaN NaN 13.291 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28238000 26286000 0 0 0 0 256 454 275 275 3942 4481;4483 12502;12507 13116;13121 12507 13121 20190902_JH_WT_Ubi_2 5548 12507 13121 20190902_JH_WT_Ubi_2 5548 12507 13121 20190902_JH_WT_Ubi_2 5548 sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN 521;643 sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 PE=1 SV=5;sp|P07900-2|HS90A_HUMAN Isoform 2 of Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 1 191.41 4.80399E-111 247.44 205.53 191.41 1 213.357 7.49667E-68 213.36 1 193.271 4.73063E-46 193.27 1 247.443 4.80399E-111 247.44 1 184.211 2.9343E-45 184.21 1 139.121 1.11798E-15 139.12 1 229.689 3.20259E-81 229.69 1 200.897 4.58545E-56 200.9 1 237.892 5.50855E-95 237.89 1 191.41 9.78655E-46 191.41 1 M AFVERLRKHGLEVIYMIEPIDEYCVQQLKEF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPXX HGLEVIYM(1)IEPIDEYCVQQLK HGLEVIYM(191.41)IEPIDEYCVQQLK 8 3 1.36 65381000 65381000 0 0 2.4877 3748900 5486900 20378000 872910 1757100 3689100 3714900 14469000 11265000 NaN 1.2403 1.5126 NaN NaN NaN 3.9967 9.2152 1.9139 3748900 0 0 5486900 0 0 20378000 0 0 872910 0 0 1757100 0 0 3689100 0 0 3714900 0 0 14469000 0 0 11265000 0 0 257 455 521 521 1848 2097 5897;5898;5899;5900;5901;5902;5903;5904;5905 6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218 5905 6218 20190902_JH_WT_Ubi_3 13480 5903 6215 20190821_JH_WT_Ubi 12565 5903 6215 20190821_JH_WT_Ubi 12565 sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN 716;838 sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 PE=1 SV=5;sp|P07900-2|HS90A_HUMAN Isoform 2 of Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 1 76.4812 3.84372E-39 150.44 129.52 76.481 1 60.2876 0.000169003 60.288 1 84.9707 1.305E-07 84.971 1 63.8809 5.98838E-05 63.881 1 112.88 1.12457E-13 112.88 1 150.436 3.84372E-39 150.44 1 76.4812 5.98334E-07 76.481 1 M DDPTADDTSAAVTEEMPPLEGDDDTSRMEEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX LGLGIDEDDPTADDTSAAVTEEM(1)PPLEGDDDTSR LGLGIDEDDPTADDTSAAVTEEM(76.48)PPLEGDDDTSR 23 3 0.79915 23542000 23542000 0 0 5.3047 1094600 0 6401200 939210 1663700 0 0 6184800 7258100 NaN NaN NaN NaN NaN NaN NaN 2.8799 3.1691 1094600 0 0 0 0 0 6401200 0 0 939210 0 0 1663700 0 0 0 0 0 0 0 0 6184800 0 0 7258100 0 0 258 455 716 716 2619 2975 8492;8493;8494;8495;8496;8497 8926;8927;8928;8929;8930;8931;8932;8933 8497 8933 20190902_JH_WT_Ubi_3 13618 8496 8931 20190902_JH_WT_Ubi_2 14069 8496 8931 20190902_JH_WT_Ubi_2 14069 sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN 371;493 sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 PE=1 SV=5;sp|P07900-2|HS90A_HUMAN Isoform 2 of Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 1 56.9055 0.0115876 56.906 13.498 56.906 1 56.9055 0.0115876 56.906 1 M KKKNNIKLYVRRVFIMDNCEELIPEYLNFIR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP VFIM(1)DNCEELIPEYLNFIR VFIM(56.91)DNCEELIPEYLNFIR 4 3 1.7789 1664100 1664100 0 0 NaN 0 0 0 0 0 0 0 1664100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1664100 0 0 0 0 0 259 455 371 371 4816 5465 15456 16234 15456 16234 20190902_JH_WT_Ubi_2 16314 15456 16234 20190902_JH_WT_Ubi_2 16314 15456 16234 20190902_JH_WT_Ubi_2 16314 sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN 474;596 sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 PE=1 SV=5;sp|P07900-2|HS90A_HUMAN Isoform 2 of Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 1 58.0902 0.0149224 58.09 41.775 58.09 1 58.0902 0.0149224 58.09 1 M LSELLRYYTSASGDEMVSLKDYCTRMKENQK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPXXXXXX YYTSASGDEM(1)VSLKDYCTR YYTSASGDEM(58.09)VSLKDYCTR 10 3 2.1838 1478800 1478800 0 0 NaN 0 0 0 0 0 1478800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1478800 0 0 0 0 0 0 0 0 0 0 0 260 455 474 474 5225 5949 16870 17739 16870 17739 20190902_JH_MUT_Ubi_2 7724 16870 17739 20190902_JH_MUT_Ubi_2 7724 16870 17739 20190902_JH_MUT_Ubi_2 7724 sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN 406;449 sp|P07954-2|FUMH_HUMAN sp|P07954-2|FUMH_HUMAN sp|P07954-2|FUMH_HUMAN Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens OX=9606 GN=FH;sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens OX=9606 GN=FH PE=1 SV=3 1 105.005 4.93126E-05 105.01 52.833 105.01 0.994411 22.5022 0.0298661 50.956 1 105.005 4.93126E-05 105.01 M CVVGIQANTERINKLMNESLMLVTALNPHIG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP LM(1)NESLM(1)LVTALNPHIGYDK LM(105.01)NESLM(105.01)LVTALNPHIGYDK 2 3 -0.35408 6217700 2946700 3271100 0 NaN 0 0 2946700 0 0 0 0 0 3271100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2946700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3271100 0 261 460 406 406 2720 3092;3093 8818;8819 9275;9276 8819 9276 20190902_JH_WT_Ubi_3 12465 8819 9276 20190902_JH_WT_Ubi_3 12465 8819 9276 20190902_JH_WT_Ubi_3 12465 sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN 411;454 sp|P07954-2|FUMH_HUMAN sp|P07954-2|FUMH_HUMAN sp|P07954-2|FUMH_HUMAN Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens OX=9606 GN=FH;sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens OX=9606 GN=FH PE=1 SV=3 1 105.005 4.93126E-05 105.01 52.833 105.01 1 105.005 4.93126E-05 105.01 M QANTERINKLMNESLMLVTALNPHIGYDKAA X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPXX LM(1)NESLM(1)LVTALNPHIGYDK LM(105.01)NESLM(105.01)LVTALNPHIGYDK 7 3 -0.35408 3271100 0 3271100 0 NaN 0 0 0 0 0 0 0 0 3271100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3271100 0 262 460 411 411 2720 3092;3093 8819 9276 8819 9276 20190902_JH_WT_Ubi_3 12465 8819 9276 20190902_JH_WT_Ubi_3 12465 8819 9276 20190902_JH_WT_Ubi_3 12465 sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN 125;63;156;24 sp|P08195|4F2_HUMAN;sp|P08195-2|4F2_HUMAN sp|P08195-2|4F2_HUMAN sp|P08195|4F2_HUMAN 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2 PE=1 SV=3;sp|P08195-3|4F2_HUMAN Isoform 3 of 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2;sp|P08195-4|4F2_HUMAN Isoform 4 of 4F2 cell-surfa 1 94.9113 4.74273E-32 151.6 123.64 94.911 1 87.9633 6.87614E-24 151.6 1 84.1133 6.77447E-21 123.76 1 94.9113 2.24853E-16 117.62 1 54.5816 7.14442E-26 140.59 1 60.1327 4.10092E-21 128.25 1 66.4484 1.19657E-20 125.79 1 62.3979 1.01365E-25 137.85 1 113.05 4.1034E-16 113.05 1 151.602 4.74273E-32 151.6 1;2 M MKEVELNELEPEKQPMNAASGAAMSLAGAEK Oxidation (M);GlyGly (K);X;X;X;X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K) XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP QPM(1)NAASGAAM(1)SLAGAEKNGLVK QPM(94.91)NAASGAAM(94.91)SLAGAEKNGLVK 3 3 0.79933 302060000 35332000 266730000 0 5.6117 771700 8610500 7259700 19270000 32314000 26841000 19928000 11974000 17022000 0.040828 0.54191 NaN NaN 13.218 2.6259 4.6904 5.6434 NaN 0 771700 0 4907400 3703100 0 2893700 4366000 0 3416600 15854000 0 3606600 28708000 0 6864500 19977000 0 6001000 13927000 0 1939200 10035000 0 0 17022000 0 263 462;463 125;24 24 1132;1133;3683 1274;1275;1276;1278;1280;4193;4194 3590;3591;3592;3593;3594;3595;3596;3598;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3622;3630;3631;3632;3633;3634;3635;3636;3637;11746;11747;11748;11749;11750;11751;11753 3776;3777;3778;3779;3780;3781;3782;3783;3785;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3816;3824;3825;3826;3827;3828;3829;3830;3831;12327;12328;12329;12330;12331;12332;12334 11751 12332 20190821_JH_WT_Ubi 6683 3615 3809 20190902_JH_WT_Ubi_3 10430 3615 3809 20190902_JH_WT_Ubi_3 10430 sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN 133;71;164;32 sp|P08195|4F2_HUMAN;sp|P08195-2|4F2_HUMAN sp|P08195-2|4F2_HUMAN sp|P08195|4F2_HUMAN 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2 PE=1 SV=3;sp|P08195-3|4F2_HUMAN Isoform 3 of 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2;sp|P08195-4|4F2_HUMAN Isoform 4 of 4F2 cell-surfa 1 94.9113 4.74273E-32 151.6 123.64 94.911 1 87.9633 6.87614E-24 151.6 1 84.1133 6.77447E-21 123.76 1 94.9113 2.24853E-16 117.62 1 54.5816 7.14442E-26 140.59 1 60.1327 4.10092E-21 128.25 1 66.4484 6.79338E-10 96.913 1 62.3979 1.01365E-25 137.85 1 113.05 4.1034E-16 113.05 1 151.602 4.74273E-32 151.6 1;2 M LEPEKQPMNAASGAAMSLAGAEKNGLVKIKV X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;X;X;GlyGly (K);X;GlyGly (K);X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX QPM(1)NAASGAAM(1)SLAGAEKNGLVK QPM(94.91)NAASGAAM(94.91)SLAGAEKNGLVK 11 3 0.79933 297480000 30752000 266730000 0 5.5266 771700 6309200 4366000 17589000 28708000 24949000 15694000 10035000 17022000 0.040828 0.39707 NaN NaN 11.743 2.4409 3.6939 4.7295 NaN 0 771700 0 2606100 3703100 0 0 4366000 0 1735100 15854000 0 0 28708000 0 4972600 19977000 0 1767100 13927000 0 0 10035000 0 0 17022000 0 264 462;463 133;32 32 1132;1133;3683 1274;1275;1276;1278;1280;4193;4194 3590;3591;3592;3593;3594;3595;3596;3597;3599;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3623;3624;3625;3626;3630;3631;3632;3633;3634;3635;3636;3637;11746;11747;11748;11749;11750;11751;11752;11754 3776;3777;3778;3779;3780;3781;3782;3783;3784;3786;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3817;3818;3819;3820;3824;3825;3826;3827;3828;3829;3830;3831;12327;12328;12329;12330;12331;12332;12333;12335 11751 12332 20190821_JH_WT_Ubi 6683 3615 3809 20190902_JH_WT_Ubi_3 10430 3615 3809 20190902_JH_WT_Ubi_3 10430 sp|P08195|4F2_HUMAN 102 sp|P08195|4F2_HUMAN sp|P08195|4F2_HUMAN sp|P08195|4F2_HUMAN 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2 PE=1 SV=3 1 160.116 1.01993E-39 160.12 142.4 160.12 1 97.0685 8.80123E-08 97.068 1 128.332 5.36838E-21 128.33 1 99.7222 1.11882E-10 99.722 1 83.7545 1.30419E-05 83.755 1 160.116 1.01993E-39 160.12 2 M DPPALASKNAEVTGTMSQDTEVDMKEVELNE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;Deamidation (NQ);X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP NAEVTGTM(1)SQDTEVDM(1)KEVELNELEPEK NAEVTGTM(160.12)SQDTEVDM(160.12)KEVELNELEPEK 8 3 0.18359 16019000 0 16019000 0 6.5193 4918500 1626200 0 2905300 3029900 0 3539500 0 0 NaN 0.66181 NaN NaN NaN NaN NaN NaN NaN 0 4918500 0 0 1626200 0 0 0 0 0 2905300 0 0 3029900 0 0 0 0 0 3539500 0 0 0 0 0 0 0 265 462 102 102 2994 3421;3422 9686;9687;9688;9689;9690 10200;10201;10202;10203;10204;10205;10206;10207 9690 10207 20190902_JH_MUT_Ubi_3 8947 9690 10207 20190902_JH_MUT_Ubi_3 8947 9690 10207 20190902_JH_MUT_Ubi_3 8947 sp|P08195|4F2_HUMAN 110 sp|P08195|4F2_HUMAN sp|P08195|4F2_HUMAN sp|P08195|4F2_HUMAN 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2 PE=1 SV=3 1 160.116 1.01993E-39 160.12 142.4 160.12 1 97.0685 8.80123E-08 97.068 1 128.332 5.36838E-21 128.33 1 99.7222 1.11882E-10 99.722 1 83.7545 1.30419E-05 83.755 1 160.116 1.01993E-39 160.12 1;2 M NAEVTGTMSQDTEVDMKEVELNELEPEKQPM X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M) PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX NAEVTGTM(1)SQDTEVDM(1)KEVELNELEPEK NAEVTGTM(160.12)SQDTEVDM(160.12)KEVELNELEPEK 16 3 0.18359 17210000 1190900 16019000 0 7.004 4918500 2817100 0 2905300 3029900 0 3539500 0 0 NaN 1.1465 NaN NaN NaN NaN NaN NaN NaN 0 4918500 0 1190900 1626200 0 0 0 0 0 2905300 0 0 3029900 0 0 0 0 0 3539500 0 0 0 0 0 0 0 266 462 110 110 2994 3421;3422 9686;9687;9688;9689;9690;9691 10200;10201;10202;10203;10204;10205;10206;10207;10208 9690 10207 20190902_JH_MUT_Ubi_3 8947 9690 10207 20190902_JH_MUT_Ubi_3 8947 9690 10207 20190902_JH_MUT_Ubi_3 8947 sp|P08195-2|4F2_HUMAN 9 sp|P08195-2|4F2_HUMAN sp|P08195-2|4F2_HUMAN sp|P08195-2|4F2_HUMAN Isoform 2 of 4F2 cell-surface antigen heavy chain OS=Homo sapiens OX=9606 GN=SLC3A2 1 83.3934 7.9936E-211 313.59 256.69 83.393 1 63.998 4.88502E-87 232.37 1 313.595 7.9936E-211 313.59 1 257.369 5.06834E-121 257.37 1 130.556 1.54222E-140 267.6 1 83.3934 3.82838E-103 246.42 1 207.155 5.27481E-60 207.16 1 174.191 2.44048E-184 292.35 1 221.898 1.00767E-72 221.9 1 241.977 4.31662E-88 241.98 1 M _______MSQDTEVDMKEVELNELEPEKQPM X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M) XXXXXXXPPPPPPPPPPPPPPPPPPPPPXXX SQDTEVDM(1)KEVELNELEPEK SQDTEVDM(83.39)KEVELNELEPEK 8 3 -1.5616 271410000 271410000 0 0 2.6325 49725000 20056000 16572000 57784000 41036000 14066000 29738000 14757000 17471000 2.7137 1.4378 1.609 3.3416 7.5241 0.95403 1.8721 NaN 2.443 49725000 0 0 20056000 0 0 16572000 0 0 57784000 0 0 41036000 0 0 14066000 0 0 29738000 0 0 14757000 0 0 17471000 0 0 267 463 9 9 2971;4116 3387;4671;4672;4675 9579;13004;13005;13006;13007;13008;13009;13010;13011;13012;13013;13014;13015;13016;13017;13018;13019;13031 10082;13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645;13646;13647;13648;13649;13650;13651;13652;13666 13031 13666 20190902_JH_EV_Ubi_3 8382 13008 13639 20190821_JH_MUT_Ubi 9325 13008 13639 20190821_JH_MUT_Ubi 9325 sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN 375;406;477 sp|P08237-2|PFKAM_HUMAN sp|P08237-2|PFKAM_HUMAN sp|P08237-2|PFKAM_HUMAN Isoform 2 of ATP-dependent 6-phosphofructokinase, muscle type OS=Homo sapiens OX=9606 GN=PFKM;sp|P08237|PFKAM_HUMAN ATP-dependent 6-phosphofructokinase, muscle type OS=Homo sapiens OX=9606 GN=PFKM PE=1 SV=2;sp|P08237-3|PFKAM_HUMAN I 1 78.4184 0.000214968 78.418 34.964 78.418 1 65.7645 0.0016388 65.765 1 75.3189 0.000288077 75.319 1 68.1681 0.0012976 68.168 1 78.4184 0.000214968 78.418 2 M VRPPVSKSGSHTVAVMNVGAPAAGMNAAVRS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX SGSHTVAVM(1)NVGAPAAGM(1)NAAVR SGSHTVAVM(78.42)NVGAPAAGM(78.42)NAAVR 9 3 -2.4516 14363000 0 14363000 0 14.899 1120500 0 3130300 2467300 0 0 0 7644900 0 NaN NaN NaN NaN NaN NaN NaN 7.93 NaN 0 1120500 0 0 0 0 0 3130300 0 0 2467300 0 0 0 0 0 0 0 0 0 0 0 7644900 0 0 0 0 268 464 375 375 3935 4471;4472 12479;12480;12481;12482 13092;13093;13094;13095 12482 13095 20190902_JH_WT_Ubi_2 7193 12482 13095 20190902_JH_WT_Ubi_2 7193 12482 13095 20190902_JH_WT_Ubi_2 7193 sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN 384;415;486 sp|P08237-2|PFKAM_HUMAN sp|P08237-2|PFKAM_HUMAN sp|P08237-2|PFKAM_HUMAN Isoform 2 of ATP-dependent 6-phosphofructokinase, muscle type OS=Homo sapiens OX=9606 GN=PFKM;sp|P08237|PFKAM_HUMAN ATP-dependent 6-phosphofructokinase, muscle type OS=Homo sapiens OX=9606 GN=PFKM PE=1 SV=2;sp|P08237-3|PFKAM_HUMAN I 1 78.4184 0.000214968 78.418 34.964 78.418 1 65.7645 0.0016388 65.765 1 75.3189 0.000288077 75.319 1 68.1681 0.0012976 68.168 1 78.4184 0.000214968 78.418 0.99999 49.9852 0.00253914 62.663 1;2 M SHTVAVMNVGAPAAGMNAAVRSTVRIGLIQG X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX SGSHTVAVM(1)NVGAPAAGM(1)NAAVR SGSHTVAVM(78.42)NVGAPAAGM(78.42)NAAVR 18 3 -2.4516 23382000 9019500 14363000 0 24.255 1120500 0 3130300 2467300 0 0 0 11573000 5091600 NaN NaN NaN NaN NaN NaN NaN 12.004 NaN 0 1120500 0 0 0 0 0 3130300 0 0 2467300 0 0 0 0 0 0 0 0 0 0 3927900 7644900 0 5091600 0 0 269 464 384 384 3935 4471;4472 12479;12480;12481;12482;12483;12484 13092;13093;13094;13095;13096;13097 12482 13095 20190902_JH_WT_Ubi_2 7193 12482 13095 20190902_JH_WT_Ubi_2 7193 12482 13095 20190902_JH_WT_Ubi_2 7193 sp|P08238|HS90B_HUMAN;sp|Q58FF7|H90B3_HUMAN 513;386 sp|P08238|HS90B_HUMAN sp|P08238|HS90B_HUMAN sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta OS=Homo sapiens OX=9606 GN=HSP90AB1 PE=1 SV=4;sp|Q58FF7|H90B3_HUMAN Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens OX=9606 GN=HSP90AB3P PE=5 SV=1 1 107.623 1.26093E-05 107.62 25.502 107.62 1 107.623 1.26093E-05 107.62 1 M AFVERVRKRGFEVVYMTEPIDEYCVQQLKEF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPXX GFEVVYM(1)TEPIDEYCVQQLK GFEVVYM(107.62)TEPIDEYCVQQLK 7 3 -0.05665 2736800 2736800 0 0 2.034 0 0 0 0 0 0 0 2736800 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2736800 0 0 0 0 0 270 465 513 513 1450 1651 4606 4839 4606 4839 20190902_JH_WT_Ubi_2 13988 4606 4839 20190902_JH_WT_Ubi_2 13988 4606 4839 20190902_JH_WT_Ubi_2 13988 sp|P08238|HS90B_HUMAN 466 sp|P08238|HS90B_HUMAN sp|P08238|HS90B_HUMAN sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta OS=Homo sapiens OX=9606 GN=HSP90AB1 PE=1 SV=4 1 88.2823 6.61893E-05 100.97 73.94 88.282 1 96.562 0.000116693 96.562 1 56.3465 0.0121247 56.347 1 100.966 6.61893E-05 100.97 1 91.9257 0.000186243 91.926 1 88.2823 0.000240898 88.282 1 M LSELLRYHTSQSGDEMTSLSEYVSRMKETQK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPXXXXXX YHTSQSGDEM(1)TSLSEYVSR YHTSQSGDEM(88.28)TSLSEYVSR 10 3 0.21218 49336000 49336000 0 0 8.9297 2961300 871620 11891000 0 0 0 0 14055000 19557000 NaN NaN 2.1523 NaN NaN NaN NaN NaN NaN 2961300 0 0 871620 0 0 11891000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14055000 0 0 19557000 0 0 271 465 466 466 5154 5861 16615;16616;16617;16618;16619 17463;17464;17465;17466;17467 16619 17467 20190902_JH_WT_Ubi_3 7906 16617 17465 20190821_JH_WT_Ubi 6202 16617 17465 20190821_JH_WT_Ubi 6202 sp|P08582|TRFM_HUMAN 312 sp|P08582|TRFM_HUMAN sp|P08582|TRFM_HUMAN sp|P08582|TRFM_HUMAN Melanotransferrin OS=Homo sapiens OX=9606 GN=MELTF PE=1 SV=2 1 70.3345 0.00222957 70.334 43.404 70.334 1 70.3345 0.00222957 70.334 1 M NEGQRLFSHEGSSFQMFSSEAYGQKDLLFKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX LFSHEGSSFQM(1)FSSEAYGQK LFSHEGSSFQM(70.33)FSSEAYGQK 11 3 0.058954 1680300 1680300 0 0 NaN 0 0 0 0 0 0 0 0 1680300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1680300 0 0 272 471 312 312 2596 2950 8421 8854 8421 8854 20190902_JH_WT_Ubi_3 9615 8421 8854 20190902_JH_WT_Ubi_3 9615 8421 8854 20190902_JH_WT_Ubi_3 9615 sp|P08582|TRFM_HUMAN 660 sp|P08582|TRFM_HUMAN sp|P08582|TRFM_HUMAN sp|P08582|TRFM_HUMAN Melanotransferrin OS=Homo sapiens OX=9606 GN=MELTF PE=1 SV=2 1 45.1154 0.0309613 45.115 16.483 45.115 1 45.1154 0.0309613 45.115 1 M AQDLFGDDHNKNGFKMFDSSNYHGQDLLFKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)FDSSNYHGQDLLFK M(45.12)FDSSNYHGQDLLFK 1 3 -2.6285 1537500 1537500 0 0 NaN 0 0 0 0 0 0 0 1537500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1537500 0 0 0 0 0 273 471 660 660 2910 3305 9379 9872 9379 9872 20190902_JH_WT_Ubi_2 4592 9379 9872 20190902_JH_WT_Ubi_2 4592 9379 9872 20190902_JH_WT_Ubi_2 4592 sp|P08621-2|RU17_HUMAN;sp|P08621|RU17_HUMAN;sp|P08621-4|RU17_HUMAN 307;316;220 sp|P08621-2|RU17_HUMAN sp|P08621-2|RU17_HUMAN sp|P08621-2|RU17_HUMAN Isoform 2 of U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70;sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2;sp|P08621-4|RU17_HUMAN Isoform 4 of 1 70.8331 1.34926E-05 70.833 46.422 70.833 1 70.8331 1.34926E-05 70.833 1 M RERERKEELRGGGGDMAEPSEAGDAPPDDGP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP GGGGDM(1)AEPSEAGDAPPDDGPPGELGPDGPDGPEEK GGGGDM(70.83)AEPSEAGDAPPDDGPPGELGPDGPDGPEEK 6 3 0.62652 1532900 1532900 0 0 NaN 0 0 0 0 0 0 0 1532900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1532900 0 0 0 0 0 274 472 307 307 1480 1687 4719 4959 4719 4959 20190902_JH_WT_Ubi_2 10439 4719 4959 20190902_JH_WT_Ubi_2 10439 4719 4959 20190902_JH_WT_Ubi_2 10439 sp|P08648|ITA5_HUMAN 505 sp|P08648|ITA5_HUMAN sp|P08648|ITA5_HUMAN sp|P08648|ITA5_HUMAN Integrin alpha-5 OS=Homo sapiens OX=9606 GN=ITGA5 PE=1 SV=2 1 47.9913 0.0297107 47.991 16.173 47.991 1 47.9913 0.0297107 47.991 1 M RPIVSASASLTIFPAMFNPEERSCSLEGNPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX GRPIVSASASLTIFPAM(1)FNPEER GRPIVSASASLTIFPAM(47.99)FNPEER 17 3 3.5799 3299900 3299900 0 0 NaN 0 0 3299900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3299900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275 473 505 505 1681 1916 5372 5655 5372 5655 20190821_JH_WT_Ubi 11783 5372 5655 20190821_JH_WT_Ubi 11783 5372 5655 20190821_JH_WT_Ubi 11783 sp|P08648|ITA5_HUMAN 1036 sp|P08648|ITA5_HUMAN sp|P08648|ITA5_HUMAN sp|P08648|ITA5_HUMAN Integrin alpha-5 OS=Homo sapiens OX=9606 GN=ITGA5 PE=1 SV=2 1 63.6389 0.0106058 63.639 25.263 63.639 1 63.6389 0.0106058 63.639 1 M YKLGFFKRSLPYGTAMEKAQLKPPATSDA__ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPXX SLPYGTAM(1)EKAQLKPPATSDA SLPYGTAM(63.64)EKAQLKPPATSDA 8 3 1.3211 5260500 5260500 0 0 NaN 0 0 0 0 0 0 0 0 5260500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5260500 0 0 276 473 1036 1036 4039 4587 12794 13418 12794 13418 20190902_JH_WT_Ubi_3 8560 12794 13418 20190902_JH_WT_Ubi_3 8560 12794 13418 20190902_JH_WT_Ubi_3 8560 sp|P08670|VIME_HUMAN 154 sp|P08670|VIME_HUMAN sp|P08670|VIME_HUMAN sp|P08670|VIME_HUMAN Vimentin OS=Homo sapiens OX=9606 GN=VIM PE=1 SV=4 1 63.4265 0.0278879 63.426 33.617 63.426 1 63.4265 0.0278879 63.426 M KGQGKSRLGDLYEEEMRELRRQVDQLTNDKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPXXXXXXXXXXXXXX LGDLYEEEM(1)R LGDLYEEEM(63.43)R 9 2 0.59704 843890 843890 0 0 NaN 843890 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 843890 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277 474 154 154 2602 2956 8435 8868 8435 8868 20190821_JH_EV_Ubi 6481 8435 8868 20190821_JH_EV_Ubi 6481 8435 8868 20190821_JH_EV_Ubi 6481 sp|P08670|VIME_HUMAN 193 sp|P08670|VIME_HUMAN sp|P08670|VIME_HUMAN sp|P08670|VIME_HUMAN Vimentin OS=Homo sapiens OX=9606 GN=VIM PE=1 SV=4 1 73.1376 0.00648213 73.138 42.026 73.138 1 73.1376 0.00648213 73.138 1 M LAEDIMRLREKLQEEMLQREEAENTLQSFRQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPX LQEEM(1)LQREEAENTLQSFR LQEEM(73.14)LQREEAENTLQSFR 5 3 3.2292 826890 826890 0 0 NaN 0 826890 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 826890 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278 474 193 193 2775 3151 8984 9453 8984 9453 20190821_JH_MUT_Ubi 7764 8984 9453 20190821_JH_MUT_Ubi 7764 8984 9453 20190821_JH_MUT_Ubi 7764 sp|P08684|CP3A4_HUMAN;sp|P24462|CP3A7_HUMAN;sp|P24462-2|CP3A7_HUMAN 275;275;275 sp|P08684|CP3A4_HUMAN sp|P08684|CP3A4_HUMAN sp|P08684|CP3A4_HUMAN Cytochrome P450 3A4 OS=Homo sapiens OX=9606 GN=CYP3A4 PE=1 SV=4;sp|P24462|CP3A7_HUMAN Cytochrome P450 3A7 OS=Homo sapiens OX=9606 GN=CYP3A7 PE=1 SV=2;sp|P24462-2|CP3A7_HUMAN Isoform 2 of Cytochrome P450 3A7 OS=Homo sapiens OX=9606 GN= 1 73.9005 0.00647022 73.9 7.368 73.9 1 73.9005 0.00647022 73.9 1 M RLEDTQKHRVDFLQLMIDSQNSKETESHKAL X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPXXXXXXXX HRVDFLQLM(1)IDSQNSK HRVDFLQLM(73.9)IDSQNSK 9 2 -2.2754 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279 475 275 275 1989 2265 6509 6848 6509 6848 20190821_JH_WT_Ubi 11900 6509 6848 20190821_JH_WT_Ubi 11900 6509 6848 20190821_JH_WT_Ubi 11900 sp|P08708|RS17_HUMAN 126 sp|P08708|RS17_HUMAN sp|P08708|RS17_HUMAN sp|P08708|RS17_HUMAN 40S ribosomal protein S17 OS=Homo sapiens OX=9606 GN=RPS17 PE=1 SV=2 1 50.2259 1.16661E-68 217.67 165.65 50.226 1 183.71 2.0707E-45 183.71 1 217.667 1.16661E-68 217.67 1 114.559 1.46569E-08 114.56 1 128.721 1.68157E-11 128.72 1 50.2259 1.9064E-36 171.85 1 128.743 1.67575E-11 128.74 1 M FGSLSNLQVTQPTVGMNFKTPRGPV______ X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX LLDFGSLSNLQVTQPTVGM(1)NFK LLDFGSLSNLQVTQPTVGM(50.23)NFK 19 3 -1.2798 39182000 39182000 0 0 11.881 0 3558000 8985200 0 0 3768100 6561400 5768400 6509500 NaN 1.0788 NaN NaN NaN NaN NaN NaN NaN 0 0 0 3558000 0 0 8985200 0 0 0 0 0 0 0 0 3768100 0 0 6561400 0 0 5768400 0 0 6509500 0 0 280 476 126 126 1036;2675 1166;3041;3043 3286;8685;8686;8687;8688;8689;8690;8692 3454;9133;9134;9135;9136;9137;9138;9140 8692 9140 20190902_JH_WT_Ubi_2 15520 8688 9136 20190821_JH_WT_Ubi 14334 8688 9136 20190821_JH_WT_Ubi 14334 sp|P08727|K1C19_HUMAN 84 sp|P08727|K1C19_HUMAN sp|P08727|K1C19_HUMAN sp|P08727|K1C19_HUMAN Keratin, type I cytoskeletal 19 OS=Homo sapiens OX=9606 GN=KRT19 PE=1 SV=4 1 79.9111 1.97565E-06 79.911 63.29 79.911 1 79.9111 1.97565E-06 79.911 1 M LTASDGLLAGNEKLTMQNLNDRLASYLDKVR X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX FVSSSSSGAYGGGYGGVLTASDGLLAGNEKLTM(1)QNLNDR FVSSSSSGAYGGGYGGVLTASDGLLAGNEKLTM(79.91)QNLNDR 33 3 3.6974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 281 477 84 84 1334 1513 4213 4430 4213 4430 20190821_JH_MUT_Ubi 11279 4213 4430 20190821_JH_MUT_Ubi 11279 4213 4430 20190821_JH_MUT_Ubi 11279 sp|P08865|RSSA_HUMAN 34 sp|P08865|RSSA_HUMAN sp|P08865|RSSA_HUMAN sp|P08865|RSSA_HUMAN 40S ribosomal protein SA OS=Homo sapiens OX=9606 GN=RPSA PE=1 SV=4 1 112.824 5.42816E-57 205 157.8 112.82 1 149.527 3.30306E-22 149.53 1 174.715 7.6362E-37 174.72 1 177.406 5.16756E-37 177.41 1 101.615 4.573E-07 101.61 1 205.002 5.42816E-57 205 1 112.824 9.4852E-09 112.82 1 M LAAGTHLGGTNLDFQMEQYIYKRKSDGIYII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX FLAAGTHLGGTNLDFQM(1)EQYIYK FLAAGTHLGGTNLDFQM(112.82)EQYIYK 17 3 0.18396 64287000 64287000 0 0 NaN 0 7724400 25339000 0 0 6387500 3054400 9649600 12132000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 7724400 0 0 25339000 0 0 0 0 0 0 0 0 6387500 0 0 3054400 0 0 9649600 0 0 12132000 0 0 282 480 34 34 1233 1392 3904;3905;3906;3907;3908;3909 4109;4110;4111;4112;4113;4114 3909 4114 20190902_JH_WT_Ubi_3 11915 3908 4113 20190902_JH_WT_Ubi_2 12395 3908 4113 20190902_JH_WT_Ubi_2 12395 sp|P09622-2|DLDH_HUMAN;sp|P09622-3|DLDH_HUMAN;sp|P09622|DLDH_HUMAN 262;313;361 sp|P09622-2|DLDH_HUMAN sp|P09622-2|DLDH_HUMAN sp|P09622-2|DLDH_HUMAN Isoform 2 of Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD;sp|P09622-3|DLDH_HUMAN Isoform 3 of Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD;sp|P09622|DLDH_HUMAN Dihydrolipoyl d 1 99.8135 3.42105E-18 154.39 107.3 99.813 1 154.393 3.42105E-18 154.39 1 120.9 7.47655E-07 120.9 1 102.505 5.68181E-05 102.5 1 102.028 5.97251E-05 102.03 1 67.1534 0.00405779 67.153 1 115.583 2.48045E-06 115.58 1 99.8135 7.3206E-05 99.813 1 M KIPNIYAIGDVVAGPMLAHKAEDEGIICVEG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX IPNIYAIGDVVAGPM(1)LAHK IPNIYAIGDVVAGPM(99.81)LAHK 15 3 0.6815 23008000 23008000 0 0 3.3703 7244900 0 0 3490100 2769600 2441600 1308900 2209900 3543500 2.453 0 0 NaN NaN NaN NaN NaN NaN 7244900 0 0 0 0 0 0 0 0 3490100 0 0 2769600 0 0 2441600 0 0 1308900 0 0 2209900 0 0 3543500 0 0 283 491 262 262 2229 2538 7319;7320;7321;7322;7323;7324;7325 7698;7699;7700;7701;7702;7703;7704 7325 7704 20190902_JH_WT_Ubi_3 12882 7319 7698 20190821_JH_EV_Ubi 11907 7319 7698 20190821_JH_EV_Ubi 11907 sp|P09622-2|DLDH_HUMAN;sp|P09622-3|DLDH_HUMAN;sp|P09622|DLDH_HUMAN 364;415;463 sp|P09622-2|DLDH_HUMAN sp|P09622-2|DLDH_HUMAN sp|P09622-2|DLDH_HUMAN Isoform 2 of Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD;sp|P09622-3|DLDH_HUMAN Isoform 3 of Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD;sp|P09622|DLDH_HUMAN Dihydrolipoyl d 1 67.0325 5.32739E-05 67.033 42.756 67.033 1 67.0325 5.32739E-05 67.033 1 M DRVLGAHILGPGAGEMVNEAALALEYGASCE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP VLGAHILGPGAGEM(1)VNEAALALEYGASCEDIAR VLGAHILGPGAGEM(67.03)VNEAALALEYGASCEDIAR 14 3 -1.8775 2033400 2033400 0 0 NaN 0 0 2033400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2033400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284 491 364 364 4899 5562 15740 16541 15740 16541 20190821_JH_WT_Ubi 13062 15740 16541 20190821_JH_WT_Ubi 13062 15740 16541 20190821_JH_WT_Ubi 13062 sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN 72;72;72 sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1;sp|P09651-3|ROA1_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1;sp|P09651|ROA1_HUMAN Hete 1 241.641 1.87944E-140 270.99 205.81 241.64 1 251.277 2.84768E-103 251.28 1 270.987 1.87944E-140 270.99 1 252.105 2.19389E-103 252.1 1 192.235 6.03353E-40 192.23 1 251.277 2.84768E-103 251.28 1 177.997 4.84015E-31 178 1 191.443 7.75303E-40 191.44 1 241.641 1.02568E-87 241.64 1 M FGFVTYATVEEVDAAMNARPHKVDGRVVEPK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX GFGFVTYATVEEVDAAM(1)NAR GFGFVTYATVEEVDAAM(241.64)NAR 17 3 0.19401 53865000 53865000 0 0 7.3373 2703000 3181700 13261000 905230 0 3303000 2210200 10756000 17545000 NaN NaN 2.6156 NaN NaN NaN NaN 9.112 16.085 2703000 0 0 3181700 0 0 13261000 0 0 905230 0 0 0 0 0 3303000 0 0 2210200 0 0 10756000 0 0 17545000 0 0 285 492 72 72 1458 1660 4639;4640;4641;4642;4643;4644;4645;4646 4873;4874;4875;4876;4877;4878;4879;4880;4881 4646 4881 20190902_JH_WT_Ubi_3 13938 4641 4875 20190821_JH_MUT_Ubi 12445 4641 4875 20190821_JH_MUT_Ubi 12445 sp|P09651-2|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN 276;276 sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1;sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens OX=9606 GN=HNRNPA1L2 PE=2 SV=2 1 54.4919 2.12688E-06 64.065 50.916 54.492 1 64.0648 2.12688E-06 64.065 1 54.4919 6.61696E-06 54.492 1 M NDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG Deamidation (NQ);X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPM(1)K GGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPM(54.49)K 44 3 1.2576 745840 745840 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286 492 276 276 1484 1692;1693 4745;4746 4990;4991 4746 4991 20190902_JH_MUT_Ubi_3 11405 4745 4990 20190902_JH_MUT_Ubi_2 12456 4745 4990 20190902_JH_MUT_Ubi_2 12456 sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN 46;46;46;46 sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN sp|P09651-2|ROA1_HUMAN Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1;sp|P09651-3|ROA1_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1;sp|P09651|ROA1_HUMAN Hete 1 106.603 8.32749E-10 137.73 106.76 106.6 1 70.197 0.00662573 70.197 1 115.037 2.86153E-05 115.04 1 137.726 8.32749E-10 137.73 1 102.717 0.000324953 102.72 1 123.626 2.24584E-07 123.63 1 106.603 0.000195271 106.6 1 M RSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SHFEQWGTLTDCVVM(1)R SHFEQWGTLTDCVVM(106.6)R 15 3 0.69506 32598000 32598000 0 0 27.007 0 2191500 11224000 0 0 4597400 4966600 5252600 4366400 NaN NaN NaN NaN NaN 3.8088 NaN NaN NaN 0 0 0 2191500 0 0 11224000 0 0 0 0 0 0 0 0 4597400 0 0 4966600 0 0 5252600 0 0 4366400 0 0 287 492 46 46 3946 4488 12522;12523;12524;12525;12526;12527 13136;13137;13138;13139;13140;13141 12527 13141 20190902_JH_WT_Ubi_3 10523 12523 13137 20190902_JH_MUT_Ubi_2 10047 12523 13137 20190902_JH_MUT_Ubi_2 10047 sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN;sp|P34931|HS71L_HUMAN 381;381;326;383 sp|P0DMV8|HS71A_HUMAN;sp|P34931|HS71L_HUMAN sp|P0DMV8|HS71A_HUMAN sp|P0DMV8|HS71A_HUMAN Heat shock 70 kDa protein 1A OS=Homo sapiens OX=9606 GN=HSPA1A PE=1 SV=1;sp|P0DMV9|HS71B_HUMAN Heat shock 70 kDa protein 1B OS=Homo sapiens OX=9606 GN=HSPA1B PE=1 SV=1;sp|P0DMV8-2|HS71A_HUMAN Isoform 2 of Heat shock 70 kDa protein 1A 1 109.843 7.3918E-08 109.84 78.208 109.84 1 98.0191 1.24403E-06 98.019 1 64.6796 0.008638 64.68 1 109.843 7.3918E-08 109.84 1 M DEAVAYGAAVQAAILMGDKSEKVQDLLLLDV;DEAVAYGAAVQAAILMGDKSENVQDLLLLDV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SINPDEAVAYGAAVQAAILM(1)GDK SINPDEAVAYGAAVQAAILM(109.84)GDK 20 3 -0.27502 3260300 3260300 0 0 NaN 0 0 1585000 0 0 0 0 0 1675300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1585000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1675300 0 0 288 503;766 381;383 381 3972 4517 12594;12595;12596 13210;13211;13212 12596 13212 20190902_JH_WT_Ubi_3 15234 12596 13212 20190902_JH_WT_Ubi_3 15234 12596 13212 20190902_JH_WT_Ubi_3 15234 sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN 37;37;37 sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN Calmodulin-3 OS=Homo sapiens OX=9606 GN=CALM3 PE=1 SV=1;sp|P0DP24|CALM2_HUMAN Calmodulin-2 OS=Homo sapiens OX=9606 GN=CALM2 PE=1 SV=1;sp|P0DP23|CALM1_HUMAN Calmodulin-1 OS=Homo sapiens OX=9606 GN=CALM1 PE=1 SV=1 1 135.715 1.84497E-25 178.67 130.06 135.72 1 119.446 1.88855E-05 119.45 1 127.025 2.26505E-07 127.03 1 129.293 1.63638E-07 129.29 1 133.482 4.75188E-08 133.48 1 178.666 1.84497E-25 178.67 1 150.051 2.24253E-13 150.05 1 163.617 8.29244E-19 163.62 1 135.715 1.44378E-09 135.72 1 M KDGDGTITTKELGTVMRSLGQNPTEAELQDM GlyGly (K);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX DGDGTITTKELGTVM(1)R DGDGTITTKELGTVM(135.72)R 15 3 -0.092009 249090000 249090000 0 0 2.3701 15463000 19396000 0 21748000 19173000 35238000 41782000 58864000 37428000 NaN 1.5124 0 7.5327 5.7989 2.2339 1.8137 3.9586 2.4328 15463000 0 0 19396000 0 0 0 0 0 21748000 0 0 19173000 0 0 35238000 0 0 41782000 0 0 58864000 0 0 37428000 0 0 289 504 37 37 475 552 1513;1514;1515;1516;1517;1518;1519;1520 1606;1607;1608;1609;1610;1611;1612;1613 1520 1613 20190902_JH_WT_Ubi_3 8090 1517 1610 20190902_JH_MUT_Ubi_2 7332 1517 1610 20190902_JH_MUT_Ubi_2 7332 sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN 145;145;145 sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN Calmodulin-3 OS=Homo sapiens OX=9606 GN=CALM3 PE=1 SV=1;sp|P0DP24|CALM2_HUMAN Calmodulin-2 OS=Homo sapiens OX=9606 GN=CALM2 PE=1 SV=1;sp|P0DP23|CALM1_HUMAN Calmodulin-1 OS=Homo sapiens OX=9606 GN=CALM1 PE=1 SV=1 1 95.6243 3.9176E-06 95.624 70.467 95.624 1 95.6243 3.9176E-06 95.624 2 M DIDGDGQVNYEEFVQMMTAK___________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX EADIDGDGQVNYEEFVQM(1)M(1)TAK EADIDGDGQVNYEEFVQM(95.62)M(95.62)TAK 18 3 1.4915 4396300 0 4396300 0 NaN 0 0 0 0 0 0 0 0 4396300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4396300 0 290 504 145 145 784 888 2455 2585 2455 2585 20190902_JH_WT_Ubi_3 12167 2455 2585 20190902_JH_WT_Ubi_3 12167 2455 2585 20190902_JH_WT_Ubi_3 12167 sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN 146;146;146 sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN Calmodulin-3 OS=Homo sapiens OX=9606 GN=CALM3 PE=1 SV=1;sp|P0DP24|CALM2_HUMAN Calmodulin-2 OS=Homo sapiens OX=9606 GN=CALM2 PE=1 SV=1;sp|P0DP23|CALM1_HUMAN Calmodulin-1 OS=Homo sapiens OX=9606 GN=CALM1 PE=1 SV=1 1 95.6243 3.9176E-06 95.624 70.467 95.624 1 95.6243 3.9176E-06 95.624 2 M IDGDGQVNYEEFVQMMTAK____________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX EADIDGDGQVNYEEFVQM(1)M(1)TAK EADIDGDGQVNYEEFVQM(95.62)M(95.62)TAK 19 3 1.4915 4396300 0 4396300 0 NaN 0 0 0 0 0 0 0 0 4396300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4396300 0 291 504 146 146 784 888 2455 2585 2455 2585 20190902_JH_WT_Ubi_3 12167 2455 2585 20190902_JH_WT_Ubi_3 12167 2455 2585 20190902_JH_WT_Ubi_3 12167 sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN 77;77;77 sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN sp|P0DP25|CALM3_HUMAN Calmodulin-3 OS=Homo sapiens OX=9606 GN=CALM3 PE=1 SV=1;sp|P0DP24|CALM2_HUMAN Calmodulin-2 OS=Homo sapiens OX=9606 GN=CALM2 PE=1 SV=1;sp|P0DP23|CALM1_HUMAN Calmodulin-1 OS=Homo sapiens OX=9606 GN=CALM1 PE=1 SV=1 1 101.712 1.66685E-06 151.98 66.621 101.71 1 151.976 1.66685E-06 151.98 1 65.2336 0.0356637 65.234 1 101.712 0.00447782 101.71 1 M GTIDFPEFLTMMARKMKDTDSEEEIREAFRV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPXXXXX M(1)KDTDSEEEIR M(101.71)KDTDSEEEIR 1 3 0.13628 4365900 4365900 0 0 NaN 0 1337400 0 0 0 0 0 1375800 1652700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1337400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1375800 0 0 1652700 0 0 292 504 77 77 2925 3322 9418;9419;9420 9913;9914;9915 9420 9915 20190902_JH_WT_Ubi_3 4409 9418 9913 20190821_JH_MUT_Ubi 2751 9418 9913 20190821_JH_MUT_Ubi 2751 sp|P10253|LYAG_HUMAN 439 sp|P10253|LYAG_HUMAN sp|P10253|LYAG_HUMAN sp|P10253|LYAG_HUMAN Lysosomal alpha-glucosidase OS=Homo sapiens OX=9606 GN=GAA PE=1 SV=4 1 58.9139 0.00392802 58.914 29.53 58.914 1 58.9139 0.00392802 58.914 M FPAMVQELHQGGRRYMMIVDPAISSSGPAGS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP YM(1)M(1)IVDPAISSSGPAGSYRPYDEGLR YM(58.91)M(58.91)IVDPAISSSGPAGSYRPYDEGLR 2 3 -0.017473 2516500 0 2516500 0 NaN 0 0 2516500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2516500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 293 505 439 439 5176 5890 16708 17563 16708 17563 20190821_JH_WT_Ubi 9489 16708 17563 20190821_JH_WT_Ubi 9489 16708 17563 20190821_JH_WT_Ubi 9489 sp|P10253|LYAG_HUMAN 440 sp|P10253|LYAG_HUMAN sp|P10253|LYAG_HUMAN sp|P10253|LYAG_HUMAN Lysosomal alpha-glucosidase OS=Homo sapiens OX=9606 GN=GAA PE=1 SV=4 1 58.9139 0.00392802 58.914 29.53 58.914 1 58.9139 0.00392802 58.914 M PAMVQELHQGGRRYMMIVDPAISSSGPAGSY X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP YM(1)M(1)IVDPAISSSGPAGSYRPYDEGLR YM(58.91)M(58.91)IVDPAISSSGPAGSYRPYDEGLR 3 3 -0.017473 2516500 0 2516500 0 NaN 0 0 2516500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2516500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294 505 440 440 5176 5890 16708 17563 16708 17563 20190821_JH_WT_Ubi 9489 16708 17563 20190821_JH_WT_Ubi 9489 16708 17563 20190821_JH_WT_Ubi 9489 sp|P10515|ODP2_HUMAN 412 sp|P10515|ODP2_HUMAN sp|P10515|ODP2_HUMAN sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens OX=9606 GN=DLAT PE=1 SV=3 1 47.647 0.0031247 47.647 26.969 47.647 1 47.647 0.0031247 47.647 1 M VAPAPAAVVPPTGPGMAPVPTGVFTDIPISN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP VAPAPAAVVPPTGPGM(1)APVPTGVFTDIPISNIR VAPAPAAVVPPTGPGM(47.65)APVPTGVFTDIPISNIR 16 3 -0.39325 400930 400930 0 0 NaN 0 0 0 0 400930 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 400930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295 509 412 412 4711 5345 15114 15881 15114 15881 20190902_JH_EV_Ubi_3 12714 15114 15881 20190902_JH_EV_Ubi_3 12714 15114 15881 20190902_JH_EV_Ubi_3 12714 sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN 40;40 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2;sp|P10809-2|CH60_HUMAN Isoform 2 of 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 1 155.488 5.31693E-68 214.66 163.39 155.49 1 114.554 2.0089E-08 114.55 1 110.326 1.30656E-07 110.33 1 187.735 1.82642E-45 187.73 1 137.988 1.17914E-15 137.99 1 72.3825 0.00774552 72.383 1 153.25 5.12982E-22 153.25 1 214.659 5.31693E-68 214.66 1 135.492 1.50167E-15 135.49 1 155.488 3.16376E-22 155.49 2 M AYAKDVKFGADARALMLQGVDLLADAVAVTM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M) XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP ALM(1)LQGVDLLADAVAVTM(1)GPK ALM(155.49)LQGVDLLADAVAVTM(155.49)GPK 3 3 -1.1243 84898000 0 84898000 0 NaN 3008700 5478800 31973000 1292100 1857600 6765400 4934400 11984000 17604000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3008700 0 0 5478800 0 0 31973000 0 0 1292100 0 0 1857600 0 0 6765400 0 0 4934400 0 0 11984000 0 0 17604000 0 296 515 40 40 210 238;239 684;685;686;687;688;689;690;691;692 750;751;752;753;754;755;756;757;758 692 758 20190902_JH_WT_Ubi_3 15653 689 755 20190902_JH_MUT_Ubi_3 13819 689 755 20190902_JH_MUT_Ubi_3 13819 sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN 55;55 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2;sp|P10809-2|CH60_HUMAN Isoform 2 of 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 1 155.488 5.31693E-68 214.66 163.39 155.49 1 114.554 2.0089E-08 114.55 1 110.326 1.30656E-07 110.33 1 187.735 1.82642E-45 187.73 1 137.988 1.17914E-15 137.99 1 72.3825 0.00774552 72.383 1 153.25 5.12982E-22 153.25 1 214.659 5.31693E-68 214.66 1 135.492 1.50167E-15 135.49 1 155.488 3.16376E-22 155.49 1;2 M MLQGVDLLADAVAVTMGPKGRTVIIEQSWGS Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX ALM(1)LQGVDLLADAVAVTM(1)GPK ALM(155.49)LQGVDLLADAVAVTM(155.49)GPK 18 3 -1.1243 100410000 15512000 84898000 0 NaN 3416600 8643700 40282000 1292100 1857600 8160400 5200600 12753000 18803000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 407830 3008700 0 3165000 5478800 0 8309100 31973000 0 0 1292100 0 0 1857600 0 1395000 6765400 0 266170 4934400 0 769780 11984000 0 1198800 17604000 0 297 515 55 55 210 238;239 684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699 750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767 692 758 20190902_JH_WT_Ubi_3 15653 689 755 20190902_JH_MUT_Ubi_3 13819 689 755 20190902_JH_MUT_Ubi_3 13819 sp|P10809|CH60_HUMAN 316 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 135.169 1.09792E-25 137.41 108.73 135.17 1 137.409 1.09792E-25 137.41 1 45.6393 0.00760227 45.639 1 89.8914 3.00367E-07 89.891 1 51.8114 0.00151096 51.811 1 135.169 1.3513E-25 135.17 1 M KAPGFGDNRKNQLKDMAIATGGAVFGEEGLT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP DM(1)AIATGGAVFGEEGLTLNLEDVQPHDLGK DM(135.17)AIATGGAVFGEEGLTLNLEDVQPHDLGK 2 3 0.87815 21970000 21970000 0 0 5.6728 3601400 915270 11828000 0 0 679360 0 0 4945800 NaN NaN 3.0542 NaN NaN NaN NaN NaN NaN 3601400 0 0 915270 0 0 11828000 0 0 0 0 0 0 0 0 679360 0 0 0 0 0 0 0 0 4945800 0 0 298 515 316 316 615 705 1935;1936;1937;1938;1939 2053;2054;2055;2056;2057 1939 2057 20190902_JH_WT_Ubi_3 14681 1935 2053 20190821_JH_EV_Ubi 13695 1935 2053 20190821_JH_EV_Ubi 13695 sp|P10809|CH60_HUMAN 145 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 83.877 0.000141731 115.24 68.201 83.877 1 115.24 0.000141731 115.24 1 106.293 0.000636246 106.29 1 83.877 0.00381812 83.877 1 M KISKGANPVEIRRGVMLAVDAVIAELKKQSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPXXXX GVM(1)LAVDAVIAELK GVM(83.88)LAVDAVIAELK 3 3 -0.46834 4417900 4417900 0 0 NaN 0 0 2230300 0 0 0 0 661760 1525900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2230300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 661760 0 0 1525900 0 0 299 515 145 145 1745 1985 5567;5568;5569 5861;5862;5863 5569 5863 20190902_JH_WT_Ubi_3 14832 5567 5861 20190821_JH_WT_Ubi 14248 5567 5861 20190821_JH_WT_Ubi 14248 sp|P10809|CH60_HUMAN 495 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 102.161 2.20816E-07 102.16 69.855 102.16 1 43.3802 0.012461 43.38 1 102.161 2.20816E-07 102.16 3 M AKNAGVEGSLIVEKIMQSSSEVGYDAMAGDF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP IM(1)QSSSEVGYDAM(1)AGDFVNM(1)VEK IM(102.16)QSSSEVGYDAM(102.16)AGDFVNM(102.16)VEK 2 3 0.28292 5958500 0 0 5958500 NaN 0 0 0 0 0 0 0 2715100 3243500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2715100 0 0 3243500 300 515 495 495 2210 2518 7287;7288 7665;7666 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 sp|P10809|CH60_HUMAN 506 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 102.161 2.20816E-07 102.16 69.855 102.16 1 43.3802 0.012461 43.38 1 102.161 2.20816E-07 102.16 3 M VEKIMQSSSEVGYDAMAGDFVNMVEKGIIDP X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPXXXXX IM(1)QSSSEVGYDAM(1)AGDFVNM(1)VEK IM(102.16)QSSSEVGYDAM(102.16)AGDFVNM(102.16)VEK 13 3 0.28292 5958500 0 0 5958500 NaN 0 0 0 0 0 0 0 2715100 3243500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2715100 0 0 3243500 301 515 506 506 2210 2518 7287;7288 7665;7666 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 sp|P10809|CH60_HUMAN 513 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 102.161 2.20816E-07 102.16 69.855 102.16 1 43.3802 0.012461 43.38 1 102.161 2.20816E-07 102.16 3 M SSEVGYDAMAGDFVNMVEKGIIDPTKVVRTA X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX IM(1)QSSSEVGYDAM(1)AGDFVNM(1)VEK IM(102.16)QSSSEVGYDAM(102.16)AGDFVNM(102.16)VEK 20 3 0.28292 5958500 0 0 5958500 NaN 0 0 0 0 0 0 0 2715100 3243500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2715100 0 0 3243500 302 515 513 513 2210 2518 7287;7288 7665;7666 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 7288 7666 20190902_JH_WT_Ubi_3 10993 sp|P10809|CH60_HUMAN 217 sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPD1 PE=1 SV=2 1 149.693 3.37823E-08 149.69 99.234 149.69 1 56.9362 0.0253557 56.936 1 99.8441 0.00198977 99.844 1 114.721 0.000390199 114.72 1 79.0886 0.00784853 79.089 1 86.2623 0.00465182 86.262 1 126.319 9.65272E-05 126.32 1 149.693 3.37823E-08 149.69 1 M KDGKTLNDELEIIEGMKFDRGYISPYFINTS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPXXXXXXXXXXXXXX TLNDELEIIEGM(1)K TLNDELEIIEGM(149.69)K 12 3 -0.62795 16431000 16431000 0 0 NaN 0 0 0 452600 346840 399170 396740 2039600 2359600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 452600 0 0 346840 0 0 399170 0 0 396740 0 0 2039600 0 0 2359600 0 0 303 515 217 217 4488 5090 14237;14238;14239;14240;14241;14242;14243 14942;14943;14944;14945;14946;14947;14948 14243 14948 20190902_JH_WT_Ubi_3 12495 14243 14948 20190902_JH_WT_Ubi_3 12495 14243 14948 20190902_JH_WT_Ubi_3 12495 sp|P11021|BIP_HUMAN 196 sp|P11021|BIP_HUMAN sp|P11021|BIP_HUMAN sp|P11021|BIP_HUMAN Endoplasmic reticulum chaperone BiP OS=Homo sapiens OX=9606 GN=HSPA5 PE=1 SV=2 1 115.781 0.000195165 115.78 91.55 115.78 1 115.781 0.000195165 115.78 M RQATKDAGTIAGLNVMRIINEPTAAAIAYGL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPXXXXXXXXXXXXXX DAGTIAGLNVM(1)R DAGTIAGLNVM(115.78)R 11 2 -0.4794 5575200 5575200 0 0 NaN 0 0 0 5575200 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 5575200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304 517 196 196 375 444 1227 1314 1227 1314 20190902_JH_EV_Ubi_2 8456 1227 1314 20190902_JH_EV_Ubi_2 8456 1227 1314 20190902_JH_EV_Ubi_2 8456 sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN 87;87 sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1;sp|P11142-2|HSP7C_HUMAN Isoform 2 of Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 1 95.5732 0.00409978 96.113 52.306 95.573 1 96.1135 0.022477 96.113 1 95.5732 0.00409978 95.573 1 M RLIGRRFDDAVVQSDMKHWPFMVVNDAGRPK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX FDDAVVQSDM(1)K FDDAVVQSDM(95.57)K 10 2 0.44007 7774400 7774400 0 0 NaN 2154000 0 0 0 5620400 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2154000 0 0 0 0 0 0 0 0 0 0 0 5620400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 305 519 87 87 1176 1328 3743;3744 3939;3940 3744 3940 20190902_JH_EV_Ubi_3 6033 3743 3939 20190821_JH_EV_Ubi 5503 3744 3940 20190902_JH_EV_Ubi_3 6033 sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN 93;93 sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1;sp|P11142-2|HSP7C_HUMAN Isoform 2 of Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 1 88.1008 1.0384E-06 138.2 99.406 88.101 1 138.205 1.0384E-06 138.2 1 90.7928 0.000296994 119.21 1 105.652 0.000829678 113.47 1 79.2014 0.0105701 79.201 1 96.2296 0.005419 96.23 1 89.4403 0.00439246 89.44 1 96.0589 0.00236226 105.65 1 56.9514 0.000500835 119.27 1 88.1008 0.00026626 123.8 1 M FDDAVVQSDMKHWPFMVVNDAGRPKVQVEYK X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPXXXXXX HWPFM(1)VVNDAGRPK HWPFM(88.1)VVNDAGRPK 5 3 0.95731 327180000 327180000 0 0 2.05 867510 2002400 11962000 1559700 1252000 3271400 5162200 17174000 14665000 0.11084 0.22609 0.19941 0.43223 NaN 3.9112 0.46949 0.55842 0.39919 867510 0 0 2002400 0 0 11962000 0 0 1559700 0 0 1252000 0 0 3271400 0 0 5162200 0 0 17174000 0 0 14665000 0 0 306 519 93 93 2041;2042 2329;2331;2333 6738;6739;6740;6741;6742;6743;6744;6745;6746;6751;6752;6753;6754;6755;6756;6757;6758;6767;6768;6769;6770;6771;6772 7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7102;7103;7104;7105;7106;7107;7108;7109;7118;7119;7120;7121;7122;7123;7124;7125 6772 7125 20190902_JH_WT_Ubi_3 8845 6751 7102 20190821_JH_EV_Ubi 6875 6751 7102 20190821_JH_EV_Ubi 6875 sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN 61;61 sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1;sp|P11142-2|HSP7C_HUMAN Isoform 2 of Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 1 72.6617 3.59658E-22 155.16 124.97 72.662 1 61.7317 1.49428E-15 146.27 1 141.7 7.29436E-16 141.7 1 61.9854 0.0051543 61.985 1 135.856 3.51184E-11 135.86 1 97.223 0.000572488 97.223 1 142.54 3.96181E-10 142.54 1 112.624 3.59658E-22 155.16 1 100.183 0.000399742 100.18 1 72.6617 0.000138531 84.573 1 M DTERLIGDAAKNQVAMNPTNTVFDAKRLIGR X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPXXXX NQVAM(1)NPTNTVFDAKR NQVAM(72.66)NPTNTVFDAKR 5 3 1.3463 207320000 207320000 0 0 4.4836 12604000 7384700 7465100 10402000 0 11716000 12612000 9863100 8428900 1.9928 0.87906 NaN 7.503 NaN 1.0563 1.2621 1.0905 NaN 12604000 0 0 7384700 0 0 7465100 0 0 10402000 0 0 0 0 0 11716000 0 0 12612000 0 0 9863100 0 0 8428900 0 0 307 519 61 61 2653;3207 3016;3664 8620;8621;8622;8623;8624;8625;8626;8627;10314;10315;10316;10317;10318;10319;10320;10321 9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;10857;10858;10859;10860;10861;10862;10863;10864 10321 10864 20190902_JH_WT_Ubi_3 7290 8624 9069 20190902_JH_MUT_Ubi_3 8324 8624 9069 20190902_JH_MUT_Ubi_3 8324 sp|P11142|HSP7C_HUMAN 617 sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1 1 64.0452 2.41064E-05 64.045 38.361 64.045 1 49.025 0.000881116 49.025 1 64.0452 2.41064E-05 64.045 1 52.01 0.00013491 54.596 1;2 M VCNPIITKLYQSAGGMPGGMPGGFPGGGAPP X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP LYQSAGGM(1)PGGM(1)PGGFPGGGAPPSGGASSGPTIEEVD LYQSAGGM(64.05)PGGM(64.05)PGGFPGGGAPPSGGASSGPTIEEVD 8 3 2.1522 40999000 1163400 39835000 0 NaN 0 0 9822000 0 0 0 0 12753000 17339000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 9822000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12753000 0 1163400 16175000 0 308 519 617 617 2871;4727 3254;3255;3256;5363 9240;9241;9242;9243;9245 9725;9726;9727;9728;9730 9243 9728 20190902_JH_WT_Ubi_2 13638 9243 9728 20190902_JH_WT_Ubi_2 13638 9243 9728 20190902_JH_WT_Ubi_2 13638 sp|P11142|HSP7C_HUMAN 621 sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1 1 64.0452 2.41064E-05 64.045 38.361 64.045 1 49.025 0.000881116 49.025 1 64.0452 2.41064E-05 64.045 1 52.01 0.000155371 52.01 1;2 M IITKLYQSAGGMPGGMPGGFPGGGAPPSGGA X;X;X;GlyGly (K);X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LYQSAGGM(1)PGGM(1)PGGFPGGGAPPSGGASSGPTIEEVD LYQSAGGM(64.05)PGGM(64.05)PGGFPGGGAPPSGGASSGPTIEEVD 12 3 2.1522 42873000 3037900 39835000 0 NaN 0 0 10972000 0 0 0 0 12753000 16175000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1150000 9822000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12753000 0 0 16175000 0 309 519 621 621 2871;4727 3254;3255;3256;5363 9240;9241;9242;9243;9244;15163 9725;9726;9727;9728;9729;15931 9243 9728 20190902_JH_WT_Ubi_2 13638 9243 9728 20190902_JH_WT_Ubi_2 13638 9243 9728 20190902_JH_WT_Ubi_2 13638 sp|P11166|GTR1_HUMAN 244 sp|P11166|GTR1_HUMAN sp|P11166|GTR1_HUMAN sp|P11166|GTR1_HUMAN Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens OX=9606 GN=SLC2A1 PE=1 SV=2 1 180.565 5.46169E-42 201.16 166.78 180.56 1 201.157 5.46169E-42 201.16 1 176.293 1.48528E-25 176.29 1 61.9621 0.00831835 61.962 1 161.944 5.29919E-19 161.94 1 188.193 6.74352E-33 188.19 1 169.984 6.27831E-20 169.98 1 171.152 2.61727E-25 171.15 1 162.813 4.79452E-19 162.81 1 180.565 5.44657E-26 180.56 1 M KKLRGTADVTHDLQEMKEESRQMMREKKVTI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPXXXXXXXXXX GTADVTHDLQEM(1)KEESR GTADVTHDLQEM(180.56)KEESR 12 3 0.52122 191460000 191460000 0 0 1.6276 23828000 5124100 0 27734000 23251000 12600000 10571000 27654000 25898000 1.2194 0.59617 0 3.3815 2.7096 1.3319 NaN 1.7589 1.3987 23828000 0 0 5124100 0 0 0 0 0 27734000 0 0 23251000 0 0 12600000 0 0 10571000 0 0 27654000 0 0 25898000 0 0 310 520 244 244 1708 1946 5445;5446;5447;5448;5449;5450;5451;5452;5453 5732;5733;5734;5735;5736;5737;5738;5739;5740 5453 5740 20190902_JH_WT_Ubi_3 6343 5445 5732 20190821_JH_EV_Ubi 4546 5445 5732 20190821_JH_EV_Ubi 4546 sp|P11169|GTR3_HUMAN 481 sp|P11169|GTR3_HUMAN sp|P11169|GTR3_HUMAN sp|P11169|GTR3_HUMAN Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens OX=9606 GN=SLC2A3 PE=1 SV=1 1 74.8902 0.00243528 74.89 36.032 74.89 1 74.8902 0.00243528 74.89 2 M EGQAHGADRSGKDGVMEMNSIEPAKETTTNV X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX SGKDGVM(1)EM(1)NSIEPAK SGKDGVM(74.89)EM(74.89)NSIEPAK 7 3 0.49331 1894700 0 1894700 0 NaN 0 0 0 0 0 0 0 0 1894700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1894700 0 311 521 481 481 3929 4461 12442 13049;13050 12442 13050 20190902_JH_WT_Ubi_3 5489 12442 13050 20190902_JH_WT_Ubi_3 5489 12442 13050 20190902_JH_WT_Ubi_3 5489 sp|P11169|GTR3_HUMAN 483 sp|P11169|GTR3_HUMAN sp|P11169|GTR3_HUMAN sp|P11169|GTR3_HUMAN Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens OX=9606 GN=SLC2A3 PE=1 SV=1 1 74.8902 0.00243528 74.89 36.032 74.89 1 74.8902 0.00243528 74.89 2 M QAHGADRSGKDGVMEMNSIEPAKETTTNV__ X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPXXXXXXXX SGKDGVM(1)EM(1)NSIEPAK SGKDGVM(74.89)EM(74.89)NSIEPAK 9 3 0.49331 1894700 0 1894700 0 NaN 0 0 0 0 0 0 0 0 1894700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1894700 0 312 521 483 483 3929 4461 12442 13049;13050 12442 13050 20190902_JH_WT_Ubi_3 5489 12442 13050 20190902_JH_WT_Ubi_3 5489 12442 13050 20190902_JH_WT_Ubi_3 5489 sp|P11177|ODPB_HUMAN;sp|P11177-2|ODPB_HUMAN 133;115 sp|P11177|ODPB_HUMAN sp|P11177|ODPB_HUMAN sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=PDHB PE=1 SV=3;sp|P11177-2|ODPB_HUMAN Isoform 2 of Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=PD 1 119.213 6.19592E-05 119.21 75.701 119.21 1 119.213 6.19592E-05 119.21 1 M QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX TYYM(1)SGGLQPVPIVFR TYYM(119.21)SGGLQPVPIVFR 4 2 -1.9736 3394400 3394400 0 0 1.4952 0 0 3394400 0 0 0 0 0 0 NaN NaN 1.4952 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3394400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313 522 133 133 4703 5336 15087 15854 15087 15854 20190821_JH_WT_Ubi 12370 15087 15854 20190821_JH_WT_Ubi 12370 15087 15854 20190821_JH_WT_Ubi 12370 sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN 260;290;306 sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD PE=1 SV=4;sp|P11413-3|G6PD_HUMAN Isoform 3 of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD;sp|P11413-2|G6PD_HUMAN Isoform Long of Glucose-6-phos 0.941571 12.0723 0.00134381 76.526 36.616 76.526 0.941571 12.0723 0.00134381 76.526 2 M GRGGYFDEFGIIRDVMQNHLLQMLCLVAMEK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP DVM(0.942)QNHLLQM(0.058)LCLVAM(1)EK DVM(12.07)QNHLLQM(-12.07)LCLVAM(59.93)EK 3 3 1.3045 757420 0 757420 0 NaN 0 0 0 0 0 0 0 757420 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 757420 0 0 0 0 314 525 260 260 742 843;844 2347 2475 2347 2475 20190902_JH_WT_Ubi_2 15326 2347 2475 20190902_JH_WT_Ubi_2 15326 2347 2475 20190902_JH_WT_Ubi_2 15326 sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN 273;303;319 sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD PE=1 SV=4;sp|P11413-3|G6PD_HUMAN Isoform 3 of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD;sp|P11413-2|G6PD_HUMAN Isoform Long of Glucose-6-phos 0.999999 59.9284 0.00134381 76.526 36.616 76.526 0.99999 52.6748 0.00563964 65.949 0.999999 59.9284 0.00134381 76.526 1;2 M DVMQNHLLQMLCLVAMEKPASTNSDDVRDEK X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX DVM(0.942)QNHLLQM(0.058)LCLVAM(1)EK DVM(12.07)QNHLLQM(-12.07)LCLVAM(59.93)EK 16 3 1.3045 2952500 2195100 757420 0 NaN 0 0 2195100 0 0 0 0 757420 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2195100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 757420 0 0 0 0 315 525 273 273 742 843;844 2346;2347 2474;2475 2347 2475 20190902_JH_WT_Ubi_2 15326 2347 2475 20190902_JH_WT_Ubi_2 15326 2347 2475 20190902_JH_WT_Ubi_2 15326 sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN 159;189;159 sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD PE=1 SV=4;sp|P11413-3|G6PD_HUMAN Isoform 3 of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens OX=9606 GN=G6PD;sp|P11413-2|G6PD_HUMAN Isoform Long of Glucose-6-phos 1 70.8885 0.0108543 70.889 38.459 70.889 1 60.3636 0.0213601 60.364 1 70.8885 0.0108543 70.889 1 M PTVYEAVTKNIHESCMSQIGWNRIIVEKPFG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPXXXXXXXX NIHESCM(1)SQIGWNR NIHESCM(70.89)SQIGWNR 7 3 -0.51221 3546900 3546900 0 0 NaN 0 0 0 0 0 0 0 1842900 1704000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1842900 0 0 1704000 0 0 316 525 159 159 3089 3536 9978;9979 10510;10511 9979 10511 20190902_JH_WT_Ubi_3 6664 9979 10511 20190902_JH_WT_Ubi_3 6664 9979 10511 20190902_JH_WT_Ubi_3 6664 sp|P12004|PCNA_HUMAN 229 sp|P12004|PCNA_HUMAN sp|P12004|PCNA_HUMAN sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens OX=9606 GN=PCNA PE=1 SV=1 1 46.5776 0.0183571 46.578 19.054 46.578 1 46.5776 0.0183571 46.578 1 M FFTKATPLSSTVTLSMSADVPLVVEYKIADM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPXXXX ATPLSSTVTLSM(1)SADVPLVVEYK ATPLSSTVTLSM(46.58)SADVPLVVEYK 12 3 -0.74353 1542700 1542700 0 0 NaN 0 1542700 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1542700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 317 530 229 229 303 356 1022 1106 1022 1106 20190821_JH_MUT_Ubi 12659 1022 1106 20190821_JH_MUT_Ubi 12659 1022 1106 20190821_JH_MUT_Ubi 12659 sp|P12429|ANXA3_HUMAN 84 sp|P12429|ANXA3_HUMAN sp|P12429|ANXA3_HUMAN sp|P12429|ANXA3_HUMAN Annexin A3 OS=Homo sapiens OX=9606 GN=ANXA3 PE=1 SV=3 1 67.8637 7.22087E-08 102.9 57.204 67.864 1 71.0007 0.000749699 71.001 1 102.9 7.22087E-08 102.9 1 72.0151 0.000506798 72.015 1 50.5386 0.0149124 50.539 1 67.8637 0.00112727 67.864 1 M KDDLKGDLSGHFEHLMVALVTPPAVFDAKQL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPXX GDLSGHFEHLM(1)VALVTPPAVFDAK GDLSGHFEHLM(67.86)VALVTPPAVFDAK 11 3 2.5271 30626000 30626000 0 0 1.1142 1601600 2998100 0 0 0 0 0 0 2379200 NaN 0.36031 0 NaN NaN 0 0 0 0.88459 1601600 0 0 2998100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2379200 0 0 318 535 84 84 1404 1598 4471;4472;4473;4474;4475 4697;4698;4699;4700;4701 4475 4701 20190902_JH_WT_Ubi_3 13191 4472 4698 20190821_JH_MUT_Ubi 11735 4472 4698 20190821_JH_MUT_Ubi 11735 sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN 586;586;586;586 sp|P12814-2|ACTN1_HUMAN sp|P12814-2|ACTN1_HUMAN sp|P12814-2|ACTN1_HUMAN Isoform 2 of Alpha-actinin-1 OS=Homo sapiens OX=9606 GN=ACTN1;sp|P12814|ACTN1_HUMAN Alpha-actinin-1 OS=Homo sapiens OX=9606 GN=ACTN1 PE=1 SV=2;sp|P12814-3|ACTN1_HUMAN Isoform 3 of Alpha-actinin-1 OS=Homo sapiens OX=9606 GN=ACTN1;sp| 1 69.4348 0.00138984 69.435 29.788 69.435 1 69.4348 0.00138984 69.435 1 M IHNEVSKIVQTYHVNMAGTNPYTTITPQEIN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ) XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP IVQTYHVNM(1)AGTNPYTTITPQEINGK IVQTYHVNM(69.43)AGTNPYTTITPQEINGK 9 3 -0.24276 974540 974540 0 0 NaN 0 0 0 0 0 0 0 0 974540 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974540 0 0 319 537 586 586 2295 2612 7546 7936 7546 7936 20190902_JH_WT_Ubi_3 10163 7546 7936 20190902_JH_WT_Ubi_3 10163 7546 7936 20190902_JH_WT_Ubi_3 10163 sp|P12882|MYH1_HUMAN 1230 sp|P12882|MYH1_HUMAN sp|P12882|MYH1_HUMAN sp|P12882|MYH1_HUMAN Myosin-1 OS=Homo sapiens OX=9606 GN=MYH1 PE=1 SV=3 0.999514 33.1356 0.0308987 43.116 8.3229 43.116 0.999514 33.1356 0.0308987 43.116 1 M QRVKQKLEKEKSEMKMEIDDLASNMETVSKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EIDDLASNMETVSKAKGNLEK M(33.14)EIDDLASNM(-33.14)ETVSKAKGNLEK 1 3 0.9442 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320 539 1230 1230 2900 3292 9347 9840 9347 9840 20190902_JH_MUT_Ubi_3 9902 9347 9840 20190902_JH_MUT_Ubi_3 9902 9347 9840 20190902_JH_MUT_Ubi_3 9902 sp|P12955-3|PEPD_HUMAN;sp|P12955-2|PEPD_HUMAN;sp|P12955|PEPD_HUMAN 265;288;329 sp|P12955-3|PEPD_HUMAN sp|P12955-3|PEPD_HUMAN sp|P12955-3|PEPD_HUMAN Isoform 3 of Xaa-Pro dipeptidase OS=Homo sapiens OX=9606 GN=PEPD;sp|P12955-2|PEPD_HUMAN Isoform 2 of Xaa-Pro dipeptidase OS=Homo sapiens OX=9606 GN=PEPD;sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase OS=Homo sapiens OX=9606 GN=PEPD PE=1 SV 1 70.9084 0.021417 70.908 53.435 70.908 1 70.9084 0.021417 70.908 1 M RAVMGAMKPGVWWPDMHRLADRIHLEELAHM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPXXXXXXXXXXXXX PGVWWPDM(1)HR PGVWWPDM(70.91)HR 8 3 -0.55644 2585400 2585400 0 0 NaN 0 0 0 0 0 0 0 0 2585400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2585400 0 0 321 540 265 265 3373 3851 10806 11369 10806 11369 20190902_JH_WT_Ubi_3 9285 10806 11369 20190902_JH_WT_Ubi_3 9285 10806 11369 20190902_JH_WT_Ubi_3 9285 sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN 162;203 sp|P12956-2|XRCC6_HUMAN sp|P12956-2|XRCC6_HUMAN sp|P12956-2|XRCC6_HUMAN Isoform 2 of X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6;sp|P12956|XRCC6_HUMAN X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6 PE=1 SV=2 1 76.3317 0.0119823 76.332 36.547 76.332 1 59.1984 0.0309384 59.198 1 73.9513 0.0138297 73.951 1 70.4116 0.0173833 70.412 1 76.3317 0.0119823 76.332 1 M TKAGDLRDTGIFLDLMHLKKPGGFDISLFYR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPXXXXXXXXXXXX DTGIFLDLM(1)HLK DTGIFLDLM(76.33)HLK 9 3 -0.80657 8489000 8489000 0 0 5.6755 0 1241800 2632600 0 0 1824900 0 2789800 0 NaN NaN 1.7601 NaN NaN NaN NaN NaN NaN 0 0 0 1241800 0 0 2632600 0 0 0 0 0 0 0 0 1824900 0 0 0 0 0 2789800 0 0 0 0 0 322 541 162 162 705 801 2201;2202;2203;2204 2327;2328;2329;2330 2204 2330 20190902_JH_WT_Ubi_2 13468 2204 2330 20190902_JH_WT_Ubi_2 13468 2204 2330 20190902_JH_WT_Ubi_2 13468 sp|P13010|XRCC5_HUMAN 427 sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN X-ray repair cross-complementing protein 5 OS=Homo sapiens OX=9606 GN=XRCC5 PE=1 SV=3 1 94.8816 0.000242644 94.882 64.392 94.882 1 94.8816 0.000242644 94.882 1 M IKHNYECLVYVQLPFMEDLRQYMFSSLKNSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPXXXXXXXXXXX HNYECLVYVQLPFM(1)EDLR HNYECLVYVQLPFM(94.88)EDLR 14 3 1.1776 5482200 5482200 0 0 NaN 0 0 5482200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5482200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 323 542 427 427 1962 2234 6380 6714 6380 6714 20190821_JH_WT_Ubi 13097 6380 6714 20190821_JH_WT_Ubi 13097 6380 6714 20190821_JH_WT_Ubi 13097 sp|P13010|XRCC5_HUMAN 461 sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN X-ray repair cross-complementing protein 5 OS=Homo sapiens OX=9606 GN=XRCC5 PE=1 SV=3 1 132.645 6.53874E-12 132.65 65.962 132.65 1 132.645 6.53874E-12 132.65 1 M PTEAQLNAVDALIDSMSLAKKDEKTDTLEDL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX YAPTEAQLNAVDALIDSM(1)SLAK YAPTEAQLNAVDALIDSM(132.65)SLAK 18 3 0.75058 2736000 2736000 0 0 NaN 0 0 0 0 0 0 0 0 2736000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2736000 0 0 324 542 461 461 5102 5800 16458 17295;17296 16458 17296 20190902_JH_WT_Ubi_3 14760 16458 17296 20190902_JH_WT_Ubi_3 14760 16458 17296 20190902_JH_WT_Ubi_3 14760 sp|P13010|XRCC5_HUMAN 331 sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN sp|P13010|XRCC5_HUMAN X-ray repair cross-complementing protein 5 OS=Homo sapiens OX=9606 GN=XRCC5 PE=1 SV=3 1 78.1909 0.00296918 78.191 47.708 78.191 1 78.1909 0.00296918 78.191 1 M YGSDIVPFSKVDEEQMKYKSEGKCFSVLGFC X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YGSDIVPFSKVDEEQM(1)K YGSDIVPFSKVDEEQM(78.19)K 16 3 2.0071 586680 586680 0 0 NaN 0 0 0 0 586680 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 586680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325 542 331 331 5150 5857 16610 17458 16610 17458 20190902_JH_EV_Ubi_3 8307 16610 17458 20190902_JH_EV_Ubi_3 8307 16610 17458 20190902_JH_EV_Ubi_3 8307 sp|P13073|COX41_HUMAN 39 sp|P13073|COX41_HUMAN sp|P13073|COX41_HUMAN sp|P13073|COX41_HUMAN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo sapiens OX=9606 GN=COX4I1 PE=1 SV=1 1 69.9792 0.0138355 69.979 41.802 69.979 1 69.9792 0.0138355 69.979 M HESVVKSEDFSLPAYMDRRDHPLPEVAHVKH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPXXXXXXXXXXXXX SEDFSLPAYM(1)DR SEDFSLPAYM(69.98)DR 10 2 0.29061 3313200 3313200 0 0 NaN 0 0 3313200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3313200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 326 543 39 39 3874 4399 12260 12856 12260 12856 20190821_JH_WT_Ubi 8998 12260 12856 20190821_JH_WT_Ubi 8998 12260 12856 20190821_JH_WT_Ubi 8998 sp|P13639|EF2_HUMAN 781 sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN Elongation factor 2 OS=Homo sapiens OX=9606 GN=EEF2 PE=1 SV=4 1 72.4277 0.000422325 87.669 50.586 72.428 1 87.6689 0.000422325 87.669 1 72.4277 0.00281455 72.428 1 M KRGHVFEESQVAGTPMFVVKAYLPVNESFGF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPXXXXXXXXXXX GHVFEESQVAGTPM(1)FVVK GHVFEESQVAGTPM(72.43)FVVK 14 3 0.72842 11023000 11023000 0 0 1.6252 0 0 0 0 2771800 0 0 8251000 0 NaN NaN NaN NaN NaN NaN NaN 2.1515 0 0 0 0 0 0 0 0 0 0 0 0 0 2771800 0 0 0 0 0 0 0 0 8251000 0 0 0 0 0 327 545 781 781 1522 1735 4886;4887 5139;5140;5141 4887 5141 20190902_JH_WT_Ubi_2 10341 4886 5139 20190902_JH_EV_Ubi_3 8593 4886 5139 20190902_JH_EV_Ubi_3 8593 sp|P13639|EF2_HUMAN 741 sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN Elongation factor 2 OS=Homo sapiens OX=9606 GN=EEF2 PE=1 SV=4 1 40.706 0.0215649 40.706 15.102 40.706 1 40.706 0.0215649 40.706 1 M RRCLYASVLTAQPRLMEPIYLVEIQCPEQVV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP LM(1)EPIYLVEIQCPEQVVGGIYGVLNR LM(40.71)EPIYLVEIQCPEQVVGGIYGVLNR 2 3 -2.8 3336100 3336100 0 0 NaN 0 0 3336100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3336100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 328 545 741 741 2716 3088 8812 9268 8812 9268 20190821_JH_WT_Ubi 15952 8812 9268 20190821_JH_WT_Ubi 15952 8812 9268 20190821_JH_WT_Ubi 15952 sp|P13639|EF2_HUMAN 22 sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN Elongation factor 2 OS=Homo sapiens OX=9606 GN=EEF2 PE=1 SV=4 1 63.0912 0.00723778 85.973 30.512 63.091 1 63.0912 0.0248484 63.091 1 85.9731 0.00723778 85.973 1 M DQIRAIMDKKANIRNMSVIAHVDHGKSTLTD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX NM(1)SVIAHVDHGK NM(63.09)SVIAHVDHGK 2 3 -0.024541 32899000 32899000 0 0 NaN 0 7496800 0 0 25403000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 7496800 0 0 0 0 0 0 0 0 25403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 329 545 22 22 3165 3618 10188;10189 10727;10728 10189 10728 20190821_JH_MUT_Ubi 2696 10188 10727 20190902_JH_EV_Ubi_3 3582 10188 10727 20190902_JH_EV_Ubi_3 3582 sp|P13639|EF2_HUMAN 494 sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN Elongation factor 2 OS=Homo sapiens OX=9606 GN=EEF2 PE=1 SV=4 1 59.5697 0.0224155 59.57 19.054 59.57 1 49.4481 0.0368095 49.448 1 55.2612 0.0281428 55.261 1 49.4231 0.0368552 49.423 1 51.2181 0.0335703 51.218 1 59.5697 0.0224155 59.57 1 M LVKTGTITTFEHAHNMRVMKFSVSPVVRVAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPXXXXXXXXXXXXXX TGTITTFEHAHNM(1)R TGTITTFEHAHNM(59.57)R 13 3 0.14561 88241000 88241000 0 0 4.8372 2901200 2083800 5700500 0 0 0 0 44300000 33255000 NaN NaN 0.93478 NaN NaN NaN NaN NaN 2.7385 2901200 0 0 2083800 0 0 5700500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44300000 0 0 33255000 0 0 330 545 494 494 4391 4983 13912;13913;13914;13915;13916 14602;14603;14604;14605;14606 13916 14606 20190902_JH_WT_Ubi_3 5146 13916 14606 20190902_JH_WT_Ubi_3 5146 13916 14606 20190902_JH_WT_Ubi_3 5146 sp|P13639|EF2_HUMAN 353 sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN sp|P13639|EF2_HUMAN Elongation factor 2 OS=Homo sapiens OX=9606 GN=EEF2 PE=1 SV=4 1 100.948 5.59639E-08 104.82 72.243 100.95 1 104.819 5.59639E-08 104.82 1 86.6248 1.51859E-05 86.625 1 74.6984 0.000304652 74.698 1 78.4006 0.000174868 78.401 1 93.7762 1.47631E-06 93.776 1 100.948 8.87401E-08 100.95 1 M AVMRRWLPAGDALLQMITIHLPSPVTAQKYR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPXX WLPAGDALLQM(1)ITIHLPSPVTAQK WLPAGDALLQM(100.95)ITIHLPSPVTAQK 11 3 -0.72042 225110000 225110000 0 0 6.3849 0 47060000 99022000 0 0 15906000 17309000 19688000 26125000 NaN 1.5122 NaN NaN NaN 12.65 NaN 6.8409 NaN 0 0 0 47060000 0 0 99022000 0 0 0 0 0 0 0 0 15906000 0 0 17309000 0 0 19688000 0 0 26125000 0 0 331 545 353 353 5094 5789 16433;16434;16435;16436;16437;16438 17270;17271;17272;17273;17274;17275 16438 17275 20190902_JH_WT_Ubi_3 15409 16433 17270 20190821_JH_MUT_Ubi 14168 16433 17270 20190821_JH_MUT_Ubi 14168 sp|P13667|PDIA4_HUMAN 373 sp|P13667|PDIA4_HUMAN sp|P13667|PDIA4_HUMAN sp|P13667|PDIA4_HUMAN Protein disulfide-isomerase A4 OS=Homo sapiens OX=9606 GN=PDIA4 PE=1 SV=2 1 75.9984 2.07949E-05 116.79 66.564 75.998 1 116.786 2.07949E-05 116.79 1 72.3155 0.00488685 72.315 1 75.9984 0.003046 75.998 2 M MQPEKFQSKYEPRSHMMDVQGSTQDSAIKDF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPXX SHM(1)M(1)DVQGSTQDSAIK SHM(76)M(76)DVQGSTQDSAIK 3 3 0.067081 8965200 0 8965200 0 NaN 0 0 1830000 0 0 0 0 2500500 4634800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1830000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2500500 0 0 4634800 0 332 546 373 373 3950 4493 12533;12534;12535 13147;13148;13149 12535 13149 20190902_JH_WT_Ubi_3 4723 12533 13147 20190821_JH_WT_Ubi 3549 12533 13147 20190821_JH_WT_Ubi 3549 sp|P13667|PDIA4_HUMAN 374 sp|P13667|PDIA4_HUMAN sp|P13667|PDIA4_HUMAN sp|P13667|PDIA4_HUMAN Protein disulfide-isomerase A4 OS=Homo sapiens OX=9606 GN=PDIA4 PE=1 SV=2 1 75.9984 2.07949E-05 116.79 66.564 75.998 1 116.786 2.07949E-05 116.79 1 72.3155 0.00488685 72.315 1 75.9984 0.003046 75.998 2 M QPEKFQSKYEPRSHMMDVQGSTQDSAIKDFV X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX SHM(1)M(1)DVQGSTQDSAIK SHM(76)M(76)DVQGSTQDSAIK 4 3 0.067081 8965200 0 8965200 0 NaN 0 0 1830000 0 0 0 0 2500500 4634800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1830000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2500500 0 0 4634800 0 333 546 374 374 3950 4493 12533;12534;12535 13147;13148;13149 12535 13149 20190902_JH_WT_Ubi_3 4723 12533 13147 20190821_JH_WT_Ubi 3549 12533 13147 20190821_JH_WT_Ubi 3549 sp|P13804-2|ETFA_HUMAN;sp|P13804|ETFA_HUMAN 241;290 sp|P13804-2|ETFA_HUMAN sp|P13804-2|ETFA_HUMAN sp|P13804-2|ETFA_HUMAN Isoform 2 of Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ETFA;sp|P13804|ETFA_HUMAN Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ETFA PE=1 SV=1 1 68.6393 0.00133222 68.639 46.418 68.639 1 68.6393 0.00133222 68.639 1 M YIAVGISGAIQHLAGMKDSKTIVAINKDPEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX IVAPELYIAVGISGAIQHLAGM(1)K IVAPELYIAVGISGAIQHLAGM(68.64)K 22 3 -0.80365 5089300 5089300 0 0 NaN 0 5089300 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 5089300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334 548 241 241 2286 2603 7519 7906 7519 7906 20190821_JH_MUT_Ubi 14636 7519 7906 20190821_JH_MUT_Ubi 14636 7519 7906 20190821_JH_MUT_Ubi 14636 sp|Q5VT79|AXA81_HUMAN;sp|P13928|ANXA8_HUMAN;sp|P13928-3|ANXA8_HUMAN 244;244;182 sp|Q5VT79|AXA81_HUMAN sp|Q5VT79|AXA81_HUMAN sp|Q5VT79|AXA81_HUMAN Annexin A8-like protein 1 OS=Homo sapiens OX=9606 GN=ANXA8L1 PE=2 SV=2;sp|P13928|ANXA8_HUMAN Annexin A8 OS=Homo sapiens OX=9606 GN=ANXA8 PE=1 SV=3;sp|P13928-3|ANXA8_HUMAN Isoform 3 of Annexin A8 OS=Homo sapiens OX=9606 GN=ANXA8 1 87.5658 0.00238084 87.566 42.426 87.566 1 81.1854 0.00238084 81.185 1 80.6319 0.00247862 80.632 1 87.5658 0.00324355 87.566 1 M EDSIKSETHGSLEEAMLTVVKCTQNLHSYFA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX SETHGSLEEAM(1)LTVVK SETHGSLEEAM(87.57)LTVVK 11 3 0.23982 2017300 2017300 0 0 NaN 384610 0 1632700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 384610 0 0 0 0 0 1632700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335 550 244 244 3901 4429 12344;12345;12346 12943;12944;12945 12346 12945 20190902_JH_WT_Ubi_3 8129 12346 12945 20190902_JH_WT_Ubi_3 8129 12344 12943 20190821_JH_EV_Ubi 6646 sp|P14174|MIF_HUMAN 3 sp|P14174|MIF_HUMAN sp|P14174|MIF_HUMAN sp|P14174|MIF_HUMAN Macrophage migration inhibitory factor OS=Homo sapiens OX=9606 GN=MIF PE=1 SV=4 1 110.387 0.00128906 110.39 63.543 110.39 1 96.3311 0.00388369 96.331 1 105.396 0.00255615 105.4 1 91.5493 0.00718963 91.549 1 98.0402 0.00420787 98.04 1 63.4082 0.0268097 63.408 1 110.387 0.00128906 110.39 1 M _____________MPMFIVNTNVPRASVPDG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX PM(1)FIVNTNVPR PM(110.39)FIVNTNVPR 2 3 -0.24677 27697000 27697000 0 0 NaN 0 0 875010 2517000 1830300 0 1408200 2339500 2157800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 875010 0 0 2517000 0 0 1830300 0 0 0 0 0 1408200 0 0 2339500 0 0 2157800 0 0 336 551 3 3 3460 3946 11101;11102;11103;11104;11105;11106;11107;11108 11666;11667;11668;11669;11670;11671;11672;11673 11108 11673 20190902_JH_WT_Ubi_3 9838 11108 11673 20190902_JH_WT_Ubi_3 9838 11108 11673 20190902_JH_WT_Ubi_3 9838 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 360;360;345 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 76.5568 2.43963E-53 190.61 145.85 76.557 1 106.722 3.81796E-10 106.72 1 109.051 9.69591E-20 135.3 1 76.5568 2.43963E-53 190.61 1 161.464 6.35934E-34 161.46 1 113.605 3.98023E-12 113.6 1 105.706 4.6736E-10 105.71 1 70.5932 0.000629336 70.593 1 185.337 5.35832E-53 185.34 1 190.607 2.43963E-53 190.61 1 M GSDVANAVLDGADCIMLSGETAKGDYPLEAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP AEGSDVANAVLDGADCIM(1)LSGETAKGDYPLEAVR AEGSDVANAVLDGADCIM(76.56)LSGETAKGDYPLEAVR 18 3 1.7147 90583000 90583000 0 0 1.0819 3389200 1500400 27778000 1894000 1642200 1517300 1461500 20950000 26835000 0.94057 0.92927 0.653 2.8722 2.4138 1.0949 1.0237 1.5333 1.4785 3389200 0 0 1500400 0 0 27778000 0 0 1894000 0 0 1642200 0 0 1517300 0 0 1461500 0 0 20950000 0 0 26835000 0 0 337 556 360 360 89;90 102;104 318;319;320;321;322;323;324;325;326;336;337 347;348;349;350;351;352;353;354;355;356;369;370 337 370 20190821_JH_WT_Ubi 12775 326 356 20190902_JH_WT_Ubi_3 13250 326 356 20190902_JH_WT_Ubi_3 13250 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 330;330;315 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 70.8885 0.0012802 89.231 64.955 70.889 1 53.9462 0.014499 53.946 1 44.2463 0.0237807 44.246 1 50.6591 0.0170635 50.659 1 65.2985 0.00515665 89.231 1 79.3174 0.0012802 79.317 1 70.8885 0.00466632 70.889 1;2 M GRCNRAGKPVICATQMLESMIKKPRPTRAEG X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPXXXXXXXX PVICATQM(1)LESM(1)IKK PVICATQM(70.89)LESM(70.89)IKK 8 3 -0.34977 74044000 4560600 69483000 0 30.019 4744600 9005600 29638000 0 0 4560600 0 20694000 0 NaN 5.5396 NaN NaN NaN NaN 0 NaN NaN 0 4744600 0 0 9005600 0 0 29638000 0 0 0 0 0 0 0 4560600 0 0 0 0 0 0 20694000 0 0 0 0 338 556 330 330 128;3552;3553 145;4049;4050 449;450;11412;11413;11414;11415;11416 497;498;11985;11986;11987;11988;11989 11416 11989 20190902_JH_WT_Ubi_2 8874 11412 11985 20190902_JH_MUT_Ubi_2 12098 450 498 20190902_JH_MUT_Ubi_3 8237 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 334;334;319 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 70.8885 0.0012802 79.317 26.817 70.889 1 53.9462 0.014499 53.946 1 44.2463 0.0237807 44.246 1 50.6591 0.0170635 50.659 1 65.2985 0.00515665 65.298 1 79.3174 0.0012802 79.317 1 70.8885 0.00466632 70.889 2 M RAGKPVICATQMLESMIKKPRPTRAEGSDVA X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX PVICATQM(1)LESM(1)IKK PVICATQM(70.89)LESM(70.89)IKK 12 3 -0.34977 69483000 0 69483000 0 28.17 4744600 9005600 29638000 0 0 0 0 20694000 0 NaN 5.5396 NaN NaN NaN NaN 0 NaN NaN 0 4744600 0 0 9005600 0 0 29638000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20694000 0 0 0 0 339 556 334 334 128;3552;3553 145;4049;4050 449;450;11413;11414;11415;11416 497;498;11986;11987;11988;11989 11416 11989 20190902_JH_WT_Ubi_2 8874 450 498 20190902_JH_MUT_Ubi_3 8237 450 498 20190902_JH_MUT_Ubi_3 8237 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN 64;64 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 61.7646 0.0195621 61.765 20.684 61.765 1 60.167 0.0213129 60.167 1 61.7646 0.0195621 61.765 2 M CTIGPASRSVETLKEMIKSGMNVARLNFSHG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX EM(1)IKSGM(1)NVAR EM(61.76)IKSGM(61.76)NVAR 2 3 1.0448 1298000 0 1298000 0 NaN 0 0 0 0 0 868770 429270 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 868770 0 0 429270 0 0 0 0 0 0 0 340 556 64 64 1035 1165 3284;3285 3452;3453 3285 3453 20190902_JH_MUT_Ubi_3 3676 3285 3453 20190902_JH_MUT_Ubi_3 3676 3285 3453 20190902_JH_MUT_Ubi_3 3676 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN 69;69 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 61.7646 0.0195621 61.765 20.684 61.765 1 60.167 0.0213129 60.167 1 61.7646 0.0195621 61.765 2 M ASRSVETLKEMIKSGMNVARLNFSHGTHEYH X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPXXXXXXXXXXX EM(1)IKSGM(1)NVAR EM(61.76)IKSGM(61.76)NVAR 7 3 1.0448 1298000 0 1298000 0 NaN 0 0 0 0 0 868770 429270 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 868770 0 0 429270 0 0 0 0 0 0 0 341 556 69 69 1035 1165 3284;3285 3452;3453 3285 3453 20190902_JH_MUT_Ubi_3 3676 3285 3453 20190902_JH_MUT_Ubi_3 3676 3285 3453 20190902_JH_MUT_Ubi_3 3676 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 239;239;224 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 141.061 6.45554E-14 155.37 108.69 141.06 1 106.603 0.000195271 106.6 1 117.484 2.00728E-05 117.48 1 93.1063 0.000885094 93.106 1 111.699 4.02672E-05 111.7 1 122.958 9.67004E-07 122.96 1 155.374 6.45554E-14 155.37 1 141.061 5.37055E-10 141.06 1 M KDIQDLKFGVEQDVDMVFASFIRKASDVHEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPXXXXXXXX FGVEQDVDM(1)VFASFIR FGVEQDVDM(141.06)VFASFIR 9 3 -0.80999 35545000 35545000 0 0 4.2244 0 2189500 12783000 507410 0 1418800 1568100 12158000 4919700 NaN 2.3483 1.7085 NaN NaN NaN NaN NaN NaN 0 0 0 2189500 0 0 12783000 0 0 507410 0 0 0 0 0 1418800 0 0 1568100 0 0 12158000 0 0 4919700 0 0 342 556 239 239 1213 1368 3847;3848;3849;3850;3851;3852;3853 4049;4050;4051;4052;4053;4054;4055 3853 4055 20190902_JH_WT_Ubi_3 15761 3852 4054 20190902_JH_WT_Ubi_2 16365 3852 4054 20190902_JH_WT_Ubi_2 16365 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 525;525;510 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 45.844 4.91803E-06 97.384 77.564 45.844 1 50.3582 2.81295E-05 93.753 1 47.499 2.81295E-05 93.753 1 50.9562 0.000947735 80.459 1 97.3835 4.91803E-06 97.384 1 42.9036 5.35131E-05 87.668 1 45.844 0.00705138 58.427 1 M IVLTGWRPGSGFTNTMRVVPVP_________ X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX KGDVVIVLTGWRPGSGFTNTM(1)R KGDVVIVLTGWRPGSGFTNTM(45.84)R 21 4 1.3665 762300000 762300000 0 0 7.6282 0 16622000 77247000 0 0 12086000 9114200 17264000 21526000 NaN 1.1029 1.4888 NaN NaN 0.71618 NaN NaN 1.3371 0 0 0 16622000 0 0 77247000 0 0 0 0 0 0 0 0 12086000 0 0 9114200 0 0 17264000 0 0 21526000 0 0 343 556 525 525 1416;2349 1612;1614;2669;2672 4507;4508;4509;4510;4511;4512;4515;7729;7730;7731;7732;7733;7734;7735;7739 4733;4734;4735;4736;4737;4738;4739;4742;8129;8130;8131;8132;8133;8134;8135;8136;8140 7739 8140 20190902_JH_WT_Ubi_3 11825 7732 8133 20190902_JH_MUT_Ubi_3 9978 7732 8133 20190902_JH_MUT_Ubi_3 9978 sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN 149;149;134 sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4;sp|P14618-2|KPYM_HUMAN Isoform M1 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM;sp|P14618-3|KPYM_HUMAN Isoform 3 of Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM 1 57.1708 0.0178172 57.171 36.514 57.171 1 57.1708 0.0178172 57.171 1 M LKKGATLKITLDNAYMEKCDENILWLDYKNI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPXX ITLDNAYM(1)EKCDENILWLDYK ITLDNAYM(57.17)EKCDENILWLDYK 8 3 2.4493 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344 556 149 149 2276 2589 7462 7843 7462 7843 20190902_JH_WT_Ubi_2 13532 7462 7843 20190902_JH_WT_Ubi_2 13532 7462 7843 20190902_JH_WT_Ubi_2 13532 sp|P14625|ENPL_HUMAN 154 sp|P14625|ENPL_HUMAN sp|P14625|ENPL_HUMAN sp|P14625|ENPL_HUMAN Endoplasmin OS=Homo sapiens OX=9606 GN=HSP90B1 PE=1 SV=1 1 193.45 2.26703E-60 225.33 179.34 193.45 1 225.334 2.26703E-60 225.33 1 159.178 9.2003E-15 159.18 1 91.7115 0.00207672 91.712 1 214.479 6.30483E-48 214.48 1 201.305 6.96671E-37 201.3 1 138.306 3.01407E-07 138.31 1 113.253 0.000169011 113.25 1 193.45 1.88199E-28 193.45 1 M DKEKNLLHVTDTGVGMTREELVKNLGTIAKS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPXXXXXXXXXXXXX NLLHVTDTGVGM(1)TR NLLHVTDTGVGM(193.45)TR 12 3 -1.5724 114720000 114720000 0 0 38.851 9887800 1749800 27816000 11544000 9309400 4338700 3186800 46886000 0 4.9697 NaN NaN NaN NaN 4.5045 NaN NaN NaN 9887800 0 0 1749800 0 0 27816000 0 0 11544000 0 0 9309400 0 0 4338700 0 0 3186800 0 0 46886000 0 0 0 0 0 345 557 154 154 3136 3583 10076;10077;10078;10079;10080;10081;10082;10083 10613;10614;10615;10616;10617;10618;10619;10620 10083 10620 20190902_JH_WT_Ubi_2 8130 10076 10613 20190821_JH_EV_Ubi 6234 10076 10613 20190821_JH_EV_Ubi 6234 sp|P14678-2|RSMB_HUMAN;sp|P63162|RSMN_HUMAN;sp|P14678|RSMB_HUMAN;sp|P63162-2|RSMN_HUMAN;sp|P14678-3|RSMB_HUMAN 80;80;80;84;80 sp|P14678-2|RSMB_HUMAN sp|P14678-2|RSMB_HUMAN sp|P14678-2|RSMB_HUMAN Isoform SM-B of Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB;sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1;sp|P14 1 97.9996 0.00190224 98 52.977 98 1 97.9996 0.00190224 98 1 M RVLGLVLLRGENLVSMTVEGPPPKDTGIARV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPXXXXXXX GENLVSM(1)TVEGPPPK GENLVSM(98)TVEGPPPK 7 2 -4.0747 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 346 558 80 80 1441 1641 4581 4814 4581 4814 20190821_JH_EV_Ubi 7103 4581 4814 20190821_JH_EV_Ubi 7103 4581 4814 20190821_JH_EV_Ubi 7103 sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN 460;327 sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2;sp|P14866-2|HNRPL_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL 1 44.7119 0.0189067 44.712 14.967 44.712 1 44.7119 0.0189067 44.712 1 M FGQKLNVCVSKQPAIMPGQSYGLEDGSCSYK X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPP LNVCVSKQPAIM(1)PGQSYGLEDGSCSYK LNVCVSKQPAIM(44.71)PGQSYGLEDGSCSYK 12 3 -1.2379 1237400 1237400 0 0 NaN 0 0 0 0 0 0 1237400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1237400 0 0 0 0 0 0 0 0 347 559 460 460 2741 3115 8886 9346 8886 9346 20190902_JH_MUT_Ubi_3 8945 8886 9346 20190902_JH_MUT_Ubi_3 8945 8886 9346 20190902_JH_MUT_Ubi_3 8945 sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN 423;290 sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2;sp|P14866-2|HNRPL_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL 1 114.721 1.82977E-05 114.72 82.197 114.72 1 114.721 1.82977E-05 114.72 2 M NVEKVKFMKSKPGAAMVEMADGYAVDRAITH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPXXXX PGAAM(1)VEM(1)ADGYAVDR PGAAM(114.72)VEM(114.72)ADGYAVDR 5 2 3.2632 2732500 0 2732500 0 NaN 0 0 0 0 0 0 0 0 2732500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2732500 0 348 559 423 423 3341 3814 10697 11256 10697 11256 20190902_JH_WT_Ubi_3 7854 10697 11256 20190902_JH_WT_Ubi_3 7854 10697 11256 20190902_JH_WT_Ubi_3 7854 sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN 426;293 sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2;sp|P14866-2|HNRPL_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL 1 114.721 1.82977E-05 114.72 82.197 114.72 1 114.721 1.82977E-05 114.72 2 M KVKFMKSKPGAAMVEMADGYAVDRAITHLNN X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPXXXXXXX PGAAM(1)VEM(1)ADGYAVDR PGAAM(114.72)VEM(114.72)ADGYAVDR 8 2 3.2632 2732500 0 2732500 0 NaN 0 0 0 0 0 0 0 0 2732500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2732500 0 349 559 426 426 3341 3814 10697 11256 10697 11256 20190902_JH_WT_Ubi_3 7854 10697 11256 20190902_JH_WT_Ubi_3 7854 10697 11256 20190902_JH_WT_Ubi_3 7854 sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN 567;434 sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2;sp|P14866-2|HNRPL_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL 1 53.001 0.00232633 81.494 46.488 53.001 1 81.4939 0.00232633 81.494 1 56.1392 0.01959 56.139 1 53.8685 0.0223223 53.869 1 53.001 0.0233661 53.001 1 M KSDALETLGFLNHYQMKNPNGPYPYTLKLCF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SDALETLGFLNHYQM(1)K SDALETLGFLNHYQM(53)K 15 3 -0.14914 10854000 10854000 0 0 NaN 0 0 4976700 0 0 862600 0 2513100 2502000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4976700 0 0 0 0 0 0 0 0 862600 0 0 0 0 0 2513100 0 0 2502000 0 0 350 559 567 567 3845 4367 12184;12185;12186;12187 12778;12779;12780;12781 12187 12781 20190902_JH_WT_Ubi_3 12043 12185 12779 20190821_JH_WT_Ubi 10686 12185 12779 20190821_JH_WT_Ubi 10686 sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN 385;252 sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2;sp|P14866-2|HNRPL_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL 1 46.5571 0.00226216 46.557 11.237 46.557 1 46.5571 0.00226216 46.557 1 M PPPPEYGPHADSPVLMVYGLDQSKMNCDRVF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX YGPQYGHPPPPPPPPEYGPHADSPVLM(1)VYGLDQSK YGPQYGHPPPPPPPPEYGPHADSPVLM(46.56)VYGLDQSK 27 4 -1.045 1704300 1704300 0 0 0.39835 0 0 0 0 0 0 0 0 1704300 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1704300 0 0 351 559 385 385 5148 5855 16608 17456 16608 17456 20190902_JH_WT_Ubi_3 11507 16608 17456 20190902_JH_WT_Ubi_3 11507 16608 17456 20190902_JH_WT_Ubi_3 11507 sp|P15121|ALDR_HUMAN 169 sp|P15121|ALDR_HUMAN sp|P15121|ALDR_HUMAN sp|P15121|ALDR_HUMAN Aldose reductase OS=Homo sapiens OX=9606 GN=AKR1B1 PE=1 SV=3 1 103.391 7.31251E-06 112.57 76.7 103.39 1 42.8179 0.0357528 42.818 1 112.572 7.31251E-06 112.57 1 102.361 0.000101438 102.36 1 103.391 9.05645E-05 103.39 1 M VKAIGISNFNHLQVEMILNKPGLKYKPAVNQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPXXXXXXXXXXX AIGISNFNHLQVEM(1)ILNK AIGISNFNHLQVEM(103.39)ILNK 14 3 0.21579 154630000 154630000 0 0 36.311 0 2671600 72692000 0 0 0 0 38608000 40662000 NaN NaN 17.07 NaN NaN NaN NaN NaN NaN 0 0 0 2671600 0 0 72692000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38608000 0 0 40662000 0 0 352 563 169 169 163 187 554;555;556;557 605;606;607;608 557 608 20190902_JH_WT_Ubi_3 12163 555 606 20190821_JH_WT_Ubi 10870 555 606 20190821_JH_WT_Ubi 10870 sp|P15121|ALDR_HUMAN 286 sp|P15121|ALDR_HUMAN sp|P15121|ALDR_HUMAN sp|P15121|ALDR_HUMAN Aldose reductase OS=Homo sapiens OX=9606 GN=AKR1B1 PE=1 SV=3 1 86.0161 4.29644E-05 104.78 74.291 86.016 1 104.78 4.29644E-05 104.78 1 43.2605 0.0330168 43.261 1 86.0161 0.000346661 86.016 1 M AENFKVFDFELSSQDMTTLLSYNRNWRVCAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX VFDFELSSQDM(1)TTLLSYNR VFDFELSSQDM(86.02)TTLLSYNR 11 3 -0.61145 6954800 6954800 0 0 NaN 0 0 3410300 0 0 0 0 1366000 2178500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3410300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1366000 0 0 2178500 0 0 353 563 286 286 4811 5459 15445;15446;15447 16223;16224;16225 15447 16225 20190902_JH_WT_Ubi_3 14518 15445 16223 20190821_JH_WT_Ubi 13854 15445 16223 20190821_JH_WT_Ubi 13854 sp|P15144|AMPN_HUMAN 249 sp|P15144|AMPN_HUMAN sp|P15144|AMPN_HUMAN sp|P15144|AMPN_HUMAN Aminopeptidase N OS=Homo sapiens OX=9606 GN=ANPEP PE=1 SV=4 1 157.345 0.000154289 157.34 80.027 157.34 1 157.345 0.000154289 157.34 M NITLIHPKDLTALSNMLPKGPSTPLPEDPNW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX DLTALSNM(1)LPK DLTALSNM(157.34)LPK 8 2 -2.0937 3214700 3214700 0 0 NaN 0 0 3214700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3214700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354 564 249 249 601 687 1877 1987 1877 1987 20190821_JH_WT_Ubi 10338 1877 1987 20190821_JH_WT_Ubi 10338 1877 1987 20190821_JH_WT_Ubi 10338 sp|P15144|AMPN_HUMAN 354 sp|P15144|AMPN_HUMAN sp|P15144|AMPN_HUMAN sp|P15144|AMPN_HUMAN Aminopeptidase N OS=Homo sapiens OX=9606 GN=ANPEP PE=1 SV=4 1 58.7117 0.00494028 58.712 34.817 58.712 1 58.7117 0.00494028 58.712 1 M PKSDQIGLPDFNAGAMENWGLVTYRENSLLF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPXXXXXX SDQIGLPDFNAGAM(1)ENWGLVTYR SDQIGLPDFNAGAM(58.71)ENWGLVTYR 14 3 0.6523 1905700 1905700 0 0 NaN 0 0 1905700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1905700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 355 564 354 354 3858 4381 12222 12817 12222 12817 20190821_JH_WT_Ubi 14703 12222 12817 20190821_JH_WT_Ubi 14703 12222 12817 20190821_JH_WT_Ubi 14703 sp|P15311|EZRI_HUMAN;sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-4|RADI_HUMAN 305;305;305;305;169 sp|P15311|EZRI_HUMAN;sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN sp|P26038|MOES_HUMAN sp|P15311|EZRI_HUMAN Ezrin OS=Homo sapiens OX=9606 GN=EZR PE=1 SV=4;sp|P26038|MOES_HUMAN Moesin OS=Homo sapiens OX=9606 GN=MSN PE=1 SV=3;sp|P35241|RADI_HUMAN Radixin OS=Homo sapiens OX=9606 GN=RDX PE=1 SV=1;sp|P35241-5|RADI_HUMAN Isoform 5 of Radixin OS=Ho 1 89.1361 0.00194648 103.3 48.698 89.136 1 103.296 0.00194648 103.3 1 89.1361 0.005901 89.136 1 M LYMRRRKPDTIEVQQMKAQAREEKHQKQLER;LYMRRRKPDTIEVQQMKAQAREEKHQKQMER X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX KPDTIEVQQM(1)KAQAR KPDTIEVQQM(89.14)KAQAR 10 3 0.58365 1896200 1896200 0 0 NaN 0 0 0 0 0 1163600 0 732640 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1163600 0 0 0 0 0 732640 0 0 0 0 0 356 568;686;773 305;305;305 305 2415 2746 7897;7898 8307;8308 7898 8308 20190902_JH_WT_Ubi_2 4952 7897 8307 20190902_JH_MUT_Ubi_2 4274 7897 8307 20190902_JH_MUT_Ubi_2 4274 sp|P15311|EZRI_HUMAN;sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN 12;12;12;12;12 sp|P15311|EZRI_HUMAN;sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN sp|P26038|MOES_HUMAN sp|P15311|EZRI_HUMAN Ezrin OS=Homo sapiens OX=9606 GN=EZR PE=1 SV=4;sp|P26038|MOES_HUMAN Moesin OS=Homo sapiens OX=9606 GN=MSN PE=1 SV=3;sp|P35241|RADI_HUMAN Radixin OS=Homo sapiens OX=9606 GN=RDX PE=1 SV=1;sp|P35241-5|RADI_HUMAN Isoform 5 of Radixin OS=Ho 1 52.5198 0.000206085 104.17 57.686 52.52 1 46.543 0.0264764 46.543 1 104.167 0.000206085 104.17 1 52.5198 0.0158014 52.52 1 M ____MPKPINVRVTTMDAELEFAIQPNTTGK;____MPKTISVRVTTMDAELEFAIQPNTTGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP VTTM(1)DAELEFAIQPNTTGK VTTM(52.52)DAELEFAIQPNTTGK 4 3 -0.4576 4981400 4981400 0 0 NaN 1279800 0 0 0 0 0 0 2473800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1279800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2473800 0 0 0 0 0 357 568;686;773 12;12;12 12 5040 5725 16263;16264;16265 17094;17095;17096 16265 17096 20190902_JH_WT_Ubi_2 12249 16264 17095 20190821_JH_MUT_Ubi 9937 16264 17095 20190821_JH_MUT_Ubi 9937 sp|P21281|VATB2_HUMAN;sp|P15313|VATB1_HUMAN 300;294 sp|P21281|VATB2_HUMAN sp|P21281|VATB2_HUMAN sp|P21281|VATB2_HUMAN V-type proton ATPase subunit B, brain isoform OS=Homo sapiens OX=9606 GN=ATP6V1B2 PE=1 SV=3;sp|P15313|VATB1_HUMAN V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens OX=9606 GN=ATP6V1B1 PE=1 SV=3 1 141.061 2.80394E-10 141.06 109.67 141.06 1 50.0528 0.0245634 50.053 1 135.466 5.39401E-10 135.47 1 111.808 2.33905E-05 111.81 1 141.061 2.80394E-10 141.06 1 M LAYQCEKHVLVILTDMSSYAEALREVSAARE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPXXXXXXX HVLVILTDM(1)SSYAEALR HVLVILTDM(141.06)SSYAEALR 9 3 1.5574 10241000 10241000 0 0 6.6858 1051500 0 3104100 0 0 0 0 2711200 3374400 NaN NaN 2.0265 NaN NaN NaN NaN NaN NaN 1051500 0 0 0 0 0 3104100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2711200 0 0 3374400 0 0 358 569 300 300 2028 2313 6675;6676;6677;6678 7023;7024;7025;7026 6678 7026 20190902_JH_WT_Ubi_3 11886 6678 7026 20190902_JH_WT_Ubi_3 11886 6678 7026 20190902_JH_WT_Ubi_3 11886 sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN 90;115;90;90;75 sp|P15531|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1 PE=1 SV=1;sp|P15531-2|NDKA_HUMAN Isoform 2 of Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1;sp|P22392-2|NDKB_HUMAN Isoform 3 of Nucleoside diphosphate ki 1 89.5016 3.61125E-08 132.81 96.18 89.502 1 65.943 0.0105982 65.943 1 63.6807 0.0123119 63.681 1 74.7258 0.00394487 74.726 1 132.811 3.61125E-08 132.81 1 105.527 0.000210222 105.53 1 99.9146 0.000383558 99.915 1 89.5016 0.00107142 89.502 1 M AMVWEGLNVVKTGRVMLGETNPADSKPGTIR X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)LGETNPADSKPGTIR VM(89.5)LGETNPADSKPGTIR 2 3 0.18744 47841000 47841000 0 0 NaN 2172400 4956500 5370300 0 0 5564200 8176100 9418000 12184000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2172400 0 0 4956500 0 0 5370300 0 0 0 0 0 0 0 0 5564200 0 0 8176100 0 0 9418000 0 0 12184000 0 0 359 573;652 90;90 90 4943 5613 15883;15884;15885;15886;15887;15888;15889 16689;16690;16691;16692;16693;16694;16695;16696 15889 16696 20190902_JH_WT_Ubi_3 7260 15885 16692 20190902_JH_MUT_Ubi_2 6436 15885 16692 20190902_JH_MUT_Ubi_2 6436 sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN 68;93;68 sp|P15531|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1 PE=1 SV=1;sp|P15531-2|NDKA_HUMAN Isoform 2 of Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1;sp|P22392-2|NDKB_HUMAN Isoform 3 of Nucleoside diphosphate ki 1 127.834 7.7055E-18 147.64 86.721 127.83 1 118.547 1.05356E-06 119.96 1 147.639 7.7055E-18 147.64 1 114.013 2.76416E-06 114.01 1 138.905 2.48014E-13 138.91 1 138.905 2.48014E-13 138.91 1 127.834 4.6687E-09 127.83 1;2 M VDLKDRPFFAGLVKYMHSGPVVAMVWEGLNV X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP YM(1)HSGPVVAM(1)VWEGLNVVK YM(127.83)HSGPVVAM(127.83)VWEGLNVVK 2 3 -1.0357 109830000 50224000 59607000 0 8.524 0 13034000 45222000 0 0 6079400 9411700 13869000 22215000 NaN 4.4089 4.8969 NaN NaN 8.7626 NaN NaN NaN 0 0 0 6852800 6181200 0 27219000 18002000 0 0 0 0 0 0 0 2054300 4025100 0 2412900 6998800 0 3749000 10120000 0 7935400 14280000 0 360 573;652 68;68 68 5175 5887;5888 16686;16687;16688;16689;16690;16691;16693;16695;16697;16699;16701;16703 17538;17539;17540;17541;17542;17543;17544;17547;17549;17551;17553;17555;17556;17558 16691 17544 20190902_JH_WT_Ubi_3 12072 16689 17541 20190821_JH_WT_Ubi 10789 16689 17541 20190821_JH_WT_Ubi 10789 sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN 76;101;76 sp|P15531|NDKA_HUMAN;sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1 PE=1 SV=1;sp|P15531-2|NDKA_HUMAN Isoform 2 of Nucleoside diphosphate kinase A OS=Homo sapiens OX=9606 GN=NME1;sp|P22392-2|NDKB_HUMAN Isoform 3 of Nucleoside diphosphate ki 1 127.834 7.7055E-18 147.64 86.721 127.83 1 118.547 1.39904E-06 118.55 1 147.639 7.7055E-18 147.64 1 114.013 2.76416E-06 114.01 1 138.905 2.48014E-13 138.91 1 138.905 2.48014E-13 138.91 1 127.834 4.6687E-09 127.83 1;2 M FAGLVKYMHSGPVVAMVWEGLNVVKTGRVML X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X XXXXXXPPPPPPPPPPPPPPPPPPPXXXXXX YM(1)HSGPVVAM(1)VWEGLNVVK YM(127.83)HSGPVVAM(127.83)VWEGLNVVK 10 3 -1.0357 75320000 15713000 59607000 0 5.8457 0 7938200 24846000 0 0 5857700 8115300 12182000 16381000 NaN 2.6852 2.6905 NaN NaN 8.443 NaN NaN NaN 0 0 0 1757000 6181200 0 6843500 18002000 0 0 0 0 0 0 0 1832600 4025100 0 1116500 6998800 0 2062300 10120000 0 2101200 14280000 0 361 573;652 76;76 76 5175 5887;5888 16686;16687;16688;16689;16690;16691;16692;16694;16696;16698;16700;16702 17538;17539;17540;17541;17542;17543;17544;17545;17546;17548;17550;17552;17554;17557 16691 17544 20190902_JH_WT_Ubi_3 12072 16689 17541 20190821_JH_WT_Ubi 10789 16689 17541 20190821_JH_WT_Ubi 10789 sp|P15880|RS2_HUMAN 61 sp|P15880|RS2_HUMAN sp|P15880|RS2_HUMAN sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens OX=9606 GN=RPS2 PE=1 SV=2 1 64.8406 0.00328103 105.65 26.685 64.841 1 72.0892 0.0258163 72.089 1 86.9106 0.0133185 86.911 1 80.6901 0.0175548 80.69 1 75.4785 0.0211039 75.479 1 89.8046 0.0114117 89.805 1 64.8406 0.00658475 97.163 1 83.6173 0.0155613 83.617 1 81.4315 0.0170499 81.431 1 105.649 0.00328103 105.65 1 M RGRGARGGKAEDKEWMPVTKLGRLVKDMKIK X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPXXXXXXXX EWM(1)PVTKLGR EWM(64.84)PVTKLGR 3 3 0.47325 35121000 35121000 0 0 3.8037 967890 1344200 4800800 1163800 2273900 2418300 2749800 6608200 12794000 NaN 2.0881 NaN NaN NaN 2.0997 NaN NaN 1.7201 967890 0 0 1344200 0 0 4800800 0 0 1163800 0 0 2273900 0 0 2418300 0 0 2749800 0 0 6608200 0 0 12794000 0 0 362 576 61 61 80;1157 91;1305 280;281;282;283;284;285;286;287;288;3685 298;299;300;301;302;303;304;305;306;3879 3685 3879 20190902_JH_MUT_Ubi_2 7077 288 306 20190902_JH_WT_Ubi_3 6144 288 306 20190902_JH_WT_Ubi_3 6144 sp|P15941-12|MUC1_HUMAN;sp|P15941-16|MUC1_HUMAN;sp|P15941-9|MUC1_HUMAN;sp|P15941-10|MUC1_HUMAN;sp|P15941-15|MUC1_HUMAN;sp|P15941-6|MUC1_HUMAN;sp|P15941-7|MUC1_HUMAN;sp|P15941-11|MUC1_HUMAN;sp|P15941-8|MUC1_HUMAN;sp|P15941-4|MUC1_HUMAN;sp|P15941-3|MUC1_HUMAN;sp|P15941|MUC1_HUMAN;sp|P15941-2|MUC1_HUMAN;sp|P15941-17|MUC1_HUMAN 110;117;119;154;175;181;206;215;224;1194;1203;1206;1215;215 sp|P15941-12|MUC1_HUMAN sp|P15941-12|MUC1_HUMAN sp|P15941-12|MUC1_HUMAN Isoform S2 of Mucin-1 OS=Homo sapiens OX=9606 GN=MUC1;sp|P15941-16|MUC1_HUMAN Isoform E2 of Mucin-1 OS=Homo sapiens OX=9606 GN=MUC1;sp|P15941-9|MUC1_HUMAN Isoform 9 of Mucin-1 OS=Homo sapiens OX=9606 GN=MUC1;sp|P15941-10|MUC1_HUMAN 1 41.3778 0.023611 47.639 29.549 41.378 1 44.807 0.0280413 44.807 1 47.6391 0.023611 47.639 1 42.682 0.0313654 42.682 1 41.3778 0.0334057 41.378 1 M YGQLDIFPARDTYHPMSEYPTYHTHGRYVPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPXXXX DTYHPM(1)SEYPTYHTHGR DTYHPM(41.38)SEYPTYHTHGR 6 4 -0.30626 18895000 18895000 0 0 NaN 0 0 0 3849400 1930800 0 0 7033500 6081400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 3849400 0 0 1930800 0 0 0 0 0 0 0 0 7033500 0 0 6081400 0 0 363 579 110 110 719 816 2251;2252;2253;2254 2378;2379;2380;2381 2254 2381 20190902_JH_WT_Ubi_3 5512 2252 2379 20190902_JH_EV_Ubi_3 4542 2252 2379 20190902_JH_EV_Ubi_3 4542 sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN 307;328;363;392;396;460;635;641;658;666;666;678;680;701;709 sp|P16070-18|CD44_HUMAN sp|P16070-18|CD44_HUMAN sp|P16070-18|CD44_HUMAN Isoform 18 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P16070-12|CD44_HUMAN Isoform 12 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P16070-14|CD44_HUMAN Isoform 14 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P160 1 83.3172 1.70154E-20 142.32 117.1 83.317 1 91.2017 6.61581E-07 91.202 1 50.4323 0.00352176 50.432 1 142.325 1.70154E-20 142.32 1 60.0903 0.010093 60.09 1 65.1965 0.000494099 65.197 1 50.4323 0.00352176 50.432 1 83.3172 3.93183E-07 93.633 1 119.43 5.74843E-13 119.43 1;2 M RKPSGLNGEASKSQEMVHLVNKESSETPDQF X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;GlyGly (K);X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Deamidation (NQ);X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP SQEM(1)VHLVNKESSETPDQFM(1)TADETR SQEM(83.32)VHLVNKESSETPDQFM(83.32)TADETR 4 3 4.3877 158030000 60523000 97506000 0 3.1773 0 3043600 24644000 4518900 16325000 0 5423200 50197000 50167000 0 1.3273 1.2984 NaN NaN 0 3.3652 4.1977 4.7809 0 0 0 790850 2252700 0 9332600 15311000 0 4518900 0 0 2316200 14009000 0 0 0 0 0 5423200 0 21197000 29000000 0 20821000 29345000 0 364 580 307 307 2433;4118 2766;4677;4679;4680 7958;7959;7960;7961;7962;7963;7964;13036;13037;13038;13039;13040;13041;13042;13043;13057 8369;8370;8371;8372;8373;8374;8375;13672;13673;13674;13675;13676;13677;13678;13679;13694 13057 13694 20190902_JH_WT_Ubi_2 8154 13041 13677 20190821_JH_WT_Ubi 6091 13041 13677 20190821_JH_WT_Ubi 6091 sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN 323;344;379;408;412;476;651;657;674;682;682;694;696;717;725 sp|P16070-18|CD44_HUMAN sp|P16070-18|CD44_HUMAN sp|P16070-18|CD44_HUMAN Isoform 18 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P16070-12|CD44_HUMAN Isoform 12 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P16070-14|CD44_HUMAN Isoform 14 of CD44 antigen OS=Homo sapiens OX=9606 GN=CD44;sp|P160 1 83.3172 1.70154E-20 142.32 117.1 83.317 1 91.2017 6.61581E-07 91.202 1 50.4323 0.00352176 50.432 1 142.325 1.70154E-20 142.32 0.999838 37.9029 0.00221623 57.829 1 65.1965 0.000494099 65.197 1 50.4323 0.00352176 50.432 1 83.3172 3.93183E-07 93.633 1 119.43 5.74843E-13 119.43 1;2 M VHLVNKESSETPDQFMTADETRNLQNVDMKI X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX SQEM(1)VHLVNKESSETPDQFM(1)TADETR SQEM(83.32)VHLVNKESSETPDQFM(83.32)TADETR 20 3 4.3877 138200000 40696000 97506000 0 4.9947 0 2252700 22289000 5108400 17345000 0 5423200 40089000 41198000 0 0.98244 2.0863 NaN NaN 0 3.3652 7.9484 11.326 0 0 0 0 2252700 0 6977700 15311000 0 5108400 0 0 3335600 14009000 0 0 0 0 0 5423200 0 11089000 29000000 0 11853000 29345000 0 365 580 323 323 4118 4677;4679;4680 13036;13037;13038;13039;13040;13041;13042;13043;13051;13052;13053;13054;13055;13056;13057 13672;13673;13674;13675;13676;13677;13678;13679;13687;13688;13689;13690;13691;13692;13693;13694 13057 13694 20190902_JH_WT_Ubi_2 8154 13041 13677 20190821_JH_WT_Ubi 6091 13041 13677 20190821_JH_WT_Ubi 6091 sp|P16152|CBR1_HUMAN 172 sp|P16152|CBR1_HUMAN sp|P16152|CBR1_HUMAN sp|P16152|CBR1_HUMAN Carbonyl reductase [NADPH] 1 OS=Homo sapiens OX=9606 GN=CBR1 PE=1 SV=3 1 142.097 3.09801E-07 142.1 82.898 142.1 1 142.097 3.09801E-07 142.1 1 M KFRSETITEEELVGLMNKFVEDTKKGVHQKE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPXXXXXXXXXXXXX SETITEEELVGLM(1)NK SETITEEELVGLM(142.1)NK 13 2 -2.2772 15415000 15415000 0 0 NaN 0 0 0 0 0 0 0 15415000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15415000 0 0 0 0 0 366 583 172 172 3902 4430 12347 12946 12347 12946 20190902_JH_WT_Ubi_2 11529 12347 12946 20190902_JH_WT_Ubi_2 11529 12347 12946 20190902_JH_WT_Ubi_2 11529 sp|P16930|FAAA_HUMAN 71 sp|P16930|FAAA_HUMAN sp|P16930|FAAA_HUMAN sp|P16930|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens OX=9606 GN=FAH PE=1 SV=2 1 77.9594 0.000308108 77.959 43.271 77.959 1 77.9594 0.000308108 77.959 1 M SKHQDVFNQPTLNSFMGLGQAAWKEARVFLQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPXXXXXXX HQDVFNQPTLNSFM(1)GLGQAAWK HQDVFNQPTLNSFM(77.96)GLGQAAWK 14 3 1.6349 1504800 1504800 0 0 NaN 0 0 0 0 0 0 0 0 1504800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1504800 0 0 367 592 71 71 1973 2245 6416 6751 6416 6751 20190902_JH_WT_Ubi_3 12734 6416 6751 20190902_JH_WT_Ubi_3 12734 6416 6751 20190902_JH_WT_Ubi_3 12734 sp|P17301|ITA2_HUMAN 986 sp|P17301|ITA2_HUMAN sp|P17301|ITA2_HUMAN sp|P17301|ITA2_HUMAN Integrin alpha-2 OS=Homo sapiens OX=9606 GN=ITGA2 PE=1 SV=1 1 47.0164 0.0198173 47.016 23.569 47.016 1 47.0164 0.0198173 47.016 1 M FIFSLKVTTGSVPVSMATVIIHIPQYTKEKN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPXXX VTTGSVPVSM(1)ATVIIHIPQYTK VTTGSVPVSM(47.02)ATVIIHIPQYTK 10 3 -0.1538 6774200 6774200 0 0 0.13823 0 0 0 6774200 0 0 0 0 0 NaN NaN 0 NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 6774200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368 599 986 986 5039 5723 16260 17091 16260 17091 20190902_JH_EV_Ubi_2 10301 16260 17091 20190902_JH_EV_Ubi_2 10301 16260 17091 20190902_JH_EV_Ubi_2 10301 sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN 326;248 sp|P17655|CAN2_HUMAN sp|P17655|CAN2_HUMAN sp|P17655|CAN2_HUMAN Calpain-2 catalytic subunit OS=Homo sapiens OX=9606 GN=CAPN2 PE=1 SV=6;sp|P17655-2|CAN2_HUMAN Isoform 2 of Calpain-2 catalytic subunit OS=Homo sapiens OX=9606 GN=CAPN2 1 90.7588 0.00157411 90.759 27.578 90.759 1 90.7588 0.00157411 90.759 1 M ERERLTRRHEDGEFWMSFSDFLRHYSRLEIC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX HEDGEFWM(1)SFSDFLR HEDGEFWM(90.76)SFSDFLR 8 3 -0.49256 1595700 1595700 0 0 NaN 0 0 0 0 0 0 0 1595700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1595700 0 0 0 0 0 369 602 326 326 1806 2049 5745 6049 5745 6049 20190902_JH_WT_Ubi_2 15349 5745 6049 20190902_JH_WT_Ubi_2 15349 5745 6049 20190902_JH_WT_Ubi_2 15349 sp|P17931|LEG3_HUMAN 130 sp|P17931|LEG3_HUMAN sp|P17931|LEG3_HUMAN sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens OX=9606 GN=LGALS3 PE=1 SV=5 1 118.757 0.000164775 118.76 79.097 118.76 1 91.202 0.00522397 91.202 1 118.757 0.000164775 118.76 1 M IVPYNLPLPGGVVPRMLITILGTVKPNANRI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)LITILGTVKPNANR M(118.76)LITILGTVKPNANR 1 3 -0.99816 9169200 9169200 0 0 4.2782 5715900 0 0 3453400 0 0 0 0 0 2.6669 NaN NaN NaN NaN NaN NaN NaN NaN 5715900 0 0 0 0 0 0 0 0 3453400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370 605 130 130 2938 3339 9470;9471 9968;9969 9471 9969 20190902_JH_EV_Ubi_2 8791 9471 9969 20190902_JH_EV_Ubi_2 8791 9471 9969 20190902_JH_EV_Ubi_2 8791 sp|P17980|PRS6A_HUMAN 17 sp|P17980|PRS6A_HUMAN sp|P17980|PRS6A_HUMAN sp|P17980|PRS6A_HUMAN 26S proteasome regulatory subunit 6A OS=Homo sapiens OX=9606 GN=PSMC3 PE=1 SV=3 1 68.4577 0.00239627 68.458 13.493 68.458 1 68.4577 0.00239627 68.458 1 M NLLPNIESPVTRQEKMATVWDEAEQDGIGEE X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP QEKM(1)ATVWDEAEQDGIGEEVLK QEKM(68.46)ATVWDEAEQDGIGEEVLK 4 3 1.0475 1410000 1410000 0 0 NaN 1410000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1410000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371 606 17 17 3617 4126 11616 12193 11616 12193 20190821_JH_EV_Ubi 10222 11616 12193 20190821_JH_EV_Ubi 10222 11616 12193 20190821_JH_EV_Ubi 10222 sp|P17980|PRS6A_HUMAN 175 sp|P17980|PRS6A_HUMAN sp|P17980|PRS6A_HUMAN sp|P17980|PRS6A_HUMAN 26S proteasome regulatory subunit 6A OS=Homo sapiens OX=9606 GN=PSMC3 PE=1 SV=3 1 50.884 1.28421E-05 88.282 65.38 50.884 1 88.2823 1.28421E-05 88.282 1 50.884 0.0146504 50.884 1 M ILETLPTEYDSRVKAMEVDERPTEQYSDIGG X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP VKAM(1)EVDERPTEQYSDIGGLDK VKAM(50.88)EVDERPTEQYSDIGGLDK 4 4 -2.0247 11608000 11608000 0 0 5.4426 4437200 0 0 0 7170400 0 0 0 0 2.0805 NaN NaN NaN NaN NaN NaN NaN NaN 4437200 0 0 0 0 0 0 0 0 0 0 0 7170400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 372 606 175 175 4871 5530 15656;15657 16455;16456 15657 16456 20190902_JH_EV_Ubi_3 6664 15656 16455 20190821_JH_EV_Ubi 6306 15656 16455 20190821_JH_EV_Ubi 6306 sp|P17987|TCPA_HUMAN 295 sp|P17987|TCPA_HUMAN sp|P17987|TCPA_HUMAN sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens OX=9606 GN=TCP1 PE=1 SV=1 1 79.8855 0.00132578 79.885 35.46 79.885 1 79.8855 0.00132578 79.885 1 M ATGANVILTTGGIDDMCLKYFVEAGAMAVRR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX ILATGANVILTTGGIDDM(1)CLK ILATGANVILTTGGIDDM(79.89)CLK 18 2 -0.38596 740720 740720 0 0 NaN 0 740720 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 740720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 373 607 295 295 2180 2485 7210 7585 7210 7585 20190821_JH_MUT_Ubi 11716 7210 7585 20190821_JH_MUT_Ubi 11716 7210 7585 20190821_JH_MUT_Ubi 11716 sp|P17987|TCPA_HUMAN 430 sp|P17987|TCPA_HUMAN sp|P17987|TCPA_HUMAN sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens OX=9606 GN=TCP1 PE=1 SV=1 1 49.4855 0.00130319 60.814 41.604 49.485 1 60.8139 0.00130319 60.814 1 49.4855 0.00626003 49.485 1 M VEAALSIYLENYATSMGSREQLAIAEFARSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SVVPGGGAVEAALSIYLENYATSM(1)GSR SVVPGGGAVEAALSIYLENYATSM(49.49)GSR 24 3 1.1278 1493700 1493700 0 0 NaN 0 1157300 0 0 0 336410 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1157300 0 0 0 0 0 0 0 0 0 0 0 336410 0 0 0 0 0 0 0 0 0 0 0 374 607 430 430 4226 4799 13363;13364 14017;14018 13364 14018 20190902_JH_MUT_Ubi_2 15217 13363 14017 20190821_JH_MUT_Ubi 14760 13363 14017 20190821_JH_MUT_Ubi 14760 sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN 926;994 sp|P18206-2|VINC_HUMAN sp|P18206-2|VINC_HUMAN sp|P18206-2|VINC_HUMAN Isoform 1 of Vinculin OS=Homo sapiens OX=9606 GN=VCL;sp|P18206|VINC_HUMAN Vinculin OS=Homo sapiens OX=9606 GN=VCL PE=1 SV=4 0.997252 25.5862 0.0291481 40.515 15.721 40.515 0.997252 25.5862 0.0291481 40.515 2 M KWSSKGNDIIAAAKRMALLMAEMSRLVRGGS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(0.997)ALLM(0.997)AEM(0.005)SRLVRGGSGTK M(25.59)ALLM(25.59)AEM(-25.59)SRLVRGGSGTK 1 3 -0.0055442 8361200 0 8361200 0 NaN 0 0 0 0 0 8361200 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8361200 0 0 0 0 0 0 0 0 0 0 375 610 926 926 2879 3268 9280 9766 9280 9766 20190902_JH_MUT_Ubi_2 13718 9280 9766 20190902_JH_MUT_Ubi_2 13718 9280 9766 20190902_JH_MUT_Ubi_2 13718 sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN 930;998 sp|P18206-2|VINC_HUMAN sp|P18206-2|VINC_HUMAN sp|P18206-2|VINC_HUMAN Isoform 1 of Vinculin OS=Homo sapiens OX=9606 GN=VCL;sp|P18206|VINC_HUMAN Vinculin OS=Homo sapiens OX=9606 GN=VCL PE=1 SV=4 0.997252 25.5862 0.0291481 40.515 15.721 40.515 0.997252 25.5862 0.0291481 40.515 2 M KGNDIIAAAKRMALLMAEMSRLVRGGSGTKR X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPX M(0.997)ALLM(0.997)AEM(0.005)SRLVRGGSGTK M(25.59)ALLM(25.59)AEM(-25.59)SRLVRGGSGTK 5 3 -0.0055442 8361200 0 8361200 0 NaN 0 0 0 0 0 8361200 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8361200 0 0 0 0 0 0 0 0 0 0 376 610 930 930 2879 3268 9280 9766 9280 9766 20190902_JH_MUT_Ubi_2 13718 9280 9766 20190902_JH_MUT_Ubi_2 13718 9280 9766 20190902_JH_MUT_Ubi_2 13718 sp|P18669|PGAM1_HUMAN;sp|P15259|PGAM2_HUMAN 230;230 sp|P18669|PGAM1_HUMAN sp|P18669|PGAM1_HUMAN sp|P18669|PGAM1_HUMAN Phosphoglycerate mutase 1 OS=Homo sapiens OX=9606 GN=PGAM1 PE=1 SV=2;sp|P15259|PGAM2_HUMAN Phosphoglycerate mutase 2 OS=Homo sapiens OX=9606 GN=PGAM2 PE=1 SV=3 1 90.6531 0.00393738 90.653 32.283 90.653 1 90.6531 0.00393738 90.653 M PIVYELDKNLKPIKPMQFLGDEETVRKAMEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX PM(1)QFLGDEETVR PM(90.65)QFLGDEETVR 2 2 1.9431 3324700 3324700 0 0 NaN 0 0 0 3324700 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 3324700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 377 612 230 230 3467 3954 11131 11696 11131 11696 20190902_JH_EV_Ubi_2 7514 11131 11696 20190902_JH_EV_Ubi_2 7514 11131 11696 20190902_JH_EV_Ubi_2 7514 sp|P18754|RCC1_HUMAN;sp|P18754-2|RCC1_HUMAN 163;194 sp|P18754|RCC1_HUMAN sp|P18754|RCC1_HUMAN sp|P18754|RCC1_HUMAN Regulator of chromosome condensation OS=Homo sapiens OX=9606 GN=RCC1 PE=1 SV=1;sp|P18754-2|RCC1_HUMAN Isoform 2 of Regulator of chromosome condensation OS=Homo sapiens OX=9606 GN=RCC1 1 70.6216 0.00911646 70.622 31.747 70.622 1 70.6216 0.00911646 70.622 M DNNGVIGLLEPMKKSMVPVQVQLDVPVVKVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX SM(1)VPVQVQLDVPVVK SM(70.62)VPVQVQLDVPVVK 2 2 -1.4497 799890 799890 0 0 NaN 0 0 0 0 0 0 0 0 799890 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799890 0 0 378 613 163 163 4074 4626 12901 13528 12901 13528 20190902_JH_WT_Ubi_3 12497 12901 13528 20190902_JH_WT_Ubi_3 12497 12901 13528 20190902_JH_WT_Ubi_3 12497 sp|P18846-2|ATF1_HUMAN;sp|P18846|ATF1_HUMAN 61;196 sp|P18846-2|ATF1_HUMAN sp|P18846-2|ATF1_HUMAN sp|P18846-2|ATF1_HUMAN Isoform 2 of Cyclic AMP-dependent transcription factor ATF-1 OS=Homo sapiens OX=9606 GN=ATF1;sp|P18846|ATF1_HUMAN Cyclic AMP-dependent transcription factor ATF-1 OS=Homo sapiens OX=9606 GN=ATF1 PE=1 SV=2 1 44.9306 0.0129727 57.152 28.95 44.931 1 44.9306 0.0129727 57.152 1 M IRTTPSATSLPQTVVMTSPVTLTSQTTKTDD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPXXX TTPSATSLPQTVVM(1)TSPVTLTSQTTK TTPSATSLPQTVVM(44.93)TSPVTLTSQTTK 14 3 -0.15394 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 379 615 61 61 4638 5263 14851;14852 15605;15606 14852 15606 20190902_JH_EV_Ubi_2 10590 14851 15605 20190902_JH_EV_Ubi_2 10574 14851 15605 20190902_JH_EV_Ubi_2 10574 sp|P19623|SPEE_HUMAN 274 sp|P19623|SPEE_HUMAN sp|P19623|SPEE_HUMAN sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens OX=9606 GN=SRM PE=1 SV=1 1 94.4634 0.00154598 94.463 60.308 94.463 1 94.4634 0.00154598 94.463 1 M FQEPVQPLTQQQVAQMQLKYYNSDVHRAAFV X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX NPSTNFQEPVQPLTQQQVAQM(1)QLK NPSTNFQEPVQPLTQQQVAQM(94.46)QLK 21 3 3.1855 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380 621 274 274 3192 3648 10282 10822 10282 10822 20190902_JH_WT_Ubi_2 11339 10282 10822 20190902_JH_WT_Ubi_2 11339 10282 10822 20190902_JH_WT_Ubi_2 11339 sp|P19838|NFKB1_HUMAN;sp|P19838-2|NFKB1_HUMAN 132;133 sp|P19838|NFKB1_HUMAN sp|P19838|NFKB1_HUMAN sp|P19838|NFKB1_HUMAN Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 PE=1 SV=2;sp|P19838-2|NFKB1_HUMAN Isoform 2 of Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 1 70.2805 0.00657308 70.281 30.214 70.281 1 56.2147 0.0194992 56.215 1 70.2805 0.00657308 70.281 1 M HCEDGICTVTAGPKDMVVGFANLGILHVTKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX DM(1)VVGFANLGILHVTK DM(70.28)VVGFANLGILHVTK 2 3 0.65075 2570300 2570300 0 0 NaN 0 0 0 0 0 1509800 1060400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1509800 0 0 1060400 0 0 0 0 0 0 0 0 381 622 132 132 627 719 1965;1966 2084;2085 1966 2085 20190902_JH_MUT_Ubi_3 12004 1966 2085 20190902_JH_MUT_Ubi_3 12004 1966 2085 20190902_JH_MUT_Ubi_3 12004 sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN 331;331;331;331;331;331 sp|P20020|AT2B1_HUMAN sp|P20020|AT2B1_HUMAN sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens OX=9606 GN=ATP2B1 PE=1 SV=3;sp|P20020-4|AT2B1_HUMAN Isoform C of Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens OX=9606 GN=ATP2B1;sp|P20020-3|AT2B1_HUMAN Iso 1 101.531 3.75119E-37 176.88 148.13 101.53 1 160.976 1.25866E-29 160.98 1 44.3413 4.87857E-17 145.67 1 138.247 2.99269E-16 138.25 1 74.0624 1.82762E-31 170.92 1 59.5386 2.61089E-17 146.34 1 98.8872 5.02167E-07 98.887 1 176.883 3.75119E-37 176.88 1 101.531 1.3879E-16 143 1 150.48 1.9755E-22 150.48 1;2 M AIENRNKAKAQDGAAMEMQPLKSEEGGDGDE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);Deamidation (NQ);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP AQDGAAM(1)EM(1)QPLKSEEGGDGDEK AQDGAAM(101.53)EM(101.53)QPLKSEEGGDGDEK 7 3 3.6056 119670000 3892700 115780000 0 9.9069 4901500 3461700 12109000 21825000 21736000 11478000 11341000 14590000 13206000 NaN 1.8841 5.1393 NaN NaN NaN NaN 3.7613 3.2954 2048900 2852600 0 0 3461700 0 0 12109000 0 0 21825000 0 0 21736000 0 0 11478000 0 1843700 9497300 0 0 14590000 0 0 13206000 0 382 624 331 331 250 292;293;294 841;842;843;844;845;846;847;848;849;850;851;853;859;863;864 918;919;920;921;922;923;924;925;926;927;928;930;936;940;941 864 941 20190902_JH_WT_Ubi_2 6111 848 925 20190902_JH_MUT_Ubi_3 4752 848 925 20190902_JH_MUT_Ubi_3 4752 sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN 333;333;333;333;333;333 sp|P20020|AT2B1_HUMAN sp|P20020|AT2B1_HUMAN sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens OX=9606 GN=ATP2B1 PE=1 SV=3;sp|P20020-4|AT2B1_HUMAN Isoform C of Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens OX=9606 GN=ATP2B1;sp|P20020-3|AT2B1_HUMAN Iso 1 101.531 1.55373E-87 221.51 187.68 101.53 1 160.976 1.25866E-29 160.98 1 44.3413 4.87857E-17 145.67 1 138.247 2.99269E-16 138.25 1 74.0624 1.82762E-31 170.92 1 59.5386 2.61089E-17 146.34 1 98.8872 5.78499E-09 118.76 1 176.883 3.75119E-37 176.88 1 101.531 1.3879E-16 143 1 150.48 1.55373E-87 221.51 1;2 M ENRNKAKAQDGAAMEMQPLKSEEGGDGDEKD X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);Deamidation (NQ);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX AQDGAAM(1)EM(1)QPLKSEEGGDGDEK AQDGAAM(101.53)EM(101.53)QPLKSEEGGDGDEK 9 3 3.6056 134230000 18444000 115780000 0 11.112 4901500 4838500 15099000 23164000 22927000 13967000 11838000 18006000 13206000 NaN 2.6334 6.4087 NaN NaN NaN NaN 4.6418 3.2954 2048900 2852600 0 1376900 3461700 0 2990600 12109000 0 1339200 21825000 0 1191000 21736000 0 2488800 11478000 0 2340800 9497300 0 3415500 14590000 0 0 13206000 0 383 624 333 333 250 292;293;294 841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;860;861;862;863;864 918;919;920;921;922;923;924;925;926;927;928;929;930;931;932;933;934;935;937;938;939;940;941 864 941 20190902_JH_WT_Ubi_2 6111 862 939 20190902_JH_WT_Ubi_3 6654 862 939 20190902_JH_WT_Ubi_3 6654 sp|P20073-2|ANXA7_HUMAN;sp|P20073|ANXA7_HUMAN 319;341 sp|P20073-2|ANXA7_HUMAN sp|P20073-2|ANXA7_HUMAN sp|P20073-2|ANXA7_HUMAN Isoform 2 of Annexin A7 OS=Homo sapiens OX=9606 GN=ANXA7;sp|P20073|ANXA7_HUMAN Annexin A7 OS=Homo sapiens OX=9606 GN=ANXA7 PE=1 SV=3 1 60.1576 0.0185095 60.158 37.355 60.158 1 60.1576 0.0185095 60.158 M MCQGNRDENQSINHQMAQEDAQRLYQAGEGR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPXXXXXXXX DENQSINHQM(1)AQEDAQR DENQSINHQM(60.16)AQEDAQR 10 3 -0.23551 1274500 1274500 0 0 NaN 0 0 0 0 0 0 0 1274500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1274500 0 0 0 0 0 384 626 319 319 443 518 1416 1507 1416 1507 20190902_JH_WT_Ubi_2 4936 1416 1507 20190902_JH_WT_Ubi_2 4936 1416 1507 20190902_JH_WT_Ubi_2 4936 sp|P20618|PSB1_HUMAN 172 sp|P20618|PSB1_HUMAN sp|P20618|PSB1_HUMAN sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens OX=9606 GN=PSMB1 PE=1 SV=2 1 62.9163 0.00203804 90.379 46.085 62.916 1 90.379 0.00203804 90.379 1 62.9163 0.015367 62.916 1 M SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX AGGSASAM(1)LQPLLDNQVGFK AGGSASAM(62.92)LQPLLDNQVGFK 8 3 0.48939 1068100 1068100 0 0 NaN 0 0 0 0 1068100 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1068100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 385 629 172 172 125 141 442;443 490;491 443 491 20190902_JH_WT_Ubi_3 12299 442 490 20190902_JH_EV_Ubi_3 10708 442 490 20190902_JH_EV_Ubi_3 10708 sp|P20674|COX5A_HUMAN 82 sp|P20674|COX5A_HUMAN sp|P20674|COX5A_HUMAN sp|P20674|COX5A_HUMAN Cytochrome c oxidase subunit 5A, mitochondrial OS=Homo sapiens OX=9606 GN=COX5A PE=1 SV=2 1 112.023 0.000448236 112.02 69.306 112.02 1 88.0206 0.00804531 88.021 1 112.023 0.000448236 112.02 1 M AWELRKGINTLVTYDMVPEPKIIDAALRACR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX GINTLVTYDM(1)VPEPK GINTLVTYDM(112.02)VPEPK 10 2 -0.01201 1830600 1830600 0 0 0.43042 0 0 0 0 0 707090 1123500 0 0 NaN NaN NaN NaN NaN NaN NaN 0 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 707090 0 0 1123500 0 0 0 0 0 0 0 0 386 630 82 82 1544 1759 4943;4944 5202;5203 4944 5203 20190902_JH_MUT_Ubi_3 9947 4944 5203 20190902_JH_MUT_Ubi_3 9947 4944 5203 20190902_JH_MUT_Ubi_3 9947 sp|P20929-4|NEBU_HUMAN;sp|P20929|NEBU_HUMAN;sp|P20929-3|NEBU_HUMAN;sp|P20929-2|NEBU_HUMAN 3790;3790;4033;4033 sp|P20929-4|NEBU_HUMAN sp|P20929-4|NEBU_HUMAN sp|P20929-4|NEBU_HUMAN Isoform 4 of Nebulin OS=Homo sapiens OX=9606 GN=NEB;sp|P20929|NEBU_HUMAN Nebulin OS=Homo sapiens OX=9606 GN=NEB PE=1 SV=5;sp|P20929-3|NEBU_HUMAN Isoform 3 of Nebulin OS=Homo sapiens OX=9606 GN=NEB;sp|P20929-2|NEBU_HUMAN Isoform 2 of 1 76.5732 0.000952982 76.573 14.105 76.573 1 76.5732 0.000952982 76.573 1 M GHHIGAQSIEDDPKIMCAIHAGKIQSEREYK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX GHHIGAQSIEDDPKIM(1)CAIHAGK GHHIGAQSIEDDPKIM(76.57)CAIHAGK 16 3 -0.97706 11314000 11314000 0 0 NaN 0 0 0 0 0 0 0 11314000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11314000 0 0 0 0 0 387 634 3790 3790 1515 1727 4859 5111 4859 5111 20190902_JH_WT_Ubi_2 9936 4859 5111 20190902_JH_WT_Ubi_2 9936 4859 5111 20190902_JH_WT_Ubi_2 9936 sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN 849;849 sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN Isoform 2 of Filamin-A OS=Homo sapiens OX=9606 GN=FLNA;sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens OX=9606 GN=FLNA PE=1 SV=4 1 144.4 3.67109E-22 153.36 122.71 144.4 1 109.65 1.53808E-07 109.65 1 153.365 3.67109E-22 153.36 1 107.906 3.045E-07 107.91 1 81.8069 0.000185289 81.807 1 144.4 2.56102E-16 144.4 1 M FTVKYTPRGAGSYTIMVLFADQATPTSPIRV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX GAGSYTIM(1)VLFADQATPTSPIR GAGSYTIM(144.4)VLFADQATPTSPIR 8 3 0.094259 12897000 12897000 0 0 6.6103 0 1255700 5248400 0 0 1261600 1283500 3847800 0 NaN 0.64358 NaN NaN NaN NaN NaN NaN NaN 0 0 0 1255700 0 0 5248400 0 0 0 0 0 0 0 0 1261600 0 0 1283500 0 0 3847800 0 0 0 0 0 388 637 849 849 1362 1550 4331;4332;4333;4334;4335 4554;4555;4556;4557;4558 4335 4558 20190902_JH_WT_Ubi_2 14621 4334 4557 20190821_JH_WT_Ubi 13409 4334 4557 20190821_JH_WT_Ubi 13409 sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN 746;746 sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN Isoform 2 of Filamin-A OS=Homo sapiens OX=9606 GN=FLNA;sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens OX=9606 GN=FLNA PE=1 SV=4 1 163.344 4.27762E-20 163.34 59.577 163.34 1 128.821 1.46896E-08 128.82 1 153.477 6.93062E-15 153.48 1 128.451 1.55434E-08 128.45 1 107.635 4.58068E-05 107.63 1 112.121 7.62285E-06 112.12 1 114.275 6.14213E-06 114.27 1 128.821 1.46896E-08 128.82 1 153.477 6.93062E-15 153.48 1 163.344 4.27762E-20 163.34 1 M YSCSYVPRKPVKHTAMVSWGGVSIPNSPFRV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPX HTAM(1)VSWGGVSIPNSPFR HTAM(163.34)VSWGGVSIPNSPFR 4 3 1.2375 548660000 548660000 0 0 2.73 9235800 27947000 239980000 5524800 2961300 47602000 29057000 88946000 97405000 NaN 1.273 2.4389 NaN NaN 2.7767 2.3843 4.0918 3.2955 9235800 0 0 27947000 0 0 239980000 0 0 5524800 0 0 2961300 0 0 47602000 0 0 29057000 0 0 88946000 0 0 97405000 0 0 389 637 746 746 2005 2284 6563;6564;6565;6566;6567;6568;6569;6570;6571 6904;6905;6906;6907;6908;6909;6910;6911;6912;6913 6571 6913 20190902_JH_WT_Ubi_3 11699 6571 6913 20190902_JH_WT_Ubi_3 11699 6571 6913 20190902_JH_WT_Ubi_3 11699 sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN 1841;1849 sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN sp|P21333-2|FLNA_HUMAN Isoform 2 of Filamin-A OS=Homo sapiens OX=9606 GN=FLNA;sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens OX=9606 GN=FLNA PE=1 SV=4 1 55.0962 0.000103739 55.096 40.085 55.096 1 49.0731 0.000684 49.073 1 50.4437 0.000346144 50.444 1 42.6523 0.00226677 42.652 1 50.8803 0.000238505 50.88 1 55.0962 0.000103739 55.096 1 M PSEAGLHEMDIRYDNMHIPGSPLQFYVDYVN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP YDNM(1)HIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNK YDNM(55.1)HIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNK 4 4 0.99439 163390000 163390000 0 0 2.44 0 20707000 59925000 0 0 14167000 0 66004000 0 NaN 1.2273 1.3155 NaN NaN NaN NaN 14.553 NaN 0 0 0 20707000 0 0 59925000 0 0 0 0 0 0 0 0 14167000 0 0 0 0 0 66004000 0 0 0 0 0 390 637 1841 1841 5117 5818 16497;16498;16499;16500;16501 17339;17340;17341;17342;17343 16501 17343 20190902_JH_WT_Ubi_3 13004 16501 17343 20190902_JH_WT_Ubi_3 13004 16501 17343 20190902_JH_WT_Ubi_3 13004 sp|P21397|AOFA_HUMAN 13 sp|P21397|AOFA_HUMAN sp|P21397|AOFA_HUMAN sp|P21397|AOFA_HUMAN Amine oxidase [flavin-containing] A OS=Homo sapiens OX=9606 GN=MAOA PE=1 SV=1 1 98.7595 1.00127E-07 99.603 59.417 98.76 1 99.6029 1.00127E-07 99.603 1 98.7595 2.19508E-07 98.76 1 M ___MENQEKASIAGHMFDVVVIGGGISGLSA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP ASIAGHM(1)FDVVVIGGGISGLSAAK ASIAGHM(98.76)FDVVVIGGGISGLSAAK 7 3 -2.088 26627000 26627000 0 0 0.67334 0 4318200 22309000 0 0 0 0 0 0 NaN 0.76866 0.97576 NaN NaN 0 0 0 0 0 0 0 4318200 0 0 22309000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391 638 13 13 275 323 943;944 1022;1023 944 1023 20190821_JH_WT_Ubi 11727 943 1022 20190821_JH_MUT_Ubi 11258 943 1022 20190821_JH_MUT_Ubi 11258 sp|P21583-3|SCF_HUMAN;sp|P21583-2|SCF_HUMAN;sp|P21583|SCF_HUMAN 227;234;262 sp|P21583-3|SCF_HUMAN sp|P21583-3|SCF_HUMAN sp|P21583-3|SCF_HUMAN Isoform 3 of Kit ligand OS=Homo sapiens OX=9606 GN=KITLG;sp|P21583-2|SCF_HUMAN Isoform 2 of Kit ligand OS=Homo sapiens OX=9606 GN=KITLG;sp|P21583|SCF_HUMAN Kit ligand OS=Homo sapiens OX=9606 GN=KITLG PE=1 SV=1 1 71.853 0.000909188 73.984 49.305 71.853 1 73.9837 0.000909188 73.984 1 71.853 0.00555167 71.853 1 M AVENIQINEEDNEISMLQEKEREFQEV____ X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX AVENIQINEEDNEISM(1)LQEKER AVENIQINEEDNEISM(71.85)LQEKER 16 3 2.0764 3683800 3683800 0 0 1.856 2822200 0 0 0 0 0 0 0 0 1.4219 NaN NaN NaN NaN NaN NaN NaN NaN 2822200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 392 639 227 227 323 377;379 1086;1088 1173;1175 1088 1175 20190902_JH_MUT_Ubi_2 9732 1086 1173 20190821_JH_EV_Ubi 8941 1086 1173 20190821_JH_EV_Ubi 8941 sp|P21796|VDAC1_HUMAN 129 sp|P21796|VDAC1_HUMAN sp|P21796|VDAC1_HUMAN sp|P21796|VDAC1_HUMAN Voltage-dependent anion-selective channel protein 1 OS=Homo sapiens OX=9606 GN=VDAC1 PE=1 SV=2 1 82.7551 1.97607E-13 141.07 98.735 82.755 1 141.072 1.97607E-13 141.07 1 77.2211 0.00507114 77.221 1 82.7551 0.000585858 82.755 1 M IKTGYKREHINLGCDMDFDIAGPSIRGALVL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX EHINLGCDM(1)DFDIAGPSIR EHINLGCDM(82.76)DFDIAGPSIR 9 3 0.33505 12894000 12894000 0 0 2.1667 0 0 7846500 540410 0 0 0 0 4506700 NaN NaN 1.3186 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7846500 0 0 540410 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4506700 0 0 393 640 129 129 921 1041 2918;2919;2920 3071;3072;3073 2920 3073 20190902_JH_WT_Ubi_3 11446 2919 3072 20190821_JH_WT_Ubi 10010 2919 3072 20190821_JH_WT_Ubi 10010 sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN 330;330 sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 PE=1 SV=2;sp|P21980-2|TGM2_HUMAN Isoform 2 of Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 1 98.4084 0.000290725 98.572 70.407 98.408 1 58.4615 0.0131061 58.461 1 98.5725 0.000290725 98.572 1 98.4084 0.000298005 98.408 2 M YFRNEFGEIQGDKSEMIWNFHCWVESWMTRP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX SEM(1)IWNFHCWVESWM(1)TR SEM(98.41)IWNFHCWVESWM(98.41)TR 3 3 0.16778 11109000 0 11109000 0 NaN 0 711740 3588100 0 0 0 0 6809200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 711740 0 0 3588100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6809200 0 0 0 0 394 645 330 330 3892 4419 12320;12321;12322 12919;12920;12921 12322 12921 20190902_JH_WT_Ubi_2 14580 12321 12920 20190821_JH_WT_Ubi 13305 12321 12920 20190821_JH_WT_Ubi 13305 sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN 342;342 sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 PE=1 SV=2;sp|P21980-2|TGM2_HUMAN Isoform 2 of Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 1 98.4084 0.000290725 98.572 70.407 98.408 1 58.4615 0.0131061 58.461 1 98.5725 0.000290725 98.572 1 98.4084 0.000298005 98.408 2 M KSEMIWNFHCWVESWMTRPDLQPGYEGWQAL X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SEM(1)IWNFHCWVESWM(1)TR SEM(98.41)IWNFHCWVESWM(98.41)TR 15 3 0.16778 11109000 0 11109000 0 NaN 0 711740 3588100 0 0 0 0 6809200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 711740 0 0 3588100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6809200 0 0 0 0 395 645 342 342 3892 4419 12320;12321;12322 12919;12920;12921 12322 12921 20190902_JH_WT_Ubi_2 14580 12321 12920 20190821_JH_WT_Ubi 13305 12321 12920 20190821_JH_WT_Ubi 13305 sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN 483;483 sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 PE=1 SV=2;sp|P21980-2|TGM2_HUMAN Isoform 2 of Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 1 104.885 1.23238E-25 141 121.62 104.89 1 69.2917 0.000226158 69.292 1 42.9304 0.0126776 42.93 1 115.92 5.39765E-16 115.92 1 90.3974 5.01428E-07 90.397 1 64.707 0.000353115 64.707 1 120.378 1.23238E-25 141 1 104.885 6.69413E-21 129.04 1;2 M KEETGMAMRIRVGQSMNMGSDFDVFAHITNN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP VGQSM(1)NM(1)GSDFDVFAHITNNTAEEYVCR VGQSM(104.89)NM(104.89)GSDFDVFAHITNNTAEEYVCR 5 3 1.276 113550000 4163900 109390000 0 6.1618 5421100 2815700 38429000 603850 1458600 0 0 24506000 32084000 NaN 1.9639 2.3701 NaN NaN NaN NaN 31.378 NaN 0 5421100 0 0 2815700 0 0 38429000 0 0 603850 0 0 1458600 0 0 0 0 0 0 0 0 24506000 0 4163900 27921000 0 396 645 483 483 4836 5487;5488;5490 15504;15505;15506;15507;15508;15509;15510;15511;15514;15518;15519 16284;16285;16286;16287;16288;16289;16290;16291;16292;16296;16301;16302 15519 16302 20190902_JH_WT_Ubi_3 12955 15509 16290 20190902_JH_WT_Ubi_2 13245 15509 16290 20190902_JH_WT_Ubi_2 13245 sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN 485;485 sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 PE=1 SV=2;sp|P21980-2|TGM2_HUMAN Isoform 2 of Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 1 104.885 1.23238E-25 141 121.62 104.89 1 69.2917 0.000226158 69.292 1 42.9304 0.0126776 42.93 1 115.92 5.39765E-16 115.92 1 90.3974 5.01428E-07 90.397 1 64.707 0.000353115 64.707 1 120.378 1.23238E-25 141 1 104.885 6.69413E-21 129.04 1;2 M ETGMAMRIRVGQSMNMGSDFDVFAHITNNTA X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP VGQSM(1)NM(1)GSDFDVFAHITNNTAEEYVCR VGQSM(104.89)NM(104.89)GSDFDVFAHITNNTAEEYVCR 7 3 1.276 118110000 8721800 109390000 0 6.4092 5421100 2815700 44498000 603850 1458600 0 0 24506000 30573000 NaN 1.9639 2.7445 NaN NaN NaN NaN 31.378 NaN 0 5421100 0 0 2815700 0 6069700 38429000 0 0 603850 0 0 1458600 0 0 0 0 0 0 0 0 24506000 0 2652000 27921000 0 397 645 485 485 4836 5487;5488;5490 15504;15505;15506;15507;15508;15509;15510;15512;15513;15518;15519 16284;16285;16286;16287;16288;16289;16290;16291;16293;16294;16295;16301;16302 15519 16302 20190902_JH_WT_Ubi_3 12955 15509 16290 20190902_JH_WT_Ubi_2 13245 15509 16290 20190902_JH_WT_Ubi_2 13245 sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN 227;227;227 sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2 PE=1 SV=2;sp|P21980-2|TGM2_HUMAN Isoform 2 of Protein-glutamine gamma-glutamyltransferase 2 OS=Homo sapiens OX=9606 GN=TGM2;sp|P21980-3|TGM2_HUMAN Isoform 3 1 141.101 1.54674E-15 157.84 104.67 141.1 1 157.838 1.54674E-15 157.84 1 60.1963 0.00600199 60.196 1 137.787 5.91651E-11 137.79 1 141.101 3.81556E-11 141.1 1 M SRRSSPVYVGRVVSGMVNCNDDQGVLLGRWD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX VVSGM(1)VNCNDDQGVLLGR VVSGM(141.1)VNCNDDQGVLLGR 5 3 1.2391 26290000 26290000 0 0 6.5927 0 0 4659200 0 0 0 0 12812000 7758400 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4659200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12812000 0 0 7758400 0 0 398 645 227 227 5065 5756;5757 16332;16333;16334;16335 17165;17166;17167;17168 16335 17168 20190902_JH_WT_Ubi_3 9471 16333 17166 20190821_JH_WT_Ubi 7735 16333 17166 20190821_JH_WT_Ubi 7735 sp|P22102|PUR2_HUMAN;sp|P22102-2|PUR2_HUMAN 233;233 sp|P22102|PUR2_HUMAN sp|P22102|PUR2_HUMAN sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens OX=9606 GN=GART PE=1 SV=1;sp|P22102-2|PUR2_HUMAN Isoform Short of Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens OX=9606 GN=GART 1 60.9505 0.000661416 60.95 18.338 60.95 1 60.9505 0.000661416 60.95 1 M HKRLLEGDGGPNTGGMGAYCPAPQVSNDLLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP LLEGDGGPNTGGM(1)GAYCPAPQVSNDLLLK LLEGDGGPNTGGM(60.95)GAYCPAPQVSNDLLLK 13 3 -2.8231 2437700 2437700 0 0 NaN 0 0 0 0 0 0 0 0 2437700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2437700 0 0 399 648 233 233 2684 3053 8729 9178 8729 9178 20190902_JH_WT_Ubi_3 13002 8729 9178 20190902_JH_WT_Ubi_3 13002 8729 9178 20190902_JH_WT_Ubi_3 13002 sp|P22234|PUR6_HUMAN;sp|P22234-2|PUR6_HUMAN 244;251 sp|P22234|PUR6_HUMAN sp|P22234|PUR6_HUMAN sp|P22234|PUR6_HUMAN Multifunctional protein ADE2 OS=Homo sapiens OX=9606 GN=PAICS PE=1 SV=3;sp|P22234-2|PUR6_HUMAN Isoform 2 of Multifunctional protein ADE2 OS=Homo sapiens OX=9606 GN=PAICS 1 89.0795 0.00759989 89.08 19.735 89.08 1 89.0795 0.00759989 89.08 M QSYRDLKEVTPEGLQMVKKNFEWVAERVELL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPXXXXXXXXXXXXX EVTPEGLQM(1)VK EVTPEGLQM(89.08)VK 9 2 0.37055 3409500 3409500 0 0 NaN 0 0 3409500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3409500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 400 649 244 244 1147 1294 3666 3860 3666 3860 20190821_JH_WT_Ubi 6134 3666 3860 20190821_JH_WT_Ubi 6134 3666 3860 20190821_JH_WT_Ubi 6134 sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN 819;859 sp|P22314-2|UBA1_HUMAN sp|P22314-2|UBA1_HUMAN sp|P22314-2|UBA1_HUMAN Isoform 2 of Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1;sp|P22314|UBA1_HUMAN Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1 PE=1 SV=3 1 80.7384 0.00105316 80.738 43.084 80.738 1 72.819 0.00264394 72.819 1 80.7384 0.00105316 80.738 1 M MYPIDFEKDDDSNFHMDFIVAASNLRAENYD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPXXXXX DDDSNFHM(1)DFIVAASNLR DDDSNFHM(80.74)DFIVAASNLR 8 3 -0.93988 5025100 5025100 0 0 0.71761 0 0 2287900 0 0 0 0 2737100 0 NaN 0 0.46108 NaN NaN NaN 0 NaN NaN 0 0 0 0 0 0 2287900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2737100 0 0 0 0 0 401 651 819 819 411 485 1340;1341 1430;1431 1341 1431 20190902_JH_WT_Ubi_2 13038 1341 1431 20190902_JH_WT_Ubi_2 13038 1341 1431 20190902_JH_WT_Ubi_2 13038 sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN 370;410 sp|P22314-2|UBA1_HUMAN sp|P22314-2|UBA1_HUMAN sp|P22314-2|UBA1_HUMAN Isoform 2 of Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1;sp|P22314|UBA1_HUMAN Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1 PE=1 SV=3 1 40.2373 1.96077E-15 124.21 101.97 40.237 1 40.2373 0.0223046 40.237 1 124.207 1.96077E-15 124.21 1 M APINAFIGGLAAQEVMKACSGKFMPIMQWLY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX LAYVAAGDLAPINAFIGGLAAQEVM(1)K LAYVAAGDLAPINAFIGGLAAQEVM(40.24)K 25 3 0.17104 4676800 4676800 0 0 NaN 0 0 3113000 0 0 0 1563900 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3113000 0 0 0 0 0 0 0 0 0 0 0 1563900 0 0 0 0 0 0 0 0 402 651 370 370 2521 2862 8184;8185 8602;8603 8185 8603 20190821_JH_WT_Ubi 15905 8184 8602 20190902_JH_MUT_Ubi_3 13954 8184 8602 20190902_JH_MUT_Ubi_3 13954 sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN 183;68;53 sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens OX=9606 GN=NME2;sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B OS=Homo sapiens OX=9606 GN=NME2 PE=1 SV=1;sp|O60361|NDK8_HUMAN Putative nucleoside diphosphate kinase O 1 89.4682 4.73189E-18 152.59 114.95 89.468 1 124.454 6.82807E-09 124.45 1 109.717 4.73189E-18 152.59 1 81.6388 0.000616867 81.639 1 127.966 4.58417E-09 127.97 1 100.966 6.11464E-05 100.97 1 89.4682 0.00020611 89.468 1;2 M IDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP YM(1)NSGPVVAM(1)VWEGLNVVK YM(89.47)NSGPVVAM(89.47)VWEGLNVVK 2 3 0.35267 25176000 10325000 14851000 0 17.451 0 4952400 11993000 0 0 1695300 2152000 1952300 2431200 NaN 3.4328 NaN NaN NaN NaN NaN NaN NaN 0 0 0 3454700 1497700 0 6243000 5749500 0 0 0 0 0 0 0 0 1695300 0 627100 1524900 0 0 1952300 0 0 2431200 0 403 652 183 183 5177 5891;5892 16709;16710;16711;16712;16713;16714;16715;16716;16717 17564;17565;17566;17567;17568;17569;17570;17571;17572;17573;17574 16714 17569 20190902_JH_WT_Ubi_3 14111 16717 17574 20190821_JH_WT_Ubi 15233 16717 17574 20190821_JH_WT_Ubi 15233 sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN 191;76;61 sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN sp|P22392-2|NDKB_HUMAN Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens OX=9606 GN=NME2;sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B OS=Homo sapiens OX=9606 GN=NME2 PE=1 SV=1;sp|O60361|NDK8_HUMAN Putative nucleoside diphosphate kinase O 1 89.4682 4.58417E-09 127.97 97.424 89.468 1 124.454 6.82807E-09 124.45 1 109.717 1.19215E-05 109.72 1 81.6388 0.000616867 81.639 1 127.966 4.58417E-09 127.97 1 100.966 6.11464E-05 100.97 1 89.4682 0.00020611 89.468 2 M FPGLVKYMNSGPVVAMVWEGLNVVKTGRVML X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPXXXXXX YM(1)NSGPVVAM(1)VWEGLNVVK YM(89.47)NSGPVVAM(89.47)VWEGLNVVK 10 3 0.35267 14851000 0 14851000 0 10.294 0 1497700 5749500 0 0 1695300 1524900 1952300 2431200 NaN 1.0382 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1497700 0 0 5749500 0 0 0 0 0 0 0 0 1695300 0 0 1524900 0 0 1952300 0 0 2431200 0 404 652 191 191 5177 5891;5892 16709;16710;16711;16712;16713;16714 17564;17565;17566;17567;17568;17569;17570 16714 17569 20190902_JH_WT_Ubi_3 14111 16711 17566 20190902_JH_MUT_Ubi_3 12695 16711 17566 20190902_JH_MUT_Ubi_3 12695 sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN 60;72 sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1;sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2 1 141.101 3.20776E-18 149.19 97.466 141.1 1 63.8269 0.0120368 63.827 1 149.193 3.20776E-18 149.19 1 141.101 8.79081E-14 141.1 2 M ASKRSRGFGFVTFSSMAEVDAAMAARPHSID X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPXXXXX GFGFVTFSSM(1)AEVDAAM(1)AAR GFGFVTFSSM(141.1)AEVDAAM(141.1)AAR 10 3 1.1942 4431500 0 4431500 0 NaN 0 0 1407700 0 0 0 0 1553400 1470400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1407700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1553400 0 0 1470400 0 405 653 60 60 1457 1659 4636;4637;4638 4869;4870;4871;4872 4638 4872 20190902_JH_WT_Ubi_3 13502 4637 4870 20190902_JH_WT_Ubi_2 13995 4637 4870 20190902_JH_WT_Ubi_2 13995 sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN 67;79 sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1;sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2 1 141.101 3.20776E-18 149.19 97.466 141.1 1 63.8269 0.0120368 63.827 1 149.193 3.20776E-18 149.19 1 141.101 8.79081E-14 141.1 2 M FGFVTFSSMAEVDAAMAARPHSIDGRVVEPK X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX GFGFVTFSSM(1)AEVDAAM(1)AAR GFGFVTFSSM(141.1)AEVDAAM(141.1)AAR 17 3 1.1942 4431500 0 4431500 0 NaN 0 0 1407700 0 0 0 0 1553400 1470400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1407700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1553400 0 0 1470400 0 406 653 67 67 1457 1659 4636;4637;4638 4869;4870;4871;4872 4638 4872 20190902_JH_WT_Ubi_3 13502 4637 4870 20190902_JH_WT_Ubi_2 13995 4637 4870 20190902_JH_WT_Ubi_2 13995 sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN 315;327 sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1;sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2 1 118.079 2.34586E-15 126.62 86.342 118.08 1 124.101 3.03894E-15 124.1 1 126.619 2.34586E-15 126.62 1 109.228 1.70593E-10 109.23 1 112.41 4.47715E-12 112.41 1 89.4697 1.53621E-06 89.47 1 106.229 4.2331E-10 106.23 1 120.661 1.04591E-12 120.66 1 118.079 2.11971E-12 118.08 1 M NYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)GGPYGGGNYGPGGSGGSGGYGGR NM(118.08)GGPYGGGNYGPGGSGGSGGYGGR 2 3 -0.45662 50102000 50102000 0 0 NaN 3478200 0 5253300 4668600 6624200 923290 1879100 11984000 15291000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3478200 0 0 0 0 0 5253300 0 0 4668600 0 0 6624200 0 0 923290 0 0 1879100 0 0 11984000 0 0 15291000 0 0 407 653 315 315 3160 3610 10163;10164;10165;10166;10167;10168;10169;10170 10700;10701;10702;10703;10704;10705;10706;10707 10170 10707 20190902_JH_WT_Ubi_3 7295 10168 10705 20190821_JH_WT_Ubi 5624 10168 10705 20190821_JH_WT_Ubi 5624 sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN 41;53 sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN sp|P22626-2|ROA2_HUMAN Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1;sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2 1 58.0902 0.00141409 91.657 67.614 58.09 1 91.6568 0.00141409 91.657 1 58.0902 0.0246233 58.09 1 M RNYYEQWGKLTDCVVMRDPASKRSRGFGFVT X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX NYYEQWGKLTDCVVM(1)R NYYEQWGKLTDCVVM(58.09)R 15 3 -0.91531 6292600 6292600 0 0 3.6873 0 2222900 4069700 0 0 0 0 0 0 NaN 1.3025 NaN NaN NaN NaN NaN NaN NaN 0 0 0 2222900 0 0 4069700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 408 653 41 41 3276 3742 10530;10531 11079;11080 10531 11080 20190821_JH_WT_Ubi 9707 10530 11079 20190821_JH_MUT_Ubi 9369 10530 11079 20190821_JH_MUT_Ubi 9369 sp|P22794|EVI2A_HUMAN;sp|P22794-2|EVI2A_HUMAN 209;232 sp|P22794|EVI2A_HUMAN sp|P22794|EVI2A_HUMAN sp|P22794|EVI2A_HUMAN Protein EVI2A OS=Homo sapiens OX=9606 GN=EVI2A PE=2 SV=2;sp|P22794-2|EVI2A_HUMAN Isoform 2 of Protein EVI2A OS=Homo sapiens OX=9606 GN=EVI2A 1 77.9594 0.000535184 77.959 51.616 77.959 1 77.9594 0.000535184 77.959 1 M DTWKRTKQLTGPNLVMQSTGVLTATRERKDE X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPXXXXX TKQLTGPNLVM(1)QSTGVLTATR TKQLTGPNLVM(77.96)QSTGVLTATR 11 3 0.26175 1410600 1410600 0 0 NaN 0 0 0 0 0 0 0 0 1410600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1410600 0 0 409 656 209 209 4449 5047 14131 14835;14836 14131 14835 20190902_JH_WT_Ubi_3 9987 14131 14835 20190902_JH_WT_Ubi_3 9987 14131 14835 20190902_JH_WT_Ubi_3 9987 sp|Q9NRH3|TBG2_HUMAN;sp|P23258|TBG1_HUMAN 236;236 sp|Q9NRH3|TBG2_HUMAN sp|Q9NRH3|TBG2_HUMAN sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens OX=9606 GN=TUBG2 PE=2 SV=1;sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens OX=9606 GN=TUBG1 PE=1 SV=2 1 82.3809 2.56231E-10 104.26 70.427 82.381 1 104.26 2.56231E-10 104.26 1 82.3809 4.27576E-05 82.381 1 M QNPSFSQINQLVSTIMSASTTTLRYPGYMNN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LHIQNPSFSQINQLVSTIM(1)SASTTTLR LHIQNPSFSQINQLVSTIM(82.38)SASTTTLR 19 3 1.6981 4359400 4359400 0 0 NaN 0 1706200 2653200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1706200 0 0 2653200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 410 659 236 236 2639 3000 8558;8559 8999;9000 8559 9000 20190821_JH_WT_Ubi 14912 8558 8999 20190821_JH_MUT_Ubi 13988 8558 8999 20190821_JH_MUT_Ubi 13988 sp|P23284|PPIB_HUMAN 101 sp|P23284|PPIB_HUMAN sp|P23284|PPIB_HUMAN sp|P23284|PPIB_HUMAN Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens OX=9606 GN=PPIB PE=1 SV=2 1 62.6328 0.0314552 62.633 22.97 62.633 1 62.6328 0.0314552 62.633 M FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX DFM(1)IQGGDFTR DFM(62.63)IQGGDFTR 3 2 0.64896 732130 732130 0 0 NaN 0 0 0 0 0 0 0 732130 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732130 0 0 0 0 0 411 660 101 101 463 538 1470 1563 1470 1563 20190902_JH_WT_Ubi_2 11859 1470 1563 20190902_JH_WT_Ubi_2 11859 1470 1563 20190902_JH_WT_Ubi_2 11859 sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN 157;173 sp|P23396|RS3_HUMAN sp|P23396|RS3_HUMAN sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens OX=9606 GN=RPS3 PE=1 SV=2;sp|P23396-2|RS3_HUMAN Isoform 2 of 40S ribosomal protein S3 OS=Homo sapiens OX=9606 GN=RPS3 1 56.5288 3.99775E-22 152.86 119.5 56.529 1 152.855 3.99775E-22 152.86 1 56.5288 0.00759582 56.529 1 M LRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP FVDGLM(1)IHSGDPVNYYVDTAVR FVDGLM(56.53)IHSGDPVNYYVDTAVR 6 3 0.94719 17298000 17298000 0 0 NaN 0 0 9830300 0 0 0 0 7467600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9830300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7467600 0 0 0 0 0 412 662 157 157 1320 1495 4163;4164 4375;4376 4164 4376 20190902_JH_WT_Ubi_2 13052 4163 4375 20190821_JH_WT_Ubi 11380 4163 4375 20190821_JH_WT_Ubi 11380 sp|P23528|COF1_HUMAN 74 sp|P23528|COF1_HUMAN sp|P23528|COF1_HUMAN sp|P23528|COF1_HUMAN Cofilin-1 OS=Homo sapiens OX=9606 GN=CFL1 PE=1 SV=3 1 98.6838 1.2202E-07 98.684 66.925 98.684 1 47.0886 0.0189805 47.089 1 80.0158 0.000160797 80.016 1 98.6838 1.2202E-07 98.684 1 M DVGQTVDDPYATFVKMLPDKDCRYALYDATY X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX EILVGDVGQTVDDPYATFVKM(1)LPDK EILVGDVGQTVDDPYATFVKM(98.68)LPDK 21 3 -0.69148 4071000 4071000 0 0 2.6631 0 814590 0 0 0 1271900 0 0 1984600 NaN 0.53288 NaN NaN NaN NaN NaN NaN NaN 0 0 0 814590 0 0 0 0 0 0 0 0 0 0 0 1271900 0 0 0 0 0 0 0 0 1984600 0 0 413 667 74 74 945 1066 2971;2972;2973 3125;3126;3127 2973 3127 20190902_JH_WT_Ubi_3 14165 2973 3127 20190902_JH_WT_Ubi_3 14165 2973 3127 20190902_JH_WT_Ubi_3 14165 sp|P24534|EF1B_HUMAN 155 sp|P24534|EF1B_HUMAN sp|P24534|EF1B_HUMAN sp|P24534|EF1B_HUMAN Elongation factor 1-beta OS=Homo sapiens OX=9606 GN=EEF1B2 PE=1 SV=3 1 86.5477 0.00170095 86.548 46.863 86.548 1 84.1397 0.00248267 84.14 1 86.5477 0.00170095 86.548 1 84.1397 0.00248267 84.14 1 66.3353 0.0186345 66.335 1 M SSILLDVKPWDDETDMAKLEECVRSIQADGL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SSILLDVKPWDDETDM(1)AK SSILLDVKPWDDETDM(86.55)AK 16 3 0.72124 12443000 12443000 0 0 NaN 0 2644400 5718000 1042800 0 3038100 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2644400 0 0 5718000 0 0 1042800 0 0 0 0 0 3038100 0 0 0 0 0 0 0 0 0 0 0 414 671 155 155 4167 4734 13194;13195;13196;13197 13837;13838;13839;13840 13197 13840 20190821_JH_WT_Ubi 10602 13197 13840 20190821_JH_WT_Ubi 10602 13197 13840 20190821_JH_WT_Ubi 10602 sp|P24928|RPB1_HUMAN 1262 sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2 1 57.9357 0.00324336 67.685 42.631 57.936 1 67.6848 0.00324336 67.685 1 57.9357 0.00814586 57.936 2 M FNDDNAEKLVLRIRIMNSDENKMQEEEEVVD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP IM(1)NSDENKM(1)QEEEEVVDK IM(57.94)NSDENKM(57.94)QEEEEVVDK 2 3 0.12632 1228000 0 1228000 0 NaN 0 0 0 0 0 798770 429210 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 798770 0 0 429210 0 0 0 0 0 0 0 415 674 1262 1262 2209 2517 7285;7286 7663;7664 7286 7664 20190902_JH_MUT_Ubi_3 5021 7285 7663 20190902_JH_MUT_Ubi_2 5242 7285 7663 20190902_JH_MUT_Ubi_2 5242 sp|P24928|RPB1_HUMAN 1269 sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2 1 57.9357 0.00324336 67.685 42.631 57.936 1 67.6848 0.00324336 67.685 1 57.9357 0.00814586 57.936 2 M KLVLRIRIMNSDENKMQEEEEVVDKMDDDVF X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX IM(1)NSDENKM(1)QEEEEVVDK IM(57.94)NSDENKM(57.94)QEEEEVVDK 9 3 0.12632 1228000 0 1228000 0 NaN 0 0 0 0 0 798770 429210 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 798770 0 0 429210 0 0 0 0 0 0 0 416 674 1269 1269 2209 2517 7285;7286 7663;7664 7286 7664 20190902_JH_MUT_Ubi_3 5021 7285 7663 20190902_JH_MUT_Ubi_2 5242 7285 7663 20190902_JH_MUT_Ubi_2 5242 sp|P24928|RPB1_HUMAN;sp|P24928-2|RPB1_HUMAN 160;160 sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2;sp|P24928-2|RPB1_HUMAN Isoform 2 of DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A 1 136.565 8.05577E-20 136.57 108.39 136.57 1 136.565 8.05577E-20 136.57 1 M YDLCKGKNICEGGEEMDNKFGVEQPEGDEDL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP NICEGGEEM(1)DNKFGVEQPEGDEDLTK NICEGGEEM(136.57)DNKFGVEQPEGDEDLTK 9 3 1.2929 1487300 1487300 0 0 NaN 0 0 0 0 0 1487300 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1487300 0 0 0 0 0 0 0 0 0 0 0 417 674 160 160 3082 3529 9963 10495 9963 10495 20190902_JH_MUT_Ubi_2 8433 9963 10495 20190902_JH_MUT_Ubi_2 8433 9963 10495 20190902_JH_MUT_Ubi_2 8433 sp|P25398|RS12_HUMAN 12 sp|P25398|RS12_HUMAN sp|P25398|RS12_HUMAN sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3 1 48.1957 1.7288E-11 125.79 71.027 48.196 1 97.6207 1.74597E-06 97.621 1 125.795 1.7288E-11 125.79 1 110.64 2.71548E-05 110.64 1 120.9 2.74361E-09 120.9 1 78.554 0.00701012 78.554 1 70.0202 0.000977193 70.02 1 48.1957 0.0123689 48.196 1 M ____MAEEGIAAGGVMDVNTALQEVLKTALI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPXXXX AEEGIAAGGVM(1)DVNTALQEVLK AEEGIAAGGVM(48.2)DVNTALQEVLK 11 3 -0.00468 5791900 5791900 0 0 5.2215 851320 0 1990300 0 313830 0 0 1002500 1634000 NaN NaN 1.7942 NaN NaN NaN NaN NaN NaN 851320 0 0 0 0 0 1990300 0 0 0 0 0 313830 0 0 0 0 0 0 0 0 1002500 0 0 1634000 0 0 418 677 12 12 83 95 295;296;297;298;299;300;301 313;314;315;316;317;318;319 301 319 20190902_JH_WT_Ubi_3 15923 299 317 20190821_JH_WT_Ubi 16047 299 317 20190821_JH_WT_Ubi 16047 sp|P25398|RS12_HUMAN 60 sp|P25398|RS12_HUMAN sp|P25398|RS12_HUMAN sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3 1 72.4463 0.00280646 72.446 25.783 72.446 1 72.4463 0.00280646 72.446 1 M RQAHLCVLASNCDEPMYVKLVEALCAEHQIN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX QAHLCVLASNCDEPM(1)YVK QAHLCVLASNCDEPM(72.45)YVK 15 3 -1.1359 820600 820600 0 0 0.19698 0 820600 0 0 0 0 0 0 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 820600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 419 677 60 60 3598 4106 11588 12165 11588 12165 20190821_JH_MUT_Ubi 6575 11588 12165 20190821_JH_MUT_Ubi 6575 11588 12165 20190821_JH_MUT_Ubi 6575 sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN 246;296;274 sp|P25705-2|ATPA_HUMAN sp|P25705-2|ATPA_HUMAN sp|P25705-2|ATPA_HUMAN Isoform 2 of ATP synthase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A;sp|P25705|ATPA_HUMAN ATP synthase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A PE=1 SV=1;sp|P25705-3|ATPA_HUMAN Isoform 3 of 1 90.7802 1.54138E-07 90.78 66.43 90.78 1 90.7802 1.54138E-07 90.78 1 M DAAPLQYLAPYSGCSMGEYFRDNGKHALIIY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX YTIVVSATASDAAPLQYLAPYSGCSM(1)GEYFR YTIVVSATASDAAPLQYLAPYSGCSM(90.78)GEYFR 26 3 0.085081 2887800 2887800 0 0 NaN 0 0 0 0 0 0 0 2887800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2887800 0 0 0 0 0 420 680 246 246 5208 5927 16807 17666 16807 17666 20190902_JH_WT_Ubi_2 15718 16807 17666 20190902_JH_WT_Ubi_2 15718 16807 17666 20190902_JH_WT_Ubi_2 15718 sp|P25787|PSA2_HUMAN 79 sp|P25787|PSA2_HUMAN sp|P25787|PSA2_HUMAN sp|P25787|PSA2_HUMAN Proteasome subunit alpha type-2 OS=Homo sapiens OX=9606 GN=PSMA2 PE=1 SV=2 1 51.5662 4.00962E-05 102.47 68.8 51.566 1 61.6835 0.00819961 61.684 1 54.3549 0.0100159 54.355 1 40.616 0.0296463 40.616 1 51.8194 0.0118777 51.819 1 45.357 0.0219403 45.357 1 102.466 4.00962E-05 102.47 1 51.5662 0.0120637 51.566 1 M KVEPITKHIGLVYSGMGPDYRVLVHRARKLA X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX VEPITKHIGLVYSGM(1)GPDYR VEPITKHIGLVYSGM(51.57)GPDYR 15 4 -1.0179 110800000 110800000 0 0 4.6047 0 0 27395000 0 3390000 10515000 9255500 24767000 28503000 NaN 0 1.7342 NaN NaN 2.4235 NaN NaN NaN 0 0 0 0 0 0 27395000 0 0 0 0 0 3390000 0 0 10515000 0 0 9255500 0 0 24767000 0 0 28503000 0 0 421 682 79 79 4796 5440 15372;15373;15374;15375;15376;15377;15378;15379 16145;16146;16147;16148;16149;16150;16151;16152 15379 16152 20190902_JH_WT_Ubi_3 9273 15378 16151 20190902_JH_WT_Ubi_2 9753 15378 16151 20190902_JH_WT_Ubi_2 9753 sp|P25788-2|PSA3_HUMAN;sp|P25788|PSA3_HUMAN 76;76 sp|P25788-2|PSA3_HUMAN sp|P25788-2|PSA3_HUMAN sp|P25788-2|PSA3_HUMAN Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens OX=9606 GN=PSMA3;sp|P25788|PSA3_HUMAN Proteasome subunit alpha type-3 OS=Homo sapiens OX=9606 GN=PSMA3 PE=1 SV=2 1 62.7325 0.00106257 101.53 61.036 62.732 1 86.2877 0.00291552 86.288 1 101.532 0.00106257 101.53 1 82.7744 0.00423092 82.774 1 98.3681 0.00136123 98.368 1 62.8909 0.0180005 62.891 1 62.7325 0.0182111 62.732 1 M EGSNKRLFNVDRHVGMAVAGLLADARSLADI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX HVGM(1)AVAGLLADAR HVGM(62.73)AVAGLLADAR 4 3 -2.0473 12239000 12239000 0 0 4.3033 0 856270 2860700 0 0 1983000 1074600 2159600 3304900 NaN NaN 1.0058 NaN NaN NaN NaN NaN NaN 0 0 0 856270 0 0 2860700 0 0 0 0 0 0 0 0 1983000 0 0 1074600 0 0 2159600 0 0 3304900 0 0 422 683 76 76 2021 2304 6643;6644;6645;6646;6647;6648 6989;6990;6991;6992;6993;6994 6648 6994 20190902_JH_WT_Ubi_3 9238 6646 6992 20190821_JH_WT_Ubi 7565 6646 6992 20190821_JH_WT_Ubi 7565 sp|P25789|PSA4_HUMAN;sp|P25789-2|PSA4_HUMAN 174;103 sp|P25789|PSA4_HUMAN sp|P25789|PSA4_HUMAN sp|P25789|PSA4_HUMAN Proteasome subunit alpha type-4 OS=Homo sapiens OX=9606 GN=PSMA4 PE=1 SV=1;sp|P25789-2|PSA4_HUMAN Isoform 2 of Proteasome subunit alpha type-4 OS=Homo sapiens OX=9606 GN=PSMA4 1 97.3525 7.49715E-05 97.352 55.823 97.352 1 97.3525 7.49715E-05 97.352 1 M WKATCIGNNSAAAVSMLKQDYKEGEMTLKSA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX ATCIGNNSAAAVSM(1)LKQDYK ATCIGNNSAAAVSM(97.35)LKQDYK 14 3 0.010235 3614900 3614900 0 0 0.61952 0 3614900 0 0 0 0 0 0 0 NaN 1.3609 NaN NaN NaN 0 NaN NaN NaN 0 0 0 3614900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 423 684 174 174 295 345 993 1076 993 1076 20190821_JH_MUT_Ubi 6833 993 1076 20190821_JH_MUT_Ubi 6833 993 1076 20190821_JH_MUT_Ubi 6833 sp|P26006|ITA3_HUMAN 1037 sp|P26006|ITA3_HUMAN sp|P26006|ITA3_HUMAN sp|P26006|ITA3_HUMAN Integrin alpha-3 OS=Homo sapiens OX=9606 GN=ITGA3 PE=1 SV=5 1 69.216 0.0265384 69.216 31.276 69.216 1 69.216 0.0265384 69.216 1 M ARTRALYEAKRQKAEMKSQPSETERLTDDY_ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX AEM(1)KSQPSETER AEM(69.22)KSQPSETER 3 3 -0.4289 8851000 8851000 0 0 NaN 0 0 8851000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8851000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 424 685 1037 1037 92 106 339 372 339 372 20190821_JH_WT_Ubi 2287 339 372 20190821_JH_WT_Ubi 2287 339 372 20190821_JH_WT_Ubi 2287 sp|P26006|ITA3_HUMAN;sp|P26006-1|ITA3_HUMAN 278;278 sp|P26006|ITA3_HUMAN sp|P26006|ITA3_HUMAN sp|P26006|ITA3_HUMAN Integrin alpha-3 OS=Homo sapiens OX=9606 GN=ITGA3 PE=1 SV=5;sp|P26006-1|ITA3_HUMAN Isoform 2 of Integrin alpha-3 OS=Homo sapiens OX=9606 GN=ITGA3 1 103.767 2.80394E-10 141.06 90.052 103.77 1 141.061 2.80394E-10 141.06 1 95.2362 0.000474903 95.236 1 103.767 0.000185274 103.77 1 M PKNITIVTGAPRHRHMGAVFLLSQEAGGDLR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP HM(1)GAVFLLSQEAGGDLR HM(103.77)GAVFLLSQEAGGDLR 2 3 -0.29189 31029000 31029000 0 0 NaN 0 0 15479000 0 0 0 0 8643300 6907000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 15479000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8643300 0 0 6907000 0 0 425 685 278 278 1949 2215 6329;6330;6331 6660;6661;6662 6331 6662 20190902_JH_WT_Ubi_3 10541 6329 6660 20190821_JH_WT_Ubi 8975 6329 6660 20190821_JH_WT_Ubi 8975 sp|P26038|MOES_HUMAN 467 sp|P26038|MOES_HUMAN sp|P26038|MOES_HUMAN sp|P26038|MOES_HUMAN Moesin OS=Homo sapiens OX=9606 GN=MSN PE=1 SV=3 1 113.749 5.45336E-73 198.85 171.31 113.75 1 85.2915 1.21347E-26 145.19 1 58.9447 0.000542552 58.945 1 198.85 5.45336E-73 198.85 1 102.752 9.04097E-11 102.75 1 97.3659 3.39038E-08 97.366 1 133.911 1.03839E-21 133.91 1 111.499 6.84861E-16 111.5 1 45.22 8.23982E-32 149.91 1 113.749 1.55407E-21 130.62 1 M VQEDLEKTRAELKTAMSTPHVAEPAENEQDE X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP TAM(1)STPHVAEPAENEQDEQDENGAEASADLR TAM(113.75)STPHVAEPAENEQDEQDENGAEASADLR 3 3 -0.18908 46511000 46511000 0 0 8.5791 1831200 0 4564700 1690000 0 1164300 989150 6856000 7486500 NaN 0 NaN NaN NaN NaN NaN 2.5129 3.4633 1831200 0 0 0 0 0 4564700 0 0 1690000 0 0 0 0 0 1164300 0 0 989150 0 0 6856000 0 0 7486500 0 0 426 686 467 467 91;4260 105;4835;4836 338;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490;13491 371;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154 13491 14154 20190902_JH_WT_Ubi_3 7878 13488 14150 20190821_JH_WT_Ubi 6196 13488 14150 20190821_JH_WT_Ubi 6196 sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN 175;175;175 sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=1;sp|P26599-2|PTBP1_HUMAN Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1;sp|P26599-3|PTBP1_HUMAN Isoform 3 of Polypy 1 77.6274 3.55807E-08 77.627 49.446 77.627 1 63.3278 1.21046E-05 63.328 1 41.6729 0.00210365 41.673 1 51.1903 0.000122879 51.19 1 77.6274 3.55807E-08 77.627 1 51.5329 9.36059E-05 51.533 2 M GNLALAASAAAVDAGMAMAGQSPVLRIIVEN X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX AQAALQAVNSVQSGNLALAASAAAVDAGM(1)AM(1)AGQSPVLR AQAALQAVNSVQSGNLALAASAAAVDAGM(77.63)AM(77.63)AGQSPVLR 29 3 3.8547 3034700 0 3034700 0 NaN 471810 706610 0 0 0 698990 0 0 712270 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 471810 0 0 706610 0 0 0 0 0 0 0 0 0 0 0 698990 0 0 0 0 0 0 0 0 712270 0 427 690 175 175 247 288;289 834;835;836;837;838 908;909;910;911;912;913;914;915 838 915 20190902_JH_MUT_Ubi_3 13055 838 915 20190902_JH_MUT_Ubi_3 13055 838 915 20190902_JH_MUT_Ubi_3 13055 sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN 177;177;177 sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=1;sp|P26599-2|PTBP1_HUMAN Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1;sp|P26599-3|PTBP1_HUMAN Isoform 3 of Polypy 1 77.6274 3.55807E-08 77.627 49.446 77.627 1 63.3278 1.21046E-05 63.328 1 41.6729 0.00210365 41.673 1 51.1903 0.000122879 51.19 1 77.6274 3.55807E-08 77.627 1 51.5329 9.36059E-05 51.533 2 M LALAASAAAVDAGMAMAGQSPVLRIIVENLF X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX AQAALQAVNSVQSGNLALAASAAAVDAGM(1)AM(1)AGQSPVLR AQAALQAVNSVQSGNLALAASAAAVDAGM(77.63)AM(77.63)AGQSPVLR 31 3 3.8547 3034700 0 3034700 0 NaN 471810 706610 0 0 0 698990 0 0 712270 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 471810 0 0 706610 0 0 0 0 0 0 0 0 0 0 0 698990 0 0 0 0 0 0 0 0 712270 0 428 690 177 177 247 288;289 834;835;836;837;838 908;909;910;911;912;913;914;915 838 915 20190902_JH_MUT_Ubi_3 13055 838 915 20190902_JH_MUT_Ubi_3 13055 838 915 20190902_JH_MUT_Ubi_3 13055 sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN 493;512;519 sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=1;sp|P26599-2|PTBP1_HUMAN Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1;sp|P26599-3|PTBP1_HUMAN Isoform 3 of Polypy 1 51.9626 0.0268528 51.963 29.723 51.963 1 51.9626 0.0268528 51.963 2 M GGVVKGFKFFQKDRKMALIQMGSVEEAVQAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ALIQM(1)GSVEEAVQALIDLHNHDLGENHHLR M(51.96)ALIQM(51.96)GSVEEAVQALIDLHNHDLGENHHLR 1 6 0.71813 5864900 0 5864900 0 1.4926 0 0 0 0 0 0 0 0 5864900 NaN 0 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5864900 0 429 690 493 493 2878 3267 9279 9765 9279 9765 20190902_JH_WT_Ubi_3 13262 9279 9765 20190902_JH_WT_Ubi_3 13262 9279 9765 20190902_JH_WT_Ubi_3 13262 sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN 498;517;524 sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=1;sp|P26599-2|PTBP1_HUMAN Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1;sp|P26599-3|PTBP1_HUMAN Isoform 3 of Polypy 1 51.9626 0.0268528 51.963 29.723 51.963 1 51.9626 0.0268528 51.963 2 M GFKFFQKDRKMALIQMGSVEEAVQALIDLHN X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP M(1)ALIQM(1)GSVEEAVQALIDLHNHDLGENHHLR M(51.96)ALIQM(51.96)GSVEEAVQALIDLHNHDLGENHHLR 6 6 0.71813 5864900 0 5864900 0 1.4926 0 0 0 0 0 0 0 0 5864900 NaN 0 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5864900 0 430 690 498 498 2878 3267 9279 9765 9279 9765 20190902_JH_WT_Ubi_3 13262 9279 9765 20190902_JH_WT_Ubi_3 13262 9279 9765 20190902_JH_WT_Ubi_3 13262 sp|P26641|EF1G_HUMAN;sp|P26641-2|EF1G_HUMAN 263;313 sp|P26641|EF1G_HUMAN sp|P26641|EF1G_HUMAN sp|P26641|EF1G_HUMAN Elongation factor 1-gamma OS=Homo sapiens OX=9606 GN=EEF1G PE=1 SV=3;sp|P26641-2|EF1G_HUMAN Isoform 2 of Elongation factor 1-gamma OS=Homo sapiens OX=9606 GN=EEF1G 1 102.792 2.56047E-07 108.47 76.375 102.79 1 108.467 2.56047E-07 108.47 1 102.792 7.46395E-07 102.79 1 M RKEEKKAAAPAPEEEMDECEQALAAEPKAKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPXXX AAAPAPEEEM(1)DECEQALAAEPK AAAPAPEEEM(102.79)DECEQALAAEPK 10 3 0.41622 4619400 4619400 0 0 NaN 0 0 0 0 0 0 0 2998600 1620700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2998600 0 0 1620700 0 0 431 691 263 263 7 9 40;41 47;48 41 48 20190902_JH_WT_Ubi_3 8933 40 47 20190902_JH_WT_Ubi_2 9366 40 47 20190902_JH_WT_Ubi_2 9366 sp|P26641|EF1G_HUMAN;sp|P26641-2|EF1G_HUMAN 345;395 sp|P26641|EF1G_HUMAN sp|P26641|EF1G_HUMAN sp|P26641|EF1G_HUMAN Elongation factor 1-gamma OS=Homo sapiens OX=9606 GN=EEF1G PE=1 SV=3;sp|P26641-2|EF1G_HUMAN Isoform 2 of Elongation factor 1-gamma OS=Homo sapiens OX=9606 GN=EEF1G 0.998644 28.6707 0.0152525 49.592 19.568 49.592 0.998644 28.6707 0.0152525 49.592 1 M EELTQTFMSCNLITGMFQRLDKLRKNAFASV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX FPEELTQTFM(0.001)SCNLITGM(0.999)FQRLDK FPEELTQTFM(-28.67)SCNLITGM(28.67)FQRLDK 18 3 1.598 1735700 1735700 0 0 NaN 0 0 0 0 0 0 0 1735700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1735700 0 0 0 0 0 432 691 345 345 1278 1447 4050 4258 4050 4258 20190902_JH_WT_Ubi_2 6301 4050 4258 20190902_JH_WT_Ubi_2 6301 4050 4258 20190902_JH_WT_Ubi_2 6301 sp|P26885|FKBP2_HUMAN 54 sp|P26885|FKBP2_HUMAN sp|P26885|FKBP2_HUMAN sp|P26885|FKBP2_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP2 OS=Homo sapiens OX=9606 GN=FKBP2 PE=1 SV=2 1 91.6583 0.00713953 91.658 63.745 91.658 1 74.8411 0.01531 74.841 1 91.6583 0.00713953 91.658 1 M VDHCPIKSRKGDVLHMHYTGKLEDGTEFDSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPXXXXXXXXXX GDVLHM(1)HYTGK GDVLHM(91.66)HYTGK 6 3 0.91477 9109200 9109200 0 0 NaN 0 0 3350400 0 0 0 0 5758800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3350400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5758800 0 0 0 0 0 433 692 54 54 1413 1608 4499;4500 4725;4726 4500 4726 20190902_JH_WT_Ubi_2 4960 4500 4726 20190902_JH_WT_Ubi_2 4960 4500 4726 20190902_JH_WT_Ubi_2 4960 sp|P27105|STOM_HUMAN;sp|P27105-2|STOM_HUMAN 275;110 sp|P27105|STOM_HUMAN sp|P27105|STOM_HUMAN sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane protein OS=Homo sapiens OX=9606 GN=STOM PE=1 SV=3;sp|P27105-2|STOM_HUMAN Isoform 2 of Erythrocyte band 7 integral membrane protein OS=Homo sapiens OX=9606 GN=STOM 1 141.637 1.40533E-39 188.54 158.05 141.64 1 173.492 9.16612E-31 173.49 1 188.543 1.40533E-39 188.54 1 79.3319 0.00677578 79.332 1 184.201 2.34852E-39 184.2 1 141.637 8.66811E-14 141.64 1 M AAEKNSTIVFPLPIDMLQGIIGAKHSHLG__ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPXXXXXXX NSTIVFPLPIDM(1)LQGIIGAK NSTIVFPLPIDM(141.64)LQGIIGAK 12 3 0.03849 28218000 28218000 0 0 28.766 3815000 9713700 0 0 0 5684100 9004800 0 0 NaN 9.9025 NaN NaN NaN NaN NaN NaN NaN 3815000 0 0 9713700 0 0 0 0 0 0 0 0 0 0 0 5684100 0 0 9004800 0 0 0 0 0 0 0 0 434 693 275 275 3219 3678 10359;10360;10361;10362;10363 10902;10903;10904;10905;10906 10363 10906 20190902_JH_MUT_Ubi_3 13985 10361 10904 20190821_JH_MUT_Ubi 14849 10361 10904 20190821_JH_MUT_Ubi 14849 sp|P27348|1433T_HUMAN;sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN;sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN 160;160;162;160;85 sp|P27348|1433T_HUMAN;sp|P31946-2|1433B_HUMAN;sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN sp|P63104|1433Z_HUMAN sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens OX=9606 GN=YWHAQ PE=1 SV=1;sp|P31946-2|1433B_HUMAN Isoform Short of 14-3-3 protein beta/alpha OS=Homo sapiens OX=9606 GN=YWHAB;sp|P31946|1433B_HUMAN 14-3-3 protein beta/alpha OS=Homo sapiens OX=960 1 62.1662 0.0305575 62.166 28.291 62.166 1 62.1662 0.0305575 62.166 1 M SQGAYQEAFDISKKEMQPTHPIRLGLALNFS;SQQAYQEAFEISKKEMQPTHPIRLGLALNFS X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPXXXXXXXX KEM(1)QPTHPIR KEM(62.17)QPTHPIR 3 3 0.70789 2676200 2676200 0 0 NaN 0 0 2676200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2676200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 435 695;749;1078;1079 160;160;160;85 160 2335 2656 7684 8082 7684 8082 20190821_JH_WT_Ubi 2255 7684 8082 20190821_JH_WT_Ubi 2255 7684 8082 20190821_JH_WT_Ubi 2255 sp|P27348|1433T_HUMAN 22 sp|P27348|1433T_HUMAN sp|P27348|1433T_HUMAN sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens OX=9606 GN=YWHAQ PE=1 SV=1 1 75.8681 3.38558E-06 91.166 58.618 75.868 1 91.1655 3.38558E-06 91.166 1 75.8681 0.00181322 75.868 1;2 M IQKAKLAEQAERYDDMATCMKAVTEQGAELS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP YDDM(1)ATCM(1)KAVTEQGAELSNEER YDDM(75.87)ATCM(75.87)KAVTEQGAELSNEER 4 3 4.3553 804760 424790 379970 0 NaN 0 804760 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 424790 379970 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 436 695 22 22 5112 5812;5813 16485;16486;16487 17326;17327;17328 16486 17327 20190902_JH_WT_Ubi_3 7753 16485 17326 20190821_JH_MUT_Ubi 5558 16485 17326 20190821_JH_MUT_Ubi 5558 sp|P27348|1433T_HUMAN 26 sp|P27348|1433T_HUMAN sp|P27348|1433T_HUMAN sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens OX=9606 GN=YWHAQ PE=1 SV=1 1 75.8681 3.38558E-06 91.166 58.618 75.868 1 91.1655 3.38558E-06 91.166 1 75.8681 0.00181322 75.868 2 M KLAEQAERYDDMATCMKAVTEQGAELSNEER X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP YDDM(1)ATCM(1)KAVTEQGAELSNEER YDDM(75.87)ATCM(75.87)KAVTEQGAELSNEER 8 3 4.3553 379970 0 379970 0 NaN 0 379970 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 379970 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 437 695 26 26 5112 5812;5813 16485;16486 17326;17327 16486 17327 20190902_JH_WT_Ubi_3 7753 16485 17326 20190821_JH_MUT_Ubi 5558 16485 17326 20190821_JH_MUT_Ubi 5558 sp|P27448-8|MARK3_HUMAN;sp|P27448-6|MARK3_HUMAN;sp|P27448-3|MARK3_HUMAN;sp|P27448-4|MARK3_HUMAN;sp|P27448-2|MARK3_HUMAN;sp|P27448|MARK3_HUMAN;sp|P27448-7|MARK3_HUMAN 423;486;502;502;525;502;509 sp|P27448-8|MARK3_HUMAN sp|P27448-8|MARK3_HUMAN sp|P27448-8|MARK3_HUMAN Isoform 7 of MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens OX=9606 GN=MARK3;sp|P27448-6|MARK3_HUMAN Isoform 5 of MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens OX=9606 GN=MARK3;sp|P27448-3|MARK3_HUMAN Is 1 67.6459 0.0167949 67.646 17.653 67.646 1 67.6459 0.0167949 67.646 1 M KKSSTVPSSNTASGGMTRRNTYVCSERTTAD GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX KKSSTVPSSNTASGGM(1)TR KKSSTVPSSNTASGGM(67.65)TR 16 3 2.2697 1089300 1089300 0 0 NaN 0 0 0 0 0 0 0 1089300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1089300 0 0 0 0 0 438 696 423 423 2375 2701 7794 8196 7794 8196 20190902_JH_WT_Ubi_2 15748 7794 8196 20190902_JH_WT_Ubi_2 15748 7794 8196 20190902_JH_WT_Ubi_2 15748 sp|P27449|VATL_HUMAN 44 sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens OX=9606 GN=ATP6V0C PE=1 SV=1 1 54.4024 0.0106139 54.402 23.544 54.402 1 54.4024 0.0106139 54.402 3 M GAAYGTAKSGTGIAAMSVMRPEQIMKSIIPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPXXXXX SGTGIAAM(1)SVM(1)RPEQIM(1)K SGTGIAAM(54.4)SVM(54.4)RPEQIM(54.4)K 8 3 1.9935 2427700 0 0 2427700 NaN 0 0 0 0 0 0 0 0 2427700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2427700 439 697 44 44 3937 4475 12489 13102;13103 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 sp|P27449|VATL_HUMAN 47 sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens OX=9606 GN=ATP6V0C PE=1 SV=1 1 54.4024 0.0106139 54.402 23.544 54.402 1 54.4024 0.0106139 54.402 3 M YGTAKSGTGIAAMSVMRPEQIMKSIIPVVMA X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPXXXXXXXX SGTGIAAM(1)SVM(1)RPEQIM(1)K SGTGIAAM(54.4)SVM(54.4)RPEQIM(54.4)K 11 3 1.9935 2427700 0 0 2427700 NaN 0 0 0 0 0 0 0 0 2427700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2427700 440 697 47 47 3937 4475 12489 13102;13103 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 sp|P27449|VATL_HUMAN 53 sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN sp|P27449|VATL_HUMAN V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens OX=9606 GN=ATP6V0C PE=1 SV=1 1 54.4024 0.0106139 54.402 23.544 54.402 1 54.4024 0.0106139 54.402 3 M GTGIAAMSVMRPEQIMKSIIPVVMAGIIAIY X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SGTGIAAM(1)SVM(1)RPEQIM(1)K SGTGIAAM(54.4)SVM(54.4)RPEQIM(54.4)K 17 3 1.9935 2427700 0 0 2427700 NaN 0 0 0 0 0 0 0 0 2427700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2427700 441 697 53 53 3937 4475 12489 13102;13103 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 12489 13102 20190902_JH_WT_Ubi_3 6792 sp|P27708|PYR1_HUMAN 971 sp|P27708|PYR1_HUMAN sp|P27708|PYR1_HUMAN sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens OX=9606 GN=CAD PE=1 SV=3 0.857145 7.48248 0.0117414 58.373 39.163 58.373 0.857145 7.48248 0.0117414 58.373 2 M VGCIQQLRKMGYKTIMVNYNPETVSTDYDMC X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP M(0.143)GYKTIM(0.857)VNYNPETVSTDYDM(1)CDR M(-7.48)GYKTIM(7.48)VNYNPETVSTDYDM(55.37)CDR 7 3 3.3415 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442 701 971 971 2921 3317 9406 9900 9406 9900 20190902_JH_MUT_Ubi_3 9474 9406 9900 20190902_JH_MUT_Ubi_3 9474 9406 9900 20190902_JH_MUT_Ubi_3 9474 sp|P27708|PYR1_HUMAN 985 sp|P27708|PYR1_HUMAN sp|P27708|PYR1_HUMAN sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens OX=9606 GN=CAD PE=1 SV=3 0.999998 55.3685 0.0117414 58.373 39.163 58.373 0.999998 55.3685 0.0117414 58.373 2 M IMVNYNPETVSTDYDMCDRLYFDEISFEVVM X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX M(0.143)GYKTIM(0.857)VNYNPETVSTDYDM(1)CDR M(-7.48)GYKTIM(7.48)VNYNPETVSTDYDM(55.37)CDR 21 3 3.3415 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 443 701 985 985 2921 3317 9406 9900 9406 9900 20190902_JH_MUT_Ubi_3 9474 9406 9900 20190902_JH_MUT_Ubi_3 9474 9406 9900 20190902_JH_MUT_Ubi_3 9474 sp|P27797|CALR_HUMAN 257 sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN Calreticulin OS=Homo sapiens OX=9606 GN=CALR PE=1 SV=1 1 72.9898 0.000368313 78.531 59.971 72.99 1 72.6765 0.00117118 72.676 1 78.5309 0.000368313 78.531 1 72.9898 0.00109059 72.99 1 M IPDPDAKKPEDWDEEMDGEWEPPVIQNPEYK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP KPEDWDEEM(1)DGEWEPPVIQNPEYK KPEDWDEEM(72.99)DGEWEPPVIQNPEYK 9 3 1.3666 16894000 16894000 0 0 3.5401 0 0 8741400 0 0 0 0 4710200 3442500 NaN NaN 1.8317 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8741400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4710200 0 0 3442500 0 0 444 702 257 257 2417 2749 7917;7918;7919 8327;8328;8329 7919 8329 20190902_JH_WT_Ubi_3 11969 7918 8328 20190902_JH_WT_Ubi_2 12460 7918 8328 20190902_JH_WT_Ubi_2 12460 sp|P27797|CALR_HUMAN 122 sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN Calreticulin OS=Homo sapiens OX=9606 GN=CALR PE=1 SV=1 1 50.8018 0.00152656 50.802 27.231 50.802 1 50.8018 0.00152656 50.802 2 M GGYVKLFPNSLDQTDMHGDSEYNIMFGPDIC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP LFPNSLDQTDM(1)HGDSEYNIM(1)FGPDICGPGTK LFPNSLDQTDM(50.8)HGDSEYNIM(50.8)FGPDICGPGTK 11 3 1.5048 1572600 0 1572600 0 NaN 0 0 0 0 0 0 0 1572600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1572600 0 0 0 0 445 702 122 122 2594 2948 8419 8852 8419 8852 20190902_JH_WT_Ubi_2 13601 8419 8852 20190902_JH_WT_Ubi_2 13601 8419 8852 20190902_JH_WT_Ubi_2 13601 sp|P27797|CALR_HUMAN 131 sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN sp|P27797|CALR_HUMAN Calreticulin OS=Homo sapiens OX=9606 GN=CALR PE=1 SV=1 1 50.8018 0.00152656 50.802 27.231 50.802 1 50.8018 0.00152656 50.802 2 M SLDQTDMHGDSEYNIMFGPDICGPGTKKVHV X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX LFPNSLDQTDM(1)HGDSEYNIM(1)FGPDICGPGTK LFPNSLDQTDM(50.8)HGDSEYNIM(50.8)FGPDICGPGTK 20 3 1.5048 1572600 0 1572600 0 NaN 0 0 0 0 0 0 0 1572600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1572600 0 0 0 0 446 702 131 131 2594 2948 8419 8852 8419 8852 20190902_JH_WT_Ubi_2 13601 8419 8852 20190902_JH_WT_Ubi_2 13601 8419 8852 20190902_JH_WT_Ubi_2 13601 sp|P27816-2|MAP4_HUMAN;sp|P27816-6|MAP4_HUMAN;sp|P27816|MAP4_HUMAN 478;478;478 sp|P27816-2|MAP4_HUMAN sp|P27816-2|MAP4_HUMAN sp|P27816-2|MAP4_HUMAN Isoform 2 of Microtubule-associated protein 4 OS=Homo sapiens OX=9606 GN=MAP4;sp|P27816-6|MAP4_HUMAN Isoform 6 of Microtubule-associated protein 4 OS=Homo sapiens OX=9606 GN=MAP4;sp|P27816|MAP4_HUMAN Microtubule-associated protein 4 1 96.6404 0.00429586 96.64 36.243 96.64 1 96.6404 0.00429586 96.64 M DKALPLEAEVAPVKDMAQLPETEIAPAKDVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX DM(1)AQLPETEIAPAK DM(96.64)AQLPETEIAPAK 2 2 -1.7507 2714700 2714700 0 0 NaN 0 0 0 0 0 0 0 0 2714700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2714700 0 0 447 703 478 478 616 707 1941 2060 1941 2060 20190902_JH_WT_Ubi_3 9611 1941 2060 20190902_JH_WT_Ubi_3 9611 1941 2060 20190902_JH_WT_Ubi_3 9611 sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN 199;207 sp|P29401|TKT_HUMAN sp|P29401|TKT_HUMAN sp|P29401|TKT_HUMAN Transketolase OS=Homo sapiens OX=9606 GN=TKT PE=1 SV=3;sp|P29401-2|TKT_HUMAN Isoform 2 of Transketolase OS=Homo sapiens OX=9606 GN=TKT 1 57.7875 0.000703219 84.41 58.82 57.788 1 84.4097 0.000703219 84.41 1 57.7875 0.0124146 57.788 1 M INRLGQSDPAPLQHQMDIYQKRCEAFGWHAI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPXXXXXXXXXX LGQSDPAPLQHQM(1)DIYQK LGQSDPAPLQHQM(57.79)DIYQK 13 3 -0.62785 22810000 22810000 0 0 NaN 0 0 0 0 0 0 0 12825000 9984300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12825000 0 0 9984300 0 0 448 715 199 199 2627 2986 8522;8523 8963;8964 8523 8964 20190902_JH_WT_Ubi_3 7617 8522 8963 20190902_JH_WT_Ubi_2 8000 8522 8963 20190902_JH_WT_Ubi_2 8000 sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN 266;274 sp|P29401|TKT_HUMAN sp|P29401|TKT_HUMAN sp|P29401|TKT_HUMAN Transketolase OS=Homo sapiens OX=9606 GN=TKT PE=1 SV=3;sp|P29401-2|TKT_HUMAN Isoform 2 of Transketolase OS=Homo sapiens OX=9606 GN=TKT 1 90.7058 6.63215E-11 145.69 88.272 90.706 1 145.686 6.63215E-11 145.69 1 114.276 1.83365E-05 114.28 1 90.7058 0.000692448 90.706 1 89.5016 0.000750269 89.502 1 113.14 2.06623E-05 113.14 1 M VEDKESWHGKPLPKNMAEQIIQEIYSQIQSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)AEQIIQEIYSQIQSK NM(90.71)AEQIIQEIYSQIQSK 2 3 0.36313 8871400 8871400 0 0 NaN 3259500 1372300 2313600 0 0 1124300 801690 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3259500 0 0 1372300 0 0 2313600 0 0 0 0 0 0 0 0 1124300 0 0 801690 0 0 0 0 0 0 0 0 449 715 266 266 3157 3607 10154;10155;10156;10157;10158 10691;10692;10693;10694;10695 10158 10695 20190821_JH_WT_Ubi 15330 10154 10691 20190821_JH_EV_Ubi 14403 10154 10691 20190821_JH_EV_Ubi 14403 sp|P30041|PRDX6_HUMAN 127 sp|P30041|PRDX6_HUMAN sp|P30041|PRDX6_HUMAN sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens OX=9606 GN=PRDX6 PE=1 SV=3 1 73.4995 0.0195296 82.261 29.682 73.499 1 82.2607 0.0195296 82.261 1 73.4995 0.0266911 73.499 1 M ILLGMLDPAEKDEKGMPVTARVVFVFGPDKK X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX DEKGM(1)PVTAR DEKGM(73.5)PVTAR 5 3 1.2222 2189000 2189000 0 0 NaN 1300300 888770 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1300300 0 0 888770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 450 720 127 127 433 507 1392;1393 1483;1484 1393 1484 20190821_JH_MUT_Ubi 2578 1392 1483 20190821_JH_EV_Ubi 2865 1392 1483 20190821_JH_EV_Ubi 2865 sp|P30041|PRDX6_HUMAN 188 sp|P30041|PRDX6_HUMAN sp|P30041|PRDX6_HUMAN sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens OX=9606 GN=PRDX6 PE=1 SV=3 1 49.5594 0.000103365 111.79 57.307 49.559 1 55.9751 0.0213869 55.975 1 49.5594 0.0219415 49.559 1 111.793 0.000103365 111.79 1 M KRVATPVDWKDGDSVMVLPTIPEEEAKKLFP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPXXX DGDSVM(1)VLPTIPEEEAKK DGDSVM(49.56)VLPTIPEEEAKK 6 3 -1.8131 12017000 12017000 0 0 NaN 0 0 0 0 0 0 0 1687000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1687000 0 0 0 0 0 451 720 188 188 476;477 554;555 1529;1530;1531 1622;1623;1624 1531 1624 20190902_JH_WT_Ubi_2 10902 1529 1622 20190902_JH_WT_Ubi_3 12436 1529 1622 20190902_JH_WT_Ubi_3 12436 sp|P30043|BLVRB_HUMAN 150 sp|P30043|BLVRB_HUMAN sp|P30043|BLVRB_HUMAN sp|P30043|BLVRB_HUMAN Flavin reductase (NADPH) OS=Homo sapiens OX=9606 GN=BLVRB PE=1 SV=3 1 50.4323 7.67965E-13 121.33 90.563 50.432 1 121.329 7.67965E-13 121.33 1 50.4323 0.00761278 50.432 1 M MHKVLRESGLKYVAVMPPHIGDQPLTGAYTV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP YVAVM(1)PPHIGDQPLTGAYTVTLDGR YVAVM(50.43)PPHIGDQPLTGAYTVTLDGR 5 3 -2.5254 7985600 7985600 0 0 0.55226 3967900 4017700 0 0 0 0 0 0 0 NaN 1.1073 0 NaN NaN NaN 0 NaN NaN 3967900 0 0 4017700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452 722 150 150 5216 5938 16838;16839 17701;17702 16839 17702 20190821_JH_MUT_Ubi 11032 16838 17701 20190821_JH_EV_Ubi 11592 16838 17701 20190821_JH_EV_Ubi 11592 sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN 138;156 sp|P30048-2|PRDX3_HUMAN sp|P30048-2|PRDX3_HUMAN sp|P30048-2|PRDX3_HUMAN Isoform 2 of Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens OX=9606 GN=PRDX3;sp|P30048|PRDX3_HUMAN Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens OX=9606 GN=PRDX3 PE=1 SV=3 1 56.7737 0.0160583 56.774 26.127 56.774 1 56.7737 0.0160583 56.774 1 M LAWINTPRKNGGLGHMNIALLSDLTKQISRD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPXXXXX NGGLGHM(1)NIALLSDLTK NGGLGHM(56.77)NIALLSDLTK 7 3 0.54251 2110000 2110000 0 0 0.48045 0 0 0 0 0 0 0 0 2110000 0 NaN 0 NaN NaN 0 NaN NaN 1.0775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2110000 0 0 453 724 138 138 3067 3508 9899 10430 9899 10430 20190902_JH_WT_Ubi_3 11063 9899 10430 20190902_JH_WT_Ubi_3 11063 9899 10430 20190902_JH_WT_Ubi_3 11063 sp|P30086|PEBP1_HUMAN 92 sp|P30086|PEBP1_HUMAN sp|P30086|PEBP1_HUMAN sp|P30086|PEBP1_HUMAN Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens OX=9606 GN=PEBP1 PE=1 SV=3 1 108.431 0.00170534 108.43 49.802 108.43 1 108.431 0.00170534 108.43 1 M KDPKYREWHHFLVVNMKGNDISSGTVLSDYV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX EWHHFLVVNM(1)K EWHHFLVVNM(108.43)K 10 3 1.6404 32365000 32365000 0 0 1.4601 0 0 0 0 0 0 0 32365000 0 NaN NaN 0 NaN NaN NaN NaN 5.9804 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32365000 0 0 0 0 0 454 729 92 92 1156 1304 3684 3878 3684 3878 20190902_JH_WT_Ubi_2 8080 3684 3878 20190902_JH_WT_Ubi_2 8080 3684 3878 20190902_JH_WT_Ubi_2 8080 sp|P30101|PDIA3_HUMAN 247 sp|P30101|PDIA3_HUMAN sp|P30101|PDIA3_HUMAN sp|P30101|PDIA3_HUMAN Protein disulfide-isomerase A3 OS=Homo sapiens OX=9606 GN=PDIA3 PE=1 SV=4 1 112.5 1.97558E-08 126.63 56.1 112.5 1 102.389 0.000101136 102.39 1 68.9778 0.00431898 68.978 1 126.629 1.97558E-08 126.63 1 112.5 7.36197E-06 112.5 1 M IKKFIQENIFGICPHMTEDNKDLIQGKDLLI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPXXXXXXXXXX FIQENIFGICPHM(1)TEDNK FIQENIFGICPHM(112.5)TEDNK 13 3 0.27592 21599000 21599000 0 0 7.0321 0 0 7752800 0 0 1435800 0 7615400 4795100 NaN NaN NaN NaN NaN NaN NaN NaN 1.5612 0 0 0 0 0 0 7752800 0 0 0 0 0 0 0 0 1435800 0 0 0 0 0 7615400 0 0 4795100 0 0 455 730 247 247 1225 1382 3881;3882;3883;3884 4085;4086;4087;4088 3884 4088 20190902_JH_WT_Ubi_3 10945 3883 4087 20190902_JH_WT_Ubi_2 11464 3883 4087 20190902_JH_WT_Ubi_2 11464 sp|P30405|PPIF_HUMAN 142 sp|P30405|PPIF_HUMAN sp|P30405|PPIF_HUMAN sp|P30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Homo sapiens OX=9606 GN=PPIF PE=1 SV=1 1 66.3718 0.00136044 66.372 35.058 66.372 1 44.7105 0.0325253 44.711 1 66.3718 0.00136044 66.372 1 M DENFTLKHVGPGVLSMANAGPNTNGSQFFIC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP HVGPGVLSM(1)ANAGPNTNGSQFFICTIK HVGPGVLSM(66.37)ANAGPNTNGSQFFICTIK 9 3 -0.17943 7015100 7015100 0 0 NaN 0 0 3435700 0 0 0 0 3579500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3435700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3579500 0 0 0 0 0 456 732 142 142 2023 2307 6657;6658 7003;7004;7005 6658 7004 20190902_JH_WT_Ubi_2 13040 6658 7004 20190902_JH_WT_Ubi_2 13040 6658 7004 20190902_JH_WT_Ubi_2 13040 sp|P30566-2|PUR8_HUMAN;sp|P30566|PUR8_HUMAN 89;89 sp|P30566-2|PUR8_HUMAN sp|P30566-2|PUR8_HUMAN sp|P30566-2|PUR8_HUMAN Isoform 2 of Adenylosuccinate lyase OS=Homo sapiens OX=9606 GN=ADSL;sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens OX=9606 GN=ADSL PE=1 SV=2 1 52.5991 0.0154419 56.527 22.251 52.599 1 56.5275 0.0154419 56.527 1 52.5991 0.0192589 52.599 1 M FKMAAEEEKRLRHDVMAHVHTFGHCCPKAAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX HDVM(1)AHVHTFGHCCPK HDVM(52.6)AHVHTFGHCCPK 4 4 0.11373 8424700 8424700 0 0 NaN 0 0 0 0 0 0 0 3754600 4670100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3754600 0 0 4670100 0 0 457 735 89 89 1800 2043 5730;5731 6034;6035 5731 6035 20190902_JH_WT_Ubi_3 4420 5730 6034 20190902_JH_WT_Ubi_2 4528 5730 6034 20190902_JH_WT_Ubi_2 4528 sp|P30626-3|SORCN_HUMAN;sp|P30626-2|SORCN_HUMAN;sp|P30626|SORCN_HUMAN 117;117;132 sp|P30626-3|SORCN_HUMAN sp|P30626-3|SORCN_HUMAN sp|P30626-3|SORCN_HUMAN Isoform 3 of Sorcin OS=Homo sapiens OX=9606 GN=SRI;sp|P30626-2|SORCN_HUMAN Isoform 2 of Sorcin OS=Homo sapiens OX=9606 GN=SRI;sp|P30626|SORCN_HUMAN Sorcin OS=Homo sapiens OX=9606 GN=SRI PE=1 SV=1 1 57.1973 2.90314E-06 116.96 93.883 57.197 1 77.5059 0.00138649 77.506 1 116.956 2.90314E-06 116.96 1 90.7058 0.000292098 90.706 1 57.1973 0.0161475 57.197 1 M SGTVDPQELQKALTTMGFRLSPQAVNSIAKR X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SGTVDPQELQKALTTM(1)GFR SGTVDPQELQKALTTM(57.2)GFR 16 3 0.56712 12359000 12359000 0 0 NaN 0 0 3683200 0 0 1826600 0 2816900 4032000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3683200 0 0 0 0 0 0 0 0 1826600 0 0 0 0 0 2816900 0 0 4032000 0 0 458 736 117 117 3940 4479 12494;12495;12496;12497 13108;13109;13110;13111 12497 13111 20190902_JH_WT_Ubi_3 11916 12494 13108 20190902_JH_MUT_Ubi_2 11654 12494 13108 20190902_JH_MUT_Ubi_2 11654 sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN;sp|P31040-3|SDHA_HUMAN 519;471;374 sp|P31040|SDHA_HUMAN sp|P31040|SDHA_HUMAN sp|P31040|SDHA_HUMAN Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens OX=9606 GN=SDHA PE=1 SV=2;sp|P31040-2|SDHA_HUMAN Isoform 2 of Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sap 1 44.5871 0.0213415 44.587 6.36 44.587 1 44.5871 0.0213415 44.587 1 M GSIRTSELRLSMQKSMQNHAAVFRVGSVLQE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP SM(1)QNHAAVFRVGSVLQEGCGK SM(44.59)QNHAAVFRVGSVLQEGCGK 2 3 -1.9201 5897400 5897400 0 0 NaN 0 0 0 0 0 0 0 0 5897400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5897400 0 0 459 739 519 519 4073 4625 12900 13527 12900 13527 20190902_JH_WT_Ubi_3 12166 12900 13527 20190902_JH_WT_Ubi_3 12166 12900 13527 20190902_JH_WT_Ubi_3 12166 sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN 279;231 sp|P31040|SDHA_HUMAN sp|P31040|SDHA_HUMAN sp|P31040|SDHA_HUMAN Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens OX=9606 GN=SDHA PE=1 SV=2;sp|P31040-2|SDHA_HUMAN Isoform 2 of Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sap 1 133.944 2.37448E-29 166.47 147.77 133.94 1 89.5567 1.33992E-05 89.557 1 148.518 1.00511E-21 148.52 1 118.665 1.13902E-08 118.66 1 141.072 8.45124E-16 141.07 1 166.472 2.37448E-29 166.47 1 133.944 4.654E-12 133.94 1 M FSCTSAHTSTGDGTAMITRAGLPCQDLEFVQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX TYFSCTSAHTSTGDGTAM(1)ITR TYFSCTSAHTSTGDGTAM(133.94)ITR 18 3 -0.177 60776000 60776000 0 0 3.437 0 2025200 9845100 0 0 1959900 4169100 16287000 26489000 NaN NaN 1.6672 NaN NaN NaN NaN 3.2391 3.9247 0 0 0 2025200 0 0 9845100 0 0 0 0 0 0 0 0 1959900 0 0 4169100 0 0 16287000 0 0 26489000 0 0 460 739 279 279 4695 5326 15057;15058;15059;15060;15061;15062 15821;15822;15823;15824;15825;15826;15827 15062 15827 20190902_JH_WT_Ubi_3 7291 15061 15826 20190902_JH_WT_Ubi_2 7679 15061 15826 20190902_JH_WT_Ubi_2 7679 sp|P31327|CPSM_HUMAN;sp|P31327-3|CPSM_HUMAN 462;468 sp|P31327|CPSM_HUMAN sp|P31327|CPSM_HUMAN sp|P31327|CPSM_HUMAN Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Homo sapiens OX=9606 GN=CPS1 PE=1 SV=2;sp|P31327-3|CPSM_HUMAN Isoform 3 of Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Homo sapiens OX=9606 GN=CPS1 0.739627 6.94722 0.0187661 43.523 11.704 43.523 0.739627 6.94722 0.0187661 43.523 M QAVKAMKEENVKTVLMNPNIASVQTNEVGLK X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K) XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPP AM(0.26)KEENVKTVLM(0.74)NPNIASVQTNEVGLK AM(-6.95)KEENVKTVLM(6.95)NPNIASVQTNEVGLK 12 4 2.8081 2585700 2585700 0 0 NaN 2585700 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2585700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 461 741 462 462 229 264 774 844 774 844 20190821_JH_EV_Ubi 11365 774 844 20190821_JH_EV_Ubi 11365 774 844 20190821_JH_EV_Ubi 11365 sp|P31930|QCR1_HUMAN 229 sp|P31930|QCR1_HUMAN sp|P31930|QCR1_HUMAN sp|P31930|QCR1_HUMAN Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens OX=9606 GN=UQCRC1 PE=1 SV=3 1 56.407 0.000301074 84.195 46.167 56.407 1 84.195 0.000301074 84.195 1 56.407 0.010542 56.407 1 M ADLTEYLSTHYKAPRMVLAAAGGVEHQQLLD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VLAAAGGVEHQQLLDLAQK M(56.41)VLAAAGGVEHQQLLDLAQK 1 3 -0.64931 13772000 13772000 0 0 1.0705 0 0 0 0 0 0 0 7455700 6316300 0 0 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7455700 0 0 6316300 0 0 462 744 229 229 2981 3402 9625;9626 10131;10132;10133 9626 10133 20190902_JH_WT_Ubi_3 10489 9625 10131 20190902_JH_WT_Ubi_2 10986 9625 10131 20190902_JH_WT_Ubi_2 10986 sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN 311;312 sp|P31939-2|PUR9_HUMAN sp|P31939-2|PUR9_HUMAN sp|P31939-2|PUR9_HUMAN Isoform 2 of Bifunctional purine biosynthesis protein PURH OS=Homo sapiens OX=9606 GN=ATIC;sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH OS=Homo sapiens OX=9606 GN=ATIC PE=1 SV=3 1 100.115 0.00104375 100.11 68.767 100.11 1 100.115 0.00104375 100.11 1 M TPISAAYARARGADRMSSFGDFVALSDVCDV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)SSFGDFVALSDVCDVPTAK M(100.11)SSFGDFVALSDVCDVPTAK 1 2 1.2299 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 463 746 311 311 2972 3390 9582 10085 9582 10085 20190821_JH_WT_Ubi 13237 9582 10085 20190821_JH_WT_Ubi 13237 9582 10085 20190821_JH_WT_Ubi 13237 sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN 157;158 sp|P31939-2|PUR9_HUMAN sp|P31939-2|PUR9_HUMAN sp|P31939-2|PUR9_HUMAN Isoform 2 of Bifunctional purine biosynthesis protein PURH OS=Homo sapiens OX=9606 GN=ATIC;sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH OS=Homo sapiens OX=9606 GN=ATIC PE=1 SV=3 1 70.4531 0.000757034 72.383 32.997 70.453 1 72.3825 0.000757034 72.383 1 70.4531 0.00105351 70.453 1 M TVVCEPEDYVVVSTEMQSSESKDTSLETRRQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX VTVVCEPEDYVVVSTEM(1)QSSESK VTVVCEPEDYVVVSTEM(70.45)QSSESK 17 3 0.62265 3764600 3764600 0 0 NaN 0 0 0 0 0 0 0 2316600 1448000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2316600 0 0 1448000 0 0 464 746 157 157 5043 5728 16272;16273 17103;17104 16273 17104 20190902_JH_WT_Ubi_3 11524 16272 17103 20190902_JH_WT_Ubi_2 12001 16272 17103 20190902_JH_WT_Ubi_2 12001 sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN;sp|P31942-6|HNRH3_HUMAN;sp|P31942-5|HNRH3_HUMAN 120;202;236;251;114;120 sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN Isoform 4 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-3|HNRH3_HUMAN Isoform 3 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-2|HNRH3_HUMAN Is 1 46.4609 0.0233379 46.461 22.35 46.461 1 46.4609 0.0233379 46.461 1 M EADVEFVTHEDAVAAMSKDKNNMQHRYIELF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX ATGEADVEFVTHEDAVAAM(1)SK ATGEADVEFVTHEDAVAAM(46.46)SK 19 3 0.2275 2096000 2096000 0 0 NaN 0 0 0 0 0 0 0 2096000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2096000 0 0 0 0 0 465 747 120 120 300 353 1019 1103 1019 1103 20190902_JH_WT_Ubi_2 9686 1019 1103 20190902_JH_WT_Ubi_2 9686 1019 1103 20190902_JH_WT_Ubi_2 9686 sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN;sp|P31942-6|HNRH3_HUMAN;sp|P31942-5|HNRH3_HUMAN 45;127;161;176;39;45 sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN Isoform 4 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-3|HNRH3_HUMAN Isoform 3 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-2|HNRH3_HUMAN Is 1 82.0335 5.85428E-05 82.034 63.332 82.034 1 59.5743 0.0020248 59.574 1 82.0335 5.85428E-05 82.034 2 M YGNDGFDDRMRDGRGMGGHGYGGAGDASSGF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP GM(1)GGHGYGGAGDASSGFHGGHFVHM(1)R GM(82.03)GGHGYGGAGDASSGFHGGHFVHM(82.03)R 2 3 -0.13212 7639900 0 7639900 0 NaN 0 0 0 0 0 0 605270 0 7034700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605270 0 0 0 0 0 7034700 0 466 747 45 45 1624 1850 5204;5205 5479;5480 5205 5480 20190902_JH_WT_Ubi_3 5436 5205 5480 20190902_JH_WT_Ubi_3 5436 5205 5480 20190902_JH_WT_Ubi_3 5436 sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN;sp|P31942-6|HNRH3_HUMAN;sp|P31942-5|HNRH3_HUMAN 68;150;184;199;62;68 sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN sp|P31942-4|HNRH3_HUMAN Isoform 4 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-3|HNRH3_HUMAN Isoform 3 of Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens OX=9606 GN=HNRNPH3;sp|P31942-2|HNRH3_HUMAN Is 1 82.0335 5.85428E-05 82.034 63.332 82.034 1 59.5743 0.0020248 59.574 1 82.0335 5.85428E-05 82.034 2 M AGDASSGFHGGHFVHMRGLPFRATENDIANF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GM(1)GGHGYGGAGDASSGFHGGHFVHM(1)R GM(82.03)GGHGYGGAGDASSGFHGGHFVHM(82.03)R 25 3 -0.13212 7639900 0 7639900 0 NaN 0 0 0 0 0 0 605270 0 7034700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605270 0 0 0 0 0 7034700 0 467 747 68 68 1624 1850 5204;5205 5479;5480 5205 5480 20190902_JH_WT_Ubi_3 5436 5205 5480 20190902_JH_WT_Ubi_3 5436 5205 5480 20190902_JH_WT_Ubi_3 5436 sp|P31943|HNRH1_HUMAN;sp|P55795|HNRH2_HUMAN 271;271 sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4;sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens OX=9606 GN=HNRNPH2 PE=1 SV=1 1 53.2519 0.0305901 56.551 43.924 53.252 1 56.5506 0.0305901 56.551 1 53.2519 0.0353092 53.252 1 M GSDRFGRDLNYCFSGMSDHRYGDGGSTFQST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPXXXXXXXXXXX DLNYCFSGM(1)SDHR DLNYCFSGM(53.25)SDHR 9 3 -0.17404 21455000 21455000 0 0 NaN 0 0 9743000 0 0 0 0 0 11712000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9743000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11712000 0 0 468 748 271 271 585 671 1843;1844 1953;1954 1844 1954 20190902_JH_WT_Ubi_3 8153 1843 1953 20190821_JH_WT_Ubi 6424 1843 1953 20190821_JH_WT_Ubi 6424 sp|P31943|HNRH1_HUMAN 345 sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4 1 102.689 1.11954E-06 102.69 67.031 102.69 1 102.689 1.11954E-06 102.69 1 M EADVEFATHEDAVAAMSKDKANMQHRYVELF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX VTGEADVEFATHEDAVAAM(1)SK VTGEADVEFATHEDAVAAM(102.69)SK 19 3 0.52589 3356400 3356400 0 0 NaN 0 0 3356400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3356400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 469 748 345 345 5025 5702 16143 16959 16143 16959 20190821_JH_WT_Ubi 6955 16143 16959 20190821_JH_WT_Ubi 6955 16143 16959 20190821_JH_WT_Ubi 6955 sp|P31943|HNRH1_HUMAN 293 sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4 1 41.5543 0.000312353 85.469 59.394 41.554 1 49.3429 0.016875 49.343 1 85.4687 0.000312353 85.469 1 51.5913 0.0134801 51.591 1 41.5543 0.0294067 41.554 1 M DGGSTFQSTTGHCVHMRGLPYRATENDIYNF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YGDGGSTFQSTTGHCVHM(1)R YGDGGSTFQSTTGHCVHM(41.55)R 18 4 -0.024477 28889000 28889000 0 0 NaN 1439500 0 3438200 0 0 0 0 16984000 7027300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1439500 0 0 0 0 0 3438200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16984000 0 0 7027300 0 0 470 748 293 293 5136 5841 16570;16571;16572;16573 17415;17416;17417;17418 16573 17418 20190902_JH_WT_Ubi_3 5454 16571 17416 20190821_JH_WT_Ubi 3982 16571 17416 20190821_JH_WT_Ubi 3982 sp|P31949|S10AB_HUMAN 89 sp|P31949|S10AB_HUMAN sp|P31949|S10AB_HUMAN sp|P31949|S10AB_HUMAN Protein S100-A11 OS=Homo sapiens OX=9606 GN=S100A11 PE=1 SV=2 1 84.0298 5.44057E-06 84.03 62.331 84.03 1 54.4193 0.000352137 54.419 1 84.0298 5.44057E-06 84.03 1 M QLDFSEFLNLIGGLAMACHDSFLKAVPSQKR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LDTNSDGQLDFSEFLNLIGGLAM(1)ACHDSFLK LDTNSDGQLDFSEFLNLIGGLAM(84.03)ACHDSFLK 23 3 -0.55769 5384600 5384600 0 0 NaN 0 2988500 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2988500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471 751 89 89 2379;2539 2705;2706;2884 7801;7802;8248 8203;8204;8672 8248 8672 20190902_JH_WT_Ubi_2 16894 8248 8672 20190902_JH_WT_Ubi_2 16894 8248 8672 20190902_JH_WT_Ubi_2 16894 sp|P31949|S10AB_HUMAN 43 sp|P31949|S10AB_HUMAN sp|P31949|S10AB_HUMAN sp|P31949|S10AB_HUMAN Protein S100-A11 OS=Homo sapiens OX=9606 GN=S100A11 PE=1 SV=2 1 124.119 1.29594E-07 124.12 77.275 124.12 1 124.119 1.29594E-07 124.12 1 M DGYNYTLSKTEFLSFMNTELAAFTKNQKDPG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX TEFLSFM(1)NTELAAFTK TEFLSFM(124.12)NTELAAFTK 7 2 -0.76076 4400800 4400800 0 0 NaN 0 0 0 0 0 0 0 0 2979400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2979400 0 0 472 751 43 43 4309 4888;4889 13642;13643 14311;14312 13643 14312 20190902_JH_WT_Ubi_3 14824 13643 14312 20190902_JH_WT_Ubi_3 14824 13643 14312 20190902_JH_WT_Ubi_3 14824 sp|P32297-3|ACHA3_HUMAN;sp|P32297-1|ACHA3_HUMAN;sp|P32297|ACHA3_HUMAN 455;454;455 sp|P32297-3|ACHA3_HUMAN sp|P32297-3|ACHA3_HUMAN sp|P32297-3|ACHA3_HUMAN Isoform 3 of Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens OX=9606 GN=CHRNA3;sp|P32297-1|ACHA3_HUMAN Isoform 1 of Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens OX=9606 GN=CHRNA3;sp|P32297|ACHA3_HU 1 79.2831 0.0143682 79.283 9.1939 79.283 1 79.2831 0.0143682 79.283 M EIKEAIQSVKYIAENMKAQNEAKEEQKAQEI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPXXXXXXXX YIAENM(1)KAQNEAK YIAENM(79.28)KAQNEAK 6 3 0.52815 6594700 6594700 0 0 NaN 0 0 0 0 0 0 6594700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6594700 0 0 0 0 0 0 0 0 473 753 455 455 5156 5864 16623 17471 16623 17471 20190902_JH_MUT_Ubi_3 7448 16623 17471 20190902_JH_MUT_Ubi_3 7448 16623 17471 20190902_JH_MUT_Ubi_3 7448 sp|P32320|CDD_HUMAN 91 sp|P32320|CDD_HUMAN sp|P32320|CDD_HUMAN sp|P32320|CDD_HUMAN Cytidine deaminase OS=Homo sapiens OX=9606 GN=CDA PE=1 SV=2 1 68.187 0.00285325 68.187 28.338 68.187 1 68.187 0.00285325 68.187 1 M SEGYKDFRAIAIASDMQDDFISPCGACRQVM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX AIAIASDM(1)QDDFISPCGACR AIAIASDM(68.19)QDDFISPCGACR 8 3 1.0291 2192400 2192400 0 0 NaN 0 0 0 0 0 0 0 0 2192400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2192400 0 0 474 754 91 91 157 181 538 589 538 589 20190902_JH_WT_Ubi_3 11454 538 589 20190902_JH_WT_Ubi_3 11454 538 589 20190902_JH_WT_Ubi_3 11454 sp|P32969|RL9_HUMAN 1 sp|P32969|RL9_HUMAN sp|P32969|RL9_HUMAN sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens OX=9606 GN=RPL9 PE=1 SV=1 1 49.0886 0.0205929 49.089 26.027 49.089 1 49.0886 0.0205929 49.089 M _______________MKTILSNQTVDIPENV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)KTILSNQTVDIPENVDITLKGR M(49.09)KTILSNQTVDIPENVDITLKGR 1 4 -2.8284 579200 579200 0 0 NaN 0 579200 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 579200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475 757 1 1 2930 3327 9426 9921 9426 9921 20190821_JH_MUT_Ubi 8991 9426 9921 20190821_JH_MUT_Ubi 8991 9426 9921 20190821_JH_MUT_Ubi 8991 sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN 837;896;837;781;896;840;906;781;840 sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN Isoform 2 of Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1;sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1 PE=1 SV=3;sp|P33527-6|MRP1_HUMAN Isoform 6 of Mul 1 82.2594 5.8273E-10 140.96 82.145 82.259 1 74.7718 0.00020772 107.63 1 81.9919 1.0275E-09 136.26 1 127.297 1.71259E-07 127.3 1 140.959 5.8273E-10 140.96 1 136.342 1.01962E-09 136.34 1 82.2594 2.48E-07 123.76 1 67.6848 0.0132803 67.685 2 M NGVTGVSGPGKEAKQMENGMLVTDSAGKQLQ Deamidation (NQ);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);Deamidation (NQ);Oxidation (M);X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP QM(1)ENGM(1)LVTDSAGKQLQR QM(82.26)ENGM(82.26)LVTDSAGKQLQR 2 3 0.77142 32178000 0 32178000 0 NaN 3699800 935460 0 6148200 6543300 2222900 3763800 2183700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3699800 0 0 935460 0 0 0 0 0 6148200 0 0 6543300 0 0 2222900 0 0 3763800 0 0 2183700 0 0 0 0 476 760 837 837 797;3669 902;4178 2499;2500;2501;2502;2503;2504;2505;11724;11725;11726 2631;2632;2633;2634;2635;2636;2637;12303;12304;12305 11726 12305 20190902_JH_MUT_Ubi_3 6211 2501 2633 20190902_JH_EV_Ubi_3 4625 2501 2633 20190902_JH_EV_Ubi_3 4625 sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN 841;900;841;785;900;844;910;785;844 sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN Isoform 2 of Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1;sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1 PE=1 SV=3;sp|P33527-6|MRP1_HUMAN Isoform 6 of Mul 1 82.2594 5.8273E-10 140.96 82.145 82.259 1 74.7718 0.00020772 107.63 1 81.9919 1.0275E-09 136.26 1 127.297 1.71259E-07 127.3 1 140.959 5.8273E-10 140.96 1 136.342 1.01962E-09 136.34 1 82.2594 2.48E-07 123.76 1 67.6848 0.0132803 67.685 2 M GVSGPGKEAKQMENGMLVTDSAGKQLQRQLS X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);Deamidation (NQ);Oxidation (M);X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPXXX QM(1)ENGM(1)LVTDSAGKQLQR QM(82.26)ENGM(82.26)LVTDSAGKQLQR 6 3 0.77142 32178000 0 32178000 0 NaN 3699800 935460 0 6148200 6543300 2222900 3763800 2183700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3699800 0 0 935460 0 0 0 0 0 6148200 0 0 6543300 0 0 2222900 0 0 3763800 0 0 2183700 0 0 0 0 477 760 841 841 797;3669 902;4178 2499;2500;2501;2502;2503;2504;2505;11724;11725;11726 2631;2632;2633;2634;2635;2636;2637;12303;12304;12305 11726 12305 20190902_JH_MUT_Ubi_3 6211 2501 2633 20190902_JH_EV_Ubi_3 4625 2501 2633 20190902_JH_EV_Ubi_3 4625 sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN 757;816;757;816;816 sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN sp|P33527-2|MRP1_HUMAN Isoform 2 of Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1;sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens OX=9606 GN=ABCC1 PE=1 SV=3;sp|P33527-6|MRP1_HUMAN Isoform 6 of Mul 1 79.7441 0.00304389 91.202 59.375 79.744 1 67.9969 0.0190938 67.997 1 91.202 0.00304389 91.202 1 61.5322 0.0282849 61.532 1 73.8812 0.0117817 73.881 1 89.4403 0.0033143 89.44 1 63.7601 0.0243586 63.76 1 79.7441 0.00766226 79.744 1 M HVGKHIFENVIGPKGMLKNKTRILVTHSMSY X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPXXXXXXXXXXXXX HIFENVIGPKGM(1)LK HIFENVIGPKGM(79.74)LK 12 3 -0.88747 39148000 39148000 0 0 NaN 3063500 5519500 0 0 2281800 7951800 11158000 5369500 3804300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3063500 0 0 5519500 0 0 0 0 0 0 0 0 2281800 0 0 7951800 0 0 11158000 0 0 5369500 0 0 3804300 0 0 478 760 757 757 1869 2125 6026;6027;6028;6029;6030;6031;6032 6347;6348;6349;6350;6351;6352;6353 6032 6353 20190902_JH_WT_Ubi_3 8146 6028 6349 20190821_JH_MUT_Ubi 6242 6028 6349 20190821_JH_MUT_Ubi 6242 sp|P34932|HSP74_HUMAN 731 sp|P34932|HSP74_HUMAN sp|P34932|HSP74_HUMAN sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens OX=9606 GN=HSPA4 PE=1 SV=4 1 52.8915 0.0312928 52.891 28.378 52.891 1 52.8915 0.0312928 52.891 1 M FKNKEDQYDHLDAADMTKVEKSTNEAMEWMN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPXXXXXXXXXXXXX EDQYDHLDAADM(1)TK EDQYDHLDAADM(52.89)TK 12 3 -0.5285 1176200 1176200 0 0 NaN 0 0 1176200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1176200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 479 767 731 731 829 935 2597 2734 2597 2734 20190821_JH_WT_Ubi 4976 2597 2734 20190821_JH_WT_Ubi 4976 2597 2734 20190821_JH_WT_Ubi 4976 sp|P34932|HSP74_HUMAN 522 sp|P34932|HSP74_HUMAN sp|P34932|HSP74_HUMAN sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens OX=9606 GN=HSPA4 PE=1 SV=4 1 151.584 4.81263E-22 151.58 111.93 151.58 1 140.798 5.95807E-16 140.8 1 151.584 4.81263E-22 151.58 1 M EEPMETDQNAKEEEKMQVDQEEPHVEEQQQQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QVDQEEPHVEEQQQQTPAENK M(151.58)QVDQEEPHVEEQQQQTPAENK 1 3 1.3805 5642800 5642800 0 0 2.2482 0 0 2016000 0 0 0 0 3626800 0 NaN NaN 0.80324 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2016000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3626800 0 0 0 0 0 480 767 522 522 2962 3375 9556;9557 10058;10059 9557 10059 20190902_JH_WT_Ubi_2 6382 9557 10059 20190902_JH_WT_Ubi_2 6382 9557 10059 20190902_JH_WT_Ubi_2 6382 sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN 452;452;82 sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN Isoform 2 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1;sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 PE=1 SV=1;sp|P35221-3|CTNA1_HUMAN Isoform 3 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 1 80.0822 3.70795E-23 158.02 123.74 80.082 1 80.0822 3.70795E-23 158.02 1 138.284 4.48691E-16 138.28 1 135.214 6.0465E-16 135.21 1 M ACSISNNEEGVKLVRMSASQLEALCPQVINA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)SASQLEALCPQVINAALALAAKPQSK M(80.08)SASQLEALCPQVINAALALAAKPQSK 1 3 0.28746 16104000 16104000 0 0 1.3967 9849900 0 0 1305200 3251200 0 0 0 0 1.1245 0 NaN NaN NaN NaN NaN NaN NaN 9849900 0 0 0 0 0 0 0 0 1305200 0 0 3251200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481 769 452 452 2966;2967 3380;3382 9566;9567;9568;9571 10069;10070;10071;10074 9571 10074 20190821_JH_EV_Ubi 13677 9566 10069 20190821_JH_EV_Ubi 14471 9566 10069 20190821_JH_EV_Ubi 14471 sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN 484;484;114 sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN Isoform 2 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1;sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 PE=1 SV=1;sp|P35221-3|CTNA1_HUMAN Isoform 3 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 1 145.493 3.93335E-21 181.67 117.63 145.49 1 160.48 1.16996E-14 160.48 1 121.182 8.59217E-05 121.18 1 86.9442 0.00381249 86.944 1 141.536 2.72746E-07 141.54 1 143.939 1.55364E-07 143.94 1 157.497 3.20033E-11 157.5 1 147.732 2.28043E-10 147.73 1 181.672 3.93335E-21 181.67 1 145.493 7.95094E-08 145.49 1 M LALAAKPQSKLAQENMDLFKEQWEKQVRVLT X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPXXXXXXXXXXX PQSKLAQENM(1)DLFK PQSKLAQENM(145.49)DLFK 10 3 -0.60165 154630000 154630000 0 0 7.9818 16480000 9381600 16956000 15664000 22956000 14050000 13302000 20811000 25030000 3.3823 2.4513 NaN NaN NaN 2.3887 2.7763 NaN NaN 16480000 0 0 9381600 0 0 16956000 0 0 15664000 0 0 22956000 0 0 14050000 0 0 13302000 0 0 20811000 0 0 25030000 0 0 482 769 484 484 3499 3991 11243;11244;11245;11246;11247;11248;11249;11250;11251 11811;11812;11813;11814;11815;11816;11817;11818;11819 11251 11819 20190902_JH_WT_Ubi_3 7568 11250 11818 20190902_JH_WT_Ubi_2 7965 11250 11818 20190902_JH_WT_Ubi_2 7965 sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN 560;560;190 sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN sp|P35221-2|CTNA1_HUMAN Isoform 2 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1;sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 PE=1 SV=1;sp|P35221-3|CTNA1_HUMAN Isoform 3 of Catenin alpha-1 OS=Homo sapiens OX=9606 GN=CTNNA1 1 113.14 1.59129E-06 113.14 71.938 113.14 1 81.8538 0.000430836 81.854 1 113.14 1.59129E-06 113.14 1 M IRGRAARVIHVVTSEMDNYEPGVYTEKVLEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPXXXX VIHVVTSEM(1)DNYEPGVYTEK VIHVVTSEM(113.14)DNYEPGVYTEK 9 3 -0.41292 3717400 3717400 0 0 NaN 583030 0 0 0 0 0 0 3134400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 583030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3134400 0 0 0 0 0 483 769 560 560 4859 5516 15610;15611 16406;16407 15611 16407 20190902_JH_WT_Ubi_2 9313 15611 16407 20190902_JH_WT_Ubi_2 9313 15611 16407 20190902_JH_WT_Ubi_2 9313 sp|P35222|CTNB1_HUMAN 131 sp|P35222|CTNB1_HUMAN sp|P35222|CTNB1_HUMAN sp|P35222|CTNB1_HUMAN Catenin beta-1 OS=Homo sapiens OX=9606 GN=CTNNB1 PE=1 SV=1 1 42.7909 0.0129536 42.791 13.298 42.791 1 42.7909 0.0129536 42.791 1 M AAHPTNVQRLAEPSQMLKHAVVNLINYQDDA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP LAEPSQM(1)LKHAVVNLINYQDDAELATR LAEPSQM(42.79)LKHAVVNLINYQDDAELATR 7 4 0.2621 802880 802880 0 0 NaN 0 802880 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 802880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484 770 131 131 2497 2835 8118 8535 8118 8535 20190821_JH_MUT_Ubi 11184 8118 8535 20190821_JH_MUT_Ubi 11184 8118 8535 20190821_JH_MUT_Ubi 11184 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 323;187 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 0.982966 17.6123 0.0290187 61.815 25.872 61.815 0.982966 17.6123 0.0290187 61.815 2 M VTIPGQQDKDMFQETMEAMRIMGIPEEEQMG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPXXXXXXXXXXX DM(0.017)FQETM(0.983)EAM(1)R DM(-17.61)FQETM(17.61)EAM(57.36)R 7 2 -3.9472 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 485 776 323 323 617 708 1942 2061 1942 2061 20190821_JH_WT_Ubi 6893 1942 2061 20190821_JH_WT_Ubi 6893 1942 2061 20190821_JH_WT_Ubi 6893 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 326;190 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 0.999998 57.3643 0.0290187 61.815 25.872 61.815 0.999998 57.3643 0.0290187 61.815 2 M PGQQDKDMFQETMEAMRIMGIPEEEQMGLLR X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX DM(0.017)FQETM(0.983)EAM(1)R DM(-17.61)FQETM(17.61)EAM(57.36)R 10 2 -3.9472 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 486 776 326 326 617 708 1942 2061 1942 2061 20190821_JH_WT_Ubi 6893 1942 2061 20190821_JH_WT_Ubi 6893 1942 2061 20190821_JH_WT_Ubi 6893 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 1594;1016 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 66.9619 0.0252178 66.962 32.776 66.962 1 66.9619 0.0252178 66.962 M QSEEKKKQLVRQVREMEAELEDERKQRSMAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPXXXXXXX EM(1)EAELEDER EM(66.96)EAELEDER 2 2 -0.17016 1347800 1347800 0 0 NaN 0 0 1347800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1347800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 487 776 1594 1594 1032 1162 3280 3448 3280 3448 20190821_JH_WT_Ubi 4426 3280 3448 20190821_JH_WT_Ubi 4426 3280 3448 20190821_JH_WT_Ubi 4426 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 146;10 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 83.8231 0.000327874 102.63 50.935 83.823 1 102.63 0.000327874 102.63 1 48.2163 0.0312999 48.216 1 83.8231 0.00308877 83.823 1 M SEEIVEMYKGKKRHEMPPHIYAITDTAYRSM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPXX HEM(1)PPHIYAITDTAYR HEM(83.82)PPHIYAITDTAYR 3 3 -0.81914 22521000 22521000 0 0 8.0187 0 0 7687000 0 0 2275900 0 12558000 0 NaN NaN 2.7369 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7687000 0 0 0 0 0 0 0 0 2275900 0 0 0 0 0 12558000 0 0 0 0 0 488 776 146 146 1817 2063 5789;5790;5791 6093;6094;6095 5791 6095 20190902_JH_WT_Ubi_2 8427 5790 6094 20190821_JH_WT_Ubi 6390 5790 6094 20190821_JH_WT_Ubi 6390 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 627;491 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 58.564 0.0085797 58.564 25.299 58.564 1 44.7352 0.0284341 44.735 1 58.564 0.0085797 58.564 1 M WKDVDRIIGLDQVAGMSETALPGAFKTRKGM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPXXXXX IIGLDQVAGM(1)SETALPGAFK IIGLDQVAGM(58.56)SETALPGAFK 10 3 1.7789 4055500 4055500 0 0 1.8969 0 0 0 0 0 0 0 2141900 1913600 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2141900 0 0 1913600 0 0 489 776 627 627 2150 2452 7124;7125 7497;7498 7125 7498 20190902_JH_WT_Ubi_3 13879 7125 7498 20190902_JH_WT_Ubi_3 13879 7125 7498 20190902_JH_WT_Ubi_3 13879 sp|P35579|MYH9_HUMAN 1373 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4 1 144.472 1.43277E-10 144.47 102.47 144.47 1 101.888 0.00175322 101.89 1 144.472 1.43277E-10 144.47 1 M QIATLHAQVADMKKKMEDSVGCLETAEEVKR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX M(1)EDSVGCLETAEEVK M(144.47)EDSVGCLETAEEVK 1 2 0.11856 23116000 23116000 0 0 NaN 0 0 0 0 0 0 0 10318000 9133800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10318000 0 0 9133800 0 0 490 776 1373 1373 2397;2894 2726;3286 7854;9329;9330 8258;9822;9823 9330 9823 20190902_JH_WT_Ubi_3 8866 9330 9823 20190902_JH_WT_Ubi_3 8866 9330 9823 20190902_JH_WT_Ubi_3 8866 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN;sp|P35749-4|MYH11_HUMAN;sp|P35749-3|MYH11_HUMAN;sp|P35749|MYH11_HUMAN;sp|P35749-2|MYH11_HUMAN;sp|P35580|MYH10_HUMAN;sp|P35580-5|MYH10_HUMAN;sp|P35580-2|MYH10_HUMAN;sp|P35580-3|MYH10_HUMAN;sp|P35580-4|MYH10_HUMAN 484;348;491;498;491;498;491;500;507;491;501 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9;sp|P35749-4|MYH11_HUMAN Isoform 4 of Myosin-11 OS=Homo sapiens OX=9606 GN=MYH11;sp|P35749-3|MYH11_HUMAN Iso 1 47.9424 4.1702E-18 153.36 103.29 47.942 1 153.365 4.1702E-18 153.36 1 110.26 9.60016E-06 110.26 1 47.9424 0.0236882 47.942 1 M INYTNEKLQQLFNHTMFILEQEEYQREGIEW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX LQQLFNHTM(1)FILEQEEYQR LQQLFNHTM(47.94)FILEQEEYQR 9 3 0.18094 11968000 11968000 0 0 NaN 0 0 5307300 0 0 0 0 3532700 3128300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5307300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3532700 0 0 3128300 0 0 491 776 484 484 2793 3169 9016;9017;9018 9487;9488;9489 9018 9489 20190902_JH_WT_Ubi_3 11778 9016 9487 20190821_JH_WT_Ubi 10464 9016 9487 20190821_JH_WT_Ubi 10464 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 589;453 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 58.8484 0.00972098 58.848 19.705 58.848 1 58.8484 0.00972098 58.848 1 M AGKVDYKADEWLMKNMDPLNDNIATLLHQSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)DPLNDNIATLLHQSSDK NM(58.85)DPLNDNIATLLHQSSDK 2 3 0.89637 8965200 8965200 0 0 NaN 0 0 8965200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8965200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 492 776 589 589 3159 3609 10162 10699 10162 10699 20190821_JH_WT_Ubi 10475 10162 10699 20190821_JH_WT_Ubi 10475 10162 10699 20190821_JH_WT_Ubi 10475 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 1678;1100 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 51.6434 0.0115009 51.643 28.526 51.643 1 51.6434 0.0115009 51.643 2 M EILAQAKENEKKLKSMEAEMIQLQEELAAAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP SM(1)EAEM(1)IQLQEELAAAER SM(51.64)EAEM(51.64)IQLQEELAAAER 2 2 2.1616 2787700 0 2787700 0 NaN 0 0 0 0 0 0 0 2787700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2787700 0 0 0 0 493 776 1678 1678 4067 4616 12880 13506 12880 13506 20190902_JH_WT_Ubi_2 12172 12880 13506 20190902_JH_WT_Ubi_2 12172 12880 13506 20190902_JH_WT_Ubi_2 12172 sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN 1682;1104 sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 PE=1 SV=4;sp|P35579-2|MYH9_HUMAN Isoform 2 of Myosin-9 OS=Homo sapiens OX=9606 GN=MYH9 1 51.6434 0.0115009 51.643 28.526 51.643 1 51.6434 0.0115009 51.643 2 M QAKENEKKLKSMEAEMIQLQEELAAAERAKR X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPXXX SM(1)EAEM(1)IQLQEELAAAER SM(51.64)EAEM(51.64)IQLQEELAAAER 6 2 2.1616 2787700 0 2787700 0 NaN 0 0 0 0 0 0 0 2787700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2787700 0 0 0 0 494 776 1682 1682 4067 4616 12880 13506 12880 13506 20190902_JH_WT_Ubi_2 12172 12880 13506 20190902_JH_WT_Ubi_2 12172 12880 13506 20190902_JH_WT_Ubi_2 12172 sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN 112;176;292;83 sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN Isoform 4 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613-2|BASI_HUMAN Isoform 2 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613|BASI_HUMAN Basigin OS=Homo sapiens OX=9606 GN=BSG PE=1 SV=2;sp|P35613-3|BASI_HUMAN Isoform 3 of 1 150.922 5.65122E-15 154.51 97.642 150.92 1 154.513 5.65122E-15 154.51 1 150.922 1.00858E-14 150.92 1 M SSSQGRSELHIENLNMEADPGQYRCNGTSSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPXXXXXXX SELHIENLNM(1)EADPGQYR SELHIENLNM(150.92)EADPGQYR 10 3 0.31707 18600000 18600000 0 0 5.9314 0 0 0 0 0 0 0 9361400 9238800 NaN NaN NaN NaN NaN NaN NaN 2.9853 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9361400 0 0 9238800 0 0 495 778 112 112 3889 4415 12306;12307 12904;12905 12307 12905 20190902_JH_WT_Ubi_3 9195 12306 12904 20190902_JH_WT_Ubi_2 9640 12306 12904 20190902_JH_WT_Ubi_2 9640 sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN 59;123;239;30 sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN Isoform 4 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613-2|BASI_HUMAN Isoform 2 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613|BASI_HUMAN Basigin OS=Homo sapiens OX=9606 GN=BSG PE=1 SV=2;sp|P35613-3|BASI_HUMAN Isoform 3 of 1 72.8979 0.000771456 94.673 40.149 72.898 1 94.6731 0.000771456 94.673 1 72.8979 0.00492263 72.898 1 M KAVKSSEHINEGETAMLVCKSESVPPVTDWA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPXXXXXXXXXXX SSEHINEGETAM(1)LVCK SSEHINEGETAM(72.9)LVCK 12 3 0.097434 5605700 5605700 0 0 0.81762 0 0 0 0 0 0 0 2938700 2666900 NaN NaN NaN NaN NaN NaN NaN 0.42863 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2938700 0 0 2666900 0 0 496 778 59 59 4148 4713 13152;13153 13790;13791;13792;13793 13153 13792 20190902_JH_WT_Ubi_3 6800 13152 13790 20190902_JH_WT_Ubi_2 7091 13152 13790 20190902_JH_WT_Ubi_2 7091 sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN 30;94;210 sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN sp|P35613-4|BASI_HUMAN Isoform 4 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613-2|BASI_HUMAN Isoform 2 of Basigin OS=Homo sapiens OX=9606 GN=BSG;sp|P35613|BASI_HUMAN Basigin OS=Homo sapiens OX=9606 GN=BSG PE=1 SV=2 1 47.478 0.00472888 47.478 20.712 47.478 1 47.478 0.00472888 47.478 1 M DDQWGEYSCVFLPEPMGTANIQLHGPPRVKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX VDSDDQWGEYSCVFLPEPM(1)GTANIQLHGPPR VDSDDQWGEYSCVFLPEPM(47.48)GTANIQLHGPPR 19 3 -0.10721 1795900 1795900 0 0 1.5304 0 0 0 0 0 0 0 0 1795900 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795900 0 0 497 778 30 30 4757 5397 15244 16013 15244 16013 20190902_JH_WT_Ubi_3 13890 15244 16013 20190902_JH_WT_Ubi_3 13890 15244 16013 20190902_JH_WT_Ubi_3 13890 sp|P35913|PDE6B_HUMAN;sp|P35913-2|PDE6B_HUMAN 175;175 sp|P35913|PDE6B_HUMAN sp|P35913|PDE6B_HUMAN sp|P35913|PDE6B_HUMAN Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta OS=Homo sapiens OX=9606 GN=PDE6B PE=1 SV=2;sp|P35913-2|PDE6B_HUMAN Isoform 2 of Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta OS=Homo sapiens OX=9606 GN=PDE 0.521316 0.352253 0.0139522 53.553 14.976 53.553 0.521316 0.352253 0.0139522 53.553 1 M FSSFADELTDYKTKNMLATPIMNGKDVVAVI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(0.521)LATPIM(0.478)NGKDVVAVIMAVNK NM(0.35)LATPIM(-0.35)NGKDVVAVIM(-33.83)AVNK 2 3 1.4496 7118700 7118700 0 0 NaN 7118700 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 7118700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 498 781 175 175 3163 3615 10182 10721 10182 10721 20190821_JH_EV_Ubi 9468 10182 10721 20190821_JH_EV_Ubi 9468 10182 10721 20190821_JH_EV_Ubi 9468 sp|P35913|PDE6B_HUMAN;sp|P35913-2|PDE6B_HUMAN 181;181 sp|P35913|PDE6B_HUMAN sp|P35913|PDE6B_HUMAN sp|P35913|PDE6B_HUMAN Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta OS=Homo sapiens OX=9606 GN=PDE6B PE=1 SV=2;sp|P35913-2|PDE6B_HUMAN Isoform 2 of Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta OS=Homo sapiens OX=9606 GN=PDE 0.70442 3.81548 0.0254063 48.053 7.1978 48.053 0.70442 3.81548 0.0254063 48.053 1 M ELTDYKTKNMLATPIMNGKDVVAVIMAVNKL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX NM(0.293)LATPIM(0.704)NGKDVVAVIM(0.003)AVNK NM(-3.82)LATPIM(3.82)NGKDVVAVIM(-24.54)AVNK 8 3 1.6945 2191600 2191600 0 0 NaN 0 0 0 2191600 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2191600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 499 781 181 181 3163 3615 10183 10722 10183 10722 20190902_JH_EV_Ubi_2 9356 10183 10722 20190902_JH_EV_Ubi_2 9356 10183 10722 20190902_JH_EV_Ubi_2 9356 sp|P36269-2|GGT5_HUMAN;sp|P36269|GGT5_HUMAN;sp|P36269-3|GGT5_HUMAN 472;504;505 sp|P36269-2|GGT5_HUMAN sp|P36269-2|GGT5_HUMAN sp|P36269-2|GGT5_HUMAN Isoform 2 of Glutathione hydrolase 5 proenzyme OS=Homo sapiens OX=9606 GN=GGT5;sp|P36269|GGT5_HUMAN Glutathione hydrolase 5 proenzyme OS=Homo sapiens OX=9606 GN=GGT5 PE=1 SV=2;sp|P36269-3|GGT5_HUMAN Isoform 3 of Glutathione hydrolase 1 122.157 1.74853E-09 122.16 106.21 122.16 1 112.824 1.7605E-08 112.82 1 122.157 1.74853E-09 122.16 1 M GAGGELIISAVAQAIMSKLWLGFDLRAAIAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX LVIGGAGGELIISAVAQAIM(1)SK LVIGGAGGELIISAVAQAIM(122.16)SK 20 3 -0.16803 3036000 3036000 0 0 NaN 1199800 1836200 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1199800 0 0 1836200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 783 472 472 2844 3226 9174;9175 9655;9656;9657 9175 9657 20190821_JH_MUT_Ubi 14942 9175 9657 20190821_JH_MUT_Ubi 14942 9175 9657 20190821_JH_MUT_Ubi 14942 sp|P36897-3|TGFR1_HUMAN;sp|P36897|TGFR1_HUMAN;sp|P36897-2|TGFR1_HUMAN 426;503;507 sp|P36897-3|TGFR1_HUMAN sp|P36897-3|TGFR1_HUMAN sp|P36897-3|TGFR1_HUMAN Isoform 3 of TGF-beta receptor type-1 OS=Homo sapiens OX=9606 GN=TGFBR1;sp|P36897|TGFR1_HUMAN TGF-beta receptor type-1 OS=Homo sapiens OX=9606 GN=TGFBR1 PE=1 SV=1;sp|P36897-2|TGFR1_HUMAN Isoform 2 of TGF-beta receptor type-1 OS=Homo 1 73.9005 1.64704E-11 169.52 121.65 73.9 1 169.518 1.64704E-11 169.52 1 79.0356 0.00952696 79.036 1 107.026 0.00121684 107.03 1 56.3592 0.0256142 56.359 1 73.9005 0.00912995 73.9 1 M IKKTLSQLSQQEGIKM_______________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPXXXXXXXXXXXXXXX TLSQLSQQEGIKM(1) TLSQLSQQEGIKM(73.9) 13 2 -0.34497 4893700 4893700 0 0 NaN 1235000 0 0 1315700 1054500 0 0 0 1288600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1235000 0 0 0 0 0 0 0 0 1315700 0 0 1054500 0 0 0 0 0 0 0 0 0 0 0 1288600 0 0 501 789 426 426 4503 5111 14322;14323;14324;14325;14326 15033;15034;15035;15036;15037 14326 15037 20190902_JH_WT_Ubi_3 8034 14322 15033 20190821_JH_EV_Ubi 6483 14322 15033 20190821_JH_EV_Ubi 6483 sp|P36957-2|ODO2_HUMAN;sp|P36957|ODO2_HUMAN 98;184 sp|P36957-2|ODO2_HUMAN sp|P36957-2|ODO2_HUMAN sp|P36957-2|ODO2_HUMAN Isoform 2 of Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens OX=9606 GN=DLST;sp|P36957|ODO2_HUMAN Dihydrolipoyllysine-residue succinyltransferase compon 1 55.0463 0.00057638 55.046 22.326 55.046 1 47.9189 0.00827077 47.919 1 55.0463 0.00057638 55.046 1 M TAAAVPPPAAPIPTQMPPVPSPSQPPSGKPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPXX AEPTAAAVPPPAAPIPTQM(1)PPVPSPSQPPSGK AEPTAAAVPPPAAPIPTQM(55.05)PPVPSPSQPPSGK 19 3 0.75307 3115900 3115900 0 0 NaN 0 0 0 0 0 0 0 1735000 1380900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1735000 0 0 1380900 0 0 502 791 98 98 98 112 352;353;354 388;389;390 354 390 20190902_JH_WT_Ubi_3 11819 354 390 20190902_JH_WT_Ubi_3 11819 354 390 20190902_JH_WT_Ubi_3 11819 sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN 21;21;21;21;44;80 sp|P37088-3|SCNNA_HUMAN sp|P37088-3|SCNNA_HUMAN sp|P37088-3|SCNNA_HUMAN Isoform 3 of Amiloride-sensitive sodium channel subunit alpha OS=Homo sapiens OX=9606 GN=SCNN1A;sp|P37088-4|SCNNA_HUMAN Isoform 4 of Amiloride-sensitive sodium channel subunit alpha OS=Homo sapiens OX=9606 GN=SCNN1A;sp|P37088|SCNNA_ 1 125.775 1.23872E-23 164.01 98.775 125.78 1 123.057 1.1931E-12 123.06 1 48.5972 0.00963962 48.597 1 66.0414 1.23872E-23 164.01 1 125.775 6.20006E-14 131.84 1 48.2445 1.86619E-23 160.43 1 110.735 4.67655E-06 110.74 1;2 M LEEQDSSPPQSTPGLMKGNKREEQGLGPEPA X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX M(1)EGNKLEEQDSSPPQSTPGLM(1)KGNK M(125.78)EGNKLEEQDSSPPQSTPGLM(125.78)KGNK 21 3 0.39566 54560000 36761000 17799000 0 28.213 10462000 794740 0 14122000 8506600 4724100 3495700 0 0 7.4273 1.5133 NaN NaN NaN NaN NaN NaN NaN 8341100 2121400 0 0 794740 0 0 0 0 12141000 1981700 0 6827000 1679600 0 3854000 870160 0 3495700 0 0 0 0 0 0 0 0 503 794 21 21 2558;2559;2898;2899 2906;2908;2909;3290;3291 8307;8308;8309;8310;8311;8314;8315;8316;9339;9340;9341;9342;9343;9344;9345;9346 8732;8733;8734;8735;8736;8739;8740;8741;9832;9833;9834;9835;9836;9837;9838;9839 9346 9839 20190902_JH_EV_Ubi_3 6121 8308 8733 20190902_JH_EV_Ubi_2 5102 8308 8733 20190902_JH_EV_Ubi_2 5102 sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN 1;1;1;1;24;60 sp|P37088-3|SCNNA_HUMAN sp|P37088-3|SCNNA_HUMAN sp|P37088-3|SCNNA_HUMAN Isoform 3 of Amiloride-sensitive sodium channel subunit alpha OS=Homo sapiens OX=9606 GN=SCNN1A;sp|P37088-4|SCNNA_HUMAN Isoform 4 of Amiloride-sensitive sodium channel subunit alpha OS=Homo sapiens OX=9606 GN=SCNN1A;sp|P37088|SCNNA_ 1 125.775 6.20006E-14 125.78 96.283 125.78 1 123.057 1.1931E-12 123.06 1 48.5972 0.00963962 48.597 1 66.0414 5.58594E-06 89.47 1 125.775 6.20006E-14 125.78 1 48.2445 0.010037 48.244 2 M _______________MEGNKLEEQDSSPPQS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EGNKLEEQDSSPPQSTPGLM(1)KGNK M(125.78)EGNKLEEQDSSPPQSTPGLM(125.78)KGNK 1 3 0.39566 17799000 0 17799000 0 NaN 2121400 794740 0 1981700 1679600 870160 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2121400 0 0 794740 0 0 0 0 0 1981700 0 0 1679600 0 0 870160 0 0 0 0 0 0 0 0 0 0 504 794 1 1 2898;2899 3290;3291 9339;9340;9341;9342;9343;9344;9345;9346 9832;9833;9834;9835;9836;9837;9838;9839 9346 9839 20190902_JH_EV_Ubi_3 6121 9346 9839 20190902_JH_EV_Ubi_3 6121 9346 9839 20190902_JH_EV_Ubi_3 6121 sp|P37235|HPCL1_HUMAN;sp|P84074|HPCA_HUMAN;sp|P61601|NCALD_HUMAN 131;131;131 sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN Hippocalcin-like protein 1 OS=Homo sapiens OX=9606 GN=HPCAL1 PE=1 SV=3;sp|P84074|HPCA_HUMAN Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens OX=9606 GN=HPCA PE=1 SV=2;sp|P61601|NCALD_HUMAN Neurocalcin-delta OS=Homo 1 66.5682 7.37563E-05 106.6 69.675 66.568 1 62.8609 0.00553976 62.861 1 79.6515 0.00112013 79.652 1 62.8609 0.00553976 62.861 1 55.8855 0.0101422 55.885 1 106.603 7.37563E-05 106.6 1 82.5896 0.000884452 82.59 1 65.5275 0.00454753 65.528 1 66.5682 0.00421902 66.568 3 M ISRSEMLEIVQAIYKMVSSVMKMPEDESTPE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VSSVM(1)KM(1)PEDESTPEK M(66.57)VSSVM(66.57)KM(66.57)PEDESTPEK 1 3 0.12172 13936000 0 0 13936000 NaN 0 623640 801490 673420 1698100 1874100 2694900 4009100 1561600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 623640 0 0 801490 0 0 673420 0 0 1698100 0 0 1874100 0 0 2694900 0 0 4009100 0 0 1561600 505 795 131 131 2985 3409;3410 9659;9660;9661;9662;9663;9664;9665;9666 10169;10170;10171;10172;10173;10174;10175;10176;10177;10178 9666 10177 20190902_JH_WT_Ubi_3 5250 9662 10173 20190902_JH_MUT_Ubi_2 4551 9662 10173 20190902_JH_MUT_Ubi_2 4551 sp|P37235|HPCL1_HUMAN;sp|P84074|HPCA_HUMAN;sp|P61601|NCALD_HUMAN 136;136;136 sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN Hippocalcin-like protein 1 OS=Homo sapiens OX=9606 GN=HPCAL1 PE=1 SV=3;sp|P84074|HPCA_HUMAN Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens OX=9606 GN=HPCA PE=1 SV=2;sp|P61601|NCALD_HUMAN Neurocalcin-delta OS=Homo 1 66.5682 7.37563E-05 106.6 69.675 66.568 1 62.8609 0.00553976 62.861 1 79.6515 0.00112013 79.652 1 62.8609 0.00553976 62.861 1 55.8855 0.0101422 55.885 1 106.603 7.37563E-05 106.6 1 82.5896 0.000884452 82.59 1 65.5275 0.00454753 65.528 1 66.5682 0.00421902 66.568 2;3 M MLEIVQAIYKMVSSVMKMPEDESTPEKRTDK X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPXXXX M(1)VSSVM(1)KM(1)PEDESTPEK M(66.57)VSSVM(66.57)KM(66.57)PEDESTPEK 6 3 0.12172 14837000 0 900240 13936000 NaN 0 623640 801490 673420 1698100 1874100 3595100 4009100 1561600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 623640 0 0 801490 0 0 673420 0 0 1698100 0 0 1874100 0 900240 2694900 0 0 4009100 0 0 1561600 506 795 136 136 2985 3409;3410 9659;9660;9661;9662;9663;9664;9665;9666;9667 10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179 9666 10177 20190902_JH_WT_Ubi_3 5250 9662 10173 20190902_JH_MUT_Ubi_2 4551 9662 10173 20190902_JH_MUT_Ubi_2 4551 sp|P37235|HPCL1_HUMAN;sp|P84074|HPCA_HUMAN;sp|P61601|NCALD_HUMAN 138;138;138 sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN sp|P37235|HPCL1_HUMAN Hippocalcin-like protein 1 OS=Homo sapiens OX=9606 GN=HPCAL1 PE=1 SV=3;sp|P84074|HPCA_HUMAN Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens OX=9606 GN=HPCA PE=1 SV=2;sp|P61601|NCALD_HUMAN Neurocalcin-delta OS=Homo 1 66.5682 7.37563E-05 106.6 69.675 66.568 1 62.8609 0.00553976 62.861 1 79.6515 0.00112013 79.652 1 62.8609 0.00553976 62.861 1 55.8855 0.0101422 55.885 1 106.603 7.37563E-05 106.6 1 82.5896 0.000884452 82.59 1 65.5275 0.00454753 65.528 1 66.5682 0.00421902 66.568 2;3 M EIVQAIYKMVSSVMKMPEDESTPEKRTDKIF X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPXXXXXX M(1)VSSVM(1)KM(1)PEDESTPEK M(66.57)VSSVM(66.57)KM(66.57)PEDESTPEK 8 3 0.12172 14837000 0 900240 13936000 NaN 0 623640 801490 673420 1698100 1874100 3595100 4009100 1561600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 623640 0 0 801490 0 0 673420 0 0 1698100 0 0 1874100 0 900240 2694900 0 0 4009100 0 0 1561600 507 795 138 138 2985 3409;3410 9659;9660;9661;9662;9663;9664;9665;9666;9667 10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179 9666 10177 20190902_JH_WT_Ubi_3 5250 9662 10173 20190902_JH_MUT_Ubi_2 4551 9662 10173 20190902_JH_MUT_Ubi_2 4551 sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN 178;199 sp|P37802|TAGL2_HUMAN sp|P37802|TAGL2_HUMAN sp|P37802|TAGL2_HUMAN Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 PE=1 SV=3;sp|P37802-2|TAGL2_HUMAN Isoform 2 of Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 1 61.3533 0.0219184 61.353 23.332 61.353 1 46.368 0.0301102 46.368 1 61.3533 0.0219184 61.353 1 M SDNQLQEGKNVIGLQMGTNRGASQAGMTGYG X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX NVIGLQM(1)GTNR NVIGLQM(61.35)GTNR 7 2 1.5445 16262000 16262000 0 0 NaN 0 0 0 0 0 1366200 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1366200 0 0 0 0 0 0 0 0 0 0 0 508 796 178 178 3058;3245 3495;3706 9869;10418 10398;10962 10418 10962 20190902_JH_WT_Ubi_3 7666 10418 10962 20190902_JH_WT_Ubi_3 7666 10418 10962 20190902_JH_WT_Ubi_3 7666 sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN 130;151 sp|P37802|TAGL2_HUMAN sp|P37802|TAGL2_HUMAN sp|P37802|TAGL2_HUMAN Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 PE=1 SV=3;sp|P37802-2|TAGL2_HUMAN Isoform 2 of Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 1 212.21 2.38186E-27 212.21 145.41 212.21 1 212.21 2.38186E-27 212.21 M DLWEGKNMACVQRTLMNLGGLAVARDDGLFS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX TLM(1)NLGGLAVAR TLM(212.21)NLGGLAVAR 3 2 -0.44094 25934000 25934000 0 0 NaN 0 0 25934000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 25934000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 509 796 130 130 4486 5088 14231 14936 14231 14936 20190821_JH_WT_Ubi 8423 14231 14936 20190821_JH_WT_Ubi 8423 14231 14936 20190821_JH_WT_Ubi 8423 sp|P38117|ETFB_HUMAN;sp|P38117-2|ETFB_HUMAN 38;129 sp|P38117|ETFB_HUMAN sp|P38117|ETFB_HUMAN sp|P38117|ETFB_HUMAN Electron transfer flavoprotein subunit beta OS=Homo sapiens OX=9606 GN=ETFB PE=1 SV=3;sp|P38117-2|ETFB_HUMAN Isoform 2 of Electron transfer flavoprotein subunit beta OS=Homo sapiens OX=9606 GN=ETFB 1 57.5952 0.00198649 83.418 50.794 57.595 1 83.4175 0.00198649 83.418 1 57.5952 0.0178381 57.595 1 M KPDRTGVVTDGVKHSMNPFCEIAVEEAVRLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPXX HSM(1)NPFCEIAVEEAVR HSM(57.6)NPFCEIAVEEAVR 3 3 0.4088 3784900 3784900 0 0 NaN 0 0 0 0 0 0 0 2128100 1656800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2128100 0 0 1656800 0 0 510 798 38 38 1994 2272 6531;6532 6871;6872 6532 6872 20190902_JH_WT_Ubi_3 10648 6531 6871 20190902_JH_WT_Ubi_2 11124 6531 6871 20190902_JH_WT_Ubi_2 11124 sp|P38606-2|VATA_HUMAN;sp|P38606|VATA_HUMAN 285;318 sp|P38606-2|VATA_HUMAN sp|P38606-2|VATA_HUMAN sp|P38606-2|VATA_HUMAN Isoform 2 of V-type proton ATPase catalytic subunit A OS=Homo sapiens OX=9606 GN=ATP6V1A;sp|P38606|VATA_HUMAN V-type proton ATPase catalytic subunit A OS=Homo sapiens OX=9606 GN=ATP6V1A PE=1 SV=2 1 112.845 0.00045818 112.84 67.247 112.84 1 112.845 0.00045818 112.84 M ESIMKRTALVANTSNMPVAAREASIYTGITL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX TALVANTSNM(1)PVAAR TALVANTSNM(112.84)PVAAR 10 2 -0.68531 703940 703940 0 0 NaN 0 0 703940 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 703940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 511 801 285 285 4258 4833 13476 14136 13476 14136 20190821_JH_WT_Ubi 5570 13476 14136 20190821_JH_WT_Ubi 5570 13476 14136 20190821_JH_WT_Ubi 5570 sp|P39023|RL3_HUMAN 216 sp|P39023|RL3_HUMAN sp|P39023|RL3_HUMAN sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens OX=9606 GN=RPL3 PE=1 SV=2 1 102.194 3.27725E-08 107.56 78.69 102.19 1 107.557 3.27725E-08 107.56 1 100.924 8.89412E-08 100.92 1 102.194 7.81912E-08 102.19 1 M LEQQVPVNQVFGQDEMIDVIGVTKGKGYKGV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LEQQVPVNQVFGQDEM(1)IDVIGVTK LEQQVPVNQVFGQDEM(102.19)IDVIGVTK 16 3 -1.1955 16466000 16466000 0 0 3.9499 0 0 8609000 0 0 0 0 2464500 5392800 NaN NaN 2.0651 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8609000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2464500 0 0 5392800 0 0 512 804 216 216 1091;2577 1229;2928 3463;8365;8366;8367 3640;8795;8796;8797 8367 8797 20190902_JH_WT_Ubi_3 13955 8365 8795 20190821_JH_WT_Ubi 13134 8365 8795 20190821_JH_WT_Ubi 13134 sp|P39023|RL3_HUMAN 332 sp|P39023|RL3_HUMAN sp|P39023|RL3_HUMAN sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens OX=9606 GN=RPL3 PE=1 SV=2 1 85.5178 1.80973E-08 112.53 83.667 85.518 1 112.534 1.80973E-08 112.53 1 91.2759 8.09313E-06 91.276 1 85.5178 6.68317E-05 85.518 1 M LGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SINPLGGFVHYGEVTNDFVM(1)LK SINPLGGFVHYGEVTNDFVM(85.52)LK 20 3 -1.7605 26412000 26412000 0 0 NaN 0 0 11845000 0 0 0 0 8925800 5640700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 11845000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8925800 0 0 5640700 0 0 513 804 332 332 3974 4519 12606;12607;12608 13223;13224;13225 12608 13225 20190902_JH_WT_Ubi_3 13999 12606 13223 20190821_JH_WT_Ubi 13211 12606 13223 20190821_JH_WT_Ubi 13211 sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN 305;320 sp|P40121-2|CAPG_HUMAN sp|P40121-2|CAPG_HUMAN sp|P40121-2|CAPG_HUMAN Isoform 2 of Macrophage-capping protein OS=Homo sapiens OX=9606 GN=CAPG;sp|P40121|CAPG_HUMAN Macrophage-capping protein OS=Homo sapiens OX=9606 GN=CAPG PE=1 SV=2 1 122.643 1.59372E-11 129.06 86.075 122.64 1 47.4849 0.0310625 47.485 1 129.056 1.59372E-11 129.06 1 40.3836 0.032781 40.384 1 81.2259 0.000203838 81.226 1 122.643 9.23931E-10 122.64 1 M ERQAALQVAEGFISRMQYAPNTQVEILPQGH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QYAPNTQVEILPQGHESPIFK M(122.64)QYAPNTQVEILPQGHESPIFK 1 3 0.093007 41921000 41921000 0 0 NaN 0 1075300 15526000 0 0 1697800 0 11118000 12503000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1075300 0 0 15526000 0 0 0 0 0 0 0 0 1697800 0 0 0 0 0 11118000 0 0 12503000 0 0 514 807 305 305 2964 3378 9560;9561;9562;9563;9564 10063;10064;10065;10066;10067 9564 10067 20190902_JH_WT_Ubi_3 11059 9562 10065 20190821_JH_WT_Ubi 9581 9562 10065 20190821_JH_WT_Ubi 9581 sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN 1;1 sp|P40121-2|CAPG_HUMAN sp|P40121-2|CAPG_HUMAN sp|P40121-2|CAPG_HUMAN Isoform 2 of Macrophage-capping protein OS=Homo sapiens OX=9606 GN=CAPG;sp|P40121|CAPG_HUMAN Macrophage-capping protein OS=Homo sapiens OX=9606 GN=CAPG PE=1 SV=2 1 67.8659 5.73109E-10 101.62 57.926 67.866 1 101.622 5.73109E-10 101.62 1 94.9113 4.79873E-07 94.911 1 67.8659 0.00062733 67.866 1 M _______________MYTAIPQSGSPFPGSV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)YTAIPQSGSPFPGSVQDPGLHVWR M(67.87)YTAIPQSGSPFPGSVQDPGLHVWR 1 3 -0.11598 23362000 23362000 0 0 NaN 0 0 11522000 0 0 0 0 4325500 7514300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 11522000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4325500 0 0 7514300 0 0 515 807 1 1 2989 3416 9677;9678;9679 10190;10191;10192 9679 10192 20190902_JH_WT_Ubi_3 14456 9677 10190 20190821_JH_WT_Ubi 13822 9677 10190 20190821_JH_WT_Ubi 13822 sp|P40261|NNMT_HUMAN 1 sp|P40261|NNMT_HUMAN sp|P40261|NNMT_HUMAN sp|P40261|NNMT_HUMAN Nicotinamide N-methyltransferase OS=Homo sapiens OX=9606 GN=NNMT PE=1 SV=1 1 45.7234 0.0321747 45.723 28.293 45.723 1 45.7234 0.0321747 45.723 1 M _______________MESGFTSKDTYLSHFN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ESGFTSKDTYLSHFNPR M(45.72)ESGFTSKDTYLSHFNPR 1 3 0.93641 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 516 810 1 1 2907 3301 9372 9865 9372 9865 20190902_JH_MUT_Ubi_3 9239 9372 9865 20190902_JH_MUT_Ubi_3 9239 9372 9865 20190902_JH_MUT_Ubi_3 9239 sp|P40261|NNMT_HUMAN 196 sp|P40261|NNMT_HUMAN sp|P40261|NNMT_HUMAN sp|P40261|NNMT_HUMAN Nicotinamide N-methyltransferase OS=Homo sapiens OX=9606 GN=NNMT PE=1 SV=1 1 82.4167 0.00713442 82.417 39.699 82.417 1 82.4167 0.00713442 82.417 M RNLGSLLKPGGFLVIMDALKSSYYMIGEQKF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPXXXXXXXXXXX PGGFLVIM(1)DALK PGGFLVIM(82.42)DALK 8 2 0.13112 2539000 2539000 0 0 0.033179 0 0 2539000 0 0 0 0 0 0 NaN NaN 0.033179 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2539000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 810 196 196 3349 3824 10717 11277 10717 11277 20190821_JH_WT_Ubi 14704 10717 11277 20190821_JH_WT_Ubi 14704 10717 11277 20190821_JH_WT_Ubi 14704 sp|P40763-3|STAT3_HUMAN;sp|P40763-2|STAT3_HUMAN;sp|P40763|STAT3_HUMAN 185;185;185 sp|P40763-3|STAT3_HUMAN sp|P40763-3|STAT3_HUMAN sp|P40763-3|STAT3_HUMAN Isoform 3 of Signal transducer and activator of transcription 3 OS=Homo sapiens OX=9606 GN=STAT3;sp|P40763-2|STAT3_HUMAN Isoform Del-701 of Signal transducer and activator of transcription 3 OS=Homo sapiens OX=9606 GN=STAT3;sp|P4076 1 100.948 1.46562E-17 151.28 107.43 100.95 1 89.0114 0.000631488 89.011 1 56.3274 0.017958 56.327 1 151.278 1.46562E-17 151.28 1 100.948 5.58003E-05 100.95 1 M DDFDFNYKTLKSQGDMQDLNGNNQSVTRQKM X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Deamidation (NQ);X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX TLKSQGDM(1)QDLNGNNQSVTR TLKSQGDM(100.95)QDLNGNNQSVTR 8 3 -2.0414 4618700 4618700 0 0 NaN 2362900 0 0 0 1766300 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2362900 0 0 0 0 0 0 0 0 0 0 0 1766300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 518 812 185 185 4479 5079;5080;5081 14217;14218;14219;14220;14221 14922;14923;14924;14925;14926 14221 14926 20190902_JH_MUT_Ubi_2 5248 14218 14923 20190902_JH_EV_Ubi_3 4825 14218 14923 20190902_JH_EV_Ubi_3 4825 sp|P40937-2|RFC5_HUMAN;sp|P40937|RFC5_HUMAN 204;225 sp|P40937-2|RFC5_HUMAN sp|P40937-2|RFC5_HUMAN sp|P40937-2|RFC5_HUMAN Isoform 2 of Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5;sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5 PE=1 SV=1 1 49.1205 0.03067 49.12 9.0074 49.12 1 49.1205 0.03067 49.12 1 M SGDMRRALNILQSTNMAFGKVTEETVYTCTG X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPXXXXXXXXXXX ALNILQSTNM(1)AFGK ALNILQSTNM(49.12)AFGK 10 3 -0.35542 2022600 2022600 0 0 NaN 2022600 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2022600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 519 817 204 204 212 241 704 773 704 773 20190821_JH_EV_Ubi 4511 704 773 20190821_JH_EV_Ubi 4511 704 773 20190821_JH_EV_Ubi 4511 sp|P40939|ECHA_HUMAN 372 sp|P40939|ECHA_HUMAN sp|P40939|ECHA_HUMAN sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=HADHA PE=1 SV=2 1 150.922 1.30162E-67 209.23 167.32 150.92 1 119.507 9.2695E-09 119.51 1 209.232 1.30162E-67 209.23 1 59.1821 0.00670701 59.182 1 150.922 7.76589E-22 150.92 1 M PQKDVKHLAILGAGLMGAGIAQVSVDKGLKT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPXXXX HLAILGAGLM(1)GAGIAQVSVDK HLAILGAGLM(150.92)GAGIAQVSVDK 10 3 -0.32542 45339000 45339000 0 0 2.0917 1029800 0 28326000 0 0 0 6385900 9597300 0 NaN NaN 1.8308 NaN NaN NaN 2.9874 5.1698 0 1029800 0 0 0 0 0 28326000 0 0 0 0 0 0 0 0 0 0 0 6385900 0 0 9597300 0 0 0 0 0 520 818 372 372 1890 2148 6102;6103;6104;6105 6423;6424;6425;6426;6427;6428 6105 6427 20190902_JH_WT_Ubi_2 12486 6104 6425 20190821_JH_WT_Ubi 10755 6104 6425 20190821_JH_WT_Ubi 10755 sp|P40939|ECHA_HUMAN 106 sp|P40939|ECHA_HUMAN sp|P40939|ECHA_HUMAN sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=HADHA PE=1 SV=2 1 58.0786 0.0214019 58.079 18.86 58.079 1 55.0972 0.0256497 55.097 1 58.0786 0.0214019 58.079 M ISSKPGCFIAGADINMLAACKTLQEVTQLSQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPXXXXXXXXXX PGCFIAGADINM(1)LAACK PGCFIAGADINM(58.08)LAACK 12 3 1.1767 1606700 1606700 0 0 2.2924 0 0 0 0 0 0 0 1087400 519380 NaN NaN NaN NaN NaN NaN 0 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1087400 0 0 519380 0 0 521 818 106 106 3343 3817 10700;10701 11259;11260 10701 11260 20190902_JH_WT_Ubi_3 11858 10701 11260 20190902_JH_WT_Ubi_3 11858 10701 11260 20190902_JH_WT_Ubi_3 11858 sp|Q2VIR3-2|IF2GL_HUMAN;sp|Q2VIR3|IF2GL_HUMAN;sp|P41091|IF2G_HUMAN 405;405;405 sp|Q2VIR3-2|IF2GL_HUMAN sp|Q2VIR3-2|IF2GL_HUMAN sp|Q2VIR3-2|IF2GL_HUMAN Isoform 2 of Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens OX=9606 GN=EIF2S3L;sp|Q2VIR3|IF2GL_HUMAN Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapi 1 74.6485 0.00524085 74.853 40.968 74.649 1 71.5134 0.00643742 71.513 1 74.6485 0.00529441 74.649 1 50.8967 0.0295059 50.897 1 74.8534 0.00524085 74.853 M KKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPXXXX NEVLM(1)VNIGSLSTGGR NEVLM(74.65)VNIGSLSTGGR 5 2 -0.83322 7866200 7866200 0 0 NaN 0 1425400 4561300 0 1123700 0 755840 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1425400 0 0 4561300 0 0 0 0 0 1123700 0 0 0 0 0 755840 0 0 0 0 0 0 0 0 522 819 405 405 3045 3480 9817;9818;9819;9820 10341;10342;10343;10344 9820 10344 20190821_JH_WT_Ubi 10568 9819 10343 20190902_JH_MUT_Ubi_3 10729 9819 10343 20190902_JH_MUT_Ubi_3 10729 sp|P41250|GARS_HUMAN 292 sp|P41250|GARS_HUMAN sp|P41250|GARS_HUMAN sp|P41250|GARS_HUMAN Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS PE=1 SV=3 1 52.9098 6.92163E-07 97.589 73.27 52.91 1 97.5886 6.92163E-07 97.589 1 75.2999 0.000488105 75.3 1 78.5128 0.00035819 78.513 1 52.9098 0.0146704 52.91 1 M SFNLMFKTFIGPGGNMPGYLRPETAQGIFLN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP TFIGPGGNM(1)PGYLRPETAQGIFLNFK TFIGPGGNM(52.91)PGYLRPETAQGIFLNFK 9 3 0.018012 24960000 24960000 0 0 5.9517 0 0 9993200 0 0 2863100 0 4284800 7819300 NaN NaN 2.3828 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9993200 0 0 0 0 0 0 0 0 2863100 0 0 0 0 0 4284800 0 0 7819300 0 0 523 821 292 292 4341 4923 13726;13727;13728;13729 14399;14400;14401;14402 13729 14402 20190902_JH_WT_Ubi_3 13686 13727 14400 20190821_JH_WT_Ubi 12834 13727 14400 20190821_JH_WT_Ubi 12834 sp|P41440|S19A1_HUMAN;sp|P41440-3|S19A1_HUMAN 1;1 sp|P41440|S19A1_HUMAN sp|P41440|S19A1_HUMAN sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens OX=9606 GN=SLC19A1 PE=1 SV=3;sp|P41440-3|S19A1_HUMAN Isoform 3 of Folate transporter 1 OS=Homo sapiens OX=9606 GN=SLC19A1 1 98.7267 2.60051E-09 118.23 91.635 98.727 1 105.518 1.57828E-07 105.52 1 86.5392 1.45238E-05 86.539 1 61.0872 0.00200344 61.087 1 118.228 2.60051E-09 118.23 1 87.4965 4.10232E-06 87.496 1 118.228 2.60051E-09 118.23 1 73.3832 0.000345661 73.383 1 98.7267 4.84881E-07 98.727 1 M _______________MVPSSPAVEKQVPVEP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VPSSPAVEKQVPVEPGPDPELR M(98.73)VPSSPAVEKQVPVEPGPDPELR 1 3 -0.17695 110320000 110320000 0 0 37.74 16185000 6754800 14270000 21651000 14334000 0 8913900 14030000 14178000 NaN NaN NaN 18.945 NaN 0 NaN NaN NaN 16185000 0 0 6754800 0 0 14270000 0 0 21651000 0 0 14334000 0 0 0 0 0 8913900 0 0 14030000 0 0 14178000 0 0 524 823 1 1 2983 3404 9630;9631;9632;9633;9634;9635;9636;9637 10138;10139;10140;10141;10142;10143;10144;10145;10146;10147 9637 10147 20190902_JH_WT_Ubi_3 11679 9634 10144 20190902_JH_MUT_Ubi_3 10462 9634 10144 20190902_JH_MUT_Ubi_3 10462 sp|P42167-2|LAP2B_HUMAN;sp|P42167|LAP2B_HUMAN 239;348 sp|P42167-2|LAP2B_HUMAN sp|P42167-2|LAP2B_HUMAN sp|P42167-2|LAP2B_HUMAN Isoform Gamma of Lamina-associated polypeptide 2, isoforms beta/gamma OS=Homo sapiens OX=9606 GN=TMPO;sp|P42167|LAP2B_HUMAN Lamina-associated polypeptide 2, isoforms beta/gamma OS=Homo sapiens OX=9606 GN=TMPO PE=1 SV=2 1 99.3661 1.51496E-08 116.94 78.525 99.366 1 116.942 1.51496E-08 116.94 1 60.3475 0.00686315 60.347 1 77.5762 0.000457462 77.576 1 93.5507 8.67933E-06 93.551 1 96.8478 4.508E-06 96.848 1 99.3661 1.48868E-06 99.366 1 M EKTEERRVERDILKEMFPYEASTPTGISASC X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP DILKEM(1)FPYEASTPTGISASCR DILKEM(99.37)FPYEASTPTGISASCR 6 3 0.34586 15321000 15321000 0 0 14.507 0 2321800 0 1169400 0 3880400 3315700 2664100 1970100 NaN NaN NaN NaN NaN 3.6741 NaN NaN NaN 0 0 0 2321800 0 0 0 0 0 1169400 0 0 0 0 0 3880400 0 0 3315700 0 0 2664100 0 0 1970100 0 0 525 826 239 239 536 618 1719;1720;1721;1722;1723;1724 1823;1824;1825;1826;1827;1828;1829 1724 1829 20190902_JH_WT_Ubi_3 11573 1720 1824 20190821_JH_MUT_Ubi 9786 1720 1824 20190821_JH_MUT_Ubi 9786 sp|P42285|MTREX_HUMAN 726 sp|P42285|MTREX_HUMAN sp|P42285|MTREX_HUMAN sp|P42285|MTREX_HUMAN Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3 1 49.0886 0.0196676 49.089 17.669 49.089 1 49.0886 0.0196676 49.089 1 M ATEAAKPAKPDEKGEMQVVPVLVHLLSAISS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GEM(1)QVVPVLVHLLSAISSVR GEM(49.09)QVVPVLVHLLSAISSVR 3 3 -1.0993 1572700 1572700 0 0 NaN 0 1572700 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1572700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526 828 726 726 1439 1639 4572 4804 4572 4804 20190821_JH_MUT_Ubi 14806 4572 4804 20190821_JH_MUT_Ubi 14806 4572 4804 20190821_JH_MUT_Ubi 14806 sp|P42356-2|PI4KA_HUMAN;sp|P42356|PI4KA_HUMAN 166;1414 sp|P42356-2|PI4KA_HUMAN sp|P42356-2|PI4KA_HUMAN sp|P42356-2|PI4KA_HUMAN Isoform 2 of Phosphatidylinositol 4-kinase alpha OS=Homo sapiens OX=9606 GN=PI4KA;sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens OX=9606 GN=PI4KA PE=1 SV=4 1 56.4882 0.011798 56.488 8.7744 56.488 1 56.4882 0.011798 56.488 1 M RLREDISIMIKFWTAMFSDKKYLTASQLVPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP FWTAM(1)FSDKKYLTASQLVPPDNQDTR FWTAM(56.49)FSDKKYLTASQLVPPDNQDTR 5 3 2.761 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 527 830 166 166 1342 1523 4234 4452 4234 4452 20190902_JH_EV_Ubi_2 12284 4234 4452 20190902_JH_EV_Ubi_2 12284 4234 4452 20190902_JH_EV_Ubi_2 12284 sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN 464;509 sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN Isoform 2 of Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3;sp|P43003|EAA1_HUMAN Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3 PE=1 SV=1 1 101.753 0.000138266 105.19 84.454 101.75 1 95.8224 0.000392493 95.822 1 48.8228 0.0171948 48.823 1 73.4149 0.000776621 94.339 1 105.191 0.000138266 105.19 1 101.753 0.000203707 101.75 1 45.7218 0.0056375 71.545 1 43.6903 0.0227677 43.69 1 79.0217 0.00113821 89.232 1 101.753 0.000203707 101.75 1;2 M VEHLSRHELKNRDVEMGNSVIEENEMKKPYQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);GlyGly (K);X;X;Deamidation (NQ) XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX DVEM(1)GNSVIEENEM(1)KK DVEM(101.75)GNSVIEENEM(101.75)KK 4 3 0.84438 241980000 42506000 199480000 0 11.92 30271000 2336900 19729000 68354000 43405000 5806900 4085200 34068000 33926000 6.2889 NaN 2.8476 NaN NaN NaN NaN 3.9804 NaN 6747400 23524000 0 0 2336900 0 7679900 12049000 0 5772300 62581000 0 2674800 40730000 0 1523800 4283100 0 0 4085200 0 8125100 25943000 0 9982500 23944000 0 528 836 464 464 726 823;824 2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2287;2288;2289 2400;2401;2402;2403;2404;2405;2406;2407;2408;2409;2410;2411;2412;2414;2415;2416 2281 2408 20190902_JH_WT_Ubi_3 6429 2274 2401 20190902_JH_EV_Ubi_2 5298 2274 2401 20190902_JH_EV_Ubi_2 5298 sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN 474;519 sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN Isoform 2 of Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3;sp|P43003|EAA1_HUMAN Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3 PE=1 SV=1 1 101.753 0.000138266 105.19 84.454 101.75 1 95.8224 0.000392493 95.822 1 48.8228 0.0171948 48.823 1 73.4149 0.00262187 73.415 1 105.191 0.000138266 105.19 1 101.753 0.000203707 101.75 1 45.7218 0.0205619 45.722 1 43.6903 0.0227677 50.843 1 79.0217 0.00157605 79.022 1 101.753 0.000203707 101.75 1;2 M NRDVEMGNSVIEENEMKKPYQLIAQDNETEK X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);GlyGly (K);X;X;Deamidation (NQ);X;X;X;Deamidation (NQ);X;X;X;X;X;GlyGly (K) XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX DVEM(1)GNSVIEENEM(1)KK DVEM(101.75)GNSVIEENEM(101.75)KK 14 3 0.84438 201460000 1982800 199480000 0 9.9237 23524000 2336900 12049000 62581000 40730000 4283100 6067900 25943000 23944000 4.8871 NaN 1.7391 NaN NaN NaN NaN 3.0311 NaN 0 23524000 0 0 2336900 0 0 12049000 0 0 62581000 0 0 40730000 0 0 4283100 0 1982800 4085200 0 0 25943000 0 0 23944000 0 529 836 474 474 726 823;824 2273;2274;2275;2276;2277;2278;2279;2280;2281;2286 2400;2401;2402;2403;2404;2405;2406;2407;2408;2413 2281 2408 20190902_JH_WT_Ubi_3 6429 2274 2401 20190902_JH_EV_Ubi_2 5298 2274 2401 20190902_JH_EV_Ubi_2 5298 sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN 497;542 sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN sp|P43003-2|EAA1_HUMAN Isoform 2 of Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3;sp|P43003|EAA1_HUMAN Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3 PE=1 SV=1 1 94.9729 1.07995E-28 164.97 124.54 94.973 1 114.559 7.44886E-08 114.56 1 104.837 2.89443E-06 104.84 1 89.5567 1.07995E-28 164.97 1 94.9729 2.0495E-28 159.5 1 64.4996 0.00994245 64.5 1 110.368 2.73944E-07 110.37 1 M AQDNETEKPIDSETKM_______________ X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPXXXXXXXXXXXXXXX PYQLIAQDNETEKPIDSETKM(1) PYQLIAQDNETEKPIDSETKM(94.97) 21 3 1.4099 50553000 50553000 0 0 15.704 10858000 1420000 0 13567000 8933500 2511200 0 0 0 3.3731 NaN NaN NaN NaN NaN NaN NaN NaN 10858000 0 0 1420000 0 0 0 0 0 13567000 0 0 8933500 0 0 2511200 0 0 0 0 0 0 0 0 0 0 0 530 836 497 497 3593 4097;4099;4100;4101 11564;11565;11566;11567;11568;11570;11571;11572;11573;11574;11575 12141;12142;12143;12144;12145;12147;12148;12149;12150;12151;12152 11575 12152 20190902_JH_EV_Ubi_3 7871 11565 12142 20190902_JH_EV_Ubi_2 7518 11565 12142 20190902_JH_EV_Ubi_2 7518 sp|P43007|SATT_HUMAN 1 sp|P43007|SATT_HUMAN sp|P43007|SATT_HUMAN sp|P43007|SATT_HUMAN Neutral amino acid transporter A OS=Homo sapiens OX=9606 GN=SLC1A4 PE=1 SV=1 1 138.125 2.4347E-61 184.93 159.25 138.12 1 121.621 2.14563E-17 121.62 1 159.864 2.63744E-40 159.86 1 83.6471 2.33307E-06 84.905 1 58.7759 2.4347E-61 184.93 1 174.549 5.14571E-50 174.55 1 138.125 1.36492E-24 138.12 1 M _______________MEKSNETNGYLDSAQA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EKSNETNGYLDSAQAGPAAGPGAPGTAAGR M(138.12)EKSNETNGYLDSAQAGPAAGPGAPGTAAGR 1 3 4.1241 34223000 34223000 0 0 NaN 6785700 4747100 0 7327000 6349900 6198500 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 6785700 0 0 4747100 0 0 0 0 0 7327000 0 0 6349900 0 0 6198500 0 0 0 0 0 0 0 0 0 0 0 531 837 1 1 2901 3293;3294 9348;9349;9350;9351;9352;9353;9354;9355 9841;9842;9843;9844;9845;9846;9847;9848 9355 9848 20190902_JH_WT_Ubi_3 9649 9351 9844 20190902_JH_EV_Ubi_3 8398 9351 9844 20190902_JH_EV_Ubi_3 8398 sp|P43121|MUC18_HUMAN 621 sp|P43121|MUC18_HUMAN sp|P43121|MUC18_HUMAN sp|P43121|MUC18_HUMAN Cell surface glycoprotein MUC18 OS=Homo sapiens OX=9606 GN=MCAM PE=1 SV=2 1 122.188 3.95677E-08 127.66 81.347 122.19 1 118.046 5.06849E-06 118.05 1 86.7997 0.000678902 86.8 1 127.664 1.42705E-07 127.66 1 115.197 7.86569E-06 115.2 1 123.189 3.95677E-08 123.19 1 119.961 3.18826E-06 119.96 1 112.44 1.05725E-05 112.44 1 122.188 1.00165E-06 122.19 1 M SELVVEVKSDKLPEEMGLLQGSSGDKRAPGD X;X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPXXXX SDKLPEEM(1)GLLQGSSGDK SDKLPEEM(122.19)GLLQGSSGDK 8 3 0.030522 68222000 68222000 0 0 20.042 2909200 1522500 1956700 3483100 3443700 2544900 2994500 3310100 0 NaN NaN NaN NaN 1.0117 NaN NaN NaN NaN 2909200 0 0 1522500 0 0 1956700 0 0 3483100 0 0 3443700 0 0 2544900 0 0 2994500 0 0 3310100 0 0 0 0 0 532 839 621 621 2747;3853 3121;4375 8901;8902;8903;8904;8905;8906;8907;8908;12206;12207;12208;12209;12210;12211;12212 9364;9365;9366;9367;9368;9369;9370;9371;12801;12802;12803;12804;12805;12806;12807 12212 12807 20190902_JH_WT_Ubi_2 8530 8907 9370 20190821_JH_WT_Ubi 5771 12208 12803 20190902_JH_EV_Ubi_3 6968 sp|P43243|MATR3_HUMAN 38 sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens OX=9606 GN=MATR3 PE=1 SV=2 1 165.883 5.43407E-121 243.7 204.31 165.88 1 221.596 8.19562E-90 221.6 1 243.696 5.43407E-121 243.7 1 180.522 5.34466E-44 180.52 1 151.205 4.1444E-26 151.2 1 165.883 3.43226E-34 165.88 1 M AAGIGLLAAATQSLSMPASLGRMNQGTARLA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX DLSAAGIGLLAAATQSLSM(1)PASLGR DLSAAGIGLLAAATQSLSM(165.88)PASLGR 19 3 -0.20967 11370000 11370000 0 0 NaN 0 3387300 1997400 0 0 2196000 2606700 0 1182700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 3387300 0 0 1997400 0 0 0 0 0 0 0 0 2196000 0 0 2606700 0 0 0 0 0 1182700 0 0 533 841 38 38 592 678 1855;1856;1857;1858;1859 1965;1966;1967;1968;1969 1859 1969 20190902_JH_WT_Ubi_3 16059 1858 1968 20190821_JH_WT_Ubi 16237 1858 1968 20190821_JH_WT_Ubi 16237 sp|P43243|MATR3_HUMAN 56 sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens OX=9606 GN=MATR3 PE=1 SV=2 1 41.8261 0.00245862 41.826 23.804 41.826 1 41.8261 0.00245862 41.826 2 M SLGRMNQGTARLASLMNLGMSSSLNQQGAHS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP LASLM(1)NLGM(1)SSSLNQQGAHSALSSASTSSHNLQSIFNIGSR LASLM(41.83)NLGM(41.83)SSSLNQQGAHSALSSASTSSHNLQSIFNIGSR 5 4 -0.58053 11936000 0 11936000 0 1.5611 0 0 11936000 0 0 0 0 0 0 NaN NaN 1.5611 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 11936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 534 841 56 56 2514 2853 8147 8564 8147 8564 20190821_JH_WT_Ubi 11026 8147 8564 20190821_JH_WT_Ubi 11026 8147 8564 20190821_JH_WT_Ubi 11026 sp|P43243|MATR3_HUMAN 60 sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens OX=9606 GN=MATR3 PE=1 SV=2 1 41.8261 0.00245862 41.826 23.804 41.826 1 41.8261 0.00245862 41.826 2 M MNQGTARLASLMNLGMSSSLNQQGAHSALSS X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP LASLM(1)NLGM(1)SSSLNQQGAHSALSSASTSSHNLQSIFNIGSR LASLM(41.83)NLGM(41.83)SSSLNQQGAHSALSSASTSSHNLQSIFNIGSR 9 4 -0.58053 11936000 0 11936000 0 1.5611 0 0 11936000 0 0 0 0 0 0 NaN NaN 1.5611 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 11936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 535 841 60 60 2514 2853 8147 8564 8147 8564 20190821_JH_WT_Ubi 11026 8147 8564 20190821_JH_WT_Ubi 11026 8147 8564 20190821_JH_WT_Ubi 11026 sp|P43304-2|GPDM_HUMAN;sp|P43304|GPDM_HUMAN 35;161 sp|P43304-2|GPDM_HUMAN sp|P43304-2|GPDM_HUMAN sp|P43304-2|GPDM_HUMAN Isoform 2 of Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=GPD2;sp|P43304|GPDM_HUMAN Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=GPD2 PE=1 SV=3 1 135.789 1.06821E-15 135.79 121.92 135.79 1 74.5051 0.000538408 74.505 1 107.654 3.26252E-07 107.65 1 135.789 1.06821E-15 135.79 1 M NLLEIAPHLSAPLPIMLPVYKWWQLPYYWVG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX ANLLEIAPHLSAPLPIM(1)LPVYK ANLLEIAPHLSAPLPIM(135.79)LPVYK 17 3 1.3876 11008000 11008000 0 0 2.7582 3942100 2851500 0 0 0 0 0 0 4214100 NaN NaN 0 NaN NaN NaN NaN NaN NaN 3942100 0 0 2851500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4214100 0 0 536 842 35 35 237 275 802;803;804 874;875;876 804 876 20190902_JH_WT_Ubi_3 15319 804 876 20190902_JH_WT_Ubi_3 15319 804 876 20190902_JH_WT_Ubi_3 15319 sp|P43490|NAMPT_HUMAN 368 sp|P43490|NAMPT_HUMAN sp|P43490|NAMPT_HUMAN sp|P43490|NAMPT_HUMAN Nicotinamide phosphoribosyltransferase OS=Homo sapiens OX=9606 GN=NAMPT PE=1 SV=1 1 112.56 1.6831E-06 112.56 71.472 112.56 1 112.56 1.6831E-06 112.56 1 M GDGVDINTLQEIVEGMKQKMWSIENIAFGSG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX VIQGDGVDINTLQEIVEGM(1)K VIQGDGVDINTLQEIVEGM(112.56)K 19 3 -0.34229 1591300 1591300 0 0 NaN 0 0 0 0 0 0 0 0 1591300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1591300 0 0 537 845 368 368 4863 5522 15639 16435 15639 16435 20190902_JH_WT_Ubi_3 14763 15639 16435 20190902_JH_WT_Ubi_3 14763 15639 16435 20190902_JH_WT_Ubi_3 14763 sp|P43897-3|EFTS_HUMAN;sp|P43897-4|EFTS_HUMAN;sp|P43897|EFTS_HUMAN;sp|P43897-2|EFTS_HUMAN 146;146;146;146 sp|P43897-3|EFTS_HUMAN sp|P43897-3|EFTS_HUMAN sp|P43897-3|EFTS_HUMAN Isoform 3 of Elongation factor Ts, mitochondrial OS=Homo sapiens OX=9606 GN=TSFM;sp|P43897-4|EFTS_HUMAN Isoform 4 of Elongation factor Ts, mitochondrial OS=Homo sapiens OX=9606 GN=TSFM;sp|P43897|EFTS_HUMAN Elongation factor Ts, mitoc 1 70.3354 0.00205945 79.514 34.293 70.335 1 79.5139 0.00491916 79.514 1 55.8644 0.0101949 55.864 1 68.8199 0.00246605 68.82 1 70.3354 0.00205945 70.335 2 M NLKFQLLVQQVALGTMMHCQTLKDQPSAYSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX FQLLVQQVALGTM(1)M(1)HCQTLK FQLLVQQVALGTM(70.34)M(70.34)HCQTLK 13 3 0.092079 8868200 0 8868200 0 1.2326 0 0 0 0 0 0 1997400 2844300 4026400 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1997400 0 0 2844300 0 0 4026400 0 538 846 146 146 1285 1456 4062;4063;4064;4065 4272;4273;4274;4275 4065 4275 20190902_JH_WT_Ubi_3 11615 4063 4273 20190821_JH_WT_Ubi 10253 4065 4275 20190902_JH_WT_Ubi_3 11615 sp|P43897-3|EFTS_HUMAN;sp|P43897-4|EFTS_HUMAN;sp|P43897|EFTS_HUMAN;sp|P43897-2|EFTS_HUMAN 147;147;147;147 sp|P43897-3|EFTS_HUMAN sp|P43897-3|EFTS_HUMAN sp|P43897-3|EFTS_HUMAN Isoform 3 of Elongation factor Ts, mitochondrial OS=Homo sapiens OX=9606 GN=TSFM;sp|P43897-4|EFTS_HUMAN Isoform 4 of Elongation factor Ts, mitochondrial OS=Homo sapiens OX=9606 GN=TSFM;sp|P43897|EFTS_HUMAN Elongation factor Ts, mitoc 1 70.3354 0.00205945 79.514 34.293 70.335 1 79.5139 0.00491916 79.514 1 55.8644 0.0101949 55.864 1 68.8199 0.00246605 68.82 1 70.3354 0.00205945 70.335 2 M LKFQLLVQQVALGTMMHCQTLKDQPSAYSKE X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX FQLLVQQVALGTM(1)M(1)HCQTLK FQLLVQQVALGTM(70.34)M(70.34)HCQTLK 14 3 0.092079 8868200 0 8868200 0 1.2326 0 0 0 0 0 0 1997400 2844300 4026400 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1997400 0 0 2844300 0 0 4026400 0 539 846 147 147 1285 1456 4062;4063;4064;4065 4272;4273;4274;4275 4065 4275 20190902_JH_WT_Ubi_3 11615 4063 4273 20190821_JH_WT_Ubi 10253 4065 4275 20190902_JH_WT_Ubi_3 11615 sp|P46459-2|NSF_HUMAN;sp|P46459|NSF_HUMAN 246;340 sp|P46459-2|NSF_HUMAN sp|P46459-2|NSF_HUMAN sp|P46459-2|NSF_HUMAN Isoform 2 of Vesicle-fusing ATPase OS=Homo sapiens OX=9606 GN=NSF;sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens OX=9606 GN=NSF PE=1 SV=3 1 61.0151 0.00634989 61.015 26.071 61.015 1 61.0151 0.00634989 61.015 1 M IIFDEIDAICKQRGSMAGSTGVHDTVVNQLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GSM(1)AGSTGVHDTVVNQLLSK GSM(61.02)AGSTGVHDTVVNQLLSK 3 3 -0.82207 4376200 4376200 0 0 NaN 0 0 4376200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4376200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 540 855 246 246 1696 1933 5405 5690 5405 5690 20190821_JH_WT_Ubi 7531 5405 5690 20190821_JH_WT_Ubi 7531 5405 5690 20190821_JH_WT_Ubi 7531 sp|P46736-2|BRCC3_HUMAN;sp|P46736-3|BRCC3_HUMAN;sp|P46736|BRCC3_HUMAN;sp|P46736-5|BRCC3_HUMAN 59;60;59;59 sp|P46736-2|BRCC3_HUMAN sp|P46736-2|BRCC3_HUMAN sp|P46736-2|BRCC3_HUMAN Isoform 1 of Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens OX=9606 GN=BRCC3;sp|P46736-3|BRCC3_HUMAN Isoform 3 of Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens OX=9606 GN=BRCC3;sp|P46736|BRCC3_HUMAN Lys-63-specific de 1 133.976 2.66711E-05 133.98 96.648 133.98 1 109.159 0.00109491 109.16 1 94.781 0.00409237 94.781 1 133.976 2.66711E-05 133.98 1 M DDTRSDSKFAYTGTEMRTVAEKVDAVRIVHI X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPXXXXXXXXXXXXXX SDSKFAYTGTEM(1)R SDSKFAYTGTEM(133.98)R 12 3 0.54965 5304000 5304000 0 0 NaN 0 1344600 0 0 0 2195700 1763700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1344600 0 0 0 0 0 0 0 0 0 0 0 2195700 0 0 1763700 0 0 0 0 0 0 0 0 541 856 59 59 3865 4390 12245;12246;12247 12841;12842;12843 12247 12843 20190902_JH_MUT_Ubi_3 5046 12247 12843 20190902_JH_MUT_Ubi_3 5046 12247 12843 20190902_JH_MUT_Ubi_3 5046 sp|P46940|IQGA1_HUMAN 718 sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1 1 114.035 3.16835E-07 114.03 92.416 114.03 1 56.5695 0.0060025 56.57 1 114.035 3.16835E-07 114.03 1 M QEGGWDEPPNFVQNSMQLSREEIQSSISGVT X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX GGYYYYHNLETQEGGWDEPPNFVQNSM(1)QLSR GGYYYYHNLETQEGGWDEPPNFVQNSM(114.03)QLSR 27 3 2.1706 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 542 863 718 718 1507 1719 4838;4839 5089;5090 4839 5090 20190902_JH_WT_Ubi_2 12775 4839 5090 20190902_JH_WT_Ubi_2 12775 4839 5090 20190902_JH_WT_Ubi_2 12775 sp|P46940|IQGA1_HUMAN 1240 sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1 1 147.488 6.13175E-22 149.53 108.84 147.49 1 93.9201 5.75052E-06 93.92 1 149.527 6.13175E-22 149.53 1 81.7875 0.000185909 81.788 1 127.1 2.10594E-11 127.1 1 140.203 6.51931E-16 140.2 1 147.488 7.43908E-22 147.49 1 M LGSIAKMLQHAASNKMFLGDNAHLSIINEYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)FLGDNAHLSIINEYLSQSYQK M(147.49)FLGDNAHLSIINEYLSQSYQK 1 3 0.37167 18207000 18207000 0 0 11.409 0 2268800 7197200 0 0 1395500 1008300 2836100 3501300 NaN 1.4217 NaN NaN NaN NaN NaN NaN NaN 0 0 0 2268800 0 0 7197200 0 0 0 0 0 0 0 0 1395500 0 0 1008300 0 0 2836100 0 0 3501300 0 0 543 863 1240 1240 2911 3306 9380;9381;9382;9383;9384;9385 9873;9874;9875;9876;9877;9878;9879 9385 9879 20190902_JH_WT_Ubi_3 13639 9383 9877 20190821_JH_WT_Ubi 12705 9383 9877 20190821_JH_WT_Ubi 12705 sp|P46940|IQGA1_HUMAN 246 sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1 1 65.7535 1.51504E-08 99.13 71.095 65.753 1 99.1303 1.51504E-08 99.13 1 65.7535 0.00108871 65.753 1 M RIPADTFAALKNPNAMLVNLEEPLASTYQDI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP NPNAM(1)LVNLEEPLASTYQDILYQAK NPNAM(65.75)LVNLEEPLASTYQDILYQAK 5 3 -1.031 2545600 2545600 0 0 NaN 0 0 1865000 0 0 0 0 0 680580 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1865000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 680580 0 0 544 863 246 246 3185 3640 10264;10265 10804;10805 10265 10805 20190902_JH_WT_Ubi_3 15401 10264 10804 20190821_JH_WT_Ubi 15124 10264 10804 20190821_JH_WT_Ubi 15124 sp|P46940|IQGA1_HUMAN 1102 sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN sp|P46940|IQGA1_HUMAN Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1 1 59.8549 3.5626E-07 86.376 40.419 59.855 1 79.3045 2.87767E-06 79.304 1 85.1573 7.90819E-07 85.157 1 55.4063 0.000448799 55.406 1 86.3761 3.5626E-07 86.376 1 51.2344 0.000692479 51.234 1 59.8549 0.000245768 59.855 1 M IKTDPVDIYKSWVNQMESQTGEASKLPYDVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP SWVNQM(1)ESQTGEASKLPYDVTPEQALAHEEVK SWVNQM(59.85)ESQTGEASKLPYDVTPEQALAHEEVK 6 4 3.3452 37939000 37939000 0 0 10.577 10823000 3361700 8297000 4515100 0 5251100 0 0 5690400 NaN 0.93722 NaN NaN NaN NaN NaN NaN NaN 10823000 0 0 3361700 0 0 8297000 0 0 4515100 0 0 0 0 0 5251100 0 0 0 0 0 0 0 0 5690400 0 0 545 863 1102 1102 4231 4804 13370;13371;13372;13373;13374;13375 14025;14026;14027;14028;14029;14030;14031 13375 14031 20190902_JH_WT_Ubi_3 10916 13371 14026 20190902_JH_EV_Ubi_2 9511 13371 14026 20190902_JH_EV_Ubi_2 9511 sp|P47895|AL1A3_HUMAN 386 sp|P47895|AL1A3_HUMAN sp|P47895|AL1A3_HUMAN sp|P47895|AL1A3_HUMAN Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens OX=9606 GN=ALDH1A3 PE=1 SV=2 1 68.2833 0.000540486 106.55 83.695 68.283 1 72.6151 0.00728441 72.615 1 80.5075 0.000540486 106.55 1 68.2833 0.00529755 80.371 1 M SGKKEGAKLECGGSAMEDKGLFIKPTVFSEV X;X;GlyGly (K);GlyGly (K);X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPXXXXXXX LECGGSAM(1)EDKGLFIK LECGGSAM(68.28)EDKGLFIK 8 3 -0.67287 28774000 28774000 0 0 NaN 0 1766600 0 0 0 0 0 9102600 8241700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1766600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9102600 0 0 8241700 0 0 546 865 386 386 892;2549 1010;2895 2839;2840;8282;8283;8284 2987;2988;8706;8707;8708 8284 8708 20190902_JH_WT_Ubi_3 8247 2839 2987 20190902_JH_WT_Ubi_2 4650 2839 2987 20190902_JH_WT_Ubi_2 4650 sp|P47895|AL1A3_HUMAN 405 sp|P47895|AL1A3_HUMAN sp|P47895|AL1A3_HUMAN sp|P47895|AL1A3_HUMAN Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens OX=9606 GN=ALDH1A3 PE=1 SV=2 1 92.952 7.0983E-08 133.23 81.222 92.952 1 128.707 2.34398E-07 128.71 1 114.013 6.4282E-05 114.01 1 106.597 0.00161468 106.6 1 133.23 7.0983E-08 133.23 1 100.681 0.000858287 100.68 1 92.952 0.00199101 92.952 1 M GLFIKPTVFSEVTDNMRIAKEEIFGPVQPIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GLFIKPTVFSEVTDNM(1)R GLFIKPTVFSEVTDNM(92.95)R 16 3 1.3682 32358000 32358000 0 0 NaN 0 4280300 10130000 0 0 8578400 3763600 5605000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 4280300 0 0 10130000 0 0 0 0 0 0 0 0 8578400 0 0 3763600 0 0 5605000 0 0 0 0 0 547 865 405 405 1582 1805 5071;5072;5073;5074;5075;5076 5339;5340;5341;5342;5343;5344;5345 5076 5345 20190902_JH_WT_Ubi_2 12290 5073 5341 20190902_JH_MUT_Ubi_2 11498 5073 5341 20190902_JH_MUT_Ubi_2 11498 sp|P48147|PPCE_HUMAN 495 sp|P48147|PPCE_HUMAN sp|P48147|PPCE_HUMAN sp|P48147|PPCE_HUMAN Prolyl endopeptidase OS=Homo sapiens OX=9606 GN=PREP PE=1 SV=2 1 68.6258 0.000571162 118.03 78.16 68.626 1 104.221 0.00222508 104.22 1 76.2278 0.0120334 76.228 1 107.788 0.00157741 107.79 1 118.033 0.000571162 118.03 1 68.6258 0.0191761 68.626 1 M ITPNYSVSRLIFVRHMGGILAVANIRGGGEY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX HM(1)GGILAVANIR HM(68.63)GGILAVANIR 2 3 0.6538 13746000 13746000 0 0 13.167 0 0 2311800 0 0 1287000 1414000 4829100 3904300 NaN NaN 2.2144 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2311800 0 0 0 0 0 0 0 0 1287000 0 0 1414000 0 0 4829100 0 0 3904300 0 0 548 871 495 495 1950 2216 6332;6333;6334;6335;6336 6663;6664;6665;6666;6667 6336 6667 20190902_JH_WT_Ubi_3 8620 6335 6666 20190902_JH_WT_Ubi_2 9032 6335 6666 20190902_JH_WT_Ubi_2 9032 sp|P48544|KCNJ5_HUMAN 13 sp|P48544|KCNJ5_HUMAN sp|P48544|KCNJ5_HUMAN sp|P48544|KCNJ5_HUMAN G protein-activated inward rectifier potassium channel 4 OS=Homo sapiens OX=9606 GN=KCNJ5 PE=1 SV=2 0.97237 15.4645 0.00891152 46.953 8.5512 46.953 0.97237 15.4645 0.00891152 46.953 1 M ___MAGDSRNAMNQDMEIGVTPWDPKKIPKQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPXXXX AGDSRNAM(0.028)NQDM(0.972)EIGVTPWDPKK AGDSRNAM(-15.46)NQDM(15.46)EIGVTPWDPKK 12 3 -3.6493 1223500 1223500 0 0 NaN 0 1223500 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1223500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 549 873 13 13 119 135 427 473 427 473 20190821_JH_MUT_Ubi 11604 427 473 20190821_JH_MUT_Ubi 11604 427 473 20190821_JH_MUT_Ubi 11604 sp|P49321-2|NASP_HUMAN;sp|P49321|NASP_HUMAN;sp|P49321-3|NASP_HUMAN 56;56;58 sp|P49321-2|NASP_HUMAN sp|P49321-2|NASP_HUMAN sp|P49321-2|NASP_HUMAN Isoform 2 of Nuclear autoantigenic sperm protein OS=Homo sapiens OX=9606 GN=NASP;sp|P49321|NASP_HUMAN Nuclear autoantigenic sperm protein OS=Homo sapiens OX=9606 GN=NASP PE=1 SV=2;sp|P49321-3|NASP_HUMAN Isoform 3 of Nuclear autoantig 1 94.9113 2.73834E-06 95.361 69.444 94.911 1 79.3411 0.000209136 79.341 1 95.361 2.73834E-06 95.361 1 82.6349 0.000125035 82.635 1 94.9113 2.99118E-06 94.911 1 M SEAKKLLGLGQKHLVMGDIPAAVNAFQEAAS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP HLVM(1)GDIPAAVNAFQEAASLLGK HLVM(94.91)GDIPAAVNAFQEAASLLGK 4 3 0.058319 8153300 8153300 0 0 NaN 4927400 1637300 0 0 805130 783440 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 4927400 0 0 1637300 0 0 0 0 0 0 0 0 805130 0 0 783440 0 0 0 0 0 0 0 0 0 0 0 550 880 56 56 1944 2210 6312;6313;6314;6315 6641;6642;6643;6644 6315 6644 20190902_JH_MUT_Ubi_2 14858 6314 6643 20190821_JH_MUT_Ubi 14123 6314 6643 20190821_JH_MUT_Ubi 14123 sp|P49327|FAS_HUMAN 1782 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 52.5002 0.0239688 52.5 12.582 52.5 1 52.5002 0.0239688 52.5 1 M LEIGKFDLSQNHPLGMAIFLKNVTFHGVLLD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX FDLSQNHPLGM(1)AIFLK FDLSQNHPLGM(52.5)AIFLK 11 3 -0.13978 2535400 2535400 0 0 NaN 0 0 0 2535400 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2535400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 551 881 1782 1782 1179 1331 3751 3947 3751 3947 20190902_JH_EV_Ubi_2 10665 3751 3947 20190902_JH_EV_Ubi_2 10665 3751 3947 20190902_JH_EV_Ubi_2 10665 sp|P49327|FAS_HUMAN 453 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 87.4572 1.08989E-06 91.733 56.031 87.457 1 81.329 8.54448E-05 81.329 1 91.7334 1.08989E-06 91.733 1 87.4572 1.71189E-06 87.457 1;2 M LEQGLRHSQDLAFLSMLNDIAAVPATAMPFR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP HSQDLAFLSM(1)LNDIAAVPATAM(1)PFR HSQDLAFLSM(87.46)LNDIAAVPATAM(87.46)PFR 10 3 0.30485 9370500 0 9370500 0 NaN 0 3772500 0 0 0 2587000 3011100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 3772500 0 0 0 0 0 0 0 0 0 0 0 2587000 0 0 3011100 0 0 0 0 0 0 0 552 881 453 453 1997 2275;2276 6538;6539;6540;6541 6878;6879;6880;6881 6540 6880 20190902_JH_MUT_Ubi_3 13295 6539 6879 20190902_JH_MUT_Ubi_2 14560 6539 6879 20190902_JH_MUT_Ubi_2 14560 sp|P49327|FAS_HUMAN 465 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 87.4572 1.08989E-06 91.733 56.031 87.457 1 81.329 8.54448E-05 81.329 1 91.7334 1.08989E-06 91.733 1 87.4572 1.71189E-06 87.457 2 M FLSMLNDIAAVPATAMPFRGYAVLGGERGGP X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX HSQDLAFLSM(1)LNDIAAVPATAM(1)PFR HSQDLAFLSM(87.46)LNDIAAVPATAM(87.46)PFR 22 3 0.30485 9370500 0 9370500 0 NaN 0 3772500 0 0 0 2587000 3011100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 3772500 0 0 0 0 0 0 0 0 0 0 0 2587000 0 0 3011100 0 0 0 0 0 0 0 553 881 465 465 1997 2275;2276 6538;6539;6540 6878;6879;6880 6540 6880 20190902_JH_MUT_Ubi_3 13295 6539 6879 20190902_JH_MUT_Ubi_2 14560 6539 6879 20190902_JH_MUT_Ubi_2 14560 sp|P49327|FAS_HUMAN 329 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 130.007 5.50388E-08 130.01 93.985 130.01 1 120.766 5.04592E-06 120.77 1 130.007 5.50388E-08 130.01 1 M ATRQEPLLIGSTKSNMGHPEPASGLAALAKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX SNM(1)GHPEPASGLAALAK SNM(130.01)GHPEPASGLAALAK 3 3 1.1339 5624100 5624100 0 0 NaN 0 0 0 2855500 2768600 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2855500 0 0 2768600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 554 881 329 329 4087 4639 12929;12930 13556;13557 12930 13557 20190902_JH_EV_Ubi_3 6472 12930 13557 20190902_JH_EV_Ubi_3 6472 12930 13557 20190902_JH_EV_Ubi_3 6472 sp|P49327|FAS_HUMAN 680 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 45.6957 0.0184907 45.696 9.4496 45.696 1 45.6957 0.0184907 45.696 2 M LRKEGVFAKEVRTGGMAFHSYFMEAIAPPLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP TGGM(1)AFHSYFM(1)EAIAPPLLQELK TGGM(45.7)AFHSYFM(45.7)EAIAPPLLQELK 4 3 1.296 922370 0 922370 0 NaN 0 922370 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 922370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 555 881 680 680 4373 4957 13837 14520 13837 14520 20190821_JH_MUT_Ubi 12715 13837 14520 20190821_JH_MUT_Ubi 12715 13837 14520 20190821_JH_MUT_Ubi 12715 sp|P49327|FAS_HUMAN 687 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 45.6957 0.0184907 45.696 9.4496 45.696 1 45.6957 0.0184907 45.696 2 M AKEVRTGGMAFHSYFMEAIAPPLLQELKKVI X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPXXX TGGM(1)AFHSYFM(1)EAIAPPLLQELK TGGM(45.7)AFHSYFM(45.7)EAIAPPLLQELK 11 3 1.296 922370 0 922370 0 NaN 0 922370 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 922370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556 881 687 687 4373 4957 13837 14520 13837 14520 20190821_JH_MUT_Ubi 12715 13837 14520 20190821_JH_MUT_Ubi 12715 13837 14520 20190821_JH_MUT_Ubi 12715 sp|P49327|FAS_HUMAN 1159 sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3 1 97.7129 7.09234E-05 97.713 74.731 97.713 1 63.0559 0.00641674 63.056 1 97.7129 7.09234E-05 97.713 1 M LVQALQTKVTQQGLKMVVPGLDGAQIPRDPS X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX VTQQGLKM(1)VVPGLDGAQIPR VTQQGLKM(97.71)VVPGLDGAQIPR 8 3 -1.6779 9198600 9198600 0 0 NaN 0 4710800 0 0 0 0 4487800 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 4710800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4487800 0 0 0 0 0 0 0 0 557 881 1159 1159 5034 5716 16231;16232 17062;17063 16232 17063 20190902_JH_MUT_Ubi_3 9398 16232 17063 20190902_JH_MUT_Ubi_3 9398 16232 17063 20190902_JH_MUT_Ubi_3 9398 sp|P49368-2|TCPG_HUMAN;sp|P49368|TCPG_HUMAN 1;1 sp|P49368-2|TCPG_HUMAN sp|P49368-2|TCPG_HUMAN sp|P49368-2|TCPG_HUMAN Isoform 2 of T-complex protein 1 subunit gamma OS=Homo sapiens OX=9606 GN=CCT3;sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens OX=9606 GN=CCT3 PE=1 SV=4 1 94.781 0.012465 101.61 62.809 94.781 1 101.608 0.0160193 101.61 1 97.6306 0.012465 97.631 1 94.781 0.0290637 94.781 2 M _______________MMGHRPVLVLSQNTKR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)M(1)GHRPVLVLSQNTK M(94.78)M(94.78)GHRPVLVLSQNTK 1 3 -0.85622 50469000 0 50469000 0 24.797 0 0 21551000 0 0 8892700 0 0 20026000 NaN NaN NaN NaN NaN NaN NaN NaN 9.8392 0 0 0 0 0 0 0 21551000 0 0 0 0 0 0 0 0 8892700 0 0 0 0 0 0 0 0 20026000 0 558 882 1 1 2947 3349;3350 9488;9489;9490 9988;9989;9990 9490 9990 20190902_JH_WT_Ubi_3 7203 9489 9989 20190821_JH_WT_Ubi 5604 9488 9988 20190902_JH_MUT_Ubi_2 6375 sp|P49368-2|TCPG_HUMAN;sp|P49368|TCPG_HUMAN 2;2 sp|P49368-2|TCPG_HUMAN sp|P49368-2|TCPG_HUMAN sp|P49368-2|TCPG_HUMAN Isoform 2 of T-complex protein 1 subunit gamma OS=Homo sapiens OX=9606 GN=CCT3;sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens OX=9606 GN=CCT3 PE=1 SV=4 1 94.781 0.012465 101.61 62.809 94.781 1 101.608 0.0160193 101.61 1 97.6306 0.012465 97.631 1 94.781 0.0131593 94.781 1;2 M ______________MMGHRPVLVLSQNTKRE X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX M(1)M(1)GHRPVLVLSQNTK M(94.78)M(94.78)GHRPVLVLSQNTK 2 3 -0.85622 54227000 3757200 50469000 0 26.643 0 0 21551000 0 0 8892700 0 0 23783000 NaN NaN NaN NaN NaN NaN NaN NaN 11.685 0 0 0 0 0 0 0 21551000 0 0 0 0 0 0 0 0 8892700 0 0 0 0 0 0 0 3757200 20026000 0 559 882 2 2 2947 3349;3350 9488;9489;9490;9491 9988;9989;9990;9991 9490 9990 20190902_JH_WT_Ubi_3 7203 9489 9989 20190821_JH_WT_Ubi 5604 9488 9988 20190902_JH_MUT_Ubi_2 6375 sp|P49411|EFTU_HUMAN 137 sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial OS=Homo sapiens OX=9606 GN=TUFM PE=1 SV=2 1 171.909 6.90135E-44 171.91 127.6 171.91 1 158.118 1.49234E-27 158.12 1 40.92 0.0173527 40.92 1 171.909 6.90135E-44 171.91 1;2 M YAHTDCPGHADYVKNMITGTAPLDGCILVVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)ITGTAPLDGCILVVAANDGPM(1)PQTR NM(171.91)ITGTAPLDGCILVVAANDGPM(171.91)PQTR 2 3 0.13497 13058000 1157200 11900000 0 NaN 0 0 4987300 0 0 0 0 3958300 4112100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4987300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3958300 0 1157200 2954900 0 560 883 137 137 3161 3611;3612 10171;10172;10173;10174 10708;10709;10710;10711;10712 10173 10710 20190902_JH_WT_Ubi_3 13551 10173 10710 20190902_JH_WT_Ubi_3 13551 10173 10710 20190902_JH_WT_Ubi_3 13551 sp|P49411|EFTU_HUMAN 158 sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial OS=Homo sapiens OX=9606 GN=TUFM PE=1 SV=2 1 171.909 6.90135E-44 171.91 127.6 171.91 1 158.118 1.49234E-27 158.12 1 40.92 0.0173527 40.92 1 171.909 6.90135E-44 171.91 2 M PLDGCILVVAANDGPMPQTREHLLLARQIGV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX NM(1)ITGTAPLDGCILVVAANDGPM(1)PQTR NM(171.91)ITGTAPLDGCILVVAANDGPM(171.91)PQTR 23 3 0.13497 11900000 0 11900000 0 NaN 0 0 4987300 0 0 0 0 3958300 2954900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 4987300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3958300 0 0 2954900 0 561 883 158 158 3161 3611;3612 10171;10172;10173 10708;10709;10710 10173 10710 20190902_JH_WT_Ubi_3 13551 10173 10710 20190902_JH_WT_Ubi_3 13551 10173 10710 20190902_JH_WT_Ubi_3 13551 sp|P49411|EFTU_HUMAN 442 sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial OS=Homo sapiens OX=9606 GN=TUFM PE=1 SV=2 1 46.7462 7.32125E-203 309.49 244.26 46.746 1 309.491 7.32125E-203 309.49 1 46.7462 0.0307992 46.746 1 135.137 1.75776E-10 135.14 1 M GNRTIGTGLVTNTLAMTEEEKNIKWG_____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPXXXXXXX TIGTGLVTNTLAM(1)TEEEKNIK TIGTGLVTNTLAM(46.75)TEEEKNIK 13 2 0.15082 14691000 14691000 0 0 NaN 0 0 8494200 0 0 0 0 6197000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8494200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6197000 0 0 0 0 0 562 883 442 442 4421;4422 5016;5017 14019;14020;14021 14717;14718;14719 14021 14719 20190902_JH_MUT_Ubi_2 12641 14019 14717 20190821_JH_WT_Ubi 9715 14019 14717 20190821_JH_WT_Ubi 9715 sp|P49447|CY561_HUMAN 237 sp|P49447|CY561_HUMAN sp|P49447|CY561_HUMAN sp|P49447|CY561_HUMAN Cytochrome b561 OS=Homo sapiens OX=9606 GN=CYB561 PE=1 SV=2 1 108.488 8.96412E-34 165 133.38 108.49 1 152.265 8.00988E-26 152.27 1 71.4921 0.00142944 71.492 1 116.939 5.79233E-12 116.94 1 64.2571 8.96412E-34 165 1 123.87 6.92794E-15 123.87 1 88.4183 4.59821E-06 88.418 1 101.763 1.95184E-09 101.76 1 108.488 5.67978E-10 108.49 1 M ADWKRPSQAEEQALSMDFKTLTEGDSPGSQ_ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPX RPSQAEEQALSM(1)DFKTLTEGDSPGSQ RPSQAEEQALSM(108.49)DFKTLTEGDSPGSQ 12 3 -0.084605 25848000 25848000 0 0 1.0707 5766800 2707300 0 2156400 1935600 4765000 2754400 2290600 1993400 1.0921 0.67741 0 NaN 2.4022 NaN 1.34 1.1755 NaN 5766800 0 0 2707300 0 0 0 0 0 2156400 0 0 1935600 0 0 4765000 0 0 2754400 0 0 2290600 0 0 1993400 0 0 563 886 237 237 3792 4307 11986;11987;11988;11989;11990;11991;11992;11993;11994 12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581;12582 11994 12582 20190902_JH_WT_Ubi_3 11210 11988 12575 20190902_JH_EV_Ubi_3 9750 11988 12575 20190902_JH_EV_Ubi_3 9750 sp|P49748-2|ACADV_HUMAN;sp|P49748|ACADV_HUMAN;sp|P49748-3|ACADV_HUMAN 147;169;192 sp|P49748-2|ACADV_HUMAN sp|P49748-2|ACADV_HUMAN sp|P49748-2|ACADV_HUMAN Isoform 2 of Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADVL;sp|P49748|ACADV_HUMAN Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADVL PE= 1 46.368 0.0117209 46.368 15.684 46.368 1 46.368 0.0117209 46.368 1 M GLCNTQYARLVEIVGMHDLGVGITLGAHQSI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP LVEIVGM(1)HDLGVGITLGAHQSIGFK LVEIVGM(46.37)HDLGVGITLGAHQSIGFK 7 4 -0.92074 5717100 5717100 0 0 NaN 0 0 5717100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5717100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 564 891 147 147 2837 3219 9157 9638 9157 9638 20190821_JH_WT_Ubi 11071 9157 9638 20190821_JH_WT_Ubi 11071 9157 9638 20190821_JH_WT_Ubi 11071 sp|P49773|HINT1_HUMAN 96 sp|P49773|HINT1_HUMAN sp|P49773|HINT1_HUMAN sp|P49773|HINT1_HUMAN Histidine triad nucleotide-binding protein 1 OS=Homo sapiens OX=9606 GN=HINT1 PE=1 SV=2 1 93.2551 1.60774E-06 93.255 56.143 93.255 1 48.6557 0.0123759 48.656 1 93.2551 1.60774E-06 93.255 1 M GKKCAADLGLNKGYRMVVNEGSDGGQSVYHV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VVNEGSDGGQSVYHVHLHVLGGR M(93.26)VVNEGSDGGQSVYHVHLHVLGGR 1 3 0.13288 14634000 14634000 0 0 0.73347 0 0 0 0 0 0 1422600 13212000 0 NaN 0 NaN NaN NaN 0 0.1527 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1422600 0 0 13212000 0 0 0 0 0 565 893 96 96 2986 3412 9672;9673 10184;10185 9673 10185 20190902_JH_WT_Ubi_2 8493 9673 10185 20190902_JH_WT_Ubi_2 8493 9673 10185 20190902_JH_WT_Ubi_2 8493 sp|P49792|RBP2_HUMAN 1314 sp|P49792|RBP2_HUMAN sp|P49792|RBP2_HUMAN sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2 1 41.8708 0.0258496 41.871 10.256 41.871 1 41.8708 0.0258496 41.871 1 M EEAQSILKAPGTNVAMASNQAVRIVKEPTSH X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPXXXXX APGTNVAM(1)ASNQAVRIVK APGTNVAM(41.87)ASNQAVRIVK 8 3 0.44952 1204000 1204000 0 0 NaN 0 0 0 0 1204000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1204000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 566 896 1314 1314 240 279 814 886 814 886 20190902_JH_EV_Ubi_3 9006 814 886 20190902_JH_EV_Ubi_3 9006 814 886 20190902_JH_EV_Ubi_3 9006 sp|P50213-2|IDH3A_HUMAN;sp|P50213|IDH3A_HUMAN 32;110 sp|P50213-2|IDH3A_HUMAN sp|P50213-2|IDH3A_HUMAN sp|P50213-2|IDH3A_HUMAN Isoform 2 of Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3A;sp|P50213|IDH3A_HUMAN Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3A PE=1 SV=1 1 52.5002 0.0276944 52.5 22.192 52.5 1 52.5002 0.0276944 52.5 1 M LKGPLKTPIAAGHPSMNLLLRKTFDLYANVR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX TPIAAGHPSM(1)NLLLR TPIAAGHPSM(52.5)NLLLR 10 3 0.072364 4011700 4011700 0 0 NaN 0 0 4011700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4011700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567 901 32 32 4554 5172 14516 15258 14516 15258 20190821_JH_WT_Ubi 6752 14516 15258 20190821_JH_WT_Ubi 6752 14516 15258 20190821_JH_WT_Ubi 6752 sp|P50238|CRIP1_HUMAN 60 sp|P50238|CRIP1_HUMAN sp|P50238|CRIP1_HUMAN sp|P50238|CRIP1_HUMAN Cysteine-rich protein 1 OS=Homo sapiens OX=9606 GN=CRIP1 PE=1 SV=3 1 57.1063 0.000472407 104.94 46.668 57.106 1 89.6295 0.00167674 89.629 1 88.1008 0.00181566 88.101 1 77.6441 0.00442988 77.644 1 59.3058 0.0190482 59.306 1 72.9367 0.00679616 72.937 1 104.936 0.000472407 104.94 1 87.8305 0.00184022 87.831 1 57.1063 0.0218425 57.106 1 M EHEGKPYCNHPCYAAMFGPKGFGRGGAESHT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPXXXXXXXXXXX PYCNHPCYAAM(1)FGPK PYCNHPCYAAM(57.11)FGPK 11 3 -0.41709 50882000 50882000 0 0 2.5723 3745200 4055400 2919200 4091700 7446100 9996800 12398000 6229700 0 2.2941 1.1956 NaN 3.6416 NaN 2.3183 2.2735 1.611 NaN 3745200 0 0 4055400 0 0 2919200 0 0 4091700 0 0 7446100 0 0 9996800 0 0 12398000 0 0 6229700 0 0 0 0 0 568 903 60 60 3584 4085 11522;11523;11524;11525;11526;11527;11528;11529 12097;12098;12099;12100;12101;12102;12103;12104 11529 12104 20190902_JH_WT_Ubi_2 7784 11526 12101 20190902_JH_MUT_Ubi_2 6556 11526 12101 20190902_JH_MUT_Ubi_2 6556 sp|P50453|SPB9_HUMAN 41 sp|P50453|SPB9_HUMAN sp|P50453|SPB9_HUMAN sp|P50453|SPB9_HUMAN Serpin B9 OS=Homo sapiens OX=9606 GN=SERPINB9 PE=1 SV=1 1 78.2857 1.58784E-05 81.799 56.642 78.286 1 81.7989 1.58784E-05 81.799 1 78.2857 2.58709E-05 78.286 1 M HNVFCSPVSISSALAMVLLGAKGNTATQMAQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX ILCQDNPSHNVFCSPVSISSALAM(1)VLLGAK ILCQDNPSHNVFCSPVSISSALAM(78.29)VLLGAK 24 3 -1.279 6987900 6987900 0 0 NaN 0 0 5615200 0 0 0 0 1372700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5615200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1372700 0 0 0 0 0 569 906 41 41 2184 2489 7217;7218 7592;7593 7218 7593 20190902_JH_WT_Ubi_2 16362 7217 7592 20190821_JH_WT_Ubi 15748 7217 7592 20190821_JH_WT_Ubi 15748 sp|P50454|SERPH_HUMAN 204 sp|P50454|SERPH_HUMAN sp|P50454|SERPH_HUMAN sp|P50454|SERPH_HUMAN Serpin H1 OS=Homo sapiens OX=9606 GN=SERPINH1 PE=1 SV=2 1 92.2389 0.014654 92.239 41.147 92.239 1 92.2389 0.014654 92.239 1 M TKDVERTDGALLVNAMFFKPHWDEKFHHKMV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPXXXXXXXXXXXX TDGALLVNAM(1)FFK TDGALLVNAM(92.24)FFK 10 2 -0.38963 2472200 2472200 0 0 NaN 0 0 2472200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2472200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 570 907 204 204 4283 4860 13559 14223 13559 14223 20190821_JH_WT_Ubi 12309 13559 14223 20190821_JH_WT_Ubi 12309 13559 14223 20190821_JH_WT_Ubi 12309 sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN 1475;1475 sp|P50851-2|LRBA_HUMAN sp|P50851-2|LRBA_HUMAN sp|P50851-2|LRBA_HUMAN Isoform 2 of Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA;sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4 1 48.2765 0.0287662 50.088 22.534 48.277 1 50.0878 0.0287662 50.088 1 48.2765 0.0314417 48.277 1 M QHSQLKTRGDKALKPMHSLIPLGKSAAKSPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX PM(1)HSLIPLGKSAAK PM(48.28)HSLIPLGKSAAK 2 4 1.6058 4521200 4521200 0 0 NaN 0 0 0 0 0 1093000 0 3428100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1093000 0 0 0 0 0 3428100 0 0 0 0 0 571 910 1475 1475 3462 3948 11115;11116 11680;11681 11116 11681 20190902_JH_WT_Ubi_2 6397 11115 11680 20190902_JH_MUT_Ubi_2 5297 11115 11680 20190902_JH_MUT_Ubi_2 5297 sp|P50895|BCAM_HUMAN 610 sp|P50895|BCAM_HUMAN sp|P50895|BCAM_HUMAN sp|P50895|BCAM_HUMAN Basal cell adhesion molecule OS=Homo sapiens OX=9606 GN=BCAM PE=1 SV=2 1 65.1337 1.72127E-05 70.15 35.675 65.134 1 49.8084 0.000927774 49.808 1 51.5947 0.00030017 51.595 1 70.1496 1.72127E-05 70.15 1 65.1337 3.36868E-05 65.134 1 M LSHSGSEQPEQTGLLMGGASGGARGGSGGFG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX EKGAPPPGEPGLSHSGSEQPEQTGLLM(1)GGASGGAR EKGAPPPGEPGLSHSGSEQPEQTGLLM(65.13)GGASGGAR 27 4 -0.57493 27864000 27864000 0 0 NaN 9083100 0 0 8585900 0 6328300 3866400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 9083100 0 0 0 0 0 0 0 0 8585900 0 0 0 0 0 6328300 0 0 3866400 0 0 0 0 0 0 0 0 572 911 610 610 959 1082 3035;3036;3037;3038 3189;3190;3191;3192 3038 3192 20190902_JH_MUT_Ubi_3 6645 3037 3191 20190902_JH_MUT_Ubi_2 6999 3037 3191 20190902_JH_MUT_Ubi_2 6999 sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN 492;473;419 sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8 PE=1 SV=4;sp|P50990-2|TCPQ_HUMAN Isoform 2 of T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8;sp|P50990-3|TCPQ_HUMAN Isoform 3 of T-complex protein 1 s 1 77.1237 0.0280098 77.124 34.786 77.124 1 77.1237 0.0280098 77.124 1 M NVGLDIEAEVPAVKDMLEAGILDTYLGKYWA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX DM(1)LEAGILDTYLGK DM(77.12)LEAGILDTYLGK 2 2 0.37827 2155600 2155600 0 0 NaN 0 0 2155600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2155600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 573 912 492 492 621 712 1946 2065 1946 2065 20190821_JH_WT_Ubi 13831 1946 2065 20190821_JH_WT_Ubi 13831 1946 2065 20190821_JH_WT_Ubi 13831 sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN 221;202;148 sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8 PE=1 SV=4;sp|P50990-2|TCPQ_HUMAN Isoform 2 of T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8;sp|P50990-3|TCPQ_HUMAN Isoform 3 of T-complex protein 1 s 1 81.6511 9.85275E-05 102.64 68.458 81.651 1 102.637 9.85275E-05 102.64 1 93.4242 0.000278951 93.424 1 56.4598 0.0137685 56.46 1 90.5608 0.000350282 90.561 1 99.2379 0.000134378 99.238 1 81.6511 0.000966166 81.651 1 M KILGSGISSSSVLHGMVFKKETEGDVTSVKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX ILGSGISSSSVLHGM(1)VFK ILGSGISSSSVLHGM(81.65)VFK 15 3 -0.9139 128970000 128970000 0 0 2.9563 0 10046000 46245000 4083000 0 23989000 23916000 20692000 0 NaN 1.124 2.345 NaN NaN 2.2975 5.2853 NaN NaN 0 0 0 10046000 0 0 46245000 0 0 4083000 0 0 0 0 0 23989000 0 0 23916000 0 0 20692000 0 0 0 0 0 574 912 221 221 2195 2502 7244;7245;7246;7247;7248;7249 7620;7621;7622;7623;7624;7625 7249 7625 20190902_JH_WT_Ubi_2 10913 7245 7621 20190821_JH_MUT_Ubi 8611 7245 7621 20190821_JH_MUT_Ubi 8611 sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN 55;36 sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8 PE=1 SV=4;sp|P50990-2|TCPQ_HUMAN Isoform 2 of T-complex protein 1 subunit theta OS=Homo sapiens OX=9606 GN=CCT8 1 82.0101 0.00034076 82.01 62.953 82.01 1 68.4105 0.00225063 68.41 1 55.9069 0.00887633 55.907 1 60.9384 0.00518168 60.938 1 43.2605 0.0253479 43.261 1 40.0473 0.0305706 40.047 1 82.0101 0.00034076 82.01 1 M AQTTRTAYGPNGMNKMVINHLEKLFVTNDAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VINHLEKLFVTNDAATILR M(82.01)VINHLEKLFVTNDAATILR 1 4 -1.0061 13930000 13930000 0 0 NaN 0 974170 4675800 0 0 2671800 808950 2141100 2658200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 974170 0 0 4675800 0 0 0 0 0 0 0 0 2671800 0 0 808950 0 0 2141100 0 0 2658200 0 0 575 912 55 55 2980 3400 9616;9617;9618;9619;9620;9621 10121;10122;10123;10124;10125;10126 9621 10126 20190902_JH_WT_Ubi_3 12416 9621 10126 20190902_JH_WT_Ubi_3 12416 9621 10126 20190902_JH_WT_Ubi_3 12416 sp|P50991|TCPD_HUMAN;sp|P50991-2|TCPD_HUMAN 458;428 sp|P50991|TCPD_HUMAN sp|P50991|TCPD_HUMAN sp|P50991|TCPD_HUMAN T-complex protein 1 subunit delta OS=Homo sapiens OX=9606 GN=CCT4 PE=1 SV=4;sp|P50991-2|TCPD_HUMAN Isoform 2 of T-complex protein 1 subunit delta OS=Homo sapiens OX=9606 GN=CCT4 1 51.2197 7.59329E-05 71.506 50.215 51.22 1 71.5062 7.59329E-05 71.506 1 51.2197 0.00209762 51.22 1 M LSGMESYCVRAFADAMEVIPSTLAENAGLNP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP AFADAM(1)EVIPSTLAENAGLNPISTVTELR AFADAM(51.22)EVIPSTLAENAGLNPISTVTELR 6 3 -0.74315 4562500 4562500 0 0 NaN 0 0 0 0 0 0 0 2795300 1767300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2795300 0 0 1767300 0 0 576 913 458 458 106 120 370;371 409;410 371 410 20190902_JH_WT_Ubi_3 15593 370 409 20190902_JH_WT_Ubi_2 16133 370 409 20190902_JH_WT_Ubi_2 16133 sp|P51170|SCNNG_HUMAN 1 sp|P51170|SCNNG_HUMAN sp|P51170|SCNNG_HUMAN sp|P51170|SCNNG_HUMAN Amiloride-sensitive sodium channel subunit gamma OS=Homo sapiens OX=9606 GN=SCNN1G PE=1 SV=4 1 48.6016 0.0201225 48.602 12.268 48.602 1 48.6016 0.0201225 48.602 1 M _______________MAPGEKIKAKIKKNLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;GlyGly (K);X;X;X;GlyGly (K);GlyGly (K);X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPXXXXXX M(1)APGEKIKAK M(48.6)APGEKIKAK 1 3 0.002892 703770 703770 0 0 NaN 0 0 0 703770 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 703770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 577 917 1 1 2880 3269 9281 9767 9281 9767 20190902_JH_EV_Ubi_2 4069 9281 9767 20190902_JH_EV_Ubi_2 4069 9281 9767 20190902_JH_EV_Ubi_2 4069 sp|P51553-2|IDH3G_HUMAN;sp|P51553|IDH3G_HUMAN 59;59 sp|P51553-2|IDH3G_HUMAN sp|P51553-2|IDH3G_HUMAN sp|P51553-2|IDH3G_HUMAN Isoform 2 of Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3G;sp|P51553|IDH3G_HUMAN Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3G PE=1 SV=1 1 53.7733 0.0119522 53.773 17.647 53.773 1 53.7733 0.0119522 53.773 2 M TIPPSAKYGGRHTVTMIPGDGIGPELMLHVK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP HTVTM(1)IPGDGIGPELM(1)LHVK HTVTM(53.77)IPGDGIGPELM(53.77)LHVK 5 3 -0.62696 1974100 0 1974100 0 NaN 0 0 0 0 0 0 0 1974100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1974100 0 0 0 0 578 918 59 59 2014 2297 6620 6965 6620 6965 20190902_JH_WT_Ubi_2 10558 6620 6965 20190902_JH_WT_Ubi_2 10558 6620 6965 20190902_JH_WT_Ubi_2 10558 sp|P51553-2|IDH3G_HUMAN;sp|P51553|IDH3G_HUMAN 70;70 sp|P51553-2|IDH3G_HUMAN sp|P51553-2|IDH3G_HUMAN sp|P51553-2|IDH3G_HUMAN Isoform 2 of Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3G;sp|P51553|IDH3G_HUMAN Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens OX=9606 GN=IDH3G PE=1 SV=1 1 53.7733 0.0119522 53.773 17.647 53.773 1 53.7733 0.0119522 53.773 2 M HTVTMIPGDGIGPELMLHVKSVFRHACVPVD X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX HTVTM(1)IPGDGIGPELM(1)LHVK HTVTM(53.77)IPGDGIGPELM(53.77)LHVK 16 3 -0.62696 1974100 0 1974100 0 NaN 0 0 0 0 0 0 0 1974100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1974100 0 0 0 0 579 918 70 70 2014 2297 6620 6965 6620 6965 20190902_JH_WT_Ubi_2 10558 6620 6965 20190902_JH_WT_Ubi_2 10558 6620 6965 20190902_JH_WT_Ubi_2 10558 sp|P51636|CAV2_HUMAN;sp|P51636-3|CAV2_HUMAN 14;14 sp|P51636|CAV2_HUMAN sp|P51636|CAV2_HUMAN sp|P51636|CAV2_HUMAN Caveolin-2 OS=Homo sapiens OX=9606 GN=CAV2 PE=1 SV=2;sp|P51636-3|CAV2_HUMAN Isoform C of Caveolin-2 OS=Homo sapiens OX=9606 GN=CAV2 1 44.8436 0.00102594 51.025 30.574 44.844 1 44.8436 0.00379127 46.194 1 47.979 0.00344271 47.979 1 51.0253 0.00102594 51.025 1 41.455 0.00731258 41.455 1 M __MGLETEKADVQLFMDDDSYSHHSGLEYAD X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP GLETEKADVQLFM(1)DDDSYSHHSGLEYADPEK GLETEKADVQLFM(44.84)DDDSYSHHSGLEYADPEK 13 4 -0.41683 39112000 39112000 0 0 2.2707 9093000 0 9689800 0 0 0 0 0 0 NaN NaN 0.84409 NaN NaN 0 NaN 0 0 9093000 0 0 0 0 0 9689800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 580 921 14 14 1581 1801;1802 5062;5063;5064;5065;5066 5329;5330;5331;5332;5333 5066 5333 20190821_JH_EV_Ubi 10563 5063 5330 20190902_JH_EV_Ubi_3 9004 5063 5330 20190902_JH_EV_Ubi_3 9004 sp|P51809-3|VAMP7_HUMAN;sp|P51809|VAMP7_HUMAN;sp|P51809-2|VAMP7_HUMAN 86;127;127 sp|P51809-3|VAMP7_HUMAN sp|P51809-3|VAMP7_HUMAN sp|P51809-3|VAMP7_HUMAN Isoform 3 of Vesicle-associated membrane protein 7 OS=Homo sapiens OX=9606 GN=VAMP7;sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens OX=9606 GN=VAMP7 PE=1 SV=3;sp|P51809-2|VAMP7_HUMAN Isoform 2 of Vesicle- 1 55.5459 0.0219164 55.546 24.862 55.546 1 55.5459 0.0219164 55.546 M AQLKHHSENKGLDKVMETQAQVDELKGIMVR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)ETQAQVDELKGIM(1)VR VM(55.55)ETQAQVDELKGIM(55.55)VR 2 3 -0.90338 1482800 0 1482800 0 NaN 0 0 0 0 0 1482800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1482800 0 0 0 0 0 0 0 0 0 0 581 925 86 86 4941 5611 15880 16686 15880 16686 20190902_JH_MUT_Ubi_2 8283 15880 16686 20190902_JH_MUT_Ubi_2 8283 15880 16686 20190902_JH_MUT_Ubi_2 8283 sp|P51809-3|VAMP7_HUMAN;sp|P51809|VAMP7_HUMAN;sp|P51809-2|VAMP7_HUMAN 99;140;140 sp|P51809-3|VAMP7_HUMAN sp|P51809-3|VAMP7_HUMAN sp|P51809-3|VAMP7_HUMAN Isoform 3 of Vesicle-associated membrane protein 7 OS=Homo sapiens OX=9606 GN=VAMP7;sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens OX=9606 GN=VAMP7 PE=1 SV=3;sp|P51809-2|VAMP7_HUMAN Isoform 2 of Vesicle- 1 55.5459 0.0219164 55.546 24.862 55.546 1 55.5459 0.0219164 55.546 M KVMETQAQVDELKGIMVRNIDLVAQRGERLE X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX VM(1)ETQAQVDELKGIM(1)VR VM(55.55)ETQAQVDELKGIM(55.55)VR 15 3 -0.90338 1482800 0 1482800 0 NaN 0 0 0 0 0 1482800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1482800 0 0 0 0 0 0 0 0 0 0 582 925 99 99 4941 5611 15880 16686 15880 16686 20190902_JH_MUT_Ubi_2 8283 15880 16686 20190902_JH_MUT_Ubi_2 8283 15880 16686 20190902_JH_MUT_Ubi_2 8283 sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN 193;186;209 sp|P51858|HDGF_HUMAN sp|P51858|HDGF_HUMAN sp|P51858|HDGF_HUMAN Hepatoma-derived growth factor OS=Homo sapiens OX=9606 GN=HDGF PE=1 SV=1;sp|P51858-2|HDGF_HUMAN Isoform 2 of Hepatoma-derived growth factor OS=Homo sapiens OX=9606 GN=HDGF;sp|P51858-3|HDGF_HUMAN Isoform 3 of Hepatoma-derived growth fac 1 66.2462 0.0247282 66.246 41.716 66.246 1 66.2462 0.0247282 66.246 1 M EEKEAATLEVERPLPMEVEKNSTPSEPGSGR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPXXXXXXXXXXX EAATLEVERPLPM(1)EVEK EAATLEVERPLPM(66.25)EVEK 13 3 1.1604 14905000 14905000 0 0 NaN 0 0 0 0 0 0 0 0 14905000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14905000 0 0 583 928 193 193 783 887 2454 2584 2454 2584 20190902_JH_WT_Ubi_3 8877 2454 2584 20190902_JH_WT_Ubi_3 8877 2454 2584 20190902_JH_WT_Ubi_3 8877 sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN 33;26;49 sp|P51858|HDGF_HUMAN sp|P51858|HDGF_HUMAN sp|P51858|HDGF_HUMAN Hepatoma-derived growth factor OS=Homo sapiens OX=9606 GN=HDGF PE=1 SV=1;sp|P51858-2|HDGF_HUMAN Isoform 2 of Hepatoma-derived growth factor OS=Homo sapiens OX=9606 GN=HDGF;sp|P51858-3|HDGF_HUMAN Isoform 3 of Hepatoma-derived growth fac 1 59.2475 0.0273075 59.248 14.634 59.248 1 59.2475 0.0273075 59.248 1 M AKMKGYPHWPARIDEMPEAAVKSTANKYQVF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPXXXX IDEM(1)PEAAVKSTANK IDEM(59.25)PEAAVKSTANK 4 3 -1.3748 1223000 1223000 0 0 NaN 0 0 0 0 0 0 1223000 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1223000 0 0 0 0 0 0 0 0 584 928 33 33 2078 2375 6902 7266 6902 7266 20190902_JH_MUT_Ubi_3 5014 6902 7266 20190902_JH_MUT_Ubi_3 5014 6902 7266 20190902_JH_MUT_Ubi_3 5014 sp|P52565|GDIR1_HUMAN 145 sp|P52565|GDIR1_HUMAN sp|P52565|GDIR1_HUMAN sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3 1 54.066 3.88931E-11 183.67 126.5 54.066 1 183.673 3.88931E-11 183.67 1 54.066 0.0329009 54.066 M QHTYRKGVKIDKTDYMVGSYGPRAEEYEFLT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPXXXXXXXX TDYM(1)VGSYGPR TDYM(54.07)VGSYGPR 4 2 -1.0131 39980000 39980000 0 0 NaN 0 0 21258000 0 0 0 0 0 18721000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 21258000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18721000 0 0 585 934 145 145 4301 4880 13613;13614 14280;14281 13614 14281 20190902_JH_WT_Ubi_3 7760 13613 14280 20190821_JH_WT_Ubi 6032 13613 14280 20190821_JH_WT_Ubi 6032 sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN 468;507;508 sp|P52569|CTR2_HUMAN sp|P52569|CTR2_HUMAN sp|P52569|CTR2_HUMAN Cationic amino acid transporter 2 OS=Homo sapiens OX=9606 GN=SLC7A2 PE=1 SV=2;sp|P52569-2|CTR2_HUMAN Isoform 2 of Cationic amino acid transporter 2 OS=Homo sapiens OX=9606 GN=SLC7A2;sp|P52569-3|CTR2_HUMAN Isoform 3 of Cationic amino ac 1 201.305 9.94884E-37 201.3 153.68 201.3 1 57.4342 0.0360643 57.434 1 174.94 2.33232E-20 174.94 1 162.482 9.48633E-15 162.48 1 69.3521 0.0174098 69.352 1 87.4985 0.00361236 87.498 1 96.8656 0.00217454 96.866 1 141.646 2.67344E-07 141.65 1 201.305 9.94884E-37 201.3 1 M GSSPRVTSKSESQVTMLQRQGFSMRTLFCPS X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPXXXXXXXXXXXX VTSKSESQVTM(1)LQR VTSKSESQVTM(201.3)LQR 11 3 -1.0211 48568000 48568000 0 0 8.9766 563130 1753800 5692700 0 1814200 3685800 3031800 15956000 16071000 NaN NaN NaN NaN NaN NaN 2.6699 NaN 3.7593 563130 0 0 1753800 0 0 5692700 0 0 0 0 0 1814200 0 0 3685800 0 0 3031800 0 0 15956000 0 0 16071000 0 0 586 935 468 468 5036 5718 16239;16240;16241;16242;16243;16244;16245;16246 17070;17071;17072;17073;17074;17075;17076;17077 16246 17077 20190902_JH_WT_Ubi_3 5535 16246 17077 20190902_JH_WT_Ubi_3 5535 16246 17077 20190902_JH_WT_Ubi_3 5535 sp|P52597|HNRPF_HUMAN 293 sp|P52597|HNRPF_HUMAN sp|P52597|HNRPF_HUMAN sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3 1 41.0881 0.00198366 71.601 47.966 41.088 1 47.5678 0.0197311 47.568 1 71.6009 0.00198366 71.601 1 41.0881 0.0301568 41.088 1 M DSEFTVQSTTGHCVHMRGLPYKATENDIYNF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YGDSEFTVQSTTGHCVHM(1)R YGDSEFTVQSTTGHCVHM(41.09)R 18 4 0.36162 11502000 11502000 0 0 5.6473 0 0 2920400 0 0 0 0 5391000 3190700 NaN NaN NaN NaN NaN NaN NaN 2.6469 NaN 0 0 0 0 0 0 2920400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5391000 0 0 3190700 0 0 587 937 293 293 5137 5842 16574;16575;16576 17419;17420;17421 16576 17421 20190902_JH_WT_Ubi_3 6482 16575 17420 20190902_JH_WT_Ubi_2 6714 16575 17420 20190902_JH_WT_Ubi_2 6714 sp|P52815|RM12_HUMAN 100 sp|P52815|RM12_HUMAN sp|P52815|RM12_HUMAN sp|P52815|RM12_HUMAN 39S ribosomal protein L12, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL12 PE=1 SV=2 1 51.4437 0.000444052 51.444 28.884 51.444 1 51.4437 0.000444052 51.444 2 M LLKKTLKIQDVGLVPMGGVMSGAVPAAAAQE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP IQDVGLVPM(1)GGVM(1)SGAVPAAAAQEAVEEDIPIAK IQDVGLVPM(51.44)GGVM(51.44)SGAVPAAAAQEAVEEDIPIAK 9 3 1.6076 2332000 0 2332000 0 NaN 0 0 0 0 0 0 0 0 2332000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2332000 0 588 940 100 100 2235 2545 7349 7728 7349 7728 20190902_JH_WT_Ubi_3 14624 7349 7728 20190902_JH_WT_Ubi_3 14624 7349 7728 20190902_JH_WT_Ubi_3 14624 sp|P52815|RM12_HUMAN 104 sp|P52815|RM12_HUMAN sp|P52815|RM12_HUMAN sp|P52815|RM12_HUMAN 39S ribosomal protein L12, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL12 PE=1 SV=2 1 51.4437 0.000444052 51.444 28.884 51.444 1 51.4437 0.000444052 51.444 2 M TLKIQDVGLVPMGGVMSGAVPAAAAQEAVEE X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP IQDVGLVPM(1)GGVM(1)SGAVPAAAAQEAVEEDIPIAK IQDVGLVPM(51.44)GGVM(51.44)SGAVPAAAAQEAVEEDIPIAK 13 3 1.6076 2332000 0 2332000 0 NaN 0 0 0 0 0 0 0 0 2332000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2332000 0 589 940 104 104 2235 2545 7349 7728 7349 7728 20190902_JH_WT_Ubi_3 14624 7349 7728 20190902_JH_WT_Ubi_3 14624 7349 7728 20190902_JH_WT_Ubi_3 14624 sp|P52907|CAZA1_HUMAN 250 sp|P52907|CAZA1_HUMAN sp|P52907|CAZA1_HUMAN sp|P52907|CAZA1_HUMAN F-actin-capping protein subunit alpha-1 OS=Homo sapiens OX=9606 GN=CAPZA1 PE=1 SV=3 1 114.852 2.25527E-12 114.85 91.797 114.85 1 44.8436 0.0150363 44.844 1 114.852 2.25527E-12 114.85 1 M AENEYQTAISENYQTMSDTTFKALRRQLPVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX IIENAENEYQTAISENYQTM(1)SDTTFK IIENAENEYQTAISENYQTM(114.85)SDTTFK 20 3 -0.38657 2568000 2568000 0 0 NaN 0 0 1297300 0 0 0 0 1270700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1297300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1270700 0 0 0 0 0 590 941 250 250 2148 2449 7118;7119 7491;7492 7119 7492 20190902_JH_WT_Ubi_2 12095 7119 7492 20190902_JH_WT_Ubi_2 12095 7119 7492 20190902_JH_WT_Ubi_2 12095 sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN 857;847;586 sp|P53396|ACLY_HUMAN sp|P53396|ACLY_HUMAN sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens OX=9606 GN=ACLY PE=1 SV=3;sp|P53396-2|ACLY_HUMAN Isoform 2 of ATP-citrate synthase OS=Homo sapiens OX=9606 GN=ACLY;sp|P53396-3|ACLY_HUMAN Isoform 3 of ATP-citrate synthase OS=Homo sapiens OX=9606 GN 1 142.974 1.62169E-09 142.97 91.099 142.97 1 142.974 1.62169E-09 142.97 1 M TSICDERGQELIYAGMPITEVFKEEMGIGGV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPXXXXXXXX GQELIYAGM(1)PITEVFK GQELIYAGM(142.97)PITEVFK 9 2 -0.10698 2277600 2277600 0 0 NaN 0 0 2277600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2277600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 591 946 857 857 1664 1894 5312 5593 5312 5593 20190821_JH_WT_Ubi 12515 5312 5593 20190821_JH_WT_Ubi 12515 5312 5593 20190821_JH_WT_Ubi 12515 sp|P53597|SUCA_HUMAN 327 sp|P53597|SUCA_HUMAN sp|P53597|SUCA_HUMAN sp|P53597|SUCA_HUMAN Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG1 PE=1 SV=4 1 124.101 1.05841E-16 135.55 108.58 124.1 1 79.0251 0.000162743 79.025 1 135.546 1.05841E-16 135.55 1 82.8854 8.77895E-05 82.885 1 125.775 2.37995E-12 125.78 1 124.703 1.84648E-12 124.7 1 124.101 2.80525E-12 124.1 1 M KEKISALQSAGVVVSMSPAQLGTTIYKEFEK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPXXXX ISALQSAGVVVSM(1)SPAQLGTTIYK ISALQSAGVVVSM(124.1)SPAQLGTTIYK 13 3 -0.34036 29687000 29687000 0 0 2.683 0 3814200 8524200 0 0 3603500 4683900 5009700 4051900 NaN 0.90466 1.2446 NaN NaN NaN NaN NaN NaN 0 0 0 3814200 0 0 8524200 0 0 0 0 0 0 0 0 3603500 0 0 4683900 0 0 5009700 0 0 4051900 0 0 592 948 327 327 2251 2561 7374;7375;7376;7377;7378;7379 7753;7754;7755;7756;7757;7758 7379 7758 20190902_JH_WT_Ubi_3 13168 7377 7756 20190821_JH_WT_Ubi 12155 7377 7756 20190821_JH_WT_Ubi 12155 sp|P53618|COPB_HUMAN 859 sp|P53618|COPB_HUMAN sp|P53618|COPB_HUMAN sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens OX=9606 GN=COPB1 PE=1 SV=3 1 71.6009 7.70157E-18 148.52 107.55 71.601 1 148.517 7.70157E-18 148.52 1 81.0104 0.000713832 81.01 1 63.8937 0.00523143 63.894 1 71.6009 0.00245652 71.601 1 M WAEFEWENKVTVNTNMVDLNDYLQHILKSTN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPXXX VTVNTNM(1)VDLNDYLQHILK VTVNTNM(71.6)VDLNDYLQHILK 7 3 0.2914 20335000 20335000 0 0 NaN 10128000 4743400 0 2414200 0 3049000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 10128000 0 0 4743400 0 0 0 0 0 2414200 0 0 0 0 0 3049000 0 0 0 0 0 0 0 0 0 0 0 593 949 859 859 5042 5727 16268;16269;16270;16271 17099;17100;17101;17102 16271 17102 20190902_JH_MUT_Ubi_2 13766 16268 17099 20190821_JH_EV_Ubi 13017 16268 17099 20190821_JH_EV_Ubi 13017 sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN 314;314 sp|P53621|COPA_HUMAN sp|P53621|COPA_HUMAN sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens OX=9606 GN=COPA PE=1 SV=2;sp|P53621-2|COPA_HUMAN Isoform 2 of Coatomer subunit alpha OS=Homo sapiens OX=9606 GN=COPA 1 53.4544 4.88548E-06 113.73 68.688 53.454 1 113.735 4.88548E-06 113.73 1 53.4544 0.00423832 53.454 1 M AHPNLNLFAAGHDGGMIVFKLERERPAYAVH X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX FWVLAAHPNLNLFAAGHDGGM(1)IVFK FWVLAAHPNLNLFAAGHDGGM(53.45)IVFK 21 4 -0.37238 7291500 7291500 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 594 950 314 314 1343 1524;1525 4235;4236 4453;4454 4236 4454 20190902_JH_WT_Ubi_2 14471 4235 4453 20190821_JH_WT_Ubi 13276 4235 4453 20190821_JH_WT_Ubi 13276 sp|P53634|CATC_HUMAN 370 sp|P53634|CATC_HUMAN sp|P53634|CATC_HUMAN sp|P53634|CATC_HUMAN Dipeptidyl peptidase 1 OS=Homo sapiens OX=9606 GN=CTSC PE=1 SV=2 1 48.5673 0.0118016 48.567 32.868 48.567 1 48.5673 0.0118016 48.567 1 M CNEALMKLELVHHGPMAVAFEVYDDFLHYKK X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX LELVHHGPM(1)AVAFEVYDDFLHYK LELVHHGPM(48.57)AVAFEVYDDFLHYK 9 4 -0.04561 1770300 1770300 0 0 NaN 0 0 0 0 0 0 0 1770300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1770300 0 0 0 0 0 595 951 370 370 2573 2924 8357 8787 8357 8787 20190902_JH_WT_Ubi_2 13687 8357 8787 20190902_JH_WT_Ubi_2 13687 8357 8787 20190902_JH_WT_Ubi_2 13687 sp|P53634|CATC_HUMAN 360 sp|P53634|CATC_HUMAN sp|P53634|CATC_HUMAN sp|P53634|CATC_HUMAN Dipeptidyl peptidase 1 OS=Homo sapiens OX=9606 GN=CTSC PE=1 SV=2 1 138.051 8.5493E-16 138.05 120.9 138.05 1 138.051 8.5493E-16 138.05 1 M YHYVGGFYGGCNEALMKLELVHHGPMAVAFE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YYSSEYHYVGGFYGGCNEALM(1)K YYSSEYHYVGGFYGGCNEALM(138.05)K 21 3 1.8857 1814800 1814800 0 0 NaN 0 0 0 0 0 0 0 0 1814800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1814800 0 0 596 951 360 360 5224 5948 16869 17738 16869 17738 20190902_JH_WT_Ubi_3 10034 16869 17738 20190902_JH_WT_Ubi_3 10034 16869 17738 20190902_JH_WT_Ubi_3 10034 sp|P53675-2|CLH2_HUMAN;sp|P53675|CLH2_HUMAN 73;73 sp|P53675-2|CLH2_HUMAN sp|P53675-2|CLH2_HUMAN sp|P53675-2|CLH2_HUMAN Isoform 2 of Clathrin heavy chain 2 OS=Homo sapiens OX=9606 GN=CLTCL1;sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens OX=9606 GN=CLTCL1 PE=1 SV=2 1 49.4629 0.0264286 49.463 6.9428 49.463 1 49.4629 0.0264286 49.463 M PMAPIRRPISAESAIMNPASKVIALKAGKTL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX PISAESAIM(1)NPASKVIALK PISAESAIM(49.46)NPASKVIALK 9 3 1.5353 503800 503800 0 0 NaN 0 0 0 503800 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 503800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 597 952 73 73 3394 3875 10870 11434 10870 11434 20190902_JH_EV_Ubi_2 12019 10870 11434 20190902_JH_EV_Ubi_2 12019 10870 11434 20190902_JH_EV_Ubi_2 12019 sp|P53778-2|MK12_HUMAN;sp|P53778|MK12_HUMAN 120;120 sp|P53778-2|MK12_HUMAN sp|P53778-2|MK12_HUMAN sp|P53778-2|MK12_HUMAN Isoform 2 of Mitogen-activated protein kinase 12 OS=Homo sapiens OX=9606 GN=MAPK12;sp|P53778|MK12_HUMAN Mitogen-activated protein kinase 12 OS=Homo sapiens OX=9606 GN=MAPK12 PE=1 SV=3 1 91.5493 0.00543266 102.52 53.105 91.549 1 99.5681 0.00658615 99.568 1 102.524 0.00543266 102.52 1 91.5493 0.0131832 91.549 1 M FYLVMPFMGTDLGKLMKHEKLGEDRIQFLVY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX LM(1)KHEKLGEDR LM(91.55)KHEKLGEDR 2 3 -1.7649 91657000 91657000 0 0 NaN 8458800 22729000 0 0 0 60469000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 8458800 0 0 22729000 0 0 0 0 0 0 0 0 0 0 0 60469000 0 0 0 0 0 0 0 0 0 0 0 598 953 120 120 2718 3090 8814;8815;8816 9270;9271;9272;9273 8816 9273 20190902_JH_MUT_Ubi_2 5829 8815 9272 20190821_JH_MUT_Ubi 4486 8815 9272 20190821_JH_MUT_Ubi 4486 sp|P53794|SC5A3_HUMAN 639 sp|P53794|SC5A3_HUMAN sp|P53794|SC5A3_HUMAN sp|P53794|SC5A3_HUMAN Sodium/myo-inositol cotransporter OS=Homo sapiens OX=9606 GN=SLC5A3 PE=1 SV=2 1 44.4774 0.000287192 57.009 30.453 44.477 1 57.0088 0.000287192 57.009 1 44.4774 0.0033401 44.477 1 M AETPVDAYSNGQAALMGEKERKKETDDGGRY X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX EEGNPVASLGHSEAETPVDAYSNGQAALM(1)GEKER EEGNPVASLGHSEAETPVDAYSNGQAALM(44.48)GEKER 29 4 -1.3932 2888600 2888600 0 0 NaN 1738700 0 0 0 0 0 1149900 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1738700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1149900 0 0 0 0 0 0 0 0 599 954 639 639 854 964 2692;2693 2832;2833 2693 2833 20190902_JH_MUT_Ubi_3 8859 2692 2832 20190821_JH_EV_Ubi 8716 2692 2832 20190821_JH_EV_Ubi 8716 sp|P53999|TCP4_HUMAN 63 sp|P53999|TCP4_HUMAN sp|P53999|TCP4_HUMAN sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3 1 75.0433 0.019577 75.043 50.841 75.043 1 75.0433 0.019577 75.043 M ALSSSKQSSSSRDDNMFQIGKMRYVSVRDFK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPXXXXXXXXXX DDNM(1)FQIGK DDNM(75.04)FQIGK 4 2 -1.8691 1076700 1076700 0 0 NaN 0 0 1076700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1076700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600 957 63 63 418 492 1357 1447 1357 1447 20190821_JH_WT_Ubi 6732 1357 1447 20190821_JH_WT_Ubi 6732 1357 1447 20190821_JH_WT_Ubi 6732 sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN 75;75;75 sp|P54725-2|RD23A_HUMAN sp|P54725-2|RD23A_HUMAN sp|P54725-2|RD23A_HUMAN Isoform 2 of UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A;sp|P54725-3|RD23A_HUMAN Isoform 3 of UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A;sp|P54725|RD23A_HUMAN UV exc 1 78.3416 0.00247138 108.31 79.356 78.342 1 84.687 0.0148328 84.687 1 108.313 0.00247138 108.31 1 78.3416 0.0191541 78.342 1 82.0687 0.00931166 82.069 1 68.8302 0.0223861 68.83 1 79.6139 0.0108739 79.614 1 61.1674 0.0342527 61.167 1 M PIRDYRIDEKNFVVVMVTKTKAGQGTSAPPE X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX NFVVVM(1)VTKTK NFVVVM(78.34)VTKTK 6 3 0.74046 24377000 24377000 0 0 12.076 0 1941300 0 0 0 3370000 3166800 3387100 3806100 NaN NaN NaN NaN NaN 1.6695 NaN NaN NaN 0 0 0 1941300 0 0 0 0 0 0 0 0 0 0 0 3370000 0 0 3166800 0 0 3387100 0 0 3806100 0 0 601 963 75 75 2076;3062 2372;3500 6895;6896;6897;6898;6899;9876;9877;9878 7259;7260;7261;7262;7263;10406;10407;10408 9878 10408 20190821_JH_WT_Ubi 5945 9877 10407 20190821_JH_MUT_Ubi 5515 9877 10407 20190821_JH_MUT_Ubi 5515 sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN 111;111;111 sp|P54725-2|RD23A_HUMAN sp|P54725-2|RD23A_HUMAN sp|P54725-2|RD23A_HUMAN Isoform 2 of UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A;sp|P54725-3|RD23A_HUMAN Isoform 3 of UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A;sp|P54725|RD23A_HUMAN UV exc 1 49.5054 2.38763E-05 57.488 37.037 49.505 1 49.5054 0.000230318 49.505 1 49.5054 0.000230318 49.505 1 57.4882 2.38763E-05 57.488 1 M APESSTSFPPAPTSGMSHPPPAAREDKSPSE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX TKAGQGTSAPPEASPTAAPESSTSFPPAPTSGM(1)SHPPPAAR TKAGQGTSAPPEASPTAAPESSTSFPPAPTSGM(49.51)SHPPPAAR 33 4 0.17551 11923000 11923000 0 0 NaN 0 0 4135000 0 4058800 0 3729200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4135000 0 0 0 0 0 4058800 0 0 0 0 0 3729200 0 0 0 0 0 0 0 0 602 963 111 111 4442 5038 14094;14095;14096 14797;14798;14799 14096 14799 20190821_JH_WT_Ubi 6293 14095 14798 20190902_JH_MUT_Ubi_3 6746 14095 14798 20190902_JH_MUT_Ubi_3 6746 sp|P54727|RD23B_HUMAN 73 sp|P54727|RD23B_HUMAN sp|P54727|RD23B_HUMAN sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens OX=9606 GN=RAD23B PE=1 SV=1 1 93.0956 0.000299018 136.5 90.902 93.096 1 88.1008 0.00579868 88.101 1 136.5 0.000299018 136.5 1 93.0956 0.00925278 93.096 1 82.0687 0.00931166 82.069 1 68.8302 0.0223861 68.83 1 79.6139 0.0108739 79.614 1 61.1674 0.0342527 61.167 1 M ALKEYKIDEKNFVVVMVTKPKAVSTPAPATT X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX NFVVVM(1)VTKPK NFVVVM(93.1)VTKPK 6 3 0.44685 18796000 18796000 0 0 6.5161 0 1941300 0 0 0 3370000 3166800 3387100 3806100 NaN NaN NaN NaN NaN 1.1683 NaN NaN NaN 0 0 0 1941300 0 0 0 0 0 0 0 0 0 0 0 3370000 0 0 3166800 0 0 3387100 0 0 3806100 0 0 603 964 73 73 2076;3061 2372;3498 6895;6896;6897;6898;6899;9873;9874 7259;7260;7261;7262;7263;10403;10404 9874 10404 20190902_JH_EV_Ubi_3 6904 9873 10403 20190902_JH_EV_Ubi_2 6943 9873 10403 20190902_JH_EV_Ubi_2 6943 sp|P55008-2|AIF1_HUMAN;sp|P55008|AIF1_HUMAN 69;123 sp|P55008-2|AIF1_HUMAN sp|P55008-2|AIF1_HUMAN sp|P55008-2|AIF1_HUMAN Isoform 2 of Allograft inflammatory factor 1 OS=Homo sapiens OX=9606 GN=AIF1;sp|P55008|AIF1_HUMAN Allograft inflammatory factor 1 OS=Homo sapiens OX=9606 GN=AIF1 PE=1 SV=1 0.999999 65.976 0.0241669 67.519 12.995 67.519 0.999998 58.8017 0.0341145 61.235 0.999999 65.976 0.0241669 67.519 1 M RMMLGKRSAILKMILMYEEKAREKEKPTGPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPXXXXXXXXXXX SAILKMILM(1)YEEK SAILKM(-65.98)ILM(65.98)YEEK 9 3 2.2416 5382500 5382500 0 0 NaN 0 0 0 0 0 0 0 2216100 3166400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2216100 0 0 3166400 0 0 604 968 69 69 3823 4343 12103;12104 12693;12694 12104 12694 20190902_JH_WT_Ubi_3 14758 12104 12694 20190902_JH_WT_Ubi_3 14758 12104 12694 20190902_JH_WT_Ubi_3 14758 sp|P55010|IF5_HUMAN 324 sp|P55010|IF5_HUMAN sp|P55010|IF5_HUMAN sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 OS=Homo sapiens OX=9606 GN=EIF5 PE=1 SV=2 1 42.1488 0.00375415 65.085 37.936 42.149 1 40.7592 0.0364408 40.759 1 65.0849 0.00375415 65.085 1 48.5467 0.016763 48.547 1 42.1488 0.0271667 42.149 1 M KAQRYLLHGLECVVAMHQAQLISKIPHILKE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPXXXXXXX YLLHGLECVVAM(1)HQAQLISK YLLHGLECVVAM(42.15)HQAQLISK 12 4 0.80076 16010000 16010000 0 0 0.89433 0 1770400 7388000 0 0 0 0 0 0 NaN 0.4774 0.58711 NaN NaN 0 NaN NaN NaN 0 0 0 1770400 0 0 7388000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605 969 324 324 5169 5878 16658;16659;16660;16661 17510;17511;17512;17513 16661 17513 20190902_JH_WT_Ubi_3 11205 16660 17512 20190821_JH_WT_Ubi 9677 16660 17512 20190821_JH_WT_Ubi 9677 sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN 1087;1071 sp|P55011|S12A2_HUMAN sp|P55011|S12A2_HUMAN sp|P55011|S12A2_HUMAN Solute carrier family 12 member 2 OS=Homo sapiens OX=9606 GN=SLC12A2 PE=1 SV=1;sp|P55011-3|S12A2_HUMAN Isoform 2 of Solute carrier family 12 member 2 OS=Homo sapiens OX=9606 GN=SLC12A2 1 147.505 7.34898E-14 153.41 116.23 147.51 1 74.9664 0.00376258 74.966 1 153.414 7.34898E-14 153.41 1 98.6761 0.000442309 98.676 1 147.505 1.49992E-13 147.51 1 M MATLLSKFRIDFSDIMVLGDINTKPKKENII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPXXXXX IDFSDIM(1)VLGDINTKPK IDFSDIM(147.51)VLGDINTKPK 7 3 0.48565 14183000 14183000 0 0 2.063 2166200 2989400 0 0 0 5403900 3623200 0 0 NaN 0.99986 NaN NaN NaN 2.1408 2.6629 NaN NaN 2166200 0 0 2989400 0 0 0 0 0 0 0 0 0 0 0 5403900 0 0 3623200 0 0 0 0 0 0 0 0 606 970 1087 1087 2080 2377 6905;6906;6907;6908 7269;7270;7271;7272 6908 7272 20190902_JH_MUT_Ubi_3 11801 6906 7270 20190821_JH_MUT_Ubi 11508 6906 7270 20190821_JH_MUT_Ubi 11508 sp|P55036|PSMD4_HUMAN 263 sp|P55036|PSMD4_HUMAN sp|P55036|PSMD4_HUMAN sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PSMD4 PE=1 SV=1 1 103.847 2.34431E-25 130.53 105.91 103.85 1 48.2908 0.00155017 48.291 1 44.3102 3.379E-18 116.65 1 130.525 2.34431E-25 130.53 1 78.2742 5.16473E-07 78.274 1 51.2344 0.000606733 51.234 1 88.7208 4.40891E-09 88.721 1 81.4056 1.91024E-07 81.406 1 61.1768 3.55083E-07 81.105 1 103.847 7.4582E-13 103.85 1 M IATTGTEDSDDALLKMTISQQEFGRTGLPDL X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX AAAASAAEAGIATTGTEDSDDALLKM(1)TISQQEFGR AAAASAAEAGIATTGTEDSDDALLKM(103.85)TISQQEFGR 26 3 -1.21 46129000 46129000 0 0 1.3571 0 3031700 5751000 981770 1285800 2530600 0 2540800 2479200 0 0.62618 0.42394 NaN NaN 1.3204 0 NaN 0.92611 0 0 0 3031700 0 0 5751000 0 0 981770 0 0 1285800 0 0 2530600 0 0 0 0 0 2540800 0 0 2479200 0 0 607 971 263 263 3 3 9;10;11;12;13;14;15;16;17;18;19;20;21 10;11;12;13;14;15;16;17;18;19;20;21;22;23;24 21 23 20190902_JH_WT_Ubi_3 12425 17 19 20190821_JH_WT_Ubi 11124 17 19 20190821_JH_WT_Ubi 11124 sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN 319;341 sp|P55084-2|ECHB_HUMAN sp|P55084-2|ECHB_HUMAN sp|P55084-2|ECHB_HUMAN Isoform 2 of Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=HADHB;sp|P55084|ECHB_HUMAN Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=HADHB PE=1 SV=3 1 63.8162 0.0275936 63.816 38.997 63.816 1 63.8162 0.0275936 63.816 M ALAMGYKPKAYLRDFMYVSQDPKDQLLLGPT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPXXXXXXXX DFM(1)YVSQDPK DFM(63.82)YVSQDPK 3 2 1.1226 3473900 3473900 0 0 NaN 0 0 3473900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3473900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608 975 319 319 464 539 1471 1564 1471 1564 20190821_JH_WT_Ubi 6608 1471 1564 20190821_JH_WT_Ubi 6608 1471 1564 20190821_JH_WT_Ubi 6608 sp|P55209|NP1L1_HUMAN;sp|P55209-2|NP1L1_HUMAN;sp|P55209-3|NP1L1_HUMAN 184;184;116 sp|P55209|NP1L1_HUMAN sp|P55209|NP1L1_HUMAN sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens OX=9606 GN=NAP1L1 PE=1 SV=1;sp|P55209-2|NP1L1_HUMAN Isoform 2 of Nucleosome assembly protein 1-like 1 OS=Homo sapiens OX=9606 GN=NAP1L1;sp|P55209-3|NP1L1_HUMAN Isoform 3 of Nucleoso 1 45.4378 0.0289982 46.249 16.115 45.438 1 46.2485 0.0289982 46.249 1 43.0241 0.0353468 43.024 1 45.4378 0.0305946 45.438 1 M EFWLTVFKNVDLLSDMVQEHDEPILKHLKDI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPXXXXX NVDLLSDM(1)VQEHDEPILK NVDLLSDM(45.44)VQEHDEPILK 8 3 1.0775 14717000 14717000 0 0 2.5863 2084300 0 6852900 0 0 0 0 5779800 0 NaN NaN NaN NaN NaN NaN NaN 2.0482 0 2084300 0 0 0 0 0 6852900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5779800 0 0 0 0 0 609 980 184 184 3238 3698 10402;10403;10404 10946;10947;10948 10404 10948 20190902_JH_WT_Ubi_2 11478 10402 10946 20190821_JH_EV_Ubi 9688 10402 10946 20190821_JH_EV_Ubi 9688 sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN 120;83 sp|P60174|TPIS_HUMAN sp|P60174|TPIS_HUMAN sp|P60174|TPIS_HUMAN Triosephosphate isomerase OS=Homo sapiens OX=9606 GN=TPI1 PE=1 SV=3;sp|P60174-1|TPIS_HUMAN Isoform 2 of Triosephosphate isomerase OS=Homo sapiens OX=9606 GN=TPI1 1 101.452 7.96965E-20 144.33 108.34 101.45 1 144.329 7.96965E-20 144.33 1 136.955 2.90505E-19 136.96 1 101.452 0.0003114 101.45 1 M YKVTNGAFTGEISPGMIKDCGATWVVLGHSE X;GlyGly (K);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX VTNGAFTGEISPGM(1)IK VTNGAFTGEISPGM(101.45)IK 14 2 -0.27761 15387000 15387000 0 0 NaN 0 0 3195700 0 0 0 0 2198600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3195700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2198600 0 0 0 0 0 610 997 120 120 2069;5031 2365;5713 6870;6871;16228 7233;7234;17059 16228 17059 20190902_JH_WT_Ubi_3 10305 6870 7233 20190821_JH_WT_Ubi 9421 6870 7233 20190821_JH_WT_Ubi 9421 sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN 73;73 sp|P60660|MYL6_HUMAN sp|P60660|MYL6_HUMAN sp|P60660|MYL6_HUMAN Myosin light polypeptide 6 OS=Homo sapiens OX=9606 GN=MYL6 PE=1 SV=2;sp|P60660-2|MYL6_HUMAN Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens OX=9606 GN=MYL6 1 60.6574 3.32752E-08 133.48 58.804 60.657 1 133.482 3.32752E-08 133.48 1 124.163 2.14166E-07 124.16 1 125.217 1.93698E-07 125.22 1 116.576 2.32449E-05 116.58 1 55.3353 8.07137E-06 120.92 1 60.6574 8.07137E-06 120.92 1 M DEMNVKVLDFEHFLPMLQTVAKNKDQGTYED X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPXXXXXXXXX VLDFEHFLPM(1)LQTVAK VLDFEHFLPM(60.66)LQTVAK 10 3 0.90488 90418000 90418000 0 0 2.0961 0 11085000 29069000 0 0 11520000 6284000 12739000 16406000 NaN 0.77492 1.1723 NaN NaN NaN 1.5578 NaN NaN 0 0 0 11085000 0 0 29069000 0 0 0 0 0 0 0 0 11520000 0 0 6284000 0 0 12739000 0 0 16406000 0 0 611 999 73 73 4887 5547;5549 15701;15702;15703;15704;15705;15706;15711;15712 16502;16503;16504;16505;16506;16507;16512;16513 15712 16513 20190902_JH_WT_Ubi_3 14877 15701 16502 20190821_JH_MUT_Ubi 13210 15701 16502 20190821_JH_MUT_Ubi 13210 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 269;269 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 41.2218 0.000176885 71.071 50.8 41.222 1 55.0512 0.0016457 55.051 1 43.6843 0.0117377 43.684 1 51.8114 0.002595 51.811 1 48.2042 0.00740588 48.204 1 41.2218 0.000176885 71.071 2 M RFRCPEALFQPSFLGMESCGIHETTFNSIMK X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP CPEALFQPSFLGM(1)ESCGIHETTFNSIM(1)K CPEALFQPSFLGM(41.22)ESCGIHETTFNSIM(41.22)K 13 3 -1.4011 94774000 0 94774000 0 18.798 0 596360 13635000 0 0 0 0 0 4347600 NaN NaN 2.7045 NaN NaN NaN NaN NaN NaN 0 0 0 0 596360 0 0 13635000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4347600 0 612 1000;1087 269;269 269 356 419;420;421;422 1186;1187;1188;1191;1192;1193 1273;1274;1275;1278;1279;1280 1193 1280 20190902_JH_WT_Ubi_3 13975 1188 1275 20190902_JH_WT_Ubi_3 13190 1188 1275 20190902_JH_WT_Ubi_3 13190 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 283;283 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 41.2218 0.000176885 71.071 50.8 41.222 1 55.0512 0.0016457 55.051 1 43.6843 0.00309817 50.803 0.984038 18.7305 0.0184066 47.546 1 51.8114 0.002595 51.811 1 48.2042 0.00740588 48.204 1 41.2218 0.000176885 71.071 1;2 M GMESCGIHETTFNSIMKCDVDIRKDLYANTV X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Deamidation (NQ);X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX CPEALFQPSFLGM(1)ESCGIHETTFNSIM(1)K CPEALFQPSFLGM(41.22)ESCGIHETTFNSIM(41.22)K 27 3 -1.4011 124530000 29759000 94774000 0 24.701 0 596360 13635000 0 0 2591100 0 0 22247000 NaN NaN 2.7045 NaN NaN NaN NaN NaN NaN 0 0 0 0 596360 0 0 13635000 0 0 0 0 0 0 0 2591100 0 0 0 0 0 0 0 0 17899000 4347600 0 613 1000;1087 283;283 283 356 419;420;421;422 1186;1187;1188;1189;1190;1191;1192;1193;1194 1273;1274;1275;1276;1277;1278;1279;1280;1281 1193 1280 20190902_JH_WT_Ubi_3 13975 1188 1275 20190902_JH_WT_Ubi_3 13190 1188 1275 20190902_JH_WT_Ubi_3 13190 sp|P60709|ACTB_HUMAN 16 sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1 1 146.787 1.27943E-14 146.79 113.38 146.79 1 146.787 1.27943E-14 146.79 M MDDDIAALVVDNGSGMCKAGFAGDDAPRAVF X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX DDDIAALVVDNGSGM(1)CK DDDIAALVVDNGSGM(146.79)CK 15 2 -0.52553 20750000 20750000 0 0 49.897 0 0 0 0 0 0 0 0 20750000 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20750000 0 0 614 1000 16 16 410 483 1336 1426 1336 1426 20190902_JH_WT_Ubi_3 15376 1336 1426 20190902_JH_WT_Ubi_3 15376 1336 1426 20190902_JH_WT_Ubi_3 15376 sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN 190;148;190;192;192;191;192;191 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|Q562R1|ACTBL_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63267-2|ACTH_HUMAN Isoform 2 of Actin, gamma-enteric smooth muscle OS=Homo sapiens OX=9606 GN=ACTG2;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN 1 122.344 3.44599E-08 152.38 99.242 122.34 1 113.24 0.000622734 113.24 1 127.559 0.000119848 127.56 1 152.378 3.44599E-08 152.38 1 128.363 0.000108174 128.36 1 132.862 4.28403E-05 132.86 1 122.344 0.000220043 122.34 1 M ILRLDLAGRDLTDYLMKILTERGYNFTTTAE;ILRLDLAGRDLTDYLMKILTERGYSFTTTAE;IMRLDLAGRDLTDYLMKILTERGYSFVTTAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPXXXXXXXXX DLTDYLM(1)KILTER DLTDYLM(122.34)KILTER 7 3 -0.71731 29176000 29176000 0 0 4.0533 0 2697600 11718000 0 0 2964500 1648900 3903900 6242700 NaN 1.7454 2.0731 NaN NaN NaN NaN NaN NaN 0 0 0 2697600 0 0 11718000 0 0 0 0 0 0 0 0 2964500 0 0 1648900 0 0 3903900 0 0 6242700 0 0 615 1000;1087;1094;1420 190;190;192;191 190 603 689 1882;1883;1884;1885;1886;1887 1992;1993;1994;1995;1996;1997;1998 1887 1998 20190902_JH_WT_Ubi_3 15534 1883 1993 20190902_JH_MUT_Ubi_2 14998 1883 1993 20190902_JH_MUT_Ubi_2 14998 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 305;305 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 149.666 9.18404E-81 227.36 182.82 149.67 1 61.537 6.07586E-68 214.42 1 223.436 1.92873E-80 223.44 1 183.054 9.18404E-81 227.36 1 41.6481 1.24688E-36 178.1 1 135.536 1.0937E-68 218.14 1 198.103 4.40352E-56 198.1 1 171.293 1.95282E-36 171.29 1 151.205 1.92873E-80 223.44 1 149.666 1.22239E-56 205.36 1 M RKDLYANTVLSGGTTMYPGIADRMQKEITAL X;GlyGly (K);X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX KDLYANTVLSGGTTM(1)YPGIADR KDLYANTVLSGGTTM(149.67)YPGIADR 15 3 0.20874 668170000 668170000 0 0 6.3793 34610000 35366000 115870000 27811000 29378000 64229000 0 168320000 113930000 8.145 4.6888 3.3127 20.961 27.667 6.455 0 8.9148 5.4139 34610000 0 0 35366000 0 0 115870000 0 0 27811000 0 0 29378000 0 0 64229000 0 0 0 0 0 168320000 0 0 113930000 0 0 616 1000;1087 305;305 305 608;2325 695;698;2644 1907;1908;1909;1910;1911;1912;1913;1914;1915;1926;7640;7641;7642;7643;7644;7645;7646;7647 2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2044;8037;8038;8039;8040;8041;8042;8043;8044 7647 8044 20190902_JH_WT_Ubi_3 10655 1912 2029 20190821_JH_WT_Ubi 12271 1912 2029 20190821_JH_WT_Ubi 12271 sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN 325;283;325;327;327;326;327 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63267-2|ACTH_HUMAN Isoform 2 of Actin, gamma-enteric smooth muscle OS=Homo sapiens OX=9606 GN=ACTG2;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN 1 78.692 0.00316615 98.407 53.865 78.692 1 91.9612 0.00481262 91.961 1 98.4072 0.00316615 98.407 1 72.34 0.0176191 75.378 1 66.5375 0.0255 66.538 1 71.0845 0.0193243 71.085 1 74.6109 0.0145348 74.611 1 78.692 0.0114605 78.692 1 90.1082 0.0346519 90.108 1 M ADRMQKEITALAPSTMKIKIIAPPERKYSVW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPXXXXXXXXXXXX EITALAPSTM(1)KIK EITALAPSTM(78.69)KIK 10 3 0.39713 667480000 667480000 0 0 6.6846 18765000 22009000 0 21755000 19982000 38091000 33795000 48680000 0 4.6991 1.9014 0 NaN 6.3396 2.5282 1.7423 3.0342 0 18765000 0 0 22009000 0 0 0 0 0 21755000 0 0 19982000 0 0 38091000 0 0 33795000 0 0 48680000 0 0 0 0 0 617 1000;1087;1094 325;325;327 325 949;950 1071;1072 2978;2979;2980;2981;2982;2983;2984;2985;2986 3132;3133;3134;3135;3136;3137;3138;3139;3140 2986 3140 20190902_JH_WT_Ubi_2 7855 2983 3137 20190821_JH_MUT_Ubi 5406 2983 3137 20190821_JH_MUT_Ubi 5406 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN 227;227;927 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1;sp|Q6S8J3|POTEE_HUMAN POTE ankyrin domain family member E OS=Homo sapiens OX=9606 GN=PO 1 47.6029 5.41813E-34 167.61 133.14 47.603 1 58.0148 8.85458E-30 166.35 1 69.27 2.24675E-29 159.1 1 93.0059 3.86437E-22 147.08 1 154.79 1.48523E-22 154.79 1 154.79 1.48523E-22 154.79 1 167.614 6.48083E-30 167.61 1 166.692 8.21303E-30 166.69 1 158.374 2.47227E-23 158.37 1 47.6029 5.41813E-34 165.34 1 M IKEKLCYVALDFEQEMATAASSSSLEKSYEL X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPXXXX LCYVALDFEQEM(1)ATAASSSSLEK LCYVALDFEQEM(47.6)ATAASSSSLEK 12 3 1.7449 447010000 447010000 0 0 2.1821 30140000 20705000 119100000 16397000 10515000 20418000 20396000 73596000 93019000 2.4128 0.94956 1.2701 NaN 7.7773 2.7102 2.5808 3.1873 2.5201 30140000 0 0 20705000 0 0 119100000 0 0 16397000 0 0 10515000 0 0 20418000 0 0 20396000 0 0 73596000 0 0 93019000 0 0 618 1000;1087;1490 227;227;927 227 962;2524 1085;2865;2867 3050;3051;3052;3053;3054;3055;3056;3057;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8211 3204;3205;3206;3207;3208;3209;3210;3211;3212;8609;8610;8611;8612;8613;8614;8615;8616;8617;8618;8619;8620;8621;8622;8633 8211 8633 20190902_JH_WT_Ubi_3 13306 8196 8617 20190902_JH_MUT_Ubi_2 12913 3057 3212 20190902_JH_WT_Ubi_3 12103 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN 44;44;46;46;45;46 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1;sp|P68133|ACTS_HUMAN Actin, alpha skeletal muscle OS=Homo sapiens OX=9606 GN=ACTA1 PE=1 1 61.3037 1.31076E-08 142.98 95.113 61.304 1 142.982 7.64396E-05 142.98 1 110.977 2.59835E-08 110.98 1 88.9447 6.74759E-06 120.45 1 62.6167 0.00178306 62.617 1 81.3335 0.000730459 121.83 1 52.4981 0.000868552 118.03 1 45.6595 1.31076E-08 111.57 1 112.295 0.000995187 112.3 1 61.3037 1.56177E-07 122.96 1;2 M AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;Deamidation (NQ);GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP HQGVM(1)VGM(1)GQKDSYVGDEAQSKR HQGVM(61.3)VGM(61.3)GQKDSYVGDEAQSKR 5 4 0.1049 532200000 138250000 393950000 0 10.078 9324800 9465200 60413000 1194900 2943900 40533000 47174000 67942000 237330000 NaN NaN 3.5592 NaN NaN NaN NaN 3.3661 15.162 1323500 8001300 0 0 9465200 0 22012000 38401000 0 0 1194900 0 2943900 0 0 8753200 31780000 0 8329300 38845000 0 48452000 19490000 0 43204000 194120000 0 619 1000;1087;1094 44;44;46 44 1976;1977;1978 2248;2249;2251;2252;2253;2254 6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6440;6442;6445;6447;6449;6451;6453;6457;6458;6459;6460;6461;6462;6463;6465;6466 6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6778;6781;6783;6785;6787;6789;6793;6794;6795;6796;6797;6798;6799;6801;6802 6466 6802 20190902_JH_WT_Ubi_3 5446 6423 6759 20190821_JH_EV_Ubi 2238 6460 6796 20190902_JH_MUT_Ubi_3 4727 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN 47;47;49;49;48;49 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1;sp|P68133|ACTS_HUMAN Actin, alpha skeletal muscle OS=Homo sapiens OX=9606 GN=ACTA1 PE=1 1 61.3037 1.31076E-08 142.98 95.113 61.304 1 142.982 7.64396E-05 142.98 1 110.977 2.59835E-08 110.98 1 88.9447 6.74759E-06 123.75 1 62.6167 0.00106215 112.71 1 52.4981 0.00106215 112.71 1 45.6595 1.31076E-08 111.57 1 112.295 0.000370925 131.52 1 61.3037 1.56177E-07 108.71 1;2 M PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;Deamidation (NQ);GlyGly (K);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP HQGVM(1)VGM(1)GQKDSYVGDEAQSKR HQGVM(61.3)VGM(61.3)GQKDSYVGDEAQSKR 8 4 0.1049 502890000 108950000 393950000 0 9.5226 8001300 12501000 51389000 3238600 0 38341000 42075000 68726000 220420000 NaN NaN 3.0276 NaN NaN NaN NaN 3.4049 14.082 0 8001300 0 3035500 9465200 0 12988000 38401000 0 2043700 1194900 0 0 0 0 6561300 31780000 0 3229600 38845000 0 49236000 19490000 0 26296000 194120000 0 620 1000;1087;1094 47;47;49 47 1976;1977;1978 2248;2249;2251;2252;2253;2254 6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6441;6443;6444;6446;6448;6450;6452;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466 6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6777;6779;6780;6782;6784;6786;6788;6793;6794;6795;6796;6797;6798;6799;6800;6801;6802 6466 6802 20190902_JH_WT_Ubi_3 5446 6423 6759 20190821_JH_EV_Ubi 2238 6460 6796 20190902_JH_MUT_Ubi_3 4727 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 119;119 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 55.8193 0.00069542 55.819 6.4498 55.819 1 55.8193 0.00069542 55.819 3 M LLTEAPLNPKANREKMTQIMFETFNTPAMYV X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)TQIM(1)FETFNTPAM(1)YVAIQAVLSLYASGR M(55.82)TQIM(55.82)FETFNTPAM(55.82)YVAIQAVLSLYASGR 1 3 -1.3796 811740 0 0 811740 NaN 0 0 0 0 0 0 0 811740 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 811740 0 0 0 621 1000;1087 119;119 119 2974 3393 9597 10101 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 123;123 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 55.8193 0.00069542 55.819 6.4498 55.819 1 55.8193 0.00069542 55.819 3 M APLNPKANREKMTQIMFETFNTPAMYVAIQA X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP M(1)TQIM(1)FETFNTPAM(1)YVAIQAVLSLYASGR M(55.82)TQIM(55.82)FETFNTPAM(55.82)YVAIQAVLSLYASGR 5 3 -1.3796 811740 0 0 811740 NaN 0 0 0 0 0 0 0 811740 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 811740 0 0 0 622 1000;1087 123;123 123 2974 3393 9597 10101 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 132;132 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 55.8193 0.00069542 55.819 6.4498 55.819 1 55.8193 0.00069542 55.819 3 M EKMTQIMFETFNTPAMYVAIQAVLSLYASGR X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP M(1)TQIM(1)FETFNTPAM(1)YVAIQAVLSLYASGR M(55.82)TQIM(55.82)FETFNTPAM(55.82)YVAIQAVLSLYASGR 14 3 -1.3796 811740 0 0 811740 NaN 0 0 0 0 0 0 0 811740 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 811740 0 0 0 623 1000;1087 132;132 132 2974 3393 9597 10101 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 9597 10101 20190902_JH_WT_Ubi_2 16759 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN 153;153 sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN sp|P60709|ACTB_HUMAN sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 OS=Homo sapiens OX=9606 GN=ACTB PE=1 SV=1;sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 82.8308 4.62775E-11 103.74 74.146 82.831 1 97.3456 4.87959E-08 97.346 1 72.946 6.34908E-05 72.946 1 44.1098 2.48386E-06 86.508 1 62.7225 0.000262012 62.722 1 76.1333 2.58345E-05 76.133 1 67.3676 0.000149054 67.368 1 103.737 4.62775E-11 103.74 1 66.5564 0.000161497 66.556 1 82.8308 1.0452E-05 82.831 1 M AVLSLYASGRTTGIVMDSGDGVTHTVPIYEG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP TTGIVM(1)DSGDGVTHTVPIYEGYALPHAILR TTGIVM(82.83)DSGDGVTHTVPIYEGYALPHAILR 6 4 -0.40817 922440000 922440000 0 0 1.6 12471000 39378000 293430000 5518500 7012400 51953000 40800000 197900000 259290000 2.7137 0.92041 0.96675 3.7783 NaN 2.5479 1.742 2.4756 2.5821 12471000 0 0 39378000 0 0 293430000 0 0 5518500 0 0 7012400 0 0 51953000 0 0 40800000 0 0 197900000 0 0 259290000 0 0 624 1000;1087 153;153 153 4626 5250 14780;14781;14782;14783;14784;14785;14786;14787;14788;14789 15531;15532;15533;15534;15535;15536;15537;15538;15539;15540 14789 15540 20190902_JH_WT_Ubi_3 12391 14785 15536 20190902_JH_MUT_Ubi_3 11172 14785 15536 20190902_JH_MUT_Ubi_3 11172 sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN 302;302 sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 PE=1 SV=1;sp|P60842-2|IF4A1_HUMAN Isoform 2 of Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 1 50.8431 0.0063142 75.819 45.614 50.843 1 56.4815 0.0127388 56.482 1 63.0372 0.0074992 63.037 1 48.704 0.0201738 48.704 1 49.3096 0.019408 49.31 1 60.4007 0.00960638 60.401 1 62.2875 0.00809837 62.287 1 49.9341 0.0331834 49.934 1 50.8431 0.0063142 75.819 2 M WLTEKMHARDFTVSAMHGDMDQKERDVIMRE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX DFTVSAM(1)HGDM(1)DQKER DFTVSAM(50.84)HGDM(50.84)DQKER 7 3 0.509 18078000 0 18078000 0 NaN 936060 524850 0 1734800 1070600 1491100 1049900 0 1983000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 936060 0 0 524850 0 0 0 0 0 1734800 0 0 1070600 0 0 1491100 0 0 1049900 0 0 0 0 0 1983000 0 625 1001 302 302 471;472 547;548 1492;1493;1494;1495;1496;1497;1498;1499;1500 1585;1586;1587;1588;1589;1590;1591;1592;1593 1500 1593 20190902_JH_WT_Ubi_3 5559 1493 1586 20190902_JH_WT_Ubi_3 6177 1493 1586 20190902_JH_WT_Ubi_3 6177 sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN 306;306 sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 PE=1 SV=1;sp|P60842-2|IF4A1_HUMAN Isoform 2 of Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 1 50.8431 0.0063142 75.819 45.614 50.843 1 56.4815 0.0127388 56.482 1 63.0372 0.0074992 63.037 1 48.704 0.0201738 48.704 1 49.3096 0.019408 49.31 1 60.4007 0.00960638 60.401 1 62.2875 0.00809837 62.287 1 49.9341 0.0331834 49.934 1 50.8431 0.0063142 75.819 2 M KMHARDFTVSAMHGDMDQKERDVIMREFRSG X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX DFTVSAM(1)HGDM(1)DQKER DFTVSAM(50.84)HGDM(50.84)DQKER 11 3 0.509 18078000 0 18078000 0 NaN 936060 524850 0 1734800 1070600 1491100 1049900 0 1983000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 936060 0 0 524850 0 0 0 0 0 1734800 0 0 1070600 0 0 1491100 0 0 1049900 0 0 0 0 0 1983000 0 626 1001 306 306 471;472 547;548 1492;1493;1494;1495;1496;1497;1498;1499;1500 1585;1586;1587;1588;1589;1590;1591;1592;1593 1500 1593 20190902_JH_WT_Ubi_3 5559 1493 1586 20190902_JH_WT_Ubi_3 6177 1493 1586 20190902_JH_WT_Ubi_3 6177 sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN 216;216 sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 PE=1 SV=1;sp|P60842-2|IF4A1_HUMAN Isoform 2 of Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 1 77.2866 0.000261596 77.287 43.926 77.287 1 77.2866 0.000261596 77.287 1 M QKLNSNTQVVLLSATMPSDVLEVTKKFMRDP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPXXXXXX LNSNTQVVLLSATM(1)PSDVLEVTK LNSNTQVVLLSATM(77.29)PSDVLEVTK 14 3 -0.93994 794020 794020 0 0 0.33907 0 0 0 0 0 794020 0 0 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 794020 0 0 0 0 0 0 0 0 0 0 0 627 1001 216 216 2737 3110 8879 9339 8879 9339 20190902_JH_MUT_Ubi_2 13723 8879 9339 20190902_JH_MUT_Ubi_2 13723 8879 9339 20190902_JH_MUT_Ubi_2 13723 sp|P60903|S10AA_HUMAN 35 sp|P60903|S10AA_HUMAN sp|P60903|S10AA_HUMAN sp|P60903|S10AA_HUMAN Protein S100-A10 OS=Homo sapiens OX=9606 GN=S100A10 PE=1 SV=2 1 90.2292 3.24852E-08 145.49 99.175 90.229 1 112.624 0.000138265 112.62 1 145.493 3.24852E-08 145.49 1 125.468 1.56748E-05 125.47 1 90.2292 0.00231664 90.229 1 M AGDKGYLTKEDLRVLMEKEFPGFLENQKDPL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPXXX VLM(1)EKEFPGFLENQK VLM(90.23)EKEFPGFLENQK 3 3 3.0264 49279000 49279000 0 0 1.053 9530700 10556000 0 0 0 14723000 0 14469000 0 3.3642 1.2704 0 0 0 2.1855 0 4.1678 0 9530700 0 0 10556000 0 0 0 0 0 0 0 0 0 0 0 14723000 0 0 0 0 0 14469000 0 0 0 0 0 628 1004 35 35 4913 5577 15787;15788;15789;15790 16591;16592;16593;16594 15790 16594 20190902_JH_WT_Ubi_2 10655 15788 16592 20190821_JH_MUT_Ubi 8352 15788 16592 20190821_JH_MUT_Ubi 8352 sp|P61158|ARP3_HUMAN 372 sp|P61158|ARP3_HUMAN sp|P61158|ARP3_HUMAN sp|P61158|ARP3_HUMAN Actin-related protein 3 OS=Homo sapiens OX=9606 GN=ACTR3 PE=1 SV=3 1 59.1551 0.00638258 78.964 36.175 59.155 1 48.6592 0.0344879 48.659 1 66.5375 0.0144193 66.538 1 51.6115 0.0304074 51.612 1 59.1551 0.0216932 59.155 1 78.964 0.00638258 78.964 1 59.1551 0.0216932 59.155 1 M RLKPKPIDVQVITHHMQRYAVWFGGSMLAST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXPPPPPPPPPPPPPXXXXXXXXXXXXX PIDVQVITHHM(1)QR PIDVQVITHHM(59.16)QR 11 4 0.21626 75071000 75071000 0 0 4.1145 0 1997100 15711000 0 0 5466000 5530100 25281000 21086000 NaN NaN 2.1389 NaN NaN NaN NaN 2.3193 NaN 0 0 0 1997100 0 0 15711000 0 0 0 0 0 0 0 0 5466000 0 0 5530100 0 0 25281000 0 0 21086000 0 0 629 1015 372 372 3384 3864 10828;10829;10830;10831;10832;10833 11392;11393;11394;11395;11396;11397 10833 11397 20190902_JH_WT_Ubi_3 6715 10832 11396 20190902_JH_WT_Ubi_2 7015 10832 11396 20190902_JH_WT_Ubi_2 7015 sp|P61158|ARP3_HUMAN 383 sp|P61158|ARP3_HUMAN sp|P61158|ARP3_HUMAN sp|P61158|ARP3_HUMAN Actin-related protein 3 OS=Homo sapiens OX=9606 GN=ACTR3 PE=1 SV=3 1 49.7684 0.0123558 49.768 32.838 49.768 1 49.7684 0.0123558 49.768 1 M ITHHMQRYAVWFGGSMLASTPEFYQVCHTKK X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX YAVWFGGSM(1)LASTPEFYQVCHTK YAVWFGGSM(49.77)LASTPEFYQVCHTK 9 3 0.19118 1554500 1554500 0 0 NaN 0 0 0 0 0 0 0 1554500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1554500 0 0 0 0 0 630 1015 383 383 5107 5807 16472 17312 16472 17312 20190902_JH_WT_Ubi_2 13634 16472 17312 20190902_JH_WT_Ubi_2 13634 16472 17312 20190902_JH_WT_Ubi_2 13634 sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN 309;314 sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 PE=1 SV=1;sp|P61160-2|ARP2_HUMAN Isoform 2 of Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 1 119.557 9.78128E-08 125.97 87.786 119.56 1 125.975 9.78128E-08 125.97 1 95.0671 0.000483026 95.067 1 107.496 0.000104626 107.5 1 124.095 1.17758E-07 124.09 1 112.5 2.19727E-05 112.5 1 119.557 7.52147E-06 119.56 1 M RSEFYKHIVLSGGSTMYPGLPSRLERELKQL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPXXXXXXXX HIVLSGGSTM(1)YPGLPSR HIVLSGGSTM(119.56)YPGLPSR 10 3 0.128 174520000 174520000 0 0 4.1749 0 7054400 27711000 0 0 11228000 15213000 58499000 54816000 NaN 1.9378 2.1356 NaN NaN 3.2371 4.5471 6.9093 5.5337 0 0 0 7054400 0 0 27711000 0 0 0 0 0 0 0 0 11228000 0 0 15213000 0 0 58499000 0 0 54816000 0 0 631 1016 309 309 1885 2142 6086;6087;6088;6089;6090;6091 6407;6408;6409;6410;6411;6412 6091 6412 20190902_JH_WT_Ubi_3 9049 6086 6407 20190821_JH_MUT_Ubi 7164 6086 6407 20190821_JH_MUT_Ubi 7164 sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN 353;358 sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 PE=1 SV=1;sp|P61160-2|ARP2_HUMAN Isoform 2 of Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 1 86.803 0.00185721 86.803 54.741 86.803 1 79.6386 0.00360563 79.639 1 56.5691 0.0208088 56.569 1 72.6812 0.00645416 72.681 1 67.5004 0.0127358 71.806 1 86.803 0.00185721 86.803 1;2 M SKFKIRIEDPPRRKHMVFLGGAVLADIMKDK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX HM(1)VFLGGAVLADIM(1)K HM(86.8)VFLGGAVLADIM(86.8)K 2 3 1.0678 9203400 0 9203400 0 5.4427 0 0 3937900 0 0 1025800 1203600 0 3036200 NaN NaN 2.3288 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3937900 0 0 0 0 0 0 0 0 1025800 0 0 1203600 0 0 0 0 0 3036200 0 632 1016 353 353 1952 2219;2220 6339;6340;6341;6342;6344 6670;6671;6672;6673;6675 6342 6673 20190902_JH_WT_Ubi_3 11552 6342 6673 20190902_JH_WT_Ubi_3 11552 6342 6673 20190902_JH_WT_Ubi_3 11552 sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN 365;370 sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 PE=1 SV=1;sp|P61160-2|ARP2_HUMAN Isoform 2 of Actin-related protein 2 OS=Homo sapiens OX=9606 GN=ACTR2 1 86.803 0.00160562 90.412 50.299 86.803 1 79.6386 0.00160562 90.412 1 56.5691 0.0208088 56.569 1 72.6812 0.00645416 72.681 1 86.803 0.00185721 86.803 1;2 M RKHMVFLGGAVLADIMKDKDNFWMTRQEYQE X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPXXXXXXXXXXXXXX HM(1)VFLGGAVLADIM(1)K HM(86.8)VFLGGAVLADIM(86.8)K 14 3 1.0678 11370000 2166200 9203400 0 6.7237 0 0 6104100 0 0 1025800 1203600 0 3036200 NaN NaN 3.6098 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2166200 3937900 0 0 0 0 0 0 0 0 1025800 0 0 1203600 0 0 0 0 0 3036200 0 633 1016 365 365 1952 2219;2220 6339;6340;6341;6342;6343 6670;6671;6672;6673;6674 6342 6673 20190902_JH_WT_Ubi_3 11552 6343 6674 20190821_JH_WT_Ubi 11514 6343 6674 20190821_JH_WT_Ubi 11514 sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P61204-2|ARF3_HUMAN 134;134;97 sp|P84077|ARF1_HUMAN sp|P84077|ARF1_HUMAN sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1 OS=Homo sapiens OX=9606 GN=ARF1 PE=1 SV=2;sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3 OS=Homo sapiens OX=9606 GN=ARF3 PE=1 SV=2;sp|P61204-2|ARF3_HUMAN Isoform 2 of ADP-ribosylation factor 3 OS=Homo sapiens 1 106.229 6.0451E-10 106.23 80.305 106.23 1 64.3177 0.00174935 64.318 1 106.229 6.0451E-10 106.23 1 M AVLLVFANKQDLPNAMNAAEITDKLGLHSLR X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX DAVLLVFANKQDLPNAM(1)NAAEITDK DAVLLVFANKQDLPNAM(106.23)NAAEITDK 17 3 -1.1086 14436000 14436000 0 0 2.5906 0 0 11246000 0 0 0 0 0 3190700 NaN NaN 2.018 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 11246000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3190700 0 0 634 1018 134 134 397 467 1294;1295 1381;1382 1295 1382 20190902_JH_WT_Ubi_3 13402 1295 1382 20190902_JH_WT_Ubi_3 13402 1295 1382 20190902_JH_WT_Ubi_3 13402 sp|P61225|RAP2B_HUMAN 143 sp|P61225|RAP2B_HUMAN sp|P61225|RAP2B_HUMAN sp|P61225|RAP2B_HUMAN Ras-related protein Rap-2b OS=Homo sapiens OX=9606 GN=RAP2B PE=1 SV=1 1 97.5699 7.41915E-07 97.57 51.962 97.57 1 97.5699 7.41915E-07 97.57 1 M YGEGKALAEEWSCPFMETSAKNKASVDELFA X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX EVSYGEGKALAEEWSCPFM(1)ETSAK EVSYGEGKALAEEWSCPFM(97.57)ETSAK 19 3 1.5957 2445900 2445900 0 0 NaN 0 0 2445900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2445900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 635 1020 143 143 1145 1292 3658 3852 3658 3852 20190821_JH_WT_Ubi 10833 3658 3852 20190821_JH_WT_Ubi 10833 3658 3852 20190821_JH_WT_Ubi 10833 sp|P61619|S61A1_HUMAN;sp|Q9H9S3-2|S61A2_HUMAN;sp|Q9H9S3-3|S61A2_HUMAN;sp|Q9H9S3|S61A2_HUMAN 77;77;55;77 sp|P61619|S61A1_HUMAN sp|P61619|S61A1_HUMAN sp|P61619|S61A1_HUMAN Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens OX=9606 GN=SEC61A1 PE=1 SV=2;sp|Q9H9S3-2|S61A2_HUMAN Isoform 2 of Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens OX=9606 GN=SEC61A2;sp|Q9 1 124.757 2.64056E-15 124.76 104.5 124.76 1 124.757 2.64056E-15 124.76 2 M FYWMRVILASNRGTLMELGISPIVTSGLIMQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP GTLM(1)ELGISPIVTSGLIM(1)QLLAGAK GTLM(124.76)ELGISPIVTSGLIM(124.76)QLLAGAK 4 3 -2.636 2571000 0 2571000 0 NaN 0 0 2571000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2571000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 636 1027 77 77 1722 1961 5492 5780;5781 5492 5780 20190821_JH_WT_Ubi 16295 5492 5780 20190821_JH_WT_Ubi 16295 5492 5780 20190821_JH_WT_Ubi 16295 sp|P61619|S61A1_HUMAN;sp|Q9H9S3-2|S61A2_HUMAN;sp|Q9H9S3-3|S61A2_HUMAN;sp|Q9H9S3|S61A2_HUMAN 91;91;69;91 sp|P61619|S61A1_HUMAN sp|P61619|S61A1_HUMAN sp|P61619|S61A1_HUMAN Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens OX=9606 GN=SEC61A1 PE=1 SV=2;sp|Q9H9S3-2|S61A2_HUMAN Isoform 2 of Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens OX=9606 GN=SEC61A2;sp|Q9 1 124.757 2.64056E-15 124.76 104.5 124.76 1 124.757 2.64056E-15 124.76 2 M LMELGISPIVTSGLIMQLLAGAKIIEVGDTP X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX GTLM(1)ELGISPIVTSGLIM(1)QLLAGAK GTLM(124.76)ELGISPIVTSGLIM(124.76)QLLAGAK 18 3 -2.636 2571000 0 2571000 0 NaN 0 0 2571000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 2571000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 637 1027 91 91 1722 1961 5492 5780;5781 5492 5780 20190821_JH_WT_Ubi 16295 5492 5780 20190821_JH_WT_Ubi 16295 5492 5780 20190821_JH_WT_Ubi 16295 sp|P61916-2|NPC2_HUMAN;sp|P61916|NPC2_HUMAN 79;79 sp|P61916-2|NPC2_HUMAN sp|P61916-2|NPC2_HUMAN sp|P61916-2|NPC2_HUMAN Isoform 2 of NPC intracellular cholesterol transporter 2 OS=Homo sapiens OX=9606 GN=NPC2;sp|P61916|NPC2_HUMAN NPC intracellular cholesterol transporter 2 OS=Homo sapiens OX=9606 GN=NPC2 PE=1 SV=1 1 82.7654 4.36158E-06 92.474 63.824 82.765 1 92.4736 4.36158E-06 92.474 1 62.5558 0.00260404 62.556 1 56.5397 0.0133406 56.54 1 74.7755 0.00229867 74.776 1 71.8718 0.00083551 71.872 1 56.7083 0.00615784 56.708 1 82.7654 0.000121703 82.765 1 M NIQSKSSKAVVHGILMGVPVPFPIPEPDGCK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP AVVHGILM(1)GVPVPFPIPEPDGCK AVVHGILM(82.77)GVPVPFPIPEPDGCK 8 3 -0.00070664 14116000 14116000 0 0 4.4826 2731800 0 4757700 590520 0 0 828060 2398800 2809300 NaN NaN 1.8276 NaN NaN 0 NaN NaN NaN 2731800 0 0 0 0 0 4757700 0 0 590520 0 0 0 0 0 0 0 0 828060 0 0 2398800 0 0 2809300 0 0 638 1030 79 79 332 391 1113;1114;1115;1116;1117;1118;1119 1200;1201;1202;1203;1204;1205;1206 1119 1206 20190902_JH_WT_Ubi_3 14323 1113 1200 20190821_JH_EV_Ubi 13456 1113 1200 20190821_JH_EV_Ubi 13456 sp|P61970|NTF2_HUMAN 84 sp|P61970|NTF2_HUMAN sp|P61970|NTF2_HUMAN sp|P61970|NTF2_HUMAN Nuclear transport factor 2 OS=Homo sapiens OX=9606 GN=NUTF2 PE=1 SV=1 1 69.5253 0.000318427 69.525 40.542 69.525 1 69.5253 0.000318427 69.525 1 M TAQDHQPTPDSCIISMVVGQLKADEDPIMGF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX IQHSITAQDHQPTPDSCIISM(1)VVGQLK IQHSITAQDHQPTPDSCIISM(69.53)VVGQLK 21 4 0.15609 3503000 3503000 0 0 NaN 0 0 0 0 0 0 0 0 3503000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3503000 0 0 639 1032 84 84 2241 2551 7356 7735 7356 7735 20190902_JH_WT_Ubi_3 11553 7356 7735 20190902_JH_WT_Ubi_3 11553 7356 7735 20190902_JH_WT_Ubi_3 11553 sp|P62195|PRS8_HUMAN 9 sp|P62195|PRS8_HUMAN sp|P62195|PRS8_HUMAN sp|P62195|PRS8_HUMAN 26S proteasome regulatory subunit 8 OS=Homo sapiens OX=9606 GN=PSMC5 PE=1 SV=1 1 46.5141 0.0285832 46.514 21.56 46.514 1 46.5141 0.0285832 46.514 M _______MALDGPEQMELEEGKAGSGLRQYY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPXXX ALDGPEQM(1)ELEEGKAGSGLR ALDGPEQM(46.51)ELEEGKAGSGLR 8 3 0.096609 827490 827490 0 0 NaN 0 0 0 0 827490 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 827490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 640 1039 9 9 196 224 659 725 659 725 20190902_JH_EV_Ubi_3 9303 659 725 20190902_JH_EV_Ubi_3 9303 659 725 20190902_JH_EV_Ubi_3 9303 sp|P62244|RS15A_HUMAN 111 sp|P62244|RS15A_HUMAN sp|P62244|RS15A_HUMAN sp|P62244|RS15A_HUMAN 40S ribosomal protein S15a OS=Homo sapiens OX=9606 GN=RPS15A PE=1 SV=2 1 49.3953 7.40679E-05 94.61 66.137 49.395 1 48.4769 0.0208993 48.477 1 84.8945 0.000262304 84.895 1 94.6096 7.40679E-05 94.61 1 49.3953 0.01905 49.395 1 M SRQFGFIVLTTSAGIMDHEEARRKHTGGKIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX QFGFIVLTTSAGIM(1)DHEEAR QFGFIVLTTSAGIM(49.4)DHEEAR 14 3 1.5472 16077000 16077000 0 0 NaN 1676200 2236100 10514000 0 0 0 0 0 1651100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1676200 0 0 2236100 0 0 10514000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1651100 0 0 641 1041 111 111 3626 4135 11637;11638;11639;11640 12214;12215;12216;12217 11640 12217 20190902_JH_WT_Ubi_3 12694 11639 12216 20190821_JH_WT_Ubi 11579 11639 12216 20190821_JH_WT_Ubi 11579 sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN 138;160 sp|P62258-2|1433E_HUMAN sp|P62258-2|1433E_HUMAN sp|P62258-2|1433E_HUMAN Isoform SV of 14-3-3 protein epsilon OS=Homo sapiens OX=9606 GN=YWHAE;sp|P62258|1433E_HUMAN 14-3-3 protein epsilon OS=Homo sapiens OX=9606 GN=YWHAE PE=1 SV=1 1 48.3512 0.020772 52.522 11.431 48.351 1 52.5225 0.020772 52.522 1 48.3512 0.0278598 48.351 1 M AENSLVAYKAASDIAMTELPPTHPIRLGLAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPXXXXX AASDIAM(1)TELPPTHPIR AASDIAM(48.35)TELPPTHPIR 7 3 -0.60581 10527000 10527000 0 0 NaN 0 0 4150800 0 0 0 0 0 6375900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4150800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6375900 0 0 642 1043 138 138 39 45 141;142 156;157 142 157 20190902_JH_WT_Ubi_3 8671 141 156 20190821_JH_WT_Ubi 6925 141 156 20190821_JH_WT_Ubi 6925 sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN 213;235 sp|P62258-2|1433E_HUMAN sp|P62258-2|1433E_HUMAN sp|P62258-2|1433E_HUMAN Isoform SV of 14-3-3 protein epsilon OS=Homo sapiens OX=9606 GN=YWHAE;sp|P62258|1433E_HUMAN 14-3-3 protein epsilon OS=Homo sapiens OX=9606 GN=YWHAE PE=1 SV=1 1 55.3936 1.52512E-115 237.71 199.33 55.394 1 116.999 3.71435E-16 117 1 237.713 1.52512E-115 237.71 1 190.607 4.69053E-61 190.61 1 169.875 1.23396E-40 169.88 1 68.8348 0.000223798 68.835 1 73.5185 2.61402E-49 173.25 1 55.3936 7.0493E-40 164.27 1 77.6457 3.95444E-05 77.646 1 M IMQLLRDNLTLWTSDMQGDGEEQNKEALQDV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;GlyGly (K);X;X;X;Deamidation (NQ);X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP DNLTLWTSDM(1)QGDGEEQNKEALQDVEDENQ DNLTLWTSDM(55.39)QGDGEEQNKEALQDVEDENQ 10 3 0.85002 32956000 32956000 0 0 2.7124 3688400 7339800 5284800 1284500 1310100 6076600 3754100 0 2213300 NaN 1.3627 1.157 NaN NaN NaN 1.7094 NaN NaN 3688400 0 0 7339800 0 0 5284800 0 0 1284500 0 0 1310100 0 0 6076600 0 0 3754100 0 0 0 0 0 2213300 0 0 643 1043 213 213 636 729;731 1999;2000;2001;2002;2003;2004;2005;2006;2010;2011 2119;2120;2121;2122;2123;2124;2125;2126;2127;2128;2129;2130;2134;2135 2011 2135 20190902_JH_MUT_Ubi_3 12187 2002 2124 20190821_JH_MUT_Ubi 11759 2002 2124 20190821_JH_MUT_Ubi 11759 sp|P62263|RS14_HUMAN 75 sp|P62263|RS14_HUMAN sp|P62263|RS14_HUMAN sp|P62263|RS14_HUMAN 40S ribosomal protein S14 OS=Homo sapiens OX=9606 GN=RPS14 PE=1 SV=3 1 69.2591 0.00100598 80.016 49.598 69.259 1 63.9365 0.0103103 63.936 1 80.0158 0.00100598 80.016 1 69.2591 0.00623436 69.259 1 M MKVKADRDESSPYAAMLAAQDVAQRCKELGI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPXXXXXX ADRDESSPYAAM(1)LAAQDVAQR ADRDESSPYAAM(69.26)LAAQDVAQR 12 3 -0.1641 12838000 12838000 0 0 NaN 0 0 3081200 0 0 0 0 5677600 4079100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3081200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5677600 0 0 4079100 0 0 644 1044 75 75 68 79 246;247;248 264;265;266 248 266 20190902_JH_WT_Ubi_3 9008 247 265 20190902_JH_WT_Ubi_2 9432 247 265 20190902_JH_WT_Ubi_2 9432 sp|P62280|RS11_HUMAN 109 sp|P62280|RS11_HUMAN sp|P62280|RS11_HUMAN sp|P62280|RS11_HUMAN 40S ribosomal protein S11 OS=Homo sapiens OX=9606 GN=RPS11 PE=1 SV=3 1 89.9003 0.00794713 89.9 54.748 89.9 1 60.167 0.0320865 60.167 1 62.1662 0.0287879 62.166 1 89.9003 0.00794713 89.9 1 M HYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX NM(1)SVHLSPCFR NM(89.9)SVHLSPCFR 2 3 -0.82847 15751000 15751000 0 0 3.9044 0 785190 0 0 0 0 0 7978200 6987800 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 785190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7978200 0 0 6987800 0 0 645 1047 109 109 3164 3616 10184;10185;10186 10723;10724;10725 10186 10725 20190902_JH_WT_Ubi_3 7187 10186 10725 20190902_JH_WT_Ubi_3 7187 10186 10725 20190902_JH_WT_Ubi_3 7187 sp|P62314|SMD1_HUMAN 36 sp|P62314|SMD1_HUMAN sp|P62314|SMD1_HUMAN sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1 1 132.517 6.11057E-36 173.19 115.22 132.52 1 173.189 6.11057E-36 173.19 1 145.878 3.12323E-16 145.88 1 132.517 2.50441E-11 132.52 1 M NGTQVHGTITGVDVSMNTHLKAVKMTLKNRE Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX NGTQVHGTITGVDVSM(1)NTHLK NGTQVHGTITGVDVSM(132.52)NTHLK 16 3 -0.66688 26805000 26805000 0 0 4.0459 2435600 0 0 3288500 2116900 0 0 0 0 0.64055 0 NaN NaN NaN 0 NaN NaN NaN 2435600 0 0 0 0 0 0 0 0 3288500 0 0 2116900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 646 1048 36 36 3077 3521;3522 9940;9941;9942;9943;9944;9945 10471;10472;10473;10474;10475;10476 9945 10476 20190902_JH_EV_Ubi_3 6864 9943 10474 20190821_JH_EV_Ubi 6497 9943 10474 20190821_JH_EV_Ubi 6497 sp|P62328|TYB4_HUMAN 7 sp|P62328|TYB4_HUMAN sp|P62328|TYB4_HUMAN sp|P62328|TYB4_HUMAN Thymosin beta-4 OS=Homo sapiens OX=9606 GN=TMSB4X PE=1 SV=2 1 95.7746 0.0203335 95.775 22.846 95.775 1 95.7746 0.0203335 95.775 M _________MSDKPDMAEIEKFDKSKLKKTE X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPXXXXXXXXXX SDKPDM(1)AEIEK SDKPDM(95.77)AEIEK 6 2 1.0719 822820 822820 0 0 NaN 0 822820 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 822820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647 1050 7 7 3854 4377 12215 12810 12215 12810 20190821_JH_MUT_Ubi 4103 12215 12810 20190821_JH_MUT_Ubi 4103 12215 12810 20190821_JH_MUT_Ubi 4103 sp|P62333|PRS10_HUMAN 122 sp|P62333|PRS10_HUMAN sp|P62333|PRS10_HUMAN sp|P62333|PRS10_HUMAN 26S proteasome regulatory subunit 10B OS=Homo sapiens OX=9606 GN=PSMC6 PE=1 SV=1 1 50.9863 0.0167374 50.986 18.024 50.986 1 50.9863 0.0167374 50.986 1 M IMRYLPREVDPLVYNMSHEDPGNVSYSEIGG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP EVDPLVYNM(1)SHEDPGNVSYSEIGGLSEQIR EVDPLVYNM(50.99)SHEDPGNVSYSEIGGLSEQIR 9 3 -0.24023 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648 1052 122 122 1129 1271 3585 3770 3585 3770 20190821_JH_WT_Ubi 11591 3585 3770 20190821_JH_WT_Ubi 11591 3585 3770 20190821_JH_WT_Ubi 11591 sp|P62805|H4_HUMAN 85 sp|P62805|H4_HUMAN sp|P62805|H4_HUMAN sp|P62805|H4_HUMAN Histone H4 OS=Homo sapiens OX=9606 GN=HIST1H4A PE=1 SV=2 1 68.6258 0.0151949 68.626 26.277 68.626 1 68.6258 0.0151949 68.626 M AVTYTEHAKRKTVTAMDVVYALKRQGRTLYG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX TVTAM(1)DVVYALK TVTAM(68.63)DVVYALK 5 2 2.2455 2098600 2098600 0 0 0.13972 0 2098600 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN 0 NaN 0 0 0 2098600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 649 1057 85 85 4681 5311 15001 15761 15001 15761 20190821_JH_MUT_Ubi 9252 15001 15761 20190821_JH_MUT_Ubi 9252 15001 15761 20190821_JH_MUT_Ubi 9252 sp|P62820|RAB1A_HUMAN;sp|P62820-3|RAB1A_HUMAN;sp|P62820-2|RAB1A_HUMAN 176;100;112 sp|P62820|RAB1A_HUMAN sp|P62820|RAB1A_HUMAN sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens OX=9606 GN=RAB1A PE=1 SV=3;sp|P62820-3|RAB1A_HUMAN Isoform 3 of Ras-related protein Rab-1A OS=Homo sapiens OX=9606 GN=RAB1A;sp|P62820-2|RAB1A_HUMAN Isoform 2 of Ras-related protein Rab-1A OS= 1 117.479 1.73256E-13 152.11 96.654 117.48 1 152.107 1.73256E-13 152.11 1 101.723 0.00051146 101.72 1 83.8231 0.0027345 83.823 1 117.479 2.86921E-05 117.48 1 M VEQSFMTMAAEIKKRMGPGATAGGAEKSNVK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;GlyGly (K) XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)GPGATAGGAEKSNVK M(117.48)GPGATAGGAEKSNVK 1 3 1.1565 16435000 16435000 0 0 NaN 0 2138700 0 3746100 0 0 2803900 7746800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2138700 0 0 0 0 0 3746100 0 0 0 0 0 0 0 0 2803900 0 0 7746800 0 0 0 0 0 650 1058 176 176 2917 3314 9400;9401;9402;9403 9894;9895;9896;9897 9403 9897 20190902_JH_WT_Ubi_2 4133 9401 9895 20190821_JH_MUT_Ubi 2588 9401 9895 20190821_JH_MUT_Ubi 2588 sp|P62829|RL23_HUMAN 112 sp|P62829|RL23_HUMAN sp|P62829|RL23_HUMAN sp|P62829|RL23_HUMAN 60S ribosomal protein L23 OS=Homo sapiens OX=9606 GN=RPL23 PE=1 SV=1 1 77.7756 0.000200406 115.34 71.043 77.776 1 85.4573 0.00460749 85.457 1 115.342 0.000200406 115.34 1 77.7756 0.00871474 77.776 1 M YFEDNAGVIVNNKGEMKGSAITGPVAKECAD X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);GlyGly (K);X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPXXXX GEM(1)KGSAITGPVAK GEM(77.78)KGSAITGPVAK 3 3 -0.034192 7588800 7588800 0 0 NaN 0 0 0 2576400 2387300 0 2625100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2576400 0 0 2387300 0 0 0 0 0 2625100 0 0 0 0 0 0 0 0 651 1060 112 112 1436 1634 4557;4558;4559 4789;4790;4791 4559 4791 20190902_JH_MUT_Ubi_3 4343 4558 4790 20190902_JH_EV_Ubi_3 4245 4558 4790 20190902_JH_EV_Ubi_3 4245 sp|P62834|RAP1A_HUMAN 67 sp|P62834|RAP1A_HUMAN sp|P62834|RAP1A_HUMAN sp|P62834|RAP1A_HUMAN Ras-related protein Rap-1A OS=Homo sapiens OX=9606 GN=RAP1A PE=1 SV=1 0.999953 43.2574 0.0141656 45.395 27.098 45.395 0.999953 43.2574 0.0141656 45.395 1 M MLEILDTAGTEQFTAMRDLYMKNGQGFALVY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX QVEVDCQQCMLEILDTAGTEQFTAM(1)R QVEVDCQQCM(-43.26)LEILDTAGTEQFTAM(43.26)R 25 3 1.6074 7259100 7259100 0 0 NaN 0 0 7259100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7259100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 652 1061 67 67 3715 4229 11802 12383 11802 12383 20190821_JH_WT_Ubi 7982 11802 12383 20190821_JH_WT_Ubi 7982 11802 12383 20190821_JH_WT_Ubi 7982 sp|P62841|RS15_HUMAN 111 sp|P62841|RS15_HUMAN sp|P62841|RS15_HUMAN sp|P62841|RS15_HUMAN 40S ribosomal protein S15 OS=Homo sapiens OX=9606 GN=RPS15 PE=1 SV=2 1 42.8061 0.00588176 51.044 26.366 42.806 1 51.0443 0.00588176 51.044 1 42.8061 0.0167759 42.806 1 M VYNGKTFNQVEIKPEMIGHYLGEFSITYKPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPXX TFNQVEIKPEM(1)IGHYLGEFSITYK TFNQVEIKPEM(42.81)IGHYLGEFSITYK 11 4 -0.02534 8586300 8586300 0 0 NaN 0 0 6333000 0 0 0 0 2253300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6333000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2253300 0 0 0 0 0 653 1062 111 111 4345 4928 13741;13742 14414;14415 13742 14415 20190902_JH_WT_Ubi_2 13653 13741 14414 20190821_JH_WT_Ubi 12156 13741 14414 20190821_JH_WT_Ubi 12156 sp|P62873-2|GBB1_HUMAN;sp|P62873|GBB1_HUMAN 262;262 sp|P62873-2|GBB1_HUMAN sp|P62873-2|GBB1_HUMAN sp|P62873-2|GBB1_HUMAN Isoform 2 of Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens OX=9606 GN=GNB1;sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens OX=9606 GN=GNB1 PE=1 1 88.7093 7.81372E-07 88.709 58.241 88.709 1 53.262 0.00250911 53.262 1 82.5167 3.35732E-05 82.517 1 66.7719 0.000430714 66.772 1 88.7093 7.81372E-07 88.709 1 M DATCRLFDLRADQELMTYSHDNIICGITSVS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP ADQELM(1)TYSHDNIICGITSVSFSKSGR ADQELM(88.71)TYSHDNIICGITSVSFSKSGR 6 4 0.46667 18556000 18556000 0 0 NaN 0 1632300 8834000 0 0 0 0 4024500 4065100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1632300 0 0 8834000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4024500 0 0 4065100 0 0 654 1066 262 262 65 76 239;240;241;242 257;258;259;260 242 260 20190902_JH_WT_Ubi_3 11308 242 260 20190902_JH_WT_Ubi_3 11308 242 260 20190902_JH_WT_Ubi_3 11308 sp|P62917|RL8_HUMAN 107 sp|P62917|RL8_HUMAN sp|P62917|RL8_HUMAN sp|P62917|RL8_HUMAN 60S ribosomal protein L8 OS=Homo sapiens OX=9606 GN=RPL8 PE=1 SV=2 1 81.3123 7.19339E-05 81.312 49.395 81.312 1 58.0535 0.00267456 58.054 1 81.3123 7.19339E-05 81.312 1 M KKAQLNIGNVLPVGTMPEGTIVCCLEEKPGD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPXXX AQLNIGNVLPVGTM(1)PEGTIVCCLEEK AQLNIGNVLPVGTM(81.31)PEGTIVCCLEEK 14 3 1.2618 3207000 3207000 0 0 0.83412 0 0 0 0 0 0 0 1425500 1781600 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1425500 0 0 1781600 0 0 655 1071 107 107 256 303 887;888 964;965 888 965 20190902_JH_WT_Ubi_3 14746 888 965 20190902_JH_WT_Ubi_3 14746 888 965 20190902_JH_WT_Ubi_3 14746 sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN 100;40 sp|P62937|PPIA_HUMAN sp|P62937|PPIA_HUMAN sp|P62937|PPIA_HUMAN Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens OX=9606 GN=PPIA PE=1 SV=2;sp|P62937-2|PPIA_HUMAN Isoform 2 of Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens OX=9606 GN=PPIA 1 104.551 3.64178E-53 186.54 145.73 104.55 1 159.464 5.9652E-34 159.46 1 186.541 3.64178E-53 186.54 1 58.3324 0.0086897 58.332 1 124.846 2.19992E-15 124.85 1 50.1395 7.40658E-44 178.55 1 148.722 3.1152E-34 165.01 1 104.551 7.45391E-16 131.65 1 M DENFILKHTGPGILSMANAGPNTNGSQFFIC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;Deamidation (NQ);X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP HTGPGILSM(1)ANAGPNTNGSQFFICTAK HTGPGILSM(104.55)ANAGPNTNGSQFFICTAK 9 3 2.1961 210760000 210760000 0 0 4.644 0 3938300 33211000 0 0 4991800 3472000 117910000 26575000 NaN NaN 1.5211 NaN NaN 1.9039 1.209 11.893 3.2643 0 0 0 3938300 0 0 33211000 0 0 0 0 0 0 0 0 4991800 0 0 3472000 0 0 117910000 0 0 26575000 0 0 656 1072 100 100 2009 2289;2290;2292 6588;6589;6590;6591;6592;6593;6594;6595;6596;6602;6603;6604 6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6946;6947;6948;6949 6604 6949 20190902_JH_WT_Ubi_3 12044 6594 6937 20190821_JH_WT_Ubi 9959 6594 6937 20190821_JH_WT_Ubi 9959 sp|P62937|PPIA_HUMAN 1 sp|P62937|PPIA_HUMAN sp|P62937|PPIA_HUMAN sp|P62937|PPIA_HUMAN Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens OX=9606 GN=PPIA PE=1 SV=2 1 70.5552 0.00198564 70.615 38.968 70.555 1 70.6153 0.00198564 70.615 1 66.7019 0.0029808 66.702 1 70.5552 0.00200092 70.555 1 M _______________MVNPTVFFDIAVDGEP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VNPTVFFDIAVDGEPLGR M(70.56)VNPTVFFDIAVDGEPLGR 1 3 -1.3928 2954100 2954100 0 0 NaN 0 0 0 0 1374400 873700 0 0 706080 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1374400 0 0 873700 0 0 0 0 0 0 0 0 706080 0 0 657 1072 1 1 2982 3403 9627;9628;9629 10134;10135;10136;10137 9629 10136 20190902_JH_WT_Ubi_3 16543 9627 10134 20190902_JH_EV_Ubi_3 13921 9627 10134 20190902_JH_EV_Ubi_3 13921 sp|P62942|FKB1A_HUMAN 30 sp|P62942|FKB1A_HUMAN sp|P62942|FKB1A_HUMAN sp|P62942|FKB1A_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens OX=9606 GN=FKBP1A PE=1 SV=2 1 54.811 0.000568144 100.04 63.272 54.811 1 56.2501 0.0355601 56.25 1 54.811 0.000568144 100.04 1 M TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPXXXXXXXXX RGQTCVVHYTGM(1)LEDGKK RGQTCVVHYTGM(54.81)LEDGKK 12 4 -0.74726 19691000 19691000 0 0 NaN 0 0 4151900 0 0 0 0 0 8895000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4151900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8895000 0 0 658 1073 30 30 3751;3752 4265;4266 11900;11901;11902 12482;12483;12484 11902 12484 20190902_JH_WT_Ubi_3 5547 11901 12483 20190902_JH_WT_Ubi_3 6134 11901 12483 20190902_JH_WT_Ubi_3 6134 sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN 1;1;1;1 sp|P62979|RS27A_HUMAN sp|P62979|RS27A_HUMAN sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens OX=9606 GN=RPS27A PE=1 SV=2;sp|P62987|RL40_HUMAN Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens OX=9606 GN=UBA52 PE=1 SV=2;sp|P0CG47|UBB_HUMAN Polyubiquitin-B OS=Homo sapiens O 1 46.878 7.4407E-05 144.55 80.429 46.878 1 115.004 0.00139768 115 1 54.5213 0.00015363 141.71 1 46.878 0.00167526 110.93 1 133.912 0.000402335 133.91 1 144.55 7.4407E-05 144.55 1 109.721 0.00204325 109.72 1 77.5932 0.0196638 77.593 1 M _______________MQIFVKTLTGKTITLE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QIFVKTLTGKTITLEVEPSDTIENVK M(46.88)QIFVKTLTGKTITLEVEPSDTIENVK 1 4 -0.67402 80942000 80942000 0 0 2.2601 2707300 6108800 8389100 0 0 16581000 12084000 11479000 9837800 1.1757 0.69125 1.8118 0 0 1.462 NaN 1.8612 NaN 2707300 0 0 6108800 0 0 8389100 0 0 0 0 0 0 0 0 16581000 0 0 12084000 0 0 11479000 0 0 9837800 0 0 659 1074 1 1 2958;2959 3365;3367 9525;9526;9527;9528;9529;9530;9531;9538;9539 10025;10026;10027;10028;10029;10030;10031;10038;10039 9539 10039 20190821_JH_WT_Ubi 11318 9528 10028 20190902_JH_MUT_Ubi_3 6945 9528 10028 20190902_JH_MUT_Ubi_3 6945 sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN 164;145 sp|P63000-2|RAC1_HUMAN sp|P63000-2|RAC1_HUMAN sp|P63000-2|RAC1_HUMAN Isoform B of Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens OX=9606 GN=RAC1;sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens OX=9606 GN=RAC1 PE=1 SV=1 1 85.1664 6.73606E-08 115.38 90.592 85.166 1 115.385 6.73606E-08 115.38 1 98.7267 7.43183E-06 98.727 1 97.0796 1.43461E-05 97.08 1 85.1664 0.00033084 85.166 1 M KEKKLTPITYPQGLAMAKEIGAVKYLECSAL X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPXXXXXXX KLTPITYPQGLAM(1)AKEIGAVK KLTPITYPQGLAM(85.17)AKEIGAVK 13 3 0.58819 15790000 15790000 0 0 5.2943 0 2247400 0 0 0 3642000 1650500 0 1082000 NaN 1.3415 0 NaN NaN NaN NaN NaN NaN 0 0 0 2247400 0 0 0 0 0 0 0 0 0 0 0 3642000 0 0 1650500 0 0 0 0 0 1082000 0 0 660 1075 164 164 2394;2395 2722;2723 7845;7846;7847;7848;7849;7850 8248;8249;8250;8251;8252;8253 7850 8253 20190902_JH_WT_Ubi_3 9973 7847 8250 20190821_JH_MUT_Ubi 8120 7847 8250 20190821_JH_MUT_Ubi 8120 sp|P63104|1433Z_HUMAN 22 sp|P63104|1433Z_HUMAN sp|P63104|1433Z_HUMAN sp|P63104|1433Z_HUMAN 14-3-3 protein zeta/delta OS=Homo sapiens OX=9606 GN=YWHAZ PE=1 SV=1 1 40.9944 0.0191685 40.994 18.871 40.994 1 40.9944 0.0191685 40.994 2 M VQKAKLAEQAERYDDMAACMKSVTEQGAELS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP YDDM(1)AACM(1)KSVTEQGAELSNEER YDDM(40.99)AACM(40.99)KSVTEQGAELSNEER 4 3 0.44234 1389900 0 1389900 0 NaN 0 0 0 0 0 0 0 0 1389900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1389900 0 661 1078 22 22 5111 5811 16484 17325 16484 17325 20190902_JH_WT_Ubi_3 7563 16484 17325 20190902_JH_WT_Ubi_3 7563 16484 17325 20190902_JH_WT_Ubi_3 7563 sp|P63104|1433Z_HUMAN 26 sp|P63104|1433Z_HUMAN sp|P63104|1433Z_HUMAN sp|P63104|1433Z_HUMAN 14-3-3 protein zeta/delta OS=Homo sapiens OX=9606 GN=YWHAZ PE=1 SV=1 1 40.9944 0.0191685 40.994 18.871 40.994 1 40.9944 0.0191685 40.994 2 M KLAEQAERYDDMAACMKSVTEQGAELSNEER X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP YDDM(1)AACM(1)KSVTEQGAELSNEER YDDM(40.99)AACM(40.99)KSVTEQGAELSNEER 8 3 0.44234 1389900 0 1389900 0 NaN 0 0 0 0 0 0 0 0 1389900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1389900 0 662 1078 26 26 5111 5811 16484 17325 16484 17325 20190902_JH_WT_Ubi_3 7563 16484 17325 20190902_JH_WT_Ubi_3 7563 16484 17325 20190902_JH_WT_Ubi_3 7563 sp|P63167|DYL1_HUMAN 13 sp|P63167|DYL1_HUMAN sp|P63167|DYL1_HUMAN sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1 1 109.37 8.67128E-06 109.37 82.315 109.37 1 89.8161 8.67128E-06 89.816 1 109.37 9.86646E-06 109.37 2 M ___MCDRKAVIKNADMSEEMQQDSVECATQA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP NADM(1)SEEM(1)QQDSVECATQALEK NADM(109.37)SEEM(109.37)QQDSVECATQALEK 4 3 0.59052 1830600 0 1830600 0 NaN 0 0 0 0 0 0 0 1830600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1830600 0 0 0 0 663 1080 13 13 2992 3419 9683;9684 10197;10198 9684 10198 20190902_JH_WT_Ubi_3 9612 9684 10198 20190902_JH_WT_Ubi_3 9612 9683 10197 20190902_JH_WT_Ubi_2 10075 sp|P63167|DYL1_HUMAN 17 sp|P63167|DYL1_HUMAN sp|P63167|DYL1_HUMAN sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1 1 109.37 8.67128E-06 109.37 82.315 109.37 1 89.8161 8.67128E-06 89.816 1 109.37 9.86646E-06 109.37 2 M CDRKAVIKNADMSEEMQQDSVECATQALEKY X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX NADM(1)SEEM(1)QQDSVECATQALEK NADM(109.37)SEEM(109.37)QQDSVECATQALEK 8 3 0.59052 1830600 0 1830600 0 NaN 0 0 0 0 0 0 0 1830600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1830600 0 0 0 0 664 1080 17 17 2992 3419 9683;9684 10197;10198 9684 10198 20190902_JH_WT_Ubi_3 9612 9684 10198 20190902_JH_WT_Ubi_3 9612 9683 10197 20190902_JH_WT_Ubi_2 10075 sp|P63208|SKP1_HUMAN;sp|P63208-2|SKP1_HUMAN 30;30 sp|P63208|SKP1_HUMAN sp|P63208|SKP1_HUMAN sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 PE=1 SV=2;sp|P63208-2|SKP1_HUMAN Isoform 2 of S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 1 64.377 4.23444E-09 112.37 70.679 64.377 1 58.3324 0.0129225 58.332 1 112.368 4.23444E-09 112.37 1 64.377 0.000179936 64.377 2 M EVDVEIAKQSVTIKTMLEDLGMDDEGDDDPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP TM(1)LEDLGM(1)DDEGDDDPVPLPNVNAAILKK TM(64.38)LEDLGM(64.38)DDEGDDDPVPLPNVNAAILKK 2 3 -2.0095 2111400 0 2111400 0 NaN 0 0 0 0 0 912460 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 912460 0 0 0 0 0 0 0 0 0 0 665 1082 30 30 4519 5132;5133 14417;14418;14419 15155;15156;15157 14419 15157 20190902_JH_WT_Ubi_2 13736 14418 15156 20190902_JH_MUT_Ubi_2 13184 14418 15156 20190902_JH_MUT_Ubi_2 13184 sp|P63208|SKP1_HUMAN;sp|P63208-2|SKP1_HUMAN 36;36 sp|P63208|SKP1_HUMAN sp|P63208|SKP1_HUMAN sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 PE=1 SV=2;sp|P63208-2|SKP1_HUMAN Isoform 2 of S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 1 64.377 4.23444E-09 112.37 70.679 64.377 1 58.3324 0.0129225 58.332 1 112.368 4.23444E-09 112.37 1 64.377 0.000179936 64.377 2 M AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP TM(1)LEDLGM(1)DDEGDDDPVPLPNVNAAILKK TM(64.38)LEDLGM(64.38)DDEGDDDPVPLPNVNAAILKK 8 3 -2.0095 2111400 0 2111400 0 NaN 0 0 0 0 0 912460 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 912460 0 0 0 0 0 0 0 0 0 0 666 1082 36 36 4519 5132;5133 14417;14418;14419 15155;15156;15157 14419 15157 20190902_JH_WT_Ubi_2 13736 14418 15156 20190902_JH_MUT_Ubi_2 13184 14418 15156 20190902_JH_MUT_Ubi_2 13184 sp|P63220|RS21_HUMAN 34 sp|P63220|RS21_HUMAN sp|P63220|RS21_HUMAN sp|P63220|RS21_HUMAN 40S ribosomal protein S21 OS=Homo sapiens OX=9606 GN=RPS21 PE=1 SV=1 1 57.8039 0.000975462 102.5 66.221 57.804 1 85.8373 0.00308416 85.837 1 102.505 0.000975462 102.5 1 74.4752 0.00773326 74.475 1 57.8039 0.024209 57.804 1 M ASNRIIGAKDHASIQMNVAEVDKVTGRFNGQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPXXXXXXXX DHASIQM(1)NVAEVDK DHASIQM(57.8)NVAEVDK 7 3 -1.3042 14547000 14547000 0 0 NaN 1068500 0 4010400 0 1655600 0 0 7812100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1068500 0 0 0 0 0 4010400 0 0 0 0 0 1655600 0 0 0 0 0 0 0 0 7812100 0 0 0 0 0 667 1083 34 34 510 591 1655;1656;1657;1658 1755;1756;1757;1758 1658 1758 20190902_JH_WT_Ubi_2 6903 1657 1757 20190821_JH_WT_Ubi 5030 1657 1757 20190821_JH_WT_Ubi 5030 sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN;sp|P63241-2|IF5A1_HUMAN 20;20;50 sp|P63241|IF5A1_HUMAN sp|P63241|IF5A1_HUMAN sp|P63241|IF5A1_HUMAN Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens OX=9606 GN=EIF5A PE=1 SV=2;sp|Q6IS14|IF5AL_HUMAN Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens OX=9606 GN=EIF5AL1 PE=2 SV=2;sp|P63241-2|IF5A1_HUMAN Iso 1 45.6595 0.0111015 45.659 31.764 45.659 1 45.6595 0.0111015 45.659 1 M LDFETGDAGASATFPMQCSALRKNGFVVLKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX ADDLDFETGDAGASATFPM(1)QCSALR ADDLDFETGDAGASATFPM(45.66)QCSALR 19 3 0.39625 1417200 1417200 0 0 NaN 0 0 1417200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1417200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668 1084 20 20 53 60 174 190 174 190 20190821_JH_WT_Ubi 14480 174 190 20190821_JH_WT_Ubi 14480 174 190 20190821_JH_WT_Ubi 14480 sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN;sp|P63241-2|IF5A1_HUMAN;sp|Q9GZV4|IF5A2_HUMAN 79;79;109;79 sp|P63241|IF5A1_HUMAN sp|P63241|IF5A1_HUMAN sp|P63241|IF5A1_HUMAN Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens OX=9606 GN=EIF5A PE=1 SV=2;sp|Q6IS14|IF5AL_HUMAN Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens OX=9606 GN=EIF5AL1 PE=2 SV=2;sp|P63241-2|IF5A1_HUMAN Iso 1 73.296 0.000162245 104.78 75.682 73.296 1 45.1397 0.0340811 45.14 1 49.5946 0.025451 49.595 1 44.2518 0.0358012 44.252 1 51.7707 0.0216054 51.771 1 83.9663 0.00130067 83.966 1 73.296 0.000162245 104.78 1 M FTGKKYEDICPSTHNMDVPNIKRNDFQLIGI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPXXXXXXXXX YEDICPSTHNM(1)DVPNIK YEDICPSTHNM(73.3)DVPNIK 11 3 -0.5105 55640000 55640000 0 0 18.225 4300900 0 7589900 3318100 3580400 0 0 18481000 13891000 NaN NaN NaN NaN NaN NaN NaN 6.0535 NaN 4300900 0 0 0 0 0 7589900 0 0 3318100 0 0 3580400 0 0 0 0 0 0 0 0 18481000 0 0 13891000 0 0 669 1084 79 79 2486;5122 2823;5825 8093;16517;16518;16519;16520;16521;16522 8507;17359;17360;17361;17362;17363;17364 16522 17364 20190902_JH_WT_Ubi_3 8022 8093 8507 20190902_JH_WT_Ubi_3 7179 8093 8507 20190902_JH_WT_Ubi_3 7179 sp|P63244|RACK1_HUMAN 30 sp|P63244|RACK1_HUMAN sp|P63244|RACK1_HUMAN sp|P63244|RACK1_HUMAN Receptor of activated protein C kinase 1 OS=Homo sapiens OX=9606 GN=RACK1 PE=1 SV=3 1 126.975 5.09707E-12 126.97 79.993 126.97 1 81.3123 0.000290664 81.312 1 93.4163 3.84924E-06 93.416 1 77.543 0.000470427 77.543 1 126.975 5.09707E-12 126.97 1 M NGWVTQIATTPQFPDMILSASRDKTIIMWKL Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX GHNGWVTQIATTPQFPDM(1)ILSASR GHNGWVTQIATTPQFPDM(126.97)ILSASR 18 3 -0.54276 14199000 14199000 0 0 NaN 0 1642500 5663000 0 0 0 0 1565300 2313600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1642500 0 0 5663000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1565300 0 0 2313600 0 0 670 1085 30 30 1517 1729 4865;4866;4867;4868;4869 5117;5118;5119;5120;5121 4869 5121 20190902_JH_WT_Ubi_3 14098 4869 5121 20190902_JH_WT_Ubi_3 14098 4869 5121 20190902_JH_WT_Ubi_3 14098 sp|P63261|ACTG_HUMAN 16 sp|P63261|ACTG_HUMAN sp|P63261|ACTG_HUMAN sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 OS=Homo sapiens OX=9606 GN=ACTG1 PE=1 SV=1 1 41.8249 0.00271246 80.905 47.71 41.825 1 80.9051 0.00271246 80.905 1 41.8249 0.0285784 41.825 M MEEEIAALVIDNGSGMCKAGFAGDDAPRAVF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX EEEIAALVIDNGSGM(1)CK EEEIAALVIDNGSGM(41.82)CK 15 2 -0.3146 25613000 25613000 0 0 NaN 0 0 0 0 0 0 0 12224000 13389000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12224000 0 0 13389000 0 0 671 1087 16 16 844 952 2650;2651 2790;2791 2651 2791 20190902_JH_WT_Ubi_3 15611 2650 2790 20190902_JH_WT_Ubi_2 16200 2650 2790 20190902_JH_WT_Ubi_2 16200 sp|P67809|YBOX1_HUMAN 218 sp|P67809|YBOX1_HUMAN sp|P67809|YBOX1_HUMAN sp|P67809|YBOX1_HUMAN Nuclease-sensitive element-binding protein 1 OS=Homo sapiens OX=9606 GN=YBX1 PE=1 SV=3 1 167.1 5.94704E-105 237.51 191.16 167.1 1 166.355 2.10699E-34 166.36 1 125.98 1.70337E-15 125.98 1 237.506 5.94704E-105 237.51 1 167.1 1.77348E-34 167.1 1 M GRRPQYSNPPVQGEVMEGADNQGAGEQGRPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPXX RPQYSNPPVQGEVM(1)EGADNQGAGEQGR RPQYSNPPVQGEVM(167.1)EGADNQGAGEQGR 14 3 -0.14086 17663000 17663000 0 0 2.1782 0 0 3331400 1327600 0 0 0 6515200 6489100 NaN NaN 1.261 NaN NaN NaN NaN 1.6783 4.0937 0 0 0 0 0 0 3331400 0 0 1327600 0 0 0 0 0 0 0 0 0 0 0 6515200 0 0 6489100 0 0 672 1090 218 218 3790 4304 11978;11979;11980;11981 12562;12563;12564;12565;12566 11981 12565 20190902_JH_WT_Ubi_3 6861 11980 12564 20190902_JH_WT_Ubi_2 7162 11980 12564 20190902_JH_WT_Ubi_2 7162 sp|P67812-2|SC11A_HUMAN;sp|P67812-4|SC11A_HUMAN;sp|P67812|SC11A_HUMAN;sp|P67812-3|SC11A_HUMAN 14;40;40;40 sp|P67812-2|SC11A_HUMAN sp|P67812-2|SC11A_HUMAN sp|P67812-2|SC11A_HUMAN Isoform 2 of Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A;sp|P67812-4|SC11A_HUMAN Isoform 4 of Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A;sp|P67812|SC11 1 69.088 0.000545885 69.088 23.719 69.088 1 68.4198 0.000590534 68.42 1 69.088 0.000545885 69.088 2 M __MIVSSALMIWKGLMVITGSESPIVVVLSG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GLM(1)VITGSESPIVVVLSGSM(1)EPAFHR GLM(69.09)VITGSESPIVVVLSGSM(69.09)EPAFHR 3 3 0.80584 3599400 0 3599400 0 NaN 3147100 0 0 452300 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3147100 0 0 0 0 0 0 0 0 452300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 673 1091 14 14 1599 1823 5126;5127 5395;5396 5127 5396 20190902_JH_EV_Ubi_2 12027 5127 5396 20190902_JH_EV_Ubi_2 12027 5127 5396 20190902_JH_EV_Ubi_2 12027 sp|P67812-2|SC11A_HUMAN;sp|P67812-4|SC11A_HUMAN;sp|P67812|SC11A_HUMAN;sp|P67812-3|SC11A_HUMAN 31;57;57;57 sp|P67812-2|SC11A_HUMAN sp|P67812-2|SC11A_HUMAN sp|P67812-2|SC11A_HUMAN Isoform 2 of Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A;sp|P67812-4|SC11A_HUMAN Isoform 4 of Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A;sp|P67812|SC11 1 69.088 0.000545885 69.088 23.719 69.088 1 68.4198 0.000590534 68.42 1 69.088 0.000545885 69.088 2 M ITGSESPIVVVLSGSMEPAFHRGDLLFLTNR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX GLM(1)VITGSESPIVVVLSGSM(1)EPAFHR GLM(69.09)VITGSESPIVVVLSGSM(69.09)EPAFHR 20 3 0.80584 3599400 0 3599400 0 NaN 3147100 0 0 452300 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3147100 0 0 0 0 0 0 0 0 452300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 674 1091 31 31 1599 1823 5126;5127 5395;5396 5127 5396 20190902_JH_EV_Ubi_2 12027 5127 5396 20190902_JH_EV_Ubi_2 12027 5127 5396 20190902_JH_EV_Ubi_2 12027 sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN 84;84;83;84 sp|P68133|ACTS_HUMAN sp|P68133|ACTS_HUMAN sp|P68133|ACTS_HUMAN Actin, alpha skeletal muscle OS=Homo sapiens OX=9606 GN=ACTA1 PE=1 SV=1;sp|P68032|ACTC_HUMAN Actin, alpha cardiac muscle 1 OS=Homo sapiens OX=9606 GN=ACTC1 PE=1 SV=1;sp|P63267|ACTH_HUMAN Actin, gamma-enteric smooth muscle OS=Homo sapie 1 128.729 3.41575E-15 158.89 122.45 128.73 1 80.5075 0.0025006 80.507 1 124.62 2.05291E-07 124.62 1 158.894 3.41575E-15 158.89 1 103.296 0.000305634 103.3 1 103.135 0.000311027 103.13 1 113.369 3.44374E-05 113.37 1 128.729 1.25545E-07 128.73 1 M LKYPIEHGIITNWDDMEKIWHHTFYNELRVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX YPIEHGIITNWDDM(1)EK YPIEHGIITNWDDM(128.73)EK 14 3 0.46109 453910000 453910000 0 0 3.228 4656000 8601500 135570000 0 0 14271000 14590000 159750000 116470000 NaN 1.8187 1.9705 0 NaN 2.4855 2.7101 6.0022 4.1773 4656000 0 0 8601500 0 0 135570000 0 0 0 0 0 0 0 0 14271000 0 0 14590000 0 0 159750000 0 0 116470000 0 0 675 1094 84 84 5189 5905 16736;16737;16738;16739;16740;16741;16742 17593;17594;17595;17596;17597;17598;17599 16742 17599 20190902_JH_WT_Ubi_3 9797 16740 17597 20190821_JH_WT_Ubi 8071 16740 17597 20190821_JH_WT_Ubi 8071 sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN 404;383;404 sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;sp|P68104-2|EF1A1_HUMAN Isoform 2 of Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1;sp|Q5VTE0|EF1A3_HUMAN Putative elongation factor 1-alpha-like 3 1 70.3162 3.51334E-07 95.223 71.015 70.316 1 77.543 3.53736E-05 77.543 1 58.9376 0.000758523 81.619 0.999949 42.9502 3.51334E-07 95.223 1 75.4834 4.27782E-05 75.483 1 70.3162 0.000142212 70.316 1;2 M DGPKFLKSGDAAIVDMVPGKPMCVESFSDYP X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPP SGDAAIVDM(1)VPGKPM(1)CVESFSDYPPLGR SGDAAIVDM(70.32)VPGKPM(70.32)CVESFSDYPPLGR 9 3 0.13994 9616400 2485600 7130800 0 7.1841 0 766550 0 0 0 1079300 607590 4069600 1799500 NaN 0.57267 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 766550 0 0 0 0 0 0 0 0 0 0 0 1079300 0 607590 0 0 584140 3485400 0 0 1799500 0 676 1096 404 404 1246;3913 1409;4441;4443 3961;12365;12366;12367;12368;12372;12373 4166;12964;12965;12966;12967;12968;12969;12970;12971;12976;12977 12368 12970 20190902_JH_WT_Ubi_3 12232 12372 12976 20190902_JH_MUT_Ubi_3 11720 12372 12976 20190902_JH_MUT_Ubi_3 11720 sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN 335;314 sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;sp|P68104-2|EF1A1_HUMAN Isoform 2 of Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 1 40.2713 0.00106535 40.271 26.506 40.271 1 40.2713 0.00106535 40.271 1 M VRRGNVAGDSKNDPPMEAAGFTAQVIILNHP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP NDPPM(1)EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK NDPPM(40.27)EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 5 5 -1.3422 112340000 112340000 0 0 1.0534 0 0 112340000 0 0 0 0 0 0 NaN 0 1.589 NaN NaN 0 NaN NaN 0 0 0 0 0 0 0 112340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 677 1096 335 335 3026 3458 9767 10290 9767 10290 20190821_JH_WT_Ubi 11432 9767 10290 20190821_JH_WT_Ubi 11432 9767 10290 20190821_JH_WT_Ubi 11432 sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN;sp|Q05639|EF1A2_HUMAN 102;102;102;102 sp|P68104|EF1A1_HUMAN;sp|Q05639|EF1A2_HUMAN sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;sp|P68104-2|EF1A1_HUMAN Isoform 2 of Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1;sp|Q5VTE0|EF1A3_HUMAN Putative elongation factor 1-alpha-like 3 1 187.094 3.05056E-61 192.2 144.49 187.09 1 192.204 3.05056E-61 192.2 1 143.212 6.4331E-26 143.21 1 92.2384 3.25424E-07 92.238 1 187.094 8.601E-61 187.09 1 M ITIIDAPGHRDFIKNMITGTSQADCAVLIVA;VTIIDAPGHRDFIKNMITGTSQADCAVLIVA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)ITGTSQADCAVLIVAAGVGEFEAGISK NM(187.09)ITGTSQADCAVLIVAAGVGEFEAGISK 2 3 -0.07687 32977000 32977000 0 0 1.7873 0 0 25454000 0 0 1799500 0 3243100 2480300 0 0 2.3991 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 25454000 0 0 0 0 0 0 0 0 1799500 0 0 0 0 0 3243100 0 0 2480300 0 0 678 1096;1160 102;102 102 3162 3614 10178;10179;10180;10181 10716;10717;10718;10719;10720 10181 10720 20190902_JH_WT_Ubi_3 15818 10179 10717 20190821_JH_WT_Ubi 15879 10179 10717 20190821_JH_WT_Ubi 15879 sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN 276;255;276 sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;sp|P68104-2|EF1A1_HUMAN Isoform 2 of Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1;sp|Q5VTE0|EF1A3_HUMAN Putative elongation factor 1-alpha-like 3 1 88.5548 4.4916E-19 160.03 96.735 88.555 1 89.2007 4.85338E-19 159.14 1 90.9776 7.43198E-06 97.214 1 88.5548 5.26563E-07 123.95 1 91.3776 1.37685E-08 133.9 1 111.246 4.4916E-19 160.03 1 73.994 5.31941E-14 153.22 1 89.3919 8.37895E-08 127.3 1 132.154 3.22534E-08 132.15 1 106.275 0.000131031 106.28 1 M TVPVGRVETGVLKPGMVVTFAPVNVTTEVKS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPX VETGVLKPGM(1)VVTFAPVNVTTEVK VETGVLKPGM(88.55)VVTFAPVNVTTEVK 10 3 -0.5498 259860000 259860000 0 0 2.4743 12592000 4304500 10436000 15075000 20540000 7422100 5689400 9546200 8878000 0.33739 0.25537 NaN 1.2656 1.6852 0.52236 0.7263 3.6109 4.3064 12592000 0 0 4304500 0 0 10436000 0 0 15075000 0 0 20540000 0 0 7422100 0 0 5689400 0 0 9546200 0 0 8878000 0 0 679 1096 276 276 3360;4804 3835;5450 10756;10757;10758;10759;10760;10761;10762;10763;10764;10765;15413;15414;15415;15416;15417;15418;15419 11316;11317;11318;11319;11320;11321;11322;11323;11324;11325;16188;16189;16190;16191;16192;16193;16194;16195 15419 16195 20190821_JH_WT_Ubi 11011 10758 11318 20190902_JH_EV_Ubi_3 10388 10758 11318 20190902_JH_EV_Ubi_3 10388 sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN 410;389;410 sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;sp|P68104-2|EF1A1_HUMAN Isoform 2 of Elongation factor 1-alpha 1 OS=Homo sapiens OX=9606 GN=EEF1A1;sp|Q5VTE0|EF1A3_HUMAN Putative elongation factor 1-alpha-like 3 1 70.3162 4.43543E-06 131.32 89.638 70.316 1 77.543 3.53736E-05 77.543 1 107.994 0.000294393 107.99 1 90.6885 0.00158049 90.689 1 84.4684 0.00262712 84.468 1 58.9376 7.15752E-05 78.122 1 75.4834 4.43543E-06 131.32 1 70.3162 0.000142212 107.99 1;2 M KSGDAAIVDMVPGKPMCVESFSDYPPLGRFA GlyGly (K);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPXX SGDAAIVDM(1)VPGKPM(1)CVESFSDYPPLGR SGDAAIVDM(70.32)VPGKPM(70.32)CVESFSDYPPLGR 15 3 0.13994 20556000 13426000 7130800 0 15.357 0 766550 1631600 680380 1566100 1079300 0 8445000 5624800 NaN 0.57267 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 766550 0 1631600 0 0 680380 0 0 1566100 0 0 0 1079300 0 0 0 0 4959500 3485400 0 3825300 1799500 0 680 1096 410 410 3459;3913 3945;4441;4443 11096;11097;11098;11099;11100;12365;12366;12367;12368;12371 11661;11662;11663;11664;11665;12964;12965;12966;12967;12968;12969;12970;12971;12975 12368 12970 20190902_JH_WT_Ubi_3 12232 11099 11664 20190902_JH_WT_Ubi_2 11677 11099 11664 20190902_JH_WT_Ubi_2 11677 sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN 413;297;398;413;413;378;413;413;413;347;413 sp|P68363|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN sp|Q9BQE3|TBA1C_HUMAN sp|P68363|TBA1B_HUMAN Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B PE=1 SV=1;sp|P68363-2|TBA1B_HUMAN Isoform 2 of Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B;sp|P68366-2|TBA4A_HUMAN Isoform 2 of Tubulin alpha-4A chain OS=Homo sapie 1 187.563 1.61816E-39 187.56 153.29 187.56 1 124.454 3.58124E-09 124.45 1 146.882 3.70485E-15 146.88 1 176.435 6.33979E-31 176.44 1 121.512 2.66113E-07 121.51 1 178.987 3.8899E-31 178.99 1 187.563 1.61816E-39 187.56 1 M MYAKRAFVHWYVGEGMEEGEFSEAREDMAAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX AFVHWYVGEGM(1)EEGEFSEAR AFVHWYVGEGM(187.56)EEGEFSEAR 11 3 -0.27502 181620000 181620000 0 0 2.981 3953800 12813000 82607000 0 0 6816900 0 36168000 39263000 NaN 2.3983 1.8023 NaN NaN NaN NaN 7.8093 7.6741 3953800 0 0 12813000 0 0 82607000 0 0 0 0 0 0 0 0 6816900 0 0 0 0 0 36168000 0 0 39263000 0 0 681 1097;1098;1515;1858 413;398;413;413 413 116 131 413;414;415;416;417;418 459;460;461;462;463;464 418 464 20190902_JH_WT_Ubi_3 11011 418 464 20190902_JH_WT_Ubi_3 11011 418 464 20190902_JH_WT_Ubi_3 11011 sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN 302;186;287;302;302;267;302;302;302 sp|P68363|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN sp|P68363|TBA1B_HUMAN sp|P68363|TBA1B_HUMAN Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B PE=1 SV=1;sp|P68363-2|TBA1B_HUMAN Isoform 2 of Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B;sp|P68366-2|TBA4A_HUMAN Isoform 2 of Tubulin alpha-4A chain OS=Homo sapie 1 137.867 2.51856E-31 170.32 136.1 137.87 1 153.762 3.31407E-23 153.76 1 123.363 2.99268E-12 123.36 1 140.513 3.07365E-30 161.97 1 170.319 2.51856E-31 170.32 1 121.647 2.54234E-10 121.65 1 110.162 3.58057E-30 160.47 1 137.867 2.48976E-13 137.87 1 M SVAEITNACFEPANQMVKCDPRHGKYMACCL X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX AYHEQLSVAEITNACFEPANQM(1)VK AYHEQLSVAEITNACFEPANQM(137.87)VK 22 3 0.20012 167710000 167710000 0 0 3.0979 14947000 4568500 56227000 7969400 5021200 0 0 30092000 38586000 3.3158 1.2455 2.3624 NaN NaN 0 NaN 3.2361 3.5827 14947000 0 0 4568500 0 0 56227000 0 0 7969400 0 0 5021200 0 0 0 0 0 0 0 0 30092000 0 0 38586000 0 0 682 1097;1098;1515 302;287;302 302 338 398;400 1136;1137;1138;1139;1140;1141;1142;1149;1150;1151 1223;1224;1225;1226;1227;1228;1229;1236;1237;1238 1151 1238 20190902_JH_WT_Ubi_3 10918 1137 1224 20190902_JH_EV_Ubi_2 9629 1137 1224 20190902_JH_EV_Ubi_2 9629 sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN 36;36;36;36;36;36;36 sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN sp|Q9BQE3|TBA1C_HUMAN sp|P68363|TBA1B_HUMAN Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B PE=1 SV=1;sp|P68363-2|TBA1B_HUMAN Isoform 2 of Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B;sp|Q71U36|TBA1A_HUMAN Tubulin alpha-1A chain OS=Homo sapiens OX=9606 GN=T 1 68.2842 7.81239E-06 68.284 51.621 68.284 1 68.2842 7.81239E-06 68.284 1 M WELYCLEHGIQPDGQMPSDKTIGGGDDSFNT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM(1)PSDK ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM(68.28)PSDK 34 4 -0.16449 7871800 7871800 0 0 NaN 0 0 7871800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 7871800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 683 1097;1515;1858 36;36;36 36 810 915 2542 2675;2676 2542 2675 20190821_JH_WT_Ubi 12949 2542 2675 20190821_JH_WT_Ubi 12949 2542 2675 20190821_JH_WT_Ubi 12949 sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN 154;154;119;154 sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN sp|Q9BQE3|TBA1C_HUMAN sp|P68363|TBA1B_HUMAN Tubulin alpha-1B chain OS=Homo sapiens OX=9606 GN=TUBA1B PE=1 SV=1;sp|Q71U36|TBA1A_HUMAN Tubulin alpha-1A chain OS=Homo sapiens OX=9606 GN=TUBA1A PE=1 SV=1;sp|Q71U36-2|TBA1A_HUMAN Isoform 2 of Tubulin alpha-1A chain OS=Homo sapiens OX 1 58.2488 3.56508E-22 130.7 110.21 58.249 1 130.697 3.56508E-22 130.7 1 58.2488 0.000395297 58.249 1 M HSFGGGTGSGFTSLLMERLSVDYGKKSKLEF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX LADQCTGLQGFLVFHSFGGGTGSGFTSLLM(1)ER LADQCTGLQGFLVFHSFGGGTGSGFTSLLM(58.25)ER 30 3 -0.40331 31335000 31335000 0 0 NaN 0 0 14813000 0 0 0 0 16522000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 14813000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16522000 0 0 0 0 0 684 1097;1515;1858 154;154;154 154 2494 2831 8113;8114 8530;8531 8114 8531 20190902_JH_WT_Ubi_2 15973 8113 8530 20190821_JH_WT_Ubi 15187 8113 8530 20190821_JH_WT_Ubi 15187 sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN 139;154 sp|P68366-2|TBA4A_HUMAN sp|P68366-2|TBA4A_HUMAN sp|P68366-2|TBA4A_HUMAN Isoform 2 of Tubulin alpha-4A chain OS=Homo sapiens OX=9606 GN=TUBA4A;sp|P68366|TBA4A_HUMAN Tubulin alpha-4A chain OS=Homo sapiens OX=9606 GN=TUBA4A PE=1 SV=1 1 77.9165 4.17831E-06 77.917 60.27 77.917 1 59.5645 0.000320901 59.565 1 77.9165 4.17831E-06 77.917 1 M HSFGGGTGSGFTSLLMERLSVDYGKKSKLEF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX LSDQCTGLQGFLVFHSFGGGTGSGFTSLLM(1)ER LSDQCTGLQGFLVFHSFGGGTGSGFTSLLM(77.92)ER 30 3 0.69784 9712100 9712100 0 0 NaN 0 0 2719000 0 0 0 0 6993100 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2719000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6993100 0 0 0 0 0 685 1098 139 139 2803 3179 9038;9039 9509;9510 9039 9510 20190902_JH_WT_Ubi_2 15925 9039 9510 20190902_JH_WT_Ubi_2 15925 9039 9510 20190902_JH_WT_Ubi_2 15925 sp|P68431|H31_HUMAN 91 sp|P68431|H31_HUMAN sp|P68431|H31_HUMAN sp|P68431|H31_HUMAN Histone H3.1 OS=Homo sapiens OX=9606 GN=HIST1H3A PE=1 SV=2 1 97.0589 1.03177E-08 97.059 77.234 97.059 1 97.0589 1.03177E-08 97.059 1 M AQDFKTDLRFQSSAVMALQEACEAYLVGLFE X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP FQSSAVM(1)ALQEACEAYLVGLFEDTNLCAIHAK FQSSAVM(97.06)ALQEACEAYLVGLFEDTNLCAIHAK 7 3 1.5356 514670 514670 0 0 NaN 0 514670 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 514670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 686 1101 91 91 1288 1460 4071 4281 4071 4281 20190821_JH_MUT_Ubi 14766 4071 4281 20190821_JH_MUT_Ubi 14766 4071 4281 20190821_JH_MUT_Ubi 14766 sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN 445;398 sp|P78371|TCPB_HUMAN sp|P78371|TCPB_HUMAN sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens OX=9606 GN=CCT2 PE=1 SV=4;sp|P78371-2|TCPB_HUMAN Isoform 2 of T-complex protein 1 subunit beta OS=Homo sapiens OX=9606 GN=CCT2 1 112.581 1.80186E-08 112.58 67.441 112.58 1 112.581 1.80186E-08 112.58 1 M GKEAVAMESYAKALRMLPTIIADNAGYDSAD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LPTIIADNAGYDSADLVAQLR M(112.58)LPTIIADNAGYDSADLVAQLR 1 3 0.79305 1513600 1513600 0 0 NaN 0 0 0 0 0 0 0 0 1513600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1513600 0 0 687 1105 445 445 2941 3343 9480 9980 9480 9980 20190902_JH_WT_Ubi_3 14745 9480 9980 20190902_JH_WT_Ubi_3 14745 9480 9980 20190902_JH_WT_Ubi_3 14745 sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN 310;263 sp|P78371|TCPB_HUMAN sp|P78371|TCPB_HUMAN sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens OX=9606 GN=CCT2 PE=1 SV=4;sp|P78371-2|TCPB_HUMAN Isoform 2 of T-complex protein 1 subunit beta OS=Homo sapiens OX=9606 GN=CCT2 1 42.1658 0.0129937 42.166 11.417 42.166 1 42.1658 0.0129937 42.166 1 M LIYNYPEQLFGAAGVMAIEHADFAGVERLAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX QLIYNYPEQLFGAAGVM(1)AIEHADFAGVER QLIYNYPEQLFGAAGVM(42.17)AIEHADFAGVER 17 3 1.2622 1210700 1210700 0 0 NaN 0 0 0 0 0 0 0 1210700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1210700 0 0 0 0 0 688 1105 310 310 3655 4164 11704 12282 11704 12282 20190902_JH_WT_Ubi_2 15803 11704 12282 20190902_JH_WT_Ubi_2 15803 11704 12282 20190902_JH_WT_Ubi_2 15803 sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN 1724;1724 sp|P78527-2|PRKDC_HUMAN sp|P78527-2|PRKDC_HUMAN sp|P78527-2|PRKDC_HUMAN Isoform 2 of DNA-dependent protein kinase catalytic subunit OS=Homo sapiens OX=9606 GN=PRKDC;sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens OX=9606 GN=PRKDC PE=1 SV=3 1 63.7268 0.00293788 83.292 38.012 63.727 1 83.292 0.00293788 83.292 1 55.3353 0.0240926 55.335 1 54.9505 0.0245814 54.95 1 62.077 0.0155274 62.077 1 63.7268 0.0136568 63.727 1 M ELRRVLEQLIVAHFPMQSREFPPGTPRFNNY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPXXXXXXXXXXXX VLEQLIVAHFPM(1)QSR VLEQLIVAHFPM(63.73)QSR 12 3 1.3261 24439000 24439000 0 0 13.8 0 0 9188300 0 0 2185800 2485500 5911200 4668400 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9188300 0 0 0 0 0 0 0 0 2185800 0 0 2485500 0 0 5911200 0 0 4668400 0 0 689 1107 1724 1724 4895 5558 15727;15728;15729;15730;15731 16528;16529;16530;16531;16532 15731 16532 20190902_JH_WT_Ubi_3 11578 15729 16530 20190821_JH_WT_Ubi 10171 15729 16530 20190821_JH_WT_Ubi 10171 sp|P98172|EFNB1_HUMAN;sp|P52799|EFNB2_HUMAN 334;321 sp|P98172|EFNB1_HUMAN sp|P98172|EFNB1_HUMAN sp|P98172|EFNB1_HUMAN Ephrin-B1 OS=Homo sapiens OX=9606 GN=EFNB1 PE=1 SV=1;sp|P52799|EFNB2_HUMAN Ephrin-B2 OS=Homo sapiens OX=9606 GN=EFNB2 PE=1 SV=1 1 48.2865 8.29639E-16 125.37 90.211 48.286 1 102.16 3.2539E-10 102.16 1 75.9557 9.54295E-05 75.956 1 100.924 3.69689E-10 100.92 1 81.329 5.05251E-05 81.329 1 91.7334 6.7315E-07 91.733 1 114.663 1.09255E-12 114.66 1 125.371 8.29639E-16 125.37 1 73.4042 0.000193366 73.404 1 48.2865 9.2122E-05 76.351 1 M KVSGDYGHPVYIVQEMPPQSPANIYYKV___ X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX VSGDYGHPVYIVQEM(1)PPQSPANIYYKV VSGDYGHPVYIVQEM(48.29)PPQSPANIYYKV 15 3 -0.64576 64580000 64580000 0 0 4.4621 4843000 4427200 16155000 2423400 2641300 2755400 4950400 10046000 12768000 4.4952 1.7637 2.4336 NaN NaN 2.6034 3.2162 6.0915 NaN 4843000 0 0 4427200 0 0 16155000 0 0 2423400 0 0 2641300 0 0 2755400 0 0 4950400 0 0 10046000 0 0 12768000 0 0 690 1115 334 334 5010;5011 5685;5686;5688 16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16101 16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907;16917 16101 16917 20190902_JH_WT_Ubi_3 12262 16091 16902 20190902_JH_MUT_Ubi_3 10792 16091 16902 20190902_JH_MUT_Ubi_3 10792 sp|P98179|RBM3_HUMAN 64 sp|P98179|RBM3_HUMAN sp|P98179|RBM3_HUMAN sp|P98179|RBM3_HUMAN RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1 1 88.5614 6.1879E-06 114.21 76.019 88.561 1 90.7071 0.000346639 90.707 1 100.112 0.00012516 100.11 1 86.2142 0.000531208 86.214 1 114.208 6.1879E-06 114.21 1 88.5614 0.00040009 88.561 1 M FGFITFTNPEHASVAMRAMNGESLDGRQIRV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GFGFITFTNPEHASVAM(1)R GFGFITFTNPEHASVAM(88.56)R 17 3 1.6056 81233000 81233000 0 0 3.4261 0 5644000 28103000 0 0 0 9090400 14767000 23629000 NaN 1.5323 2.4994 NaN NaN 0 5.3431 3.8268 NaN 0 0 0 5644000 0 0 28103000 0 0 0 0 0 0 0 0 0 0 0 9090400 0 0 14767000 0 0 23629000 0 0 691 1116 64 64 1455 1656 4617;4618;4619;4620;4621 4850;4851;4852;4853;4854 4621 4854 20190902_JH_WT_Ubi_3 11645 4620 4853 20190902_JH_WT_Ubi_2 12136 4620 4853 20190902_JH_WT_Ubi_2 12136 sp|P98194-2|AT2C1_HUMAN;sp|P98194-4|AT2C1_HUMAN;sp|P98194|AT2C1_HUMAN;sp|P98194-3|AT2C1_HUMAN;sp|P98194-5|AT2C1_HUMAN;sp|P98194-8|AT2C1_HUMAN;sp|P98194-9|AT2C1_HUMAN;sp|P98194-6|AT2C1_HUMAN;sp|P98194-7|AT2C1_HUMAN 602;586;602;586;602;597;602;602;636 sp|P98194-2|AT2C1_HUMAN sp|P98194-2|AT2C1_HUMAN sp|P98194-2|AT2C1_HUMAN Isoform 2 of Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens OX=9606 GN=ATP2C1;sp|P98194-4|AT2C1_HUMAN Isoform 4 of Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens OX=9606 GN=ATP2C1;sp|P98194|AT2C1_HUMAN Ca 1 83.216 0.0002554 83.216 56.367 83.216 1 83.216 0.0002554 83.216 1 M YSKTSQSVSGEEIDAMDVQQLSQIVPKVAVF X;X;GlyGly (K);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX LGLYSKTSQSVSGEEIDAM(1)DVQQLSQIVPK LGLYSKTSQSVSGEEIDAM(83.22)DVQQLSQIVPK 19 3 4.3881 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 692 1117 602 602 2622 2979 8509 8950 8509 8950 20190821_JH_WT_Ubi 11966 8509 8950 20190821_JH_WT_Ubi 11966 8509 8950 20190821_JH_WT_Ubi 11966 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 1538;1538 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 64.7298 0.0269036 64.73 42.984 64.73 1 64.7298 0.0269036 64.73 M QSVELCKKDSLYKDAMQYASESKDTELAEEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPXXXXXXXX DAM(1)QYASESK DAM(64.73)QYASESK 3 2 -0.015884 2836200 2836200 0 0 NaN 0 0 2836200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2836200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693 1123 1538 1538 390 459 1275 1362 1275 1362 20190821_JH_WT_Ubi 3545 1275 1362 20190821_JH_WT_Ubi 3545 1275 1362 20190821_JH_WT_Ubi 3545 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 32;32 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 94.5697 6.82982E-27 146.8 114.47 94.57 1 146.803 6.82982E-27 146.8 1 94.5697 2.86177E-07 94.57 1 M NLGINPANIGFSTLTMESDKFICIREKVGEQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ) PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX FQEHLQLQNLGINPANIGFSTLTM(1)ESDK FQEHLQLQNLGINPANIGFSTLTM(94.57)ESDK 24 3 0.16992 6961800 6961800 0 0 2.4032 0 0 5313400 0 0 0 0 1648400 0 NaN NaN 1.8342 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5313400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1648400 0 0 0 0 0 694 1123 32 32 1282 1451 4054;4055 4262;4263 4055 4263 20190902_JH_WT_Ubi_2 14740 4054 4262 20190821_JH_WT_Ubi 13560 4054 4262 20190821_JH_WT_Ubi 13560 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 1592;1592 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 123.758 1.1352E-07 123.76 72.547 123.76 1 76.3575 0.00165345 76.358 1 86.5391 0.000733728 86.539 1 123.758 1.1352E-07 123.76 2;3 M LRPDVVLETAWRHNIMDFAMPYFIQVMKEYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX HNIM(1)DFAM(1)PYFIQVM(1)K HNIM(123.76)DFAM(123.76)PYFIQVM(123.76)K 4 3 -0.17326 16062000 0 1473100 14589000 6.0829 0 0 4809100 0 0 0 0 4921800 6331100 NaN NaN 1.8213 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1473100 3336000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4921800 0 0 6331100 695 1123 1592 1592 1955 2224;2225 6356;6357;6358;6359 6687;6688;6689;6690;6691;6692 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 1596;1596 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 123.758 1.1352E-07 123.76 72.547 123.76 1 76.3575 0.00165345 76.358 1 86.5391 0.000733728 86.539 1 123.758 1.1352E-07 123.76 2;3 M VVLETAWRHNIMDFAMPYFIQVMKEYLTKVD X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPXXXXXXX HNIM(1)DFAM(1)PYFIQVM(1)K HNIM(123.76)DFAM(123.76)PYFIQVM(123.76)K 8 3 -0.17326 16062000 0 1473100 14589000 6.0829 0 0 4809100 0 0 0 0 4921800 6331100 NaN NaN 1.8213 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1473100 3336000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4921800 0 0 6331100 696 1123 1596 1596 1955 2224;2225 6356;6357;6358;6359 6687;6688;6689;6690;6691;6692 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 1603;1603 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 123.758 1.1352E-07 123.76 72.547 123.76 1 76.3575 0.00165345 76.358 1 86.5391 0.000733728 86.539 1 123.758 1.1352E-07 123.76 3 M RHNIMDFAMPYFIQVMKEYLTKVDKLDASES X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX HNIM(1)DFAM(1)PYFIQVM(1)K HNIM(123.76)DFAM(123.76)PYFIQVM(123.76)K 15 3 -0.17326 14589000 0 0 14589000 5.525 0 0 3336000 0 0 0 0 4921800 6331100 NaN NaN 1.2634 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 3336000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4921800 0 0 6331100 697 1123 1603 1603 1955 2224;2225 6356;6357;6358 6687;6688;6689;6690;6691 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 6358 6691 20190902_JH_WT_Ubi_3 11961 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 132;132 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 46.2948 0.00918245 46.295 22.786 46.295 1 46.2948 0.00918245 46.295 1 M NTVALVTDNAVYHWSMEGESQPVKMFDRHSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX WISLNTVALVTDNAVYHWSM(1)EGESQPVK WISLNTVALVTDNAVYHWSM(46.29)EGESQPVK 20 3 -0.76485 1036400 1036400 0 0 NaN 0 0 0 0 0 0 0 1036400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1036400 0 0 0 0 0 698 1123 132 132 5092 5787 16431 17268 16431 17268 20190902_JH_WT_Ubi_2 15724 16431 17268 20190902_JH_WT_Ubi_2 15724 16431 17268 20190902_JH_WT_Ubi_2 15724 sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN 295;295 sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN sp|Q00610-2|CLH1_HUMAN Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC;sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 1 65.9493 0.00449131 65.949 41.411 65.949 1 65.9493 0.00449131 65.949 1 M GYIHLYDLETGTCIYMNRISGETIFVTAPHE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX YGYIHLYDLETGTCIYM(1)NR YGYIHLYDLETGTCIYM(65.95)NR 17 3 -0.058993 5016800 5016800 0 0 NaN 0 0 5016800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5016800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 699 1123 295 295 5151 5858 16611 17459 16611 17459 20190821_JH_WT_Ubi 11156 16611 17459 20190821_JH_WT_Ubi 11156 16611 17459 20190821_JH_WT_Ubi 11156 sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN 534;515 sp|Q00839|HNRPU_HUMAN sp|Q00839|HNRPU_HUMAN sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6;sp|Q00839-2|HNRPU_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU 1 77.5544 0.000771487 79.88 52.731 77.554 1 70.8373 0.00297542 70.837 1 77.1369 0.000988602 77.137 1 53.9578 0.0182364 53.958 1 79.88 0.000771487 79.88 1 56.5526 0.0148654 56.553 1 77.5544 0.000955553 77.554 1 M AENPGKYNILGTNTIMDKMMVAGFKKQMADT X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX HAAENPGKYNILGTNTIM(1)DK HAAENPGKYNILGTNTIM(77.55)DK 18 3 0.42769 14521000 14521000 0 0 NaN 1293600 0 0 1504400 1450800 0 1840800 5154600 3276600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1293600 0 0 0 0 0 0 0 0 1504400 0 0 1450800 0 0 0 0 0 1840800 0 0 5154600 0 0 3276600 0 0 700 1128 534 534 1781 2022 5668;5669;5670;5671;5672;5673 5970;5971;5972;5973;5974;5975 5673 5975 20190902_JH_WT_Ubi_3 7707 5671 5973 20190902_JH_MUT_Ubi_3 6584 5671 5973 20190902_JH_MUT_Ubi_3 6584 sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN 53;53 sp|Q00839|HNRPU_HUMAN sp|Q00839|HNRPU_HUMAN sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6;sp|Q00839-2|HNRPU_HUMAN Isoform 2 of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU 1 50.5335 1.20389E-05 75.156 52.885 50.534 1 75.1557 1.20389E-05 75.156 1 50.5335 0.002676 50.534 1 M LQAALDDEEAGGRPAMEPGNGSLDLGGDSAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LQAALDDEEAGGRPAM(1)EPGNGSLDLGGDSAGR LQAALDDEEAGGRPAM(50.53)EPGNGSLDLGGDSAGR 16 3 0.032461 9028800 9028800 0 0 NaN 0 0 2789400 0 0 0 0 6239500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2789400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6239500 0 0 0 0 0 701 1128 53 53 2768 3143 8949;8950 9414;9415 8950 9415 20190902_JH_WT_Ubi_2 10668 8949 9414 20190821_JH_WT_Ubi 8443 8949 9414 20190821_JH_WT_Ubi 8443 sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN 206;206;193 sp|Q01082|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN sp|Q01082|SPTB2_HUMAN sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1 PE=1 SV=2;sp|Q01082-2|SPTB2_HUMAN Isoform Short of Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1;sp|Q01082-3|SPTB2_HUMAN Isoform 2 o 1 86.189 0.00718963 91.549 63.725 86.189 1 58.6296 0.034623 58.63 1 61.7646 0.0294506 61.765 1 91.5493 0.00718963 91.549 1 65.2776 0.0249294 65.278 1 62.1662 0.0287879 62.166 1 86.189 0.0096705 86.189 1 M PNVNIHNFTTSWRDGMAFNALIHKHRPDLID X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX DGM(1)AFNALIHK DGM(86.19)AFNALIHK 3 3 0.22271 15217000 15217000 0 0 2.7517 0 0 1627100 1891000 0 1562100 2662800 3425700 4047900 NaN NaN 0.9851 NaN NaN 1.2749 3.7315 NaN 2.0873 0 0 0 0 0 0 1627100 0 0 1891000 0 0 0 0 0 1562100 0 0 2662800 0 0 3425700 0 0 4047900 0 0 702 1129;1130 206;193 206 487 565 1582;1583;1584;1585;1586;1587 1675;1676;1677;1678;1679;1680 1587 1680 20190902_JH_WT_Ubi_3 8779 1583 1676 20190902_JH_MUT_Ubi_2 8050 1583 1676 20190902_JH_MUT_Ubi_2 8050 sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN 1090;1090;1077 sp|Q01082|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN sp|Q01082|SPTB2_HUMAN sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1 PE=1 SV=2;sp|Q01082-2|SPTB2_HUMAN Isoform Short of Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1;sp|Q01082-3|SPTB2_HUMAN Isoform 2 o 1 88.311 0.00106127 88.311 48.887 88.311 1 88.311 0.00106127 88.311 1 M QSWLSRTQTAIASEDMPNTLTEAEKLLTQHE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPXXXXXX TQTAIASEDM(1)PNTLTEAEK TQTAIASEDM(88.31)PNTLTEAEK 10 2 -0.47326 2040400 2040400 0 0 NaN 2040400 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2040400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 703 1129;1130 1090;1077 1090 4590 5211 14667 15411 14667 15411 20190821_JH_EV_Ubi 6789 14667 15411 20190821_JH_EV_Ubi 6789 14667 15411 20190821_JH_EV_Ubi 6789 sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN 146;145 sp|Q01518|CAP1_HUMAN sp|Q01518|CAP1_HUMAN sp|Q01518|CAP1_HUMAN Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 PE=1 SV=5;sp|Q01518-2|CAP1_HUMAN Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 1 88.176 1.47428E-11 124.69 94.501 88.176 1 124.691 1.47428E-11 124.69 1 73.21 0.000629877 73.21 1 84.7619 0.00429277 84.762 1 121.818 1.25312E-09 121.82 1 88.176 6.77764E-06 88.176 1 M LSAVSESIQALGWVAMAPKPGPYVKEMNDAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX LFNHLSAVSESIQALGWVAM(1)APK LFNHLSAVSESIQALGWVAM(88.18)APK 20 3 -0.0056055 20256000 20256000 0 0 1.2681 0 0 12395000 0 0 1148000 880280 3767900 2064400 NaN 0 1.1176 NaN NaN NaN NaN NaN 0.75881 0 0 0 0 0 0 12395000 0 0 0 0 0 0 0 0 1148000 0 0 880280 0 0 3767900 0 0 2064400 0 0 704 1132 146 146 2591 2944 8409;8410;8411;8412;8413 8842;8843;8844;8845;8846 8413 8846 20190902_JH_WT_Ubi_3 14658 8411 8844 20190821_JH_WT_Ubi 14279 8411 8844 20190821_JH_WT_Ubi 14279 sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN 437;436 sp|Q01518|CAP1_HUMAN sp|Q01518|CAP1_HUMAN sp|Q01518|CAP1_HUMAN Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 PE=1 SV=5;sp|Q01518-2|CAP1_HUMAN Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 1 86.9965 5.70701E-06 86.997 57.268 86.997 1 62.6776 0.00156927 62.678 1 86.9965 5.70701E-06 86.997 1 M KNSLDCEIVSAKSSEMNVLIPTEGGDFNEFP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP SSEM(1)NVLIPTEGGDFNEFPVPEQFK SSEM(87)NVLIPTEGGDFNEFPVPEQFK 4 3 -0.63746 6148200 6148200 0 0 NaN 0 0 3026000 0 0 0 0 0 3122200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3026000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3122200 0 0 705 1132 437 437 4149 4715 13155;13156 13795;13796 13156 13796 20190902_JH_WT_Ubi_3 14897 13156 13796 20190902_JH_WT_Ubi_3 14897 13156 13796 20190902_JH_WT_Ubi_3 14897 sp|Q01650|LAT1_HUMAN 26 sp|Q01650|LAT1_HUMAN sp|Q01650|LAT1_HUMAN sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens OX=9606 GN=SLC7A5 PE=1 SV=2 1 137.428 4.56157E-43 172.37 134.11 137.43 1 165.473 1.49965E-29 165.47 1 165.532 1.48388E-29 165.53 1 140.123 5.07347E-16 140.12 1 131.858 3.28554E-11 131.86 1 68.6761 4.56157E-43 172.37 1 135.536 8.40082E-16 135.54 1 81.3791 0.000224348 81.379 1 137.428 8.57042E-16 137.43 1 99.9635 2.47245E-22 154.08 1 M LAAPAAEEKEEAREKMLAAKSADGSAPAGEG X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP M(1)LAAKSADGSAPAGEGEGVTLQR M(137.43)LAAKSADGSAPAGEGEGVTLQR 1 3 2.5429 2216300000 2216300000 0 0 1.9544 33578000 20800000 34205000 74013000 66864000 29506000 16489000 94319000 0 0.32002 0.34013 0.19991 1.0831 0.58288 0.24583 0.16516 0.44221 0 33578000 0 0 20800000 0 0 34205000 0 0 74013000 0 0 66864000 0 0 29506000 0 0 16489000 0 0 94319000 0 0 0 0 0 706 1133 26 26 965;2931 1089;1091;3328;3330 3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3088;3089;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9449;9450 3222;3223;3224;3225;3226;3227;3228;3229;3230;3231;3232;3244;3245;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9947;9948 9450 9948 20190902_JH_WT_Ubi_2 7795 3069 3224 20190902_JH_EV_Ubi_3 5615 3069 3224 20190902_JH_EV_Ubi_3 5615 sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN 672;664 sp|Q01813|PFKAP_HUMAN sp|Q01813|PFKAP_HUMAN sp|Q01813|PFKAP_HUMAN ATP-dependent 6-phosphofructokinase, platelet type OS=Homo sapiens OX=9606 GN=PFKP PE=1 SV=2;sp|Q01813-2|PFKAP_HUMAN Isoform 2 of ATP-dependent 6-phosphofructokinase, platelet type OS=Homo sapiens OX=9606 GN=PFKP 1 70.4511 0.00502996 70.451 34.059 70.451 1 53.1692 0.0200549 53.169 1 61.2648 0.0110788 61.265 1 70.4511 0.00502996 70.451 1 M EGKGVFDCRKNVLGHMQQGGAPSPFDRNFGT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPXXXX NVLGHM(1)QQGGAPSPFDR NVLGHM(70.45)QQGGAPSPFDR 6 3 -0.5869 25362000 25362000 0 0 13.082 0 0 5856500 0 0 0 0 9026800 10478000 NaN NaN NaN NaN NaN NaN NaN 4.6562 NaN 0 0 0 0 0 0 5856500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9026800 0 0 10478000 0 0 707 1136 672 672 3253 3716 10444;10445;10446 10988;10989;10990 10446 10990 20190902_JH_WT_Ubi_3 7514 10446 10990 20190902_JH_WT_Ubi_3 7514 10446 10990 20190902_JH_WT_Ubi_3 7514 sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN 425;417 sp|Q01813|PFKAP_HUMAN sp|Q01813|PFKAP_HUMAN sp|Q01813|PFKAP_HUMAN ATP-dependent 6-phosphofructokinase, platelet type OS=Homo sapiens OX=9606 GN=PFKP PE=1 SV=2;sp|Q01813-2|PFKAP_HUMAN Isoform 2 of ATP-dependent 6-phosphofructokinase, platelet type OS=Homo sapiens OX=9606 GN=PFKP 1 142.975 2.00733E-36 171.25 112.53 142.97 1 42.3884 2.00733E-36 171.25 1 148.063 7.07071E-22 148.06 1 126.252 2.32804E-11 126.25 1 63.9361 0.00253008 63.936 1 69.7632 0.00143199 69.763 1 115.742 1.26474E-08 115.74 1 142.975 3.90569E-16 142.97 1 M NCNVAVINVGAPAAGMNAAVRSAVRVGIADG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX TNCNVAVINVGAPAAGM(1)NAAVR TNCNVAVINVGAPAAGM(142.97)NAAVR 17 3 -0.27483 37592000 37592000 0 0 NaN 6258100 3060500 0 4886900 3573000 4431200 3917100 0 11465000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 6258100 0 0 3060500 0 0 0 0 0 4886900 0 0 3573000 0 0 4431200 0 0 3917100 0 0 0 0 0 11465000 0 0 708 1136 425 425 4523 5137 14423;14424;14425;14426;14427;14428;14429;14430 15162;15163;15164;15165;15166;15167;15168;15169 14430 15169 20190902_JH_WT_Ubi_3 10092 14423 15162 20190821_JH_EV_Ubi 8859 14423 15162 20190821_JH_EV_Ubi 8859 sp|Q02252-2|MMSA_HUMAN;sp|Q02252|MMSA_HUMAN 468;481 sp|Q02252-2|MMSA_HUMAN sp|Q02252-2|MMSA_HUMAN sp|Q02252-2|MMSA_HUMAN Isoform 2 of Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens OX=9606 GN=ALDH6A1;sp|Q02252|MMSA_HUMAN Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens OX=9606 GN 1 51.7827 0.00190972 51.783 22.313 51.783 1 51.7827 0.00190972 51.783 1 M VGQVGVNVPIPVPLPMFSFTGSRSSFRGDTN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX YAHLVDVGQVGVNVPIPVPLPM(1)FSFTGSR YAHLVDVGQVGVNVPIPVPLPM(51.78)FSFTGSR 22 3 1.2389 5876000 5876000 0 0 NaN 0 5876000 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 5876000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 709 1140 468 468 5100 5796 16448 17285 16448 17285 20190821_JH_MUT_Ubi 14462 16448 17285 20190821_JH_MUT_Ubi 14462 16448 17285 20190821_JH_MUT_Ubi 14462 sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN 248;274 sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN Isoform 2 of Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1;sp|Q02750|MP2K1_HUMAN Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1 PE=1 SV=2 1 78.5008 0.000990504 78.501 43.009 78.501 1 78.5008 0.000990504 78.501 1 M GRYPIPPPDAKELELMFGCQVEGDAAETPPR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP ELELM(1)FGCQVEGDAAETPPRPR ELELM(78.5)FGCQVEGDAAETPPRPR 5 3 0.16304 1898400 1898400 0 0 NaN 0 0 0 0 0 0 0 1898400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1898400 0 0 0 0 0 710 1141 248 248 985 1113 3152 3311 3152 3311 20190902_JH_WT_Ubi_2 11452 3152 3311 20190902_JH_WT_Ubi_2 11452 3152 3311 20190902_JH_WT_Ubi_2 11452 sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN 223;249 sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN Isoform 2 of Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1;sp|Q02750|MP2K1_HUMAN Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1 PE=1 SV=2 1 56.3033 0.00298406 56.303 24.703 56.303 1 56.3033 0.00298406 56.303 2 M RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX LQGTHYSVQSDIWSM(1)GLSLVEM(1)AVGR LQGTHYSVQSDIWSM(56.3)GLSLVEM(56.3)AVGR 15 3 -0.20477 2170900 0 2170900 0 NaN 0 0 0 0 0 0 0 2170900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2170900 0 0 0 0 711 1141 223 223 2779 3155 8990 9460 8990 9460 20190902_JH_WT_Ubi_2 16055 8990 9460 20190902_JH_WT_Ubi_2 16055 8990 9460 20190902_JH_WT_Ubi_2 16055 sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN 230;256 sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN sp|Q02750-2|MP2K1_HUMAN Isoform 2 of Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1;sp|Q02750|MP2K1_HUMAN Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP2K1 PE=1 SV=2 1 56.3033 0.00298406 56.303 24.703 56.303 1 56.3033 0.00298406 56.303 2 M SVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX LQGTHYSVQSDIWSM(1)GLSLVEM(1)AVGR LQGTHYSVQSDIWSM(56.3)GLSLVEM(56.3)AVGR 22 3 -0.20477 2170900 0 2170900 0 NaN 0 0 0 0 0 0 0 2170900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2170900 0 0 0 0 712 1141 230 230 2779 3155 8990 9460 8990 9460 20190902_JH_WT_Ubi_2 16055 8990 9460 20190902_JH_WT_Ubi_2 16055 8990 9460 20190902_JH_WT_Ubi_2 16055 sp|Q02790|FKBP4_HUMAN 20 sp|Q02790|FKBP4_HUMAN sp|Q02790|FKBP4_HUMAN sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens OX=9606 GN=FKBP4 PE=1 SV=3 1 94.072 2.41411E-85 213.2 159.92 94.072 1 113.623 1.09878E-15 113.62 1 213.198 2.41411E-85 213.2 1 165.65 1.08443E-39 165.65 1 124.846 1.74493E-20 124.85 1 111.563 6.2778E-32 155.61 1 94.072 1.21481E-49 180.68 1 156.017 5.54216E-32 156.02 1 162.203 1.77487E-39 162.2 1 152.499 1.18876E-31 152.5 1 M EMKATESGAQSAPLPMEGVDISPKQDEGVLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;X;X;X;X;GlyGly (K) XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP ATESGAQSAPLPM(1)EGVDISPKQDEGVLK ATESGAQSAPLPM(94.07)EGVDISPKQDEGVLK 13 3 1.6125 114330000 114330000 0 0 3.9547 22299000 7541300 8788500 11360000 9162000 15081000 17436000 11389000 10261000 4.7975 1.2473 1.2649 6.4808 7.5312 5.8014 3.0592 NaN NaN 22299000 0 0 7541300 0 0 8788500 0 0 11360000 0 0 9162000 0 0 15081000 0 0 17436000 0 0 11389000 0 0 10261000 0 0 713 1142 20 20 299 350;352 1001;1002;1003;1004;1005;1006;1007;1008;1009;1017;1018 1084;1085;1086;1087;1088;1089;1090;1091;1092;1101;1102 1018 1102 20190902_JH_MUT_Ubi_2 9823 1004 1087 20190821_JH_MUT_Ubi 8235 1004 1087 20190821_JH_MUT_Ubi 8235 sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN 76;127 sp|Q02978-2|M2OM_HUMAN sp|Q02978-2|M2OM_HUMAN sp|Q02978-2|M2OM_HUMAN Isoform 2 of Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens OX=9606 GN=SLC25A11;sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens OX=9606 GN=SLC25A11 PE=1 SV=3 1 50.9237 0.00827019 50.924 27.35 50.924 1 50.9237 0.00827019 50.924 1 M ADGTPPGFLLKAVIGMTAGATGAFVGTPAEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP AVIGM(1)TAGATGAFVGTPAEVALIR AVIGM(50.92)TAGATGAFVGTPAEVALIR 5 3 -0.99026 1200600 1200600 0 0 1.2952 0 0 0 1200600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1200600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 714 1145 76 76 326 383 1094 1181 1094 1181 20190902_JH_EV_Ubi_2 11770 1094 1181 20190902_JH_EV_Ubi_2 11770 1094 1181 20190902_JH_EV_Ubi_2 11770 sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN 252;303 sp|Q02978-2|M2OM_HUMAN sp|Q02978-2|M2OM_HUMAN sp|Q02978-2|M2OM_HUMAN Isoform 2 of Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens OX=9606 GN=SLC25A11;sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens OX=9606 GN=SLC25A11 PE=1 SV=3 1 64.0395 7.05155E-05 109.07 71.045 64.04 1 109.073 7.05155E-05 109.07 1 85.1626 0.00113942 85.163 1 72.6151 0.00388204 72.615 1 64.0395 0.00843113 64.04 1 M RLGPHTVLTFIFLEQMNKAYKRLFLSG____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX LGPHTVLTFIFLEQM(1)NK LGPHTVLTFIFLEQM(64.04)NK 15 3 -0.56387 12926000 12926000 0 0 NaN 1334500 0 5450200 0 0 0 0 2098300 4043000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1334500 0 0 0 0 0 5450200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2098300 0 0 4043000 0 0 715 1145 252 252 2625 2983 8516;8517;8518;8519 8957;8958;8959;8960 8519 8960 20190902_JH_WT_Ubi_3 13952 8516 8957 20190821_JH_EV_Ubi 13116 8516 8957 20190821_JH_EV_Ubi 13116 sp|Q03135|CAV1_HUMAN 32 sp|Q03135|CAV1_HUMAN sp|Q03135|CAV1_HUMAN sp|Q03135|CAV1_HUMAN Caveolin-1 OS=Homo sapiens OX=9606 GN=CAV1 PE=1 SV=4 1 104.837 5.88221E-36 171.47 122.39 104.84 1 135.018 8.78339E-09 135.02 1 69.4222 5.47349E-07 121.51 1 64.2595 0.000131857 104.78 1 102.59 1.12982E-06 122.52 1 109.77 2.12122E-07 109.77 1 133.208 1.51264E-11 144.73 1 127.777 0.000116674 127.78 1 97.7759 5.88221E-36 171.47 1 104.837 8.86181E-14 152.25 1 M PIREQGNIYKPNNKAMADELSEKQVYDAHTK X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;GlyGly (K);X;Deamidation (NQ);Deamidation (NQ);GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP PNNKAM(1)ADELSEKQVYDAHTK PNNKAM(104.84)ADELSEKQVYDAHTK 6 4 0.59234 3260800000 3260800000 0 0 2.0414 3418400 0 5280600 125780000 630420 8595200 52349000 0 0 0.017926 0 0.087494 1.7473 0.002625 0.056896 0.45538 0 0 3418400 0 0 0 0 0 5280600 0 0 125780000 0 0 630420 0 0 8595200 0 0 52349000 0 0 0 0 0 0 0 0 716 1147 32 32 225;1070;3480;3481 257;259;1203;1205;1206;1207;3969;3971;3972 748;749;750;751;752;753;754;755;764;765;766;767;768;769;3391;3392;3393;3394;3395;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;11175;11176;11177;11178;11179;11180;11189;11190;11191;11192;11193;11194;11195;11196;11197;11198;11199;11200;11201;11202 817;818;819;820;821;822;823;824;825;834;835;836;837;838;839;3566;3567;3568;3569;3570;3571;3581;3582;3583;3584;3585;3586;3587;3588;3589;3590;3591;3592;11742;11743;11744;11745;11746;11747;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770 11202 11770 20190902_JH_WT_Ubi_3 5782 11200 11768 20190902_JH_WT_Ubi_2 5952 11200 11768 20190902_JH_WT_Ubi_2 5952 sp|Q03135-2|CAV1_HUMAN 1 sp|Q03135-2|CAV1_HUMAN sp|Q03135-2|CAV1_HUMAN sp|Q03135-2|CAV1_HUMAN Isoform 2 of Caveolin-1 OS=Homo sapiens OX=9606 GN=CAV1 1 131.397 1.45561E-13 153.22 111.53 131.4 1 143.578 2.53395E-10 143.58 1 94.532 0.000630952 94.532 1 147.753 2.81262E-13 147.75 1 44.2941 6.72161E-10 137.73 1 131.397 5.35523E-10 139.64 1 141.851 3.76924E-10 141.85 1 119.867 9.48961E-06 119.87 1 121.923 3.69707E-06 121.92 1 153.223 1.45561E-13 153.22 1 M _______________MADELSEKQVYDAHTK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;X;X;X;X;X;GlyGly (K) XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ADELSEKQVYDAHTK M(131.4)ADELSEKQVYDAHTK 1 3 3.9026 410510000 410510000 0 0 4.3886 67366000 3930600 0 141450000 108030000 8042000 6770900 39790000 0 3.7938 0.75011 0 10.079 5.9452 0.7491 0.98952 6.3203 0 67366000 0 0 3930600 0 0 0 0 0 141450000 0 0 108030000 0 0 8042000 0 0 6770900 0 0 39790000 0 0 0 0 0 717 1148 1 1 2875 3260;3263 9249;9250;9251;9252;9253;9254;9255;9256;9257;9258;9274 9734;9735;9736;9737;9738;9739;9740;9741;9742;9743;9760 9274 9760 20190902_JH_EV_Ubi_3 5251 9258 9743 20190902_JH_WT_Ubi_3 6099 9258 9743 20190902_JH_WT_Ubi_3 6099 sp|Q03169|TNAP2_HUMAN 638 sp|Q03169|TNAP2_HUMAN sp|Q03169|TNAP2_HUMAN sp|Q03169|TNAP2_HUMAN Tumor necrosis factor alpha-induced protein 2 OS=Homo sapiens OX=9606 GN=TNFAIP2 PE=2 SV=2 1 61.0872 0.011985 61.087 24.231 61.087 1 61.0872 0.011985 61.087 1 M SNSEVKRIRSILDVSMGAQEPSRPLFSLIKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP SILDVSM(1)GAQEPSRPLFSLIKVG SILDVSM(61.09)GAQEPSRPLFSLIKVG 7 3 -1.8912 1703700 1703700 0 0 NaN 0 0 1703700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1703700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 718 1149 638 638 3968 4513 12586 13202 12586 13202 20190821_JH_WT_Ubi 13326 12586 13202 20190821_JH_WT_Ubi 13326 12586 13202 20190821_JH_WT_Ubi 13326 sp|Q03252|LMNB2_HUMAN 528 sp|Q03252|LMNB2_HUMAN sp|Q03252|LMNB2_HUMAN sp|Q03252|LMNB2_HUMAN Lamin-B2 OS=Homo sapiens OX=9606 GN=LMNB2 PE=1 SV=4 1 52.7694 0.00552187 52.769 29.133 52.769 1 52.7694 0.00552187 52.769 1 M IAYKFTPKYILRAGQMVTVWAAGAGVAHSPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP AGQM(1)VTVWAAGAGVAHSPPSTLVWK AGQM(52.77)VTVWAAGAGVAHSPPSTLVWK 4 3 -2.4394 2694600 2694600 0 0 NaN 0 0 2694600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2694600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 719 1150 528 528 135 153 463 511 463 511 20190821_JH_WT_Ubi 10795 463 511 20190821_JH_WT_Ubi 10795 463 511 20190821_JH_WT_Ubi 10795 sp|Q04446|GLGB_HUMAN 5 sp|Q04446|GLGB_HUMAN sp|Q04446|GLGB_HUMAN sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens OX=9606 GN=GBE1 PE=1 SV=3 1 53.262 0.0316875 53.262 27.987 53.262 1 53.262 0.0316875 53.262 1 M ___________MAAPMTPAARPEDYEAALNA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP AAPM(1)TPAARPEDYEAALNAALADVPELAR AAPM(53.26)TPAARPEDYEAALNAALADVPELAR 4 3 2.2155 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 720 1153 5 5 33 39 124 139 124 139 20190902_JH_WT_Ubi_2 16393 124 139 20190902_JH_WT_Ubi_2 16393 124 139 20190902_JH_WT_Ubi_2 16393 sp|Q04828|AK1C1_HUMAN;sp|P52895|AK1C2_HUMAN;sp|P52895-2|AK1C2_HUMAN 16;16;16 sp|Q04828|AK1C1_HUMAN sp|Q04828|AK1C1_HUMAN sp|Q04828|AK1C1_HUMAN Aldo-keto reductase family 1 member C1 OS=Homo sapiens OX=9606 GN=AKR1C1 PE=1 SV=1;sp|P52895|AK1C2_HUMAN Aldo-keto reductase family 1 member C2 OS=Homo sapiens OX=9606 GN=AKR1C2 PE=1 SV=3;sp|P52895-2|AK1C2_HUMAN Isoform 2 of Aldo-keto 1 112.582 9.32067E-17 146.13 112.47 112.58 1 146.128 9.32067E-17 146.13 1 122.157 1.74853E-09 122.16 1 70.9858 0.0012016 70.986 1 109.221 1.90873E-07 109.22 1 68.1894 0.00172857 68.189 1 112.144 1.87612E-08 112.14 1 112.582 1.80161E-08 112.58 1 M MDSKYQCVKLNDGHFMPVLGFGTYAPAEVPK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP LNDGHFM(1)PVLGFGTYAPAEVPK LNDGHFM(112.58)PVLGFGTYAPAEVPK 7 3 -1.0282 25306000 25306000 0 0 NaN 0 0 6109400 1788300 1041000 1730600 1392000 5388300 7856800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6109400 0 0 1788300 0 0 1041000 0 0 1730600 0 0 1392000 0 0 5388300 0 0 7856800 0 0 721 1157 16 16 2725 3098 8839;8840;8841;8842;8843;8844;8845 9297;9298;9299;9300;9301;9302;9303 8845 9303 20190902_JH_WT_Ubi_3 12542 8843 9301 20190821_JH_WT_Ubi 11381 8843 9301 20190821_JH_WT_Ubi 11381 sp|Q05639|EF1A2_HUMAN 201 sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 OS=Homo sapiens OX=9606 GN=EEF1A2 PE=1 SV=1 1 57.803 0.000388469 57.803 35.149 57.803 1 57.803 0.000388469 57.803 2 M ATVPFVPISGWHGDNMLEPSPNMPWFKGWKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX IGYNPATVPFVPISGWHGDNM(1)LEPSPNM(1)PWFK IGYNPATVPFVPISGWHGDNM(57.8)LEPSPNM(57.8)PWFK 21 3 0.20694 1966200 0 1966200 0 NaN 0 0 0 0 0 0 1966200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1966200 0 0 0 0 0 0 0 722 1160 201 201 2134 2435 7080 7453 7080 7453 20190902_JH_MUT_Ubi_3 13296 7080 7453 20190902_JH_MUT_Ubi_3 13296 7080 7453 20190902_JH_MUT_Ubi_3 13296 sp|Q05639|EF1A2_HUMAN 208 sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 OS=Homo sapiens OX=9606 GN=EEF1A2 PE=1 SV=1 1 57.803 0.000388469 57.803 35.149 57.803 1 57.803 0.000388469 57.803 2 M ISGWHGDNMLEPSPNMPWFKGWKVERKEGNA X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX IGYNPATVPFVPISGWHGDNM(1)LEPSPNM(1)PWFK IGYNPATVPFVPISGWHGDNM(57.8)LEPSPNM(57.8)PWFK 28 3 0.20694 1966200 0 1966200 0 NaN 0 0 0 0 0 0 1966200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1966200 0 0 0 0 0 0 0 723 1160 208 208 2134 2435 7080 7453 7080 7453 20190902_JH_MUT_Ubi_3 13296 7080 7453 20190902_JH_MUT_Ubi_3 13296 7080 7453 20190902_JH_MUT_Ubi_3 13296 sp|Q05639|EF1A2_HUMAN 276 sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 OS=Homo sapiens OX=9606 GN=EEF1A2 PE=1 SV=1 1 101.747 1.01926E-11 123.36 90.369 101.75 1 113.589 5.39741E-09 113.59 1 103.28 2.34969E-07 103.28 1 99.9234 3.31773E-07 99.923 1 123.363 1.01926E-11 123.36 1 120.325 1.60902E-09 120.33 1 101.747 2.79185E-07 101.75 1 M TVPVGRVETGILRPGMVVTFAPVNITTEVKS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPX VETGILRPGM(1)VVTFAPVNITTEVK VETGILRPGM(101.75)VVTFAPVNITTEVK 10 3 -0.60375 61096000 61096000 0 0 1.277 17269000 11921000 0 4247200 4204900 10188000 13266000 0 0 1.5315 0.60336 NaN NaN 3.4286 1.3936 1.6034 NaN NaN 17269000 0 0 11921000 0 0 0 0 0 4247200 0 0 4204900 0 0 10188000 0 0 13266000 0 0 0 0 0 0 0 0 724 1160 276 276 4803 5448 15402;15403;15404;15405;15406;15407 16176;16177;16178;16179;16180;16181;16182 15407 16182 20190902_JH_MUT_Ubi_3 11911 15404 16178 20190902_JH_EV_Ubi_3 11392 15404 16178 20190902_JH_EV_Ubi_3 11392 sp|Q06124-3|PTN11_HUMAN;sp|Q06124-2|PTN11_HUMAN;sp|Q06124|PTN11_HUMAN 82;82;82 sp|Q06124-3|PTN11_HUMAN sp|Q06124-3|PTN11_HUMAN sp|Q06124-3|PTN11_HUMAN Isoform 3 of Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens OX=9606 GN=PTPN11;sp|Q06124-2|PTN11_HUMAN Isoform 2 of Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens OX=9606 GN=PTPN11;sp|Q06124|PTN1 1 58.8239 0.000701324 78.902 51.776 58.824 1 69.4309 0.00261455 69.431 1 78.9018 0.000701324 78.902 1 57.7875 0.00867284 57.788 1 69.4309 0.00261455 69.431 1 58.8239 0.00786875 58.824 1 M GGEKFATLAELVQYYMEHHGQLKEKNGDVIE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPXXXXXXXX FATLAELVQYYM(1)EHHGQLK FATLAELVQYYM(58.82)EHHGQLK 12 4 0.86608 48189000 48189000 0 0 11.862 0 2231900 10626000 0 0 3455300 0 26597000 5278600 NaN NaN 2.6157 NaN NaN NaN NaN NaN NaN 0 0 0 2231900 0 0 10626000 0 0 0 0 0 0 0 0 3455300 0 0 0 0 0 26597000 0 0 5278600 0 0 725 1163 82 82 1170 1321 3722;3723;3724;3725;3726 3918;3919;3920;3921;3922 3726 3922 20190902_JH_WT_Ubi_3 13513 3724 3920 20190821_JH_WT_Ubi 12571 3724 3920 20190821_JH_WT_Ubi 12571 sp|Q06136|KDSR_HUMAN 202 sp|Q06136|KDSR_HUMAN sp|Q06136|KDSR_HUMAN sp|Q06136|KDSR_HUMAN 3-ketodihydrosphingosine reductase OS=Homo sapiens OX=9606 GN=KDSR PE=1 SV=1 1 72.8477 0.0196937 72.848 39.657 72.848 1 68.5357 0.0196937 68.536 1 72.8477 0.020377 72.848 M SASKFAIRGLAEALQMEVKPYNVYITVAYPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX GLAEALQM(1)EVK GLAEALQM(72.85)EVK 8 2 0.72947 3754000 3754000 0 0 NaN 0 1226500 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1226500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 726 1164 202 202 1571 1789;1791 5036;5038 5302;5304 5038 5304 20190902_JH_WT_Ubi_3 11159 5038 5304 20190902_JH_WT_Ubi_3 11159 5036 5302 20190821_JH_MUT_Ubi 9283 sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN 504;677;689;733;743;745 sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN Isoform 5 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-4|APLP2_HUMAN Isoform 4 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-2|APLP2_HUMAN Isoform 2 of Amyloid-like protein 2 OS=Homo sa 1 83.4044 3.64861E-09 127.2 98.33 83.404 1 52.5991 0.0192505 52.599 1 100.773 4.47448E-05 100.77 1 89.5016 0.000147863 89.502 1 50.1018 0.0346465 50.102 1 46.6804 0.027624 46.68 1 98.5518 5.76844E-05 98.552 1 127.199 3.64861E-09 127.2 1 116.04 1.54863E-06 116.04 1 83.4044 0.000357513 83.404 1;2 M EVDPMLTPEERHLNKMQNHGYENPTYKYLEQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP M(1)QNHGYENPTYKYLEQM(1)QI M(83.4)QNHGYENPTYKYLEQM(83.4)QI 1 3 1.1696 56885000 40231000 16654000 0 35.421 2709100 4155300 13593000 0 3716600 8060500 2128400 16142000 3701700 NaN NaN 8.4641 NaN NaN NaN NaN NaN NaN 2709100 0 0 2671700 1483600 0 10494000 3099600 0 0 0 0 3716600 0 0 5216100 2844400 0 0 2128400 0 12746000 3396900 0 0 3701700 0 727 1168 504 504 1921;2961 2184;2185;3372;3373 6227;6228;6229;6230;6231;6232;6233;6234;9547;9548;9549;9550;9551;9552;9554 6553;6554;6555;6556;6557;6558;6559;6560;10048;10049;10050;10051;10052;10053;10054;10056 9552 10054 20190902_JH_WT_Ubi_3 9718 9549 10050 20190902_JH_MUT_Ubi_3 8535 9549 10050 20190902_JH_MUT_Ubi_3 8535 sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN 296;469;469;525;535;525 sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN Isoform 5 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-4|APLP2_HUMAN Isoform 4 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-2|APLP2_HUMAN Isoform 2 of Amyloid-like protein 2 OS=Homo sa 1 53.7773 0.0243856 53.777 14.429 53.777 1 53.7773 0.0243856 53.777 1 M HYQHVLAVDPEKAAQMKSQVMTHLHVIEERR X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX HYQHVLAVDPEKAAQM(1)K HYQHVLAVDPEKAAQM(53.78)K 16 3 3.0529 806750 806750 0 0 NaN 0 0 0 0 0 0 0 806750 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 806750 0 0 0 0 0 728 1168 296 296 2051 2346 6819 7176 6819 7176 20190902_JH_WT_Ubi_2 6634 6819 7176 20190902_JH_WT_Ubi_2 6634 6819 7176 20190902_JH_WT_Ubi_2 6634 sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN 520;693;705;749;759;761 sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN sp|Q06481-5|APLP2_HUMAN Isoform 5 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-4|APLP2_HUMAN Isoform 4 of Amyloid-like protein 2 OS=Homo sapiens OX=9606 GN=APLP2;sp|Q06481-2|APLP2_HUMAN Isoform 2 of Amyloid-like protein 2 OS=Homo sa 1 83.4044 3.64861E-09 127.2 98.33 83.404 1 100.773 4.47448E-05 100.77 1 89.5016 0.000147863 89.502 1 98.5518 5.76844E-05 98.552 1 127.199 3.64861E-09 127.2 1 116.04 1.54863E-06 116.04 1 83.4044 0.000357513 83.404 1;2 M QNHGYENPTYKYLEQMQI_____________ X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX M(1)QNHGYENPTYKYLEQM(1)QI M(83.4)QNHGYENPTYKYLEQM(83.4)QI 17 3 1.1696 17799000 1144700 16654000 0 11.083 0 1483600 3099600 0 0 3989100 2128400 3396900 3701700 NaN NaN 1.93 NaN NaN NaN NaN NaN NaN 0 0 0 0 1483600 0 0 3099600 0 0 0 0 0 0 0 1144700 2844400 0 0 2128400 0 0 3396900 0 0 3701700 0 729 1168 520 520 2961 3372;3373 9547;9548;9549;9550;9551;9552;9553 10048;10049;10050;10051;10052;10053;10054;10055 9552 10054 20190902_JH_WT_Ubi_3 9718 9549 10050 20190902_JH_MUT_Ubi_3 8535 9549 10050 20190902_JH_MUT_Ubi_3 8535 sp|Q07666-3|KHDR1_HUMAN;sp|Q07666|KHDR1_HUMAN;sp|Q07666-2|KHDR1_HUMAN 21;21;21 sp|Q07666-3|KHDR1_HUMAN sp|Q07666-3|KHDR1_HUMAN sp|Q07666-3|KHDR1_HUMAN Isoform 3 of KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens OX=9606 GN=KHDRBS1;sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sa 1 70.6216 0.0102722 71.558 49.53 70.622 1 71.5575 0.0102722 71.558 1 62.0418 0.0191292 62.042 1 70.6216 0.0110865 70.622 1 M DPAARMSRSSGRSGSMDPSGAHPSVRQTPSR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX SGSM(1)DPSGAHPSVR SGSM(70.62)DPSGAHPSVR 4 3 0.87844 9452000 9452000 0 0 NaN 0 0 3104200 0 0 0 0 3546300 2801500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3104200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3546300 0 0 2801500 0 0 730 1175 21 21 3936 4474 12486;12487;12488 13099;13100;13101 12488 13101 20190902_JH_WT_Ubi_3 4268 12486 13099 20190821_JH_WT_Ubi 3227 12486 13099 20190821_JH_WT_Ubi 3227 sp|Q07812-5|BAX_HUMAN;sp|Q07812-8|BAX_HUMAN;sp|Q07812|BAX_HUMAN;sp|Q07812-2|BAX_HUMAN 20;20;20;20 sp|Q07812-5|BAX_HUMAN sp|Q07812-5|BAX_HUMAN sp|Q07812-5|BAX_HUMAN Isoform Epsilon of Apoptosis regulator BAX OS=Homo sapiens OX=9606 GN=BAX;sp|Q07812-8|BAX_HUMAN Isoform Sigma of Apoptosis regulator BAX OS=Homo sapiens OX=9606 GN=BAX;sp|Q07812|BAX_HUMAN Apoptosis regulator BAX OS=Homo sapiens OX=960 1 55.469 0.00634763 55.469 18.988 55.469 1 55.469 0.00634763 55.469 1 M GEQPRGGGPTSSEQIMKTGALLLQGFIQDRA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPX GGGPTSSEQIM(1)KTGALLLQGFIQDR GGGPTSSEQIM(55.47)KTGALLLQGFIQDR 11 3 -0.97798 529670 529670 0 0 NaN 0 529670 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 529670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 731 1176 20 20 1486 1695 4748 4993 4748 4993 20190821_JH_MUT_Ubi 12792 4748 4993 20190821_JH_MUT_Ubi 12792 4748 4993 20190821_JH_MUT_Ubi 12792 sp|Q07820-2|MCL1_HUMAN;sp|Q07820|MCL1_HUMAN 111;111 sp|Q07820-2|MCL1_HUMAN sp|Q07820-2|MCL1_HUMAN sp|Q07820-2|MCL1_HUMAN Isoform 2 of Induced myeloid leukemia cell differentiation protein Mcl-1 OS=Homo sapiens OX=9606 GN=MCL1;sp|Q07820|MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 OS=Homo sapiens OX=9606 GN=MCL1 PE=1 SV=3 1 68.9298 3.35957E-25 126.5 101.85 68.93 1 78.3432 3.6313E-07 78.343 1 63.7034 4.24679E-05 63.703 1 126.503 3.35957E-25 126.5 1 65.7443 3.50618E-05 65.744 1 93.5289 1.82921E-09 93.529 1 51.8448 0.000325765 51.845 1 51.0658 0.000439967 51.066 1 68.9298 2.05106E-05 72.103 1;2 M LLFFAPTRRAAPLEEMEAPAADAIMSPEEEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP AAPLEEM(1)EAPAADAIM(1)SPEEELDGYEPEPLGKR AAPLEEM(68.93)EAPAADAIM(68.93)SPEEELDGYEPEPLGKR 7 3 0.26415 50717000 8776500 41940000 0 30.851 4898900 9000600 7827300 2344800 0 8404700 5100400 5575800 7564500 NaN NaN NaN NaN NaN 5.1126 NaN NaN NaN 927570 3971300 0 3509600 5491000 0 0 7827300 0 0 2344800 0 0 0 0 2822900 5581800 0 0 5100400 0 0 5575800 0 1516500 6048000 0 732 1177 111 111 32 36;37 110;111;112;113;114;115;116;117;118;119;120;122 120;121;122;123;124;125;126;127;128;129;130;131;132;133;134;135;137 117 129 20190902_JH_WT_Ubi_3 12334 115 127 20190821_JH_WT_Ubi 11068 115 127 20190821_JH_WT_Ubi 11068 sp|Q07820-2|MCL1_HUMAN;sp|Q07820|MCL1_HUMAN 120;120 sp|Q07820-2|MCL1_HUMAN sp|Q07820-2|MCL1_HUMAN sp|Q07820-2|MCL1_HUMAN Isoform 2 of Induced myeloid leukemia cell differentiation protein Mcl-1 OS=Homo sapiens OX=9606 GN=MCL1;sp|Q07820|MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 OS=Homo sapiens OX=9606 GN=MCL1 PE=1 SV=3 1 68.9298 3.35957E-25 126.5 101.85 68.93 1 78.3432 3.6313E-07 78.343 1 63.7034 4.24679E-05 63.703 1 126.503 3.35957E-25 126.5 1 65.7443 3.50618E-05 65.744 1 93.5289 1.82921E-09 93.529 1 51.8448 0.000325765 51.845 1 51.0658 0.000439967 51.066 1 68.9298 2.35019E-05 68.93 1;2 M AAPLEEMEAPAADAIMSPEEELDGYEPEPLG X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP AAPLEEM(1)EAPAADAIM(1)SPEEELDGYEPEPLGKR AAPLEEM(68.93)EAPAADAIM(68.93)SPEEELDGYEPEPLGKR 16 3 0.26415 43586000 1645800 41940000 0 26.513 3971300 5491000 7827300 2344800 0 5581800 6746200 5575800 6048000 NaN NaN NaN NaN NaN 3.3954 NaN NaN NaN 0 3971300 0 0 5491000 0 0 7827300 0 0 2344800 0 0 0 0 0 5581800 0 1645800 5100400 0 0 5575800 0 0 6048000 0 733 1177 120 120 32 36;37 110;111;112;113;114;115;116;117;121 120;121;122;123;124;125;126;127;128;129;130;136 117 129 20190902_JH_WT_Ubi_3 12334 115 127 20190821_JH_WT_Ubi 11068 115 127 20190821_JH_WT_Ubi 11068 sp|Q07837-3|SLC31_HUMAN;sp|Q07837-5|SLC31_HUMAN;sp|Q07837-7|SLC31_HUMAN;sp|Q07837-6|SLC31_HUMAN;sp|Q07837|SLC31_HUMAN 123;123;123;123;123 sp|Q07837-3|SLC31_HUMAN sp|Q07837-3|SLC31_HUMAN sp|Q07837-3|SLC31_HUMAN Isoform C of Neutral and basic amino acid transport protein rBAT OS=Homo sapiens OX=9606 GN=SLC3A1;sp|Q07837-5|SLC31_HUMAN Isoform E of Neutral and basic amino acid transport protein rBAT OS=Homo sapiens OX=9606 GN=SLC3A1;sp|Q07837- 1 45.6957 0.027298 45.696 15.96 45.696 1 45.6957 0.027298 45.696 1 M IALSPKCLDWWQEGPMYQIYPRSFKDSNKDG X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Deamidation (NQ);GlyGly (K);X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPXX CLDWWQEGPM(1)YQIYPRSFKDSNK CLDWWQEGPM(45.7)YQIYPRSFKDSNK 10 3 0.91032 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734 1178 123 123 349 412 1173 1260 1173 1260 20190821_JH_MUT_Ubi 5520 1173 1260 20190821_JH_MUT_Ubi 5520 1173 1260 20190821_JH_MUT_Ubi 5520 sp|Q9H0B6-2|KLC2_HUMAN;sp|Q07866-8|KLC1_HUMAN;sp|Q07866-2|KLC1_HUMAN;sp|Q07866-3|KLC1_HUMAN;sp|Q07866|KLC1_HUMAN;sp|Q07866-7|KLC1_HUMAN;sp|Q07866-5|KLC1_HUMAN;sp|Q07866-10|KLC1_HUMAN;sp|Q9H0B6|KLC2_HUMAN;sp|Q07866-6|KLC1_HUMAN;sp|Q07866-4|KLC1_HUMAN;sp|Q07866-9|KLC1_HUMAN 165;257;257;257;257;257;257;257;242;257;257;257 sp|Q9H0B6-2|KLC2_HUMAN sp|Q9H0B6-2|KLC2_HUMAN sp|Q9H0B6-2|KLC2_HUMAN Isoform 2 of Kinesin light chain 2 OS=Homo sapiens OX=9606 GN=KLC2;sp|Q07866-8|KLC1_HUMAN Isoform S of Kinesin light chain 1 OS=Homo sapiens OX=9606 GN=KLC1;sp|Q07866-2|KLC1_HUMAN Isoform C of Kinesin light chain 1 OS=Homo sapiens OX 1 107.691 4.78958E-07 107.69 81.329 107.69 1 60.0624 0.0048052 60.062 1 68.5672 0.00160376 68.567 1 60.7641 0.00431839 60.764 1 47.7264 0.00536734 59.252 1 59.512 0.0051871 59.512 1 107.691 4.78958E-07 107.69 1 M DLEKTSGHDHPDVATMLNILALVYRDQNKYK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPXXXXXX TSGHDHPDVATM(1)LNILALVYR TSGHDHPDVATM(107.69)LNILALVYR 12 3 1.0585 38556000 38556000 0 0 2.5143 0 3085400 15365000 0 0 4038400 2976200 9685400 0 NaN 1.22 2.2487 NaN NaN 12.351 NaN 1.7156 NaN 0 0 0 3085400 0 0 15365000 0 0 0 0 0 0 0 0 4038400 0 0 2976200 0 0 9685400 0 0 0 0 0 735 1179 165 165 4597 5219 14693;14694;14695;14696;14697;14698;14699 15438;15439;15440;15441;15442;15443;15444 14699 15444 20190902_JH_WT_Ubi_3 13428 14699 15444 20190902_JH_WT_Ubi_3 13428 14699 15444 20190902_JH_WT_Ubi_3 13428 sp|Q07960|RHG01_HUMAN 231 sp|Q07960|RHG01_HUMAN sp|Q07960|RHG01_HUMAN sp|Q07960|RHG01_HUMAN Rho GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=ARHGAP1 PE=1 SV=1 1 48.1464 0.000292482 74.703 50.637 48.146 1 45.3954 0.0150339 45.395 1 56.7083 0.00449824 56.708 1 74.7035 0.000292482 74.703 1 54.2226 0.00560174 54.223 1 58.3663 0.00376216 58.366 1 44.8633 0.015765 44.863 1 48.1464 0.0112544 48.146 1 M FLKSTQKSPATAPKPMPPRPPLPNQQFGVSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP PM(1)PPRPPLPNQQFGVSLQHLQEK PM(48.15)PPRPPLPNQQFGVSLQHLQEK 2 4 0.85434 68695000 68695000 0 0 NaN 14424000 4378400 16155000 7625900 10167000 5858900 0 0 10086000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 14424000 0 0 4378400 0 0 16155000 0 0 7625900 0 0 10167000 0 0 5858900 0 0 0 0 0 0 0 0 10086000 0 0 736 1180 231 231 3466 3953 11124;11125;11126;11127;11128;11129;11130 11689;11690;11691;11692;11693;11694;11695 11130 11695 20190902_JH_WT_Ubi_3 10173 11129 11694 20190821_JH_WT_Ubi 8526 11129 11694 20190821_JH_WT_Ubi 8526 sp|Q07960|RHG01_HUMAN 299 sp|Q07960|RHG01_HUMAN sp|Q07960|RHG01_HUMAN sp|Q07960|RHG01_HUMAN Rho GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=ARHGAP1 PE=1 SV=1 1 57.2484 0.00582959 57.248 30.469 57.248 1 42.1722 0.0266429 42.172 1 57.2484 0.00582959 57.248 1 M SANTQVVREVQQKYNMGLPVDFDQYNELHLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP YNM(1)GLPVDFDQYNELHLPAVILK YNM(57.25)GLPVDFDQYNELHLPAVILK 3 3 0.91036 3206800 3206800 0 0 NaN 0 1367500 1839300 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1367500 0 0 1839300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 737 1180 299 299 5184 5900 16727;16728 17584;17585 16728 17585 20190821_JH_WT_Ubi 14518 16728 17585 20190821_JH_WT_Ubi 14518 16728 17585 20190821_JH_WT_Ubi 14518 sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN 942;942 sp|Q08174|PCDH1_HUMAN sp|Q08174|PCDH1_HUMAN sp|Q08174|PCDH1_HUMAN Protocadherin-1 OS=Homo sapiens OX=9606 GN=PCDH1 PE=1 SV=2;sp|Q08174-2|PCDH1_HUMAN Isoform 2 of Protocadherin-1 OS=Homo sapiens OX=9606 GN=PCDH1 1 71.7807 9.864E-05 110.38 81.751 71.781 1 57.1973 0.0261576 57.197 1 63.3098 0.0156639 63.31 1 60.246 0.0209188 60.246 1 95.7553 0.000989606 95.755 1 83.4175 0.00283682 83.418 1 63.1452 0.015937 63.145 1 110.384 9.864E-05 110.38 1 101.009 0.000545501 101.01 1 71.7807 0.0080358 71.781 1 M DEDEAGLQKSLKFNLMSDAPGDSPRIHLPLN X;X;X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX SLKFNLM(1)SDAPGDSPR SLKFNLM(71.78)SDAPGDSPR 7 3 -0.43606 19108000 19108000 0 0 NaN 1333700 957600 2704800 1832400 1139200 1313600 2020700 3815400 3990200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1333700 0 0 957600 0 0 2704800 0 0 1832400 0 0 1139200 0 0 1313600 0 0 2020700 0 0 3815400 0 0 3990200 0 0 738 1181 942 942 4025 4571 12741;12742;12743;12744;12745;12746;12747;12748;12749 13364;13365;13366;13367;13368;13369;13370;13371;13372 12749 13372 20190902_JH_WT_Ubi_3 8688 12746 13369 20190902_JH_MUT_Ubi_3 7515 12746 13369 20190902_JH_MUT_Ubi_3 7515 sp|Q08211|DHX9_HUMAN;sp|Q08211-2|DHX9_HUMAN 1059;24 sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4;sp|Q08211-2|DHX9_HUMAN Isoform 2 of ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 1 230.67 1.12387E-66 230.67 209.32 230.67 1 230.67 1.12387E-66 230.67 1 M VFGEKIRTRAISAKGMTLVTPLQLLLFASKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX GM(1)TLVTPLQLLLFASK GM(230.67)TLVTPLQLLLFASK 2 3 0.215 3843000 3843000 0 0 NaN 0 0 3843000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3843000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 739 1182 1059 1059 1628 1854 5210 5485 5210 5485 20190821_JH_WT_Ubi 16070 5210 5485 20190821_JH_WT_Ubi 16070 5210 5485 20190821_JH_WT_Ubi 16070 sp|Q08211|DHX9_HUMAN 672 sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4 1 63.4729 0.000655889 116.54 85.988 63.473 1 99.4999 0.00308254 99.5 1 89.3005 0.00601461 89.301 1 116.539 0.000655889 116.54 1 75.7391 0.0122739 75.739 1 57.8855 0.0266417 57.885 1 63.4729 0.0196623 63.473 1 M LPGWNLIYTMQKHLEMNPHFGSHRYQILPLH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPXXXXXXX HLEM(1)NPHFGSHR HLEM(63.47)NPHFGSHR 4 4 0.042132 96173000 96173000 0 0 2.6253 3073700 0 4428800 3751500 4531700 0 0 0 0 NaN NaN 0.79775 NaN NaN NaN NaN 0 0 3073700 0 0 0 0 0 4428800 0 0 3751500 0 0 4531700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 740 1182 672 672 1897 2158 6139;6140;6141;6142;6143;6144 6463;6464;6465;6466;6467;6468 6144 6468 20190902_JH_WT_Ubi_3 4013 6140 6464 20190902_JH_EV_Ubi_2 3573 6140 6464 20190902_JH_EV_Ubi_2 3573 sp|Q08211|DHX9_HUMAN 487 sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4 1 127.715 1.44486E-15 166.48 109.91 127.71 1 73.91 0.0110009 73.91 1 166.476 1.44486E-15 166.48 1 107.927 0.000298318 107.93 1 127.715 8.46614E-06 127.71 1 M SVRFESILPRPHASIMFCTVGVLLRKLEAGI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPXXXXXX PHASIM(1)FCTVGVLLR PHASIM(127.71)FCTVGVLLR 6 3 0.54061 31671000 31671000 0 0 2.081 0 0 19922000 0 0 0 0 5002400 6746600 NaN 0 1.4556 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 19922000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5002400 0 0 6746600 0 0 741 1182 487 487 3374 3853 10809;10810;10811;10812 11372;11373;11374;11375 10812 11375 20190902_JH_WT_Ubi_3 11623 10810 11373 20190821_JH_WT_Ubi 10273 10810 11373 20190821_JH_WT_Ubi 10273 sp|Q08211|DHX9_HUMAN 1036 sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4 1 57.3899 0.0143048 57.39 35.549 57.39 1 57.3899 0.0143048 57.39 1 M LIHKSSVNCPFSSQDMKYPSPFFVFGEKIRT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPXXX SSVNCPFSSQDM(1)KYPSPFFVFGEK SSVNCPFSSQDM(57.39)KYPSPFFVFGEK 12 3 0.22852 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 742 1182 1036 1036 4177 4745 13227 13870 13227 13870 20190821_JH_MUT_Ubi 11891 13227 13870 20190821_JH_MUT_Ubi 11891 13227 13870 20190821_JH_MUT_Ubi 11891 sp|Q09666|AHNK_HUMAN 887 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 85.1462 0.000586175 85.146 24.672 85.146 1 60.0343 0.0122549 60.034 1 63.4596 0.00769397 63.46 1 56.0365 0.0177402 56.036 1 81.0104 0.00101939 81.01 1 85.1462 0.000586175 85.146 1 M DWHLKMPKMKMPKFSMPGFKAEGPEVDVNLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP FSM(1)PGFKAEGPEVDVNLPK FSM(85.15)PGFKAEGPEVDVNLPK 3 3 -2.2697 13240000 13240000 0 0 NaN 2551900 2547800 0 1814300 0 2874400 3451800 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2551900 0 0 2547800 0 0 0 0 0 1814300 0 0 0 0 0 2874400 0 0 3451800 0 0 0 0 0 0 0 0 743 1190 887 887 1302 1476 4112;4113;4114;4115;4116 4323;4324;4325;4326;4327 4116 4327 20190902_JH_MUT_Ubi_3 9418 4116 4327 20190902_JH_MUT_Ubi_3 9418 4116 4327 20190902_JH_MUT_Ubi_3 9418 sp|Q09666|AHNK_HUMAN 3032 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 69.1479 0.00345861 71.697 46.743 69.148 1 71.697 0.00345861 71.697 1 69.1479 0.00476925 69.148 1 M DWHLKMPKVKMPKFSMPGFKGEGPDVDVNLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP FSM(1)PGFKGEGPDVDVNLPK FSM(69.15)PGFKGEGPDVDVNLPK 3 3 -0.79504 4404900 4404900 0 0 NaN 0 1510100 0 0 0 0 2894700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1510100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2894700 0 0 0 0 0 0 0 0 744 1190 3032 3032 1303 1477 4117;4118 4328;4329 4118 4329 20190902_JH_MUT_Ubi_3 9246 4117 4328 20190821_JH_MUT_Ubi 8520 4117 4328 20190821_JH_MUT_Ubi 8520 sp|Q09666|AHNK_HUMAN 1136 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 53.779 0.00288175 72.819 39.506 53.779 1 72.819 0.00288175 72.819 1 53.779 0.0208375 53.779 1 M DWSLKIPKMKMPKFSMPSLKGEGPEVDVNLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP FSM(1)PSLKGEGPEVDVNLPK FSM(53.78)PSLKGEGPEVDVNLPK 3 3 -0.82975 3214000 3214000 0 0 2.3675 0 0 0 0 0 1254100 1959900 0 0 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1254100 0 0 1959900 0 0 0 0 0 0 0 0 745 1190 1136 1136 1304 1479 4120;4121 4331;4332 4121 4332 20190902_JH_MUT_Ubi_3 9186 4120 4331 20190902_JH_MUT_Ubi_2 9835 4120 4331 20190902_JH_MUT_Ubi_2 9835 sp|Q09666|AHNK_HUMAN 5322 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 40.1974 0.0201739 40.197 16.471 40.197 1 40.1974 0.0201739 40.197 1 M KGPSLKGDLDASVPSMKVHAPGLNLSGVGGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP GDLDASVPSM(1)KVHAPGLNLSGVGGK GDLDASVPSM(40.2)KVHAPGLNLSGVGGK 10 4 -0.81115 1785700 1785700 0 0 NaN 0 0 0 0 0 0 1785700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1785700 0 0 0 0 0 0 0 0 746 1190 5322 5322 1399 1593 4457 4683 4457 4683 20190902_JH_MUT_Ubi_3 8562 4457 4683 20190902_JH_MUT_Ubi_3 8562 4457 4683 20190902_JH_MUT_Ubi_3 8562 sp|Q09666|AHNK_HUMAN 5550 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 91.5472 1.56533E-05 91.547 59.357 91.547 1 91.5472 1.56533E-05 91.547 1 M HGAAPDISVKGPAFNMASPESDFGINLKGPK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP GPAFNM(1)ASPESDFGINLKGPK GPAFNM(91.55)ASPESDFGINLKGPK 6 3 3.4471 938870 938870 0 0 NaN 0 0 0 0 0 938870 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 938870 0 0 0 0 0 0 0 0 0 0 0 747 1190 5550 5550 1640 1868 5246 5523 5246 5523 20190902_JH_MUT_Ubi_2 10284 5246 5523 20190902_JH_MUT_Ubi_2 10284 5246 5523 20190902_JH_MUT_Ubi_2 10284 sp|Q09666|AHNK_HUMAN 5494 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 104.233 4.21144E-10 104.23 63.849 104.23 1 103.941 4.38657E-10 103.94 1 104.233 4.21144E-10 104.23 1 M GLPGIGVQGLEGNLQMPGIKSSGCDVNLPGV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX GPTVGGGLPGIGVQGLEGNLQM(1)PGIK GPTVGGGLPGIGVQGLEGNLQM(104.23)PGIK 22 3 -0.59862 2567900 2567900 0 0 NaN 0 0 0 0 0 1580800 987100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1580800 0 0 987100 0 0 0 0 0 0 0 0 748 1190 5494 5494 1657 1887 5299;5300 5580;5581 5300 5581 20190902_JH_MUT_Ubi_3 12275 5300 5581 20190902_JH_MUT_Ubi_3 12275 5300 5581 20190902_JH_MUT_Ubi_3 12275 sp|Q09666|AHNK_HUMAN 3160 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 62.9405 0.00826755 62.94 31.521 62.94 1 62.9405 0.00826755 62.94 1 M DWHLKMPKIKMPKISMPGFKGEGPEVDVNLP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP ISM(1)PGFKGEGPEVDVNLPK ISM(62.94)PGFKGEGPEVDVNLPK 3 3 -1.5582 2252600 2252600 0 0 NaN 0 0 0 0 0 2252600 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2252600 0 0 0 0 0 0 0 0 0 0 0 749 1190 3160 3160 2260 2572 7407 7786 7407 7786 20190902_JH_MUT_Ubi_2 9473 7407 7786 20190902_JH_MUT_Ubi_2 9473 7407 7786 20190902_JH_MUT_Ubi_2 9473 sp|Q09666|AHNK_HUMAN 2357 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 53.8608 0.0248742 53.861 26.636 53.861 1 53.8608 0.0248742 53.861 M KGPELDVKGPKLDADMPEVAVEGPNGKWKTP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX LDADM(1)PEVAVEGPNGKWK LDADM(53.86)PEVAVEGPNGKWK 5 3 -0.20118 517010 517010 0 0 NaN 0 0 0 0 0 0 517010 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517010 0 0 0 0 0 0 0 0 750 1190 2357 2357 2525 2869 8213 8635 8213 8635 20190902_JH_MUT_Ubi_3 8334 8213 8635 20190902_JH_MUT_Ubi_3 8334 8213 8635 20190902_JH_MUT_Ubi_3 8334 sp|Q09666|AHNK_HUMAN 1620 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 57.4251 0.0268782 57.425 27.094 57.425 1 57.4251 0.0268782 57.425 1 M EGDLKGPEIDVKAPKMDVNVGDIDIEGPEGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DVNVGDIDIEGPEGK M(57.43)DVNVGDIDIEGPEGK 1 2 2.7652 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 751 1190 1620 1620 2889 3281 9317 9809 9317 9809 20190902_JH_WT_Ubi_2 11611 9317 9809 20190902_JH_WT_Ubi_2 11611 9317 9809 20190902_JH_WT_Ubi_2 11611 sp|Q09666|AHNK_HUMAN 5248 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 94.2811 1.89756E-05 105.5 66.357 94.281 1 105.501 1.89756E-05 105.5 1 46.5141 0.024852 46.514 1 73.6876 0.00125578 73.688 1 94.2811 7.6651E-05 94.281 1 M FPKFSMPKIGIPGVKMEGGGAEVHAQLPSLE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EGGGAEVHAQLPSLEGDLR M(94.28)EGGGAEVHAQLPSLEGDLR 1 3 -1.2874 9514600 9514600 0 0 NaN 0 0 3465400 0 0 1315500 838480 3895200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3465400 0 0 0 0 0 0 0 0 1315500 0 0 838480 0 0 3895200 0 0 0 0 0 752 1190 5248 5248 2897 3289 9335;9336;9337;9338 9828;9829;9830;9831 9338 9831 20190902_JH_WT_Ubi_2 10570 9337 9830 20190821_JH_WT_Ubi 8424 9337 9830 20190821_JH_WT_Ubi 8424 sp|Q09666|AHNK_HUMAN 1352 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 88.5523 0.00568335 88.552 31.378 88.552 1 62.0879 0.0323721 62.088 1 76.1645 0.0130689 76.165 1 61.4227 0.0337312 61.423 1 88.5523 0.00568335 88.552 1 M LKGDVDVSLPEVEGEMKVPDVDIKGPKVDIS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPXXXXXXX VEGEM(1)KVPDVDIK VEGEM(88.55)KVPDVDIK 5 3 0.10307 13103000 13103000 0 0 9.5859 2992900 2042900 0 4074500 0 3992400 0 0 0 NaN NaN NaN NaN NaN 2.9209 NaN NaN NaN 2992900 0 0 2042900 0 0 0 0 0 4074500 0 0 0 0 0 3992400 0 0 0 0 0 0 0 0 0 0 0 753 1190 1352 1352 4781 5424 15326;15327;15328;15329 16098;16099;16100;16101 15329 16101 20190902_JH_MUT_Ubi_2 6704 15329 16101 20190902_JH_MUT_Ubi_2 6704 15329 16101 20190902_JH_MUT_Ubi_2 6704 sp|Q09666|AHNK_HUMAN 1224 sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein AHNAK OS=Homo sapiens OX=9606 GN=AHNAK PE=1 SV=2 1 64.1212 0.0186149 71.607 31.494 64.121 1 60.1571 0.0363167 60.157 1 64.1212 0.028782 64.121 1 69.0301 0.0221147 69.03 1 71.6068 0.0186149 71.607 1 M VKGDVDVSVPKVEGEMKVPDVEIKGPKMDID X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPXXXXXXX VEGEM(1)KVPDVEIK VEGEM(64.12)KVPDVEIK 5 3 0.59072 16996000 16996000 0 0 NaN 3851100 1672500 0 5454200 6017900 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3851100 0 0 1672500 0 0 0 0 0 5454200 0 0 6017900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 754 1190 1224 1224 4782 5426 15332;15333;15334;15335 16104;16105;16106;16107 15335 16107 20190821_JH_MUT_Ubi 5494 15334 16106 20190902_JH_EV_Ubi_3 6412 15334 16106 20190902_JH_EV_Ubi_3 6412 sp|Q0VDD8-4|DYH14_HUMAN 2589 sp|Q0VDD8-4|DYH14_HUMAN sp|Q0VDD8-4|DYH14_HUMAN sp|Q0VDD8-4|DYH14_HUMAN Isoform 4 of Dynein heavy chain 14, axonemal OS=Homo sapiens OX=9606 GN=DNAH14 1 57.0474 0.0299686 57.047 22.342 57.047 1 57.0474 0.0299686 57.047 M IISCSLAIYHQVRQNMLPTPTKCHYMFNLRD X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPXXXXXXXXX QNM(1)LPTPTK QNM(57.05)LPTPTK 3 2 -1.2362 776910 776910 0 0 NaN 0 0 0 0 776910 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 776910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 755 1191 2589 2589 3680 4190 11740 12320 11740 12320 20190902_JH_EV_Ubi_3 3824 11740 12320 20190902_JH_EV_Ubi_3 3824 11740 12320 20190902_JH_EV_Ubi_3 3824 sp|Q12802-4|AKP13_HUMAN;sp|Q12802|AKP13_HUMAN;sp|Q12802-2|AKP13_HUMAN 280;280;280 sp|Q12802-4|AKP13_HUMAN sp|Q12802-4|AKP13_HUMAN sp|Q12802-4|AKP13_HUMAN Isoform 3 of A-kinase anchor protein 13 OS=Homo sapiens OX=9606 GN=AKAP13;sp|Q12802|AKP13_HUMAN A-kinase anchor protein 13 OS=Homo sapiens OX=9606 GN=AKAP13 PE=1 SV=2;sp|Q12802-2|AKP13_HUMAN Isoform 2 of A-kinase anchor protein 13 O 0.868501 8.31316 0.0255667 49.081 13.731 49.081 0.868501 8.31316 0.0255667 49.081 1 M HPFPGDGCTGPIFKLMNIQQQLMKTNLKQMD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX LM(0.869)NIQQQLM(0.131)KTNLK LM(8.31)NIQQQLM(-8.31)KTNLK 2 4 -1.4674 1938500 1938500 0 0 NaN 0 0 0 1938500 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1938500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 756 1197 280 280 2721 3094 8820 9277 8820 9277 20190902_JH_EV_Ubi_2 7133 8820 9277 20190902_JH_EV_Ubi_2 7133 8820 9277 20190902_JH_EV_Ubi_2 7133 sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN 77;79 sp|Q12846-2|STX4_HUMAN sp|Q12846-2|STX4_HUMAN sp|Q12846-2|STX4_HUMAN Isoform 2 of Syntaxin-4 OS=Homo sapiens OX=9606 GN=STX4;sp|Q12846|STX4_HUMAN Syntaxin-4 OS=Homo sapiens OX=9606 GN=STX4 PE=1 SV=2 1 64.5215 6.38902E-06 95.361 55.046 64.522 1 70.5006 0.00367965 70.501 1 65.3652 0.00322849 65.365 1 59.4286 0.00782186 59.429 1 95.361 6.38902E-06 95.361 1 64.5215 0.00846372 64.522 1 M KQQVTILATPLPEESMKQELQNLRDEIKQLG GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX VQELEKQQVTILATPLPEESM(1)K VQELEKQQVTILATPLPEESM(64.52)K 21 3 4.0106 4782900 4782900 0 0 5.4878 0 1419500 0 1170300 0 0 2193100 0 0 NaN 1.6287 NaN NaN NaN NaN NaN NaN NaN 0 0 0 1419500 0 0 0 0 0 1170300 0 0 0 0 0 0 0 0 2193100 0 0 0 0 0 0 0 0 757 1198 77 77 4988 5659 16014;16015;16016;16017;16018 16824;16825;16826;16827;16828 16018 16828 20190902_JH_WT_Ubi_2 11443 16017 16827 20190902_JH_MUT_Ubi_3 9700 16017 16827 20190902_JH_MUT_Ubi_3 9700 sp|Q12905|ILF2_HUMAN 113 sp|Q12905|ILF2_HUMAN sp|Q12905|ILF2_HUMAN sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 OS=Homo sapiens OX=9606 GN=ILF2 PE=1 SV=2 1 118.708 9.2599E-06 118.71 67.574 118.71 1 118.708 9.2599E-06 118.71 1 M QIEEVRQVGSYKKGTMTTGHNVADLVVILKI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX GTM(1)TTGHNVADLVVILK GTM(118.71)TTGHNVADLVVILK 3 3 0.87483 6645900 6645900 0 0 0.91643 6645900 0 0 0 0 0 0 0 0 NaN 0 0 NaN NaN NaN NaN NaN NaN 6645900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 758 1199 113 113 1725 1964 5497 5786 5497 5786 20190821_JH_EV_Ubi 9954 5497 5786 20190821_JH_EV_Ubi 9954 5497 5786 20190821_JH_EV_Ubi 9954 sp|Q12905|ILF2_HUMAN 386 sp|Q12905|ILF2_HUMAN sp|Q12905|ILF2_HUMAN sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 OS=Homo sapiens OX=9606 GN=ILF2 PE=1 SV=2 1 121.496 9.72491E-13 121.5 103.7 121.5 1 112.613 6.1165E-12 112.61 1 121.496 9.72491E-13 121.5 1 M EENTEEPPQGEEEESMETQE___________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX KEGEEEEENTEEPPQGEEEESM(1)ETQE KEGEEEEENTEEPPQGEEEESM(121.5)ETQE 22 3 -0.04186 3169700 3169700 0 0 NaN 0 0 1036100 0 0 0 0 0 2133600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1036100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2133600 0 0 759 1199 386 386 2333 2654 7679;7680 8077;8078 7680 8078 20190902_JH_WT_Ubi_3 6844 7680 8078 20190902_JH_WT_Ubi_3 6844 7680 8078 20190902_JH_WT_Ubi_3 6844 sp|Q12906|ILF3_HUMAN;sp|Q12906-5|ILF3_HUMAN;sp|Q12906-2|ILF3_HUMAN;sp|Q12906-3|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN;sp|Q12906-4|ILF3_HUMAN;sp|Q12906-6|ILF3_HUMAN 434;434;434;434;434;434;434 sp|Q12906|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN sp|Q12906-7|ILF3_HUMAN sp|Q12906|ILF3_HUMAN Interleukin enhancer-binding factor 3 OS=Homo sapiens OX=9606 GN=ILF3 PE=1 SV=3;sp|Q12906-5|ILF3_HUMAN Isoform 5 of Interleukin enhancer-binding factor 3 OS=Homo sapiens OX=9606 GN=ILF3;sp|Q12906-2|ILF3_HUMAN Isoform 2 of Interleukin e 1 56.247 2.73915E-21 127.16 97.894 56.247 1 127.163 2.73915E-21 127.16 1 72.1099 6.32214E-05 72.11 1 102.909 3.61241E-11 102.91 1 93.4058 1.06202E-07 93.406 1 50.4134 0.00201195 50.413 1 56.6632 0.000730143 56.663 1 124.086 3.9029E-11 124.09 1 56.247 0.000764361 56.247 1 M KLVSQTGPVHAPIFTMSVEVDGNSFEASGPS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP LVSQTGPVHAPIFTM(1)SVEVDGNSFEASGPSK LVSQTGPVHAPIFTM(56.25)SVEVDGNSFEASGPSK 15 3 -0.44939 13078000 13078000 0 0 NaN 4187800 1937100 2029600 0 1360700 1459100 735500 0 1368100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 4187800 0 0 1937100 0 0 2029600 0 0 0 0 0 1360700 0 0 1459100 0 0 735500 0 0 0 0 0 1368100 0 0 760 1200;1201 434;434 434 2859 3242 9221;9222;9223;9224;9225;9226;9227;9228 9704;9705;9706;9707;9708;9709;9710;9711;9712;9713 9228 9713 20190902_JH_WT_Ubi_3 11880 9221 9704 20190821_JH_EV_Ubi 10797 9221 9704 20190821_JH_EV_Ubi 10797 sp|Q12907|LMAN2_HUMAN 114 sp|Q12907|LMAN2_HUMAN sp|Q12907|LMAN2_HUMAN sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens OX=9606 GN=LMAN2 PE=1 SV=1 1 71.692 0.022119 71.692 46.916 71.692 1 63.5339 0.0330536 63.534 1 71.692 0.022119 71.692 1 M GSIWNHQPCFLKDWEMHVHFKVHGTGKKNLH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPXXXXXXXXXX DWEM(1)HVHFK DWEM(71.69)HVHFK 4 3 -0.65434 9697900 9697900 0 0 0.26634 0 0 3369800 0 0 0 0 6328200 0 0 0 0.20273 NaN NaN NaN NaN 0.86451 0 0 0 0 0 0 0 3369800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6328200 0 0 0 0 0 761 1202 114 114 754 857 2376;2377 2505;2506 2377 2506 20190902_JH_WT_Ubi_2 7407 2377 2506 20190902_JH_WT_Ubi_2 7407 2377 2506 20190902_JH_WT_Ubi_2 7407 sp|Q12996|CSTF3_HUMAN 620 sp|Q12996|CSTF3_HUMAN sp|Q12996|CSTF3_HUMAN sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor subunit 3 OS=Homo sapiens OX=9606 GN=CSTF3 PE=1 SV=1 1 43.4968 0.013858 43.497 22.127 43.497 1 43.4968 0.013858 43.497 1 M VPGGVFPVPPAAVVLMKLLPPPICFQGPFVQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX HLAPPGLHPVPGGVFPVPPAAVVLM(1)K HLAPPGLHPVPGGVFPVPPAAVVLM(43.5)K 25 4 -0.43979 1371300 1371300 0 0 0.39078 0 0 0 0 0 0 0 1371300 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1371300 0 0 0 0 0 762 1206 620 620 1891 2151 6112 6436 6112 6436 20190902_JH_WT_Ubi_2 13421 6112 6436 20190902_JH_WT_Ubi_2 13421 6112 6436 20190902_JH_WT_Ubi_2 13421 sp|Q13009-2|TIAM1_HUMAN;sp|Q13009|TIAM1_HUMAN 580;580 sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN Isoform 2 of T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1;sp|Q13009|TIAM1_HUMAN T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1 PE=1 SV=2 1 49.1875 0.020318 49.188 26.86 49.188 1 49.1875 0.020318 49.188 3 M SEIKKLEQKIDMDEKMKKMGEMQLSSVTDSK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)KKM(1)GEM(1)QLSSVTDSK M(49.19)KKM(49.19)GEM(49.19)QLSSVTDSK 1 4 -2.1674 134280000 0 0 134280000 NaN 0 0 0 0 0 0 0 0 134280000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134280000 763 1207 580 580 2927 3324 9423 9918 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 sp|Q13009-2|TIAM1_HUMAN;sp|Q13009|TIAM1_HUMAN 583;583 sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN Isoform 2 of T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1;sp|Q13009|TIAM1_HUMAN T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1 PE=1 SV=2 1 49.1875 0.020318 49.188 26.86 49.188 1 49.1875 0.020318 49.188 3 M KKLEQKIDMDEKMKKMGEMQLSSVTDSKKKK X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX M(1)KKM(1)GEM(1)QLSSVTDSK M(49.19)KKM(49.19)GEM(49.19)QLSSVTDSK 4 4 -2.1674 134280000 0 0 134280000 NaN 0 0 0 0 0 0 0 0 134280000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134280000 764 1207 583 583 2927 3324 9423 9918 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 sp|Q13009-2|TIAM1_HUMAN;sp|Q13009|TIAM1_HUMAN 586;586 sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN sp|Q13009-2|TIAM1_HUMAN Isoform 2 of T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1;sp|Q13009|TIAM1_HUMAN T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens OX=9606 GN=TIAM1 PE=1 SV=2 1 49.1875 0.020318 49.188 26.86 49.188 1 49.1875 0.020318 49.188 3 M EQKIDMDEKMKKMGEMQLSSVTDSKKKKTIL X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX M(1)KKM(1)GEM(1)QLSSVTDSK M(49.19)KKM(49.19)GEM(49.19)QLSSVTDSK 7 4 -2.1674 134280000 0 0 134280000 NaN 0 0 0 0 0 0 0 0 134280000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134280000 765 1207 586 586 2927 3324 9423 9918 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 9423 9918 20190902_JH_WT_Ubi_3 5459 sp|Q13098-5|CSN1_HUMAN;sp|Q13098|CSN1_HUMAN;sp|Q13098-7|CSN1_HUMAN;sp|Q13098-6|CSN1_HUMAN 197;201;237;186 sp|Q13098-5|CSN1_HUMAN sp|Q13098-5|CSN1_HUMAN sp|Q13098-5|CSN1_HUMAN Isoform 4 of COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1;sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4;sp|Q13098-7|CSN1_HUMAN Isoform 2 of COP9 signalosome co 1 71.5012 0.0170468 71.501 40.931 71.501 1 51.8544 0.0349837 51.854 1 55.37 0.0304588 55.37 1 71.5012 0.0170468 71.501 M SRARDYCTSAKHVINMCLNVIKVSVYLQNWS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX HVINM(1)CLNVIK HVINM(71.5)CLNVIK 5 2 -0.31354 6237200 6237200 0 0 NaN 0 0 1162400 0 0 0 0 2801200 2273600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1162400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2801200 0 0 2273600 0 0 766 1212 197 197 2026 2310 6665;6666;6667 7012;7013;7014 6667 7014 20190902_JH_WT_Ubi_3 7439 6667 7014 20190902_JH_WT_Ubi_3 7439 6667 7014 20190902_JH_WT_Ubi_3 7439 sp|Q13137-5|CACO2_HUMAN;sp|Q13137-2|CACO2_HUMAN;sp|Q13137|CACO2_HUMAN;sp|Q13137-3|CACO2_HUMAN;sp|Q13137-4|CACO2_HUMAN 232;262;304;325;328 sp|Q13137-5|CACO2_HUMAN sp|Q13137-5|CACO2_HUMAN sp|Q13137-5|CACO2_HUMAN Isoform 5 of Calcium-binding and coiled-coil domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CALCOCO2;sp|Q13137-2|CACO2_HUMAN Isoform 2 of Calcium-binding and coiled-coil domain-containing protein 2 OS=Homo sapiens OX=9606 GN 1 62.0349 0.0186805 62.035 24.484 62.035 1 59.2252 0.0223261 59.225 1 62.0349 0.0186805 62.035 1 M MKQNETTAMKKQQELMDENFDLSKRLSENEI X;X;X;X;X;X;X;X;X;GlyGly (K);GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPXXXXXXX KQQELM(1)DENFDLSK KQQELM(62.03)DENFDLSK 6 3 0.17853 1559100 1559100 0 0 NaN 0 0 0 0 0 798030 761060 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 798030 0 0 761060 0 0 0 0 0 0 0 0 767 1216 232 232 2448 2783 8003;8004 8414;8415 8004 8415 20190902_JH_MUT_Ubi_3 6489 8004 8415 20190902_JH_MUT_Ubi_3 6489 8004 8415 20190902_JH_MUT_Ubi_3 6489 sp|Q13177|PAK2_HUMAN 514 sp|Q13177|PAK2_HUMAN sp|Q13177|PAK2_HUMAN sp|Q13177|PAK2_HUMAN Serine/threonine-protein kinase PAK 2 OS=Homo sapiens OX=9606 GN=PAK2 PE=1 SV=3 1 105.975 0.0014642 105.98 48.385 105.98 1 105.975 0.0014642 105.98 M FLKLAKPLSSLTPLIMAAKEAMKSNR_____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPXXXXXXXXXXXX PLSSLTPLIM(1)AAK PLSSLTPLIM(105.98)AAK 10 2 0.67287 2103000 2103000 0 0 NaN 0 0 0 0 0 0 0 0 2103000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2103000 0 0 768 1221 514 514 3449 3935 11071 11636 11071 11636 20190902_JH_WT_Ubi_3 12105 11071 11636 20190902_JH_WT_Ubi_3 12105 11071 11636 20190902_JH_WT_Ubi_3 12105 sp|Q13185|CBX3_HUMAN 158 sp|Q13185|CBX3_HUMAN sp|Q13185|CBX3_HUMAN sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 OS=Homo sapiens OX=9606 GN=CBX3 PE=1 SV=4 1 75.9113 5.76904E-05 111.66 81.68 75.911 1 106.293 0.000293646 106.29 1 88.2244 0.00176958 88.224 1 68.2616 0.0112048 68.262 1 110.251 0.000104952 110.25 1 99.8343 0.000601476 99.834 1 96.3709 0.00092584 96.371 1 111.661 5.76904E-05 111.66 1 69.3144 0.0102567 69.314 1 75.9113 0.00473058 75.911 1 M KDSDEADLVLAKEANMKCPQIVIAFYEERLT X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX DSDEADLVLAKEANM(1)K DSDEADLVLAKEANM(75.91)K 15 3 0.17844 40598000 40598000 0 0 NaN 4449600 2703000 4197200 4119500 5967100 4374800 4126700 4974600 5684900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 4449600 0 0 2703000 0 0 4197200 0 0 4119500 0 0 5967100 0 0 4374800 0 0 4126700 0 0 4974600 0 0 5684900 0 0 769 1222 158 158 674 769 2105;2106;2107;2108;2109;2110;2111;2112;2113 2230;2231;2232;2233;2234;2235;2236;2237;2238 2113 2238 20190902_JH_WT_Ubi_3 9155 2110 2235 20190902_JH_MUT_Ubi_3 7999 2110 2235 20190902_JH_MUT_Ubi_3 7999 sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN 468;550 sp|Q13263-2|TIF1B_HUMAN sp|Q13263-2|TIF1B_HUMAN sp|Q13263-2|TIF1B_HUMAN Isoform 2 of Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28;sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28 PE=1 SV=5 1 86.5083 3.19871E-16 115.58 81.664 86.508 1 55.6863 0.00108959 55.686 1 97.0848 6.88211E-08 97.085 1 114.623 3.60285E-16 114.62 1 115.582 3.19871E-16 115.58 1 86.5083 2.48386E-06 86.508 1 M GTAPAGTPGAPPLAGMAIVKEEETEAAIGAP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX GAAAAATGQPGTAPAGTPGAPPLAGM(1)AIVK GAAAAATGQPGTAPAGTPGAPPLAGM(86.51)AIVK 26 3 0.10594 24424000 24424000 0 0 6.0273 3896000 0 0 3807000 4574700 0 0 5517900 6628500 2.8575 NaN NaN 3.4913 NaN NaN NaN NaN 4.147 3896000 0 0 0 0 0 0 0 0 3807000 0 0 4574700 0 0 0 0 0 0 0 0 5517900 0 0 6628500 0 0 770 1227 468 468 1348 1530 4244;4245;4246;4247;4248 4463;4464;4465;4466;4467 4248 4467 20190902_JH_WT_Ubi_3 10605 4247 4466 20190902_JH_WT_Ubi_2 11083 4247 4466 20190902_JH_WT_Ubi_2 11083 sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN 341;423 sp|Q13263-2|TIF1B_HUMAN sp|Q13263-2|TIF1B_HUMAN sp|Q13263-2|TIF1B_HUMAN Isoform 2 of Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28;sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28 PE=1 SV=5 1 59.8998 0.00798916 69.935 34.309 59.9 1 62.6582 0.0165358 62.658 1 69.9345 0.00798916 69.935 1 59.8998 0.0250823 59.9 1 M IVAERPGTNSTGPAPMAPPRAPGPLSKQGSG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX IVAERPGTNSTGPAPM(1)APPR IVAERPGTNSTGPAPM(59.9)APPR 16 3 0.91023 4316600 4316600 0 0 NaN 0 0 0 1255000 1454800 0 0 1606800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1255000 0 0 1454800 0 0 0 0 0 0 0 0 1606800 0 0 0 0 0 771 1227 341 341 2285 2602 7516;7517;7518 7903;7904;7905 7518 7905 20190902_JH_WT_Ubi_2 6704 7517 7904 20190902_JH_EV_Ubi_3 5345 7517 7904 20190902_JH_EV_Ubi_3 5345 sp|Q13310-2|PABP4_HUMAN;sp|Q13310|PABP4_HUMAN;sp|Q13310-3|PABP4_HUMAN;sp|P11940-2|PABP1_HUMAN;sp|P11940|PABP1_HUMAN 72;72;72;72;72 sp|Q13310-2|PABP4_HUMAN sp|Q13310-2|PABP4_HUMAN sp|Q13310-2|PABP4_HUMAN Isoform 2 of Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4;sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1;sp|Q13310-3|PABP4_HUMAN Isoform 3 of Polyadenylate-bind 1 71.8061 0.000132185 126.71 93.024 71.806 1 126.709 0.000132185 126.71 1 71.8061 0.0183443 71.806 1 M VNFQQPADAERALDTMNFDVIKGKPIRIMWS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPXXXXXXX ALDTM(1)NFDVIKGK ALDTM(71.81)NFDVIKGK 5 3 -0.6244 3240400 3240400 0 0 NaN 0 0 0 0 0 2043000 1197400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2043000 0 0 1197400 0 0 0 0 0 0 0 0 772 1230 72 72 197 225 660;661 726;727 661 727 20190902_JH_MUT_Ubi_3 7651 660 726 20190902_JH_MUT_Ubi_2 8089 660 726 20190902_JH_MUT_Ubi_2 8089 sp|Q13423|NNTM_HUMAN 652 sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=NNT PE=1 SV=3 1 50.2316 0.0135333 50.232 23.083 50.232 1 45.4131 0.022951 45.413 1 50.2316 0.0135333 50.232 1 M GLSTQGTARLGNALGMIGVAGGLAATLGVLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP LGNALGM(1)IGVAGGLAATLGVLK LGNALGM(50.23)IGVAGGLAATLGVLK 7 3 -0.41965 4854700 4854700 0 0 3.1382 2816800 0 2037900 0 0 0 0 0 0 NaN 0 NaN NaN NaN NaN NaN NaN NaN 2816800 0 0 0 0 0 2037900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 773 1236 652 652 2623 2980 8510;8511 8951;8952 8511 8952 20190821_JH_WT_Ubi 15237 8511 8952 20190821_JH_WT_Ubi 15237 8511 8952 20190821_JH_WT_Ubi 15237 sp|Q13423|NNTM_HUMAN 676 sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=NNT PE=1 SV=3 1 63.1224 0.00128579 63.122 27.42 63.122 1 63.1224 0.00128579 63.122 2 M ATLGVLKPGPELLAQMSGAMALGGTIGLTIA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP PGPELLAQM(1)SGAM(1)ALGGTIGLTIAK PGPELLAQM(63.12)SGAM(63.12)ALGGTIGLTIAK 9 3 -0.17251 1628400 0 1628400 0 NaN 1628400 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 1628400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774 1236 676 676 3361 3837 10772 11332 10772 11332 20190821_JH_EV_Ubi 13205 10772 11332 20190821_JH_EV_Ubi 13205 10772 11332 20190821_JH_EV_Ubi 13205 sp|Q13423|NNTM_HUMAN 680 sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=NNT PE=1 SV=3 1 63.1224 0.00128579 63.122 27.42 63.122 1 63.1224 0.00128579 63.122 2 M VLKPGPELLAQMSGAMALGGTIGLTIAKRIQ X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPXXX PGPELLAQM(1)SGAM(1)ALGGTIGLTIAK PGPELLAQM(63.12)SGAM(63.12)ALGGTIGLTIAK 13 3 -0.17251 1628400 0 1628400 0 NaN 1628400 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 1628400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 775 1236 680 680 3361 3837 10772 11332 10772 11332 20190821_JH_EV_Ubi 13205 10772 11332 20190821_JH_EV_Ubi 13205 10772 11332 20190821_JH_EV_Ubi 13205 sp|Q13451|FKBP5_HUMAN 448 sp|Q13451|FKBP5_HUMAN sp|Q13451|FKBP5_HUMAN sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens OX=9606 GN=FKBP5 PE=1 SV=2 1 79.8749 0.00889727 79.875 55.599 79.875 1 79.8749 0.00889727 79.875 1 M TSEGVTNEKGTDSQAMEEEKPEGHV______ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX GTDSQAM(1)EEEKPEGHV GTDSQAM(79.87)EEEKPEGHV 7 3 -0.10507 2767500 2767500 0 0 NaN 0 0 2767500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2767500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 776 1241 448 448 1712 1951 5465 5752 5465 5752 20190821_JH_WT_Ubi 3567 5465 5752 20190821_JH_WT_Ubi 3567 5465 5752 20190821_JH_WT_Ubi 3567 sp|Q13501-2|SQSTM_HUMAN;sp|Q13501|SQSTM_HUMAN 227;311 sp|Q13501-2|SQSTM_HUMAN sp|Q13501-2|SQSTM_HUMAN sp|Q13501-2|SQSTM_HUMAN Isoform 2 of Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1;sp|Q13501|SQSTM_HUMAN Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1 PE=1 SV=1 1 75.5877 7.81263E-05 75.588 55.685 75.588 1 55.4281 0.0011877 55.428 1 49.9679 0.00346209 49.968 1 72.7279 7.81263E-05 72.728 1 75.5877 0.000135772 75.588 1 M PGGNVEGATQSLAEQMRKIALESEGRPEEQM X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SSSQPSSCCSDPSKPGGNVEGATQSLAEQM(1)R SSSQPSSCCSDPSKPGGNVEGATQSLAEQM(75.59)R 30 3 3.9727 6298100 6298100 0 0 NaN 0 0 0 595440 429950 0 0 3041200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 595440 0 0 429950 0 0 0 0 0 0 0 0 3041200 0 0 0 0 0 777 1246 227 227 4174 4741;4742 13218;13219;13220;13221 13861;13862;13863;13864 13221 13864 20190902_JH_WT_Ubi_3 7543 13221 13864 20190902_JH_WT_Ubi_3 7543 13220 13863 20190902_JH_WT_Ubi_2 7929 sp|Q13509-2|TBB3_HUMAN;sp|Q13509|TBB3_HUMAN 161;233 sp|Q13509-2|TBB3_HUMAN sp|Q13509-2|TBB3_HUMAN sp|Q13509-2|TBB3_HUMAN Isoform 2 of Tubulin beta-3 chain OS=Homo sapiens OX=9606 GN=TUBB3;sp|Q13509|TBB3_HUMAN Tubulin beta-3 chain OS=Homo sapiens OX=9606 GN=TUBB3 PE=1 SV=2 1 78.2358 0.000139856 78.236 48.76 78.236 1 78.2358 0.000139856 78.236 1 41.4231 0.0059974 51.577 1 47.7451 0.0121761 47.745 1 M ATPTYGDLNHLVSATMSGVTTSLRFPGQLNA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LATPTYGDLNHLVSATM(1)SGVTTSLR LATPTYGDLNHLVSATM(78.24)SGVTTSLR 17 3 -1.8698 8755500 8755500 0 0 NaN 0 0 4473200 0 0 1577000 1464900 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4473200 0 0 0 0 0 0 0 0 1577000 0 0 1464900 0 0 0 0 0 0 0 0 778 1248 161 161 2518 2858 8168;8169;8170;8171 8586;8587;8588;8589 8171 8589 20190821_JH_WT_Ubi 11896 8171 8589 20190821_JH_WT_Ubi 11896 8171 8589 20190821_JH_WT_Ubi 11896 sp|Q13526|PIN1_HUMAN 146 sp|Q13526|PIN1_HUMAN sp|Q13526|PIN1_HUMAN sp|Q13526|PIN1_HUMAN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens OX=9606 GN=PIN1 PE=1 SV=1 1 99.7109 3.25334E-13 137.17 99.138 99.711 1 137.166 3.25334E-13 137.17 1 70.2351 0.00294824 70.235 1 99.7109 7.38309E-05 99.711 1 97.2911 0.000105756 97.291 1 M QKPFEDASFALRTGEMSGPVFTDSGIHIILR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP TGEM(1)SGPVFTDSGIHIILR TGEM(99.71)SGPVFTDSGIHIILR 4 3 0.90552 10979000 10979000 0 0 4.8593 4781000 1561200 3478300 0 1158300 0 0 0 0 NaN NaN 1.5395 NaN NaN NaN NaN NaN NaN 4781000 0 0 1561200 0 0 3478300 0 0 0 0 0 1158300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 779 1249 146 146 4367 4950 13821;13822;13823;13824 14503;14504;14505;14506;14507 13824 14507 20190821_JH_WT_Ubi 10845 13821 14504 20190821_JH_EV_Ubi 11088 13821 14504 20190821_JH_EV_Ubi 11088 sp|Q13541|4EBP1_HUMAN 91 sp|Q13541|4EBP1_HUMAN sp|Q13541|4EBP1_HUMAN sp|Q13541|4EBP1_HUMAN Eukaryotic translation initiation factor 4E-binding protein 1 OS=Homo sapiens OX=9606 GN=EIF4EBP1 PE=1 SV=3 1 49.6125 0.00751136 49.613 16.265 49.613 1 49.6125 0.00751136 49.613 1 M PTIPGVTSPSSDEPPMEASQSHLRNSPEDKR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX DLPTIPGVTSPSSDEPPM(1)EASQSHLR DLPTIPGVTSPSSDEPPM(49.61)EASQSHLR 18 3 2.4409 2246000 2246000 0 0 NaN 0 0 0 0 0 0 0 0 2246000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2246000 0 0 780 1251 91 91 587 673 1848 1958 1848 1958 20190902_JH_WT_Ubi_3 11484 1848 1958 20190902_JH_WT_Ubi_3 11484 1848 1958 20190902_JH_WT_Ubi_3 11484 sp|Q13630|FCL_HUMAN 72 sp|Q13630|FCL_HUMAN sp|Q13630|FCL_HUMAN sp|Q13630|FCL_HUMAN GDP-L-fucose synthase OS=Homo sapiens OX=9606 GN=TSTA3 PE=1 SV=1 1 65.943 0.0045563 65.943 41.668 65.943 1 41.5417 0.0308997 41.542 1 55.7818 0.0116764 55.782 1 57.9727 0.0098725 57.973 1 42.9467 0.0286659 42.947 1 57.1479 0.0105516 57.148 1 65.943 0.0045563 65.943 1 M LFEKVQPTHVIHLAAMVGGLFRNIKYNLDFW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPXXXXXXXXX VQPTHVIHLAAM(1)VGGLFR VQPTHVIHLAAM(65.94)VGGLFR 12 4 -1.594 25410000 25410000 0 0 5.4587 0 2002900 11770000 0 0 1394300 1844500 4474400 3924000 NaN NaN 2.5286 NaN NaN NaN NaN NaN NaN 0 0 0 2002900 0 0 11770000 0 0 0 0 0 0 0 0 1394300 0 0 1844500 0 0 4474400 0 0 3924000 0 0 781 1257 72 72 4996 5668 16033;16034;16035;16036;16037;16038 16843;16844;16845;16846;16847;16848 16038 16848 20190902_JH_WT_Ubi_3 11283 16038 16848 20190902_JH_WT_Ubi_3 11283 16038 16848 20190902_JH_WT_Ubi_3 11283 sp|Q13724-2|MOGS_HUMAN;sp|Q13724|MOGS_HUMAN 14;120 sp|Q13724-2|MOGS_HUMAN sp|Q13724-2|MOGS_HUMAN sp|Q13724-2|MOGS_HUMAN Isoform 2 of Mannosyl-oligosaccharide glucosidase OS=Homo sapiens OX=9606 GN=MOGS;sp|Q13724|MOGS_HUMAN Mannosyl-oligosaccharide glucosidase OS=Homo sapiens OX=9606 GN=MOGS PE=1 SV=5 1 58.1583 0.0206963 58.158 20.982 58.158 1 58.1583 0.0206963 58.158 1 M __MKTRSPKPLLTGLMWAQQGTTPGTPKLRH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPXXX PLLTGLM(1)WAQQGTTPGTPK PLLTGLM(58.16)WAQQGTTPGTPK 7 3 2.6852 9082700 9082700 0 0 NaN 0 0 9082700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9082700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 782 1259 14 14 3439 3924 11027 11592 11027 11592 20190821_JH_WT_Ubi 11435 11027 11592 20190821_JH_WT_Ubi 11435 11027 11592 20190821_JH_WT_Ubi 11435 sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN 555;568;290 sp|Q13740-2|CD166_HUMAN sp|Q13740-2|CD166_HUMAN sp|Q13740-2|CD166_HUMAN Isoform 2 of CD166 antigen OS=Homo sapiens OX=9606 GN=ALCAM;sp|Q13740|CD166_HUMAN CD166 antigen OS=Homo sapiens OX=9606 GN=ALCAM PE=1 SV=2;sp|Q13740-4|CD166_HUMAN Isoform 4 of CD166 antigen OS=Homo sapiens OX=9606 GN=ALCAM 1 70.2724 2.43032E-08 154.36 75.809 70.272 1 147.961 5.71316E-08 147.96 1 85.6723 2.43032E-08 154.36 1 84.3518 0.00785882 84.352 1 70.2724 0.000879762 110.31 1 66.7076 0.0252691 66.708 1 61.4189 0.00983958 81.239 1 125.359 0.000151794 125.36 1 72.7049 0.0140449 72.705 1 M KSKTASKHVNKDLGNMEENKKLEENNHKTEA X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;Deamidation (NQ);X;X;GlyGly (K);X;X;X XXXXXXXPPPPPPPPPPPPPPXXXXXXXXXX HVNKDLGNM(1)EENKK HVNKDLGNM(70.27)EENKK 9 3 -0.75695 74213000 74213000 0 0 16.905 9619400 2329300 1889900 3929800 2978000 1815300 1744000 0 0 NaN 0.93594 NaN NaN NaN 0.95485 NaN NaN NaN 9619400 0 0 2329300 0 0 1889900 0 0 3929800 0 0 2978000 0 0 1815300 0 0 1744000 0 0 0 0 0 0 0 0 783 1260 555 555 579;2029;2030 664;2315;2316;2318 1833;1834;1835;6680;6681;6682;6683;6684;6685;6686;6687;6688;6689;6690;6693 1943;1944;1945;7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038;7041 6693 7041 20190902_JH_EV_Ubi_2 2998 6683 7031 20190821_JH_MUT_Ubi 2371 6683 7031 20190821_JH_MUT_Ubi 2371 sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN 321;321 sp|Q13740-2|CD166_HUMAN sp|Q13740-2|CD166_HUMAN sp|Q13740-2|CD166_HUMAN Isoform 2 of CD166 antigen OS=Homo sapiens OX=9606 GN=ALCAM;sp|Q13740|CD166_HUMAN CD166 antigen OS=Homo sapiens OX=9606 GN=ALCAM PE=1 SV=2 1 125.771 2.36511E-15 126.55 68.426 125.77 1 126.549 2.36511E-15 126.55 1 110.098 9.73337E-11 110.1 1 75.5393 0.000181147 75.539 1 125.771 2.57922E-15 125.77 1 M NATGDYKCSLIDKKSMIASTAITVHYLDLSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP SM(1)IASTAITVHYLDLSLNPSGEVTR SM(125.77)IASTAITVHYLDLSLNPSGEVTR 2 3 -1.1042 13260000 13260000 0 0 7.36 4083500 3758000 0 0 0 2633900 2784000 0 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 4083500 0 0 3758000 0 0 0 0 0 0 0 0 0 0 0 2633900 0 0 2784000 0 0 0 0 0 0 0 0 784 1260 321 321 4070 4620 12886;12887;12888;12889 13512;13513;13514;13515;13516 12889 13516 20190902_JH_MUT_Ubi_3 11928 12886 13512 20190821_JH_EV_Ubi 12284 12886 13512 20190821_JH_EV_Ubi 12284 sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN 2341;2361;2366 sp|Q13813-3|SPTN1_HUMAN sp|Q13813-3|SPTN1_HUMAN sp|Q13813-3|SPTN1_HUMAN Isoform 3 of Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1;sp|Q13813|SPTN1_HUMAN Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3;sp|Q13813-2|SPTN1_HUMAN Isoform 2 of 1 64.707 0.000307412 64.707 38.151 64.707 1 64.707 0.000307412 64.707 1 M QEFKSCLRSLGYDLPMVEEGEPDPEFEAILD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP SLGYDLPM(1)VEEGEPDPEFEAILDTVDPNR SLGYDLPM(64.71)VEEGEPDPEFEAILDTVDPNR 8 3 -0.080134 622800 622800 0 0 NaN 0 0 0 0 0 0 0 622800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 622800 0 0 0 0 0 785 1262 2341 2341 4016 4562 12710 13332 12710 13332 20190902_JH_WT_Ubi_2 16504 12710 13332 20190902_JH_WT_Ubi_2 16504 12710 13332 20190902_JH_WT_Ubi_2 16504 sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN 364;379 sp|Q13838|DX39B_HUMAN sp|Q13838|DX39B_HUMAN sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sapiens OX=9606 GN=DDX39B PE=1 SV=1;sp|Q13838-2|DX39B_HUMAN Isoform 2 of Spliceosome RNA helicase DDX39B OS=Homo sapiens OX=9606 GN=DDX39B 1 82.7066 0.00865993 82.707 58.113 82.707 1 53.3947 0.0149607 53.395 1 82.7066 0.00865993 82.707 1 M RGMDIERVNIAFNYDMPEDSDTYLHRVARAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX VNIAFNYDM(1)PEDSDTYLHR VNIAFNYDM(82.71)PEDSDTYLHR 9 3 0.093195 3121200 3121200 0 0 NaN 0 0 3121200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3121200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786 1264 364 364 4953 5623 15910;15911 16718;16719 15911 16719 20190902_JH_WT_Ubi_2 11519 15911 16719 20190902_JH_WT_Ubi_2 11519 15911 16719 20190902_JH_WT_Ubi_2 11519 sp|Q13868-3|EXOS2_HUMAN;sp|Q13868|EXOS2_HUMAN;sp|Q13868-2|EXOS2_HUMAN 5;5;5 sp|Q13868-3|EXOS2_HUMAN sp|Q13868-3|EXOS2_HUMAN sp|Q13868-3|EXOS2_HUMAN Isoform 3 of Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2;sp|Q13868|EXOS2_HUMAN Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2;sp|Q13868-2|EXOS2_HUMAN Isoform 2 of Exosome complex comp 0.998161 27.3457 0.00242237 101.6 13.904 101.6 0.998161 27.3457 0.00242237 101.6 M ___________MAMEMRLPVARKPLSERLGR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPXXXXXXXXX AM(0.002)EM(0.998)RLPVAR AM(-27.35)EM(27.35)RLPVAR 4 2 1.8812 1389600 1389600 0 0 NaN 0 0 1389600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1389600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 787 1265 5 5 226 261 771 841 771 841 20190821_JH_WT_Ubi 8423 771 841 20190821_JH_WT_Ubi 8423 771 841 20190821_JH_WT_Ubi 8423 sp|Q14008-2|CKAP5_HUMAN;sp|Q14008|CKAP5_HUMAN;sp|Q14008-3|CKAP5_HUMAN 931;931;931 sp|Q14008-2|CKAP5_HUMAN sp|Q14008-2|CKAP5_HUMAN sp|Q14008-2|CKAP5_HUMAN Isoform 2 of Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5;sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3;sp|Q14008-3|CKAP5_HUMAN Isoform 3 of Cytoskeleton-ass 1 76.533 0.00035364 76.533 61.189 76.533 1 76.533 0.00035364 76.533 1 M LVQQTLNILQQLAVAMGPNIKQHVKNLGIPI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX ILVQQTLNILQQLAVAM(1)GPNIK ILVQQTLNILQQLAVAM(76.53)GPNIK 17 3 -0.40818 2331700 2331700 0 0 NaN 0 0 2331700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2331700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 788 1266 931 931 2206 2514 7277 7655 7277 7655 20190821_JH_WT_Ubi 15800 7277 7655 20190821_JH_WT_Ubi 15800 7277 7655 20190821_JH_WT_Ubi 15800 sp|Q14103-4|HNRPD_HUMAN;sp|Q14103-3|HNRPD_HUMAN;sp|Q14103-2|HNRPD_HUMAN;sp|Q14103|HNRPD_HUMAN 196;215;196;215 sp|Q14103-4|HNRPD_HUMAN sp|Q14103-4|HNRPD_HUMAN sp|Q14103-4|HNRPD_HUMAN Isoform 4 of Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD;sp|Q14103-3|HNRPD_HUMAN Isoform 3 of Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD;sp|Q14103-2|HNRPD_HUMAN Isof 1 52.8619 0.0280825 52.862 17.825 52.862 1 52.8619 0.0280825 52.862 M EYFGGFGEVESIELPMDNKTNKRRGFCFITF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX EYFGGFGEVESIELPM(1)DNK EYFGGFGEVESIELPM(52.86)DNK 16 3 0.682 931430 931430 0 0 NaN 0 0 0 0 0 0 0 931430 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 931430 0 0 0 0 0 789 1270 196 196 1158 1306 3686 3880 3686 3880 20190902_JH_WT_Ubi_2 14636 3686 3880 20190902_JH_WT_Ubi_2 14636 3686 3880 20190902_JH_WT_Ubi_2 14636 sp|Q14118|DAG1_HUMAN 815 sp|Q14118|DAG1_HUMAN sp|Q14118|DAG1_HUMAN sp|Q14118|DAG1_HUMAN Dystroglycan OS=Homo sapiens OX=9606 GN=DAG1 PE=1 SV=2 1 111.087 1.58057E-25 140.4 105.08 111.09 1 111.087 9.84622E-13 111.09 1 140.399 1.58057E-25 140.4 1 115.774 6.44716E-16 115.77 1 116.918 5.44961E-16 116.92 1 M FADELDDSKPPPSSSMPLILQEEKAPLPPPE X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX KGVPIIFADELDDSKPPPSSSM(1)PLILQEEK KGVPIIFADELDDSKPPPSSSM(111.09)PLILQEEK 22 4 -0.9391 22423000 22423000 0 0 2.1955 6303000 0 0 2483800 6389000 0 1942200 0 0 2.0183 0 0 NaN NaN 0 NaN NaN NaN 6303000 0 0 0 0 0 0 0 0 2483800 0 0 6389000 0 0 0 0 0 1942200 0 0 0 0 0 0 0 0 790 1273 815 815 1749;2362 1989;2688 5578;5579;5580;5581;7771 5872;5873;5874;5875;8172 7771 8172 20190821_JH_EV_Ubi 11446 5579 5873 20190902_JH_EV_Ubi_2 11719 5579 5873 20190902_JH_EV_Ubi_2 11719 sp|Q14119|VEZF1_HUMAN 157 sp|Q14119|VEZF1_HUMAN sp|Q14119|VEZF1_HUMAN sp|Q14119|VEZF1_HUMAN Vascular endothelial zinc finger 1 OS=Homo sapiens OX=9606 GN=VEZF1 PE=1 SV=2 1 55.8007 6.93342E-05 55.801 31.818 55.801 1 55.8007 6.93342E-05 55.801 1 M SSSGTNPSSSASTTAMPVTQSVKKPSKPVKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX TSLVSTIAGILSTVTTSSSGTNPSSSASTTAM(1)PVTQSVK TSLVSTIAGILSTVTTSSSGTNPSSSASTTAM(55.8)PVTQSVK 32 3 2.0915 1021900 1021900 0 0 NaN 0 0 0 0 0 1021900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1021900 0 0 0 0 0 0 0 0 0 0 0 791 1274 157 157 4605 5228 14727 15476 14727 15476 20190902_JH_MUT_Ubi_2 15265 14727 15476 20190902_JH_MUT_Ubi_2 15265 14727 15476 20190902_JH_MUT_Ubi_2 15265 sp|Q14126|DSG2_HUMAN 740 sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN Desmoglein-2 OS=Homo sapiens OX=9606 GN=DSG2 PE=1 SV=2 1 79.461 7.18085E-06 96.391 72.349 79.461 1 85.9738 9.33216E-05 85.974 1 96.3913 7.18085E-06 96.391 1 91.7247 1.53428E-05 91.725 1 64.3311 0.00419636 64.331 1 69.7472 0.00245731 69.747 1 88.5476 2.08997E-05 88.548 1 64.8427 0.0040321 64.843 1 79.461 0.000452397 79.461 1 M LSGRATQFTGATGAIMTTETTKTARATGASR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPXXXXXX ATQFTGATGAIM(1)TTETTKTAR ATQFTGATGAIM(79.46)TTETTKTAR 12 3 -1.2711 29490000 29490000 0 0 2.2838 3474900 2792800 0 3546300 7304800 3959800 3418900 3420500 1572000 1.225 0.57352 NaN 3.6315 NaN NaN 0.80828 NaN NaN 3474900 0 0 2792800 0 0 0 0 0 3546300 0 0 7304800 0 0 3959800 0 0 3418900 0 0 3420500 0 0 1572000 0 0 792 1276 740 740 304 357 1023;1024;1025;1026;1027;1028;1029;1030 1107;1108;1109;1110;1111;1112;1113;1114 1030 1114 20190902_JH_WT_Ubi_3 7482 1026 1110 20190821_JH_MUT_Ubi 5353 1026 1110 20190821_JH_MUT_Ubi 5353 sp|Q14126|DSG2_HUMAN 711 sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN Desmoglein-2 OS=Homo sapiens OX=9606 GN=DSG2 PE=1 SV=2 1 65.9493 1.10615E-05 106.28 80.933 65.949 1 60.0927 0.0047752 60.093 1 106.275 1.10615E-05 106.28 1 65.1752 0.00247622 65.175 1 73.9176 0.000789751 73.918 1 65.9493 0.00232687 65.949 2 M MKGSSSASIVKGQHEMSEMDGRWEEHRSLLS X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX GSSSASIVKGQHEM(1)SEM(1)DGR GSSSASIVKGQHEM(65.95)SEM(65.95)DGR 14 3 0.15399 9599400 0 9599400 0 NaN 2072900 591700 0 3043700 0 1767000 2124100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2072900 0 0 591700 0 0 0 0 0 3043700 0 0 0 0 0 1767000 0 0 2124100 0 0 0 0 0 0 0 793 1276 711 711 1702 1940 5423;5424;5425;5426;5427 5708;5709;5710;5711;5712 5427 5712 20190902_JH_MUT_Ubi_3 3834 5425 5710 20190821_JH_MUT_Ubi 2760 5425 5710 20190821_JH_MUT_Ubi 2760 sp|Q14126|DSG2_HUMAN 714 sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN sp|Q14126|DSG2_HUMAN Desmoglein-2 OS=Homo sapiens OX=9606 GN=DSG2 PE=1 SV=2 1 65.9493 1.10615E-05 106.28 80.933 65.949 1 60.0927 0.0047752 60.093 1 106.275 1.10615E-05 106.28 1 65.1752 0.00247622 65.175 1 73.9176 0.000789751 73.918 1 65.9493 0.00232687 65.949 2 M SSSASIVKGQHEMSEMDGRWEEHRSLLSGRA X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX GSSSASIVKGQHEM(1)SEM(1)DGR GSSSASIVKGQHEM(65.95)SEM(65.95)DGR 17 3 0.15399 9599400 0 9599400 0 NaN 2072900 591700 0 3043700 0 1767000 2124100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2072900 0 0 591700 0 0 0 0 0 3043700 0 0 0 0 0 1767000 0 0 2124100 0 0 0 0 0 0 0 794 1276 714 714 1702 1940 5423;5424;5425;5426;5427 5708;5709;5710;5711;5712 5427 5712 20190902_JH_MUT_Ubi_3 3834 5425 5710 20190821_JH_MUT_Ubi 2760 5425 5710 20190821_JH_MUT_Ubi 2760 sp|Q14157-4|UBP2L_HUMAN;sp|Q14157-1|UBP2L_HUMAN;sp|Q14157-3|UBP2L_HUMAN;sp|Q14157|UBP2L_HUMAN;sp|Q14157-5|UBP2L_HUMAN 459;466;466;466;466 sp|Q14157-4|UBP2L_HUMAN sp|Q14157-4|UBP2L_HUMAN sp|Q14157-4|UBP2L_HUMAN Isoform 4 of Ubiquitin-associated protein 2-like OS=Homo sapiens OX=9606 GN=UBAP2L;sp|Q14157-1|UBP2L_HUMAN Isoform 2 of Ubiquitin-associated protein 2-like OS=Homo sapiens OX=9606 GN=UBAP2L;sp|Q14157-3|UBP2L_HUMAN Isoform 3 of Ubiqu 1 119.343 1.59415E-12 119.34 91.203 119.34 1 48.8516 0.0102971 48.852 1 119.343 1.59415E-12 119.34 1 M PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP STSAPQM(1)SPGSSDNQSSSPQPAQQK STSAPQM(119.34)SPGSSDNQSSSPQPAQQK 7 3 0.30623 2481100 2481100 0 0 NaN 510870 0 0 0 0 0 0 1970300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 510870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1970300 0 0 0 0 0 795 1281 459 459 4198 4768 13302;13303 13955;13956 13303 13956 20190902_JH_WT_Ubi_2 5398 13303 13956 20190902_JH_WT_Ubi_2 5398 13303 13956 20190902_JH_WT_Ubi_2 5398 sp|Q14204|DYHC1_HUMAN 1967 sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC1H1 PE=1 SV=5 1 54.1994 0.0137586 54.199 12.719 54.199 1 54.1994 0.0137586 54.199 1 M GAWGCFDEFNRLEERMLSAVSQQVQCIQEAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LSAVSQQVQCIQEALR M(54.2)LSAVSQQVQCIQEALR 1 2 -4.088 703160 703160 0 0 NaN 0 703160 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 703160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796 1284 1967 1967 2943 3345 9482 9982 9482 9982 20190821_JH_MUT_Ubi 10933 9482 9982 20190821_JH_MUT_Ubi 10933 9482 9982 20190821_JH_MUT_Ubi 10933 sp|Q14204|DYHC1_HUMAN 3068 sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC1H1 PE=1 SV=5 1 63.1281 3.15087E-05 114.21 51.831 63.128 1 114.208 3.15087E-05 114.21 1 63.1281 0.0156093 63.128 1 M WFTSQVIRNLHVVFTMNPSSEGLKDRAATSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPXXXXXXX NLHVVFTM(1)NPSSEGLK NLHVVFTM(63.13)NPSSEGLK 8 3 0.083669 11321000 11321000 0 0 NaN 0 0 6330400 0 0 0 0 0 4990900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6330400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4990900 0 0 797 1284 3068 3068 3132 3579 10070;10071 10607;10608 10071 10608 20190902_JH_WT_Ubi_3 8966 10070 10607 20190821_JH_WT_Ubi 7265 10070 10607 20190821_JH_WT_Ubi 7265 sp|Q14204|DYHC1_HUMAN 2221 sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC1H1 PE=1 SV=5 1 68.4013 0.000981604 68.401 46.284 68.401 1 46.1543 0.0156161 46.154 1 45.7374 0.0163134 45.737 1 68.4013 0.000981604 68.401 1 51.5676 0.00686036 51.568 1;2 M KVLQLYQITQINHGLMMVGPSGSGKSMAWRV X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX VLQLYQITQINHGLM(1)M(1)VGPSGSGK VLQLYQITQINHGLM(68.4)M(68.4)VGPSGSGK 15 3 -1.3414 15787000 1455800 14331000 0 NaN 5383800 1286200 7453800 1663400 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1455800 3928000 0 0 1286200 0 0 7453800 0 0 1663400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 798 1284 2221 2221 4922 5589;5590 15826;15827;15828;15829;15830 16630;16631;16632;16633;16634 15829 16633 20190821_JH_WT_Ubi 10662 15829 16633 20190821_JH_WT_Ubi 10662 15829 16633 20190821_JH_WT_Ubi 10662 sp|Q14204|DYHC1_HUMAN 2222 sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC1H1 PE=1 SV=5 1 68.4013 0.000981604 68.401 46.284 68.401 1 46.1543 0.0156161 46.154 1 45.7374 0.0163134 45.737 1 68.4013 0.000981604 68.401 1 51.5676 0.00686036 51.568 1;2 M VLQLYQITQINHGLMMVGPSGSGKSMAWRVL X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX VLQLYQITQINHGLM(1)M(1)VGPSGSGK VLQLYQITQINHGLM(68.4)M(68.4)VGPSGSGK 16 3 -1.3414 15787000 1455800 14331000 0 NaN 5383800 1286200 7453800 1663400 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1455800 3928000 0 0 1286200 0 0 7453800 0 0 1663400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799 1284 2222 2222 4922 5589;5590 15826;15827;15828;15829;15830 16630;16631;16632;16633;16634 15829 16633 20190821_JH_WT_Ubi 10662 15829 16633 20190821_JH_WT_Ubi 10662 15829 16633 20190821_JH_WT_Ubi 10662 sp|Q14204|DYHC1_HUMAN 505 sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC1H1 PE=1 SV=5 1 142.544 1.20289E-30 170.02 124.58 142.54 1 170.019 1.20289E-30 170.02 1 126.549 7.43574E-12 126.55 1 142.544 1.42446E-16 142.54 1 M AVAQQNQGEVPEPQDMKVAEVLFDAADANAI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX VLRPQVTAVAQQNQGEVPEPQDM(1)K VLRPQVTAVAQQNQGEVPEPQDM(142.54)K 23 3 -0.41187 11996000 11996000 0 0 10.252 0 0 3998900 0 0 0 0 3406300 4590800 NaN NaN 3.4177 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3998900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3406300 0 0 4590800 0 0 800 1284 505 505 4925 5593 15837;15838;15839 16643;16644;16645 15839 16645 20190902_JH_WT_Ubi_3 8267 15837 16643 20190821_JH_WT_Ubi 6589 15837 16643 20190821_JH_WT_Ubi 6589 sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN 411;448;411 sp|Q14247-3|SRC8_HUMAN sp|Q14247-3|SRC8_HUMAN sp|Q14247-3|SRC8_HUMAN Isoform 3 of Src substrate cortactin OS=Homo sapiens OX=9606 GN=CTTN;sp|Q14247|SRC8_HUMAN Src substrate cortactin OS=Homo sapiens OX=9606 GN=CTTN PE=1 SV=2;sp|Q14247-2|SRC8_HUMAN Isoform 2 of Src substrate cortactin OS=Homo sapiens O 1 66.8738 0.00323461 66.874 40.092 66.874 1 66.8738 0.00323461 66.874 1 M YRGPVSGTEPEPVYSMEAADYREASSQQGLA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX GPVSGTEPEPVYSM(1)EAADYR GPVSGTEPEPVYSM(66.87)EAADYR 14 3 -0.36733 1122900 1122900 0 0 NaN 0 0 0 0 0 0 0 1122900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1122900 0 0 0 0 0 801 1287 411 411 1658 1888 5301 5582 5301 5582 20190902_JH_WT_Ubi_2 9891 5301 5582 20190902_JH_WT_Ubi_2 9891 5301 5582 20190902_JH_WT_Ubi_2 9891 sp|Q14254|FLOT2_HUMAN 78 sp|Q14254|FLOT2_HUMAN sp|Q14254|FLOT2_HUMAN sp|Q14254|FLOT2_HUMAN Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2 1 80.7384 9.15825E-05 105.9 70.568 80.738 1 105.897 9.15825E-05 105.9 1 91.4006 0.000470345 91.401 1 93.4271 0.000398254 93.427 1 80.7384 0.00150398 80.738 1 M EGVALTVTGVAQVKIMTEKELLAVACEQFLG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP IM(1)TEKELLAVACEQFLGK IM(80.74)TEKELLAVACEQFLGK 2 3 -1.8333 9030300 9030300 0 0 2.9325 4506300 0 0 1348900 1580200 1594900 0 0 0 2.077 NaN NaN NaN NaN 1.7531 NaN NaN NaN 4506300 0 0 0 0 0 0 0 0 1348900 0 0 1580200 0 0 1594900 0 0 0 0 0 0 0 0 0 0 0 802 1288 78 78 2212 2520 7292;7293;7294;7295 7670;7671;7672;7673 7295 7673 20190902_JH_MUT_Ubi_2 13152 7292 7670 20190821_JH_EV_Ubi 12306 7292 7670 20190821_JH_EV_Ubi 12306 sp|Q14257|RCN2_HUMAN;sp|Q14257-2|RCN2_HUMAN 99;99 sp|Q14257|RCN2_HUMAN sp|Q14257|RCN2_HUMAN sp|Q14257|RCN2_HUMAN Reticulocalbin-2 OS=Homo sapiens OX=9606 GN=RCN2 PE=1 SV=1;sp|Q14257-2|RCN2_HUMAN Isoform 2 of Reticulocalbin-2 OS=Homo sapiens OX=9606 GN=RCN2 1 81.5944 0.00329678 81.594 51.862 81.594 1 72.4463 0.00743644 72.446 1 81.5944 0.00329678 81.594 1 M SELSSWIQMSFKHYAMQEAKQQFVEYDKNSD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPXXX HYAM(1)QEAKQQFVEYDK HYAM(81.59)QEAKQQFVEYDK 4 3 -0.37423 5448100 5448100 0 0 1.0623 0 0 0 0 0 3607700 1840400 0 0 NaN 0 NaN NaN NaN 2.0336 0.93796 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3607700 0 0 1840400 0 0 0 0 0 0 0 0 803 1289 99 99 2046 2339 6790;6791 7144;7145 6791 7145 20190902_JH_MUT_Ubi_3 5406 6791 7145 20190902_JH_MUT_Ubi_3 5406 6791 7145 20190902_JH_MUT_Ubi_3 5406 sp|Q14258|TRI25_HUMAN 248 sp|Q14258|TRI25_HUMAN sp|Q14258|TRI25_HUMAN sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens OX=9606 GN=TRIM25 PE=1 SV=2 1 153.946 6.42921E-17 153.95 74.04 153.95 1 153.946 6.42921E-17 153.95 1 M TANRKVEQLQQEYTEMKALLDASETTSTRKI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPXXXXXXXXXXXXXX VEQLQQEYTEM(1)K VEQLQQEYTEM(153.95)K 11 2 1.2847 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 804 1290 248 248 4799 5444 15391 16165 15391 16165 20190902_JH_WT_Ubi_2 7307 15391 16165 20190902_JH_WT_Ubi_2 7307 15391 16165 20190902_JH_WT_Ubi_2 7307 sp|Q14444-2|CAPR1_HUMAN;sp|Q14444|CAPR1_HUMAN 54;54 sp|Q14444-2|CAPR1_HUMAN sp|Q14444-2|CAPR1_HUMAN sp|Q14444-2|CAPR1_HUMAN Isoform 2 of Caprin-1 OS=Homo sapiens OX=9606 GN=CAPRIN1;sp|Q14444|CAPR1_HUMAN Caprin-1 OS=Homo sapiens OX=9606 GN=CAPRIN1 PE=1 SV=2 1 64.4049 3.13168E-06 64.405 38.957 64.405 1 57.4882 1.65203E-05 57.488 1 64.4049 3.13168E-06 64.405 1 M SQHPATGTGAVQTEAMKQILGVIDKKLRNLE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAM(1)K SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAM(64.4)K 41 3 -1.4216 1811900 1811900 0 0 NaN 648940 0 1162900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 648940 0 0 0 0 0 1162900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 805 1293 54 54 4159 4726 13184;13185 13827;13828 13185 13828 20190821_JH_WT_Ubi 5465 13185 13828 20190821_JH_WT_Ubi 5465 13185 13828 20190821_JH_WT_Ubi 5465 sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN 1;1;1 sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN Isoform 3 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498-2|RBM39_HUMAN Isoform 2 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens OX=9606 G 0.999743 35.9036 0.0104559 47.754 14.829 47.754 0.999743 35.9036 0.0104559 47.754 1 M _______________MADDIDIEAMLEAPYK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ADDIDIEAMLEAPYKKDENK M(35.9)ADDIDIEAM(-35.9)LEAPYKKDENK 1 3 -3.7063 5247900 5247900 0 0 NaN 0 0 5247900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 5247900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 806 1294 1 1 2874 3259 9248 9733 9248 9733 20190821_JH_WT_Ubi 10044 9248 9733 20190821_JH_WT_Ubi 10044 9248 9733 20190821_JH_WT_Ubi 10044 sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN 478;494;500 sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN Isoform 3 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498-2|RBM39_HUMAN Isoform 2 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens OX=9606 G 1 83.7545 9.53018E-06 83.755 60.135 83.755 1 71.297 0.00010157 71.297 1 75.5294 3.11421E-05 75.529 1 45.6664 0.0069964 45.666 1 54.6747 0.0011082 54.675 1 83.7545 9.53018E-06 83.755 2 M IAAVNALHGRWFAGKMITAAYVPLPTYHNLF X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ITAAYVPLPTYHNLFPDSM(1)TATQLLVPSR M(83.75)ITAAYVPLPTYHNLFPDSM(83.75)TATQLLVPSR 1 3 -1.1368 8446600 0 8446600 0 NaN 0 1933300 2091400 0 0 1377500 1071800 0 1972500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1933300 0 0 2091400 0 0 0 0 0 0 0 0 1377500 0 0 1071800 0 0 0 0 0 1972500 0 807 1294 478 478 2924 3320;3321 9412;9413;9414;9415;9416 9906;9907;9908;9909;9910;9911 9416 9911 20190902_JH_WT_Ubi_3 14954 9416 9911 20190902_JH_WT_Ubi_3 14954 9416 9911 20190902_JH_WT_Ubi_3 14954 sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN 497;513;519 sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN sp|Q14498-3|RBM39_HUMAN Isoform 3 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498-2|RBM39_HUMAN Isoform 2 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens OX=9606 G 1 83.7545 9.53018E-06 83.755 60.135 83.755 1 71.297 0.00010157 71.297 1 75.5294 3.11421E-05 75.529 1 45.6664 0.0069964 45.666 1 54.6747 0.0011082 54.675 1 83.7545 9.53018E-06 83.755 1;2 M AYVPLPTYHNLFPDSMTATQLLVPSRR____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX M(1)ITAAYVPLPTYHNLFPDSM(1)TATQLLVPSR M(83.75)ITAAYVPLPTYHNLFPDSM(83.75)TATQLLVPSR 20 3 -1.1368 10251000 1804700 8446600 0 NaN 0 1933300 3896100 0 0 1377500 1071800 0 1972500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1933300 0 1804700 2091400 0 0 0 0 0 0 0 0 1377500 0 0 1071800 0 0 0 0 0 1972500 0 808 1294 497 497 2924 3320;3321 9412;9413;9414;9415;9416;9417 9906;9907;9908;9909;9910;9911;9912 9416 9911 20190902_JH_WT_Ubi_3 14954 9416 9911 20190902_JH_WT_Ubi_3 14954 9416 9911 20190902_JH_WT_Ubi_3 14954 sp|Q14573|ITPR3_HUMAN 2088 sp|Q14573|ITPR3_HUMAN sp|Q14573|ITPR3_HUMAN sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type 3 OS=Homo sapiens OX=9606 GN=ITPR3 PE=1 SV=2 1 89.7209 0.00214335 89.721 59.531 89.721 1 89.7209 0.00214335 89.721 2 M PVKRIQEEEAEGISSMLSLNNKQLSQMLKSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPXX IQEEEAEGISSM(1)LSLNNKQLSQM(1)LK IQEEEAEGISSM(89.72)LSLNNKQLSQM(89.72)LK 12 3 0.79073 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 809 1296 2088 2088 2236 2546 7350 7729 7350 7729 20190902_JH_WT_Ubi_3 10801 7350 7729 20190902_JH_WT_Ubi_3 10801 7350 7729 20190902_JH_WT_Ubi_3 10801 sp|Q14573|ITPR3_HUMAN 2099 sp|Q14573|ITPR3_HUMAN sp|Q14573|ITPR3_HUMAN sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type 3 OS=Homo sapiens OX=9606 GN=ITPR3 PE=1 SV=2 1 89.7209 0.00214335 89.721 59.531 89.721 1 89.7209 0.00214335 89.721 2 M GISSMLSLNNKQLSQMLKSSAPAQEEEEDPL X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX IQEEEAEGISSM(1)LSLNNKQLSQM(1)LK IQEEEAEGISSM(89.72)LSLNNKQLSQM(89.72)LK 23 3 0.79073 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 810 1296 2099 2099 2236 2546 7350 7729 7350 7729 20190902_JH_WT_Ubi_3 10801 7350 7729 20190902_JH_WT_Ubi_3 10801 7350 7729 20190902_JH_WT_Ubi_3 10801 sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN 482;464 sp|Q14677-3|EPN4_HUMAN sp|Q14677-3|EPN4_HUMAN sp|Q14677-3|EPN4_HUMAN Isoform 3 of Clathrin interactor 1 OS=Homo sapiens OX=9606 GN=CLINT1;sp|Q14677-2|EPN4_HUMAN Isoform 2 of Clathrin interactor 1 OS=Homo sapiens OX=9606 GN=CLINT1 1 51.2319 1.84071E-11 110.89 93.528 51.232 1 110.886 1.84071E-11 110.89 1 53.7765 0.00426355 53.777 1 63.2722 0.00102178 63.272 1 56.4516 8.34586E-05 106.44 1 51.2319 0.0179815 51.232 1 M TVLQKPNPLYNQNTDMVQKSVSKTLPSTWSD X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX SQPLQNVSTVLQKPNPLYNQNTDM(1)VQK SQPLQNVSTVLQKPNPLYNQNTDM(51.23)VQK 24 3 -1.8519 13218000 13218000 0 0 13.202 0 2644100 3147000 0 0 2631000 2880400 0 0 NaN NaN NaN NaN NaN 2.6277 NaN NaN NaN 0 0 0 2644100 0 0 3147000 0 0 0 0 0 0 0 0 2631000 0 0 2880400 0 0 0 0 0 0 0 0 811 1299 482 482 3484;4130 3976;4693 11213;13096;13097;13098;13099;13100 11781;13733;13734;13735;13736;13737 13100 13737 20190902_JH_WT_Ubi_2 11528 13096 13733 20190821_JH_MUT_Ubi 9180 13096 13733 20190821_JH_MUT_Ubi 9180 sp|Q14678-2|KANK1_HUMAN;sp|Q14678|KANK1_HUMAN 888;1046 sp|Q14678-2|KANK1_HUMAN sp|Q14678-2|KANK1_HUMAN sp|Q14678-2|KANK1_HUMAN Isoform 2 of KN motif and ankyrin repeat domain-containing protein 1 OS=Homo sapiens OX=9606 GN=KANK1;sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-containing protein 1 OS=Homo sapiens OX=9606 GN=KANK1 PE=1 SV=3 1 51.9386 0.00244373 85.163 54.094 51.939 1 69.2576 0.00953677 69.258 1 84.7534 0.00255183 84.753 1 85.1626 0.00244373 85.163 1 64.3937 0.01316 64.394 1 51.9386 0.0284079 51.939 1 M PLEEEEEEEDEDTRGMAEGHHAVNIEGLKSA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX GM(1)AEGHHAVNIEGLK GM(51.94)AEGHHAVNIEGLK 2 3 -0.50864 28469000 28469000 0 0 7.7129 0 3038600 4397300 0 0 7619800 7334600 6078700 0 NaN NaN NaN NaN NaN 2.0644 NaN NaN NaN 0 0 0 3038600 0 0 4397300 0 0 0 0 0 0 0 0 7619800 0 0 7334600 0 0 6078700 0 0 0 0 0 812 1300 888 888 1622 1847 5197;5198;5199;5200;5201 5471;5472;5473;5474;5475;5476 5201 5476 20190902_JH_WT_Ubi_2 5801 5198 5472 20190902_JH_MUT_Ubi_2 4865 5198 5472 20190902_JH_MUT_Ubi_2 4865 sp|Q14696|MESD_HUMAN 116 sp|Q14696|MESD_HUMAN sp|Q14696|MESD_HUMAN sp|Q14696|MESD_HUMAN LRP chaperone MESD OS=Homo sapiens OX=9606 GN=MESD PE=1 SV=2 0.713769 3.96842 0.00226262 94.402 66.538 94.402 0.713769 3.96842 0.00226262 94.402 1 M PESILKMTKKGKTLMMFVTVSGSPTEKETEE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPXXXX TLM(0.286)M(0.714)FVTVSGSPTEK TLM(-3.97)M(3.97)FVTVSGSPTEK 4 2 3.3129 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 813 1303 116 116 4485 5087 14230 14935 14230 14935 20190902_JH_WT_Ubi_2 12227 14230 14935 20190902_JH_WT_Ubi_2 12227 14230 14935 20190902_JH_WT_Ubi_2 12227 sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN 581;603 sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB PE=1 SV=3;sp|Q14697-2|GANAB_HUMAN Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB 1 47.7321 0.00610609 61.096 34.367 47.732 1 61.0959 0.00610609 61.096 1 47.7321 0.0194667 47.732 1 M WEHRDVHNIYGLYVHMATADGLRQRSGGMER X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPXXXXXXXX DVHNIYGLYVHM(1)ATADGLR DVHNIYGLYVHM(47.73)ATADGLR 12 4 1.2655 13573000 13573000 0 0 0.81563 0 0 0 0 0 0 0 5884900 7687800 NaN NaN 0 NaN NaN NaN NaN 1.7546 2.1878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5884900 0 0 7687800 0 0 814 1304 581 581 732 833 2323;2324 2451;2452 2324 2452 20190902_JH_WT_Ubi_3 10658 2323 2451 20190902_JH_WT_Ubi_2 11122 2323 2451 20190902_JH_WT_Ubi_2 11122 sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN 242;264 sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB PE=1 SV=3;sp|Q14697-2|GANAB_HUMAN Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB 1 47.478 0.00237359 53.751 32.696 47.478 1 47.616 0.010717 47.616 1 53.7513 0.00253192 53.751 0.997136 25.4172 0.00237359 50.029 1 47.478 0.0110023 47.478 1;2 M EETFKTHSDSKPYGPMSVGLDFSLPGMEHVY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP PYGPM(1)SVGLDFSLPGM(1)EHVYGIPEHADNLR PYGPM(47.48)SVGLDFSLPGM(47.48)EHVYGIPEHADNLR 5 4 0.48462 18491000 694880 17796000 0 NaN 0 2526500 7905500 0 0 694880 0 0 7363800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 2526500 0 0 7905500 0 0 0 0 0 0 0 694880 0 0 0 0 0 0 0 0 0 7363800 0 815 1304 242 242 3587 4090;4091 11547;11548;11549;11550 12124;12125;12126;12127 11549 12126 20190902_JH_WT_Ubi_3 12744 11548 12125 20190821_JH_WT_Ubi 11664 11550 12127 20190902_JH_MUT_Ubi_2 13579 sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN 253;275 sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN sp|Q14697|GANAB_HUMAN Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB PE=1 SV=3;sp|Q14697-2|GANAB_HUMAN Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB 1 47.478 0.00253192 53.751 32.696 47.478 1 47.616 0.010717 47.616 1 53.7513 0.00253192 53.751 1 47.478 0.0110023 47.478 2 M PYGPMSVGLDFSLPGMEHVYGIPEHADNLRL X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPX PYGPM(1)SVGLDFSLPGM(1)EHVYGIPEHADNLR PYGPM(47.48)SVGLDFSLPGM(47.48)EHVYGIPEHADNLR 16 4 0.48462 17796000 0 17796000 0 NaN 0 2526500 7905500 0 0 0 0 0 7363800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 2526500 0 0 7905500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7363800 0 816 1304 253 253 3587 4090;4091 11547;11548;11549 12124;12125;12126 11549 12126 20190902_JH_WT_Ubi_3 12744 11548 12125 20190821_JH_WT_Ubi 11664 11548 12125 20190821_JH_WT_Ubi 11664 sp|Q14764|MVP_HUMAN 851 sp|Q14764|MVP_HUMAN sp|Q14764|MVP_HUMAN sp|Q14764|MVP_HUMAN Major vault protein OS=Homo sapiens OX=9606 GN=MVP PE=1 SV=4 1 80.0667 3.11308E-18 122.67 104.72 80.067 1 112.904 6.36721E-17 112.9 1 122.666 3.11308E-18 122.67 1 101.873 1.06282E-11 101.87 1 80.0667 3.22851E-06 80.067 1 M STPINLFNTAFGLLGMGPEGQPLGRRVASGP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX STLITDGSTPINLFNTAFGLLGM(1)GPEGQPLGR STLITDGSTPINLFNTAFGLLGM(80.07)GPEGQPLGR 23 3 -0.95614 11492000 11492000 0 0 NaN 0 3185600 3361700 0 0 0 2221500 2723300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 3185600 0 0 3361700 0 0 0 0 0 0 0 0 0 0 0 2221500 0 0 2723300 0 0 0 0 0 817 1306 851 851 4192 4761 13281;13282;13283;13284 13932;13933;13934;13935;13936 13284 13936 20190902_JH_WT_Ubi_2 16771 13283 13934 20190821_JH_WT_Ubi 16278 13283 13934 20190821_JH_WT_Ubi 16278 sp|Q14839|CHD4_HUMAN;sp|Q14839-2|CHD4_HUMAN 1078;1078 sp|Q14839|CHD4_HUMAN sp|Q14839|CHD4_HUMAN sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2;sp|Q14839-2|CHD4_HUMAN Isoform 2 of Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 1 44.7342 0.0258128 44.734 24.915 44.734 1 44.7342 0.0258128 44.734 1 M KEGGHRVLIFSQMTKMLDLLEDFLEHEGYKY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LDLLEDFLEHEGYKYER M(44.73)LDLLEDFLEHEGYKYER 1 4 -0.40956 2237700 2237700 0 0 NaN 0 0 0 0 0 0 0 2237700 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2237700 0 0 0 0 0 818 1307 1078 1078 2935 3336 9463 9961 9463 9961 20190902_JH_WT_Ubi_2 14351 9463 9961 20190902_JH_WT_Ubi_2 14351 9463 9961 20190902_JH_WT_Ubi_2 14351 sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN 643;788 sp|Q14974-2|IMB1_HUMAN sp|Q14974-2|IMB1_HUMAN sp|Q14974-2|IMB1_HUMAN Isoform 2 of Importin subunit beta-1 OS=Homo sapiens OX=9606 GN=KPNB1;sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens OX=9606 GN=KPNB1 PE=1 SV=2 1 63.3098 0.0109687 63.31 27.653 63.31 1 63.3098 0.0109687 63.31 1 M VQGLKGDQENVHPDVMLVQPRVEFILSFIDH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX GDQENVHPDVM(1)LVQPR GDQENVHPDVM(63.31)LVQPR 11 3 1.6131 6049700 6049700 0 0 NaN 0 0 6049700 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6049700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 819 1311 643 643 1406 1601 4483 4709 4483 4709 20190821_JH_WT_Ubi 6498 4483 4709 20190821_JH_WT_Ubi 6498 4483 4709 20190821_JH_WT_Ubi 6498 sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN 697;842 sp|Q14974-2|IMB1_HUMAN sp|Q14974-2|IMB1_HUMAN sp|Q14974-2|IMB1_HUMAN Isoform 2 of Importin subunit beta-1 OS=Homo sapiens OX=9606 GN=KPNB1;sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens OX=9606 GN=KPNB1 PE=1 SV=2 1 65.8417 0.0243619 65.842 32.842 65.842 1 65.8417 0.0243619 65.842 1 M TAFGKDVLKLVEARPMIHELLTEGRRSKTNK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX PM(1)IHELLTEGR PM(65.84)IHELLTEGR 2 3 -2.056 637720 637720 0 0 NaN 0 0 0 637720 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 637720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 820 1311 697 697 3463 3949 11117 11682 11117 11682 20190902_JH_EV_Ubi_2 6524 11117 11682 20190902_JH_EV_Ubi_2 6524 11117 11682 20190902_JH_EV_Ubi_2 6524 sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN 316;326;351 sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 PE=1 SV=1;sp|Q15019-3|SEPT2_HUMAN Isoform 3 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2;sp|Q15019-2|SEPT2_HUMAN Isoform 2 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 1 76.3411 0.00348759 84.859 41.302 76.341 1 84.8591 0.00348759 84.859 1 76.3411 0.00651813 76.341 1 M SERLKRGGRKVENEDMNKDQILLEKEAELRR X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX KVENEDM(1)NKDQILLEK KVENEDM(76.34)NKDQILLEK 7 3 0.15935 4981100 4981100 0 0 NaN 0 0 0 0 0 0 0 3117900 1863200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3117900 0 0 1863200 0 0 821 1316 316 316 2473 2808 8053;8054 8465;8466 8054 8466 20190902_JH_WT_Ubi_3 6463 8053 8465 20190902_JH_WT_Ubi_2 6698 8053 8465 20190902_JH_WT_Ubi_2 6698 sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN 279;289;314 sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 PE=1 SV=1;sp|Q15019-3|SEPT2_HUMAN Isoform 3 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2;sp|Q15019-2|SEPT2_HUMAN Isoform 2 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 1 58.0822 0.0103668 58.082 31.167 58.082 1 58.0822 0.0103668 58.082 2 M EVENPEHNDFLKLRTMLITHMQDLQEVTQDL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP TM(1)LITHM(1)QDLQEVTQDLHYENFR TM(58.08)LITHM(58.08)QDLQEVTQDLHYENFR 2 4 1.6827 3739900 0 3739900 0 NaN 0 0 3739900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3739900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822 1316 279 279 4520 5134 14420 15158;15159 14420 15158 20190821_JH_WT_Ubi 9588 14420 15158 20190821_JH_WT_Ubi 9588 14420 15158 20190821_JH_WT_Ubi 9588 sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN 284;294;319 sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN sp|Q15019|SEPT2_HUMAN Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 PE=1 SV=1;sp|Q15019-3|SEPT2_HUMAN Isoform 3 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2;sp|Q15019-2|SEPT2_HUMAN Isoform 2 of Septin-2 OS=Homo sapiens OX=9606 GN=SEPT2 1 58.0822 0.0103668 58.082 31.167 58.082 1 58.0822 0.0103668 58.082 2 M EHNDFLKLRTMLITHMQDLQEVTQDLHYENF X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP TM(1)LITHM(1)QDLQEVTQDLHYENFR TM(58.08)LITHM(58.08)QDLQEVTQDLHYENFR 7 4 1.6827 3739900 0 3739900 0 NaN 0 0 3739900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3739900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 823 1316 284 284 4520 5134 14420 15158;15159 14420 15158 20190821_JH_WT_Ubi 9588 14420 15158 20190821_JH_WT_Ubi 9588 14420 15158 20190821_JH_WT_Ubi 9588 sp|Q15043-2|S39AE_HUMAN;sp|Q15043-3|S39AE_HUMAN;sp|Q15043|S39AE_HUMAN 274;274;274 sp|Q15043-2|S39AE_HUMAN sp|Q15043-2|S39AE_HUMAN sp|Q15043-2|S39AE_HUMAN Isoform 2 of Zinc transporter ZIP14 OS=Homo sapiens OX=9606 GN=SLC39A14;sp|Q15043-3|S39AE_HUMAN Isoform 3 of Zinc transporter ZIP14 OS=Homo sapiens OX=9606 GN=SLC39A14;sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens OX= 1 73.6546 0.000137083 73.655 54.69 73.655 1 63.8932 0.000171578 63.893 1 43.0677 0.00727481 43.068 1 51.0523 0.0012685 51.052 1 66.5454 0.000137083 66.545 1 42.3474 0.00759963 42.347 1 73.6546 0.0015671 73.655 2 M ASESLPSKKDQEEGVMEKLQNGDLDHMIPQH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP DQEEGVM(1)EKLQNGDLDHM(1)IPQHCSSELDGK DQEEGVM(73.65)EKLQNGDLDHM(73.65)IPQHCSSELDGK 7 5 0.15991 42840000 0 42840000 0 NaN 0 973890 6259700 7832900 4238100 0 0 11935000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 973890 0 0 6259700 0 0 7832900 0 0 4238100 0 0 0 0 0 0 0 0 11935000 0 0 0 0 824 1320 274 274 656;2327 751;2647 2057;2058;2059;2060;2061;2062 2181;2182;2183;2184;2185;2186 2062 2186 20190902_JH_WT_Ubi_3 8622 2062 2186 20190902_JH_WT_Ubi_3 8622 2058 2182 20190902_JH_EV_Ubi_3 7453 sp|Q15043-2|S39AE_HUMAN;sp|Q15043-3|S39AE_HUMAN;sp|Q15043|S39AE_HUMAN 285;285;285 sp|Q15043-2|S39AE_HUMAN sp|Q15043-2|S39AE_HUMAN sp|Q15043-2|S39AE_HUMAN Isoform 2 of Zinc transporter ZIP14 OS=Homo sapiens OX=9606 GN=SLC39A14;sp|Q15043-3|S39AE_HUMAN Isoform 3 of Zinc transporter ZIP14 OS=Homo sapiens OX=9606 GN=SLC39A14;sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens OX= 1 73.6546 0.000137083 73.655 54.69 73.655 1 63.8932 0.000171578 63.893 1 43.0677 0.00727481 43.068 1 51.0523 0.0012685 51.052 1 66.5454 0.000137083 66.545 1 42.3474 0.00759963 42.347 1 73.6546 0.0015671 73.655 1;2 M EEGVMEKLQNGDLDHMIPQHCSSELDGKAPM X;X;X;X;Oxidation (M);X;GlyGly (K);X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX DQEEGVM(1)EKLQNGDLDHM(1)IPQHCSSELDGK DQEEGVM(73.65)EKLQNGDLDHM(73.65)IPQHCSSELDGK 18 5 0.15991 42840000 0 42840000 0 NaN 0 973890 6259700 7832900 4238100 0 0 11935000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 973890 0 0 6259700 0 0 7832900 0 0 4238100 0 0 0 0 0 0 0 0 11935000 0 0 0 0 825 1320 285 285 656;2327 751;2647 2057;2058;2059;2060;2061;2062;7651 2181;2182;2183;2184;2185;2186;8048 2062 2186 20190902_JH_WT_Ubi_3 8622 2062 2186 20190902_JH_WT_Ubi_3 8622 2058 2182 20190902_JH_EV_Ubi_3 7453 sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN 469;497 sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS PE=1 SV=3;sp|Q15046-2|SYK_HUMAN Isoform Mitochondrial of Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS 1 63.1577 0.000447554 63.158 42.738 63.158 1 63.1577 0.000447554 63.158 1 M VTCINPTFICDHPQIMSPLAKWHRSKEGLTE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX LVGEFLEVTCINPTFICDHPQIM(1)SPLAK LVGEFLEVTCINPTFICDHPQIM(63.16)SPLAK 23 3 0.40559 1566800 1566800 0 0 NaN 0 0 1566800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1566800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826 1321 469 469 2839 3221 9160 9641 9160 9641 20190821_JH_WT_Ubi 14503 9160 9641 20190821_JH_WT_Ubi 14503 9160 9641 20190821_JH_WT_Ubi 14503 sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN 292;320 sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS PE=1 SV=3;sp|Q15046-2|SYK_HUMAN Isoform Mitochondrial of Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS 1 75.1019 0.00326364 75.102 20.204 75.102 1 75.1019 0.00326364 75.102 2 M GAVAKPFITYHNELDMNLYMRIAPELYHKML X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPXXXXXXXXXX PFITYHNELDM(1)NLYM(1)R PFITYHNELDM(75.1)NLYM(75.1)R 11 3 -0.99948 3159400 0 3159400 0 NaN 0 0 0 0 0 0 0 3159400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3159400 0 0 0 0 827 1321 292 292 3334 3807 10682 11240 10682 11240 20190902_JH_WT_Ubi_2 11025 10682 11240 20190902_JH_WT_Ubi_2 11025 10682 11240 20190902_JH_WT_Ubi_2 11025 sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN 296;324 sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS PE=1 SV=3;sp|Q15046-2|SYK_HUMAN Isoform Mitochondrial of Lysine--tRNA ligase OS=Homo sapiens OX=9606 GN=KARS 1 75.1019 0.00326364 75.102 20.204 75.102 1 75.1019 0.00326364 75.102 2 M KPFITYHNELDMNLYMRIAPELYHKMLVVGG X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX PFITYHNELDM(1)NLYM(1)R PFITYHNELDM(75.1)NLYM(75.1)R 15 3 -0.99948 3159400 0 3159400 0 NaN 0 0 0 0 0 0 0 3159400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3159400 0 0 0 0 828 1321 296 296 3334 3807 10682 11240 10682 11240 20190902_JH_WT_Ubi_2 11025 10682 11240 20190902_JH_WT_Ubi_2 11025 10682 11240 20190902_JH_WT_Ubi_2 11025 sp|Q15047-2|SETB1_HUMAN;sp|Q15047-3|SETB1_HUMAN;sp|Q15047|SETB1_HUMAN 51;51;51 sp|Q15047-2|SETB1_HUMAN sp|Q15047-2|SETB1_HUMAN sp|Q15047-2|SETB1_HUMAN Isoform 2 of Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens OX=9606 GN=SETDB1;sp|Q15047-3|SETB1_HUMAN Isoform 3 of Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens OX=9606 GN=SETDB1;sp|Q15047|SETB1_HUMAN Histone- 1 91.9001 0.0091534 91.9 32.919 91.9 1 91.9001 0.0091534 91.9 1 M SMEELRHFIDEELEKMDCVQQRKKQLAELET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPXXXXXXX M(1)DCVQQRKK M(91.9)DCVQQRKK 1 2 -0.78467 1015100 1015100 0 0 NaN 0 0 0 0 1015100 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1015100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 829 1322 51 51 2882 3271 9283 9769 9283 9769 20190902_JH_EV_Ubi_3 8599 9283 9769 20190902_JH_EV_Ubi_3 8599 9283 9769 20190902_JH_EV_Ubi_3 8599 sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN 3190;3021;3031;3039;3053;3053;3057;3076;3080 sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens OX=9606 GN=PLEC PE=1 SV=3;sp|Q15149-7|PLEC_HUMAN Isoform 7 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-8|PLEC_HUMAN Isoform 8 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-9|PLEC_HUMAN Isoform 9 1 41.609 0.0136637 41.609 16.005 41.609 1 41.609 0.0136637 41.609 1 M LSIYNALKKDLLPSDMAVALLEAQAGTGHII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP DLLPSDM(1)AVALLEAQAGTGHIIDPATSAR DLLPSDM(41.61)AVALLEAQAGTGHIIDPATSAR 7 3 -0.51742 7455100 7455100 0 0 0.76789 0 0 7455100 0 0 0 0 0 0 NaN NaN 0.88071 NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 7455100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 830 1332 3190 3190 582 667 1838 1948 1838 1948 20190821_JH_WT_Ubi 14750 1838 1948 20190821_JH_WT_Ubi 14750 1838 1948 20190821_JH_WT_Ubi 14750 sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN 1027;858;868;876;890;890;894;913;917 sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens OX=9606 GN=PLEC PE=1 SV=3;sp|Q15149-7|PLEC_HUMAN Isoform 7 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-8|PLEC_HUMAN Isoform 8 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-9|PLEC_HUMAN Isoform 9 1 105.501 4.75099E-07 119.48 71.722 105.5 1 61.957 0.0044357 61.957 1 63.3916 0.00342861 63.392 1 96.562 4.74128E-05 96.562 1 45.4364 0.0218206 45.436 1 119.476 4.75099E-07 119.48 1 105.501 1.53229E-05 105.5 1 M QHQALVTLWHQLHVDMKSLLAWQSLRRDVQL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX LEAQHQALVTLWHQLHVDM(1)K LEAQHQALVTLWHQLHVDM(105.5)K 19 4 -0.57654 183230000 183230000 0 0 1.5943 11029000 10416000 96191000 0 0 9699000 0 26971000 28920000 8.7068 3.2081 0.95904 NaN NaN 7.1041 NaN 5.1113 8.3376 11029000 0 0 10416000 0 0 96191000 0 0 0 0 0 0 0 0 9699000 0 0 0 0 0 26971000 0 0 28920000 0 0 831 1332 1027 1027 2546 2891 8266;8267;8268;8269;8270;8271 8690;8691;8692;8693;8694;8695 8271 8695 20190902_JH_WT_Ubi_3 10785 8270 8694 20190902_JH_WT_Ubi_2 11342 8270 8694 20190902_JH_WT_Ubi_2 11342 sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN 2613;2444;2454;2462;2476;2476;2480;2499;2503 sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens OX=9606 GN=PLEC PE=1 SV=3;sp|Q15149-7|PLEC_HUMAN Isoform 7 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-8|PLEC_HUMAN Isoform 8 of Plectin OS=Homo sapiens OX=9606 GN=PLEC;sp|Q15149-9|PLEC_HUMAN Isoform 9 1 176.766 4.21039E-44 176.77 140.55 176.77 1 77.1688 8.73824E-05 77.169 1 139.789 1.9005E-20 139.79 1 176.766 4.21039E-44 176.77 1 M KLQQEAKLLQLKSEEMQTVQQEQLLQETQAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP SEEM(1)QTVQQEQLLQETQALQQSFLSEK SEEM(176.77)QTVQQEQLLQETQALQQSFLSEK 4 3 -0.27139 7786600 7786600 0 0 2.4955 759590 0 4832900 0 0 0 0 2194200 0 NaN NaN 1.5489 NaN NaN NaN NaN NaN NaN 759590 0 0 0 0 0 4832900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2194200 0 0 0 0 0 832 1332 2613 2613 3880 4405 12273;12274;12275 12871;12872;12873 12275 12873 20190902_JH_WT_Ubi_2 15416 12275 12873 20190902_JH_WT_Ubi_2 15416 12275 12873 20190902_JH_WT_Ubi_2 15416 sp|Q15154-4|PCM1_HUMAN;sp|Q15154-2|PCM1_HUMAN;sp|Q15154-5|PCM1_HUMAN;sp|Q15154|PCM1_HUMAN 1178;1177;1177;1177 sp|Q15154-4|PCM1_HUMAN sp|Q15154-4|PCM1_HUMAN sp|Q15154-4|PCM1_HUMAN Isoform 4 of Pericentriolar material 1 protein OS=Homo sapiens OX=9606 GN=PCM1;sp|Q15154-2|PCM1_HUMAN Isoform 2 of Pericentriolar material 1 protein OS=Homo sapiens OX=9606 GN=PCM1;sp|Q15154-5|PCM1_HUMAN Isoform 5 of Pericentriolar m 1 67.5792 0.00432665 67.579 32.651 67.579 1 64.1996 0.00572829 64.2 1 67.5792 0.00432665 67.579 1 M QQQPLAQNSSGKTEYMAFPKPFESSSSIGAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP TEYM(1)AFPKPFESSSSIGAEK TEYM(67.58)AFPKPFESSSSIGAEK 4 3 0.66745 4098500 4098500 0 0 NaN 0 0 0 0 0 1374800 0 0 2723600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1374800 0 0 0 0 0 0 0 0 2723600 0 0 833 1333 1178 1178 4331 4913 13706;13707 14377;14378 13707 14378 20190902_JH_WT_Ubi_3 9995 13707 14378 20190902_JH_WT_Ubi_3 9995 13707 14378 20190902_JH_WT_Ubi_3 9995 sp|Q15181|IPYR_HUMAN 46 sp|Q15181|IPYR_HUMAN sp|Q15181|IPYR_HUMAN sp|Q15181|IPYR_HUMAN Inorganic pyrophosphatase OS=Homo sapiens OX=9606 GN=PPA1 PE=1 SV=2 1 88.441 0.00235122 105.4 58.691 88.441 1 91.8546 0.00704936 91.855 1 105.397 0.00235122 105.4 1 78.6526 0.0132645 78.653 1 89.5479 0.008109 89.548 1 68.0687 0.0221219 68.069 1 88.441 0.00861748 88.441 1 M PFHDIPIYADKDVFHMVVEVPRWSNAKMEIA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX DVFHM(1)VVEVPR DVFHM(88.44)VVEVPR 5 3 -1.9875 24366000 24366000 0 0 3.3605 0 0 4366300 0 1783100 3033100 1925300 5091300 8167400 NaN NaN 0.60218 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4366300 0 0 0 0 0 1783100 0 0 3033100 0 0 1925300 0 0 5091300 0 0 8167400 0 0 834 1334 46 46 728 827 2294;2295;2296;2297;2298;2299 2422;2423;2424;2425;2426;2427 2299 2427 20190902_JH_WT_Ubi_3 10444 2294 2422 20190902_JH_EV_Ubi_3 9203 2294 2422 20190902_JH_EV_Ubi_3 9203 sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN 352;441 sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN Isoform 2 of Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO;sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4 1 109.422 9.54106E-08 110.33 62.758 109.42 1 110.326 9.54106E-08 110.33 1 71.4342 0.0011171 71.434 1 102.068 8.09021E-07 102.07 1 109.422 1.7354E-07 109.42 1 M GLTPPTTERFGQAATMEGIGAIGGTPPAFNR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP FGQAATM(1)EGIGAIGGTPPAFNR FGQAATM(109.42)EGIGAIGGTPPAFNR 7 3 1.1741 12814000 12814000 0 0 7.991 0 0 0 1528800 1509300 0 0 4441300 5334700 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1528800 0 0 1509300 0 0 0 0 0 0 0 0 4441300 0 0 5334700 0 0 835 1337 352 352 1211 1365 3838;3839;3840;3841 4039;4040;4041;4042;4043 3841 4042 20190902_JH_WT_Ubi_3 11742 3838 4039 20190902_JH_EV_Ubi_2 10263 3838 4039 20190902_JH_EV_Ubi_2 10263 sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN 312;401 sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN Isoform 2 of Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO;sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4 1 51.9755 0.000134815 51.975 31.52 51.975 1 51.9755 0.000134815 51.975 3 M QMAMGGAMGINNRGAMPPAPVPAGTPAPPGP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GAM(1)PPAPVPAGTPAPPGPATM(1)M(1)PDGTLGLTPPTTER GAM(51.98)PPAPVPAGTPAPPGPATM(51.98)M(51.98)PDGTLGLTPPTTER 3 3 -1.0749 1430000 0 0 1430000 NaN 0 0 0 0 1430000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1430000 0 0 0 0 0 0 0 0 0 0 0 0 836 1337 312 312 1377 1569 4397 4621 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN 330;419 sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN Isoform 2 of Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO;sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4 1 51.9755 0.000134815 51.975 31.52 51.975 1 51.9755 0.000134815 51.975 3 M APVPAGTPAPPGPATMMPDGTLGLTPPTTER X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP GAM(1)PPAPVPAGTPAPPGPATM(1)M(1)PDGTLGLTPPTTER GAM(51.98)PPAPVPAGTPAPPGPATM(51.98)M(51.98)PDGTLGLTPPTTER 21 3 -1.0749 1430000 0 0 1430000 NaN 0 0 0 0 1430000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1430000 0 0 0 0 0 0 0 0 0 0 0 0 837 1337 330 330 1377 1569 4397 4621 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN 331;420 sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN sp|Q15233-2|NONO_HUMAN Isoform 2 of Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO;sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4 1 51.9755 0.000134815 51.975 31.52 51.975 1 51.9755 0.000134815 51.975 3 M PVPAGTPAPPGPATMMPDGTLGLTPPTTERF X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPX GAM(1)PPAPVPAGTPAPPGPATM(1)M(1)PDGTLGLTPPTTER GAM(51.98)PPAPVPAGTPAPPGPATM(51.98)M(51.98)PDGTLGLTPPTTER 22 3 -1.0749 1430000 0 0 1430000 NaN 0 0 0 0 1430000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1430000 0 0 0 0 0 0 0 0 0 0 0 0 838 1337 331 331 1377 1569 4397 4621 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 4397 4621 20190902_JH_EV_Ubi_3 10895 sp|Q15365|PCBP1_HUMAN;sp|P57721-2|PCBP3_HUMAN;sp|P57721-3|PCBP3_HUMAN;sp|P57721-5|PCBP3_HUMAN;sp|P57721-4|PCBP3_HUMAN;sp|P57721|PCBP3_HUMAN;sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN 137;169;169;169;169;169;137;137;137;137;137;137;137;137 sp|Q15365|PCBP1_HUMAN;sp|Q15366-7|PCBP2_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2;sp|P57721-2|PCBP3_HUMAN Isoform 2 of Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3;sp|P57721-3|PCBP3_HUMAN Isoform 3 of Poly(rC)-binding protein 3 OS= 1 87.6682 3.85616E-09 123.63 72.806 87.668 1 64.3463 0.00396865 64.346 1 81.4475 0.00460534 81.448 1 123.633 3.85616E-09 123.63 1 121.512 2.66113E-07 121.51 1 87.6682 0.000128653 87.668 1 M EIRESTGAQVQVAGDMLPNSTERAITIAGIP;EIRESTGAQVQVAGDMLPNSTERAITIAGVP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX ESTGAQVQVAGDM(1)LPNSTER ESTGAQVQVAGDM(87.67)LPNSTER 13 3 0.3766 14336000 14336000 0 0 NaN 0 0 2373900 0 1106600 0 0 4860300 3762200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2373900 0 0 0 0 0 1106600 0 0 0 0 0 0 0 0 4860300 0 0 3762200 0 0 839 1341;1342 137;137 137 1105 1245 3517;3518;3519;3520;3521 3697;3698;3699;3700;3701 3521 3701 20190902_JH_WT_Ubi_3 8608 3518 3698 20190902_JH_EV_Ubi_3 7411 3518 3698 20190902_JH_EV_Ubi_3 7411 sp|Q15365|PCBP1_HUMAN 87 sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2 1 60.5609 1.74149E-06 100.46 59.941 60.561 1 86.5392 8.63309E-05 86.539 1 100.455 1.74149E-06 100.46 1 60.5609 0.0129982 60.561 1 M FAMIIDKLEEDINSSMTNSTAASRPPVTLRL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX LEEDINSSM(1)TNSTAASRPPVTLR LEEDINSSM(60.56)TNSTAASRPPVTLR 9 3 0.41301 14215000 14215000 0 0 NaN 0 0 3137300 0 0 0 0 6881500 4196400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3137300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6881500 0 0 4196400 0 0 840 1341 87 87 2552 2898 8289;8290;8291 8713;8714;8715;8716 8291 8715 20190902_JH_WT_Ubi_3 8468 8290 8714 20190902_JH_WT_Ubi_2 8888 8290 8714 20190902_JH_WT_Ubi_2 8888 sp|Q15365|PCBP1_HUMAN 1 sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2 1 74.5373 0.00464829 74.537 16.752 74.537 1 74.5373 0.00464829 74.537 M _______________MDAGVTESGLNVTLTI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DAGVTESGLNVTLTIR M(74.54)DAGVTESGLNVTLTIR 1 2 -1.7224 1147800 1147800 0 0 NaN 0 0 1147800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1147800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 841 1341 1 1 2881 3270 9282 9768 9282 9768 20190821_JH_WT_Ubi 14076 9282 9768 20190821_JH_WT_Ubi 14076 9282 9768 20190821_JH_WT_Ubi 14076 sp|Q15365|PCBP1_HUMAN 308 sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2 1 108.489 3.26575E-09 131.84 83.431 108.49 1 131.835 3.26575E-09 131.84 1 106.666 4.49571E-05 106.67 1 108.489 2.91054E-05 108.49 1 M CIIGRQGANINEIRQMSGAQIKIANPVEGSS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP QM(1)SGAQIKIANPVEGSSGR QM(108.49)SGAQIKIANPVEGSSGR 2 3 0.72758 14044000 14044000 0 0 NaN 0 5182800 0 0 0 5034200 3827400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 5182800 0 0 0 0 0 0 0 0 0 0 0 5034200 0 0 3827400 0 0 0 0 0 0 0 0 842 1341 308 308 3675 4185 11733;11734;11735 12313;12314;12315 11735 12315 20190902_JH_MUT_Ubi_3 6344 11733 12313 20190821_JH_MUT_Ubi 5365 11733 12313 20190821_JH_MUT_Ubi 5365 sp|Q15365|PCBP1_HUMAN 179 sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2 1 147.752 3.61779E-22 147.75 108.55 147.75 1 90.9776 4.80623E-06 90.978 1 69.98 0.0010404 69.98 1 47.7283 0.0149592 47.728 1 125.771 1.22117E-11 125.77 1 147.752 3.61779E-22 147.75 2 M LVMLETLSQSPQGRVMTIPYQPMPASSPVIC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)TIPYQPM(1)PASSPVICAGGQDR VM(147.75)TIPYQPM(147.75)PASSPVICAGGQDR 2 3 -0.22403 17171000 0 17171000 0 NaN 0 0 3956100 1151900 1227400 0 0 5563900 5271500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3956100 0 0 1151900 0 0 1227400 0 0 0 0 0 0 0 0 5563900 0 0 5271500 0 843 1341 179 179 4945 5615 15894;15895;15896;15897;15898 16701;16702;16703;16704;16705;16706 15898 16706 20190902_JH_WT_Ubi_3 10937 15898 16706 20190902_JH_WT_Ubi_3 10937 15898 16706 20190902_JH_WT_Ubi_3 10937 sp|Q15365|PCBP1_HUMAN 186 sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2 1 147.752 3.61779E-22 147.75 108.55 147.75 1 90.9776 4.80623E-06 90.978 1 69.98 0.0010404 69.98 1 47.7283 0.0149592 47.728 1 125.771 1.22117E-11 125.77 1 147.752 3.61779E-22 147.75 2 M SQSPQGRVMTIPYQPMPASSPVICAGGQDRC X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX VM(1)TIPYQPM(1)PASSPVICAGGQDR VM(147.75)TIPYQPM(147.75)PASSPVICAGGQDR 9 3 -0.22403 17171000 0 17171000 0 NaN 0 0 3956100 1151900 1227400 0 0 5563900 5271500 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 3956100 0 0 1151900 0 0 1227400 0 0 0 0 0 0 0 0 5563900 0 0 5271500 0 844 1341 186 186 4945 5615 15894;15895;15896;15897;15898 16701;16702;16703;16704;16705;16706 15898 16706 20190902_JH_WT_Ubi_3 10937 15898 16706 20190902_JH_WT_Ubi_3 10937 15898 16706 20190902_JH_WT_Ubi_3 10937 sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN 87;87;87;87;87;87;87;87 sp|Q15366-7|PCBP2_HUMAN sp|Q15366-7|PCBP2_HUMAN sp|Q15366-7|PCBP2_HUMAN Isoform 7 of Poly(rC)-binding protein 2 OS=Homo sapiens OX=9606 GN=PCBP2;sp|Q15366-8|PCBP2_HUMAN Isoform 8 of Poly(rC)-binding protein 2 OS=Homo sapiens OX=9606 GN=PCBP2;sp|Q15366-4|PCBP2_HUMAN Isoform 4 of Poly(rC)-binding protein 1 42.6394 0.000336151 83.666 33.802 42.639 1 63.0443 0.00785781 63.044 1 83.6664 0.000336151 83.666 1 82.8588 0.000406378 82.859 1 42.6394 0.000974183 76.329 1 M FAMIIDKLEEDISSSMTNSTAASRPPVTLRL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX LEEDISSSM(1)TNSTAASRPPVTLR LEEDISSSM(42.64)TNSTAASRPPVTLR 9 3 2.274 18400000 18400000 0 0 6.8394 0 0 4901000 0 569640 0 0 6680100 6249700 NaN NaN 1.8217 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4901000 0 0 0 0 0 569640 0 0 0 0 0 0 0 0 6680100 0 0 6249700 0 0 845 1342 87 87 2553 2899;2901 8292;8293;8294;8295;8297 8717;8718;8719;8720;8722 8297 8722 20190902_JH_WT_Ubi_3 9181 8292 8717 20190902_JH_EV_Ubi_3 7415 8292 8717 20190902_JH_EV_Ubi_3 7415 sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN 269;273;282;286;312;313;316;317 sp|Q15366-7|PCBP2_HUMAN sp|Q15366-7|PCBP2_HUMAN sp|Q15366-7|PCBP2_HUMAN Isoform 7 of Poly(rC)-binding protein 2 OS=Homo sapiens OX=9606 GN=PCBP2;sp|Q15366-8|PCBP2_HUMAN Isoform 8 of Poly(rC)-binding protein 2 OS=Homo sapiens OX=9606 GN=PCBP2;sp|Q15366-4|PCBP2_HUMAN Isoform 4 of Poly(rC)-binding protein 1 49.9729 0.0280503 49.973 15.781 49.973 1 49.9729 0.0280503 49.973 1 M CIIGRQGAKINEIRQMSGAQIKIANPVEGST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP QM(1)SGAQIKIANPVEGSTDR QM(49.97)SGAQIKIANPVEGSTDR 2 3 -1.6249 884400 884400 0 0 NaN 0 884400 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 884400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 846 1342 269 269 3676 4186 11736 12316 11736 12316 20190821_JH_MUT_Ubi 5711 11736 12316 20190821_JH_MUT_Ubi 5711 11736 12316 20190821_JH_MUT_Ubi 5711 sp|Q15413-3|RYR3_HUMAN;sp|Q15413-2|RYR3_HUMAN;sp|Q15413|RYR3_HUMAN 2805;2805;2805 sp|Q15413-3|RYR3_HUMAN sp|Q15413-3|RYR3_HUMAN sp|Q15413-3|RYR3_HUMAN Isoform 3 of Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3;sp|Q15413-2|RYR3_HUMAN Isoform 2 of Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3;sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3 PE=1 0.999007 30.0184 0.0291025 41.76 15.556 41.76 0.999007 30.0184 0.0291025 41.76 2 M FLQVNGIIVSRGMKDMELDASSMEKRFAYKF X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX FLQVNGIIVSRGM(0.003)KDM(0.999)ELDASSM(0.998)EK FLQVNGIIVSRGM(-26.95)KDM(30.02)ELDASSM(26.95)EK 16 3 2.3982 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 847 1347 2805 2805 1251 1414 3966 4171 3966 4171 20190821_JH_WT_Ubi 15439 3966 4171 20190821_JH_WT_Ubi 15439 3966 4171 20190821_JH_WT_Ubi 15439 sp|Q15413-3|RYR3_HUMAN;sp|Q15413-2|RYR3_HUMAN;sp|Q15413|RYR3_HUMAN 2812;2812;2812 sp|Q15413-3|RYR3_HUMAN sp|Q15413-3|RYR3_HUMAN sp|Q15413-3|RYR3_HUMAN Isoform 3 of Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3;sp|Q15413-2|RYR3_HUMAN Isoform 2 of Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3;sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens OX=9606 GN=RYR3 PE=1 0.997988 26.9513 0.0291025 41.76 15.556 41.76 0.997988 26.9513 0.0291025 41.76 2 M IVSRGMKDMELDASSMEKRFAYKFLKKILKY X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX FLQVNGIIVSRGM(0.003)KDM(0.999)ELDASSM(0.998)EK FLQVNGIIVSRGM(-26.95)KDM(30.02)ELDASSM(26.95)EK 23 3 2.3982 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 848 1347 2812 2812 1251 1414 3966 4171 3966 4171 20190821_JH_WT_Ubi 15439 3966 4171 20190821_JH_WT_Ubi 15439 3966 4171 20190821_JH_WT_Ubi 15439 sp|Q15717|ELAV1_HUMAN;sp|Q15717-2|ELAV1_HUMAN 31;58 sp|Q15717|ELAV1_HUMAN sp|Q15717|ELAV1_HUMAN sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens OX=9606 GN=ELAVL1 PE=1 SV=2;sp|Q15717-2|ELAV1_HUMAN Isoform 2 of ELAV-like protein 1 OS=Homo sapiens OX=9606 GN=ELAVL1 1 50.8308 0.0199763 50.831 14.234 50.831 1 50.8308 0.0199763 50.831 1 M DIGRTNLIVNYLPQNMTQDELRSLFSSIGEV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPXXXXXXXXX TNLIVNYLPQNM(1)TQDELR TNLIVNYLPQNM(50.83)TQDELR 12 3 -1.0452 527090 527090 0 0 NaN 527090 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 527090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 849 1362 31 31 4530 5145 14457 15196 14457 15196 20190821_JH_EV_Ubi 11527 14457 15196 20190821_JH_EV_Ubi 11527 14457 15196 20190821_JH_EV_Ubi 11527 sp|Q15746-9|MYLK_HUMAN;sp|Q15746-11|MYLK_HUMAN;sp|Q15746-7|MYLK_HUMAN;sp|Q15746-4|MYLK_HUMAN;sp|Q15746-5|MYLK_HUMAN;sp|Q15746-2|MYLK_HUMAN;sp|Q15746-3|MYLK_HUMAN;sp|Q15746-6|MYLK_HUMAN;sp|Q15746|MYLK_HUMAN 84;362;362;1215;1284;1215;1284;1284;1284 sp|Q15746-9|MYLK_HUMAN sp|Q15746-9|MYLK_HUMAN sp|Q15746-9|MYLK_HUMAN Isoform 7 of Myosin light chain kinase, smooth muscle OS=Homo sapiens OX=9606 GN=MYLK;sp|Q15746-11|MYLK_HUMAN Isoform 9 of Myosin light chain kinase, smooth muscle OS=Homo sapiens OX=9606 GN=MYLK;sp|Q15746-7|MYLK_HUMAN Isoform 5 of M 1 43.3802 0.00485256 53.964 6.361 43.38 1 51.0443 0.00632218 51.044 1 52.0897 0.00557164 52.09 1 53.9639 0.00485256 53.964 1 41.4503 0.0219923 41.45 1 42.2894 0.0206218 42.289 1 43.3802 0.0188402 43.38 1 M CTWMKFRKQIQESEHMKVENSENGSKLTILA X;X;X;X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP QIQESEHM(1)KVENSENGSKLTILAAR QIQESEHM(43.38)KVENSENGSKLTILAAR 8 4 2.2859 52924000 52924000 0 0 NaN 0 4797500 0 15606000 14891000 7317600 3761300 0 6551100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 4797500 0 0 0 0 0 15606000 0 0 14891000 0 0 7317600 0 0 3761300 0 0 0 0 0 6551100 0 0 850 1363 84 84 3640 4149 11669;11670;11671;11672;11673;11674 12247;12248;12249;12250;12251;12252 11674 12252 20190902_JH_WT_Ubi_3 6436 11670 12248 20190902_JH_EV_Ubi_3 5299 11670 12248 20190902_JH_EV_Ubi_3 5299 sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN;sp|P62491-2|RB11A_HUMAN;sp|P62491|RB11A_HUMAN 120;120;120;120 sp|Q15907-2|RB11B_HUMAN sp|Q15907-2|RB11B_HUMAN sp|Q15907-2|RB11B_HUMAN Isoform 2 of Ras-related protein Rab-11B OS=Homo sapiens OX=9606 GN=RAB11B;sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens OX=9606 GN=RAB11B PE=1 SV=4;sp|P62491-2|RB11A_HUMAN Isoform 2 of Ras-related protein Rab-11 1 135.042 2.79161E-07 135.04 69.764 135.04 1 108.971 0.000237547 108.97 1 67.0952 0.0111476 67.095 1 135.042 2.79161E-07 135.04 1 M WLKELRDHADSNIVIMLVGNKSDLRHLRAVP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX DHADSNIVIM(1)LVGNK DHADSNIVIM(135.04)LVGNK 10 3 -0.42411 9125500 9125500 0 0 0.63182 0 0 4220500 0 1261100 0 0 0 3643900 NaN NaN 0.63315 0 NaN 0 0 0 1.218 0 0 0 0 0 0 4220500 0 0 0 0 0 1261100 0 0 0 0 0 0 0 0 0 0 0 3643900 0 0 851 1370 120 120 508 589 1651;1652;1653 1750;1751;1752;1753 1653 1753 20190902_JH_WT_Ubi_3 11209 1653 1753 20190902_JH_WT_Ubi_3 11209 1653 1753 20190902_JH_WT_Ubi_3 11209 sp|Q16531|DDB1_HUMAN;sp|Q16531-2|DDB1_HUMAN 1105;416 sp|Q16531|DDB1_HUMAN sp|Q16531|DDB1_HUMAN sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens OX=9606 GN=DDB1 PE=1 SV=1;sp|Q16531-2|DDB1_HUMAN Isoform 2 of DNA damage-binding protein 1 OS=Homo sapiens OX=9606 GN=DDB1 1 116.133 1.17468E-20 167.35 115.09 116.13 0.999964 44.4123 0.00579582 65.265 1 167.347 1.17468E-20 167.35 1 110.338 9.86396E-06 110.34 1 123.922 1.48386E-08 123.92 1 147.493 8.16821E-15 147.49 1 116.133 2.77454E-06 116.13 1;2 M DGDLIESFLDISRPKMQEVVANLQYDDGSGM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M) XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QEVVANLQYDDGSGM(1)KR M(116.13)QEVVANLQYDDGSGM(116.13)KR 1 3 -0.93525 46612000 11324000 35288000 0 9.3407 2135700 0 7007200 0 4687500 7941000 0 9843700 14997000 NaN NaN 1.8403 NaN NaN 6.7153 NaN NaN NaN 2135700 0 0 0 0 0 0 7007200 0 0 0 0 0 4687500 0 2549100 5392000 0 0 0 0 0 9843700 0 6639500 8357200 0 852 1374 1105 1105 2957 3362;3363 9509;9513;9517;9518;9519;9520;9521;9522 10009;10013;10017;10018;10019;10020;10021;10022 9522 10022 20190902_JH_WT_Ubi_3 7401 9520 10020 20190821_JH_WT_Ubi 5782 9520 10020 20190821_JH_WT_Ubi 5782 sp|Q16531|DDB1_HUMAN;sp|Q16531-2|DDB1_HUMAN 1120;431 sp|Q16531|DDB1_HUMAN sp|Q16531|DDB1_HUMAN sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens OX=9606 GN=DDB1 PE=1 SV=1;sp|Q16531-2|DDB1_HUMAN Isoform 2 of DNA damage-binding protein 1 OS=Homo sapiens OX=9606 GN=DDB1 1 116.133 1.17468E-20 167.35 115.09 116.13 1 77.6763 0.000338178 90.714 1 167.347 1.17468E-20 167.35 0.999999 58.9371 0.00478256 67.646 1 110.338 9.86396E-06 110.34 1 123.922 1.48386E-08 123.92 0.9995 33.0106 0.0129954 56.906 1 147.493 8.16821E-15 147.49 1 116.133 2.77454E-06 116.13 1;2 M MQEVVANLQYDDGSGMKREATADDLIKVVEE Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX M(1)QEVVANLQYDDGSGM(1)KR M(116.13)QEVVANLQYDDGSGM(116.13)KR 16 3 -0.93525 60687000 25399000 35288000 0 12.161 0 1852700 15623000 2220400 7288300 5392000 3375200 16578000 8357200 NaN NaN 4.1031 NaN NaN 4.5597 NaN NaN NaN 0 0 0 1852700 0 0 8616000 7007200 0 2220400 0 0 2600800 4687500 0 0 5392000 0 3375200 0 0 6734000 9843700 0 0 8357200 0 853 1374 1120 1120 2957 3362;3363 9510;9511;9512;9514;9515;9516;9518;9519;9520;9521;9522 10010;10011;10012;10014;10015;10016;10018;10019;10020;10021;10022 9522 10022 20190902_JH_WT_Ubi_3 7401 9520 10020 20190821_JH_WT_Ubi 5782 9520 10020 20190821_JH_WT_Ubi 5782 sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN 132;168 sp|Q16555-2|DPYL2_HUMAN sp|Q16555-2|DPYL2_HUMAN sp|Q16555-2|DPYL2_HUMAN Isoform 2 of Dihydropyrimidinase-related protein 2 OS=Homo sapiens OX=9606 GN=DPYSL2;sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2 OS=Homo sapiens OX=9606 GN=DPYSL2 PE=1 SV=1 1 92.7811 0.00196176 92.781 46.499 92.781 1 89.46 0.00231873 89.46 1 85.5355 0.00319713 85.536 1 92.7811 0.00196176 92.781 1 M EALVKDHGVNSFLVYMAFKDRFQLTDCQIYE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPXXXXXXXXXXXX DHGVNSFLVYM(1)AFK DHGVNSFLVYM(92.78)AFK 11 3 -0.24364 17325000 17325000 0 0 3.5164 0 0 4318800 0 0 0 0 7494000 5512200 NaN NaN 0.87656 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4318800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7494000 0 0 5512200 0 0 854 1376 132 132 513 594 1672;1673;1674 1773;1774;1775 1674 1775 20190902_JH_WT_Ubi_3 12205 1674 1775 20190902_JH_WT_Ubi_3 12205 1674 1775 20190902_JH_WT_Ubi_3 12205 sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN 401;437 sp|Q16555-2|DPYL2_HUMAN sp|Q16555-2|DPYL2_HUMAN sp|Q16555-2|DPYL2_HUMAN Isoform 2 of Dihydropyrimidinase-related protein 2 OS=Homo sapiens OX=9606 GN=DPYSL2;sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2 OS=Homo sapiens OX=9606 GN=DPYSL2 PE=1 SV=1 1 81.5944 0.00305911 81.594 61.831 81.594 1 81.5944 0.00305911 81.594 1 59.8721 0.0188465 59.872 1 71.2857 0.00458725 71.286 1 M AKTHNSSLEYNIFEGMECRGSPLVVISQGKI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPXXXXXXXXXXXX THNSSLEYNIFEGM(1)ECR THNSSLEYNIFEGM(81.59)ECR 14 3 -0.96038 6461700 6461700 0 0 NaN 0 0 3946600 876140 0 1638900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3946600 0 0 876140 0 0 0 0 0 1638900 0 0 0 0 0 0 0 0 0 0 0 855 1376 401 401 4403 4997 13974;13975;13976 14671;14672;14673 13976 14673 20190821_JH_WT_Ubi 7817 13976 14673 20190821_JH_WT_Ubi 7817 13976 14673 20190821_JH_WT_Ubi 7817 sp|Q16602|CALRL_HUMAN 42 sp|Q16602|CALRL_HUMAN sp|Q16602|CALRL_HUMAN sp|Q16602|CALRL_HUMAN Calcitonin gene-related peptide type 1 receptor OS=Homo sapiens OX=9606 GN=CALCRL PE=1 SV=2 0.956623 15.023 0.0310326 42.661 20.46 42.661 0.956623 15.023 0.0310326 42.661 1 M SPEDSIQLGVTRNKIMTAQYECYQKIMQDPI X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;X;X;Deamidation (NQ);X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP NKIM(0.957)TAQYECYQKIM(0.043)QDPIQQAEGVYCNR NKIM(15.02)TAQYECYQKIM(-15.02)QDPIQQAEGVYCNR 4 3 -2.0276 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 856 1378 42 42 3115 3562 10032 10567 10032 10567 20190821_JH_MUT_Ubi 9472 10032 10567 20190821_JH_MUT_Ubi 9472 10032 10567 20190821_JH_MUT_Ubi 9472 sp|Q16630|CPSF6_HUMAN;sp|Q16630-2|CPSF6_HUMAN 180;180 sp|Q16630|CPSF6_HUMAN sp|Q16630|CPSF6_HUMAN sp|Q16630|CPSF6_HUMAN Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=9606 GN=CPSF6 PE=1 SV=2;sp|Q16630-2|CPSF6_HUMAN Isoform 2 of Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=9606 GN=CPSF6 1 111.628 4.15804E-08 111.63 64.702 111.63 1 72.7934 0.00147919 72.793 1 70.9866 0.00205935 70.987 1 89.3535 1.94903E-05 89.353 1 97.6207 5.0307E-06 97.621 1 70.9866 0.00205935 70.987 1 111.628 4.15804E-08 111.63 1 M SQFEMQSRKTTQSGQMSGEGKAGPPGGSSRA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPX TTQSGQM(1)SGEGKAGPPGGSSR TTQSGQM(111.63)SGEGKAGPPGGSSR 7 3 0.11374 7855400 7855400 0 0 NaN 1200800 1125300 0 920220 2679200 1209400 720380 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1200800 0 0 1125300 0 0 0 0 0 920220 0 0 2679200 0 0 1209400 0 0 720380 0 0 0 0 0 0 0 0 857 1381 180 180 4639 5264 14853;14854;14855;14856;14857;14858 15607;15608;15609;15610;15611;15612 14858 15612 20190902_JH_MUT_Ubi_3 3516 14858 15612 20190902_JH_MUT_Ubi_3 3516 14858 15612 20190902_JH_MUT_Ubi_3 3516 sp|Q16698-2|DECR_HUMAN;sp|Q16698|DECR_HUMAN 66;75 sp|Q16698-2|DECR_HUMAN sp|Q16698-2|DECR_HUMAN sp|Q16698-2|DECR_HUMAN Isoform 2 of 2,4-dienoyl-CoA reductase, mitochondrial OS=Homo sapiens OX=9606 GN=DECR1;sp|Q16698|DECR_HUMAN 2,4-dienoyl-CoA reductase, mitochondrial OS=Homo sapiens OX=9606 GN=DECR1 PE=1 SV=1 1 92.2357 0.000308559 92.236 51.221 92.236 1 79.3927 0.00118143 79.393 1 88.6368 0.000398211 88.637 1 92.2357 0.000308559 92.236 1 M KVAFITGGGTGLGKGMTTLLSSLGAQCVIAS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP GM(1)TTLLSSLGAQCVIASR GM(92.24)TTLLSSLGAQCVIASR 2 3 -1.1439 7198600 7198600 0 0 2.9955 0 0 3242900 0 0 0 0 1897800 2057900 NaN NaN 1.3494 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3242900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1897800 0 0 2057900 0 0 858 1383 66 66 1629 1855 5211;5212;5213 5486;5487;5488 5213 5488 20190902_JH_WT_Ubi_3 12669 5213 5488 20190902_JH_WT_Ubi_3 12669 5213 5488 20190902_JH_WT_Ubi_3 12669 sp|Q16763|UBE2S_HUMAN 195 sp|Q16763|UBE2S_HUMAN sp|Q16763|UBE2S_HUMAN sp|Q16763|UBE2S_HUMAN Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens OX=9606 GN=UBE2S PE=1 SV=2 1 95.835 1.54071E-07 95.835 63.055 95.835 1 95.835 1.54071E-07 95.835 1 M TDPGAPGGPGGAEGPMAKKHAGERDKKLAAK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX ALASGTEASSTDPGAPGGPGGAEGPM(1)AKK ALASGTEASSTDPGAPGGPGGAEGPM(95.84)AKK 26 3 -0.73218 802500 802500 0 0 NaN 0 0 0 0 0 802500 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 802500 0 0 0 0 0 0 0 0 0 0 0 859 1385 195 195 195 223 658 723;724 658 723 20190902_JH_MUT_Ubi_2 5754 658 723 20190902_JH_MUT_Ubi_2 5754 658 723 20190902_JH_MUT_Ubi_2 5754 sp|Q27J81-2|INF2_HUMAN;sp|Q27J81|INF2_HUMAN 618;618 sp|Q27J81-2|INF2_HUMAN sp|Q27J81-2|INF2_HUMAN sp|Q27J81-2|INF2_HUMAN Isoform 2 of Inverted formin-2 OS=Homo sapiens OX=9606 GN=INF2;sp|Q27J81|INF2_HUMAN Inverted formin-2 OS=Homo sapiens OX=9606 GN=INF2 PE=1 SV=2 1 75.3872 0.0239535 75.387 20.406 75.387 1 75.3872 0.0239535 75.387 1 M ERLFSFPAAKPKEPTMVAPRARKEPKEITFL X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPXXXXXXXXXXX PKEPTM(1)VAPR PKEPTM(75.39)VAPR 6 3 1.1942 2332400 2332400 0 0 NaN 0 0 0 0 0 0 2332400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2332400 0 0 0 0 0 0 0 0 860 1396 618 618 3401 3882 10899 11463 10899 11463 20190902_JH_MUT_Ubi_3 3894 10899 11463 20190902_JH_MUT_Ubi_3 3894 10899 11463 20190902_JH_MUT_Ubi_3 3894 sp|Q2KHR3-2|QSER1_HUMAN;sp|Q2KHR3|QSER1_HUMAN 828;1067 sp|Q2KHR3-2|QSER1_HUMAN sp|Q2KHR3-2|QSER1_HUMAN sp|Q2KHR3-2|QSER1_HUMAN Isoform 2 of Glutamine and serine-rich protein 1 OS=Homo sapiens OX=9606 GN=QSER1;sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo sapiens OX=9606 GN=QSER1 PE=1 SV=3 1 53.5645 0.0172781 53.565 9.7037 53.565 1 53.5645 0.0172781 53.565 1 M GDAVSVKIEEENQDLMHFNLQKKRAKGKGQV X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPXXXXXXX IEEENQDLM(1)HFNLQKKR IEEENQDLM(53.56)HFNLQKKR 9 3 -2.3175 2859500 2859500 0 0 NaN 2859500 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2859500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 861 1398 828 828 2097 2395 6966 7335 6966 7335 20190821_JH_EV_Ubi 7983 6966 7335 20190821_JH_EV_Ubi 7983 6966 7335 20190821_JH_EV_Ubi 7983 sp|Q32P41|TRM5_HUMAN 386 sp|Q32P41|TRM5_HUMAN sp|Q32P41|TRM5_HUMAN sp|Q32P41|TRM5_HUMAN tRNA (guanine(37)-N1)-methyltransferase OS=Homo sapiens OX=9606 GN=TRMT5 PE=1 SV=2 1 60.0802 0.0295589 60.08 37.849 60.08 1 60.0802 0.0295589 60.08 1 M LLGLSKERKPSVHVVMNLPAKAIEFLSAFKW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPXXXXXXXXXX PSVHVVM(1)NLPAK PSVHVVM(60.08)NLPAK 7 3 -1.7158 2201700 2201700 0 0 NaN 0 0 0 2201700 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2201700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 862 1405 386 386 3526 4022 11341 11913 11341 11913 20190902_JH_EV_Ubi_2 5582 11341 11913 20190902_JH_EV_Ubi_2 5582 11341 11913 20190902_JH_EV_Ubi_2 5582 sp|Q3V6T2-5|GRDN_HUMAN;sp|Q3V6T2-4|GRDN_HUMAN;sp|Q3V6T2-2|GRDN_HUMAN;sp|Q3V6T2-3|GRDN_HUMAN;sp|Q3V6T2|GRDN_HUMAN 496;496;496;496;496 sp|Q3V6T2-5|GRDN_HUMAN sp|Q3V6T2-5|GRDN_HUMAN sp|Q3V6T2-5|GRDN_HUMAN Isoform 5 of Girdin OS=Homo sapiens OX=9606 GN=CCDC88A;sp|Q3V6T2-4|GRDN_HUMAN Isoform 4 of Girdin OS=Homo sapiens OX=9606 GN=CCDC88A;sp|Q3V6T2-2|GRDN_HUMAN Isoform 2 of Girdin OS=Homo sapiens OX=9606 GN=CCDC88A;sp|Q3V6T2-3|GRDN_HUMAN 1 78.6552 0.0324465 78.655 12.088 78.655 1 78.6552 0.0324465 78.655 M TTVDSVEGNASKILKMEKENQRLSKKVEILE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPXXXXXXXXX ILKM(1)EKENQR ILKM(78.66)EKENQR 4 3 -1.2339 1772000 1772000 0 0 NaN 0 0 0 0 0 0 1772000 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1772000 0 0 0 0 0 0 0 0 863 1408 496 496 2200 2508 7266 7643 7266 7643 20190902_JH_MUT_Ubi_3 5443 7266 7643 20190902_JH_MUT_Ubi_3 5443 7266 7643 20190902_JH_MUT_Ubi_3 5443 sp|Q3YEC7-4|RABL6_HUMAN;sp|Q3YEC7-5|RABL6_HUMAN;sp|Q3YEC7-6|RABL6_HUMAN;sp|Q3YEC7-3|RABL6_HUMAN;sp|Q3YEC7|RABL6_HUMAN;sp|Q3YEC7-2|RABL6_HUMAN 146;146;146;146;146;146 sp|Q3YEC7-4|RABL6_HUMAN sp|Q3YEC7-4|RABL6_HUMAN sp|Q3YEC7-4|RABL6_HUMAN Isoform 4 of Rab-like protein 6 OS=Homo sapiens OX=9606 GN=RABL6;sp|Q3YEC7-5|RABL6_HUMAN Isoform 5 of Rab-like protein 6 OS=Homo sapiens OX=9606 GN=RABL6;sp|Q3YEC7-6|RABL6_HUMAN Isoform 6 of Rab-like protein 6 OS=Homo sapiens OX=960 0.90352 9.71503 0.0196453 62.408 21.683 62.408 0.90352 9.71503 0.0196453 62.408 M AEFLDVYKNCNGVVMMFDITKQWTFNYILRE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPXXXXXXXXXX NCNGVVM(0.096)M(0.904)FDITK NCNGVVM(-9.72)M(9.72)FDITK 8 3 2.4664 1809400 1809400 0 0 NaN 0 0 1809400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1809400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 864 1409 146 146 3012 3443 9734 10255 9734 10255 20190821_JH_WT_Ubi 4010 9734 10255 20190821_JH_WT_Ubi 4010 9734 10255 20190821_JH_WT_Ubi 4010 sp|Q4KMQ2-3|ANO6_HUMAN;sp|Q4KMQ2|ANO6_HUMAN;sp|Q4KMQ2-2|ANO6_HUMAN 868;886;907 sp|Q4KMQ2-3|ANO6_HUMAN sp|Q4KMQ2-3|ANO6_HUMAN sp|Q4KMQ2-3|ANO6_HUMAN Isoform 3 of Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6;sp|Q4KMQ2|ANO6_HUMAN Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6 PE=1 SV=2;sp|Q4KMQ2-2|ANO6_HUMAN Isoform 2 of Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6 1 46.0691 0.00709862 78.964 31.07 46.069 1 72.7049 0.0100173 72.705 1 78.964 0.00709862 78.964 1 46.0691 0.0343745 46.069 2 M KYLTQKLLHENHLKDMTKNMGVIAERMIEAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX DM(1)TKNM(1)GVIAER DM(46.07)TKNM(46.07)GVIAER 2 3 -0.47746 8011400 0 8011400 0 NaN 0 0 0 2770600 3209500 2031400 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 2770600 0 0 3209500 0 0 2031400 0 0 0 0 0 0 0 0 0 0 865 1415 868 868 625 717 1959;1960;1961 2078;2079;2080 1961 2080 20190902_JH_MUT_Ubi_2 4560 1960 2079 20190902_JH_EV_Ubi_3 4328 1960 2079 20190902_JH_EV_Ubi_3 4328 sp|Q4KMQ2-3|ANO6_HUMAN;sp|Q4KMQ2|ANO6_HUMAN;sp|Q4KMQ2-2|ANO6_HUMAN 872;890;911 sp|Q4KMQ2-3|ANO6_HUMAN sp|Q4KMQ2-3|ANO6_HUMAN sp|Q4KMQ2-3|ANO6_HUMAN Isoform 3 of Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6;sp|Q4KMQ2|ANO6_HUMAN Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6 PE=1 SV=2;sp|Q4KMQ2-2|ANO6_HUMAN Isoform 2 of Anoctamin-6 OS=Homo sapiens OX=9606 GN=ANO6 1 46.0691 0.00709862 78.964 31.07 46.069 1 72.7049 0.0100173 72.705 1 78.964 0.00709862 78.964 1 46.0691 0.0343745 46.069 2 M QKLLHENHLKDMTKNMGVIAERMIEAVDNNL X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX DM(1)TKNM(1)GVIAER DM(46.07)TKNM(46.07)GVIAER 6 3 -0.47746 8011400 0 8011400 0 NaN 0 0 0 2770600 3209500 2031400 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 2770600 0 0 3209500 0 0 2031400 0 0 0 0 0 0 0 0 0 0 866 1415 872 872 625 717 1959;1960;1961 2078;2079;2080 1961 2080 20190902_JH_MUT_Ubi_2 4560 1960 2079 20190902_JH_EV_Ubi_3 4328 1960 2079 20190902_JH_EV_Ubi_3 4328 sp|Q53FA7|QORX_HUMAN 276 sp|Q53FA7|QORX_HUMAN sp|Q53FA7|QORX_HUMAN sp|Q53FA7|QORX_HUMAN Quinone oxidoreductase PIG3 OS=Homo sapiens OX=9606 GN=TP53I3 PE=1 SV=2 1 47.1549 0.0195468 47.155 14.59 47.155 1 47.1549 0.0195468 47.155 1 M LITSLLRSRDNKYKQMLVNAFTEQILPHFST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP QM(1)LVNAFTEQILPHFSTEGPQR QM(47.15)LVNAFTEQILPHFSTEGPQR 2 3 -0.23385 2617900 2617900 0 0 2.8928 2617900 0 0 0 0 0 0 0 0 2.8928 NaN NaN NaN NaN NaN NaN NaN NaN 2617900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 867 1417 276 276 3673 4182 11730 12309;12310 11730 12309 20190821_JH_EV_Ubi 12581 11730 12309 20190821_JH_EV_Ubi 12581 11730 12309 20190821_JH_EV_Ubi 12581 sp|Q53GQ0|DHB12_HUMAN 193 sp|Q53GQ0|DHB12_HUMAN sp|Q53GQ0|DHB12_HUMAN sp|Q53GQ0|DHB12_HUMAN Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens OX=9606 GN=HSD17B12 PE=1 SV=2 1 165.395 3.75525E-34 165.4 137.22 165.4 1 112.368 4.49436E-12 112.37 1 133.511 4.4904E-16 133.51 1 150.48 4.52563E-26 150.48 1 92.5511 1.05103E-06 92.551 1 138.094 7.40468E-20 138.09 1 104.972 5.29209E-10 104.97 1 165.395 3.75525E-34 165.4 1 M ERSKGAILNISSGSGMLPVPLLTIYSATKTF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPXX GAILNISSGSGM(1)LPVPLLTIYSATK GAILNISSGSGM(165.4)LPVPLLTIYSATK 12 3 -0.046833 57284000 57284000 0 0 5.9588 1621700 11529000 24574000 0 0 2661500 1802700 6638600 8456300 NaN 3.829 3.722 NaN NaN NaN NaN NaN NaN 1621700 0 0 11529000 0 0 24574000 0 0 0 0 0 0 0 0 2661500 0 0 1802700 0 0 6638600 0 0 8456300 0 0 868 1418 193 193 1369 1558 4347;4348;4349;4350;4351;4352;4353 4570;4571;4572;4573;4574;4575;4576 4353 4576 20190902_JH_WT_Ubi_3 15680 4353 4576 20190902_JH_WT_Ubi_3 15680 4353 4576 20190902_JH_WT_Ubi_3 15680 sp|Q53TN4-3|CYBR1_HUMAN;sp|Q53TN4|CYBR1_HUMAN 191;249 sp|Q53TN4-3|CYBR1_HUMAN sp|Q53TN4-3|CYBR1_HUMAN sp|Q53TN4-3|CYBR1_HUMAN Isoform 3 of Cytochrome b reductase 1 OS=Homo sapiens OX=9606 GN=CYBRD1;sp|Q53TN4|CYBR1_HUMAN Cytochrome b reductase 1 OS=Homo sapiens OX=9606 GN=CYBRD1 PE=1 SV=1 1 58.4566 2.84701E-07 96.504 70.569 58.457 1 58.4566 0.00216084 58.457 1 93.4071 6.08611E-07 93.407 1 96.5042 2.84701E-07 96.504 2 M ILHPNGGTEQGARGSMPAYSGNNMDKSDSEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GSM(1)PAYSGNNM(1)DKSDSELNSEVAAR GSM(58.46)PAYSGNNM(58.46)DKSDSELNSEVAAR 3 3 -1.2059 6126000 0 6126000 0 NaN 0 1022200 0 3196400 1907300 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1022200 0 0 0 0 0 3196400 0 0 1907300 0 0 0 0 0 0 0 0 0 0 0 0 0 869 1419 191 191 1697 1934 5406;5407;5408 5691;5692;5693 5408 5693 20190821_JH_MUT_Ubi 4790 5407 5692 20190902_JH_EV_Ubi_3 5837 5407 5692 20190902_JH_EV_Ubi_3 5837 sp|Q53TN4-3|CYBR1_HUMAN;sp|Q53TN4|CYBR1_HUMAN 199;257 sp|Q53TN4-3|CYBR1_HUMAN sp|Q53TN4-3|CYBR1_HUMAN sp|Q53TN4-3|CYBR1_HUMAN Isoform 3 of Cytochrome b reductase 1 OS=Homo sapiens OX=9606 GN=CYBRD1;sp|Q53TN4|CYBR1_HUMAN Cytochrome b reductase 1 OS=Homo sapiens OX=9606 GN=CYBRD1 PE=1 SV=1 1 58.4566 2.84701E-07 96.504 70.569 58.457 1 58.4566 0.00216084 58.457 1 93.4071 6.08611E-07 93.407 1 96.5042 2.84701E-07 96.504 2 M EQGARGSMPAYSGNNMDKSDSELNSEVAARK X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPX GSM(1)PAYSGNNM(1)DKSDSELNSEVAAR GSM(58.46)PAYSGNNM(58.46)DKSDSELNSEVAAR 11 3 -1.2059 6126000 0 6126000 0 NaN 0 1022200 0 3196400 1907300 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1022200 0 0 0 0 0 3196400 0 0 1907300 0 0 0 0 0 0 0 0 0 0 0 0 0 870 1419 199 199 1697 1934 5406;5407;5408 5691;5692;5693 5408 5693 20190821_JH_MUT_Ubi 4790 5407 5692 20190902_JH_EV_Ubi_3 5837 5407 5692 20190902_JH_EV_Ubi_3 5837 sp|Q562R1|ACTBL_HUMAN 45 sp|Q562R1|ACTBL_HUMAN sp|Q562R1|ACTBL_HUMAN sp|Q562R1|ACTBL_HUMAN Beta-actin-like protein 2 OS=Homo sapiens OX=9606 GN=ACTBL2 PE=1 SV=2 1 58.6296 7.64396E-05 142.98 95.113 58.63 1 142.982 7.64396E-05 142.98 1 103.255 0.00259319 103.26 1 49.4658 0.000780566 120.45 1 58.6296 0.0319851 58.63 1 81.3335 0.000730459 121.83 1 56.043 0.000868552 118.03 1 50.2837 0.00125789 110.53 1 112.295 0.000995187 112.3 1 58.6296 0.000689277 122.96 1;2 M AVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX HQGVM(1)VGM(1)GQK HQGVM(58.63)VGM(58.63)GQK 5 3 1.0024 510310000 135020000 375290000 0 9.663 9324800 9465200 60413000 1194900 2943900 40533000 47174000 67942000 237330000 NaN NaN 3.5592 NaN NaN NaN NaN 3.3661 15.162 1323500 8001300 0 0 9465200 0 22012000 38401000 0 0 1194900 0 2943900 0 0 8753200 31780000 0 8329300 38845000 0 48452000 19490000 0 43204000 194120000 0 871 1420 45 45 1976 2248;2249 6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6440;6442;6445;6447;6449;6451;6453 6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6778;6781;6783;6785;6787;6789 6439 6775 20190902_JH_WT_Ubi_3 2906 6423 6759 20190821_JH_EV_Ubi 2238 6423 6759 20190821_JH_EV_Ubi 2238 sp|Q562R1|ACTBL_HUMAN 48 sp|Q562R1|ACTBL_HUMAN sp|Q562R1|ACTBL_HUMAN sp|Q562R1|ACTBL_HUMAN Beta-actin-like protein 2 OS=Homo sapiens OX=9606 GN=ACTBL2 PE=1 SV=2 1 58.6296 7.64396E-05 142.98 95.113 58.63 1 142.982 7.64396E-05 142.98 1 103.255 0.00259319 103.26 1 49.4658 0.000660169 123.75 1 58.6296 0.00106215 112.71 1 56.043 0.00106215 112.71 1 50.2837 0.00263837 104.05 1 112.295 0.000370925 131.52 1 58.6296 0.00626793 93.556 1;2 M PSMIGRPRHQGVMVGMGQKDCYVGDEAQSKR X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX HQGVM(1)VGM(1)GQK HQGVM(58.63)VGM(58.63)GQK 8 3 1.0024 478680000 103390000 375290000 0 9.0642 8001300 12501000 51389000 3238600 0 38341000 42075000 68726000 220420000 NaN NaN 3.0276 NaN NaN NaN NaN 3.4049 14.082 0 8001300 0 3035500 9465200 0 12988000 38401000 0 2043700 1194900 0 0 0 0 6561300 31780000 0 3229600 38845000 0 49236000 19490000 0 26296000 194120000 0 872 1420 48 48 1976 2248;2249 6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6441;6443;6444;6446;6448;6450;6452 6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6777;6779;6780;6782;6784;6786;6788 6439 6775 20190902_JH_WT_Ubi_3 2906 6423 6759 20190821_JH_EV_Ubi 2238 6423 6759 20190821_JH_EV_Ubi 2238 sp|Q567U6|CCD93_HUMAN 392 sp|Q567U6|CCD93_HUMAN sp|Q567U6|CCD93_HUMAN sp|Q567U6|CCD93_HUMAN Coiled-coil domain-containing protein 93 OS=Homo sapiens OX=9606 GN=CCDC93 PE=1 SV=2 1 61.7646 0.0319743 61.765 14.059 61.765 1 61.7646 0.0319743 61.765 1 M KADPSILQNLRALVAMNENLKSQEQEFKAHC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX ALVAM(1)NENLK ALVAM(61.76)NENLK 5 3 -1.0226 3604000 3604000 0 0 NaN 0 0 3604000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3604000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 873 1421 392 392 220 249 726 795 726 795 20190821_JH_WT_Ubi 5623 726 795 20190821_JH_WT_Ubi 5623 726 795 20190821_JH_WT_Ubi 5623 sp|Q5CZC0|FSIP2_HUMAN;sp|Q5CZC0-2|FSIP2_HUMAN 686;686 sp|Q5CZC0|FSIP2_HUMAN sp|Q5CZC0|FSIP2_HUMAN sp|Q5CZC0|FSIP2_HUMAN Fibrous sheath-interacting protein 2 OS=Homo sapiens OX=9606 GN=FSIP2 PE=2 SV=4;sp|Q5CZC0-2|FSIP2_HUMAN Isoform 2 of Fibrous sheath-interacting protein 2 OS=Homo sapiens OX=9606 GN=FSIP2 0.980683 17.0561 0.0102503 74.841 13.68 74.841 0.980683 17.0561 0.0102503 74.841 M GSSLHCDKTAKAMDEMKNLKNVFVNFKCYLK X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPXXXXXXXXXXX TAKAM(0.019)DEM(0.981)KNLK TAKAM(-17.06)DEM(17.06)KNLK 8 2 -1.8732 1222500 1222500 0 0 NaN 0 0 0 1222500 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1222500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 874 1424 686 686 4255 4830 13473 14133 13473 14133 20190902_JH_EV_Ubi_2 7886 13473 14133 20190902_JH_EV_Ubi_2 7886 13473 14133 20190902_JH_EV_Ubi_2 7886 sp|Q5HYI7-5|MTX3_HUMAN;sp|Q5HYI7|MTX3_HUMAN 216;277 sp|Q5HYI7-5|MTX3_HUMAN sp|Q5HYI7-5|MTX3_HUMAN sp|Q5HYI7-5|MTX3_HUMAN Isoform 4 of Metaxin-3 OS=Homo sapiens OX=9606 GN=MTX3;sp|Q5HYI7|MTX3_HUMAN Metaxin-3 OS=Homo sapiens OX=9606 GN=MTX3 PE=1 SV=2 1 61.3533 0.0311653 61.353 7.2873 61.353 1 61.3533 0.0311653 61.353 1 M KLTQLVNKESNLIEKMDDNLRQSPQLPPRKL X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPXXXXXXXXXX ESNLIEKM(1)DDNLR ESNLIEKM(61.35)DDNLR 8 2 3.5616 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 875 1426 216 216 1101 1241 3506 3683 3506 3683 20190902_JH_MUT_Ubi_2 7534 3506 3683 20190902_JH_MUT_Ubi_2 7534 3506 3683 20190902_JH_MUT_Ubi_2 7534 sp|Q5JRA6-4|TGO1_HUMAN;sp|Q5JRA6-2|TGO1_HUMAN;sp|Q5JRA6|TGO1_HUMAN 134;1256;1256 sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN Isoform 4 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6-2|TGO1_HUMAN Isoform 2 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6|TGO1_HUM 1 62.0879 0.0210114 62.088 26.615 62.088 1 62.0879 0.0210114 62.088 M IKESKKHVQETRKQNMILSDEAIKYKDKIKT X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX KQNM(1)ILSDEAIKYK KQNM(62.09)ILSDEAIKYK 4 3 1.4508 5070400 5070400 0 0 NaN 0 0 0 0 5070400 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 5070400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876 1429 134 134 2444 2779 7994 8405 7994 8405 20190902_JH_EV_Ubi_3 4800 7994 8405 20190902_JH_EV_Ubi_3 4800 7994 8405 20190902_JH_EV_Ubi_3 4800 sp|Q5JRA6-4|TGO1_HUMAN;sp|Q5JRA6-2|TGO1_HUMAN;sp|Q5JRA6|TGO1_HUMAN 614;1677;1736 sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN Isoform 4 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6-2|TGO1_HUMAN Isoform 2 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6|TGO1_HUM 1 47.8057 0.00578945 47.806 30.202 47.806 1 47.8057 0.00578945 47.806 2 M SGKPSPSDPGSGTATMMNSSSRGSSPTRVLD X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX WSAEASGKPSPSDPGSGTATM(1)M(1)NSSSR WSAEASGKPSPSDPGSGTATM(47.81)M(47.81)NSSSR 21 3 1.6955 388230 0 388230 0 NaN 0 0 0 0 0 0 388230 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 388230 0 0 0 0 0 0 0 877 1429 614 614 5096 5792 16443 17280 16443 17280 20190902_JH_MUT_Ubi_3 5384 16443 17280 20190902_JH_MUT_Ubi_3 5384 16443 17280 20190902_JH_MUT_Ubi_3 5384 sp|Q5JRA6-4|TGO1_HUMAN;sp|Q5JRA6-2|TGO1_HUMAN;sp|Q5JRA6|TGO1_HUMAN 615;1678;1737 sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN sp|Q5JRA6-4|TGO1_HUMAN Isoform 4 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6-2|TGO1_HUMAN Isoform 2 of Transport and Golgi organization protein 1 homolog OS=Homo sapiens OX=9606 GN=MIA3;sp|Q5JRA6|TGO1_HUM 1 47.8057 0.00578945 47.806 30.202 47.806 1 47.8057 0.00578945 47.806 2 M GKPSPSDPGSGTATMMNSSSRGSSPTRVLDE X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX WSAEASGKPSPSDPGSGTATM(1)M(1)NSSSR WSAEASGKPSPSDPGSGTATM(47.81)M(47.81)NSSSR 22 3 1.6955 388230 0 388230 0 NaN 0 0 0 0 0 0 388230 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 388230 0 0 0 0 0 0 0 878 1429 615 615 5096 5792 16443 17280 16443 17280 20190902_JH_MUT_Ubi_3 5384 16443 17280 20190902_JH_MUT_Ubi_3 5384 16443 17280 20190902_JH_MUT_Ubi_3 5384 sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN 302;301 sp|Q5JTV8-3|TOIP1_HUMAN sp|Q5JTV8-3|TOIP1_HUMAN sp|Q5JTV8-3|TOIP1_HUMAN Isoform 3 of Torsin-1A-interacting protein 1 OS=Homo sapiens OX=9606 GN=TOR1AIP1;sp|Q5JTV8|TOIP1_HUMAN Torsin-1A-interacting protein 1 OS=Homo sapiens OX=9606 GN=TOR1AIP1 PE=1 SV=2 1 75.2254 8.58015E-06 95.591 63.696 75.225 1 75.0639 0.00372491 75.064 1 95.5913 8.58015E-06 95.591 1 82.8854 0.000263594 82.885 1 75.2254 0.000698324 75.225 1 M TPQEWAPQTARIRTRMQNDSILKSELGNQSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QNDSILKSELGNQSPSTSSR M(75.23)QNDSILKSELGNQSPSTSSR 1 3 0.044108 12653000 12653000 0 0 14.708 0 0 4250400 0 2117100 0 0 5402100 0 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4250400 0 0 0 0 0 2117100 0 0 0 0 0 0 0 0 5402100 0 0 0 0 0 879 1430 302 302 2960 3369;3370 9542;9543;9544;9545 10042;10043;10044;10045 9545 10045 20190902_JH_WT_Ubi_2 8314 9544 10044 20190821_JH_WT_Ubi 6246 9544 10044 20190821_JH_WT_Ubi 6246 sp|Q5RHP9-3|ERIC3_HUMAN;sp|Q5RHP9|ERIC3_HUMAN 94;291 sp|Q5RHP9-3|ERIC3_HUMAN sp|Q5RHP9-3|ERIC3_HUMAN sp|Q5RHP9-3|ERIC3_HUMAN Isoform 3 of Glutamate-rich protein 3 OS=Homo sapiens OX=9606 GN=ERICH3;sp|Q5RHP9|ERIC3_HUMAN Glutamate-rich protein 3 OS=Homo sapiens OX=9606 GN=ERICH3 PE=2 SV=1 1 57.4992 0.0163721 57.499 6.6719 57.499 1 57.4992 0.0163721 57.499 1 M RRIHKTSLHSNAAITMIYLGKNVHLSSDNPD X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPXXXXXXXXXX IHKTSLHSNAAITM(1)IYLGK IHKTSLHSNAAITM(57.5)IYLGK 14 3 -1.2611 3074800 3074800 0 0 NaN 0 0 3074800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3074800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 880 1434 94 94 2141 2442 7105 7478 7105 7478 20190821_JH_WT_Ubi 13716 7105 7478 20190821_JH_WT_Ubi 13716 7105 7478 20190821_JH_WT_Ubi 13716 sp|Q5SQI0-7|ATAT_HUMAN;sp|Q5SQI0-6|ATAT_HUMAN;sp|Q5SQI0-5|ATAT_HUMAN;sp|Q5SQI0-4|ATAT_HUMAN;sp|Q5SQI0-3|ATAT_HUMAN;sp|Q5SQI0-2|ATAT_HUMAN;sp|Q5SQI0|ATAT_HUMAN 143;143;143;143;143;131;143 sp|Q5SQI0-7|ATAT_HUMAN sp|Q5SQI0-7|ATAT_HUMAN sp|Q5SQI0-7|ATAT_HUMAN Isoform 7 of Alpha-tubulin N-acetyltransferase 1 OS=Homo sapiens OX=9606 GN=ATAT1;sp|Q5SQI0-6|ATAT_HUMAN Isoform 6 of Alpha-tubulin N-acetyltransferase 1 OS=Homo sapiens OX=9606 GN=ATAT1;sp|Q5SQI0-5|ATAT_HUMAN Isoform 5 of Alpha-tubu 1 82.4943 0.00119236 115.91 20.432 82.494 1 115.915 0.00119236 115.91 1 74.9616 0.019152 74.962 1 82.4943 0.0144155 82.494 1 M ESVQRHGHGRELFQYMLQKERVEPHQLAIDR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPXXXXXXXXXX ELFQYM(1)LQKER ELFQYM(82.49)LQKER 6 3 -0.80631 4099900 4099900 0 0 NaN 0 904070 0 0 0 1268400 1927400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 904070 0 0 0 0 0 0 0 0 0 0 0 1268400 0 0 1927400 0 0 0 0 0 0 0 0 881 1435 143 143 990 1119 3166;3167;3168 3328;3329;3330 3168 3330 20190902_JH_MUT_Ubi_3 2515 3166 3328 20190821_JH_MUT_Ubi 2339 3166 3328 20190821_JH_MUT_Ubi 2339 sp|Q5T8D3-2|ACBD5_HUMAN;sp|Q5T8D3-3|ACBD5_HUMAN;sp|Q5T8D3|ACBD5_HUMAN 34;69;67 sp|Q5T8D3-2|ACBD5_HUMAN sp|Q5T8D3-2|ACBD5_HUMAN sp|Q5T8D3-2|ACBD5_HUMAN Isoform 2 of Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ACBD5;sp|Q5T8D3-3|ACBD5_HUMAN Isoform 3 of Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ACBD5;sp|Q5T8D3|ACBD5_HUMAN Acyl 0.499999 0 0.0199924 48.984 15.009 48.984 0.499999 0 0.0199924 48.984 1 M IQSLPKNGSFQPTNEMMLKFYSFYKQATEGP X;Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX FEAAVKVIQSLPKNGSFQPTNEM(0.5)M(0.5)LK FEAAVKVIQSLPKNGSFQPTNEM(0)M(0)LK 23 3 -2.5073 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 882 1444 34 34 1183 1335 3757 3953 3757 3953 20190821_JH_EV_Ubi 12209 3757 3953 20190821_JH_EV_Ubi 12209 3757 3953 20190821_JH_EV_Ubi 12209 sp|Q5T8D3-2|ACBD5_HUMAN;sp|Q5T8D3-3|ACBD5_HUMAN;sp|Q5T8D3|ACBD5_HUMAN 35;70;68 sp|Q5T8D3-2|ACBD5_HUMAN sp|Q5T8D3-2|ACBD5_HUMAN sp|Q5T8D3-2|ACBD5_HUMAN Isoform 2 of Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ACBD5;sp|Q5T8D3-3|ACBD5_HUMAN Isoform 3 of Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ACBD5;sp|Q5T8D3|ACBD5_HUMAN Acyl 0.500001 0 0.0199924 48.984 15.009 48.984 0.500001 0 0.0199924 48.984 1 M QSLPKNGSFQPTNEMMLKFYSFYKQATEGPC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FEAAVKVIQSLPKNGSFQPTNEM(0.5)M(0.5)LK FEAAVKVIQSLPKNGSFQPTNEM(0)M(0)LK 24 3 -2.5073 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883 1444 35 35 1183 1335 3757 3953 3757 3953 20190821_JH_EV_Ubi 12209 3757 3953 20190821_JH_EV_Ubi 12209 3757 3953 20190821_JH_EV_Ubi 12209 sp|Q5T9S5-2|CCD18_HUMAN;sp|Q5T9S5|CCD18_HUMAN 361;361 sp|Q5T9S5-2|CCD18_HUMAN sp|Q5T9S5-2|CCD18_HUMAN sp|Q5T9S5-2|CCD18_HUMAN Isoform 2 of Coiled-coil domain-containing protein 18 OS=Homo sapiens OX=9606 GN=CCDC18;sp|Q5T9S5|CCD18_HUMAN Coiled-coil domain-containing protein 18 OS=Homo sapiens OX=9606 GN=CCDC18 PE=1 SV=1 1 66.6919 0.0243751 66.692 11.71 66.692 1 66.6919 0.0243751 66.692 1 M ELENKDEILRDKFSLMNENRELKVRVAAQNE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPXXXXXXXX FSLM(1)NENRELK FSLM(66.69)NENRELK 4 2 2.8911 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 884 1445 361 361 1301 1475 4111 4322 4111 4322 20190902_JH_WT_Ubi_2 10039 4111 4322 20190902_JH_WT_Ubi_2 10039 4111 4322 20190902_JH_WT_Ubi_2 10039 sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN 141;141;141 sp|Q5TDH0-3|DDI2_HUMAN sp|Q5TDH0-3|DDI2_HUMAN sp|Q5TDH0-3|DDI2_HUMAN Isoform 3 of Protein DDI1 homolog 2 OS=Homo sapiens OX=9606 GN=DDI2;sp|Q5TDH0|DDI2_HUMAN Protein DDI1 homolog 2 OS=Homo sapiens OX=9606 GN=DDI2 PE=1 SV=1;sp|Q5TDH0-2|DDI2_HUMAN Isoform 2 of Protein DDI1 homolog 2 OS=Homo sapiens OX=9 1 78.6898 2.88837E-07 124.78 91.091 78.69 1 84.8423 0.00247737 84.842 1 57.2884 0.0260011 57.288 1 119.773 1.72545E-05 119.77 1 124.776 2.88837E-07 124.78 1 65.2255 0.0139388 65.225 1 105.527 0.000330137 105.53 1 96.1633 0.000947348 96.163 1 69.5939 0.010005 69.594 1 78.6898 0.00402959 78.69 1 M TSSPQGLDNPALLRDMLLANPHELSLLKERN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX DM(1)LLANPHELSLLKER DM(78.69)LLANPHELSLLKER 2 3 1.5368 53602000 53602000 0 0 21.687 3681200 5487100 9553800 3485600 3220200 8770300 5071000 6551000 7782200 NaN 2.2201 NaN NaN NaN NaN NaN NaN NaN 3681200 0 0 5487100 0 0 9553800 0 0 3485600 0 0 3220200 0 0 8770300 0 0 5071000 0 0 6551000 0 0 7782200 0 0 885 1446 141 141 622 713 1947;1948;1949;1950;1951;1952;1953;1954;1955 2066;2067;2068;2069;2070;2071;2072;2073;2074 1955 2074 20190902_JH_WT_Ubi_3 10327 1948 2067 20190902_JH_EV_Ubi_2 8961 1948 2067 20190902_JH_EV_Ubi_2 8961 sp|Q5TYW1-2|ZN658_HUMAN;sp|Q5TYW1|ZN658_HUMAN 144;144 sp|Q5TYW1-2|ZN658_HUMAN sp|Q5TYW1-2|ZN658_HUMAN sp|Q5TYW1-2|ZN658_HUMAN Isoform 2 of Zinc finger protein 658 OS=Homo sapiens OX=9606 GN=ZNF658;sp|Q5TYW1|ZN658_HUMAN Zinc finger protein 658 OS=Homo sapiens OX=9606 GN=ZNF658 PE=1 SV=2 1 64.3744 0.00930858 69.258 6.0723 64.374 1 69.2576 0.00930858 69.258 1 64.3744 0.0128592 64.374 1 M PELSEKISCKCDSHRMNLPVASQLIISERKY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)NLPVASQLIISERK M(64.37)NLPVASQLIISERK 1 3 -1.5948 14257000 14257000 0 0 NaN 3125900 0 11131000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3125900 0 0 0 0 0 11131000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 886 1447 144 144 2951 3356 9499;9500 9999;10000 9500 10000 20190821_JH_WT_Ubi 9637 9499 9999 20190821_JH_EV_Ubi 9921 9499 9999 20190821_JH_EV_Ubi 9921 sp|Q5VVW2-3|GARL3_HUMAN;sp|Q5VVW2-2|GARL3_HUMAN;sp|Q5VVW2-5|GARL3_HUMAN;sp|Q5VVW2|GARL3_HUMAN 179;220;198;220 sp|Q5VVW2-3|GARL3_HUMAN sp|Q5VVW2-3|GARL3_HUMAN sp|Q5VVW2-3|GARL3_HUMAN Isoform 3 of GTPase-activating Rap/Ran-GAP domain-like protein 3 OS=Homo sapiens OX=9606 GN=GARNL3;sp|Q5VVW2-2|GARL3_HUMAN Isoform 2 of GTPase-activating Rap/Ran-GAP domain-like protein 3 OS=Homo sapiens OX=9606 GN=GARNL3;sp|Q5VVW2- 1 57.1708 0.00358196 71.376 47.333 57.171 1 57.1708 0.00358196 71.376 1 M KSILSAKDGQLTDDEMFSNEIGSEPFQKFLN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPXXX DGQLTDDEM(1)FSNEIGSEPFQK DGQLTDDEM(57.17)FSNEIGSEPFQK 9 3 -0.7616 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 887 1451 179 179 491 571 1612;1613 1706;1707 1613 1707 20190902_JH_WT_Ubi_3 6996 1612 1706 20190902_JH_WT_Ubi_3 6991 1612 1706 20190902_JH_WT_Ubi_3 6991 sp|Q5XPI4|RN123_HUMAN;sp|Q5XPI4-2|RN123_HUMAN 8;8 sp|Q5XPI4|RN123_HUMAN sp|Q5XPI4|RN123_HUMAN sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens OX=9606 GN=RNF123 PE=1 SV=1;sp|Q5XPI4-2|RN123_HUMAN Isoform 2 of E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens OX=9606 GN=RNF123 1 76.1645 0.0296638 76.165 25.373 76.165 1 76.1645 0.0296638 76.165 1 M ________MASKGAGMSFSRKSYRLTSDAEK X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPXXXXXXXXXX ASKGAGM(1)SFSRK ASKGAGM(76.16)SFSRK 7 3 1.4814 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 888 1456 8 8 276 325 951 1030 951 1030 20190902_JH_MUT_Ubi_2 4549 951 1030 20190902_JH_MUT_Ubi_2 4549 951 1030 20190902_JH_MUT_Ubi_2 4549 sp|Q658P3-2|STEA3_HUMAN 11 sp|Q658P3-2|STEA3_HUMAN sp|Q658P3-2|STEA3_HUMAN sp|Q658P3-2|STEA3_HUMAN Isoform 2 of Metalloreductase STEAP3 OS=Homo sapiens OX=9606 GN=STEAP3 1 84.8591 0.000997986 84.859 51.667 84.859 1 84.8591 0.000997986 84.859 2 M _____MSHQPAVATKMPEEMDKPLISLHLVD X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPXXXXXXXXX SHQPAVATKM(1)PEEM(1)DK SHQPAVATKM(84.86)PEEM(84.86)DK 10 3 -0.87165 1140100 0 1140100 0 NaN 0 0 0 1140100 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1140100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 889 1459 11 11 3951 4494 12536 13150 12536 13150 20190902_JH_EV_Ubi_2 4402 12536 13150 20190902_JH_EV_Ubi_2 4402 12536 13150 20190902_JH_EV_Ubi_2 4402 sp|Q658P3-2|STEA3_HUMAN 15 sp|Q658P3-2|STEA3_HUMAN sp|Q658P3-2|STEA3_HUMAN sp|Q658P3-2|STEA3_HUMAN Isoform 2 of Metalloreductase STEAP3 OS=Homo sapiens OX=9606 GN=STEAP3 1 84.8591 0.000997986 84.859 51.667 84.859 1 84.8591 0.000997986 84.859 2 M _MSHQPAVATKMPEEMDKPLISLHLVDSDSS X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SHQPAVATKM(1)PEEM(1)DK SHQPAVATKM(84.86)PEEM(84.86)DK 14 3 -0.87165 1140100 0 1140100 0 NaN 0 0 0 1140100 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1140100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 890 1459 15 15 3951 4494 12536 13150 12536 13150 20190902_JH_EV_Ubi_2 4402 12536 13150 20190902_JH_EV_Ubi_2 4402 12536 13150 20190902_JH_EV_Ubi_2 4402 sp|Q659C4-8|LAR1B_HUMAN 11 sp|Q659C4-8|LAR1B_HUMAN sp|Q659C4-8|LAR1B_HUMAN sp|Q659C4-8|LAR1B_HUMAN Isoform 8 of La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B 1 74.9616 0.0158808 83.081 44.501 74.962 1 70.4116 0.0233859 70.412 1 77.7442 0.0206967 77.744 1 83.0814 0.0158808 83.081 1 74.9616 0.0234988 74.962 1 M _____MRNLDNLLGKMQKKITGQLYGLEKFW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPXXXXXXXXXXXXX RNLDNLLGKM(1)QK RNLDNLLGKM(74.96)QK 10 3 -0.31796 16894000 16894000 0 0 NaN 0 0 9440800 0 0 945030 0 3535700 2972600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 9440800 0 0 0 0 0 0 0 0 945030 0 0 0 0 0 3535700 0 0 2972600 0 0 891 1460 11 11 3772 4286 11942;11943;11944;11945 12525;12526;12527;12528 11945 12528 20190902_JH_WT_Ubi_3 11702 11944 12527 20190902_JH_WT_Ubi_2 12184 11944 12527 20190902_JH_WT_Ubi_2 12184 sp|Q66K66|TM198_HUMAN 260 sp|Q66K66|TM198_HUMAN sp|Q66K66|TM198_HUMAN sp|Q66K66|TM198_HUMAN Transmembrane protein 198 OS=Homo sapiens OX=9606 GN=TMEM198 PE=1 SV=1 1 64.4386 0.030123 64.439 28.793 64.439 1 64.4386 0.030123 64.439 1 M HTEVVISRQRRRVQLMRIRQQEDRKEKRRKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPXXXXXXX VQLM(1)RIRQQEDR VQLM(64.44)RIRQQEDR 4 3 -1.918 1138400 1138400 0 0 NaN 0 0 0 1138400 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1138400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 892 1461 260 260 4994 5666 16031 16841 16031 16841 20190902_JH_EV_Ubi_2 5943 16031 16841 20190902_JH_EV_Ubi_2 5943 16031 16841 20190902_JH_EV_Ubi_2 5943 sp|Q68DH5|LMBD2_HUMAN 287 sp|Q68DH5|LMBD2_HUMAN sp|Q68DH5|LMBD2_HUMAN sp|Q68DH5|LMBD2_HUMAN LMBR1 domain-containing protein 2 OS=Homo sapiens OX=9606 GN=LMBRD2 PE=1 SV=1 1 40.8441 0.0196067 47.64 32.134 40.844 1 47.6398 0.0196067 47.64 1 43.2605 0.0266498 43.261 1 40.8441 0.0342279 40.844 1 M LKKCPTEYQEKMGRNMDDYEDFDEKHSIYPS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)DDYEDFDEKHSIYPSEK NM(40.84)DDYEDFDEKHSIYPSEK 2 4 -0.17774 7200600 7200600 0 0 NaN 0 0 0 2694600 2373600 0 2132400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2694600 0 0 2373600 0 0 0 0 0 2132400 0 0 0 0 0 0 0 0 893 1464 287 287 3158 3608 10159;10160;10161 10696;10697;10698 10161 10698 20190902_JH_MUT_Ubi_3 7036 10159 10696 20190902_JH_EV_Ubi_2 6993 10159 10696 20190902_JH_EV_Ubi_2 6993 sp|Q6EMK4|VASN_HUMAN 605 sp|Q6EMK4|VASN_HUMAN sp|Q6EMK4|VASN_HUMAN sp|Q6EMK4|VASN_HUMAN Vasorin OS=Homo sapiens OX=9606 GN=VASN PE=1 SV=1 1 78.1084 1.75718E-43 177.24 148.5 78.108 1 132.238 1.14176E-15 132.24 1 78.1084 1.9458E-15 130.19 1 63.4266 7.48292E-26 149.12 1 118.215 2.94616E-12 118.21 1 177.245 1.75718E-43 177.24 1 143.739 3.95849E-20 143.74 1 115.31 4.67125E-12 115.31 1 114.841 4.9501E-12 114.84 1 M LAAVGAAYCVRRGRAMAAAAQDKGQVGPGAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;Deamidation (NQ);X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP AM(1)AAAAQDKGQVGPGAGPLELEGVKVPLEPGPK AM(78.11)AAAAQDKGQVGPGAGPLELEGVKVPLEPGPK 2 4 -0.59182 82357000 82357000 0 0 9.9716 16112000 6508800 0 14006000 19414000 8017700 5835300 3207800 2686500 NaN 3.1917 NaN 9.4516 NaN 3.0669 2.7477 NaN NaN 16112000 0 0 6508800 0 0 0 0 0 14006000 0 0 19414000 0 0 8017700 0 0 5835300 0 0 3207800 0 0 2686500 0 0 894 1468 605 605 223;224 254;256 734;735;736;737;738;739;740;741;746;747 803;804;805;806;807;808;809;810;815;816 747 816 20190821_JH_MUT_Ubi 9144 738 807 20190902_JH_MUT_Ubi_2 8543 738 807 20190902_JH_MUT_Ubi_2 8543 sp|Q6IA69-2|NADE_HUMAN;sp|Q6IA69|NADE_HUMAN 390;650 sp|Q6IA69-2|NADE_HUMAN sp|Q6IA69-2|NADE_HUMAN sp|Q6IA69-2|NADE_HUMAN Isoform 2 of Glutamine-dependent NAD(+) synthetase OS=Homo sapiens OX=9606 GN=NADSYN1;sp|Q6IA69|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens OX=9606 GN=NADSYN1 PE=1 SV=3 1 62.5893 0.00305078 62.589 40.472 62.589 1 62.5893 0.00305078 62.589 1 M KVKRFFSKYSMNRHKMTTLTPAYHAENYSPE X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP HKM(1)TTLTPAYHAENYSPEDNR HKM(62.59)TTLTPAYHAENYSPEDNR 3 4 1.4968 3033400 3033400 0 0 NaN 0 0 0 0 0 0 0 0 3033400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3033400 0 0 895 1470 390 390 1888 2146 6100 6421 6100 6421 20190902_JH_WT_Ubi_3 6059 6100 6421 20190902_JH_WT_Ubi_3 6059 6100 6421 20190902_JH_WT_Ubi_3 6059 sp|Q6J9G0|STYK1_HUMAN 355 sp|Q6J9G0|STYK1_HUMAN sp|Q6J9G0|STYK1_HUMAN sp|Q6J9G0|STYK1_HUMAN Tyrosine-protein kinase STYK1 OS=Homo sapiens OX=9606 GN=STYK1 PE=1 SV=4 1 41.6438 0.0291425 41.644 14.701 41.644 1 41.6438 0.0291425 41.644 2 M QRRKIMKRPSSCTHTMYSIMKSCWRWREADR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPXXXXXXXXXX RPSSCTHTM(1)YSIM(1)K RPSSCTHTM(41.64)YSIM(41.64)K 9 3 0.59834 12037000 0 12037000 0 NaN 0 0 12037000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 12037000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 896 1473 355 355 3793 4309 12001 12590 12001 12590 20190821_JH_WT_Ubi 11211 12001 12590 20190821_JH_WT_Ubi 11211 12001 12590 20190821_JH_WT_Ubi 11211 sp|Q6J9G0|STYK1_HUMAN 359 sp|Q6J9G0|STYK1_HUMAN sp|Q6J9G0|STYK1_HUMAN sp|Q6J9G0|STYK1_HUMAN Tyrosine-protein kinase STYK1 OS=Homo sapiens OX=9606 GN=STYK1 PE=1 SV=4 1 41.6438 0.0291425 41.644 14.701 41.644 1 41.6438 0.0291425 41.644 2 M IMKRPSSCTHTMYSIMKSCWRWREADRPSPR X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPXXXXXXXXXXXXXX RPSSCTHTM(1)YSIM(1)K RPSSCTHTM(41.64)YSIM(41.64)K 13 3 0.59834 12037000 0 12037000 0 NaN 0 0 12037000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 12037000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897 1473 359 359 3793 4309 12001 12590 12001 12590 20190821_JH_WT_Ubi 11211 12001 12590 20190821_JH_WT_Ubi 11211 12001 12590 20190821_JH_WT_Ubi 11211 sp|Q6KC79-2|NIPBL_HUMAN;sp|Q6KC79|NIPBL_HUMAN 1385;1385 sp|Q6KC79-2|NIPBL_HUMAN sp|Q6KC79-2|NIPBL_HUMAN sp|Q6KC79-2|NIPBL_HUMAN Isoform 2 of Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL;sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2 1 75.3782 0.0211554 75.378 29.22 75.378 1 75.3782 0.0211554 75.378 1 M AKRAKCSTHKQRVIVMLYNKVCDIVSSLSEL X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPXXXXXXXXXXX QRVIVM(1)LYNK QRVIVM(75.38)LYNK 6 3 0.59137 1592800 1592800 0 0 NaN 0 0 1592800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1592800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 898 1474 1385 1385 3697 4208 11769 12350 11769 12350 20190821_JH_WT_Ubi 9524 11769 12350 20190821_JH_WT_Ubi 9524 11769 12350 20190821_JH_WT_Ubi 9524 sp|Q6NUK1|SCMC1_HUMAN;sp|Q6NUK1-2|SCMC1_HUMAN 297;278 sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 PE=1 SV=2;sp|Q6NUK1-2|SCMC1_HUMAN Isoform 2 of Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 1 50.2365 0.00691483 50.237 22.154 50.237 1 50.2365 0.00691483 50.237 3 M EGQKIGTFERFISGSMAGATAQTFIYPMEVM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M) XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP FISGSM(1)AGATAQTFIYPM(1)EVM(1)K FISGSM(50.24)AGATAQTFIYPM(50.24)EVM(50.24)K 6 3 0.23464 1774400 0 0 1774400 NaN 0 0 0 0 0 0 0 0 1774400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774400 899 1475 297 297 1226 1384 3886 4090 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 sp|Q6NUK1|SCMC1_HUMAN;sp|Q6NUK1-2|SCMC1_HUMAN 309;290 sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 PE=1 SV=2;sp|Q6NUK1-2|SCMC1_HUMAN Isoform 2 of Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 1 50.2365 0.00691483 50.237 22.154 50.237 1 50.2365 0.00691483 50.237 3 M SGSMAGATAQTFIYPMEVMKTRLAVGKTGQY X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX FISGSM(1)AGATAQTFIYPM(1)EVM(1)K FISGSM(50.24)AGATAQTFIYPM(50.24)EVM(50.24)K 18 3 0.23464 1774400 0 0 1774400 NaN 0 0 0 0 0 0 0 0 1774400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774400 900 1475 309 309 1226 1384 3886 4090 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 sp|Q6NUK1|SCMC1_HUMAN;sp|Q6NUK1-2|SCMC1_HUMAN 312;293 sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN sp|Q6NUK1|SCMC1_HUMAN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 PE=1 SV=2;sp|Q6NUK1-2|SCMC1_HUMAN Isoform 2 of Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens OX=9606 GN=SLC25A24 1 50.2365 0.00691483 50.237 22.154 50.237 1 50.2365 0.00691483 50.237 3 M MAGATAQTFIYPMEVMKTRLAVGKTGQYSGI Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX FISGSM(1)AGATAQTFIYPM(1)EVM(1)K FISGSM(50.24)AGATAQTFIYPM(50.24)EVM(50.24)K 21 3 0.23464 1774400 0 0 1774400 NaN 0 0 0 0 0 0 0 0 1774400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774400 901 1475 312 312 1226 1384 3886 4090 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 3886 4090 20190902_JH_WT_Ubi_3 11875 sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN;sp|Q6NZI2-3|CAVN1_HUMAN 341;251;149 sp|Q6NZI2|CAVN1_HUMAN sp|Q6NZI2|CAVN1_HUMAN sp|Q6NZI2|CAVN1_HUMAN Caveolae-associated protein 1 OS=Homo sapiens OX=9606 GN=CAVIN1 PE=1 SV=1;sp|Q6NZI2-2|CAVN1_HUMAN Isoform 2 of Caveolae-associated protein 1 OS=Homo sapiens OX=9606 GN=CAVIN1;sp|Q6NZI2-3|CAVN1_HUMAN Isoform 3 of Caveolae-associated pr 1 203.286 5.05073E-64 203.29 171.47 203.29 1 101.417 8.42808E-10 101.42 1 142.137 3.80189E-20 142.14 1 198.734 1.12647E-63 198.73 1 203.286 5.05073E-64 203.29 1 M KKIREGQVEVLKATEMVEVGADDDEGGAERG X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPPPPPX EGQVEVLKATEM(1)VEVGADDDEGGAER EGQVEVLKATEM(203.29)VEVGADDDEGGAER 12 3 -0.84489 15108000 15108000 0 0 1.3765 1174000 772390 4756600 0 0 0 0 3285100 0 NaN 0.50969 0.62631 NaN NaN 0 0 NaN NaN 1174000 0 0 772390 0 0 4756600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3285100 0 0 0 0 0 902 1476 341 341 298;908 349;1026 1000;2872;2873;2874;2875 1083;3024;3025;3026;3027;3028 2875 3028 20190902_JH_WT_Ubi_2 10662 2875 3028 20190902_JH_WT_Ubi_2 10662 2875 3028 20190902_JH_WT_Ubi_2 10662 sp|Q6NZI2|CAVN1_HUMAN 154 sp|Q6NZI2|CAVN1_HUMAN sp|Q6NZI2|CAVN1_HUMAN sp|Q6NZI2|CAVN1_HUMAN Caveolae-associated protein 1 OS=Homo sapiens OX=9606 GN=CAVIN1 PE=1 SV=1 1 120.551 0.000246269 128.08 66.601 120.55 1 91.1231 0.00783322 91.123 1 108.564 0.00205137 108.56 1 98.1049 0.00493716 98.105 1 83.1372 0.0123288 83.137 1 128.081 0.000246269 128.08 1 120.551 0.000611899 120.55 1 M EVNEAELLRRRNFKVMIYQDEVKLPAKLSIS X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX NFKVM(1)IYQDEVK NFKVM(120.55)IYQDEVK 5 3 -0.67526 26645000 26645000 0 0 2.2212 0 1977200 7284000 0 0 2057600 3269000 5651800 6405400 NaN 1.1168 1.2064 NaN NaN 1.2152 NaN NaN 2.5681 0 0 0 1977200 0 0 7284000 0 0 0 0 0 0 0 0 2057600 0 0 3269000 0 0 5651800 0 0 6405400 0 0 903 1476 154 154 3054 3490 9850;9851;9852;9853;9854;9855 10374;10375;10376;10377;10378;10379;10380 9855 10379 20190902_JH_WT_Ubi_3 8596 9854 10378 20190902_JH_WT_Ubi_2 9020 9854 10378 20190902_JH_WT_Ubi_2 9020 sp|Q6P2E9-2|EDC4_HUMAN;sp|Q6P2E9|EDC4_HUMAN 807;1188 sp|Q6P2E9-2|EDC4_HUMAN sp|Q6P2E9-2|EDC4_HUMAN sp|Q6P2E9-2|EDC4_HUMAN Isoform 2 of Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4;sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1 1 142.272 4.56818E-16 142.27 97.538 142.27 1 98.2917 1.87751E-06 98.292 1 142.272 4.56818E-16 142.27 1 M QLRGLVSTLQSATEQMAATVAGSVRAEVQHQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPXXXXXX GLVSTLQSATEQM(1)AATVAGSVR GLVSTLQSATEQM(142.27)AATVAGSVR 13 3 0.53477 5501900 5501900 0 0 1.9581 4254100 0 0 0 1247800 0 0 0 0 1.514 NaN NaN NaN NaN NaN NaN NaN NaN 4254100 0 0 0 0 0 0 0 0 0 0 0 1247800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 904 1480 807 807 1618 1842 5191;5192 5465;5466 5192 5466 20190902_JH_EV_Ubi_3 11204 5192 5466 20190902_JH_EV_Ubi_3 11204 5192 5466 20190902_JH_EV_Ubi_3 11204 sp|Q6PI48|SYDM_HUMAN 563 sp|Q6PI48|SYDM_HUMAN sp|Q6PI48|SYDM_HUMAN sp|Q6PI48|SYDM_HUMAN Aspartate--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=DARS2 PE=1 SV=1 1 48.5972 0.00866383 48.597 19.323 48.597 1 48.5972 0.00866383 48.597 1 M LQRYILATLLKEDVKMLSHLLQALDYGAPPH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LSHLLQALDYGAPPHGGIALGLDR M(48.6)LSHLLQALDYGAPPHGGIALGLDR 1 4 -0.87084 4006900 4006900 0 0 NaN 0 0 4006900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4006900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 905 1484 563 563 2944 3346 9483 9983 9483 9983 20190821_JH_WT_Ubi 11835 9483 9983 20190821_JH_WT_Ubi 11835 9483 9983 20190821_JH_WT_Ubi 11835 sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN;sp|Q6S8J3-3|POTEE_HUMAN;sp|Q6S8J3-2|POTEE_HUMAN 91;91;91;91 sp|Q6S8J3|POTEE_HUMAN sp|Q6S8J3|POTEE_HUMAN sp|Q6S8J3|POTEE_HUMAN POTE ankyrin domain family member E OS=Homo sapiens OX=9606 GN=POTEE PE=2 SV=3;sp|A5A3E0|POTEF_HUMAN POTE ankyrin domain family member F OS=Homo sapiens OX=9606 GN=POTEF PE=1 SV=2;sp|Q6S8J3-3|POTEE_HUMAN Isoform 3 of POTE ankyrin doma 1 55.7818 0.000165226 101.01 66.002 55.782 1 60.5411 0.0137192 60.541 1 101.009 0.000165226 101.01 1 55.7818 0.0206494 55.782 1 M GKSNVGASGDHDDSAMKTLRNKMGKWCCHCF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPXXXXXXXXXXX SNVGASGDHDDSAM(1)KTLR SNVGASGDHDDSAM(55.78)KTLR 14 3 -1.4907 5791200 5791200 0 0 NaN 1577200 0 0 2174800 0 0 0 2039300 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1577200 0 0 0 0 0 0 0 0 2174800 0 0 0 0 0 0 0 0 0 0 0 2039300 0 0 0 0 0 906 1490 91 91 4095 4648 12941;12942;12943 13570;13571;13572 12943 13572 20190902_JH_WT_Ubi_2 4683 12942 13571 20190902_JH_EV_Ubi_2 3854 12942 13571 20190902_JH_EV_Ubi_2 3854 sp|Q6ZTR5-2|CFA47_HUMAN;sp|Q6ZTR5-1|CFA47_HUMAN;sp|Q6ZTR5-6|CFA47_HUMAN;sp|Q6ZTR5|CFA47_HUMAN 489;489;489;489 sp|Q6ZTR5-2|CFA47_HUMAN sp|Q6ZTR5-2|CFA47_HUMAN sp|Q6ZTR5-2|CFA47_HUMAN Isoform 2 of Cilia- and flagella-associated protein 47 OS=Homo sapiens OX=9606 GN=CFAP47;sp|Q6ZTR5-1|CFA47_HUMAN Isoform 1 of Cilia- and flagella-associated protein 47 OS=Homo sapiens OX=9606 GN=CFAP47;sp|Q6ZTR5-6|CFA47_HUMAN Isofor 1 62.2028 0.0117418 62.203 14.474 62.203 1 62.2028 0.0117418 62.203 1 M CSFVPHQLGVFKVKQMIEIIGLVAEEDLQSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP QM(1)IEIIGLVAEEDLQSLSVK QM(62.2)IEIIGLVAEEDLQSLSVK 2 3 3.0221 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 907 1507 489 489 3670 4179 11727 12306 11727 12306 20190821_JH_EV_Ubi 9532 11727 12306 20190821_JH_EV_Ubi 9532 11727 12306 20190821_JH_EV_Ubi 9532 sp|Q6ZVM7-3|TM1L2_HUMAN;sp|Q6ZVM7-5|TM1L2_HUMAN;sp|Q6ZVM7|TM1L2_HUMAN;sp|Q6ZVM7-4|TM1L2_HUMAN;sp|Q6ZVM7-2|TM1L2_HUMAN 428;449;473;206;423 sp|Q6ZVM7-3|TM1L2_HUMAN sp|Q6ZVM7-3|TM1L2_HUMAN sp|Q6ZVM7-3|TM1L2_HUMAN Isoform 3 of TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2;sp|Q6ZVM7-5|TM1L2_HUMAN Isoform 5 of TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2;sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L 1 136.366 1.85209E-20 136.37 102.36 136.37 1 65.8362 0.000385888 65.836 1 81.5252 3.32673E-05 81.525 1 136.366 1.85209E-20 136.37 2 M EEFDKFLEERAKAAEMVPDLPSPPMEAPAPA X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP AKAAEM(1)VPDLPSPPM(1)EAPAPASNPSGR AKAAEM(136.37)VPDLPSPPM(136.37)EAPAPASNPSGR 6 3 -0.65054 2211600 0 2211600 0 NaN 0 0 0 883440 551180 0 776950 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 883440 0 0 551180 0 0 0 0 0 776950 0 0 0 0 0 0 0 908 1509 428 428 178 204 599;600;601 654;655;656;657;658 601 658 20190902_JH_MUT_Ubi_3 8233 601 658 20190902_JH_MUT_Ubi_3 8233 601 658 20190902_JH_MUT_Ubi_3 8233 sp|Q6ZVM7-3|TM1L2_HUMAN;sp|Q6ZVM7-5|TM1L2_HUMAN;sp|Q6ZVM7|TM1L2_HUMAN;sp|Q6ZVM7-4|TM1L2_HUMAN;sp|Q6ZVM7-2|TM1L2_HUMAN 437;458;482;215;432 sp|Q6ZVM7-3|TM1L2_HUMAN sp|Q6ZVM7-3|TM1L2_HUMAN sp|Q6ZVM7-3|TM1L2_HUMAN Isoform 3 of TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2;sp|Q6ZVM7-5|TM1L2_HUMAN Isoform 5 of TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2;sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L 1 136.366 1.85209E-20 136.37 102.36 136.37 1 65.8362 0.000385888 65.836 1 81.5252 3.32673E-05 81.525 1 136.366 1.85209E-20 136.37 2 M RAKAAEMVPDLPSPPMEAPAPASNPSGRKKP X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX AKAAEM(1)VPDLPSPPM(1)EAPAPASNPSGR AKAAEM(136.37)VPDLPSPPM(136.37)EAPAPASNPSGR 15 3 -0.65054 2211600 0 2211600 0 NaN 0 0 0 883440 551180 0 776950 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 883440 0 0 551180 0 0 0 0 0 776950 0 0 0 0 0 0 0 909 1509 437 437 178 204 599;600;601 654;655;656;657;658 601 658 20190902_JH_MUT_Ubi_3 8233 601 658 20190902_JH_MUT_Ubi_3 8233 601 658 20190902_JH_MUT_Ubi_3 8233 sp|Q70CQ2-3|UBP34_HUMAN;sp|Q70CQ2-2|UBP34_HUMAN;sp|Q70CQ2|UBP34_HUMAN 1815;1815;1966 sp|Q70CQ2-3|UBP34_HUMAN sp|Q70CQ2-3|UBP34_HUMAN sp|Q70CQ2-3|UBP34_HUMAN Isoform 3 of Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens OX=9606 GN=USP34;sp|Q70CQ2-2|UBP34_HUMAN Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens OX=9606 GN=USP34;sp|Q70CQ2|UBP34_HUMAN Ubiquitin ca 1 63.7268 0.0175476 65.565 36.925 63.727 1 65.5646 0.0175476 65.565 1 54.0901 0.0366646 54.09 1 63.7268 0.0274683 63.727 1 M ECKAYNPRPFCKTYTMDKQPLNTGEQKDMTE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPXXXX TYTM(1)DKQPLNTGEQK TYTM(63.73)DKQPLNTGEQK 4 3 -0.021987 5591700 5591700 0 0 NaN 1176500 0 0 2163300 2251900 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1176500 0 0 0 0 0 0 0 0 2163300 0 0 2251900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 910 1511 1815 1815 4702 5335 15084;15085;15086 15851;15852;15853 15086 15853 20190902_JH_EV_Ubi_3 4484 15084 15851 20190821_JH_EV_Ubi 3828 15084 15851 20190821_JH_EV_Ubi 3828 sp|Q71DI3|H32_HUMAN 91 sp|Q71DI3|H32_HUMAN sp|Q71DI3|H32_HUMAN sp|Q71DI3|H32_HUMAN Histone H3.2 OS=Homo sapiens OX=9606 GN=HIST2H3A PE=1 SV=3 1 123.622 9.23941E-22 123.62 100.38 123.62 1 123.622 9.23941E-22 123.62 1 M AQDFKTDLRFQSSAVMALQEASEAYLVGLFE X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP FQSSAVM(1)ALQEASEAYLVGLFEDTNLCAIHAK FQSSAVM(123.62)ALQEASEAYLVGLFEDTNLCAIHAK 7 3 0.38177 1264200 1264200 0 0 NaN 0 0 0 0 0 0 0 1264200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1264200 0 0 0 0 0 911 1514 91 91 1289 1461 4072 4282 4072 4282 20190902_JH_WT_Ubi_2 16561 4072 4282 20190902_JH_WT_Ubi_2 16561 4072 4282 20190902_JH_WT_Ubi_2 16561 sp|Q7KZF4|SND1_HUMAN 670 sp|Q7KZF4|SND1_HUMAN sp|Q7KZF4|SND1_HUMAN sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SND1 PE=1 SV=1 1 99.0922 0.00136211 99.092 64.442 99.092 1 99.0922 0.00136211 99.092 1 M EKVWAHYEEQPVEEVMPVLEEKERSASYKPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPXXXXXXXXX VWAHYEEQPVEEVM(1)PVLEEK VWAHYEEQPVEEVM(99.09)PVLEEK 14 3 1.3137 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 912 1518 670 670 5079 5773 16390 17224 16390 17224 20190821_JH_WT_Ubi 9165 16390 17224 20190821_JH_WT_Ubi 9165 16390 17224 20190821_JH_WT_Ubi 9165 sp|Q7L099|RUFY3_HUMAN;sp|Q7L099-2|RUFY3_HUMAN;sp|Q7L099-4|RUFY3_HUMAN;sp|Q7L099-3|RUFY3_HUMAN 180;240;127;180 sp|Q7L099|RUFY3_HUMAN sp|Q7L099|RUFY3_HUMAN sp|Q7L099|RUFY3_HUMAN Protein RUFY3 OS=Homo sapiens OX=9606 GN=RUFY3 PE=1 SV=1;sp|Q7L099-2|RUFY3_HUMAN Isoform 2 of Protein RUFY3 OS=Homo sapiens OX=9606 GN=RUFY3;sp|Q7L099-4|RUFY3_HUMAN Isoform 4 of Protein RUFY3 OS=Homo sapiens OX=9606 GN=RUFY3;sp|Q7L099 1 72.5312 0.0279729 72.531 7.2994 72.531 1 72.5312 0.0279729 72.531 1 M AWLRLALMQKKLSEYMKALINKKELLSEFYE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX LSEYM(1)KALINKK LSEYM(72.53)KALINKK 5 3 -4.0219 770900 770900 0 0 NaN 0 0 0 770900 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 770900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 913 1521 180 180 2804 3180 9040 9511 9040 9511 20190902_JH_EV_Ubi_2 6679 9040 9511 20190902_JH_EV_Ubi_2 6679 9040 9511 20190902_JH_EV_Ubi_2 6679 sp|Q7Z392-4|TPC11_HUMAN;sp|Q7Z392-3|TPC11_HUMAN;sp|Q7Z392|TPC11_HUMAN 17;17;17 sp|Q7Z392-4|TPC11_HUMAN sp|Q7Z392-4|TPC11_HUMAN sp|Q7Z392-4|TPC11_HUMAN Isoform 4 of Trafficking protein particle complex subunit 11 OS=Homo sapiens OX=9606 GN=TRAPPC11;sp|Q7Z392-3|TPC11_HUMAN Isoform 3 of Trafficking protein particle complex subunit 11 OS=Homo sapiens OX=9606 GN=TRAPPC11;sp|Q7Z392|TPC1 1 61.4954 2.55843E-05 107.63 80.299 61.495 1 107.635 2.55843E-05 107.63 1 61.4954 0.00717784 61.495 1 M SPTQWDFPVELCCRPMAFVTLTGLDVVYNAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP PM(1)AFVTLTGLDVVYNAVHR PM(61.5)AFVTLTGLDVVYNAVHR 2 3 -0.98296 2667100 2667100 0 0 NaN 0 0 2039400 0 0 0 0 0 627630 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2039400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 627630 0 0 914 1527 17 17 3458 3944 11094;11095 11659;11660 11095 11660 20190902_JH_WT_Ubi_3 14330 11094 11659 20190821_JH_WT_Ubi 13640 11094 11659 20190821_JH_WT_Ubi 13640 sp|Q7Z3B3-4|KANL1_HUMAN 66 sp|Q7Z3B3-4|KANL1_HUMAN sp|Q7Z3B3-4|KANL1_HUMAN sp|Q7Z3B3-4|KANL1_HUMAN Isoform 3 of KAT8 regulatory NSL complex subunit 1 OS=Homo sapiens OX=9606 GN=KANSL1 1 64.82 0.030815 64.82 23.116 64.82 1 64.82 0.030815 64.82 1 M RKDRHKLVSSFLTTAMLKHHTDMSSSSYLAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPXXXXXXXXXXXXX LVSSFLTTAM(1)LK LVSSFLTTAM(64.82)LK 10 3 3.1311 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 915 1528 66 66 2860 3243 9229 9714 9229 9714 20190902_JH_WT_Ubi_3 5265 9229 9714 20190902_JH_WT_Ubi_3 5265 9229 9714 20190902_JH_WT_Ubi_3 5265 sp|Q7Z3J2-2|CP062_HUMAN;sp|Q7Z3J2|CP062_HUMAN 513;663 sp|Q7Z3J2-2|CP062_HUMAN sp|Q7Z3J2-2|CP062_HUMAN sp|Q7Z3J2-2|CP062_HUMAN Isoform 2 of UPF0505 protein C16orf62 OS=Homo sapiens OX=9606 GN=C16orf62;sp|Q7Z3J2|CP062_HUMAN UPF0505 protein C16orf62 OS=Homo sapiens OX=9606 GN=C16orf62 PE=1 SV=2 1 67.9024 0.00378814 67.902 44.103 67.902 1 44.5871 0.0303735 44.587 1 67.9024 0.00378814 67.902 1 M RDFEQQLSFYVESRSMFCNLEPVLVQLIHSV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP SM(1)FCNLEPVLVQLIHSVNR SM(67.9)FCNLEPVLVQLIHSVNR 2 3 2.9882 3344000 3344000 0 0 6.6426 0 1683600 1660400 0 0 0 0 0 0 NaN 3.3443 NaN NaN NaN NaN NaN NaN NaN 0 0 0 1683600 0 0 1660400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 916 1529 513 513 4069 4618 12883;12884 13509;13510 12884 13510 20190821_JH_WT_Ubi 15007 12884 13510 20190821_JH_WT_Ubi 15007 12884 13510 20190821_JH_WT_Ubi 15007 sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN 3794;3801;3810 sp|Q7Z6Z7-2|HUWE1_HUMAN sp|Q7Z6Z7-2|HUWE1_HUMAN sp|Q7Z6Z7-2|HUWE1_HUMAN Isoform 2 of E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens OX=9606 GN=HUWE1;sp|Q7Z6Z7-3|HUWE1_HUMAN Isoform 3 of E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens OX=9606 GN=HUWE1;sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligas 1 45.7495 0.000498945 55.406 36.028 45.749 1 48.6546 0.00290548 48.655 1 45.7495 0.00529547 45.749 1 46.7828 0.00444534 46.783 1 41.5514 0.00874913 41.551 1 55.4063 0.000498945 55.406 1 M ESSQSEASVRREESPMDVDQPSPSAQDTQSI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP REESPM(1)DVDQPSPSAQDTQSIASDGTPQGEKEK REESPM(45.75)DVDQPSPSAQDTQSIASDGTPQGEKEK 6 4 0.69695 5784000 5784000 0 0 NaN 0 649230 1528800 1666400 1091600 0 847940 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 649230 0 0 1528800 0 0 1666400 0 0 1091600 0 0 0 0 0 847940 0 0 0 0 0 0 0 0 917 1539 3794 3794 3735 4249 11850;11851;11852;11853;11854 12432;12433;12434;12435;12436 11854 12436 20190821_JH_WT_Ubi 5311 11853 12435 20190902_JH_MUT_Ubi_3 5853 11853 12435 20190902_JH_MUT_Ubi_3 5853 sp|Q86TG1-2|T150A_HUMAN;sp|Q86TG1|T150A_HUMAN 217;270 sp|Q86TG1-2|T150A_HUMAN sp|Q86TG1-2|T150A_HUMAN sp|Q86TG1-2|T150A_HUMAN Isoform 2 of Transmembrane protein 150A OS=Homo sapiens OX=9606 GN=TMEM150A;sp|Q86TG1|T150A_HUMAN Transmembrane protein 150A OS=Homo sapiens OX=9606 GN=TMEM150A PE=1 SV=1 1 47.75 0.002239 64.203 43.003 47.75 1 50.2259 0.0136142 50.226 1 64.203 0.002239 64.203 1 47.75 0.0200148 47.75 1 M SSTSTHLNCAPESIAMI______________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX ACKSSGSSSTSTHLNCAPESIAM(1)I ACKSSGSSSTSTHLNCAPESIAM(47.75)I 23 3 1.6447 6840200 6840200 0 0 NaN 0 0 2411800 0 0 1554900 0 2873500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2411800 0 0 0 0 0 0 0 0 1554900 0 0 0 0 0 2873500 0 0 0 0 0 918 1545 217 217 45 51 151;152;153 166;167;168 153 168 20190902_JH_WT_Ubi_2 8870 151 166 20190902_JH_MUT_Ubi_2 7675 151 166 20190902_JH_MUT_Ubi_2 7675 sp|Q86TG7|PEG10_HUMAN;sp|Q86TG7-2|PEG10_HUMAN 21;21 sp|Q86TG7|PEG10_HUMAN sp|Q86TG7|PEG10_HUMAN sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=Homo sapiens OX=9606 GN=PEG10 PE=1 SV=2;sp|Q86TG7-2|PEG10_HUMAN Isoform 2 of Retrotransposon-derived protein PEG10 OS=Homo sapiens OX=9606 GN=PEG10 1 142.453 1.5081E-19 168.47 106.09 142.45 1 168.469 1.5081E-19 168.47 1 142.453 3.08416E-10 142.45 1 M RDELSEEINNLREKVMKQSEENNNLQSQVQK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)KQSEENNNLQSQVQK VM(142.45)KQSEENNNLQSQVQK 2 3 0.9273 1196400 1196400 0 0 NaN 0 467460 0 0 0 0 728960 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 467460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 728960 0 0 0 0 0 0 0 0 919 1546 21 21 4942 5612 15881;15882 16687;16688 15882 16688 20190902_JH_MUT_Ubi_3 4273 15881 16687 20190821_JH_MUT_Ubi 3176 15881 16687 20190821_JH_MUT_Ubi 3176 sp|Q86UL3|GPAT4_HUMAN 332 sp|Q86UL3|GPAT4_HUMAN sp|Q86UL3|GPAT4_HUMAN sp|Q86UL3|GPAT4_HUMAN Glycerol-3-phosphate acyltransferase 4 OS=Homo sapiens OX=9606 GN=GPAT4 PE=1 SV=1 1 40.756 0.0303534 40.756 16.208 40.756 1 40.756 0.0303534 40.756 2 M ILIFPEGTCINNTSVMMFKKGSFEIGATVYP X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX SKLPILIFPEGTCINNTSVM(1)M(1)FKK SKLPILIFPEGTCINNTSVM(40.76)M(40.76)FKK 20 3 2.651 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 920 1551 332 332 3988 4533 12649 13267 12649 13267 20190902_JH_EV_Ubi_3 11805 12649 13267 20190902_JH_EV_Ubi_3 11805 12649 13267 20190902_JH_EV_Ubi_3 11805 sp|Q86UL3|GPAT4_HUMAN 333 sp|Q86UL3|GPAT4_HUMAN sp|Q86UL3|GPAT4_HUMAN sp|Q86UL3|GPAT4_HUMAN Glycerol-3-phosphate acyltransferase 4 OS=Homo sapiens OX=9606 GN=GPAT4 PE=1 SV=1 1 40.756 0.0303534 40.756 16.208 40.756 1 40.756 0.0303534 40.756 2 M LIFPEGTCINNTSVMMFKKGSFEIGATVYPV X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SKLPILIFPEGTCINNTSVM(1)M(1)FKK SKLPILIFPEGTCINNTSVM(40.76)M(40.76)FKK 21 3 2.651 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 921 1551 333 333 3988 4533 12649 13267 12649 13267 20190902_JH_EV_Ubi_3 11805 12649 13267 20190902_JH_EV_Ubi_3 11805 12649 13267 20190902_JH_EV_Ubi_3 11805 sp|Q86UW9-2|DTX2_HUMAN;sp|Q86UW9|DTX2_HUMAN 218;218 sp|Q86UW9-2|DTX2_HUMAN sp|Q86UW9-2|DTX2_HUMAN sp|Q86UW9-2|DTX2_HUMAN Isoform 2 of Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2;sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2 PE=1 SV=3 1 43.4542 0.0278591 43.454 15.471 43.454 1 43.4542 0.0278591 43.454 1 M SGSRTGPVSGRYRHSMTNLPAYPVPQHPPHR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP HSM(1)TNLPAYPVPQHPPHR HSM(43.45)TNLPAYPVPQHPPHR 3 4 -0.064744 1470700 1470700 0 0 NaN 0 0 0 1470700 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1470700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 922 1552 218 218 1995 2273 6533 6873 6533 6873 20190902_JH_EV_Ubi_2 5267 6533 6873 20190902_JH_EV_Ubi_2 5267 6533 6873 20190902_JH_EV_Ubi_2 5267 sp|Q86UW9-2|DTX2_HUMAN;sp|Q86UW9|DTX2_HUMAN 441;488 sp|Q86UW9-2|DTX2_HUMAN sp|Q86UW9-2|DTX2_HUMAN sp|Q86UW9-2|DTX2_HUMAN Isoform 2 of Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2;sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2 PE=1 SV=3 1 62.298 0.0319429 62.298 24.773 62.298 1 62.298 0.0319429 62.298 1 M KTIYGEKTGTQPQGKMEVLRFQMSLPGHEDC X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPXXXXXXXXXXX TGTQPQGKM(1)EVLR TGTQPQGKM(62.3)EVLR 9 3 -0.13542 347540 347540 0 0 NaN 0 347540 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 347540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 923 1552 441 441 4392 4985 13919 14609 13919 14609 20190821_JH_MUT_Ubi 3132 13919 14609 20190821_JH_MUT_Ubi 3132 13919 14609 20190821_JH_MUT_Ubi 3132 sp|Q86V81|THOC4_HUMAN 176 sp|Q86V81|THOC4_HUMAN sp|Q86V81|THOC4_HUMAN sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens OX=9606 GN=ALYREF PE=1 SV=3 1 80.3867 0.00370536 80.387 38.07 80.387 1 52.9657 0.0295515 52.966 1 80.3867 0.00370536 80.387 1 M KAMKQYNGVPLDGRPMNIQLVTSQIDAQRRP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX PM(1)NIQLVTSQIDAQR PM(80.39)NIQLVTSQIDAQR 2 3 0.79963 4233000 4233000 0 0 2.0581 0 0 0 0 769530 0 0 3463400 0 NaN NaN NaN NaN NaN 0 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 769530 0 0 0 0 0 0 0 0 3463400 0 0 0 0 0 924 1555 176 176 3464 3950 11118;11119 11683;11684 11119 11684 20190902_JH_WT_Ubi_2 10791 11119 11684 20190902_JH_WT_Ubi_2 10791 11119 11684 20190902_JH_WT_Ubi_2 10791 sp|Q86VI3|IQGA3_HUMAN 1278 sp|Q86VI3|IQGA3_HUMAN sp|Q86VI3|IQGA3_HUMAN sp|Q86VI3|IQGA3_HUMAN Ras GTPase-activating-like protein IQGAP3 OS=Homo sapiens OX=9606 GN=IQGAP3 PE=1 SV=2 1 71.0308 0.00821587 71.031 41.707 71.031 1 71.0308 0.00821587 71.031 1 M FAVDEYSDMVAVAKPMVYITVGELVNTHRLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX PM(1)VYITVGELVNTHR PM(71.03)VYITVGELVNTHR 2 3 2.8298 946230 946230 0 0 NaN 946230 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 946230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 925 1556 1278 1278 3470 3958 11139 11705 11139 11705 20190821_JH_EV_Ubi 9925 11139 11705 20190821_JH_EV_Ubi 9925 11139 11705 20190821_JH_EV_Ubi 9925 sp|Q86Y01|DTX1_HUMAN 10 sp|Q86Y01|DTX1_HUMAN sp|Q86Y01|DTX1_HUMAN sp|Q86Y01|DTX1_HUMAN E3 ubiquitin-protein ligase DTX1 OS=Homo sapiens OX=9606 GN=DTX1 PE=1 SV=1 1 64.2595 0.0205408 64.26 21.552 64.26 1 64.2595 0.0205408 64.26 1 M ______MSRPGHGGLMPVNGLGFPPQNVARV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX SRPGHGGLM(1)PVNGLGFPPQNVAR SRPGHGGLM(64.26)PVNGLGFPPQNVAR 9 3 -4.3995 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 926 1565 10 10 4137 4702 13118 13756 13118 13756 20190902_JH_WT_Ubi_3 6602 13118 13756 20190902_JH_WT_Ubi_3 6602 13118 13756 20190902_JH_WT_Ubi_3 6602 sp|Q86YT6|MIB1_HUMAN 740 sp|Q86YT6|MIB1_HUMAN sp|Q86YT6|MIB1_HUMAN sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens OX=9606 GN=MIB1 PE=1 SV=1 1 66.3077 6.37584E-06 95.822 60.924 66.308 1 92.2902 6.37584E-06 92.29 1 66.3077 0.00241412 66.308 1 95.8224 0.00108728 95.822 1 M GKVDAAWEPSKNTLIMGLGTQGAEKKSAASI X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPXXXXX VDAAWEPSKNTLIM(1)GLGTQGAEK VDAAWEPSKNTLIM(66.31)GLGTQGAEK 14 3 1.0543 11505000 11505000 0 0 6.0399 0 1652500 0 0 0 3562700 3241300 0 0 NaN 0.86753 NaN NaN NaN NaN NaN NaN NaN 0 0 0 1652500 0 0 0 0 0 0 0 0 0 0 0 3562700 0 0 3241300 0 0 0 0 0 0 0 0 927 1570 740 740 3227;4728 3687;5364 10379;10380;10381;15164;15165 10922;10923;10924;15932;15933 15165 15933 20190902_JH_MUT_Ubi_2 10796 10381 10924 20190902_JH_MUT_Ubi_3 6191 15164 15932 20190821_JH_MUT_Ubi 9396 sp|Q8IV08|PLD3_HUMAN 6 sp|Q8IV08|PLD3_HUMAN sp|Q8IV08|PLD3_HUMAN sp|Q8IV08|PLD3_HUMAN Phospholipase D3 OS=Homo sapiens OX=9606 GN=PLD3 PE=1 SV=1 1 67.0097 4.25655E-05 81.974 55.185 67.01 1 62.032 0.000937603 62.032 1 81.9736 4.25655E-05 81.974 1 67.0097 0.000492344 67.01 2 M __________MKPKLMYQELKVPAEEPANEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP LM(1)YQELKVPAEEPANELPM(1)NEIEAWK LM(67.01)YQELKVPAEEPANELPM(67.01)NEIEAWK 2 3 -0.36431 11698000 0 11698000 0 NaN 0 0 5495100 1202200 0 0 0 5000800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 5495100 0 0 1202200 0 0 0 0 0 0 0 0 0 0 0 5000800 0 0 0 0 928 1571 6 6 2723 3096 8830;8831;8832 9287;9288;9289;9290 8832 9290 20190902_JH_WT_Ubi_2 12982 8830 9287 20190902_JH_EV_Ubi_2 10873 8830 9287 20190902_JH_EV_Ubi_2 10873 sp|Q8IV08|PLD3_HUMAN 23 sp|Q8IV08|PLD3_HUMAN sp|Q8IV08|PLD3_HUMAN sp|Q8IV08|PLD3_HUMAN Phospholipase D3 OS=Homo sapiens OX=9606 GN=PLD3 PE=1 SV=1 1 67.0097 4.25655E-05 81.974 55.185 67.01 1 62.032 0.000937603 62.032 1 81.9736 4.25655E-05 81.974 1 67.0097 0.000492344 67.01 2 M QELKVPAEEPANELPMNEIEAWKAAEKKARW X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX LM(1)YQELKVPAEEPANELPM(1)NEIEAWK LM(67.01)YQELKVPAEEPANELPM(67.01)NEIEAWK 19 3 -0.36431 11698000 0 11698000 0 NaN 0 0 5495100 1202200 0 0 0 5000800 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 5495100 0 0 1202200 0 0 0 0 0 0 0 0 0 0 0 5000800 0 0 0 0 929 1571 23 23 2723 3096 8830;8831;8832 9287;9288;9289;9290 8832 9290 20190902_JH_WT_Ubi_2 12982 8830 9287 20190902_JH_EV_Ubi_2 10873 8830 9287 20190902_JH_EV_Ubi_2 10873 sp|Q8IVF2|AHNK2_HUMAN;sp|Q8IVF2-3|AHNK2_HUMAN 2522;2422 sp|Q8IVF2|AHNK2_HUMAN sp|Q8IVF2|AHNK2_HUMAN sp|Q8IVF2|AHNK2_HUMAN Protein AHNAK2 OS=Homo sapiens OX=9606 GN=AHNAK2 PE=1 SV=2;sp|Q8IVF2-3|AHNK2_HUMAN Isoform 3 of Protein AHNAK2 OS=Homo sapiens OX=9606 GN=AHNAK2 1 61.2126 0.0176522 61.213 20.104 61.213 1 61.2126 0.0176522 61.213 M DVSAPKVEADGSLSSMQGDLKATDLSIQPPS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPXXXXXXXXXX VEADGSLSSM(1)QGDLK VEADGSLSSM(61.21)QGDLK 10 2 -3.8915 3221500 3221500 0 0 NaN 0 0 3221500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3221500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 930 1573 2522 2522 4766 5409 15286 16057 15286 16057 20190821_JH_WT_Ubi 8972 15286 16057 20190821_JH_WT_Ubi 8972 15286 16057 20190821_JH_WT_Ubi 8972 sp|Q8IVM0|CCD50_HUMAN;sp|Q8IVM0-2|CCD50_HUMAN 194;370 sp|Q8IVM0|CCD50_HUMAN sp|Q8IVM0|CCD50_HUMAN sp|Q8IVM0|CCD50_HUMAN Coiled-coil domain-containing protein 50 OS=Homo sapiens OX=9606 GN=CCDC50 PE=1 SV=1;sp|Q8IVM0-2|CCD50_HUMAN Isoform 2 of Coiled-coil domain-containing protein 50 OS=Homo sapiens OX=9606 GN=CCDC50 1 88.2818 1.07137E-05 125.47 83.643 88.282 1 58.7233 0.0193147 58.723 1 125.468 1.07137E-05 125.47 1 88.2818 0.00175616 88.282 1 M ARKLQEEELLATQVDMRAAQVAQDEEIARLL X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPXXXXXXXXXXXXXX KLQEEELLATQVDM(1)R KLQEEELLATQVDM(88.28)R 14 3 1.9617 7395200 7395200 0 0 NaN 0 1806200 0 0 0 2429400 3159600 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1806200 0 0 0 0 0 0 0 0 0 0 0 2429400 0 0 3159600 0 0 0 0 0 0 0 0 931 1575 194 194 2391 2719 7840;7841;7842 8243;8244;8245 7842 8245 20190902_JH_MUT_Ubi_3 7903 7841 8244 20190902_JH_MUT_Ubi_2 8382 7841 8244 20190902_JH_MUT_Ubi_2 8382 sp|Q8IW50-3|F219A_HUMAN;sp|Q8IW50-7|F219A_HUMAN;sp|Q8IW50-2|F219A_HUMAN;sp|Q8IW50-5|F219A_HUMAN;sp|Q8IW50-6|F219A_HUMAN;sp|Q8IW50-4|F219A_HUMAN;sp|Q8IW50|F219A_HUMAN 42;70;42;53;53;59;70 sp|Q8IW50-3|F219A_HUMAN sp|Q8IW50-3|F219A_HUMAN sp|Q8IW50-3|F219A_HUMAN Isoform 3 of Protein FAM219A OS=Homo sapiens OX=9606 GN=FAM219A;sp|Q8IW50-7|F219A_HUMAN Isoform 7 of Protein FAM219A OS=Homo sapiens OX=9606 GN=FAM219A;sp|Q8IW50-2|F219A_HUMAN Isoform 2 of Protein FAM219A OS=Homo sapiens OX=9606 GN= 1 55.0637 0.0296792 55.064 12.589 55.064 1 55.0637 0.0296792 55.064 1 M KQRELARKGSLKNGSMGSPVNQQPKKNNVMA X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;Deamidation (NQ);X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPXXXXXX NGSM(1)GSPVNQQPK NGSM(55.06)GSPVNQQPK 4 2 -1.0651 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 932 1576 42 42 3076 3520 9939 10470 9939 10470 20190821_JH_WT_Ubi 5636 9939 10470 20190821_JH_WT_Ubi 5636 9939 10470 20190821_JH_WT_Ubi 5636 sp|Q8IWJ2|GCC2_HUMAN 38 sp|Q8IWJ2|GCC2_HUMAN sp|Q8IWJ2|GCC2_HUMAN sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens OX=9606 GN=GCC2 PE=1 SV=4 0.999778 36.6043 0.0027858 104.17 35.274 104.17 0.999778 36.6043 0.0027858 104.17 M ETLPKEDLIKFAKKQMMLIQKAKSRCTELEK X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX QM(1)MLIQKAKSR QM(36.6)M(-36.6)LIQKAKSR 2 2 0.083572 1812200 1812200 0 0 NaN 0 0 0 0 0 0 0 1812200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1812200 0 0 0 0 0 933 1578 38 38 3674 4184 11732 12312 11732 12312 20190902_JH_WT_Ubi_2 14992 11732 12312 20190902_JH_WT_Ubi_2 14992 11732 12312 20190902_JH_WT_Ubi_2 14992 sp|Q8IXS8|F126B_HUMAN 425 sp|Q8IXS8|F126B_HUMAN sp|Q8IXS8|F126B_HUMAN sp|Q8IXS8|F126B_HUMAN Protein FAM126B OS=Homo sapiens OX=9606 GN=FAM126B PE=1 SV=1 1 68.5672 0.00668035 68.567 19.926 68.567 1 68.5672 0.00668035 68.567 1 M QQPTDLSVDSVELTPMKKHLSLPAGQVVPKI Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX KQYVQQPTDLSVDSVELTPM(1)KK KQYVQQPTDLSVDSVELTPM(68.57)KK 20 3 1.1928 1113500 1113500 0 0 NaN 0 0 1113500 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1113500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 934 1582 425 425 2453 2788 8015 8426 8015 8426 20190821_JH_WT_Ubi 15946 8015 8426 20190821_JH_WT_Ubi 15946 8015 8426 20190821_JH_WT_Ubi 15946 sp|Q8IYA8-3|IHO1_HUMAN;sp|Q8IYA8|IHO1_HUMAN 11;11 sp|Q8IYA8-3|IHO1_HUMAN sp|Q8IYA8-3|IHO1_HUMAN sp|Q8IYA8-3|IHO1_HUMAN Isoform 3 of Interactor of HORMAD1 protein 1 OS=Homo sapiens OX=9606 GN=CCDC36;sp|Q8IYA8|IHO1_HUMAN Interactor of HORMAD1 protein 1 OS=Homo sapiens OX=9606 GN=CCDC36 PE=1 SV=2 1 54.6997 0.031784 54.7 12.699 54.7 1 54.6997 0.031784 54.7 1 M _____MNFNVWNIKEMLSIPSGSGNKKSSNW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPXXXX EM(1)LSIPSGSGNKK EM(54.7)LSIPSGSGNKK 2 3 1.9973 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 935 1588 11 11 1037 1167 3287 3455 3287 3455 20190902_JH_WT_Ubi_2 5894 3287 3455 20190902_JH_WT_Ubi_2 5894 3287 3455 20190902_JH_WT_Ubi_2 5894 sp|Q8IYU4|UBQLN_HUMAN 175 sp|Q8IYU4|UBQLN_HUMAN sp|Q8IYU4|UBQLN_HUMAN sp|Q8IYU4|UBQLN_HUMAN Ubiquilin-like protein OS=Homo sapiens OX=9606 GN=UBQLNL PE=2 SV=3 1 51.5025 0.0322309 51.503 12.628 51.503 1 51.5025 0.0322309 51.503 1 M HTQNLEVSHPECKAQMLENPSIQRLLSNMEF X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX VHTQNLEVSHPECKAQM(1)LENPSIQR VHTQNLEVSHPECKAQM(51.5)LENPSIQR 17 3 0.5453 2364400 2364400 0 0 NaN 0 2364400 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2364400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 936 1592 175 175 4851 5505 15553 16336 15553 16336 20190821_JH_MUT_Ubi 13686 15553 16336 20190821_JH_MUT_Ubi 13686 15553 16336 20190821_JH_MUT_Ubi 13686 sp|Q8IYY4-2|DZI1L_HUMAN;sp|Q8IYY4|DZI1L_HUMAN 301;301 sp|Q8IYY4-2|DZI1L_HUMAN sp|Q8IYY4-2|DZI1L_HUMAN sp|Q8IYY4-2|DZI1L_HUMAN Isoform 2 of Zinc finger protein DZIP1L OS=Homo sapiens OX=9606 GN=DZIP1L;sp|Q8IYY4|DZI1L_HUMAN Zinc finger protein DZIP1L OS=Homo sapiens OX=9606 GN=DZIP1L PE=1 SV=2 1 54.9816 0.0320385 54.982 8.5197 54.982 1 54.9816 0.0320385 54.982 M STLEEKLRALQSHSVMESKLGSLRDEESEEW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX ALQSHSVM(1)ESK ALQSHSVM(54.98)ESK 8 2 -2.3614 1423500 1423500 0 0 NaN 0 0 0 0 0 0 0 1423500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1423500 0 0 0 0 0 937 1594 301 301 216 245 714 783 714 783 20190902_JH_WT_Ubi_2 6835 714 783 20190902_JH_WT_Ubi_2 6835 714 783 20190902_JH_WT_Ubi_2 6835 sp|Q8IZ07|AN13A_HUMAN 558 sp|Q8IZ07|AN13A_HUMAN sp|Q8IZ07|AN13A_HUMAN sp|Q8IZ07|AN13A_HUMAN Ankyrin repeat domain-containing protein 13A OS=Homo sapiens OX=9606 GN=ANKRD13A PE=1 SV=3 1 54.4573 0.0126153 54.834 19.661 54.457 1 54.8342 0.0126153 54.834 1 54.4573 0.0130086 54.457 1 M ALSETSRFDNDLQLAMELSAKELEEWELRLQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPXX FDNDLQLAM(1)ELSAKELEEWELR FDNDLQLAM(54.46)ELSAKELEEWELR 9 3 -0.37381 7817700 7817700 0 0 NaN 0 0 2788300 0 0 0 0 5029400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2788300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5029400 0 0 0 0 0 938 1595 558 558 1180 1332 3752;3753 3948;3949 3753 3949 20190902_JH_WT_Ubi_2 15885 3752 3948 20190821_JH_WT_Ubi 15010 3752 3948 20190821_JH_WT_Ubi 15010 sp|Q8IZY2-2|ABCA7_HUMAN;sp|Q8IZY2|ABCA7_HUMAN 916;1054 sp|Q8IZY2-2|ABCA7_HUMAN sp|Q8IZY2-2|ABCA7_HUMAN sp|Q8IZY2-2|ABCA7_HUMAN Isoform 2 of ATP-binding cassette sub-family A member 7 OS=Homo sapiens OX=9606 GN=ABCA7;sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens OX=9606 GN=ABCA7 PE=1 SV=3 1 49.066 4.89927E-05 100.39 61.565 49.066 1 100.389 4.89927E-05 100.39 1 49.066 0.0281515 49.066 1 M KARLPLTTNEKADTDMEGSVDTRQEKKNGSQ X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX LPLTTNEKADTDM(1)EGSVDTR LPLTTNEKADTDM(49.07)EGSVDTR 13 3 1.0872 1578600 1578600 0 0 NaN 0 0 0 0 0 604990 973620 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 604990 0 0 973620 0 0 0 0 0 0 0 0 939 1601 916 916 2755 3129 8918;8919 9381;9382 8919 9382 20190902_JH_MUT_Ubi_3 6185 8918 9381 20190902_JH_MUT_Ubi_2 6481 8918 9381 20190902_JH_MUT_Ubi_2 6481 sp|Q8IZY5|BLID_HUMAN 77 sp|Q8IZY5|BLID_HUMAN sp|Q8IZY5|BLID_HUMAN sp|Q8IZY5|BLID_HUMAN BH3-like motif-containing cell death inducer OS=Homo sapiens OX=9606 GN=BLID PE=1 SV=2 1 67.1694 0.027198 67.169 11.159 67.169 1 67.1694 0.027198 67.169 M ETVLSLKRYNLGSSAMKRNVPGHVLQRPSYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPXXXXXXXXXXXXXX YNLGSSAM(1)K YNLGSSAM(67.17)K 8 2 -1.0433 144660000 144660000 0 0 NaN 0 0 0 0 0 0 0 144660000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144660000 0 0 0 0 0 940 1602 77 77 5183 5899 16726 17583 16726 17583 20190902_JH_WT_Ubi_2 5018 16726 17583 20190902_JH_WT_Ubi_2 5018 16726 17583 20190902_JH_WT_Ubi_2 5018 sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN 371;371;615 sp|Q8N3V7-3|SYNPO_HUMAN sp|Q8N3V7-3|SYNPO_HUMAN sp|Q8N3V7-3|SYNPO_HUMAN Isoform 3 of Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO;sp|Q8N3V7-2|SYNPO_HUMAN Isoform 2 of Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO;sp|Q8N3V7|SYNPO_HUMAN Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO PE=1 SV=2 1 83.7581 0.000370637 94.203 63.309 83.758 1 93.7377 0.000387202 93.738 1 94.2034 0.000370637 94.203 1 83.7581 0.00109292 83.758 1 M GQAVPASKTGILEESMARRGSRKSMFTFVEK X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX GQAVPASKTGILEESM(1)AR GQAVPASKTGILEESM(83.76)AR 16 3 -0.50095 11822000 11822000 0 0 NaN 0 2342500 0 0 0 6162200 3317400 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2342500 0 0 0 0 0 0 0 0 0 0 0 6162200 0 0 3317400 0 0 0 0 0 0 0 0 941 1614 371 371 1661 1891 5304;5305;5306 5585;5586;5587 5306 5587 20190902_JH_MUT_Ubi_3 6458 5305 5586 20190902_JH_MUT_Ubi_2 6805 5305 5586 20190902_JH_MUT_Ubi_2 6805 sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN 491;491;735 sp|Q8N3V7-3|SYNPO_HUMAN sp|Q8N3V7-3|SYNPO_HUMAN sp|Q8N3V7-3|SYNPO_HUMAN Isoform 3 of Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO;sp|Q8N3V7-2|SYNPO_HUMAN Isoform 2 of Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO;sp|Q8N3V7|SYNPO_HUMAN Synaptopodin OS=Homo sapiens OX=9606 GN=SYNPO PE=1 SV=2 1 77.0274 1.38594E-19 168.68 128.67 77.027 1 51.7707 0.00506111 73.252 1 62.5249 0.0138259 62.525 1 67.2988 0.00957108 67.299 1 168.679 1.38594E-19 168.68 1 95.0734 0.000689352 95.073 1 77.0274 0.00319316 77.027 1 M ASGKGAELYARRQSRMEKYVIESSSHTPELA X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EKYVIESSSHTPELAR M(77.03)EKYVIESSSHTPELAR 1 3 -0.94763 17460000 17460000 0 0 NaN 1862500 1307900 0 0 1888700 4325900 1804900 0 2859900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1862500 0 0 1307900 0 0 0 0 0 0 0 0 1888700 0 0 4325900 0 0 1804900 0 0 0 0 0 2859900 0 0 942 1614 491 491 2902 3296 9357;9358;9359;9360;9361;9362;9363 9850;9851;9852;9853;9854;9855;9856 9363 9856 20190902_JH_WT_Ubi_3 6995 9361 9854 20190902_JH_MUT_Ubi_2 6156 9361 9854 20190902_JH_MUT_Ubi_2 6156 sp|Q8N4Q0|PTGR3_HUMAN 33 sp|Q8N4Q0|PTGR3_HUMAN sp|Q8N4Q0|PTGR3_HUMAN sp|Q8N4Q0|PTGR3_HUMAN Prostaglandin reductase 3 OS=Homo sapiens OX=9606 GN=ZADH2 PE=1 SV=1 1 56.5397 0.0112955 56.54 17.716 56.54 1 43.3699 0.0372659 43.37 1 50.4245 0.019233 50.425 1 47.0473 0.0278659 47.047 1 56.5397 0.0112955 56.54 1 M ARHFLDFQGSAIPQAMQKLVVTRLSPNFREA X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);Deamidation (NQ);GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPXXXXXXXX HFLDFQGSAIPQAM(1)QKLVVTR HFLDFQGSAIPQAM(56.54)QKLVVTR 14 3 -1.4011 53685000 53685000 0 0 NaN 0 7886900 0 0 0 11410000 0 15888000 18500000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 7886900 0 0 0 0 0 0 0 0 0 0 0 11410000 0 0 0 0 0 15888000 0 0 18500000 0 0 943 1617 33 33 1830 2078 5838;5839;5840;5841 6148;6149;6150;6151 5841 6151 20190902_JH_WT_Ubi_3 15504 5841 6151 20190902_JH_WT_Ubi_3 15504 5841 6151 20190902_JH_WT_Ubi_3 15504 sp|Q8N4Q0|PTGR3_HUMAN;sp|Q8N4Q0-2|PTGR3_HUMAN 190;67 sp|Q8N4Q0|PTGR3_HUMAN sp|Q8N4Q0|PTGR3_HUMAN sp|Q8N4Q0|PTGR3_HUMAN Prostaglandin reductase 3 OS=Homo sapiens OX=9606 GN=ZADH2 PE=1 SV=1;sp|Q8N4Q0-2|PTGR3_HUMAN Isoform 2 of Prostaglandin reductase 3 OS=Homo sapiens OX=9606 GN=ZADH2 1 45.2206 0.0267998 45.221 7.0016 45.221 1 45.2206 0.0267998 45.221 1 M KVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX KVLVTAAAGGTGQFAM(1)QLSK KVLVTAAAGGTGQFAM(45.22)QLSK 16 3 -2.2182 15934000 15934000 0 0 NaN 0 0 0 0 15934000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 15934000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 944 1617 190 190 2480 2816 8081 8494 8081 8494 20190902_JH_EV_Ubi_3 10921 8081 8494 20190902_JH_EV_Ubi_3 10921 8081 8494 20190902_JH_EV_Ubi_3 10921 sp|Q8N4S9-2|MALD2_HUMAN;sp|Q8N4S9|MALD2_HUMAN 378;378 sp|Q8N4S9-2|MALD2_HUMAN sp|Q8N4S9-2|MALD2_HUMAN sp|Q8N4S9-2|MALD2_HUMAN Isoform 2 of MARVEL domain-containing protein 2 OS=Homo sapiens OX=9606 GN=MARVELD2;sp|Q8N4S9|MALD2_HUMAN MARVEL domain-containing protein 2 OS=Homo sapiens OX=9606 GN=MARVELD2 PE=1 SV=2 1 85.0065 6.8188E-05 109.1 73.631 85.006 1 87.3628 0.000832563 87.363 1 109.104 6.8188E-05 109.1 1 89.1361 0.000749449 89.136 1 85.0065 0.00113269 85.006 1 M LKLWRHEAARRHREYMEQQEINEPSLSSKRK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX EYM(1)EQQEINEPSLSSKR EYM(85.01)EQQEINEPSLSSKR 3 3 1.3051 10484000 10484000 0 0 NaN 3470600 0 0 2384500 0 3205700 1423100 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 3470600 0 0 0 0 0 0 0 0 2384500 0 0 0 0 0 3205700 0 0 1423100 0 0 0 0 0 0 0 0 945 1618 378 378 1162 1311 3697;3698;3699;3700 3891;3892;3893;3894 3700 3894 20190902_JH_MUT_Ubi_3 6041 3698 3892 20190902_JH_EV_Ubi_2 6045 3698 3892 20190902_JH_EV_Ubi_2 6045 sp|Q8N766-3|EMC1_HUMAN;sp|Q8N766-2|EMC1_HUMAN;sp|Q8N766|EMC1_HUMAN 90;90;90 sp|Q8N766-3|EMC1_HUMAN sp|Q8N766-3|EMC1_HUMAN sp|Q8N766-3|EMC1_HUMAN Isoform 3 of ER membrane protein complex subunit 1 OS=Homo sapiens OX=9606 GN=EMC1;sp|Q8N766-2|EMC1_HUMAN Isoform 2 of ER membrane protein complex subunit 1 OS=Homo sapiens OX=9606 GN=EMC1;sp|Q8N766|EMC1_HUMAN ER membrane protein com 1 57.1885 0.00923323 57.188 26.77 57.188 1 57.1885 0.00923323 57.188 1 M WRHVDKGTAEGAVDAMLLHGQDVITVSNGGR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP GTAEGAVDAM(1)LLHGQDVITVSNGGR GTAEGAVDAM(57.19)LLHGQDVITVSNGGR 10 3 2.8092 839380 839380 0 0 NaN 0 839380 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 839380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 946 1623 90 90 1709 1948 5462 5749 5462 5749 20190821_JH_MUT_Ubi 9329 5462 5749 20190821_JH_MUT_Ubi 9329 5462 5749 20190821_JH_MUT_Ubi 9329 sp|Q8N9V6|ANR53_HUMAN 282 sp|Q8N9V6|ANR53_HUMAN sp|Q8N9V6|ANR53_HUMAN sp|Q8N9V6|ANR53_HUMAN Ankyrin repeat domain-containing protein 53 OS=Homo sapiens OX=9606 GN=ANKRD53 PE=1 SV=3 0.868684 10.6021 0.0322549 43.383 17.56 43.383 0.868684 10.6021 0.0322549 43.383 1 M MWKKDKKDFAREMTKMKMFKSQLTLMEHNYL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);X;X;GlyGly (K);X;Deamidation (NQ);X;X;X;X;X;X;Deamidation (NQ);X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(0.869)KM(0.078)FKSQLTLM(0.053)EHNYLIEYQK M(10.6)KM(-10.6)FKSQLTLM(-12.3)EHNYLIEYQK 1 3 -1.9957 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 947 1626 282 282 2929 3326 9425 9920 9425 9920 20190902_JH_EV_Ubi_2 9200 9425 9920 20190902_JH_EV_Ubi_2 9200 9425 9920 20190902_JH_EV_Ubi_2 9200 sp|Q8NBN3-3|TM87A_HUMAN;sp|Q8NBN3|TM87A_HUMAN 426;487 sp|Q8NBN3-3|TM87A_HUMAN sp|Q8NBN3-3|TM87A_HUMAN sp|Q8NBN3-3|TM87A_HUMAN Isoform 3 of Transmembrane protein 87A OS=Homo sapiens OX=9606 GN=TMEM87A;sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens OX=9606 GN=TMEM87A PE=1 SV=3 1 45.3049 2.14041E-07 110.26 92.839 45.305 1 81.6061 0.000334129 81.606 1 85.0461 0.000144465 85.046 1 60.0927 0.00846072 60.093 1 71.2626 0.00197072 71.263 1 85.3625 0.000127024 85.362 1 45.3049 1.28461E-05 93.152 1 110.26 2.14041E-07 110.26 1 68.8199 0.00275505 68.82 1 83.4044 0.000234983 83.404 1;2 M SPLSEEEEEDEQKEPMLKESFEGMKMRSTKQ X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX FAFSPLSEEEEEDEQKEPM(1)LKESFEGM(1)K FAFSPLSEEEEEDEQKEPM(45.3)LKESFEGM(45.3)K 19 4 1.2808 53430000 49894000 3535700 0 5.9678 8010600 3956700 4302100 3983900 8395800 12062000 4692500 4216000 3810400 NaN 0.85034 NaN NaN NaN NaN 1.0913 NaN NaN 8010600 0 0 3956700 0 0 4302100 0 0 3983900 0 0 8395800 0 0 8526300 3535700 0 4692500 0 0 4216000 0 0 3810400 0 0 948 1631 426 426 1165;1166 1314;1316 3703;3704;3705;3706;3707;3708;3709;3710;3711;3714 3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3910 3714 3910 20190902_JH_MUT_Ubi_2 10474 3708 3902 20190902_JH_MUT_Ubi_3 9625 3708 3902 20190902_JH_MUT_Ubi_3 9625 sp|Q8NBN3-3|TM87A_HUMAN;sp|Q8NBN3|TM87A_HUMAN 434;495 sp|Q8NBN3-3|TM87A_HUMAN sp|Q8NBN3-3|TM87A_HUMAN sp|Q8NBN3-3|TM87A_HUMAN Isoform 3 of Transmembrane protein 87A OS=Homo sapiens OX=9606 GN=TMEM87A;sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens OX=9606 GN=TMEM87A PE=1 SV=3 1 45.3049 0.00623108 45.305 30.931 45.305 1 45.3049 0.00623108 45.305 2 M EDEQKEPMLKESFEGMKMRSTKQEPNGNSKV X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX FAFSPLSEEEEEDEQKEPM(1)LKESFEGM(1)K FAFSPLSEEEEEDEQKEPM(45.3)LKESFEGM(45.3)K 27 4 1.2808 3535700 0 3535700 0 NaN 0 0 0 0 0 3535700 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3535700 0 0 0 0 0 0 0 0 0 0 949 1631 434 434 1166 1316 3714 3910 3714 3910 20190902_JH_MUT_Ubi_2 10474 3714 3910 20190902_JH_MUT_Ubi_2 10474 3714 3910 20190902_JH_MUT_Ubi_2 10474 sp|Q8NBS3-3|S4A11_HUMAN 20 sp|Q8NBS3-3|S4A11_HUMAN sp|Q8NBS3-3|S4A11_HUMAN sp|Q8NBS3-3|S4A11_HUMAN Isoform 3 of Sodium bicarbonate transporter-like protein 11 OS=Homo sapiens OX=9606 GN=SLC4A11 1 50.88 0.000339046 50.88 12.795 50.88 1 50.88 0.000339046 50.88 1 M TRRVFHLQPCENSPTMSQNGYFEDSSYYKCD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP VFHLQPCENSPTM(1)SQNGYFEDSSYYKCDTDDTFEAR VFHLQPCENSPTM(50.88)SQNGYFEDSSYYKCDTDDTFEAR 13 4 0.77731 2431000 2431000 0 0 NaN 0 0 0 0 0 2431000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2431000 0 0 0 0 0 0 0 0 0 0 0 950 1635 20 20 4815 5464 15455 16233 15455 16233 20190902_JH_MUT_Ubi_2 10885 15455 16233 20190902_JH_MUT_Ubi_2 10885 15455 16233 20190902_JH_MUT_Ubi_2 10885 sp|Q8NC54|KCT2_HUMAN 254 sp|Q8NC54|KCT2_HUMAN sp|Q8NC54|KCT2_HUMAN sp|Q8NC54|KCT2_HUMAN Keratinocyte-associated transmembrane protein 2 OS=Homo sapiens OX=9606 GN=KCT2 PE=1 SV=2 1 59.7329 0.0107337 59.733 34.512 59.733 1 56.7991 0.0145452 56.799 1 59.7329 0.0107337 59.733 1 M KTVEYHRLDQNVNEAMPSLKITNDYIF____ GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPXXXX LDQNVNEAM(1)PSLKITNDYIF LDQNVNEAM(59.73)PSLKITNDYIF 9 3 0.80623 1940000 1940000 0 0 NaN 0 955090 0 0 0 984900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 955090 0 0 0 0 0 0 0 0 0 0 0 984900 0 0 0 0 0 0 0 0 0 0 0 951 1638 254 254 2535 2879 8236;8237 8658;8659 8237 8659 20190902_JH_MUT_Ubi_2 13713 8237 8659 20190902_JH_MUT_Ubi_2 13713 8237 8659 20190902_JH_MUT_Ubi_2 13713 sp|Q8NDM7-2|CFA43_HUMAN;sp|Q8NDM7|CFA43_HUMAN 1458;1487 sp|Q8NDM7-2|CFA43_HUMAN sp|Q8NDM7-2|CFA43_HUMAN sp|Q8NDM7-2|CFA43_HUMAN Isoform 2 of Cilia- and flagella-associated protein 43 OS=Homo sapiens OX=9606 GN=CFAP43;sp|Q8NDM7|CFA43_HUMAN Cilia- and flagella-associated protein 43 OS=Homo sapiens OX=9606 GN=CFAP43 PE=2 SV=3 0.5 0 0.0252633 63.534 18.199 63.534 0.5 0 0.0252633 63.534 M LNSVIRTQGQKKVASMMESKDVHKRILQIEW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPXXXXXXXXXXX KVASM(0.5)M(0.5)ESK KVASM(0)M(0)ESK 5 2 -4.0651 586800 586800 0 0 NaN 0 0 586800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 586800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 952 1644 1458 1458 2469 2804 8046 8457 8046 8457 20190821_JH_WT_Ubi 3553 8046 8457 20190821_JH_WT_Ubi 3553 8046 8457 20190821_JH_WT_Ubi 3553 sp|Q8NDM7-2|CFA43_HUMAN;sp|Q8NDM7|CFA43_HUMAN 1459;1488 sp|Q8NDM7-2|CFA43_HUMAN sp|Q8NDM7-2|CFA43_HUMAN sp|Q8NDM7-2|CFA43_HUMAN Isoform 2 of Cilia- and flagella-associated protein 43 OS=Homo sapiens OX=9606 GN=CFAP43;sp|Q8NDM7|CFA43_HUMAN Cilia- and flagella-associated protein 43 OS=Homo sapiens OX=9606 GN=CFAP43 PE=2 SV=3 0.5 0 0.0252633 63.534 18.199 63.534 0.5 0 0.0252633 63.534 M NSVIRTQGQKKVASMMESKDVHKRILQIEWE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KVASM(0.5)M(0.5)ESK KVASM(0)M(0)ESK 6 2 -4.0651 586800 586800 0 0 NaN 0 0 586800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 586800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953 1644 1459 1459 2469 2804 8046 8457 8046 8457 20190821_JH_WT_Ubi 3553 8046 8457 20190821_JH_WT_Ubi 3553 8046 8457 20190821_JH_WT_Ubi 3553 sp|Q8NEP3-3|DAAF1_HUMAN;sp|Q8NEP3-2|DAAF1_HUMAN;sp|Q8NEP3|DAAF1_HUMAN 326;74;326 sp|Q8NEP3-3|DAAF1_HUMAN sp|Q8NEP3-3|DAAF1_HUMAN sp|Q8NEP3-3|DAAF1_HUMAN Isoform 3 of Dynein assembly factor 1, axonemal OS=Homo sapiens OX=9606 GN=DNAAF1;sp|Q8NEP3-2|DAAF1_HUMAN Isoform 2 of Dynein assembly factor 1, axonemal OS=Homo sapiens OX=9606 GN=DNAAF1;sp|Q8NEP3|DAAF1_HUMAN Dynein assembly factor 1 55.8063 0.0241973 63.624 11.698 55.806 1 55.8063 0.0362452 55.806 1 63.6242 0.0241973 63.624 1 M SRERKKITDSIEALAMIKQRAEERKRQRESQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPXXXXXXXXXXXXX ITDSIEALAM(1)IK ITDSIEALAM(55.81)IK 10 3 -3.6532 8138500 8138500 0 0 NaN 0 0 3497400 0 0 0 4641200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3497400 0 0 0 0 0 0 0 0 0 0 0 4641200 0 0 0 0 0 0 0 0 954 1649 326 326 2272 2585 7454;7455 7834;7835 7455 7835 20190821_JH_WT_Ubi 4116 7454 7834 20190902_JH_MUT_Ubi_3 4622 7454 7834 20190902_JH_MUT_Ubi_3 4622 sp|Q8NF91-5|SYNE1_HUMAN;sp|Q8NF91-6|SYNE1_HUMAN;sp|Q8NF91-10|SYNE1_HUMAN;sp|Q8NF91-7|SYNE1_HUMAN;sp|Q8NF91-4|SYNE1_HUMAN;sp|Q8NF91|SYNE1_HUMAN 635;635;618;635;642;635 sp|Q8NF91-5|SYNE1_HUMAN sp|Q8NF91-5|SYNE1_HUMAN sp|Q8NF91-5|SYNE1_HUMAN Isoform 5 of Nesprin-1 OS=Homo sapiens OX=9606 GN=SYNE1;sp|Q8NF91-6|SYNE1_HUMAN Isoform 6 of Nesprin-1 OS=Homo sapiens OX=9606 GN=SYNE1;sp|Q8NF91-10|SYNE1_HUMAN Isoform 10 of Nesprin-1 OS=Homo sapiens OX=9606 GN=SYNE1;sp|Q8NF91-7|SY 1 56.6249 0.00662238 56.625 27.279 56.625 1 56.6249 0.00662238 56.625 1 M NTVASLQAWLEDAEKMLNQSENAKKDFFRNL Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX YGNTVASLQAWLEDAEKM(1)LNQSENAKK YGNTVASLQAWLEDAEKM(56.62)LNQSENAKK 18 3 3.0994 611920 611920 0 0 NaN 0 611920 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 611920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 955 1652 635 635 5147 5853 16606 17454 16606 17454 20190821_JH_MUT_Ubi 9005 16606 17454 20190821_JH_MUT_Ubi 9005 16606 17454 20190821_JH_MUT_Ubi 9005 sp|Q8NFJ5|RAI3_HUMAN 275 sp|Q8NFJ5|RAI3_HUMAN sp|Q8NFJ5|RAI3_HUMAN sp|Q8NFJ5|RAI3_HUMAN Retinoic acid-induced protein 3 OS=Homo sapiens OX=9606 GN=GPRC5A PE=1 SV=2 1 40.6142 7.11864E-43 201.4 170.34 40.614 1 140.676 5.83322E-11 140.68 1 128.991 2.04157E-08 128.99 1 40.6142 7.77248E-20 161.24 1 201.403 7.11864E-43 201.4 1 161.944 7.21599E-20 161.94 1 176.078 2.08593E-26 176.08 1 136.391 9.71301E-11 136.39 1 181.513 4.57222E-27 181.51 1 185.024 1.3441E-33 185.02 1 M YVSPEFWLLTKQRNPMDYPVEDAFCKPQLVK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;Deamidation (NQ);X;X;GlyGly (K) XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP NPM(1)DYPVEDAFCKPQLVKK NPM(40.61)DYPVEDAFCKPQLVKK 3 4 -1.2635 155490000 155490000 0 0 6.517 12506000 13998000 19910000 10773000 5636100 15665000 16766000 25479000 33196000 2.8875 2.0467 NaN 7.6604 5.9904 3.6745 2.7584 NaN NaN 12506000 0 0 13998000 0 0 19910000 0 0 10773000 0 0 5636100 0 0 15665000 0 0 16766000 0 0 25479000 0 0 33196000 0 0 956 1655 275 275 3183;3184 3637;3639 10248;10249;10250;10251;10252;10253;10254;10255;10256;10263 10788;10789;10790;10791;10792;10793;10794;10795;10796;10803 10263 10803 20190821_JH_WT_Ubi 7511 10249 10789 20190902_JH_EV_Ubi_2 9291 10249 10789 20190902_JH_EV_Ubi_2 9291 sp|Q8NI36|WDR36_HUMAN 586 sp|Q8NI36|WDR36_HUMAN sp|Q8NI36|WDR36_HUMAN sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens OX=9606 GN=WDR36 PE=1 SV=1 1 49.2649 0.000769778 77.746 48.06 49.265 1 77.7461 0.000769778 77.746 1 57.2884 0.00906011 57.288 1 49.2649 0.0170004 49.265 1 M KILIHSVSLSSSPNIMLLHRDSGILGLALDD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX ILIHSVSLSSSPNIM(1)LLHR ILIHSVSLSSSPNIM(49.26)LLHR 15 4 -0.18447 12819000 12819000 0 0 NaN 0 0 4591000 0 0 0 0 3174500 5053700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 4591000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3174500 0 0 5053700 0 0 957 1660 586 586 2197 2505 7259;7260;7261 7636;7637;7638 7261 7638 20190902_JH_WT_Ubi_3 10706 7259 7636 20190821_JH_WT_Ubi 9171 7259 7636 20190821_JH_WT_Ubi 9171 sp|Q8NI77|KI18A_HUMAN 519 sp|Q8NI77|KI18A_HUMAN sp|Q8NI77|KI18A_HUMAN sp|Q8NI77|KI18A_HUMAN Kinesin-like protein KIF18A OS=Homo sapiens OX=9606 GN=KIF18A PE=1 SV=2 1 62.8609 0.018747 62.861 25.497 62.861 1 62.8609 0.018747 62.861 1 M QFDENTNWLHRVEKEMGLLSQNGHIPKELKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;GlyGly (K);X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP EM(1)GLLSQNGHIPKELKK EM(62.86)GLLSQNGHIPKELKK 2 3 1.0733 841230 841230 0 0 NaN 0 841230 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 841230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 958 1662 519 519 1034 1164 3283 3451 3283 3451 20190821_JH_MUT_Ubi 15017 3283 3451 20190821_JH_MUT_Ubi 15017 3283 3451 20190821_JH_MUT_Ubi 15017 sp|Q8TAA9-2|VANG1_HUMAN;sp|Q8TAA9|VANG1_HUMAN 304;306 sp|Q8TAA9-2|VANG1_HUMAN sp|Q8TAA9-2|VANG1_HUMAN sp|Q8TAA9-2|VANG1_HUMAN Isoform 2 of Vang-like protein 1 OS=Homo sapiens OX=9606 GN=VANGL1;sp|Q8TAA9|VANG1_HUMAN Vang-like protein 1 OS=Homo sapiens OX=9606 GN=VANGL1 PE=1 SV=1 1 92.9317 9.4625E-06 92.932 63.488 92.932 1 41.3104 0.0249974 41.31 1 92.9317 9.4625E-06 92.932 1 M NPNLLTASKFRAAKHMAGLKVYNVDGPSNNA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP HM(1)AGLKVYNVDGPSNNATGQSR HM(92.93)AGLKVYNVDGPSNNATGQSR 2 3 -0.51149 4503100 4503100 0 0 NaN 0 0 0 2963500 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 2963500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 959 1663 304 304 1948 2214 6327;6328 6658;6659 6328 6659 20190902_JH_EV_Ubi_3 5271 6328 6659 20190902_JH_EV_Ubi_3 5271 6328 6659 20190902_JH_EV_Ubi_3 5271 sp|Q8TAK5|GABP2_HUMAN 160 sp|Q8TAK5|GABP2_HUMAN sp|Q8TAK5|GABP2_HUMAN sp|Q8TAK5|GABP2_HUMAN GA-binding protein subunit beta-2 OS=Homo sapiens OX=9606 GN=GABPB2 PE=1 SV=1 1 47.6481 0.0250094 47.648 12.557 47.648 1 47.6481 0.0250094 47.648 1 M LEKNNAEILVILQEAMQNQVNVNPERANPVT X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPXXXXX NNAEILVILQEAM(1)QNQVNVNPER NNAEILVILQEAM(47.65)QNQVNVNPER 13 3 -1.8981 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 960 1665 160 160 3166 3619 10190 10729 10190 10729 20190902_JH_WT_Ubi_3 9538 10190 10729 20190902_JH_WT_Ubi_3 9538 10190 10729 20190902_JH_WT_Ubi_3 9538 sp|Q8TBZ0-2|CC110_HUMAN;sp|Q8TBZ0|CC110_HUMAN 409;446 sp|Q8TBZ0-2|CC110_HUMAN sp|Q8TBZ0-2|CC110_HUMAN sp|Q8TBZ0-2|CC110_HUMAN Isoform 2 of Coiled-coil domain-containing protein 110 OS=Homo sapiens OX=9606 GN=CCDC110;sp|Q8TBZ0|CC110_HUMAN Coiled-coil domain-containing protein 110 OS=Homo sapiens OX=9606 GN=CCDC110 PE=1 SV=1 0.999996 59.0511 0.0152166 68.972 18.166 68.972 0.999996 59.0511 0.0152166 68.972 1 M LQNYLKESVQIQKKVMELESENLNLKSKMKP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX VM(1)ELESENLNLKSKMK VM(59.05)ELESENLNLKSKM(-59.05)K 2 3 -1.6653 13256000 13256000 0 0 NaN 0 0 0 0 0 0 0 13256000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13256000 0 0 0 0 0 961 1671 409 409 4940 5610 15879 16685 15879 16685 20190902_JH_WT_Ubi_2 10895 15879 16685 20190902_JH_WT_Ubi_2 10895 15879 16685 20190902_JH_WT_Ubi_2 10895 sp|Q8TBZ2|MYBPP_HUMAN 572 sp|Q8TBZ2|MYBPP_HUMAN sp|Q8TBZ2|MYBPP_HUMAN sp|Q8TBZ2|MYBPP_HUMAN MYCBP-associated protein OS=Homo sapiens OX=9606 GN=MYCBPAP PE=1 SV=2 1 65.3744 0.017333 65.374 11.032 65.374 1 65.3744 0.017333 65.374 1 M HEAVTVVREVLQELLMGVLTPERTPSPVDAY X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX EVLQELLM(1)GVLTPER EVLQELLM(65.37)GVLTPER 8 3 3.4618 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 962 1672 572 572 1141 1288 3652 3846 3652 3846 20190902_JH_WT_Ubi_2 11448 3652 3846 20190902_JH_WT_Ubi_2 11448 3652 3846 20190902_JH_WT_Ubi_2 11448 sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN;sp|Q8TCT9-4|HM13_HUMAN 66;66;66;66 sp|Q8TCT9-5|HM13_HUMAN sp|Q8TCT9-5|HM13_HUMAN sp|Q8TCT9-5|HM13_HUMAN Isoform 5 of Minor histocompatibility antigen H13 OS=Homo sapiens OX=9606 GN=HM13;sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens OX=9606 GN=HM13 PE=1 SV=1;sp|Q8TCT9-2|HM13_HUMAN Isoform 2 of Minor histocomp 1 173.059 2.87407E-20 173.06 109.74 173.06 1 58.2684 0.0344807 58.268 1 99.8343 0.00173458 99.834 1 173.059 2.87407E-20 173.06 1 M ALRSVRCARGKNASDMPETITSRDAARFPII X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPXXXXXXXX GKNASDM(1)PETITSR GKNASDM(173.06)PETITSR 7 3 0.20826 19359000 19359000 0 0 3.8985 0 0 0 2134400 0 0 0 5335600 11889000 NaN NaN NaN NaN NaN NaN NaN NaN 2.3942 0 0 0 0 0 0 0 0 0 2134400 0 0 0 0 0 0 0 0 0 0 0 5335600 0 0 11889000 0 0 963 1676 66 66 1565 1782 5021;5022;5023 5287;5288;5289 5023 5289 20190902_JH_WT_Ubi_3 4901 5023 5289 20190902_JH_WT_Ubi_3 4901 5023 5289 20190902_JH_WT_Ubi_3 4901 sp|Q8TD10|MIPO1_HUMAN 182 sp|Q8TD10|MIPO1_HUMAN sp|Q8TD10|MIPO1_HUMAN sp|Q8TD10|MIPO1_HUMAN Mirror-image polydactyly gene 1 protein OS=Homo sapiens OX=9606 GN=MIPOL1 PE=1 SV=1 1 64.2645 0.0280541 64.265 14.138 64.265 1 64.2645 0.0280541 64.265 1 M VEEVYFAQKERDEAVMSRLQLAIEERDEAIA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPXXXXXXXXXXXXX ERDEAVM(1)SR ERDEAVM(64.26)SR 7 2 -2.012 523540 523540 0 0 NaN 0 523540 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 523540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 964 1678 182 182 1088 1226 3457 3634 3457 3634 20190821_JH_MUT_Ubi 3518 3457 3634 20190821_JH_MUT_Ubi 3518 3457 3634 20190821_JH_MUT_Ubi 3518 sp|Q8TE23|TS1R2_HUMAN 249 sp|Q8TE23|TS1R2_HUMAN sp|Q8TE23|TS1R2_HUMAN sp|Q8TE23|TS1R2_HUMAN Taste receptor type 1 member 2 OS=Homo sapiens OX=9606 GN=TAS1R2 PE=3 SV=2 1 48.3893 0.00672717 48.389 14.177 48.389 1 48.3893 0.00672717 48.389 1 M IAFQETLPTLQPNQNMTSEERQRLVTIVDKL X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX RDICIAFQETLPTLQPNQNM(1)TSEERQR RDICIAFQETLPTLQPNQNM(48.39)TSEERQR 20 3 2.0476 568230 568230 0 0 NaN 0 0 0 0 568230 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 568230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 965 1683 249 249 3729 4243 11839 12421 11839 12421 20190902_JH_EV_Ubi_3 12868 11839 12421 20190902_JH_EV_Ubi_3 12868 11839 12421 20190902_JH_EV_Ubi_3 12868 sp|Q8TER5-4|ARH40_HUMAN;sp|Q8TER5-3|ARH40_HUMAN;sp|Q8TER5|ARH40_HUMAN 193;193;193 sp|Q8TER5-4|ARH40_HUMAN sp|Q8TER5-4|ARH40_HUMAN sp|Q8TER5-4|ARH40_HUMAN Isoform 4 of Rho guanine nucleotide exchange factor 40 OS=Homo sapiens OX=9606 GN=ARHGEF40;sp|Q8TER5-3|ARH40_HUMAN Isoform 3 of Rho guanine nucleotide exchange factor 40 OS=Homo sapiens OX=9606 GN=ARHGEF40;sp|Q8TER5|ARH40_HUMAN Rho 1 44.2154 0.000941578 44.215 30.267 44.215 1 44.2154 0.000941578 44.215 1 M WAELICPRFVHKEGLMVGHQPSTLPPELPSG X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPP FVHKEGLM(1)VGHQPSTLPPELPSGPPGLPSPPLPEEALGTR FVHKEGLM(44.22)VGHQPSTLPPELPSGPPGLPSPPLPEEALGTR 8 5 -0.4924 1822100 1822100 0 0 NaN 0 0 0 0 0 0 0 0 1822100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1822100 0 0 966 1686 193 193 1324 1500 4176 4388 4176 4388 20190902_JH_WT_Ubi_3 12418 4176 4388 20190902_JH_WT_Ubi_3 12418 4176 4388 20190902_JH_WT_Ubi_3 12418 sp|Q8WTV0-3|SCRB1_HUMAN;sp|Q8WTV0-4|SCRB1_HUMAN;sp|Q8WTV0-2|SCRB1_HUMAN 395;460;495 sp|Q8WTV0-3|SCRB1_HUMAN sp|Q8WTV0-3|SCRB1_HUMAN sp|Q8WTV0-3|SCRB1_HUMAN Isoform 2 of Scavenger receptor class B member 1 OS=Homo sapiens OX=9606 GN=SCARB1;sp|Q8WTV0-4|SCRB1_HUMAN Isoform 4 of Scavenger receptor class B member 1 OS=Homo sapiens OX=9606 GN=SCARB1;sp|Q8WTV0-2|SCRB1_HUMAN Isoform 1 of Scave 1 157.834 2.21466E-15 157.83 103.44 157.83 1 149.193 1.74518E-14 149.19 1 157.834 2.21466E-15 157.83 1 M GSKDKEAIQAYSESLMTSAPKGSVLQEAKL_ X;X;GlyGly (K);X;GlyGly (K);X;X;X;Deamidation (NQ);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPXXXXXXXXXX DKEAIQAYSESLM(1)TSAPK DKEAIQAYSESLM(157.83)TSAPK 13 3 0.83437 14903000 14903000 0 0 2.0094 0 0 0 0 0 0 0 8416300 6486800 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8416300 0 0 6486800 0 0 967 1690 395 395 553 637 1766;1767 1872;1873;1874 1767 1874 20190902_JH_WT_Ubi_3 9337 1767 1874 20190902_JH_WT_Ubi_3 9337 1767 1874 20190902_JH_WT_Ubi_3 9337 sp|Q8WUM4|PDC6I_HUMAN;sp|Q8WUM4-2|PDC6I_HUMAN 639;644 sp|Q8WUM4|PDC6I_HUMAN sp|Q8WUM4|PDC6I_HUMAN sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens OX=9606 GN=PDCD6IP PE=1 SV=1;sp|Q8WUM4-2|PDC6I_HUMAN Isoform 2 of Programmed cell death 6-interacting protein OS=Homo sapiens OX=9606 GN=PDCD6IP 1 75.1019 0.0138679 75.102 32.546 75.102 1 75.1019 0.0138679 75.102 1 M GLLKNIQVSHQEFSKMKQSNNEANLREEVLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPXXXXXXXXXXXXXX NIQVSHQEFSKM(1)K NIQVSHQEFSKM(75.1)K 12 3 -1.8758 3688200 3688200 0 0 NaN 0 0 0 0 0 0 3688200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3688200 0 0 0 0 0 0 0 0 968 1692 639 639 3103 3550 10014 10548 10014 10548 20190902_JH_MUT_Ubi_3 4262 10014 10548 20190902_JH_MUT_Ubi_3 4262 10014 10548 20190902_JH_MUT_Ubi_3 4262 sp|Q8WUM9|S20A1_HUMAN 445 sp|Q8WUM9|S20A1_HUMAN sp|Q8WUM9|S20A1_HUMAN sp|Q8WUM9|S20A1_HUMAN Sodium-dependent phosphate transporter 1 OS=Homo sapiens OX=9606 GN=SLC20A1 PE=1 SV=1 1 91.7115 9.76879E-06 129.17 71.735 91.712 1 94.781 0.00172591 94.781 1 108.661 0.000364955 108.66 1 129.169 9.76879E-06 129.17 1 92.2652 0.00205241 92.265 1 91.7115 0.00212426 91.712 1 M LDSFRAKEGEQKGEEMEKLTWPNADSKKRIR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPXXXX GEEM(1)EKLTWPNADSK GEEM(91.71)EKLTWPNADSK 4 3 0.15186 13585000 13585000 0 0 NaN 2318500 0 0 3696900 3926100 753390 0 0 2890400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2318500 0 0 0 0 0 0 0 0 3696900 0 0 3926100 0 0 753390 0 0 0 0 0 0 0 0 2890400 0 0 969 1693 445 445 1425 1623 4536;4537;4538;4539;4540 4766;4767;4768;4769;4770;4771 4540 4771 20190902_JH_WT_Ubi_3 7911 4538 4768 20190902_JH_EV_Ubi_3 6746 4538 4768 20190902_JH_EV_Ubi_3 6746 sp|Q8WUX1|S38A5_HUMAN 42 sp|Q8WUX1|S38A5_HUMAN sp|Q8WUX1|S38A5_HUMAN sp|Q8WUX1|S38A5_HUMAN Sodium-coupled neutral amino acid transporter 5 OS=Homo sapiens OX=9606 GN=SLC38A5 PE=1 SV=1 1 110.843 4.60254E-05 110.84 63.237 110.84 1 93.1063 0.000824244 93.106 1 72.6617 0.00550847 72.662 1 55.5459 0.0248762 55.546 1 99.2379 0.000404456 99.238 1 110.843 4.60254E-05 110.84 1 M LPSRGPAPGSKPVQFMDFEGKTSFGMSVFNL X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPXXXXXXXXXX GPAPGSKPVQFM(1)DFEGK GPAPGSKPVQFM(110.84)DFEGK 12 3 -1.8952 44050000 44050000 0 0 3.4667 0 9112200 0 2191700 3481000 11977000 17288000 0 0 NaN 1.9474 NaN NaN NaN 1.492 NaN NaN NaN 0 0 0 9112200 0 0 0 0 0 2191700 0 0 3481000 0 0 11977000 0 0 17288000 0 0 0 0 0 0 0 0 970 1695 42 42 1641 1869 5247;5248;5249;5250;5251 5524;5525;5526;5527;5528;5529 5251 5529 20190902_JH_MUT_Ubi_3 7338 5251 5529 20190902_JH_MUT_Ubi_3 7338 5251 5529 20190902_JH_MUT_Ubi_3 7338 sp|Q8WW43-2|APH1B_HUMAN;sp|Q8WW43|APH1B_HUMAN 113;113 sp|Q8WW43-2|APH1B_HUMAN sp|Q8WW43-2|APH1B_HUMAN sp|Q8WW43-2|APH1B_HUMAN Isoform 2 of Gamma-secretase subunit APH-1B OS=Homo sapiens OX=9606 GN=APH1B;sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens OX=9606 GN=APH1B PE=1 SV=3 1 76.0513 0.00214199 76.051 43.126 76.051 1 76.0513 0.00214199 76.051 1 M SEGLKSINPGETAPSMRLLAYAFMTLVIILL X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX ASEGLKSINPGETAPSM(1)R ASEGLKSINPGETAPSM(76.05)R 17 3 0.16577 2282900 2282900 0 0 NaN 0 0 0 0 0 0 0 2282900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2282900 0 0 0 0 0 971 1699 113 113 267 315 920 999 920 999 20190902_JH_WT_Ubi_2 7234 920 999 20190902_JH_WT_Ubi_2 7234 920 999 20190902_JH_WT_Ubi_2 7234 sp|Q8WWI5|CTL1_HUMAN 650 sp|Q8WWI5|CTL1_HUMAN sp|Q8WWI5|CTL1_HUMAN sp|Q8WWI5|CTL1_HUMAN Choline transporter-like protein 1 OS=Homo sapiens OX=9606 GN=SLC44A1 PE=1 SV=1 1 218.942 7.58126E-47 218.94 155.38 218.94 1 218.942 7.58126E-47 218.94 1 M EAGKGGVADSRELKPMASGASSA________ X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX ELKPM(1)ASGASSA ELKPM(218.94)ASGASSA 5 2 -1.5802 32027000 32027000 0 0 NaN 0 0 0 0 32027000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 32027000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972 1701 650 650 1003 1132 3206 3369 3206 3369 20190902_JH_EV_Ubi_3 4373 3206 3369 20190902_JH_EV_Ubi_3 4373 3206 3369 20190902_JH_EV_Ubi_3 4373 sp|Q92576-2|PHF3_HUMAN;sp|Q92576|PHF3_HUMAN 45;133 sp|Q92576-2|PHF3_HUMAN sp|Q92576-2|PHF3_HUMAN sp|Q92576-2|PHF3_HUMAN Isoform 2 of PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3;sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3 1 69.2755 0.00790044 93.561 23.123 69.276 1 87.7889 0.0112438 87.789 1 70.9415 0.0242507 70.942 1 75.5657 0.0185818 75.566 1 93.5609 0.00790044 93.561 1 69.2755 0.0186159 75.509 1 M VEENSVRSPRKSPRLMAQEQVRSLRQSTIAK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX LM(1)AQEQVRSLR LM(69.28)AQEQVRSLR 2 3 0.43972 10481000000 10481000000 0 0 NaN 0 0 2801800000 1331800000 1702000000 4453000000 35078000 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2801800000 0 0 1331800000 0 0 1702000000 0 0 4453000000 0 0 35078000 0 0 0 0 0 0 0 0 973 1713 45 45 2714 3085;3086 8805;8806;8807;8808;8809;8810 9260;9261;9262;9263;9264;9265;9266 8810 9266 20190902_JH_MUT_Ubi_3 5859 8807 9262 20190902_JH_MUT_Ubi_2 5672 8807 9262 20190902_JH_MUT_Ubi_2 5672 sp|Q92597|NDRG1_HUMAN 67 sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 PE=1 SV=1 1 56.9514 0.0109093 62.14 35.599 56.951 1 41.7427 0.029703 41.743 1 57.5202 0.0203007 57.52 1 62.1402 0.0153414 62.14 1 56.9514 0.0109093 57.788 1 M PKGNRPVILTYHDIGMNHKTCYNPLFNYEDM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPXXXXXXXXXXXX PVILTYHDIGM(1)NHK PVILTYHDIGM(56.95)NHK 11 4 0.09178 29623000 29623000 0 0 NaN 0 0 0 0 2524300 599390 0 4078000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 2524300 0 0 599390 0 0 0 0 0 4078000 0 0 0 0 0 974 1714 67 67 1635;3556 1863;4053 5229;5230;11420;11421;11422 5504;5505;11993;11994;11995 11422 11995 20190902_JH_WT_Ubi_2 7755 11421 11994 20190902_JH_MUT_Ubi_2 6549 5230 5505 20190902_JH_WT_Ubi_2 6809 sp|Q92597|NDRG1_HUMAN;sp|Q92597-3|NDRG1_HUMAN;sp|Q92597-2|NDRG1_HUMAN 190;109;124 sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 PE=1 SV=1;sp|Q92597-3|NDRG1_HUMAN Isoform 3 of Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1;sp|Q92597-2|NDRG1_HUMAN Isoform 2 of Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 1 51.4954 0.0167855 51.495 18.501 51.495 1 48.8475 0.0218846 48.848 1 51.4954 0.0167855 51.495 1 M WAASKISGWTQALPDMVVSHLFGKEEMQSNV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX ISGWTQALPDM(1)VVSHLFGK ISGWTQALPDM(51.5)VVSHLFGK 11 3 -1.0444 7133200 7133200 0 0 0.44106 0 1194900 5938300 0 0 0 0 0 0 NaN 0.34235 0.46823 NaN NaN NaN NaN NaN NaN 0 0 0 1194900 0 0 5938300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 975 1714 190 190 2258 2569 7402;7403 7781;7782 7403 7782 20190821_JH_WT_Ubi 13933 7403 7782 20190821_JH_WT_Ubi 13933 7403 7782 20190821_JH_WT_Ubi 13933 sp|Q92597|NDRG1_HUMAN;sp|Q92597-3|NDRG1_HUMAN;sp|Q92597-2|NDRG1_HUMAN 243;162;177 sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN sp|Q92597|NDRG1_HUMAN Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 PE=1 SV=1;sp|Q92597-3|NDRG1_HUMAN Isoform 3 of Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1;sp|Q92597-2|NDRG1_HUMAN Isoform 2 of Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 1 63.7396 6.06183E-05 63.74 35.297 63.74 1 40.8014 0.00676588 40.801 1 63.7396 6.06183E-05 63.74 1 M INAYNSRRDLEIERPMPGTHTVTLQCPALLV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP PM(1)PGTHTVTLQCPALLVVGDSSPAVDAVVECNSK PM(63.74)PGTHTVTLQCPALLVVGDSSPAVDAVVECNSK 2 3 -1.4004 3986300 3986300 0 0 NaN 0 0 2845800 0 0 0 0 0 1140400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2845800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1140400 0 0 976 1714 243 243 3465 3952 11122;11123 11687;11688 11123 11688 20190902_JH_WT_Ubi_3 13465 11123 11688 20190902_JH_WT_Ubi_3 13465 11123 11688 20190902_JH_WT_Ubi_3 13465 sp|Q92616|GCN1_HUMAN 1617 sp|Q92616|GCN1_HUMAN sp|Q92616|GCN1_HUMAN sp|Q92616|GCN1_HUMAN eIF-2-alpha kinase activator GCN1 OS=Homo sapiens OX=9606 GN=GCN1 PE=1 SV=6 1 147.237 8.63362E-18 147.24 98.189 147.24 1 125.523 6.65188E-09 125.52 1 109.477 1.43632E-05 109.48 1 119.557 1.18515E-06 119.56 1 116.995 2.02028E-06 117 1 147.237 8.63362E-18 147.24 1 M TKFVHFIDAPSLALIMPIVQRAFQDRSTDTR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPXXXXXXXXXX FVHFIDAPSLALIM(1)PIVQR FVHFIDAPSLALIM(147.24)PIVQR 14 3 -0.73741 18329000 18329000 0 0 1.7518 0 0 6001400 0 0 2087300 2188500 3080800 4970700 NaN 0 0.8548 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6001400 0 0 0 0 0 0 0 0 2087300 0 0 2188500 0 0 3080800 0 0 4970700 0 0 977 1717 1617 1617 1323 1499 4171;4172;4173;4174;4175 4383;4384;4385;4386;4387 4175 4387 20190902_JH_WT_Ubi_3 14712 4175 4387 20190902_JH_WT_Ubi_3 14712 4175 4387 20190902_JH_WT_Ubi_3 14712 sp|Q92616|GCN1_HUMAN 2434 sp|Q92616|GCN1_HUMAN sp|Q92616|GCN1_HUMAN sp|Q92616|GCN1_HUMAN eIF-2-alpha kinase activator GCN1 OS=Homo sapiens OX=9606 GN=GCN1 PE=1 SV=6 1 53.3954 0.0024359 73.296 47.43 53.395 1 73.296 0.0024359 73.296 1 53.3954 0.0168931 53.395 1 M VDAVIRKNIVSLLLSMLGHDEDNTRISSAGC X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX NIVSLLLSM(1)LGHDEDNTR NIVSLLLSM(53.4)LGHDEDNTR 9 3 1.163 1663200 1663200 0 0 NaN 0 435780 1227400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 435780 0 0 1227400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 978 1717 2434 2434 3108 3555 10023;10024 10558;10559 10024 10559 20190821_JH_WT_Ubi 14855 10023 10558 20190821_JH_MUT_Ubi 13951 10023 10558 20190821_JH_MUT_Ubi 13951 sp|Q92621|NU205_HUMAN 1147 sp|Q92621|NU205_HUMAN sp|Q92621|NU205_HUMAN sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens OX=9606 GN=NUP205 PE=1 SV=3 1 76.889 0.00010045 76.889 50.215 76.889 1 40.0859 0.0181961 40.086 1 76.889 0.00010045 76.889 1 M QRSHTQRLLHLLLDDMPVKPYSDGEGGIEDE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPP LLHLLLDDM(1)PVKPYSDGEGGIEDENR LLHLLLDDM(76.89)PVKPYSDGEGGIEDENR 9 4 1.1256 3486300 3486300 0 0 NaN 0 0 0 608220 0 2878100 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 608220 0 0 0 0 0 2878100 0 0 0 0 0 0 0 0 0 0 0 979 1718 1147 1147 2696 3067 8769;8770 9223;9224 8770 9224 20190902_JH_MUT_Ubi_2 10978 8770 9224 20190902_JH_MUT_Ubi_2 10978 8770 9224 20190902_JH_MUT_Ubi_2 10978 sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN 161;161;161;161 sp|Q92734-4|TFG_HUMAN sp|Q92734-4|TFG_HUMAN sp|Q92734-4|TFG_HUMAN Isoform 4 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734-3|TFG_HUMAN Isoform 3 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734-2|TFG_HUMAN Isoform 2 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734|TFG_HUMAN Pr 1 61.736 0.00129186 61.736 33.789 61.736 1 61.736 0.00129186 61.736 2 M EKSASDSSGKQSTQVMAASMSAFDPLKNQDE X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPXXXX SASDSSGKQSTQVM(1)AASM(1)SAFDPLK SASDSSGKQSTQVM(61.74)AASM(61.74)SAFDPLK 14 3 0.21059 697270 0 697270 0 NaN 0 0 0 0 0 0 697270 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 697270 0 0 0 0 0 0 0 980 1720 161 161 3834 4355 12131 12722 12131 12722 20190902_JH_MUT_Ubi_3 7714 12131 12722 20190902_JH_MUT_Ubi_3 7714 12131 12722 20190902_JH_MUT_Ubi_3 7714 sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN 165;165;165;165 sp|Q92734-4|TFG_HUMAN sp|Q92734-4|TFG_HUMAN sp|Q92734-4|TFG_HUMAN Isoform 4 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734-3|TFG_HUMAN Isoform 3 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734-2|TFG_HUMAN Isoform 2 of Protein TFG OS=Homo sapiens OX=9606 GN=TFG;sp|Q92734|TFG_HUMAN Pr 1 61.736 0.00129186 61.736 33.789 61.736 1 61.736 0.00129186 61.736 2 M SDSSGKQSTQVMAASMSAFDPLKNQDEINKN X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX SASDSSGKQSTQVM(1)AASM(1)SAFDPLK SASDSSGKQSTQVM(61.74)AASM(61.74)SAFDPLK 18 3 0.21059 697270 0 697270 0 NaN 0 0 0 0 0 0 697270 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 697270 0 0 0 0 0 0 0 981 1720 165 165 3834 4355 12131 12722 12131 12722 20190902_JH_MUT_Ubi_3 7714 12131 12722 20190902_JH_MUT_Ubi_3 7714 12131 12722 20190902_JH_MUT_Ubi_3 7714 sp|Q92797-2|SYMPK_HUMAN;sp|Q92797|SYMPK_HUMAN 243;243 sp|Q92797-2|SYMPK_HUMAN sp|Q92797-2|SYMPK_HUMAN sp|Q92797-2|SYMPK_HUMAN Isoform 2 of Symplekin OS=Homo sapiens OX=9606 GN=SYMPK;sp|Q92797|SYMPK_HUMAN Symplekin OS=Homo sapiens OX=9606 GN=SYMPK PE=1 SV=2 1 65.4537 0.00141732 65.454 26.217 65.454 1 40.1974 0.0276877 40.197 1 65.4537 0.00141732 65.454 1 M LWEEGKAALEQLLKFMVHPAISSINLTTALG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP FM(1)VHPAISSINLTTALGSLANIAR FM(65.45)VHPAISSINLTTALGSLANIAR 2 3 -0.44983 12956000 12956000 0 0 NaN 0 4028000 8928000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 4028000 0 0 8928000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 982 1722 243 243 1266 1433 4014;4015 4222;4223 4015 4223 20190821_JH_WT_Ubi 14735 4015 4223 20190821_JH_WT_Ubi 14735 4015 4223 20190821_JH_WT_Ubi 14735 sp|Q92841-1|DDX17_HUMAN;sp|Q92841-3|DDX17_HUMAN;sp|Q92841-2|DDX17_HUMAN;sp|Q92841|DDX17_HUMAN 500;502;502;579 sp|Q92841-1|DDX17_HUMAN sp|Q92841-1|DDX17_HUMAN sp|Q92841-1|DDX17_HUMAN Isoform 2 of Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17;sp|Q92841-3|DDX17_HUMAN Isoform 4 of Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17;sp|Q92841-2|DDX17_HUMAN Isoform 1 69.3307 0.00699678 69.331 46.701 69.331 1 57.5952 0.0233485 57.595 1 64.5368 0.0106855 64.537 1 69.3307 0.00699678 69.331 1 M RSRYRTTSSANNPNLMYQDECDRRLRGVKDG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPXXXXXXX TTSSANNPNLM(1)YQDECDRR TTSSANNPNLM(69.33)YQDECDRR 11 3 0.82641 7398200 7398200 0 0 NaN 0 0 1557300 0 0 0 0 2638500 3202300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1557300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2638500 0 0 3202300 0 0 983 1729 500 500 4644 5270 14871;14872;14873 15625;15626;15627 14873 15627 20190902_JH_WT_Ubi_3 6086 14873 15627 20190902_JH_WT_Ubi_3 6086 14873 15627 20190902_JH_WT_Ubi_3 6086 sp|Q92953|KCNB2_HUMAN 452 sp|Q92953|KCNB2_HUMAN sp|Q92953|KCNB2_HUMAN sp|Q92953|KCNB2_HUMAN Potassium voltage-gated channel subfamily B member 2 OS=Homo sapiens OX=9606 GN=KCNB2 PE=2 SV=2 1 49.7151 0.0310293 49.715 12.651 49.715 1 49.7151 0.0310293 49.715 M REALERAKRNGSIVSMNLKDAFARSMELIDV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPXXXXXXXXXXXX RNGSIVSM(1)NLK RNGSIVSM(49.72)NLK 8 2 -2.1019 3450200 3450200 0 0 NaN 0 0 0 0 0 0 0 3450200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3450200 0 0 0 0 0 984 1734 452 452 3771 4285 11941 12524 11941 12524 20190902_JH_WT_Ubi_2 7041 11941 12524 20190902_JH_WT_Ubi_2 7041 11941 12524 20190902_JH_WT_Ubi_2 7041 sp|Q92993-4|KAT5_HUMAN;sp|Q92993-3|KAT5_HUMAN 1;1 sp|Q92993-4|KAT5_HUMAN sp|Q92993-4|KAT5_HUMAN sp|Q92993-4|KAT5_HUMAN Isoform 4 of Histone acetyltransferase KAT5 OS=Homo sapiens OX=9606 GN=KAT5;sp|Q92993-3|KAT5_HUMAN Isoform 3 of Histone acetyltransferase KAT5 OS=Homo sapiens OX=9606 GN=KAT5 1 59.4259 0.0182656 59.426 29.652 59.426 1 59.4259 0.0182656 59.426 M _______________MAEVVSPVPGAGRREP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPXX M(1)AEVVSPVPGAGRR M(59.43)AEVVSPVPGAGRR 1 2 -0.89253 1808200 1808200 0 0 NaN 0 0 1808200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1808200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 985 1736 1 1 2876 3264 9275 9761 9275 9761 20190821_JH_WT_Ubi 13984 9275 9761 20190821_JH_WT_Ubi 13984 9275 9761 20190821_JH_WT_Ubi 13984 sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN 391;407 sp|Q93009-3|UBP7_HUMAN sp|Q93009-3|UBP7_HUMAN sp|Q93009-3|UBP7_HUMAN Isoform 3 of Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens OX=9606 GN=USP7;sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens OX=9606 GN=USP7 PE=1 SV=2 1 56.9362 0.0259161 56.936 22.252 56.936 1 56.9362 0.0259161 56.936 1 M GVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXPPPPPPPPPPPPPPXXXXXXXXXXXXXX FLTLPPVLHLQLM(1)R FLTLPPVLHLQLM(56.94)R 13 3 -0.66537 12875000 12875000 0 0 2.7639 0 0 12875000 0 0 0 0 0 0 NaN NaN 2.7639 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 12875000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 986 1739 391 391 1259 1424 4001 4209 4001 4209 20190821_JH_WT_Ubi 13069 4001 4209 20190821_JH_WT_Ubi 13069 4001 4209 20190821_JH_WT_Ubi 13069 sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN 394;410 sp|Q93009-3|UBP7_HUMAN sp|Q93009-3|UBP7_HUMAN sp|Q93009-3|UBP7_HUMAN Isoform 3 of Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens OX=9606 GN=USP7;sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens OX=9606 GN=USP7 PE=1 SV=2 1 74.4284 0.00565153 74.428 48.989 74.428 1 74.4284 0.00565153 74.428 1 M FLTLPPVLHLQLMRFMYDPQTDQNIKINDRF X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPX FM(1)YDPQTDQNIKINDR FM(74.43)YDPQTDQNIKINDR 2 3 -2.767 1758500 1758500 0 0 NaN 0 1758500 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1758500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 987 1739 394 394 1267 1434 4016 4224 4016 4224 20190821_JH_MUT_Ubi 6508 4016 4224 20190821_JH_MUT_Ubi 6508 4016 4224 20190821_JH_MUT_Ubi 6508 sp|Q93034|CUL5_HUMAN 723 sp|Q93034|CUL5_HUMAN sp|Q93034|CUL5_HUMAN sp|Q93034|CUL5_HUMAN Cullin-5 OS=Homo sapiens OX=9606 GN=CUL5 PE=1 SV=4 1 139.323 7.67597E-06 139.32 101.09 139.32 1 48.1146 0.0321785 48.115 1 124.385 0.000168351 124.39 1 114.71 0.000504505 114.71 1 62.5281 0.0170902 62.528 1 77.1237 0.00770016 77.124 1 129.742 9.03692E-05 129.74 1 71.1532 0.011052 71.153 1 83.2258 0.00570559 83.226 1 139.323 7.67597E-06 139.32 1;2 M VQLRILRTQEAIIQIMKMRKKISNAQLQTEL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPXXXXXXXXXXXX TQEAIIQIM(1)KM(1)R TQEAIIQIM(139.32)KM(139.32)R 9 3 -1.2773 127220000 16961000 110260000 0 4.323 1652400 7402200 23988000 1172200 4199500 24195000 12691000 27086000 24833000 NaN NaN 2.0252 NaN NaN 4.7286 NaN 6.3841 3.0194 0 1652400 0 2053300 5348900 0 4488800 19499000 0 0 1172200 0 0 4199500 0 0 24195000 0 0 12691000 0 5508500 21578000 0 4910400 19922000 0 988 1740 723 723 4576 5195;5196 14601;14602;14603;14604;14605;14606;14607;14608;14609;14610;14614;14616;14618 15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15358;15360;15362 14609 15353 20190902_JH_WT_Ubi_3 7176 14609 15353 20190902_JH_WT_Ubi_3 7176 14609 15353 20190902_JH_WT_Ubi_3 7176 sp|Q93034|CUL5_HUMAN 725 sp|Q93034|CUL5_HUMAN sp|Q93034|CUL5_HUMAN sp|Q93034|CUL5_HUMAN Cullin-5 OS=Homo sapiens OX=9606 GN=CUL5 PE=1 SV=4 1 139.323 7.67597E-06 139.32 101.09 139.32 1 48.1146 0.0321785 48.115 1 124.385 0.000168351 124.39 1 114.71 0.000504505 120.55 1 62.5281 0.0170902 62.528 1 77.1237 0.00770016 77.124 1 129.742 9.03692E-05 129.74 1 71.1532 0.011052 83.226 1 83.2258 0.00426273 100.04 1 139.323 7.67597E-06 139.32 1;2 M LRILRTQEAIIQIMKMRKKISNAQLQTELVE X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPXXXXXXXXXXXXXX TQEAIIQIM(1)KM(1)R TQEAIIQIM(139.32)KM(139.32)R 11 3 -1.2773 160480000 50221000 110260000 0 5.4531 1652400 9060100 30373000 1172200 4199500 30935000 18045000 33710000 31332000 NaN NaN 2.5643 NaN NaN 6.0458 NaN 7.9453 3.8097 0 1652400 0 3711100 5348900 0 10874000 19499000 0 0 1172200 0 0 4199500 0 6739800 24195000 0 5353800 12691000 0 12132000 21578000 0 11410000 19922000 0 989 1740 725 725 4576 5195;5196 14601;14602;14603;14604;14605;14606;14607;14608;14609;14611;14612;14613;14615;14617;14619 15345;15346;15347;15348;15349;15350;15351;15352;15353;15355;15356;15357;15359;15361;15363 14609 15353 20190902_JH_WT_Ubi_3 7176 14609 15353 20190902_JH_WT_Ubi_3 7176 14609 15353 20190902_JH_WT_Ubi_3 7176 sp|Q93052|LPP_HUMAN 23 sp|Q93052|LPP_HUMAN sp|Q93052|LPP_HUMAN sp|Q93052|LPP_HUMAN Lipoma-preferred partner OS=Homo sapiens OX=9606 GN=LPP PE=1 SV=1 1 77.221 4.32366E-05 86.546 54.728 77.221 1 45.0687 0.0261662 45.069 1 86.5465 4.32366E-05 86.546 1 77.221 0.000403273 77.221 1 M PPKSTGEPLGHVPARMETTHSFGNPSISVST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ETTHSFGNPSISVSTQQPPK M(77.22)ETTHSFGNPSISVSTQQPPK 1 3 -0.026781 7486100 7486100 0 0 3.0566 1936600 0 2356700 0 0 0 0 3192800 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 1936600 0 0 0 0 0 2356700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3192800 0 0 0 0 0 990 1741 23 23 2908 3302 9373;9374;9375 9866;9867;9868 9375 9868 20190902_JH_WT_Ubi_2 8328 9374 9867 20190821_JH_WT_Ubi 6267 9374 9867 20190821_JH_WT_Ubi 6267 sp|Q93052|LPP_HUMAN 345 sp|Q93052|LPP_HUMAN sp|Q93052|LPP_HUMAN sp|Q93052|LPP_HUMAN Lipoma-preferred partner OS=Homo sapiens OX=9606 GN=LPP PE=1 SV=1 1 57.8294 4.86872E-05 85.881 41.153 57.829 1 85.8815 4.86872E-05 85.881 1 57.8294 0.00748722 57.829 1 M PGYTPPGAGNQNPPGMYPVTGPKKTYITDPV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX REPGYTPPGAGNQNPPGM(1)YPVTGPK REPGYTPPGAGNQNPPGM(57.83)YPVTGPK 18 3 -0.73704 3990200 3990200 0 0 NaN 0 0 0 0 0 0 0 2324400 1665800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2324400 0 0 1665800 0 0 991 1741 345 345 3740 4254 11867;11868 12449;12450 11868 12450 20190902_JH_WT_Ubi_3 8098 11867 12449 20190902_JH_WT_Ubi_2 8466 11867 12449 20190902_JH_WT_Ubi_2 8466 sp|Q969N2-6|PIGT_HUMAN;sp|Q969N2-5|PIGT_HUMAN;sp|Q969N2|PIGT_HUMAN;sp|Q969N2-3|PIGT_HUMAN;sp|Q969N2-2|PIGT_HUMAN;sp|Q969N2-4|PIGT_HUMAN 363;374;430;219;236;328 sp|Q969N2-6|PIGT_HUMAN sp|Q969N2-6|PIGT_HUMAN sp|Q969N2-6|PIGT_HUMAN Isoform 6 of GPI transamidase component PIG-T OS=Homo sapiens OX=9606 GN=PIGT;sp|Q969N2-5|PIGT_HUMAN Isoform 5 of GPI transamidase component PIG-T OS=Homo sapiens OX=9606 GN=PIGT;sp|Q969N2|PIGT_HUMAN GPI transamidase component PIG-T 1 57.7883 0.0107395 57.788 36.783 57.788 1 57.7883 0.0107395 57.788 1 M HYQPAQDRLQPHLLEMLIQLPANSVTKVSIQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPXXXX LQPHLLEM(1)LIQLPANSVTK LQPHLLEM(57.79)LIQLPANSVTK 8 3 -2.4143 610470 610470 0 0 NaN 0 0 0 0 610470 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 610470 0 0 0 0 0 0 0 0 0 0 0 0 0 0 992 1749 363 363 2789 3165 9008 9478;9479 9008 9479 20190902_JH_EV_Ubi_3 11765 9008 9479 20190902_JH_EV_Ubi_3 11765 9008 9479 20190902_JH_EV_Ubi_3 11765 sp|Q96AB3-2|ISOC2_HUMAN;sp|Q96AB3|ISOC2_HUMAN 56;56 sp|Q96AB3-2|ISOC2_HUMAN sp|Q96AB3-2|ISOC2_HUMAN sp|Q96AB3-2|ISOC2_HUMAN Isoform 2 of Isochorismatase domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ISOC2;sp|Q96AB3|ISOC2_HUMAN Isochorismatase domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ISOC2 PE=1 SV=1 1 87.6476 2.22038E-08 87.648 77.136 87.648 1 87.6476 2.22038E-08 87.648 1 M AARMLKVARLLEVPVMLTEQYPQGLGPTVPE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP LLEVPVM(1)LTEQYPQGLGPTVPELGTEGLRPLAK LLEVPVM(87.65)LTEQYPQGLGPTVPELGTEGLRPLAK 7 3 1.8128 1977100 1977100 0 0 NaN 0 0 0 0 0 0 0 0 1977100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1977100 0 0 993 1754 56 56 2689 3058 8734 9183 8734 9183 20190902_JH_WT_Ubi_3 14973 8734 9183 20190902_JH_WT_Ubi_3 14973 8734 9183 20190902_JH_WT_Ubi_3 14973 sp|Q96B97-3|SH3K1_HUMAN;sp|Q96B97-2|SH3K1_HUMAN;sp|Q96B97|SH3K1_HUMAN 318;519;556 sp|Q96B97-3|SH3K1_HUMAN sp|Q96B97-3|SH3K1_HUMAN sp|Q96B97-3|SH3K1_HUMAN Isoform 3 of SH3 domain-containing kinase-binding protein 1 OS=Homo sapiens OX=9606 GN=SH3KBP1;sp|Q96B97-2|SH3K1_HUMAN Isoform 2 of SH3 domain-containing kinase-binding protein 1 OS=Homo sapiens OX=9606 GN=SH3KBP1;sp|Q96B97|SH3K1_HU 1 122.207 6.41701E-22 127.14 87.854 122.21 1 127.141 6.41701E-22 127.14 1 115.336 4.85863E-17 115.34 1 122.207 5.96207E-18 122.21 1 M QVSDNKASLPPKPGTMAAGGGGPAPLSSAAP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP PGTM(1)AAGGGGPAPLSSAAPSPLSSSLGTAGHR PGTM(122.21)AAGGGGPAPLSSAAPSPLSSSLGTAGHR 4 3 0.3083 31693000 31693000 0 0 16.586 0 0 8579800 0 0 0 0 10616000 12497000 NaN NaN NaN NaN NaN NaN NaN 5.5556 NaN 0 0 0 0 0 0 8579800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10616000 0 0 12497000 0 0 994 1760 318 318 3367 3844 10790;10791;10792 11351;11352;11353 10792 11353 20190902_JH_WT_Ubi_3 10079 10790 11351 20190821_JH_WT_Ubi 8450 10790 11351 20190821_JH_WT_Ubi 8450 sp|Q96DX7|TRI44_HUMAN 307 sp|Q96DX7|TRI44_HUMAN sp|Q96DX7|TRI44_HUMAN sp|Q96DX7|TRI44_HUMAN Tripartite motif-containing protein 44 OS=Homo sapiens OX=9606 GN=TRIM44 PE=1 SV=1 1 112.568 3.94796E-22 149.82 84.351 112.57 1 65.416 0.00149532 65.416 1 77.6306 0.000211629 77.631 1 121.355 2.06714E-09 121.35 1 149.821 3.94796E-22 149.82 1 131.858 5.71326E-12 131.86 1 64.3177 0.00163279 64.318 1 89.6592 2.65882E-05 89.659 1 112.568 1.19832E-08 112.57 2 M VTEILADIQSHMDRLMTQMAQAKEQLDTSNE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP LM(1)TQM(1)AQAKEQLDTSNESAEPK LM(112.57)TQM(112.57)AQAKEQLDTSNESAEPK 2 3 1.0779 9602400 0 9602400 0 NaN 970900 450220 0 1521600 1485700 914310 1040500 1635800 1583400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 970900 0 0 450220 0 0 0 0 0 1521600 0 0 1485700 0 0 914310 0 0 1040500 0 0 1635800 0 0 1583400 0 995 1772 307 307 2722 3095 8821;8822;8823;8824;8825;8826;8827;8828;8829 9278;9279;9280;9281;9282;9283;9284;9285;9286 8829 9286 20190902_JH_WT_Ubi_3 6489 8823 9280 20190902_JH_EV_Ubi_3 5360 8823 9280 20190902_JH_EV_Ubi_3 5360 sp|Q96DX7|TRI44_HUMAN 310 sp|Q96DX7|TRI44_HUMAN sp|Q96DX7|TRI44_HUMAN sp|Q96DX7|TRI44_HUMAN Tripartite motif-containing protein 44 OS=Homo sapiens OX=9606 GN=TRIM44 PE=1 SV=1 1 112.568 3.94796E-22 149.82 84.351 112.57 1 65.416 0.00149532 65.416 1 77.6306 0.000211629 77.631 1 121.355 2.06714E-09 121.35 1 149.821 3.94796E-22 149.82 1 131.858 5.71326E-12 131.86 1 64.3177 0.00163279 64.318 1 89.6592 2.65882E-05 89.659 1 112.568 1.19832E-08 112.57 2 M ILADIQSHMDRLMTQMAQAKEQLDTSNESAE X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP LM(1)TQM(1)AQAKEQLDTSNESAEPK LM(112.57)TQM(112.57)AQAKEQLDTSNESAEPK 5 3 1.0779 9602400 0 9602400 0 NaN 970900 450220 0 1521600 1485700 914310 1040500 1635800 1583400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 970900 0 0 450220 0 0 0 0 0 1521600 0 0 1485700 0 0 914310 0 0 1040500 0 0 1635800 0 0 1583400 0 996 1772 310 310 2722 3095 8821;8822;8823;8824;8825;8826;8827;8828;8829 9278;9279;9280;9281;9282;9283;9284;9285;9286 8829 9286 20190902_JH_WT_Ubi_3 6489 8823 9280 20190902_JH_EV_Ubi_3 5360 8823 9280 20190902_JH_EV_Ubi_3 5360 sp|Q96EI5|TCAL4_HUMAN;sp|Q96EI5-2|TCAL4_HUMAN 148;291 sp|Q96EI5|TCAL4_HUMAN sp|Q96EI5|TCAL4_HUMAN sp|Q96EI5|TCAL4_HUMAN Transcription elongation factor A protein-like 4 OS=Homo sapiens OX=9606 GN=TCEAL4 PE=1 SV=2;sp|Q96EI5-2|TCAL4_HUMAN Isoform 2 of Transcription elongation factor A protein-like 4 OS=Homo sapiens OX=9606 GN=TCEAL4 1 83.3699 1.63953E-08 124.5 7.0134 83.37 1 124.498 1.63953E-08 124.5 1 83.3699 0.000532933 83.37 2 M GLAHYLKEYKEAIHDMNFSNEDMIREFDNMA X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX EYKEAIHDM(1)NFSNEDM(1)IR EYKEAIHDM(83.37)NFSNEDM(83.37)IR 9 3 0.32326 17515000 0 17515000 0 NaN 8228300 0 0 0 9287100 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 8228300 0 0 0 0 0 0 0 0 0 0 0 9287100 0 0 0 0 0 0 0 0 0 0 0 0 0 997 1773 148 148 1161 1309;1310 3693;3694 3887;3888 3694 3888 20190902_JH_EV_Ubi_3 6106 3693 3887 20190821_JH_EV_Ubi 5599 3693 3887 20190821_JH_EV_Ubi 5599 sp|Q96EI5|TCAL4_HUMAN;sp|Q96EI5-2|TCAL4_HUMAN 155;298 sp|Q96EI5|TCAL4_HUMAN sp|Q96EI5|TCAL4_HUMAN sp|Q96EI5|TCAL4_HUMAN Transcription elongation factor A protein-like 4 OS=Homo sapiens OX=9606 GN=TCEAL4 PE=1 SV=2;sp|Q96EI5-2|TCAL4_HUMAN Isoform 2 of Transcription elongation factor A protein-like 4 OS=Homo sapiens OX=9606 GN=TCEAL4 1 83.3699 1.63953E-08 124.5 7.0134 83.37 1 124.498 1.63953E-08 124.5 0.999935 41.8421 0.00398128 72.489 1 83.3699 0.000532933 83.37 0.999997 55.0758 8.53512E-05 106.31 1;2 M EYKEAIHDMNFSNEDMIREFDNMAKVQDEKR X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX EYKEAIHDM(1)NFSNEDM(1)IR EYKEAIHDM(83.37)NFSNEDM(83.37)IR 16 3 0.32326 23154000 5638800 17515000 0 NaN 8228300 1384400 0 0 9287100 4254300 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 8228300 0 1384400 0 0 0 0 0 0 0 0 0 9287100 0 4254300 0 0 0 0 0 0 0 0 0 0 0 998 1773 155 155 1161 1309;1310 3693;3694;3695;3696 3887;3888;3889;3890 3694 3888 20190902_JH_EV_Ubi_3 6106 3693 3887 20190821_JH_EV_Ubi 5599 3693 3887 20190821_JH_EV_Ubi 5599 sp|Q96EL3|RM53_HUMAN 86 sp|Q96EL3|RM53_HUMAN sp|Q96EL3|RM53_HUMAN sp|Q96EL3|RM53_HUMAN 39S ribosomal protein L53, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL53 PE=1 SV=1 1 63.6807 0.00362894 68.576 11.288 63.681 1 68.5765 0.00362894 68.576 1 63.6807 0.00535294 63.681 1 M GHRLIMRGAHLTALEMLTAFASHIRARDAAG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX GAHLTALEM(1)LTAFASHIR GAHLTALEM(63.68)LTAFASHIR 9 4 -0.43911 9220900 9220900 0 0 NaN 0 0 6035300 0 0 0 0 3185600 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6035300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3185600 0 0 0 0 0 999 1774 86 86 1367 1556 4343;4344 4566;4567 4344 4567 20190902_JH_WT_Ubi_2 13393 4343 4566 20190821_JH_WT_Ubi 11821 4343 4566 20190821_JH_WT_Ubi 11821 sp|Q96ET8-3|TV23C_HUMAN;sp|Q9NYZ1|TV23B_HUMAN 185;185 sp|Q96ET8-3|TV23C_HUMAN sp|Q96ET8-3|TV23C_HUMAN sp|Q96ET8-3|TV23C_HUMAN Isoform 3 of Golgi apparatus membrane protein TVP23 homolog C OS=Homo sapiens OX=9606 GN=TVP23C;sp|Q9NYZ1|TV23B_HUMAN Golgi apparatus membrane protein TVP23 homolog B OS=Homo sapiens OX=9606 GN=TVP23B PE=1 SV=2 1 81.9717 0.0139767 81.972 48.709 81.972 1 81.9717 0.0139767 81.972 1 M GYIRCKVRSRKHLTSMATSYFGKQFLRQVSV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPXXXXXXXX HLTSM(1)ATSYFGK HLTSM(81.97)ATSYFGK 5 2 0.5151 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1000 1776 185 185 1941 2207 6306 6635 6306 6635 20190902_JH_WT_Ubi_2 7157 6306 6635 20190902_JH_WT_Ubi_2 7157 6306 6635 20190902_JH_WT_Ubi_2 7157 sp|Q96GC9-2|VMP1_HUMAN;sp|Q96GC9|VMP1_HUMAN 128;320 sp|Q96GC9-2|VMP1_HUMAN sp|Q96GC9-2|VMP1_HUMAN sp|Q96GC9-2|VMP1_HUMAN Isoform 2 of Vacuole membrane protein 1 OS=Homo sapiens OX=9606 GN=VMP1;sp|Q96GC9|VMP1_HUMAN Vacuole membrane protein 1 OS=Homo sapiens OX=9606 GN=VMP1 PE=1 SV=1 1 57.8259 5.87796E-06 93.776 63.349 57.826 1 49.5586 0.0148488 49.559 1 73.3458 0.000756875 73.346 1 93.7762 5.87796E-06 93.776 1 54.6677 0.00895556 54.668 1 50.884 0.0122584 50.884 1 71.4342 0.0011171 71.434 1 57.8259 0.00664818 57.826 1 M KIFVIITFSKHIVEQMVAFIGAVPGIGPSLQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP HIVEQM(1)VAFIGAVPGIGPSLQK HIVEQM(57.83)VAFIGAVPGIGPSLQK 6 3 -0.076053 16497000 16497000 0 0 20.626 2119100 1016800 3550200 0 0 1255700 2532300 1892800 4130000 NaN NaN NaN NaN NaN NaN NaN NaN 5.1637 2119100 0 0 1016800 0 0 3550200 0 0 0 0 0 0 0 0 1255700 0 0 2532300 0 0 1892800 0 0 4130000 0 0 1001 1780 128 128 1884 2140 6078;6079;6080;6081;6082;6083;6084 6399;6400;6401;6402;6403;6404;6405 6084 6405 20190902_JH_WT_Ubi_3 12801 6082 6403 20190821_JH_WT_Ubi 11750 6082 6403 20190821_JH_WT_Ubi 11750 sp|Q96GZ6-8|S41A3_HUMAN;sp|Q96GZ6-6|S41A3_HUMAN;sp|Q96GZ6-7|S41A3_HUMAN;sp|Q96GZ6-4|S41A3_HUMAN;sp|Q96GZ6-3|S41A3_HUMAN;sp|Q96GZ6-5|S41A3_HUMAN;sp|Q96GZ6-9|S41A3_HUMAN;sp|Q96GZ6-2|S41A3_HUMAN;sp|Q96GZ6|S41A3_HUMAN 198;266;289;279;279;306;315;315;315 sp|Q96GZ6-8|S41A3_HUMAN sp|Q96GZ6-8|S41A3_HUMAN sp|Q96GZ6-8|S41A3_HUMAN Isoform 8 of Solute carrier family 41 member 3 OS=Homo sapiens OX=9606 GN=SLC41A3;sp|Q96GZ6-6|S41A3_HUMAN Isoform 6 of Solute carrier family 41 member 3 OS=Homo sapiens OX=9606 GN=SLC41A3;sp|Q96GZ6-7|S41A3_HUMAN Isoform 7 of Solute 1 56.2469 0.00643821 56.247 32.564 56.247 1 56.2469 0.00643821 56.247 1 M GLILSKTVSKQQYKGMAIFTPVICGVGGNLV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP GM(1)AIFTPVICGVGGNLVAIQTSR GM(56.25)AIFTPVICGVGGNLVAIQTSR 2 3 -1.9057 558670 558670 0 0 NaN 558670 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 558670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1002 1781 198 198 1623 1849 5203 5478 5203 5478 20190821_JH_EV_Ubi 13766 5203 5478 20190821_JH_EV_Ubi 13766 5203 5478 20190821_JH_EV_Ubi 13766 sp|Q96H78|S2544_HUMAN 27 sp|Q96H78|S2544_HUMAN sp|Q96H78|S2544_HUMAN sp|Q96H78|S2544_HUMAN Solute carrier family 25 member 44 OS=Homo sapiens OX=9606 GN=SLC25A44 PE=2 SV=1 0.998603 28.1323 0.0291514 45.997 20.611 45.997 0.998603 28.1323 0.0291514 45.997 2 M WEHLDKKKFYVFGVAMTMMIRVSVYPFTLIR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPXXXXXXXXXX FYVFGVAM(0.999)TM(0.91)M(0.091)IR FYVFGVAM(28.13)TM(10.05)M(-10.05)IR 8 2 2.7953 1706400 0 1706400 0 NaN 0 0 0 0 0 0 0 0 1706400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1706400 0 1003 1782 27 27 1347 1529 4243 4462 4243 4462 20190902_JH_WT_Ubi_3 10174 4243 4462 20190902_JH_WT_Ubi_3 10174 4243 4462 20190902_JH_WT_Ubi_3 10174 sp|Q96H78|S2544_HUMAN 29 sp|Q96H78|S2544_HUMAN sp|Q96H78|S2544_HUMAN sp|Q96H78|S2544_HUMAN Solute carrier family 25 member 44 OS=Homo sapiens OX=9606 GN=SLC25A44 PE=2 SV=1 0.910216 10.0528 0.0291514 45.997 20.611 45.997 0.910216 10.0528 0.0291514 45.997 2 M HLDKKKFYVFGVAMTMMIRVSVYPFTLIRTR X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPXXXXXXXXXXXX FYVFGVAM(0.999)TM(0.91)M(0.091)IR FYVFGVAM(28.13)TM(10.05)M(-10.05)IR 10 2 2.7953 1706400 0 1706400 0 NaN 0 0 0 0 0 0 0 0 1706400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1706400 0 1004 1782 29 29 1347 1529 4243 4462 4243 4462 20190902_JH_WT_Ubi_3 10174 4243 4462 20190902_JH_WT_Ubi_3 10174 4243 4462 20190902_JH_WT_Ubi_3 10174 sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN 335;445;486 sp|Q96J02-3|ITCH_HUMAN sp|Q96J02-3|ITCH_HUMAN sp|Q96J02-3|ITCH_HUMAN Isoform 3 of E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens OX=9606 GN=ITCH;sp|Q96J02-2|ITCH_HUMAN Isoform 2 of E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens OX=9606 GN=ITCH;sp|Q96J02|ITCH_HUMAN E3 ubiquitin-pr 1 77.0274 0.000985563 90.754 53.171 77.027 1 90.7058 0.000988853 90.706 1 77.0514 0.00318853 77.051 1 81.0104 0.00242643 81.01 1 90.7538 0.000985563 90.754 1 69.8052 0.00767236 69.805 1 75.1433 0.00362859 75.143 1 70.8023 0.00691705 70.802 1 77.0274 0.00319316 77.027 1 M SQGQLNEKPLPEGWEMRFTVDGIPYFVDHNR X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SQGQLNEKPLPEGWEM(1)R SQGQLNEKPLPEGWEM(77.03)R 16 3 -0.25055 24958000 24958000 0 0 19.727 3829700 1627600 0 3918100 2056500 2461800 3015700 4063500 3984800 3.027 NaN NaN NaN NaN NaN NaN NaN NaN 3829700 0 0 1627600 0 0 0 0 0 3918100 0 0 2056500 0 0 2461800 0 0 3015700 0 0 4063500 0 0 3984800 0 0 1005 1786 335 335 4123 4685 13079;13080;13081;13082;13083;13084;13085;13086 13716;13717;13718;13719;13720;13721;13722;13723 13086 13723 20190902_JH_WT_Ubi_3 8576 13081 13718 20190902_JH_EV_Ubi_3 7370 13081 13718 20190902_JH_EV_Ubi_3 7370 sp|Q96P70|IPO9_HUMAN 509 sp|Q96P70|IPO9_HUMAN sp|Q96P70|IPO9_HUMAN sp|Q96P70|IPO9_HUMAN Importin-9 OS=Homo sapiens OX=9606 GN=IPO9 PE=1 SV=3 1 112.264 4.5975E-16 112.26 94.763 112.26 1 112.264 4.5975E-16 112.26 1 M LLGRALWAASRFTVAMSPELIQQFLQATVSG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP FTVAM(1)SPELIQQFLQATVSGLHETQPPSVR FTVAM(112.26)SPELIQQFLQATVSGLHETQPPSVR 5 3 0.20326 2683500 2683500 0 0 NaN 0 2683500 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2683500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1006 1804 509 509 1316 1491 4159 4371 4159 4371 20190821_JH_MUT_Ubi 14687 4159 4371 20190821_JH_MUT_Ubi 14687 4159 4371 20190821_JH_MUT_Ubi 14687 sp|Q96PP8|GBP5_HUMAN 529 sp|Q96PP8|GBP5_HUMAN sp|Q96PP8|GBP5_HUMAN sp|Q96PP8|GBP5_HUMAN Guanylate-binding protein 5 OS=Homo sapiens OX=9606 GN=GBP5 PE=1 SV=1 1 58.3203 0.0282595 58.32 18.972 58.32 1 58.3203 0.0282595 58.32 M MMQERERLHQEQVRQMEIAKQNWLAEQQKMQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);GlyGly (K);X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX QM(1)EIAKQNWLAEQQK QM(58.32)EIAKQNWLAEQQK 2 3 -1.6461 3551200 3551200 0 0 NaN 0 0 3551200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3551200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1007 1807 529 529 3667 4176 11722 12301 11722 12301 20190821_JH_WT_Ubi 9522 11722 12301 20190821_JH_WT_Ubi 9522 11722 12301 20190821_JH_WT_Ubi 9522 sp|Q96S97|MYADM_HUMAN 24 sp|Q96S97|MYADM_HUMAN sp|Q96S97|MYADM_HUMAN sp|Q96S97|MYADM_HUMAN Myeloid-associated differentiation marker OS=Homo sapiens OX=9606 GN=MYADM PE=1 SV=2 1 112.824 9.4852E-09 112.82 82.335 112.82 1 110.326 5.14358E-08 110.33 1 88.9827 6.32412E-06 88.983 1 64.5215 0.00196496 64.522 1 58.107 0.00530774 58.107 1 94.1764 3.40432E-06 94.176 1 112.824 9.4852E-09 112.82 1 M TITTTTTSSSGLGSPMIVGSPRALTQPLGLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX TTITTTTTSSSGLGSPM(1)IVGSPR TTITTTTTSSSGLGSPM(112.82)IVGSPR 17 3 -0.81847 46131000 46131000 0 0 NaN 2632500 0 6376400 3709700 4457900 0 0 13003000 15951000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2632500 0 0 0 0 0 6376400 0 0 3709700 0 0 4457900 0 0 0 0 0 0 0 0 13003000 0 0 15951000 0 0 1008 1821 24 24 4634 5259 14835;14836;14837;14838;14839;14840 15589;15590;15591;15592;15593;15594 14840 15594 20190902_JH_WT_Ubi_3 9968 14840 15594 20190902_JH_WT_Ubi_3 9968 14840 15594 20190902_JH_WT_Ubi_3 9968 sp|Q96TA1-2|NIBL1_HUMAN;sp|Q96TA1|NIBL1_HUMAN 338;351 sp|Q96TA1-2|NIBL1_HUMAN sp|Q96TA1-2|NIBL1_HUMAN sp|Q96TA1-2|NIBL1_HUMAN Isoform 2 of Niban-like protein 1 OS=Homo sapiens OX=9606 GN=FAM129B;sp|Q96TA1|NIBL1_HUMAN Niban-like protein 1 OS=Homo sapiens OX=9606 GN=FAM129B PE=1 SV=3 1 45.6789 0.0137182 45.679 20.778 45.679 1 45.6789 0.0137182 45.679 1 M RNHVQPYIPSILEALMVPTSQGFTEVRDVFF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX NHVQPYIPSILEALM(1)VPTSQGFTEVR NHVQPYIPSILEALM(45.68)VPTSQGFTEVR 15 3 -0.96397 2027600 2027600 0 0 NaN 0 0 2027600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2027600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1009 1830 338 338 3080 3527 9956 10488 9956 10488 20190821_JH_WT_Ubi 14940 9956 10488 20190821_JH_WT_Ubi 14940 9956 10488 20190821_JH_WT_Ubi 14940 sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN 297;297 sp|Q99460-2|PSMD1_HUMAN sp|Q99460-2|PSMD1_HUMAN sp|Q99460-2|PSMD1_HUMAN Isoform 2 of 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1;sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1 PE=1 SV=2 1 57.0088 3.97885E-20 166.04 129.69 57.009 1 46.4122 0.00567602 46.412 1 63.9254 0.000104307 63.925 1 49.608 3.97885E-20 166.04 1 73.753 1.50197E-05 84.859 1 55.4281 8.43583E-05 106.38 1 109.14 4.27363E-05 109.14 1 81.5073 5.89455E-07 81.656 1 57.0088 0.000217523 98.507 1 M TNTGTVPGSEKDSDSMETEEKTSSAFVGKTP X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;GlyGly (K);X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPXX TVGTPIASVPGSTNTGTVPGSEKDSDSM(1)ETEEK TVGTPIASVPGSTNTGTVPGSEKDSDSM(57.01)ETEEK 28 3 -0.23862 80266000 80266000 0 0 15.497 7656100 0 5929000 8256200 6803700 4058400 0 6961500 10389000 5.1831 0 NaN 11.814 NaN NaN 0 NaN NaN 7656100 0 0 0 0 0 5929000 0 0 8256200 0 0 6803700 0 0 4058400 0 0 0 0 0 6961500 0 0 10389000 0 0 1010 1833 297 297 675;4659 770;5285 2114;2115;2116;2117;2118;2119;2120;14914;14915;14916;14917;14918;14919;14920 2239;2240;2241;2242;2243;2244;2245;15669;15670;15671;15672;15673;15674;15675;15676;15677 14920 15677 20190902_JH_WT_Ubi_3 8732 2114 2239 20190902_JH_EV_Ubi_2 5938 2114 2239 20190902_JH_EV_Ubi_2 5938 sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN 486;486 sp|Q99460-2|PSMD1_HUMAN sp|Q99460-2|PSMD1_HUMAN sp|Q99460-2|PSMD1_HUMAN Isoform 2 of 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1;sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1 PE=1 SV=2 1 125.217 3.79165E-05 125.22 81.226 125.22 1 68.4126 0.0152747 68.413 1 91.9687 0.000967597 91.969 1 125.217 3.79165E-05 125.22 1 M DIVRHGGSLGLGLAAMGTARQDVYDLLKTNL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPXXXXXXXXXXX HGGSLGLGLAAM(1)GTAR HGGSLGLGLAAM(125.22)GTAR 12 3 -0.10555 5186200 5186200 0 0 NaN 0 0 0 0 0 5186200 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5186200 0 0 0 0 0 0 0 0 0 0 0 1011 1833 486 486 1845 2094 5888;5889;5890 6198;6199;6200 5890 6200 20190902_JH_WT_Ubi_2 8030 5890 6200 20190902_JH_WT_Ubi_2 8030 5890 6200 20190902_JH_WT_Ubi_2 8030 sp|Q99471-3|PFD5_HUMAN;sp|Q99471|PFD5_HUMAN 69;114 sp|Q99471-3|PFD5_HUMAN sp|Q99471-3|PFD5_HUMAN sp|Q99471-3|PFD5_HUMAN Isoform 3 of Prefoldin subunit 5 OS=Homo sapiens OX=9606 GN=PFDN5;sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens OX=9606 GN=PFDN5 PE=1 SV=2 1 49.2801 0.0297535 49.28 10.881 49.28 1 49.2801 0.0297535 49.28 M AKDFFKRKIDFLTKQMEKIQPALQEKHAMKQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;GlyGly (K);X;Deamidation (NQ);X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX QM(1)EKIQPALQEK QM(49.28)EKIQPALQEK 2 3 -1.9301 1637700 1637700 0 0 NaN 0 0 0 0 1637700 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1637700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1012 1834 69 69 3668 4177 11723 12302 11723 12302 20190902_JH_EV_Ubi_3 5667 11723 12302 20190902_JH_EV_Ubi_3 5667 11723 12302 20190902_JH_EV_Ubi_3 5667 sp|Q99497|PARK7_HUMAN 17 sp|Q99497|PARK7_HUMAN sp|Q99497|PARK7_HUMAN sp|Q99497|PARK7_HUMAN Protein/nucleic acid deglycase DJ-1 OS=Homo sapiens OX=9606 GN=PARK7 PE=1 SV=2 1 142.895 3.63518E-08 142.89 84.218 142.89 1 142.895 3.63518E-08 142.89 2 M ASKRALVILAKGAEEMETVIPVDVMRRAGIK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPXXXXX GAEEM(1)ETVIPVDVM(1)R GAEEM(142.89)ETVIPVDVM(142.89)R 5 2 -1.0891 8029600 0 8029600 0 NaN 0 0 0 0 0 0 0 0 8029600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8029600 0 1013 1835 17 17 1358 1544 4314 4536 4314 4536 20190902_JH_WT_Ubi_3 10364 4314 4536 20190902_JH_WT_Ubi_3 10364 4314 4536 20190902_JH_WT_Ubi_3 10364 sp|Q99497|PARK7_HUMAN 26 sp|Q99497|PARK7_HUMAN sp|Q99497|PARK7_HUMAN sp|Q99497|PARK7_HUMAN Protein/nucleic acid deglycase DJ-1 OS=Homo sapiens OX=9606 GN=PARK7 PE=1 SV=2 1 142.895 3.63518E-08 142.89 84.218 142.89 1 142.895 3.63518E-08 142.89 2 M AKGAEEMETVIPVDVMRRAGIKVTVAGLAGK X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPXXXXXXXXXXXXXX GAEEM(1)ETVIPVDVM(1)R GAEEM(142.89)ETVIPVDVM(142.89)R 14 2 -1.0891 8029600 0 8029600 0 NaN 0 0 0 0 0 0 0 0 8029600 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8029600 0 1014 1835 26 26 1358 1544 4314 4536 4314 4536 20190902_JH_WT_Ubi_3 10364 4314 4536 20190902_JH_WT_Ubi_3 10364 4314 4536 20190902_JH_WT_Ubi_3 10364 sp|Q99536|VAT1_HUMAN;sp|Q99536-3|VAT1_HUMAN;sp|Q99536-2|VAT1_HUMAN 261;193;127 sp|Q99536|VAT1_HUMAN sp|Q99536|VAT1_HUMAN sp|Q99536|VAT1_HUMAN Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens OX=9606 GN=VAT1 PE=1 SV=2;sp|Q99536-3|VAT1_HUMAN Isoform 3 of Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens OX=9606 GN=VAT1;sp|Q99536-2|VAT1_HUMAN Isofor 1 105.671 1.27588E-06 117.55 63.257 105.67 1 117.549 1.27588E-06 117.55 1 76.1184 0.00106921 76.118 1 105.671 2.63694E-05 105.67 1 M VDEIKKISPKGVDIVMDPLGGSDTAKGYNLL X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPXXXXX ISPKGVDIVM(1)DPLGGSDTAK ISPKGVDIVM(105.67)DPLGGSDTAK 10 3 -0.25308 18439000 18439000 0 0 1.702 0 0 3859900 0 0 3473700 0 11106000 0 NaN NaN 0.7334 NaN NaN NaN NaN 4.4838 0 0 0 0 0 0 0 3859900 0 0 0 0 0 0 0 0 3473700 0 0 0 0 0 11106000 0 0 0 0 0 1015 1836 261 261 2262 2574 7409;7410;7411 7788;7789;7790 7411 7790 20190902_JH_WT_Ubi_2 10498 7410 7789 20190821_JH_WT_Ubi 8332 7410 7789 20190821_JH_WT_Ubi 8332 sp|Q99536|VAT1_HUMAN 112 sp|Q99536|VAT1_HUMAN sp|Q99536|VAT1_HUMAN sp|Q99536|VAT1_HUMAN Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens OX=9606 GN=VAT1 PE=1 SV=2 1 115.111 2.18498E-12 115.11 90.237 115.11 1 115.111 2.18498E-12 115.11 1 M QGLYDRLPPLPVTPGMEGAGVVIAVGEGVSD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP LPPLPVTPGM(1)EGAGVVIAVGEGVSDR LPPLPVTPGM(115.11)EGAGVVIAVGEGVSDR 10 3 -0.87648 2002500 2002500 0 0 0.58682 0 0 2002500 0 0 0 0 0 0 NaN NaN 0.58682 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2002500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1016 1836 112 112 2762 3136 8935 9399 8935 9399 20190821_JH_WT_Ubi 14158 8935 9399 20190821_JH_WT_Ubi 14158 8935 9399 20190821_JH_WT_Ubi 14158 sp|Q99685|MGLL_HUMAN;sp|Q99685-2|MGLL_HUMAN 64;74 sp|Q99685|MGLL_HUMAN sp|Q99685|MGLL_HUMAN sp|Q99685|MGLL_HUMAN Monoglyceride lipase OS=Homo sapiens OX=9606 GN=MGLL PE=1 SV=2;sp|Q99685-2|MGLL_HUMAN Isoform 2 of Monoglyceride lipase OS=Homo sapiens OX=9606 GN=MGLL 1 81.3567 0.000228788 81.357 50.4 81.357 1 79.462 0.000300437 79.462 1 60.669 0.00577526 60.669 1 79.462 0.000300437 79.462 1 54.2249 0.0119267 54.225 1 81.3567 0.000228788 81.357 2 M HGAGEHSGRYEELARMLMGLDLLVFAHDHVG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LM(1)GLDLLVFAHDHVGHGQSEGER M(81.36)LM(81.36)GLDLLVFAHDHVGHGQSEGER 1 4 -1.0022 46298000 0 46298000 0 NaN 12329000 10802000 0 0 0 0 7159500 8513900 7493700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 12329000 0 0 10802000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7159500 0 0 8513900 0 0 7493700 0 1017 1841 64 64 2939 3341 9473;9474;9475;9476;9477 9971;9972;9973;9974;9975;9976;9977 9477 9977 20190902_JH_WT_Ubi_3 11060 9477 9977 20190902_JH_WT_Ubi_3 11060 9477 9977 20190902_JH_WT_Ubi_3 11060 sp|Q99685|MGLL_HUMAN;sp|Q99685-2|MGLL_HUMAN 66;76 sp|Q99685|MGLL_HUMAN sp|Q99685|MGLL_HUMAN sp|Q99685|MGLL_HUMAN Monoglyceride lipase OS=Homo sapiens OX=9606 GN=MGLL PE=1 SV=2;sp|Q99685-2|MGLL_HUMAN Isoform 2 of Monoglyceride lipase OS=Homo sapiens OX=9606 GN=MGLL 1 81.3567 0.000228788 81.357 50.4 81.357 1 79.462 0.000300437 79.462 1 60.669 0.00577526 60.669 1 79.462 0.000300437 79.462 1 54.2249 0.0119267 54.225 1 81.3567 0.000228788 81.357 2 M AGEHSGRYEELARMLMGLDLLVFAHDHVGHG X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP M(1)LM(1)GLDLLVFAHDHVGHGQSEGER M(81.36)LM(81.36)GLDLLVFAHDHVGHGQSEGER 3 4 -1.0022 46298000 0 46298000 0 NaN 12329000 10802000 0 0 0 0 7159500 8513900 7493700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 12329000 0 0 10802000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7159500 0 0 8513900 0 0 7493700 0 1018 1841 66 66 2939 3341 9473;9474;9475;9476;9477 9971;9972;9973;9974;9975;9976;9977 9477 9977 20190902_JH_WT_Ubi_3 11060 9477 9977 20190902_JH_WT_Ubi_3 11060 9477 9977 20190902_JH_WT_Ubi_3 11060 sp|Q99714|HCD2_HUMAN 194 sp|Q99714|HCD2_HUMAN sp|Q99714|HCD2_HUMAN sp|Q99714|HCD2_HUMAN 3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens OX=9606 GN=HSD17B10 PE=1 SV=3 1 100.07 3.52628E-05 100.07 56.276 100.07 1 81.6388 0.000442754 81.639 1 58.0097 0.00908403 58.01 1 52.8661 0.0137633 52.866 1 100.07 3.52628E-05 100.07 1 M TLPIARDLAPIGIRVMTIAPGLFGTPLLTSL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)TIAPGLFGTPLLTSLPEK VM(100.07)TIAPGLFGTPLLTSLPEK 2 3 0.60806 6106100 6106100 0 0 NaN 0 0 0 0 0 579790 1038000 2322400 2166000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 579790 0 0 1038000 0 0 2322400 0 0 2166000 0 0 1019 1843 194 194 4944 5614 15890;15891;15892;15893 16697;16698;16699;16700 15893 16700 20190902_JH_WT_Ubi_3 15347 15893 16700 20190902_JH_WT_Ubi_3 15347 15893 16700 20190902_JH_WT_Ubi_3 15347 sp|Q99729-3|ROAA_HUMAN;sp|Q99729-4|ROAA_HUMAN;sp|Q99729-2|ROAA_HUMAN;sp|Q99729|ROAA_HUMAN 103;103;103;102 sp|Q99729-3|ROAA_HUMAN sp|Q99729-3|ROAA_HUMAN sp|Q99729-3|ROAA_HUMAN Isoform 3 of Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens OX=9606 GN=HNRNPAB;sp|Q99729-4|ROAA_HUMAN Isoform 4 of Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens OX=9606 GN=HNRNPAB;sp|Q99729-2|ROAA_HUMAN Iso 1 53.168 0.0286414 53.168 11.297 53.168 1 53.168 0.0286414 53.168 1 M DYFTKFGEVVDCTIKMDPNTGRSRGFGFILF X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPXXXXXXXXX FGEVVDCTIKM(1)DPNTGR FGEVVDCTIKM(53.17)DPNTGR 11 3 -1.14 2951200 2951200 0 0 NaN 0 0 0 0 0 0 0 0 2951200 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2951200 0 0 1020 1844 103 103 1202 1356 3816 4014 3816 4014 20190902_JH_WT_Ubi_3 8305 3816 4014 20190902_JH_WT_Ubi_3 8305 3816 4014 20190902_JH_WT_Ubi_3 8305 sp|Q99808|S29A1_HUMAN;sp|Q99808-2|S29A1_HUMAN 1;80 sp|Q99808|S29A1_HUMAN sp|Q99808|S29A1_HUMAN sp|Q99808|S29A1_HUMAN Equilibrative nucleoside transporter 1 OS=Homo sapiens OX=9606 GN=SLC29A1 PE=1 SV=3;sp|Q99808-2|S29A1_HUMAN Isoform 2 of Equilibrative nucleoside transporter 1 OS=Homo sapiens OX=9606 GN=SLC29A1 1 53.7564 0.0319872 53.756 14.452 53.756 1 53.7564 0.0319872 53.756 1 M _______________MTTSHQPQDRYKAVWL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPXXXXXX M(1)TTSHQPQDR M(53.76)TTSHQPQDR 1 3 0.58591 25326000 25326000 0 0 NaN 0 0 0 0 0 25326000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25326000 0 0 0 0 0 0 0 0 0 0 0 1021 1848 1 1 2975 3394 9598 10102 9598 10102 20190902_JH_MUT_Ubi_2 2607 9598 10102 20190902_JH_MUT_Ubi_2 2607 9598 10102 20190902_JH_MUT_Ubi_2 2607 sp|Q9BQE3|TBA1C_HUMAN 302 sp|Q9BQE3|TBA1C_HUMAN sp|Q9BQE3|TBA1C_HUMAN sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens OX=9606 GN=TUBA1C PE=1 SV=1 1 156.083 3.07365E-30 161.97 128.26 156.08 1 121.908 2.11075E-10 121.91 1 88.0904 0.00353573 88.09 1 130.445 1.19347E-12 130.45 1 161.97 3.07365E-30 161.97 1 156.083 1.87033E-23 156.08 1 M TVAEITNACFEPANQMVKCDPRHGKYMACCL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX AYHEQLTVAEITNACFEPANQM(1)VK AYHEQLTVAEITNACFEPANQM(156.08)VK 22 3 -0.86699 41373000 41373000 0 0 3.9018 3587000 0 18419000 0 0 0 0 10546000 8821200 NaN NaN 1.737 NaN NaN NaN NaN NaN NaN 3587000 0 0 0 0 0 18419000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10546000 0 0 8821200 0 0 1022 1858 302 302 339 401 1152;1153;1154;1155;1156 1239;1240;1241;1242;1243 1156 1243 20190902_JH_WT_Ubi_3 11109 1155 1242 20190902_JH_WT_Ubi_2 11607 1155 1242 20190902_JH_WT_Ubi_2 11607 sp|Q9BR76|COR1B_HUMAN 419 sp|Q9BR76|COR1B_HUMAN sp|Q9BR76|COR1B_HUMAN sp|Q9BR76|COR1B_HUMAN Coronin-1B OS=Homo sapiens OX=9606 GN=CORO1B PE=1 SV=1 1 72.8223 3.44018E-32 153.83 122.4 72.822 1 119.87 1.39064E-16 119.87 1 153.834 3.44018E-32 153.83 1 72.8223 8.09738E-05 72.822 1 M LKISRRNVLSDSRPAMAPGSSHLGAPASTTT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP PAM(1)APGSSHLGAPASTTTAADATPSGSLAR PAM(72.82)APGSSHLGAPASTTTAADATPSGSLAR 3 3 -0.38503 11169000 11169000 0 0 NaN 0 0 1878800 0 0 0 0 4055400 5234700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1878800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4055400 0 0 5234700 0 0 1023 1863 419 419 3300 3771 10597;10598;10599 11149;11150;11151;11152 10599 11152 20190902_JH_WT_Ubi_3 7912 10598 11151 20190902_JH_WT_Ubi_2 8354 10598 11151 20190902_JH_WT_Ubi_2 8354 sp|Q9BRG2-2|SH23A_HUMAN;sp|Q9BRG2|SH23A_HUMAN 220;342 sp|Q9BRG2-2|SH23A_HUMAN sp|Q9BRG2-2|SH23A_HUMAN sp|Q9BRG2-2|SH23A_HUMAN Isoform 2 of SH2 domain-containing protein 3A OS=Homo sapiens OX=9606 GN=SH2D3A;sp|Q9BRG2|SH23A_HUMAN SH2 domain-containing protein 3A OS=Homo sapiens OX=9606 GN=SH2D3A PE=1 SV=1 1 68.5254 0.00161134 68.525 24.727 68.525 1 68.5254 0.00161134 68.525 1 M QATGLLGVTRDQRGNMGVSSGLELLTLPHGH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GNM(1)GVSSGLELLTLPHGHHLR GNM(68.53)GVSSGLELLTLPHGHHLR 3 4 1.132 4521900 4521900 0 0 2.8907 4521900 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN 0 NaN NaN NaN 4521900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1024 1865 220 220 1633 1860 5226 5501 5226 5501 20190821_JH_EV_Ubi 8111 5226 5501 20190821_JH_EV_Ubi 8111 5226 5501 20190821_JH_EV_Ubi 8111 sp|Q9BSK0|MALD1_HUMAN 96 sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN MARVEL domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MARVELD1 PE=1 SV=1 1 43.2065 0.00600338 43.206 22.438 43.206 1 43.2065 0.00600338 43.206 3 M LGKHELVPVLGSRWLMVNVAHDVLAAALYGA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP WLM(1)VNVAHDVLAAALYGAATGIM(1)SDQM(1)QR WLM(43.21)VNVAHDVLAAALYGAATGIM(43.21)SDQM(43.21)QR 3 3 -0.62626 1764800 0 0 1764800 NaN 0 0 1764800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1764800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1025 1870 96 96 5093 5788 16432 17269 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 sp|Q9BSK0|MALD1_HUMAN 116 sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN MARVEL domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MARVELD1 PE=1 SV=1 1 43.2065 0.00600338 43.206 22.438 43.206 1 43.2065 0.00600338 43.206 3 M HDVLAAALYGAATGIMSDQMQRHSYCNLKDY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX WLM(1)VNVAHDVLAAALYGAATGIM(1)SDQM(1)QR WLM(43.21)VNVAHDVLAAALYGAATGIM(43.21)SDQM(43.21)QR 23 3 -0.62626 1764800 0 0 1764800 NaN 0 0 1764800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1764800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1026 1870 116 116 5093 5788 16432 17269 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 sp|Q9BSK0|MALD1_HUMAN 120 sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN sp|Q9BSK0|MALD1_HUMAN MARVEL domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MARVELD1 PE=1 SV=1 1 43.2065 0.00600338 43.206 22.438 43.206 1 43.2065 0.00600338 43.206 3 M AAALYGAATGIMSDQMQRHSYCNLKDYPLPC X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX WLM(1)VNVAHDVLAAALYGAATGIM(1)SDQM(1)QR WLM(43.21)VNVAHDVLAAALYGAATGIM(43.21)SDQM(43.21)QR 27 3 -0.62626 1764800 0 0 1764800 NaN 0 0 1764800 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 1764800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1027 1870 120 120 5093 5788 16432 17269 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 16432 17269 20190821_JH_WT_Ubi 15273 sp|Q9BTE1-3|DCTN5_HUMAN;sp|Q9BTE1-2|DCTN5_HUMAN;sp|Q9BTE1|DCTN5_HUMAN 1;1;1 sp|Q9BTE1-3|DCTN5_HUMAN sp|Q9BTE1-3|DCTN5_HUMAN sp|Q9BTE1-3|DCTN5_HUMAN Isoform 3 of Dynactin subunit 5 OS=Homo sapiens OX=9606 GN=DCTN5;sp|Q9BTE1-2|DCTN5_HUMAN Isoform 2 of Dynactin subunit 5 OS=Homo sapiens OX=9606 GN=DCTN5;sp|Q9BTE1|DCTN5_HUMAN Dynactin subunit 5 OS=Homo sapiens OX=9606 GN=DCTN5 PE=1 1 46.3622 0.00206583 62.792 37.941 46.362 1 62.7921 0.00206583 62.792 1 46.3622 0.013487 46.362 1 M _______________MELGELLYNKSEYIET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ELGELLYNKSEYIETASGNK M(46.36)ELGELLYNKSEYIETASGNK 1 3 1.8708 1281400 1281400 0 0 NaN 0 0 786680 0 0 0 0 0 494730 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 786680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 494730 0 0 1028 1872 1 1 2903 3297 9364;9365 9857;9858 9365 9858 20190902_JH_WT_Ubi_3 14682 9364 9857 20190821_JH_WT_Ubi 13983 9364 9857 20190821_JH_WT_Ubi 13983 sp|Q9BUF5|TBB6_HUMAN 233 sp|Q9BUF5|TBB6_HUMAN sp|Q9BUF5|TBB6_HUMAN sp|Q9BUF5|TBB6_HUMAN Tubulin beta-6 chain OS=Homo sapiens OX=9606 GN=TUBB6 PE=1 SV=1 1 103.022 2.84468E-10 107.88 86.278 103.02 1 75.5237 0.000181384 75.524 1 68.192 0.000857248 68.192 1 107.877 2.84468E-10 107.88 1 81.329 9.24916E-05 81.329 1 40.1452 0.0250824 40.145 1 103.022 6.93526E-10 103.02 1 M TTPTYGDLNHLVSATMSGVTTSLRFPGQLNA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX LTTPTYGDLNHLVSATM(1)SGVTTSLR LTTPTYGDLNHLVSATM(103.02)SGVTTSLR 17 3 -1.9138 25405000 25405000 0 0 1.4024 0 8009600 0 0 653790 3770500 4746900 3052700 5171000 0 NaN 0 NaN NaN 1.1629 2.4208 2.5679 1.6355 0 0 0 8009600 0 0 0 0 0 0 0 0 653790 0 0 3770500 0 0 4746900 0 0 3052700 0 0 5171000 0 0 1029 1878 233 233 2832 3213 9143;9144;9145;9146;9147;9148 9622;9623;9624;9625;9626;9627;9628 9148 9628 20190902_JH_WT_Ubi_3 13060 9145 9624 20190902_JH_MUT_Ubi_2 12849 9145 9624 20190902_JH_MUT_Ubi_2 12849 sp|Q9BV38|WDR18_HUMAN 325 sp|Q9BV38|WDR18_HUMAN sp|Q9BV38|WDR18_HUMAN sp|Q9BV38|WDR18_HUMAN WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2 1 47.3502 0.00354082 47.35 16.862 47.35 1 47.3502 0.00354082 47.35 1 M KGPVTNAAILLAPVSMLSSDFRPSLPLPHFN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP GPVTNAAILLAPVSM(1)LSSDFRPSLPLPHFNK GPVTNAAILLAPVSM(47.35)LSSDFRPSLPLPHFNK 15 4 1.0031 2741800 2741800 0 0 NaN 0 2741800 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2741800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1030 1881 325 325 1659 1889 5302 5583 5302 5583 20190821_JH_MUT_Ubi 14065 5302 5583 20190821_JH_MUT_Ubi 14065 5302 5583 20190821_JH_MUT_Ubi 14065 sp|Q9BV40|VAMP8_HUMAN 27 sp|Q9BV40|VAMP8_HUMAN sp|Q9BV40|VAMP8_HUMAN sp|Q9BV40|VAMP8_HUMAN Vesicle-associated membrane protein 8 OS=Homo sapiens OX=9606 GN=VAMP8 PE=1 SV=1 1 61.5197 1.24003E-17 147.17 104.01 61.52 1 133.781 1.34427E-09 133.78 1 128.943 6.12151E-09 128.94 1 94.6096 0.000208469 94.61 1 60.6182 0.0114539 60.618 1 95.9538 0.000179674 95.954 1 147.169 1.24003E-17 147.17 1 61.5197 2.10794E-06 118.66 1 118.665 2.10794E-06 118.66 1 60.5419 0.0115585 60.542 1 M RVRNLQSEVEGVKNIMTQNVERILARGENLE X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPXXXXXXXXX NLQSEVEGVKNIM(1)TQNVER NLQSEVEGVKNIM(61.52)TQNVER 13 3 3.2033 50678000 50678000 0 0 10.736 4088500 5382200 6117900 3505000 3213000 12138000 6579500 5444100 4209000 NaN NaN NaN NaN NaN 2.5715 NaN NaN NaN 4088500 0 0 5382200 0 0 6117900 0 0 3505000 0 0 3213000 0 0 12138000 0 0 6579500 0 0 5444100 0 0 4209000 0 0 1031 1882 27 27 3145 3593;3595 10107;10108;10109;10110;10111;10112;10113;10114;10115;10117 10644;10645;10646;10647;10648;10649;10650;10651;10652;10654 10117 10654 20190902_JH_MUT_Ubi_3 8467 10111 10648 20190902_JH_MUT_Ubi_2 8704 10111 10648 20190902_JH_MUT_Ubi_2 8704 sp|Q9BW62|KATL1_HUMAN 246 sp|Q9BW62|KATL1_HUMAN sp|Q9BW62|KATL1_HUMAN sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens OX=9606 GN=KATNAL1 PE=1 SV=1 1 43.2974 0.0250084 43.297 8.9025 43.297 1 43.2974 0.0250084 43.297 2 M PDFFKGIRRPWKGVLMVGPPGTGKTMLAKAV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPXX GVLM(1)VGPPGTGKTM(1)LAK GVLM(43.3)VGPPGTGKTM(43.3)LAK 4 3 2.0528 2311200 0 2311200 0 NaN 0 0 0 0 0 0 2311200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2311200 0 0 0 0 0 0 0 1032 1887 246 246 1744 1984 5566 5860 5566 5860 20190902_JH_MUT_Ubi_3 10645 5566 5860 20190902_JH_MUT_Ubi_3 10645 5566 5860 20190902_JH_MUT_Ubi_3 10645 sp|Q9BW62|KATL1_HUMAN 256 sp|Q9BW62|KATL1_HUMAN sp|Q9BW62|KATL1_HUMAN sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens OX=9606 GN=KATNAL1 PE=1 SV=1 1 43.2974 0.0250084 43.297 8.9025 43.297 1 43.2974 0.0250084 43.297 2 M WKGVLMVGPPGTGKTMLAKAVATECGTTFFN X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPXXXXXXXXXXXX GVLM(1)VGPPGTGKTM(1)LAK GVLM(43.3)VGPPGTGKTM(43.3)LAK 14 3 2.0528 2311200 0 2311200 0 NaN 0 0 0 0 0 0 2311200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2311200 0 0 0 0 0 0 0 1033 1887 256 256 1744 1984 5566 5860 5566 5860 20190902_JH_MUT_Ubi_3 10645 5566 5860 20190902_JH_MUT_Ubi_3 10645 5566 5860 20190902_JH_MUT_Ubi_3 10645 sp|Q9BWM7|SFXN3_HUMAN;sp|Q9H9B4|SFXN1_HUMAN 195;196 sp|Q9BWM7|SFXN3_HUMAN sp|Q9BWM7|SFXN3_HUMAN sp|Q9BWM7|SFXN3_HUMAN Sideroflexin-3 OS=Homo sapiens OX=9606 GN=SFXN3 PE=1 SV=3;sp|Q9H9B4|SFXN1_HUMAN Sideroflexin-1 OS=Homo sapiens OX=9606 GN=SFXN1 PE=1 SV=4 1 111.073 4.65126E-06 111.07 51.559 111.07 1 83.8231 0.00050752 83.823 1 97.2005 0.00208938 97.2 1 59.6726 0.00892906 59.673 1 111.073 4.65126E-06 111.07 1 M PFAAVAAANCINIPLMRQRELQVGIPVADEA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX FVPFAAVAAANCINIPLM(1)R FVPFAAVAAANCINIPLM(111.07)R 18 3 -0.56456 2833400 2833400 0 0 NaN 1387800 0 0 531030 0 0 0 914610 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1387800 0 0 0 0 0 0 0 0 531030 0 0 0 0 0 0 0 0 0 0 0 914610 0 0 0 0 0 1034 1890 195 195 1332 1509 4195;4196;4197;4198 4407;4408;4409;4410 4198 4410 20190902_JH_WT_Ubi_2 15530 4198 4410 20190902_JH_WT_Ubi_2 15530 4198 4410 20190902_JH_WT_Ubi_2 15530 sp|Q9BWS9|CHID1_HUMAN;sp|Q9BWS9-2|CHID1_HUMAN 240;265 sp|Q9BWS9|CHID1_HUMAN sp|Q9BWS9|CHID1_HUMAN sp|Q9BWS9|CHID1_HUMAN Chitinase domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CHID1 PE=1 SV=1;sp|Q9BWS9-2|CHID1_HUMAN Isoform 2 of Chitinase domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CHID1 1 44.788 0.00522666 56.055 35.049 44.788 1 56.0552 0.00522666 56.055 1 44.788 0.0193775 44.788 1 M LVIPPAITPGTDQLGMFTHKEFEQLAPVLDG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX LLALLVIPPAITPGTDQLGM(1)FTHK LLALLVIPPAITPGTDQLGM(44.79)FTHK 20 3 -0.72838 5794100 5794100 0 0 2.845 0 0 3640200 0 0 0 0 0 2154000 NaN NaN 1.7874 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3640200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2154000 0 0 1035 1891 240 240 2673 3038 8679;8680 9127;9128 8680 9128 20190902_JH_WT_Ubi_3 15451 8679 9127 20190821_JH_WT_Ubi 15254 8679 9127 20190821_JH_WT_Ubi 15254 sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN 590;599;614;636;638 sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN Isoform 3 of Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6;sp|Q9BX79|STRA6_HUMAN Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6 PE=1 SV=1;sp|Q9BX79-6|STRA6_HUMAN Isoform 6 of Receptor for ret 1 63.5629 0.000144779 70.407 44.25 63.563 1 42.4162 0.00875626 42.416 1 56.079 0.000292235 67.285 1 53.3902 0.00026537 68.207 1 41.7342 0.00932251 41.734 1 70.4073 0.000144779 70.407 0.999951 44.47 0.000379587 64.289 1 63.5629 0.00806365 63.563 0.999955 43.6783 0.000292322 64.701 1;2;3 M FCSLLLQAQSLLPRTMAAPQDSLRPGEEDEG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP TM(1)AAPQDSLRPGEEDEGM(1)QLLQTKDSM(1)AK TM(63.56)AAPQDSLRPGEEDEGM(63.56)QLLQTKDSM(63.56)AK 2 4 -0.24168 161770000 36431000 2076900 123260000 NaN 13913000 11330000 96391000 10869000 0 0 3262000 0 2076900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 13913000 4769100 0 6561000 28400000 0 67991000 0 0 10869000 0 0 0 0 0 0 3262000 0 0 0 0 0 0 2076900 0 1036 1894 590 590 4518 5128;5129;5130;5131 14407;14408;14409;14410;14411;14412;14413;14414;14415;14416 15145;15146;15147;15148;15149;15150;15151;15152;15153;15154 14415 15153 20190902_JH_WT_Ubi_2 8926 14410 15148 20190902_JH_MUT_Ubi_2 7549 14410 15148 20190902_JH_MUT_Ubi_2 7549 sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN 606;615;630;652;654 sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN Isoform 3 of Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6;sp|Q9BX79|STRA6_HUMAN Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6 PE=1 SV=1;sp|Q9BX79-6|STRA6_HUMAN Isoform 6 of Receptor for ret 1 63.5629 0.000144779 70.407 44.25 63.563 1 42.4162 0.00875626 42.416 1 56.079 0.00091391 56.079 1 53.3902 0.00116649 53.39 1 41.7342 0.00932251 41.734 1 70.4073 0.000144779 70.407 1 63.5629 0.00806365 63.563 3 M AAPQDSLRPGEEDEGMQLLQTKDSMAKGARP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX TM(1)AAPQDSLRPGEEDEGM(1)QLLQTKDSM(1)AK TM(63.56)AAPQDSLRPGEEDEGM(63.56)QLLQTKDSM(63.56)AK 18 4 -0.24168 123260000 0 0 123260000 NaN 13913000 6561000 67991000 10869000 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 13913000 0 0 6561000 0 0 67991000 0 0 10869000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1037 1894 606 606 4518 5128;5129;5130;5131 14407;14408;14409;14410;14411;14415 15145;15146;15147;15148;15149;15153 14415 15153 20190902_JH_WT_Ubi_2 8926 14410 15148 20190902_JH_MUT_Ubi_2 7549 14410 15148 20190902_JH_MUT_Ubi_2 7549 sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN 615;624;639;661;663 sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN sp|Q9BX79-3|STRA6_HUMAN Isoform 3 of Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6;sp|Q9BX79|STRA6_HUMAN Receptor for retinol uptake STRA6 OS=Homo sapiens OX=9606 GN=STRA6 PE=1 SV=1;sp|Q9BX79-6|STRA6_HUMAN Isoform 6 of Receptor for ret 1 63.5629 0.000144779 70.407 44.25 63.563 1 42.4162 0.00875626 42.416 1 56.079 0.00091391 56.079 1 53.3902 0.00116649 53.39 1 41.7342 0.00932251 41.734 1 70.4073 0.000144779 70.407 1 63.5629 0.00806365 63.563 0.99965 37.4722 0.000292322 64.701 2;3 M GEEDEGMQLLQTKDSMAKGARPGASRGRARW X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX TM(1)AAPQDSLRPGEEDEGM(1)QLLQTKDSM(1)AK TM(63.56)AAPQDSLRPGEEDEGM(63.56)QLLQTKDSM(63.56)AK 27 4 -0.24168 125330000 0 2076900 123260000 NaN 13913000 6561000 67991000 10869000 0 0 0 0 2076900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 13913000 0 0 6561000 0 0 67991000 0 0 10869000 0 0 0 0 0 0 0 0 0 0 0 0 0 2076900 0 1038 1894 615 615 4518 5128;5129;5130;5131 14407;14408;14409;14410;14411;14415;14416 15145;15146;15147;15148;15149;15153;15154 14415 15153 20190902_JH_WT_Ubi_2 8926 14410 15148 20190902_JH_MUT_Ubi_2 7549 14410 15148 20190902_JH_MUT_Ubi_2 7549 sp|Q9BXB4|OSB11_HUMAN 265 sp|Q9BXB4|OSB11_HUMAN sp|Q9BXB4|OSB11_HUMAN sp|Q9BXB4|OSB11_HUMAN Oxysterol-binding protein-related protein 11 OS=Homo sapiens OX=9606 GN=OSBPL11 PE=1 SV=2 0.981737 18.369 0.0310626 44.5 13.991 44.5 0.981737 18.369 0.0310626 44.5 1 M LDQDLLMLKATSMATMNCLNDCFHILQLQHA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP ATSM(0.018)ATM(0.982)NCLNDCFHILQLQHASHQK ATSM(-18.37)ATM(18.37)NCLNDCFHILQLQHASHQK 7 3 -3.4752 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1039 1895 265 265 306 360 1037 1121 1037 1121 20190902_JH_MUT_Ubi_2 15406 1037 1121 20190902_JH_MUT_Ubi_2 15406 1037 1121 20190902_JH_MUT_Ubi_2 15406 sp|Q9BXF6|RFIP5_HUMAN 579 sp|Q9BXF6|RFIP5_HUMAN sp|Q9BXF6|RFIP5_HUMAN sp|Q9BXF6|RFIP5_HUMAN Rab11 family-interacting protein 5 OS=Homo sapiens OX=9606 GN=RAB11FIP5 PE=1 SV=1 1 85.6101 2.45447E-06 89.659 39.423 85.61 1 65.5981 0.00136645 65.753 1 89.6592 2.45447E-06 89.659 1 85.6101 3.40517E-05 85.61 1 M SGSIQPVTQAPQAGQMVDTKRLKDSAVLDQS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;GlyGly (K);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX TVTSGSIQPVTQAPQAGQM(1)VDTKR TVTSGSIQPVTQAPQAGQM(85.61)VDTKR 19 3 0.29393 4346500 4346500 0 0 NaN 0 892990 0 0 0 2129100 916030 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 892990 0 0 0 0 0 0 0 0 0 0 0 2129100 0 0 916030 0 0 0 0 0 0 0 0 1040 1896 579 579 2671;4684 3036;5315 8677;15013;15014;15015 9125;15773;15774;15775;15776 15015 15775 20190902_JH_MUT_Ubi_3 6412 15014 15774 20190902_JH_MUT_Ubi_2 6752 15014 15774 20190902_JH_MUT_Ubi_2 6752 sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN;sp|Q9BXS9-2|S26A6_HUMAN;sp|Q9BXS9-5|S26A6_HUMAN;sp|Q9BXS9-4|S26A6_HUMAN;sp|Q9BXS9-3|S26A6_HUMAN 603;639;620;579;617;638 sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9-5|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN Isoform 7 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9|S26A6_HUMAN Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1;sp|Q9BXS9-2|S26A6_HUMAN Isoform 2 of Solute carri 1 149.337 4.95842E-21 149.34 111.22 149.34 1 147.103 1.32874E-17 147.1 1 139.813 5.46141E-15 139.81 1 149.337 4.95842E-21 149.34 1 M NNVEDCKMMVSSGDKMEDATANGQEDSKAPD;NVEDCKMMQVSSGDKMEDATANGQEDSKAPD X;X;X;X;X;GlyGly (K);Oxidation (M);GlyGly (K);Oxidation (M);Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;GlyGly (K);X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EDATANGQEDSKAPDGSTLK M(149.34)EDATANGQEDSKAPDGSTLK 1 3 1.1589 3977300 3977300 0 0 NaN 0 715340 0 0 1926300 1335600 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 715340 0 0 0 0 0 0 0 0 1926300 0 0 1335600 0 0 0 0 0 0 0 0 0 0 0 1041 1900;1901 603;579 603 2890 3282 9318;9319;9320 9810;9811;9812 9320 9812 20190902_JH_MUT_Ubi_2 5184 9320 9812 20190902_JH_MUT_Ubi_2 5184 9320 9812 20190902_JH_MUT_Ubi_2 5184 sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN 594;630 sp|Q9BXS9-7|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN Isoform 7 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9|S26A6_HUMAN Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1 1 85.3625 0.000738945 85.362 71.322 85.362 1 85.3625 0.000738945 85.362 2 M TSLEDMRSNNVEDCKMMQVSSGDKMEDATAN X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ) XXXXXXXPPPPPPPPPPPPPPPPPXXXXXXX SNNVEDCKM(1)M(1)QVSSGDK SNNVEDCKM(85.36)M(85.36)QVSSGDK 9 3 -0.41761 1537800 0 1537800 0 NaN 0 0 0 1537800 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1537800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1042 1900 594 594 4090 4642;4643 12934 13562 12934 13562 20190902_JH_EV_Ubi_2 3935 12934 13562 20190902_JH_EV_Ubi_2 3935 12934 13562 20190902_JH_EV_Ubi_2 3935 sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN 595;631 sp|Q9BXS9-7|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN sp|Q9BXS9-7|S26A6_HUMAN Isoform 7 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9|S26A6_HUMAN Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1 1 85.3625 0.000738945 85.362 71.322 85.362 0.955664 13.3972 0.0261741 56.851 1 85.3625 0.000738945 85.362 1;2 M SLEDMRSNNVEDCKMMQVSSGDKMEDATANG X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X XXXXXXPPPPPPPPPPPPPPPPPXXXXXXXX SNNVEDCKM(1)M(1)QVSSGDK SNNVEDCKM(85.36)M(85.36)QVSSGDK 10 3 -0.41761 1537800 0 1537800 0 NaN 0 0 0 1537800 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 1537800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1043 1900 595 595 4090 4642;4643 12933;12934 13561;13562 12934 13562 20190902_JH_EV_Ubi_2 3935 12934 13562 20190902_JH_EV_Ubi_2 3935 12934 13562 20190902_JH_EV_Ubi_2 3935 sp|Q9BXS9-5|S26A6_HUMAN;sp|Q9BXS9-4|S26A6_HUMAN;sp|Q9BXS9-3|S26A6_HUMAN 571;609;630 sp|Q9BXS9-5|S26A6_HUMAN sp|Q9BXS9-5|S26A6_HUMAN sp|Q9BXS9-5|S26A6_HUMAN Isoform 5 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9-4|S26A6_HUMAN Isoform 4 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9-3|S26A6_HUMAN Isoform 3 of Solute 1 53.9948 0.0147263 53.995 36.128 53.995 1 47.3013 0.0347087 47.301 1 53.9948 0.0147263 53.995 2 M TSLEDMRSNNVEDCKMMVSSGDKMEDATANG X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X XXXXXXXPPPPPPPPPPPPPPPPXXXXXXXX SNNVEDCKM(1)M(1)VSSGDK SNNVEDCKM(53.99)M(53.99)VSSGDK 9 3 3.3435 2371000 0 2371000 0 NaN 0 0 0 0 2371000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 2371000 0 0 0 0 0 0 0 0 0 0 0 0 0 1044 1901 571 571 4091 4644 12935;12936 13563;13564 12936 13564 20190902_JH_EV_Ubi_3 4047 12936 13564 20190902_JH_EV_Ubi_3 4047 12936 13564 20190902_JH_EV_Ubi_3 4047 sp|Q9BXS9-5|S26A6_HUMAN;sp|Q9BXS9-4|S26A6_HUMAN;sp|Q9BXS9-3|S26A6_HUMAN 572;610;631 sp|Q9BXS9-5|S26A6_HUMAN sp|Q9BXS9-5|S26A6_HUMAN sp|Q9BXS9-5|S26A6_HUMAN Isoform 5 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9-4|S26A6_HUMAN Isoform 4 of Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6;sp|Q9BXS9-3|S26A6_HUMAN Isoform 3 of Solute 1 53.9948 0.0147263 53.995 36.128 53.995 1 47.3013 0.0347087 47.301 1 53.9948 0.0147263 53.995 2 M SLEDMRSNNVEDCKMMVSSGDKMEDATANGQ X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);X;Deamidation (NQ) XXXXXXPPPPPPPPPPPPPPPPXXXXXXXXX SNNVEDCKM(1)M(1)VSSGDK SNNVEDCKM(53.99)M(53.99)VSSGDK 10 3 3.3435 2371000 0 2371000 0 NaN 0 0 0 0 2371000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 2371000 0 0 0 0 0 0 0 0 0 0 0 0 0 1045 1901 572 572 4091 4644 12935;12936 13563;13564 12936 13564 20190902_JH_EV_Ubi_3 4047 12936 13564 20190902_JH_EV_Ubi_3 4047 12936 13564 20190902_JH_EV_Ubi_3 4047 sp|Q9BYD3|RM04_HUMAN 253 sp|Q9BYD3|RM04_HUMAN sp|Q9BYD3|RM04_HUMAN sp|Q9BYD3|RM04_HUMAN 39S ribosomal protein L4, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL4 PE=1 SV=1 1 50.305 0.0240748 50.305 19.4 50.305 1 50.305 0.0240748 50.305 1 M KTFNLIPAVGLNVHSMLKHQTLVLTLPTVAF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX TFNLIPAVGLNVHSM(1)LK TFNLIPAVGLNVHSM(50.3)LK 15 3 -0.62675 1198500 1198500 0 0 NaN 0 0 0 0 0 1198500 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1198500 0 0 0 0 0 0 0 0 0 0 0 1046 1908 253 253 4344 4927 13740 14413 13740 14413 20190902_JH_MUT_Ubi_2 12308 13740 14413 20190902_JH_MUT_Ubi_2 12308 13740 14413 20190902_JH_MUT_Ubi_2 12308 sp|Q9GZN1|ARP6_HUMAN 233 sp|Q9GZN1|ARP6_HUMAN sp|Q9GZN1|ARP6_HUMAN sp|Q9GZN1|ARP6_HUMAN Actin-related protein 6 OS=Homo sapiens OX=9606 GN=ACTR6 PE=1 SV=1 1 42.6176 0.0213879 42.618 6.347 42.618 1 42.6176 0.0213879 42.618 1 M RDMDIAKLKGEENTVMIDYVLPDFSTIKKGF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);GlyGly (K);X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP GEENTVM(1)IDYVLPDFSTIKKGFCK GEENTVM(42.62)IDYVLPDFSTIKKGFCK 7 3 3.3388 488630 488630 0 0 NaN 488630 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 488630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1047 1917 233 233 1426 1624 4541 4772 4541 4772 20190821_JH_EV_Ubi 14106 4541 4772 20190821_JH_EV_Ubi 14106 4541 4772 20190821_JH_EV_Ubi 14106 sp|Q9GZY0|NXF2_HUMAN 610 sp|Q9GZY0|NXF2_HUMAN sp|Q9GZY0|NXF2_HUMAN sp|Q9GZY0|NXF2_HUMAN Nuclear RNA export factor 2 OS=Homo sapiens OX=9606 GN=NXF2 PE=1 SV=1 1 45.8796 0.0279909 45.88 11.876 45.88 1 45.8796 0.0279909 45.88 1 M QDNEWNYTRAGQAFTMLQTEGKIPAEAFKQI X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP AGQAFTM(1)LQTEGKIPAEAFKQIS AGQAFTM(45.88)LQTEGKIPAEAFKQIS 7 3 -1.9201 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1048 1921 610 610 134 152 462 510 462 510 20190902_JH_WT_Ubi_3 7145 462 510 20190902_JH_WT_Ubi_3 7145 462 510 20190902_JH_WT_Ubi_3 7145 sp|Q9GZZ9-2|UBA5_HUMAN;sp|Q9GZZ9|UBA5_HUMAN 202;258 sp|Q9GZZ9-2|UBA5_HUMAN sp|Q9GZZ9-2|UBA5_HUMAN sp|Q9GZZ9-2|UBA5_HUMAN Isoform 2 of Ubiquitin-like modifier-activating enzyme 5 OS=Homo sapiens OX=9606 GN=UBA5;sp|Q9GZZ9|UBA5_HUMAN Ubiquitin-like modifier-activating enzyme 5 OS=Homo sapiens OX=9606 GN=UBA5 PE=1 SV=1 1 73.6723 0.000554271 75.703 44.188 73.672 1 75.7027 0.00245516 75.703 1 73.6723 0.000554271 73.672 1 M TLKREGVCAASLPTTMGVVAGILVQNVLKFL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPXX REGVCAASLPTTM(1)GVVAGILVQNVLK REGVCAASLPTTM(73.67)GVVAGILVQNVLK 13 3 -0.99073 4752800 4752800 0 0 7.4027 4070900 0 0 0 0 0 0 0 0 6.3405 NaN NaN NaN NaN NaN NaN NaN NaN 4070900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1049 1923 202 202 911;3736 1030;4250 2883;11855 3036;12437 11855 12437 20190821_JH_MUT_Ubi 12797 2883 3036 20190821_JH_EV_Ubi 14415 11855 12437 20190821_JH_MUT_Ubi 12797 sp|Q9H0E2-2|TOLIP_HUMAN;sp|Q9H0E2|TOLIP_HUMAN 171;240 sp|Q9H0E2-2|TOLIP_HUMAN sp|Q9H0E2-2|TOLIP_HUMAN sp|Q9H0E2-2|TOLIP_HUMAN Isoform 2 of Toll-interacting protein OS=Homo sapiens OX=9606 GN=TOLLIP;sp|Q9H0E2|TOLIP_HUMAN Toll-interacting protein OS=Homo sapiens OX=9606 GN=TOLLIP PE=1 SV=1 1 64.3772 3.232E-06 96.561 61.387 64.377 1 66.7019 0.00570478 66.702 1 96.5608 3.232E-06 96.561 1 86.7266 2.67628E-05 86.727 1 64.3772 0.00231853 64.377 2 M AQPRCSEEDLKAIQDMFPNMDQEVIRSVLEA X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Deamidation (NQ);X;Oxidation (M);X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPPPPXXXXX CSEEDLKAIQDM(1)FPNM(1)DQEVIR CSEEDLKAIQDM(64.38)FPNM(64.38)DQEVIR 12 3 -0.41905 4878000 0 4878000 0 NaN 0 0 0 0 0 0 1754200 1665800 1458000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1754200 0 0 1665800 0 0 1458000 0 1050 1926 171 171 362 429;430 1201;1202;1203;1204 1288;1289;1290;1291 1204 1291 20190902_JH_WT_Ubi_3 12027 1202 1289 20190902_JH_MUT_Ubi_3 10826 1202 1289 20190902_JH_MUT_Ubi_3 10826 sp|Q9H0E2-2|TOLIP_HUMAN;sp|Q9H0E2|TOLIP_HUMAN 175;244 sp|Q9H0E2-2|TOLIP_HUMAN sp|Q9H0E2-2|TOLIP_HUMAN sp|Q9H0E2-2|TOLIP_HUMAN Isoform 2 of Toll-interacting protein OS=Homo sapiens OX=9606 GN=TOLLIP;sp|Q9H0E2|TOLIP_HUMAN Toll-interacting protein OS=Homo sapiens OX=9606 GN=TOLLIP PE=1 SV=1 1 64.3772 3.232E-06 96.561 61.387 64.377 1 66.7019 0.00570478 66.702 1 96.5608 3.232E-06 96.561 1 86.7266 2.67628E-05 86.727 1 64.3772 0.00231853 64.377 2 M CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGN X;X;X;X;X;X;GlyGly (K);X;X;Deamidation (NQ);X;Oxidation (M);X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX CSEEDLKAIQDM(1)FPNM(1)DQEVIR CSEEDLKAIQDM(64.38)FPNM(64.38)DQEVIR 16 3 -0.41905 4878000 0 4878000 0 NaN 0 0 0 0 0 0 1754200 1665800 1458000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1754200 0 0 1665800 0 0 1458000 0 1051 1926 175 175 362 429;430 1201;1202;1203;1204 1288;1289;1290;1291 1204 1291 20190902_JH_WT_Ubi_3 12027 1202 1289 20190902_JH_MUT_Ubi_3 10826 1202 1289 20190902_JH_MUT_Ubi_3 10826 sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN;sp|Q9H0E3|SP130_HUMAN 494;964;929 sp|Q9H0E3-2|SP130_HUMAN sp|Q9H0E3-2|SP130_HUMAN sp|Q9H0E3-2|SP130_HUMAN Isoform 2 of Histone deacetylase complex subunit SAP130 OS=Homo sapiens OX=9606 GN=SAP130;sp|Q9H0E3-3|SP130_HUMAN Isoform 3 of Histone deacetylase complex subunit SAP130 OS=Homo sapiens OX=9606 GN=SAP130;sp|Q9H0E3|SP130_HUMAN Histon 1 69.9792 0.0173412 69.979 15.329 69.979 1 57.1487 0.0361794 57.149 1 69.9792 0.0173412 69.979 1 M FQRYSDVRVKEEKKAMLQEIANQKGVSCRAQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;Deamidation (NQ);Deamidation (NQ);GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX KAM(1)LQEIANQK KAM(69.98)LQEIANQK 3 3 4.4163 19749000 19749000 0 0 NaN 0 0 0 0 0 16918000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16918000 0 0 0 0 0 0 0 0 0 0 0 1052 1927 494 494 2318 2636;2637 7623;7624 8020;8021 7624 8021 20190902_JH_WT_Ubi_3 7846 7624 8021 20190902_JH_WT_Ubi_3 7846 7624 8021 20190902_JH_WT_Ubi_3 7846 sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN 233;703 sp|Q9H0E3-2|SP130_HUMAN sp|Q9H0E3-2|SP130_HUMAN sp|Q9H0E3-2|SP130_HUMAN Isoform 2 of Histone deacetylase complex subunit SAP130 OS=Homo sapiens OX=9606 GN=SAP130;sp|Q9H0E3-3|SP130_HUMAN Isoform 3 of Histone deacetylase complex subunit SAP130 OS=Homo sapiens OX=9606 GN=SAP130 1 49.1205 0.028242 49.12 27.571 49.12 1 49.1205 0.028242 49.12 1 M PPQPPDVASPRVESSMRSTSGSPRPAGAKPK X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX TLIPPQPPDVASPRVESSM(1)R TLIPPQPPDVASPRVESSM(49.12)R 19 2 -2.2305 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1053 1927 233 233 4475 5074 14206 14911 14206 14911 20190902_JH_WT_Ubi_2 13782 14206 14911 20190902_JH_WT_Ubi_2 13782 14206 14911 20190902_JH_WT_Ubi_2 13782 sp|Q9H0X4-2|F234A_HUMAN;sp|Q9H0X4|F234A_HUMAN 1;1 sp|Q9H0X4-2|F234A_HUMAN sp|Q9H0X4-2|F234A_HUMAN sp|Q9H0X4-2|F234A_HUMAN Isoform 2 of Protein FAM234A OS=Homo sapiens OX=9606 GN=FAM234A;sp|Q9H0X4|F234A_HUMAN Protein FAM234A OS=Homo sapiens OX=9606 GN=FAM234A PE=1 SV=1 1 51.0302 0.0157303 51.03 24.739 51.03 1 47.6216 0.0190985 47.622 1 51.0302 0.0157303 51.03 1 M _______________MLDHKDLEAEIHPLKN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)LDHKDLEAEIHPLK M(51.03)LDHKDLEAEIHPLK 1 4 0.088053 14382000 14382000 0 0 NaN 0 0 0 0 0 0 0 7384000 6997700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7384000 0 0 6997700 0 0 1054 1931 1 1 2934 3335 9461;9462 9959;9960 9462 9960 20190902_JH_WT_Ubi_3 9066 9462 9960 20190902_JH_WT_Ubi_3 9066 9462 9960 20190902_JH_WT_Ubi_3 9066 sp|Q9H1Z4-2|WDR13_HUMAN;sp|Q9H1Z4|WDR13_HUMAN 196;288 sp|Q9H1Z4-2|WDR13_HUMAN sp|Q9H1Z4-2|WDR13_HUMAN sp|Q9H1Z4-2|WDR13_HUMAN Isoform 2 of WD repeat-containing protein 13 OS=Homo sapiens OX=9606 GN=WDR13;sp|Q9H1Z4|WDR13_HUMAN WD repeat-containing protein 13 OS=Homo sapiens OX=9606 GN=WDR13 PE=1 SV=2 1 92.1118 0.00519804 92.112 51.496 92.112 1 92.1118 0.00519804 92.112 1 53.6003 0.0328166 53.6 1 92.1118 0.00519804 92.112 1 M NNLTVVGNAKHNVHVMNISTGKKVKGGSSKL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX HNVHVM(1)NISTGK HNVHVM(92.11)NISTGK 6 3 -2.2326 5998600 5998600 0 0 NaN 714740 0 0 0 571480 0 0 4712400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 714740 0 0 0 0 0 0 0 0 0 0 0 571480 0 0 0 0 0 0 0 0 4712400 0 0 0 0 0 1055 1934 196 196 1961 2233 6377;6378;6379 6711;6712;6713 6379 6713 20190902_JH_WT_Ubi_2 4138 6379 6713 20190902_JH_WT_Ubi_2 4138 6379 6713 20190902_JH_WT_Ubi_2 4138 sp|Q9H223|EHD4_HUMAN 474 sp|Q9H223|EHD4_HUMAN sp|Q9H223|EHD4_HUMAN sp|Q9H223|EHD4_HUMAN EH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=EHD4 PE=1 SV=1 1 76.2401 0.0154845 76.24 31.272 76.24 1 76.2401 0.0154845 76.24 M SPINGKISGVNAKKEMVTSKLPNSVLGKIWK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX EM(1)VTSKLPNSVLGK EM(76.24)VTSKLPNSVLGK 2 3 0.084237 1627000 1627000 0 0 NaN 0 0 0 0 1627000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1627000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1056 1936 474 474 1038 1168 3288 3456 3288 3456 20190902_JH_EV_Ubi_3 7080 3288 3456 20190902_JH_EV_Ubi_3 7080 3288 3456 20190902_JH_EV_Ubi_3 7080 sp|Q9H2E6|SEM6A_HUMAN;sp|Q9H2E6-2|SEM6A_HUMAN 488;488 sp|Q9H2E6|SEM6A_HUMAN sp|Q9H2E6|SEM6A_HUMAN sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens OX=9606 GN=SEMA6A PE=1 SV=2;sp|Q9H2E6-2|SEM6A_HUMAN Isoform 2 of Semaphorin-6A OS=Homo sapiens OX=9606 GN=SEMA6A 1 51.0662 0.0284382 51.066 15.158 51.066 1 51.0662 0.0284382 51.066 2 M NSEKCSYDGVEDKRIMGMQLDRASSSLYVAF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPXXXXXXXXX RIM(1)GM(1)QLDR RIM(51.07)GM(51.07)QLDR 3 3 2.1183 1168900 0 1168900 0 NaN 0 0 1168900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1168900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1057 1938 488 488 3757 4271 11908 12490 11908 12490 20190821_JH_WT_Ubi 3828 11908 12490 20190821_JH_WT_Ubi 3828 11908 12490 20190821_JH_WT_Ubi 3828 sp|Q9H2E6|SEM6A_HUMAN;sp|Q9H2E6-2|SEM6A_HUMAN 490;490 sp|Q9H2E6|SEM6A_HUMAN sp|Q9H2E6|SEM6A_HUMAN sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens OX=9606 GN=SEMA6A PE=1 SV=2;sp|Q9H2E6-2|SEM6A_HUMAN Isoform 2 of Semaphorin-6A OS=Homo sapiens OX=9606 GN=SEMA6A 1 51.0662 0.0284382 51.066 15.158 51.066 1 51.0662 0.0284382 51.066 2 M EKCSYDGVEDKRIMGMQLDRASSSLYVAFST X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPXXXXXXXXXXX RIM(1)GM(1)QLDR RIM(51.07)GM(51.07)QLDR 5 3 2.1183 1168900 0 1168900 0 NaN 0 0 1168900 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 1168900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1058 1938 490 490 3757 4271 11908 12490 11908 12490 20190821_JH_WT_Ubi 3828 11908 12490 20190821_JH_WT_Ubi 3828 11908 12490 20190821_JH_WT_Ubi 3828 sp|Q9H2P9-3|DPH5_HUMAN;sp|Q9H2P9-2|DPH5_HUMAN;sp|Q9H2P9-6|DPH5_HUMAN;sp|Q9H2P9-4|DPH5_HUMAN;sp|Q9H2P9|DPH5_HUMAN;sp|Q9H2P9-5|DPH5_HUMAN 137;137;188;188;188;200 sp|Q9H2P9-3|DPH5_HUMAN sp|Q9H2P9-3|DPH5_HUMAN sp|Q9H2P9-3|DPH5_HUMAN Isoform 3 of Diphthine methyl ester synthase OS=Homo sapiens OX=9606 GN=DPH5;sp|Q9H2P9-2|DPH5_HUMAN Isoform 2 of Diphthine methyl ester synthase OS=Homo sapiens OX=9606 GN=DPH5;sp|Q9H2P9-6|DPH5_HUMAN Isoform 6 of Diphthine methyl est 1 112.915 3.35024E-06 112.91 67.374 112.91 1 112.915 3.35024E-06 112.91 1 M ENLIKGRKIYEPPRYMSVNQAAQQLLEIVQN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP YM(1)SVNQAAQQLLEIVQNQR YM(112.91)SVNQAAQQLLEIVQNQR 2 3 0.79924 875710 875710 0 0 NaN 875710 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 875710 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1059 1939 137 137 5178 5894 16719 17576 16719 17576 20190821_JH_EV_Ubi 13934 16719 17576 20190821_JH_EV_Ubi 13934 16719 17576 20190821_JH_EV_Ubi 13934 sp|Q9H3M7-2|TXNIP_HUMAN;sp|Q9H3M7|TXNIP_HUMAN 102;157 sp|Q9H3M7-2|TXNIP_HUMAN sp|Q9H3M7-2|TXNIP_HUMAN sp|Q9H3M7-2|TXNIP_HUMAN Isoform 2 of Thioredoxin-interacting protein OS=Homo sapiens OX=9606 GN=TXNIP;sp|Q9H3M7|TXNIP_HUMAN Thioredoxin-interacting protein OS=Homo sapiens OX=9606 GN=TXNIP PE=1 SV=1 1 124.943 7.01678E-18 146.97 115.46 124.94 1 52.4643 0.00852803 52.464 1 93.0622 3.93424E-06 93.062 1 41.6892 0.026892 41.689 1 127.366 1.07076E-11 127.37 1 146.975 7.01678E-18 146.97 1 93.2551 3.8284E-06 93.255 1 124.943 1.40429E-11 124.94 1 M NFEVVDLVDVNTPDLMAPVSAKKEKKVSCMF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPXXXXXXXX NFEVVDLVDVNTPDLM(1)APVSAKK NFEVVDLVDVNTPDLM(124.94)APVSAKK 16 3 0.36692 20523000 20523000 0 0 24.796 0 3155100 5803400 0 571580 2169000 2524100 3123100 3176900 0 NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 3155100 0 0 5803400 0 0 0 0 0 571580 0 0 2169000 0 0 2524100 0 0 3123100 0 0 3176900 0 0 1060 1945 102 102 3049 3485 9826;9827;9828;9829;9830;9831;9832 10350;10351;10352;10353;10354;10355;10356 9832 10356 20190902_JH_WT_Ubi_3 13515 9829 10353 20190902_JH_MUT_Ubi_3 12227 9829 10353 20190902_JH_MUT_Ubi_3 12227 sp|Q9H444|CHM4B_HUMAN 132 sp|Q9H444|CHM4B_HUMAN sp|Q9H444|CHM4B_HUMAN sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens OX=9606 GN=CHMP4B PE=1 SV=1 1 89.0429 4.81659E-06 89.043 51.931 89.043 1 89.0429 4.81659E-06 89.043 1 M KAAHDNMDIDKVDELMQDIADQQELAEEIST X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP VDELM(1)QDIADQQELAEEISTAISK VDELM(89.04)QDIADQQELAEEISTAISK 5 3 1.3301 1331300 1331300 0 0 NaN 0 0 1331300 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1331300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1061 1950 132 132 4736 5374 15187 15955 15187 15955 20190821_JH_WT_Ubi 15598 15187 15955 20190821_JH_WT_Ubi 15598 15187 15955 20190821_JH_WT_Ubi 15598 sp|Q9H4G0|E41L1_HUMAN 63 sp|Q9H4G0|E41L1_HUMAN sp|Q9H4G0|E41L1_HUMAN sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens OX=9606 GN=EPB41L1 PE=1 SV=2 1 107.246 1.16641E-15 138.46 109.32 107.25 1 138.455 1.16641E-15 138.46 1 107.246 5.1627E-07 107.25 1 M HPSQQDTRPAEQSLDMEEKDYSEADGLSERT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX PAEQSLDM(1)EEKDYSEADGLSER PAEQSLDM(107.25)EEKDYSEADGLSER 8 3 0.20224 2006100 2006100 0 0 1.2318 0 0 0 0 855540 0 1150600 0 0 NaN 0 NaN NaN NaN NaN 2.0787 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 855540 0 0 0 0 0 1150600 0 0 0 0 0 0 0 0 1062 1953 63 63 3287 3755 10557;10558 11107;11108 10558 11108 20190902_JH_MUT_Ubi_3 7397 10557 11107 20190902_JH_EV_Ubi_3 7368 10557 11107 20190902_JH_EV_Ubi_3 7368 sp|Q9H4L5-8|OSBL3_HUMAN;sp|Q9H4L5-7|OSBL3_HUMAN;sp|Q9H4L5-6|OSBL3_HUMAN;sp|Q9H4L5-5|OSBL3_HUMAN;sp|Q9H4L5-4|OSBL3_HUMAN;sp|Q9H4L5-3|OSBL3_HUMAN;sp|Q9H4L5-2|OSBL3_HUMAN;sp|Q9H4L5|OSBL3_HUMAN 45;45;45;45;45;45;45;45 sp|Q9H4L5-8|OSBL3_HUMAN sp|Q9H4L5-8|OSBL3_HUMAN sp|Q9H4L5-8|OSBL3_HUMAN Isoform 2d of Oxysterol-binding protein-related protein 3 OS=Homo sapiens OX=9606 GN=OSBPL3;sp|Q9H4L5-7|OSBL3_HUMAN Isoform 2c of Oxysterol-binding protein-related protein 3 OS=Homo sapiens OX=9606 GN=OSBPL3;sp|Q9H4L5-6|OSBL3_HUMAN 1 90.4977 0.000502467 90.498 66.088 90.498 1 78.2492 0.0018428 78.249 1 90.4977 0.000502467 90.498 1 M SRQDSWEVVEGLRGEMNYTQEPPVQKGFLLK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP GEM(1)NYTQEPPVQKGFLLK GEM(90.5)NYTQEPPVQKGFLLK 3 3 -0.42899 9454100 9454100 0 0 NaN 0 0 0 0 0 0 0 4988300 4465800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4988300 0 0 4465800 0 0 1063 1955 45 45 1438 1638 4570;4571 4802;4803 4571 4803 20190902_JH_WT_Ubi_3 9755 4571 4803 20190902_JH_WT_Ubi_3 9755 4571 4803 20190902_JH_WT_Ubi_3 9755 sp|Q9H4M9|EHD1_HUMAN 137 sp|Q9H4M9|EHD1_HUMAN sp|Q9H4M9|EHD1_HUMAN sp|Q9H4M9|EHD1_HUMAN EH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=EHD1 PE=1 SV=2 1 104.26 1.1015E-10 104.26 71.185 104.26 1 62.4045 0.00066182 62.404 1 92.3628 4.56442E-07 92.363 1 104.26 1.1015E-10 104.26 1 M FRKLNAFGNAFLNRFMCAQLPNPVLDSISII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP FM(1)CAQLPNPVLDSISIIDTPGILSGEKQR FM(104.26)CAQLPNPVLDSISIIDTPGILSGEKQR 2 3 1.1689 4739000 4739000 0 0 4.5509 0 0 3061500 0 0 471120 0 0 1206400 NaN 0 NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3061500 0 0 0 0 0 0 0 0 471120 0 0 0 0 0 0 0 0 1206400 0 0 1064 1956 137 137 1261 1428 4006;4007;4008 4214;4215;4216 4008 4216 20190902_JH_WT_Ubi_3 15321 4008 4216 20190902_JH_WT_Ubi_3 15321 4008 4216 20190902_JH_WT_Ubi_3 15321 sp|Q9H6X2-5|ANTR1_HUMAN;sp|Q9H6X2|ANTR1_HUMAN;sp|Q9H6X2-3|ANTR1_HUMAN;sp|Q9H6X2-4|ANTR1_HUMAN;sp|Q9H6X2-6|ANTR1_HUMAN;sp|Q9H6X2-2|ANTR1_HUMAN 120;120;120;120;120;120 sp|Q9H6X2-5|ANTR1_HUMAN sp|Q9H6X2-5|ANTR1_HUMAN sp|Q9H6X2-5|ANTR1_HUMAN Isoform 5 of Anthrax toxin receptor 1 OS=Homo sapiens OX=9606 GN=ANTXR1;sp|Q9H6X2|ANTR1_HUMAN Anthrax toxin receptor 1 OS=Homo sapiens OX=9606 GN=ANTXR1 PE=1 SV=2;sp|Q9H6X2-3|ANTR1_HUMAN Isoform 3 of Anthrax toxin receptor 1 OS=Homo 1 49.1058 0.0187186 49.106 18.895 49.106 1 49.1058 0.0187186 49.106 1 M GLEELQKVLPGGDTYMHEGFERASEQIYYEN X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX EQIRQGLEELQKVLPGGDTYM(1)HEGFER EQIRQGLEELQKVLPGGDTYM(49.11)HEGFER 21 3 -3.0366 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1065 1961 120 120 1075 1213 3432 3609 3432 3609 20190902_JH_MUT_Ubi_3 9486 3432 3609 20190902_JH_MUT_Ubi_3 9486 3432 3609 20190902_JH_MUT_Ubi_3 9486 sp|Q9H6X2-5|ANTR1_HUMAN;sp|Q9H6X2|ANTR1_HUMAN 420;420 sp|Q9H6X2-5|ANTR1_HUMAN sp|Q9H6X2-5|ANTR1_HUMAN sp|Q9H6X2-5|ANTR1_HUMAN Isoform 5 of Anthrax toxin receptor 1 OS=Homo sapiens OX=9606 GN=ANTXR1;sp|Q9H6X2|ANTR1_HUMAN Anthrax toxin receptor 1 OS=Homo sapiens OX=9606 GN=ANTXR1 PE=1 SV=2 1 90.7588 0.00311192 90.759 36.813 90.759 1 63.2122 0.0250958 63.212 1 80.5075 0.00725408 80.507 1 78.9855 0.00831788 78.985 1 90.7588 0.00311192 90.759 1 M EEGAKLEKAKNARVKMPEQEYEFPEPRNLNN X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPXXXX VKM(1)PEQEYEFPEPR VKM(90.76)PEQEYEFPEPR 3 3 1.3183 4007600 4007600 0 0 NaN 0 0 0 0 0 1082400 992910 0 1932300 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1082400 0 0 992910 0 0 0 0 0 1932300 0 0 1066 1961 420 420 4877 5537 15673;15674;15675;15676 16472;16473;16474;16475 15676 16475 20190902_JH_WT_Ubi_3 8084 15676 16475 20190902_JH_WT_Ubi_3 8084 15676 16475 20190902_JH_WT_Ubi_3 8084 sp|Q9H7B2|RPF2_HUMAN 217 sp|Q9H7B2|RPF2_HUMAN sp|Q9H7B2|RPF2_HUMAN sp|Q9H7B2|RPF2_HUMAN Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2 1 53.9462 0.00470886 76.588 11.79 53.946 1 76.588 0.00470886 76.588 1 60.4007 0.0176571 60.401 1 53.9462 0.0258574 53.946 1 M LKKSGCRTPRIELEEMGPSLDLVLRRTHLAS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPXXXXXX IELEEM(1)GPSLDLVLR IELEEM(53.95)GPSLDLVLR 6 3 0.55881 19572000 19572000 0 0 NaN 0 0 11753000 0 0 3803000 0 0 4016000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 11753000 0 0 0 0 0 0 0 0 3803000 0 0 0 0 0 0 0 0 4016000 0 0 1067 1965 217 217 2108 2406 6995;6996;6997 7366;7367;7368 6997 7368 20190902_JH_WT_Ubi_3 11175 6996 7367 20190821_JH_WT_Ubi 9721 6996 7367 20190821_JH_WT_Ubi 9721 sp|Q9H7F0|AT133_HUMAN 102 sp|Q9H7F0|AT133_HUMAN sp|Q9H7F0|AT133_HUMAN sp|Q9H7F0|AT133_HUMAN Probable cation-transporting ATPase 13A3 OS=Homo sapiens OX=9606 GN=ATP13A3 PE=1 SV=4 1 56.7737 0.00578406 69.594 46.032 56.774 1 69.5939 0.00578406 69.594 1 62.077 0.0114827 62.077 1 48.3913 0.0353863 48.391 1 56.7737 0.019205 56.774 1 M RVLSLETYPVSSPKSMSNKLSNGHAVCLIEN X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX VLSLETYPVSSPKSM(1)SNK VLSLETYPVSSPKSM(56.77)SNK 15 3 -0.87221 10326000 10326000 0 0 NaN 1880800 0 0 4528500 2153100 0 1763700 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1880800 0 0 0 0 0 0 0 0 4528500 0 0 2153100 0 0 0 0 0 1763700 0 0 0 0 0 0 0 0 1068 1966 102 102 4931 5600 15853;15854;15855;15856 16659;16660;16661;16662 15856 16662 20190902_JH_MUT_Ubi_3 7452 15853 16659 20190821_JH_EV_Ubi 7221 15853 16659 20190821_JH_EV_Ubi 7221 sp|Q9H7M9|VISTA_HUMAN 233 sp|Q9H7M9|VISTA_HUMAN sp|Q9H7M9|VISTA_HUMAN sp|Q9H7M9|VISTA_HUMAN V-type immunoglobulin domain-containing suppressor of T-cell activation OS=Homo sapiens OX=9606 GN=VSIR PE=1 SV=3 1 169.799 9.48812E-40 169.8 117.28 169.8 1 111.489 1.34442E-15 111.49 1 144.73 7.43752E-26 144.73 1 86.6408 5.72992E-06 86.641 1 120.378 3.21161E-16 120.38 1 97.3877 6.03568E-07 97.388 1 109.403 3.7558E-11 109.4 1 55.0493 7.40478E-05 77.802 1 124.846 1.74514E-39 162.35 1 169.799 9.48812E-40 169.8 1 M QRQAASNRRAQELVRMDSNIQGIENPGFEAS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;Deamidation (NQ);X;X;X;Deamidation (NQ);X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DSNIQGIENPGFEASPPAQGIPEAKVR M(169.8)DSNIQGIENPGFEASPPAQGIPEAKVR 1 3 -0.60079 136770000 136770000 0 0 1.6307 16116000 9352200 21262000 7568100 0 17339000 12251000 22824000 16678000 2.5142 0.93205 1.0478 3.3155 0 2.4502 1.5198 1.5794 1.2908 16116000 0 0 9352200 0 0 21262000 0 0 7568100 0 0 0 0 0 17339000 0 0 12251000 0 0 22824000 0 0 16678000 0 0 1069 1967 233 233 2887 3276;3278 9292;9293;9294;9295;9296;9297;9298;9299;9309;9310;9311;9312 9778;9779;9780;9781;9782;9783;9784;9785;9786;9800;9801;9802;9803;9804 9312 9804 20190902_JH_WT_Ubi_3 11009 9312 9804 20190902_JH_WT_Ubi_3 11009 9312 9804 20190902_JH_WT_Ubi_3 11009 sp|Q9H7M9|VISTA_HUMAN 164 sp|Q9H7M9|VISTA_HUMAN sp|Q9H7M9|VISTA_HUMAN sp|Q9H7M9|VISTA_HUMAN V-type immunoglobulin domain-containing suppressor of T-cell activation OS=Homo sapiens OX=9606 GN=VSIR PE=1 SV=3 1 112.437 0.000460922 112.44 45.842 112.44 1 112.437 0.000460922 112.44 1 M VEIRHHHSEHRVHGAMELQVQTGKDAPSNCV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPXXXXXXX VHGAM(1)ELQVQTGK VHGAM(112.44)ELQVQTGK 5 3 -1.9806 2866000 2866000 0 0 NaN 0 0 0 0 0 0 0 0 2866000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2866000 0 0 1070 1967 164 164 4844 5498 15535 16318 15535 16318 20190902_JH_WT_Ubi_3 5513 15535 16318 20190902_JH_WT_Ubi_3 5513 15535 16318 20190902_JH_WT_Ubi_3 5513 sp|Q9H832-2|UBE2Z_HUMAN;sp|Q9H832|UBE2Z_HUMAN 148;256 sp|Q9H832-2|UBE2Z_HUMAN sp|Q9H832-2|UBE2Z_HUMAN sp|Q9H832-2|UBE2Z_HUMAN Isoform 2 of Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens OX=9606 GN=UBE2Z;sp|Q9H832|UBE2Z_HUMAN Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens OX=9606 GN=UBE2Z PE=1 SV=2 1 77.3241 3.04265E-05 107.63 78.999 77.324 1 52.1123 0.01209 52.112 1 41.4817 0.0254957 41.482 1 107.635 3.04265E-05 107.63 1 92.8004 0.00019561 92.8 1 54.0732 0.0107619 54.073 1 77.3241 0.00091572 77.324 2 M NECIRHETIRVAVCDMMEGKCPCPEPLRGVM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPXXX VAVCDM(1)M(1)EGKCPCPEPLR VAVCDM(77.32)M(77.32)EGKCPCPEPLR 6 3 -0.87267 19063000 0 19063000 0 13.857 0 799090 3639600 0 0 2432300 1748100 5493300 4951000 NaN NaN 2.6456 NaN NaN NaN NaN NaN NaN 0 0 0 0 799090 0 0 3639600 0 0 0 0 0 0 0 0 2432300 0 0 1748100 0 0 5493300 0 0 4951000 0 1071 1969 148 148 4717 5352 15138;15139;15140;15141;15142;15143 15905;15906;15907;15908;15909;15910;15911 15143 15911 20190902_JH_WT_Ubi_3 7208 15139 15906 20190902_JH_MUT_Ubi_2 6345 15139 15906 20190902_JH_MUT_Ubi_2 6345 sp|Q9H832-2|UBE2Z_HUMAN;sp|Q9H832|UBE2Z_HUMAN 149;257 sp|Q9H832-2|UBE2Z_HUMAN sp|Q9H832-2|UBE2Z_HUMAN sp|Q9H832-2|UBE2Z_HUMAN Isoform 2 of Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens OX=9606 GN=UBE2Z;sp|Q9H832|UBE2Z_HUMAN Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens OX=9606 GN=UBE2Z PE=1 SV=2 1 77.3241 3.04265E-05 107.63 78.999 77.324 1 52.1123 0.01209 52.112 1 41.4817 0.0254957 41.482 1 107.635 3.04265E-05 107.63 1 92.8004 0.00019561 92.8 1 54.0732 0.0107619 54.073 1 77.3241 0.00091572 77.324 2 M ECIRHETIRVAVCDMMEGKCPCPEPLRGVME X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPXXXX VAVCDM(1)M(1)EGKCPCPEPLR VAVCDM(77.32)M(77.32)EGKCPCPEPLR 7 3 -0.87267 19063000 0 19063000 0 13.857 0 799090 3639600 0 0 2432300 1748100 5493300 4951000 NaN NaN 2.6456 NaN NaN NaN NaN NaN NaN 0 0 0 0 799090 0 0 3639600 0 0 0 0 0 0 0 0 2432300 0 0 1748100 0 0 5493300 0 0 4951000 0 1072 1969 149 149 4717 5352 15138;15139;15140;15141;15142;15143 15905;15906;15907;15908;15909;15910;15911 15143 15911 20190902_JH_WT_Ubi_3 7208 15139 15906 20190902_JH_MUT_Ubi_2 6345 15139 15906 20190902_JH_MUT_Ubi_2 6345 sp|Q9H9B1-2|EHMT1_HUMAN 47 sp|Q9H9B1-2|EHMT1_HUMAN sp|Q9H9B1-2|EHMT1_HUMAN sp|Q9H9B1-2|EHMT1_HUMAN Isoform 2 of Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens OX=9606 GN=EHMT1 0.952237 15.3291 0.0286335 45.879 14.282 45.879 0.952237 15.3291 0.0286335 45.879 1 M RPMGLVKTAMPAVMQMLQSTLRTAQGSTPRM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPXXXXXXXXX TAMPAVM(0.047)QM(0.952)LQSTLR TAM(-36.05)PAVM(-15.33)QM(15.33)LQSTLR 9 2 3.0917 645530 645530 0 0 NaN 0 645530 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 645530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1073 1973 47 47 4259 4834 13477 14137 13477 14137 20190821_JH_MUT_Ubi 8381 13477 14137 20190821_JH_MUT_Ubi 8381 13477 14137 20190821_JH_MUT_Ubi 8381 sp|Q9H9Q2-2|CSN7B_HUMAN;sp|Q9H9Q2|CSN7B_HUMAN 124;231 sp|Q9H9Q2-2|CSN7B_HUMAN sp|Q9H9Q2-2|CSN7B_HUMAN sp|Q9H9Q2-2|CSN7B_HUMAN Isoform 2 of COP9 signalosome complex subunit 7b OS=Homo sapiens OX=9606 GN=COPS7B;sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b OS=Homo sapiens OX=9606 GN=COPS7B PE=1 SV=1 1 120.92 5.52493E-18 148.06 76.366 120.92 1 148.063 5.52493E-18 148.06 1 55.5746 0.016136 55.575 1 95.9538 0.00156558 95.954 1 83.4044 0.000492531 83.404 1 136.613 2.37273E-13 136.61 1 120.92 2.89964E-06 120.92 1 M IKKTLKATASSSAQEMEQQLAERECPPHAEQ X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX TLKATASSSAQEM(1)EQQLAER TLKATASSSAQEM(120.92)EQQLAER 13 3 0.31252 4271900 4271900 0 0 NaN 827260 728680 0 0 634100 1545900 535980 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 827260 0 0 728680 0 0 0 0 0 0 0 0 634100 0 0 1545900 0 0 535980 0 0 0 0 0 0 0 0 1074 1975 124 124 4477 5076 14208;14209;14210;14211;14212;14213;14214 14913;14914;14915;14916;14917;14918;14919 14214 14919 20190902_JH_MUT_Ubi_3 5824 14208 14913 20190821_JH_EV_Ubi 5257 14208 14913 20190821_JH_EV_Ubi 5257 sp|Q9HAV4|XPO5_HUMAN 643 sp|Q9HAV4|XPO5_HUMAN sp|Q9HAV4|XPO5_HUMAN sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens OX=9606 GN=XPO5 PE=1 SV=1 1 55.2914 0.0230401 55.291 13.67 55.291 1 55.2914 0.0230401 55.291 1 M NHVKQLLSNELLLTQMEKCALMEALVLISNQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPXXXXXXXXXXXXX QLLSNELLLTQM(1)EK QLLSNELLLTQM(55.29)EK 12 3 1.2217 1095900 1095900 0 0 NaN 0 0 0 0 0 0 0 0 1095900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1095900 0 0 1075 1977 643 643 3660 4169 11709 12288 11709 12288 20190902_JH_WT_Ubi_3 14166 11709 12288 20190902_JH_WT_Ubi_3 14166 11709 12288 20190902_JH_WT_Ubi_3 14166 sp|Q9HC07-2|TM165_HUMAN;sp|Q9HC07|TM165_HUMAN 118;181 sp|Q9HC07-2|TM165_HUMAN sp|Q9HC07-2|TM165_HUMAN sp|Q9HC07-2|TM165_HUMAN Isoform 2 of Transmembrane protein 165 OS=Homo sapiens OX=9606 GN=TMEM165;sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens OX=9606 GN=TMEM165 PE=1 SV=1 1 64.3311 1.66934E-86 232.73 177.07 64.331 1 232.731 1.66934E-86 232.73 1 182.285 1.46592E-31 182.28 1 211.258 1.30857E-59 211.26 1 64.3311 0.00495253 64.331 1 M LFAIFGIRMLREGLKMSPDEGQEELEEVQAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)SPDEGQEELEEVQAELKK M(64.33)SPDEGQEELEEVQAELKK 1 3 -0.14096 20978000 20978000 0 0 NaN 7798100 5614000 0 5475700 0 0 0 2090000 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 7798100 0 0 5614000 0 0 0 0 0 5475700 0 0 0 0 0 0 0 0 0 0 0 2090000 0 0 0 0 0 1076 1984 118 118 2970 3386 9575;9576;9577;9578 10078;10079;10080;10081 9578 10081 20190902_JH_WT_Ubi_2 11362 9575 10078 20190821_JH_EV_Ubi 9495 9575 10078 20190821_JH_EV_Ubi 9495 sp|Q9HCL3|ZFP14_HUMAN 35 sp|Q9HCL3|ZFP14_HUMAN sp|Q9HCL3|ZFP14_HUMAN sp|Q9HCL3|ZFP14_HUMAN Zinc finger protein 14 homolog OS=Homo sapiens OX=9606 GN=ZFP14 PE=2 SV=2 1 44.2378 0.0308122 44.238 9.8013 44.238 1 44.2378 0.0308122 44.238 1 M WEFLDPAQRDLYRDVMWENYSNFISLGPSIS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP DLYRDVM(1)WENYSNFISLGPSISK DLYRDVM(44.24)WENYSNFISLGPSISK 7 3 -0.36443 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1077 1991 35 35 613 703 1933 2051 1933 2051 20190902_JH_MUT_Ubi_3 10675 1933 2051 20190902_JH_MUT_Ubi_3 10675 1933 2051 20190902_JH_MUT_Ubi_3 10675 sp|Q9NNZ3|DNJC4_HUMAN 186 sp|Q9NNZ3|DNJC4_HUMAN sp|Q9NNZ3|DNJC4_HUMAN sp|Q9NNZ3|DNJC4_HUMAN DnaJ homolog subfamily C member 4 OS=Homo sapiens OX=9606 GN=DNAJC4 PE=1 SV=1 0.827106 6.73761 0.0322887 52.391 6.7376 52.391 0.827106 6.73761 0.0322887 52.391 1 M HYIAFRKVKQMHLNFMDEKDRIITAFYNEAR X;X;X;X;X;X;X;X;GlyGly (K);Deamidation (NQ);X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPXXXXXXXXXX VKQM(0.173)HLNFM(0.827)DEKDR VKQM(-6.74)HLNFM(6.74)DEKDR 9 2 -1.7261 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1078 1997 186 186 4880 5540 15683 16482 15683 16482 20190902_JH_WT_Ubi_3 9137 15683 16482 20190902_JH_WT_Ubi_3 9137 15683 16482 20190902_JH_WT_Ubi_3 9137 sp|Q9NQ84|GPC5C_HUMAN;sp|Q9NQ84-2|GPC5C_HUMAN 336;348 sp|Q9NQ84|GPC5C_HUMAN sp|Q9NQ84|GPC5C_HUMAN sp|Q9NQ84|GPC5C_HUMAN G-protein coupled receptor family C group 5 member C OS=Homo sapiens OX=9606 GN=GPRC5C PE=1 SV=2;sp|Q9NQ84-2|GPC5C_HUMAN Isoform 2 of G-protein coupled receptor family C group 5 member C OS=Homo sapiens OX=9606 GN=GPRC5C 1 94.9584 1.62097E-18 152.13 112.22 94.958 1 149.422 2.25309E-18 149.42 1 111.57 1.2221E-06 111.57 1 152.134 1.62097E-18 152.13 1 86.5733 0.000112429 86.573 1 96.8047 3.77325E-05 96.805 1 136.326 1.13373E-13 136.33 1 85.51 0.000151573 85.51 1 94.9584 4.73765E-05 94.958 1;2 M GVGYETILKEQKGQSMFVENKAFSMDEPVAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP GQSM(1)FVENKAFSM(1)DEPVAAK GQSM(94.96)FVENKAFSM(94.96)DEPVAAK 4 3 0.92241 36556000 3887900 32668000 0 NaN 5363000 2416700 0 7921300 7076300 4398200 3491400 2126000 3763100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 5363000 0 816400 1600300 0 0 0 0 1001700 6919600 0 0 7076300 0 897930 3500300 0 1171800 2319600 0 0 2126000 0 0 3763100 0 1079 2004 336 336 1672 1904;1905 5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344;5345 5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626 5341 5622 20190902_JH_WT_Ubi_3 8413 5335 5616 20190902_JH_EV_Ubi_2 7249 5335 5616 20190902_JH_EV_Ubi_2 7249 sp|Q9NQ84|GPC5C_HUMAN;sp|Q9NQ84-2|GPC5C_HUMAN 345;357 sp|Q9NQ84|GPC5C_HUMAN sp|Q9NQ84|GPC5C_HUMAN sp|Q9NQ84|GPC5C_HUMAN G-protein coupled receptor family C group 5 member C OS=Homo sapiens OX=9606 GN=GPRC5C PE=1 SV=2;sp|Q9NQ84-2|GPC5C_HUMAN Isoform 2 of G-protein coupled receptor family C group 5 member C OS=Homo sapiens OX=9606 GN=GPRC5C 1 94.9584 1.62097E-18 152.13 112.22 94.958 1 149.422 2.25309E-18 149.42 1 111.57 1.2221E-06 111.57 1 152.134 1.62097E-18 152.13 1 86.5733 0.000112429 86.573 1 96.8047 3.77325E-05 96.805 1 136.326 1.13373E-13 136.33 1 85.51 0.000151573 85.51 1 94.9584 4.73765E-05 94.958 2 M EQKGQSMFVENKAFSMDEPVAAKRPVSPYSG X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPPPPXXXXXXXX GQSM(1)FVENKAFSM(1)DEPVAAK GQSM(94.96)FVENKAFSM(94.96)DEPVAAK 13 3 0.92241 32668000 0 32668000 0 NaN 5363000 1600300 0 6919600 7076300 3500300 2319600 2126000 3763100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 5363000 0 0 1600300 0 0 0 0 0 6919600 0 0 7076300 0 0 3500300 0 0 2319600 0 0 2126000 0 0 3763100 0 1080 2004 345 345 1672 1904;1905 5334;5335;5336;5337;5338;5339;5340;5341 5615;5616;5617;5618;5619;5620;5621;5622 5341 5622 20190902_JH_WT_Ubi_3 8413 5335 5616 20190902_JH_EV_Ubi_2 7249 5335 5616 20190902_JH_EV_Ubi_2 7249 sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN 79;79;79 sp|Q9NQC3-2|RTN4_HUMAN sp|Q9NQC3-2|RTN4_HUMAN sp|Q9NQC3-2|RTN4_HUMAN Isoform 2 of Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4;sp|Q9NQC3-5|RTN4_HUMAN Isoform 5 of Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4;sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4 PE=1 SV=2 1 74.0286 1.32253E-06 76.109 50.782 74.029 1 41.4831 0.00736763 41.483 1 42.339 0.0124983 42.339 1 74.0286 8.76435E-06 74.029 1 42.339 0.0124983 42.339 1 76.1094 1.32253E-06 76.109 1 M SAAPVPTAPAAGAPLMDFGNDFVPPAPRGPL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPXXX PAAGLSAAPVPTAPAAGAPLM(1)DFGNDFVPPAPR PAAGLSAAPVPTAPAAGAPLM(74.03)DFGNDFVPPAPR 21 3 0.84983 18975000 18975000 0 0 6.9628 0 0 7232400 0 0 0 0 4947000 5411900 NaN NaN NaN NaN NaN NaN NaN 6.7776 2.7123 0 0 0 0 0 0 7232400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4947000 0 0 5411900 0 0 1081 2005 79 79 2410;3278 2739;3745 7879;7880;7881;10534;10535 8283;8284;8285;8286;8287;11083;11084 10535 11084 20190902_JH_EV_Ubi_3 12346 7881 8286 20190902_JH_WT_Ubi_3 13371 7881 8286 20190902_JH_WT_Ubi_3 13371 sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN;sp|Q9NQC3-4|RTN4_HUMAN 1;1;1;1 sp|Q9NQC3-2|RTN4_HUMAN sp|Q9NQC3-2|RTN4_HUMAN sp|Q9NQC3-2|RTN4_HUMAN Isoform 2 of Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4;sp|Q9NQC3-5|RTN4_HUMAN Isoform 5 of Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4;sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4 PE=1 SV=2;sp|Q9NQC3-4|RTN4_HUMA 1 97.5886 3.01278E-07 97.589 74.686 97.589 1 90.8824 1.29103E-06 90.882 1 86.4391 1.09958E-05 86.439 1 97.5886 3.01278E-07 97.589 1 M _______________MEDLDQSPLVSSSDSP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EDLDQSPLVSSSDSPPRPQPAFK M(97.59)EDLDQSPLVSSSDSPPRPQPAFK 1 3 1.1123 24660000 24660000 0 0 NaN 0 0 6239900 0 0 0 0 9709700 8710700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 6239900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9709700 0 0 8710700 0 0 1082 2005 1 1 2892 3284 9323;9324;9325 9816;9817;9818 9325 9818 20190902_JH_WT_Ubi_3 11830 9325 9818 20190902_JH_WT_Ubi_3 11830 9325 9818 20190902_JH_WT_Ubi_3 11830 sp|Q9NR09|BIRC6_HUMAN 4089 sp|Q9NR09|BIRC6_HUMAN sp|Q9NR09|BIRC6_HUMAN sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=2 1 107.948 2.8293E-10 107.95 80.745 107.95 1 43.1624 0.0252609 43.162 1 80.4535 0.000117286 80.453 1 101.855 8.05294E-10 101.85 1 107.948 2.8293E-10 107.95 1 M FAGMGGLALIAERLPMLYPEVIQQVSAPVVT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP LPM(1)LYPEVIQQVSAPVVTSTTQEKPK LPM(107.95)LYPEVIQQVSAPVVTSTTQEKPK 3 3 -0.17575 3430900 3430900 0 0 NaN 452300 945990 0 0 0 663410 1369200 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 452300 0 0 945990 0 0 0 0 0 0 0 0 0 0 0 663410 0 0 1369200 0 0 0 0 0 0 0 0 1083 2008 4089 4089 2756 3130 8920;8921;8922;8923 9383;9384;9385;9386;9387 8923 9387 20190902_JH_MUT_Ubi_3 11734 8923 9387 20190902_JH_MUT_Ubi_3 11734 8923 9387 20190902_JH_MUT_Ubi_3 11734 sp|Q9NRD5-2|PICK1_HUMAN;sp|Q9NRD5|PICK1_HUMAN 112;112 sp|Q9NRD5-2|PICK1_HUMAN sp|Q9NRD5-2|PICK1_HUMAN sp|Q9NRD5-2|PICK1_HUMAN Isoform 2 of PRKCA-binding protein OS=Homo sapiens OX=9606 GN=PICK1;sp|Q9NRD5|PICK1_HUMAN PRKCA-binding protein OS=Homo sapiens OX=9606 GN=PICK1 PE=1 SV=2 1 65.5005 0.024114 65.5 6.824 65.5 1 64.1031 0.0254859 64.103 1 65.5005 0.024114 65.5 1 M VTIHYNKLQADPKQGMSLDIVLKKVKHRLVE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX QGM(1)SLDIVLKK QGM(65.5)SLDIVLKK 3 3 -0.94304 5309400 5309400 0 0 NaN 2714200 2595100 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2714200 0 0 2595100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1084 2013 112 112 3631 4140 11654;11655 12231;12232 11655 12232 20190821_JH_MUT_Ubi 5591 11655 12232 20190821_JH_MUT_Ubi 5591 11655 12232 20190821_JH_MUT_Ubi 5591 sp|Q9NRV9|HEBP1_HUMAN 76 sp|Q9NRV9|HEBP1_HUMAN sp|Q9NRV9|HEBP1_HUMAN sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens OX=9606 GN=HEBP1 PE=1 SV=1 1 51.4692 0.00690494 51.469 12.082 51.469 1 51.4692 0.00690494 51.469 2 M KVAKYAGGTNDKGIGMGMTVPISFAVFPNED X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP GIGM(1)GM(1)TVPISFAVFPNEDGSLQK GIGM(51.47)GM(51.47)TVPISFAVFPNEDGSLQK 4 3 -0.88944 765970 0 765970 0 NaN 0 0 0 0 0 0 0 765970 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 765970 0 0 0 0 1085 2016 76 76 1531 1745 4908 5162 4908 5162 20190902_JH_WT_Ubi_2 14928 4908 5162 20190902_JH_WT_Ubi_2 14928 4908 5162 20190902_JH_WT_Ubi_2 14928 sp|Q9NRV9|HEBP1_HUMAN 78 sp|Q9NRV9|HEBP1_HUMAN sp|Q9NRV9|HEBP1_HUMAN sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens OX=9606 GN=HEBP1 PE=1 SV=1 1 51.4692 0.00690494 51.469 12.082 51.469 1 51.4692 0.00690494 51.469 2 M AKYAGGTNDKGIGMGMTVPISFAVFPNEDGS X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP GIGM(1)GM(1)TVPISFAVFPNEDGSLQK GIGM(51.47)GM(51.47)TVPISFAVFPNEDGSLQK 6 3 -0.88944 765970 0 765970 0 NaN 0 0 0 0 0 0 0 765970 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 765970 0 0 0 0 1086 2016 78 78 1531 1745 4908 5162 4908 5162 20190902_JH_WT_Ubi_2 14928 4908 5162 20190902_JH_WT_Ubi_2 14928 4908 5162 20190902_JH_WT_Ubi_2 14928 sp|Q9NRX4|PHP14_HUMAN 95 sp|Q9NRX4|PHP14_HUMAN sp|Q9NRX4|PHP14_HUMAN sp|Q9NRX4|PHP14_HUMAN 14 kDa phosphohistidine phosphatase OS=Homo sapiens OX=9606 GN=PHPT1 PE=1 SV=1 1 51.5662 0.0132502 51.566 16.845 51.566 1 51.5662 0.0132502 51.566 1 M SHQSQDKKIHVYGYSMAYGPAQHAISTEKIK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPXX IHVYGYSM(1)AYGPAQHAISTEK IHVYGYSM(51.57)AYGPAQHAISTEK 8 3 0.45588 1411300 1411300 0 0 NaN 0 0 1411300 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1411300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1087 2019 95 95 2144 2445 7108 7481 7108 7481 20190821_JH_WT_Ubi 6376 7108 7481 20190821_JH_WT_Ubi 6376 7108 7481 20190821_JH_WT_Ubi 6376 sp|Q9NS69|TOM22_HUMAN 108 sp|Q9NS69|TOM22_HUMAN sp|Q9NS69|TOM22_HUMAN sp|Q9NS69|TOM22_HUMAN Mitochondrial import receptor subunit TOM22 homolog OS=Homo sapiens OX=9606 GN=TOMM22 PE=1 SV=3 1 53.2374 0.0289193 53.237 11.207 53.237 1 53.2374 0.0289193 53.237 1 M MILVLPVVFETEKLQMEQQQQLQQRQILLGP X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;Deamidation (NQ);Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX LQM(1)EQQQQLQQR LQM(53.24)EQQQQLQQR 3 3 -0.54775 17439000 17439000 0 0 NaN 0 17439000 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 17439000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1088 2023 108 108 2784 3160 8997 9467 8997 9467 20190821_JH_MUT_Ubi 2791 8997 9467 20190821_JH_MUT_Ubi 2791 8997 9467 20190821_JH_MUT_Ubi 2791 sp|Q9NS69|TOM22_HUMAN 131 sp|Q9NS69|TOM22_HUMAN sp|Q9NS69|TOM22_HUMAN sp|Q9NS69|TOM22_HUMAN Mitochondrial import receptor subunit TOM22 homolog OS=Homo sapiens OX=9606 GN=TOMM22 PE=1 SV=3 1 77.0997 0.000200127 77.1 43.264 77.1 1 43.64 0.0214557 43.64 1 41.2561 0.0257712 41.256 1 77.0997 0.000200127 77.1 1 M QRQILLGPNTGLSGGMPGALPSLPGKI____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPXXXXX QILLGPNTGLSGGM(1)PGALPSLPGK QILLGPNTGLSGGM(77.1)PGALPSLPGK 14 3 -1.8486 2973500 2973500 0 0 NaN 1511800 0 0 651130 810580 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 1511800 0 0 0 0 0 0 0 0 651130 0 0 810580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1089 2023 131 131 3638 4147 11664;11665;11666 12241;12242;12243 11666 12243 20190902_JH_EV_Ubi_3 11603 11666 12243 20190902_JH_EV_Ubi_3 11603 11666 12243 20190902_JH_EV_Ubi_3 11603 sp|Q9NSV4-7|DIAP3_HUMAN;sp|Q9NSV4-4|DIAP3_HUMAN;sp|Q9NSV4|DIAP3_HUMAN 129;118;129 sp|Q9NSV4-7|DIAP3_HUMAN sp|Q9NSV4-7|DIAP3_HUMAN sp|Q9NSV4-7|DIAP3_HUMAN Isoform 7 of Protein diaphanous homolog 3 OS=Homo sapiens OX=9606 GN=DIAPH3;sp|Q9NSV4-4|DIAP3_HUMAN Isoform 4 of Protein diaphanous homolog 3 OS=Homo sapiens OX=9606 GN=DIAPH3;sp|Q9NSV4|DIAP3_HUMAN Protein diaphanous homolog 3 OS=Ho 0.490711 0 0.0318198 43.03 16.739 43.03 0.490711 0 0.0318198 43.03 M PKPLSENELLELFEKMMEDMNLNEDKKAPLR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(0.491)M(0.491)EDM(0.019)NLNEDKKAPLR M(0)M(0)EDM(-14.22)NLNEDKKAPLR 1 4 3.0538 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1090 2029 129 129 2946 3348 9487 9987 20190902_JH_WT_Ubi_2 7416 9487 9987 20190902_JH_WT_Ubi_2 7416 9487 9987 20190902_JH_WT_Ubi_2 7416 sp|Q9NSV4-7|DIAP3_HUMAN;sp|Q9NSV4-4|DIAP3_HUMAN;sp|Q9NSV4|DIAP3_HUMAN 130;119;130 sp|Q9NSV4-7|DIAP3_HUMAN sp|Q9NSV4-7|DIAP3_HUMAN sp|Q9NSV4-7|DIAP3_HUMAN Isoform 7 of Protein diaphanous homolog 3 OS=Homo sapiens OX=9606 GN=DIAPH3;sp|Q9NSV4-4|DIAP3_HUMAN Isoform 4 of Protein diaphanous homolog 3 OS=Homo sapiens OX=9606 GN=DIAPH3;sp|Q9NSV4|DIAP3_HUMAN Protein diaphanous homolog 3 OS=Ho 0.490711 0 0.0318198 43.03 16.739 43.03 0.490711 0 0.0318198 43.03 M KPLSENELLELFEKMMEDMNLNEDKKAPLRE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX M(0.491)M(0.491)EDM(0.019)NLNEDKKAPLR M(0)M(0)EDM(-14.22)NLNEDKKAPLR 2 4 3.0538 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091 2029 130 130 2946 3348 9487 9987 20190902_JH_WT_Ubi_2 7416 9487 9987 20190902_JH_WT_Ubi_2 7416 9487 9987 20190902_JH_WT_Ubi_2 7416 sp|Q9NUB1-4|ACS2L_HUMAN;sp|Q9NUB1-2|ACS2L_HUMAN;sp|Q9NUB1|ACS2L_HUMAN 1;1;1 sp|Q9NUB1-4|ACS2L_HUMAN sp|Q9NUB1-4|ACS2L_HUMAN sp|Q9NUB1-4|ACS2L_HUMAN Isoform 4 of Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Homo sapiens OX=9606 GN=ACSS1;sp|Q9NUB1-2|ACS2L_HUMAN Isoform 2 of Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Homo sapiens OX=9606 GN=ACSS1;sp|Q9NUB1|ACS2 1 49.4658 0.0233555 49.466 8.3858 49.466 1 49.4658 0.0233555 49.466 1 M _______________MAARTLGRGVGRLLGS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX M(1)AARTLGRGVGR M(49.47)AARTLGRGVGR 1 3 -2.622 5731800 5731800 0 0 NaN 0 0 0 0 0 5731800 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5731800 0 0 0 0 0 0 0 0 0 0 0 1092 2032 1 1 2872 3257 9246 9731 9246 9731 20190902_JH_MUT_Ubi_2 5705 9246 9731 20190902_JH_MUT_Ubi_2 5705 9246 9731 20190902_JH_MUT_Ubi_2 5705 sp|Q9NUM4|T106B_HUMAN 26 sp|Q9NUM4|T106B_HUMAN sp|Q9NUM4|T106B_HUMAN sp|Q9NUM4|T106B_HUMAN Transmembrane protein 106B OS=Homo sapiens OX=9606 GN=TMEM106B PE=1 SV=2 1 99.1104 1.87089E-07 99.11 71.186 99.11 1 52.9898 0.00543148 52.99 1 51.4307 0.00604826 51.431 1 50.8578 0.00677168 50.858 1 43.4968 0.0175274 43.497 1 51.4692 0.00603304 51.469 1 63.3977 0.0023774 63.398 1 99.1104 1.87089E-07 99.11 1 M HSSKEDAYDGVTSENMRNGLVNSEVHNEDGR X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX SLSHLPLHSSKEDAYDGVTSENM(1)R SLSHLPLHSSKEDAYDGVTSENM(99.11)R 23 3 0.0068322 47470000 47470000 0 0 NaN 8667800 2876600 11669000 5810500 7278600 9195700 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 8667800 0 0 2876600 0 0 11669000 0 0 5810500 0 0 7278600 0 0 9195700 0 0 0 0 0 0 0 0 0 0 0 1093 2033 26 26 4049 4597 12822;12823;12824;12825;12826;12827;12828;12829 13446;13447;13448;13449;13450;13451;13452;13453 12829 13453 20190902_JH_WT_Ubi_2 7469 12829 13453 20190902_JH_WT_Ubi_2 7469 12829 13453 20190902_JH_WT_Ubi_2 7469 sp|Q9UMR2-2|DD19B_HUMAN;sp|Q9UMR2-4|DD19B_HUMAN;sp|Q9NUU7|DD19A_HUMAN;sp|Q9UMR2|DD19B_HUMAN;sp|Q9UMR2-3|DD19B_HUMAN;sp|Q9NUU7-2|DD19A_HUMAN 336;341;366;367;258;276 sp|Q9UMR2-2|DD19B_HUMAN sp|Q9UMR2-2|DD19B_HUMAN sp|Q9UMR2-2|DD19B_HUMAN Isoform 2 of ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B;sp|Q9UMR2-4|DD19B_HUMAN Isoform 4 of ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B;sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helica 1 50.0528 0.0309278 50.053 12.025 50.053 1 50.0528 0.0309278 50.053 2 M ELSKEGHQVALLSGEMMVEQRAAVIERFREG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPXXXXXXXXXX EGHQVALLSGEM(1)M(1)VEQR EGHQVALLSGEM(50.05)M(50.05)VEQR 12 3 -1.3198 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1094 2036 336 336 895 1013 2844 2992 2844 2992 20190902_JH_WT_Ubi_2 8206 2844 2992 20190902_JH_WT_Ubi_2 8206 2844 2992 20190902_JH_WT_Ubi_2 8206 sp|Q9UMR2-2|DD19B_HUMAN;sp|Q9UMR2-4|DD19B_HUMAN;sp|Q9NUU7|DD19A_HUMAN;sp|Q9UMR2|DD19B_HUMAN;sp|Q9UMR2-3|DD19B_HUMAN;sp|Q9NUU7-2|DD19A_HUMAN 337;342;367;368;259;277 sp|Q9UMR2-2|DD19B_HUMAN sp|Q9UMR2-2|DD19B_HUMAN sp|Q9UMR2-2|DD19B_HUMAN Isoform 2 of ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B;sp|Q9UMR2-4|DD19B_HUMAN Isoform 4 of ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B;sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helica 1 50.0528 0.0309278 50.053 12.025 50.053 1 50.0528 0.0309278 50.053 2 M LSKEGHQVALLSGEMMVEQRAAVIERFREGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXPPPPPPPPPPPPPPPPPXXXXXXXXXXX EGHQVALLSGEM(1)M(1)VEQR EGHQVALLSGEM(50.05)M(50.05)VEQR 13 3 -1.3198 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1095 2036 337 337 895 1013 2844 2992 2844 2992 20190902_JH_WT_Ubi_2 8206 2844 2992 20190902_JH_WT_Ubi_2 8206 2844 2992 20190902_JH_WT_Ubi_2 8206 sp|Q9NV92|NFIP2_HUMAN 197 sp|Q9NV92|NFIP2_HUMAN sp|Q9NV92|NFIP2_HUMAN sp|Q9NV92|NFIP2_HUMAN NEDD4 family-interacting protein 2 OS=Homo sapiens OX=9606 GN=NDFIP2 PE=1 SV=2 1 150.763 1.29737E-18 159.41 93.603 150.76 1 154.131 1.57256E-14 154.13 1 125.672 2.64023E-07 125.67 1 139.21 1.00132E-09 139.21 1 159.412 1.29737E-18 159.41 1 150.123 2.22464E-13 150.12 1 152.107 1.73256E-13 152.11 1 150.763 2.0658E-13 150.76 1 M SLPTYDEAEKAKAAAMAAAAAETSQRIQEEE X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX AKAAAM(1)AAAAAETSQR AKAAAM(150.76)AAAAAETSQR 6 3 0.11746 67063000 67063000 0 0 2.1464 0 4953600 0 4728100 7136600 15425000 15989000 0 18830000 NaN 1.0055 0 NaN NaN 4.179 2.867 0 7.2907 0 0 0 4953600 0 0 0 0 0 4728100 0 0 7136600 0 0 15425000 0 0 15989000 0 0 0 0 0 18830000 0 0 1096 2039 197 197 177 202 586;587;588;589;590;591;592 641;642;643;644;645;646;647 592 647 20190902_JH_WT_Ubi_3 4916 588 643 20190902_JH_EV_Ubi_3 4048 588 643 20190902_JH_EV_Ubi_3 4048 sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN 3;3 sp|Q9NV96-2|CC50A_HUMAN sp|Q9NV96-2|CC50A_HUMAN sp|Q9NV96-2|CC50A_HUMAN Isoform 2 of Cell cycle control protein 50A OS=Homo sapiens OX=9606 GN=TMEM30A;sp|Q9NV96|CC50A_HUMAN Cell cycle control protein 50A OS=Homo sapiens OX=9606 GN=TMEM30A PE=1 SV=1 1 144.951 2.8102E-68 208.87 175.1 144.95 1 134.8 5.47588E-38 182 1 136.921 1.39651E-30 169.77 1 181.537 7.89186E-38 181.54 1 85.1099 2.24909E-57 205.55 1 183.18 6.69007E-46 183.18 1 167.354 3.99314E-30 167.35 1 144.951 2.8102E-68 208.87 1 193.363 9.32641E-47 193.36 1 184.876 5.73101E-46 184.88 1 M _____________MAMNYNAKDEVDGGPPCA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP AM(1)NYNAKDEVDGGPPCAPGGTAKTR AM(144.95)NYNAKDEVDGGPPCAPGGTAKTR 2 3 -1.9652 64686000 64686000 0 0 4.9699 6101700 4669200 4251700 6282800 7317000 8628600 7358000 5736100 5464800 3.2721 1.7396 NaN NaN NaN 3.041 2.481 2.1535 NaN 6101700 0 0 4669200 0 0 4251700 0 0 6282800 0 0 7317000 0 0 8628600 0 0 7358000 0 0 5736100 0 0 5464800 0 0 1097 2040 3 3 232;233 267;269 777;778;779;780;781;782;783;784;785;791;792;793;794 847;848;849;850;851;852;853;854;855;856;863;864;865;866 794 866 20190902_JH_MUT_Ubi_3 6377 782 852 20190902_JH_MUT_Ubi_3 7240 782 852 20190902_JH_MUT_Ubi_3 7240 sp|Q9NVH2-4|INT7_HUMAN;sp|Q9NVH2-3|INT7_HUMAN;sp|Q9NVH2-2|INT7_HUMAN;sp|Q9NVH2|INT7_HUMAN 824;853;859;873 sp|Q9NVH2-4|INT7_HUMAN sp|Q9NVH2-4|INT7_HUMAN sp|Q9NVH2-4|INT7_HUMAN Isoform 4 of Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7;sp|Q9NVH2-3|INT7_HUMAN Isoform 3 of Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7;sp|Q9NVH2-2|INT7_HUMAN Isoform 2 of Integrator complex subun 1 144.272 6.11056E-14 144.3 117.03 144.27 1 81.6061 0.00044513 81.606 1 127.006 3.73728E-09 127.01 1 77.3565 0.000652179 77.357 1 127.586 3.47079E-09 127.59 1 120.56 5.7008E-07 120.56 1 144.303 6.11056E-14 144.3 1 108.446 1.37134E-05 108.45 1 144.272 6.17795E-14 144.27 1;2 M LQSKSGQDYKIPIDNMTNEMEQRVEPHNDYF X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPPPPXXXXXXXX SGQDYKIPIDNM(1)TNEM(1)EQR SGQDYKIPIDNM(144.27)TNEM(144.27)EQR 12 3 -0.19039 41942000 5307800 36634000 0 NaN 0 2524700 6683700 2422700 2364200 3960900 4706700 11979000 7299800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 593440 1931200 0 0 6683700 0 0 2422700 0 0 2364200 0 1280300 2680700 0 0 4706700 0 2044700 9934300 0 1389400 5910400 0 1098 2044 824 824 3934 4469;4470 12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12477;12478 13079;13080;13081;13082;13083;13084;13085;13086;13087;13088;13090;13091 12473 13086 20190902_JH_WT_Ubi_3 7716 12470 13083 20190902_JH_MUT_Ubi_3 6606 12470 13083 20190902_JH_MUT_Ubi_3 6606 sp|Q9NVH2-4|INT7_HUMAN;sp|Q9NVH2-3|INT7_HUMAN;sp|Q9NVH2-2|INT7_HUMAN;sp|Q9NVH2|INT7_HUMAN 828;857;863;877 sp|Q9NVH2-4|INT7_HUMAN sp|Q9NVH2-4|INT7_HUMAN sp|Q9NVH2-4|INT7_HUMAN Isoform 4 of Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7;sp|Q9NVH2-3|INT7_HUMAN Isoform 3 of Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7;sp|Q9NVH2-2|INT7_HUMAN Isoform 2 of Integrator complex subun 1 144.272 6.11056E-14 144.3 117.03 144.27 1 81.6061 0.00044513 81.606 1 127.006 3.73728E-09 127.01 1 77.3565 0.000652179 77.357 1 127.586 3.47079E-09 127.59 1 120.56 5.7008E-07 120.56 1 144.303 6.11056E-14 144.3 1 108.446 1.37134E-05 108.45 1 144.272 6.17795E-14 144.27 1;2 M SGQDYKIPIDNMTNEMEQRVEPHNDYFSTQF X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX SGQDYKIPIDNM(1)TNEM(1)EQR SGQDYKIPIDNM(144.27)TNEM(144.27)EQR 16 3 -0.19039 38045000 1411300 36634000 0 NaN 0 1931200 6683700 2422700 2364200 2680700 6118000 9934300 5910400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 1931200 0 0 6683700 0 0 2422700 0 0 2364200 0 0 2680700 0 1411300 4706700 0 0 9934300 0 0 5910400 0 1099 2044 828 828 3934 4469;4470 12466;12467;12468;12469;12470;12471;12472;12473;12476 13079;13080;13081;13082;13083;13084;13085;13086;13089 12473 13086 20190902_JH_WT_Ubi_3 7716 12470 13083 20190902_JH_MUT_Ubi_3 6606 12470 13083 20190902_JH_MUT_Ubi_3 6606 sp|Q9NVI1-2|FANCI_HUMAN;sp|Q9NVI1-1|FANCI_HUMAN;sp|Q9NVI1|FANCI_HUMAN 1218;1219;1279 sp|Q9NVI1-2|FANCI_HUMAN sp|Q9NVI1-2|FANCI_HUMAN sp|Q9NVI1-2|FANCI_HUMAN Isoform 2 of Fanconi anemia group I protein OS=Homo sapiens OX=9606 GN=FANCI;sp|Q9NVI1-1|FANCI_HUMAN Isoform 1 of Fanconi anemia group I protein OS=Homo sapiens OX=9606 GN=FANCI;sp|Q9NVI1|FANCI_HUMAN Fanconi anemia group I protein O 0.998104 27.2469 0.0307317 76.228 20.967 76.228 0.998104 27.2469 0.0307317 76.228 1 M LIHLSKKSKVNLMQHMKLSTSRDFKIKGNIL X;X;X;X;X;X;GlyGly (K);X;GlyGly (K);X;Deamidation (NQ);X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX KSKVNLM(0.002)QHM(0.998)K KSKVNLM(-27.25)QHM(27.25)K 10 3 1.8299 7166400 7166400 0 0 NaN 0 0 0 0 0 0 0 7166400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7166400 0 0 0 0 0 1100 2045 1218 1218 2457 2792 8031 8442 8031 8442 20190902_JH_WT_Ubi_2 8179 8031 8442 20190902_JH_WT_Ubi_2 8179 8031 8442 20190902_JH_WT_Ubi_2 8179 sp|Q9NVW2|RNF12_HUMAN 1 sp|Q9NVW2|RNF12_HUMAN sp|Q9NVW2|RNF12_HUMAN sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3 1 40.5195 3.72761E-06 110.77 89.514 40.52 1 40.5195 0.0341071 40.52 1 110.768 3.72761E-06 110.77 1 82.1208 0.00237257 82.121 1 M _______________MENSDSNDKGSGDQSA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)ENSDSNDKGSGDQSAAQR M(40.52)ENSDSNDKGSGDQSAAQR 1 3 0.017803 964790 964790 0 0 NaN 0 160610 0 479060 325120 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 160610 0 0 0 0 0 479060 0 0 325120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1101 2049 1 1 2904 3298 9366;9367;9368 9859;9860;9861 9368 9861 20190821_JH_MUT_Ubi 2784 9366 9859 20190902_JH_EV_Ubi_2 3814 9366 9859 20190902_JH_EV_Ubi_2 3814 sp|Q9NX40-3|OCAD1_HUMAN;sp|Q9NX40-2|OCAD1_HUMAN;sp|Q9NX40-4|OCAD1_HUMAN;sp|Q9NX40|OCAD1_HUMAN 55;55;55;55 sp|Q9NX40-3|OCAD1_HUMAN sp|Q9NX40-3|OCAD1_HUMAN sp|Q9NX40-3|OCAD1_HUMAN Isoform 3 of OCIA domain-containing protein 1 OS=Homo sapiens OX=9606 GN=OCIAD1;sp|Q9NX40-2|OCAD1_HUMAN Isoform 2 of OCIA domain-containing protein 1 OS=Homo sapiens OX=9606 GN=OCIAD1;sp|Q9NX40-4|OCAD1_HUMAN Isoform 4 of OCIA domain 1 51.7977 0.0185222 51.798 24.468 51.798 1 51.7977 0.0185222 51.798 1 M DESFWFRSVPLAATSMLITQGLISKGILSSH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPXXXXXX SVPLAATSM(1)LITQGLISK SVPLAATSM(51.8)LITQGLISK 9 3 -1.8822 2170600 2170600 0 0 1.6715 0 0 0 0 0 0 0 0 2170600 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2170600 0 0 1102 2056 55 55 4217 4788 13340 13994 13340 13994 20190902_JH_WT_Ubi_3 13978 13340 13994 20190902_JH_WT_Ubi_3 13978 13340 13994 20190902_JH_WT_Ubi_3 13978 sp|Q9NXR7-4|BABA2_HUMAN;sp|Q9NXR7-3|BABA2_HUMAN;sp|Q9NXR7|BABA2_HUMAN;sp|Q9NXR7-1|BABA2_HUMAN 139;139;139;139 sp|Q9NXR7-4|BABA2_HUMAN sp|Q9NXR7-4|BABA2_HUMAN sp|Q9NXR7-4|BABA2_HUMAN Isoform 4 of BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2;sp|Q9NXR7-3|BABA2_HUMAN Isoform 3 of BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2;sp|Q9NXR7|BABA2_HUMAN BRISC and BRCA1-A comp 0.999888 40.3257 0.00545224 62.19 31.98 62.19 0.999888 40.3257 0.00545224 62.19 1 M YHQFQCSRLRESSRLMFEYQTLLEEPQYGEN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ) XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP LM(1)FEYQTLLEEPQYGENMEIYAGK LM(40.33)FEYQTLLEEPQYGENM(-40.33)EIYAGK 2 3 -3.7897 1531900 1531900 0 0 NaN 0 0 0 0 0 1531900 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1531900 0 0 0 0 0 0 0 0 0 0 0 1103 2061 139 139 2717 3089 8813 9269 8813 9269 20190902_JH_MUT_Ubi_2 9029 8813 9269 20190902_JH_MUT_Ubi_2 9029 8813 9269 20190902_JH_MUT_Ubi_2 9029 sp|Q9NZ56-2|FMN2_HUMAN;sp|Q9NZ56|FMN2_HUMAN 209;1613 sp|Q9NZ56-2|FMN2_HUMAN sp|Q9NZ56-2|FMN2_HUMAN sp|Q9NZ56-2|FMN2_HUMAN Isoform 2 of Formin-2 OS=Homo sapiens OX=9606 GN=FMN2;sp|Q9NZ56|FMN2_HUMAN Formin-2 OS=Homo sapiens OX=9606 GN=FMN2 PE=1 SV=4 0.991893 25.3308 0.0257011 46.353 8.5452 46.353 0.991893 25.3308 0.0257011 46.353 1 M YQVSSKEHMQPFKENMEQFIIQAKIDQEAEE X;Deamidation (NQ);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;Deamidation (NQ);Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX VYQVSSKEHM(0.008)QPFKENM(0.992)EQFIIQAK VYQVSSKEHM(-25.33)QPFKENM(25.33)EQFIIQAK 17 3 2.5766 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1104 2069 209 209 5084 5778 16400 17234 16400 17234 20190821_JH_WT_Ubi 9480 16400 17234 20190821_JH_WT_Ubi 9480 16400 17234 20190821_JH_WT_Ubi 9480 sp|Q9NZB2|F120A_HUMAN;sp|Q9NZB2-6|F120A_HUMAN;sp|Q9NZB2-2|F120A_HUMAN;sp|Q9NZB2-5|F120A_HUMAN;sp|Q9NZB2-4|F120A_HUMAN 335;335;335;335;335 sp|Q9NZB2|F120A_HUMAN sp|Q9NZB2|F120A_HUMAN sp|Q9NZB2|F120A_HUMAN Constitutive coactivator of PPAR-gamma-like protein 1 OS=Homo sapiens OX=9606 GN=FAM120A PE=1 SV=2;sp|Q9NZB2-6|F120A_HUMAN Isoform F of Constitutive coactivator of PPAR-gamma-like protein 1 OS=Homo sapiens OX=9606 GN=FAM120A;sp|Q9NZB2 1 47.0619 0.0222489 58.674 26.515 47.062 1 53.2519 0.0285125 53.252 1 58.1324 0.0222489 58.674 1 47.0619 0.0367347 47.062 1 M RFKRAIGYYSATSKPMSFHPPHYLAARPGPF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPXXXX PM(1)SFHPPHYLAAR PM(47.06)SFHPPHYLAAR 2 4 0.4461 29992000 29992000 0 0 5.0121 0 0 5006300 0 0 0 0 12254000 9734800 NaN NaN 1.3102 NaN NaN NaN NaN NaN 4.5008 0 0 0 0 0 0 5006300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12254000 0 0 9734800 0 0 1105 2070 335 335 3469 3956 11133;11134;11135;11136 11698;11699;11700;11701 11136 11701 20190902_JH_WT_Ubi_3 6762 11134 11699 20190902_JH_WT_Ubi_2 7063 11134 11699 20190902_JH_WT_Ubi_2 7063 sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN 1419;1432;1390;1432 sp|Q9NZM1-6|MYOF_HUMAN sp|Q9NZM1-6|MYOF_HUMAN sp|Q9NZM1-6|MYOF_HUMAN Isoform 6 of Myoferlin OS=Homo sapiens OX=9606 GN=MYOF;sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens OX=9606 GN=MYOF PE=1 SV=1;sp|Q9NZM1-2|MYOF_HUMAN Isoform 2 of Myoferlin OS=Homo sapiens OX=9606 GN=MYOF;sp|Q9NZM1-3|MYOF_HUMAN Isof 1 63.2122 0.015822 63.212 11.337 63.212 1 63.2122 0.015822 63.212 1 M ASLLSAPPCRDIVIEMEDTKPLLASKLTEKE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;GlyGly (K);X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPXXXXX DIVIEM(1)EDTKPLLASK DIVIEM(63.21)EDTKPLLASK 6 3 0.96912 1259000 1259000 0 0 NaN 0 0 0 0 1259000 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 1259000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1106 2073 1419 1419 547 630 1754 1859 1754 1859 20190902_JH_EV_Ubi_3 9044 1754 1859 20190902_JH_EV_Ubi_3 9044 1754 1859 20190902_JH_EV_Ubi_3 9044 sp|Q9NZN4|EHD2_HUMAN 137 sp|Q9NZN4|EHD2_HUMAN sp|Q9NZN4|EHD2_HUMAN sp|Q9NZN4|EHD2_HUMAN EH domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EHD2 PE=1 SV=2 1 60.1723 9.33856E-05 74.63 56.332 60.172 1 74.6297 9.33856E-05 74.63 1 60.1723 0.000470292 68.024 1 M FRKLNPFGNTFLNRFMCAQLPNQVLESISII X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP FM(1)CAQLPNQVLESISIIDTPGILSGAKQR FM(60.17)CAQLPNQVLESISIIDTPGILSGAKQR 2 3 -2.6893 2757900 2757900 0 0 NaN 0 0 0 0 0 306450 0 0 1373000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 306450 0 0 0 0 0 0 0 0 1373000 0 0 1107 2074 137 137 1262;1263 1429;1430 4009;4010;4011 4217;4218;4219 4011 4219 20190902_JH_WT_Ubi_3 15268 4010 4218 20190902_JH_MUT_Ubi_2 14792 4010 4218 20190902_JH_MUT_Ubi_2 14792 sp|Q9NZN4|EHD2_HUMAN 101 sp|Q9NZN4|EHD2_HUMAN sp|Q9NZN4|EHD2_HUMAN sp|Q9NZN4|EHD2_HUMAN EH domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EHD2 PE=1 SV=2 1 42.3188 0.00679236 42.319 26.178 42.319 1 42.3188 0.00679236 42.319 1 M SRVGPEPTTDCFVAVMHGDTEGTVPGNALVV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPP VGPEPTTDCFVAVM(1)HGDTEGTVPGNALVVDPDK VGPEPTTDCFVAVM(42.32)HGDTEGTVPGNALVVDPDK 14 3 0.25402 2721500 2721500 0 0 0.71594 0 0 0 0 0 0 0 2721500 0 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2721500 0 0 0 0 0 1108 2074 101 101 4834 5485 15502 16282 15502 16282 20190902_JH_WT_Ubi_2 12674 15502 16282 20190902_JH_WT_Ubi_2 12674 15502 16282 20190902_JH_WT_Ubi_2 12674 sp|Q9P0J7|KCMF1_HUMAN 171 sp|Q9P0J7|KCMF1_HUMAN sp|Q9P0J7|KCMF1_HUMAN sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens OX=9606 GN=KCMF1 PE=1 SV=2 1 77.689 0.000148229 77.689 51.062 77.689 1 77.689 0.000148229 77.689 1 M HPGRGLGGPRARRSNMHFTSSSTGGLSSSQS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP SNM(1)HFTSSSTGGLSSSQSSYSPSNR SNM(77.69)HFTSSSTGGLSSSQSSYSPSNR 3 3 0.80486 746300 746300 0 0 NaN 0 0 0 746300 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 746300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1109 2082 171 171 4088 4640 12931 13558;13559 12931 13558 20190902_JH_EV_Ubi_2 5507 12931 13558 20190902_JH_EV_Ubi_2 5507 12931 13558 20190902_JH_EV_Ubi_2 5507 sp|Q9P0S9|TM14C_HUMAN 87 sp|Q9P0S9|TM14C_HUMAN sp|Q9P0S9|TM14C_HUMAN sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens OX=9606 GN=TMEM14C PE=1 SV=1 1 87.863 0.00370067 87.863 55.296 87.863 1 87.863 0.00370067 87.863 2 M LAGIMGMRFYHSGKFMPAGLIAGASLLMVAK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP FM(1)PAGLIAGASLLM(1)VAK FM(87.86)PAGLIAGASLLM(87.86)VAK 2 3 2.2453 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110 2084 87 87 1265 1432 4013 4221 4013 4221 20190821_JH_WT_Ubi 13870 4013 4221 20190821_JH_WT_Ubi 13870 4013 4221 20190821_JH_WT_Ubi 13870 sp|Q9P0S9|TM14C_HUMAN 99 sp|Q9P0S9|TM14C_HUMAN sp|Q9P0S9|TM14C_HUMAN sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens OX=9606 GN=TMEM14C PE=1 SV=1 1 87.863 0.00370067 87.863 55.296 87.863 1 87.863 0.00370067 87.863 2 M GKFMPAGLIAGASLLMVAKVGVSMFNRPH__ X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPXXXXXXXXXXXX FM(1)PAGLIAGASLLM(1)VAK FM(87.86)PAGLIAGASLLM(87.86)VAK 14 3 2.2453 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1111 2084 99 99 1265 1432 4013 4221 4013 4221 20190821_JH_WT_Ubi 13870 4013 4221 20190821_JH_WT_Ubi 13870 4013 4221 20190821_JH_WT_Ubi 13870 sp|Q9P0V9-3|SEP10_HUMAN;sp|Q9P0V9|SEP10_HUMAN;sp|Q9P0V9-2|SEP10_HUMAN 20;43;43 sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN Isoform 3 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10;sp|Q9P0V9|SEP10_HUMAN Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 PE=1 SV=2;sp|Q9P0V9-2|SEP10_HUMAN Isoform 2 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 1 48.2881 0.0212796 48.288 10.85 48.288 1 48.2881 0.0212796 48.288 1 M EVARHLKRENIRSLTMSGHVGFESLPDQLVN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP SLTM(1)SGHVGFESLPDQLVNR SLTM(48.29)SGHVGFESLPDQLVNR 4 3 0.57851 2121100 2121100 0 0 NaN 2121100 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2121100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1112 2085 20 20 4060 4608 12857 13483 12857 13483 20190821_JH_EV_Ubi 9879 12857 13483 20190821_JH_EV_Ubi 9879 12857 13483 20190821_JH_EV_Ubi 9879 sp|Q9P0V9-3|SEP10_HUMAN;sp|Q9P0V9|SEP10_HUMAN;sp|Q9P0V9-2|SEP10_HUMAN 230;253;253 sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN Isoform 3 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10;sp|Q9P0V9|SEP10_HUMAN Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 PE=1 SV=2;sp|Q9P0V9-2|SEP10_HUMAN Isoform 2 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 1 68.0771 0.000145454 70.391 27.193 70.391 1 68.0771 0.000145454 70.391 2 M QFPTDDDTIAKVNAAMNGQLPFAVVGSMDEV X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPPP VNAAM(1)NGQLPFAVVGSM(1)DEVKVGNKMVK VNAAM(68.08)NGQLPFAVVGSM(56.15)DEVKVGNKM(-56.15)VK 5 3 -2.0691 8333600 0 8333600 0 NaN 0 0 8333600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 8333600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1113 2085 230 230 4947 5617 15900 16708 15900 16708 20190821_JH_WT_Ubi 15791 15900 16708 20190821_JH_WT_Ubi 15791 15900 16708 20190821_JH_WT_Ubi 15791 sp|Q9P0V9-3|SEP10_HUMAN;sp|Q9P0V9|SEP10_HUMAN;sp|Q9P0V9-2|SEP10_HUMAN 242;265;265 sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN sp|Q9P0V9-3|SEP10_HUMAN Isoform 3 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10;sp|Q9P0V9|SEP10_HUMAN Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 PE=1 SV=2;sp|Q9P0V9-2|SEP10_HUMAN Isoform 2 of Septin-10 OS=Homo sapiens OX=9606 GN=SEPT10 0.999997 56.1516 0.000145454 70.391 27.193 70.391 0.999997 56.1516 0.000145454 70.391 2 M NAAMNGQLPFAVVGSMDEVKVGNKMVKARQY Deamidation (NQ);X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX VNAAM(1)NGQLPFAVVGSM(1)DEVKVGNKMVK VNAAM(68.08)NGQLPFAVVGSM(56.15)DEVKVGNKM(-56.15)VK 17 3 -2.0691 8333600 0 8333600 0 NaN 0 0 8333600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 8333600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1114 2085 242 242 4947 5617 15900 16708 15900 16708 20190821_JH_WT_Ubi 15791 15900 16708 20190821_JH_WT_Ubi 15791 15900 16708 20190821_JH_WT_Ubi 15791 sp|Q9P2E3|ZNFX1_HUMAN 1813 sp|Q9P2E3|ZNFX1_HUMAN sp|Q9P2E3|ZNFX1_HUMAN sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=2 SV=2 1 45.2567 0.0315401 45.257 10.464 45.257 1 45.2567 0.0315401 45.257 1 M TCKFTQEDEQLVQEKMEALKATLPCSGLGIS X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX TCKFTQEDEQLVQEKM(1)EALK TCKFTQEDEQLVQEKM(45.26)EALK 16 3 4.4866 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1115 2091 1813 1813 4273 4850 13533 14197 13533 14197 20190821_JH_WT_Ubi 10834 13533 14197 20190821_JH_WT_Ubi 10834 13533 14197 20190821_JH_WT_Ubi 10834 sp|Q9P2R3|ANFY1_HUMAN;sp|Q9P2R3-2|ANFY1_HUMAN;sp|Q9P2R3-4|ANFY1_HUMAN 376;376;418 sp|Q9P2R3|ANFY1_HUMAN sp|Q9P2R3|ANFY1_HUMAN sp|Q9P2R3|ANFY1_HUMAN Rabankyrin-5 OS=Homo sapiens OX=9606 GN=ANKFY1 PE=1 SV=2;sp|Q9P2R3-2|ANFY1_HUMAN Isoform 2 of Rabankyrin-5 OS=Homo sapiens OX=9606 GN=ANKFY1;sp|Q9P2R3-4|ANFY1_HUMAN Isoform 4 of Rabankyrin-5 OS=Homo sapiens OX=9606 GN=ANKFY1 1 48.3544 0.0172023 48.354 11.717 48.354 1 48.3544 0.0172023 48.354 1 M NMQDSKGRTPLHVSIMAGNEYVFSQLLQCKQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX TPLHVSIM(1)AGNEYVFSQLLQCK TPLHVSIM(48.35)AGNEYVFSQLLQCK 8 3 -1.3754 1565100 1565100 0 0 NaN 0 1565100 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1565100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1116 2098 376 376 4557 5175 14522 15264 14522 15264 20190821_JH_MUT_Ubi 12036 14522 15264 20190821_JH_MUT_Ubi 12036 14522 15264 20190821_JH_MUT_Ubi 12036 sp|Q9UBQ0|VPS29_HUMAN;sp|Q9UBQ0-2|VPS29_HUMAN 96;100 sp|Q9UBQ0|VPS29_HUMAN sp|Q9UBQ0|VPS29_HUMAN sp|Q9UBQ0|VPS29_HUMAN Vacuolar protein sorting-associated protein 29 OS=Homo sapiens OX=9606 GN=VPS29 PE=1 SV=1;sp|Q9UBQ0-2|VPS29_HUMAN Isoform 2 of Vacuolar protein sorting-associated protein 29 OS=Homo sapiens OX=9606 GN=VPS29 1 59.1821 0.00210279 62.556 35.837 59.182 1 61.6835 0.00253085 61.684 1 62.5558 0.00210279 62.556 1 41.9052 0.0219198 41.905 1 53.3271 0.00663184 53.327 1 59.1821 0.00375846 59.182 1 M KIGLIHGHQVIPWGDMASLALLQRQFDVDIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX IGLIHGHQVIPWGDM(1)ASLALLQR IGLIHGHQVIPWGDM(59.18)ASLALLQR 15 4 0.64201 75471000 75471000 0 0 4.9027 0 4347000 37887000 0 0 2353100 0 12889000 17995000 NaN NaN 2.4612 NaN NaN NaN NaN NaN NaN 0 0 0 4347000 0 0 37887000 0 0 0 0 0 0 0 0 2353100 0 0 0 0 0 12889000 0 0 17995000 0 0 1117 2104 96 96 2130 2430 7070;7071;7072;7073;7074 7443;7444;7445;7446;7447 7074 7447 20190902_JH_WT_Ubi_3 12730 7072 7445 20190821_JH_WT_Ubi 11745 7072 7445 20190821_JH_WT_Ubi 11745 sp|Q9UGH3-2|S23A2_HUMAN;sp|Q9UGH3|S23A2_HUMAN 13;13 sp|Q9UGH3-2|S23A2_HUMAN sp|Q9UGH3-2|S23A2_HUMAN sp|Q9UGH3-2|S23A2_HUMAN Isoform 2 of Solute carrier family 23 member 2 OS=Homo sapiens OX=9606 GN=SLC23A2;sp|Q9UGH3|S23A2_HUMAN Solute carrier family 23 member 2 OS=Homo sapiens OX=9606 GN=SLC23A2 PE=1 SV=1 1 71.5582 0.00123104 93.424 67.312 71.558 1 75.8771 0.00341457 79.804 1 71.5582 0.00634445 72.523 1 93.4242 0.00123104 93.424 1 M ___MMGIGKNTTSKSMEAGSSTEGKYEDEAK X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP SM(1)EAGSSTEGKYEDEAK SM(71.56)EAGSSTEGKYEDEAK 2 3 1.114 17401000 17401000 0 0 NaN 5506800 0 0 0 4837500 2229700 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 5506800 0 0 0 0 0 0 0 0 0 0 0 4837500 0 0 2229700 0 0 0 0 0 0 0 0 0 0 0 1118 2114 13 13 3233;4068 3693;4617 10393;10394;10395;12881;12882 10937;10938;10939;13507;13508 12882 13508 20190902_JH_EV_Ubi_3 3986 10395 10939 20190902_JH_MUT_Ubi_2 2422 10395 10939 20190902_JH_MUT_Ubi_2 2422 sp|Q9UGJ1-2|GCP4_HUMAN;sp|Q9UGJ1|GCP4_HUMAN 285;285 sp|Q9UGJ1-2|GCP4_HUMAN sp|Q9UGJ1-2|GCP4_HUMAN sp|Q9UGJ1-2|GCP4_HUMAN Isoform 2 of Gamma-tubulin complex component 4 OS=Homo sapiens OX=9606 GN=TUBGCP4;sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens OX=9606 GN=TUBGCP4 PE=1 SV=1 1 46.1589 0.0320149 46.159 11.884 46.159 1 46.1589 0.0320149 46.159 1 M VRVAEKILFVGESVQMFENQNVNLTRKGSIL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPXXXXX ILFVGESVQM(1)FENQNVNLTR ILFVGESVQM(46.16)FENQNVNLTR 10 3 -0.25836 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1119 2116 285 285 2190 2495 7229 7604 7229 7604 20190821_JH_MUT_Ubi 12092 7229 7604 20190821_JH_MUT_Ubi 12092 7229 7604 20190821_JH_MUT_Ubi 12092 sp|Q9UGQ3-2|GTR6_HUMAN;sp|Q9UGQ3|GTR6_HUMAN 1;1 sp|Q9UGQ3-2|GTR6_HUMAN sp|Q9UGQ3-2|GTR6_HUMAN sp|Q9UGQ3-2|GTR6_HUMAN Isoform 2 of Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens OX=9606 GN=SLC2A6;sp|Q9UGQ3|GTR6_HUMAN Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens OX=9606 GN=SLC2A6 1 79.4264 3.89929E-05 79.426 59.547 79.426 1 49.5555 0.00352819 49.555 1 47.7451 0.00504482 47.745 1 79.4264 3.89929E-05 79.426 1 M _______________MQEPLLGAEGPDYDTF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)QEPLLGAEGPDYDTFPEKPPPSPGDR M(79.43)QEPLLGAEGPDYDTFPEKPPPSPGDR 1 3 0.078512 3790000 3790000 0 0 NaN 0 549360 0 0 0 0 0 1735700 1504900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 549360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1735700 0 0 1504900 0 0 1120 2117 1 1 2956 3361 9506;9507;9508 10006;10007;10008 9508 10008 20190902_JH_WT_Ubi_3 13040 9508 10008 20190902_JH_WT_Ubi_3 13040 9508 10008 20190902_JH_WT_Ubi_3 13040 sp|Q9UHC6-2|CNTP2_HUMAN;sp|Q9UHC6|CNTP2_HUMAN 89;1312 sp|Q9UHC6-2|CNTP2_HUMAN sp|Q9UHC6-2|CNTP2_HUMAN sp|Q9UHC6-2|CNTP2_HUMAN Isoform 2 of Contactin-associated protein-like 2 OS=Homo sapiens OX=9606 GN=CNTNAP2;sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo sapiens OX=9606 GN=CNTNAP2 PE=1 SV=1 1 184.145 1.52628E-60 184.14 164.93 184.14 1 179.176 1.36093E-49 179.18 1 181.315 6.07241E-50 181.32 1 123.544 1.34353E-20 123.54 1 103.711 1.0724E-10 103.71 1 114.708 6.65601E-16 114.71 1 184.145 1.52628E-60 184.14 1 M EAKGAESAESADAAIMNNDPNFTETIDESKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP GAESAESADAAIM(1)NNDPNFTETIDESKK GAESAESADAAIM(184.14)NNDPNFTETIDESKK 13 3 -0.39886 28261000 28261000 0 0 17.35 4870600 4420700 0 3615000 5064700 4623500 5666600 0 0 2.9902 NaN NaN NaN NaN NaN NaN NaN NaN 4870600 0 0 4420700 0 0 0 0 0 3615000 0 0 5064700 0 0 4623500 0 0 5666600 0 0 0 0 0 0 0 0 1121 2122 89 89 1360 1546 4320;4321;4322;4323;4324;4325 4542;4543;4544;4545;4546;4547;4548 4325 4548 20190902_JH_MUT_Ubi_3 8584 4325 4548 20190902_JH_MUT_Ubi_3 8584 4325 4548 20190902_JH_MUT_Ubi_3 8584 sp|Q9UHE8|STEA1_HUMAN 37 sp|Q9UHE8|STEA1_HUMAN sp|Q9UHE8|STEA1_HUMAN sp|Q9UHE8|STEA1_HUMAN Metalloreductase STEAP1 OS=Homo sapiens OX=9606 GN=STEAP1 PE=2 SV=1 1 64.2981 0.00726284 64.298 28.994 64.298 1 64.2981 0.00726284 64.298 1 M LEEDDYLHKDTGETSMLKRPVLLHLHQTAHA X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX NLEEDDYLHKDTGETSM(1)LK NLEEDDYLHKDTGETSM(64.3)LK 17 3 -0.72672 2501400 2501400 0 0 NaN 0 0 0 0 0 0 0 0 2501400 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2501400 0 0 1122 2127 37 37 3126 3573 10063 10599 10063 10599 20190902_JH_WT_Ubi_3 7674 10063 10599 20190902_JH_WT_Ubi_3 7674 10063 10599 20190902_JH_WT_Ubi_3 7674 sp|Q9UHI5|LAT2_HUMAN;sp|Q9UHI5-3|LAT2_HUMAN;sp|Q9UHI5-2|LAT2_HUMAN;sp|Q9UHI5-4|LAT2_HUMAN 511;287;308;406 sp|Q9UHI5|LAT2_HUMAN sp|Q9UHI5|LAT2_HUMAN sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens OX=9606 GN=SLC7A8 PE=1 SV=1;sp|Q9UHI5-3|LAT2_HUMAN Isoform 3 of Large neutral amino acids transporter small subunit 2 OS=Homo sapiens OX=9606 GN=SLC7A8;sp|Q9UHI5-2|L 1 75.9557 4.78934E-44 172.3 155.83 75.956 1 96.7085 1.53873E-07 96.708 1 108.79 5.96924E-11 108.79 1 145.138 4.78934E-44 172.3 1 75.9557 5.07517E-05 78.451 1 130.192 2.86031E-16 130.19 1;2 M PEVERGSGTEEANEDMEEQQQPMYQPTPTKD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP GSGTEEANEDM(1)EEQQQPM(1)YQPTPTKDK GSGTEEANEDM(75.96)EEQQQPM(75.96)YQPTPTKDK 11 3 -0.3988 16848000 485460 16363000 0 NaN 5101100 0 1578900 3070500 4318600 0 498420 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 485460 4615600 0 0 0 0 0 1578900 0 0 3070500 0 0 4318600 0 0 0 0 0 498420 0 0 0 0 0 0 0 1123 2129 511 511 1691 1926;1927;1928 5387;5388;5389;5390;5391;5392;5393;5394 5671;5672;5673;5674;5675;5676;5677;5678;5679 5394 5679 20190902_JH_EV_Ubi_3 5348 5388 5672 20190902_JH_EV_Ubi_2 5207 5388 5672 20190902_JH_EV_Ubi_2 5207 sp|Q9UHI5|LAT2_HUMAN;sp|Q9UHI5-3|LAT2_HUMAN;sp|Q9UHI5-2|LAT2_HUMAN;sp|Q9UHI5-4|LAT2_HUMAN 518;294;315;413 sp|Q9UHI5|LAT2_HUMAN sp|Q9UHI5|LAT2_HUMAN sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens OX=9606 GN=SLC7A8 PE=1 SV=1;sp|Q9UHI5-3|LAT2_HUMAN Isoform 3 of Large neutral amino acids transporter small subunit 2 OS=Homo sapiens OX=9606 GN=SLC7A8;sp|Q9UHI5-2|L 1 75.9557 4.78934E-44 172.3 155.83 75.956 1 96.7085 1.53873E-07 96.708 1 108.79 5.96924E-11 108.79 1 145.138 4.78934E-44 172.3 1 75.9557 5.07517E-05 78.451 1 130.192 2.86031E-16 130.19 2 M GTEEANEDMEEQQQPMYQPTPTKDKDVAGQP X;X;X;X;X;X;X;X;Oxidation (M);X;X;Deamidation (NQ);Deamidation (NQ);X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPXXXXXX GSGTEEANEDM(1)EEQQQPM(1)YQPTPTKDK GSGTEEANEDM(75.96)EEQQQPM(75.96)YQPTPTKDK 18 3 -0.3988 16363000 0 16363000 0 NaN 4615600 0 1578900 3070500 4318600 0 498420 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 4615600 0 0 0 0 0 1578900 0 0 3070500 0 0 4318600 0 0 0 0 0 498420 0 0 0 0 0 0 0 1124 2129 518 518 1691 1926;1927;1928 5387;5388;5389;5390;5391;5393;5394 5671;5672;5673;5674;5675;5676;5678;5679 5394 5679 20190902_JH_EV_Ubi_3 5348 5388 5672 20190902_JH_EV_Ubi_2 5207 5388 5672 20190902_JH_EV_Ubi_2 5207 sp|Q9UHX1-4|PUF60_HUMAN;sp|Q9UHX1-6|PUF60_HUMAN;sp|Q9UHX1-2|PUF60_HUMAN;sp|Q9UHX1-3|PUF60_HUMAN;sp|Q9UHX1-5|PUF60_HUMAN;sp|Q9UHX1|PUF60_HUMAN 247;261;290;264;278;307 sp|Q9UHX1-4|PUF60_HUMAN sp|Q9UHX1-4|PUF60_HUMAN sp|Q9UHX1-4|PUF60_HUMAN Isoform 4 of Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens OX=9606 GN=PUF60;sp|Q9UHX1-6|PUF60_HUMAN Isoform 6 of Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens OX=9606 GN=PUF60;sp|Q9UHX1-2|PUF60_HUMAN Isoform 2 of Pol 1 72.0284 6.43445E-05 72.028 42.425 72.028 1 66.0144 0.000147194 66.014 1 72.0284 6.43445E-05 72.028 1 M LGGQYLRVGKAVTPPMPLLTPATPGGLPPAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPPPPP AVTPPM(1)PLLTPATPGGLPPAAAVAAAAATAK AVTPPM(72.03)PLLTPATPGGLPPAAAVAAAAATAK 6 3 -0.82606 3649700 3649700 0 0 1.4232 0 0 0 0 0 0 0 1772800 1876900 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1772800 0 0 1876900 0 0 1125 2136 247 247 331 390 1111;1112 1198;1199 1112 1199 20190902_JH_WT_Ubi_3 14967 1112 1199 20190902_JH_WT_Ubi_3 14967 1112 1199 20190902_JH_WT_Ubi_3 14967 sp|Q9UHX3-5|AGRE2_HUMAN;sp|Q9UHX3-4|AGRE2_HUMAN;sp|Q9UHX3-6|AGRE2_HUMAN;sp|Q9UHX3-3|AGRE2_HUMAN;sp|Q9UHX3-2|AGRE2_HUMAN;sp|Q9UHX3|AGRE2_HUMAN 663;712;747;756;794;805 sp|Q9UHX3-5|AGRE2_HUMAN sp|Q9UHX3-5|AGRE2_HUMAN sp|Q9UHX3-5|AGRE2_HUMAN Isoform 5 of Adhesion G protein-coupled receptor E2 OS=Homo sapiens OX=9606 GN=ADGRE2;sp|Q9UHX3-4|AGRE2_HUMAN Isoform 4 of Adhesion G protein-coupled receptor E2 OS=Homo sapiens OX=9606 GN=ADGRE2;sp|Q9UHX3-6|AGRE2_HUMAN Isoform 6 of 1 68.2608 0.0145186 68.261 46.42 68.261 1 68.2608 0.0145186 68.261 1 M GKWSKGIRKLKTESEMHTLSSSAKADTSKPS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPPPPPPPPXX TESEM(1)HTLSSSAKADTSK TESEM(68.26)HTLSSSAKADTSK 5 3 -0.12554 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1126 2137 663 663 4321 4903 13686 14357 13686 14357 20190902_JH_WT_Ubi_2 4328 13686 14357 20190902_JH_WT_Ubi_2 4328 13686 14357 20190902_JH_WT_Ubi_2 4328 sp|Q9UJX3-2|APC7_HUMAN;sp|Q9UJX3|APC7_HUMAN 63;63 sp|Q9UJX3-2|APC7_HUMAN sp|Q9UJX3-2|APC7_HUMAN sp|Q9UJX3-2|APC7_HUMAN Isoform 2 of Anaphase-promoting complex subunit 7 OS=Homo sapiens OX=9606 GN=ANAPC7;sp|Q9UJX3|APC7_HUMAN Anaphase-promoting complex subunit 7 OS=Homo sapiens OX=9606 GN=ANAPC7 PE=1 SV=4 1 45.3473 0.0175198 45.347 12.22 45.347 1 45.3473 0.0175198 45.347 1 M GLHSNVRLLSSLLLTMSNNNPELFSPPQKYQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;GlyGly (K);X;X XXXXXXXPPPPPPPPPPPPPPPPPPPPPPXX LLSSLLLTM(1)SNNNPELFSPPQK LLSSLLLTM(45.35)SNNNPELFSPPQK 9 3 -0.95668 1947400 1947400 0 0 NaN 0 1947400 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1947400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1127 2146 63 63 2707 3078 8793 9248 8793 9248 20190821_JH_MUT_Ubi 10610 8793 9248 20190821_JH_MUT_Ubi 10610 8793 9248 20190821_JH_MUT_Ubi 10610 sp|Q9UKM9-2|RALY_HUMAN;sp|Q9UKM9|RALY_HUMAN 89;89 sp|Q9UKM9-2|RALY_HUMAN sp|Q9UKM9-2|RALY_HUMAN sp|Q9UKM9-2|RALY_HUMAN Isoform 1 of RNA-binding protein Raly OS=Homo sapiens OX=9606 GN=RALY;sp|Q9UKM9|RALY_HUMAN RNA-binding protein Raly OS=Homo sapiens OX=9606 GN=RALY PE=1 SV=1 1 50.3923 0.0110794 50.392 25.499 50.392 1 50.3923 0.0110794 50.392 1 M GENGRVLAGQTLDINMAGEPKPDRPKGLKRA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPPPPPPPXXXXX VLAGQTLDINM(1)AGEPKPDRPK VLAGQTLDINM(50.39)AGEPKPDRPK 11 4 0.83684 2249900 2249900 0 0 NaN 2249900 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 2249900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1128 2154 89 89 4883 5543 15692 16493 15692 16493 20190821_JH_EV_Ubi 6094 15692 16493 20190821_JH_EV_Ubi 6094 15692 16493 20190821_JH_EV_Ubi 6094 sp|Q9UKY7|CDV3_HUMAN;sp|Q9UKY7-2|CDV3_HUMAN;sp|Q9UKY7-3|CDV3_HUMAN 164;164;62 sp|Q9UKY7|CDV3_HUMAN sp|Q9UKY7|CDV3_HUMAN sp|Q9UKY7|CDV3_HUMAN Protein CDV3 homolog OS=Homo sapiens OX=9606 GN=CDV3 PE=1 SV=1;sp|Q9UKY7-2|CDV3_HUMAN Isoform 2 of Protein CDV3 homolog OS=Homo sapiens OX=9606 GN=CDV3;sp|Q9UKY7-3|CDV3_HUMAN Isoform 3 of Protein CDV3 homolog OS=Homo sapiens OX=9606 GN 1 48.8543 0.0093526 48.854 34.217 48.854 1 48.8543 0.0093526 48.854 1 M APPAPVIVTETPEPAMTSGVYRPPGARLTTT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPXXXX TAPVQAPPAPVIVTETPEPAM(1)TSGVYRPPGAR TAPVQAPPAPVIVTETPEPAM(48.85)TSGVYRPPGAR 21 3 0.37759 4716100 4716100 0 0 NaN 0 0 0 0 0 0 0 0 4716100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4716100 0 0 1129 2157 164 164 4261 4838 13495 14159 13495 14159 20190902_JH_WT_Ubi_3 11375 13495 14159 20190902_JH_WT_Ubi_3 11375 13495 14159 20190902_JH_WT_Ubi_3 11375 sp|Q9UL19-2|HRSL4_HUMAN;sp|Q9UL19|HRSL4_HUMAN 99;99 sp|Q9UL19-2|HRSL4_HUMAN sp|Q9UL19-2|HRSL4_HUMAN sp|Q9UL19-2|HRSL4_HUMAN Isoform 2 of Retinoic acid receptor responder protein 3 OS=Homo sapiens OX=9606 GN=RARRES3;sp|Q9UL19|HRSL4_HUMAN Retinoic acid receptor responder protein 3 OS=Homo sapiens OX=9606 GN=RARRES3 PE=1 SV=1 1 74.7892 0.0053266 74.789 38.198 74.789 1 74.7892 0.0053266 74.789 1 M YQPRPVEVIISSAKEMVGQKMKYSIVSRNCE X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPPPPPXXXXXXXXXXX PVEVIISSAKEM(1)VGQK PVEVIISSAKEM(74.79)VGQK 12 3 -0.23366 1388200 1388200 0 0 0.50013 0 0 0 0 0 0 1388200 0 0 NaN 0 NaN NaN NaN 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1388200 0 0 0 0 0 0 0 0 1130 2158 99 99 3544 4041 11383 11956 11383 11956 20190902_JH_MUT_Ubi_3 7563 11383 11956 20190902_JH_MUT_Ubi_3 7563 11383 11956 20190902_JH_MUT_Ubi_3 7563 sp|Q9ULC4-2|MCTS1_HUMAN;sp|Q9ULC4|MCTS1_HUMAN;sp|Q9ULC4-3|MCTS1_HUMAN 100;112;113 sp|Q9ULC4-2|MCTS1_HUMAN sp|Q9ULC4-2|MCTS1_HUMAN sp|Q9ULC4-2|MCTS1_HUMAN Isoform 2 of Malignant T-cell-amplified sequence 1 OS=Homo sapiens OX=9606 GN=MCTS1;sp|Q9ULC4|MCTS1_HUMAN Malignant T-cell-amplified sequence 1 OS=Homo sapiens OX=9606 GN=MCTS1 PE=1 SV=1;sp|Q9ULC4-3|MCTS1_HUMAN Isoform 3 of Malignan 1 124.195 3.34086E-08 124.2 55.52 124.2 1 124.195 3.34086E-08 124.2 1 M VDKGAIKFVLSGANIMCPGLTSPGAKLYPAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPPPPPPPPPPXXXXX FVLSGANIM(1)CPGLTSPGAK FVLSGANIM(124.2)CPGLTSPGAK 9 2 1.2382 2046400 2046400 0 0 NaN 0 0 2046400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2046400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1131 2161 100 100 1328 1504 4186 4398 4186 4398 20190821_JH_WT_Ubi 10375 4186 4398 20190821_JH_WT_Ubi 10375 4186 4398 20190821_JH_WT_Ubi 10375 sp|Q9ULI0-2|ATD2B_HUMAN;sp|Q9ULI0|ATD2B_HUMAN 533;533 sp|Q9ULI0-2|ATD2B_HUMAN sp|Q9ULI0-2|ATD2B_HUMAN sp|Q9ULI0-2|ATD2B_HUMAN Isoform 2 of ATPase family AAA domain-containing protein 2B OS=Homo sapiens OX=9606 GN=ATAD2B;sp|Q9ULI0|ATD2B_HUMAN ATPase family AAA domain-containing protein 2B OS=Homo sapiens OX=9606 GN=ATAD2B PE=1 SV=3 1 54.0577 0.0176271 54.058 8.7008 54.058 1 54.0577 0.0176271 54.058 1 M QDQIHSSIVSTLLALMDGLDNRGEIVVIGAT X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX QDQIHSSIVSTLLALM(1)DGLDNR QDQIHSSIVSTLLALM(54.06)DGLDNR 16 3 2.1077 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1132 2164 533 533 3612 4121 11610 12187 11610 12187 20190902_JH_WT_Ubi_3 10600 11610 12187 20190902_JH_WT_Ubi_3 10600 11610 12187 20190902_JH_WT_Ubi_3 10600 sp|Q9ULI3|HEG1_HUMAN 1292 sp|Q9ULI3|HEG1_HUMAN sp|Q9ULI3|HEG1_HUMAN sp|Q9ULI3|HEG1_HUMAN Protein HEG homolog 1 OS=Homo sapiens OX=9606 GN=HEG1 PE=1 SV=3 1 73.8334 2.07934E-10 143.97 93.985 73.833 1 90.7254 0.0022698 90.725 1 143.973 2.07934E-10 143.97 1 69.4849 0.00791502 69.485 1 134.25 1.43063E-08 134.25 1 113.654 2.80041E-05 113.65 1 73.8334 0.00462088 73.833 1 M KNDISKLIFKSGDFQMSPYAEYPKNPRSQEW X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPPPXXXX SGDFQM(1)SPYAEYPKNPR SGDFQM(73.83)SPYAEYPKNPR 6 3 -0.22282 13986000 13986000 0 0 NaN 0 1140400 0 3989700 1658300 2601000 1189100 0 3407100 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1140400 0 0 0 0 0 3989700 0 0 1658300 0 0 2601000 0 0 1189100 0 0 0 0 0 3407100 0 0 1133 2165 1292 1292 3914 4444 12374;12375;12376;12377;12378;12379 12978;12979;12980;12981;12982;12983 12379 12983 20190902_JH_WT_Ubi_3 7590 12374 12978 20190902_JH_EV_Ubi_2 6486 12374 12978 20190902_JH_EV_Ubi_2 6486 sp|Q9UM01|YLAT1_HUMAN 1 sp|Q9UM01|YLAT1_HUMAN sp|Q9UM01|YLAT1_HUMAN sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC7A7 PE=1 SV=2 1 109.687 1.57482E-40 158.47 135.44 109.69 1 49.6539 6.11327E-13 100.86 1 158.471 1.57482E-40 158.47 1 72.8223 7.67798E-06 72.822 1 60.5268 9.20054E-05 60.527 1 92.9008 1.54537E-09 92.901 1 137.309 6.46708E-33 137.31 1 45.6146 0.000217569 54.308 1 109.687 8.91477E-14 109.69 1 M _______________MVDSTEYEVASQPEVE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK M(109.69)VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK 1 3 0.59561 136980000 136980000 0 0 4.1783 31676000 18729000 4252200 14127000 15068000 25179000 22463000 2801400 0 4.4401 1.5962 NaN NaN NaN 3.7054 3.1545 NaN NaN 31676000 0 0 18729000 0 0 4252200 0 0 14127000 0 0 15068000 0 0 25179000 0 0 22463000 0 0 2801400 0 0 0 0 0 1134 2171 1 1 2977 3396 9600;9601;9602;9603;9604;9605;9606;9607;9608;9609 10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114 9609 10114 20190902_JH_WT_Ubi_2 13289 9604 10108 20190821_JH_MUT_Ubi 11249 9604 10108 20190821_JH_MUT_Ubi 11249 sp|Q9UP95-5|S12A4_HUMAN;sp|Q9UP95-2|S12A4_HUMAN;sp|Q9UP95-6|S12A4_HUMAN;sp|Q9UP95|S12A4_HUMAN;sp|Q9UP95-7|S12A4_HUMAN;sp|Q9UP95-3|S12A4_HUMAN 959;990;984;990;992;990 sp|Q9UP95-5|S12A4_HUMAN sp|Q9UP95-5|S12A4_HUMAN sp|Q9UP95-5|S12A4_HUMAN Isoform 5 of Solute carrier family 12 member 4 OS=Homo sapiens OX=9606 GN=SLC12A4;sp|Q9UP95-2|S12A4_HUMAN Isoform 2 of Solute carrier family 12 member 4 OS=Homo sapiens OX=9606 GN=SLC12A4;sp|Q9UP95-6|S12A4_HUMAN Isoform 6 of Solute 1 65.1068 0.00857837 65.107 35.752 65.107 1 65.1068 0.00857837 65.107 1 M VGADKIQMTWTRDKYMTETWDPSHAPDNFRE X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPX DKYM(1)TETWDPSHAPDNFR DKYM(65.11)TETWDPSHAPDNFR 4 3 -0.73274 1032100 1032100 0 0 NaN 0 0 0 1032100 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 1032100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1135 2183 959 959 562 647 1795 1904;1905 1795 1905 20190902_JH_EV_Ubi_2 7800 1795 1905 20190902_JH_EV_Ubi_2 7800 1795 1905 20190902_JH_EV_Ubi_2 7800 sp|Q9UPQ0-9|LIMC1_HUMAN;sp|Q9UPQ0-8|LIMC1_HUMAN;sp|Q9UPQ0-6|LIMC1_HUMAN;sp|Q9UPQ0-5|LIMC1_HUMAN;sp|Q9UPQ0-10|LIMC1_HUMAN;sp|Q9UPQ0-2|LIMC1_HUMAN;sp|Q9UPQ0-4|LIMC1_HUMAN;sp|Q9UPQ0|LIMC1_HUMAN;sp|Q9UPQ0-3|LIMC1_HUMAN 351;358;363;346;517;517;505;517;902 sp|Q9UPQ0-9|LIMC1_HUMAN sp|Q9UPQ0-9|LIMC1_HUMAN sp|Q9UPQ0-9|LIMC1_HUMAN Isoform 9 of LIM and calponin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=LIMCH1;sp|Q9UPQ0-8|LIMC1_HUMAN Isoform 8 of LIM and calponin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=LIMCH1;sp|Q 1 48.371 0.0245195 48.371 7.0234 48.371 1 48.371 0.0245195 48.371 1 M TVETTIARASVLDTSMSAGSGSPSKTVTPKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPPPPPPPPX ASVLDTSM(1)SAGSGSPSKTVTPK ASVLDTSM(48.37)SAGSGSPSKTVTPK 8 3 -0.028269 672790 672790 0 0 NaN 0 0 0 0 0 0 672790 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 672790 0 0 0 0 0 0 0 0 1136 2187 351 351 285 335 980 1063 980 1063 20190902_JH_MUT_Ubi_3 5790 980 1063 20190902_JH_MUT_Ubi_3 5790 980 1063 20190902_JH_MUT_Ubi_3 5790 sp|Q9UQ35|SRRM2_HUMAN 2199 sp|Q9UQ35|SRRM2_HUMAN sp|Q9UQ35|SRRM2_HUMAN sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2 1 66.4672 0.000327151 76.156 45.666 66.467 1 76.1557 0.000327151 76.156 1 66.4672 0.00186991 66.467 1 M ALTAISLGTARPPPSMSAAGLAARMSQVPAP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPXXXXXXX IALALTAISLGTARPPPSM(1)SAAGLAAR IALALTAISLGTARPPPSM(66.47)SAAGLAAR 19 3 0.85428 6866400 6866400 0 0 2.364 0 0 0 0 0 0 0 2707700 4158600 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2707700 0 0 4158600 0 0 1137 2192 2199 2199 2066 2362 6862;6863 7225;7226 6863 7226 20190902_JH_WT_Ubi_3 12791 6862 7225 20190902_JH_WT_Ubi_2 13283 6862 7225 20190902_JH_WT_Ubi_2 13283 sp|Q9UQE7|SMC3_HUMAN 912 sp|Q9UQE7|SMC3_HUMAN sp|Q9UQE7|SMC3_HUMAN sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens OX=9606 GN=SMC3 PE=1 SV=2 1 55.3305 0.0135282 55.33 16.913 55.33 1 55.3305 0.0135282 55.33 2 M LQKSMERWKNMEKEHMDAINHDTKELEKMTN X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP EHM(1)DAINHDTKELEKM(1)TNR EHM(55.33)DAINHDTKELEKM(55.33)TNR 3 3 3.6379 2303300 0 2303300 0 NaN 0 2303300 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 2303300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1138 2195 912 912 924 1045 2928 3081 2928 3081 20190821_JH_MUT_Ubi 11355 2928 3081 20190821_JH_MUT_Ubi 11355 2928 3081 20190821_JH_MUT_Ubi 11355 sp|Q9UQE7|SMC3_HUMAN 925 sp|Q9UQE7|SMC3_HUMAN sp|Q9UQE7|SMC3_HUMAN sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens OX=9606 GN=SMC3 PE=1 SV=2 1 55.3305 0.0135282 55.33 16.913 55.33 1 55.3305 0.0135282 55.33 2 M EHMDAINHDTKELEKMTNRQGMLLKKKEECM X;X;Oxidation (M);X;X;X;Deamidation (NQ);X;X;X;X;X;X;X;GlyGly (K);Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX EHM(1)DAINHDTKELEKM(1)TNR EHM(55.33)DAINHDTKELEKM(55.33)TNR 16 3 3.6379 2303300 0 2303300 0 NaN 0 2303300 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 2303300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1139 2195 925 925 924 1045 2928 3081 2928 3081 20190821_JH_MUT_Ubi 11355 2928 3081 20190821_JH_MUT_Ubi 11355 2928 3081 20190821_JH_MUT_Ubi 11355 sp|Q9Y230-2|RUVB2_HUMAN;sp|Q9Y230|RUVB2_HUMAN 123;168 sp|Q9Y230-2|RUVB2_HUMAN sp|Q9Y230-2|RUVB2_HUMAN sp|Q9Y230-2|RUVB2_HUMAN Isoform 2 of RuvB-like 2 OS=Homo sapiens OX=9606 GN=RUVBL2;sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 OS=Homo sapiens OX=9606 GN=RUVBL2 PE=1 SV=3 1 58.2739 0.0237874 58.274 38.959 58.274 1 58.2739 0.0237874 58.274 M GTGSKVGKLTLKTTEMETIYDLGTKMIESLT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPXXXXXX TTEM(1)ETIYDLGTK TTEM(58.27)ETIYDLGTK 4 2 1.3042 715960 715960 0 0 NaN 0 0 0 0 715960 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 715960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1140 2197 123 123 4620 5244 14770 15520 14770 15520 20190902_JH_EV_Ubi_3 8312 14770 15520 20190902_JH_EV_Ubi_3 8312 14770 15520 20190902_JH_EV_Ubi_3 8312 sp|Q9Y263|PLAP_HUMAN 459 sp|Q9Y263|PLAP_HUMAN sp|Q9Y263|PLAP_HUMAN sp|Q9Y263|PLAP_HUMAN Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2 1 94.8373 5.76814E-07 94.837 47.445 94.837 1 40.7557 0.0271673 40.756 1 94.8373 5.76814E-07 94.837 1 M LDQVAKFIIDNTKGQMLGLGNPSFSDPFTGG X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPPPPP FIIDNTKGQM(1)LGLGNPSFSDPFTGGGR FIIDNTKGQM(94.84)LGLGNPSFSDPFTGGGR 10 3 -3.419 5461700 5461700 0 0 3.1288 0 0 0 0 0 0 3045200 2416600 0 NaN 0 NaN NaN NaN 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3045200 0 0 2416600 0 0 0 0 0 1141 2200 459 459 1222 1379 3874;3875 4077;4078 3875 4078 20190902_JH_WT_Ubi_2 13919 3875 4078 20190902_JH_WT_Ubi_2 13919 3875 4078 20190902_JH_WT_Ubi_2 13919 sp|Q9Y277|VDAC3_HUMAN;sp|Q9Y277-2|VDAC3_HUMAN 26;26 sp|Q9Y277|VDAC3_HUMAN sp|Q9Y277|VDAC3_HUMAN sp|Q9Y277|VDAC3_HUMAN Voltage-dependent anion-selective channel protein 3 OS=Homo sapiens OX=9606 GN=VDAC3 PE=1 SV=1;sp|Q9Y277-2|VDAC3_HUMAN Isoform 2 of Voltage-dependent anion-selective channel protein 3 OS=Homo sapiens OX=9606 GN=VDAC3 1 122.326 0.000220865 122.33 81.084 122.33 1 103.439 0.00216731 103.44 1 89.1886 0.00552083 89.189 1 109.721 0.000989381 109.72 1 80.1699 0.01052 80.17 1 77.7403 0.0120661 77.74 1 92.1898 0.00475423 92.19 1 97.9573 0.00328105 97.957 1 122.326 0.000220865 122.33 1 M GKAAKDVFNKGYGFGMVKIDLKTKSCSGVEF X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPXXXXXXXXXXXXX DVFNKGYGFGM(1)VK DVFNKGYGFGM(122.33)VK 11 3 -0.44115 45036000 45036000 0 0 NaN 0 2367500 5196500 3320300 3427500 5853500 5360200 9901000 9609700 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 2367500 0 0 5196500 0 0 3320300 0 0 3427500 0 0 5853500 0 0 5360200 0 0 9901000 0 0 9609700 0 0 1142 2202 26 26 730 830 2307;2308;2309;2310;2311;2312;2313;2314 2435;2436;2437;2438;2439;2440;2441;2442 2314 2442 20190902_JH_WT_Ubi_3 9463 2314 2442 20190902_JH_WT_Ubi_3 9463 2314 2442 20190902_JH_WT_Ubi_3 9463 sp|Q9Y279-2|VSIG4_HUMAN;sp|Q9Y279|VSIG4_HUMAN 159;159 sp|Q9Y279-2|VSIG4_HUMAN sp|Q9Y279-2|VSIG4_HUMAN sp|Q9Y279-2|VSIG4_HUMAN Isoform 2 of V-set and immunoglobulin domain-containing protein 4 OS=Homo sapiens OX=9606 GN=VSIG4;sp|Q9Y279|VSIG4_HUMAN V-set and immunoglobulin domain-containing protein 4 OS=Homo sapiens OX=9606 GN=VSIG4 PE=1 SV=1 1 49.3261 0.0166289 49.326 13.353 49.326 1 49.3261 0.0166289 49.326 1 M TVTTGSGYGFTVPQGMRISLQCQARGSPPIS X;X;X;X;X;X;X;X;X;X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX LSVSKPTVTTGSGYGFTVPQGM(1)R LSVSKPTVTTGSGYGFTVPQGM(49.33)R 22 3 -4.3593 783250 783250 0 0 NaN 0 0 0 0 783250 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 783250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1143 2203 159 159 2819 3195 9066 9538 9066 9538 20190902_JH_EV_Ubi_3 7852 9066 9538 20190902_JH_EV_Ubi_3 7852 9066 9538 20190902_JH_EV_Ubi_3 7852 sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN;sp|Q9Y2Q3-4|GSTK1_HUMAN 184;196;252;153 sp|Q9Y2Q3-3|GSTK1_HUMAN sp|Q9Y2Q3-3|GSTK1_HUMAN sp|Q9Y2Q3-3|GSTK1_HUMAN Isoform 3 of Glutathione S-transferase kappa 1 OS=Homo sapiens OX=9606 GN=GSTK1;sp|Q9Y2Q3|GSTK1_HUMAN Glutathione S-transferase kappa 1 OS=Homo sapiens OX=9606 GN=GSTK1 PE=1 SV=3;sp|Q9Y2Q3-2|GSTK1_HUMAN Isoform 2 of Glutathione S-tr 1 45.9917 0.0122369 45.992 30.696 45.992 1 45.9917 0.0122369 45.992 1 M FGLPITVAHVDGQTHMLFGSDRMELLAHLLG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX YGAFGLPITVAHVDGQTHM(1)LFGSDR YGAFGLPITVAHVDGQTHM(45.99)LFGSDR 19 4 -0.066083 27590000 27590000 0 0 1.4075 0 0 27590000 0 0 0 0 0 0 NaN NaN 1.4075 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 27590000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1144 2210 184 184 5134 5838 16567 17412 16567 17412 20190821_JH_WT_Ubi 11445 16567 17412 20190821_JH_WT_Ubi 11445 16567 17412 20190821_JH_WT_Ubi 11445 sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN;sp|Q9Y2Q3-4|GSTK1_HUMAN 48;48;48;48 sp|Q9Y2Q3-3|GSTK1_HUMAN sp|Q9Y2Q3-3|GSTK1_HUMAN sp|Q9Y2Q3-3|GSTK1_HUMAN Isoform 3 of Glutathione S-transferase kappa 1 OS=Homo sapiens OX=9606 GN=GSTK1;sp|Q9Y2Q3|GSTK1_HUMAN Glutathione S-transferase kappa 1 OS=Homo sapiens OX=9606 GN=GSTK1 PE=1 SV=3;sp|Q9Y2Q3-2|GSTK1_HUMAN Isoform 2 of Glutathione S-tr 1 105.06 2.77873E-06 105.06 83.662 105.06 1 105.06 2.77873E-06 105.06 1 M WNINLQLRPSLITGIMKDSGNKPPGLLPRKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX YQNIWNINLQLRPSLITGIM(1)K YQNIWNINLQLRPSLITGIM(105.06)K 20 3 -0.4714 8890200 8890200 0 0 NaN 0 0 8890200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 8890200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1145 2210 48 48 5195 5913 16769 17628 16769 17628 20190821_JH_WT_Ubi 13702 16769 17628 20190821_JH_WT_Ubi 13702 16769 17628 20190821_JH_WT_Ubi 13702 sp|Q9Y2Z2-3|MTO1_HUMAN;sp|Q9Y2Z2-2|MTO1_HUMAN;sp|Q9Y2Z2-4|MTO1_HUMAN;sp|Q9Y2Z2|MTO1_HUMAN;sp|Q9Y2Z2-6|MTO1_HUMAN 75;75;75;75;75 sp|Q9Y2Z2-3|MTO1_HUMAN sp|Q9Y2Z2-3|MTO1_HUMAN sp|Q9Y2Z2-3|MTO1_HUMAN Isoform 2 of Protein MTO1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=MTO1;sp|Q9Y2Z2-2|MTO1_HUMAN Isoform 1 of Protein MTO1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=MTO1;sp|Q9Y2Z2-4|MTO1_HUMAN Isoform 5 of Protein MTO1 0.999997 55.5404 0.0076013 58.082 13.692 58.082 0.999997 55.5404 0.0076013 58.082 1 M SRTLLLTHRVDTIGQMSCNPSFGGIGKGHLM X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPPPPPPP VDTIGQM(1)SCNPSFGGIGKGHLMR VDTIGQM(55.54)SCNPSFGGIGKGHLM(-55.54)R 7 3 -1.1252 3674000 3674000 0 0 NaN 0 0 0 0 0 0 0 0 3674000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3674000 0 0 1146 2214 75 75 4759 5402 15264 16035 15264 16035 20190902_JH_WT_Ubi_3 12708 15264 16035 20190902_JH_WT_Ubi_3 12708 15264 16035 20190902_JH_WT_Ubi_3 12708 sp|Q9Y2Z4|SYYM_HUMAN 333 sp|Q9Y2Z4|SYYM_HUMAN sp|Q9Y2Z4|SYYM_HUMAN sp|Q9Y2Z4|SYYM_HUMAN Tyrosine--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=YARS2 PE=1 SV=2 1 65.5112 0.00375415 65.511 34.975 65.511 1 49.2228 0.0170681 49.223 1 49.3429 0.016875 49.343 1 65.5112 0.00375415 65.511 1 M LKLFTFLPLPEIDHIMQLHVKEPERRGPQKR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPPPPXXXXXXXXXX LFTFLPLPEIDHIM(1)QLHVK LFTFLPLPEIDHIM(65.51)QLHVK 14 4 -0.42531 21044000 21044000 0 0 NaN 0 0 0 0 0 0 1757000 7318700 11968000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1757000 0 0 7318700 0 0 11968000 0 0 1147 2215 333 333 2598 2952 8424;8425;8426 8857;8858;8859 8426 8859 20190902_JH_WT_Ubi_3 14278 8426 8859 20190902_JH_WT_Ubi_3 14278 8426 8859 20190902_JH_WT_Ubi_3 14278 sp|Q9Y3I1-3|FBX7_HUMAN;sp|Q9Y3I1-2|FBX7_HUMAN;sp|Q9Y3I1|FBX7_HUMAN 299;334;413 sp|Q9Y3I1-3|FBX7_HUMAN sp|Q9Y3I1-3|FBX7_HUMAN sp|Q9Y3I1-3|FBX7_HUMAN Isoform 3 of F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7;sp|Q9Y3I1-2|FBX7_HUMAN Isoform 2 of F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7;sp|Q9Y3I1|FBX7_HUMAN F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7 P 1 85.5632 5.27954E-05 85.563 63.188 85.563 1 79.3106 0.000213972 79.311 1 69.9345 0.00113028 69.935 1 85.5632 5.27954E-05 85.563 1 M KRHIQRKESPKGRFVMLLPSSTHTIPFYPNP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP FVM(1)LLPSSTHTIPFYPNPLHPR FVM(85.56)LLPSSTHTIPFYPNPLHPR 3 4 1.3728 6713500 6713500 0 0 1.1845 0 0 0 0 0 0 1626400 2235100 2852000 NaN NaN 0 NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1626400 0 0 2235100 0 0 2852000 0 0 1148 2225 299 299 1330 1506 4190;4191;4192 4402;4403;4404 4192 4404 20190902_JH_WT_Ubi_3 12650 4192 4404 20190902_JH_WT_Ubi_3 12650 4192 4404 20190902_JH_WT_Ubi_3 12650 sp|Q9Y487|VPP2_HUMAN 97 sp|Q9Y487|VPP2_HUMAN sp|Q9Y487|VPP2_HUMAN sp|Q9Y487|VPP2_HUMAN V-type proton ATPase 116 kDa subunit a isoform 2 OS=Homo sapiens OX=9606 GN=ATP6V0A2 PE=1 SV=2 1 44.4831 0.0145731 44.483 23.314 44.483 1 44.4831 0.0145731 44.483 1 M GEASPPAPPLKQVLEMQEQLQKLEVELREVT X;X;X;X;X;X;X;X;X;X;GlyGly (K);X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPXXXXXXXXX ADIPLPEGEASPPAPPLKQVLEM(1)QEQLQK ADIPLPEGEASPPAPPLKQVLEM(44.48)QEQLQK 23 3 -1.4625 1190700 1190700 0 0 0.54639 0 0 0 0 0 0 1190700 0 0 0 NaN NaN NaN NaN 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1190700 0 0 0 0 0 0 0 0 1149 2229 97 97 61 72 231 249 231 249 20190902_JH_MUT_Ubi_3 12156 231 249 20190902_JH_MUT_Ubi_3 12156 231 249 20190902_JH_MUT_Ubi_3 12156 sp|Q9Y490|TLN1_HUMAN 2399 sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3 1 56.4799 0.00404169 56.48 23.172 56.48 1 56.4799 0.00404169 56.48 1 M LDDGQWSQGLISAARMVAAATNNLCEAANAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VAAATNNLCEAANAAVQGHASQEK M(56.48)VAAATNNLCEAANAAVQGHASQEK 1 3 1.2829 1904900 1904900 0 0 NaN 0 0 0 0 0 0 0 1904900 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1904900 0 0 0 0 0 1150 2230 2399 2399 2976 3395 9599 10103 9599 10103 20190902_JH_WT_Ubi_2 9087 9599 10103 20190902_JH_WT_Ubi_2 9087 9599 10103 20190902_JH_WT_Ubi_2 9087 sp|Q9Y490|TLN1_HUMAN 870 sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3 1 66.6061 0.00473023 66.606 30.577 66.606 1 66.6061 0.00473023 66.606 1 M KLLSAAKILADATAKMVEAAKGAAAHPDSEE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)VEAAKGAAAHPDSEEQQQR M(66.61)VEAAKGAAAHPDSEEQQQR 1 3 1.6005 398730 398730 0 0 NaN 0 0 0 0 398730 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 398730 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1151 2230 870 870 2978 3398 9614 10119 9614 10119 20190902_JH_EV_Ubi_3 3771 9614 10119 20190902_JH_EV_Ubi_3 3771 9614 10119 20190902_JH_EV_Ubi_3 3771 sp|Q9Y490|TLN1_HUMAN 468 sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3 1 126.471 9.50637E-21 126.47 89.727 126.47 1 53.5511 0.00187372 53.551 1 111.563 8.64174E-16 111.56 1 126.471 9.50637E-21 126.47 2 M MRSGASGPENFQVGSMPPAQQQITSGQMHRG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X XXPPPPPPPPPPPPPPPPPPPPPPPPPPPPX SGASGPENFQVGSM(1)PPAQQQITSGQM(1)HR SGASGPENFQVGSM(126.47)PPAQQQITSGQM(126.47)HR 14 3 -1.5821 7605000 0 7605000 0 NaN 701230 0 0 0 0 0 0 3404800 3499000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 701230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3404800 0 0 3499000 0 1152 2230 468 468 3912 4440 12362;12363;12364 12961;12962;12963 12364 12963 20190902_JH_WT_Ubi_3 8204 12364 12963 20190902_JH_WT_Ubi_3 8204 12364 12963 20190902_JH_WT_Ubi_3 8204 sp|Q9Y490|TLN1_HUMAN 480 sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3 1 126.471 9.50637E-21 126.47 89.727 126.47 1 53.5511 0.00187372 53.551 1 111.563 8.64174E-16 111.56 1 126.471 9.50637E-21 126.47 2 M VGSMPPAQQQITSGQMHRGHMPPLTSAQQAL X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPXXXXXXXXXXXXX SGASGPENFQVGSM(1)PPAQQQITSGQM(1)HR SGASGPENFQVGSM(126.47)PPAQQQITSGQM(126.47)HR 26 3 -1.5821 7605000 0 7605000 0 NaN 701230 0 0 0 0 0 0 3404800 3499000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 701230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3404800 0 0 3499000 0 1153 2230 480 480 3912 4440 12362;12363;12364 12961;12962;12963 12364 12963 20190902_JH_WT_Ubi_3 8204 12364 12963 20190902_JH_WT_Ubi_3 8204 12364 12963 20190902_JH_WT_Ubi_3 8204 sp|Q9Y490|TLN1_HUMAN 1734 sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3 1 75.0572 0.000526826 75.057 49.234 75.057 1 71.0007 0.00143889 71.001 1 73.9837 0.00785911 73.984 1 75.0572 0.000526826 75.057 1 M AARAEASQLGHKVSQMAQYFEPLTLAAVGAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPPPPPPPPPPP VSQM(1)AQYFEPLTLAAVGAASK VSQM(75.06)AQYFEPLTLAAVGAASK 4 3 -0.82344 3303500 3303500 0 0 NaN 0 0 1403000 0 0 0 0 693610 1206900 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693610 0 0 1206900 0 0 1154 2230 1734 1734 5015 5692 16112;16113;16114 16928;16929;16930 16114 16930 20190902_JH_WT_Ubi_3 14013 16114 16930 20190902_JH_WT_Ubi_3 14013 16114 16930 20190902_JH_WT_Ubi_3 14013 sp|Q9Y561-2|LRP12_HUMAN;sp|Q9Y561|LRP12_HUMAN 645;664 sp|Q9Y561-2|LRP12_HUMAN sp|Q9Y561-2|LRP12_HUMAN sp|Q9Y561-2|LRP12_HUMAN Isoform 2 of Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens OX=9606 GN=LRP12;sp|Q9Y561|LRP12_HUMAN Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens OX=9606 GN=LRP12 PE=1 SV=1 1 52.4797 0.000134563 52.48 32.028 52.48 1 52.4797 0.000134563 52.48 1 M SVESDDTDTENERRDMAGASGGVAAPLPQKV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K);X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP DM(1)AGASGGVAAPLPQKVPPTTAVEATVGACASSSTQSTR DM(52.48)AGASGGVAAPLPQKVPPTTAVEATVGACASSSTQSTR 2 3 1.3446 1237400 1237400 0 0 NaN 0 0 0 0 0 0 0 1237400 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1237400 0 0 0 0 0 1155 2237 645 645 614 704 1934 2052 1934 2052 20190902_JH_WT_Ubi_2 11903 1934 2052 20190902_JH_WT_Ubi_2 11903 1934 2052 20190902_JH_WT_Ubi_2 11903 sp|Q9Y5L4|TIM13_HUMAN 1 sp|Q9Y5L4|TIM13_HUMAN sp|Q9Y5L4|TIM13_HUMAN sp|Q9Y5L4|TIM13_HUMAN Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX=9606 GN=TIMM13 PE=1 SV=1 1 51.7258 5.47716E-05 76.21 44.175 51.726 1 74.1795 5.47716E-05 76.21 0.999999 61.5505 0.000381692 64.152 1 51.7258 0.0246961 51.726 1 51.7258 0.0248132 51.726 1 M _______________MEGGFGSDFGGSGSGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;GlyGly (K) XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EGGFGSDFGGSGSGK M(51.73)EGGFGSDFGGSGSGK 1 2 1.8602 5304700 5304700 0 0 NaN 0 0 0 0 0 740340 393280 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 740340 0 0 393280 0 0 0 0 0 0 0 0 1156 2244 1 1 2895;2896 3287;3288 9331;9332;9333;9334 9824;9825;9826;9827 9332 9825 20190902_JH_WT_Ubi_3 10883 9333 9826 20190902_JH_MUT_Ubi_2 14250 9333 9826 20190902_JH_MUT_Ubi_2 14250 sp|Q9Y5S2|MRCKB_HUMAN 1046 sp|Q9Y5S2|MRCKB_HUMAN sp|Q9Y5S2|MRCKB_HUMAN sp|Q9Y5S2|MRCKB_HUMAN Serine/threonine-protein kinase MRCK beta OS=Homo sapiens OX=9606 GN=CDC42BPB PE=1 SV=2 1 47.1128 0.0236463 47.113 17.772 47.113 1 47.1128 0.0236463 47.113 1 M KSFSSPTQCSHCTSLMVGLIRQGYACEVCSF X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XPPPPPPPPPPPPPPPPPPPPXXXXXXXXXX SFSSPTQCSHCTSLM(1)VGLIR SFSSPTQCSHCTSLM(47.11)VGLIR 15 3 0.37549 1276000 1276000 0 0 NaN 0 1276000 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1276000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1157 2245 1046 1046 3911 4439 12361 12960 12361 12960 20190821_JH_MUT_Ubi 7852 12361 12960 20190821_JH_MUT_Ubi 7852 12361 12960 20190821_JH_MUT_Ubi 7852 sp|Q9Y5S9-2|RBM8A_HUMAN;sp|Q9Y5S9|RBM8A_HUMAN 17;17 sp|Q9Y5S9-2|RBM8A_HUMAN sp|Q9Y5S9-2|RBM8A_HUMAN sp|Q9Y5S9-2|RBM8A_HUMAN Isoform 2 of RNA-binding protein 8A OS=Homo sapiens OX=9606 GN=RBM8A;sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens OX=9606 GN=RBM8A PE=1 SV=1 1 109.843 5.95709E-11 109.84 85.329 109.84 1 92.5652 5.83932E-07 92.565 1 109.843 5.95709E-11 109.84 1 M ADVLDLHEAGGEDFAMDEDGDESIHKLKEKA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX ADVLDLHEAGGEDFAM(1)DEDGDESIHK ADVLDLHEAGGEDFAM(109.84)DEDGDESIHK 16 3 1.1863 4179400 4179400 0 0 NaN 0 0 2243500 0 0 0 0 0 1935800 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 2243500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1935800 0 0 1158 2246 17 17 70 81 251;252 269;270 252 270 20190902_JH_WT_Ubi_3 12322 252 270 20190902_JH_WT_Ubi_3 12322 252 270 20190902_JH_WT_Ubi_3 12322 sp|Q9Y5S9-2|RBM8A_HUMAN;sp|Q9Y5S9|RBM8A_HUMAN 49;50 sp|Q9Y5S9-2|RBM8A_HUMAN sp|Q9Y5S9-2|RBM8A_HUMAN sp|Q9Y5S9-2|RBM8A_HUMAN Isoform 2 of RNA-binding protein 8A OS=Homo sapiens OX=9606 GN=RBM8A;sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens OX=9606 GN=RBM8A PE=1 SV=1 1 108.255 7.42726E-05 108.25 80.089 108.25 1 108.255 7.42726E-05 108.25 1 M KRKGRGFGSEGSRARMREDYDSVEQDGDEPG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)REDYDSVEQDGDEPGPQR M(108.25)REDYDSVEQDGDEPGPQR 1 3 0.77824 3531200 3531200 0 0 NaN 0 0 0 0 0 0 0 3531200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3531200 0 0 0 0 0 1159 2246 49 49 2965 3379 9565 10068 9565 10068 20190902_JH_WT_Ubi_2 6783 9565 10068 20190902_JH_WT_Ubi_2 6783 9565 10068 20190902_JH_WT_Ubi_2 6783 sp|Q9Y5X2|SNX8_HUMAN 386 sp|Q9Y5X2|SNX8_HUMAN sp|Q9Y5X2|SNX8_HUMAN sp|Q9Y5X2|SNX8_HUMAN Sorting nexin-8 OS=Homo sapiens OX=9606 GN=SNX8 PE=1 SV=1 1 59.1163 0.0173334 59.116 13.759 59.116 1 59.1163 0.0173334 59.116 M QLESRIVEQENAIQTMELRNYFSLYCLHQET X;X;X;X;X;X;X;X;Deamidation (NQ);X;X;X;X;Deamidation (NQ);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPXXXXXXXXXXXX IVEQENAIQTM(1)ELR IVEQENAIQTM(59.12)ELR 11 3 -1.2583 1187200 1187200 0 0 NaN 0 0 1187200 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 1187200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1160 2247 386 386 2290 2607 7529 7918 7529 7918 20190821_JH_WT_Ubi 9578 7529 7918 20190821_JH_WT_Ubi 9578 7529 7918 20190821_JH_WT_Ubi 9578 sp|Q9Y6C9|MTCH2_HUMAN 22 sp|Q9Y6C9|MTCH2_HUMAN sp|Q9Y6C9|MTCH2_HUMAN sp|Q9Y6C9|MTCH2_HUMAN Mitochondrial carrier homolog 2 OS=Homo sapiens OX=9606 GN=MTCH2 PE=1 SV=1 1 121.329 1.9709E-10 121.5 87.222 121.33 1 66.7109 0.000894175 66.711 1 121.496 1.9709E-10 121.5 1 106.354 0.000579829 106.35 1 121.329 2.16587E-10 121.33 1 M QVLLGSGLTILSQPLMYVKVLIQVGYEPLPP X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX ADAASQVLLGSGLTILSQPLM(1)YVK ADAASQVLLGSGLTILSQPLM(121.33)YVK 21 3 0.16582 2194100 2194100 0 0 NaN 490100 0 1102800 0 0 0 0 0 601230 NaN NaN NaN NaN NaN NaN NaN NaN NaN 490100 0 0 0 0 0 1102800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 601230 0 0 1161 2257 22 22 49 56 162;163;164;165 178;179;180;181 165 181 20190902_JH_WT_Ubi_3 16780 163 179 20190821_JH_WT_Ubi 16709 163 179 20190821_JH_WT_Ubi 16709 sp|Q9Y6I3-3|EPN1_HUMAN;sp|Q9Y6I3|EPN1_HUMAN;sp|Q9Y6I3-1|EPN1_HUMAN 100;100;211 sp|Q9Y6I3-3|EPN1_HUMAN sp|Q9Y6I3-3|EPN1_HUMAN sp|Q9Y6I3-3|EPN1_HUMAN Isoform 3 of Epsin-1 OS=Homo sapiens OX=9606 GN=EPN1;sp|Q9Y6I3|EPN1_HUMAN Epsin-1 OS=Homo sapiens OX=9606 GN=EPN1 PE=1 SV=2;sp|Q9Y6I3-1|EPN1_HUMAN Isoform 2 of Epsin-1 OS=Homo sapiens OX=9606 GN=EPN1 1 177.392 4.65803E-42 202.01 147.06 177.39 1 154.812 5.53897E-14 154.81 1 160.025 6.41424E-19 160.03 1 163.899 4.16371E-19 163.9 1 151.379 9.98404E-14 151.38 1 158.654 5.64791E-15 158.65 1 61.9621 1.5081E-19 168.47 1 166.523 2.6387E-19 166.52 1 202.015 4.65803E-42 202.01 1 177.392 1.24323E-25 177.39 1 M IKTGSERVSQQCKENMYAVQTLKDFQYVDRD X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;GlyGly (K);X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX ENM(1)YAVQTLKDFQYVDR ENM(177.39)YAVQTLKDFQYVDR 3 3 -0.085641 394610000 394610000 0 0 2.2293 32684000 39384000 58083000 16325000 26287000 75806000 49760000 50928000 45355000 2.4889 1.1558 1.3005 4.3907 NaN 2.4691 3.3754 2.7933 2.5556 32684000 0 0 39384000 0 0 58083000 0 0 16325000 0 0 26287000 0 0 75806000 0 0 49760000 0 0 50928000 0 0 45355000 0 0 1162 2260 100 100 1047 1177 3310;3311;3312;3313;3314;3315;3316;3317;3318;3319 3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490 3319 3489 20190902_JH_WT_Ubi_3 11173 3318 3488 20190902_JH_WT_Ubi_2 11652 3318 3488 20190902_JH_WT_Ubi_2 11652 sp|Q9Y6M7-5|S4A7_HUMAN;sp|Q9Y6M7-4|S4A7_HUMAN;sp|Q9Y6M7-3|S4A7_HUMAN;sp|Q9Y6M7-2|S4A7_HUMAN;sp|Q9Y6M7-9|S4A7_HUMAN;sp|Q9Y6M7-6|S4A7_HUMAN;sp|Q9Y6M7-13|S4A7_HUMAN;sp|Q9Y6M7-12|S4A7_HUMAN;sp|Q9Y6M7|S4A7_HUMAN;sp|Q9Y6M7-8|S4A7_HUMAN;sp|Q9Y6M7-7|S4A7_HUMAN 710;946;946;1036;1041;1041;1045;1152;1160;1156;1169 sp|Q9Y6M7-5|S4A7_HUMAN sp|Q9Y6M7-5|S4A7_HUMAN sp|Q9Y6M7-5|S4A7_HUMAN Isoform 5 of Sodium bicarbonate cotransporter 3 OS=Homo sapiens OX=9606 GN=SLC4A7;sp|Q9Y6M7-4|S4A7_HUMAN Isoform 4 of Sodium bicarbonate cotransporter 3 OS=Homo sapiens OX=9606 GN=SLC4A7;sp|Q9Y6M7-3|S4A7_HUMAN Isoform 3 of Sodium bic 1 48.6852 0.00599729 48.685 10.102 48.685 1 48.6852 0.00599729 48.685 1 M KEDDKKKKEKEEAERMLQDDDDTVHLPFEGG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)LQDDDDTVHLPFEGGSLLQIPVKALK M(48.69)LQDDDDTVHLPFEGGSLLQIPVKALK 1 4 1.7551 897250 897250 0 0 NaN 0 0 0 0 0 0 0 897250 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897250 0 0 0 0 0 1163 2262 710 710 2942 3344 9481 9981 9481 9981 20190902_JH_WT_Ubi_2 14750 9481 9981 20190902_JH_WT_Ubi_2 14750 9481 9981 20190902_JH_WT_Ubi_2 14750 sp|Q9Y6N5|SQOR_HUMAN 58 sp|Q9Y6N5|SQOR_HUMAN sp|Q9Y6N5|SQOR_HUMAN sp|Q9Y6N5|SQOR_HUMAN Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens OX=9606 GN=SQOR PE=1 SV=1 1 136.326 1.26586E-23 160.76 98.723 136.33 1 60.9384 0.00641965 60.938 1 160.764 1.26586E-23 160.76 1 152.012 2.48343E-18 152.01 1 139.462 1.21089E-13 139.46 1 136.849 1.62422E-13 136.85 1 136.326 1.70683E-13 136.33 1 M HYEVLVLGGGSGGITMAARMKRKVGAENVAI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX NHYEVLVLGGGSGGITM(1)AAR NHYEVLVLGGGSGGITM(136.33)AAR 17 3 1.6769 38759000 38759000 0 0 NaN 4795900 4407400 11209000 0 2942400 0 6106700 0 9298000 NaN NaN NaN NaN NaN NaN NaN NaN NaN 4795900 0 0 4407400 0 0 11209000 0 0 0 0 0 2942400 0 0 0 0 0 6106700 0 0 0 0 0 9298000 0 0 1164 2263 58 58 3081 3528 9957;9958;9959;9960;9961;9962 10489;10490;10491;10492;10493;10494 9962 10494 20190902_JH_WT_Ubi_3 10139 9959 10491 20190821_JH_MUT_Ubi 8289 9959 10491 20190821_JH_MUT_Ubi 8289