Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Deamidation (NQ)	GlyGly (K)	Oxidation (M)	Missed cleavages	Experiment 821_JH_EV_Ubi	Experiment 821_JH_MUT_Ubi	Experiment 821_JH_WT_Ubi	Experiment 902_JH_EV_Ubi_2	Experiment 902_JH_EV_Ubi_3	Experiment 902_JH_MUT_Ubi_2	Experiment 902_JH_MUT_Ubi_3	Experiment 902_JH_WT_Ubi_2	Experiment 902_JH_WT_Ubi_3	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Intensity	Intensity 821_JH_EV_Ubi	Intensity 821_JH_MUT_Ubi	Intensity 821_JH_WT_Ubi	Intensity 902_JH_EV_Ubi_2	Intensity 902_JH_EV_Ubi_3	Intensity 902_JH_MUT_Ubi_2	Intensity 902_JH_MUT_Ubi_3	Intensity 902_JH_WT_Ubi_2	Intensity 902_JH_WT_Ubi_3	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Deamidation (NQ) site IDs	GlyGly (K) site IDs	Oxidation (M) site IDs	MS/MS Count
AAAAAAALQAKSDEK	GlyGly (K)	1528.7845	0.7845345	786	sp|P36578|RL4_HUMAN	yes	yes	0	0	1	0	1						1		1		22.724	22.724	3	0.017744	5936	20190902_JH_WT_Ubi_2	62.162	20.779	3585500	0	0	0	0	0	2037900	0	1547600	0			0	786	0	0;1	0;1	1		768		2
AAAAAAVGPGAGGAGSAVPGGAGPCATVSVFPGAR	Acetyl (Protein N-term)	2948.4563	0.45628785	1563	sp|Q86X55-2|CARM1_HUMAN;sp|Q86X55-1|CARM1_HUMAN;sp|Q86X55|CARM1_HUMAN	yes	no	1	0	0	0	0	1		1	1	1	1		1		50.752	50.752	3	3.5477E-08	15232	20190902_JH_WT_Ubi_2	85.814	58.54	8908400	1651000	0	3457000	618740	1018700	882880	0	1280100	0			1	1563	1	2;3;4;5;6;7	2;3;4;5;6;7;8	8				7
AAAAAEQQQFYLLLGNLLSPDNVVR	Acetyl (Protein N-term)	2742.4341	0.43407907	124	sp|O00410|IPO5_HUMAN	yes	yes	1	0	0	0	0								1		61.734	61.734	3	3.1723E-10	17561	20190902_JH_WT_Ubi_2	104.81	69.775	876330	0	0	0	0	0	0	0	876330	0			2	124	2	8	9	9				1
AAAASAAEAGIATTGTEDSDDALLKMTISQQEFGR	Oxidation (M);GlyGly (K)	3626.7006	0.70061304	971	sp|P55036|PSMD4_HUMAN	yes	yes	0	0	1	1	1	1	2	2	1	1	1	1	2	2	42.765	42.765	3;4	2.3443E-25	11124	20190821_JH_WT_Ubi	130.53	105.91	46129000	4053100	7446800	12322000	981770	1285800	2530600	4083900	6683600	6741200			3	971	3	9;10;11;12;13;14;15;16;17;18;19;20;21	10;11;12;13;14;15;16;17;18;19;20;21;22;23;24	19		951	607	15
AAAASAAEAGIATTGTEDSDDALLKMTISQQEFGR	GlyGly (K)	3610.7057	0.70569842	971	sp|P55036|PSMD4_HUMAN	yes	yes	0	0	1	0	1	2	1	1				1		1	45.573	45.573	3;4	6.3736E-13	12033	20190902_JH_MUT_Ubi_3	103.4	80.869	32074000	9975000	4841600	13566000	0	0	0	1015100	0	2677000			4	971	3	22;23;24;25;26;27	25;26;27;28;29;30;31	29		951		7
AAAASAAEAGIATTGTEDSDDALLKMTISQQEFGR	GlyGly (K);Deamidation (NQ)	3611.6897	0.689714	971	sp|P55036|PSMD4_HUMAN	yes	yes	0	1	1	0	1						1				45.378	45.378	3	0.0014668	13215	20190902_JH_MUT_Ubi_2	57.328	38.144	1916500	0	0	0	0	0	1916500	0	0	0			5	971	3	28	32	32	948	951		1
AAAEEEPKPK	Acetyl (Protein N-term)	1110.5557	0.55570376	981	sp|P55263-3|ADK_HUMAN;sp|P55263|ADK_HUMAN	yes	no	1	0	0	0	1								1		21.2	21.2	2	0.019426	5362	20190902_JH_WT_Ubi_2	68.371	35.478	864580	0	0	0	0	0	0	0	864580	0			6	981	4	29	33	33				0
AAAHCAHVFTTVSQITAIEAQHLLK	Unmodified	2716.4119	0.41190384	549	sp|P13807-2|GYS1_HUMAN;sp|P13807|GYS1_HUMAN	yes	no	0	0	0	0	0			1					1	1	39.943	39.943	4	7.6697E-05	9991	20190821_JH_WT_Ubi	79.942	50.825	7472500	0	0	3850600	0	0	0	0	2002700	1619300			7	549	5	30;31;32	34;35;36	34				3
AAALSLSTLASPKGGSGTAGTEPSDIIIPLR	GlyGly (K)	3064.6404	0.64044303	1115	sp|P98172|EFNB1_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1	1	1	1	45.983	45.983	3	2.4613E-40	12117	20190902_JH_MUT_Ubi_3	165.79	122.27	230790000	3619900	19954000	73300000	0	0	16978000	20260000	46731000	49949000			8	1115	6	33;34;35;36;37;38;39	37;38;39;40;41;42;43;44;45;46	41		1110		10
AAAPAPEEEMDECEQALAAEPK	Oxidation (M)	2372.0148	0.014806305	691	sp|P26641|EF1G_HUMAN;sp|P26641-2|EF1G_HUMAN	yes	no	0	0	0	1	0								1	1	32.663	32.663	3	2.5605E-07	9366	20190902_JH_WT_Ubi_2	108.47	76.375	4619400	0	0	0	0	0	0	0	2998600	1620700			9	691	7	40;41	47;48	47			431	2
AAAQLLQSQAQQSGAQQTK	Unmodified	1956.0025	0.0024662011	2041	sp|Q9NVA2|SEP11_HUMAN;sp|Q9NVA2-2|SEP11_HUMAN	yes	no	0	0	0	0	0	1		1							27.58	27.58	3	1.3599E-30	5512	20190821_JH_WT_Ubi	174.68	124.07	7555900	1355800	0	6200100	0	0	0	0	0	0			10	2041	8	42;43	49;50	50				2
AAAVAAAGAGEPQSPDELLPK	Acetyl (Protein N-term)	2004.0164	0.016384931	2023	sp|Q9NS69|TOM22_HUMAN	yes	yes	1	0	0	0	0									1	49.149	49.149	3	0.01469	14401	20190902_JH_WT_Ubi_3	45.577	17.933	1442600	0	0	0	0	0	0	0	0	1442600			11	2023	9	44	51	51				1
AAAVLSGPSAGSAAGVPGGTGGLSAVSSGPR	Acetyl (Protein N-term)	2607.3253	0.3252569	1598	sp|Q8IZL8|PELP1_HUMAN	yes	yes	1	0	0	0	0					1			1		48.727	48.727	3	4.6027E-05	14709	20190902_JH_WT_Ubi_2	70.983	49.315	1901000	0	0	0	0	662830	0	0	1238200	0			12	1598	10	45;46	52;53	53				2
AAAYNLVQHGITNLCVIGGDGSLTGANIFR	Unmodified	3101.5717	0.57165196	604	sp|P17858|PFKAL_HUMAN;sp|P17858-2|PFKAL_HUMAN	yes	no	0	0	0	0	0			1							49.15	49.15	3	7.6935E-26	13674	20190821_JH_WT_Ubi	138.78	96.461	3081900	0	0	3081900	0	0	0	0	0	0			13	604	11	47	54	54				1
AADDSKEVESFQQLLNAR	GlyGly (K)	2134.0291	0.029074882	1605	sp|Q8N1B4|VPS52_HUMAN;sp|Q8N1B4-2|VPS52_HUMAN	yes	no	0	0	1	0	1			1			1	1			41.228	41.228	3	0.00012957	10515	20190821_JH_WT_Ubi	101.3	65.592	8405300	0	0	4333200	0	0	2905700	1166400	0	0			14	1605	12	48;49;50	55;56;57	57		1605		3
AADFQLHTHVNDGTEFGGSIYQK	Unmodified	2534.1826	0.18261541	2202	sp|Q9Y277|VDAC3_HUMAN;sp|Q9Y277-2|VDAC3_HUMAN	yes	no	0	0	0	0	0	1	1	1						1	34.162	34.162	3;4	0.017794	8108	20190821_JH_EV_Ubi	42.309	23.017	14576000	3612400	1793300	3286100	0	0	0	0	0	5884700			15	2202	13	51;52;53;54	58;59;60;61	58				4
AADSSAPEDSEKLVGDTVSYSK	GlyGly (K)	2369.087	0.087043271	1184	sp|Q08357|S20A2_HUMAN	yes	yes	0	0	1	0	1	1	1								32.357	32.357	3	0.0098525	6723	20190821_JH_MUT_Ubi	55.206	26.734	1890000	1005200	884800	0	0	0	0	0	0	0			16	1184	14	55;56	62;63	63		1176		2
AAEAHVDAHYYEQNEQPTGTCAACITGDNR	Unmodified	3348.416	0.41601553	981	sp|P55263-3|ADK_HUMAN;sp|P55263|ADK_HUMAN;sp|P55263-4|ADK_HUMAN;sp|P55263-2|ADK_HUMAN	yes	no	0	0	0	0	0			1					1		29.928	29.928	4	0.00015764	6281	20190821_JH_WT_Ubi	64.779	38.824	4132500	0	0	1652500	0	0	0	0	2480000	0			17	981	15	57;58	64;65	64				2
AAEDDEDDDVDTKK	GlyGly (K)	1678.6806	0.68058252	431	sp|P06454-2|PTMA_HUMAN;sp|P06454|PTMA_HUMAN	yes	no	0	0	1	0	1	1	1								17.886	17.886	3	0.0026915	2988	20190821_JH_EV_Ubi	93.243	60.628	4539900	2473900	2065900	0	0	0	0	0	0	0			18	431	16	59;60	66;67	66		418;419		2
AAEKQVPGGGGGGGSGGGGGSGGGGSGGGR	Acetyl (Protein N-term);GlyGly (K)	2398.0606	0.060602795	2121	sp|Q9UHB9-4|SRP68_HUMAN;sp|Q9UHB9-2|SRP68_HUMAN;sp|Q9UHB9|SRP68_HUMAN	yes	no	1	0	1	0	1						1				22.246	22.246	3	1.6347E-05	4940	20190902_JH_MUT_Ubi_2	79.917	56.118	389830	0	0	0	0	0	389830	0	0	0			19	2121	17	61	68	68		1989		1
AAELIANSLATAGDGLIELR	Unmodified	1997.0793	0.079319539	771	sp|P35232|PHB_HUMAN	yes	yes	0	0	0	0	0			1							50.891	50.891	3	1.6646E-09	14302	20190821_JH_WT_Ubi	129.06	72.542	3870100	0	0	3870100	0	0	0	0	0	0			20	771	18	62	69	69				1
AAEPVEDNCINFVAMK	Acetyl (Protein N-term)	1848.8386	0.83862026	1272	sp|Q14116|IL18_HUMAN;sp|Q14116-2|IL18_HUMAN	yes	no	1	0	0	0	0			1							48.989	48.989	2	0.0071615	13606	20190821_JH_WT_Ubi	82.774	41.234	1733400	0	0	1733400	0	0	0	0	0	0			21	1272	19	63	70	70				0
AAESLADPTEYENLFPGLK	Unmodified	2064.0052	0.0051515425	777	sp|P35606-2|COPB2_HUMAN;sp|P35606|COPB2_HUMAN	yes	no	0	0	0	0	0								1		51.338	51.338	2	0.0063777	15316	20190902_JH_WT_Ubi_2	65.295	31.295	1084800	0	0	0	0	0	0	0	1084800	0			22	777	20	64	71	71				1
AAESPDQKDTDGGPK	GlyGly (K)	1628.7278	0.72780748	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	16.528	16.528	3	0.00088537	2530	20190821_JH_MUT_Ubi	99.834	66.902	45740000	5717000	3773300	6017000	5010600	2501100	3675300	2735500	10189000	6121200			23	955	21	65;66;67;68;69;70;71;72;73	72;73;74;75;76;77;78;79;80	75		914;915		9
AAESPDQKDTDGGPKEEESPV	GlyGly (K)	2299.0088	0.00879295	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	2	1	1	1	1	1	1				23.713	23.713	3	5.8786E-15	4328	20190821_JH_EV_Ubi	143.69	114.05	75275000	14336000	6426700	4179500	20237000	22178000	7918800	0	0	0			24	955	22	74;75;76;77;78;79	81;82;83;84;85;86;87	81		914;915		7
AAFDDAIAELDTLSEESYK	Unmodified	2086.9583	0.95826093	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	0	0	0	1		1		1	1	1	1	1	53.73	53.73	2;3	1.2705E-23	14350	20190821_JH_EV_Ubi	167.37	123.38	24450000	1338400	0	6414900	0	1374200	1073500	1718500	5088300	7441800			25	1043	23	80;81;82;83;84;85;86	88;89;90;91;92;93;94	88				7
AAGCNIPVASVAAGFPAGQTHLK	Unmodified	2236.1423	0.14227092	2217	sp|Q9Y315|DEOC_HUMAN	yes	yes	0	0	0	0	0								1		38.123	38.123	3	0.0066408	11213	20190902_JH_WT_Ubi_2	53.454	20.323	2840900	0	0	0	0	0	0	0	2840900	0			26	2217	24	87	95	95				1
AAGIIHLGATSCYVGDNTDLIILR	Unmodified	2542.3214	0.3213575	735	sp|P30566-2|PUR8_HUMAN;sp|P30566|PUR8_HUMAN	yes	no	0	0	0	0	0		1								46.559	46.559	3	3.0495E-08	12045	20190821_JH_MUT_Ubi	107.02	55.481	1556300	0	1556300	0	0	0	0	0	0	0			27	735	25	88	96	96				1
AALANLCIGDVITAIDGENTSNMTHLEAQNR	Oxidation (M);Deamidation (NQ)	3328.5664	0.56636816	106	sp|O00151|PDLI1_HUMAN	yes	yes	0	1	0	1	0			1							48.752	48.752	3	0.00043889	13531	20190821_JH_WT_Ubi	65.118	37.379	2724500	0	0	2724500	0	0	0	0	0	0			28	106	26	89	97	97	43		49	0
AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR	2 Oxidation (M)	4183.0467	0.046662562	287	sp|O75390|CISY_HUMAN	yes	yes	0	0	0	2	0		1	1			1	1	1		46.986	46.986	4	1.5001E-05	12286	20190821_JH_MUT_Ubi	68.271	46.995	41134000	0	6769400	17338000	0	0	4931800	2795100	9299700	0			29	287	27	90;91;92;93;94	98;99;100;101;102;103;104	98			130;131	7
AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR	Oxidation (M)	4167.0517	0.05174794	287	sp|O75390|CISY_HUMAN	yes	yes	0	0	0	1	0		1					1			50.135	50.135	4	0.00017525	13281	20190821_JH_MUT_Ubi	50.817	37.859	8110600	0	7371000	0	0	0	0	739610	0	0			30	287	27	95;96	105;106	105			130;131	2
AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR	Unmodified	4151.0568	0.056833318	287	sp|O75390|CISY_HUMAN	yes	yes	0	0	0	0	0		1	1							52.94	52.94	4	6.831E-06	14956	20190821_JH_WT_Ubi	66.05	52.689	18723000	0	7109700	11613000	0	0	0	0	0	0			31	287	27	97;98	107;108	108				2
AALQEELQLCKGLVQALQTK	GlyGly (K)	2354.2628	0.26277999	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1		1	45.285	45.285	3	6.9745E-40	11707	20190821_JH_MUT_Ubi	192.22	139.7	46770000	8888700	12151000	8432700	1958900	1569300	6417600	5535300	0	1816600			32	881	28	99;100;101;102;103;104;105;106	109;110;111;112;113;114;115;116	112		857		8
AALVLEDGSVLR	Acetyl (Protein N-term)	1283.7085	0.70851601	701	sp|P27708|PYR1_HUMAN	yes	yes	1	0	0	0	0			1							54.505	54.505	2	5.1169E-06	15629	20190821_JH_WT_Ubi	136.57	58.889	1864500	0	0	1864500	0	0	0	0	0	0			33	701	29	107	117	117				0
AAPAPGLISVFSSSQELGAALAQLVAQR	Acetyl (Protein N-term)	2793.5025	0.50249299	337	sp|O95336|6PGL_HUMAN	yes	yes	1	0	0	0	0								1		62.755	62.755	3	1.2068E-08	17765	20190902_JH_WT_Ubi_2	98.887	73.977	582940	0	0	0	0	0	0	0	582940	0			34	337	30	108	118	118				1
AAPAQQTTQPGGGK	Acetyl (Protein N-term)	1352.6684	0.66844211	2058	sp|Q9NXG2|THUM1_HUMAN	yes	yes	1	0	0	0	0									1	24.447	24.447	2	0.0048417	6322	20190902_JH_WT_Ubi_3	82.505	30.25	0	0	0	0	0	0	0	0	0	0			35	2058	31	109	119	119				1
AAPLEEMEAPAADAIMSPEEELDGYEPEPLGKR	2 Oxidation (M);GlyGly (K)	3700.676	0.67603777	1177	sp|Q07820-2|MCL1_HUMAN;sp|Q07820|MCL1_HUMAN	yes	no	0	0	1	2	1	1	1	1	1		1	1	1	1	42.608	42.608	3	3.3596E-25	11068	20190821_JH_WT_Ubi	126.5	101.85	41940000	3971300	5491000	7827300	2344800	0	5581800	5100400	5575800	6048000			36	1177	32	110;111;112;113;114;115;116;117	120;121;122;123;124;125;126;127;128;129;130	127		1168	732;733	11
AAPLEEMEAPAADAIMSPEEELDGYEPEPLGKR	Oxidation (M);GlyGly (K)	3684.6811	0.68112315	1177	sp|Q07820-2|MCL1_HUMAN;sp|Q07820|MCL1_HUMAN	yes	no	0	0	1	1	1	1	1				1	1		1	45.219	45.219	3	3.1548E-07	12998	20190902_JH_MUT_Ubi_2	82.773	59.202	10422000	927570	3509600	0	0	0	2822900	1645800	0	1516500			37	1177	32	118;119;120;121;122	131;132;133;134;135;136;137	135		1168	732;733	7
AAPLEEMEAPAADAIMSPEEELDGYEPEPLGKR	GlyGly (K)	3668.6862	0.68620853	1177	sp|Q07820-2|MCL1_HUMAN;sp|Q07820|MCL1_HUMAN	yes	no	0	0	1	0	1						1				48.173	48.173	3	2.314E-05	13938	20190902_JH_MUT_Ubi_2	72.822	62.546	1643900	0	0	0	0	0	1643900	0	0	0			38	1177	32	123	138	138		1168		1
AAPMTPAARPEDYEAALNAALADVPELAR	Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ)	3052.4812	0.4811652	1153	sp|Q04446|GLGB_HUMAN	yes	yes	1	1	0	1	1								1		55.309	55.309	3	0.031687	16393	20190902_JH_WT_Ubi_2	53.262	27.987	0	0	0	0	0	0	0	0	0	0			39	1153	33	124	139	139	380		720	1
AAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQR	GlyGly (K)	4053.0767	0.076700362	823	sp|P41440|S19A1_HUMAN;sp|P41440-2|S19A1_HUMAN	yes	no	0	0	1	0	1		1		1						45.275	45.275	3	3.522E-12	11730	20190821_JH_MUT_Ubi	92.208	71.616	1700400	0	1290100	0	410320	0	0	0	0	0			40	823	34	125;126	140;141	141		794		2
AASAAAASAAAASAASGSPGPGEGSAGGEK	Acetyl (Protein N-term)	2428.1102	0.11023833	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	1	0	0	0	0	1			1	1	1		1	1	39.314	39.314	3	4.8628E-61	11699	20190902_JH_WT_Ubi_2	183.85	142.65	16902000	1927900	0	0	1542200	1676300	721420	0	6070500	4964000			41	1227	35	127;128;129;130;131;132	142;143;144;145;146;147	146				6
AASAAAASAAAASAASGSPGPGEGSAGGEKR	Acetyl (Protein N-term);GlyGly (K)	2698.2543	0.2542768	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	1	0	1	0	1								1	1	35.19	35.19	3	4.82E-06	10204	20190902_JH_WT_Ubi_2	88.244	61.309	1354600	0	0	0	0	0	0	0	1354600	0			42	1227	36	133;134	148;149	148		1294		2
AASAAGAAGSAGGSSGAAGAAGGGAGAGTR	Unmodified	2174.006	0.0060480291	2157	sp|Q9UKY7|CDV3_HUMAN;sp|Q9UKY7-2|CDV3_HUMAN	yes	no	0	0	0	0	0			1							22.082	22.082	3	0.022159	4111	20190821_JH_WT_Ubi	45.666	9.0838	0	0	0	0	0	0	0	0	0	0			43	2157	37	135	150	150				1
AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK	Unmodified	3668.7123	0.71233221	2157	sp|Q9UKY7|CDV3_HUMAN;sp|Q9UKY7-2|CDV3_HUMAN	yes	no	0	0	0	0	1		1	1	1				1	1	24.894	24.894	3;4	2.3991E-15	6643	20190902_JH_WT_Ubi_2	89.996	58.216	21611000	0	444730	6212200	1876400	0	0	0	5652400	7425800			44	2157	38	136;137;138;139;140	151;152;153;154;155	154				5
AASDIAMTELPPTHPIR	Oxidation (M)	1834.9247	0.92473315	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	0	1	0			1						1	31.953	31.953	3	0.020772	6925	20190821_JH_WT_Ubi	52.522	11.431	10527000	0	0	4150800	0	0	0	0	0	6375900			45	1043	39	141;142	156;157	156			642	2
AATFGLILDDVSLTHLTFGK	Unmodified	2118.1361	0.13610614	771	sp|P35232|PHB_HUMAN	yes	yes	0	0	0	0	0		1	1					1		53.252	53.252	3	4.3744E-05	15057	20190821_JH_WT_Ubi	97.214	70.377	35947000	0	8234300	24676000	0	0	0	0	3036800	0			46	771	40	143;144;145	158;159;160	159				3
AAVKGHGAINDLTFTEEVDMK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2376.1267	0.12674002	17	CON__Q0V8M9	yes	yes	0	1	1	1	1									1	24.105	24.105	3	0.032649	6232	20190902_JH_WT_Ubi_3	44.089	9.6939	0	0	0	0	0	0	0	0	0	0		+	47	17	41	146	161	161	12			1
AAVLKYENNVMNIR	3 Deamidation (NQ)	1636.8131	0.81305744	586	sp|Q08209-5|PP2BA_HUMAN;sp|P48454-2|PP2BC_HUMAN;sp|Q08209-2|PP2BA_HUMAN;sp|P48454|PP2BC_HUMAN;sp|P16298-2|PP2BB_HUMAN;sp|P16298-3|PP2BB_HUMAN;sp|Q08209|PP2BA_HUMAN;sp|P48454-3|PP2BC_HUMAN;sp|P16298|PP2BB_HUMAN;sp|P16298-4|PP2BB_HUMAN	yes	no	0	3	0	0	1		1								44.046	44.046	2	0.036548	11106	20190821_JH_MUT_Ubi	42.395	8.4342	0	0	0	0	0	0	0	0	0	0			48	586	42	147	162	162	218;219;220			1
AAVSHWQQQSYLDSGIHSGATTTAPSLSGK	Unmodified	3084.4901	0.4900904	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	0	0	0		1						1		33.23	33.23	4	0.00063477	9478	20190902_JH_WT_Ubi_2	57.051	32.653	7336800	0	1617600	0	0	0	0	0	5719200	0			49	770	43	148;149	163;164	164				2
ACEFAGFQCQIQFGPHNEQK	Unmodified	2395.0474	0.047384258	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0			1							37.817	37.817	3	0.00025953	9102	20190821_JH_WT_Ubi	83.891	58.973	5060900	0	0	5060900	0	0	0	0	0	0			50	2230	44	150	165	165				1
ACKSSGSSSTSTHLNCAPESIAMI	Oxidation (M);GlyGly (K)	2625.1469	0.14689989	1545	sp|Q86TG1-2|T150A_HUMAN;sp|Q86TG1|T150A_HUMAN	yes	no	0	0	1	1	1			1			1		1		31.183	31.183	3	0.002239	7675	20190902_JH_MUT_Ubi_2	64.203	43.003	6840200	0	0	2411800	0	0	1554900	0	2873500	0			51	1545	45	151;152;153	166;167;168	166		1539	918	3
ACPLDQAIGLLVAIFHK	Acetyl (Protein N-term)	1907.0339	0.033889671	434	sp|P06703|S10A6_HUMAN	yes	yes	1	0	0	0	0		1								61.578	61.578	3	0.020162	15601	20190821_JH_MUT_Ubi	44.925	14.749	2585700	0	2585700	0	0	0	0	0	0	0			52	434	46	154	169	169				1
ACVFGNEPKASDEVPLAPR	GlyGly (K)	2170.0477	0.047701834	1667	sp|Q8TB61-3|S35B2_HUMAN;sp|Q8TB61-2|S35B2_HUMAN;sp|Q8TB61|S35B2_HUMAN	yes	no	0	0	1	0	1							1			34.19	34.19	3	0.0031654	8457	20190902_JH_MUT_Ubi_3	70.784	35.073	487840	0	0	0	0	0	0	487840	0	0			53	1667	47	155	170	170		1664		1
ACVVHGSDLKDMTSEQLDDILK	GlyGly (K)	2587.2258	0.22580213	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			40.24	40.24	4	9.6452E-06	9710	20190821_JH_MUT_Ubi	88.176	61.739	11995000	2313300	4323200	0	0	0	2707900	2651000	0	0			54	418	48	156;157;158;159	171;172;173;174	172		386;387		4
ACVVHGSDLKDMTSEQLDDILK	Oxidation (M);GlyGly (K)	2603.2207	0.22071676	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN	yes	no	0	0	1	1	1						1	1			36.299	36.299	3;4	0.0011025	9815	20190902_JH_MUT_Ubi_2	70.114	45.4	6698000	0	0	0	0	0	5894600	803410	0	0			55	418	48	160;161	175;176;177	175		386;387	211	3
ADAASQVLLGSGLTILSQPLMYVK	Acetyl (Protein N-term);Oxidation (M)	2532.3509	0.35092629	2257	sp|Q9Y6C9|MTCH2_HUMAN	yes	yes	1	0	0	1	0	1		1					1	1	60.336	60.336	3	1.9709E-10	16709	20190821_JH_WT_Ubi	121.5	87.222	2194100	490100	0	1102800	0	0	0	0	0	601230			56	2257	49	162;163;164;165	178;179;180;181	179			1161	4
ADAEGESDLENSR	Unmodified	1391.5801	0.58008061	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0									1	22.689	22.689	2	0.032127	5800	20190902_JH_WT_Ubi_3	57.347	23.969	1495800	0	0	0	0	0	0	0	0	1495800			57	2230	50	166	182	182				0
ADALQAGASQFETSAAKLK	GlyGly (K)	2020.0225	0.022532941	1077	sp|Q15836|VAMP3_HUMAN;sp|P63027|VAMP2_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1			1	35.572	35.572	3	5.3107E-05	8230	20190821_JH_WT_Ubi	104.26	58.649	31167000	0	3220400	10187000	2094000	3365600	3762500	0	0	8537300			58	1077	51	167;168;169;170;171;172	183;184;185;186;187;188	187		1065;1066		6
ADDGRPFPQVIK	Unmodified	1341.7041	0.70409934	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	0	1								1		30.948	30.948	3	0.035666	8681	20190902_JH_WT_Ubi_2	85.924	24.274	6552800	0	0	0	0	0	0	0	6552800	0			59	400	52	173	189	189				1
ADDLDFETGDAGASATFPMQCSALR	Acetyl (Protein N-term);Oxidation (M)	2703.1429	0.14286037	1084	sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN	yes	no	1	0	0	1	0			1							51.337	51.337	3	0.011102	14480	20190821_JH_WT_Ubi	45.659	31.764	1417200	0	0	1417200	0	0	0	0	0	0			60	1084	53	174	190	190			668	1
ADDPSSYMEVVQAANTSGNWEELVK	Unmodified	2739.2334	0.23338993	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1							52.067	52.067	3	0.019059	14724	20190821_JH_WT_Ubi	41.166	14.425	1888500	0	0	1888500	0	0	0	0	0	0			61	1123	54	175	191	191				1
ADELSEKQVYDAHTK	GlyGly (K)	1846.8697	0.86972069	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1		1	1	23.181	23.181	3;4	2.6991E-15	4185	20190821_JH_EV_Ubi	163.62	127.27	125990000	28130000	0	0	34990000	26234000	4236100	0	12912000	19493000			62	1148	55	176;177;178;179;180;181	192;193;194;195;196;197	192		1146;1147		6
ADELSEKQVYDAHTK	Acetyl (Protein N-term);GlyGly (K)	1888.8803	0.88028538	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	1	0	1	0	1	1	1	1	2	3	1	1	1	2	29.53	29.53	3	1.2202E-38	6195	20190821_JH_EV_Ubi	206.67	159.13	6526900000	794070000	224210000	742480000	577160000	1654600000	369950000	382020000	1026000000	756410000			63	1148	55	182;183;184;185;186;187;188;189;190;191;192;193;194	198;199;200;201;202;203;204;205;206;207;208;209;210;211	198		1146;1147		11
ADELSEKQVYDAHTK	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	1889.8643	0.86430096	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	1	1	1	0	1			1	1	1	1		1	1	30.171	30.171	3	1.7849E-14	8499	20190902_JH_WT_Ubi_2	160.63	106.68	202850000	0	0	3264400	39917000	34834000	15854000	0	64583000	44393000			64	1148	55	195;196;197;198;199;200	212;213;214;215;216;217	216	995	1146;1147		6
ADELSEKQVYDAHTKEIDLVNR	Acetyl (Protein N-term);2 GlyGly (K)	2842.3733	0.37332931	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	1	0	2	0	2	1	1	1	1				1		35.774	35.774	4	7.8825E-05	8694	20190821_JH_EV_Ubi	83.423	49.202	32036000	7862600	4801700	6860700	3075700	0	0	0	9435100	0			65	1148	56	201;202;203;204;205	218;219;220;221;222	218		1146;1147		5
ADGGAEYATYQTKSTTPAEQR	GlyGly (K)	2358.0724	0.07239626	572	sp|P15529-16|MCP_HUMAN;sp|P15529-7|MCP_HUMAN;sp|P15529-4|MCP_HUMAN;sp|P15529-6|MCP_HUMAN;sp|P15529-3|MCP_HUMAN;sp|P15529-5|MCP_HUMAN;sp|P15529-2|MCP_HUMAN	yes	no	0	0	1	0	1	1	2	1	1	1	1	1		1	25.413	25.413	3	1.1616E-56	5492	20190902_JH_MUT_Ubi_3	205.65	168.09	1239400000	130130000	81817000	193560000	85621000	112420000	199490000	117890000	0	318430000			66	572	57	206;207;208;209;210;211;212;213;214	223;224;225;226;227;228;229;230;231;232	230		562		10
ADGGAEYATYQTKSTTPAEQR	GlyGly (K);Deamidation (NQ)	2359.0564	0.056411845	572	sp|P15529-16|MCP_HUMAN;sp|P15529-7|MCP_HUMAN;sp|P15529-4|MCP_HUMAN;sp|P15529-6|MCP_HUMAN;sp|P15529-3|MCP_HUMAN;sp|P15529-5|MCP_HUMAN;sp|P15529-2|MCP_HUMAN	yes	no	0	1	1	0	1	1	1			1	1	1	1	1	26.356	26.356	3	1.9554E-79	5829	20190902_JH_MUT_Ubi_3	219.85	173.52	62950000	955620	520000	0	0	8463500	10302000	4944500	20541000	17224000			67	572	57	215;216;217;218;219;220;221	233;234;235;236;237;238;239	237	859;860	562		7
ADHQPLTEASYVNLPTIALCNTDSPLR	Unmodified	2995.4709	0.47093486	480	sp|P08865|RSSA_HUMAN	yes	yes	0	0	0	0	0								1		47.182	47.182	3	9.0879E-13	14226	20190902_JH_WT_Ubi_2	114.71	81.284	8992900	0	0	0	0	0	0	0	8992900	0			68	480	58	222	240	240				1
ADIDVSGPSVDTDAPDLDIEGPEGKLK	GlyGly (K)	2866.372	0.3719919	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			41.716	41.716	3	2.8121E-11	10936	20190821_JH_EV_Ubi	110.57	83.009	5822300	1154400	1689900	0	0	0	891420	2086600	0	0			69	1190	59	223;224;225;226	241;242;243;244	241		1182;1183		4
ADIKSPSLDVTVPEAELNLETPEISVGGK	GlyGly (K)	3121.6031	0.60305447	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1								47.409	47.409	3	5.9477E-21	12349	20190821_JH_MUT_Ubi	129.37	100.96	8899900	2642400	6257500	0	0	0	0	0	0	0			70	1190	60	227;228	245;246	246		1184		2
ADIPLPEGEASPPAPPLKQVLEMQEQLQK	GlyGly (K)	3266.6857	0.68567866	2229	sp|Q9Y487|VPP2_HUMAN	yes	yes	0	0	1	0	1	1					1				49.871	49.871	3	0.001557	13620	20190821_JH_EV_Ubi	55.871	32.477	2179300	1490000	0	0	0	0	689320	0	0	0			71	2229	61	229;230	247;248	247		2073		2
ADIPLPEGEASPPAPPLKQVLEMQEQLQK	Oxidation (M);GlyGly (K)	3282.6806	0.68059329	2229	sp|Q9Y487|VPP2_HUMAN	yes	yes	0	0	1	1	1							1			45.648	45.648	3	0.014573	12156	20190902_JH_MUT_Ubi_3	44.483	23.314	1190700	0	0	0	0	0	0	1190700	0	0			72	2229	61	231	249	249		2073	1149	1
ADKASASAPAPASATEILLTPAR	GlyGly (K)	2322.2179	0.21793828	2007	sp|Q9NQX7-2|ITM2C_HUMAN;sp|Q9NQX7-3|ITM2C_HUMAN;sp|Q9NQX7|ITM2C_HUMAN	yes	no	0	0	1	0	1	1			1	1			1		37.716	37.716	3	6.4423E-07	9267	20190902_JH_EV_Ubi_2	99.414	59.228	16379000	5529800	0	0	3323600	3620300	0	0	3905400	0			73	2007	62	232;233;234;235	250;251;252;253	251		1918		4
ADLINNLGTIAKSGTK	GlyGly (K)	1728.937	0.9370124	455;465	sp|P08238|HS90B_HUMAN;sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	no	no	0	0	1	0	1		1				1				35.744	35.744	3	0.011944	9481	20190902_JH_MUT_Ubi_2	64.244	33.761	9068100	0	3422900	0	0	0	5645300	0	0	0			74	465;455	63	236;237	254;255	255		456;457		2
ADPSQFELLKVLGQGSFGK	GlyGly (K)	2134.1059	0.10586864	926	sp|P51812|KS6A3_HUMAN	yes	yes	0	0	1	0	1						1				47.841	47.841	3	0.0046092	13869	20190902_JH_MUT_Ubi_2	67.299	9.3261	2259800	0	0	0	0	0	2259800	0	0	0			75	926	64	238	256	256		891		1
ADQELMTYSHDNIICGITSVSFSKSGR	Oxidation (M);GlyGly (K)	3145.4445	0.44446212	1066	sp|P62873-2|GBB1_HUMAN;sp|P62873|GBB1_HUMAN	yes	no	0	0	1	1	1		1	1					1	1	39.748	39.748	4	7.8137E-07	11308	20190902_JH_WT_Ubi_3	88.709	58.241	18556000	0	1632300	8834000	0	0	0	0	4024500	4065100			76	1066	65	239;240;241;242	257;258;259;260	260		1044	654	4
ADQLTEEQIAEFK	Acetyl (Protein N-term);Deamidation (NQ)	1563.7304	0.73043325	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	1	1	0	0	0								1		48.75	48.75	2	0.010763	14641	20190902_JH_WT_Ubi_2	69.451	28.862	6474900	0	0	0	0	0	0	0	6474900	0			77	504	66	243	261	261	853			0
ADQLTEEQIAEFKEAFSLFDK	Acetyl (Protein N-term);GlyGly (K)	2614.2439	0.24387826	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	1	0	1	0	1		1						1		57.29	57.29	3	1.3977E-11	16720	20190902_JH_WT_Ubi_2	130.47	104.06	3757400	0	1277500	0	0	0	0	0	2479900	0			78	504	67	244;245	262;263	263		492;493		2
ADRDESSPYAAMLAAQDVAQR	Oxidation (M)	2280.0441	0.044073019	1044	sp|P62263|RS14_HUMAN	yes	yes	0	0	0	1	1			1					1	1	32.903	32.903	3	0.001006	9432	20190902_JH_WT_Ubi_2	80.016	49.598	12838000	0	0	3081200	0	0	0	0	5677600	4079100			79	1044	68	246;247;248	264;265;266	265			644	3
ADSGTAGGAALAAPAPGPGSGGPGPR	Acetyl (Protein N-term)	2158.0403	0.04030827	1765	sp|Q96C90|PP14B_HUMAN	yes	yes	1	0	0	0	0								1	1	39.01	39.01	3	9.9854E-06	11098	20190902_JH_WT_Ubi_3	85.932	51.537	8102100	0	0	0	0	0	0	0	4213100	3889000			80	1765	69	249;250	267;268	268				2
ADVLDLHEAGGEDFAMDEDGDESIHK	Acetyl (Protein N-term);Oxidation (M)	2872.1981	0.19812664	2246	sp|Q9Y5S9-2|RBM8A_HUMAN;sp|Q9Y5S9|RBM8A_HUMAN	yes	no	1	0	0	1	0			1						1	42.542	42.542	3	5.9571E-11	12322	20190902_JH_WT_Ubi_3	109.84	85.329	4179400	0	0	2243500	0	0	0	0	0	1935800			81	2246	70	251;252	269;270	270			1158	2
ADVVVSGPKVDIEAPDVSLEGPEGK	GlyGly (K)	2620.3232	0.32319122	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1	1			41.071	41.071	3	7.0343E-07	10730	20190902_JH_MUT_Ubi_3	95.344	52.146	1900900	0	0	0	0	0	1165200	735710	0	0			82	1190	71	253;254	271;272	272		1185;1186		2
AEAAFVLHVTDVNDNAPAFDR	2 Deamidation (NQ)	2273.06	0.06004066	1791	sp|Q96JQ0|PCD16_HUMAN	yes	yes	0	2	0	0	0								1		52.004	52.004	3	0.0047545	15513	20190902_JH_WT_Ubi_2	61.015	7.6197	3391900	0	0	0	0	0	0	0	3391900	0			83	1791	72	255	273	273	571;572			1
AEAEAWYQTKFETLQAQAGK	GlyGly (K)	2383.1444	0.14443899	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1	1	1	1	1		1		1	1	39.665	39.665	3	1.1141E-30	10060	20190821_JH_EV_Ubi	172.95	147.34	77587000	5927400	10367000	29096000	1991900	0	10552000	0	9854200	9799000		+	84	8;19	73	256;257;258;259;260;261;262	274;275;276;277;278;279;280	274		22;23		7
AEAEGESLESWLNKATNPSNR	Acetyl (Protein N-term);GlyGly (K)	2458.1361	0.13605915	2068	sp|Q9NZ52-2|GGA3_HUMAN;sp|Q9NZ52|GGA3_HUMAN	yes	no	1	0	1	0	1	1	1		1	1	1	1		1	49.294	49.294	3	3.6456E-29	12935	20190902_JH_MUT_Ubi_3	161.91	104.11	9078000	1987500	1863900	0	504180	895630	918610	1306300	0	1601900			85	2068	74	263;264;265;266;267;268;269	281;282;283;284;285;286;287	286		1948		6
AEAESWYQTKYEELQVTAGR	GlyGly (K)	2472.1557	0.15573196	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;CON__P50446	no	no	0	0	1	0	1		1								39.08	39.08	3	0.0034649	9139	20190821_JH_MUT_Ubi	67.644	32.773	1200200	0	1200200	0	0	0	0	0	0	0		+	86	3	75	270	288	288		0		1
AEAGAGLSETVTETTVTVTTEPENR	Acetyl (Protein N-term)	2604.2402	0.24024945	265	sp|O60927|PP1RB_HUMAN	yes	yes	1	0	0	0	0									1	48.441	48.441	3	0.0071334	14219	20190902_JH_WT_Ubi_3	47.728	18.602	700950	0	0	0	0	0	0	0	0	700950			87	265	76	271	289	289				1
AEANQHVVDEKAR	GlyGly (K)	1579.7703	0.77028142	897	sp|P49795|RGS19_HUMAN	yes	yes	0	0	1	0	1									1	16.349	16.349	3	0.025024	3937	20190902_JH_WT_Ubi_3	62.732	32.182	838580	0	0	0	0	0	0	0	0	838580			88	897	77	272	290	290		865		1
AEASIQAGAGDGEWEESEVKLK	GlyGly (K)	2417.1347	0.13466217	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								34.415	34.415	3	0.017578	7545	20190821_JH_MUT_Ubi	49.34	18.804	1639000	0	1639000	0	0	0	0	0	0	0			89	1190	78	273	291	291		1187;1188		1
AEDGSVIDYELIDQDAR	Unmodified	1907.8749	0.87486565	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	43.227	43.227	3	5.7349E-33	11283	20190821_JH_WT_Ubi	184.87	120.39	43822000	2070700	0	12099000	2203300	2061400	0	0	11473000	13915000			90	446	79	274;275;276;277;278;279	292;293;294;295;296;297	295				6
AEDKEWMPVTK	Oxidation (M);GlyGly (K)	1462.6762	0.67622961	576	sp|P15880|RS2_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	23.854	23.854	3	0.003281	6144	20190902_JH_WT_Ubi_3	105.65	26.685	35121000	967890	1344200	4800800	1163800	2273900	2418300	2749800	6608200	12794000			91	576	80	280;281;282;283;284;285;286;287;288	298;299;300;301;302;303;304;305;306	306		567	362	9
AEDKEWMPVTK	GlyGly (K)	1446.6813	0.68131498	576	sp|P15880|RS2_HUMAN	yes	yes	0	0	1	0	1		1				1			1	28.097	28.097	3	0.004221	5296	20190821_JH_MUT_Ubi	99.215	37.872	9233400	0	643750	0	0	0	1151800	0	0	7437800			92	576	80	289;290;291	307;308;309	307		567		3
AEEELGELEAK	Unmodified	1216.5823	0.58231244	2195	sp|Q9UQE7|SMC3_HUMAN	yes	yes	0	0	0	0	0					1					20.882	20.882	3	0.028262	4380	20190902_JH_EV_Ubi_3	58.63	21.565	21210000	0	0	0	0	21210000	0	0	0	0			93	2195	81	292	310	310				1
AEEETDEEKPK	GlyGly (K)	1417.6209	0.6208828	2132	sp|Q9UHP3|UBP25_HUMAN;sp|Q9UHP3-1|UBP25_HUMAN;sp|Q9UHP3-3|UBP25_HUMAN	yes	no	0	0	1	0	1	1			1						13.527	13.527	3	0.018706	2791	20190902_JH_EV_Ubi_2	73.9	41.377	474030	182460	0	0	291570	0	0	0	0	0			94	2132	82	293;294	311;312	312		2003		2
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	677	sp|P25398|RS12_HUMAN	yes	yes	1	0	0	1	0	1		1	1	1	1		1	1	56.162	56.162	3	1.7288E-11	16047	20190821_JH_WT_Ubi	125.79	71.027	5791900	851320	0	1990300	0	313830	0	0	1002500	1634000			95	677	83	295;296;297;298;299;300;301	313;314;315;316;317;318;319	317			418	7
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term)	2256.1308	0.13076276	677	sp|P25398|RS12_HUMAN	yes	yes	1	0	0	0	0			1							57.52	57.52	3	1.7649E-11	16309	20190821_JH_WT_Ubi	123.61	78.877	1109200	0	0	1109200	0	0	0	0	0	0			96	677	83	302	320	320				1
AEETCAPSVSYFKCVQK	GlyGly (K)	2116.9558	0.95577528	670	sp|P24385|CCND1_HUMAN	yes	yes	0	0	1	0	1			1					1	1	31.957	31.957	3	0.00314	8685	20190902_JH_WT_Ubi_3	74.789	43.556	13217000	0	0	2728700	0	0	0	0	4484700	6003600			97	670	84	303;304;305	321;322;323	323		653;654		3
AEFEVHEVYAVDVLVSSGEGK	Unmodified	2263.1008	0.10084284	2193	sp|Q9UQ80|PA2G4_HUMAN;sp|Q9UQ80-2|PA2G4_HUMAN	yes	no	0	0	0	0	0			1							44.534	44.534	3	3.934E-06	11854	20190821_JH_WT_Ubi	96.562	58.917	4207500	0	0	4207500	0	0	0	0	0	0			98	2193	85	306	324	324				1
AEFPSKVSTR	Acetyl (Protein N-term);GlyGly (K)	1276.6412	0.64116473	2219	sp|Q9Y342|PLLP_HUMAN	yes	yes	1	0	1	0	1							1			30.235	30.235	2	0.0085515	7198	20190902_JH_MUT_Ubi_3	94.309	49.96	214140000	0	0	0	0	0	0	214140000	0	0			99	2219	86	307	325	325		2067		1
AEGGGGGGRPGAPAAGDGK	Unmodified	1537.7233	0.72333123	1128	sp|Q00839|HNRPU_HUMAN	yes	yes	0	0	0	0	1			1							16.026	16.026	2	4.0329E-08	2903	20190821_JH_WT_Ubi	132.23	60.879	1256400	0	0	1256400	0	0	0	0	0	0			100	1128	87	308	326	326				1
AEGKATSTTELPPEYLTSPLSQQSQLPPK	GlyGly (K)	3211.6249	0.62485255	163	sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.961	39.961	3	1.3247E-25	9448	20190821_JH_MUT_Ubi	140.13	102.56	47118000	8236300	6907900	6647000	3866700	2980800	4748000	5218400	4124700	4388900			101	163	88	309;310;311;312;313;314;315;316;317	327;328;329;330;331;332;333;334;335;336;337;338;339;340;341;342;343;344;345;346	335		137;138		20
AEGSDVANAVLDGADCIMLSGETAK	Oxidation (M)	2509.1312	0.13123305	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	45.366	45.366	3	2.4396E-53	12194	20190821_JH_WT_Ubi	190.61	149.08	86967000	3389200	1500400	27778000	1894000	1642200	1517300	1461500	20950000	26835000			102	556	89	318;319;320;321;322;323;324;325;326	347;348;349;350;351;352;353;354;355;356	354			337	10
AEGSDVANAVLDGADCIMLSGETAK	Unmodified	2493.1363	0.13631842	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	50.596	50.596	3	3.0671E-122	15203	20190902_JH_WT_Ubi_2	254.11	211.47	83723000	3603400	1614600	42539000	659430	680340	1385800	1427700	13663000	18150000			103	556	89	327;328;329;330;331;332;333;334;335	357;358;359;360;361;362;363;364;365;366;367;368	367				12
AEGSDVANAVLDGADCIMLSGETAKGDYPLEAVR	Oxidation (M);GlyGly (K)	3623.672	0.67195545	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	1	1		1	1							46.95	46.95	3	3.1591E-13	12241	20190821_JH_MUT_Ubi	109.05	86.539	3616100	0	1295600	2320500	0	0	0	0	0	0			104	556	90	336;337	369;370	369		540	337	2
AELKTAMSTPHVAEPAENEQDEQDENGAEASADLR	Oxidation (M);GlyGly (K);Deamidation (NQ)	3883.6926	0.69262713	686	sp|P26038|MOES_HUMAN	yes	yes	0	1	1	1	1						1				29.378	29.378	4	0.0032048	7149	20190902_JH_MUT_Ubi_2	43.438	20.878	1052100	0	0	0	0	0	1052100	0	0	0			105	686	91	338	371	371	242;243;881	672	426	1
AEMKSQPSETER	Oxidation (M);GlyGly (K)	1521.6729	0.67293514	685	sp|P26006|ITA3_HUMAN	yes	yes	0	0	1	1	1			1							12.111	12.111	3	0.026538	2287	20190821_JH_WT_Ubi	69.216	31.276	8851000	0	0	8851000	0	0	0	0	0	0			106	685	92	339	372	372		671	424	1
AENDVDNELLDYEDDEVETAAGGDGAEAPAKK	Acetyl (Protein N-term);GlyGly (K)	3505.5129	0.51285507	1264	sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN	yes	no	1	0	1	0	1							1			45.654	45.654	3	3.822E-16	12144	20190902_JH_MUT_Ubi_3	120.61	102.89	1682100	0	0	0	0	0	0	1682100	0	0			107	1264	93	340	373;374	373		1329;1330		2
AEPEDHYFLLTEPPLNTPENR	Unmodified	2481.1812	0.18121843	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	0	0			1					1	1	43.034	43.034	3	7.8244E-06	11218	20190821_JH_WT_Ubi	92.671	54.006	7796100	0	0	3188500	0	0	0	0	2408400	2199100			108	1015	94	341;342;343	375;376;377;378	375				4
AEPEKNGEVVHTPETSV	GlyGly (K)	1935.9174	0.91739917	185	sp|O15427|MOT4_HUMAN	yes	yes	0	0	1	0	1	1			1	1			1		26.064	26.064	3	0.0025121	5608	20190902_JH_EV_Ubi_2	77.42	41.399	17103000	3041200	0	0	5449900	3515000	0	0	5096600	0			109	185	95	344;345;346;347	379;380;381;382	380		159		4
AEPPQCTSLAWSADGQTLFAGYTDNLVR	Unmodified	3067.4345	0.43454936	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	0	0	0			1							51.91	51.91	3	0.00018764	14654	20190821_JH_WT_Ubi	69.79	50.467	6574800	0	0	6574800	0	0	0	0	0	0			110	1085	96	348	383	383				1
AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTK	Acetyl (Protein N-term)	3611.6434	0.64343251	330	sp|O95197-6|RTN3_HUMAN;sp|O95197-3|RTN3_HUMAN;sp|O95197-5|RTN3_HUMAN;sp|O95197-4|RTN3_HUMAN;sp|O95197-7|RTN3_HUMAN;sp|O95197-2|RTN3_HUMAN;sp|O95197|RTN3_HUMAN	yes	no	1	0	0	0	0			1					1	1	38.227	38.227	3	9.162E-09	9289	20190821_JH_WT_Ubi	83.693	48.934	13636000	0	0	4249100	0	0	0	0	4831400	4555100			111	330	97	349;350;351	384;385;386;387	384				4
AEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGK	Oxidation (M)	3100.5903	0.59032172	791	sp|P36957-2|ODO2_HUMAN;sp|P36957|ODO2_HUMAN	yes	no	0	0	0	1	0								2	1	41.252	41.252	3	0.00057638	11819	20190902_JH_WT_Ubi_3	55.046	22.326	3115900	0	0	0	0	0	0	0	1735000	1380900			112	791	98	352;353;354	388;389;390	390			502	3
AEQDVENDLLDYDEEEEPQAPQESTPAPPK	Acetyl (Protein N-term)	3424.4954	0.4954141	105	sp|O00148-3|DX39A_HUMAN;sp|O00148-2|DX39A_HUMAN;sp|O00148|DX39A_HUMAN	yes	no	1	0	0	0	0			1							50.113	50.113	3	2.5745E-05	14040	20190821_JH_WT_Ubi	74.766	50.213	1819600	0	0	1819600	0	0	0	0	0	0			113	105	99	355	391	391				1
AEQDVENDLLDYDEEEEPQAPQESTPAPPKK	Acetyl (Protein N-term);GlyGly (K)	3666.6333	0.63330456	105	sp|O00148-3|DX39A_HUMAN;sp|O00148-2|DX39A_HUMAN;sp|O00148|DX39A_HUMAN	yes	no	1	0	1	0	1		1								44.391	44.391	3	2.6099E-06	11214	20190821_JH_MUT_Ubi	93.278	73.954	616840	0	616840	0	0	0	0	0	0	0			114	105	100	356	392	392		88;89		1
AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK	Acetyl (Protein N-term)	3605.6758	0.6757785	934	sp|P52565|GDIR1_HUMAN;sp|P52565-2|GDIR1_HUMAN	yes	no	1	0	0	0	1	1		1	1	1			1	1	41.321	41.321	3	2.2501E-08	12351	20190902_JH_WT_Ubi_2	92.613	71.879	58279000	4901900	0	18185000	1915400	2451000	0	0	16836000	13989000			115	934	101	357;358;359;360;361;362	393;394;395;396;397;398;399;400;401	399				9
AETAAKHGEAQVK	GlyGly (K)	1452.7321	0.732105	612	sp|P18669|PGAM1_HUMAN;sp|Q8N0Y7|PGAM4_HUMAN	yes	no	0	0	1	0	1						1				10.307	10.307	3	0.024764	2391	20190902_JH_MUT_Ubi_2	62.891	26.044	4473000	0	0	0	0	0	4473000	0	0	0			116	612	102	363	402	402		596		1
AETLPGSGDSGPGTASLGPGVAETGTR	Acetyl (Protein N-term)	2483.1776	0.17758961	1279	sp|Q14151|SAFB2_HUMAN;sp|Q14151-2|SAFB2_HUMAN	yes	no	1	0	0	0	0									1	44.423	44.423	2	0.019989	12967	20190902_JH_WT_Ubi_3	46.873	20.641	0	0	0	0	0	0	0	0	0	0			117	1279	103	364	403	403				1
AETLSGLGDSGAAGAAALSSASSETGTR	Acetyl (Protein N-term)	2536.1889	0.18888258	1348	sp|Q15424-2|SAFB1_HUMAN;sp|Q15424|SAFB1_HUMAN;sp|Q15424-4|SAFB1_HUMAN;sp|Q15424-3|SAFB1_HUMAN	yes	no	1	0	0	0	0								1	1	48.403	48.403	3	1.3863E-07	14606	20190902_JH_WT_Ubi_2	95.366	64.83	2339200	0	0	0	0	0	0	0	1189500	1149600			118	1348	104	365;366	404;405	404				2
AEVQKLQMEAPHIIVGTPGR	GlyGly (K)	2287.2107	0.21068484	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	1	0	1		1	1			1				34.978	34.978	4	0.0048878	7878	20190821_JH_MUT_Ubi	61.957	37.288	7301200	0	1870500	3123200	0	0	2307500	0	0	0			119	1001	105	367;368;369	406;407;408	406		987		3
AFADAMEVIPSTLAENAGLNPISTVTELR	Oxidation (M)	3045.5329	0.53286642	913	sp|P50991|TCPD_HUMAN;sp|P50991-2|TCPD_HUMAN	yes	no	0	0	0	1	0								1	1	54.141	54.141	3	7.5933E-05	16133	20190902_JH_WT_Ubi_2	71.506	50.215	4562500	0	0	0	0	0	0	0	2795300	1767300			120	913	106	370;371	409;410	409			576	1
AFAEKNNLSFIETSALDSTNVEEAFK	GlyGly (K)	2988.4353	0.43526086	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1		1	46.812	46.812	3	6.8686E-21	13558	20190902_JH_MUT_Ubi_2	146	117.71	47757000	4322600	8804000	16378000	0	0	5187700	3683400	0	9382000			121	1370	107	372;373;374;375;376;377	411;412;413;414;415;416;417	414		1410		7
AFAEKNNLSFIETSALDSTNVEEAFK	GlyGly (K);Deamidation (NQ)	2989.4193	0.41927645	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN	yes	no	0	1	1	0	1		1				1				48.986	48.986	3	0.0010812	12934	20190821_JH_MUT_Ubi	84.127	59.491	2082700	0	1196400	0	0	0	886250	0	0	0			122	1370	107	378;379	418;419	418	436;437	1410		2
AFEEAEKNAPAIIFIDELDAIAPK	GlyGly (K)	2728.396	0.39596223	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1		1	1			1		1		54.423	54.423	3	2.3353E-06	15572	20190821_JH_WT_Ubi	91.583	62.199	11321000	0	2974700	4807500	0	0	1271600	0	2267600	0			123	974	108	380;381;382;383	420;421;422;423;424	423		955		5
AFHDLKVAPGYYTLTADQDAR	GlyGly (K)	2465.1975	0.19753719	582	sp|P16144-4|ITB4_HUMAN;sp|P16144-2|ITB4_HUMAN;sp|P16144-3|ITB4_HUMAN;sp|P16144|ITB4_HUMAN	yes	no	0	0	1	0	1			1						1	35.637	35.637	4	0.013601	9965	20190902_JH_WT_Ubi_3	50.425	19.997	14262000	0	0	6181500	0	0	0	0	0	8081000			124	582	109	384;385	425;426	426		575		2
AFHSSLHESIQKPYNQK	GlyGly (K)	2127.0498	0.049750745	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN	yes	no	0	0	1	0	1		1				1				22.798	22.798	3	5.6117E-33	4975	20190902_JH_MUT_Ubi_2	187.97	87.742	1726900	0	480840	0	0	0	1246000	0	0	0			125	668	110	386;387	427;428	428		644		2
AFKDTGKTPVEPEVAIHR	Acetyl (Protein N-term);2 GlyGly (K)	2264.1549	0.1549441	1002	sp|P60866|RS20_HUMAN;sp|P60866-2|RS20_HUMAN	yes	no	1	0	2	0	2	1	1	1	1	2	1	1	1	1	31.313	31.313	3;4	0.00014247	6489	20190821_JH_MUT_Ubi	94.922	48.673	1072400000	83286000	80584000	102060000	74011000	56743000	98472000	164600000	183440000	229170000			126	1002	111	388;389;390;391;392;393;394;395;396;397	429;430;431;432;433;434;435;436;437;438;439;440;441;442	434		990;991		14
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	Unmodified	2751.4596	0.45956554	428	sp|P05388-2|RLA0_HUMAN;sp|P05388|RLA0_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1			1		51.835	51.835	3	9.5056E-22	12462	20190902_JH_EV_Ubi_3	131.75	101.86	51987000	5716100	1804200	24119000	3268500	5994400	0	0	11085000	0			127	428	112	398;399;400;401;402;403	443;444;445;446;447;448	445				6
AFLMQHAPANDYLVTSHIHLHVPEGATPK	Unmodified	3193.6131	0.61312284	787	sp|P36776-3|LONM_HUMAN;sp|P36776-2|LONM_HUMAN;sp|P36776|LONM_HUMAN	yes	no	0	0	0	0	0		1	1							37.589	37.589	6	0.012746	8893	20190821_JH_WT_Ubi	38.562	16.029	45251000	0	3588800	41663000	0	0	0	0	0	0			128	787	113	404;405	449;450	450				2
AFQYVETHGEVCPANWTPDSPTIK	Unmodified	2746.2697	0.26971586	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	39.18	39.18	3	1.7176E-23	11637	20190902_JH_WT_Ubi_2	155.71	121.06	53275000	3614500	0	23754000	1245700	1642000	0	0	11270000	11749000			129	724	114	406;407;408;409;410;411	451;452;453;454;455;456;457	455				7
AFTKELDQWVEQLNECK	GlyGly (K)	2251.0579	0.057932169	1054	sp|P62714|PP2AB_HUMAN	yes	yes	0	0	1	0	1		1								45.122	45.122	3	6.0791E-08	11521	20190821_JH_MUT_Ubi	130.21	100.11	1366100	0	1366100	0	0	0	0	0	0	0			130	1054	115	412	458	458		1028;1029		1
AFVHWYVGEGMEEGEFSEAR	Oxidation (M)	2345.0059	0.005896599	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	1	0	1	1	1			1		1	1	38.927	38.927	3	1.6182E-39	11011	20190902_JH_WT_Ubi_3	187.56	153.29	181620000	3953800	12813000	82607000	0	0	6816900	0	36168000	39263000			131	1097;1098;1515;1858	116	413;414;415;416;417;418	459;460;461;462;463;464	464			681	6
AFVHWYVGEGMEEGEFSEAR	Unmodified	2329.011	0.010981977	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0		1	1					1	1	41.879	41.879	3	8.1502E-60	10694	20190821_JH_WT_Ubi	207.05	181.73	60926000	0	5342800	45835000	0	0	0	0	4631500	5116300			132	1097;1098;1515;1858	116	419;420;421;422	465;466;467;468	466				4
AGAAPYVQAFDSLLAGPVAEYLK	Unmodified	2350.2209	0.2208984	1132	sp|Q01518|CAP1_HUMAN	yes	yes	0	0	0	0	0								1		56.585	56.585	3	4.7338E-06	16592	20190902_JH_WT_Ubi_2	89.917	54.277	1740900	0	0	0	0	0	0	0	1740900	0			133	1132	117	423	469	469				1
AGAIAPCEVTVPAQNTGLGPEK	Unmodified	2179.0943	0.094317676	428	sp|P05388-2|RLA0_HUMAN;sp|P05388|RLA0_HUMAN;sp|Q8NHW5|RLA0L_HUMAN	yes	no	0	0	0	0	0			1					1	1	37.371	37.371	3	4.7643E-07	11031	20190902_JH_WT_Ubi_2	104.68	66.791	22618000	0	0	6822600	0	0	0	0	10577000	5218500			134	428	118	424;425;426	470;471;472	471				3
AGDSRNAMNQDMEIGVTPWDPKK	Acetyl (Protein N-term);Oxidation (M)	2617.1901	0.19008533	873	sp|P48544|KCNJ5_HUMAN	yes	yes	1	0	0	1	2		1								45.274	45.274	3	0.0089115	11604	20190821_JH_MUT_Ubi	46.953	8.5512	1223500	0	1223500	0	0	0	0	0	0	0			135	873	119	427	473	473			549	1
AGEAPTENPAPPTQQSSAE	Unmodified	1880.8388	0.8388145	593	sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN	yes	no	0	0	0	0	0			1							28.993	28.993	2	0.00019944	5971	20190821_JH_WT_Ubi	94.487	69.253	3534100	0	0	3534100	0	0	0	0	0	0			136	593	120	428	474	474				1
AGEIKGFTGIDSEYEKPEAPELVLK	GlyGly (K)	2833.4386	0.43855533	197	sp|O43252|PAPS1_HUMAN	yes	yes	0	0	1	0	2	1	1				1				39.753	39.753	4	0.00029853	10136	20190821_JH_EV_Ubi	73.675	45.257	8482500	2027400	2462000	0	0	0	3993100	0	0	0			137	197	121	429;430;431	475;476;477	475		178		3
AGESVLVHGASGGVGLAACQIAR	Unmodified	2179.1168	0.11678445	1183	sp|Q08257-2|QOR_HUMAN;sp|Q08257-3|QOR_HUMAN;sp|Q08257|QOR_HUMAN	yes	no	0	0	0	0	0						1	1			35.217	35.217	3	0.023153	8806	20190902_JH_MUT_Ubi_3	41.257	5.6176	2899900	0	0	0	0	0	1794800	1105000	0	0			138	1183	122	432;433	478;479	479				2
AGFSGGMVVDYPNSAKAK	Oxidation (M);GlyGly (K)	1927.9098	0.90981137	215	sp|O43709|BUD23_HUMAN;sp|O43709-3|BUD23_HUMAN	yes	no	0	0	1	1	1	1	1		1		1	1			28.188	28.188	3	0.00047196	6305	20190902_JH_EV_Ubi_2	91.355	62.37	4835400	702630	776120	0	1268700	0	948670	1139200	0	0			139	215	123	434;435;436;437;438	480;481;482;483;484;485	481		197;198	90	5
AGGGPTLQCPPPSSPEKAASLEYDYETIR	GlyGly (K)	3204.5034	0.5033572	1803	sp|Q96N66-3|MBOA7_HUMAN;sp|Q96N66-2|MBOA7_HUMAN;sp|Q96N66|MBOA7_HUMAN	yes	no	0	0	1	0	1	1	1	1							38.844	38.844	3	1.1786E-20	9674	20190821_JH_EV_Ubi	123.71	79.028	3614600	1080000	459810	2074800	0	0	0	0	0	0			140	1803	124	439;440;441	486;487;488;489	486		1765		4
AGGSASAMLQPLLDNQVGFK	Oxidation (M)	2019.0095	0.0095254139	629	sp|P20618|PSB1_HUMAN	yes	yes	0	0	0	1	0					1				1	42.235	42.235	3	0.002038	10708	20190902_JH_EV_Ubi_3	90.379	46.085	1068100	0	0	0	0	1068100	0	0	0	0			141	629	125	442;443	490;491	490			385	1
AGKEESGVSVSNSQPTNESHSIK	GlyGly (K)	2485.1681	0.16808756	1848	sp|Q99808|S29A1_HUMAN;sp|Q99808-2|S29A1_HUMAN	yes	no	0	0	1	0	1	1				1					20.936	20.936	4	0.014253	4324	20190902_JH_EV_Ubi_3	47.822	29.526	6182300	2552200	0	0	0	3630100	0	0	0	0			142	1848	126	444;445	492;493	493		1805		2
AGKPGLPAPDELVYQVPQSTQEVSGAGR	GlyGly (K)	2964.4941	0.49411315	1805	sp|Q96PD2|DCBD2_HUMAN;sp|Q96PD2-2|DCBD2_HUMAN	yes	no	0	0	1	0	1							1			39.456	39.456	3	3.0539E-05	10192	20190902_JH_MUT_Ubi_3	82.479	44.582	514270	0	0	0	0	0	0	514270	0	0			143	1805	127	446	494	494		1766		1
AGKPVICATQMLESMIK	GlyGly (K)	1990.005	0.0049740829	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	0	1		1					1			45.271	45.271	3	0.0079089	11751	20190821_JH_MUT_Ubi	66.977	31.32	2466500	0	1625700	0	0	0	0	840860	0	0			144	556	128	447;448	495;496	495		541		2
AGKPVICATQMLESMIK	2 Oxidation (M);GlyGly (K)	2021.9948	0.99480333	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	2	1						1	1			33.664	33.664	3	0.0012802	8237	20190902_JH_MUT_Ubi_3	79.317	26.817	5400400	0	0	0	0	0	3304600	2095800	0	0			145	556	128	449;450	497;498	498		541	338;339	2
AGLLHNILPSQSTDLHHSVGTELLSLVYK	Unmodified	3141.6822	0.68224827	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	46.627	46.627	4	6.4111E-11	12693	20190821_JH_WT_Ubi	102.65	84.547	264270000	0	17982000	159850000	0	0	0	0	36801000	49632000			146	1107	129	451;452;453;454	499;500;501;502	500				4
AGLLHNILPSQSTDLHHSVGTELLSLVYK	Deamidation (NQ)	3142.6663	0.66626385	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	1	0	0	0			1							46.809	46.809	3	0.0091255	12746	20190821_JH_WT_Ubi	60.104	17.783	0	0	0	0	0	0	0	0	0	0			147	1107	129	455	503	503	977			1
AGLPCQDLEFVQFHPTGIYGAGCLITEGCR	Unmodified	3365.5631	0.56313746	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN;sp|P31040-3|SDHA_HUMAN	yes	no	0	0	0	0	0			1							49.459	49.459	3	1.7154E-05	13790	20190821_JH_WT_Ubi	79.993	61.745	5679300	0	0	5679300	0	0	0	0	0	0			148	739	130	456	504	504				1
AGLPSKNLTVSQNQSEEFYNGPNR	GlyGly (K);Deamidation (NQ)	2764.3052	0.30524974	182	sp|O15374-4|MOT5_HUMAN;sp|O15374-2|MOT5_HUMAN;sp|O15374-5|MOT5_HUMAN;sp|O15374|MOT5_HUMAN	yes	no	0	1	1	0	1								1		33.879	33.879	3	0.003052	9740	20190902_JH_WT_Ubi_2	81.808	45.354	3549400	0	0	0	0	0	0	0	3549400	0			149	182	131	457	505	505	67	155		1
AGMGDSPGR	Oxidation (M)	862.36032	0.3603152	243	sp|O60423-1|AT8B3_HUMAN;sp|O60423|AT8B3_HUMAN	yes	no	0	0	0	1	0								1		17.233	17.233	2	0.03207	4197	20190902_JH_WT_Ubi_2	60.76	25.654	410770	0	0	0	0	0	0	0	410770	0			150	243	132	458	506	506			104	0
AGPQSPSPGAPPAAKPAR	GlyGly (K)	1769.9173	0.91728001	1935	sp|Q9H1Z9|TSN10_HUMAN	yes	yes	0	0	1	0	1			1					1	1	22.452	22.452	3	8.7358E-05	4217	20190821_JH_WT_Ubi	104.78	67.624	25378000	0	0	6645500	0	0	0	0	9753000	8979700			151	1935	133	459;460;461	507;508;509	507		1872		3
AGQAFTMLQTEGKIPAEAFKQIS	Oxidation (M);GlyGly (K);Deamidation (NQ)	2596.2843	0.28430329	1921	sp|Q9GZY0|NXF2_HUMAN	yes	yes	0	1	1	1	2									1	27.212	27.212	3	0.027991	7145	20190902_JH_WT_Ubi_3	45.88	11.876	0	0	0	0	0	0	0	0	0	0			152	1921	134	462	510	510	1239	1857	1048	1
AGQMVTVWAAGAGVAHSPPSTLVWK	Oxidation (M)	2536.2897	0.28966344	1150	sp|Q03252|LMNB2_HUMAN	yes	yes	0	0	0	1	0			1							41.998	41.998	3	0.0055219	10795	20190821_JH_WT_Ubi	52.769	29.133	2694600	0	0	2694600	0	0	0	0	0	0			153	1150	135	463	511	511			719	1
AGQVVTIWAAGAGATHSPPTDLVWK	Unmodified	2532.3125	0.31250737	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	0	0	0			1			1	1	1	1	44.582	44.582	3	3.2808E-20	11928	20190821_JH_WT_Ubi	142.22	113.33	90631000	0	0	53790000	0	0	4061500	6380500	10934000	15465000			154	390;391	136	464;465;466;467;468	512;513;514;515;516;517;518	515				7
AGSNMLLIGVHGPTTPCEEVSMK	2 Oxidation (M)	2459.1495	0.14946607	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	2	0		1	1	1	1	1		1	1	34.313	34.313	3	7.3458E-12	7827	20190821_JH_WT_Ubi	129.51	91.448	55388000	0	3090200	8996200	5565700	5769000	6498100	0	11143000	14326000			155	282	137	469;470;471;472;473;474;475	519;520;521;522;523;524;525	523			121;122	7
AGSNMLLIGVHGPTTPCEEVSMK	Oxidation (M)	2443.1546	0.15455145	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	1	0		1	1							36.829	36.829	3	0.00016634	8662	20190821_JH_WT_Ubi	81.017	48.836	6163600	0	1697800	4465800	0	0	0	0	0	0			156	282	137	476;477	526;527	527			121;122	2
AGSNMLLIGVHGPTTPCEEVSMK	Unmodified	2427.1596	0.15963682	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0		1					1			39.217	39.217	3	0.0016164	9322	20190821_JH_MUT_Ubi	64.422	23.036	2991400	0	2016500	0	0	0	0	974940	0	0			157	282	137	478;479	528;529	528				2
AGSVPSLAAGLLFGSLAGLGAYQLSQDPR	Unmodified	2815.4868	0.48684292	2084	sp|Q9P0S9|TM14C_HUMAN	yes	yes	0	0	0	0	0		1								57.4	57.4	3	1.1493E-25	15113	20190821_JH_MUT_Ubi	138.57	74.866	1435300	0	1435300	0	0	0	0	0	0	0			158	2084	138	480	530	530				1
AGTFQAFEQFGQQLLAHGHYASPEIK	Unmodified	2874.4089	0.40892695	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	47.202	47.202	4	6.3978E-07	13877	20190902_JH_WT_Ubi_3	91.583	60.614	115970000	0	23630000	23665000	0	0	11638000	5562900	29011000	22465000			159	1262	139	481;482;483;484;485;486	531;532;533;534;535;536	536				6
AGTFQAFEQFGQQLLAHGHYASPEIK	Deamidation (NQ)	2875.3929	0.39294254	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	1	0	0	0								1		48.519	48.519	4	0.0074431	14645	20190902_JH_WT_Ubi_2	55.705	31.157	2074700	0	0	0	0	0	0	0	2074700	0			160	1262	139	487	537	537	1020;1021			1
AGVAAPATQVAQVTLQSVQR	Unmodified	1994.0909	0.090887278	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1	1	1	1	40.827	40.827	3	6.4322E-10	10354	20190821_JH_WT_Ubi	132.79	92.298	68721000	3319700	0	30436000	958990	1202200	1947800	1435000	14121000	15300000			161	1332	140	488;489;490;491;492;493;494;495	538;539;540;541;542;543;544;545;546	544				9
AGVAAPATQVAQVTLQSVQR	Deamidation (NQ)	1995.0749	0.074902863	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	1	0	0	0								1		42.968	42.968	3	0.0059486	12854	20190902_JH_WT_Ubi_2	75.564	48.739	1183400	0	0	0	0	0	0	0	1183400	0			162	1332	140	496	547	547	1042;1043			1
AGVLAHLEEER	Unmodified	1222.6306	0.63060004	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN;sp|P35580|MYH10_HUMAN;sp|P35580-5|MYH10_HUMAN;sp|P35580-2|MYH10_HUMAN;sp|P35580-3|MYH10_HUMAN;sp|P35580-4|MYH10_HUMAN	yes	no	0	0	0	0	0						1				27.949	27.949	3	0.023972	6585	20190902_JH_MUT_Ubi_2	61.815	21.771	1206900	0	0	0	0	0	1206900	0	0	0			163	776	141	497	548	548				1
AGVSISVVHGNLSEEAAK	Unmodified	1766.9163	0.91627696	785	sp|P36551-2|HEM6_HUMAN;sp|P36551|HEM6_HUMAN	yes	no	0	0	0	0	0	1	1	1							31.628	31.628	3	0.00056641	7045	20190821_JH_EV_Ubi	84.508	49.471	11893000	8147100	3746200	0	0	0	0	0	0	0			164	785	142	498;499;500	549;550;551	549				3
AGVVGPELHEQLLSAEK	Unmodified	1775.9418	0.94176342	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0								1		34.252	34.252	3	0.020154	9896	20190902_JH_WT_Ubi_2	49.988	4.1978	13025000	0	0	0	0	0	0	0	13025000	0			165	1332	143	501	552	552				1
AGWNAYIDNLMADGTCQDAAIVGYK	Acetyl (Protein N-term);Oxidation (M)	2774.2316	0.23161579	451	sp|P07737|PROF1_HUMAN;CON__P02584	yes	no	1	0	0	1	0			1						1	55.199	55.199	3	6.4519E-54	15839	20190821_JH_WT_Ubi	193.36	167.49	6374700	0	0	4518200	0	0	0	0	0	1856500			166	451	144	502;503	553;554	553			252	2
AGWNAYIDNLMADGTCQDAAIVGYK	Acetyl (Protein N-term)	2758.2367	0.23670117	451	sp|P07737|PROF1_HUMAN;CON__P02584	yes	no	1	0	0	0	0			1							57.462	57.462	3	1.1153E-10	16305	20190821_JH_WT_Ubi	108.99	88.789	1722900	0	0	1722900	0	0	0	0	0	0			167	451	144	504	555	555				1
AHATTSNTVSKLLEK	GlyGly (K)	1712.9057	0.90571227	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	0	1			1			1				24.494	24.494	2;3	9.2919E-08	4750	20190821_JH_WT_Ubi	141.34	93.735	20470000	0	0	19736000	0	0	734350	0	0	0			168	1476	145	505;506	556;557	557		1486		2
AHAWPSPYKDYEVK	GlyGly (K)	1803.858	0.8580338	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	0	1	0	1		1								28.628	28.628	3	0.006973	5337	20190821_JH_MUT_Ubi	82.202	43.225	0	0	0	0	0	0	0	0	0	0			169	1655	146	507	558	558		1653		1
AHCVTLVQLSISCDHLIDK	Acetyl (Protein N-term)	2250.1137	0.11367291	1849	sp|Q99829|CPNE1_HUMAN	yes	yes	1	0	0	0	0		1	1			1	1	1	1	43.429	43.429	3	1.9594E-72	11018	20190821_JH_MUT_Ubi	222.64	189.29	39681000	0	6397400	24070000	0	0	2336200	1210800	3377900	2288700			170	1849	147	508;509;510;511;512;513	559;560;561;562;563;564	559				6
AHDGGIYAISWSPDSTHLLSASGDK	Unmodified	2584.2194	0.21939485	268	sp|O75083|WDR1_HUMAN;sp|O75083-3|WDR1_HUMAN	yes	no	0	0	0	0	0									1	40.318	40.318	3	1.0267E-06	11589	20190902_JH_WT_Ubi_3	91.238	61.854	1389800	0	0	0	0	0	0	0	0	1389800			171	268	148	514	565	565				1
AHEPTYFTVDCAEAGQGDVSIGIK	Unmodified	2564.1853	0.18531753	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0		1	1						1	39.327	39.327	3	1.2772E-09	9654	20190821_JH_WT_Ubi	113.71	75.309	12141000	0	1169500	7727400	0	0	0	0	0	3244600			172	637	149	515;516;517	566;567;568	567				3
AHIANPSGASTECFVTDNADGTYQVEYTPFEK	Unmodified	3518.5572	0.55724327	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	41.018	41.018	3	2.3885E-06	10318	20190821_JH_WT_Ubi	80.751	57.542	17046000	0	724140	8886200	0	0	0	0	4101900	3333200			173	282	150	518;519;520;521	569;570;571;572	570				4
AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR	Unmodified	3533.859	0.85904343	862	sp|P46937-5|YAP1_HUMAN;sp|P46937-3|YAP1_HUMAN;sp|P46937-6|YAP1_HUMAN;sp|P46937-7|YAP1_HUMAN;sp|P46937-2|YAP1_HUMAN;sp|P46937-8|YAP1_HUMAN;sp|P46937|YAP1_HUMAN;sp|P46937-9|YAP1_HUMAN	yes	no	0	0	0	0	0		1					1			39.31	39.31	4	0.0096372	9920	20190902_JH_MUT_Ubi_3	45.267	26.302	4293600	0	1520700	0	0	0	0	2773000	0	0			174	862	151	522;523	573;574	574				1
AHTDSLNTLVALHQLYQYTQK	Unmodified	2443.2496	0.24957276	169	sp|O15031|PLXB2_HUMAN	yes	yes	0	0	0	0	0									1	41.923	41.923	4	0.031317	12165	20190902_JH_WT_Ubi_3	35.023	15.731	3149700	0	0	0	0	0	0	0	0	3149700			175	169	152	524	575	575				1
AHVEAPIAGSMVLAAVLLK	Oxidation (M)	1905.0758	0.075754486	395	sp|P03905|NU4M_HUMAN	yes	yes	0	0	0	1	0	1								1	46.339	46.339	3	1.8369E-72	12632	20190821_JH_EV_Ubi	226.39	195.82	6462800	3842000	0	0	0	0	0	0	0	2620800			176	395	153	525;526	576;577	576			185	2
AHVEAPIAGSMVLAAVLLK	Unmodified	1889.0808	0.080839863	395	sp|P03905|NU4M_HUMAN	yes	yes	0	0	0	0	0	1									50.964	50.964	3	5.0698E-09	13800	20190821_JH_EV_Ubi	126.16	91.043	1182500	1182500	0	0	0	0	0	0	0	0			177	395	153	527	578	578				1
AIAEGLGSELLVGTTKNALLR	GlyGly (K)	2239.2536	0.25359551	1406	sp|Q32P44|EMAL3_HUMAN;sp|Q32P44-2|EMAL3_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	44.774	44.774	3	3.2392E-08	11506	20190821_JH_MUT_Ubi	112.01	76.707	33524000	3785600	6292900	7072900	0	1245500	4523000	4737800	2823100	3042900			178	1406	154	528;529;530;531;532;533;534;535	579;580;581;582;583;584;585;586	581		1429		8
AIAELGIYPAVDPLDSTSR	Unmodified	1987.0262	0.026221336	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	0	0									1	49.286	49.286	3	0.005565	14420	20190902_JH_WT_Ubi_3	61.87	35.509	2466000	0	0	0	0	0	0	0	0	2466000			179	433	155	536	587	587				1
AIAGGDEKGAAQVAAVLAQHR	GlyGly (K)	2146.1243	0.12431267	1928	sp|Q9H0F6-2|SHRPN_HUMAN;sp|Q9H0F6|SHRPN_HUMAN	yes	no	0	0	1	0	1				1						33.572	33.572	3	0.023891	8081	20190902_JH_EV_Ubi_2	47.729	26.79	1054900	0	0	0	1054900	0	0	0	0	0			180	1928	156	537	588	588		1864		1
AIAIASDMQDDFISPCGACR	Oxidation (M)	2212.9551	0.95512336	754	sp|P32320|CDD_HUMAN	yes	yes	0	0	0	1	0									1	39.86	39.86	3	0.0028532	11454	20190902_JH_WT_Ubi_3	68.187	28.338	2192400	0	0	0	0	0	0	0	0	2192400			181	754	157	538	589	589			474	1
AIAKGVGIISEGNETVEDIAAR	GlyGly (K)	2326.2129	0.21285291	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|P50993|AT1A2_HUMAN	yes	no	0	0	1	0	1							1			37.668	37.668	3	0.0025823	9601	20190902_JH_MUT_Ubi_3	65.454	22.737	1664100	0	0	0	0	0	0	1664100	0	0			182	418	158	539	590	590		388		1
AIATTVTYPLQTVQSILR	Unmodified	1974.115	0.11497676	220	sp|O43808|PM34_HUMAN	yes	yes	0	0	0	0	0		1								51.502	51.502	2	0.012278	13633	20190821_JH_MUT_Ubi	61.038	30.6	552610	0	552610	0	0	0	0	0	0	0			183	220	159	540	591	591				1
AIEPQKEEADENYNSVNTR	GlyGly (K)	2320.0567	0.056746196	1198	sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN	yes	no	0	0	1	0	1				1					1	25.567	25.567	3	0.0095434	5529	20190902_JH_EV_Ubi_2	60.334	33.299	9325700	0	0	0	1529500	0	0	0	0	7796300			184	1198	160	541;542	592;593	592		1264		2
AIGAVPLIQGEYMIPCEK	Oxidation (M)	2004.006	0.0060199404	445	sp|P07339|CATD_HUMAN	yes	yes	0	0	0	1	0								1	1	44.75	44.75	2	0.025414	13465	20190902_JH_WT_Ubi_2	54.094	15.728	9251000	0	0	0	0	0	0	0	5025300	4225700			185	445	161	543;544	594;595	594			246	0
AIGGGLSSVGGGSSTIKYTTTSSSSR	GlyGly (K)	2531.2463	0.24633788	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	30.91	30.91	3	8.8988E-16	7584	20190902_JH_MUT_Ubi_2	130.83	81.781	41188000	2139100	6280300	5380200	1204900	1264400	11185000	5383300	4025900	4325100		+	186	3	162	545;546;547;548;549;550;551;552;553	596;597;598;599;600;601;602;603;604	600		1		9
AIGISNFNHLQVEMILNK	Oxidation (M)	2056.0775	0.0775454	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	1	0		1	1					1	1	42.319	42.319	3	7.3125E-06	10870	20190821_JH_WT_Ubi	112.57	76.7	154630000	0	2671600	72692000	0	0	0	0	38608000	40662000			187	563	163	554;555;556;557	605;606;607;608	606			352	4
AIGISNFNHLQVEMILNK	Deamidation (NQ)	2041.0666	0.066646362	563	sp|P15121|ALDR_HUMAN	yes	yes	0	1	0	0	0			1							46.419	46.419	3	0.030681	12593	20190821_JH_WT_Ubi	55.011	18.818	4258500	0	0	4258500	0	0	0	0	0	0			188	563	163	558	609;610	610	211			2
AIMVKGVDEATIIDILTK	Oxidation (M);GlyGly (K)	2059.1235	0.12349254	402	sp|P04083|ANXA1_HUMAN	yes	yes	0	0	1	1	1			1							48.561	48.561	3	0.0057238	13457	20190821_JH_WT_Ubi	88.19	60.693	0	0	0	0	0	0	0	0	0	0			189	402	164	559	611	611		371	195	1
AINLQMFHKAQNAESSLQQK	GlyGly (K);3 Deamidation (NQ)	2402.1536	0.15362347	1825	sp|Q96T51-2|RUFY1_HUMAN;sp|Q96T51|RUFY1_HUMAN	yes	no	0	3	1	0	1			1							29.516	29.516	3	0.020225	6180	20190821_JH_WT_Ubi	47.113	10.867	3846600	0	0	3846600	0	0	0	0	0	0			190	1825	165	560	612	612	587;588;1201	1788		1
AIPDLTAPVAAVQAAVSNLVR	Unmodified	2075.1739	0.17388863	610	sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1			56.73	56.73	3	3.8677E-05	15031	20190821_JH_MUT_Ubi	86.439	55.466	17473000	501160	4899400	3113700	0	0	1524500	7434400	0	0			191	610	166	561;562;563;564;565	613;614;615;616;617;618	615				6
AIPQSRTYQPHLVYVGDQK	GlyGly (K)	2313.1866	0.18657858	46		yes	no	0	0	1	0	1	1									44.226	44.226	3	0.025183	11807	20190821_JH_EV_Ubi	48.848	16.159	1663800	1663800	0	0	0	0	0	0	0	0	+		192	46	167	566	619	619		51		1
AIQQAVGSSLQGDLPNDKDGSR	GlyGly (K)	2369.1571	0.15712894	1968	sp|Q9H7N4|SFR19_HUMAN	yes	yes	0	0	1	0	1									1	31.584	31.584	3	0.0017982	8627	20190902_JH_WT_Ubi_3	69.07	48.178	2501000	0	0	0	0	0	0	0	0	2501000			193	1968	168	567	620	620		1900		1
AISHEHSPSDLEAHFVPLVK	Unmodified	2212.1277	0.12766671	731	sp|P30153|2AAA_HUMAN	yes	yes	0	0	0	0	0			1						1	33.061	33.061	4	0.0024899	7389	20190821_JH_WT_Ubi	65.298	42.864	16617000	0	0	7914500	0	0	0	0	0	8702900			194	731	169	568;569	621;622	621				2
AITIAGIPQSIIECVK	Unmodified	1711.9542	0.95424237	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	0	0	0	0								1		49.354	49.354	2	0.028629	14800	20190902_JH_WT_Ubi_2	56.551	13.132	1328500	0	0	0	0	0	0	0	1328500	0			195	1342	170	570	623	623				0
AITIAGVPQSVTECVK	Unmodified	1671.8866	0.88655673	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	0	0	0							1			39.022	39.022	2	0.0018844	9996	20190902_JH_MUT_Ubi_3	86.756	49.06	1785100	0	0	0	0	0	0	1785100	0	0			196	1341	171	571	624	624				1
AITSGGITYQDQPWHADCFVCVTCSK	Unmodified	3000.3204	0.32044758	1258	sp|Q13642-1|FHL1_HUMAN;sp|Q13642-5|FHL1_HUMAN;sp|Q13642-4|FHL1_HUMAN;sp|Q13642|FHL1_HUMAN	yes	no	0	0	0	0	0		1								41.757	41.757	3	0.031947	10232	20190821_JH_MUT_Ubi	33.342	11.726	814520	0	814520	0	0	0	0	0	0	0			197	1258	172	572	625	625				1
AITVFSPDGHLFQVEYAQEAVK	Unmodified	2448.2325	0.23252572	156	sp|O14818|PSA7_HUMAN;sp|O14818-4|PSA7_HUMAN;sp|Q8TAA3-2|PSMA8_HUMAN;sp|Q8TAA3-5|PSMA8_HUMAN;sp|Q8TAA3|PSMA8_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1		1	1	1	45.53	45.53	3	2.9967E-22	11836	20190821_JH_MUT_Ubi	153.36	121.24	40380000	6379500	4600000	13543000	1301700	1235300	0	1818800	6256900	5244100			198	156	173	573;574;575;576;577;578;579;580	626;627;628;629;630;631;632;633;634;635	630				10
AIVDALPPPCESACTVPTDVDK	Unmodified	2354.1134	0.11339814	1334	sp|Q15181|IPYR_HUMAN	yes	yes	0	0	0	0	0								1		41.333	41.333	3	0.0067615	12293	20190902_JH_WT_Ubi_2	55.588	22.662	2401700	0	0	0	0	0	0	0	2401700	0			199	1334	174	581	636	636				1
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK	Unmodified	3650.699	0.69897902	1264;105	sp|O00148-3|DX39A_HUMAN;sp|O00148-2|DX39A_HUMAN;sp|O00148|DX39A_HUMAN;sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN	no	no	0	0	0	0	0			1							46.222	46.222	4	0.0048202	12500	20190821_JH_WT_Ubi	43.306	21.74	3712600	0	0	3712600	0	0	0	0	0	0			200	105;1264	175	582	637	637				1
AIVHAVGQELQVTGPFNLQLIAK	Unmodified	2445.3744	0.37437935	701	sp|P27708|PYR1_HUMAN	yes	yes	0	0	0	0	0		1	1				1			47.013	47.013	3	1.1882E-11	12881	20190821_JH_WT_Ubi	124.82	96.876	17717000	0	7210500	9880200	0	0	0	626330	0	0			201	701	176	583;584;585	638;639;640	640				3
AKAAAMAAAAAETSQR	Oxidation (M);GlyGly (K)	1647.7999	0.79986699	2039	sp|Q9NV92|NFIP2_HUMAN	yes	yes	0	0	1	1	1	1	1		1	1	1	1		1	19.614	19.614	3	1.2974E-18	4048	20190902_JH_EV_Ubi_3	159.41	93.603	67063000	0	4953600	0	4728100	7136600	15425000	15989000	0	18830000			202	2039	177	586;587;588;589;590;591;592	641;642;643;644;645;646;647	643		1933	1096	7
AKAAAMAAAAAETSQR	GlyGly (K)	1631.805	0.80495237	2039	sp|Q9NV92|NFIP2_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	24.201	24.201	3	5.8941E-10	6472	20190902_JH_WT_Ubi_2	141.34	91.71	31244000	0	4926500	4770200	0	0	3691200	5577100	9696800	2582800			203	2039	177	593;594;595;596;597;598	648;649;650;651;652;653	652		1933		6
AKAAEMVPDLPSPPMEAPAPASNPSGR	2 Oxidation (M);GlyGly (K)	2833.3375	0.33747785	1509	sp|Q6ZVM7-3|TM1L2_HUMAN;sp|Q6ZVM7-5|TM1L2_HUMAN;sp|Q6ZVM7|TM1L2_HUMAN;sp|Q6ZVM7-4|TM1L2_HUMAN;sp|Q6ZVM7-2|TM1L2_HUMAN	yes	no	0	0	1	2	1				1	1		1			33.753	33.753	3	1.8521E-20	8233	20190902_JH_MUT_Ubi_3	136.37	102.36	2211600	0	0	0	883440	551180	0	776950	0	0			204	1509	178	599;600;601	654;655;656;657;658	658		1508	908;909	5
AKAPSWAGVGALAYK	Acetyl (Protein N-term);GlyGly (K)	1644.8624	0.86239089	1920	sp|Q9GZV1-2|ANKR2_HUMAN;sp|Q9GZV1|ANKR2_HUMAN	yes	no	1	0	1	0	1						1				41.357	41.357	2	0.0078977	11762	20190902_JH_MUT_Ubi_2	73.082	40.584	976260	0	0	0	0	0	976260	0	0	0			205	1920	179	602	659	659		1856		1
AKDTSSEEVNLSHIVPCEPVPEEK	GlyGly (K)	2807.3284	0.32835295	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	1	1			1						35.141	35.141	3	7.2625E-05	8476	20190821_JH_EV_Ubi	84.156	49.681	3700700	2197700	0	0	1503000	0	0	0	0	0			206	1603	180	603;604	660;661	660		1597;1598		2
AKDTSSEEVNLSHIVPCEPVPEEK	GlyGly (K);Deamidation (NQ)	2808.3124	0.31236853	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	1	1	0	1							1			34.566	34.566	4	0.0050345	8555	20190902_JH_MUT_Ubi_3	52.72	23.084	2652500	0	0	0	0	0	0	2652500	0	0			207	1603	180	605	662	662	522	1597;1598		1
AKEITQQLR	GlyGly (K)	1199.6622	0.66223452	55		yes	yes	0	0	1	0	1						1				22.065	22.065	3	0.004403	4907	20190902_JH_MUT_Ubi_2	111.95	11.26	2075000	0	0	0	0	0	2075000	0	0	0	+		208	55	181	606	663	663		56		1
AKFFPEDVSEELIQEITQR	GlyGly (K)	2392.1911	0.19105483	773	sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN	yes	no	0	0	1	0	1		1								52.323	52.323	3	0.016987	13829	20190821_JH_MUT_Ubi	63.894	35.244	0	0	0	0	0	0	0	0	0	0			209	773	182	607	664	664		758		1
AKFYPEDVSEELIQDITQR	GlyGly (K)	2394.1703	0.17031939	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	1	0	1		1								49.063	49.063	3	0.0072175	12900	20190821_JH_MUT_Ubi	62.438	34.26	362350	0	362350	0	0	0	0	0	0	0			210	686	183	608	665	665		673		1
AKIQDKEGIPPDQQR	2 GlyGly (K)	1949.9919	0.99190151	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	2	0	2									1	20.451	20.451	3	0.011178	5106	20190902_JH_WT_Ubi_3	81.703	37.89	0	0	0	0	0	0	0	0	0	0			211	1074	184	609	666	666		1050;1051		1
AKLEAAIAEAEER	GlyGly (K)	1513.7736	0.77363546	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1		1	1			1	1	1	1	30.263	30.263	3	0.0020499	6048	20190821_JH_MUT_Ubi	101.43	50.422	24975000	0	3395200	4622100	0	0	4855400	4723400	3798200	3580900		+	212	8;19	185	610;611;612;613;614;615	667;668;669;670;671;672	667		24		6
AKPPPGGGEQEPPPPPAPQDVEMK	Oxidation (M)	2465.1897	0.18967462	196	sp|O43242|PSMD3_HUMAN	yes	yes	0	0	0	1	1			1					1		27.388	27.388	3	3.3177E-07	5485	20190821_JH_WT_Ubi	99.923	54.554	3581500	0	0	1599400	0	0	0	0	1982100	0			213	196	186	616;617	673;674;675	673			80	3
AKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK	Oxidation (M);GlyGly (K)	3996.8283	0.82833275	196	sp|O43242|PSMD3_HUMAN	yes	yes	0	0	1	1	2				1					1	29.765	29.765	4	6.6014E-06	8036	20190902_JH_WT_Ubi_3	68.562	48.66	5691100	0	0	0	2335000	0	0	0	0	3356000			214	196	187	618;619	676;677	677		176;177	80	2
AKTALPAQSAATLPAR	GlyGly (K)	1679.9319	0.93186744	1129	sp|Q01082|SPTB2_HUMAN	yes	yes	0	0	1	0	1		1								27.694	27.694	3	0.00043226	4995	20190821_JH_MUT_Ubi	101.2	73.74	2056600	0	2056600	0	0	0	0	0	0	0			215	1129	188	620	678	678		1119		1
AKTGGAYGEDLGADYNLSQVCDGK	GlyGly (K)	2602.1606	0.16055934	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			34.466	34.466	3	5.6675E-112	8268	20190821_JH_EV_Ubi	243.21	211.03	27399000	6016600	3699600	2532300	3520100	3908900	4390600	3331400	0	0			216	881	189	621;622;623;624;625;626;627	679;680;681;682;683;684;685;686;687	679		858		9
AKTQDGVALEIQPLNSQEGIDNEEK	GlyGly (K)	2839.3836	0.38355964	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN;sp|P23634-5|AT2B4_HUMAN;sp|P23634-4|AT2B4_HUMAN;sp|P23634-3|AT2B4_HUMAN;sp|P23634-2|AT2B4_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1		36.513	36.513	3	6.9114E-44	9119	20190902_JH_MUT_Ubi_3	180.21	141.94	30958000	3674000	5467900	6191000	0	1934500	5658100	4988500	3044000	0			217	668	190	628;629;630;631;632;633;634	688;689;690;691;692;693;694	692		645;646		7
AKYLATSQPRPDSSGSH	GlyGly (K)	1914.9184	0.91840222	1914	sp|Q9C0H2-3|TTYH3_HUMAN;sp|Q9C0H2-2|TTYH3_HUMAN;sp|Q9C0H2|TTYH3_HUMAN	yes	no	0	0	1	0	2								1		20.703	20.703	4	0.018114	5187	20190902_JH_WT_Ubi_2	52.823	19.027	6017200	0	0	0	0	0	0	0	6017200	0			218	1914	191	635	695	695		1849		1
ALAAPAAEEKEEAR	GlyGly (K)	1568.7794	0.77944912	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1		1	22.43	22.43	3	0.00070635	4945	20190902_JH_MUT_Ubi_2	106.54	72.157	718620000	53064000	44490000	104850000	60456000	100160000	56830000	79640000	0	219120000			219	1133	192	636;637;638;639;640;641;642;643	696;697;698;699;700;701;702;703	700		1128		8
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK	Unmodified	3807.9214	0.92138569	426	sp|P05386|RLA1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	2	1	1	1	1	2	48.395	48.395	3;4	2.7994E-14	14155	20190902_JH_WT_Ubi_3	96.931	74.692	172360000	34212000	14530000	47325000	8836900	9380300	11110000	8710100	8519800	29730000			220	426	193	644;645;646;647;648;649;650;651;652;653;654	704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719	718				15
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK	Deamidation (NQ)	3808.9054	0.90540128	426	sp|P05386|RLA1_HUMAN	yes	yes	0	1	0	0	0									1	49.777	49.777	3	3.6317E-06	14591	20190902_JH_WT_Ubi_3	60.848	41.473	591510	0	0	0	0	0	0	0	0	591510			221	426	193	655	720	720	149			1
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK	GlyGly (K)	4050.0593	0.059276159	426	sp|P05386|RLA1_HUMAN	yes	yes	0	0	1	0	1		1				1				44.537	44.537	4	2.2151E-06	11398	20190821_JH_MUT_Ubi	55.144	39.483	3980100	0	2461500	0	0	0	1518600	0	0	0			222	426	194	656;657	721;722	721		404		2
ALASGTEASSTDPGAPGGPGGAEGPMAKK	Oxidation (M);GlyGly (K)	2698.2504	0.25043698	1385	sp|Q16763|UBE2S_HUMAN	yes	yes	0	0	1	1	1						1				25.288	25.288	3	1.5407E-07	5754	20190902_JH_MUT_Ubi_2	95.835	63.055	802500	0	0	0	0	0	802500	0	0	0			223	1385	195	658	723;724	723		1422;1423	859	2
ALDGPEQMELEEGKAGSGLR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2258.0485	0.048489695	1039	sp|P62195|PRS8_HUMAN	yes	yes	1	0	1	1	1					1					37.669	37.669	3	0.028583	9303	20190902_JH_EV_Ubi_3	46.514	21.56	827490	0	0	0	0	827490	0	0	0	0			224	1039	196	659	725	725		1015	640	0
ALDTMNFDVIKGK	Oxidation (M);GlyGly (K)	1580.7868	0.78684269	1230	sp|Q13310-2|PABP4_HUMAN;sp|Q13310|PABP4_HUMAN;sp|Q13310-3|PABP4_HUMAN;sp|P11940-2|PABP1_HUMAN;sp|P11940|PABP1_HUMAN	yes	no	0	0	1	1	1						1	1			31.986	31.986	3	0.00013218	8089	20190902_JH_MUT_Ubi_2	126.71	93.024	3240400	0	0	0	0	0	2043000	1197400	0	0			225	1230	197	660;661	726;727	726		1298	772	2
ALEDINRLWEFQEAISGFLAALPLIR	Unmodified	2984.6124	0.61237779	716	sp|P29590-11|PML_HUMAN;sp|P29590|PML_HUMAN	yes	no	0	0	0	0	1			1							54.373	54.373	5	0.032934	15606	20190821_JH_WT_Ubi	34.914	19.392	710000	0	0	710000	0	0	0	0	0	0			226	716	198	662	728	728				0
ALESPERPFLAILGGAKVADK	GlyGly (K)	2295.2587	0.25868089	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	0	2	1		1							41.336	41.336	4	0.0079465	10451	20190821_JH_WT_Ubi	56.553	31.768	12815000	2278900	0	10536000	0	0	0	0	0	0			227	383	199	663;664	729;730	730		344		2
ALGALVDSCAPGLCPDWESWDPQK	Unmodified	2671.2047	0.20467276	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1							51.293	51.293	3	0.0015587	14466	20190821_JH_WT_Ubi	62.823	27.387	2268400	0	0	2268400	0	0	0	0	0	0			228	282	200	665	731	731				1
ALGLGVEQLPVVFEDVVLHQATILPK	Unmodified	2784.579	0.57895239	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0		1				1			1	55.9	55.9	3	0.010586	15285	20190902_JH_MUT_Ubi_2	46.154	32.521	6934000	0	4869300	0	0	0	1443100	0	0	621590			229	881	201	666;667;668	732;733;734	733				3
ALGQNPTNAEVLKVLGNPK	GlyGly (K)	2076.1328	0.13275209	999	sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN;sp|P14649|MYL6B_HUMAN	yes	no	0	0	1	0	1				1	1				1	37.047	37.047	3	8.5295E-05	9167	20190902_JH_EV_Ubi_2	99.663	42.629	10418000	0	0	0	1578200	4098100	0	0	0	4742100			230	999	202	669;670;671	735;736;737	735		978		3
ALHIYNAPFIKGVNK	GlyGly (K)	1797.989	0.98898839	38		yes	yes	0	0	1	0	1									1	43.762	43.762	3	0.0099847	12786	20190902_JH_WT_Ubi_3	70.412	13.843	3176200	0	0	0	0	0	0	0	0	3176200	+		231	38	203	672	738	738		49		1
ALHSPQYIFGDFSPDEFNQFFVTPR	Acetyl (Protein N-term)	3000.4083	0.40825825	1302	sp|Q14694|UBP10_HUMAN	yes	yes	1	0	0	0	0								1		56.727	56.727	3	0.00046206	16615	20190902_JH_WT_Ubi_2	68.895	35.999	556730	0	0	0	0	0	0	0	556730	0			232	1302	204	673	739	739				1
ALIPLALEGTDVGQTKAAQALAK	GlyGly (K)	2392.3326	0.33257411	1948	sp|Q9H3U1-2|UN45A_HUMAN;sp|Q9H3U1|UN45A_HUMAN	yes	no	0	0	1	0	1	1					1	1			43.01	43.01	3	0.0043892	11288	20190902_JH_MUT_Ubi_3	60.564	30.482	7316900	2399700	0	0	0	0	2881300	2036000	0	0			233	1948	205	674;675;676	740;741;742	742		1883;1884		3
ALKGQFNFDHPDAFDNELILK	GlyGly (K)	2545.2601	0.26013745	1912	sp|Q9BZX2|UCK2_HUMAN	yes	yes	0	0	1	0	1			1				1			41.511	41.511	4	0.0011434	10787	20190902_JH_MUT_Ubi_3	71.685	43.483	9211500	0	0	7085900	0	0	0	2125700	0	0			234	1912	206	677;678	743;744	743		1847		2
ALLDSLQLGPDSLTVHLIHEVTK	Unmodified	2498.3744	0.37443893	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	0	1	1	1							50.582	50.582	4	0.016502	13744	20190821_JH_EV_Ubi	43.328	26.397	29183000	3098700	9535200	16549000	0	0	0	0	0	0			235	1304	207	679;680;681	745;746;747	745				3
ALLELQLEPEELYQTFQR	Unmodified	2219.1474	0.1473991	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0			1							53.858	53.858	3	0.0098254	15395	20190821_JH_WT_Ubi	58.158	17.644	3427000	0	0	3427000	0	0	0	0	0	0			236	545	208	682	748	748				1
ALLVTASQCQQPAENK	Unmodified	1756.8778	0.87778296	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	0	0	0	0			1							29.436	29.436	3	0.010781	6157	20190821_JH_WT_Ubi	61.444	28.877	4262500	0	0	4262500	0	0	0	0	0	0			237	1132	209	683	749	749				1
ALMLQGVDLLADAVAVTMGPK	2 Oxidation (M)	2144.1221	0.12211233	515	sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN	yes	no	0	0	0	2	0	1	1	1	1	1	1	1	1	1	54.376	54.376	3	5.3169E-68	13819	20190902_JH_MUT_Ubi_3	214.66	163.39	84898000	3008700	5478800	31973000	1292100	1857600	6765400	4934400	11984000	17604000			238	515	210	684;685;686;687;688;689;690;691;692	750;751;752;753;754;755;756;757;758	755			296;297	8
ALMLQGVDLLADAVAVTMGPK	Oxidation (M)	2128.1272	0.12719771	515	sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN	yes	no	0	0	0	1	0	1	1	1			1	1	1	1	55.528	55.528	3	3.0668E-22	15930	20190821_JH_WT_Ubi	155.86	126.18	15512000	407830	3165000	8309100	0	0	1395000	266170	769780	1198800			239	515	210	693;694;695;696;697;698;699	759;760;761;762;763;764;765;766;767	765			296;297	9
ALNGAEVDDFSWEPPTEAETKVLQAR	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	3029.4254	0.42542446	228	sp|O60232|SSA27_HUMAN	yes	yes	1	1	1	0	1	1	1					1		1	52.143	52.143	3	0.00012661	15131	20190902_JH_WT_Ubi_3	77.575	52.419	4251200	500860	1455100	0	0	0	0	664050	0	1631100			240	228	211	700;701;702;703	768;769;770;771;772	772	71	204		5
ALNILQSTNMAFGK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1637.8083	0.80830641	817	sp|P40937-2|RFC5_HUMAN;sp|P40937|RFC5_HUMAN	yes	no	0	1	1	1	0	1									24.7	24.7	3	0.03067	4511	20190821_JH_EV_Ubi	49.12	9.0074	2022600	2022600	0	0	0	0	0	0	0	0			241	817	212	704	773	773	917		519	1
ALNVEPDGTGLTCSLAPNIISQL	Unmodified	2382.2101	0.21007572	723	sp|P30044-2|PRDX5_HUMAN;sp|P30044|PRDX5_HUMAN;sp|P30044-3|PRDX5_HUMAN;sp|P30044-4|PRDX5_HUMAN	yes	no	0	0	0	0	0									1	56.195	56.195	3	1.1796E-06	15927	20190902_JH_WT_Ubi_3	97.662	61.99	609210	0	0	0	0	0	0	0	0	609210			242	723	213	705	774	774				1
ALPKLTVPFLLLQGSADR	GlyGly (K)	2052.1732	0.17316034	1841	sp|Q99685|MGLL_HUMAN;sp|Q99685-2|MGLL_HUMAN	yes	no	0	0	1	0	1		1				1				49.938	49.938	3	0.0042892	14259	20190902_JH_MUT_Ubi_2	70.334	52.172	1525200	0	821730	0	0	0	703470	0	0	0			243	1841	214	706;707	775;776	776		1800		2
ALQEAEQSKVLSAVEDR	GlyGly (K)	1986.0018	0.0017974991	1798	sp|Q96LD4|TRI47_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1			33.275	33.275	3	2.8054E-05	7201	20190821_JH_MUT_Ubi	111.33	72.959	11987000	2760900	1702300	1796600	1679600	0	2327200	1720200	0	0			244	1798	215	708;709;710;711;712;713	777;778;779;780;781;782	779		1759		6
ALQSHSVMESK	Oxidation (M)	1231.5867	0.58668632	1594	sp|Q8IYY4-2|DZI1L_HUMAN;sp|Q8IYY4|DZI1L_HUMAN	yes	no	0	0	0	1	0								1		25.552	25.552	2	0.032039	6835	20190902_JH_WT_Ubi_2	54.982	8.5197	1423500	0	0	0	0	0	0	0	1423500	0			245	1594	216	714	783	783			937	0
ALSITLVQEPPPVSTVVHFK	Unmodified	2161.2147	0.21469081	1463	sp|Q68CZ2-2|TENS3_HUMAN;sp|Q68CZ2|TENS3_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1	1			45.391	45.391	3	1.3899E-13	12367	20190821_JH_EV_Ubi	136.35	108.29	18569000	9501400	3506600	0	1122100	749510	2027100	1662700	0	0			246	1463	217	715;716;717;718;719;720	784;785;786;787;788;789	784				6
ALTVPELTQQVFDAK	Unmodified	1658.8879	0.88793694	448	sp|P07437|TBB5_HUMAN	yes	yes	0	0	0	0	0			2					1	1	46.825	46.825	2;3	1.5797E-15	12751	20190821_JH_WT_Ubi	164.92	116.88	16729000	0	0	13666000	0	0	0	0	1037700	2025900			247	448	218	721;722;723;724	790;791;792;793	791				4
ALVAIGTHDLDTLSGPFTYTAK	Unmodified	2290.1845	0.18451289	2026	sp|Q9NSD9-2|SYFB_HUMAN;sp|Q9NSD9|SYFB_HUMAN	yes	no	0	0	0	0	0			1							45.4	45.4	3	0.00024816	12218	20190821_JH_WT_Ubi	78.088	17.524	5085000	0	0	5085000	0	0	0	0	0	0			248	2026	219	725	794	794				1
ALVAMNENLK	Oxidation (M)	1117.5801	0.58014438	1421	sp|Q567U6|CCD93_HUMAN	yes	yes	0	0	0	1	0			1							27.735	27.735	3	0.031974	5623	20190821_JH_WT_Ubi	61.765	14.059	3604000	0	0	3604000	0	0	0	0	0	0			249	1421	220	726	795	795			873	1
ALVLIAFAQYLQQCPFEDHVK	Unmodified	2489.2777	0.27770177	4	sp|P02768-3|ALBU_HUMAN;sp|P02768|ALBU_HUMAN;CON__P02768-1	yes	no	0	0	0	0	0	1	1								53.9	53.9	3	1.2109E-05	14350	20190821_JH_MUT_Ubi	88.385	67.76	9264600	3829500	5435100	0	0	0	0	0	0	0		+	250	4	221	727;728	796;797	797				2
ALYDAELSQMQTHISDTSVVLSMDNNR	2 Oxidation (M)	3069.4019	0.4019286	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN	yes	no	0	0	0	2	0			1					1	1	39.113	39.113	3	1.684E-76	11598	20190902_JH_WT_Ubi_2	208.61	75.463	12286000	0	0	4642700	0	0	0	0	4011700	3631900		+	251	3	222	729;730;731	798;799;800	799			2;3	3
ALYDAELSQMQTHISDTSVVLSMDNNR	Unmodified	3037.4121	0.41209935	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN	yes	no	0	0	0	0	0			1							46.736	46.736	3	0.00010106	12725	20190821_JH_WT_Ubi	74.873	41.531	4060300	0	0	4060300	0	0	0	0	0	0		+	252	3	222	732	801	801				1
ALYDAELSQMQTHISDTSVVLSMDNNR	2 Oxidation (M);Deamidation (NQ)	3070.3859	0.38594418	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN	yes	no	0	1	0	2	0									1	39.882	39.882	3	1.0809E-11	11476	20190902_JH_WT_Ubi_3	110.89	43.054	1299100	0	0	0	0	0	0	0	0	1299100		+	253	3	222	733	802	802	1		2;3	1
AMAAAAQDKGQVGPGAGPLELEGVK	Oxidation (M);GlyGly (K)	2494.2486	0.24858649	1468	sp|Q6EMK4|VASN_HUMAN	yes	yes	0	0	1	1	1	1	1		1	1	1	1	1	1	33.415	33.415	3	1.7572E-43	8543	20190902_JH_MUT_Ubi_2	177.24	148.5	75788000	16112000	6508800	0	14006000	19414000	8017700	5835300	3207800	2686500			254	1468	223	734;735;736;737;738;739;740;741	803;804;805;806;807;808;809;810	807		1478;1479	894	8
AMAAAAQDKGQVGPGAGPLELEGVK	GlyGly (K)	2478.2537	0.25367186	1468	sp|Q6EMK4|VASN_HUMAN	yes	yes	0	0	1	0	1		1		1		1	1			34.931	34.931	3	1.113E-19	9185	20190902_JH_MUT_Ubi_2	135.33	78.323	8259200	0	2039300	0	1481900	0	2614300	2123700	0	0			255	1468	223	742;743;744;745	811;812;813;814	813		1478;1479		4
AMAAAAQDKGQVGPGAGPLELEGVKVPLEPGPK	Oxidation (M);2 GlyGly (K)	3425.7613	0.76130322	1468	sp|Q6EMK4|VASN_HUMAN	yes	yes	0	0	2	1	2		1		1						38.86	38.86	4	6.5184E-07	9144	20190821_JH_MUT_Ubi	78.108	58.601	6569200	0	2533400	0	4035800	0	0	0	0	0			256	1468	224	746;747	815;816	816		1478;1479	894	2
AMADELSEKQVYDAHTK	Oxidation (M);GlyGly (K)	2064.9422	0.94223371	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1		1		1	2	25.112	25.112	3;4	8.8618E-14	6260	20190902_JH_WT_Ubi_3	152.25	122.56	2600200000	157030000	2811900	317550000	1548700	0	66733000	0	1211500000	843090000			257	1147	225	748;749;750;751;752;753;754;755	817;818;819;820;821;822;823;824;825	824		1141	716	8
AMADELSEKQVYDAHTK	GlyGly (K)	2048.9473	0.94731909	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1	1	1	27.237	27.237	4	0.00013784	5477	20190821_JH_EV_Ubi	105.17	61.911	1121800000	125220000	61870000	0	59338000	206110000	125390000	71493000	218290000	254120000			258	1147	225	756;757;758;759;760;761;762;763	826;827;828;829;830;831;832;833	826		1141		8
AMADELSEKQVYDAHTK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2065.9262	0.92624929	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	1	1	1	1				2	2	1		1		25.067	25.067	3;4	6.0233E-06	5390	20190902_JH_EV_Ubi_2	120.32	86.215	140550000	0	0	0	42465000	44074000	6008400	0	47998000	0			259	1147	225	764;765;766;767;768;769	834;835;836;837;838;839	834	993	1141	716	5
AMADELSEKQVYDAHTK	GlyGly (K);Deamidation (NQ)	2049.9313	0.93133467	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	1	1	0	1								1		28.477	28.477	4	0.0088825	7796	20190902_JH_WT_Ubi_2	73.296	38.387	14200000	0	0	0	0	0	0	0	14200000	0			260	1147	225	770	840	840	993	1141		1
AMEMRLPVAR	Acetyl (Protein N-term);Oxidation (M)	1230.6213	0.62129768	1265	sp|Q13868-3|EXOS2_HUMAN;sp|Q13868|EXOS2_HUMAN;sp|Q13868-2|EXOS2_HUMAN	yes	no	1	0	0	1	1			1							36.031	36.031	2	0.0024224	8423	20190821_JH_WT_Ubi	101.6	13.904	1389600	0	0	1389600	0	0	0	0	0	0			261	1265	226	771	841	841			787	0
AMEPELSTLSQK	GlyGly (K)	1446.7024	0.70244436	575	sp|P15822|ZEP1_HUMAN	yes	yes	0	0	1	0	0						1				31.894	31.894	2	0.0081943	7974	20190902_JH_MUT_Ubi_2	77.533	15.842	1041200	0	0	0	0	0	1041200	0	0	0			262	575	227	772	842	842		566		1
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	261;666;995	sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN	no	no	0	0	0	2	0	1									45.695	45.695	2	8.0447E-12	12296	20190821_JH_EV_Ubi	156.81	107.35	2417800	2417800	0	0	0	0	0	0	0	0			263	261;666;995	228	773	843	843			116;117	1
AMKEENVKTVLMNPNIASVQTNEVGLK	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	3201.601	0.60096276	741	sp|P31327|CPSM_HUMAN;sp|P31327-3|CPSM_HUMAN	yes	no	0	1	2	1	2	1									43.22	43.22	4	0.018766	11365	20190821_JH_EV_Ubi	43.523	11.704	2585700	2585700	0	0	0	0	0	0	0	0			264	741	229	774	844	844	262	714;715	461	0
AMKESQQGPKGEAPK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1716.7989	0.79886394	2190	sp|Q9UPX8-4|SHAN2_HUMAN;sp|Q9UPX8|SHAN2_HUMAN;sp|Q9UPX8-3|SHAN2_HUMAN	yes	no	0	2	1	1	2			1							30.998	30.998	3	0.035582	6573	20190821_JH_WT_Ubi	41.014	9.1873	2145300	0	0	2145300	0	0	0	0	0	0			265	2190	230	775	845	845	1322;1323			0
AMKGIGTNEQAIIDVLTK	GlyGly (K)	2015.0721	0.072125671	550	sp|Q5VT79|AXA81_HUMAN;sp|P13928|ANXA8_HUMAN;sp|P13928-2|ANXA8_HUMAN	yes	no	0	0	1	0	1							1			42.151	42.151	3	0.00047105	11100	20190902_JH_MUT_Ubi_3	88.19	43.222	745520	0	0	0	0	0	0	745520	0	0			266	550	231	776	846	846		538		1
AMNYNAKDEVDGGPPCAPGGTAK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2491.0744	0.07438687	2040	sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN	yes	no	1	0	1	1	1	1	1	1	1	1	1	1	1	1	31.038	31.038	3	2.8102E-68	7240	20190902_JH_MUT_Ubi_3	208.87	175.1	55810000	6101700	4669200	4251700	6282800	7317000	8628600	7358000	5736100	5464800			267	2040	232	777;778;779;780;781;782;783;784;785	847;848;849;850;851;852;853;854;855;856	852		1934;1935	1097	10
AMNYNAKDEVDGGPPCAPGGTAK	Acetyl (Protein N-term);GlyGly (K)	2475.0795	0.079472248	2040	sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN	yes	no	1	0	1	0	1	1	1				1	1	1		33.962	33.962	3	1.1334E-56	8227	20190902_JH_MUT_Ubi_3	201.61	161.62	12269000	1864800	1937200	0	0	0	2837500	2965700	2663600	0			268	2040	232	786;787;788;789;790	857;858;859;860;861;862	861		1934;1935		6
AMNYNAKDEVDGGPPCAPGGTAKTR	Acetyl (Protein N-term);Oxidation (M);2 GlyGly (K)	2862.2661	0.26610382	2040	sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN	yes	no	1	0	2	1	2	1	1		1			1			28.347	28.347	3	6.7569E-21	6377	20190902_JH_MUT_Ubi_3	144.95	116.53	8875800	2822300	1734500	0	2607400	0	0	1711500	0	0			269	2040	233	791;792;793;794	863;864;865;866	866		1934;1935	1097	4
AMNYNAKDEVDGGPPCAPGGTAKTR	Acetyl (Protein N-term);2 GlyGly (K)	2846.2712	0.2711892	2040	sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN	yes	no	1	0	2	0	2		1								31.115	31.115	3	0.00097447	6270	20190821_JH_MUT_Ubi	63.398	46.04	746860	0	746860	0	0	0	0	0	0	0			270	2040	233	795	867	867		1934;1935		1
ANEFHDVNCEVVAVSVDSHFSHLAWINTPR	Unmodified	3449.6211	0.62112135	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	0	0	0	0			1							43.548	43.548	5	0.0055022	11416	20190821_JH_WT_Ubi	46.347	10.807	11591000	0	0	11591000	0	0	0	0	0	0			271	724	234	796	868	868				1
ANGALAIVISPSAR	Deamidation (NQ)	1339.746	0.74596415	27		yes	yes	0	1	0	0	0								1		41.012	41.012	3	0.030587	12179	20190902_JH_WT_Ubi_2	65.895	24.786	4620200	0	0	0	0	0	0	0	4620200	0	+		272	27	235	797	869	869	14			1
ANGIVVPSTIFDPSELQDLSSKK	GlyGly (K)	2558.3228	0.32279729	313	sp|O76082-3|S22A5_HUMAN;sp|O76082|S22A5_HUMAN	yes	no	0	0	1	0	1	1									47.782	47.782	3	8.4476E-06	13001	20190821_JH_EV_Ubi	89.557	48.209	2104100	2104100	0	0	0	0	0	0	0	0			273	313	236	798	870	870		294;295		1
ANGIVVPSTIFDPSELQDLSSKK	GlyGly (K);Deamidation (NQ)	2559.3068	0.30681287	313	sp|O76082-3|S22A5_HUMAN;sp|O76082|S22A5_HUMAN	yes	no	0	1	1	0	1		1	1			1				49.318	49.318	3	0.0050258	13144	20190821_JH_MUT_Ubi	60.939	33.226	9334900	0	3262100	5112600	0	0	960230	0	0	0			274	313	236	799;800;801	871;872;873	871	103	294;295		3
ANLLEIAPHLSAPLPIMLPVYK	Oxidation (M)	2415.36	0.35997484	842	sp|P43304-2|GPDM_HUMAN;sp|P43304|GPDM_HUMAN	yes	no	0	0	0	1	0	1	1							1	53.046	53.046	3	1.0682E-15	15319	20190902_JH_WT_Ubi_3	135.79	121.92	11008000	3942100	2851500	0	0	0	0	0	0	4214100			275	842	237	802;803;804	874;875;876	876			536	3
ANLLEIAPHLSAPLPIMLPVYK	Unmodified	2399.3651	0.36506021	842	sp|P43304-2|GPDM_HUMAN;sp|P43304|GPDM_HUMAN	yes	no	0	0	0	0	0			1							53.906	53.906	3	6.3426E-05	15416	20190821_JH_WT_Ubi	85.177	54.221	3990900	0	0	3990900	0	0	0	0	0	0			276	842	237	805	877	877				1
ANSFVGTAQYVSPELLTEKSACK	GlyGly (K)	2613.2745	0.27446689	190	sp|Q6A1A2|PDPK2_HUMAN;sp|O15530-4|PDPK1_HUMAN;sp|O15530-5|PDPK1_HUMAN;sp|O15530-2|PDPK1_HUMAN;sp|O15530|PDPK1_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1		1	39.267	39.267	3	1.8771E-11	10036	20190821_JH_EV_Ubi	123.58	94.102	24127000	4562400	3583000	0	2763100	2774900	2328400	4389500	0	3725500			277	190	238	806;807;808;809;810;811;812	878;879;880;881;882;883;884	878		172;173		7
ANVDISAPKVDTNAPDLSLEGPEGK	GlyGly (K)	2650.3086	0.30860379	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1				38.42	38.42	3	0.0069874	10554	20190902_JH_MUT_Ubi_2	51.39	25.854	848840	0	0	0	0	0	848840	0	0	0			278	1190	239	813	885	885		1189;1190		1
APGTNVAMASNQAVRIVK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	1958.9731	0.97313991	896	sp|P49792|RBP2_HUMAN	yes	yes	0	3	1	1	1					1					36.39	36.39	3	0.02585	9006	20190902_JH_EV_Ubi_3	41.871	10.256	1204000	0	0	0	0	1204000	0	0	0	0			279	896	240	814	886	886	310;311;934	864	566	1
APIPQKQEILVEPEPLFGAPK	GlyGly (K)	2414.3209	0.32094679	319	sp|O94888|UBXN7_HUMAN	yes	yes	0	0	1	0	1		1		1	1	1	1			41.884	41.884	3	2.0571E-08	10897	20190902_JH_MUT_Ubi_3	116.09	83.998	10773000	0	2444100	0	1093300	587140	3448300	3200400	0	0			280	319	241	815;816;817;818;819	887;888;889;890;891	891		297		5
APLATGEDDDDEVPDLVENFDEASK	Unmodified	2690.1719	0.17189511	628	sp|P20290-2|BTF3_HUMAN;sp|P20290|BTF3_HUMAN	yes	no	0	0	0	0	0			1					1	1	48.613	48.613	3	0.0021715	13437	20190821_JH_WT_Ubi	59.943	25.934	5138700	0	0	1741200	0	0	0	0	1500000	1897600			281	628	242	820;821;822	892;893;894	892				3
APNTPASGANGDGSMSQTQSGSTVK	Oxidation (M)	2365.0452	0.045195231	10	CON__P15636	yes	yes	0	0	0	1	0						1				20.819	20.819	3	3.1924E-15	4602	20190902_JH_MUT_Ubi_2	123.54	61.106	2234800	0	0	0	0	0	2234800	0	0	0		+	282	10	243	823	895	895			18	1
APNTPASGANGDGSMSQTQSGSTVK	Oxidation (M);Deamidation (NQ)	2366.0292	0.029210816	10	CON__P15636	yes	yes	0	1	0	1	0			1					1	1	22.216	22.216	3	2.7913E-43	4159	20190821_JH_WT_Ubi	177.69	142.55	13431000	0	0	3907900	0	0	0	0	8380600	1143000		+	283	10	243	824;825;826	896;897;898;899	897	8;721		18	4
APNTPASGANGDGSMSQTQSGSTVK	Oxidation (M);2 Deamidation (NQ)	2367.0132	0.013226401	10	CON__P15636	yes	yes	0	2	0	1	0								1		23.241	23.241	3	0.00013167	6030	20190902_JH_WT_Ubi_2	78.451	47.582	1072300	0	0	0	0	0	0	0	1072300	0		+	284	10	243	827	900;901	900	8;721		18	2
APPSVFAEVPQAQPVLVFK	Unmodified	2023.1142	0.11424848	598	sp|P17174|AATC_HUMAN	yes	yes	0	0	0	0	0						1				49.532	49.532	2	0.010126	14241	20190902_JH_MUT_Ubi_2	70.628	38.561	298430	0	0	0	0	0	298430	0	0	0			285	598	244	828	902	902				0
APVQPQQSPAAAPGGTDEKPSGK	GlyGly (K)	2331.1455	0.14550162	1224	sp|Q13200|PSMD2_HUMAN	yes	yes	0	0	1	0	1	1	1			1		1			23.268	23.268	3	8.2426E-09	3774	20190821_JH_MUT_Ubi	115.36	83.847	5934200	1279200	1325500	0	0	1187900	0	2141600	0	0			286	1224	245	829;830;831;832	903;904;905;906	905		1289		4
AQAAAPASVPAQAPK	Unmodified	1376.7412	0.74121312	867	sp|P47914|RL29_HUMAN	yes	yes	0	0	0	0	0									1	25.46	25.46	2	0.0041871	6582	20190902_JH_WT_Ubi_3	92.19	39.023	7054700	0	0	0	0	0	0	0	0	7054700			287	867	246	833	907	907				0
AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR	2 Oxidation (M)	3711.8672	0.86724163	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	2	0	1	1				1			1	50.024	50.024	3	1.2105E-05	13618	20190821_JH_EV_Ubi	63.328	43.259	2589700	471810	706610	0	0	0	698990	0	0	712270			288	690	247	834;835;836;837	908;909;910;911;912;913	908			427;428	6
AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR	2 Oxidation (M);Deamidation (NQ)	3712.8513	0.85125722	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	1	0	2	0							1			49.708	49.708	3	3.5581E-08	13055	20190902_JH_MUT_Ubi_3	77.627	49.446	445030	0	0	0	0	0	0	445030	0	0			289	690	247	838	914;915	915	244		427;428	2
AQAMQQKIIDK	2 Deamidation (NQ)	1274.654	0.6540376	80	sp|A4FU69-5|EFCB5_HUMAN;sp|A4FU69-2|EFCB5_HUMAN;sp|A4FU69-4|EFCB5_HUMAN;sp|A4FU69-3|EFCB5_HUMAN;sp|A4FU69|EFCB5_HUMAN	yes	no	0	2	0	0	1									1	38.12	38.12	2	0.034653	10845	20190902_JH_WT_Ubi_3	54.608	6.7013	2357600	0	0	0	0	0	0	0	0	2357600			290	80	248	839	916	916	741;742			1
AQDEGLLSDVVPFK	Unmodified	1516.7773	0.77732386	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	0	0									1	47.509	47.509	2	0.016705	13944	20190902_JH_WT_Ubi_3	68.536	17.731	1803200	0	0	0	0	0	0	0	0	1803200			291	975	249	840	917	917				0
AQDGAAMEMQPLKSEEGGDGDEK	2 Oxidation (M);GlyGly (K)	2538.0486	0.048625629	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN	yes	no	0	0	1	2	1	1	2	1	1	2	1	1	1	1	22.662	22.662	3	3.7512E-37	4752	20190902_JH_MUT_Ubi_3	176.88	148.13	111870000	2852600	3738000	12109000	21825000	22575000	11478000	9497300	14590000	13206000			292	624	250	841;842;843;844;845;846;847;848;849;850;851	918;919;920;921;922;923;924;925;926;927;928	925		599	382;383	11
AQDGAAMEMQPLKSEEGGDGDEK	Oxidation (M);GlyGly (K)	2522.0537	0.053711007	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN	yes	no	0	0	1	1	1	2	1	1	1	1	1	2	1	1	25.827	25.827	3	1.5537E-87	6654	20190902_JH_WT_Ubi_3	221.51	187.68	20288000	3301600	1376900	2990600	1339200	1191000	2488800	4184500	3415500	0			293	624	250	852;853;854;855;856;857;858;859;860;861;862	929;930;931;932;933;934;935;936;937;938;939	939		599	382;383	11
AQDGAAMEMQPLKSEEGGDGDEK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2539.0326	0.032641214	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN	yes	no	0	1	1	2	1				1				1		23.224	23.224	3	4.3698E-07	6111	20190902_JH_WT_Ubi_2	101.53	73.5	3911100	0	0	0	1862500	0	0	0	2048700	0			294	624	250	863;864	940;941	941	872	599	382;383	2
AQDGAAMEMQPLKSEEGGDGDEK	GlyGly (K)	2506.0588	0.058796385	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN	yes	no	0	0	1	0	1		1	1				1	1	1	30.014	30.014	3	3.5405E-09	6310	20190821_JH_WT_Ubi	119.83	97.604	12080000	0	1837300	2356000	0	0	0	0	3879100	4007300			295	624	250	865;866;867;868;869	942;943;944;945;946	944		599		5
AQFVPLPVSVSVEFAVAATDCIAK	Unmodified	2518.3141	0.31414686	9	CON__P12763	yes	yes	0	0	0	0	0		1								56.585	56.585	3	6.0303E-05	15016	20190821_JH_MUT_Ubi	83.602	54.476	1743000	0	1743000	0	0	0	0	0	0	0		+	296	9	251	870	947	947				1
AQHLSPAPGLAQPAAPAQASAAIPAAGK	Unmodified	2561.3714	0.37141923	1885	sp|Q9BW04|SARG_HUMAN;sp|Q9BW04-2|SARG_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	34.257	34.257	3	8.6693E-26	8230	20190902_JH_EV_Ubi_3	142.25	112.16	44306000	7640200	1778800	5960600	6770300	7450300	1685100	1947600	5259900	5813600			297	1885	252	871;872;873;874;875;876;877;878;879	948;949;950;951;952;953;954;955;956	950				9
AQHLSPAPGLAQPAAPAQASAAIPAAGK	Deamidation (NQ)	2562.3554	0.35543482	1885	sp|Q9BW04|SARG_HUMAN;sp|Q9BW04-2|SARG_HUMAN	yes	no	0	1	0	0	0				1	1					34.906	34.906	3	0.0019592	8530	20190902_JH_EV_Ubi_2	68.895	34.419	1713000	0	0	0	1016600	696360	0	0	0	0			298	1885	252	880;881	957;958	957	1220			2
AQISSNSGFKECPSSHPEPTR	Acetyl (Protein N-term);GlyGly (K)	2471.1135	0.11354957	128	sp|O00443-2|P3C2A_HUMAN;sp|O00443|P3C2A_HUMAN	yes	no	1	0	1	0	1		1				1				28.008	28.008	3	0.00027097	6539	20190902_JH_MUT_Ubi_2	78.552	49.916	3124000	0	1274600	0	0	0	1849400	0	0	0			299	128	253	882;883	959;960	960		116		2
AQLEQGEPVLETPVESQQHEIESRILDLR	3 Deamidation (NQ)	3345.6576	0.65760924	938	sp|P52630-4|STAT2_HUMAN;sp|P52630|STAT2_HUMAN	yes	no	0	3	0	0	1		1								39.509	39.509	4	0.022005	9263	20190821_JH_MUT_Ubi	40.142	8.3228	676920	0	676920	0	0	0	0	0	0	0			300	938	254	884	961	961	943;944;945			0
AQLLLDQEAESASQK	GlyGly (K);2 Deamidation (NQ)	1745.8319	0.8319382	1416	sp|Q52LW3|RHG29_HUMAN	yes	yes	0	2	1	0	0									1	50.265	50.265	2	0.030333	14709	20190902_JH_WT_Ubi_3	46.706	7.8314	556880	0	0	0	0	0	0	0	0	556880			301	1416	255	885	962	962	1065;1066	1438		0
AQLNIGNVLPVGTMPEGTIVCCLEEK	Unmodified	2841.4075	0.40747167	1071	sp|P62917|RL8_HUMAN	yes	yes	0	0	0	0	0			1							53.04	53.04	3	3.5303E-07	15026	20190821_JH_WT_Ubi	95.742	69.915	3844800	0	0	3844800	0	0	0	0	0	0			302	1071	256	886	963	963				1
AQLNIGNVLPVGTMPEGTIVCCLEEK	Oxidation (M)	2857.4024	0.40238629	1071	sp|P62917|RL8_HUMAN	yes	yes	0	0	0	1	0								1	1	50.581	50.581	3	7.1934E-05	14746	20190902_JH_WT_Ubi_3	81.312	49.395	3207000	0	0	0	0	0	0	0	1425500	1781600			303	1071	256	887;888	964;965	965			655	2
AQQDQLQVKNNIK	2 GlyGly (K);Deamidation (NQ)	1754.8911	0.89112484	94	sp|A8K979-2|ERI2_HUMAN;sp|A8K979|ERI2_HUMAN	yes	no	0	1	2	0	1						1				34.154	34.154	3	0.020635	8939	20190902_JH_MUT_Ubi_2	66.267	23.747	0	0	0	0	0	0	0	0	0	0			304	94	257	889	966	966	749	82;83		1
AQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFK	Oxidation (M);GlyGly (K)	3672.7438	0.74381526	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	0	1	1	1	1		1		1	1				39.675	39.675	3	2.5898E-07	9904	20190902_JH_EV_Ubi_3	80.116	60.047	5455400	2097100	0	1967000	0	485480	905870	0	0	0			305	173	258	890;891;892;893	967;968;969;970;971	968		144;145	72	5
AQTEGINISEEALNHLGEIGTK	Unmodified	2323.1656	0.16556836	2201	sp|Q9Y265|RUVB1_HUMAN	yes	yes	0	0	0	0	0			1							42.002	42.002	3	0.01764	10791	20190821_JH_WT_Ubi	46.099	14.452	6229500	0	0	6229500	0	0	0	0	0	0			306	2201	259	894	972	972				1
AQTLPTSVVTITSESSPGKR	GlyGly (K)	2172.1386	0.13862533	1129	sp|Q01082|SPTB2_HUMAN	yes	yes	0	0	1	0	1	1	1								34.173	34.173	3	0.0045454	7416	20190821_JH_MUT_Ubi	66.893	31.716	5730100	3264100	2466000	0	0	0	0	0	0	0			307	1129	260	895;896	973;974	974		1120		2
ASAAPGKNASGEDEVLLGAR	GlyGly (K)	2026.0079	0.0079455095	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN;sp|O15438-5|MRP3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	28.784	28.784	3	5.301E-49	5517	20190821_JH_MUT_Ubi	199.91	146.87	451950000	70319000	37688000	22870000	63988000	53697000	95698000	44692000	34021000	28979000			308	186	261	897;898;899;900;901;902;903;904;905	975;976;977;978;979;980;981;982;983	978		160		9
ASAAPGKNASGEDEVLLGAR	GlyGly (K);Deamidation (NQ)	2026.992	0.99196109	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN;sp|O15438-5|MRP3_HUMAN	yes	no	0	1	1	0	1						1				30.004	30.004	3	0.0071282	7360	20190902_JH_MUT_Ubi_2	85.046	47.869	1739600	0	0	0	0	0	1739600	0	0	0			309	186	261	906	984	984	68	160		1
ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK	Unmodified	3331.4389	0.43890227	1287	sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN	yes	no	0	0	0	0	0	1							1	1	41.065	41.065	3	3.6575E-27	11771	20190902_JH_WT_Ubi_3	144.08	126.98	7663300	678170	0	0	0	0	0	0	3793100	3192000			310	1287	262	907;908;909	985;986;987	987				3
ASAPAAAAAAAAAAAAAAAALAAAAGGGR	Unmodified	2205.1614	0.16142646	241	sp|O60346|PHLP1_HUMAN	yes	yes	0	0	0	0	0	1									56.849	56.849	3	8.0178E-17	14870	20190821_JH_EV_Ubi	121.56	97.997	987190	987190	0	0	0	0	0	0	0	0			311	241	263	910	988;989	988				2
ASASGSGAQVGGPISSGSSASSVTVTR	Unmodified	2364.1517	0.15170921	390	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1			1	30.756	30.756	3	1.623E-53	6795	20190821_JH_EV_Ubi	183.65	143.67	86901000	15649000	5005300	21328000	0	10196000	8824200	0	0	25898000			312	390	264	911;912;913;914;915;916	990;991;992;993;994;995	990				6
ASASTQPAALSAEQAK	Acetyl (Protein N-term)	1571.7791	0.77911477	1839	sp|Q99622|C10_HUMAN	yes	yes	1	0	0	0	0								1		33.288	33.288	2	0.00012157	9535	20190902_JH_WT_Ubi_2	102.87	46.468	1916900	0	0	0	0	0	0	0	1916900	0			313	1839	265	917	996	996				1
ASEAKEGEEAGPGDPLLEAVPK	GlyGly (K)	2307.123	0.12303485	1375	sp|Q16543|CDC37_HUMAN	yes	yes	0	0	1	0	1				1		1				35.455	35.455	3	0.00011131	9463	20190902_JH_MUT_Ubi_2	84.581	53.625	1673300	0	0	0	584060	0	1089200	0	0	0			314	1375	266	918;919	997;998	998		1416		2
ASEGLKSINPGETAPSMR	Oxidation (M);GlyGly (K)	1973.9477	0.94765344	1699	sp|Q8WW43-2|APH1B_HUMAN;sp|Q8WW43|APH1B_HUMAN	yes	no	0	0	1	1	1								1		26.782	26.782	3	0.002142	7234	20190902_JH_WT_Ubi_2	76.051	43.126	2282900	0	0	0	0	0	0	0	2282900	0			315	1699	267	920	999	999		1692	971	1
ASFVTEVLAHSGR	Acetyl (Protein N-term)	1414.7205	0.72047768	198	sp|O43264-2|ZW10_HUMAN;sp|O43264|ZW10_HUMAN	yes	no	1	0	0	0	0		1								50.959	50.959	2	0.022103	13501	20190821_JH_MUT_Ubi	63.408	30.516	0	0	0	0	0	0	0	0	0	0			316	198	268	921	1000	1000				1
ASGADSKGDDLSTAILK	Acetyl (Protein N-term);GlyGly (K)	1803.885	0.88503641	974	sp|P55072|TERA_HUMAN	yes	yes	1	0	1	0	1	1	1	1		1	1			1	37.647	37.647	3	7.1791E-66	9262	20190902_JH_EV_Ubi_3	226.74	115.9	241530000	28742000	20474000	61346000	0	22107000	34952000	0	0	73908000			317	974	269	922;923;924;925;926;927	1001;1002;1003;1004;1005;1006	1002		956;957		6
ASGADSKGDDLSTAILKQK	Acetyl (Protein N-term);2 GlyGly (K)	2174.0815	0.081504383	974	sp|P55072|TERA_HUMAN	yes	yes	1	0	2	0	2			1					1	1	33.103	33.103	3	1.6773E-30	9540	20190902_JH_WT_Ubi_2	171.71	116.94	18311000	0	0	6320500	0	0	0	0	6233800	5757200			318	974	270	928;929;930	1007;1008;1009	1008		956;957		3
ASGPGLNTTGVPASLPVEFTIDAK	Unmodified	2341.2165	0.2165413	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1			1				1	1	49.136	49.136	3	5.6585E-08	14817	20190902_JH_WT_Ubi_2	103.24	58.159	6208100	955130	0	0	583660	0	0	0	2446000	2223300			319	637	271	931;932;933;934	1010;1011;1012;1013	1012				4
ASGPPVSELITKAVAASK	GlyGly (K)	1839.0102	0.010177341	588;508;587	sp|P16403|H12_HUMAN;sp|P10412|H14_HUMAN;sp|P16402|H13_HUMAN	no	no	0	0	1	0	1		1	1			1	1	1	1	41.229	41.229	3	0.00015276	10450	20190821_JH_WT_Ubi	99.392	73.427	44088000	0	3816100	13492000	0	0	5367400	4288100	8018900	9105800			320	588;508;587	272	935;936;937;938;939;940	1014;1015;1016;1017;1018;1019	1017		500		6
ASGVQKHSNSSSGSLTNTPER	GlyGly (K)	2257.0683	0.068313935	1436	sp|Q5SR56|MF14B_HUMAN	yes	yes	0	0	1	0	1						1				17.543	17.543	3	5.1948E-12	3911	20190902_JH_MUT_Ubi_2	133.98	98.34	467500	0	0	0	0	0	467500	0	0	0			321	1436	273	941	1020	1020		1455		1
ASGVQVADEVCR	Acetyl (Protein N-term)	1331.614	0.6139637	1006	sp|P60981|DEST_HUMAN	yes	yes	1	0	0	0	0					1					36.868	36.868	2	0.032889	9125	20190902_JH_EV_Ubi_3	69.261	40.863	3726600	0	0	0	0	3726600	0	0	0	0			322	1006	274	942	1021	1021				0
ASIAGHMFDVVVIGGGISGLSAAK	Oxidation (M)	2272.1886	0.18855241	638	sp|P21397|AOFA_HUMAN	yes	yes	0	0	0	1	0		1	1							44.428	44.428	3	1.0013E-07	11258	20190821_JH_MUT_Ubi	99.603	59.417	26627000	0	4318200	22309000	0	0	0	0	0	0			323	638	275	943;944	1022;1023	1022			391	2
ASIAGHMFDVVVIGGGISGLSAAK	Unmodified	2256.1936	0.19363779	638	sp|P21397|AOFA_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	48.157	48.157	3	3.1983E-30	13331	20190821_JH_WT_Ubi	159.47	106.14	39545000	0	5617900	22863000	0	0	1827900	1206900	2329400	5699400			324	638	275	945;946;947;948;949;950	1024;1025;1026;1027;1028;1029	1027				6
ASKGAGMSFSRK	Oxidation (M);2 GlyGly (K)	1469.7045	0.70451004	1456	sp|Q5XPI4|RN123_HUMAN;sp|Q5XPI4-2|RN123_HUMAN	yes	no	0	0	2	1	2						1				20.659	20.659	3	0.029664	4549	20190902_JH_MUT_Ubi_2	76.165	25.373	0	0	0	0	0	0	0	0	0	0			325	1456	276	951	1030	1030		1469;1470	888	1
ASLGSLEGEAEAEASSPKGK	GlyGly (K)	2030.9756	0.97564233	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								32.015	32.015	3	2.4322E-05	6548	20190821_JH_MUT_Ubi	104.78	66.084	838030	0	838030	0	0	0	0	0	0	0			326	1190	277	952	1031	1031		1191		1
ASLSLAPVNIFKAGADEER	Acetyl (Protein N-term);GlyGly (K)	2143.0909	0.090946857	1105	sp|P78371|TCPB_HUMAN	yes	yes	1	0	1	0	1						1	1		1	50.723	50.723	3	0.0013383	14486	20190902_JH_MUT_Ubi_2	73.597	44.106	3583100	0	0	0	0	0	1156000	1584900	0	842310			327	1105	278	953;954;955	1032;1033;1034	1032		1101		3
ASMKGLGTDEDSLIEIICSR	Oxidation (M);GlyGly (K)	2324.0988	0.098810706	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	1	1		1	1	1	1	1		1	1	43.536	43.536	3	3.1601E-39	11448	20190821_JH_WT_Ubi	184.83	128.49	46497000	0	3702200	15462000	2650900	2406400	4331600	0	9349600	8594200			328	446	279	956;957;958;959;960;961;962	1035;1036;1037;1038;1039;1040;1041	1039		436	248	7
ASMKGLGTDEDSLIEIICSR	GlyGly (K)	2308.1039	0.10389608	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1		1	1			1		1	1	45.684	45.684	3	4.0801E-05	12284	20190821_JH_WT_Ubi	100.01	53.757	21347000	0	2688900	9919500	0	0	2098000	0	4004000	2636400			329	446	279	963;964;965;966;967	1042;1043;1044;1045;1046	1044		436		5
ASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVK	Unmodified	3725.988	0.98799192	1175	sp|Q07666-3|KHDR1_HUMAN;sp|Q07666|KHDR1_HUMAN	yes	no	0	0	0	0	0		1	1	1	1		1	1	1	49.635	49.635	3	6.0818E-05	13951	20190821_JH_WT_Ubi	51.958	37.365	13801000	0	704330	4219700	907980	1291800	0	734860	2528300	3414300			330	1175	280	968;969;970;971;972;973;974	1047;1048;1049;1050;1051;1052;1053;1054;1055;1056;1057	1053				11
ASPVVLQGLGGTFR	Unmodified	1400.7776	0.77759863	63		yes	yes	0	0	0	0	0	1						1			32.123	32.123	3	0.012834	7581	20190902_JH_MUT_Ubi_3	65.295	27.682	6704600	3609400	0	0	0	0	0	3095200	0	0	+		331	63	281	975;976	1058;1059	1059				2
ASSHSSQTQGGGSVTKK	GlyGly (K)	1759.8449	0.84490293	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1		1								2.6577	2.6577	3	0.0018313	435	20190821_JH_MUT_Ubi	83.964	51.812	260380	0	260380	0	0	0	0	0	0	0			332	390;391	282	977	1060	1060		355		1
ASSTVPVSAAGSANETPEIPDNVGDWLR	Acetyl (Protein N-term)	2881.373	0.37299496	1759	sp|Q96B49|TOM6_HUMAN	yes	yes	1	0	0	0	0			1							54.735	54.735	3	5.6837E-11	15712	20190821_JH_WT_Ubi	104.57	62.399	2613400	0	0	2613400	0	0	0	0	0	0			333	1759	283	978	1061	1061				1
ASTDVAGQAVTINLVPTEEQAK	GlyGly (K);3 Deamidation (NQ)	2358.1438	0.14382987	1964	sp|Q9H792|PEAK1_HUMAN	yes	yes	0	3	1	0	0				1						38.409	38.409	3	0.025682	9482	20190902_JH_EV_Ubi_2	42.711	11.738	4900300	0	0	0	4900300	0	0	0	0	0			334	1964	284	979	1062	1062	622;1251;1252	1894		1
ASVLDTSMSAGSGSPSKTVTPK	Oxidation (M);GlyGly (K)	2237.0845	0.08454085	2187	sp|Q9UPQ0-9|LIMC1_HUMAN;sp|Q9UPQ0-8|LIMC1_HUMAN;sp|Q9UPQ0-6|LIMC1_HUMAN;sp|Q9UPQ0-5|LIMC1_HUMAN;sp|Q9UPQ0-10|LIMC1_HUMAN;sp|Q9UPQ0-2|LIMC1_HUMAN;sp|Q9UPQ0-4|LIMC1_HUMAN;sp|Q9UPQ0|LIMC1_HUMAN;sp|Q9UPQ0-3|LIMC1_HUMAN	yes	no	0	0	1	1	1							1			26.062	26.062	3	0.02452	5790	20190902_JH_MUT_Ubi_3	48.371	7.0234	672790	0	0	0	0	0	0	672790	0	0			335	2187	285	980	1063	1063		2047	1136	1
ASVSELACIYSALILHDDEVTVTEDK	Acetyl (Protein N-term)	2919.4059	0.40593457	426	sp|P05386|RLA1_HUMAN	yes	yes	1	0	0	0	0			1							57.756	57.756	3	0.00018574	16343	20190821_JH_WT_Ubi	72.864	34.194	2005500	0	0	2005500	0	0	0	0	0	0			336	426	286	981	1064	1064				1
ASYIHLQGSDLRPQFHQFTAVPHPNVK	Unmodified	3086.5839	0.58387163	945	sp|P53041|PPP5_HUMAN	yes	yes	0	0	0	0	1			1							35.333	35.333	5	0.013664	8135	20190821_JH_WT_Ubi	39.215	16.646	13708000	0	0	13708000	0	0	0	0	0	0			337	945	287	982	1065	1065				1
ATAAGVKQTESTSFLEK	GlyGly (K)	1880.948	0.94797101	1003	sp|P60900-3|PSA6_HUMAN;sp|P60900-2|PSA6_HUMAN;sp|P60900|PSA6_HUMAN	yes	no	0	0	1	0	1		1								27.867	27.867	3	0.026434	5070	20190821_JH_MUT_Ubi	50.874	11.927	978720	0	978720	0	0	0	0	0	0	0			338	1003	288	983	1066	1066		992		1
ATAAPAGAPPQPQDLEFTK	Unmodified	1908.9581	0.95814177	655	sp|P22695|QCR2_HUMAN	yes	yes	0	0	0	0	0									1	36.451	36.451	2	0.011488	10273	20190902_JH_WT_Ubi_3	69.258	38.43	6357100	0	0	0	0	0	0	0	0	6357100			339	655	289	984	1067	1067				0
ATAAVIFLHGLGDTGHGWAEAFAGIR	Unmodified	2637.3452	0.34520448	296	sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN	yes	no	0	0	0	0	0		1	1					1		49.374	49.374	3;4	0.00061648	13701	20190821_JH_WT_Ubi	64.619	47.473	22555000	0	1727800	14880000	0	0	0	0	5946300	0			340	296	290	985;986;987	1068;1069;1070	1069				3
ATAENEFVVLK	Unmodified	1219.6449	0.64485312	14	sp|P78386|KRT85_HUMAN;CON__P78386	yes	no	0	0	0	0	0							1			35.344	35.344	2	0.0086909	8974	20190902_JH_MUT_Ubi_3	89.029	9.5398	68746000	0	0	0	0	0	0	68746000	0	0		+	341	14	291	988	1071	1071				0
ATAGDTHLGGEDFDNR	Unmodified	1674.7234	0.72339081	503;766;596	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN;sp|P34931|HS71L_HUMAN;sp|P48741|HSP77_HUMAN;sp|P17066|HSP76_HUMAN	no	no	0	0	0	0	0									1	25.851	25.851	3	0.0084728	6737	20190902_JH_WT_Ubi_3	64.244	38.526	4486000	0	0	0	0	0	0	0	0	4486000			342	503;766;596	292	989	1072	1072				1
ATANGAVENGQPDR	Acetyl (Protein N-term);2 Deamidation (NQ)	1442.6274	0.62736516	865	sp|P47895|AL1A3_HUMAN	yes	yes	1	2	0	0	0								1		29.405	29.405	2	4.8398E-19	8078	20190902_JH_WT_Ubi_2	173.06	119.73	7359900	0	0	0	0	0	0	0	7359900	0			343	865	293	990	1073	1073	305;306			1
ATCAPQHGAPGPGPADASK	Unmodified	1788.8213	0.82133071	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0								1	1	19.831	19.831	3	6.2445E-05	4970	20190902_JH_WT_Ubi_2	99.273	70.976	33923000	0	0	0	0	0	0	0	14062000	19861000			344	637	294	991;992	1074;1075	1074				2
ATCIGNNSAAAVSMLKQDYK	Oxidation (M);GlyGly (K)	2271.0624	0.06236562	684	sp|P25789|PSA4_HUMAN;sp|P25789-2|PSA4_HUMAN	yes	no	0	0	1	1	1		1								32.636	32.636	3	7.4971E-05	6833	20190821_JH_MUT_Ubi	97.352	55.823	3614900	0	3614900	0	0	0	0	0	0	0			345	684	295	993	1076	1076		669	423	1
ATCIGNNSAAAVSMLKQDYK	GlyGly (K)	2255.0675	0.067450998	684	sp|P25789|PSA4_HUMAN;sp|P25789-2|PSA4_HUMAN	yes	no	0	0	1	0	1		1				1				34.934	34.934	3	0.0035958	9166	20190902_JH_MUT_Ubi_2	67.252	37.978	5835000	0	2656300	0	0	0	3178700	0	0	0			346	684	295	994;995	1077;1078	1078		669		2
ATDLKNLFSK	GlyGly (K);Deamidation (NQ)	1250.6507	0.65066678	1279;1348	sp|Q14151|SAFB2_HUMAN;sp|Q15424-2|SAFB1_HUMAN;sp|Q15424|SAFB1_HUMAN;sp|Q15424-4|SAFB1_HUMAN;sp|Q15424-3|SAFB1_HUMAN	no	no	0	1	1	0	1					1					23.157	23.157	2	0.032919	4864	20190902_JH_EV_Ubi_3	67.897	23.472	2703600	0	0	0	0	2703600	0	0	0	0			347	1279;1348	296	996	1079	1079	412			0
ATDLRPIYISVQPPSLHVLEQR	Unmodified	2531.386	0.38600667	1386	sp|Q16774|KGUA_HUMAN;sp|Q16774-2|KGUA_HUMAN;sp|Q16774-3|KGUA_HUMAN	yes	no	0	0	0	0	1		1	1			1				42.96	42.96	4	0.0048337	11244	20190821_JH_WT_Ubi	61.276	36.07	12100000	0	3089700	7637000	0	0	1373700	0	0	0			348	1386	297	997;998;999	1080;1081;1082	1082				3
ATEMVEVGADDDEGGAER	Oxidation (M)	1865.7585	0.75851526	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN;sp|Q6NZI2-3|CAVN1_HUMAN	yes	no	0	0	0	1	0			1							26.471	26.471	2	0.0065103	5269	20190821_JH_WT_Ubi	76.311	33.502	5120000	0	0	5120000	0	0	0	0	0	0			349	1476	298	1000	1083	1083			902	1
ATESGAQSAPLPMEGVDISPKQDEGVLK	Oxidation (M);GlyGly (K)	2983.4444	0.44444534	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	35.987	35.987	3	2.4141E-85	8235	20190821_JH_MUT_Ubi	213.2	159.92	113320000	22299000	7541300	8788500	11360000	9162000	15081000	17436000	11389000	10261000			350	1142	299	1001;1002;1003;1004;1005;1006;1007;1008;1009	1084;1085;1086;1087;1088;1089;1090;1091;1092	1087		1137;1138	713	9
ATESGAQSAPLPMEGVDISPKQDEGVLK	GlyGly (K)	2967.4495	0.44953072	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			39.402	39.402	3	1.7158E-31	10071	20190821_JH_EV_Ubi	147.28	115.2	28911000	4648100	6046100	6948000	1752900	1216500	2599600	5699500	0	0			351	1142	299	1010;1011;1012;1013;1014;1015;1016	1093;1094;1095;1096;1097;1098;1099;1100	1093		1137;1138		8
ATESGAQSAPLPMEGVDISPKQDEGVLK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2984.4285	0.42846093	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	1	1	1	1					1	1				36.345	36.345	3	6.6331E-15	8983	20190902_JH_EV_Ubi_3	111.56	80.293	1013900	0	0	0	0	1013900	0	0	0	0			352	1142	299	1017;1018	1101;1102	1101	989	1137;1138	713	2
ATGEADVEFVTHEDAVAAMSK	Oxidation (M)	2192.9896	0.98957783	747	sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN;sp|P31942-6|HNRH3_HUMAN;sp|P31942-5|HNRH3_HUMAN	yes	no	0	0	0	1	0								1		33.711	33.711	3	0.023338	9686	20190902_JH_WT_Ubi_2	46.461	22.35	2096000	0	0	0	0	0	0	0	2096000	0			353	747	300	1019	1103	1103			465	1
ATGQVCHALCSPEGCWGPEPR	Unmodified	2368.0147	0.014703921	382	sp|P00533|EGFR_HUMAN;sp|P00533-4|EGFR_HUMAN;sp|P00533-3|EGFR_HUMAN	yes	no	0	0	0	0	0			1							32.4	32.4	3	7.3679E-07	7060	20190821_JH_WT_Ubi	104.38	71.637	11074000	0	0	11074000	0	0	0	0	0	0			354	382	301	1020	1104	1104				1
ATNPLNKELDWASINGFCEQLNEDFEGPPLATR	GlyGly (K);Deamidation (NQ)	3860.7952	0.79518213	2147	sp|Q9UJY5-5|GGA1_HUMAN;sp|Q9UJY5-4|GGA1_HUMAN;sp|Q9UJY5-2|GGA1_HUMAN;sp|Q9UJY5|GGA1_HUMAN;sp|Q9UJY5-6|GGA1_HUMAN	yes	no	0	1	1	0	1		1								52.062	52.062	3	1.2314E-11	13774	20190821_JH_MUT_Ubi	107.98	82.907	1193700	0	1193700	0	0	0	0	0	0	0			355	2147	302	1021	1105	1105	684	2013		1
ATPLSSTVTLSMSADVPLVVEYK	Oxidation (M)	2423.2505	0.25054355	530	sp|P12004|PCNA_HUMAN	yes	yes	0	0	0	1	0		1								48.395	48.395	3	0.018357	12659	20190821_JH_MUT_Ubi	46.578	19.054	1542700	0	1542700	0	0	0	0	0	0	0			356	530	303	1022	1106	1106			317	1
ATQFTGATGAIMTTETTKTAR	Oxidation (M);GlyGly (K)	2287.1114	0.1114243	1276	sp|Q14126|DSG2_HUMAN	yes	yes	0	0	1	1	1	1	1		1	1	1	1	1	1	28.357	28.357	3	7.1808E-06	5353	20190821_JH_MUT_Ubi	96.391	72.349	29490000	3474900	2792800	0	3546300	7304800	3959800	3418900	3420500	1572000			357	1276	304	1023;1024;1025;1026;1027;1028;1029;1030	1107;1108;1109;1110;1111;1112;1113;1114	1110		1340	792	8
ATQFTGATGAIMTTETTKTAR	GlyGly (K)	2271.1165	0.11650968	1276	sp|Q14126|DSG2_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1			31.478	31.478	3	1.6949E-05	6496	20190821_JH_MUT_Ubi	88.471	59.087	12913000	2836700	4869600	0	976520	0	0	4229900	0	0			358	1276	304	1031;1032;1033;1034;1035	1115;1116;1117;1118;1119	1117		1340		5
ATQVEPLLPGGATLLQAEEHGGLVR	Acetyl (Protein N-term)	2597.3813	0.38131522	1488	sp|Q6PKG0|LARP1_HUMAN	yes	yes	1	0	0	0	0								1		52.612	52.612	3	0.011259	15669	20190902_JH_WT_Ubi_2	52.03	9.7211	1032500	0	0	0	0	0	0	0	1032500	0			359	1488	305	1036	1120	1120				0
ATSMATMNCLNDCFHILQLQHASHQK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	3187.3944	0.39435758	1895	sp|Q9BXB4|OSB11_HUMAN	yes	yes	0	2	1	1	0						1				56.833	56.833	3	0.031063	15406	20190902_JH_MUT_Ubi_2	44.5	13.991	0	0	0	0	0	0	0	0	0	0			360	1895	306	1037	1121	1121	600;601;1228		1039	1
ATSTTELPPEYLTSPLSQQSQLPPKR	GlyGly (K)	2982.5298	0.52982995	163	sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN	yes	no	0	0	1	0	1		1		1			1		1	39.642	39.642	3	0.00044091	11276	20190902_JH_WT_Ubi_3	72.927	44.422	21075000	0	6949000	0	5828600	0	0	5768100	0	2529500			361	163	307	1038;1039;1040;1041	1122;1123;1124;1125	1125		138		4
ATTAALLLEAQAATGFLVDPVR	Unmodified	2227.2212	0.22123275	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1		1	55.359	55.359	3	1.3138E-22	15892	20190821_JH_WT_Ubi	156.58	106.19	26302000	1471400	3987300	14459000	0	0	1828700	1021800	0	3533700			362	1332	308	1042;1043;1044;1045;1046;1047	1126;1127;1128;1129;1130;1131	1130				6
ATTLSNAVSSLASTGLSLTK	Unmodified	1921.0368	0.036786022	1245	sp|Q13492-4|PICAL_HUMAN;sp|Q13492-3|PICAL_HUMAN;sp|Q13492-2|PICAL_HUMAN;sp|Q13492-5|PICAL_HUMAN;sp|Q13492|PICAL_HUMAN	yes	no	0	0	0	0	0		1					1			48.535	48.535	2	3.264E-32	12789	20190821_JH_MUT_Ubi	178.85	129.4	1920300	0	1342200	0	0	0	0	578070	0	0			363	1245	309	1048;1049	1132;1133	1132				1
ATTLSNAVSSLASTGLSLTKVDER	GlyGly (K)	2534.3188	0.31877454	1245	sp|Q13492-4|PICAL_HUMAN;sp|Q13492-3|PICAL_HUMAN;sp|Q13492-2|PICAL_HUMAN;sp|Q13492-5|PICAL_HUMAN;sp|Q13492|PICAL_HUMAN	yes	no	0	0	1	0	1				1	1	1	1	1	1	46.526	46.526	3	2.1431E-08	13505	20190902_JH_MUT_Ubi_2	109.23	82.26	12447000	0	0	0	804740	1462200	3239500	1863900	2243400	2833500			364	1245	310	1050;1051;1052;1053;1054;1055	1134;1135;1136;1137;1138;1139	1136		1313		6
ATVVESSEKAYSEAHEISK	GlyGly (K)	2178.0441	0.044056244	1034	sp|P61981|1433G_HUMAN	yes	yes	0	0	1	0	1	1	1								28.321	28.321	3	0.020636	5775	20190821_JH_EV_Ubi	50.831	21.098	1979300	1163000	816340	0	0	0	0	0	0	0			365	1034	311	1056;1057	1140;1141	1140		1011		2
ATVVVEATEPEPSGSIANPAASTSPSLSHR	Acetyl (Protein N-term)	3003.4785	0.47852266	860	sp|P46821|MAP1B_HUMAN	yes	yes	1	0	0	0	0			1					1		43.871	43.871	3	3.9229E-11	13176	20190902_JH_WT_Ubi_2	102.46	72.991	5688400	0	0	3666600	0	0	0	0	2021800	0			366	860	312	1058;1059	1142;1143	1143				2
ATYATSDFTLLELNNAANPAFNLFWAGWDR	Unmodified	3388.6153	0.61529091	10	CON__P15636	yes	yes	0	0	0	0	0					1			1	1	58.073	58.073	3	1.6416E-50	13596	20190902_JH_EV_Ubi_3	181.96	154.83	4176200	0	0	0	0	1567000	0	0	1169300	1439900		+	367	10	313	1060;1061;1062	1144;1145;1146;1147;1148	1144				5
AVAFQNPQTHVIENLHAAAYR	Unmodified	2349.1978	0.19781197	655	sp|P22695|QCR2_HUMAN	yes	yes	0	0	0	0	0				1					1	33.896	33.896	3;4	2.1137E-08	9409	20190902_JH_WT_Ubi_3	112.91	76.456	12384000	0	0	0	9505200	0	0	0	0	2879100			368	655	314	1063;1064	1149;1150	1150				2
AVAGNISDPGLQK	Unmodified	1268.6725	0.67246486	610	sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN	yes	no	0	0	0	0	0						1				27.823	27.823	2	0.0011565	6543	20190902_JH_MUT_Ubi_2	108.47	65.223	378500	0	0	0	0	0	378500	0	0	0			369	610	315	1065	1151	1151				1
AVAGNISDPGLQKSFLDSGYR	GlyGly (K)	2308.1448	0.14477334	610	sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN	yes	no	0	0	1	0	1							1			37.579	37.579	3	7.1644E-06	9541	20190902_JH_MUT_Ubi_3	95.414	59.941	3550000	0	0	0	0	0	0	3550000	0	0			370	610	316	1066	1152	1152		595		1
AVAKQQNVQSASQDEK	GlyGly (K)	1843.9024	0.90241781	1400	sp|Q2M389|WASC4_HUMAN	yes	yes	0	0	1	0	1			1						1	16.936	16.936	3	0.0060872	3086	20190821_JH_WT_Ubi	72.315	45.053	3136100	0	0	1602800	0	0	0	0	0	1533400			371	1400	317	1067;1068	1153;1154	1153		1428		2
AVASQLDCNFLKVVSSSIVDK	GlyGly (K)	2393.2261	0.22606013	1052	sp|P62333|PRS10_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	47.597	47.597	3	3.7639E-29	13015	20190821_JH_EV_Ubi	164.74	134.47	153950000	10732000	8611800	66846000	4092000	2181200	6986500	5372200	18268000	30860000			372	1052	318	1069;1070;1071;1072;1073;1074;1075;1076;1077	1155;1156;1157;1158;1159;1160;1161;1162;1163	1155		1025		9
AVATVGPISVAIDAGHESFLFYK	Unmodified	2391.2474	0.2474475	450	sp|P07711|CATL1_HUMAN	yes	yes	0	0	0	0	0		1	1							49.932	49.932	3	0.0013778	13880	20190821_JH_WT_Ubi	66.325	43.225	7767100	0	1218700	6548400	0	0	0	0	0	0			373	450	319	1078;1079	1164;1165;1166	1166				3
AVDHINSTIAPALISSGLSVVEQEK	Unmodified	2577.365	0.36499645	483	sp|P09104|ENOG_HUMAN	yes	yes	0	0	0	0	0			1							47.674	47.674	3	0.0010577	13120	20190821_JH_WT_Ubi	63.573	38.165	3760200	0	0	3760200	0	0	0	0	0	0			374	483	320	1080	1167	1167				1
AVEHINKTIAPALVSK	GlyGly (K)	1804.0207	0.020682448	435	sp|P06733|ENOA_HUMAN	yes	yes	0	0	1	0	1		1				1	1			27.64	27.64	4	0.0057424	5193	20190821_JH_MUT_Ubi	70.47	50.777	10323000	0	1786900	0	0	0	4744200	3792100	0	0			375	435	321	1081;1082;1083	1168;1169;1170	1168		427		3
AVELLGDIVQNCSLEDSQIEK	Unmodified	2359.1577	0.15770579	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0								1	1	47.105	47.105	3	2.9626E-11	13802	20190902_JH_WT_Ubi_3	125.79	85.932	4982500	0	0	0	0	0	0	0	2271000	2711400			376	744	322	1084;1085	1171;1172	1172				2
AVENIQINEEDNEISMLQEKER	Oxidation (M);GlyGly (K)	2760.2872	0.28721642	639	sp|P21583-3|SCF_HUMAN;sp|P21583-2|SCF_HUMAN;sp|P21583|SCF_HUMAN	yes	no	0	0	1	1	1	1									36.449	36.449	3	0.00090919	8941	20190821_JH_EV_Ubi	73.984	49.305	2822200	2822200	0	0	0	0	0	0	0	0			377	639	323	1086	1173	1173		611	392	1
AVENIQINEEDNEISMLQEKER	GlyGly (K)	2744.2923	0.29230179	639	sp|P21583-3|SCF_HUMAN;sp|P21583-2|SCF_HUMAN;sp|P21583|SCF_HUMAN	yes	no	0	0	1	0	1	1									38.274	38.274	3	1.2653E-05	9499	20190821_JH_EV_Ubi	88	61.648	1984800	1984800	0	0	0	0	0	0	0	0			378	639	323	1087	1174	1174		611		1
AVENIQINEEDNEISMLQEKER	Oxidation (M);GlyGly (K);Deamidation (NQ)	2761.2712	0.271232	639	sp|P21583-3|SCF_HUMAN;sp|P21583-2|SCF_HUMAN;sp|P21583|SCF_HUMAN	yes	no	0	1	1	1	1						1				35.992	35.992	3	0.0055517	9732	20190902_JH_MUT_Ubi_2	71.853	45.866	861590	0	0	0	0	0	861590	0	0	0			379	639	323	1088	1175	1175	225;875	611	392	1
AVFQANQENLPILKR	GlyGly (K)	1854.0112	0.011180394	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	0	1						1				35.38	35.38	3	0.017841	9429	20190902_JH_MUT_Ubi_2	65.956	39.131	0	0	0	0	0	0	0	0	0	0			380	418	324	1089	1176	1176		389		1
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	0	0			1					1	1	48.764	48.764	3	1.4092E-07	14244	20190902_JH_WT_Ubi_3	135.14	89.145	9318100	0	0	3305200	0	0	0	0	3285100	2727800			381	1097;1515;1858	325	1090;1091;1092	1177;1178;1179	1179				3
AVIGMTAGATGAFVGTPAEVALIR	Unmodified	2272.2249	0.22493792	1145	sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN	yes	no	0	0	0	0	0	1									50.438	50.438	3	0.02356	13717	20190821_JH_EV_Ubi	39.549	1.0953	926930	926930	0	0	0	0	0	0	0	0			382	1145	326	1093	1180	1180				1
AVIGMTAGATGAFVGTPAEVALIR	Oxidation (M)	2288.2199	0.21985254	1145	sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN	yes	no	0	0	0	1	0				1						47.079	47.079	3	0.0082702	11770	20190902_JH_EV_Ubi_2	50.924	27.35	1200600	0	0	0	1200600	0	0	0	0	0			383	1145	326	1094	1181	1181			714	1
AVKDTLSNPQSPQPSPYNSPK	GlyGly (K)	2368.1659	0.16590271	1808	sp|Q96PU5-9|NED4L_HUMAN;sp|Q96PU5-4|NED4L_HUMAN;sp|Q96PU5-2|NED4L_HUMAN;sp|Q96PU5-6|NED4L_HUMAN;sp|Q96PU5-5|NED4L_HUMAN;sp|Q96PU5-7|NED4L_HUMAN;sp|Q96PU5|NED4L_HUMAN;sp|Q96PU5-3|NED4L_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1		1	27.495	27.495	3	2.5854E-45	6109	20190902_JH_MUT_Ubi_3	186.74	140.17	52840000	0	10491000	0	4036600	2691700	9987900	16344000	0	9287600			384	1808	327	1095;1096;1097;1098;1099;1100;1101	1182;1183;1184;1185;1186;1187;1188	1186		1768;1769		7
AVKDTLSNPQSPQPSPYNSPK	GlyGly (K);Deamidation (NQ)	2369.1499	0.1499183	1808	sp|Q96PU5-9|NED4L_HUMAN;sp|Q96PU5-4|NED4L_HUMAN;sp|Q96PU5-2|NED4L_HUMAN;sp|Q96PU5-6|NED4L_HUMAN;sp|Q96PU5-5|NED4L_HUMAN;sp|Q96PU5-7|NED4L_HUMAN;sp|Q96PU5|NED4L_HUMAN;sp|Q96PU5-3|NED4L_HUMAN	yes	no	0	1	1	0	1		1				1	1			28.208	28.208	3	2.4252E-10	6335	20190902_JH_MUT_Ubi_3	126.04	89.234	5810000	0	912330	0	0	0	2899100	1998600	0	0			385	1808	327	1102;1103;1104	1189;1190;1191	1191	578;1193	1768;1769		3
AVPETRPNHTIYINNLNEK	Acetyl (Protein N-term)	2264.1549	0.1549441	482	sp|P09012|SNRPA_HUMAN	yes	yes	1	0	0	0	1				1						32.809	32.809	3	0.018794	7864	20190902_JH_EV_Ubi_2	46.621	9.384	868810	0	0	0	868810	0	0	0	0	0			386	482	328	1105	1192	1192				1
AVSSAIAQLLGEVAQGNENYAGIAAR	Unmodified	2572.3245	0.32452862	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0			1							54.051	54.051	3	2.2181E-10	15480	20190821_JH_WT_Ubi	106.72	83.549	3278700	0	0	3278700	0	0	0	0	0	0			387	2230	329	1106	1193	1193				1
AVTEQGHELSNEER	Unmodified	1597.7332	0.73322721	749	sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN	yes	no	0	0	0	0	0			1					1	1	19.958	19.958	3	7.3183E-06	3622	20190821_JH_WT_Ubi	124.51	78.635	42775000	0	0	0	0	0	0	0	23351000	19424000			388	749	330	1107;1108;1109	1194;1195;1196	1194				3
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	Unmodified	2793.5463	0.54627206	2136	sp|Q9UHX1-4|PUF60_HUMAN;sp|Q9UHX1-6|PUF60_HUMAN;sp|Q9UHX1-2|PUF60_HUMAN;sp|Q9UHX1-3|PUF60_HUMAN;sp|Q9UHX1-5|PUF60_HUMAN;sp|Q9UHX1|PUF60_HUMAN	yes	no	0	0	0	0	0			1							53.984	53.984	3	0.00093441	15450	20190821_JH_WT_Ubi	51.621	25.818	2564400	0	0	2564400	0	0	0	0	0	0			389	2136	331	1110	1197	1197				1
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	Oxidation (M)	2809.5412	0.54118668	2136	sp|Q9UHX1-4|PUF60_HUMAN;sp|Q9UHX1-6|PUF60_HUMAN;sp|Q9UHX1-2|PUF60_HUMAN;sp|Q9UHX1-3|PUF60_HUMAN;sp|Q9UHX1-5|PUF60_HUMAN;sp|Q9UHX1|PUF60_HUMAN	yes	no	0	0	0	1	0								1	1	51.456	51.456	3	6.4345E-05	14967	20190902_JH_WT_Ubi_3	72.028	42.425	3649700	0	0	0	0	0	0	0	1772800	1876900			390	2136	331	1111;1112	1198;1199	1199			1125	2
AVVHGILMGVPVPFPIPEPDGCK	Oxidation (M)	2444.2596	0.25960887	1030	sp|P61916-2|NPC2_HUMAN;sp|P61916|NPC2_HUMAN	yes	no	0	0	0	1	0	1		1	1	1		1	1	1	49.103	49.103	3	4.3616E-06	13456	20190821_JH_EV_Ubi	92.474	63.824	14116000	2731800	0	4757700	590520	0	0	828060	2398800	2809300			391	1030	332	1113;1114;1115;1116;1117;1118;1119	1200;1201;1202;1203;1204;1205;1206	1200			638	6
AVVHGILMGVPVPFPIPEPDGCK	Unmodified	2428.2647	0.26469424	1030	sp|P61916-2|NPC2_HUMAN;sp|P61916|NPC2_HUMAN	yes	no	0	0	0	0	0			1			1				51.835	51.835	3	0.00051416	14705	20190821_JH_WT_Ubi	73.21	28.163	3149100	0	0	2603300	0	0	545810	0	0	0			392	1030	332	1120;1121	1207;1208	1208				2
AVVKEPLLPPEDDTR	GlyGly (K)	1791.9367	0.93667805	538	sp|P12830-2|CADH1_HUMAN;sp|P12830|CADH1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	31.847	31.847	3	0.0001057	8613	20190902_JH_WT_Ubi_3	113.25	57.529	162350000	10289000	14607000	12557000	17445000	12319000	24236000	34188000	18789000	17924000			393	538	333	1122;1123;1124;1125;1126;1127;1128;1129;1130	1209;1210;1211;1212;1213;1214;1215;1216;1217	1217		532		9
AWAGSPKGTIQVITQGTSLK	GlyGly (K)	2156.159	0.15896684	194	sp|O43175|SERA_HUMAN	yes	yes	0	0	1	0	1			1				1			37.316	37.316	3	0.00012994	9419	20190902_JH_MUT_Ubi_3	89.669	64.16	3697400	0	0	2282700	0	0	0	1414700	0	0			394	194	334	1131;1132	1218;1219	1218		175		2
AYASPGPLPVPPPQNKGSFGKNTVK	GlyGly (K);2 Deamidation (NQ)	2666.3704	0.37041618	1569	sp|Q86YF9-2|DZIP1_HUMAN;sp|Q86YF9|DZIP1_HUMAN	yes	no	0	2	1	0	2		1								48.149	48.149	4	0.020636	12574	20190821_JH_MUT_Ubi	47.499	21.611	2509600	0	2509600	0	0	0	0	0	0	0			395	1569	335	1133	1220	1220	510;511;1121	1553;1554		1
AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGK	Unmodified	4410.1168	0.11679104	1611	sp|Q8N3C0|ASCC3_HUMAN	yes	yes	0	0	0	0	0								1		49.599	49.599	4	0.0013549	14870	20190902_JH_WT_Ubi_2	42.863	23.776	1829600	0	0	0	0	0	0	0	1829600	0			396	1611	336	1134	1221	1221				1
AYEEDYGSSLEEDIQADTSGYLER	Unmodified	2739.1671	0.16714409	550	sp|Q5VT79|AXA81_HUMAN;sp|P13928|ANXA8_HUMAN;sp|P13928-3|ANXA8_HUMAN	yes	no	0	0	0	0	0									1	48.243	48.243	3	0.001439	14148	20190902_JH_WT_Ubi_3	63.122	35.513	1001500	0	0	0	0	0	0	0	0	1001500			397	550	337	1135	1222	1222				1
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M)	2765.2789	0.27890034	1097;1515;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN	no	no	0	0	0	1	0	1	1	1	1	1			1	1	38.928	38.928	3	2.5186E-31	9629	20190902_JH_EV_Ubi_2	170.32	136.1	157410000	14947000	4568500	56227000	7969400	5021200	0	0	30092000	38586000			398	1097;1098;1515	338	1136;1137;1138;1139;1140;1141;1142	1223;1224;1225;1226;1227;1228;1229	1224			682	7
AYHEQLSVAEITNACFEPANQMVK	Unmodified	2749.284	0.28398571	1097;1515;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN	no	no	0	0	0	0	0	1	1	1			1		1	1	41.367	41.367	3	4.6508E-23	10145	20190821_JH_MUT_Ubi	149.93	114.54	54136000	4507900	3668100	23800000	0	0	2091000	0	9298900	10770000			399	1097;1098;1515	338	1143;1144;1145;1146;1147;1148	1230;1231;1232;1233;1234;1235	1231				6
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M);Deamidation (NQ)	2766.2629	0.26291592	1097;1515;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN	no	no	0	1	0	1	0			1					1	1	38.677	38.677	3	1.4837E-16	9372	20190821_JH_WT_Ubi	140.51	106.36	10299000	0	0	5479600	0	0	0	0	4819800	0			400	1097;1098;1515	338	1149;1150;1151	1236;1237;1238	1236	359		682	3
AYHEQLTVAEITNACFEPANQMVK	Oxidation (M)	2779.2946	0.2945504	1858	sp|Q9BQE3|TBA1C_HUMAN	yes	yes	0	0	0	1	0	1	1	1					1	1	39.169	39.169	3	3.0737E-30	11607	20190902_JH_WT_Ubi_2	161.97	128.26	41373000	3587000	0	18419000	0	0	0	0	10546000	8821200			401	1858	339	1152;1153;1154;1155;1156	1239;1240;1241;1242;1243	1242			1022	5
AYHEQLTVAEITNACFEPANQMVK	Unmodified	2763.2996	0.29963578	1858	sp|Q9BQE3|TBA1C_HUMAN	yes	yes	0	0	0	0	0			1							41.646	41.646	3	1.4327E-09	10622	20190821_JH_WT_Ubi	112.56	75.444	10604000	0	0	10604000	0	0	0	0	0	0			402	1858	339	1157	1244	1244				1
AYHSFLVEPISCHAWNK	Acetyl (Protein N-term)	2099.9887	0.98873039	174	sp|O15143|ARC1B_HUMAN	yes	yes	1	0	0	0	0		1	1			1	1	1	1	41.574	41.574	3	1.1279E-10	12470	20190902_JH_WT_Ubi_2	142.95	102.09	38291000	0	1621700	21017000	0	0	1928700	1295200	6473700	5955000			403	174	340	1158;1159;1160;1161;1162;1163	1245;1246;1247;1248;1249;1250	1249				6
AYKTTWGDGGENSPCNVVSK	GlyGly (K)	2283.0226	0.022609296	109	sp|O00161|SNP23_HUMAN	yes	yes	0	0	1	0	1						1		1		28.838	28.838	3	0.0029846	8035	20190902_JH_WT_Ubi_2	69.081	34.778	3611300	0	0	0	0	0	1138800	0	2472500	0			404	109	341	1164;1165	1251;1252	1252		92;93		2
AYPLTLGSNIGTTTTAILAALASPGNALR	Unmodified	2827.5444	0.5443578	343	sp|O95436|NPT2B_HUMAN;sp|O95436-2|NPT2B_HUMAN	yes	no	0	0	0	0	0		1								56.883	56.883	3	6.9798E-08	15053	20190821_JH_MUT_Ubi	97.388	83.492	1914400	0	1914400	0	0	0	0	0	0	0			405	343	342	1166	1253	1253				1
AYSDPSTGEPATYGELQQR	Unmodified	2068.9338	0.93377751	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0								1		32.733	32.733	3	7.2265E-10	9337	20190902_JH_WT_Ubi_2	133.86	83.019	2228300	0	0	0	0	0	0	0	2228300	0			406	1332	343	1167	1254	1254				1
AYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQK	Unmodified	4044.8654	0.86537018	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	0	0	0	0			1							45.27	45.27	3	3.3867E-05	12160	20190821_JH_WT_Ubi	65.194	39.972	3716100	0	0	3716100	0	0	0	0	0	0			407	1655	344	1168	1255	1255				1
CEFQDAYVLLSEK	Deamidation (NQ)	1601.7283	0.72832476	515	sp|P10809|CH60_HUMAN	yes	yes	0	1	0	0	0								1		48.668	48.668	2	0.018486	14624	20190902_JH_WT_Ubi_2	72.29	39.202	3710800	0	0	0	0	0	0	0	3710800	0			408	515	345	1169	1256	1256	856			0
CGKAFGQSSDLLK	GlyGly (K);Deamidation (NQ)	1524.7242	0.72424243	2238	sp|Q9Y5A6|ZSC21_HUMAN	yes	yes	0	1	1	0	1						1				31.357	31.357	3	0.01911	7858	20190902_JH_MUT_Ubi_2	74.392	17.979	3757500	0	0	0	0	0	3757500	0	0	0			409	2238	346	1170	1257	1257	1332	2078		0
CGQEEHDVLLSNEEDRK	Deamidation (NQ)	2057.896	0.8960118	2115	sp|Q9UGI8-2|TES_HUMAN;sp|Q9UGI8|TES_HUMAN	yes	no	0	1	0	0	1									1	25.733	25.733	3	0.009074	6685	20190902_JH_WT_Ubi_3	76.574	47.762	0	0	0	0	0	0	0	0	0	0			410	2115	347	1171	1258	1258	1299			1
CLAFHDISPQAPTHFLVIPK	Unmodified	2290.1932	0.19324386	893	sp|P49773|HINT1_HUMAN	yes	yes	0	0	0	0	0			1							41.796	41.796	4	0.03365	10714	20190821_JH_WT_Ubi	33.836	9.5483	3600600	0	0	3600600	0	0	0	0	0	0			411	893	348	1172	1259	1259				1
CLDWWQEGPMYQIYPRSFKDSNK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	3080.3321	0.33205812	1178	sp|Q07837-3|SLC31_HUMAN;sp|Q07837-5|SLC31_HUMAN;sp|Q07837-7|SLC31_HUMAN;sp|Q07837-6|SLC31_HUMAN;sp|Q07837|SLC31_HUMAN	yes	no	0	3	1	1	2		1								29.103	29.103	3	0.027298	5520	20190821_JH_MUT_Ubi	45.696	15.96	0	0	0	0	0	0	0	0	0	0			412	1178	349	1173	1260	1260	387;1003;1004	1169	734	1
CNAAAQLVR	Unmodified	1001.5076	0.50764813	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN;sp|Q8WZ42-3|TITIN_HUMAN;sp|Q8WZ42-10|TITIN_HUMAN;sp|Q8WZ42-9|TITIN_HUMAN	yes	no	0	0	0	0	0					1					23.52	23.52	2	0.025715	5023	20190902_JH_EV_Ubi_3	73.975	15.193	2236700	0	0	0	0	2236700	0	0	0	0			413	1705	350	1174	1261	1261				1
CNEIINWLDKNQTAEK	GlyGly (K);Deamidation (NQ)	2089.9739	0.97386819	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	1	1	0	1		1		1	1	1	1	1	1	41.442	41.442	3	2.892E-24	11722	20190902_JH_MUT_Ubi_2	179.55	111.55	37926000	0	780220	0	3416700	2800100	11025000	5360800	6940100	7602400			414	519	351	1175;1176;1177;1178;1179;1180;1181	1262;1263;1264;1265;1266;1267;1268	1265	201	510		6
CNGILMIVVNAAGK	Unmodified	1458.7687	0.7686902	20		yes	no	0	0	0	0	0	1									30.92	30.92	3	0.0014591	6800	20190821_JH_EV_Ubi	94.402	6.2396	839660	839660	0	0	0	0	0	0	0	0	+		415	20	352	1182	1269	1269				1
CNGVLMIPISEVDK	Oxidation (M)	1589.7793	0.77931447	44		yes	yes	0	0	0	1	0									1	29.3	29.3	3	0.021583	7793	20190902_JH_WT_Ubi_3	60.196	10.863	8987400	0	0	0	0	0	0	0	0	8987400	+		416	44	353	1183	1270	1270			31	1
CNQATTLDNQNIKKAIEVQIQK	4 Deamidation (NQ)	2560.269	0.26904716	1827	sp|Q96T68-2|SETB2_HUMAN;sp|Q96T68-3|SETB2_HUMAN;sp|Q96T68|SETB2_HUMAN	yes	no	0	4	0	0	2								1		28.314	28.314	4	0.028036	7742	20190902_JH_WT_Ubi_2	40.968	10.926	16052000	0	0	0	0	0	0	0	16052000	0			417	1827	354	1184	1271	1271	589;590;1206;1207			1
CNSHLEITIPKDLKLK	3 GlyGly (K);Deamidation (NQ)	2251.1631	0.16306594	1425	sp|Q5FWF5-2|ESCO1_HUMAN;sp|Q5FWF5|ESCO1_HUMAN	yes	no	0	1	3	0	2									1	39.098	39.098	4	0.030485	11115	20190902_JH_WT_Ubi_3	49.298	14.8	1291300	0	0	0	0	0	0	0	0	1291300			418	1425	355	1185	1272	1272	451			0
CPEALFQPSFLGMESCGIHETTFNSIMK	2 Oxidation (M)	3262.4443	0.44432746	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	2	0		1	1						1	45.316	45.316	3	0.00017689	13190	20190902_JH_WT_Ubi_3	71.071	50.8	18579000	0	596360	13635000	0	0	0	0	0	4347600			419	1000;1087	356	1186;1187;1188	1273;1274;1275	1275			612;613	3
CPEALFQPSFLGMESCGIHETTFNSIMK	Oxidation (M);Deamidation (NQ)	3247.4334	0.43342842	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	1	0	1	0						1			1	50.112	50.112	3	0.013875	14701	20190902_JH_WT_Ubi_3	48.913	32.302	20490000	0	0	0	0	0	2591100	0	0	17899000			420	1000;1087	356	1189;1190	1276;1277	1277	327;956		612;613	2
CPEALFQPSFLGMESCGIHETTFNSIMK	2 Oxidation (M);Deamidation (NQ)	3263.4283	0.42834304	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	1	0	2	0							1	1	1	47.73	47.73	3	0.002595	12584	20190902_JH_MUT_Ubi_3	51.811	32.931	76195000	0	0	0	0	0	0	4861600	31593000	39739000			421	1000;1087	356	1191;1192;1193	1278;1279;1280	1278	327;956		612;613	3
CPEALFQPSFLGMESCGIHETTFNSIMK	Oxidation (M)	3246.4494	0.44941284	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	1	0			1							47.654	47.654	3	0.0030982	13072	20190821_JH_WT_Ubi	50.803	32.505	9268900	0	0	9268900	0	0	0	0	0	0			422	1000;1087	356	1194	1281	1281			612;613	1
CPEALFQPSFLGMESCGIHETTFNSIMK	Unmodified	3230.4545	0.45449822	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	0	0			1							50.012	50.012	3	8.4777E-05	14006	20190821_JH_WT_Ubi	73.994	47.367	5041700	0	0	5041700	0	0	0	0	0	0			423	1000;1087	356	1195	1282	1282				1
CPGINQDPGPHKDPALVQDSGLPK	2 GlyGly (K);Deamidation (NQ)	2768.3188	0.31879132	67	sp|A0A1B0GUW6|SPEM3_HUMAN	yes	yes	0	1	2	0	1								1		31.629	31.629	3	0.029396	8941	20190902_JH_WT_Ubi_2	42.908	9.7207	0	0	0	0	0	0	0	0	0	0			424	67	357	1196	1283	1283	23;734	65;66		1
CPNLIHLNLSGNK	GlyGly (K);3 Deamidation (NQ)	1595.7614	0.76135622	354	sp|O95626|AN32D_HUMAN	yes	yes	0	3	1	0	0						1				31.714	31.714	3	0.031949	7958	20190902_JH_MUT_Ubi_2	45.879	19.253	577280	0	0	0	0	0	577280	0	0	0			425	354	358	1197	1284	1284	110;111;112			1
CPNLTHLNLSGNK	Deamidation (NQ)	1467.714	0.7140121	806	sp|P39687|AN32A_HUMAN	yes	yes	0	1	0	0	0									1	31.789	31.789	3	0.025607	8679	20190902_JH_WT_Ubi_3	71.933	21.711	6205500	0	0	0	0	0	0	0	0	6205500			426	806	359	1198	1285	1285	282			1
CPSIAAAIAAVNALHGR	Deamidation (NQ)	1691.8777	0.87772338	1294	sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN	yes	no	0	1	0	0	0					1					47.856	47.856	3	0.0047758	11938	20190902_JH_EV_Ubi_3	76.01	37.336	926470	0	0	0	0	926470	0	0	0	0			427	1294	360	1199	1286	1286	415			1
CSAGLKLSNLMNLGR	Oxidation (M);GlyGly (K);Deamidation (NQ)	1763.8658	0.86583806	1619	sp|Q8N4X5-2|AF1L2_HUMAN;sp|Q8N4X5|AF1L2_HUMAN;sp|Q8N4X5-4|AF1L2_HUMAN	yes	no	0	1	1	1	1					1					38.848	38.848	3	0.036241	9685	20190902_JH_EV_Ubi_3	43.761	10.569	798700	0	0	0	0	798700	0	0	0	0			428	1619	361	1200	1287	1287	526			0
CSEEDLKAIQDMFPNMDQEVIR	2 Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2815.1987	0.19866068	1926	sp|Q9H0E2-2|TOLIP_HUMAN;sp|Q9H0E2|TOLIP_HUMAN	yes	no	0	2	1	2	1						1				41.445	41.445	3	0.0057048	11807	20190902_JH_MUT_Ubi_2	66.702	21.655	0	0	0	0	0	0	0	0	0	0			429	1926	362	1201	1288	1288	616;1242	1862	1050;1051	1
CSEEDLKAIQDMFPNMDQEVIR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2814.2146	0.2146451	1926	sp|Q9H0E2-2|TOLIP_HUMAN;sp|Q9H0E2|TOLIP_HUMAN	yes	no	0	1	1	2	1							1	1	1	41.61	41.61	3	3.232E-06	10826	20190902_JH_MUT_Ubi_3	96.561	61.387	4878000	0	0	0	0	0	0	1754200	1665800	1458000			430	1926	362	1202;1203;1204	1289;1290;1291	1289	616;1242	1862	1050;1051	3
CSNISIGDEVQFEISITSNKCPKK	GlyGly (K);2 Deamidation (NQ)	2869.3474	0.34737383	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	2	1	0	2						1				39.517	39.517	3	0.02383	10960	20190902_JH_MUT_Ubi_2	46.35	10.919	1654100	0	0	0	0	0	1654100	0	0	0			431	429	363	1205	1292	1292	151;152	409;410;411		0
CSSILLHGKEQPLDEELK	GlyGly (K)	2209.1049	0.10488236	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	0	1	1	1		1	1					31.238	31.238	3	7.6232E-15	6424	20190821_JH_MUT_Ubi	153.72	114.92	12505000	3731300	5063700	0	1627400	2082500	0	0	0	0			432	418	364	1206;1207;1208;1209	1293;1294;1295;1296	1296		390		4
CSSILLHGKEQPLDEELK	GlyGly (K);Deamidation (NQ)	2210.0889	0.088897947	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	1	1	0	1		1						1	1	34.106	34.106	3	0.0001809	9842	20190902_JH_WT_Ubi_2	109.48	52.606	37289000	0	5136400	0	0	0	0	0	19396000	12756000			433	418	364	1210;1211;1212	1297;1298;1299	1298	824	390		3
DADSQNPDAPEGK	Unmodified	1342.5637	0.56370227	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	0	0	0			1							19.165	19.165	2	3.4842E-07	3502	20190821_JH_WT_Ubi	160.52	109.46	1884200	0	0	1884200	0	0	0	0	0	0			434	950	365	1213	1300	1300				0
DADSQNPDAPEGKR	GlyGly (K)	1612.7077	0.70774074	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	1	0	1	1									17.807	17.807	3	0.015597	2980	20190821_JH_EV_Ubi	70.628	49.377	408760	408760	0	0	0	0	0	0	0	0			435	950	366	1214	1301	1301		908		1
DADVQNFVSFISK	Unmodified	1468.7198	0.71980898	825	sp|P42126-2|ECI1_HUMAN;sp|P42126|ECI1_HUMAN	yes	no	0	0	0	0	0			1							49.837	49.837	2	0.033826	13962	20190821_JH_WT_Ubi	56.225	25.077	3427200	0	0	3427200	0	0	0	0	0	0			436	825	367	1215	1302	1302				0
DAEAEGLSGTTLLPKLIPSGAGR	GlyGly (K)	2366.2442	0.24415304	2139	sp|Q9UI14|PRAF1_HUMAN	yes	yes	0	0	1	0	1		1				1	1			46.139	46.139	3	4.9266E-05	12210	20190902_JH_MUT_Ubi_3	85.855	41.465	3693800	0	1271800	0	0	0	1124000	1297900	0	0			437	2139	368	1216;1217;1218	1303;1304;1305	1305		2009		3
DAEAWFTSR	Unmodified	1081.4829	0.48287317	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0			1							38.851	38.851	2	0.028189	9631	20190821_JH_WT_Ubi	72.607	32.339	79356000	0	0	79356000	0	0	0	0	0	0		+	438	7;477	369	1219	1306	1306				1
DAFEHIVTQFSSVPVSVVSDSYDIYNACEK	Unmodified	3405.5711	0.57110242	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0			1							54.139	54.139	3	0.00030318	15510	20190821_JH_WT_Ubi	62.291	35.148	5658200	0	0	5658200	0	0	0	0	0	0			439	845	370	1220	1307	1307				1
DAFPVAGQKLIYAGK	GlyGly (K)	1690.9043	0.90425571	964;963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN;sp|P54727|RD23B_HUMAN	no	no	0	0	1	0	1						1		1	1	37.694	37.694	3	0.0045437	10193	20190902_JH_MUT_Ubi_2	79.466	52.008	47790000	0	0	0	0	0	10300000	0	17534000	19956000			440	963;964	371	1221;1222;1223	1308;1309;1310	1308		928;929;933		3
DAFQNAYLELGGLGER	Unmodified	1751.8479	0.84786304	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	0	0	0			1							49.991	49.991	3	0.01018	14002	20190821_JH_WT_Ubi	62.055	24.462	826970	0	0	826970	0	0	0	0	0	0			441	418	372	1224	1311	1311				1
DAGEGGLSLAIEGPSK	Unmodified	1499.7468	0.74675201	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1									40.526	40.526	2	1.5595E-10	10406	20190821_JH_EV_Ubi	145.81	95.62	1780500	1780500	0	0	0	0	0	0	0	0			442	637	373	1225	1312	1312				1
DAGQISGLNVLR	Unmodified	1241.6728	0.67279921	802	sp|P38646|GRP75_HUMAN	yes	yes	0	0	0	0	0								1		40.457	40.457	2	0.013262	11961	20190902_JH_WT_Ubi_2	80.706	15.995	13792000	0	0	0	0	0	0	0	13792000	0			443	802	374	1226	1313	1313				1
DAGTIAGLNVMR	Oxidation (M)	1232.6183	0.6183208	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	1	0				1						34.865	34.865	2	0.00019517	8456	20190902_JH_EV_Ubi_2	115.78	91.55	5575200	0	0	0	5575200	0	0	0	0	0			444	517	375	1227	1314	1314			304	0
DAGYEFDICFTSVQK	Unmodified	1778.7822	0.78215124	612	sp|P18669|PGAM1_HUMAN	yes	yes	0	0	0	0	0			1							47.518	47.518	2	0.019853	13101	20190821_JH_WT_Ubi	63.727	37.02	4078200	0	0	4078200	0	0	0	0	0	0			445	612	376	1228	1315	1315				0
DAGYGGISLAVEGPSKVDIQTEDLEDGTCK	GlyGly (K)	3237.4983	0.4983314	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	0	1		1				1	1			44.368	44.368	3	2.2388E-07	11712	20190902_JH_MUT_Ubi_3	93.179	66.339	4780200	0	2731400	0	0	0	934930	1113900	0	0			446	282	377	1229;1230;1231	1316;1317;1318	1318		271		3
DAHNALLDIQSSGR	Unmodified	1495.7379	0.73791866	102	sp|Q99613-2|EIF3C_HUMAN;sp|Q99613|EIF3C_HUMAN;sp|B5ME19|EIFCL_HUMAN	yes	no	0	0	0	0	0	1							1		32.686	32.686	3	0.032001	7468	20190821_JH_EV_Ubi	48.14	18.136	2100500	698630	0	0	0	0	0	0	1401800	0			447	102	378	1232;1233	1319;1320	1319				2
DAHSVLLSHIFHGR	Unmodified	1587.827	0.82700844	347	sp|O95479|G6PE_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1	1		32.409	32.409	3;4	6.5477E-08	9263	20190902_JH_WT_Ubi_2	144.28	103.91	93444000	1792600	1706700	44191000	3027000	0	3801700	2499200	36426000	0			448	347	379	1234;1235;1236;1237;1238;1239;1240	1321;1322;1323;1324;1325;1326;1327	1327				6
DAIAQAVR	Unmodified	842.46102	0.46101552	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	0			1							25.554	25.554	2	0.029776	4999	20190821_JH_WT_Ubi	84.498	20.933	5998800	0	0	5998800	0	0	0	0	0	0			449	715	380	1241	1328	1328				1
DAIEEKIIIAEVVNK	GlyGly (K)	1796.9884	0.98837927	219	sp|O43795-2|MYO1B_HUMAN;sp|O43795|MYO1B_HUMAN	yes	no	0	0	1	0	1	1	1	1					1		44.101	44.101	3	1.5223E-15	11166	20190821_JH_MUT_Ubi	166.86	76.953	23308000	5824400	2374000	10383000	0	0	0	0	4726400	0			450	219	381	1242;1243;1244;1245	1329;1330;1331;1332	1330		200		4
DAKACVVHGSDLK	GlyGly (K)	1512.7355	0.73547582	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN	yes	no	0	0	1	0	1								1	1	21.129	21.129	4	0.02525	5273	20190902_JH_WT_Ubi_3	58.098	35.007	13411000	0	0	0	0	0	0	0	8249200	5161700			451	418	382	1246;1247	1333;1334	1334		386;391		2
DAKPPTGPSPATPAR	GlyGly (K)	1575.8005	0.80051892	820	sp|P41231|P2RY2_HUMAN	yes	yes	0	0	1	0	1								1		23.243	23.243	3	0.022004	6042	20190902_JH_WT_Ubi_2	59.248	28.764	2662800	0	0	0	0	0	0	0	2662800	0			452	820	383	1248	1335	1335		793		1
DAKTAASGIPYHSEVPVSLK	GlyGly (K)	2183.1222	0.12224699	1129	sp|Q01082|SPTB2_HUMAN	yes	yes	0	0	1	0	1						1				32.949	32.949	3	0.031302	8443	20190902_JH_MUT_Ubi_2	45.347	18.076	2629300	0	0	0	0	0	2629300	0	0	0			453	1129	384	1249	1336	1336				1
DALDGPAAEAEPEHSFDGLR	Unmodified	2095.9447	0.94467655	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1	1	1			1	1	37.564	37.564	3	5.6689E-05	11111	20190902_JH_WT_Ubi_2	95.197	59.538	43772000	0	0	11214000	1099700	1034500	0	0	13580000	16844000			454	1332	385	1250;1251;1252;1253;1254	1337;1338;1339;1340;1341	1340				5
DALLSALSIQNYHLECNETK	Unmodified	2318.1213	0.12126071	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0								1		45.411	45.411	3	0.035488	13656	20190902_JH_WT_Ubi_2	37.171	4.1758	1358100	0	0	0	0	0	0	0	1358100	0			455	1129;1130	386	1255	1342	1342				1
DALNIETAIKTK	GlyGly (K)	1429.7777	0.77765821	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1	1	1	33.457	33.457	3	4.9653E-08	8067	20190902_JH_MUT_Ubi_3	154.67	111.89	17083000	1090000	2337800	0	1012700	1051600	3360400	2071400	3209800	2949500			456	446	387	1256;1257;1258;1259;1260;1261;1262;1263	1343;1344;1345;1346;1347;1348;1349;1350	1348		437;438		7
DALSDLALHFLNK	Unmodified	1455.7722	0.7721789	913	sp|P50991|TCPD_HUMAN;sp|P50991-2|TCPD_HUMAN	yes	no	0	0	0	0	0		1	1	1		1	1	2	1	52.43	52.43	2;3	0.00031135	13908	20190821_JH_MUT_Ubi	115	68.185	33316000	0	4084800	8750900	202380	0	3499000	3674200	6325100	6779400			457	913	388	1264;1265;1266;1267;1268;1269;1270;1271	1351;1352;1353;1354;1355;1356;1357;1358	1352				8
DALSHFVIAGAVTGSLFR	Unmodified	1859.9894	0.98938232	2001	sp|Q9NPL8|TIDC1_HUMAN	yes	yes	0	0	0	0	0	1	1	1							51.364	51.364	3	0.0006964	14425	20190821_JH_WT_Ubi	82.837	48.393	2888900	1127700	480550	1280700	0	0	0	0	0	0			458	2001	389	1272;1273;1274	1359;1360;1361	1361				3
DAMQYASESK	Oxidation (M)	1144.4707	0.47065351	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	1	0			1							19.359	19.359	2	0.026904	3545	20190821_JH_WT_Ubi	64.73	42.984	2836200	0	0	2836200	0	0	0	0	0	0			459	1123	390	1275	1362	1362			693	0
DANVSGTLVSSSTLEK	Unmodified	1606.805	0.80499517	1785	sp|Q96IZ0|PAWR_HUMAN	yes	yes	0	0	0	0	0	1								1	35.338	35.338	2	0.00016228	8534	20190821_JH_EV_Ubi	114.31	69.152	5864300	1388600	0	0	0	0	0	0	0	4475600			460	1785	391	1276;1277	1363;1364	1363				1
DASIVGFFDDSFSEAHSEFLK	Unmodified	2347.0645	0.064457335	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1		1	1	53.565	53.565	3	0.00035576	15462	20190902_JH_WT_Ubi_3	76.378	45.433	61832000	4128100	3573500	22225000	0	0	2152000	0	21278000	8475700			461	730	392	1278;1279;1280;1281;1282;1283	1365;1366;1367;1368;1369;1370	1370				6
DATFQRLLDDNFCNKLSPCIMITGK	GlyGly (K);3 Deamidation (NQ)	3073.4195	0.41949292	2241	sp|Q9Y5K1-2|SPO11_HUMAN;sp|Q9Y5K1|SPO11_HUMAN	yes	no	0	3	1	0	2		1								51.139	51.139	3	0.024052	13537	20190821_JH_MUT_Ubi	52.509	26.032	0	0	0	0	0	0	0	0	0	0			462	2241	393	1284	1371	1371	705;706;1336	2079		1
DATNVGDEGGFAPNILENK	Unmodified	1959.9174	0.91739917	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	0	0	0			1	1	1	1		1	1	43.271	43.271	2;3	4.7814E-31	10958	20190902_JH_EV_Ubi_2	180.1	113.11	28700000	0	0	4940300	1545800	989970	8140800	0	5900500	7182900			463	435	394	1285;1286;1287;1288;1289;1290	1372;1373;1374;1375;1376;1377	1372				5
DAVAITKQFLK	GlyGly (K)	1346.7558	0.75580056	2017	sp|Q9NRW7-2|VPS45_HUMAN;sp|Q9NRW7|VPS45_HUMAN	yes	no	0	0	1	0	1			1							37.406	37.406	2	0.003163	8908	20190821_JH_WT_Ubi	125.68	62.148	8696100	0	0	8696100	0	0	0	0	0	0			464	2017	395	1291	1378	1378		1925		0
DAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYR	Unmodified	3946.8895	0.88947644	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0			1							55.087	55.087	3	9.9089E-10	15836	20190821_JH_WT_Ubi	91.869	66.338	12084000	0	0	12084000	0	0	0	0	0	0			465	645	396	1292	1379	1379				1
DAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYR	Deamidation (NQ)	3947.8735	0.87349203	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	1	0	0	0								1		55.298	55.298	3	0.0016362	16400	20190902_JH_WT_Ubi_2	54.425	23.57	2181800	0	0	0	0	0	0	0	2181800	0			466	645	396	1293	1380	1380	227;876			1
DAVLLVFANKQDLPNAMNAAEITDK	Oxidation (M);GlyGly (K)	2830.4171	0.41710838	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P61204-2|ARF3_HUMAN	yes	no	0	0	1	1	1			1						1	45.883	45.883	3	6.0451E-10	13402	20190902_JH_WT_Ubi_3	106.23	80.305	14436000	0	0	11246000	0	0	0	0	0	3190700			467	1018	397	1294;1295	1381;1382	1382		1003	634	2
DAVLLVFANKQDLPNAMNAAEITDK	GlyGly (K)	2814.4222	0.42219376	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P61204-2|ARF3_HUMAN	yes	no	0	0	1	0	1			1							49.108	49.108	3	9.7753E-20	13652	20190821_JH_WT_Ubi	136.77	109.93	5572700	0	0	5572700	0	0	0	0	0	0			468	1018	397	1296	1383	1383		1003		1
DAVNQNTKLLQSAK	GlyGly (K)	1642.8638	0.86384745	125	sp|O00418|EF2K_HUMAN	yes	yes	0	0	1	0	1								1		26.813	26.813	3	0.0046666	7247	20190902_JH_WT_Ubi_2	83.243	31.516	5810300	0	0	0	0	0	0	0	5810300	0			469	125	398	1297	1384	1384		114		1
DAVTYTEHAK	Unmodified	1133.5353	0.53530267	1057	sp|P62805|H4_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	19.553	19.553	3	0.0079237	3564	20190821_JH_WT_Ubi	90.15	50.604	109990000	0	413600	24177000	0	0	0	0	42349000	43055000			470	1057	399	1298;1299;1300;1301	1385;1386;1387;1388	1386				4
DAVVTYTAESKGVVK	GlyGly (K)	1679.873	0.87301516	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1						1			29.053	29.053	3	0.026328	6186	20190821_JH_EV_Ubi	56.29	18.864	4126300	1730800	0	0	0	0	0	2395500	0	0			471	970	400	1302;1303	1389;1390	1389		939		2
DCAESCTPSYTLQGQVSSGTSSTQCCQEDLCNEK	Unmodified	3886.5332	0.53323141	1286	sp|Q14210|LY6D_HUMAN	yes	yes	0	0	0	0	0			1					1	1	36.526	36.526	3	4.946E-96	10712	20190902_JH_WT_Ubi_2	212.07	202.24	22454000	0	0	11835000	0	0	0	0	4609400	6010200			472	1286	401	1304;1305;1306	1391;1392;1393;1394	1392				3
DCFIIYQGHHGDVGAPIADVILPGAAYTEK	Unmodified	3226.5757	0.57573428	708	sp|P28331-3|NDUS1_HUMAN;sp|P28331-4|NDUS1_HUMAN;sp|P28331-5|NDUS1_HUMAN;sp|P28331|NDUS1_HUMAN;sp|P28331-2|NDUS1_HUMAN	yes	no	0	0	0	0	0			1							47.292	47.292	4	0.023546	12948	20190821_JH_WT_Ubi	32.065	11.583	3965500	0	0	3965500	0	0	0	0	0	0			473	708	402	1307	1395	1395				1
DCGATWVVLGHSER	Unmodified	1585.7307	0.73072479	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	35.385	35.385	3	3.594E-08	10358	20190902_JH_WT_Ubi_2	145.83	105.92	415380000	4324000	5691300	147200000	3952400	5084800	9666600	9009200	111600000	118860000			474	997	403	1308;1309;1310;1311;1312;1313;1314;1315;1316	1396;1397;1398;1399;1400;1401;1402;1403;1404	1403				9
DCIGGCSDLVSLQQSGELLTR	Unmodified	2307.0835	0.083494993	780	sp|P35754|GLRX1_HUMAN	yes	yes	0	0	0	0	0			1							47.288	47.288	3	0.0042503	12940	20190821_JH_WT_Ubi	71.148	31.624	0	0	0	0	0	0	0	0	0	0			475	780	404	1317	1405	1405				1
DCLTESNLIKVR	GlyGly (K)	1560.793	0.7929907	645	sp|P21980|TGM2_HUMAN	yes	yes	0	0	1	0	1			1			1	1			32.772	32.772	3	1.0837E-05	8346	20190902_JH_MUT_Ubi_2	140.78	76.14	15900000	0	0	6924000	0	0	4334100	4642000	0	0			476	645	405	1318;1319;1320	1406;1407;1408	1406		616		3
DCPTGHLTVDEFK	Unmodified	1517.682	0.68204326	795	sp|P37235|HPCL1_HUMAN	yes	yes	0	0	0	0	0			1					1		32.645	32.645	3	0.03275	9320	20190902_JH_WT_Ubi_2	50.145	14.237	7558300	0	0	3685400	0	0	0	0	3872900	0			477	795	406	1321;1322	1409;1410	1410				2
DCVGPEVEKACANPAAGSVILLENLR	GlyGly (K)	2895.4219	0.42187618	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	46.687	46.687	3	4.0139E-34	12729	20190821_JH_EV_Ubi	162.98	76.274	42131000	1981300	6833400	13735000	0	669080	5070600	3592600	3922000	6326800			478	383	407	1323;1324;1325;1326;1327;1328;1329;1330	1411;1412;1413;1414;1415;1416;1417;1418;1419;1420	1411		345		10
DCVGPEVEKACANPAAGSVILLENLR	GlyGly (K);Deamidation (NQ)	2896.4059	0.40589176	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	1	1	0	1				1						46.51	46.51	3	9.1021E-10	11677	20190902_JH_EV_Ubi_2	125.31	53.143	0	0	0	0	0	0	0	0	0	0			479	383	407	1331	1421	1421	122	345		1
DDAGWSPLHIAASAGR	Unmodified	1622.7801	0.78011783	303	sp|O75832-2|PSD10_HUMAN;sp|O75832|PSD10_HUMAN	yes	no	0	0	0	0	0								1	1	39.881	39.881	3	0.0078909	11860	20190902_JH_WT_Ubi_2	65.374	27.581	3047000	0	0	0	0	0	0	0	1229900	1817100			480	303	408	1332;1333	1422;1423	1422				2
DDAHALHLLALLFSAQK	Unmodified	1862.005	0.0050323835	2168	sp|Q9ULT0|TTC7A_HUMAN;sp|Q9ULT0-4|TTC7A_HUMAN	yes	no	0	0	0	0	0			1							52.406	52.406	3	0.00014348	14810	20190821_JH_WT_Ubi	104.21	72.692	841650	0	0	841650	0	0	0	0	0	0			481	2168	409	1334	1424	1424				1
DDDIAALVVDNGSGMCK	Acetyl (Protein N-term)	1820.7921	0.792064	1000	sp|P60709|ACTB_HUMAN	yes	yes	1	0	0	0	0		1								53.23	53.23	2	0.0016243	14105	20190821_JH_MUT_Ubi	71.879	41.543	415860	0	415860	0	0	0	0	0	0	0			482	1000	410	1335	1425	1425				1
DDDIAALVVDNGSGMCK	Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ)	1837.771	0.77099421	1000	sp|P60709|ACTB_HUMAN	yes	yes	1	1	0	1	0									1	51.906	51.906	2	1.2794E-14	15376	20190902_JH_WT_Ubi_3	146.79	113.38	20750000	0	0	0	0	0	0	0	0	20750000			483	1000	410	1336	1426	1426	328		614	0
DDDSNFHMDFIVAASNLR	Unmodified	2065.9164	0.91635331	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	0	0		1	1				1			48.557	48.557	3	3.1342E-05	13446	20190821_JH_WT_Ubi	108.34	69.724	7002500	0	1338400	4962100	0	0	0	702000	0	0			484	651	411	1337;1338;1339	1427;1428;1429	1429				3
DDDSNFHMDFIVAASNLR	Oxidation (M)	2081.9113	0.91126793	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	1	0			1					1		43.387	43.387	3	0.0010532	13038	20190902_JH_WT_Ubi_2	80.738	43.084	5025100	0	0	2287900	0	0	0	0	2737100	0			485	651	411	1340;1341	1430;1431	1431			401	2
DDEFTHLYTLIVRPDNTYEVK	Unmodified	2567.2544	0.25438337	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	1			1					1	1	48.348	48.348	4	4.5986E-06	13375	20190821_JH_WT_Ubi	97.291	67.449	8682600	0	0	4522500	0	0	0	0	2519300	1640900			486	702	412	1342;1343;1344	1432;1433;1434	1432				3
DDETMYVESK	Oxidation (M)	1231.4914	0.49144853	175	sp|O15144|ARPC2_HUMAN	yes	yes	0	0	0	1	0								1		25.663	25.663	2	0.017254	6835	20190902_JH_WT_Ubi_2	78.334	52.775	2677500	0	0	0	0	0	0	0	2677500	0			487	175	413	1345	1435	1435			75	0
DDEYDYLFK	Unmodified	1206.5081	0.50808487	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN;sp|P62491-2|RB11A_HUMAN;sp|P62491|RB11A_HUMAN	yes	no	0	0	0	0	0	1		1							44.487	44.487	2	0.018837	11908	20190821_JH_EV_Ubi	101.6	55.175	2753600	267900	0	2485700	0	0	0	0	0	0			488	1370	414	1346;1347	1436;1437	1436				0
DDGSAVIWVTFK	Unmodified	1336.6663	0.66631685	1268	sp|Q14019|COTL1_HUMAN	yes	yes	0	0	0	0	0						1				49.722	49.722	2	0.018269	14272	20190902_JH_MUT_Ubi_2	69.672	35.583	665470	0	0	0	0	0	665470	0	0	0			489	1268	415	1348	1438	1438				0
DDGSWEVIEGYR	Unmodified	1424.6208	0.62082322	374	sp|P00367|DHE3_HUMAN;sp|P49448|DHE4_HUMAN	yes	no	0	0	0	0	0			1							43.548	43.548	2	0.02906	11400	20190821_JH_WT_Ubi	61.353	34.239	1406200	0	0	1406200	0	0	0	0	0	0			490	374	416	1349	1439	1439				0
DDKHGSYEDAVHSGALND	GlyGly (K)	2042.8566	0.85658982	607	sp|P17987|TCPA_HUMAN	yes	yes	0	0	1	0	1	1		1	1	1	1	1		1	25.964	25.964	3	8.1329E-05	5025	20190821_JH_EV_Ubi	105.28	85.229	26607000	2601500	0	3370200	4958400	4281800	3991300	3580300	0	3823800			491	607	417	1350;1351;1352;1353;1354;1355;1356	1440;1441;1442;1443;1444;1445;1446	1440		594		7
DDNMFQIGK	Oxidation (M)	1082.4703	0.47025958	957	sp|P53999|TCP4_HUMAN	yes	yes	0	0	0	1	0			1							31.268	31.268	2	0.019577	6732	20190821_JH_WT_Ubi	75.043	50.841	1076700	0	0	1076700	0	0	0	0	0	0			492	957	418	1357	1447	1447			600	0
DDPLTNLNTAFDVAEKYLDIPK	GlyGly (K)	2605.2912	0.29116281	537	sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	yes	no	0	0	1	0	1							1			56.201	56.201	3	0.0017982	14054	20190902_JH_MUT_Ubi_3	69.07	40.239	836170	0	0	0	0	0	0	836170	0	0			493	537	419	1358	1448	1448		531		1
DDPVTNLNNAFEVAEKYLDIPK	GlyGly (K)	2618.2864	0.28641178	214	sp|O43707|ACTN4_HUMAN	yes	yes	0	0	1	0	1	1	1								55.489	55.489	3	0.0013825	14820	20190821_JH_MUT_Ubi	70.987	41.861	2829400	702550	2126900	0	0	0	0	0	0	0			494	214	420	1359;1360	1449;1450	1450		194		2
DDQLKVIECNVRVSR	Unmodified	1829.9418	0.9417802	701	sp|P27708|PYR1_HUMAN	yes	yes	0	0	0	0	2						1				40.72	40.72	2	0.0033289	11463	20190902_JH_MUT_Ubi_2	87.184	16.243	0	0	0	0	0	0	0	0	0	0			495	701	421	1361	1451	1451				1
DDQVTVIGAGVTLHEALAAAELLK	Unmodified	2433.3115	0.31150432	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	0		1	1			1				54.691	54.691	3	7.2551E-13	15680	20190821_JH_WT_Ubi	131.64	83.269	9609200	0	1741900	7243800	0	0	623480	0	0	0			496	715	422	1362;1363;1364	1452;1453;1454;1455	1455				4
DDVAQTDLLQIDPNFGSK	Unmodified	1974.9535	0.95345032	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	0	0	0			1							48.944	48.944	2	7.1949E-11	13589	20190821_JH_WT_Ubi	141.06	85.803	2470800	0	0	2470800	0	0	0	0	0	0			497	462;463	423	1365	1456	1456				0
DDVFGYPQQFEDKPALSK	GlyGly (K)	2197.0328	0.032763276	1738	sp|Q93008-1|USP9X_HUMAN;sp|Q93008|USP9X_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.903	39.903	3	0.0056383	9612	20190821_JH_MUT_Ubi	67.646	39.434	43427000	5558900	4517400	4077300	2968000	3520400	6273600	6511500	4514600	5484800			498	1738	424	1366;1367;1368;1369;1370;1371;1372;1373;1374	1457;1458;1459;1460;1461;1462;1463;1464;1465	1460		1728;1729		9
DDVFLSVPCILGQNGISDLVK	Deamidation (NQ)	2289.1562	0.15624923	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN	yes	no	0	1	0	0	0							1			57.384	57.384	3	0.025168	14188	20190902_JH_MUT_Ubi_3	52.432	23.619	711980	0	0	0	0	0	0	711980	0	0			499	373	425	1375	1466	1466	118			1
DDYIGQVAK	GlyGly (K);Deamidation (NQ)	1122.5193	0.51931826	1574	sp|Q8IVF4|DYH10_HUMAN	yes	yes	0	1	1	0	0	1									33.677	33.677	2	0.023594	7813	20190821_JH_EV_Ubi	69.198	6.5393	1015800	1015800	0	0	0	0	0	0	0	0			500	1574	426	1376	1467	1467	1122	1572		0
DEEEALIDEQSELKAIEK	GlyGly (K)	2202.054	0.053952229	274	sp|O75185|AT2C2_HUMAN;sp|O75185-3|AT2C2_HUMAN	yes	no	0	0	1	0	1	1									40.951	40.951	3	0.0069124	10535	20190821_JH_EV_Ubi	65.107	25.722	2544600	2544600	0	0	0	0	0	0	0	0			501	274	427	1377	1468	1468		262		1
DEFEGLFKQPAENVNQYLTDPK	GlyGly (K)	2695.2766	0.27657538	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1		46.559	46.559	3	4.7348E-29	12660	20190821_JH_EV_Ubi	159.26	121.09	13086000	1745000	2860900	3616700	0	0	2045000	1517300	1301500	0			502	651	428	1378;1379;1380;1381;1382;1383	1469;1470;1471;1472;1473;1474	1469		622		6
DEGIQKLGVSSGLVR	GlyGly (K)	1670.8951	0.89514758	2065	sp|Q9NYQ6|CELR1_HUMAN	yes	yes	0	0	1	0	1	1	1					1			35.326	35.326	3	0.010097	7963	20190821_JH_MUT_Ubi	70.281	29.4	3989600	1389000	818020	0	0	0	0	1782600	0	0			503	2065	429	1384;1385;1386	1475;1476;1477	1476		1947		2
DEGSYDLGKK	GlyGly (K)	1224.5622	0.5622457	742	sp|P31431|SDC4_HUMAN	yes	yes	0	0	1	0	1								1		21.833	21.833	2	0.0040679	5603	20190902_JH_WT_Ubi_2	105.4	35.585	2294500	0	0	0	0	0	0	0	2294500	0			504	742	430	1387	1478	1478		716		1
DEGSYSLEEPKQANGGAYQK	GlyGly (K);Deamidation (NQ)	2285.0084	0.0083990195	614	sp|P18827|SDC1_HUMAN	yes	yes	0	1	1	0	1	1	1						1		29.381	29.381	3	0.00046449	8214	20190902_JH_WT_Ubi_2	106.31	78.244	5188500	1696500	860170	0	0	0	0	0	2631900	0			505	614	431	1388;1389;1390	1479;1480;1481	1481	222;868;869	598		3
DEILPTTPISEQK	Unmodified	1469.7613	0.76133944	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	0	0	0			1							38.417	38.417	2	0.016401	9276	20190821_JH_WT_Ubi	72.531	25.925	11454000	0	0	11454000	0	0	0	0	0	0			506	662	432	1391	1482	1482				1
DEKGMPVTAR	Oxidation (M);GlyGly (K)	1232.5819	0.58193529	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	0	1	1	1	1	1								17.061	17.061	3	0.01953	2865	20190821_JH_EV_Ubi	82.261	29.682	2189000	1300300	888770	0	0	0	0	0	0	0			507	720	433	1392;1393	1483;1484	1483		703	450	2
DEKNQELRWMEAAR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1906.8479	0.84793939	392	sp|P02730-2|B3AT_HUMAN	yes	yes	0	2	1	1	2			1							58.657	58.657	2	0.036815	16463	20190821_JH_WT_Ubi	44.425	14.891	0	0	0	0	0	0	0	0	0	0			508	392	434	1394	1485	1485	126			1
DELADEIANSSGK	Unmodified	1347.6154	0.61540349	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0									1	33.971	33.971	2	0.011041	9417	20190902_JH_WT_Ubi_3	78.548	42.604	6734700	0	0	0	0	0	0	0	0	6734700			509	776	435	1395	1486	1486				0
DELFALEQSCAQVVLQAANER	Unmodified	2390.1536	0.15362347	1382	sp|Q16658|FSCN1_HUMAN	yes	yes	0	0	0	0	0									1	53.368	53.368	3	0.0018025	15421	20190902_JH_WT_Ubi_3	67.579	33.485	584170	0	0	0	0	0	0	0	0	584170			510	1382	436	1396	1487	1487				1
DELHIVEAEAMNYEGSPIK	Oxidation (M)	2160.0045	0.0044996155	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	1	0	1		1	1	1	1	1	1	1	42.09	42.09	3	1.379E-23	12156	20190902_JH_WT_Ubi_3	165.66	94.518	48242000	2987800	0	12632000	1917900	2920600	1679100	1054700	13067000	11983000			511	438	437	1397;1398;1399;1400;1401;1402;1403;1404	1488;1489;1490;1491;1492;1493;1494;1495	1495			233	8
DELHIVEAEAMNYEGSPIK	Unmodified	2144.0096	0.0095849934	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	44.565	44.565	3	8.2372E-19	13442	20190902_JH_WT_Ubi_2	157.7	96.056	37484000	2403700	0	23584000	0	0	0	0	7789600	3706700			512	438	437	1405;1406;1407;1408	1496;1497;1498;1499	1498				4
DELILEGNDIELVSNSAALIQQATTVK	Unmodified	2883.5077	0.50769752	757	sp|P32969|RL9_HUMAN	yes	yes	0	0	0	0	0			1							55.878	55.878	3	1.6205E-07	16021	20190821_JH_WT_Ubi	97.068	58.312	3887200	0	0	3887200	0	0	0	0	0	0			513	757	438	1409	1500	1500				1
DELILEGNDIELVSNSAALIQQATTVKNK	GlyGly (K);2 Deamidation (NQ)	3241.6565	0.65654661	757	sp|P32969|RL9_HUMAN	yes	yes	0	2	1	0	1						1				53.143	53.143	3	0.0081779	14875	20190902_JH_MUT_Ubi_2	56.562	27.408	0	0	0	0	0	0	0	0	0	0			514	757	439	1410	1501	1501	267;890;891	726;727		1
DELNADHPFIYIIR	Unmodified	1714.8679	0.8678702	790	sp|P36952|SPB5_HUMAN	yes	yes	0	0	0	0	0			1							44.708	44.708	3	2.3948E-05	11929	20190821_JH_WT_Ubi	124.48	83.202	7699100	0	0	7699100	0	0	0	0	0	0			515	790	440	1411	1502	1502				1
DELTDLDQSNVTEETPEGEEHHPVADTENK	Unmodified	3377.4655	0.46551095	1637	sp|Q8NC51-4|PAIRB_HUMAN;sp|Q8NC51-3|PAIRB_HUMAN	yes	no	0	0	0	0	0								1	2	32.865	32.865	3;4	4.0295E-11	9035	20190902_JH_WT_Ubi_3	104.77	80.703	16990000	0	0	0	0	0	0	0	7205900	9783800			516	1637	441	1412;1413;1414	1503;1504;1505	1505				3
DENNEEDAYPDNVHAAAEEKSAIQANDHHPR	GlyGly (K)	3599.5534	0.55337195	935	sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN	yes	no	0	0	1	0	1			1							27.454	27.454	5	0.0046548	5501	20190821_JH_WT_Ubi	45.558	30.512	21536000	0	0	21536000	0	0	0	0	0	0			517	935	442	1415	1506	1506		899		1
DENQSINHQMAQEDAQR	Oxidation (M)	2028.8555	0.85554397	626	sp|P20073-2|ANXA7_HUMAN;sp|P20073|ANXA7_HUMAN	yes	no	0	0	0	1	0								1		19.903	19.903	3	0.01851	4936	20190902_JH_WT_Ubi_2	60.158	37.355	1274500	0	0	0	0	0	0	0	1274500	0			518	626	443	1416	1507	1507			384	0
DEPCLLKR	GlyGly (K)	1143.5706	0.57064232	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	0	1		1								25.925	25.925	3	0.028869	4454	20190821_JH_MUT_Ubi	87.754	51.359	1622300	0	1622300	0	0	0	0	0	0	0			519	282	444	1417	1508	1508		272		1
DEQGACAVLAVHLNTLLGER	Unmodified	2165.0899	0.089901	807	sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN	yes	no	0	0	0	0	0			1							47.74	47.74	3	0.001162	13133	20190821_JH_WT_Ubi	73.11	43.218	5463800	0	0	5463800	0	0	0	0	0	0			520	807	445	1418	1509	1509				1
DEQGACAVLAVHLNTLLGERPVQHR	Unmodified	2782.4297	0.42967917	807	sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN	yes	no	0	0	0	0	1	1	1	1							40.98	40.98	4;5	0.0041902	10314	20190821_JH_WT_Ubi	51.044	29.429	32145000	2723400	2319700	27101000	0	0	0	0	0	0			521	807	446	1419;1420;1421	1510;1511;1512	1512				3
DEREDITHTYK	Unmodified	1405.6474	0.64737232	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	1			1					1		21.513	21.513	3	0.00163	3977	20190821_JH_WT_Ubi	132.56	96.854	75740000	0	0	25075000	0	0	0	0	50665000	0			522	645	447	1422;1423	1513;1514	1513				2
DESGFPKPPSYNVATTLPSYDEAER	GlyGly (K)	2883.3199	0.31989675	1871	sp|Q9BT67|NFIP1_HUMAN	yes	yes	0	0	1	0	1			1				1			41.948	41.948	3	0.0060732	10863	20190821_JH_WT_Ubi	53.381	25.858	2682200	0	0	1879900	0	0	0	802260	0	0			523	1871	448	1424;1425	1515;1516;1517	1517		1815		3
DESLKVDEHLAK	GlyGly (K)	1496.7471	0.74708636	535	sp|P12429|ANXA3_HUMAN	yes	yes	0	0	1	0	1		1				1	1			24.548	24.548	3	0.006312	5289	20190902_JH_MUT_Ubi_3	91.123	49.082	6169400	0	1147800	0	0	0	2634200	2387400	0	0			524	535	449	1426;1427;1428	1518;1519;1520	1520		530		3
DETEFYLGK	Unmodified	1100.5026	0.50260556	608	sp|P18077|RL35A_HUMAN	yes	yes	0	0	0	0	0								1		37.418	37.418	2	8.8587E-10	10982	20190902_JH_WT_Ubi_2	188.76	145.9	13399000	0	0	0	0	0	0	0	13399000	0			525	608	450	1429	1521	1521				0
DEVDGGPPCAPGGTAKTR	GlyGly (K)	1897.8588	0.85883843	2040	sp|Q9NV96-2|CC50A_HUMAN;sp|Q9NV96|CC50A_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1			23.74	23.74	3	0.00039836	4963	20190902_JH_EV_Ubi_2	90.725	63.396	30179000	4266100	3086200	4773700	2153600	6669400	4794400	4436000	0	0			526	2040	451	1430;1431;1432;1433;1434;1435;1436	1522;1523;1524;1525;1526;1527;1528;1529	1523		1935		8
DEVQEVVYFSAADHEPESK	Unmodified	2177.9753	0.97530798	1193	sp|Q12765|SCRN1_HUMAN;sp|Q12765-2|SCRN1_HUMAN	yes	no	0	0	0	0	0			1					1		38.782	38.782	3	0.011138	9400	20190821_JH_WT_Ubi	54.764	24.346	6152800	0	0	3021200	0	0	0	0	3131700	0			527	1193	452	1437;1438	1530;1531	1530				2
DFCVKFPEEIR	GlyGly (K)	1552.7344	0.73441319	1986	sp|Q9HCC9-8|LST2_HUMAN;sp|Q9HCC9-7|LST2_HUMAN;sp|Q9HCC9-6|LST2_HUMAN;sp|Q9HCC9-4|LST2_HUMAN;sp|Q9HCC9-3|LST2_HUMAN;sp|Q9HCC9-2|LST2_HUMAN;sp|Q9HCC9|LST2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.518	39.518	3	0.00024095	9820	20190902_JH_EV_Ubi_3	136.5	90.123	280770000	21124000	26362000	65572000	15434000	13584000	23389000	42881000	37918000	34510000			528	1986	453	1439;1440;1441;1442;1443;1444;1445;1446;1447	1532;1533;1534;1535;1536;1537;1538;1539;1540	1534		1910		9
DFETIGQNK	Unmodified	1050.4982	0.49818889	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN;sp|Q9NZM1-5|MYOF_HUMAN;sp|Q9NZM1-4|MYOF_HUMAN;sp|Q9NZM1-8|MYOF_HUMAN;sp|Q9NZM1-7|MYOF_HUMAN	yes	no	0	0	0	0	0								1		29.222	29.222	2	0.034417	8092	20190902_JH_WT_Ubi_2	54.722	11.853	1080700	0	0	0	0	0	0	0	1080700	0			529	2073	454	1448	1541	1541				0
DFFQSYGNVVELR	Unmodified	1572.7573	0.75725712	1228	sp|Q13283|G3BP1_HUMAN	yes	yes	0	0	0	0	0							1			48.167	48.167	2	0.002701	12752	20190902_JH_MUT_Ubi_3	99.752	43.393	403500	0	0	0	0	0	0	403500	0	0			530	1228	455	1449	1542	1542				1
DFHHHHFPDMEIFLR	Unmodified	1976.9104	0.91042049	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	0	0	0			1							38.754	38.754	4	0.021442	9427	20190821_JH_WT_Ubi	49.929	23.805	4197200	0	0	4197200	0	0	0	0	0	0			531	308	456	1450	1543	1543				1
DFHKDILK	GlyGly (K)	1128.5928	0.59275797	743	sp|P31641-2|SC6A6_HUMAN;sp|P31641|SC6A6_HUMAN	yes	no	0	0	1	0	1	1		1			1				24.201	24.201	3	0.025165	5358	20190902_JH_MUT_Ubi_2	84.916	35.474	2838200	501990	0	1553200	0	0	783010	0	0	0			532	743	457	1451;1452;1453	1544;1545;1546	1545		717		3
DFHVHCYR	Unmodified	1132.4872	0.48724704	1741	sp|Q93052|LPP_HUMAN	yes	yes	0	0	0	0	0			1							20.966	20.966	3	0.032327	3853	20190821_JH_WT_Ubi	64.207	43.43	6889500	0	0	6889500	0	0	0	0	0	0			533	1741	458	1454	1547	1547				1
DFIHTASISFLTPLR	Unmodified	1716.9199	0.91990577	2011	sp|Q9NR46|SHLB2_HUMAN;sp|Q9NR46-2|SHLB2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	49.808	49.808	3	1.4442E-11	13950	20190821_JH_WT_Ubi	156	57.848	25288000	0	3231500	9114700	0	0	3302500	1082200	3884400	4672300			534	2011	459	1455;1456;1457;1458;1459;1460	1548;1549;1550;1551;1552;1553	1551				6
DFLAGGIAAAISK	Unmodified	1232.6765	0.6764876	532	sp|P12236|ADT3_HUMAN	yes	yes	0	0	0	0	0	1									47.527	47.527	2	0.0014123	12886	20190821_JH_EV_Ubi	107.03	65.047	2269600	2269600	0	0	0	0	0	0	0	0			535	532	460	1461	1554	1554				1
DFLAGGVAAAISK	Unmodified	1218.6608	0.66083754	423	sp|P05141|ADT2_HUMAN	yes	yes	0	0	0	0	0								1	1	44.002	44.002	2	0.013365	13323	20190902_JH_WT_Ubi_2	73.951	12.978	78538000	0	0	0	0	0	0	0	38100000	40438000			536	423	461	1462;1463	1555;1556	1555				0
DFLKEFNNK	GlyGly (K)	1267.6197	0.619701	663	sp|P23458|JAK1_HUMAN	yes	yes	0	0	1	0	1		1			1	1	1	1	1	32.195	32.195	3	4.0219E-06	8052	20190902_JH_MUT_Ubi_2	149.57	65.69	24339000	0	1763900	0	0	2579900	3135200	2427900	5472400	8959600			537	663	462	1464;1465;1466;1467;1468;1469	1557;1558;1559;1560;1561;1562	1559		633		6
DFMIQGGDFTR	Oxidation (M);Deamidation (NQ)	1302.5551	0.55505184	660	sp|P23284|PPIB_HUMAN	yes	yes	0	1	0	1	0								1		40.201	40.201	2	0.031455	11859	20190902_JH_WT_Ubi_2	62.633	22.97	732130	0	0	0	0	0	0	0	732130	0			538	660	463	1470	1563	1563	879		411	0
DFMYVSQDPK	Oxidation (M)	1244.5383	0.53833914	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	1	0			1							31.046	31.046	2	0.027594	6608	20190821_JH_WT_Ubi	63.816	38.997	3473900	0	0	3473900	0	0	0	0	0	0			539	975	464	1471	1564	1564			608	0
DFNHINVELSLLGK	Unmodified	1597.8464	0.84640648	757	sp|P32969|RL9_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1		1	45.319	45.319	3	5.2154E-48	11742	20190821_JH_MUT_Ubi	214.42	155.26	47121000	7263500	7933300	20522000	0	0	3830700	4251500	0	3320000			540	757	465	1472;1473;1474;1475;1476;1477	1565;1566;1567;1568;1569;1570	1566				6
DFNMPLTISSLK	Unmodified	1364.701	0.70098779	1783	sp|Q96HC4-7|PDLI5_HUMAN;sp|Q96HC4-4|PDLI5_HUMAN;sp|Q96HC4|PDLI5_HUMAN;sp|Q96HC4-6|PDLI5_HUMAN;sp|Q96HC4-3|PDLI5_HUMAN;sp|Q96HC4-2|PDLI5_HUMAN	yes	no	0	0	0	0	0									1	48.795	48.795	2	0.029138	14325	20190902_JH_WT_Ubi_3	76.332	33.733	0	0	0	0	0	0	0	0	0	0			541	1783	466	1478	1571	1571				1
DFSALESQLQDTQELLQEENR	Unmodified	2492.1667	0.16669058	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0			1	1		1	1		1	53.974	53.974	3	7.8885E-85	15393	20190821_JH_WT_Ubi	224.12	164.75	6961800	0	0	0	537790	0	1060000	1349900	0	4014100			542	776	467	1479;1480;1481;1482;1483	1572;1573;1574;1575;1576	1575				5
DFSALESQLQDTQELLQEENR	2 Deamidation (NQ)	2494.1347	0.13472175	776	sp|P35579|MYH9_HUMAN	yes	yes	0	2	0	0	0									1	55.225	55.225	3	0.025655	15789	20190902_JH_WT_Ubi_3	50.232	26.505	0	0	0	0	0	0	0	0	0	0			543	776	467	1484	1577	1577	901;902			1
DFSHPNVLSLLGICLR	Unmodified	1839.9665	0.96653839	470	sp|P08581|MET_HUMAN;sp|P08581-2|MET_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	54.401	54.401	3	2.4691E-14	15561	20190821_JH_WT_Ubi	157.35	63.871	16381000	0	1095700	10391000	0	0	0	0	1687000	3207200			544	470	468	1485;1486;1487;1488	1578;1579;1580;1581	1579				4
DFTATDLSEFAAK	Unmodified	1414.6616	0.6616254	834	sp|P42765|THIM_HUMAN	yes	yes	0	0	0	0	0								1	1	44.926	44.926	2	1.3519E-06	13068	20190902_JH_WT_Ubi_3	138.76	78.596	3665500	0	0	0	0	0	0	0	2068200	1597300			545	834	469	1489;1490	1582;1583	1583				0
DFTVKNIQTSESHPLR	GlyGly (K)	1984.9967	0.99665254	1203	sp|Q12913|PTPRJ_HUMAN	yes	yes	0	0	1	0	1						1				29.454	29.454	3	0.033827	7146	20190902_JH_MUT_Ubi_2	49.216	22.568	1181800	0	0	0	0	0	1181800	0	0	0			546	1203	470	1491	1584	1584				1
DFTVSAMHGDMDQK	2 Oxidation (M)	1612.6498	0.64975686	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	0	2	0								1	1	24.101	24.101	3	0.0063142	6177	20190902_JH_WT_Ubi_3	75.819	45.614	9287800	0	0	0	0	0	0	0	4789900	4497900			547	1001	471	1492;1493	1585;1586	1586			625;626	2
DFTVSAMHGDMDQKER	2 Oxidation (M);GlyGly (K)	2011.8364	0.83638843	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	1	2	1	1	1		1	1	1	1		1	21.815	21.815	3	0.0074992	3460	20190821_JH_MUT_Ubi	63.037	42.184	8790300	936060	524850	0	1734800	1070600	1491100	1049900	0	1983000			548	1001	472	1494;1495;1496;1497;1498;1499;1500	1587;1588;1589;1590;1591;1592;1593	1590		988	625;626	7
DGADFAKWR	GlyGly (K)	1178.5469	0.54687041	400;498	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN;sp|P09972|ALDOC_HUMAN	no	no	0	0	1	0	1							1		1	29.854	29.854	3	0.018857	6954	20190902_JH_MUT_Ubi_3	77.318	33.51	1344700	0	0	0	0	0	0	438040	0	906660			549	400;498	473	1501;1502	1594;1595	1594		366		2
DGALHMIGSLAEILLK	Oxidation (M)	1695.9229	0.92294224	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	1	0	1			1	1	1	1	1	1	51.887	51.887	3	6.1772E-26	15087	20190902_JH_WT_Ubi_3	180.95	116.98	20897000	4334300	0	0	2179800	3577000	1893800	2438500	2422500	4051400			550	341	474	1503;1504;1505;1506;1507;1508;1509	1596;1597;1598;1599;1600;1601;1602	1602			158	7
DGALHMIGSLAEILLK	Unmodified	1679.928	0.92802762	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	0	0	1	1	1							55.328	55.328	3	1.4056E-25	14695	20190821_JH_EV_Ubi	177.21	103.58	6951700	1653500	2261500	3036700	0	0	0	0	0	0			551	341	474	1510;1511;1512	1603;1604;1605	1603				3
DGDGTITTKELGTVMR	Oxidation (M);GlyGly (K)	1822.8731	0.87309151	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	1	1	1	1	1		1	1	1	1	1	1	30.181	30.181	3	1.845E-25	7332	20190902_JH_MUT_Ubi_2	178.67	130.06	249090000	15463000	19396000	0	21748000	19173000	35238000	41782000	58864000	37428000			552	504	475	1513;1514;1515;1516;1517;1518;1519;1520	1606;1607;1608;1609;1610;1611;1612;1613	1610		494	289	8
DGDGTITTKELGTVMR	GlyGly (K)	1806.8782	0.87817689	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	1	34.975	34.975	3	1.6816E-32	8013	20190821_JH_WT_Ubi	184	134.69	105100000	0	12825000	17013000	2887100	3306300	15774000	23037000	14870000	15385000			553	504	475	1521;1522;1523;1524;1525;1526;1527;1528	1614;1615;1616;1617;1618;1619;1620;1621	1619		494		8
DGDSVMVLPTIPEEEAK	Oxidation (M)	1844.8714	0.87136018	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	0	0	1	0									1	42.924	42.924	2	0.00010337	12436	20190902_JH_WT_Ubi_3	111.79	57.307	10330000	0	0	0	0	0	0	0	0	10330000			554	720	476	1529	1622	1622			451	1
DGDSVMVLPTIPEEEAKK	Oxidation (M);GlyGly (K)	2087.0093	0.0092506424	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	0	1	1	1					1			1		37.206	37.206	3	0.021387	9105	20190902_JH_EV_Ubi_3	55.975	18.537	1687000	0	0	0	0	0	0	0	1687000	0			555	720	477	1530;1531	1623;1624	1623		704;705	451	2
DGGAWGTEQR	Unmodified	1075.4683	0.46828574	486	sp|P09382|LEG1_HUMAN	yes	yes	0	0	0	0	0					1					24.561	24.561	2	0.014333	5278	20190902_JH_EV_Ubi_3	119.75	66.961	1976500	0	0	0	0	1976500	0	0	0	0			556	486	478	1532	1625	1625				0
DGHNLISLLEVLSGDSLPR	Unmodified	2034.0746	0.074568512	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0		1	1					1		56.095	56.095	3	6.103E-07	16045	20190821_JH_WT_Ubi	120.9	81.867	15435000	0	4771400	6580500	0	0	0	0	4083200	0			557	1332	479	1533;1534;1535	1626;1627;1628	1627				3
DGHPVVVNILIGR	Unmodified	1387.7936	0.79358305	70	sp|A1L0T0|ILVBL_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1				1	40.804	40.804	3	0.0010859	10552	20190821_JH_EV_Ubi	104.87	60.302	14470000	3867500	1045100	4969600	1332400	1187800	0	0	0	2067500			558	70	480	1536;1537;1538;1539;1540;1541	1629;1630;1631;1632;1633;1634	1629				6
DGKDQGVNVR	GlyGly (K)	1200.5847	0.58471248	2260	sp|Q9Y6I3-3|EPN1_HUMAN;sp|Q9Y6I3|EPN1_HUMAN;sp|Q9Y6I3-1|EPN1_HUMAN;sp|Q9H201-2|EPN3_HUMAN;sp|Q9H201|EPN3_HUMAN	yes	no	0	0	1	0	1				1		1				17.366	17.366	3	0.011935	3876	20190902_JH_MUT_Ubi_2	89.029	54.642	4750900	0	0	0	3276300	0	1474600	0	0	0			559	2260	481	1542;1543	1635;1636	1636		2093		2
DGKLVSESSDVLPK	GlyGly (K)	1586.8152	0.81516593	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN	yes	no	0	0	1	0	1		1			1	1	1			31.005	31.005	3	1.5072E-05	7247	20190902_JH_MUT_Ubi_3	130.47	79.005	13732000	0	3175000	0	0	1670000	5215600	3671700	0	0		+	560	6	482	1544;1545;1546;1547	1637;1638;1639;1640	1640		10		4
DGLAFNALIHR	Unmodified	1225.6568	0.65675521	214	sp|O43707|ACTN4_HUMAN;sp|Q9H254-2|SPTN4_HUMAN;sp|Q9H254-4|SPTN4_HUMAN;sp|Q9H254|SPTN4_HUMAN	yes	no	0	0	0	0	0	1	2	2	1	1	2	2	2	2	40.579	40.579	3	1.3068E-06	9864	20190821_JH_WT_Ubi	149.33	95.581	264140000	13386000	24457000	58685000	13097000	9351600	37160000	29033000	39038000	39928000			561	214	483	1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562	1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655	1650				15
DGLCSKTVEYHR	GlyGly (K)	1577.7256	0.72563941	1638	sp|Q8NC54|KCT2_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1		1		1	22.799	22.799	3	9.0528E-11	4090	20190821_JH_EV_Ubi	132.56	78.04	39650000	0	3682900	12575000	0	0	0	7746800	0	15645000			562	1638	484	1563;1564;1565;1566;1567;1568	1656;1657;1658;1659;1660;1661	1656		1638		6
DGLGFCALIHR	Unmodified	1257.6288	0.6288259	537	sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1	1	1	1	40.252	40.252	2;3	0.00014775	11528	20190902_JH_WT_Ubi_3	137.95	94.183	100270000	6782900	14904000	27896000	0	3970700	12971000	13443000	5829300	14473000			563	537	485	1569;1570;1571;1572;1573;1574;1575;1576	1662;1663;1664;1665;1666;1667;1668;1669	1669				7
DGLITPTIAPNGAQVLQVKR	GlyGly (K);Deamidation (NQ)	2205.2117	0.2117307	1546	sp|Q86TG7|PEG10_HUMAN	yes	yes	0	1	1	0	1	1	1		1	1			1		42.816	42.816	3	0.00067203	10747	20190821_JH_MUT_Ubi	80.975	49.934	42808000	12907000	16654000	0	8810200	1006800	0	0	3429400	0			564	1546	486	1577;1578;1579;1580;1581	1670;1671;1672;1673;1674	1673	495;1109;1110	1540		5
DGMAFNALIHK	Oxidation (M)	1231.6019	0.60194245	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	1	0			1	1		1	1	1	1	32.127	32.127	3	0.0071896	8050	20190902_JH_MUT_Ubi_2	91.549	63.725	15217000	0	0	1627100	1891000	0	1562100	2662800	3425700	4047900			565	1129;1130	487	1582;1583;1584;1585;1586;1587	1675;1676;1677;1678;1679;1680	1676			702	6
DGMAFNALIHK	Unmodified	1215.607	0.60702783	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0			1			1	1	1	1	36.693	36.693	3	0.017601	9909	20190902_JH_MUT_Ubi_2	68.626	30.631	5529800	0	0	1651800	0	0	1225200	713590	0	1939300			566	1129;1130	487	1588;1589;1590;1591;1592	1681;1682;1683;1684;1685	1681				5
DGNASGTTLLEALDCILPPTRPTDK	Unmodified	2654.3221	0.32214536	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	0	1	1	1	1		1			1	1	53.782	53.782	3	8.4778E-43	15293	20190821_JH_WT_Ubi	174.91	130.37	207660000	16237000	9869300	94532000	0	6086000	0	0	28025000	52907000			567	1096	488	1593;1594;1595;1596;1597;1598	1686;1687;1688;1689;1690;1691;1692	1689				7
DGNASGTTLLEALDCILPPTRPTDK	Deamidation (NQ)	2655.3062	0.30616094	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	1	0	0	1			1							54.325	54.325	3	7.3593E-06	15574	20190821_JH_WT_Ubi	88.555	64.049	5804400	0	0	5804400	0	0	0	0	0	0			568	1096	488	1599	1693	1693	356			1
DGQERPTILK	GlyGly (K)	1269.6677	0.66771383	313	sp|O76082-3|S22A5_HUMAN;sp|O76082|S22A5_HUMAN;sp|O76082-2|S22A5_HUMAN	yes	no	0	0	1	0	1	1			1	1					24.676	24.676	3	0.00064905	4637	20190821_JH_EV_Ubi	134.25	66.913	8498500	2254700	0	0	3224700	3019000	0	0	0	0			569	313	489	1600;1601;1602	1694;1695;1696	1694		296		3
DGQERPTILKSTAF	GlyGly (K)	1675.8529	0.85294842	313	sp|O76082-3|S22A5_HUMAN;sp|O76082|S22A5_HUMAN;sp|O76082-2|S22A5_HUMAN	yes	no	0	0	1	0	2	1	1	1	1	1	1	1	1	1	34.395	34.395	3	4.3446E-14	8301	20190902_JH_EV_Ubi_3	145.83	85.672	76769000	7523400	6200600	9380800	7862700	0	10430000	12267000	10685000	12419000			570	313	490	1603;1604;1605;1606;1607;1608;1609;1610;1611	1697;1698;1699;1700;1701;1702;1703;1704;1705	1699		296		9
DGQLTDDEMFSNEIGSEPFQK	Oxidation (M);2 Deamidation (NQ)	2403.99	0.99003134	1451	sp|Q5VVW2-3|GARL3_HUMAN;sp|Q5VVW2-2|GARL3_HUMAN;sp|Q5VVW2-5|GARL3_HUMAN;sp|Q5VVW2|GARL3_HUMAN	yes	no	0	2	0	1	0									2	26.714	26.714	3	0.003582	6991	20190902_JH_WT_Ubi_3	71.376	47.333	0	0	0	0	0	0	0	0	0	0			571	1451	491	1612;1613	1706;1707	1706	459;1076		887	2
DGQVINETSQHHDDLE	Unmodified	1835.7922	0.79219865	474	sp|P08670|VIME_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	26.418	26.418	3	0.0037668	7150	20190902_JH_WT_Ubi_2	73.386	50.395	35421000	0	1271400	9498900	0	0	0	0	13843000	10808000			572	474	492	1614;1615;1616;1617	1708;1709;1710;1711	1710				4
DGSADTKPTQVDTSR	GlyGly (K)	1690.7758	0.77582031	1494	sp|Q6UXK5|LRRN1_HUMAN	yes	yes	0	0	1	0	1	1		1	1	1					20.653	20.653	3	6.7292E-05	4264	20190902_JH_EV_Ubi_3	117.48	86.33	15921000	5167000	0	1616400	5746900	3391000	0	0	0	0			573	1494	493	1618;1619;1620;1621	1712;1713;1714;1715;1716	1714		1502		5
DGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFR	Unmodified	3529.5885	0.58848382	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1					1		52.239	52.239	3	4.2921E-13	14726	20190821_JH_WT_Ubi	107.34	76.455	7396100	0	0	4126200	0	0	0	0	3269900	0			574	282	494	1622;1623	1717;1718;1719	1717				3
DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK	Unmodified	3578.63	0.63001428	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0								1		48.083	48.083	3	0.0012623	14447	20190902_JH_WT_Ubi_2	49.94	19.754	1301300	0	0	0	0	0	0	0	1301300	0			575	637	495	1624	1720	1720				1
DGSDEPGTAACPNGSFHCTNTGYK	Deamidation (NQ)	2542.9965	0.99653048	552	sp|P14314-2|GLU2B_HUMAN;sp|P14314|GLU2B_HUMAN	yes	no	0	1	0	0	0									1	28.627	28.627	3	0.0061791	7612	20190902_JH_WT_Ubi_3	60.454	37.124	2868600	0	0	0	0	0	0	0	0	2868600			576	552	496	1625	1721	1721	207			1
DGSELILHFVTQCNTR	Unmodified	1888.9101	0.91014572	276	sp|O75208|COQ9_HUMAN	yes	yes	0	0	0	0	0			1							44.947	44.947	3	0.019066	12012	20190821_JH_WT_Ubi	53.008	14.497	1455200	0	0	1455200	0	0	0	0	0	0			577	276	497	1626	1722	1722				1
DGSGINYSAVHSFK	GlyGly (K)	1594.7376	0.73758431	1648	sp|Q8NEL9-4|DDHD1_HUMAN	yes	yes	0	0	1	0	0						1				32.466	32.466	2	0.0078757	8218	20190902_JH_MUT_Ubi_2	81.017	29.571	0	0	0	0	0	0	0	0	0	0			578	1648	498	1627	1723	1723		1648		1
DGSLASNPYSGDLTK	Unmodified	1523.7104	0.71036651	1281	sp|Q14157-4|UBP2L_HUMAN;sp|Q14157-1|UBP2L_HUMAN;sp|Q14157-3|UBP2L_HUMAN;sp|Q14157|UBP2L_HUMAN;sp|Q14157-5|UBP2L_HUMAN	yes	no	0	0	0	0	0			1							34.702	34.702	2	0.023173	7894	20190821_JH_WT_Ubi	48.467	2.0098	1136500	0	0	1136500	0	0	0	0	0	0			579	1281	499	1628	1724	1724				0
DGSQKVSQPSAEVWNENK	2 GlyGly (K);3 Deamidation (NQ)	2232.9771	0.97709889	1674	sp|Q8TC56|FA71B_HUMAN	yes	yes	0	3	2	0	1		1								34.708	34.708	3	0.035951	7657	20190821_JH_MUT_Ubi	42.813	10.632	1038400	0	1038400	0	0	0	0	0	0	0			580	1674	500	1629	1725	1725	545;546			1
DGTCTVTYLPTLPGDYSILVK	Unmodified	2312.161	0.16100026	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0		1	1						1	54.063	54.063	3	0.0053416	15583	20190902_JH_WT_Ubi_3	59.372	27.22	6263900	0	1122900	3691900	0	0	0	0	0	1449100			581	282	501	1630;1631;1632	1726;1727;1728	1728				3
DGTVLCELINALYPEGQAPVK	Unmodified	2286.1566	0.15658358	796	sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN	yes	no	0	0	0	0	0	1	1	1					1	1	57.162	57.162	3	7.8571E-46	16232	20190821_JH_WT_Ubi	191.47	135.92	12643000	748760	940970	6474900	0	0	0	0	1465800	3012400			582	796	502	1633;1634;1635;1636;1637	1729;1730;1731;1732;1733;1734;1735;1736	1732				8
DGTVTAGNASGVADGAGAVIIASEDAVK	Unmodified	2515.2402	0.24018987	834	sp|P42765|THIM_HUMAN	yes	yes	0	0	0	0	0									1	46.803	46.803	3	5.5268E-06	13779	20190902_JH_WT_Ubi_3	86.131	54.773	1102300	0	0	0	0	0	0	0	0	1102300			583	834	503	1638	1737	1737				1
DGVADVSIEDSVISLSGDHCIIGR	Unmodified	2513.2068	0.20678125	378	sp|P00441|SODC_HUMAN	yes	yes	0	0	0	0	0			1							48.964	48.964	3	7.6409E-05	13612	20190821_JH_WT_Ubi	82.586	50.785	5356300	0	0	5356300	0	0	0	0	0	0			584	378	504	1639	1738	1738				1
DGVYFLYEALHGPPK	Unmodified	1704.8512	0.8511575	734	sp|P30520|PURA2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	47.132	47.132	3	1.1437E-07	12884	20190821_JH_WT_Ubi	137.09	115.04	13421000	0	0	6708300	0	0	0	0	2969000	3743700			585	734	505	1640;1641;1642	1739;1740;1741	1739				3
DGVYVLDLAAK	Unmodified	1162.6234	0.6233894	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN	yes	no	0	0	0	0	0						1				44.452	44.452	2	0.032397	12845	20190902_JH_MUT_Ubi_2	66.19	23.591	746280	0	0	0	0	0	746280	0	0	0			586	946	506	1643	1742	1742				1
DGYNYTLSK	Unmodified	1059.4873	0.48728985	751	sp|P31949|S10AB_HUMAN	yes	yes	0	0	0	0	0									1	29.653	29.653	2	0.018126	7938	20190902_JH_WT_Ubi_3	103.88	63.193	96971000	0	0	0	0	0	0	0	0	96971000			587	751	507	1644	1743	1743				0
DHADSNIVIMLVGNK	Unmodified	1624.8243	0.82429083	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN;sp|P62491-2|RB11A_HUMAN;sp|P62491|RB11A_HUMAN	yes	no	0	0	0	0	0			1	1		1	1	1	1	43.39	43.39	3	1.083E-07	11422	20190821_JH_WT_Ubi	137.62	83.602	14443000	0	0	6665800	668450	0	749360	654080	2713700	2991800			588	1370	508	1645;1646;1647;1648;1649;1650	1744;1745;1746;1747;1748;1749	1747				6
DHADSNIVIMLVGNK	Oxidation (M)	1640.8192	0.81920545	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN;sp|P62491-2|RB11A_HUMAN;sp|P62491|RB11A_HUMAN	yes	no	0	0	0	1	0			1		1				1	39.251	39.251	3	2.7916E-07	11209	20190902_JH_WT_Ubi_3	135.04	69.764	9125500	0	0	4220500	0	1261100	0	0	0	3643900			589	1370	508	1651;1652;1653	1750;1751;1752;1753	1753			851	4
DHALLEEQSK	Unmodified	1168.5724	0.57241646	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	0	0								1		22.029	22.029	3	0.016172	5677	20190902_JH_WT_Ubi_2	72.434	24.15	6208500	0	0	0	0	0	0	0	6208500	0			590	214	509	1654	1754	1754				1
DHASIQMNVAEVDK	Oxidation (M)	1571.725	0.72497071	1083	sp|P63220|RS21_HUMAN	yes	yes	0	0	0	1	0	1		1		1			1		25.593	25.593	3	0.00097546	5030	20190821_JH_WT_Ubi	102.5	66.221	14547000	1068500	0	4010400	0	1655600	0	0	7812100	0			591	1083	510	1655;1656;1657;1658	1755;1756;1757;1758	1757			667	3
DHAVVVGVYRPPPK	Unmodified	1532.8463	0.8463469	647	sp|P22087|FBRL_HUMAN	yes	yes	0	0	0	0	1	1	1	1	1	1	1	1	1	1	25.946	25.946	3	1.4253E-10	5050	20190821_JH_EV_Ubi	157.03	117.45	176830000	9927700	4984800	25589000	22870000	12210000	8707700	7929000	42979000	41632000			592	647	511	1659;1660;1661;1662;1663;1664;1665;1666;1667	1759;1760;1761;1762;1763;1764;1765;1766;1767;1768	1759				9
DHGGALGPEEFK	Unmodified	1255.5833	0.5833155	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	0	0			1		1			1	1	27.796	27.796	3	0.0036851	7328	20190902_JH_WT_Ubi_3	94.465	59.027	18505000	0	0	3732400	0	1285200	0	0	6094200	7392900			593	214	512	1668;1669;1670;1671	1769;1770;1771;1772	1772				4
DHGVNSFLVYMAFK	Oxidation (M)	1642.7814	0.78136338	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	1	0			1					1	1	42.347	42.347	3	0.0019618	12205	20190902_JH_WT_Ubi_3	92.781	46.499	17325000	0	0	4318800	0	0	0	0	7494000	5512200			594	1376	513	1672;1673;1674	1773;1774;1775	1775			854	3
DHGVNSFLVYMAFK	Unmodified	1626.7864	0.78644876	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	0	0			1							47.843	47.843	3	0.00023735	13181	20190821_JH_WT_Ubi	110.15	76.85	4927000	0	0	4927000	0	0	0	0	0	0			595	1376	513	1675	1776	1776				1
DHHTADLCR	Unmodified	1123.4829	0.48288995	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0			1						1	11.274	11.274	3	0.00060111	2362	20190821_JH_WT_Ubi	134.77	99.147	78885000	0	0	32781000	0	0	0	0	0	46103000			596	645	514	1676;1677	1777;1778	1777				2
DHINLPGFSGQNPLR	Unmodified	1663.8431	0.84305243	379	sp|P00491|PNPH_HUMAN	yes	yes	0	0	0	0	0					1					39.199	39.199	3	0.00061148	9821	20190902_JH_EV_Ubi_3	100.18	69.7	1845800	0	0	0	0	1845800	0	0	0	0			597	379	515	1678	1779	1779				1
DHLLSVSLSGYINYLDR	Unmodified	1964.0003	0.0003409361	268	sp|O75083|WDR1_HUMAN;sp|O75083-3|WDR1_HUMAN	yes	no	0	0	0	0	0		1	1							49.484	49.484	3	7.9598E-05	13742	20190821_JH_WT_Ubi	107.82	69.598	5909600	0	2535800	3373800	0	0	0	0	0	0			598	268	516	1679;1680	1780;1781	1781				2
DHLVPDPGCHYDQLIEINLSELK	Unmodified	2704.3167	0.31666605	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0			1							47.054	47.054	4	0.00027481	12885	20190821_JH_WT_Ubi	74.657	45.844	3633800	0	0	3633800	0	0	0	0	0	0			599	1847	517	1681	1782	1782				1
DHLVTAYNHLFETK	Unmodified	1686.8366	0.83657007	1125	sp|Q00688|FKBP3_HUMAN	yes	yes	0	0	0	0	0	1			1				1	1	33.802	33.802	3	7.1662E-06	8017	20190821_JH_EV_Ubi	132.06	70.949	35464000	5986900	0	0	3350200	0	0	0	10755000	15372000			600	1125	518	1682;1683;1684;1685	1783;1784;1785;1786	1783				4
DHPAVAATLNNLAVLYGK	Unmodified	1865.9999	0.99994701	1179	sp|Q9H0B6-2|KLC2_HUMAN;sp|Q07866-8|KLC1_HUMAN;sp|Q07866-2|KLC1_HUMAN;sp|Q07866-3|KLC1_HUMAN;sp|Q07866|KLC1_HUMAN;sp|Q07866-7|KLC1_HUMAN;sp|Q07866-5|KLC1_HUMAN;sp|Q07866-10|KLC1_HUMAN;sp|Q9H0B6|KLC2_HUMAN;sp|Q07866-6|KLC1_HUMAN;sp|Q07866-4|KLC1_HUMAN;sp|Q07866-9|KLC1_HUMAN	yes	no	0	0	0	0	0						1				44.487	44.487	3	0.03719	12876	20190902_JH_MUT_Ubi_2	37.645	3.2501	446850	0	0	0	0	0	446850	0	0	0			601	1179	519	1686	1787	1787				1
DHPFGFVAVPTK	Unmodified	1313.6768	0.67682195	1088	sp|P63279|UBC9_HUMAN	yes	yes	0	0	0	0	0									1	36.946	36.946	3	0.027038	10488	20190902_JH_WT_Ubi_3	57.802	23.926	4338000	0	0	0	0	0	0	0	0	4338000			602	1088	520	1687	1788	1788				1
DHPLPEVAHVK	Unmodified	1240.6564	0.65642086	543	sp|P13073|COX41_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	23.505	23.505	3	1.5784E-06	6204	20190902_JH_WT_Ubi_2	147.3	116.02	37847000	1565500	0	6348000	2584600	1287600	0	0	17288000	8773300			603	543	521	1688;1689;1690;1691;1692;1693	1789;1790;1791;1792;1793;1794	1793				6
DHSPCYGYQWLSEEHQDAYHSANLVFSR	Unmodified	3395.469	0.46903738	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	0	0			1							40.051	40.051	4	0.00023129	9976	20190821_JH_WT_Ubi	66.017	42.963	3586600	0	0	3586600	0	0	0	0	0	0		+	604	0	522	1694	1795	1795				1
DHVLHVTFPK	Unmodified	1191.64	0.64004252	345	sp|O95453-4|PARN_HUMAN;sp|O95453-2|PARN_HUMAN;sp|O95453-3|PARN_HUMAN;sp|O95453|PARN_HUMAN	yes	no	0	0	0	0	0	1		1	1	1		1	1	1	28.735	28.735	3	0.0050238	6095	20190821_JH_EV_Ubi	96.143	53.279	16475000	2579100	0	3425800	2055100	2871300	0	1082800	4460300	0			605	345	523	1695;1696;1697;1698;1699;1700;1701	1796;1797;1798;1799;1800;1801;1802	1796				7
DHVYLQLHHLPPEQLATR	Unmodified	2166.1334	0.13342079	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN;sp|P31040-3|SDHA_HUMAN	yes	no	0	0	0	0	0	1		1						1	32.179	32.179	3	6.2225E-06	7022	20190821_JH_WT_Ubi	112.12	72.272	4121000	0	0	2369800	0	0	0	0	0	1751200			606	739	524	1702;1703;1704	1803;1804;1805;1806	1804				4
DHYIPNTLNPVFGR	Unmodified	1641.8263	0.82633974	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN	yes	no	0	0	0	0	0	1									39.798	39.798	3	0.0090913	10113	20190821_JH_EV_Ubi	70.563	13.389	1099000	1099000	0	0	0	0	0	0	0	0			607	2073	525	1705	1807	1807				1
DIAQQLQATCTSLGSSIQGLPTNVK	Unmodified	2629.3381	0.33812978	254	sp|O60664-4|PLIN3_HUMAN;sp|O60664-3|PLIN3_HUMAN;sp|O60664|PLIN3_HUMAN;sp|O60664-2|PLIN3_HUMAN	yes	no	0	0	0	0	0			1					1	1	49.594	49.594	3	5.2181E-34	13807	20190821_JH_WT_Ubi	161.41	124.98	18303000	0	0	9323500	0	0	0	0	3145000	5834900			608	254	526	1706;1707;1708	1808;1809;1810;1811	1808				4
DIAQQLQATCTSLGSSIQGLPTNVKDQVQQAR	GlyGly (K)	3568.7904	0.79037152	254	sp|O60664-4|PLIN3_HUMAN;sp|O60664-3|PLIN3_HUMAN;sp|O60664|PLIN3_HUMAN;sp|O60664-2|PLIN3_HUMAN	yes	no	0	0	1	0	1			1							46.75	46.75	3	4.5542E-27	12729	20190821_JH_WT_Ubi	144.43	126.22	8553600	0	0	8553600	0	0	0	0	0	0			609	254	527	1709	1812	1812		228		1
DICNDVLSLLEKFLIPNASQAESK	GlyGly (K);Deamidation (NQ)	2818.4059	0.40587499	1078	sp|P63104|1433Z_HUMAN	yes	yes	0	1	1	0	1		1								59.146	59.146	3	0.013079	15296	20190821_JH_MUT_Ubi	58.952	18.571	0	0	0	0	0	0	0	0	0	0			610	1078	528	1710	1813	1813	350	1068		1
DIFSKVENMK	Oxidation (M);GlyGly (K)	1339.6442	0.6442012	48		yes	no	0	0	1	1	1	1									21.95	21.95	3	0.01488	3826	20190821_JH_EV_Ubi	88.948	27.595	6845300	6845300	0	0	0	0	0	0	0	0	+		611	48	529	1711	1814	1814		52	32	1
DIGAIAQVHAENGDIIAEEQQR	Deamidation (NQ)	2377.151	0.15098093	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	1	0	0	0			1							39.805	39.805	3	1.2437E-36	9850	20190821_JH_WT_Ubi	179.41	137.88	6787400	0	0	6787400	0	0	0	0	0	0			612	1376	530	1712	1815	1815	439			1
DIHFMPCSGLTGANLK	Unmodified	1759.8386	0.83856068	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|P15170|ERF3A_HUMAN	yes	no	0	0	0	0	0								1		39.928	39.928	3	0.029708	11811	20190902_JH_WT_Ubi_2	45.54	0	972990	0	0	0	0	0	0	0	972990	0			613	566	531	1713	1816	1816				1
DIIHNPQALSPQFTGILQLLQSR	Unmodified	2588.4075	0.40747039	1467	sp|Q68E01-3|INT3_HUMAN;sp|Q68E01-2|INT3_HUMAN;sp|Q68E01|INT3_HUMAN	yes	no	0	0	0	0	0	1	1								54.834	54.834	3	2.2191E-22	14589	20190821_JH_EV_Ubi	151.22	120.88	6401700	2849100	3552600	0	0	0	0	0	0	0			614	1467	532	1714;1715	1817;1818;1819	1817				3
DIKDTTVGTLSQR	GlyGly (K)	1546.7951	0.79509919	924	sp|P51665|PSMD7_HUMAN	yes	yes	0	0	1	0	1								1		29.978	29.978	3	0.01119	8350	20190902_JH_WT_Ubi_2	75.088	40.602	5133300	0	0	0	0	0	0	0	5133300	0			615	924	533	1716	1820	1820		888		1
DILDHLPAEVQEDYGQDYILAQR	Unmodified	2700.3031	0.30312448	793	sp|P37059|DHB2_HUMAN	yes	yes	0	0	0	0	0			1							49.219	49.219	3	4.981E-37	13692	20190821_JH_WT_Ubi	176.39	134.87	4387200	0	0	4387200	0	0	0	0	0	0			616	793	534	1717	1821	1821				1
DILIQYDR	Unmodified	1034.5397	0.53965977	1042	sp|P62249|RS16_HUMAN	yes	yes	0	0	0	0	0								1		37.374	37.374	2	0.0019927	10963	20190902_JH_WT_Ubi_2	98.033	45.551	0	0	0	0	0	0	0	0	0	0			617	1042	535	1718	1822	1822				1
DILKEMFPYEASTPTGISASCR	Oxidation (M);GlyGly (K)	2602.2043	0.20433841	826	sp|P42167-2|LAP2B_HUMAN;sp|P42167|LAP2B_HUMAN	yes	no	0	0	1	1	1		1		1		1	1	1	1	40.338	40.338	3	1.515E-08	9786	20190821_JH_MUT_Ubi	116.94	78.525	15321000	0	2321800	0	1169400	0	3880400	3315700	2664100	1970100			618	826	536	1719;1720;1721;1722;1723;1724	1823;1824;1825;1826;1827;1828;1829	1824		797	525	7
DILKEMFPYEASTPTGISASCR	GlyGly (K)	2586.2094	0.20942379	826	sp|P42167-2|LAP2B_HUMAN;sp|P42167|LAP2B_HUMAN	yes	no	0	0	1	0	1						1				45.757	45.757	3	9.313E-06	13317	20190902_JH_MUT_Ubi_2	91.276	53.277	1056100	0	0	0	0	0	1056100	0	0	0			619	826	536	1725	1830	1830		797		1
DILPTPTVVHFK	Unmodified	1365.7656	0.76563696	1600	sp|Q8IZW8|TENS4_HUMAN	yes	yes	0	0	0	0	0								1		40.566	40.566	3	0.035721	12042	20190902_JH_WT_Ubi_2	51.013	7.5009	1568700	0	0	0	0	0	0	0	1568700	0			620	1600	537	1726	1831	1831				1
DINAYNCEEPTEK	Deamidation (NQ)	1582.6457	0.64571734	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	1	0	0	0			1							28.703	28.703	2	2.0099E-07	5887	20190821_JH_WT_Ubi	150.51	92.922	1543200	0	0	1543200	0	0	0	0	0	0			621	720	538	1727	1832	1832	256			1
DINAYNCEEPTEKLPFPIIDDR	GlyGly (K)	2762.2858	0.28575985	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	0	1	0	1		1	1	1			1		1	46.855	46.855	3	1.6833E-06	12840	20190821_JH_WT_Ubi	98.76	60.876	20655000	0	4338600	7280000	709240	0	0	3096100	0	5230700			622	720	539	1728;1729;1730;1731;1732	1833;1834;1835;1836;1837	1836		706		5
DINELNLPKTCDISFSDPDDLLNFK	GlyGly (K);Deamidation (NQ)	3037.4226	0.42264727	1011	sp|P61081|UBC12_HUMAN	yes	yes	0	1	1	0	1									1	52.677	52.677	3	0.0027061	15271	20190902_JH_WT_Ubi_3	69.27	30.337	0	0	0	0	0	0	0	0	0	0			623	1011	540	1733	1838	1838	331	999		1
DINQEVYNFLATAGAK	Unmodified	1752.8683	0.86826413	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0	1		1						1	54.118	54.118	2;3	3.4497E-05	14456	20190821_JH_EV_Ubi	115.91	77.276	5135000	592080	0	3113400	0	0	0	0	0	1429500			624	1847	541	1734;1735;1736	1839;1840;1841	1839				3
DISEASVFDAYVLPKLYVK	GlyGly (K)	2270.1835	0.18345026	1064	sp|P62854|RS26_HUMAN	yes	yes	0	0	1	0	1			1			1		1		51.988	51.988	3	3.6707E-05	15572	20190902_JH_WT_Ubi_2	106.6	60.439	5610800	0	0	3281400	0	0	812540	0	1516900	0			625	1064	542	1737;1738;1739	1842;1843;1844	1844		1042;1043		3
DISTTLNADEAVAR	Unmodified	1474.7264	0.72635092	356	sp|Q92598-2|HS105_HUMAN;sp|Q92598-3|HS105_HUMAN;sp|O95757|HS74L_HUMAN;sp|Q92598|HS105_HUMAN;sp|Q92598-4|HS105_HUMAN	yes	no	0	0	0	0	0									1	36.625	36.625	2	0.0083256	10392	20190902_JH_WT_Ubi_3	80.737	35.984	1973500	0	0	0	0	0	0	0	0	1973500			626	356	543	1740	1845	1845				0
DITPLQVVLPNTALHLK	Unmodified	1871.088	0.088033731	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1	1	1	48.566	48.566	3	0.0083281	13482	20190821_JH_WT_Ubi	62.055	43.876	56394000	3203200	6610800	15291000	0	1899000	6429100	5744300	7009900	10207000			627	1306	544	1741;1742;1743;1744;1745;1746;1747;1748	1846;1847;1848;1849;1850;1851;1852;1853	1851				8
DITSSIHFEAYR	Unmodified	1437.6888	0.6888432	2125	sp|Q9UHD8-3|SEPT9_HUMAN;sp|Q9UHD8-7|SEPT9_HUMAN;sp|Q9UHD8-2|SEPT9_HUMAN;sp|Q9UHD8-5|SEPT9_HUMAN;sp|Q9UHD8|SEPT9_HUMAN;sp|Q9UHD8-4|SEPT9_HUMAN;sp|Q9UHD8-9|SEPT9_HUMAN;sp|Q9UHD8-8|SEPT9_HUMAN	yes	no	0	0	0	0	0		1	1			1		1		37.196	37.196	3	0.024501	8853	20190821_JH_WT_Ubi	65.179	25.262	17591000	0	0	0	0	0	4089800	0	13502000	0			628	2125	545	1749;1750;1751;1752	1854;1855;1856;1857	1856				4
DITVSKNTSLPPLWSPEAER	GlyGly (K)	2353.1914	0.19138918	895	sp|P49790-2|NU153_HUMAN;sp|P49790|NU153_HUMAN;sp|P49790-3|NU153_HUMAN	yes	no	0	0	1	0	1							1			42.238	42.238	3	0.015223	11116	20190902_JH_MUT_Ubi_3	53.453	22.497	1332400	0	0	0	0	0	0	1332400	0	0			629	895	546	1753	1858	1858		863		1
DIVIEMEDTKPLLASK	Oxidation (M);GlyGly (K)	1930.9921	0.99214402	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN	yes	no	0	0	1	1	1					1					36.524	36.524	3	0.015822	9044	20190902_JH_EV_Ubi_3	63.212	11.337	1259000	0	0	0	0	1259000	0	0	0	0			630	2073	547	1754	1859	1859		1952;1953	1106	1
DIVINANPASPPLSLLVLHR	Unmodified	2138.2212	0.22117317	1219	sp|Q13155|AIMP2_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	51.316	51.316	3	0.0045482	14464	20190821_JH_WT_Ubi	61.87	44.849	9260700	0	937550	4208600	0	0	407970	585050	1466700	1654800			631	1219	548	1755;1756;1757;1758;1759;1760	1860;1861;1862;1863;1864;1865;1866	1864				7
DIVLVAYSALGSHR	Unmodified	1499.8096	0.80962704	1157	sp|Q04828|AK1C1_HUMAN;sp|P52895|AK1C2_HUMAN	yes	no	0	0	0	0	0			1							43.359	43.359	3	0.032338	11336	20190821_JH_WT_Ubi	47.915	16.088	4150600	0	0	4150600	0	0	0	0	0	0			632	1157	549	1761	1867	1867				1
DKAELISGPR	GlyGly (K)	1198.6306	0.63060004	800	sp|P38435|VKGC_HUMAN	yes	yes	0	0	1	0	1	1									25.782	25.782	3	0.025246	4918	20190821_JH_EV_Ubi	70.412	17.399	1486500	1486500	0	0	0	0	0	0	0	0			633	800	550	1762	1868	1868		779		1
DKAPVQPQQSPAAAPGGTDEK	GlyGly (K)	2205.0662	0.06618867	1224	sp|Q13200|PSMD2_HUMAN	yes	yes	0	0	1	0	1							1			24.018	24.018	3	0.0020704	5195	20190902_JH_MUT_Ubi_3	69.398	33.006	614260	0	0	0	0	0	0	614260	0	0			634	1224	551	1763	1869	1869		1289;1290		1
DKDDDGGEDDDANCNLICGDEYGPETR	Unmodified	3044.152	0.15198108	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	1									1	35.659	35.659	3	1.6754E-06	10039	20190902_JH_WT_Ubi_3	95.519	75.263	2796500	0	0	0	0	0	0	0	0	2796500			635	1182	552	1764	1870	1870				1
DKEAIQAYSESLMTSAPK	GlyGly (K)	2081.9939	0.99393493	1690	sp|Q8WTV0-3|SCRB1_HUMAN;sp|Q8WTV0-4|SCRB1_HUMAN;sp|Q8WTV0-2|SCRB1_HUMAN	yes	no	0	0	1	0	1			1							38.246	38.246	3	0.0011446	9265	20190821_JH_WT_Ubi	90.422	54.895	7416700	0	0	7416700	0	0	0	0	0	0			636	1690	553	1765	1871	1871		1682		0
DKEAIQAYSESLMTSAPK	Oxidation (M);GlyGly (K)	2097.9888	0.98884955	1690	sp|Q8WTV0-3|SCRB1_HUMAN;sp|Q8WTV0-4|SCRB1_HUMAN;sp|Q8WTV0-2|SCRB1_HUMAN	yes	no	0	0	1	1	1								1	1	33.848	33.848	3	2.2147E-15	9337	20190902_JH_WT_Ubi_3	157.83	103.44	14903000	0	0	0	0	0	0	0	8416300	6486800			637	1690	553	1766;1767	1872;1873;1874	1874		1682	967	3
DKGDEEEEGEEK	GlyGly (K)	1506.5958	0.59579026	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	1	0	1			1							12.508	12.508	3	4.9653E-08	2365	20190821_JH_WT_Ubi	154.67	122.68	1232200	0	0	1232200	0	0	0	0	0	0			638	704	554	1768	1875	1875		688;689		1
DKGDEEEEGEEKLEEK	GlyGly (K)	2005.86	0.86000345	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	1	0	2	1	1	1		1	1	1	1	1	23.101	23.101	3	9.9582E-32	5110	20190902_JH_MUT_Ubi_2	188.9	133.48	32892000	4579000	2088500	3236600	0	3480300	3589400	1862100	7260100	6795800			639	704	555	1769;1770;1771;1772;1773;1774;1775;1776	1876;1877;1878;1879;1880;1881;1882;1883;1884	1880		688;689		9
DKGSSLSAHGPEAHATETHCHETEESTIK	GlyGly (K)	3259.4436	0.44361049	182	sp|O15374-4|MOT5_HUMAN;sp|O15374-2|MOT5_HUMAN;sp|O15374-5|MOT5_HUMAN;sp|O15374|MOT5_HUMAN	yes	no	0	0	1	0	1								1		20.702	20.702	5	0.007105	5164	20190902_JH_WT_Ubi_2	44.711	19.106	1939700	0	0	0	0	0	0	0	1939700	0			640	182	556	1777	1885;1886	1885		156		2
DKILGATIENSR	GlyGly (K)	1429.7525	0.75250609	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	0	1		1			1					28.962	28.962	3	0.0034752	6513	20190902_JH_EV_Ubi_3	99.844	25.893	2666200	0	1297600	0	0	1368500	0	0	0	0		+	641	7;477	557	1778;1779	1887;1888	1887		14		2
DKPHVNVGTIGHVDHGK	Unmodified	1808.9282	0.92817905	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	1	1			1						20.551	20.551	4	0.0012692	3542	20190821_JH_EV_Ubi	85.576	63.91	9937100	8028800	0	0	1908300	0	0	0	0	0			642	883	558	1780;1781	1889;1890	1889				2
DKPLKDVIIADCGK	GlyGly (K)	1684.8818	0.8818057	660	sp|P23284|PPIB_HUMAN	yes	yes	0	0	1	0	2						1				29.242	29.242	3	0.0091968	7078	20190902_JH_MUT_Ubi_2	105.03	51.581	2049700	0	0	0	0	0	2049700	0	0	0			643	660	559	1782	1891	1891		631		1
DKYEPAAVSEQGDK	GlyGly (K)	1649.7533	0.75329395	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1		23.36	23.36	3	3.5946E-15	4890	20190902_JH_EV_Ubi_3	167.03	112.83	173740000	24861000	14103000	20803000	0	27704000	24786000	31756000	29725000	0			644	418	560	1783;1784;1785;1786;1787;1788;1789	1892;1893;1894;1895;1896;1897;1898	1893		392;393		7
DKYEPAAVSEQGDKK	GlyGly (K)	1777.8483	0.84825697	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	0	2		1		1	1		1			20.001	20.001	3	6.6085E-05	4070	20190902_JH_EV_Ubi_3	130.47	91.048	33899000	0	3595600	0	14578000	7161500	0	8563300	0	0			645	418	561	1790;1791;1792;1793	1899;1900;1901;1902	1900		392;393;394		4
DKYEPAAVSEQGDKK	2 GlyGly (K)	1891.8912	0.89118442	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	2	0	2				1						20.486	20.486	3	0.030393	4278	20190902_JH_EV_Ubi_2	98.421	60.767	752910	0	0	0	752910	0	0	0	0	0			646	418	561	1794	1903	1903		392;393;394		1
DKYMTETWDPSHAPDNFR	Oxidation (M);GlyGly (K)	2338.9913	0.99130917	2183	sp|Q9UP95-5|S12A4_HUMAN;sp|Q9UP95-2|S12A4_HUMAN;sp|Q9UP95-6|S12A4_HUMAN;sp|Q9UP95|S12A4_HUMAN;sp|Q9UP95-7|S12A4_HUMAN;sp|Q9UP95-3|S12A4_HUMAN	yes	no	0	0	1	1	1				1						32.609	32.609	3	0.0085784	7800	20190902_JH_EV_Ubi_2	65.107	35.752	1032100	0	0	0	1032100	0	0	0	0	0			647	2183	562	1795	1904;1905	1905		2041	1135	2
DKYPNLQVIGGNVVTAAQAK	GlyGly (K)	2199.1648	0.1647805	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	1	0	1		1				1	1			39.76	39.76	3	0.00046952	9593	20190821_JH_MUT_Ubi	82.265	47.518	10036000	0	3175400	0	0	0	4508900	2352000	0	0			648	533	563	1796;1797;1798	1906;1907;1908	1906		526		3
DLADELALVDVIEDK	Unmodified	1656.8458	0.84579735	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	55.9	55.9	3	4.6372E-08	15998	20190821_JH_WT_Ubi	143.05	88.53	17282000	0	0	8864400	305870	350800	0	0	3606300	4155000			649	373	564	1799;1800;1801;1802;1803;1804	1909;1910;1911;1912;1913;1914	1912				6
DLAGSIIGKGGQR	GlyGly (K)	1384.7423	0.74227576	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	0	1	0	1	1	1		1		1	1	1	1	30.918	30.918	3	0.0023849	7188	20190902_JH_MUT_Ubi_3	99.215	54.673	34856000	3022200	2877800	0	2674700	0	6946600	6005200	7653700	5676000			650	1033	565	1805;1806;1807;1808;1809;1810;1811	1915;1916;1917;1918;1919;1920;1921	1919		1009		7
DLAHCHAYLVEMSQLLQSMDVLHR	Unmodified	2865.3724	0.37242357	1955	sp|Q9H4L5-8|OSBL3_HUMAN;sp|Q9H4L5-7|OSBL3_HUMAN;sp|Q9H4L5-6|OSBL3_HUMAN;sp|Q9H4L5-5|OSBL3_HUMAN;sp|Q9H4L5-4|OSBL3_HUMAN;sp|Q9H4L5-3|OSBL3_HUMAN;sp|Q9H4L5-2|OSBL3_HUMAN;sp|Q9H4L5|OSBL3_HUMAN	yes	no	0	0	0	0	0			1							51.754	51.754	4	0.00055016	14612	20190821_JH_WT_Ubi	70.452	41.561	1932400	0	0	1932400	0	0	0	0	0	0			651	1955	566	1812	1922	1922				1
DLAKDITSDTSGDFR	GlyGly (K)	1753.8119	0.81187146	402	sp|P04083|ANXA1_HUMAN	yes	yes	0	0	1	0	1						1				35.243	35.243	2	0.010962	9388	20190902_JH_MUT_Ubi_2	75.739	21.596	375850	0	0	0	0	0	375850	0	0	0			652	402	567	1813	1923	1923		372		1
DLDEVLQTHSVFVNVSK	Unmodified	1928.9844	0.98435652	2220	sp|Q9Y3A5|SBDS_HUMAN	yes	yes	0	0	0	0	0			1							44.355	44.355	3	0.001782	11776	20190821_JH_WT_Ubi	77.42	38.909	4086800	0	0	4086800	0	0	0	0	0	0			653	2220	568	1814	1924	1924				1
DLDIIDNYDYSHTVK	Unmodified	1809.8421	0.84210896	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0								1		40.372	40.372	3	0.019811	11953	20190902_JH_WT_Ubi_2	55.196	1.8186	7798800	0	0	0	0	0	0	0	7798800	0			654	282	569	1815	1925	1925				1
DLEAEHVEVEDTTLNR	Unmodified	1868.8752	0.8752	1944	sp|Q9H3K6-2|BOLA2_HUMAN;sp|Q9H3K6|BOLA2_HUMAN	yes	no	0	0	0	0	0			1					1	1	33.522	33.522	3	7.0737E-14	9663	20190902_JH_WT_Ubi_2	154.1	104.51	17938000	0	0	5765200	0	0	0	0	6677500	5494900			655	1944	570	1816;1817;1818	1926;1927;1928	1927				3
DLEAEIHPLKNEER	GlyGly (K)	1805.8908	0.89079049	1931	sp|Q9H0X4-2|F234A_HUMAN;sp|Q9H0X4|F234A_HUMAN	yes	no	0	0	1	0	1		1						1		30.203	30.203	3	0.0077183	5934	20190821_JH_MUT_Ubi	93.959	51.391	8036500	0	2548900	0	0	0	0	0	5487700	0			656	1931	571	1819;1820	1929;1930	1929		1868		1
DLEALLNSKEAALSTALSEK	GlyGly (K)	2216.1536	0.15360669	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1		1	1			1	1			50.386	50.386	3	1.9361E-07	14148	20190821_JH_WT_Ubi	122.13	88.584	9062800	0	3308300	3765500	0	0	1327000	662050	0	0			657	390;391	572	1821;1822;1823;1824	1931;1932;1933;1934	1934		356		4
DLEEDHACIPIK	Unmodified	1438.6762	0.67622961	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0									1	31.834	31.834	3	0.0028912	8710	20190902_JH_WT_Ubi_3	97.813	24.885	14163000	0	0	0	0	0	0	0	0	14163000			658	545	573	1825	1935	1935				1
DLEEQLTEGQIAANEALK	GlyGly (K);2 Deamidation (NQ)	2086.9906	0.99062369	1540	sp|Q7Z7A1-2|CNTRL_HUMAN;sp|Q7Z7A1-5|CNTRL_HUMAN;sp|Q7Z7A1|CNTRL_HUMAN	yes	no	0	2	1	0	0				1						21.873	21.873	3	0.036	4552	20190902_JH_EV_Ubi_2	45.618	10.268	465670	0	0	0	465670	0	0	0	0	0			659	1540	574	1826	1936	1936	491			1
DLELQAASSR	Unmodified	1088.5462	0.54620171	1513	sp|Q70J99|UN13D_HUMAN;sp|Q70J99-3|UN13D_HUMAN	yes	no	0	0	0	0	0								1		30.606	30.606	2	0.021992	8565	20190902_JH_WT_Ubi_2	87.184	34.702	0	0	0	0	0	0	0	0	0	0			660	1513	575	1827	1937	1937				1
DLFHGATFVPR	Unmodified	1258.6459	0.64585618	1771	sp|Q96DV4|RM38_HUMAN	yes	yes	0	0	0	0	0								1	1	38.847	38.847	3	0.0025139	11544	20190902_JH_WT_Ubi_2	101.97	50.908	4055000	0	0	0	0	0	0	0	1882900	2172100			661	1771	576	1828;1829	1938;1939	1938				2
DLFLEAKDGPGK	GlyGly (K)	1402.7092	0.70924429	183	sp|O15375-2|MOT6_HUMAN;sp|O15375|MOT6_HUMAN	yes	no	0	0	1	0	1	1					1				32.966	32.966	3	0.025798	7642	20190821_JH_EV_Ubi	65.395	22.013	3134900	1374200	0	0	0	0	1760700	0	0	0			662	183	577	1830;1831	1940;1941	1940		158		2
DLGLAQDSATSTK	Unmodified	1305.6412	0.64122431	745	sp|P31937|3HIDH_HUMAN	yes	yes	0	0	0	0	0									1	29.77	29.77	2	0.0048588	8002	20190902_JH_WT_Ubi_3	95.401	53.006	5251300	0	0	0	0	0	0	0	0	5251300			663	745	578	1832	1942	1942				0
DLGNMEENKK	Oxidation (M);GlyGly (K)	1306.5823	0.58232922	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	0	1	1	1	1	1					1			14.568	14.568	3	0.0043465	2629	20190821_JH_EV_Ubi	99.013	48.227	48460000	32513000	8465000	0	0	0	0	7481900	0	0			664	1260	579	1833;1834;1835	1943;1944;1945	1943		1323	783	2
DLIPLQGGEAPKLGPGRPR	GlyGly (K)	2084.1491	0.14907086	350	sp|O95528|GTR10_HUMAN	yes	yes	0	0	1	0	2	1									34.767	34.767	4	0.030052	8292	20190821_JH_EV_Ubi	42.813	25.735	2512400	2512400	0	0	0	0	0	0	0	0			665	350	580	1836	1946	1946		318		1
DLLLTSSYLSDSGSTGEHTK	Unmodified	2110.0066	0.0066081055	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	0	0	0	1									39.37	39.37	3	0.0087481	9930	20190821_JH_EV_Ubi	56.215	9.2506	1801600	1801600	0	0	0	0	0	0	0	0			666	462;463	581	1837	1947	1947				1
DLLPSDMAVALLEAQAGTGHIIDPATSAR	Oxidation (M)	2948.4913	0.49133595	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	1	0			1							52.195	52.195	3	0.013664	14750	20190821_JH_WT_Ubi	41.609	16.005	7455100	0	0	7455100	0	0	0	0	0	0			667	1332	582	1838	1948	1948			830	1
DLLPSDMAVALLEAQAGTGHIIDPATSAR	Unmodified	2932.4964	0.49642133	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1						1	54.986	54.986	3	0.0012791	15767	20190902_JH_WT_Ubi_3	54.3	28.253	9708600	0	0	8464900	0	0	0	0	0	1243700			668	1332	582	1839;1840	1949;1950	1950				2
DLMPHDLAR	Oxidation (M)	1082.5179	0.51787847	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	1	0									1	24.776	24.776	3	0.034387	6427	20190902_JH_WT_Ubi_3	62.582	32.775	1729500	0	0	0	0	0	0	0	0	1729500			669	975	583	1841	1951	1951				1
DLNHVCVISETGK	Unmodified	1470.7137	0.71367774	380	sp|P00492|HPRT_HUMAN	yes	yes	0	0	0	0	0									1	29.575	29.575	3	0.018558	7937	20190902_JH_WT_Ubi_3	62.042	9.7948	5626700	0	0	0	0	0	0	0	0	5626700			670	380	584	1842	1952	1952				1
DLNYCFSGMSDHR	Oxidation (M)	1616.6348	0.6347755	748	sp|P31943|HNRH1_HUMAN;sp|P55795|HNRH2_HUMAN	yes	no	0	0	0	1	0			1						1	30.365	30.365	3	0.03059	6424	20190821_JH_WT_Ubi	56.551	43.924	21455000	0	0	9743000	0	0	0	0	0	11712000			671	748	585	1843;1844	1953;1954	1953			468	2
DLPNALDEKQLIEK	GlyGly (K)	1738.9101	0.91012895	2046	sp|Q9NVJ2|ARL8B_HUMAN	yes	yes	0	0	1	0	1						1		1	1	37.2	37.2	3	0.018853	11001	20190902_JH_WT_Ubi_2	64.534	29.416	132910000	0	0	0	0	0	61221000	0	36136000	35553000			672	2046	586	1845;1846;1847	1955;1956;1957	1956		1939;1940		3
DLPTIPGVTSPSSDEPPMEASQSHLR	Oxidation (M)	2763.3021	0.3021382	1251	sp|Q13541|4EBP1_HUMAN	yes	yes	0	0	0	1	0									1	39.903	39.903	3	0.0075114	11484	20190902_JH_WT_Ubi_3	49.613	16.265	2246000	0	0	0	0	0	0	0	0	2246000			673	1251	587	1848	1958	1958			780	1
DLQANVEHLVQK	Unmodified	1392.7361	0.73612775	464	sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN	yes	no	0	0	0	0	0			1							35.029	35.029	2	0.0054955	8005	20190821_JH_WT_Ubi	89.805	31.371	3055700	0	0	3055700	0	0	0	0	0	0			674	464	588	1849	1959	1959				0
DLQNVNITLR	Unmodified	1184.6513	0.65133548	771	sp|P35232|PHB_HUMAN;sp|P35232-2|PHB_HUMAN	yes	no	0	0	0	0	0								1		38.478	38.478	2	0.005548	11300	20190902_JH_WT_Ubi_2	132.25	44.553	25788000	0	0	0	0	0	0	0	25788000	0			675	771	589	1850	1960	1960				0
DLQQYQSQAKQLFR	GlyGly (K)	1865.9384	0.93840938	288	sp|O75396|SC22B_HUMAN	yes	yes	0	0	1	0	1	1					1				37.823	37.823	3	0.012203	9383	20190821_JH_EV_Ubi	71.176	31.151	1922300	1191800	0	0	0	0	730510	0	0	0			676	288	590	1851;1852	1961;1962	1961		279		2
DLQSNVEHLTEK	Unmodified	1411.6943	0.69432251	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	0								1	1	31.779	31.779	2	4.3708E-05	9033	20190902_JH_WT_Ubi_2	124.39	72.13	7594400	0	0	0	0	0	0	0	4189900	3404500			677	1136	591	1853;1854	1963;1964	1963				0
DLSAAGIGLLAAATQSLSMPASLGR	Oxidation (M)	2386.2526	0.25260923	841	sp|P43243|MATR3_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1		1	57.119	57.119	3	5.4341E-121	16237	20190821_JH_WT_Ubi	243.7	204.31	11370000	0	3387300	1997400	0	0	2196000	2606700	0	1182700			678	841	592	1855;1856;1857;1858;1859	1965;1966;1967;1968;1969	1968			533	5
DLSHIGDAVVISCAK	Unmodified	1583.7977	0.79774172	530	sp|P12004|PCNA_HUMAN	yes	yes	0	0	0	0	0				1						37.32	37.32	3	0.027264	9201	20190902_JH_EV_Ubi_2	58.268	24.727	0	0	0	0	0	0	0	0	0	0			679	530	593	1860	1970	1970				1
DLSHIGDAVVISCAKDGVK	GlyGly (K)	2097.0525	0.052452861	530	sp|P12004|PCNA_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1	1	1	35.485	35.485	3	1.2905E-23	9963	20190902_JH_WT_Ubi_3	166.67	107.84	498190000	2516500	81148000	0	71217000	101470000	2575500	80189000	61994000	97084000			680	530	594	1861;1862;1863;1864;1865;1866;1867;1868	1971;1972;1973;1974;1975;1976;1977;1978	1978		525		8
DLSKPIGALNPK	GlyGly (K)	1365.7616	0.76161421	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN;sp|Q8NFP9-3|NBEA_HUMAN;sp|Q8NFP9|NBEA_HUMAN	yes	no	0	0	1	0	1				1	1					30.883	30.883	3	0.0044294	7218	20190902_JH_EV_Ubi_3	96.756	48.096	2127700	0	0	0	1036600	1091200	0	0	0	0			681	910	595	1869;1870	1979;1980	1980		871;872		2
DLSLHVHGGEK	Unmodified	1190.6044	0.60438529	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN	yes	no	0	0	0	0	0				1						21.666	21.666	3	0.035041	4510	20190902_JH_EV_Ubi_2	53.597	11.259	2338000	0	0	0	2338000	0	0	0	0	0			682	186	596	1871	1981	1981				1
DLSMFSQNMTHIIKDVIKYK	2 Oxidation (M);Deamidation (NQ)	2443.2127	0.21271825	92	sp|A6NMZ7-2|CO6A6_HUMAN;sp|A6NMZ7|CO6A6_HUMAN	yes	no	0	1	0	2	2									1	48.141	48.141	3	0.027799	14115	20190902_JH_WT_Ubi_3	48.848	6.4657	0	0	0	0	0	0	0	0	0	0			683	92	597	1872	1982	1982	36;748		46;47	1
DLSTIEPLK	Unmodified	1014.5597	0.55972651	806;354	sp|P39687|AN32A_HUMAN;sp|O43423|AN32C_HUMAN;sp|O95626|AN32D_HUMAN	no	no	0	0	0	0	0									1	37.76	37.76	2	0.016967	10752	20190902_JH_WT_Ubi_3	101.64	0	10233000	0	0	0	0	0	0	0	0	10233000			684	806;354	598	1873	1983	1983				0
DLSTVEALQNLK	Unmodified	1329.714	0.71399532	1874	sp|Q9BTT0-3|AN32E_HUMAN;sp|Q9BTT0|AN32E_HUMAN	yes	no	0	0	0	0	0								1		43.378	43.378	2	0.013414	12953	20190902_JH_WT_Ubi_2	63.624	11.142	2045200	0	0	0	0	0	0	0	2045200	0			685	1874	599	1874	1984	1984				0
DLSTVEALQNLKNLK	GlyGly (K)	1798.9789	0.97887721	1874	sp|Q9BTT0-3|AN32E_HUMAN;sp|Q9BTT0|AN32E_HUMAN	yes	no	0	0	1	0	1		1				1				43.048	43.048	3	0.0018007	10814	20190821_JH_MUT_Ubi	90.861	42.347	4863700	0	2376500	0	0	0	2487100	0	0	0			686	1874	600	1875;1876	1985;1986	1985		1818		2
DLTALSNMLPK	Oxidation (M)	1217.6326	0.63257388	564	sp|P15144|AMPN_HUMAN	yes	yes	0	0	0	1	0			1							40.99	40.99	2	0.00015429	10338	20190821_JH_WT_Ubi	157.34	80.027	3214700	0	0	3214700	0	0	0	0	0	0			687	564	601	1877	1987	1987			354	0
DLTDGHFENILADNSVNDQTK	Unmodified	2345.0771	0.077147287	790	sp|P36952|SPB5_HUMAN;sp|P36952-2|SPB5_HUMAN	yes	no	0	0	0	0	0				1		1		1	1	42.393	42.393	3	1.7348E-08	12279	20190902_JH_WT_Ubi_3	114.75	74.563	11320000	0	0	0	1211000	0	1124700	0	5672400	3311900			688	790	602	1878;1879;1880;1881	1988;1989;1990;1991	1991				4
DLTDYLMKILTER	Oxidation (M);GlyGly (K)	1739.8764	0.87638598	1000;1087;1094;1420	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN	no	no	0	0	1	1	1		1	1			1	1	1	1	53.824	53.824	3	3.446E-08	14998	20190902_JH_MUT_Ubi_2	152.38	99.242	29176000	0	2697600	11718000	0	0	2964500	1648900	3903900	6242700			689	1000;1087;1094;1420	603	1882;1883;1884;1885;1886;1887	1992;1993;1994;1995;1996;1997;1998	1993		979	615	7
DLTDYLMKILTER	GlyGly (K)	1723.8815	0.88147135	1000;1087;1094;1420	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN	no	no	0	0	1	0	1		1	1							55.803	55.803	3	0.0020564	15996	20190821_JH_WT_Ubi	101.39	54.403	7198100	0	1545600	5652600	0	0	0	0	0	0			690	1000;1087;1094;1420	603	1888;1889	1999;2000	2000		979		2
DLVEAVAHILGIR	Unmodified	1404.8089	0.80889876	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1		1	56.897	56.897	3	3.3035E-12	14869	20190821_JH_EV_Ubi	161.93	118.43	57259000	6565500	8110500	4530500	0	2596200	2564800	30501000	0	2390600			691	881	604	1890;1891;1892;1893;1894;1895;1896	2001;2002;2003;2004;2005;2006;2007;2008	2001				8
DLVILLYETALLSSGFSLEDPQTHANR	Unmodified	3001.5397	0.53966635	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	0	0					1	1	1	1	1	58.483	58.483	3	9.4326E-14	14291	20190902_JH_MUT_Ubi_3	122.3	84.441	9411800	0	0	0	0	1909700	1218600	613510	1493400	4176600			692	455	605	1897;1898;1899;1900;1901	2009;2010;2011;2012;2013;2014;2015;2016;2017	2013				9
DLVTTLGGALLWLSGHAGTQAQGAAR	Unmodified	2563.3507	0.35068379	623	sp|P19971|TYPH_HUMAN;sp|P19971-2|TYPH_HUMAN	yes	no	0	0	0	0	0		1	1					1		56.61	56.61	3	1.3157E-43	16165	20190821_JH_WT_Ubi	171.39	141.62	24310000	0	5077000	19233000	0	0	0	0	0	0			693	623	606	1902;1903;1904	2018;2019;2020	2019				3
DLVVLLFETALLSSGFSLEDPQTHSNR	Unmodified	2987.524	0.52401629	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0					1				1	60.023	60.023	3	6.1125E-07	14069	20190902_JH_EV_Ubi_3	91.091	77.198	4459500	0	0	0	0	1805100	0	0	0	2654400			694	465	607	1905;1906	2021;2022	2021				2
DLYANTVLSGGTTMYPGIADR	Oxidation (M)	2230.0576	0.057597819	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	1	0	1	1	1	1	1	1		2	1	45.928	45.928	2;3	9.184E-81	12271	20190821_JH_WT_Ubi	227.36	182.82	590490000	34610000	35366000	115870000	27811000	29378000	64229000	0	169300000	113930000			695	1000;1087	608	1907;1908;1909;1910;1911;1912;1913;1914;1915	2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033	2029			616	11
DLYANTVLSGGTTMYPGIADR	Unmodified	2214.0627	0.062683196	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	48.57	48.57	3	1.9264E-22	13465	20190821_JH_WT_Ubi	156.61	116.09	93519000	4249200	7542600	31410000	1326800	1061800	6374700	5705600	14805000	21043000			696	1000;1087	608	1916;1917;1918;1919;1920;1921;1922;1923;1924	2034;2035;2036;2037;2038;2039;2040;2041;2042	2040				9
DLYANTVLSGGTTMYPGIADR	Deamidation (NQ)	2215.0467	0.046698781	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	1	0	0	0			1							50.245	50.245	2	2.048E-10	14067	20190821_JH_WT_Ubi	127.05	82.623	3569400	0	0	3569400	0	0	0	0	0	0			697	1000;1087	608	1925	2043	2043	329			1
DLYANTVLSGGTTMYPGIADR	Oxidation (M);Deamidation (NQ)	2231.0416	0.041613403	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	1	0	1	0								1		46.134	46.134	3	0.021611	13900	20190902_JH_WT_Ubi_2	56.748	33.066	9235100	0	0	0	0	0	0	0	9235100	0			698	1000;1087	608	1926	2044	2044	329		616	1
DLYDAGVKR	GlyGly (K)	1149.5778	0.57783619	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	1	0	1	1					1				25.098	25.098	3	0.014408	5656	20190902_JH_MUT_Ubi_2	90.601	49.174	5578800	1191600	0	0	0	0	4387200	0	0	0			699	446	609	1927;1928	2045;2046	2046		439		2
DLYIRPNIAQKR	Deamidation (NQ)	1486.8256	0.82561145	2239	sp|Q9Y5B9|SP16H_HUMAN	yes	yes	0	1	0	0	2									1	49.445	49.445	3	0.033915	14491	20190902_JH_WT_Ubi_3	66.663	11.623	3079100	0	0	0	0	0	0	0	0	3079100			700	2239	610	1929	2047	2047	1333			0
DLYLENPEIK	Unmodified	1232.6289	0.62886871	645	sp|P21980|TGM2_HUMAN	yes	yes	0	0	0	0	0								1		39.179	39.179	2	0.0015401	11534	20190902_JH_WT_Ubi_2	125.97	54.277	151240000	0	0	0	0	0	0	0	151240000	0			701	645	611	1930	2048	2048				1
DLYLENPEIKIR	GlyGly (K)	1615.857	0.85697116	645	sp|P21980|TGM2_HUMAN	yes	yes	0	0	1	0	1		1	1							38.553	38.553	3	0.019121	9302	20190821_JH_WT_Ubi	71.176	34.855	3287900	0	1011200	2276700	0	0	0	0	0	0			702	645	612	1931;1932	2049;2050	2050		617		2
DLYRDVMWENYSNFISLGPSISK	Oxidation (M);Deamidation (NQ)	2750.2898	0.2897826	1991	sp|Q9HCL3|ZFP14_HUMAN	yes	yes	0	1	0	1	1							1			40.936	40.936	3	0.030812	10675	20190902_JH_MUT_Ubi_3	44.238	9.8013	0	0	0	0	0	0	0	0	0	0			703	1991	613	1933	2051	2051	637		1077	1
DMAGASGGVAAPLPQKVPPTTAVEATVGACASSSTQSTR	Oxidation (M);GlyGly (K)	3857.8524	0.85237943	2237	sp|Q9Y561-2|LRP12_HUMAN;sp|Q9Y561|LRP12_HUMAN	yes	no	0	0	1	1	1								1		40.22	40.22	3	0.00013456	11903	20190902_JH_WT_Ubi_2	52.48	32.028	1237400	0	0	0	0	0	0	0	1237400	0			704	2237	614	1934	2052	2052		2077	1155	1
DMAIATGGAVFGEEGLTLNLEDVQPHDLGK	Oxidation (M)	3112.5023	0.50229457	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	1	0	1	1	1			1			1	50.291	50.291	3	1.0979E-25	13695	20190821_JH_EV_Ubi	137.41	108.73	21970000	3601400	915270	11828000	0	0	679360	0	0	4945800			705	515	615	1935;1936;1937;1938;1939	2053;2054;2055;2056;2057	2053			298	5
DMAIATGGAVFGEEGLTLNLEDVQPHDLGK	Unmodified	3096.5074	0.50737995	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	0			1							52.476	52.476	3	6.245E-05	14821	20190821_JH_WT_Ubi	73.058	46.557	3872900	0	0	3872900	0	0	0	0	0	0			706	515	615	1940	2058;2059	2058				2
DMAQLPETEIAPAK	Oxidation (M)	1528.7443	0.74430917	703	sp|P27816-2|MAP4_HUMAN;sp|P27816-6|MAP4_HUMAN;sp|P27816|MAP4_HUMAN	yes	no	0	0	0	1	0									1	34.403	34.403	2	0.0042959	9611	20190902_JH_WT_Ubi_3	96.64	36.243	2714700	0	0	0	0	0	0	0	0	2714700			707	703	616	1941	2060	2060			447	0
DMFQETMEAMR	2 Oxidation (M)	1419.5469	0.54687169	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	2	0			1							31.822	31.822	2	0.029019	6893	20190821_JH_WT_Ubi	61.815	25.872	0	0	0	0	0	0	0	0	0	0			708	776	617	1942	2061	2061			485;486	1
DMIIMIVPMKLDVLALPGK	Oxidation (M);GlyGly (K)	2226.219	0.2189896	29		yes	no	0	0	1	1	1							1			45.401	45.401	4	0.019755	12074	20190902_JH_MUT_Ubi_3	47.548	8.4042	46563000	0	0	0	0	0	0	46563000	0	0	+		709	29	618	1943	2062	2062		45	27	1
DMINMKALAALKLIFNQK	2 GlyGly (K);2 Deamidation (NQ)	2291.2018	0.20175964	1485	sp|Q6PI77|BHLH9_HUMAN	yes	yes	0	2	2	0	2								1		50.088	50.088	4	0.023728	15000	20190902_JH_WT_Ubi_2	52.599	24.433	1065900	0	0	0	0	0	0	0	1065900	0			710	1485	619	1944	2063	2063	468;1087	1495;1496		0
DMKESIQAPTIYK	GlyGly (K)	1636.8131	0.81305744	22		yes	no	0	0	1	0	1			1							24.979	24.979	3	0.02376	4843	20190821_JH_WT_Ubi	63.602	15.897	2153500	0	0	2153500	0	0	0	0	0	0	+		711	22	620	1945	2064	2064		43		1
DMLEAGILDTYLGK	Oxidation (M)	1553.7647	0.76471026	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	0	1	0			1							49.688	49.688	2	0.02801	13831	20190821_JH_WT_Ubi	77.124	34.786	2155600	0	0	2155600	0	0	0	0	0	0			712	912	621	1946	2065	2065			573	1
DMLLANPHELSLLKER	Oxidation (M);GlyGly (K)	2008.0412	0.041159893	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	36.566	36.566	3	2.8884E-07	8961	20190902_JH_EV_Ubi_2	124.78	91.091	53602000	3681200	5487100	9553800	3485600	3220200	8770300	5071000	6551000	7782200			713	1446	622	1947;1948;1949;1950;1951;1952;1953;1954;1955	2066;2067;2068;2069;2070;2071;2072;2073;2074	2067		1461	885	9
DMLLANPHELSLLKER	GlyGly (K)	1992.0462	0.046245271	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN	yes	no	0	0	1	0	1		1								39.811	39.811	3	0.0021581	9381	20190821_JH_MUT_Ubi	84.046	54.706	2471600	0	2471600	0	0	0	0	0	0	0			714	1446	622	1956	2075	2075		1461		1
DMSGHYQNALYLGDVSER	Oxidation (M)	2069.9113	0.91126793	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	0	1	0								1		35.674	35.674	3	0.0346	10377	20190902_JH_WT_Ubi_2	53.395	6.3573	0	0	0	0	0	0	0	0	0	0			715	950	623	1957	2076	2076				1
DMSIQELAVLVSGQK	Unmodified	1616.8444	0.84435757	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	0	0	0		1								54.526	54.526	3	0.032784	14542	20190821_JH_MUT_Ubi	53.491	5.8691	0	0	0	0	0	0	0	0	0	0			716	245	624	1958	2077	2077				1
DMTKNMGVIAER	2 Oxidation (M);GlyGly (K)	1509.6916	0.69156209	1415	sp|Q4KMQ2-3|ANO6_HUMAN;sp|Q4KMQ2|ANO6_HUMAN;sp|Q4KMQ2-2|ANO6_HUMAN	yes	no	0	0	1	2	1				1	1	1				20.719	20.719	3	0.0070986	4328	20190902_JH_EV_Ubi_3	78.964	31.07	8011400	0	0	0	2770600	3209500	2031400	0	0	0			717	1415	625	1959;1960;1961	2078;2079;2080	2079		1436	865;866	3
DMTSEQLDDILKYHTEIVFAR	Oxidation (M);GlyGly (K)	2653.2694	0.26938151	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN	yes	no	0	0	1	1	1		1	1						1	46.27	46.27	4	4.0523E-07	12518	20190821_JH_WT_Ubi	107.51	76.851	7111700	0	2220400	3170100	0	0	0	0	0	1721200			718	418	626	1962;1963;1964	2081;2082;2083	2082		387	211	2
DMVVGFANLGILHVTK	Oxidation (M)	1728.9233	0.92327659	622	sp|P19838|NFKB1_HUMAN;sp|P19838-2|NFKB1_HUMAN	yes	no	0	0	0	1	0						1	1			45.139	45.139	3	0.0065731	12004	20190902_JH_MUT_Ubi_3	70.281	30.214	2570300	0	0	0	0	0	1509800	1060400	0	0			719	622	627	1965;1966	2084;2085	2085			381	2
DNHLLGTFDLTGIPPAPR	Unmodified	1933.0058	0.005760665	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0	1			1		1	1	1	1	47.072	47.072	3	0.00053906	13730	20190902_JH_WT_Ubi_3	84.859	44.617	22630000	3908900	0	0	1775700	0	2324900	2478500	5605000	6536900			720	517	628	1967;1968;1969;1970;1971;1972	2086;2087;2088;2089;2090;2091	2091				6
DNHLVHLPLTLILVNK	Unmodified	1838.0778	0.077803396	2021	sp|Q9NRY4|RHG35_HUMAN	yes	yes	0	0	0	0	0		1	1					1		45.884	45.884	3	7.0373E-10	12351	20190821_JH_WT_Ubi	137.39	61.911	7974200	0	1108100	5640200	0	0	0	0	1226000	0			721	2021	629	1973;1974;1975	2092;2093;2094	2093				3
DNIDITLQWLIQHSK	Unmodified	1822.9577	0.95774784	2046	sp|Q9NVJ2|ARL8B_HUMAN;sp|Q96BM9|ARL8A_HUMAN	yes	no	0	0	0	0	0	1									51.795	51.795	3	0.02456	13998	20190821_JH_EV_Ubi	50.843	20.015	437320	437320	0	0	0	0	0	0	0	0			722	2046	630	1976	2095	2095				1
DNIQGITKPAIR	GlyGly (K)	1438.7892	0.78922595	1057	sp|P62805|H4_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.34	29.34	3	0.00049157	6686	20190902_JH_MUT_Ubi_3	120.57	76.939	78340000	0	4861000	16372000	2766800	3954600	8809600	8271100	16837000	16467000			723	1057	631	1977;1978;1979;1980;1981;1982;1983;1984;1985	2096;2097;2098;2099;2100;2101;2102;2103;2104	2101		1031		9
DNLAKQQQQQQNDVVK	GlyGly (K)	1996.9926	0.9926298	1338	sp|Q15286|RAB35_HUMAN	yes	yes	0	0	1	0	1		1						1		21.895	21.895	3	0.008036	3418	20190821_JH_MUT_Ubi	74.966	46.187	2603300	0	737430	0	0	0	0	0	1865900	0			724	1338	632	1986;1987	2105;2106	2105		1393		0
DNLEIKQEEKFVGQCIK	GlyGly (K);Deamidation (NQ)	2192.0783	0.078333261	2050	sp|Q9NWK9-2|BCD1_HUMAN;sp|Q9NWK9|BCD1_HUMAN	yes	no	0	1	1	0	2	2						1			38.484	38.484	3	0.001417	9728	20190821_JH_EV_Ubi	81.327	15.816	133010000	123360000	0	0	0	0	0	9647500	0	0			725	2050	633	1988;1989;1990	2107;2108;2109	2108	651;1279	1942;1943		2
DNLEIKQEEKFVGQCIK	GlyGly (K);2 Deamidation (NQ)	2193.0623	0.062348845	2050	sp|Q9NWK9-2|BCD1_HUMAN;sp|Q9NWK9|BCD1_HUMAN	yes	no	0	2	1	0	2				1			1			39.344	39.344	3	0.0047452	9888	20190902_JH_EV_Ubi_2	77.068	23.122	12510000	0	0	0	2851900	0	0	9658500	0	0			726	2050	633	1991;1992	2110;2111	2110	651;1279	1942;1943		2
DNLSYIEHIFEISR	Unmodified	1734.8577	0.85769944	1329	sp|Q15121|PEA15_HUMAN;sp|Q15121-2|PEA15_HUMAN	yes	no	0	0	0	0	0			1					1	1	51.515	51.515	3	1.1208E-10	14482	20190821_JH_WT_Ubi	149.32	106.37	6595400	0	0	2518800	0	0	0	0	2430600	1646000			727	1329	634	1993;1994;1995	2112;2113;2114	2112				3
DNLTLWTADNAGEEGGEAPQEPQS	Unmodified	2528.0939	0.093919563	750	sp|P31947-2|1433S_HUMAN;sp|P31947|1433S_HUMAN	yes	no	0	0	0	0	0				1				1	1	49.718	49.718	3	2.4515E-12	12092	20190902_JH_EV_Ubi_2	123.32	91.016	2700500	0	0	0	427580	0	0	0	1310600	962320			728	750	635	1996;1997;1998	2115;2116;2117;2118	2115				4
DNLTLWTSDMQGDGEEQNKEALQDVEDENQ	Oxidation (M);GlyGly (K)	3580.502	0.50197281	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1		1	45.464	45.464	3	1.5251E-115	11759	20190821_JH_MUT_Ubi	237.71	199.33	30952000	3688400	7339800	5284800	1284500	1310100	6076600	3754100	0	2213300			729	1043	636	1999;2000;2001;2002;2003;2004;2005;2006	2119;2120;2121;2122;2123;2124;2125;2126;2127;2128;2129;2130	2124		1017	643	12
DNLTLWTSDMQGDGEEQNKEALQDVEDENQ	GlyGly (K)	3564.5071	0.50705819	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	1	0	1		1	1				1			48.058	48.058	3	7.2681E-61	12597	20190821_JH_MUT_Ubi	186.54	167.84	12150000	0	5386200	4567900	0	0	0	2196200	0	0			730	1043	636	2007;2008;2009	2131;2132;2133	2131		1017		3
DNLTLWTSDMQGDGEEQNKEALQDVEDENQ	Oxidation (M);GlyGly (K);Deamidation (NQ)	3581.486	0.4859884	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	1	1	1	1						1	1			45.942	45.942	3	0.0004804	13357	20190902_JH_MUT_Ubi_2	73.519	54.913	2004000	0	0	0	0	0	1076700	927360	0	0			731	1043	636	2010;2011	2134;2135	2134	962;963	1017	643	2
DNLTLWTSDTQGDEAEAGEGGEN	Unmodified	2407.9888	0.98878579	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	0	0	0	0									1	49.413	49.413	3	0.00064497	14501	20190902_JH_WT_Ubi_3	72.167	53.872	1686600	0	0	0	0	0	0	0	0	1686600			732	1078;1079	637	2012	2136	2136				1
DNNLLGK	Unmodified	772.40792	0.40791731	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN;sp|P54652|HSP72_HUMAN	yes	no	0	0	0	0	0									1	25.52	25.52	2	0.013321	6608	20190902_JH_WT_Ubi_3	108.09	41.288	17136000	0	0	0	0	0	0	0	0	17136000			733	519	638	2013	2137	2137				1
DNTIEHLLPLFLAQLK	Unmodified	1864.0458	0.045834566	731	sp|P30153|2AAA_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	55.914	55.914	3	1.9505E-19	16519	20190902_JH_WT_Ubi_2	168	134.56	66603000	0	24164000	24162000	0	0	3541800	5461100	6367300	2906700			734	731	639	2014;2015;2016;2017;2018;2019	2138;2139;2140;2141;2142;2143	2142				6
DNTINLIHTFR	Unmodified	1342.6993	0.69934831	175	sp|O15144|ARPC2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	37.581	37.581	3	0.01349	8969	20190821_JH_WT_Ubi	73.632	45.233	37495000	0	0	14659000	0	0	0	0	11887000	10949000			735	175	640	2020;2021;2022	2144;2145;2146	2144				3
DNTNVNADVQKLQQQLQDIK	GlyGly (K)	2425.2197	0.2197292	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1						1				43.228	43.228	3	0.023245	12472	20190902_JH_MUT_Ubi_2	48.824	24.03	1775300	0	0	0	0	0	1775300	0	0	0			736	1570	641	2023	2147	2147		1555		1
DNYVPEVSALDQEIIEVDPDTK	Unmodified	2488.1857	0.18569468	476	sp|P08708|RS17_HUMAN	yes	yes	0	0	0	0	0									1	52.931	52.931	3	9.1715E-06	15328	20190902_JH_WT_Ubi_3	87.729	64.854	1690800	0	0	0	0	0	0	0	0	1690800			737	476	642	2024	2148	2148				1
DPAAVTESKEGTEASASK	GlyGly (K)	1890.8807	0.88067931	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN	yes	no	0	0	1	0	1	1	1	1					1		22.203	22.203	3	1.7533E-06	4130	20190821_JH_WT_Ubi	120.99	93.737	24451000	4146300	1064000	7706000	0	0	0	0	11535000	0			738	1676	643	2025;2026;2027;2028	2149;2150;2151;2152	2151		1672;1673		4
DPANYILHAVLVHSGDNHGGHYVVYLNPK	Unmodified	3198.5999	0.59991562	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	0	0	0			1							43.025	43.025	5	0.013853	11183	20190821_JH_WT_Ubi	39.038	21.131	8040100	0	0	8040100	0	0	0	0	0	0			739	1739	644	2029	2153	2153				1
DPAQPKESSKVDANEEVEALIVK	2 GlyGly (K)	2723.3614	0.36136764	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	2	0	2	1				1	1				35.317	35.317	4	0.024941	8621	20190821_JH_EV_Ubi	56.708	26.866	5883100	1920000	0	0	0	2519800	1443300	0	0	0			740	760	645	2030;2031;2032	2154;2155;2156	2154		731;732;733		3
DPDAGIDEAQVEQDAQALFQAGELK	Unmodified	2657.2457	0.24566918	479	sp|P08758|ANXA5_HUMAN	yes	yes	0	0	0	0	0			1					1	1	54.704	54.704	3	7.3989E-44	15659	20190821_JH_WT_Ubi	178.77	129	17027000	0	0	9399400	0	0	0	0	4039200	3588400			741	479	646	2033;2034;2035	2157;2158;2159	2157				3
DPDASKPEDWDER	Unmodified	1558.6536	0.65357991	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	1								1		26.968	26.968	3	0.0060267	7300	20190902_JH_WT_Ubi_2	105.65	84.699	6184800	0	0	0	0	0	0	0	6184800	0			742	702	647	2036	2160	2160				1
DPFVPSSAAKPSK	GlyGly (K)	1443.7358	0.73579339	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN	yes	no	0	0	1	0	1		1		1		1	1			26.21	26.21	3	0.00012035	4705	20190821_JH_MUT_Ubi	125.53	80.247	7679300	0	1084500	0	1181400	0	2143300	3270000	0	0			743	2101	648	2037;2038;2039;2040	2161;2162;2163;2164	2162		1972;1973		4
DPILFPSFIHSQK	Unmodified	1527.8086	0.80856441	398	sp|P04040|CATA_HUMAN	yes	yes	0	0	0	0	0			1							43.989	43.989	3	0.0024355	11624	20190821_JH_WT_Ubi	94.122	38.807	1387500	0	0	1387500	0	0	0	0	0	0			744	398	649	2041	2165	2165				1
DPLTNKVALVTASTDWIGFAVAQR	Deamidation (NQ)	2573.349	0.34895246	501	sp|P0CG22|DR4L1_HUMAN	yes	yes	0	1	0	0	1								1		54.419	54.419	3	0.036488	16193	20190902_JH_WT_Ubi_2	42.904	18.171	0	0	0	0	0	0	0	0	0	0			745	501	650	2042	2166	2166	191			1
DPNKLVLCEVFK	GlyGly (K)	1574.8127	0.81266351	562	sp|P15104|GLNA_HUMAN	yes	yes	0	0	1	0	1		1				1	1			40.674	40.674	3	0.00032014	9923	20190821_JH_MUT_Ubi	123.26	83.631	16511000	0	4393100	0	0	0	7484200	4633900	0	0			746	562	651	2043;2044;2045	2167;2168;2169	2167		553		3
DPQFSLISATIKSMK	Oxidation (M);GlyGly (K)	1794.9186	0.91858514	305	sp|O75886-2|STAM2_HUMAN;sp|O75886|STAM2_HUMAN	yes	no	0	0	1	1	1		1				2	1			39.578	39.578	2;3	1.6722E-05	9496	20190821_JH_MUT_Ubi	124.81	92.109	13419000	0	2836800	0	0	0	6116700	4465300	0	0			747	305	652	2046;2047;2048;2049	2170;2171;2172;2173	2170		289	141	4
DPSQALVLRSGPLPGEVNTYQIQK	3 Deamidation (NQ)	2612.3334	0.33336197	1505	sp|Q6ZS11|RINL_HUMAN	yes	yes	0	3	0	0	1						1				45.882	45.882	4	0.0039061	13347	20190902_JH_MUT_Ubi_2	53.585	31.986	69573000	0	0	0	0	0	69573000	0	0	0			748	1505	653	2050	2174	2174	477;1094;1095;1096			1
DPVPGYSVPAAEHSTITAWGK	Unmodified	2182.0695	0.069483134	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0								1		39.394	39.394	3	0.0074635	11626	20190902_JH_WT_Ubi_2	56.347	31.808	10183000	0	0	0	0	0	0	0	10183000	0			749	845	654	2051	2175	2175				1
DPVQEAWAEDVDLR	Unmodified	1641.7635	0.76346471	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0	1		1		1			1	1	45.019	45.019	3	6.0063E-05	13613	20190902_JH_WT_Ubi_2	120.21	79.325	19654000	821310	0	7358300	0	676970	0	0	5643100	5154800			750	556	655	2052;2053;2054;2055;2056	2176;2177;2178;2179;2180	2179				5
DQEEGVMEKLQNGDLDHMIPQHCSSELDGK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3585.5294	0.52939031	1320	sp|Q15043-2|S39AE_HUMAN;sp|Q15043-3|S39AE_HUMAN;sp|Q15043|S39AE_HUMAN	yes	no	0	1	1	2	1		1	1	1	1			1	1	31.819	31.819	4;5	0.00013708	7453	20190902_JH_EV_Ubi_3	66.545	48.829	42840000	0	973890	6259700	7832900	4238100	0	0	11935000	11600000			751	1320	656	2057;2058;2059;2060;2061;2062	2181;2182;2183;2184;2185;2186	2182	422;1035;1036;1037	1380	824;825	6
DQEVNFQEYVTFLGALALIYNEALK	Unmodified	2887.4644	0.46437615	434	sp|P06703|S10A6_HUMAN	yes	yes	0	0	0	0	0				1	1	1	1		1	62.623	62.623	3	1.855E-43	16310	20190902_JH_MUT_Ubi_2	172.34	129.4	13402000	0	0	0	1975000	4018300	2239300	2431200	0	2738200			752	434	657	2063;2064;2065;2066;2067	2187;2188;2189;2190;2191;2192	2190				6
DQFPEVYVPTVFENYVADIEVDGK	Unmodified	2772.317	0.31704321	1025	sp|P61586|RHOA_HUMAN	yes	yes	0	0	0	0	0								1		57.376	57.376	3	1.0354E-09	16727	20190902_JH_WT_Ubi_2	115.5	90.247	1501100	0	0	0	0	0	0	0	1501100	0			753	1025	658	2068	2193	2193				1
DQHDTFFLR	Unmodified	1177.5516	0.55162144	2204	sp|Q9Y285-2|SYFA_HUMAN;sp|Q9Y285|SYFA_HUMAN	yes	no	0	0	0	0	0									1	34.211	34.211	3	0.029256	9547	20190902_JH_WT_Ubi_3	61.56	16.696	2119700	0	0	0	0	0	0	0	0	2119700			754	2204	659	2069	2194	2194				1
DQKLSELDDR	GlyGly (K)	1331.6317	0.63172225	1077	sp|Q15836|VAMP3_HUMAN;sp|P63027|VAMP2_HUMAN;sp|P23763-2|VAMP1_HUMAN;sp|P23763-3|VAMP1_HUMAN;sp|P23763|VAMP1_HUMAN	yes	no	0	0	1	0	1			1					1	1	25.301	25.301	3	0.0021636	6542	20190902_JH_WT_Ubi_3	110.08	64.075	47499000	0	0	13558000	0	0	0	0	19893000	14048000			755	1077	660	2070;2071;2072	2195;2196;2197	2197		1067		3
DQLIYNLLKEEQTPQNK	GlyGly (K)	2187.1172	0.11716161	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	41.669	41.669	3	6.1104E-14	11774	20190902_JH_MUT_Ubi_2	153.23	91.178	34025000	3292600	4140400	9469500	0	0	5465200	2843300	4510600	4303800			756	373	661	2073;2074;2075;2076;2077;2078;2079	2198;2199;2200;2201;2202;2203;2204	2200		333		7
DQLVVFHTK	Unmodified	1085.5869	0.58694431	317	sp|O94832|MYO1D_HUMAN	yes	yes	0	0	0	0	0						1				30.068	30.068	2	0.030053	7374	20190902_JH_MUT_Ubi_2	74.165	31.301	242970	0	0	0	0	0	242970	0	0	0			757	317	662	2080	2205	2205				0
DQMQMKETQPKELEK	Oxidation (M);2 GlyGly (K)	2105.9722	0.97215363	85	sp|A6NE01|F186A_HUMAN	yes	yes	0	0	2	1	2	1									21.174	21.174	4	0.022463	3565	20190821_JH_EV_Ubi	54.871	17.622	21959000	21959000	0	0	0	0	0	0	0	0			758	85	663	2081	2206	2206		77;78	43	0
DQNYPGAIAIHHPNVAEK	Unmodified	1972.9755	0.97552317	10	CON__P15636	yes	yes	0	0	0	0	0		1	1	1	1	1	1	1		28.455	28.455	3;4	1.5056E-06	5860	20190821_JH_WT_Ubi	119.96	82.411	175430000	0	3541200	83430000	4383400	13242000	8759100	3480700	58596000	0		+	759	10	664	2082;2083;2084;2085;2086;2087;2088	2207;2208;2209;2210;2211;2212;2213	2212				7
DQPQHLEKIAYQQK	GlyGly (K)	1838.9275	0.92751034	1472	sp|Q6IQ23-3|PKHA7_HUMAN;sp|Q6IQ23|PKHA7_HUMAN;sp|Q6IQ23-2|PKHA7_HUMAN	yes	no	0	0	1	0	1		1								24.93	24.93	3	0.020271	4171	20190821_JH_MUT_Ubi	63.181	25.63	782610	0	782610	0	0	0	0	0	0	0			760	1472	665	2089	2214	2214		1484		1
DQQEAALVDMVNDGVEDLR	Unmodified	2115.9743	0.97426212	484	sp|P09211|GSTP1_HUMAN	yes	yes	0	0	0	0	0								1		52.462	52.462	3	6.3308E-14	15617	20190902_JH_WT_Ubi_2	144.74	92.324	853000	0	0	0	0	0	0	0	853000	0			761	484	666	2090	2215	2215				1
DQQKDAEAEGLSGTTLLPK	GlyGly (K)	2114.0491	0.049141622	2139	sp|Q9UI14|PRAF1_HUMAN	yes	yes	0	0	1	0	1		1								35.964	35.964	3	0.014171	8095	20190821_JH_MUT_Ubi	56.149	16.036	855960	0	855960	0	0	0	0	0	0	0			762	2139	667	2091	2216	2216		2009;2010		1
DQTKAQAAAPASVPAQAPK	GlyGly (K)	1963.0123	0.012302606	867	sp|P47914|RL29_HUMAN	yes	yes	0	0	1	0	1								1		25.532	25.532	3	0.011022	6844	20190902_JH_WT_Ubi_2	58.997	19.488	1777200	0	0	0	0	0	0	0	1777200	0			763	867	668	2092	2217	2217		847		1
DQVTAQEIFQDNHEDGPTAK	Unmodified	2242.0138	0.013818748	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	34.116	34.116	3	4.4286E-05	9455	20190902_JH_WT_Ubi_3	97.129	72.72	37208000	2516100	0	8722300	2318600	2431500	0	0	9786600	11433000			764	542	669	2093;2094;2095;2096;2097;2098	2218;2219;2220;2221;2222;2223	2223				6
DQYSHLLSDHFLPYQGHNSFR	Unmodified	2560.1884	0.18836949	1532	sp|Q7Z4G4-2|TRM11_HUMAN;sp|Q7Z4G4|TRM11_HUMAN	yes	no	0	0	0	0	0			1					1		37.997	37.997	4	0.0065369	9114	20190821_JH_WT_Ubi	55.707	9.3503	7899900	0	0	4538800	0	0	0	0	3361000	0			765	1532	670	2099;2100	2224;2225	2224				2
DRDHFQLGTLSHTLNIK	Unmodified	1994.0334	0.033372399	115	sp|O00203-3|AP3B1_HUMAN;sp|O00203|AP3B1_HUMAN	yes	no	0	0	0	0	1								1		34.586	34.586	4	0.029998	10002	20190902_JH_WT_Ubi_2	57.703	13.571	2673700	0	0	0	0	0	0	0	2673700	0			766	115	671	2101	2226	2226				0
DRFNHFSLTLNTNHGHILVDYSK	Unmodified	2727.3517	0.35174642	437	sp|P06744|G6PI_HUMAN;sp|P06744-2|G6PI_HUMAN	yes	no	0	0	0	0	1			1							35.319	35.319	5	0.036176	8139	20190821_JH_WT_Ubi	28.454	11.587	4272300	0	0	4272300	0	0	0	0	0	0			767	437	672	2102	2227	2227				1
DRLPLAVVGSNTIIEVNGK	Deamidation (NQ)	1995.1001	0.10005498	1373	sp|Q16181-2|SEPT7_HUMAN;sp|Q16181|SEPT7_HUMAN	yes	no	0	1	0	0	1			1					1		44.895	44.895	3	7.9868E-09	11965	20190821_JH_WT_Ubi	132.51	107.59	5923900	0	0	4562600	0	0	0	0	1361300	0			768	1373	673	2103;2104	2228;2229	2228	438			2
DSDEADLVLAKEANMK	Oxidation (M);GlyGly (K)	1877.8677	0.86767178	1222	sp|Q13185|CBX3_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	33.198	33.198	3	5.769E-05	7999	20190902_JH_MUT_Ubi_3	111.66	81.68	40598000	4449600	2703000	4197200	4119500	5967100	4374800	4126700	4974600	5684900			769	1222	674	2105;2106;2107;2108;2109;2110;2111;2112;2113	2230;2231;2232;2233;2234;2235;2236;2237;2238	2235		1284;1285	769	9
DSDSMETEEKTSSAFVGK	Oxidation (M);GlyGly (K)	2076.8794	0.87935868	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	1	1	1			1	1	1	1	1	1	1	26.873	26.873	3	3.9789E-20	5938	20190902_JH_EV_Ubi_2	166.04	129.69	30213000	0	0	3096100	5885400	3310000	2676800	2557700	7782800	4903800			770	1833	675	2114;2115;2116;2117;2118;2119;2120	2239;2240;2241;2242;2243;2244;2245	2239		1792;1793	1010	7
DSDSMETEEKTSSAFVGK	GlyGly (K)	2060.8844	0.88444406	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	1	0	1							1			29.758	29.758	3	0.026358	6937	20190902_JH_MUT_Ubi_3	49.343	30.871	1512500	0	0	0	0	0	0	1512500	0	0			771	1833	675	2121	2246	2246		1792;1793		1
DSGAALGLGIALHSPCYAQVR	Unmodified	2155.0844	0.084421692	1879	sp|Q9BUM1|G6PC3_HUMAN	yes	yes	0	0	0	0	0			1							42.796	42.796	3	6.7278E-06	11120	20190821_JH_WT_Ubi	93.768	51.386	4295700	0	0	4295700	0	0	0	0	0	0			772	1879	676	2122	2247	2247				1
DSGLYKELLHK	GlyGly (K)	1415.7409	0.74087877	1693	sp|Q8WUM9|S20A1_HUMAN	yes	yes	0	0	1	0	1	1		1			1		1	1	30.821	30.821	3	0.00039246	6585	20190821_JH_WT_Ubi	132.32	42.269	58568000	0	0	14197000	0	0	6428400	0	21201000	16742000			773	1693	677	2123;2124;2125;2126;2127	2248;2249;2250;2251;2252	2250		1684		5
DSGNKPPGLLPR	Unmodified	1249.6779	0.67788459	2210	sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN	yes	no	0	0	0	0	1								1	1	27.705	27.705	3	0.0083484	7602	20190902_JH_WT_Ubi_2	107.11	50.567	7817000	0	0	0	0	0	0	0	4444800	3372100			774	2210	678	2128;2129	2253;2254	2253				2
DSGYPETLVNLIVLSQHLGKPPEVTNR	GlyGly (K)	3089.6146	0.61456263	143	sp|O14579|COPE_HUMAN;sp|O14579-2|COPE_HUMAN	yes	no	0	0	1	0	1			1							51.851	51.851	4	0.016993	14635	20190821_JH_WT_Ubi	40.706	22.763	3931300	0	0	3931300	0	0	0	0	0	0			775	143	679	2130	2255	2255		120		1
DSHGVAQVR	Unmodified	967.48354	0.48354187	1046	sp|P62277|RS13_HUMAN	yes	yes	0	0	0	0	0			1							16.174	16.174	2	0.020446	2939	20190821_JH_WT_Ubi	82.279	32.152	2915600	0	0	2915600	0	0	0	0	0	0			776	1046	680	2131	2256	2256				0
DSHIFQLFWR	Unmodified	1347.6724	0.67240528	1458	sp|Q63HN8|RN213_HUMAN;sp|Q63HN8-4|RN213_HUMAN	yes	no	0	0	0	0	0			1					1		47.61	47.61	3	0.0019564	14376	20190902_JH_WT_Ubi_2	107.79	17.079	4289100	0	0	2861000	0	0	0	0	1428100	0			777	1458	681	2132;2133	2257;2258	2258				2
DSHLTLLNQLLQGLR	Unmodified	1719.9632	0.96316757	2018	sp|Q9NRX2|RM17_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	53.419	53.419	3	4.591E-37	15166	20190821_JH_WT_Ubi	195.71	130.14	25602000	0	4431100	11429000	0	0	1198000	762750	3800700	3981000			778	2018	682	2134;2135;2136;2137;2138;2139	2259;2260;2261;2262;2263;2264	2262				6
DSHSSEEDEASSQTDLSQTISKK	GlyGly (K)	2622.1529	0.152891	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN;sp|Q5JTV8-2|TOIP1_HUMAN	yes	no	0	0	1	0	1	1		1	2				2	2	26.115	26.115	3;4	5.7895E-37	5033	20190821_JH_EV_Ubi	178.56	149.42	28546000	825580	0	4430100	2763400	0	0	0	12365000	8161300			779	1430	683	2140;2141;2142;2143;2144;2145;2146;2147	2265;2266;2267;2268;2269;2270;2271;2272	2265		1446;1447		8
DSKSKLLQTSVSVHPDAIEK	3 GlyGly (K);Deamidation (NQ)	2524.2769	0.27690973	1609	sp|Q8N336-3|ELMD1_HUMAN;sp|Q8N336|ELMD1_HUMAN	yes	no	0	1	3	0	2				1						39.077	39.077	3	0.030808	9739	20190902_JH_EV_Ubi_2	47.082	11.23	0	0	0	0	0	0	0	0	0	0			780	1609	684	2148	2273	2273	1134			1
DSLAEVEEK	Unmodified	1018.4819	0.48187012	1404	sp|Q32MZ4-4|LRRF1_HUMAN;sp|Q32MZ4-3|LRRF1_HUMAN;sp|Q32MZ4-2|LRRF1_HUMAN;sp|Q32MZ4|LRRF1_HUMAN	yes	no	0	0	0	0	0			1							27.082	27.082	2	0.01776	5416	20190821_JH_WT_Ubi	85.862	17.016	1250300	0	0	1250300	0	0	0	0	0	0			781	1404	685	2149	2274	2274				0
DSLLTHIQNLK	Unmodified	1280.7089	0.70885036	2243	sp|Q9Y5L0-5|TNPO3_HUMAN;sp|Q9Y5L0-3|TNPO3_HUMAN;sp|Q9Y5L0|TNPO3_HUMAN;sp|Q9Y5L0-1|TNPO3_HUMAN	yes	no	0	0	0	0	0	1		1							37.518	37.518	3	0.028199	9271	20190821_JH_EV_Ubi	58.676	27.08	5000500	1895600	0	3104800	0	0	0	0	0	0			782	2243	686	2150;2151	2275;2276	2275				2
DSLSDDGVDLKTQPVR	GlyGly (K)	1857.9068	0.90683448	459	sp|P07948|LYN_HUMAN	yes	yes	0	0	1	0	1								1		32.317	32.317	3	0.0032218	9180	20190902_JH_WT_Ubi_2	78.814	31.625	3935100	0	0	0	0	0	0	0	3935100	0			783	459	687	2152	2277	2277		463		1
DSNNLCLHFNPR	Unmodified	1485.6783	0.67829529	486	sp|P09382|LEG1_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1		1	1	32.588	32.588	3	0.0057114	9309	20190902_JH_WT_Ubi_2	86.463	57.218	586370000	7190900	23916000	173200000	0	0	29286000	0	175870000	176910000			784	486	688	2153;2154;2155;2156;2157;2158	2278;2279;2280;2281;2282;2283	2282				6
DSPYMAFIHPATGGYNPDLVR	Unmodified	2320.0947	0.094652027	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0									1	45.18	45.18	3	0.010662	13216	20190902_JH_WT_Ubi_3	51.786	12.898	1642200	0	0	0	0	0	0	0	0	1642200			785	282	689	2159	2284	2284				1
DSRPKLPQTLSR	GlyGly (K)	1510.8216	0.82158871	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	1	0	2		1				1	1			24.437	24.437	3	3.6887E-07	4131	20190821_JH_MUT_Ubi	156.01	119.33	59808000	0	11073000	0	0	0	30686000	18049000	0	0			786	367	690	2160;2161;2162	2285;2286;2287	2285		328		3
DSSGQHVDVSPTSQR	Unmodified	1598.7285	0.72847619	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0			1					1	1	21.424	21.424	3	0.00030762	3984	20190821_JH_WT_Ubi	106.58	44.239	10264000	0	0	6013800	0	0	0	0	0	4250200			787	1847	691	2163;2164;2165	2288;2289;2290	2288				3
DSSHAFTLDELR	Unmodified	1389.6525	0.6524577	471	sp|P08582|TRFM_HUMAN	yes	yes	0	0	0	0	0			1					1	1	36.242	36.242	3	0.0010729	8439	20190821_JH_WT_Ubi	109.24	18.409	18446000	0	0	5284800	0	0	0	0	5909600	7251800			788	471	692	2166;2167;2168	2291;2292;2293	2291				3
DSTGHVGFIFK	Unmodified	1206.6033	0.60332266	132	sp|O00560|SDCB1_HUMAN;sp|O00560-2|SDCB1_HUMAN;sp|O00560-3|SDCB1_HUMAN	yes	no	0	0	0	0	0			1					1	1	34.639	34.639	3	0.010502	9607	20190902_JH_WT_Ubi_3	79.489	45.745	28313000	0	0	7431300	0	0	0	0	10462000	10420000			789	132	693	2169;2170;2171	2294;2295;2296	2296				3
DSTTQKAGLPSK	GlyGly (K)	1345.6838	0.68375782	182	sp|O15374-4|MOT5_HUMAN;sp|O15374-2|MOT5_HUMAN;sp|O15374-5|MOT5_HUMAN;sp|O15374|MOT5_HUMAN	yes	no	0	0	1	0	1			1					1	1	20.457	20.457	3	0.0011182	5184	20190902_JH_WT_Ubi_2	111.12	61.622	21304000	0	0	4392800	0	0	0	0	8135200	8776100			790	182	694	2172;2173;2174	2297;2298;2299	2298		155;157		3
DSYLILETLPTEYDSR	Unmodified	1913.9258	0.92583859	606	sp|P17980|PRS6A_HUMAN	yes	yes	0	0	0	0	0								1		52.237	52.237	2	2.887E-16	15546	20190902_JH_WT_Ubi_2	155.47	113.23	1036600	0	0	0	0	0	0	0	1036600	0			791	606	695	2175	2300	2300				0
DSYVGDEAQSK	Unmodified	1197.515	0.51496116	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	0	0	0				1						22.431	22.431	2	0.021136	4768	20190902_JH_EV_Ubi_2	65.627	31.83	107430000	0	0	0	107430000	0	0	0	0	0			792	1000;1087;1094	696	2176	2301	2301				0
DSYVGDEAQSKR	GlyGly (K)	1467.659	0.65899964	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1				20.239	20.239	3	0.00014737	3169	20190821_JH_MUT_Ubi	131.17	78.926	33305000	3403400	3059000	7706100	6860800	5251800	7023500	0	0	0			793	1000;1087;1094	697	2177;2178;2179;2180;2181;2182	2302;2303;2304;2305;2306;2307	2305		980		6
DTAKSLQPLAPR	GlyGly (K)	1409.7627	0.76267685	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	1	0	1		1				1	1			27.706	27.706	3	0.00027045	5163	20190821_JH_MUT_Ubi	125.23	76.949	7131500	0	1654400	0	0	0	2312400	3164800	0	0			794	1306	698	2183;2184;2185	2308;2309;2310	2308		1367		3
DTDEADLVLAKEANVK	GlyGly (K)	1843.9163	0.91633654	848	sp|P45973|CBX5_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1			1		36.102	36.102	3	6.9372E-19	8844	20190821_JH_EV_Ubi	163.33	84.628	21245000	6384600	5817400	0	4147800	4894900	0	0	0	0			795	848	699	2186;2187;2188;2189;2190	2311;2312;2313;2314;2315;2316	2312		823		6
DTDWVVVKEPVIK	GlyGly (K)	1640.8774	0.87737225	1875	sp|Q9BTU6|P4K2A_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			39.042	39.042	3	5.3736E-12	9290	20190821_JH_MUT_Ubi	160.52	125.45	23990000	3709400	5086100	0	2845400	2759900	6740000	2849500	0	0			796	1875	700	2191;2192;2193;2194;2195;2196	2317;2318;2319;2320;2321;2322	2320		1819		6
DTEDGSAWKQDPFQESGLHLSPTAAEAK	GlyGly (K)	3128.4323	0.43230075	1355	sp|Q15599-3|NHRF2_HUMAN;sp|Q15599|NHRF2_HUMAN	yes	no	0	0	1	0	1							1			39.138	39.138	4	0.010073	10071	20190902_JH_MUT_Ubi_3	44.711	26.962	2649700	0	0	0	0	0	0	2649700	0	0			797	1355	701	2197	2323	2323		1401		1
DTEENLHVLNQTLAEVLFPMDNKMDK	3 Deamidation (NQ)	3046.4151	0.41511905	1225	sp|Q13201|MMRN1_HUMAN	yes	yes	0	3	0	0	1				1						51.034	51.034	3	0.03101	12243	20190902_JH_EV_Ubi_2	41.482	12.591	0	0	0	0	0	0	0	0	0	0			798	1225	702	2198	2324	2324	401;402;1012			1
DTEPLIQTAK	Unmodified	1114.587	0.58700389	875	sp|P48643-2|TCPE_HUMAN;sp|P48643|TCPE_HUMAN	yes	no	0	0	0	0	0								1		30.174	30.174	2	0.036609	8401	20190902_JH_WT_Ubi_2	62.823	22.25	5414100	0	0	0	0	0	0	0	5414100	0			799	875	703	2199	2325	2325				0
DTEQVDNWMSK	Oxidation (M)	1367.5663	0.5663448	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	1	0								1		28.93	28.93	2	0.036285	7986	20190902_JH_WT_Ubi_2	50.473	19.676	1314100	0	0	0	0	0	0	0	1314100	0			800	1262	704	2200	2326	2326				0
DTGIFLDLMHLK	Oxidation (M)	1417.7275	0.72753689	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	0	0	1	0		1	1			1		1		44.743	44.743	3	0.011982	13468	20190902_JH_WT_Ubi_2	76.332	36.547	8489000	0	1241800	2632600	0	0	1824900	0	2789800	0			801	541	705	2201;2202;2203;2204	2327;2328;2329;2330	2330			322	4
DTGIFLDLMHLK	Unmodified	1401.7326	0.73262227	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	0	0	0	0			1							50.64	50.64	3	0.027774	14236	20190821_JH_WT_Ubi	57.225	15.745	1495700	0	0	1495700	0	0	0	0	0	0			802	541	705	2205	2331	2331				1
DTGKTPVEPEVAIHR	GlyGly (K)	1761.901	0.90096124	1002	sp|P60866|RS20_HUMAN;sp|P60866-2|RS20_HUMAN	yes	no	0	0	1	0	1	2	1	1	1	1	1	1	1	1	26.711	26.711	3;4	8.1075E-05	6932	20190902_JH_WT_Ubi_3	113.35	74.901	1227900000	98832000	50897000	152930000	96045000	79127000	163260000	91632000	290690000	204510000			803	1002	706	2206;2207;2208;2209;2210;2211;2212;2213;2214;2215	2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342	2342		991		10
DTHDQLSEPSEVR	Unmodified	1511.6852	0.68521439	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1	1				1	1	24.731	24.731	3	0.00035596	4781	20190821_JH_WT_Ubi	113.24	45.855	34347000	0	0	9731900	1148200	0	0	0	12643000	10824000			804	1332	707	2216;2217;2218;2219	2343;2344;2345;2346	2344				4
DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK	Unmodified	3932.7097	0.7096574	844	sp|P43487-2|RANG_HUMAN;sp|P43487|RANG_HUMAN	yes	no	0	0	0	0	0								1		38.977	38.977	4	0.034532	11505	20190902_JH_WT_Ubi_2	21.303	0.56902	2197700	0	0	0	0	0	0	0	2197700	0			805	844	708	2220	2347	2347				1
DTHPKFPAGGK	GlyGly (K)	1267.6309	0.63093439	375	sp|P00387-2|NB5R3_HUMAN;sp|P00387|NB5R3_HUMAN;sp|P00387-3|NB5R3_HUMAN	yes	no	0	0	1	0	1				1						18.351	18.351	3	0.014469	3845	20190902_JH_EV_Ubi_2	80.102	14.796	3021700	0	0	0	3021700	0	0	0	0	0			806	375	709	2221	2348	2348		338		1
DTILHDNLKQLMLQ	GlyGly (K)	1794.9298	0.92981853	1291	sp|Q14344-2|GNA13_HUMAN;sp|Q14344|GNA13_HUMAN	yes	no	0	0	1	0	1		1	1							44.442	44.442	3	0.022625	11746	20190821_JH_WT_Ubi	61.641	17.025	6384200	0	1170000	5214200	0	0	0	0	0	0			807	1291	710	2222;2223	2349;2350	2350		1354		2
DTLENTIGHR	Unmodified	1154.568	0.56799978	825	sp|P42126-2|ECI1_HUMAN;sp|P42126|ECI1_HUMAN	yes	no	0	0	0	0	0			1							25.355	25.355	3	0.017104	4947	20190821_JH_WT_Ubi	71.349	26.954	2052300	0	0	2052300	0	0	0	0	0	0			808	825	711	2224	2351	2351				1
DTLSNPQSPQPSPYNSPKPQHK	GlyGly (K)	2560.2306	0.23062824	1808	sp|Q96PU5-9|NED4L_HUMAN;sp|Q96PU5-4|NED4L_HUMAN;sp|Q96PU5-2|NED4L_HUMAN;sp|Q96PU5-6|NED4L_HUMAN;sp|Q96PU5-5|NED4L_HUMAN;sp|Q96PU5-7|NED4L_HUMAN;sp|Q96PU5|NED4L_HUMAN;sp|Q96PU5-3|NED4L_HUMAN	yes	no	0	0	1	0	1	2	1				1	1			24.565	24.565	3;4	1.5494E-08	4574	20190821_JH_EV_Ubi	115.26	91.625	9455100	2903300	1932700	0	0	0	2161500	2457600	0	0			809	1808	712	2225;2226;2227;2228;2229	2352;2353;2354;2355;2356	2352		1769;1770		5
DTMDNWDEKKLEEVVNK	Oxidation (M);Deamidation (NQ)	2108.9572	0.95721507	1691	sp|Q8WU90|ZC3HF_HUMAN	yes	yes	0	1	0	1	2			1							32.593	32.593	3	0.035355	7119	20190821_JH_WT_Ubi	48.391	20.18	0	0	0	0	0	0	0	0	0	0			810	1691	713	2230	2357	2357	551			1
DTNGSQFFITTVK	Deamidation (NQ)	1457.7038	0.70382456	660	sp|P23284|PPIB_HUMAN	yes	yes	0	1	0	0	0			1					1		43.563	43.563	2	1.7984E-09	11358	20190821_JH_WT_Ubi	174.21	115.58	15554000	0	0	6529500	0	0	0	0	9024900	0			811	660	714	2231;2232	2358;2359	2358	238			1
DTSENADGQSDENKDDYTIPDEYR	GlyGly (K)	2890.1649	0.16491225	841	sp|P43243|MATR3_HUMAN;sp|P43243-2|MATR3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	32.869	32.869	3	2.9666E-17	7240	20190821_JH_WT_Ubi	144.3	130.41	55329000	4572600	3163700	7026600	3751600	3850200	4035100	3426000	14674000	10829000			812	841	715	2233;2234;2235;2236;2237;2238;2239;2240;2241	2360;2361;2362;2363;2364;2365;2366;2367;2368	2366		816		9
DTSFEQHVLWHTGGK	Unmodified	1740.822	0.82198264	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0							1		1	31.355	31.355	3	0.006793	7410	20190902_JH_MUT_Ubi_3	70.889	37.693	5512300	0	0	0	0	0	0	1437400	0	4074900			813	881	716	2242;2243	2369;2370	2369				2
DTSSEEVNLSHIVPCEPVPEEKPK	GlyGly (K)	2833.344	0.34400301	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	1	1		1	1	1	1	1			36.789	36.789	3;4	2.7052E-06	9917	20190902_JH_MUT_Ubi_2	90.308	54.979	24356000	6047500	0	6023400	4967300	1409900	1288000	4619500	0	0			814	1603	717	2244;2245;2246;2247;2248;2249	2371;2372;2373;2374;2375;2376	2374		1598;1599		6
DTTSDKDDSLGSQQTNEQCAQK	GlyGly (K)	2569.0834	0.083431231	664	sp|P23497-7|SP100_HUMAN;sp|P23497-6|SP100_HUMAN;sp|P23497-5|SP100_HUMAN;sp|P23497-2|SP100_HUMAN;sp|P23497-3|SP100_HUMAN;sp|P23497|SP100_HUMAN;sp|P23497-4|SP100_HUMAN	yes	no	0	0	1	0	1	1									21.923	21.923	3	1.2821E-47	3817	20190821_JH_EV_Ubi	193.47	171.36	1051400	1051400	0	0	0	0	0	0	0	0			815	664	718	2250	2377	2377		634		0
DTYHPMSEYPTYHTHGR	Oxidation (M)	2106.8854	0.88538753	579	sp|P15941-12|MUC1_HUMAN;sp|P15941-16|MUC1_HUMAN;sp|P15941-9|MUC1_HUMAN;sp|P15941-10|MUC1_HUMAN;sp|P15941-15|MUC1_HUMAN;sp|P15941-6|MUC1_HUMAN;sp|P15941-7|MUC1_HUMAN;sp|P15941-11|MUC1_HUMAN;sp|P15941-8|MUC1_HUMAN;sp|P15941-4|MUC1_HUMAN;sp|P15941-3|MUC1_HUMAN;sp|P15941|MUC1_HUMAN;sp|P15941-2|MUC1_HUMAN;sp|P15941-17|MUC1_HUMAN	yes	no	0	0	0	1	0				1	1			1	1	21.769	21.769	4	0.023611	4542	20190902_JH_EV_Ubi_3	47.639	29.549	18895000	0	0	0	3849400	1930800	0	0	7033500	6081400			816	579	719	2251;2252;2253;2254	2378;2379;2380;2381	2379			363	4
DTYLSHFNPR	Unmodified	1248.5887	0.58873523	810	sp|P40261|NNMT_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	31.298	31.298	3	0.0058628	8463	20190902_JH_WT_Ubi_3	94.409	55.605	225530000	20555000	0	38839000	20290000	19672000	0	0	66679000	59491000			817	810	720	2255;2256;2257;2258;2259;2260	2382;2383;2384;2385;2386;2387	2387				6
DVAEQLEKIYGSDR	GlyGly (K)	1735.8377	0.83769228	259	sp|O60762|DPM1_HUMAN	yes	yes	0	0	1	0	1	1	1								40.504	40.504	3	0.014066	10361	20190821_JH_EV_Ubi	69.314	23.525	2916800	1946600	970170	0	0	0	0	0	0	0			818	259	721	2261;2262	2388;2389	2388		246		2
DVAIKEPLVDVVDPK	GlyGly (K)	1749.9513	0.95126548	1852	sp|Q99873-2|ANM1_HUMAN;sp|Q99873-3|ANM1_HUMAN;sp|Q99873|ANM1_HUMAN	yes	no	0	0	1	0	1				1	1			1	1	40.643	40.643	3	0.00054342	11680	20190902_JH_WT_Ubi_3	104.94	78.398	7670300	0	0	0	1196000	1038900	0	0	2553200	2882200			819	1852	722	2263;2264;2265;2266	2390;2391;2392;2393	2393		1808		4
DVDAAYMNK	Unmodified	1025.4488	0.44879585	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446	no	no	0	0	0	0	0								1		27.231	27.231	2	0.027996	7386	20190902_JH_WT_Ubi_2	128.61	21.313	8568500	0	0	0	0	0	0	0	8568500	0		+	820	3	723	2267	2394	2394				0
DVDEAYMNK	Oxidation (M)	1099.4492	0.44918978	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931;CON__Q9H552	yes	no	0	0	0	1	0			1							26.469	26.469	2	0.025957	5331	20190821_JH_WT_Ubi	59.35	11.501	2291500	0	0	2291500	0	0	0	0	0	0		+	821	6	724	2268	2395	2395			5	0
DVDIIDHHDNTYTVK	Unmodified	1783.8377	0.83769228	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0			1		1			1	1	29.947	29.947	3	0.0037235	6363	20190821_JH_WT_Ubi	77.146	35.179	32711000	0	0	12080000	0	2384100	0	0	0	18247000			822	637	725	2269;2270;2271;2272	2396;2397;2398;2399	2397				4
DVEMGNSVIEENEMKK	2 Oxidation (M);GlyGly (K)	1996.8718	0.87177088	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	2	1	1	1	1	1	1	1	1	1	1	24.859	24.859	3	0.00013827	5298	20190902_JH_EV_Ubi_2	105.19	84.454	199480000	23524000	2336900	12049000	62581000	40730000	4283100	4085200	25943000	23944000			823	836	726	2273;2274;2275;2276;2277;2278;2279;2280;2281	2400;2401;2402;2403;2404;2405;2406;2407;2408	2401		803;804	528;529	9
DVEMGNSVIEENEMKK	Oxidation (M);GlyGly (K)	1980.8769	0.87685626	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	1	1	1		1	1	1	1	1	1	1	27.708	27.708	3	0.00077662	5606	20190821_JH_WT_Ubi	94.339	53.356	44489000	6747400	0	7679900	5772300	2674800	1523800	1982800	8125100	9982500			824	836	726	2282;2283;2284;2285;2286;2287;2288;2289	2409;2410;2411;2412;2413;2414;2415;2416	2414		803;804	528;529	8
DVEMGNSVIEENEMKK	GlyGly (K)	1964.8819	0.88194164	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	0	1	1		1					1		31.601	31.601	3	0.0092523	6779	20190821_JH_WT_Ubi	70.281	30.772	20301000	4813500	0	6928400	0	0	0	0	8558900	0			825	836	726	2290;2291;2292	2417;2418;2419;2420	2418		803;804		4
DVESSLKIEEVDGLELVRK	2 GlyGly (K)	2385.2387	0.23873331	1530	sp|Q7Z3S7-2|CA2D4_HUMAN;sp|Q7Z3S7-4|CA2D4_HUMAN;sp|Q7Z3S7-6|CA2D4_HUMAN;sp|Q7Z3S7|CA2D4_HUMAN;sp|Q7Z3S7-5|CA2D4_HUMAN	yes	no	0	0	2	0	2									1	37.842	37.842	3	0.015971	10788	20190902_JH_WT_Ubi_3	73.597	18.643	10301000	0	0	0	0	0	0	0	0	10301000			826	1530	727	2293	2421	2421		1522;1523		0
DVFHMVVEVPR	Oxidation (M)	1342.6704	0.67035637	1334	sp|Q15181|IPYR_HUMAN	yes	yes	0	0	0	1	0			1		1	1	1	1	1	37.007	37.007	3	0.0023512	9203	20190902_JH_EV_Ubi_3	105.4	58.691	24366000	0	0	4366300	0	1783100	3033100	1925300	5091300	8167400			827	1334	728	2294;2295;2296;2297;2298;2299	2422;2423;2424;2425;2426;2427	2422			834	6
DVFHMVVEVPR	Unmodified	1326.6754	0.67544174	1334	sp|Q15181|IPYR_HUMAN	yes	yes	0	0	0	0	0			1							42.32	42.32	3	0.00010267	10917	20190821_JH_WT_Ubi	140.78	82.15	7250900	0	0	7250900	0	0	0	0	0	0			828	1334	728	2300	2428	2428				1
DVFHTTVNFINQNLR	Unmodified	1816.922	0.92203104	985	sp|P55957-4|BID_HUMAN;sp|P55957|BID_HUMAN;sp|P55957-2|BID_HUMAN	yes	no	0	0	0	0	0		1		1	1	1	1		1	46.942	46.942	3	2.7597E-05	11748	20190902_JH_EV_Ubi_2	120.6	72.136	7859800	0	1739500	0	757420	2408700	906440	790860	0	1256800			829	985	729	2301;2302;2303;2304;2305;2306	2429;2430;2431;2432;2433;2434	2429				6
DVFNKGYGFGMVK	Oxidation (M);GlyGly (K)	1590.7501	0.75006325	2202	sp|Q9Y277|VDAC3_HUMAN;sp|Q9Y277-2|VDAC3_HUMAN	yes	no	0	0	1	1	1		1	1	1	1	1	1	1	1	34.04	34.04	3	0.00022086	9463	20190902_JH_WT_Ubi_3	122.33	81.084	45036000	0	2367500	5196500	3320300	3427500	5853500	5360200	9901000	9609700			830	2202	730	2307;2308;2309;2310;2311;2312;2313;2314	2435;2436;2437;2438;2439;2440;2441;2442	2442		2057	1142	8
DVGAQILLHSHK	Unmodified	1316.7201	0.72008375	1795	sp|Q96KP4-2|CNDP2_HUMAN;sp|Q96KP4|CNDP2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1		1	27.926	27.926	3	0.0019467	5707	20190821_JH_WT_Ubi	103.34	25.963	108360000	0	3525900	33659000	0	0	5236600	8097500	0	57837000			831	1795	731	2315;2316;2317;2318;2319	2443;2444;2445;2446;2447	2446				5
DVHNIYGLYVHMATADGLR	Unmodified	2144.0473	0.047307904	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	0			1					1	1	43.173	43.173	4	0.00010177	11240	20190821_JH_WT_Ubi	94.281	60.657	16641000	0	0	9772900	0	0	0	0	3354000	3513900			832	1304	732	2320;2321;2322	2448;2449;2450	2448				3
DVHNIYGLYVHMATADGLR	Oxidation (M)	2160.0422	0.042222526	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	1	0								1	1	37.766	37.766	4	0.0061061	11122	20190902_JH_WT_Ubi_2	61.096	34.367	13573000	0	0	0	0	0	0	0	5884900	7687800			833	1304	732	2323;2324	2451;2452	2451			814	2
DVIEEYFKCK	GlyGly (K)	1443.6704	0.67041595	677	sp|P25398|RS12_HUMAN	yes	yes	0	0	1	0	1					1					36.215	36.215	2	0.023047	8944	20190902_JH_EV_Ubi_3	89.029	44.72	6419800	0	0	0	0	6419800	0	0	0	0			834	677	733	2325	2453	2453		659		1
DVILDEKSITGEEMSDIYVK	GlyGly (K)	2397.1621	0.16212247	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN;sp|Q9NZM1-5|MYOF_HUMAN	yes	no	0	0	1	0	1		1				1				43.657	43.657	3	0.0042523	12495	20190902_JH_MUT_Ubi_2	65.287	35.136	3831700	0	2696100	0	0	0	1135600	0	0	0			835	2073	734	2326;2327	2454;2455	2455		1954		2
DVKGSYVSIHSSGFR	GlyGly (K)	1751.8591	0.85909643	1264	sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN	yes	no	0	0	1	0	1							1			27.416	27.416	4	0.018295	6172	20190902_JH_MUT_Ubi_3	58.116	32.794	3023100	0	0	0	0	0	0	3023100	0	0			836	1264	735	2328	2456	2456		1331		1
DVKLAEAHQQECCQK	GlyGly (K)	1956.8782	0.87819366	2248	sp|Q9Y5X3|SNX5_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			19.493	19.493	3	0.00098341	4030	20190902_JH_EV_Ubi_3	98.676	71.218	70463000	12960000	2445600	4966200	15781000	25883000	3296800	5130600	0	0			837	2248	736	2329;2330;2331;2332;2333;2334;2335	2457;2458;2459;2460;2461;2462;2463	2459		2085		7
DVKLPVQLQR	GlyGly (K)	1308.7514	0.75138388	693	sp|P27105|STOM_HUMAN	yes	yes	0	0	1	0	1							1			33.632	33.632	3	0.026622	8269	20190902_JH_MUT_Ubi_3	69.276	28.282	1046200	0	0	0	0	0	0	1046200	0	0			838	693	737	2336	2464	2464		679		1
DVKNAGDLR	GlyGly (K)	1100.5574	0.5574351	2221	sp|Q9Y3C4|TPRKB_HUMAN;sp|Q9Y3C4-3|TPRKB_HUMAN	yes	no	0	0	1	0	1	1									18.657	18.657	3	0.028952	3141	20190821_JH_EV_Ubi	69.423	29.801	1511300	1511300	0	0	0	0	0	0	0	0			839	2221	738	2337	2465	2465		2068		1
DVKPSNILVNSR	GlyGly (K)	1454.7841	0.78414057	1141	sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN;sp|P36507|MP2K2_HUMAN	yes	no	0	0	1	0	1	1	1		1						29.761	29.761	3	0.0057578	6361	20190821_JH_EV_Ubi	92.781	54.76	5202300	1519800	1271000	0	2411400	0	0	0	0	0			840	1141	739	2338;2339;2340	2466;2467;2468	2466		1136		3
DVLFLKDCVGPEVEK	GlyGly (K)	1860.9291	0.92914983	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	0	1		1				1	1			39.954	39.954	3	0.00029408	11198	20190902_JH_MUT_Ubi_2	108.66	73.002	3527800	0	0	0	0	0	2041400	1486300	0	0			841	383	740	2341;2342;2343	2469;2470;2471	2470		345;346		3
DVLTSTYGATAETLSTSTTTHVTK	Unmodified	2484.2231	0.22314282	1953	sp|Q9H4G0|E41L1_HUMAN;sp|Q9H4G0-4|E41L1_HUMAN;sp|Q9H4G0-2|E41L1_HUMAN;sp|Q9H4G0-3|E41L1_HUMAN	yes	no	0	0	0	0	0			1					1		39.52	39.52	3	0.011347	9688	20190821_JH_WT_Ubi	47.814	10.142	8358100	0	0	6052500	0	0	0	0	2305600	0			842	1953	741	2344;2345	2472;2473	2472				2
DVMQNHLLQMLCLVAMEK	Oxidation (M)	2188.0513	0.051272349	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	0	0	1	0			1							53.789	53.789	3	0.0056396	15349	20190821_JH_WT_Ubi	65.949	32.252	2195100	0	0	2195100	0	0	0	0	0	0			843	525	742	2346	2474	2474			314;315	1
DVMQNHLLQMLCLVAMEK	2 Oxidation (M)	2204.0462	0.046186971	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	0	0	2	0								1		51.284	51.284	3	0.0013438	15326	20190902_JH_WT_Ubi_2	76.526	36.616	757420	0	0	0	0	0	0	0	757420	0			844	525	742	2347	2475	2475			314;315	1
DVNAAIATIK	Unmodified	1014.571	0.5709599	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	0	0									1	34.38	34.38	2	0.024921	9671	20190902_JH_WT_Ubi_3	75.229	35.583	135670000	0	0	0	0	0	0	0	0	135670000			845	1097;1515;1858	743	2348	2476	2476				0
DVNAAIATIKTK	GlyGly (K)	1357.7565	0.75652884	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	1	0	1					1	1	1			30.713	30.713	3	0.0016277	7214	20190902_JH_MUT_Ubi_3	108.68	56.518	7776900	0	0	0	0	1029400	4030700	2716700	0	0			846	1097;1515;1858	744	2349;2350;2351	2477;2478;2479	2479		1098		3
DVNTTIMELLIMVYACKTSCAK	2 Oxidation (M);GlyGly (K)	2706.2737	0.2736803	231	sp|O60256-3|KPRB_HUMAN;sp|O60256|KPRB_HUMAN	yes	no	0	0	1	2	1	1									41.346	41.346	3	0.024762	10693	20190821_JH_EV_Ubi	48.824	10.825	0	0	0	0	0	0	0	0	0	0			847	231	745	2352	2480	2480		207	98;99	1
DVPAVEITHTFWER	Unmodified	1698.8366	0.83657007	638	sp|P21397|AOFA_HUMAN;sp|P21397-2|AOFA_HUMAN	yes	no	0	0	0	0	0			1					1	1	44.229	44.229	3	0.0020455	11713	20190821_JH_WT_Ubi	87.719	51.399	29953000	0	0	10902000	0	0	0	0	7864500	11187000			848	638	746	2353;2354;2355	2481;2482;2483	2481				3
DVPFSVVYFPLFANLNQLGR	Unmodified	2295.2052	0.20518875	1972	sp|Q9H936|GHC1_HUMAN	yes	yes	0	0	0	0	0								1		59.4	59.4	3	0.0037536	17061	20190902_JH_WT_Ubi_2	62.94	39.378	1553800	0	0	0	0	0	0	0	1553800	0			849	1972	747	2356	2484;2485	2484				2
DVPIGAIICITVGKPEDIEAFK	Unmodified	2384.2661	0.26613403	509	sp|P10515|ODP2_HUMAN	yes	yes	0	0	0	0	1			1							53.254	53.254	3	0.026338	15127	20190821_JH_WT_Ubi	59.585	34.872	3306300	0	0	3306300	0	0	0	0	0	0			850	509	748	2357	2486	2486				1
DVVFNYLHATAFQGTPLAQAVEGPSENVR	Unmodified	3129.552	0.55196238	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	51.611	51.611	3	2.4808E-21	14531	20190821_JH_WT_Ubi	131.75	100.94	19183000	875720	0	8042900	0	0	0	0	5048400	5215600			851	744	749	2358;2359;2360;2361	2487;2488;2489;2490	2488				4
DVVVQHVHFDGLGR	Unmodified	1576.811	0.81102402	2236	sp|Q9Y512|SAM50_HUMAN	yes	yes	0	0	0	0	0	1			1		1		1	1	33.452	33.452	3	0.0055212	9213	20190902_JH_WT_Ubi_3	76.01	38.584	25324000	2589100	0	0	1455800	0	1354000	0	9595500	10330000			852	2236	750	2362;2363;2364;2365;2366	2491;2492;2493;2494;2495	2495				5
DVVVSVEYSKK	GlyGly (K)	1365.714	0.71399532	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1		1								28.278	28.278	2	0.026147	5186	20190821_JH_MUT_Ubi	92.239	56.794	2235800	0	2235800	0	0	0	0	0	0	0			853	970	751	2367	2496	2496		940		0
DVYDKVDYLSSLGK	GlyGly (K)	1714.8414	0.84138068	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	1	0	1	1									42.02	42.02	3	0.020263	10952	20190821_JH_EV_Ubi	63.185	35.537	1089600	1089600	0	0	0	0	0	0	0	0			854	1288	752	2368	2497	2497		1347;1348		1
DVYVQLYLQHLTAR	Unmodified	1717.9152	0.91515474	826	sp|P42167-2|LAP2B_HUMAN;sp|P42167|LAP2B_HUMAN;sp|P42167-3|LAP2B_HUMAN;sp|P42166|LAP2A_HUMAN	yes	no	0	0	0	0	0			1					1		45.203	45.203	3	0.008118	12084	20190821_JH_WT_Ubi	71.933	19.433	5013100	0	0	3567800	0	0	0	0	1445300	0			855	826	753	2369;2370	2498;2499	2498				2
DWEMHVHFK	Unmodified	1227.5495	0.54951295	1202	sp|Q12907|LMAN2_HUMAN	yes	yes	0	0	0	0	0	1	1	1					1	1	31.589	31.589	3	0.0038915	6794	20190821_JH_WT_Ubi	106.42	56.316	36412000	2967500	1826000	16622000	0	0	0	0	7319900	7676300			856	1202	754	2371;2372;2373;2374;2375	2500;2501;2502;2503;2504	2502				5
DWEMHVHFK	Oxidation (M)	1243.5444	0.54442757	1202	sp|Q12907|LMAN2_HUMAN	yes	yes	0	0	0	1	0			1					1		27.3	27.3	3	0.022119	7407	20190902_JH_WT_Ubi_2	71.692	46.916	9697900	0	0	3369800	0	0	0	0	6328200	0			857	1202	754	2376;2377	2505;2506	2506			761	2
DWILPSDYDHAEAEAR	Unmodified	1886.8435	0.84350594	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-5|CALU_HUMAN;sp|O43852-9|CALU_HUMAN;sp|O43852-15|CALU_HUMAN	yes	no	0	0	0	0	0			1					1	1	40.286	40.286	3	0.0069124	10052	20190821_JH_WT_Ubi	67.275	20.975	28792000	0	0	12512000	0	0	0	0	9104800	7175300			858	225	755	2378;2379;2380	2507;2508;2509	2507				3
DWLFAPHYR	Unmodified	1203.5825	0.58252764	1315	sp|Q15008-3|PSMD6_HUMAN;sp|Q15008-2|PSMD6_HUMAN;sp|Q15008|PSMD6_HUMAN;sp|Q15008-4|PSMD6_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	40.018	40.018	3	0.013024	11442	20190902_JH_WT_Ubi_3	78.264	35.461	12409000	0	0	4891300	0	0	488020	0	3648900	3381000			859	1315	756	2381;2382;2383;2384	2510;2511;2512;2513	2513				4
DWRPAITIK	Unmodified	1098.6186	0.61857879	1088	sp|P63279|UBC9_HUMAN	yes	yes	0	0	0	0	1	1	1	1	1	1		1	1	1	34.669	34.669	3	1.0904E-05	8353	20190821_JH_EV_Ubi	153.05	111.6	38660000	2284400	1487900	9399600	2690700	2558100	0	2595400	9776400	7867400			860	1088	757	2385;2386;2387;2388;2389;2390;2391;2392	2514;2515;2516;2517;2518;2519;2520;2521	2514				8
DWYQKQGPGPSR	GlyGly (K)	1531.7168	0.71678929	7;477	CON__P08727;CON__P19001;sp|P08727|K1C19_HUMAN	no	no	0	0	1	0	1	1	1				1	1			25.758	25.758	3	1.482E-05	4494	20190821_JH_MUT_Ubi	138.42	98.608	21711000	2016300	4623900	0	0	0	7375500	7695800	0	0		+	861	7;477	758	2393;2394;2395;2396	2522;2523;2524;2525	2523		15		4
DYAFIHFDER	Unmodified	1311.5884	0.58840088	252	sp|O60506-4|HNRPQ_HUMAN;sp|O60506-3|HNRPQ_HUMAN;sp|O60506-2|HNRPQ_HUMAN;sp|O60506|HNRPQ_HUMAN;sp|O60506-5|HNRPQ_HUMAN	yes	no	0	0	0	0	0						1		1	1	40.005	40.005	3	0.01249	11444	20190902_JH_WT_Ubi_3	78.655	54.804	7938300	0	0	0	0	0	1283600	0	3142100	3512500			862	252	759	2397;2398;2399	2526;2527;2528	2528				3
DYALHWLVLGTHTSDEQNHLVVAR	Unmodified	2773.3936	0.39361124	1377	sp|Q16576|RBBP7_HUMAN;sp|Q16576-2|RBBP7_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	41.514	41.514	4	0.00010098	11919	20190902_JH_WT_Ubi_3	79.695	46.245	61569000	0	4605300	33500000	0	0	3714800	0	10032000	9717300			863	1377	760	2400;2401;2402;2403;2404	2529;2530;2531;2532;2533	2533				5
DYDGWTPLHAAAHWGK	Unmodified	1823.838	0.83796706	165	sp|O14974-5|MYPT1_HUMAN;sp|O14974-4|MYPT1_HUMAN;sp|O14974-3|MYPT1_HUMAN;sp|O14974-2|MYPT1_HUMAN;sp|O14974|MYPT1_HUMAN	yes	no	0	0	0	0	0			1							37.834	37.834	3	0.011052	9080	20190821_JH_WT_Ubi	61.167	29.105	3994300	0	0	3994300	0	0	0	0	0	0			864	165	761	2405	2534	2534				1
DYDTLSKCSPK	GlyGly (K)	1426.6398	0.6398441	2134	sp|Q9UHR4|BI2L1_HUMAN	yes	yes	0	0	1	0	1	1									23.937	23.937	2	0.028075	4392	20190821_JH_EV_Ubi	79.974	53.224	1230800	1230800	0	0	0	0	0	0	0	0			865	2134	762	2406	2535	2535		2005		1
DYEEIGPSICR	Unmodified	1337.5922	0.59216562	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	0	0								1		35.725	35.725	2	0.0084183	10387	20190902_JH_WT_Ubi_2	91.087	53.612	3817700	0	0	0	0	0	0	0	3817700	0			866	1015	763	2407	2536	2536				0
DYELQLVTYK	Unmodified	1270.6445	0.64451877	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0								1		42.671	42.671	2	0.00039518	12737	20190902_JH_WT_Ubi_2	140.16	62.432	14527000	0	0	0	0	0	0	0	14527000	0			867	1332	764	2408	2537	2537				1
DYFFALAHTVR	Unmodified	1338.6721	0.67207093	523	sp|P11216|PYGB_HUMAN	yes	yes	0	0	0	0	0								1	1	41.821	41.821	3	0.017469	12042	20190902_JH_WT_Ubi_3	68.786	39.699	18331000	0	0	0	0	0	0	0	8606100	9725200			868	523	765	2409;2410	2538;2539	2539				2
DYFGLTFCDADSQK	Unmodified	1665.6981	0.69808726	1953	sp|Q9H4G0|E41L1_HUMAN;sp|Q9H4G0-4|E41L1_HUMAN;sp|Q9H4G0-2|E41L1_HUMAN	yes	no	0	0	0	0	0								1		46.957	46.957	2	0.014884	14147	20190902_JH_WT_Ubi_2	70.685	47.08	442680	0	0	0	0	0	0	0	442680	0			869	1953	766	2411	2540	2540				1
DYFGLTFCDADSQKNWLDPSK	GlyGly (K)	2620.154	0.1540174	1953	sp|Q9H4G0|E41L1_HUMAN;sp|Q9H4G0-4|E41L1_HUMAN;sp|Q9H4G0-2|E41L1_HUMAN	yes	no	0	0	1	0	1			1							49.126	49.126	3	0.035609	13669	20190821_JH_WT_Ubi	42.716	19.593	1313800	0	0	1313800	0	0	0	0	0	0			870	1953	767	2412	2541	2541				1
DYGNSPLHR	Unmodified	1057.4941	0.49410656	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0								1		22.597	22.597	3	0.032884	5850	20190902_JH_WT_Ubi_2	58.433	36.473	3697900	0	0	0	0	0	0	0	3697900	0			871	690	768	2413	2542	2542				1
DYGVLLEGSGLALR	Unmodified	1461.7827	0.78274359	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	0	0	0	0		1								49.665	49.665	2	1.8767E-41	13057	20190821_JH_MUT_Ubi	223.71	167.45	2169200	0	2169200	0	0	0	0	0	0	0			872	724	769	2414	2543	2543				0
DYGVYLEDSGHTLR	Unmodified	1623.7529	0.75290002	1220	sp|Q13162|PRDX4_HUMAN	yes	yes	0	0	0	0	0			1							35.371	35.371	3	0.031513	8128	20190821_JH_WT_Ubi	48.467	15.52	9115800	0	0	9115800	0	0	0	0	0	0			873	1220	770	2415	2544	2544				1
DYHNLFSPR	Unmodified	1147.5411	0.54105675	878	sp|P49023-4|PAXI_HUMAN;sp|P49023-2|PAXI_HUMAN;sp|P49023|PAXI_HUMAN;sp|P49023-3|PAXI_HUMAN	yes	no	0	0	0	0	0									1	32.579	32.579	3	0.030604	8972	20190902_JH_WT_Ubi_3	60.398	4.8673	1507500	0	0	0	0	0	0	0	0	1507500			874	878	771	2416	2545	2545				1
DYIWNTLNSGR	Unmodified	1337.6364	0.6364137	287	sp|O75390|CISY_HUMAN	yes	yes	0	0	0	0	0			1							43.464	43.464	2	0.018315	11378	20190821_JH_WT_Ubi	76.655	40.711	5724100	0	0	5724100	0	0	0	0	0	0			875	287	772	2417	2546	2546				0
DYLHYHIK	Unmodified	1087.5451	0.5450795	175	sp|O15144|ARPC2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	26.154	26.154	3	0.020684	5164	20190821_JH_WT_Ubi	77.674	54.151	96549000	0	0	18226000	0	0	0	0	39789000	38534000			876	175	773	2418;2419;2420	2547;2548;2549	2547				3
DYPVVSIEDPFDQDDWGAWQK	Unmodified	2509.1074	0.10738478	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	55.316	55.316	3	2.3538E-80	15800	20190902_JH_WT_Ubi_3	219.72	188.96	23623000	0	1042900	8169600	0	0	0	682820	9804200	3923800			877	435	774	2421;2422;2423;2424;2425	2550;2551;2552;2553;2554	2554				3
DYSHYYTTIQDLR	Unmodified	1673.7686	0.76855009	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	37.57	37.57	3	2.1451E-08	9288	20190821_JH_EV_Ubi	151.78	93.461	965690000	81123000	23850000	305090000	38197000	36715000	36709000	21404000	206980000	215630000		+	878	7;477	775	2426;2427;2428;2429;2430;2431;2432;2433;2434	2555;2556;2557;2558;2559;2560;2561;2562;2563	2555				9
DYSHYYTTIQDLR	Deamidation (NQ)	1674.7526	0.75256567	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	0	0	0								1	1	39.03	39.03	3	3.7738E-05	11092	20190902_JH_WT_Ubi_3	138.45	95.881	22534000	0	0	0	0	0	0	0	10557000	11977000		+	879	7;477	775	2435;2436	2564;2565	2565	711			2
DYTGCSTSESLSPVKQAPR	GlyGly (K)	2196.0117	0.011710258	335	sp|O95297-4|MPZL1_HUMAN;sp|O95297-2|MPZL1_HUMAN;sp|O95297|MPZL1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.151	29.151	3	2.1711E-18	6626	20190902_JH_MUT_Ubi_3	156.5	94.445	193740000	34028000	9790300	20097000	19526000	29701000	14830000	16064000	32501000	17208000			880	335	776	2437;2438;2439;2440;2441;2442;2443;2444;2445	2566;2567;2568;2569;2570;2571;2572;2573;2574;2575	2572		311		10
DYTQMNELQR	Oxidation (M)	1312.5718	0.57176453	443	sp|P07203|GPX1_HUMAN;sp|P07203-2|GPX1_HUMAN	yes	no	0	0	0	1	0								1		26.355	26.355	2	0.025719	7085	20190902_JH_WT_Ubi_2	66.299	26.03	2617700	0	0	0	0	0	0	0	2617700	0			881	443	777	2446	2576	2576			243	0
DYTYEELLNR	Unmodified	1314.6092	0.6091959	625	sp|P20042|IF2B_HUMAN	yes	yes	0	0	0	0	0								1		42.025	42.025	2	0.011906	12494	20190902_JH_WT_Ubi_2	110.87	57.705	2465300	0	0	0	0	0	0	0	2465300	0			882	625	778	2447	2577	2577				0
DYVAKGEDVNR	GlyGly (K)	1378.6477	0.64770667	994	sp|P58546|MTPN_HUMAN	yes	yes	0	0	1	0	1									1	22.287	22.287	2	0.018198	5688	20190902_JH_WT_Ubi_3	86.882	48.128	0	0	0	0	0	0	0	0	0	0			883	994	779	2448	2578	2578		973		1
DYYFALAHTVR	Unmodified	1354.667	0.66698555	436	sp|P06737-2|PYGL_HUMAN;sp|P06737|PYGL_HUMAN	no	no	0	0	0	0	0			1					1	1	37.779	37.779	3	0.006725	9046	20190821_JH_WT_Ubi	89.266	60.539	23571000	0	0	7897700	0	0	0	0	8237500	7436200			884	436	780	2449;2450;2451	2579;2580;2581	2579				3
EAADAELGQLR	Unmodified	1171.5833	0.5833155	1185	sp|Q08378|GOGA3_HUMAN;sp|Q08378-2|GOGA3_HUMAN;sp|Q08378-4|GOGA3_HUMAN	yes	no	0	0	0	0	0								1		33.776	33.776	2	0.036307	9716	20190902_JH_WT_Ubi_2	59.153	12.159	4518500	0	0	0	0	0	0	0	4518500	0			885	1185	781	2452	2582	2582				0
EAAGEGPALYEDPPDQKTSPSGK	GlyGly (K)	2457.1296	0.12957679	700	sp|P27695|APEX1_HUMAN	yes	yes	0	0	1	0	1		1								28.831	28.831	3	0.024997	5435	20190821_JH_MUT_Ubi	44.788	15.404	406550	0	406550	0	0	0	0	0	0	0			886	700	782	2453	2583	2583		685		1
EAATLEVERPLPMEVEK	Oxidation (M)	1955.9874	0.98739299	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	0	1	1									1	32.349	32.349	3	0.024728	8877	20190902_JH_WT_Ubi_3	66.246	41.716	14905000	0	0	0	0	0	0	0	0	14905000			887	928	783	2454	2584	2584			583	1
EADIDGDGQVNYEEFVQMMTAK	2 Oxidation (M)	2521.0625	0.062484779	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	0	2	0									1	41.985	41.985	3	3.9176E-06	12167	20190902_JH_WT_Ubi_3	95.624	70.467	4396300	0	0	0	0	0	0	0	0	4396300			888	504	784	2455	2585	2585			290;291	1
EAEAAIYHLQLFEELR	Unmodified	1930.9789	0.97887721	556	sp|P14618|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	46.21	46.21	3	5.3594E-19	13997	20190902_JH_WT_Ubi_2	162.64	128.2	209720000	0	6550700	110440000	0	0	2689300	2524800	48782000	38737000			889	556	785	2456;2457;2458;2459;2460;2461	2586;2587;2588;2589;2590;2591	2590				6
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	Unmodified	3310.5268	0.52681154	1410	sp|Q3ZCM7|TBB8_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	46.145	46.145	3	3.2987E-17	13974	20190902_JH_WT_Ubi_2	116.65	0	107110000	0	13230000	56915000	0	0	3836200	4955600	16949000	11221000			890	1410	786	2462;2463;2464;2465;2466;2467	2592;2593;2594;2595;2596;2597	2596				6
EAFSLFDKDGDGTITTK	GlyGly (K)	1957.9269	0.92690122	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	1	0	1		1				1	1			37.89	37.89	3	0.00080831	10290	20190902_JH_MUT_Ubi_2	90.498	54.607	15524000	0	3885500	0	0	0	5573600	6065000	0	0			891	504	787	2468;2469;2470	2598;2599;2600	2599		493;494		3
EAGFLRPVTIFGPIADVAR	Unmodified	2028.1156	0.11564547	1174	sp|Q07157-2|ZO1_HUMAN;sp|Q07157|ZO1_HUMAN	yes	no	0	0	0	0	1	1		1							49.524	49.524	3	4.3651E-09	13774	20190821_JH_WT_Ubi	133.86	55.371	3372900	1007600	0	2365300	0	0	0	0	0	0			892	1174	788	2471;2472	2601;2602	2602				2
EAGFPPGVVNIVPGFGPTAGAAIASHEDVDK	Unmodified	3018.5087	0.50870058	421	sp|P05091-2|ALDH2_HUMAN;sp|P05091|ALDH2_HUMAN	yes	no	0	0	0	0	0	1	1	1							49.482	49.482	3	0.0061229	13065	20190821_JH_MUT_Ubi	44.483	23.166	5968800	2019900	853860	3095000	0	0	0	0	0	0			893	421	789	2473;2474;2475	2603;2604;2605	2604				3
EAGFPPGVVNIVPGFGPTVGAAISSHPQINK	Unmodified	3056.6084	0.60835504	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	49.477	49.477	3	1.5807E-16	13089	20190821_JH_MUT_Ubi	115.06	92.001	168600000	6851000	20697000	50023000	1397400	1176500	13708000	8201700	15187000	51353000			894	865	790	2476;2477;2478;2479;2480;2481;2482;2483;2484	2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616	2609				11
EAGFPPGVVNIVPGFGPTVGAAISSHPQINK	2 Deamidation (NQ)	3058.5764	0.57638621	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	2	0	0	0			1							50.44	50.44	3	0.014342	14164	20190821_JH_WT_Ubi	49.662	24.641	0	0	0	0	0	0	0	0	0	0			895	865	790	2485	2617	2617	307;930			1
EAGITEKVVFEQTK	GlyGly (K)	1691.873	0.87301516	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	1	0	1			1			1				31.276	31.276	3	0.008605	6786	20190821_JH_WT_Ubi	74.769	20.426	30633000	0	0	16661000	0	0	13972000	0	0	0			896	997	791	2486;2487	2618;2619	2619		975		2
EAGKGGVADSR	GlyGly (K)	1159.5582	0.55816338	1701	sp|Q8WWI5|CTL1_HUMAN;sp|Q8WWI5-3|CTL1_HUMAN;sp|Q8WWI5-2|CTL1_HUMAN	yes	no	0	0	1	0	1		1								11.611	11.611	3	0.028204	1920	20190821_JH_MUT_Ubi	65.695	28.536	759360	0	759360	0	0	0	0	0	0	0			897	1701	792	2488	2620	2620		1694		1
EAGNPGSLFGYSVALHR	Unmodified	1773.8798	0.87983187	685	sp|P26006|ITA3_HUMAN;sp|P26006-1|ITA3_HUMAN	yes	no	0	0	0	0	0			1			1			1	39.615	39.615	3	0.00028848	9841	20190821_JH_WT_Ubi	97.767	49.993	61373000	0	0	30252000	0	0	11220000	0	0	19901000			898	685	793	2489;2490;2491	2621;2622;2623	2622				3
EAIIRINVGGKLLTNHLK	Deamidation (NQ)	1989.1735	0.1734947	1917	sp|Q9GZN1|ARP6_HUMAN	yes	yes	0	1	0	0	2									1	51.631	51.631	2	0.0022761	15048	20190902_JH_WT_Ubi_3	81.625	38.649	1111600	0	0	0	0	0	0	0	0	1111600			899	1917	794	2492	2624	2624	614			1
EAIQHPADEKLQEK	GlyGly (K)	1748.8693	0.86932676	2035	sp|Q9NUQ9|FA49B_HUMAN	yes	yes	0	0	1	0	1		1		1	1	1				20.262	20.262	3	0.0021873	3193	20190821_JH_MUT_Ubi	93.348	53.924	40438000	0	5091300	0	11281000	12243000	11823000	0	0	0			900	2035	795	2493;2494;2495;2496	2625;2626;2627;2628	2627		1931		4
EAISTSKEQEAK	GlyGly (K)	1433.6998	0.69980182	355	sp|O95721|SNP29_HUMAN	yes	yes	0	0	1	0	1	1				1					17.333	17.333	3	0.020883	2928	20190821_JH_EV_Ubi	69.65	41.597	4573100	1869200	0	0	0	2703900	0	0	0	0			901	355	796	2497;2498	2629;2630	2629		320		2
EAKQMENGMLVTDSAGK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	1954.8612	0.8612062	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	2	1	1	1		1	1	1	1	1		22.178	22.178	3	5.8273E-10	4625	20190902_JH_EV_Ubi_3	140.96	82.145	25497000	3699800	935460	0	6148200	6543300	2222900	3763800	2183700	0			902	760	797	2499;2500;2501;2502;2503;2504;2505	2631;2632;2633;2634;2635;2636;2637	2633	269;893	734;735	476;477	7
EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK	Unmodified	2914.2952	0.29519815	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	31.919	31.919	3	1.1071E-17	9103	20190902_JH_WT_Ubi_2	120.98	103.26	22697000	1041400	0	5130600	1328600	1065700	0	0	7282200	6848100			903	718	798	2506;2507;2508;2509;2510;2511	2638;2639;2640;2641;2642;2643	2642				6
EAPCVLIYIPDGHTK	Unmodified	1711.8603	0.86034198	453	sp|P07814|SYEP_HUMAN	yes	yes	0	0	0	0	0									1	39.612	39.612	3	0.027142	11361	20190902_JH_WT_Ubi_3	49.149	19.426	3342400	0	0	0	0	0	0	0	0	3342400			904	453	799	2512	2644	2644				1
EAQDDLVKTK	GlyGly (K)	1259.6357	0.635745	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	1	0	1		1	1			1				19.741	19.741	3	0.0015849	3066	20190821_JH_MUT_Ubi	121.5	73.543	9051300	0	1791800	3158400	0	0	4101100	0	0	0			905	568	800	2513;2514;2515	2645;2646;2647	2645		559		3
EAQTSFLHLGYLPNQLFR	Unmodified	2133.1007	0.10072368	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN	yes	no	0	0	0	0	0		1					1			48.115	48.115	3	8.8234E-15	12685	20190821_JH_MUT_Ubi	150.34	91.451	7768200	0	4866300	0	0	0	0	2901900	0	0			906	1708	801	2516;2517	2648;2649	2648				2
EASGTDVKQLDQGNK	GlyGly (K)	1702.8122	0.81220581	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1		1	1	21.568	21.568	3	0.0033082	3759	20190821_JH_EV_Ubi	83.53	41.105	149410000	17740000	7156400	17676000	16384000	39050000	9711800	0	12517000	29170000			907	1603	802	2518;2519;2520;2521;2522;2523;2524;2525	2650;2651;2652;2653;2654;2655;2656;2657	2650		1600;1601		8
EASGTDVKQLDQGNKDVR	2 GlyGly (K)	2187.0516	0.051601238	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	2	0	2				1	1					22.293	22.293	3	0.013073	4669	20190902_JH_EV_Ubi_3	89.466	63.478	3608800	0	0	0	1387900	2220900	0	0	0	0			908	1603	803	2526;2527	2658;2659	2659		1600;1601		2
EATDVIIIHSK	Unmodified	1224.6714	0.67140222	564	sp|P15144|AMPN_HUMAN	yes	yes	0	0	0	0	0								1		28.853	28.853	2	0.00072427	7925	20190902_JH_WT_Ubi_2	151.22	82.992	4989900	0	0	0	0	0	0	0	4989900	0			909	564	804	2528	2660	2660				0
EAVCIVLSDDTCSDEKIR	GlyGly (K)	2223.0147	0.014746726	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1									1	34.562	34.562	3	0.024202	9668	20190902_JH_WT_Ubi_3	62.69	23.866	1061700	0	0	0	0	0	0	0	0	1061700			910	974	805	2529	2661	2661		958		0
EAVEAIQNSTSIK	Unmodified	1388.7147	0.7147236	1256	sp|Q13620-3|CUL4B_HUMAN;sp|Q13620-1|CUL4B_HUMAN;sp|Q13620|CUL4B_HUMAN	yes	no	0	0	0	0	0									1	29.136	29.136	2	0.0057028	7763	20190902_JH_WT_Ubi_3	87.216	30.785	1409100	0	0	0	0	0	0	0	0	1409100			911	1256	806	2530	2662	2662				1
EAVFPFQPGSVAEVCITFDQANLTVK	Unmodified	2866.4211	0.42113112	486	sp|P09382|LEG1_HUMAN	yes	yes	0	0	0	0	0		1	1							54.477	54.477	3	2.1328E-05	14556	20190821_JH_MUT_Ubi	85.17	49.997	11796000	0	3287400	8508100	0	0	0	0	0	0			912	486	807	2531;2532	2663;2664	2663				2
ECCHGDLLECADDR	Unmodified	1748.6553	0.65525294	5	CON__P02769	yes	yes	0	0	0	0	0				1						26.895	26.895	3	0.00076713	5968	20190902_JH_EV_Ubi_2	102.9	85.907	3851700	0	0	0	3851700	0	0	0	0	0		+	913	5	808	2533	2665	2665				1
ECEDASEEPEEKDANQGEK	GlyGly (K)	2306.9081	0.90809263	1610	sp|Q8N370-4|LAT4_HUMAN;sp|Q8N370|LAT4_HUMAN;sp|Q8N370-3|LAT4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	19.609	19.609	3	4.0798E-09	3335	20190821_JH_EV_Ubi	130.02	99.369	23384000	2781300	1672400	2127300	3027800	0	2334700	3238900	3782600	4419200			914	1610	809	2534;2535;2536;2537;2538;2539;2540;2541	2666;2667;2668;2669;2670;2671;2672;2673;2674	2666		1607		9
ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK	Oxidation (M)	4311.9446	0.94458203	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	1	0			1							47.319	47.319	4	7.8124E-06	12949	20190821_JH_WT_Ubi	68.284	51.621	7871800	0	0	7871800	0	0	0	0	0	0			915	1097;1515;1858	810	2542	2675;2676	2675			683	2
EDEEEDDDVVAPKPPIEPEEEK	Unmodified	2537.1181	0.11806863	1235	sp|Q13409-6|DC1I2_HUMAN;sp|Q13409-3|DC1I2_HUMAN;sp|Q13409-7|DC1I2_HUMAN;sp|Q13409-2|DC1I2_HUMAN;sp|Q13409-5|DC1I2_HUMAN;sp|Q13409|DC1I2_HUMAN	yes	no	0	0	0	0	1								1	1	34.555	34.555	3	4.674E-05	9601	20190902_JH_WT_Ubi_3	89.669	64.259	6266700	0	0	0	0	0	0	0	3062900	3203800			916	1235	811	2543;2544	2677;2678	2678				2
EDEKDGQAYK	GlyGly (K)	1295.563	0.56297399	2079	sp|Q9NZW5|MPP6_HUMAN	yes	yes	0	0	1	0	1					1		1			11.128	11.128	3	0.029241	2386	20190902_JH_MUT_Ubi_3	67.113	34.362	8692000	0	0	0	0	4255600	0	4436500	0	0			917	2079	812	2545;2546	2679;2680	2680		1962		2
EDENLEVQIPLKGK	GlyGly (K)	1724.8945	0.89447888	1622	sp|Q8N6Y1|PCD20_HUMAN	yes	yes	0	0	1	0	1				1						35.072	35.072	3	0.00022178	8545	20190902_JH_EV_Ubi_2	111.52	53.256	2332700	0	0	0	2332700	0	0	0	0	0			918	1622	813	2547	2681	2681		1625		1
EDGNEEDKENQGDETQGQQPPQR	GlyGly (K)	2741.1397	0.13970056	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	1	0	1		1	1		1	1	1	1	1	20.089	20.089	3	5.2885E-95	4151	20190902_JH_EV_Ubi_3	231.39	195.51	6064200	0	456830	1132700	0	1178700	0	992900	1219000	1084100			919	1090	814	2548;2549;2550;2551;2552;2553;2554	2682;2683;2684;2685;2686;2687;2688	2682		1082		7
EDGNEEDKENQGDETQGQQPPQR	GlyGly (K);Deamidation (NQ)	2742.1237	0.12371614	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	1	1	0	1					1					20.645	20.645	3	7.071E-08	4296	20190902_JH_EV_Ubi_3	111.93	91.062	310560	0	0	0	0	310560	0	0	0	0			920	1090	814	2555	2689	2689	971;972;973	1082		1
EDGVLCCQGECQWLHLDLIK	Unmodified	2472.1236	0.12358567	621	sp|P19623|SPEE_HUMAN	yes	yes	0	0	0	0	0			1							47.375	47.375	3	0.0045852	12983	20190821_JH_WT_Ubi	61.821	38.094	1793300	0	0	1793300	0	0	0	0	0	0			921	621	815	2556	2690	2690				1
EDHEETKLSVGDIENK	GlyGly (K)	1955.9072	0.90722841	1693	sp|Q8WUM9|S20A1_HUMAN	yes	yes	0	0	1	0	1	1				1	1				27.014	27.014	3;4	2.1151E-07	5919	20190902_JH_EV_Ubi_3	125.73	66.973	20356000	8996900	0	0	0	6075000	5283700	0	0	0			922	1693	816	2557;2558;2559	2691;2692;2693	2692		1685;1686		3
EDIANLADEFK	Unmodified	1263.5983	0.59829686	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0									1	42.434	42.434	2	0.016623	12290	20190902_JH_WT_Ubi_3	68.626	20.666	2848100	0	0	0	0	0	0	0	0	2848100			923	1847	817	2560	2694	2694				0
EDITHTYKYPEGSSEER	GlyGly (K)	2153.9502	0.95015586	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	1	0	1	1			1	1		1	1		24.776	24.776	3	0.00016685	6667	20190902_JH_WT_Ubi_2	105.63	47.656	11560000	1374500	0	0	2861700	1396900	0	1880600	4046600	0			924	645	818	2561;2562;2563;2564;2565	2695;2696;2697;2698;2699	2699		618		5
EDITQSAQHALR	Unmodified	1367.6793	0.67934115	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-5|ILF3_HUMAN;sp|Q12906-2|ILF3_HUMAN;sp|Q12906-3|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN;sp|Q12906-4|ILF3_HUMAN;sp|Q12906-6|ILF3_HUMAN	no	no	0	0	0	0	0			1							26.92	26.92	2	4.1396E-06	5377	20190821_JH_WT_Ubi	131.52	67.309	522330	0	0	522330	0	0	0	0	0	0			925	1200;1201	819	2566	2700	2700				0
EDIVPQLKASLLSAPPCR	GlyGly (K)	2107.1096	0.10957381	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN	yes	no	0	0	1	0	1						1				42.998	42.998	3	0.0024582	12321	20190902_JH_MUT_Ubi_2	73.983	44.297	11446000	0	0	0	0	0	11446000	0	0	0			926	2073	820	2567	2701	2701		1955		1
EDKSPSEESAPTTSPESVSGSVPSSGSSGR	GlyGly (K)	3035.3439	0.34393925	963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	27.747	27.747	3	7.5277E-61	7642	20190902_JH_WT_Ubi_2	186.24	161.03	98991000	8225700	6300800	14236000	6103300	0	6155300	8882200	21702000	27386000			927	963	821	2568;2569;2570;2571;2572;2573;2574;2575	2702;2703;2704;2705;2706;2707;2708;2709;2710	2709		930		9
EDLMGLAIGTHGSNIQQAR	2 Deamidation (NQ)	2011.9633	0.9633035	914	sp|P51114|FXR1_HUMAN;sp|P51114-2|FXR1_HUMAN;sp|P51114-3|FXR1_HUMAN	yes	no	0	2	0	0	0									1	34.498	34.498	3	0.027703	9652	20190902_JH_WT_Ubi_3	73.593	11.216	12422000	0	0	0	0	0	0	0	0	12422000			928	914	822	2576	2711	2711	313;937			1
EDLRPSAPQQEGEASK	Unmodified	1740.8279	0.82785588	312	sp|O76070|SYUG_HUMAN	yes	yes	0	0	0	0	1			1						1	22.488	22.488	3	0.0035883	4211	20190821_JH_WT_Ubi	95.236	59.579	18581000	0	0	8010300	0	0	0	0	0	10571000			929	312	823	2577;2578	2712;2713	2712				2
EDLVFIFWAPESAPLKSK	GlyGly (K)	2190.1361	0.13610614	667	sp|P23528|COF1_HUMAN;sp|Q9Y281-3|COF2_HUMAN;sp|Q9Y281|COF2_HUMAN	yes	no	0	0	1	0	1	1	1	1					1		51.606	51.606	3	1.6904E-08	14495	20190821_JH_WT_Ubi	128.82	106.19	6987000	625030	2411800	3950100	0	0	0	0	0	0			930	667	824	2579;2580;2581;2582	2714;2715;2716;2717	2716		638;639		4
EDQAEAWGCSCCPPETKHQALSGTPK	GlyGly (K)	3057.3015	0.30150305	1935	sp|Q9H1Z9|TSN10_HUMAN	yes	yes	0	0	1	0	1			1							28.04	28.04	4	0.00014121	5709	20190821_JH_WT_Ubi	75.064	42.983	3022300	0	0	3022300	0	0	0	0	0	0			931	1935	825	2583	2718	2718		1873		1
EDQCPLQVALPAEKAEGR	GlyGly (K)	2124.027	0.026966392	1745	sp|Q969F2-2|NKD2_HUMAN;sp|Q969F2|NKD2_HUMAN	yes	no	0	0	1	0	1	1			1		1				34.955	34.955	3	0.00029147	9170	20190902_JH_MUT_Ubi_2	94.454	58.425	4237700	1578300	0	0	1311200	0	1348200	0	0	0			932	1745	826	2584;2585;2586	2719;2720;2721	2721		1734		2
EDQKQNEPFVATQSSACVDGPANH	GlyGly (K)	2742.194	0.19398473	111	sp|O00180|KCNK1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1		1	30.343	30.343	3	3.9788E-112	7401	20190902_JH_MUT_Ubi_2	246.69	203.97	33195000	3722800	2910700	8475900	0	3381400	2638300	4217800	0	7848600			933	111	827	2587;2588;2589;2590;2591;2592;2593	2722;2723;2724;2725;2726;2727;2728;2729;2730	2726		95		9
EDQSILCTGESGAGKTENTK	GlyGly (K)	2238.007	0.007018811	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN;sp|P35749-4|MYH11_HUMAN;sp|P35749-3|MYH11_HUMAN;sp|P35749|MYH11_HUMAN;sp|P35749-2|MYH11_HUMAN;sp|Q7Z406-5|MYH14_HUMAN;sp|Q7Z406-4|MYH14_HUMAN;sp|P35580|MYH10_HUMAN;sp|P35580-5|MYH10_HUMAN;sp|P35580-2|MYH10_HUMAN;sp|Q7Z406|MYH14_HUMAN;sp|P35580-3|MYH10_HUMAN;sp|Q7Z406-6|MYH14_HUMAN;sp|P35580-4|MYH10_HUMAN;sp|Q7Z406-2|MYH14_HUMAN	yes	no	0	0	1	0	1		1				1	1			25.863	25.863	3	0.0048686	5929	20190902_JH_MUT_Ubi_2	63.443	33.806	1882600	0	412070	0	0	0	739010	731530	0	0			934	776	828	2594;2595;2596	2731;2732;2733	2732		761;762		3
EDQYDHLDAADMTK	Oxidation (M)	1666.6781	0.6780801	767	sp|P34932|HSP74_HUMAN	yes	yes	0	0	0	1	0			1							25.455	25.455	3	0.031293	4976	20190821_JH_WT_Ubi	52.891	28.378	1176200	0	0	1176200	0	0	0	0	0	0			935	767	829	2597	2734	2734			479	1
EDSILDQKVALLK	GlyGly (K)	1584.8723	0.87228688	1559	sp|Q86WA9|S2611_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			39.561	39.561	3	0.0012045	10090	20190821_JH_EV_Ubi	107.03	53.578	20371000	2415500	3059000	3783700	2635400	2121500	2993900	3362100	0	0			936	1559	830	2598;2599;2600;2601;2602;2603;2604	2735;2736;2737;2738;2739;2740;2741	2735		1546		7
EDSQRPGAHLTVK	Deamidation (NQ)	1437.7212	0.72120596	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	yes	no	0	1	0	0	1									1	19.734	19.734	2	0.0075627	4898	20190902_JH_WT_Ubi_3	87.184	22.344	819640	0	0	0	0	0	0	0	0	819640			937	492	831	2605	2742	2742	842			0
EDTEEHHLR	Unmodified	1164.516	0.51596421	492;653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN;sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	no	no	0	0	0	0	0			1		1					10.219	10.219	3	0.014389	1913	20190821_JH_WT_Ubi	75.043	32.756	15893000	0	0	11463000	0	4430000	0	0	0	0			938	653;492	832	2606;2607	2743;2744	2744				2
EDTSEQVVPVLVKNWK	GlyGly (K)	1984.0266	0.026555687	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1					1		1			39.713	39.713	3	0.00046975	10223	20190902_JH_MUT_Ubi_3	100.22	69.648	2795600	0	0	0	0	1162300	0	1633300	0	0			939	760	833	2608;2609	2745;2746	2746		736		2
EDVFVHQTAIK	Unmodified	1285.6667	0.6666512	1090;593	sp|P67809|YBOX1_HUMAN;sp|Q9Y2T7|YBOX2_HUMAN;sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN;sp|P16989-3|YBOX3_HUMAN	no	no	0	0	0	0	0								1		28.098	28.098	3	0.017575	7692	20190902_JH_WT_Ubi_2	68.657	28.872	13689000	0	0	0	0	0	0	0	13689000	0			940	1090;593	834	2610	2747	2747				1
EDVFVHQTAIKK	GlyGly (K)	1527.8045	0.80454166	1090;593	sp|P67809|YBOX1_HUMAN;sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN;sp|P16989-3|YBOX3_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	23.701	23.701	3	0.00053853	5000	20190902_JH_EV_Ubi_3	121.36	72.171	113770000	8535500	8568700	10116000	10082000	10701000	16616000	13643000	16148000	19355000			941	1090;593	835	2611;2612;2613;2614;2615;2616;2617;2618;2619	2748;2749;2750;2751;2752;2753;2754;2755;2756	2750		579;580		9
EEAAAVPAAAPDDLALLKNLR	GlyGly (K)	2261.2016	0.20155994	1549	sp|Q86UE4|LYRIC_HUMAN	yes	yes	0	0	1	0	1									1	44.557	44.557	3	0.012477	12996	20190902_JH_WT_Ubi_3	54.368	23.257	2210500	0	0	0	0	0	0	0	0	2210500			942	1549	836	2620	2757	2757		1544		1
EEAATGGGSTGEADGKTAAAAAEHSQR	GlyGly (K)	2643.1757	0.17569213	196	sp|O43242|PSMD3_HUMAN	yes	yes	0	0	1	0	1						1			1	21.99	21.99	3	0.00024413	4871	20190902_JH_MUT_Ubi_2	73.127	51.884	1837500	0	0	0	0	0	641050	0	0	1196400			943	196	837	2621;2622	2758;2759	2758		177		2
EEASTSLPTKPTQGASSASEPQEAPPK	GlyGly (K)	2838.3519	0.35192516	369	sp|O96005-3|CLPT1_HUMAN;sp|O96005-4|CLPT1_HUMAN;sp|O96005|CLPT1_HUMAN	yes	no	0	0	1	0	1									1	27.445	27.445	3	0.00058273	7218	20190902_JH_WT_Ubi_3	67.31	19.707	1379100	0	0	0	0	0	0	0	0	1379100			944	369	838	2623	2760	2760		331		1
EEDPATGTGDPPR	Unmodified	1340.5844	0.58443771	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	0	0	0								1		22.485	22.485	2	0.00031002	5815	20190902_JH_WT_Ubi_2	112.83	77.323	0	0	0	0	0	0	0	0	0	0			945	849	839	2624	2761	2761				1
EEEEAFASSQSSQGAQSLTFSKFEEK	GlyGly (K)	2994.3367	0.33666903	2144	sp|Q9UJ41-2|RABX5_HUMAN;sp|Q9UJ41-4|RABX5_HUMAN;sp|Q9UJ41-3|RABX5_HUMAN;sp|Q9UJ41|RABX5_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	37.379	37.379	3	3.6733E-105	10072	20190902_JH_MUT_Ubi_2	239.9	201.7	130470000	15806000	22120000	23751000	9315800	8613600	16076000	11690000	14979000	8119200			946	2144	840	2625;2626;2627;2628;2629;2630;2631;2632;2633	2762;2763;2764;2765;2766;2767;2768;2769;2770;2771	2766		2011		10
EEEEAFASSQSSQGAQSLTFSKFEEK	GlyGly (K);2 Deamidation (NQ)	2996.3047	0.3047002	2144	sp|Q9UJ41-2|RABX5_HUMAN;sp|Q9UJ41-4|RABX5_HUMAN;sp|Q9UJ41-3|RABX5_HUMAN;sp|Q9UJ41|RABX5_HUMAN	yes	no	0	2	1	0	1					1					37.861	37.861	3	0.0068439	9386	20190902_JH_EV_Ubi_3	64.069	38.862	0	0	0	0	0	0	0	0	0	0			947	2144	840	2634	2772	2772	1304;1305	2011		1
EEEEAFASSQSSQGAQSLTFSKFEEK	GlyGly (K);Deamidation (NQ)	2995.3207	0.32068461	2144	sp|Q9UJ41-2|RABX5_HUMAN;sp|Q9UJ41-4|RABX5_HUMAN;sp|Q9UJ41-3|RABX5_HUMAN;sp|Q9UJ41|RABX5_HUMAN	yes	no	0	1	1	0	1						1				37.902	37.902	3	2.4563E-06	10362	20190902_JH_MUT_Ubi_2	96.341	71.61	2662800	0	0	0	0	0	2662800	0	0	0			948	2144	840	2635	2773	2773	1304;1305	2011		1
EEEEEPLPTKK	GlyGly (K)	1441.6937	0.69365381	993	sp|P58335-2|ANTR2_HUMAN;sp|P58335-4|ANTR2_HUMAN;sp|P58335|ANTR2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	21.534	21.534	3	0.0062908	4026	20190821_JH_WT_Ubi	97.472	66.905	65274000	3817500	1458700	11371000	4378700	8797400	2027900	1779800	12108000	19535000			949	993	841	2636;2637;2638;2639;2640;2641;2642;2643;2644	2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784	2781		970;971		11
EEEGEETAQVLAASKER	GlyGly (K)	1988.9287	0.92869214	1634	sp|Q8NBR6-2|MINY2_HUMAN;sp|Q8NBR6|MINY2_HUMAN	yes	no	0	0	1	0	1				1		1		1		28.879	28.879	3	1.9157E-05	8025	20190902_JH_WT_Ubi_2	115.1	74.476	6951500	0	0	0	0	0	2815200	0	4136200	0			950	1634	842	2645;2646;2647	2785;2786;2787	2787		1635		3
EEEGTGVVHQAPYFGAEDYR	Unmodified	2252.9974	0.9974404	822	sp|P41252|SYIC_HUMAN	yes	yes	0	0	0	0	0			1						1	34.238	34.238	3	0.00065729	9549	20190902_JH_WT_Ubi_3	75.239	45.506	3839900	0	0	0	0	0	0	0	0	3839900			951	822	843	2648;2649	2788;2789	2789				2
EEEIAALVIDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	1087	sp|P63261|ACTG_HUMAN	yes	yes	1	0	0	1	0								1	1	54.204	54.204	2	0.0027125	16200	20190902_JH_WT_Ubi_2	80.905	47.71	25613000	0	0	0	0	0	0	0	12224000	13389000			952	1087	844	2650;2651	2790;2791	2790			671	0
EEETSIDVAGKPNEVTK	GlyGly (K)	1958.9433	0.94327957	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	27.46	27.46	3	1.1874E-07	5551	20190821_JH_WT_Ubi	125.47	81.222	616950000	94530000	22658000	87056000	57476000	110290000	51998000	48303000	79988000	64651000			953	955	845	2652;2653;2654;2655;2656;2657;2658;2659;2660	2792;2793;2794;2795;2796;2797;2798;2799;2800	2798		916;917		9
EEETSIDVAGKPNEVTK	GlyGly (K);Deamidation (NQ)	1959.9273	0.92729515	955	sp|P53985|MOT1_HUMAN	yes	yes	0	1	1	0	1									1	27.699	27.699	3	0.020402	7315	20190902_JH_WT_Ubi_3	89.992	47.567	5792400	0	0	0	0	0	0	0	0	5792400			954	955	845	2661	2801	2801	321	916;917		1
EEETSIDVAGKPNEVTKAAESPDQK	GlyGly (K);Deamidation (NQ)	2786.3094	0.30939165	955	sp|P53985|MOT1_HUMAN	yes	yes	0	1	1	0	2	1	1		1			1		1	28.401	28.401	3	2.2644E-33	7479	20190902_JH_WT_Ubi_3	165.9	125.89	5969800	1011300	438360	0	1405000	0	0	1096500	0	2018700			955	955	846	2662;2663;2664;2665;2666	2802;2803;2804;2805;2806	2806	321;947	914;916;917		5
EEETSIDVAGKPNEVTKAAESPDQK	GlyGly (K)	2785.3254	0.32537606	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	2					1				1	27.876	27.876	3;4	8.4947E-34	6282	20190902_JH_EV_Ubi_3	170.02	120.95	122830000	0	0	0	0	1312800	0	0	0	121520000			956	955	846	2667;2668	2807;2808	2807		914;916;917		2
EEEVQQQKLAEER	GlyGly (K)	1728.8279	0.82785588	1766	sp|Q96CS3|FAF2_HUMAN	yes	yes	0	0	1	0	1	1		1	1	1			1	1	22.231	22.231	3	0.0045281	4639	20190902_JH_EV_Ubi_2	88.803	37.517	43201000	6800600	0	7134400	4632600	4990400	0	0	11899000	7743700			957	1766	847	2669;2670;2671;2672;2673;2674	2809;2810;2811;2812;2813;2814	2810		1742		6
EEFASTCPDDEEIELAYEQVAK	Unmodified	2572.1163	0.11629449	121	sp|O00299|CLIC1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	47.254	47.254	3	2.4795E-11	12894	20190821_JH_WT_Ubi	123.54	76.879	7568100	0	0	3470500	0	0	0	0	2655800	1441800			958	121	848	2675;2676;2677	2815;2816;2817	2815				3
EEFAVPENSSVQQFKEEISK	GlyGly (K)	2438.1601	0.16014863	2175	sp|Q9UMX0-4|UBQL1_HUMAN;sp|Q9UMX0-2|UBQL1_HUMAN;sp|Q9UMX0|UBQL1_HUMAN	yes	no	0	0	1	0	1	1									41.034	41.034	3	0.03725	10589	20190821_JH_EV_Ubi	42.78	7.6039	3834000	3834000	0	0	0	0	0	0	0	0			959	2175	849	2678	2818	2818				1
EEFEHQQK	Unmodified	1073.4778	0.47778779	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	0	0	0	0			1							12.006	12.006	3	0.033806	2265	20190821_JH_WT_Ubi	62.717	19.594	3495700	0	0	3495700	0	0	0	0	0	0			960	519	850	2679	2819	2819				1
EEFEHQQKELEK	GlyGly (K)	1686.7849	0.78492843	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1		20.081	20.081	3	0.00014758	3431	20190821_JH_EV_Ubi	130.1	59.699	124080000	20006000	5048300	13686000	24207000	19846000	18403000	12154000	10733000	0			961	519	851	2680;2681;2682;2683;2684;2685;2686;2687	2820;2821;2822;2823;2824;2825;2826;2827	2820		511;512		8
EEFTAFLHPEEFEHMK	Oxidation (M)	2035.8986	0.89857798	1339	sp|Q15293|RCN1_HUMAN;sp|Q15293-2|RCN1_HUMAN	yes	no	0	0	0	1	0									1	38.671	38.671	4	0.032807	11045	20190902_JH_WT_Ubi_3	43.316	25.399	4701200	0	0	0	0	0	0	0	0	4701200			962	1339	852	2688	2828	2828				1
EEFTAFLHPEEYDYMK	Oxidation (M)	2063.8823	0.88225921	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-15|CALU_HUMAN;sp|O43852-10|CALU_HUMAN;sp|O43852-6|CALU_HUMAN	yes	no	0	0	0	1	0			1					1	1	41.852	41.852	3	0.023366	10710	20190821_JH_WT_Ubi	53.001	17.238	33104000	0	0	11484000	0	0	0	0	11232000	10389000			963	225	853	2689;2690;2691	2829;2830;2831	2829			93	3
EEGNPVASLGHSEAETPVDAYSNGQAALMGEKER	Oxidation (M);GlyGly (K);Deamidation (NQ)	3673.6438	0.64382644	954	sp|P53794|SC5A3_HUMAN	yes	yes	0	1	1	1	1	1						1			35.612	35.612	4	0.00028719	8716	20190821_JH_EV_Ubi	57.009	30.453	2888600	1738700	0	0	0	0	0	1149900	0	0			964	954	854	2692;2693	2832;2833	2832	320;946	912	599	2
EEGPYEVEVTYDGVPVPGSPFPLEAVAPTK	Unmodified	3172.5492	0.54922799	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	54.045	54.045	3	1.2311E-32	16132	20190902_JH_WT_Ubi_2	156.79	128.01	24728000	0	1511900	10794000	0	0	866720	0	6758800	4796600			965	637	855	2694;2695;2696;2697;2698	2834;2835;2836;2837;2838	2837				5
EEIQMSNMGSNTKSLDNNYSTPNER	2 Oxidation (M);GlyGly (K)	3004.2775	0.27745637	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	0	1	2	1	1	1		1	1	1	1	1	1	26.051	26.051	3	2.1952E-20	5054	20190821_JH_EV_Ubi	143.09	122.35	32931000	3515900	3263700	0	5230800	9548200	2527100	3618500	2802500	2424500			966	257	856	2699;2700;2701;2702;2703;2704;2705;2706	2839;2840;2841;2842;2843;2844;2845;2846	2839		236	108;109	8
EEIQMSNMGSNTKSLDNNYSTPNER	Oxidation (M);GlyGly (K)	2988.2825	0.28254174	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	0	1	1	1	2	2		1		1	1	1		28.59	28.59	3	7.0845E-12	5878	20190821_JH_EV_Ubi	111.25	89.6	13840000	4257100	2708400	0	1109400	0	1901800	1667600	2195700	0			967	257	856	2707;2708;2709;2710;2711;2712;2713;2714	2847;2848;2849;2850;2851;2852;2853;2854	2847		236	108;109	8
EEIQMSNMGSNTKSLDNNYSTPNER	GlyGly (K)	2972.2876	0.28762712	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	0	1	0	1	1	1				1				31.957	31.957	3	2.4512E-12	6645	20190821_JH_MUT_Ubi	118.05	94.757	3940800	1124900	1542900	0	0	0	1273000	0	0	0			968	257	856	2715;2716;2717	2855;2856;2857;2858	2857		236		4
EEIQMSNMGSNTKSLDNNYSTPNER	2 Oxidation (M);GlyGly (K);2 Deamidation (NQ)	3006.2455	0.24548754	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	2	1	2	1				1						27.472	27.472	3	2.1063E-06	6074	20190902_JH_EV_Ubi_2	87.748	55.981	617740	0	0	0	617740	0	0	0	0	0			969	257	856	2718	2859;2860	2859	83;84;85;86;87	236	108;109	2
EEIQMSNMGSNTKSLDNNYSTPNER	Oxidation (M);GlyGly (K);Deamidation (NQ)	2989.2666	0.26655733	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	1	1	1	1				1	1	1	1		1	28.949	28.949	3	5.6481E-06	7615	20190902_JH_WT_Ubi_3	92.518	64.554	3134500	0	0	0	0	0	739980	757560	0	1636900			970	257	856	2719;2720;2721;2722;2723	2861;2862;2863;2864;2865	2865	83;84;85;86;87	236	108;109	5
EEIQMSNMGSNTKSLDNNYSTPNER	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3005.2615	0.26147195	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	1	1	2	1			1		2	1	1			26.485	26.485	3	2.6546E-06	6105	20190902_JH_MUT_Ubi_2	90.978	70.495	5809000	0	0	0	0	1990100	2473100	1345800	0	0			971	257	856	2724;2725;2726;2727;2728	2866;2867;2868;2869;2870	2868	83;84;85;86;87	236	108;109	5
EEIQMSNMGSNTKSLDNNYSTPNER	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2990.2506	0.25057291	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	2	1	1	1					1					29.116	29.116	3	0.0203	6618	20190902_JH_EV_Ubi_3	50.827	35.512	0	0	0	0	0	0	0	0	0	0			972	257	856	2729	2871	2871	83;84;85;86;87	236	108;109	1
EEKETAEHENR	GlyGly (K)	1484.6492	0.64916323	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	1	0	1						1				9.9358	9.9358	3	0.0051532	2294	20190902_JH_MUT_Ubi_2	97.452	64.846	19580000	0	0	0	0	0	19580000	0	0	0			973	1630	857	2730	2872	2872		1628		1
EELDFQKNIYSEELR	GlyGly (K)	2025.9643	0.96434936	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1	1			1	1		1			37.584	37.584	3	5.3793E-16	9468	20190902_JH_MUT_Ubi_3	169.58	131.49	17667000	6051800	0	0	3386900	2260200	0	5967800	0	0			974	390;391	858	2731;2732;2733;2734	2873;2874;2875;2876	2876		357		4
EELEQTYHAKLENAR	GlyGly (K)	1943.9337	0.93371793	631	sp|P20700|LMNB1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			26.178	26.178	3	0.0016507	5702	20190902_JH_MUT_Ubi_3	92.295	49.826	28453000	3224800	4630400	3554700	2570400	5808600	3709200	4955200	0	0			975	631	859	2735;2736;2737;2738;2739;2740;2741	2877;2878;2879;2880;2881;2882;2883	2882		602		7
EELLKVAGSPGWVR	GlyGly (K)	1653.8839	0.88385462	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	36.609	36.609	3	3.9544E-15	10326	20190902_JH_WT_Ubi_3	166.62	123.83	221030000	41175000	20765000	21502000	31376000	25881000	25623000	21570000	15444000	17690000			976	462;463	860	2742;2743;2744;2745;2746;2747;2748;2749;2750	2884;2885;2886;2887;2888;2889;2890;2891;2892	2892		465		9
EELNKMETNKPR	Deamidation (NQ)	1488.7242	0.72424243	1531	sp|Q7Z478|DHX29_HUMAN	yes	yes	0	1	0	0	2									1	38.818	38.818	2	0.035208	11093	20190902_JH_WT_Ubi_3	53.751	8.8876	0	0	0	0	0	0	0	0	0	0			977	1531	861	2751	2893	2893	485			1
EELQANGSAPAADK	Deamidation (NQ)	1400.642	0.64195259	718	sp|P29966|MARCS_HUMAN	yes	yes	0	1	0	0	0				1						23.707	23.707	2	0.01056	5030	20190902_JH_EV_Ubi_2	80.17	24.62	614310	0	0	0	614310	0	0	0	0	0			978	718	862	2752	2894	2894	252			0
EELQANGSAPAADKEEPAAAGSGAASPSAAEK	GlyGly (K);Deamidation (NQ)	3096.412	0.41195924	718	sp|P29966|MARCS_HUMAN	yes	yes	0	1	1	0	1						1		1		27.741	27.741	3	1.2063E-06	7640	20190902_JH_WT_Ubi_2	90.211	64.803	1846300	0	0	0	0	0	386070	0	1460300	0			979	718	863	2753;2754	2895;2896	2896	252	697;698		2
EELRLQHEEDKK	Deamidation (NQ)	1553.7686	0.76855009	1628	sp|Q8NB25-4|F184A_HUMAN;sp|Q8NB25-2|F184A_HUMAN;sp|Q8NB25-3|F184A_HUMAN;sp|Q8NB25|F184A_HUMAN	yes	no	0	1	0	0	2									1	47.593	47.593	2	0.033513	13970	20190902_JH_WT_Ubi_3	55.567	11.25	0	0	0	0	0	0	0	0	0	0			980	1628	864	2755	2897	2897	1144			1
EENDLGLFGYWQTEEYQPPVAVDGKVPR	GlyGly (K)	3349.5891	0.58913574	1137	sp|Q01831-2|XPC_HUMAN;sp|Q01831|XPC_HUMAN	yes	no	0	0	1	0	1		1								50.061	50.061	3	0.0050432	13231	20190821_JH_MUT_Ubi	49.851	25.934	589740	0	589740	0	0	0	0	0	0	0			981	1137	865	2756	2898;2899	2899		1132		2
EENRHIRNEK	GlyGly (K);Deamidation (NQ)	1438.6913	0.69130282	2153	sp|Q9UKL3|C8AP2_HUMAN	yes	yes	0	1	1	0	2								1		33.02	33.02	3	0.016522	9445	20190902_JH_WT_Ubi_2	131.09	22.103	3248500	0	0	0	0	0	0	0	3248500	0			982	2153	866	2757	2900	2900	688	2015		0
EEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEK	GlyGly (K)	3317.5648	0.56477149	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.583	29.583	3	6.249E-40	6374	20190821_JH_EV_Ubi	155.92	122.94	74264000	9191800	3249100	5386700	7801700	9078500	6544600	5512000	10656000	16844000			983	718	867	2758;2759;2760;2761;2762;2763;2764;2765;2766	2901;2902;2903;2904;2905;2906;2907;2908;2909;2910	2901		698		10
EEPAEGAADLSSGPQSKNR	GlyGly (K)	2055.9457	0.94573918	1585	sp|Q8IY50|S35F3_HUMAN;sp|Q8IY50-2|S35F3_HUMAN	yes	no	0	0	1	0	1				1						24.181	24.181	3	0.025699	5106	20190902_JH_EV_Ubi_2	48.623	24.581	1184400	0	0	0	1184400	0	0	0	0	0			984	1585	868	2767	2911	2911		1585		1
EERQKQLQQQNEK	2 Deamidation (NQ)	1686.8173	0.81729119	101	sp|B2RTY4-5|MYO9A_HUMAN;sp|B2RTY4-2|MYO9A_HUMAN;sp|B2RTY4|MYO9A_HUMAN;sp|B2RTY4-4|MYO9A_HUMAN	yes	no	0	2	0	0	2				1						25.868	25.868	3	0.012207	5665	20190902_JH_EV_Ubi_2	72.29	10.003	1978700	0	0	0	1978700	0	0	0	0	0			985	101	869	2768	2912	2912	754;755			0
EESDDEAAVEEEEEEK	Unmodified	1865.7174	0.71742154	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0					1					26.914	26.914	2	2.4645E-52	5925	20190902_JH_EV_Ubi_3	209.67	193.1	2699300	0	0	0	0	2699300	0	0	0	0			986	557	870	2769	2913	2913				1
EETPGAGQKQELR	GlyGly (K)	1555.759	0.75904803	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	1	0	1	1	2	1	1	1	1				19.973	19.973	2;3	0.0019401	3097	20190821_JH_MUT_Ubi	108.35	63.595	384340000	64416000	28404000	81642000	109150000	42913000	57815000	0	0	0			987	1630	871	2770;2771;2772;2773;2774;2775;2776	2914;2915;2916;2917;2918;2919;2920	2917		1629		7
EEVGEEAIVELVENGK	Deamidation (NQ)	1743.8414	0.84144026	776	sp|P35579|MYH9_HUMAN	yes	yes	0	1	0	0	0					1					47.038	47.038	2	5.9802E-13	11813	20190902_JH_EV_Ubi_3	153.81	105.29	650630	0	0	0	0	650630	0	0	0	0			988	776	872	2777	2921	2921	274			1
EEVYQTAKAVR	GlyGly (K)	1406.7154	0.7153923	306	sp|O75911|DHRS3_HUMAN;sp|O75911-2|DHRS3_HUMAN	yes	no	0	0	1	0	1	1	1								23.011	23.011	3	0.030533	4068	20190821_JH_EV_Ubi	65.627	28.013	1033500	0	1033500	0	0	0	0	0	0	0			989	306	873	2778;2779	2922;2923	2922				2
EFALNNENYSLSNR	3 Deamidation (NQ)	1672.7217	0.72165947	1554	sp|Q86V48-2|LUZP1_HUMAN;sp|Q86V48-3|LUZP1_HUMAN;sp|Q86V48|LUZP1_HUMAN	yes	no	0	3	0	0	0								1		26.151	26.151	2	0.036229	7019	20190902_JH_WT_Ubi_2	43.297	9.4063	0	0	0	0	0	0	0	0	0	0			990	1554	874	2780	2924	2924	501;502;503			1
EFDPLGPLPPGWEKR	GlyGly (K)	1850.9315	0.93153309	1786	sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN	yes	no	0	0	1	0	1	1									42.652	42.652	3	0.0015477	11236	20190821_JH_EV_Ubi	95.981	40.002	1324100	1324100	0	0	0	0	0	0	0	0			991	1786	875	2781	2925	2925		1752		1
EFDPTITDASLSLPSR	Unmodified	1747.8628	0.8628444	1161	sp|Q05682-5|CALD1_HUMAN;sp|Q05682-3|CALD1_HUMAN;sp|Q05682-4|CALD1_HUMAN;sp|Q05682-6|CALD1_HUMAN;sp|Q05682-2|CALD1_HUMAN;sp|Q05682|CALD1_HUMAN	yes	no	0	0	0	0	0								1		45.253	45.253	2	5.1294E-33	13596	20190902_JH_WT_Ubi_2	192.15	134.8	1755000	0	0	0	0	0	0	0	1755000	0			992	1161	876	2782	2926	2926				1
EFDYVINDLTAVPISTSPEEDSTWEFLR	Unmodified	3272.5401	0.54011986	939	sp|P52788|SPSY_HUMAN;sp|P52788-2|SPSY_HUMAN	yes	no	0	0	0	0	0								1		56.716	56.716	3	0.0018381	16619	20190902_JH_WT_Ubi_2	52.192	33.288	733730	0	0	0	0	0	0	0	733730	0			993	939	877	2783	2927	2927				1
EFEVYGPIK	Unmodified	1080.5492	0.54916182	472	sp|P08621-2|RU17_HUMAN;sp|P08621|RU17_HUMAN;sp|P08621-3|RU17_HUMAN	yes	no	0	0	0	0	0								1		37.283	37.283	2	0.0069721	10915	20190902_JH_WT_Ubi_2	104.21	37.216	2705500	0	0	0	0	0	0	0	2705500	0			994	472	878	2784	2928	2928				1
EFHLNESGDPSSK	Unmodified	1445.6423	0.64228694	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN;sp|P0DME0|SETLP_HUMAN	yes	no	0	0	0	0	0			1		1			1		24.931	24.931	3	0.015736	4841	20190821_JH_WT_Ubi	65.043	31.955	16199000	0	0	6485400	0	1526500	0	0	8187400	0			995	1131	879	2785;2786;2787	2929;2930;2931	2930				3
EFHLNESGDPSSKSTEIK	GlyGly (K)	2117.9865	0.98654137	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN	yes	no	0	0	1	0	1		1		1		1	1	1		26.361	26.361	3;4	2.1973E-08	6056	20190902_JH_MUT_Ubi_2	126.91	81.032	14167000	0	1085200	0	1853800	0	1865600	5973400	3388600	0			996	1131	880	2788;2789;2790;2791;2792	2932;2933;2934;2935;2936	2934		1123;1124		5
EFIEFLKTFHK	Unmodified	1437.7656	0.76563696	2144	sp|Q9UJ41-2|RABX5_HUMAN;sp|Q9UJ41-4|RABX5_HUMAN;sp|Q9UJ41-3|RABX5_HUMAN;sp|Q9UJ41|RABX5_HUMAN	yes	no	0	0	0	0	1	1	1	1	1						33.105	33.105	3	0.0033585	7304	20190821_JH_WT_Ubi	123.11	42.872	199880000	30896000	23415000	125580000	19986000	0	0	0	0	0			997	2144	881	2793;2794;2795;2796	2937;2938;2939;2940	2940				4
EFLEKNYTDEAIETDDLTIK	GlyGly (K)	2500.1857	0.18569468	156	sp|O14818|PSA7_HUMAN;sp|O14818-2|PSA7_HUMAN	yes	no	0	0	1	0	1		1				1				40.813	40.813	3	6.741E-19	11381	20190902_JH_MUT_Ubi_2	157.42	100.25	4579500	0	1761800	0	0	0	2817600	0	0	0			998	156	882	2797;2798	2941;2942	2942		127		2
EFLSAKEETPGAGQK	GlyGly (K)	1704.8319	0.83187862	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	25.959	25.959	3	7.1566E-16	5117	20190821_JH_WT_Ubi	169.09	111.57	1583000000	135870000	113090000	155970000	201750000	164120000	177290000	162940000	252390000	219530000			999	1630	883	2799;2800;2801;2802;2803;2804;2805;2806;2807	2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953	2951		1629;1630		11
EFLSAKEETPGAGQK	GlyGly (K);Deamidation (NQ)	1705.8159	0.81589421	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	1	1	0	1				1	1	1	1			26.257	26.257	3	0.00156	5748	20190902_JH_EV_Ubi_3	109.15	52.039	56449000	0	0	0	19389000	15593000	9439100	12028000	0	0			1000	1630	883	2808;2809;2810;2811	2954;2955;2956;2957	2955	1145	1629;1630		4
EFLSAKEETPGAGQKQELR	2 GlyGly (K)	2345.1612	0.16115169	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	2	0	2	1	1		1	1	1	1	1	1	26.805	26.805	3	3.7128E-29	5859	20190902_JH_EV_Ubi_3	177.66	133.41	19989000	2872800	1176100	0	3278100	2288700	2755400	1487800	3713500	2417000			1001	1630	884	2812;2813;2814;2815;2816;2817;2818;2819	2958;2959;2960;2961;2962;2963;2964;2965;2966;2967	2960		1629;1630		10
EFPGFLENQKDPLAVDK	GlyGly (K)	2060.0215	0.021470309	1004	sp|P60903|S10AA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	41.508	41.508	3	8.3675E-14	10597	20190821_JH_WT_Ubi	151.07	113.41	326040000	57505000	41605000	33826000	30541000	43506000	47729000	33246000	18080000	20005000			1002	1004	885	2820;2821;2822;2823;2824;2825;2826;2827;2828	2968;2969;2970;2971;2972;2973;2974;2975;2976	2974		993		9
EFSITDVVPYPISLR	Unmodified	1734.9192	0.91923707	767	sp|P34932|HSP74_HUMAN	yes	yes	0	0	0	0	0		1								54.115	54.115	2	0.0050237	14432	20190821_JH_MUT_Ubi	80.318	43.625	1357300	0	1357300	0	0	0	0	0	0	0			1003	767	886	2829	2977	2977				1
EFSNVSVGKLVEAGCVANNAVIR	GlyGly (K);Deamidation (NQ)	2547.2751	0.27513559	274	sp|O75185|AT2C2_HUMAN;sp|O75185-3|AT2C2_HUMAN;sp|O75185-2|AT2C2_HUMAN	yes	no	0	1	1	0	1						1				41.851	41.851	3	0.01945	11941	20190902_JH_MUT_Ubi_2	72.801	39.776	711560	0	0	0	0	0	711560	0	0	0			1004	274	887	2830	2978	2978	96	263		1
EFSNVSVGKLVEAGCVANNAVIR	GlyGly (K)	2546.2911	0.29112	274	sp|O75185|AT2C2_HUMAN;sp|O75185-3|AT2C2_HUMAN;sp|O75185-2|AT2C2_HUMAN	yes	no	0	0	1	0	1			1						1	42.062	42.062	3	4.8847E-17	10871	20190821_JH_WT_Ubi	146.28	112.6	8798600	0	0	6328100	0	0	0	0	0	2470500			1005	274	887	2831;2832	2979;2980	2979		263		2
EFTEAVEAK	Unmodified	1022.492	0.49204087	771	sp|P35232|PHB_HUMAN	yes	yes	0	0	0	0	0			1					1		26.414	26.414	1	0.010014	7137	20190902_JH_WT_Ubi_2	100.02	22.095	2506900	0	0	679840	0	0	0	0	1827000	0			1006	771	888	2833;2834	2981;2982	2982				1
EFVGGNTPNVLTLVDNWYQVTQGIGR	Unmodified	2876.4457	0.44570639	1860	sp|Q9BQE5|APOL2_HUMAN	yes	yes	0	0	0	0	0								1		57.423	57.423	3	0.00072232	16739	20190902_JH_WT_Ubi_2	65.023	38.184	714340	0	0	0	0	0	0	0	714340	0			1007	1860	889	2835	2983	2983				1
EFYYDEKEIER	GlyGly (K)	1633.726	0.72601657	1650	sp|Q8NEY4-2|VATC2_HUMAN;sp|Q8NEY4|VATC2_HUMAN	yes	no	0	0	1	0	1						1	1			30.182	30.182	3	0.018724	7043	20190902_JH_MUT_Ubi_3	73.885	39.135	38021000	0	0	0	0	0	12577000	25444000	0	0			1008	1650	890	2836;2837	2984;2985	2985		1649		2
EGAAHAFAQYNLDQFTPVK	Unmodified	2106.0171	0.017053633	864	sp|P47755-2|CAZA2_HUMAN;sp|P47755|CAZA2_HUMAN	yes	no	0	0	0	0	0			1							40.066	40.066	3	0.0011477	9981	20190821_JH_WT_Ubi	74.519	42.871	2617900	0	0	2617900	0	0	0	0	0	0			1009	864	891	2838	2986	2986				1
EGAKLECGGSAMEDK	Oxidation (M);GlyGly (K)	1710.7189	0.71889906	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	1	1								1	1	18.545	18.545	3	0.00054049	4650	20190902_JH_WT_Ubi_2	106.55	83.695	9663000	0	0	0	0	0	0	0	5610200	4052800			1010	865	892	2839;2840	2987;2988	2987		838;839	546	2
EGCEAIVDTGTSLMVGPVDEVR	Oxidation (M)	2349.0828	0.082826291	445	sp|P07339|CATD_HUMAN	yes	yes	0	0	0	1	0								1		43.241	43.241	3	3.0663E-11	12937	20190902_JH_WT_Ubi_2	123.43	90.452	1385600	0	0	0	0	0	0	0	1385600	0			1011	445	893	2841	2989	2989			247	1
EGDVLTLLESER	Unmodified	1359.6882	0.6881745	1065	sp|P62857|RS28_HUMAN	yes	yes	0	0	0	0	0	1		1							46.209	46.209	2	6.2937E-49	12443	20190821_JH_WT_Ubi	238.73	88.691	12647000	1556200	0	11091000	0	0	0	0	0	0			1012	1065	894	2842;2843	2990;2991	2991				0
EGHQVALLSGEMMVEQR	2 Oxidation (M)	1944.9033	0.90334578	2036	sp|Q9UMR2-2|DD19B_HUMAN;sp|Q9UMR2-4|DD19B_HUMAN;sp|Q9NUU7|DD19A_HUMAN;sp|Q9UMR2|DD19B_HUMAN;sp|Q9UMR2-3|DD19B_HUMAN;sp|Q9NUU7-2|DD19A_HUMAN	yes	no	0	0	0	2	0								1		29.578	29.578	3	0.030928	8206	20190902_JH_WT_Ubi_2	50.053	12.025	0	0	0	0	0	0	0	0	0	0			1013	2036	895	2844	2992	2992			1094;1095	1
EGICALGGTSELSSEGTQHSYSEEEK	Unmodified	2784.2032	0.20321202	547	sp|P13797-3|PLST_HUMAN;sp|P13797-2|PLST_HUMAN;sp|P13797|PLST_HUMAN	yes	no	0	0	0	0	0			1					1	1	32.86	32.86	3	9.0262E-05	8998	20190902_JH_WT_Ubi_3	78.057	53.512	15510000	0	0	4448300	0	0	0	0	5336100	5725600			1014	547	896	2845;2846;2847	2993;2994;2995;2996	2995				4
EGILNDDIYCPPETAVLLASYAVQSK	Unmodified	2865.4106	0.41062602	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	0	0	0			1						1	55.171	55.171	3	0.00066353	15840	20190821_JH_WT_Ubi	66.019	36.635	4804900	0	0	3656600	0	0	0	0	0	1148200			1015	686	897	2848;2849	2997;2998	2997				2
EGILSDEIYCPPETAVLLGSYAVQAK	Unmodified	2822.4048	0.40481236	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	0	0	0		1	1			1			1	54.173	54.173	3	5.0211E-10	15494	20190821_JH_WT_Ubi	101	73.055	23011000	0	1237300	15277000	0	0	616510	0	0	5880600			1016	568	898	2850;2851;2852;2853	2999;3000;3001;3002;3003	3002				5
EGINIFLDGYVPTENLR	Unmodified	1948.9894	0.9894419	1019	sp|P61221|ABCE1_HUMAN	yes	yes	0	0	0	0	0		1								52.206	52.206	2	0.0024195	13796	20190821_JH_MUT_Ubi	80.312	34.153	581870	0	581870	0	0	0	0	0	0	0			1017	1019	899	2854	3004	3004				1
EGLDISHLQGQEELLSSQEKSPGTK	GlyGly (K)	2823.3886	0.38864502	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1		1								36.633	36.633	3	2.0797E-06	8334	20190821_JH_MUT_Ubi	87.748	35.43	2444000	0	2444000	0	0	0	0	0	0	0			1018	970	900	2855	3005	3005		941;942		1
EGLLAIFKSGGIPALVK	GlyGly (K)	1826.0666	0.066570008	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1		1	49.624	49.624	3	0.00022491	14215	20190902_JH_MUT_Ubi_2	103.3	60.908	17404000	0	5808400	3045000	0	0	3643100	2584700	0	2323100			1019	770	901	2856;2857;2858;2859;2860	3006;3007;3008;3009;3010	3007		754		5
EGLTSIEEVTK	Unmodified	1204.6187	0.61869795	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1							34.163	34.163	2	0.0025942	7692	20190821_JH_WT_Ubi	109.83	53.396	10845000	0	0	10845000	0	0	0	0	0	0			1020	1332	902	2861	3011	3011				0
EGNDLYHEMIESGVINLK	Oxidation (M)	2075.9834	0.98337024	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	1	0									1	37.944	37.944	3	0.0011858	10794	20190902_JH_WT_Ubi_3	79.347	46.43	6447000	0	0	0	0	0	0	0	0	6447000			1021	433	903	2862	3012	3012			226	1
EGNPEEDLTADK	Unmodified	1316.5732	0.57320432	807	sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN	yes	no	0	0	0	0	0			1							26.68	26.68	2	0.002493	5294	20190821_JH_WT_Ubi	96.229	69.537	6643900	0	0	6643900	0	0	0	0	0	0			1022	807	904	2863	3013	3013				0
EGPIDLGACNQDDWISAVRPVIEKR	GlyGly (K)	2951.456	0.4559535	2242	sp|Q9Y5K5-3|UCHL5_HUMAN;sp|Q9Y5K5|UCHL5_HUMAN;sp|Q9Y5K5-2|UCHL5_HUMAN;sp|Q9Y5K5-4|UCHL5_HUMAN	yes	no	0	0	1	0	2	1									44.061	44.061	4	0.00029459	11723	20190821_JH_EV_Ubi	73.722	49.17	2699500	2699500	0	0	0	0	0	0	0	0			1023	2242	905	2864	3014	3014		2080		1
EGPYDVVVLPGGNLGAQNLSESAAVK	Unmodified	2583.318	0.31804626	1835	sp|Q99497|PARK7_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	47.523	47.523	3	1.3028E-13	13050	20190821_JH_WT_Ubi	122.59	84.874	43231000	2452100	0	16743000	1128200	818340	0	0	7293100	14796000			1024	1835	906	2865;2866;2867;2868;2869;2870	3015;3016;3017;3018;3019;3020;3021;3022	3019				8
EGQNWLEKK	2 Deamidation (NQ)	1132.5401	0.5400537	1906	sp|Q9BY50|SC11C_HUMAN	yes	yes	0	2	0	0	1							1			10.484	10.484	3	0.028735	2380	20190902_JH_MUT_Ubi_3	62.582	6.5687	301960	0	0	0	0	0	0	301960	0	0			1025	1906	907	2871	3023	3023	606;1235			0
EGQVEVLKATEMVEVGADDDEGGAER	Oxidation (M);GlyGly (K)	2862.2825	0.28252497	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN;sp|Q6NZI2-3|CAVN1_HUMAN	yes	no	0	0	1	1	1	1	1	1					1		36.532	36.532	3	5.0507E-64	10662	20190902_JH_WT_Ubi_2	203.29	171.47	9988100	1174000	772390	4756600	0	0	0	0	3285100	0			1026	1476	908	2872;2873;2874;2875	3024;3025;3026;3027;3028	3028		1487	902	5
EGQVEVLKATEMVEVGADDDEGGAER	GlyGly (K)	2846.2876	0.28761035	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN;sp|Q6NZI2-3|CAVN1_HUMAN	yes	no	0	0	1	0	1		1	1			1	1			40.295	40.295	3	6.7289E-45	9743	20190821_JH_MUT_Ubi	182.62	134.37	10975000	0	1515400	7594600	0	0	1016200	849180	0	0			1027	1476	908	2876;2877;2878;2879	3029;3030;3031;3032	3029		1487		4
EGTDSSQGIPQLVSNISACQVIAEAVR	Unmodified	2828.3974	0.39743557	1850	sp|Q99832|TCPH_HUMAN	yes	yes	0	0	0	0	0			1						1	53.17	53.17	3	3.9915E-16	15379	20190902_JH_WT_Ubi_3	129.52	83.641	5807300	0	0	4782600	0	0	0	0	0	1024700			1028	1850	909	2880;2881	3033;3034	3034				2
EGTEASASKGLEK	GlyGly (K)	1419.6842	0.68415175	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN	yes	no	0	0	1	0	1					1					17.42	17.42	2	0.020954	3612	20190902_JH_EV_Ubi_3	78.342	16.65	455930	0	0	0	0	455930	0	0	0	0			1029	1676	910	2882	3035	3035		1673		0
EGVCAASLPTTMGVVAGILVQNVLK	Oxidation (M)	2542.3499	0.34988044	1923	sp|Q9GZZ9-2|UBA5_HUMAN;sp|Q9GZZ9|UBA5_HUMAN	yes	no	0	0	0	1	0	1									53.878	53.878	3	0.0024552	14415	20190821_JH_EV_Ubi	75.703	44.188	4070900	4070900	0	0	0	0	0	0	0	0			1030	1923	911	2883	3036	3036			1049	0
EGVCAASLPTTMGVVAGILVQNVLK	Unmodified	2526.355	0.35496581	1923	sp|Q9GZZ9-2|UBA5_HUMAN;sp|Q9GZZ9|UBA5_HUMAN	yes	no	0	0	0	0	0	1									57.738	57.738	3	0.021727	14971	20190821_JH_EV_Ubi	55.988	28.545	642040	642040	0	0	0	0	0	0	0	0			1031	1923	911	2884	3037	3037				0
EGVDAEQRMQPK	Oxidation (M);2 Deamidation (NQ)	1404.6191	0.61910866	318	sp|O94885|SASH1_HUMAN	yes	yes	0	2	0	1	1					1					26.684	26.684	2	0.03286	5845	20190902_JH_EV_Ubi_3	47.603	19.778	2721600	0	0	0	0	2721600	0	0	0	0			1032	318	912	2885	3038	3038	800;801			0
EGVVGPELHHK	Unmodified	1200.6251	0.62512073	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1					1		19.169	19.169	3	0.027673	3509	20190821_JH_WT_Ubi	59.067	16.469	2663400	0	0	2663400	0	0	0	0	0	0			1033	1332	913	2886;2887	3039;3040	3039				2
EHALAQAELLKR	GlyGly (K)	1491.8158	0.81577505	173	sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	2	25.367	25.367	2;3	3.9318E-61	6558	20190902_JH_WT_Ubi_3	245.08	164.91	239200000	23338000	17101000	25242000	15733000	30282000	28070000	35950000	34346000	29142000			1034	173	914	2888;2889;2890;2891;2892;2893;2894;2895;2896;2897	3041;3042;3043;3044;3045;3046;3047;3048;3049;3050	3050		146		9
EHALLAYTLGVK	Unmodified	1313.7343	0.73433683	1096;1160	sp|P68104|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN;sp|Q05639|EF1A2_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	35.996	35.996	3	6.9389E-18	10091	20190902_JH_WT_Ubi_3	180.66	129.13	218740000	2088400	7361100	67367000	909360	929200	12737000	8590200	62489000	56269000			1035	1096;1160	915	2898;2899;2900;2901;2902;2903;2904;2905;2906	3051;3052;3053;3054;3055;3056;3057;3058;3059	3059				9
EHDKSGEEEQGAEEGPGVPAATTEDHIQVEAR	GlyGly (K)	3515.5673	0.56729068	1709	sp|Q92508|PIEZ1_HUMAN	yes	yes	0	0	1	0	1		1				1	1			28.056	28.056	4	2.1424E-12	5292	20190821_JH_MUT_Ubi	109.08	81.072	7453800	0	2384100	0	0	0	3105300	1964400	0	0			1036	1709	916	2907;2908;2909	3060;3061;3062	3060		1702		3
EHDLPMVALEQMQGFNPGLNGTDR	2 Oxidation (M);Deamidation (NQ)	2701.2112	0.2112147	233	sp|O60266-2|ADCY3_HUMAN;sp|O60266|ADCY3_HUMAN	yes	no	0	1	0	2	0		1								33.055	33.055	3	0.023112	6953	20190821_JH_MUT_Ubi	44.105	16.61	1465200	0	1465200	0	0	0	0	0	0	0			1037	233	917	2910	3063	3063	780		100;101	1
EHEVTIFVR	Unmodified	1128.5928	0.59275797	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	0	0	0			1							29.824	29.824	3	0.01356	6266	20190821_JH_WT_Ubi	76.827	17.477	1789700	0	0	1789700	0	0	0	0	0	0			1038	946	918	2911	3064	3064				1
EHFQDDVFNEK	Unmodified	1406.6103	0.61025853	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0								1	1	28.832	28.832	3	0.017079	7610	20190902_JH_WT_Ubi_3	69.261	33.597	11629000	0	0	0	0	0	0	0	5913200	5715800			1039	845	919	2912;2913	3065;3066	3066				2
EHIAASVSIPSEKQR	GlyGly (K)	1764.9119	0.91186028	854	sp|P46379-4|BAG6_HUMAN;sp|P46379-5|BAG6_HUMAN;sp|P46379-2|BAG6_HUMAN;sp|P46379|BAG6_HUMAN;sp|P46379-3|BAG6_HUMAN	yes	no	0	0	1	0	1	2	1	1							25.026	25.026	3;4	0.0018114	4227	20190821_JH_MUT_Ubi	90.759	32.965	7963600	3831300	1881400	2250900	0	0	0	0	0	0			1040	854	920	2914;2915;2916;2917	3067;3068;3069;3070	3069		831		3
EHINLGCDMDFDIAGPSIR	Oxidation (M)	2174.9725	0.97248798	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	1	0			1	1					1	39.992	39.992	3	1.9761E-13	10010	20190821_JH_WT_Ubi	141.07	98.735	12894000	0	0	7846500	540410	0	0	0	0	4506700			1041	640	921	2918;2919;2920	3071;3072;3073	3072			393	2
EHINLGCDMDFDIAGPSIR	Unmodified	2158.9776	0.97757336	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	0	0			1							44.007	44.007	3	0.00016493	11632	20190821_JH_WT_Ubi	90.872	43.366	5950800	0	0	5950800	0	0	0	0	0	0			1042	640	921	2921	3074	3074				1
EHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVER	GlyGly (K)	4123.9035	0.9035466	1379	sp|Q16625-4|OCLN_HUMAN;sp|Q16625-3|OCLN_HUMAN;sp|Q16625|OCLN_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1				45.368	45.368	4	2.9899E-08	12282	20190821_JH_EV_Ubi	86.492	67.873	66971000	24460000	23051000	0	3240400	2629400	13590000	0	0	0			1043	1379	922	2922;2923;2924;2925;2926	3075;3076;3077;3078;3079	3075		1417		5
EHLALLAVPMVPLQIILPLIISK	Oxidation (M)	2536.543	0.54302458	123	sp|O00400|ACATN_HUMAN	yes	yes	0	0	0	1	0			1							57.537	57.537	3	0.018324	16316	20190821_JH_WT_Ubi	46.595	38.209	753100	0	0	753100	0	0	0	0	0	0			1044	123	923	2927	3080	3080			56	1
EHMDAINHDTKELEKMTNR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2458.0853	0.085285907	2195	sp|Q9UQE7|SMC3_HUMAN	yes	yes	0	1	1	2	2		1								44.714	44.714	3	0.013528	11355	20190821_JH_MUT_Ubi	55.33	16.913	2303300	0	2303300	0	0	0	0	0	0	0			1045	2195	924	2928	3081	3081	700	2051	1138;1139	1
EHVNVVFIGHVDAGK	Unmodified	1619.842	0.8419898	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|P15170|ERF3A_HUMAN;sp|Q8IYD1|ERF3B_HUMAN	yes	no	0	0	0	0	0	1	1								31.104	31.104	3	0.00019391	6832	20190821_JH_EV_Ubi	108.97	70.571	4556100	2779200	1776900	0	0	0	0	0	0	0			1046	566	925	2929;2930	3082;3083	3082				2
EHYVDLKDRPFFAGLVK	GlyGly (K)	2147.1164	0.11637375	652;573	sp|P22392-2|NDKB_HUMAN;sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	no	no	0	0	1	0	2								1	1	36.69	36.69	4	0.024927	10323	20190902_JH_WT_Ubi_3	48.214	15.288	26876000	0	0	0	0	0	0	0	9926400	16950000			1047	652;573	926	2931;2932	3084;3085	3085		564		2
EIAEAYLGKTVTNAVVTVPAYFNDSQR	GlyGly (K)	3069.5407	0.54072899	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	0	1			1							48.064	48.064	3	0.00063734	13256	20190821_JH_WT_Ubi	66.372	31.687	1598300	0	0	1598300	0	0	0	0	0	0			1048	519	927	2933	3086	3086		513		1
EIAEAYLGYPVTNAVITVPAYFNDSQR	Unmodified	3000.4869	0.4869025	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN	yes	no	0	0	0	0	0			1							54.051	54.051	3	1.0359E-12	15469	20190821_JH_WT_Ubi	113.52	67.828	4917500	0	0	4917500	0	0	0	0	0	0			1049	503	928	2934	3087	3087				1
EIALKELEK	GlyGly (K)	1185.6605	0.66050319	1517	sp|Q7KYR7-6|BT2A1_HUMAN;sp|Q7KYR7-4|BT2A1_HUMAN;sp|Q7KYR7-3|BT2A1_HUMAN;sp|Q7KYR7-5|BT2A1_HUMAN;sp|Q7KYR7|BT2A1_HUMAN;sp|Q7KYR7-1|BT2A1_HUMAN	yes	no	0	0	1	0	1	1								1	29.325	29.325	3	0.016005	6254	20190821_JH_EV_Ubi	82.75	26.317	3461300	493350	0	0	0	0	0	0	0	2968000			1050	1517	929	2935;2936	3088;3089	3088		1514		2
EIAQDFKTDLR	GlyGly (K)	1448.726	0.72595699	1101;1514	sp|P68431|H31_HUMAN;sp|Q16695|H31T_HUMAN;sp|P84243|H33_HUMAN;sp|Q71DI3|H32_HUMAN	no	no	0	0	1	0	1						1			1	30.448	30.448	3	0.0037198	8265	20190902_JH_WT_Ubi_3	95.483	51.28	3827000	0	0	0	0	0	3827000	0	0	0			1051	1101;1514	930	2937;2938	3090;3091	3091		1100		2
EIEDAAQFATADPEPPLEELGYHIYSSDPPFEVR	Unmodified	3831.7792	0.77918094	467	sp|P08559|ODPA_HUMAN;sp|P08559-4|ODPA_HUMAN;sp|P08559-3|ODPA_HUMAN;sp|P08559-2|ODPA_HUMAN	yes	no	0	0	0	0	0			1					1		53.458	53.458	3	0.00026177	15901	20190902_JH_WT_Ubi_2	55.984	30.166	1086800	0	0	0	0	0	0	0	1086800	0			1052	467	931	2939;2940	3092;3093	3093				2
EIEDFDSLEALR	Unmodified	1435.6831	0.68308912	851	sp|P46060|RAGP1_HUMAN	yes	yes	0	0	0	0	0									1	44.214	44.214	2	0.030683	12919	20190902_JH_WT_Ubi_3	60.102	13.974	639030	0	0	0	0	0	0	0	0	639030			1053	851	932	2941	3094	3094				0
EIEKESDGGHSQKESEAEEIDSEK	3 GlyGly (K)	3031.3126	0.31263912	1727	sp|Q92834|RPGR_HUMAN	yes	yes	0	0	3	0	2							1			27.438	27.438	4	0.01547	6167	20190902_JH_MUT_Ubi_3	50.87	20.402	1032700	0	0	0	0	0	0	1032700	0	0			1054	1727	933	2942	3095	3095		1721;1722;1723		0
EIENKAIQDPR	GlyGly (K);2 Deamidation (NQ)	1427.6892	0.68923713	387	sp|P01833|PIGR_HUMAN	yes	yes	0	2	1	0	1						1				40.016	40.016	2	0.031999	11140	20190902_JH_MUT_Ubi_2	51.949	14.884	356140	0	0	0	0	0	356140	0	0	0			1055	387	934	2943	3096	3096	125;812			0
EIEQEAAVELSQLR	Unmodified	1613.8261	0.82606496	868	sp|P47985|UCRI_HUMAN	yes	yes	0	0	0	0	0			1					1		41.811	41.811	3	1.0808E-07	10632	20190821_JH_WT_Ubi	143.25	70.909	2944500	0	0	1484200	0	0	0	0	1460300	0			1056	868	935	2944;2945	3097;3098	3097				1
EIIDLVLDR	Unmodified	1084.6128	0.61282471	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	0	0			1							46.461	46.461	2	0.014387	12559	20190821_JH_WT_Ubi	96.668	46.036	23864000	0	0	23864000	0	0	0	0	0	0			1057	1097;1515;1858	936	2946	3099	3099				0
EIIQDVTLHDLDVANAR	Unmodified	1920.9905	0.99050453	2201	sp|Q9Y265|RUVB1_HUMAN;sp|Q9Y265-2|RUVB1_HUMAN	yes	no	0	0	0	0	0			1							41.065	41.065	3	0.0015233	10394	20190821_JH_WT_Ubi	79.771	44.567	5064700	0	0	5064700	0	0	0	0	0	0			1058	2201	937	2947	3100	3100				1
EIKSQQSEVTR	GlyGly (K)	1417.7161	0.71612058	1937	sp|Q9H299|SH3L3_HUMAN	yes	yes	0	0	1	0	1				1		1		1		17.015	17.015	3	0.029658	3587	20190902_JH_EV_Ubi_2	64.439	24.521	20601000	0	0	0	2121500	0	4213900	0	14265000	0			1059	1937	938	2948;2949;2950	3101;3102;3103	3101		1876		3
EILKIDGSNTVDHKNEIK	3 GlyGly (K);Deamidation (NQ)	2395.1979	0.19793112	1597	sp|Q8IZH2-2|XRN1_HUMAN;sp|Q8IZH2|XRN1_HUMAN	yes	no	0	1	3	0	2	1									32.602	32.602	4	0.01308	7430	20190821_JH_EV_Ubi	55.011	8.3897	12012000	12012000	0	0	0	0	0	0	0	0			1060	1597	939	2951	3104	3104	520	1590;1591;1592		1
EILQHNEMK	Oxidation (M);2 Deamidation (NQ)	1158.5227	0.52268908	62		yes	no	0	2	0	1	0						1				28.763	28.763	3	0.032515	6861	20190902_JH_MUT_Ubi_2	51.193	14.746	28027000	0	0	0	0	0	28027000	0	0	0	+		1061	62	940	2952	3105	3105	20;732			0
EILTKESNVQEVR	GlyGly (K)	1657.8635	0.8635131	1054;1089	sp|P62714|PP2AB_HUMAN;sp|P67775-2|PP2AA_HUMAN;sp|P67775|PP2AA_HUMAN	no	no	0	0	1	0	1	1	1	1							26.077	26.077	3	0.0017924	4997	20190821_JH_EV_Ubi	103.14	50.58	15153000	4603200	5888200	4661100	0	0	0	0	0	0			1062	1054;1089	941	2953;2954;2955	3106;3107;3108	3106		1030		3
EILTLLQGVHQGAGFQDIPK	Unmodified	2163.1688	0.16880325	1356	sp|Q15631-2|TSN_HUMAN;sp|Q15631|TSN_HUMAN	yes	no	0	0	0	0	0	1	1	1	1				1	1	44.784	44.784	3	1.9995E-05	13488	20190902_JH_WT_Ubi_2	103.66	71.765	16053000	2450000	1213400	6414100	586640	0	0	0	2471000	2918200			1063	1356	942	2956;2957;2958;2959;2960;2961	3109;3110;3111;3112;3113;3114	3113				6
EILTLLQGVHQGAGFQDIPKR	GlyGly (K)	2433.3128	0.31284172	1356	sp|Q15631-2|TSN_HUMAN;sp|Q15631|TSN_HUMAN	yes	no	0	0	1	0	1		1				1	1			40.017	40.017	3	1.0455E-21	9704	20190821_JH_MUT_Ubi	151.28	129.43	2907600	0	1666500	0	0	0	725500	515530	0	0			1064	1356	943	2962;2963;2964	3115;3116;3117	3115		1402		3
EILVGDVGQTVDDPYATFVK	Unmodified	2165.0892	0.089215523	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	0	0	0	1			1	1		1	1	1	48.473	48.473	3	7.8044E-14	14193	20190902_JH_WT_Ubi_3	141.07	108.57	28699000	1748000	0	0	1718200	1283700	0	815840	11786000	11347000			1065	667	944	2965;2966;2967;2968;2969;2970	3118;3119;3120;3121;3122;3123;3124	3124				7
EILVGDVGQTVDDPYATFVKMLPDK	Oxidation (M);GlyGly (K)	2879.4263	0.42627608	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	1	1	1		1				1			1	48.419	48.419	3	1.2202E-07	14165	20190902_JH_WT_Ubi_3	98.684	66.925	4071000	0	814590	0	0	0	1271900	0	0	1984600			1066	667	945	2971;2972;2973	3125;3126;3127	3127		640;641	413	3
EILVGDVGQTVDDPYATFVKMLPDK	GlyGly (K)	2863.4314	0.43136146	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	1	0	1		1								52.527	52.527	3	0.00017242	13912	20190821_JH_MUT_Ubi	77.584	51.66	1528700	0	1528700	0	0	0	0	0	0	0			1067	667	945	2974	3128	3128		640;641		1
EILVGDVGVTITDPFK	Unmodified	1701.9189	0.91890272	1006	sp|P60981|DEST_HUMAN;sp|P60981-2|DEST_HUMAN	yes	no	0	0	0	0	0							1			51.082	51.082	2	0.0023811	13300	20190902_JH_MUT_Ubi_3	91.123	54.805	390200	0	0	0	0	0	0	390200	0	0			1068	1006	946	2975	3129	3129				0
EISEGDEVEVYSR	Unmodified	1510.6787	0.67873203	914	sp|P51114|FXR1_HUMAN;sp|P51114-2|FXR1_HUMAN	yes	no	0	0	0	0	0								1		31.928	31.928	2	0.01484	9055	20190902_JH_WT_Ubi_2	71.555	35.221	950530	0	0	0	0	0	0	0	950530	0			1069	914	947	2976	3130	3130				0
EISLWFKPEELVDYK	Unmodified	1894.9717	0.97166657	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN	yes	no	0	0	0	0	1								1		48.605	48.605	3	0.019032	14632	20190902_JH_WT_Ubi_2	79.744	54.622	5167700	0	0	0	0	0	0	0	5167700	0			1070	652	948	2977	3131	3131				1
EITALAPSTMK	Oxidation (M)	1176.606	0.60602477	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	0	1	0				1					1	28.722	28.722	2	0.017818	6685	20190902_JH_EV_Ubi_2	75.378	26.282	464410000	0	0	0	0	0	0	0	0	464410000			1071	1000;1087;1094	949	2978;2979	3132;3133	3132			617	2
EITALAPSTMKIK	Oxidation (M);GlyGly (K)	1531.828	0.82797922	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	1	1	1	1	1		1	1	1	1	1		28.362	28.362	3	0.0031661	5406	20190821_JH_MUT_Ubi	98.407	53.865	203080000	18765000	22009000	0	21755000	19982000	38091000	33795000	48680000	0			1072	1000;1087;1094	950	2980;2981;2982;2983;2984;2985;2986	3134;3135;3136;3137;3138;3139;3140	3137		981;982	617	7
EITALAPSTMKIK	GlyGly (K)	1515.8331	0.8330646	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	1	0	1	1	1	1		1	1	2	1	1	32.544	32.544	2;3	0.0011951	8157	20190902_JH_MUT_Ubi_2	107.09	60.133	99854000	3993200	11575000	15013000	0	3151900	15066000	19397000	16044000	15614000			1073	1000;1087;1094	950	2987;2988;2989;2990;2991;2992;2993;2994;2995	3141;3142;3143;3144;3145;3146;3147;3148;3149	3144		981;982		8
EIVHIQAGQCGNQIGTK	Unmodified	1851.9261	0.92613014	1878	sp|Q9BUF5|TBB6_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1		1	1		27.798	27.798	3	3.317E-19	7655	20190902_JH_WT_Ubi_2	161.08	102.45	31710000	3663700	1767300	8986600	2749000	2893500	0	2359200	9290700	0			1074	1878	951	2996;2997;2998;2999;3000;3001;3002	3150;3151;3152;3153;3154;3155;3156	3156				7
EIVHLQAGQCGNQIGAK	Unmodified	1821.9156	0.91556545	1099	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	27.776	27.776	3	8.0087E-230	6188	20190902_JH_MUT_Ubi_3	324.94	0	561760000	44298000	19193000	116750000	39066000	53876000	15472000	25757000	103230000	144120000			1075	1099	952	3003;3004;3005;3006;3007;3008;3009;3010;3011	3157;3158;3159;3160;3161;3162;3163;3164;3165	3162				9
EIVVTDYSDQNLQELEK	Unmodified	2021.9793	0.97933072	810	sp|P40261|NNMT_HUMAN	yes	yes	0	0	0	0	0								1	1	41.314	41.314	3	3.9631E-10	12347	20190902_JH_WT_Ubi_2	136.63	97.853	4125200	0	0	0	0	0	0	0	1571000	2554100			1076	810	953	3012;3013	3166;3167	3166				2
EIWDMFGVFFANHPDLR	Oxidation (M)	2108.9778	0.97783136	291	sp|O75489|NDUS3_HUMAN	yes	yes	0	0	0	1	0								1		53.566	53.566	3	0.008833	15934	20190902_JH_WT_Ubi_2	63.29	18.834	2216800	0	0	0	0	0	0	0	2216800	0			1077	291	954	3014	3168	3168			133	1
EIYTHFTCATDTK	Unmodified	1585.7083	0.70825802	478;415	sp|P08754|GNAI3_HUMAN;sp|P63096-2|GNAI1_HUMAN;sp|P63096|GNAI1_HUMAN;sp|P04899-6|GNAI2_HUMAN;sp|P04899-3|GNAI2_HUMAN;sp|P04899-5|GNAI2_HUMAN;sp|P04899-2|GNAI2_HUMAN;sp|P04899|GNAI2_HUMAN;sp|P04899-4|GNAI2_HUMAN	no	no	0	0	0	0	0			1							28.284	28.284	3	0.025269	5767	20190821_JH_WT_Ubi	56.295	8.5895	5878500	0	0	5878500	0	0	0	0	0	0			1078	478;415	955	3015	3169	3169				1
EKDPEIFCDPFTSATTTTNK	GlyGly (K)	2415.09	0.090020159	831	sp|P42566-2|EPS15_HUMAN;sp|P42566|EPS15_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			39.14	39.14	3	4.3153E-49	9317	20190821_JH_MUT_Ubi	201.22	137.19	157740000	26761000	26846000	0	15730000	20360000	45004000	23036000	0	0			1079	831	956	3016;3017;3018;3019;3020;3021	3170;3171;3172;3173;3174;3175	3173		798		6
EKECGVTATFDASR	GlyGly (K)	1683.7522	0.75224809	892	sp|P49757-8|NUMB_HUMAN;sp|P49757-7|NUMB_HUMAN;sp|P49757-6|NUMB_HUMAN;sp|P49757-5|NUMB_HUMAN;sp|P49757-4|NUMB_HUMAN;sp|P49757-2|NUMB_HUMAN;sp|P49757-3|NUMB_HUMAN;sp|P49757|NUMB_HUMAN	yes	no	0	0	1	0	1	1	1			1		1			25.916	25.916	3	0.00016507	5618	20190902_JH_MUT_Ubi_3	115.12	84.552	6196800	1385300	1865600	0	0	945200	0	2000700	0	0			1080	892	957	3022;3023;3024;3025	3176;3177;3178;3179	3179		862		4
EKEEFAVPENSSVQQFK	GlyGly (K)	2109.0015	0.0014631481	2175;2126	sp|Q9UHD9|UBQL2_HUMAN;sp|Q9UMX0-4|UBQL1_HUMAN;sp|Q9UMX0-2|UBQL1_HUMAN;sp|Q9UMX0|UBQL1_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	32.622	32.622	3	6.141E-14	8925	20190902_JH_WT_Ubi_3	153.2	88.797	88638000	6733400	6417900	14835000	3148700	6436500	8356400	5684300	19676000	17350000			1081	2126;2175	958	3026;3027;3028;3029;3030;3031;3032;3033;3034	3180;3181;3182;3183;3184;3185;3186;3187;3188	3188		1996		9
EKGAPPPGEPGLSHSGSEQPEQTGLLMGGASGGAR	Oxidation (M);GlyGly (K)	3472.6277	0.62772287	911	sp|P50895|BCAM_HUMAN	yes	yes	0	0	1	1	1	1			1		1	1			29.237	29.237	4	1.7213E-05	6999	20190902_JH_MUT_Ubi_2	70.15	35.675	27864000	9083100	0	0	8585900	0	6328300	3866400	0	0			1082	911	959	3035;3036;3037;3038	3189;3190;3191;3192	3191		875	572	4
EKIQDLLVDSGK	GlyGly (K)	1457.7726	0.77257283	117	sp|O00220|TR10A_HUMAN	yes	yes	0	0	1	0	1	1				1					34.005	34.005	3	0.0057521	8123	20190902_JH_EV_Ubi_3	95.094	14.405	1575100	1575100	0	0	0	0	0	0	0	0			1083	117	960	3039;3040	3193;3194	3194		104		2
EKIQQDADSVITVGR	GlyGly (K)	1771.9064	0.90644055	1946	sp|Q9H3P7|GCP60_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	30.321	30.321	3	1.6156E-37	8525	20190902_JH_WT_Ubi_2	204.17	140.44	72870000	3898000	5587400	13956000	5060000	4206700	5430500	10091000	15109000	9530800			1084	1946	961	3041;3042;3043;3044;3045;3046;3047;3048;3049	3195;3196;3197;3198;3199;3200;3201;3202;3203	3202		1881		9
EKLCYVALDFEQEMATAASSSSLEK	Oxidation (M);GlyGly (K)	2936.342	0.3419541	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	0	1	1	1	1	1	1	1		1	1	1	1	41.954	41.954	3	5.4181E-34	12103	20190902_JH_WT_Ubi_3	165.34	133.58	31445000	2384000	4059700	7111500	760500	0	3836800	4072100	4065000	5155100			1085	1000;1087;1490	962	3050;3051;3052;3053;3054;3055;3056;3057	3204;3205;3206;3207;3208;3209;3210;3211;3212	3212		983	618	9
EKLCYVALDFEQEMATAASSSSLEK	GlyGly (K)	2920.347	0.34703948	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	0	1	0	1		1	1				1			49.448	49.448	3	1.0035E-15	13775	20190821_JH_WT_Ubi	131.97	97.753	14208000	0	4741400	8657000	0	0	0	809410	0	0			1086	1000;1087;1490	962	3058;3059;3060	3213;3214;3215	3215		983		3
EKLDDNQLNLIQK	GlyGly (K);3 Deamidation (NQ)	1686.8312	0.83120992	76	sp|A2VCL2|CC162_HUMAN	yes	yes	0	3	1	0	1	1								1	26.706	26.706	3	4.9778E-07	5246	20190821_JH_EV_Ubi	146.16	54.202	8070000	3620000	0	0	0	0	0	0	0	4449900			1087	76	963	3061;3062	3216;3217	3216	26;27;737	72		1
EKLGCQDAFPEVYDK	GlyGly (K)	1911.8673	0.86727785	1345	sp|Q15392-2|DHC24_HUMAN;sp|Q15392|DHC24_HUMAN	yes	no	0	0	1	0	1	1			1		1	1			32.746	32.746	3	0.0004507	7843	20190902_JH_MUT_Ubi_3	106.32	60.993	8458100	2248800	0	0	1906100	0	2186800	2116400	0	0			1088	1345	964	3063;3064;3065;3066	3218;3219;3220;3221	3221		1398		4
EKMLAAKSADGSAPAGEGEGVTLQR	Oxidation (M);2 GlyGly (K)	2716.3086	0.30862056	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	0	2	1	2	1	1	1	1	2	1	1	1	1	25.928	25.928	3;4	4.5616E-43	5615	20190902_JH_EV_Ubi_3	172.37	134.11	397120000	33578000	20800000	34205000	74013000	82061000	29506000	16489000	94319000	12148000			1089	1133	965	3067;3068;3069;3070;3071;3072;3073;3074;3075;3076	3222;3223;3224;3225;3226;3227;3228;3229;3230;3231;3232	3224		1129;1130	706	11
EKMLAAKSADGSAPAGEGEGVTLQR	2 GlyGly (K)	2700.3137	0.31370594	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	0	2	0	2	2	2	1	1	1	1	1	1	1	27.792	27.792	3;4	2.8349E-25	5146	20190821_JH_MUT_Ubi	157.53	109.78	204780000	34425000	14046000	21754000	15287000	23324000	12400000	15649000	34422000	33471000			1090	1133	965	3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087	3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243	3237		1129;1130		11
EKMLAAKSADGSAPAGEGEGVTLQR	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	2717.2926	0.29263615	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	1	2	1	2								1	1	26.481	26.481	4	0.0070365	7179	20190902_JH_WT_Ubi_2	49.106	16.863	14167000	0	0	0	0	0	0	0	7336100	6831200			1091	1133	965	3088;3089	3244;3245	3244	988	1129;1130	706	2
EKMNAKWDTGENPIYK	Oxidation (M);2 GlyGly (K)	2167.0004	0.0004172906	429	sp|P05556|ITB1_HUMAN	yes	yes	0	0	2	1	2				1	1					25.992	25.992	3;4	0.007973	5665	20190902_JH_EV_Ubi_3	68.033	46.8	4447100	0	0	0	1603300	2843800	0	0	0	0			1092	429	966	3090;3091	3246;3247	3247		412;413;414	218	2
EKPPFFSAKNVDPNPYPETSAGFLSR	GlyGly (K)	3008.4668	0.46683576	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN;sp|O15438-5|MRP3_HUMAN;sp|O15438-3|MRP3_HUMAN	yes	no	0	0	1	0	2	1	1								39.994	39.994	4	0.0076353	9482	20190821_JH_MUT_Ubi	48.913	30.137	5484600	2233100	3251500	0	0	0	0	0	0	0			1093	186	967	3092;3093	3248;3249	3249		161;162		2
EKPYFPIPEEYTFIQNVPLEDR	GlyGly (K)	2837.3912	0.3912112	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	1	0	1		1				1	1			49.57	49.57	3	7.0413E-16	14206	20190902_JH_MUT_Ubi_2	140.63	101.34	7719800	0	3671100	0	0	0	2543900	1504900	0	0			1094	1128	968	3094;3095;3096	3250;3251;3252;3253;3254	3251		1116		5
EKQAALEEEQAR	GlyGly (K)	1514.7325	0.73249893	1245	sp|Q13492-4|PICAL_HUMAN;sp|Q13492-3|PICAL_HUMAN;sp|Q13492-2|PICAL_HUMAN;sp|Q13492-5|PICAL_HUMAN;sp|Q13492|PICAL_HUMAN	yes	no	0	0	1	0	1	1	1	1							19.46	19.46	3	0.0022599	3300	20190821_JH_EV_Ubi	105.66	47.774	4686400	1349300	1246600	2090500	0	0	0	0	0	0			1095	1245	969	3097;3098;3099	3255;3256;3257	3255		1314		3
EKQAAYNADSGLK	GlyGly (K)	1507.7267	0.72668527	2173	sp|Q9UMD9-2|COHA1_HUMAN;sp|Q9UMD9|COHA1_HUMAN	yes	no	0	0	1	0	1			1					1	1	20.532	20.532	3	0.0027456	5216	20190902_JH_WT_Ubi_2	97.463	56.736	27243000	0	0	5598300	0	0	0	0	13159000	8486200			1096	2173	970	3100;3101;3102	3258;3259;3260	3259		2027		3
EKVNVDIINFGEEEVNTEK	GlyGly (K)	2319.123	0.12303485	971;73	sp|A2A3N6|PIPSL_HUMAN;sp|P55036|PSMD4_HUMAN;sp|P55036-2|PSMD4_HUMAN	no	no	0	0	1	0	1	1	1			1	1	1			40.219	40.219	3	1.6921E-10	10326	20190902_JH_MUT_Ubi_3	134.93	76.218	8994900	2207300	2551300	0	0	952480	1753700	1530200	0	0			1097	73;971	971	3103;3104;3105;3106;3107	3261;3262;3263;3264;3265	3265		71		5
EKVSASSENFHVGENDENQDR	GlyGly (K)	2504.08	0.080000833	2176	sp|Q9UN76|S6A14_HUMAN	yes	yes	0	0	1	0	1							1	2		24.116	24.116	3;4	0.00030802	6413	20190902_JH_WT_Ubi_2	80.733	64.687	7175400	0	0	0	0	0	0	850730	6324600	0			1098	2176	972	3108;3109;3110	3266;3267;3268	3268		2031		3
EKVSGQVGSR	GlyGly (K)	1159.5945	0.59454889	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1	1									12.414	12.414	3	0.015783	2233	20190821_JH_EV_Ubi	82.171	11.252	1020400	1020400	0	0	0	0	0	0	0	0			1099	1570	973	3111	3269	3269		1556		1
ELADKYGIPYFETSAATGQNVEK	GlyGly (K)	2644.2657	0.26567634	114	sp|O00194|RB27B_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			40.362	40.362	3	2.3284E-06	10435	20190821_JH_EV_Ubi	96.633	60.426	10989000	2266100	1608900	0	914090	1801300	2406100	1993000	0	0			1100	114	974	3112;3113;3114;3115;3116;3117	3270;3271;3272;3273;3274;3275	3270		101		6
ELAEDGYSGVEVR	Unmodified	1422.6627	0.66268803	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	0	0	0					1					32.115	32.115	2	0.024985	7637	20190902_JH_EV_Ubi_3	65.842	38.513	2226900	0	0	0	0	2226900	0	0	0	0			1101	662	975	3118	3276	3276				1
ELAEQTLNNIK	Unmodified	1271.6721	0.67213051	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN;sp|Q92499-2|DDX1_HUMAN	yes	no	0	0	0	0	0									1	31.641	31.641	2	0.028895	8647	20190902_JH_WT_Ubi_3	63.426	11.148	1259300	0	0	0	0	0	0	0	0	1259300			1102	1708	976	3119	3277	3277				0
ELAQATGLTPTQVGNWFKNRR	GlyGly (K)	2500.2935	0.29350326	338	sp|O95475|SIX6_HUMAN;sp|O95343|SIX3_HUMAN	yes	no	0	0	1	0	2						1				20.747	20.747	5	0.02384	4541	20190902_JH_MUT_Ubi_2	41.348	9.9896	4461300	0	0	0	0	0	4461300	0	0	0			1103	338	977	3120	3278	3278		312		1
ELASQPDVDGFLVGGASLKPEFVDIINAK	Unmodified	3028.5757	0.57571751	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	0	0	1	1	1			1	1		1	1	52.932	52.932	3	5.7203E-07	15289	20190902_JH_WT_Ubi_3	96.723	79.647	94902000	18055000	10521000	0	0	2384200	3418400	0	27134000	33389000			1104	997	978	3121;3122;3123;3124;3125;3126	3279;3280;3281;3282;3283;3284	3284				6
ELASQPDVDGFLVGGASLKPEFVDIINAK	GlyGly (K)	3142.6186	0.61864496	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	1	0	1							1			52.902	52.902	3	0.0022587	13586	20190902_JH_MUT_Ubi_3	61.415	36.956	0	0	0	0	0	0	0	0	0	0			1105	997	978	3127	3285	3285		976		1
ELCHQWLQPK	GlyGly (K);Deamidation (NQ)	1452.682	0.68198369	1779	sp|Q96GC6-3|ZN274_HUMAN;sp|Q96GC6-2|ZN274_HUMAN;sp|Q96GC6|ZN274_HUMAN	yes	no	0	1	1	0	0			1							43.077	43.077	3	0.030748	11194	20190821_JH_WT_Ubi	64.841	13.078	2304000	0	0	2304000	0	0	0	0	0	0			1106	1779	979	3128	3286	3286	1185			0
ELDQWIEQLNECKQLSESQVK	GlyGly (K)	2717.2967	0.29665889	1089	sp|P67775-2|PP2AA_HUMAN;sp|P67775|PP2AA_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	43.844	43.844	3	4.4281E-130	11563	20190821_JH_WT_Ubi	266.39	214.21	126520000	19880000	20981000	30264000	3312200	5138400	9183000	18519000	8299600	10942000			1107	1089	980	3129;3130;3131;3132;3133;3134;3135;3136;3137	3287;3288;3289;3290;3291;3292;3293;3294;3295;3296	3294		1081		10
ELDQWVEQLNECKQLNENQVR	GlyGly (K)	2785.309	0.30895491	1054	sp|P62714|PP2AB_HUMAN	yes	yes	0	0	1	0	1	1		1	1	1	1	1	1	1	41.088	41.088	3	2.4725E-111	10415	20190821_JH_WT_Ubi	251.56	176.9	85940000	10982000	0	36809000	3395900	2534200	8775200	5938500	8045600	9459200			1108	1054	981	3138;3139;3140;3141;3142;3143;3144;3145	3297;3298;3299;3300;3301;3302;3303;3304	3302		1029		8
ELDQWVEQLNECKQLNENQVR	GlyGly (K);Deamidation (NQ)	2786.293	0.2929705	1054	sp|P62714|PP2AB_HUMAN	yes	yes	0	1	1	0	1						1				41.859	41.859	3	4.1121E-07	11886	20190902_JH_MUT_Ubi_2	117.37	75.249	1517000	0	0	0	0	0	1517000	0	0	0			1109	1054	981	3146	3305	3305	338	1029		1
ELEEIVQPIISK	Unmodified	1396.7813	0.7813466	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0	1			1	1					42.229	42.229	2	2.0206E-12	10633	20190902_JH_EV_Ubi_2	169.82	108.23	11694000	5291200	0	0	2720000	3682500	0	0	0	0			1110	517	982	3147;3148;3149	3306;3307;3308	3307				3
ELEFDQAWISQQIK	GlyGly (K);2 Deamidation (NQ)	1849.8734	0.87340909	2096	sp|Q9P2P6|STAR9_HUMAN	yes	yes	0	2	1	0	0							1			32.693	32.693	3	0.034602	7905	20190902_JH_MUT_Ubi_3	47.915	7.4183	1755200	0	0	0	0	0	0	1755200	0	0			1111	2096	983	3150	3309	3309	1295;1296			0
ELEKVCNPIITK	GlyGly (K)	1556.8232	0.82322819	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	0	1	0	1					1					29.405	29.405	3	0.029607	6745	20190902_JH_EV_Ubi_3	62.528	34.561	5337100	0	0	0	0	5337100	0	0	0	0			1112	519	984	3151	3310	3310		512;514		1
ELELMFGCQVEGDAAETPPRPR	Oxidation (M)	2517.1628	0.16280795	1141	sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN	yes	no	0	0	0	1	1								1		38.847	38.847	3	0.0009905	11452	20190902_JH_WT_Ubi_2	78.501	43.009	1898400	0	0	0	0	0	0	0	1898400	0			1113	1141	985	3152	3311	3311			710	1
ELEQTLQASEEQLQQSK	GlyGly (K);3 Deamidation (NQ)	2104.9648	0.96480287	1724	sp|Q92805|GOGA1_HUMAN	yes	yes	0	3	1	0	0						1				31.398	31.398	3	0.026966	7851	20190902_JH_MUT_Ubi_2	43.592	6.4156	854210	0	0	0	0	0	854210	0	0	0			1114	1724	986	3153	3312	3312	1176;1177;1178	1717		1
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	Unmodified	3054.4869	0.48691928	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	0	0	0			1							49.363	49.363	3	1.2678E-73	13743	20190821_JH_WT_Ubi	201.29	164.42	8450800	0	0	8450800	0	0	0	0	0	0			1115	503	987	3154	3313;3314	3314				2
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD	GlyGly (K)	4354.0448	0.044807886	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	1	0	1		2	1			1	1	2	1	50.936	50.936	3;4	8.4463E-15	13542	20190821_JH_MUT_Ubi	93.805	78.945	162510000	0	27372000	39439000	0	0	15700000	17683000	33300000	29016000			1116	503	988	3155;3156;3157;3158;3159;3160;3161;3162	3315;3316;3317;3318;3319;3320;3321;3322;3323;3324	3316		487		10
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD	GlyGly (K);Deamidation (NQ)	4355.0288	0.028823471	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	1	1	0	1						1	1			51.168	51.168	3	1.0201E-09	14543	20190902_JH_MUT_Ubi_2	80.543	52.68	1758400	0	0	0	0	0	912050	846350	0	0			1117	503	988	3163;3164	3325;3326	3325	849	487		2
ELEVLSEQYSQK	Unmodified	1451.7144	0.71438925	1498	sp|Q6WCQ1-3|MPRIP_HUMAN;sp|Q6WCQ1|MPRIP_HUMAN;sp|Q6WCQ1-2|MPRIP_HUMAN	yes	no	0	0	0	0	0			1							34.448	34.448	2	1.7237E-05	7803	20190821_JH_WT_Ubi	129.16	3.4157	2467600	0	0	2467600	0	0	0	0	0	0			1118	1498	989	3165	3327	3327				0
ELFQYMLQKER	Oxidation (M);Deamidation (NQ)	1500.7283	0.72826518	1435	sp|Q5SQI0-7|ATAT_HUMAN;sp|Q5SQI0-6|ATAT_HUMAN;sp|Q5SQI0-5|ATAT_HUMAN;sp|Q5SQI0-4|ATAT_HUMAN;sp|Q5SQI0-3|ATAT_HUMAN;sp|Q5SQI0-2|ATAT_HUMAN;sp|Q5SQI0|ATAT_HUMAN	yes	no	0	1	0	1	1		1				1	1			12.82	12.82	3	0.0011924	2339	20190821_JH_MUT_Ubi	115.91	20.432	4099900	0	904070	0	0	0	1268400	1927400	0	0			1119	1435	990	3166;3167;3168	3328;3329;3330	3328	1070		881	3
ELFSPLHALNFGIGGDGTQHVLWR	Unmodified	2663.3609	0.36085455	1328	sp|Q15102|PA1B3_HUMAN	yes	yes	0	0	0	0	0		1	1					1		49.456	49.456	4	0.0047225	13062	20190821_JH_MUT_Ubi	52.432	25.805	28380000	0	4657100	13056000	0	0	0	0	10667000	0			1120	1328	991	3169;3170;3171	3331;3332;3333	3331				3
ELFSPLHALNFGIGGDTTR	Unmodified	2044.0378	0.037789075	1100	sp|P68402|PA1B2_HUMAN;sp|P68402-3|PA1B2_HUMAN;sp|P68402-2|PA1B2_HUMAN;sp|P68402-4|PA1B2_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	48.233	48.233	3	1.3453E-39	13304	20190821_JH_WT_Ubi	191.36	146.67	61567000	3225900	6553800	26534000	0	0	5844100	0	8007600	11402000			1121	1100	992	3172;3173;3174;3175;3176;3177;3178	3334;3335;3336;3337;3338;3339;3340;3341	3338				8
ELGEYALAEYTEVK	Unmodified	1613.7825	0.78246882	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0								1	1	42.291	42.291	3	0.0028548	12710	20190902_JH_WT_Ubi_2	84.734	40.223	2586300	0	0	0	0	0	0	0	1436500	1149800			1122	865	993	3179;3180	3342;3343	3342				2
ELGHDLHSISIPTKLLGCASK	2 GlyGly (K)	2503.2853	0.28530634	1448	sp|Q5VT06|CE350_HUMAN	yes	yes	0	0	2	0	1				1						37.936	37.936	3	0.02891	9386	20190902_JH_EV_Ubi_2	57.338	28.027	4951700	0	0	0	4951700	0	0	0	0	0			1123	1448	994	3181	3344	3344		1465;1466		1
ELGITALHIK	Unmodified	1093.6495	0.64954457	1044	sp|P62263|RS14_HUMAN	yes	yes	0	0	0	0	0			1							34.681	34.681	3	0.036969	7880	20190821_JH_WT_Ubi	53.756	26.453	18344000	0	0	18344000	0	0	0	0	0	0			1124	1044	995	3182	3345	3345				1
ELGLEKEDAALLPR	GlyGly (K)	1666.889	0.88899957	79	sp|A4D1S0-2|KLRG2_HUMAN;sp|A4D1S0|KLRG2_HUMAN	yes	no	0	0	1	0	1	1			1						36.946	36.946	3	6.6198E-37	9102	20190902_JH_EV_Ubi_2	202.29	104.83	7271000	0	0	0	7271000	0	0	0	0	0			1125	79	996	3183;3184	3346;3347	3347		73		2
ELHINLIPNK	Unmodified	1189.6819	0.68190733	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	yes	no	0	0	0	0	0		1	1		1	1	2	1	1	30.393	30.393	3	0.00076729	8918	20190902_JH_MUT_Ubi_2	128.86	67.947	428810000	0	26690000	104250000	0	563390	49358000	47422000	98231000	102300000			1126	455	997	3185;3186;3187;3188;3189;3190;3191;3192	3348;3349;3350;3351;3352;3353;3354;3355	3350				8
ELHLSFTQGFWR	Unmodified	1519.7572	0.75719754	1749	sp|Q969N2-6|PIGT_HUMAN;sp|Q969N2-5|PIGT_HUMAN;sp|Q969N2|PIGT_HUMAN	yes	no	0	0	0	0	0		1								44.246	44.246	3	0.0010848	11180	20190821_JH_MUT_Ubi	109.16	71.188	421230	0	421230	0	0	0	0	0	0	0			1127	1749	998	3193	3356	3356				1
ELHNTPYGTASEPSEKAK	GlyGly (K)	2071.9811	0.98106206	2062	sp|Q9NXV2|KCTD5_HUMAN	yes	yes	0	0	1	0	1		1				1	1			20.791	20.791	3	8.0651E-15	4394	20190902_JH_MUT_Ubi_3	153.41	114.52	4026800	0	714290	0	0	0	1750900	1561600	0	0			1128	2062	999	3194;3195;3196	3357;3358;3359	3359		1945		3
ELICHNQFSLFLVGSGGFGGK	Unmodified	2266.1205	0.12047285	923	sp|P51659-3|DHB4_HUMAN;sp|P51659|DHB4_HUMAN;sp|P51659-2|DHB4_HUMAN	yes	no	0	0	0	0	0			1							47.673	47.673	3	0.00092526	13085	20190821_JH_WT_Ubi	72.359	24.72	2227200	0	0	2227200	0	0	0	0	0	0			1129	923	1000	3197	3360	3360				1
ELIMIAGGNQSILLWIKK	Deamidation (NQ)	2027.1489	0.14891943	2142	sp|Q9UII4|HERC5_HUMAN	yes	yes	0	1	0	0	1									1	52.755	52.755	2	0.029473	15285	20190902_JH_WT_Ubi_3	51.875	20.485	0	0	0	0	0	0	0	0	0	0			1130	2142	1001	3198	3361	3361	681;1303			1
ELIQKELTIGSK	GlyGly (K)	1471.8246	0.8246084	434	sp|P06703|S10A6_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1			1	31.472	31.472	3	0.0038773	7330	20190902_JH_EV_Ubi_3	98.407	50.436	63605000	5498700	7091800	15050000	3774200	4212200	11973000	0	0	16006000			1131	434	1002	3199;3200;3201;3202;3203;3204;3205	3362;3363;3364;3365;3366;3367;3368	3364		425;426		7
ELKPMASGASSA	Oxidation (M);GlyGly (K)	1277.5922	0.59216562	1701	sp|Q8WWI5|CTL1_HUMAN	yes	yes	0	0	1	1	1					1					20.882	20.882	2	7.5813E-47	4373	20190902_JH_EV_Ubi_3	218.94	155.38	32027000	0	0	0	0	32027000	0	0	0	0			1132	1701	1003	3206	3369	3369		1695	972	1
ELLEEMEILK	Unmodified	1245.6526	0.65264062	2245	sp|Q9Y5S2|MRCKB_HUMAN	yes	yes	0	0	0	0	0		1	1							30.229	30.229	3	0.013595	6333	20190821_JH_WT_Ubi	75.652	0.46294	46605000	0	21412000	25192000	0	0	0	0	0	0			1133	2245	1004	3207;3208	3370;3371	3371				2
ELLELEALSMAVESTGTAK	Unmodified	1991.0133	0.013273388	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	0	0			1							53.875	53.875	3	0.0029547	15373	20190821_JH_WT_Ubi	93.342	49.652	0	0	0	0	0	0	0	0	0	0			1134	1306	1005	3209	3372	3372				1
ELLLPNWQGSGSHGLTIAQR	Unmodified	2176.1389	0.1389001	1190	sp|Q09666|AHNK_HUMAN;sp|Q09666-2|AHNK_HUMAN	yes	no	0	0	0	0	0	1	1	1	1		1	1			42.051	42.051	3	0.001078	10839	20190821_JH_WT_Ubi	73.464	26.427	85686000	10573000	16895000	23033000	2475300	0	19147000	13562000	0	0			1135	1190	1006	3210;3211;3212;3213;3214;3215	3373;3374;3375;3376;3377;3378;3379	3379				7
ELLTEFGYK	Unmodified	1098.5597	0.55972651	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	0			1							39.387	39.387	2	2.0293E-06	9665	20190821_JH_WT_Ubi	155	98.874	13285000	0	0	13285000	0	0	0	0	0	0			1136	883	1007	3216	3380	3380				1
ELNEYKSNEMEVHASSKHLTR	GlyGly (K);Deamidation (NQ)	2616.2238	0.2238283	1797	sp|Q96KR7-3|PHAR3_HUMAN;sp|Q96KR7-2|PHAR3_HUMAN;sp|Q96KR7-4|PHAR3_HUMAN;sp|Q96KR7|PHAR3_HUMAN	yes	no	0	1	1	0	2			1							19.297	19.297	2	0.034052	3531	20190821_JH_WT_Ubi	46.318	18.982	0	0	0	0	0	0	0	0	0	0			1137	1797	1008	3217	3381	3381	575			1
ELNLSFCEIK	Unmodified	1251.6169	0.61692381	851	sp|P46060|RAGP1_HUMAN	yes	yes	0	0	0	0	0								1		21.564	21.564	3	0.030406	5493	20190902_JH_WT_Ubi_2	58.592	8.1192	42954000	0	0	0	0	0	0	0	42954000	0			1138	851	1009	3218	3382	3382				1
ELPGAKANDDSTIPLTGAAGETLGTSEGTSAGSHPR	GlyGly (K)	3578.7085	0.70847561	1184	sp|Q08357|S20A2_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1			34.676	34.676	4	0.00016678	8389	20190902_JH_EV_Ubi_2	55.765	22.448	25365000	7240500	3485400	0	4320400	0	5124400	5194200	0	0			1139	1184	1010	3219;3220;3221;3222;3223	3383;3384;3385;3386;3387;3388	3384		1177		6
ELPKPFFR	GlyGly (K)	1146.6186	0.61857879	1282	sp|Q14160-3|SCRIB_HUMAN;sp|Q14160|SCRIB_HUMAN	yes	no	0	0	1	0	1								1		33.522	33.522	3	0.033869	9617	20190902_JH_WT_Ubi_2	72.789	36.408	1016900	0	0	0	0	0	0	0	1016900	0			1140	1282	1011	3224	3389	3389				1
ELPSFVGEK	Unmodified	1004.5179	0.51786169	712	sp|P29034|S10A2_HUMAN	yes	yes	0	0	0	0	0				1						34.203	34.203	1	0.035233	8284	20190902_JH_EV_Ubi_2	42.287	10.998	406770	0	0	0	406770	0	0	0	0	0			1141	712	1012	3225	3390	3390				0
ELPSFVGEKVDEEGLK	GlyGly (K)	1888.9418	0.941823	712	sp|P29034|S10A2_HUMAN	yes	yes	0	0	1	0	1		1				1	1			37.458	37.458	3	0.0082427	10125	20190902_JH_MUT_Ubi_2	69.345	37.73	19978000	0	6447000	0	0	0	6602200	6928700	0	0			1142	712	1013	3226;3227;3228	3391;3392;3393	3392		691		3
ELPTEPPYTAYVGNLPFNTVQGDIDAIFK	Unmodified	3208.5968	0.59684688	1323	sp|Q15056-2|IF4H_HUMAN;sp|Q15056|IF4H_HUMAN	yes	no	0	0	0	0	0								1		56.714	56.714	3	1.6265E-11	16617	20190902_JH_WT_Ubi_2	109.4	79.91	1489200	0	0	0	0	0	0	0	1489200	0			1143	1323	1014	3229	3394	3394				1
ELQELVQYPVEHPDK	Unmodified	1822.9101	0.91012895	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	0			1					1	1	35.213	35.213	3	0.0020532	8098	20190821_JH_WT_Ubi	84.892	44.125	18449000	0	0	6865500	0	0	0	0	6666400	4917500			1144	974	1015	3230;3231;3232	3395;3396;3397;3398	3395				4
ELQGLQNFPEK	GlyGly (K);2 Deamidation (NQ)	1417.6725	0.67252444	2103	sp|Q9UBK9|UXT_HUMAN;sp|Q9UBK9-2|UXT_HUMAN	yes	no	0	2	1	0	0		1								27.762	27.762	3	0.02047	5061	20190821_JH_MUT_Ubi	69.65	10.386	614870	0	614870	0	0	0	0	0	0	0			1145	2103	1016	3233	3399	3399	669;1298	1982		0
ELQHAALGGTATR	Unmodified	1323.6895	0.6895119	157	sp|O14828-2|SCAM3_HUMAN;sp|O14828|SCAM3_HUMAN	yes	no	0	0	0	0	0			1							21.74	21.74	3	0.012198	4034	20190821_JH_WT_Ubi	75.102	38.431	0	0	0	0	0	0	0	0	0	0			1146	157	1017	3234	3400	3400				1
ELQKANQEQYAEGK	GlyGly (K)	1748.8329	0.83294126	2109	sp|Q9UBU8|MO4L1_HUMAN;sp|Q9UBU8-2|MO4L1_HUMAN	yes	no	0	0	1	0	1	1	1	1				1	1	1	20.324	20.324	3	4.422E-06	5078	20190902_JH_WT_Ubi_3	133.88	93.96	31407000	0	1499800	8896900	0	0	0	3510300	8163400	9336500			1147	2109	1018	3235;3236;3237;3238;3239;3240	3401;3402;3403;3404;3405;3406	3406		1983		6
ELQKPDSFHSLTPTFAAVLVHIDNLR	Unmodified	2947.5556	0.55559119	347	sp|O95479|G6PE_HUMAN	yes	yes	0	0	0	0	1	1									47.481	47.481	4	0.00011007	12903	20190821_JH_EV_Ubi	79.455	60.342	5806000	5806000	0	0	0	0	0	0	0	0			1148	347	1019	3241	3407	3407				1
ELQSKEFLSAK	GlyGly (K)	1392.7249	0.72489436	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	1	0	1							1	2	1	27.424	27.424	2;3	0.0012929	7495	20190902_JH_WT_Ubi_2	133.81	88.44	1023300000	0	0	0	0	0	0	214360000	505120000	303850000			1149	1630	1021	3242;3243;3244;3245	3408;3409;3410;3411	3410		1630;1631		3
ELQSKEFLSAK	GlyGly (K);Deamidation (NQ)	1393.7089	0.70890994	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	1	1	0	1								1		28.956	28.956	3	0.013443	7960	20190902_JH_WT_Ubi_2	89.9	56.812	18325000	0	0	0	0	0	0	0	18325000	0			1150	1630	1021	3246	3412	3412	1146	1630;1631		0
ELQSKEFLSAKEETPGAGQK	2 GlyGly (K)	2404.187	0.18703209	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	0	2	0	2	1	1	1	1	1	1	1	1	1	27.967	27.967	3;4	1.5951E-47	5244	20190821_JH_MUT_Ubi	199.91	152.7	149960000	14235000	12235000	12793000	20903000	14155000	20380000	14725000	17751000	22788000			1151	1630	1022	3247;3248;3249;3250;3251;3252;3253;3254;3255	3413;3414;3415;3416;3417;3418;3419;3420;3421	3416		1629;1630;1631		9
ELQSKEFLSAKEETPGAGQK	2 GlyGly (K);Deamidation (NQ)	2405.171	0.17104767	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	1	2	0	2									1	28.34	28.34	3	0.004678	7499	20190902_JH_WT_Ubi_3	82.755	40.039	2091500	0	0	0	0	0	0	0	0	2091500			1152	1630	1022	3256	3422	3422	1145;1146	1629;1630;1631		1
ELSGQNLRALIK	GlyGly (K)	1454.8205	0.82052608	49		yes	no	0	0	1	0	1								1		39.765	39.765	3	0.019915	11732	20190902_JH_WT_Ubi_2	70.488	10.091	31239000	0	0	0	0	0	0	0	31239000	0	+		1153	49	1023	3257	3423	3423		53		1
ELSGTIKEILGTAQSVGCNVDGR	GlyGly (K)	2517.2493	0.24931477	726	sp|P30050-2|RL12_HUMAN;sp|P30050|RL12_HUMAN	yes	no	0	0	1	0	1		1								47.482	47.482	3	0.013308	12376	20190821_JH_MUT_Ubi	50.189	20.051	1000300	0	1000300	0	0	0	0	0	0	0			1154	726	1024	3258	3424	3424		707		1
ELSTTLNADEAVTR	Unmodified	1518.7526	0.75256567	767	sp|P34932|HSP74_HUMAN	yes	yes	0	0	0	0	0									1	32.896	32.896	2	0.01207	9069	20190902_JH_WT_Ubi_3	73.082	29.431	3416500	0	0	0	0	0	0	0	0	3416500			1155	767	1025	3259	3425	3425				1
ELTIGSKLQDAEIAR	GlyGly (K)	1756.9319	0.93192702	434	sp|P06703|S10A6_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	35.202	35.202	3	4.8814E-37	9251	20190902_JH_MUT_Ubi_2	198.48	143.29	329810000	11831000	39983000	59147000	9963300	9022000	62103000	64092000	41900000	31769000			1156	434	1026	3260;3261;3262;3263;3264;3265;3266;3267;3268	3426;3427;3428;3429;3430;3431;3432;3433;3434	3430		426		9
ELTKQYEK	GlyGly (K)	1151.5823	0.58225287	1052	sp|P62333|PRS10_HUMAN	yes	yes	0	0	1	0	1		1								17.554	17.554	2	0.027465	2644	20190821_JH_MUT_Ubi	122.18	35.343	739060	0	739060	0	0	0	0	0	0	0			1157	1052	1027	3269	3435	3435		1026		1
ELTSLVKEVYPEAR	GlyGly (K)	1746.9152	0.91521432	126	sp|O00422|SAP18_HUMAN	yes	yes	0	0	1	0	1	1				1		1			38.297	38.297	3	0.011399	9671	20190902_JH_MUT_Ubi_3	76.262	36.516	3708200	2196800	0	0	0	1511400	0	0	0	0			1158	126	1028	3270;3271;3272	3436;3437;3438	3438		115		3
ELVHIKPDQSNVR	GlyGly (K)	1647.8693	0.86926718	2183	sp|Q9UP95-5|S12A4_HUMAN;sp|Q9UP95-2|S12A4_HUMAN;sp|Q9UP95-6|S12A4_HUMAN;sp|Q9UP95|S12A4_HUMAN;sp|Q9UP95-7|S12A4_HUMAN	yes	no	0	0	1	0	1	1	1	1		1		1			24.325	24.325	3	9.2967E-06	4070	20190821_JH_MUT_Ubi	135.02	93.791	75307000	22287000	12458000	7364700	0	16319000	0	16878000	0	0			1159	2183	1029	3273;3274;3275;3276;3277	3439;3440;3441;3442;3443;3444;3445	3442		2042		7
ELVSDANQHVK	Unmodified	1238.6255	0.62551466	731	sp|P30153|2AAA_HUMAN	yes	yes	0	0	0	0	0					1					20.112	20.112	2	0.0048408	4178	20190902_JH_EV_Ubi_3	96.665	27.037	788110	0	0	0	0	788110	0	0	0	0			1160	731	1030	3278	3446	3446				0
ELYVMEISDNPGVHEPGEPEFK	Unmodified	2515.1577	0.15770579	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	0	0	0			1							42.282	42.282	3	0.0089361	10892	20190821_JH_WT_Ubi	51.942	22.813	2468400	0	0	2468400	0	0	0	0	0	0			1161	308	1031	3279	3447	3447				1
EMEAELEDER	Oxidation (M)	1265.5082	0.50816122	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	1	0			1							23.42	23.42	2	0.025218	4426	20190821_JH_WT_Ubi	66.962	32.776	1347800	0	0	1347800	0	0	0	0	0	0			1162	776	1032	3280	3448	3448			487	0
EMGGHHIVALCVLK	Oxidation (M)	1578.8011	0.80105296	380	sp|P00492|HPRT_HUMAN	yes	yes	0	0	0	1	0			1					1		29.02	29.02	4	0.0013568	7974	20190902_JH_WT_Ubi_2	95.401	27.675	15946000	0	0	6170000	0	0	0	0	9776400	0			1163	380	1033	3281;3282	3449;3450	3450			177	2
EMGLLSQNGHIPKELKK	Oxidation (M);2 GlyGly (K)	2165.1263	0.12628651	1662	sp|Q8NI77|KI18A_HUMAN	yes	yes	0	0	2	1	2		1								56.611	56.611	3	0.018747	15017	20190821_JH_MUT_Ubi	62.861	25.497	841230	0	841230	0	0	0	0	0	0	0			1164	1662	1034	3283	3451	3451		1659;1660	958	1
EMIKSGMNVAR	2 Oxidation (M);GlyGly (K)	1380.649	0.648969	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN	yes	no	0	0	1	2	1						1	1			17.001	17.001	3	0.019562	3676	20190902_JH_MUT_Ubi_3	61.765	20.684	1298000	0	0	0	0	0	868770	429270	0	0			1165	556	1035	3284;3285	3452;3453	3453		542	340;341	2
EMLKLLDFGSLSNLQVTQPTVGMNFK	Oxidation (M);GlyGly (K)	3039.5409	0.54092868	476	sp|P08708|RS17_HUMAN	yes	yes	0	0	1	1	1			1							51.809	51.809	3	0.00067955	14609	20190821_JH_WT_Ubi	70.679	43.405	3175400	0	0	3175400	0	0	0	0	0	0			1166	476	1036	3286	3454	3454		478	280	1
EMLSIPSGSGNKK	Oxidation (M)	1362.6813	0.68131498	1588	sp|Q8IYA8-3|IHO1_HUMAN;sp|Q8IYA8|IHO1_HUMAN	yes	no	0	0	0	1	1								1		22.752	22.752	3	0.031784	5894	20190902_JH_WT_Ubi_2	54.7	12.699	0	0	0	0	0	0	0	0	0	0			1167	1588	1037	3287	3455	3455			935	1
EMVTSKLPNSVLGK	Oxidation (M);GlyGly (K)	1631.8553	0.8552566	1936	sp|Q9H223|EHD4_HUMAN	yes	yes	0	0	1	1	1					1					30.401	30.401	3	0.015485	7080	20190902_JH_EV_Ubi_3	76.24	31.272	1627000	0	0	0	0	1627000	0	0	0	0			1168	1936	1038	3288	3456	3456		1874	1056	0
EMYTLGITNFPIPGEPGFPLNAIYAK	Oxidation (M)	2868.4408	0.44080393	176	sp|O15145|ARPC3_HUMAN	yes	yes	0	0	0	1	0								1		55.859	55.859	3	4.1554E-05	16480	20190902_JH_WT_Ubi_2	83.871	48.435	1152700	0	0	0	0	0	0	0	1152700	0			1169	176	1039	3289	3457	3457			76	1
ENDAHLVEVNLNNIK	Unmodified	1720.8744	0.87441214	2064	sp|Q9NYL9|TMOD3_HUMAN	yes	yes	0	0	0	0	0			1							35.707	35.707	3	0.023021	8263	20190821_JH_WT_Ubi	52.101	2.6527	2234300	0	0	2234300	0	0	0	0	0	0			1170	2064	1040	3290	3458	3458				1
ENEGGDNLCPCFYPYK	Unmodified	1961.7924	0.79239835	35		yes	no	0	0	0	0	0									1	43.125	43.125	3	0.0035093	12582	20190902_JH_WT_Ubi_3	73.887	40.482	2958100	0	0	0	0	0	0	0	0	2958100	+		1171	35	1041	3291	3459	3459				1
ENHFLIFVK	Unmodified	1145.6233	0.62332982	1189	sp|Q08AF3-2|SLFN5_HUMAN;sp|Q08AF3|SLFN5_HUMAN	yes	no	0	0	0	0	0			1							37.818	37.818	3	0.0068919	9072	20190821_JH_WT_Ubi	94.309	41.907	2218100	0	0	2218100	0	0	0	0	0	0			1172	1189	1042	3292	3460	3460				1
ENIFAIQTLKDFQYIDR	GlyGly (K)	2227.1273	0.12733236	332	sp|O95208-3|EPN2_HUMAN;sp|O95208-2|EPN2_HUMAN;sp|O95208|EPN2_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1		48.3	48.3	3	6.3227E-08	12710	20190821_JH_MUT_Ubi	130.02	83.09	15553000	1145700	4077200	4939100	0	0	1362200	1874300	2154800	0			1173	332	1043	3293;3294;3295;3296;3297;3298	3461;3462;3463;3464;3465;3466	3462		308		6
ENKTAVVVGTITDDVR	GlyGly (K)	1829.9483	0.94830537	1171	sp|Q07020-2|RL18_HUMAN;sp|Q07020|RL18_HUMAN	yes	no	0	0	1	0	1	1	1								34.851	34.851	3	0.0011165	7717	20190821_JH_MUT_Ubi	91.932	53.352	2909600	1513400	1396200	0	0	0	0	0	0	0			1174	1171	1044	3299;3300	3467;3468	3468		1163		2
ENLGVKQNIKK	GlyGly (K);2 Deamidation (NQ)	1385.7514	0.75144346	1800	sp|Q96M86|DNHD1_HUMAN	yes	yes	0	2	1	0	2				1						49.515	49.515	3	0.01987	12067	20190902_JH_EV_Ubi_2	86.882	7.3925	2573000	0	0	0	2573000	0	0	0	0	0			1175	1800	1045	3301	3469	3469	576;1191	1762		1
ENLKAAQEEYVK	GlyGly (K)	1534.7627	0.76273643	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	24.641	24.641	3	0.00023432	5258	20190902_JH_EV_Ubi_3	126.66	84.563	65791000	3357700	3014800	14173000	0	3298900	5424000	4915600	14738000	16868000			1176	400	1046	3302;3303;3304;3305;3306;3307;3308;3309	3470;3471;3472;3473;3474;3475;3476;3477	3471		367		8
ENMYAVQTLKDFQYVDR	Oxidation (M);GlyGly (K)	2249.0423	0.042282105	2260	sp|Q9Y6I3-3|EPN1_HUMAN;sp|Q9Y6I3|EPN1_HUMAN;sp|Q9Y6I3-1|EPN1_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	2	1	1	1	39.182	39.182	3	4.658E-42	11652	20190902_JH_WT_Ubi_2	202.01	147.06	394610000	32684000	39384000	58083000	16325000	26287000	75806000	49760000	50928000	45355000			1177	2260	1047	3310;3311;3312;3313;3314;3315;3316;3317;3318;3319	3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490	3488		2094	1162	13
ENMYAVQTLKDFQYVDR	GlyGly (K)	2233.0474	0.047367483	2260	sp|Q9Y6I3-3|EPN1_HUMAN;sp|Q9Y6I3|EPN1_HUMAN;sp|Q9Y6I3-1|EPN1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	41.46	41.46	3	1.5791E-14	11671	20190902_JH_MUT_Ubi_2	157.58	125.9	177010000	13132000	34076000	44663000	3718000	0	30702000	14742000	18232000	17748000			1178	2260	1047	3320;3321;3322;3323;3324;3325;3326;3327	3491;3492;3493;3494;3495;3496;3497;3498	3494		2094		8
ENQTWNLQRK	Deamidation (NQ)	1316.6473	0.64731274	2060	sp|Q9NXL6|SIDT1_HUMAN;sp|Q9NXL6-2|SIDT1_HUMAN	yes	no	0	1	0	0	1								1		25.031	25.031	2	0.034542	6661	20190902_JH_WT_Ubi_2	53.493	9.6857	0	0	0	0	0	0	0	0	0	0			1179	2060	1048	3328	3499	3499	654			1
ENTKEQAVIPLTDSEYK	GlyGly (K)	2078.0168	0.016778861	1469	sp|Q6GQQ9-2|OTU7B_HUMAN;sp|Q6GQQ9|OTU7B_HUMAN	yes	no	0	0	1	0	1							1			31.892	31.892	3	0.0030319	7652	20190902_JH_MUT_Ubi_3	74.966	8.7202	1209300	0	0	0	0	0	0	1209300	0	0			1180	1469	1049	3329	3500	3500		1480		1
ENVLITGGGR	Unmodified	1014.5458	0.54580778	306	sp|O75911|DHRS3_HUMAN;sp|O75911-2|DHRS3_HUMAN	yes	no	0	0	0	0	0									1	27.769	27.769	2	0.013625	7339	20190902_JH_WT_Ubi_3	109.83	61.87	1738100	0	0	0	0	0	0	0	0	1738100			1181	306	1050	3330	3501	3501				0
ENYLTAGLTVGQVRPLVPLQPVTQNR	Unmodified	2862.5716	0.57157561	1853	sp|Q99959-2|PKP2_HUMAN;sp|Q99959|PKP2_HUMAN	yes	no	0	0	0	0	1	1	1				1	1			47.172	47.172	3	1.0581E-15	12437	20190902_JH_MUT_Ubi_3	133.94	99.252	6158700	1297900	2256500	0	0	0	1520800	1083500	0	0			1182	1853	1051	3331;3332;3333;3334	3502;3503;3504;3505;3506;3507	3506				6
ENYLTAGLTVGQVRPLVPLQPVTQNR	Deamidation (NQ)	2863.5556	0.55559119	1853	sp|Q99959-2|PKP2_HUMAN;sp|Q99959|PKP2_HUMAN	yes	no	0	1	0	0	1					1					46.86	46.86	3	0.0016836	11767	20190902_JH_EV_Ubi_3	98.76	78.56	0	0	0	0	0	0	0	0	0	0			1183	1853	1051	3335	3508	3508	593;1211			1
EPAIHSEGQWVTLPAPLDTINVHLR	Unmodified	2792.461	0.46096252	505	sp|P10253|LYAG_HUMAN	yes	yes	0	0	0	0	0			1							46.214	46.214	4	0.024856	12492	20190821_JH_WT_Ubi	35.17	8.0412	7013400	0	0	7013400	0	0	0	0	0	0			1184	505	1052	3336	3509	3509				1
EPAITSQNSPEAR	Unmodified	1398.6739	0.67392142	657	sp|P23193-2|TCEA1_HUMAN;sp|P23193|TCEA1_HUMAN	yes	no	0	0	0	0	0									1	27.123	27.123	2	0.0015588	7099	20190902_JH_WT_Ubi_3	106.2	37.353	5287100	0	0	0	0	0	0	0	0	5287100			1185	657	1053	3337	3510	3510				1
EPEDEEEEEEEEEEDEDEDLEELEVLER	Unmodified	3492.3595	0.35949328	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN;sp|Q9NQC3-4|RTN4_HUMAN	yes	no	0	0	0	0	0								1		50.698	50.698	3	6.5973E-21	15162	20190902_JH_WT_Ubi_2	128.33	112.37	2409100	0	0	0	0	0	0	0	2409100	0			1186	2005	1054	3338	3511	3511				1
EPLGNVLFSPICLSTSLSLAQVGAK	Unmodified	2600.3884	0.38837443	790	sp|P36952|SPB5_HUMAN;sp|P36952-2|SPB5_HUMAN	yes	no	0	0	0	0	0			1							55.512	55.512	3	0.02766	15941	20190821_JH_WT_Ubi	36.362	13.426	5496300	0	0	5496300	0	0	0	0	0	0			1187	790	1055	3339	3512	3512				1
EPNLTYEPQLPYVEKQASR	GlyGly (K)	2375.1757	0.17573912	1174	sp|Q07157-2|ZO1_HUMAN;sp|Q07157|ZO1_HUMAN	yes	no	0	0	1	0	1						1				37.811	37.811	3	0.032126	10277	20190902_JH_MUT_Ubi_2	45.82	15.16	1460200	0	0	0	0	0	1460200	0	0	0			1188	1174	1056	3340	3513	3513				1
EPPLSLTIHLTSPVVR	Unmodified	1758.004	0.003969751	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-5|ILF3_HUMAN;sp|Q12906-2|ILF3_HUMAN;sp|Q12906-3|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN;sp|Q12906-4|ILF3_HUMAN;sp|Q12906-6|ILF3_HUMAN	no	no	0	0	0	0	0			1			1			1	42.511	42.511	3	0.02561	11094	20190821_JH_WT_Ubi	48.177	21.703	39657000	0	0	30341000	0	0	5837900	0	0	3477300			1189	1200;1201	1057	3341;3342;3343	3514;3515;3516	3515				3
EPRPNEECLQILGNAEKGAK	GlyGly (K);3 Deamidation (NQ)	2369.1169	0.11690361	397	sp|P04035-2|HMDH_HUMAN;sp|P04035|HMDH_HUMAN;sp|P04035-3|HMDH_HUMAN	yes	no	0	3	1	0	2					1					27.476	27.476	3	0.036323	6111	20190902_JH_EV_Ubi_3	48.053	6.1407	1527200	0	0	0	0	1527200	0	0	0	0			1190	397	1058	3344	3517	3517	132;133			0
EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR	Unmodified	2935.4464	0.44643467	1692	sp|Q8WUM4|PDC6I_HUMAN;sp|Q8WUM4-2|PDC6I_HUMAN	yes	no	0	0	0	0	0			1					1	1	35.85	35.85	3	0.0007427	10433	20190902_JH_WT_Ubi_2	57.339	8.9637	3444400	0	0	1583200	0	0	0	0	1861100	0			1191	1692	1059	3345;3346;3347	3518;3519;3520	3519				3
EPTSSEQGGLEGSGSAAGEGKPALSEEER	GlyGly (K)	2959.3279	0.32789526	1152	sp|Q04323|UBXN1_HUMAN;sp|Q04323-2|UBXN1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	27.98	27.98	3	6.6771E-17	6256	20190902_JH_EV_Ubi_2	122.22	92.253	277880000	24711000	21199000	29771000	24982000	12932000	28411000	22764000	49381000	63723000			1192	1152	1060	3348;3349;3350;3351;3352;3353;3354;3355;3356	3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531	3522		1153		11
EPTSSEQGGLEGSGSAAGEGKPALSEEER	GlyGly (K);Deamidation (NQ)	2960.3119	0.31191084	1152	sp|Q04323|UBXN1_HUMAN;sp|Q04323-2|UBXN1_HUMAN	yes	no	0	1	1	0	1				1	1	1			1	28.536	28.536	3	1.3815E-15	6813	20190902_JH_MUT_Ubi_2	119.87	93.66	6859300	0	0	0	1188700	611990	2074300	0	0	2984300			1193	1152	1060	3357;3358;3359;3360	3532;3533;3534;3535	3534	997	1153		4
EQAEAEVASLNR	Unmodified	1315.6368	0.63680763	439	sp|P06753-4|TPM3_HUMAN;sp|P06753-3|TPM3_HUMAN;sp|P06753-6|TPM3_HUMAN;sp|P06753-5|TPM3_HUMAN;sp|P06753-2|TPM3_HUMAN	yes	no	0	0	0	0	0				1				1		28.228	28.228	2;3	0.011704	6287	20190902_JH_EV_Ubi_2	77.288	3.5064	2466000	0	0	0	1104900	0	0	0	1361100	0			1194	439	1061	3361;3362	3536;3537	3536				1
EQAGGDATENFEDVGHSTDAR	Unmodified	2204.9206	0.92064664	372	sp|P00167-2|CYB5_HUMAN;sp|P00167-3|CYB5_HUMAN;sp|P00167|CYB5_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	28.248	28.248	3	0.00024539	5762	20190821_JH_WT_Ubi	79.88	64.977	15474000	667790	0	3357500	0	0	0	0	7142700	4306000			1195	372	1062	3363;3364;3365;3366	3538;3539;3540;3541	3539				4
EQANAVSEAVVSSVNTVATK	Unmodified	2003.0171	0.017113212	312	sp|O76070|SYUG_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	39.923	39.923	3	8.2276E-06	11430	20190902_JH_WT_Ubi_3	108.47	48.103	18261000	2706000	0	5057700	2232800	1746200	0	0	3015300	3503000			1196	312	1063	3367;3368;3369;3370;3371;3372	3542;3543;3544;3545;3546;3547	3547				6
EQELNQSISEKETLIAEIEELDR	GlyGly (K);Deamidation (NQ)	2830.372	0.3719919	1359	sp|Q15643|TRIPB_HUMAN	yes	yes	0	1	1	0	1				1						25.625	25.625	4	0.011763	5530	20190902_JH_EV_Ubi_2	47.814	9.0577	1101700	0	0	0	1101700	0	0	0	0	0			1197	1359	1064	3373	3548	3548	431	1404		1
EQELQQTLQQEQSVLDQLR	Unmodified	2312.1608	0.16081734	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1						1	47.112	47.112	3	5.1166E-05	13831	20190902_JH_WT_Ubi_3	101.54	40.415	5618300	0	0	4313700	0	0	0	0	0	1304500			1198	1332	1065	3374;3375	3549;3550	3550				2
EQFEKISSADPSGAFR	GlyGly (K)	1881.8857	0.88570511	1261	sp|Q13751|LAMB3_HUMAN	yes	yes	0	0	1	0	1					1				1	32.632	32.632	3	0.0013498	8997	20190902_JH_WT_Ubi_3	89.136	52.691	3926700	0	0	0	0	1128400	0	0	0	2798300			1199	1261	1066	3376;3377	3551;3552	3552		1326		2
EQFLDGDGWTSR	Unmodified	1409.6212	0.62115757	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	0						1				38.231	38.231	2	0.028219	10460	20190902_JH_MUT_Ubi_2	79.659	30.678	0	0	0	0	0	0	0	0	0	0			1200	702	1067	3378	3553	3553				1
EQFYHSCKQYGITGENVR	GlyGly (K)	2329.0546	0.054578126	1787	sp|Q96JB5-2|CK5P3_HUMAN;sp|Q96JB5|CK5P3_HUMAN;sp|Q96JB5-4|CK5P3_HUMAN	yes	no	0	0	1	0	1	1	1	1				1		1	26.933	26.933	3;4	1.0702E-33	7011	20190902_JH_WT_Ubi_3	185.14	102.28	74582000	18509000	11765000	20994000	0	0	0	12148000	0	11166000			1201	1787	1068	3379;3380;3381;3382;3383	3554;3555;3556;3557;3558	3558		1755		5
EQGNIYKPNNK	GlyGly (K)	1417.695	0.69499121	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1	1	1	1	18.134	18.134	3	0.0040794	3057	20190821_JH_EV_Ubi	99.788	28.567	574240000	38967000	0	0	64212000	45021000	71944000	53342000	134490000	166270000			1202	1147	1069	3384;3385;3386;3387;3388;3389;3390	3559;3560;3561;3562;3563;3564;3565	3559		1142;1143		6
EQGNIYKPNNKAMADELSEK	Oxidation (M);GlyGly (K)	2408.1278	0.12780265	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	1	2	2				1		1	1		24.865	24.865	3;4	8.7834E-09	4435	20190821_JH_EV_Ubi	127.49	94.134	187080000	128790000	0	0	0	2117100	0	19876000	36294000	0			1203	1147	1070	3391;3392;3393;3394;3395	3566;3567;3568;3569;3570;3571	3567		1141;1142;1143	716	6
EQGNIYKPNNKAMADELSEK	GlyGly (K)	2392.1329	0.13288803	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	0	2	1	1	1		1	1	2	1	1	26.978	26.978	3;4	1.9981E-05	5917	20190902_JH_EV_Ubi_3	112.91	76.314	242320000	51662000	20845000	23210000	0	7667100	25676000	31098000	43971000	38189000			1204	1147	1070	3396;3397;3398;3399;3400;3401;3402;3403;3404	3572;3573;3574;3575;3576;3577;3578;3579;3580	3573		1141;1142;1143		9
EQGNIYKPNNKAMADELSEK	Oxidation (M);2 GlyGly (K)	2522.1707	0.1707301	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	2	1	2				1	1		1	1	1	23.954	23.954	3	2.0298E-05	5072	20190902_JH_EV_Ubi_3	108.47	87.73	20831000	0	0	0	7182900	3199000	0	1382600	6417600	2648500			1205	1147	1070	3405;3406;3407;3408;3409	3581;3582;3583;3584;3585;3586	3582		1141;1142;1143	716	6
EQGNIYKPNNKAMADELSEK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2409.1118	0.11181823	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	1	1	1	2		1	1		1			1	1	24.949	24.949	3	5.4735E-07	4339	20190821_JH_MUT_Ubi	121.51	75.904	12174000	0	1947600	3635900	0	1128100	0	0	3649900	1812500			1206	1147	1070	3410;3411;3412;3413;3414	3587;3588;3589;3590;3591	3588	376;377;378;994	1141;1142;1143	716	5
EQGNIYKPNNKAMADELSEK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	2524.1388	0.13876127	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	2	2	1	2					1					29.184	29.184	3	0.031658	6650	20190902_JH_EV_Ubi_3	45.608	10.694	0	0	0	0	0	0	0	0	0	0			1207	1147	1070	3415	3592	3592	376;377;378;994	1141;1142;1143	716	1
EQGNIYKPNNKAMADELSEK	GlyGly (K);Deamidation (NQ)	2393.1169	0.11690361	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	1	1	0	2			1							28.448	28.448	3	0.001123	5804	20190821_JH_WT_Ubi	88.283	52.954	2860700	0	0	2860700	0	0	0	0	0	0			1208	1147	1070	3416	3593	3593	376;377;378;994	1141;1142;1143		1
EQGVTFPAIGSQAAEQAKASPALVAK	GlyGly (K)	2682.3977	0.39769356	1721	sp|Q92783-2|STAM1_HUMAN;sp|Q92783|STAM1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.109	39.109	3	1.2451E-12	9896	20190821_JH_EV_Ubi	119.18	85.494	118630000	18044000	16423000	11056000	7918600	8988200	23748000	19404000	6818000	6232000			1209	1721	1071	3417;3418;3419;3420;3421;3422;3423;3424;3425	3594;3595;3596;3597;3598;3599;3600;3601;3602	3594		1715		9
EQICEVEEGDKPDVDK	Unmodified	1888.836	0.8360373	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	1	1		1	1				1		26.236	26.236	3	7.5293E-07	7090	20190902_JH_WT_Ubi_2	127.3	67.218	129560000	2538100	0	44504000	4641500	0	0	0	77880000	0			1210	865	1072	3426;3427;3428;3429	3603;3604;3605;3606	3606				4
EQICEVEEGDKPDVDKAVEAAQVAFQR	GlyGly (K)	3173.4935	0.4935208	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	0	2			1							41.088	41.088	4	0.0031499	10393	20190821_JH_WT_Ubi	51.398	28.344	17021000	0	0	17021000	0	0	0	0	0	0			1211	865	1073	3430	3607	3607		840		1
EQIESINVGGTK	GlyGly (K);Deamidation (NQ)	1388.6783	0.6783381	90	sp|A6NKP2|D42E2_HUMAN	yes	yes	0	1	1	0	0		1								33.372	33.372	3	0.019236	7147	20190821_JH_MUT_Ubi	67.385	20.793	851570	0	851570	0	0	0	0	0	0	0			1212	90	1074	3431	3608	3608	35	79		0
EQIRQGLEELQKVLPGGDTYMHEGFER	Oxidation (M);3 Deamidation (NQ)	3177.4925	0.49245817	1961	sp|Q9H6X2-5|ANTR1_HUMAN;sp|Q9H6X2|ANTR1_HUMAN;sp|Q9H6X2-3|ANTR1_HUMAN;sp|Q9H6X2-4|ANTR1_HUMAN;sp|Q9H6X2-6|ANTR1_HUMAN;sp|Q9H6X2-2|ANTR1_HUMAN	yes	no	0	3	0	1	2							1			37.407	37.407	3	0.018719	9486	20190902_JH_MUT_Ubi_3	49.106	18.895	0	0	0	0	0	0	0	0	0	0			1213	1961	1075	3432	3609	3609	1247;1248;1249		1065	1
EQIVPKPEEEVAQK	Unmodified	1622.8516	0.85155143	611	sp|P18621-2|RL17_HUMAN;sp|P18621|RL17_HUMAN;sp|P18621-3|RL17_HUMAN	yes	no	0	0	0	0	1			1					1	1	26.56	26.56	2	0.019782	7219	20190902_JH_WT_Ubi_2	85.845	35.805	4081200	0	0	789370	0	0	0	0	1707900	1583900			1214	611	1076	3433;3434;3435	3610;3611;3612	3611				0
EQLAELQSGFVK	GlyGly (K);Deamidation (NQ)	1462.7304	0.73037367	1186	sp|Q08379-2|GOGA2_HUMAN;sp|Q08379|GOGA2_HUMAN	yes	no	0	1	1	0	0	1									40.717	40.717	2	0.032607	10395	20190821_JH_EV_Ubi	47.198	12.39	9985900	9985900	0	0	0	0	0	0	0	0			1215	1186	1077	3436	3613	3613	1007			0
EQLSDMMMINKQK	3 Oxidation (M);GlyGly (K)	1756.7794	0.77939082	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	1	3	1			1							42.957	42.957	3	0.032646	11216	20190821_JH_WT_Ubi	41.684	7.7159	2931400	0	0	2931400	0	0	0	0	0	0			1216	863	1078	3437	3614	3614				1
EQQEAIEHIDEVQNEIDR	Unmodified	2194.0138	0.013818748	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN;sp|P0DME0|SETLP_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	35.188	35.188	3	6.6911E-05	9829	20190902_JH_WT_Ubi_3	104.21	62.725	25622000	2103400	0	9372400	1275400	1132500	0	0	6799000	4939600			1217	1131	1079	3438;3439;3440;3441;3442;3443	3615;3616;3617;3618;3619;3620	3620				5
EQQGKVDEEIGLCSSTSVQAASGIR	GlyGly (K)	2762.3141	0.31409987	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN	yes	no	0	0	1	0	1	1									34.767	34.767	3	0.0294	8282	20190821_JH_EV_Ubi	48.685	20.609	0	0	0	0	0	0	0	0	0	0			1218	910	1080	3444	3621	3621		873		1
EQSELDQDLDDVEEVEEEETGEETKLK	GlyGly (K)	3278.4321	0.43214514	980	sp|P55209|NP1L1_HUMAN;sp|P55209-2|NP1L1_HUMAN	yes	no	0	0	1	0	1		1			1				1	44.773	44.773	3	5.2429E-07	11408	20190821_JH_MUT_Ubi	94.276	76.629	5683500	0	2937200	0	0	674760	0	0	0	2071500			1219	980	1081	3445;3446;3447	3622;3623;3624	3623		965;966		3
EQSPHVVQSVISLIMGMK	2 Oxidation (M)	2014.0227	0.022732637	323	sp|O94915|FRYL_HUMAN	yes	yes	0	0	0	2	0	1									45.731	45.731	3	0.014772	12278	20190821_JH_EV_Ubi	54.281	14.596	1426200	1426200	0	0	0	0	0	0	0	0			1220	323	1082	3448	3625	3625			149;150	1
EQTADGVAVIPVLQR	Unmodified	1594.8679	0.8678702	2152	sp|Q9UKK9|NUDT5_HUMAN	yes	yes	0	0	0	0	0				1						42.358	42.358	2	0.018096	10721	20190902_JH_EV_Ubi_2	74.237	31.899	0	0	0	0	0	0	0	0	0	0			1221	2152	1083	3449	3626	3626				1
EQTEGEYSSLEHESAR	Unmodified	1850.7919	0.7918643	223	sp|O43837|IDH3B_HUMAN;sp|O43837-2|IDH3B_HUMAN	yes	no	0	0	0	0	0			1							24.791	24.791	3	0.015843	4794	20190821_JH_WT_Ubi	56.29	25.982	3712100	0	0	3712100	0	0	0	0	0	0			1222	223	1084	3450	3627	3627				1
EQTLQGAEEDEDLEGPPSYKPPTPK	GlyGly (K)	2868.3301	0.33012709	1719	sp|Q92692|NECT2_HUMAN	yes	yes	0	0	1	0	1	1			1			1		1	34.147	34.147	3	1.705E-06	8172	20190821_JH_EV_Ubi	89.816	70.493	5620500	1261200	0	0	831960	0	0	972380	0	2555000			1223	1719	1085	3451;3452;3453;3454	3628;3629;3630;3631	3628		1711;1712		4
EQTNSGNLGKQSEKGK	2 GlyGly (K);2 Deamidation (NQ)	1933.8977	0.89772636	1503	sp|Q6ZNX1|YE028_HUMAN	yes	yes	0	2	2	0	2							1			18.088	18.088	3	0.034002	3862	20190902_JH_MUT_Ubi_3	55.335	21.65	0	0	0	0	0	0	0	0	0	0			1224	1503	1086	3455	3632	3632	476;1091			1
EQVPSLGSNVACGLAYTDYHK	Unmodified	2308.0794	0.079395893	70	sp|A1L0T0|ILVBL_HUMAN	yes	yes	0	0	0	0	0			1							38.584	38.584	3	0.024155	9358	20190821_JH_WT_Ubi	43.383	22.149	2106300	0	0	2106300	0	0	0	0	0	0			1225	70	1087	3456	3633	3633				1
ERDEAVMSR	Oxidation (M)	1107.4979	0.49787131	1678	sp|Q8TD10|MIPO1_HUMAN	yes	yes	0	0	0	1	1		1								22.311	22.311	2	0.028054	3518	20190821_JH_MUT_Ubi	64.265	14.138	523540	0	523540	0	0	0	0	0	0	0			1226	1678	1088	3457	3634	3634			964	1
ERDVYEELLTQAEIQGNINK	Unmodified	2361.1812	0.18121843	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	1								1	1	44.317	44.317	3	0.0003629	12896	20190902_JH_WT_Ubi_3	94.632	43.137	4287200	0	0	0	0	0	0	0	1964500	2322700			1227	863	1089	3458;3459	3635;3636	3636				2
EREEQETTSSKITELQLK	GlyGly (K)	2262.1339	0.13393388	534	sp|P12270|TPR_HUMAN;sp|P12270-2|TPR_HUMAN	yes	no	0	0	1	0	2	1	1				1				28.492	28.492	3	3.2049E-33	6706	20190902_JH_MUT_Ubi_2	192.24	138.99	4006100	0	1794100	0	0	0	2212000	0	0	0			1228	534	1090	3460;3461;3462	3637;3638;3639	3639		529		3
ERLEQQVPVNQVFGQDEMIDVIGVTK	Oxidation (M)	2986.507	0.50698602	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	1	1			1							44.447	44.447	3	0.0025041	11791	20190821_JH_WT_Ubi	87.881	45.018	0	0	0	0	0	0	0	0	0	0			1229	804	1091	3463	3640	3640			512	1
ERVLQQQQK	GlyGly (K);2 Deamidation (NQ)	1271.647	0.64697839	2250	sp|Q9Y613|FHOD1_HUMAN	yes	yes	0	2	1	0	1			1							41.096	41.096	2	0.023496	10443	20190821_JH_WT_Ubi	80.438	28.183	2122800	0	0	2122800	0	0	0	0	0	0			1230	2250	1092	3464	3641	3641	1339;1340;1341	2087		0
ESAKVGDQAQR	GlyGly (K)	1301.6324	0.63239096	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	1	0	1		1								12.834	12.834	3	0.013158	1985	20190821_JH_MUT_Ubi	82.489	47.686	1413900	0	1413900	0	0	0	0	0	0	0			1231	1015	1093	3465	3642	3642		1002		1
ESDGASDEAEESGSQGKLVEALR	GlyGly (K)	2477.1154	0.11538329	300	sp|O75688|PPM1B_HUMAN;sp|O75688-3|PPM1B_HUMAN	yes	no	0	0	1	0	1		1			1	1	1	1	1	32.37	32.37	3	1.2266E-11	8144	20190902_JH_MUT_Ubi_2	127.59	97.983	14008000	0	2223900	0	0	1245800	2640000	2391000	2630300	2877100			1232	300	1094	3466;3467;3468;3469;3470;3471	3643;3644;3645;3646;3647;3648	3645		287		5
ESEPLSKSK	GlyGly (K)	1117.5615	0.56151742	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	1	0	1					1		1			11.907	11.907	3	0.0068867	2529	20190902_JH_MUT_Ubi_3	99.688	41.254	9602300	0	0	0	0	3658700	0	5943500	0	0			1233	255	1095	3472;3473	3649;3650	3650		229;230		2
ESKEEETSIDVAGK	GlyGly (K)	1634.7635	0.76352429	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	23.282	23.282	3	2.8758E-05	5145	20190902_JH_MUT_Ubi_2	126.09	65.925	131730000	11072000	2767100	17361000	10389000	12721000	6155500	7297700	28434000	35531000			1234	955	1096	3474;3475;3476;3477;3478;3479;3480;3481;3482	3651;3652;3653;3654;3655;3656;3657;3658;3659	3655		916;918		9
ESKEEETSIDVAGKPNEVTK	GlyGly (K)	2303.1129	0.11286409	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	2	1	1	1	1	1	1	2	1	1	24.505	24.505	3;4	2.9612E-05	5268	20190902_JH_MUT_Ubi_3	100.69	66.99	311600000	45096000	11233000	32542000	30641000	41836000	26438000	43028000	37897000	42890000			1235	955	1097	3483;3484;3485;3486;3487;3488;3489;3490;3491;3492	3660;3661;3662;3663;3664;3665;3666;3667;3668;3669	3666		916;917;918		10
ESKEEETSIDVAGKPNEVTK	2 GlyGly (K)	2417.1558	0.15579154	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	2	0	2	1			1			1	1		25.391	25.391	3;4	6.4766E-12	5461	20190902_JH_EV_Ubi_2	135.29	88.245	7060600	3367100	0	0	1443500	0	0	867220	1382800	0			1236	955	1097	3493;3494;3495;3496	3670;3671;3672;3673	3671		916;917;918		4
ESKEEETSIDVAGKPNEVTK	GlyGly (K);Deamidation (NQ)	2304.0969	0.096879676	955	sp|P53985|MOT1_HUMAN	yes	yes	0	1	1	0	2					1					24.834	24.834	3	0.035994	5369	20190902_JH_EV_Ubi_3	64.346	37.391	1949900	0	0	0	0	1949900	0	0	0	0			1237	955	1097	3497	3674	3674	321	916;917;918		1
ESKGPIVPLNVADQK	GlyGly (K)	1707.9155	0.91554867	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1	1		1		1	1		1	31.652	31.652	3	9.6092E-05	7428	20190902_JH_EV_Ubi_2	114.31	74.244	36513000	6130800	4139400	0	4934600	0	6331400	9271100	0	5706000			1238	970	1098	3498;3499;3500;3501;3502;3503	3675;3676;3677;3678;3679;3680	3676		943;944		6
ESLELEDPSSGLGVTK	Unmodified	1659.8203	0.82031088	406	sp|P04233-2|HG2A_HUMAN	yes	yes	0	0	0	0	0									1	38.879	38.879	2	0.0041791	11114	20190902_JH_WT_Ubi_3	101.72	65.385	0	0	0	0	0	0	0	0	0	0			1239	406	1099	3504	3681	3681				1
ESLSFMIDTMKSTLK	Oxidation (M);2 GlyGly (K)	1973.9438	0.94381361	1954	sp|Q9H4I8|SEHL2_HUMAN;sp|Q9H4I8-3|SEHL2_HUMAN;sp|Q9H4I8-2|SEHL2_HUMAN	yes	no	0	0	2	1	1								1		66.385	66.385	3	0.036396	18364	20190902_JH_WT_Ubi_2	43.297	17.06	0	0	0	0	0	0	0	0	0	0			1240	1954	1100	3505	3682	3682				1
ESNLIEKMDDNLR	Oxidation (M);Deamidation (NQ)	1592.7352	0.73520105	1426	sp|Q5HYI7-5|MTX3_HUMAN;sp|Q5HYI7|MTX3_HUMAN	yes	no	0	1	0	1	1						1				30.567	30.567	2	0.031165	7534	20190902_JH_MUT_Ubi_2	61.353	7.2873	0	0	0	0	0	0	0	0	0	0			1241	1426	1101	3506	3683	3683	452		875	1
ESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLR	Unmodified	4511.2052	0.20520793	964	sp|P54727|RD23B_HUMAN;sp|P54727-2|RD23B_HUMAN	yes	no	0	0	0	0	0								1		43.66	43.66	4	0.0016428	13098	20190902_JH_WT_Ubi_2	34.247	17.661	2213700	0	0	0	0	0	0	0	2213700	0			1242	964	1102	3507	3684	3684				1
ESQVNFQEGQLNSGKKQIEK	3 GlyGly (K);Deamidation (NQ)	2633.2681	0.26813595	887	sp|P49454|CENPF_HUMAN	yes	yes	0	1	3	0	2					1					35.973	35.973	3	0.035587	8865	20190902_JH_EV_Ubi_3	41.257	16.97	0	0	0	0	0	0	0	0	0	0			1243	887	1103	3508	3685	3685	933			1
ESSKVDANEEVEALIVK	GlyGly (K)	1972.9953	0.99531514	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	1	36.905	36.905	3	4.5035E-11	8777	20190821_JH_WT_Ubi	146.27	89.317	234900000	0	32531000	27992000	27889000	27152000	35790000	34483000	17835000	31233000			1244	760	1104	3509;3510;3511;3512;3513;3514;3515;3516	3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696	3693		732;733		11
ESTGAQVQVAGDMLPNSTER	Oxidation (M)	2104.9695	0.96951109	1341;1342	sp|Q15365|PCBP1_HUMAN;sp|P57721-2|PCBP3_HUMAN;sp|P57721-3|PCBP3_HUMAN;sp|P57721-5|PCBP3_HUMAN;sp|P57721-4|PCBP3_HUMAN;sp|P57721|PCBP3_HUMAN;sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	no	no	0	0	0	1	0			1	1	1			1	1	31.605	31.605	2;3	3.8562E-09	7411	20190902_JH_EV_Ubi_3	123.63	72.806	14336000	0	0	2373900	2232500	1106600	0	0	4860300	3762200			1245	1341;1342	1105	3517;3518;3519;3520;3521	3697;3698;3699;3700;3701	3698			839	4
ESTLEAIGYICQDIDPEQLQDK	Unmodified	2564.1952	0.19521351	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	0	0	0			1						1	50.237	50.237	3	2.0148E-16	14715	20190902_JH_WT_Ubi_3	144.5	94.095	3995800	0	0	2954300	0	0	0	0	0	1041400			1246	1311	1106	3522;3523	3702;3703	3703				2
ESTLHLVLR	Unmodified	1066.6135	0.61349341	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	0	0	0									1	30.93	30.93	2	0.02465	8512	20190902_JH_WT_Ubi_3	62.107	17.73	250200000	0	0	0	0	0	0	0	0	250200000			1247	1074	1107	3524	3704	3704				0
ESVLIISTDPAHNISDAFDQK	Unmodified	2299.1332	0.1332056	212	sp|O43681|ASNA_HUMAN	yes	yes	0	0	0	0	0			1							44.563	44.563	3	0.0099993	11838	20190821_JH_WT_Ubi	52.731	5.805	4503400	0	0	4503400	0	0	0	0	0	0			1248	212	1108	3525	3705;3706	3705				2
ETAAVIFLHGLGDTGHSWADALSTIR	Unmodified	2737.3824	0.38237785	340	sp|O95372|LYPA2_HUMAN	yes	yes	0	0	0	0	0			1					1		50.759	50.759	3	6.853E-14	15200	20190902_JH_WT_Ubi_2	122.87	96.239	4817500	0	0	3167100	0	0	0	0	1650400	0			1249	340	1109	3526;3527	3707;3708;3709	3709				3
ETCSLWPGQALSLQVEQLLHHR	Unmodified	2601.3122	0.3121898	621	sp|P19623|SPEE_HUMAN	yes	yes	0	0	0	0	0			1							49.744	49.744	4	0.00016644	13877	20190821_JH_WT_Ubi	79.88	53.945	9739500	0	0	9739500	0	0	0	0	0	0			1250	621	1110	3528	3710	3710				1
ETDCGVHINAGPEIGVASTK	Unmodified	2053.9739	0.97386819	1166	sp|Q06210-2|GFPT1_HUMAN;sp|Q06210|GFPT1_HUMAN;sp|O94808|GFPT2_HUMAN	yes	no	0	0	0	0	0								1	1	32.71	32.71	3	0.01264	8942	20190902_JH_WT_Ubi_3	51.166	19.338	5768200	0	0	0	0	0	0	0	2124600	3643600			1251	1166	1111	3529;3530	3711;3712	3712				2
ETFASTASQLHSNVVNYVQQIVAPK	Unmodified	2730.3977	0.39769356	1952	sp|Q9H4A4|AMPB_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1	1	47.888	47.888	3	2.1508E-53	13040	20190821_JH_EV_Ubi	190.25	115.2	50222000	14936000	10274000	13820000	0	0	4042400	2237600	2727900	2184100			1252	1952	1112	3531;3532;3533;3534;3535;3536;3537	3713;3714;3715;3716;3717;3718;3719;3720	3713				8
ETIEQEKQAGES	GlyGly (K)	1461.6583	0.65833093	1050	sp|P62328|TYB4_HUMAN	yes	yes	0	0	1	0	1				1						21.445	21.445	2	0.00081901	4457	20190902_JH_EV_Ubi_2	121.61	73.325	1286500	0	0	0	1286500	0	0	0	0	0			1253	1050	1113	3538	3721	3721		1021		1
ETKAADPPAENSSAPEAEQGGAE	GlyGly (K)	2369.0255	0.025505647	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	1	0	1		1		1		1	1	1		24.644	24.644	3	1.1694E-22	5543	20190902_JH_MUT_Ubi_2	156.15	106.61	3184900	0	489410	0	896040	0	611970	1187500	0	0			1254	1090	1114	3539;3540;3541;3542;3543	3722;3723;3724;3725;3726	3724		1083		5
ETKDLYAPK	GlyGly (K)	1177.5979	0.59790293	1181	sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN	yes	no	0	0	1	0	1			1				1			21.073	21.073	3	0.015026	3869	20190821_JH_WT_Ubi	84.615	32.224	5094300	0	0	5094300	0	0	0	0	0	0			1255	1181	1115	3544;3545	3727;3728	3728		1171		2
ETLENKLQEEEEESNTSK	GlyGly (K)	2250.0135	0.013543977	2184	sp|Q9UPI3-2|FLVC2_HUMAN;sp|Q9UPI3|FLVC2_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1				30.974	30.974	3	3.798E-21	6603	20190821_JH_WT_Ubi	170.47	93.882	10822000	2160400	1127900	3749600	0	1651000	2133600	0	0	0			1256	2184	1116	3546;3547;3548;3549;3550	3729;3730;3731;3732;3733	3733		2044;2045		5
ETLPAEQDLTTKNVSIGIVGK	GlyGly (K)	2326.238	0.23800503	681	sp|P25786|PSA1_HUMAN;sp|P25786-2|PSA1_HUMAN	yes	no	0	0	1	0	1		1			1					38.983	38.983	3	0.0032369	9197	20190821_JH_MUT_Ubi	64.89	43.581	5336700	0	3620400	0	0	1716300	0	0	0	0			1257	681	1117	3551;3552	3734;3735	3735		664		2
ETNKTDNTEAPVTK	GlyGly (K)	1660.7904	0.79040774	343	sp|O95436|NPT2B_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			17.588	17.588	3	0.0061133	3660	20190902_JH_EV_Ubi_2	79.885	36.338	15894000	3181800	1428900	0	2787600	3436600	3130600	1928600	0	0			1258	343	1118	3553;3554;3555;3556;3557;3558	3736;3737;3738;3739;3740;3741	3737		314		6
ETNLDSLPLVDTHSK	Unmodified	1667.8366	0.83662965	474	sp|P08670|VIME_HUMAN	yes	yes	0	0	0	0	0			1						1	35.882	35.882	3	0.016041	10063	20190902_JH_WT_Ubi_3	58.831	23.825	20510000	0	0	9849400	0	0	0	0	0	10661000			1259	474	1119	3559;3560	3742;3743	3743				2
ETPLKPIPVEALCDFEGEQGLISR	GlyGly (K)	2811.4113	0.41129472	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1		1				1	1			48.624	48.624	3	5.7125E-07	12794	20190902_JH_MUT_Ubi_3	97.662	67.662	2808400	0	1260700	0	0	0	1032000	515770	0	0			1260	245	1120	3561;3562;3563	3744;3745;3746	3746		214		3
ETPLKPIPVEALCDFEGEQGLISR	Unmodified	2697.3684	0.36836727	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	0	0	1			1							48.389	48.389	3	8.6884E-09	13397	20190821_JH_WT_Ubi	112.47	78.805	2407500	0	0	2407500	0	0	0	0	0	0			1261	245	1120	3564	3747	3747				1
ETSGNLEQLLLAVVK	Unmodified	1612.9036	0.903587	479	sp|P08758|ANXA5_HUMAN	yes	yes	0	0	0	0	0			2						1	54.623	54.623	2;3	4.7937E-21	15672	20190821_JH_WT_Ubi	175.88	104.85	27827000	0	0	26417000	0	0	0	0	0	1409600			1262	479	1121	3565;3566;3567	3748;3749;3750	3748				2
ETVSEESNVLCLSKSPNK	GlyGly (K)	2134.0212	0.021212312	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	1	0	1								1	1	30.858	30.858	3	0.00079847	8718	20190902_JH_WT_Ubi_2	84.508	47.915	6097300	0	0	0	0	0	0	0	2890900	3206300			1263	545	1122	3568;3569	3751;3752	3751		537		2
ETVYCLNDDDETEVLKEDIIQGFR	GlyGly (K)	3014.3815	0.38151073	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	1	0	1						1				49.621	49.621	3	0.00019999	14262	20190902_JH_MUT_Ubi_2	78.456	54.228	599690	0	0	0	0	0	599690	0	0	0			1264	542	1123	3570	3753;3754	3753		534		2
EVAAFAQFGSDLDAATQQLLSR	Unmodified	2337.1601	0.16008906	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	0	0	0	0			1					1		54.841	54.841	3	6.1458E-22	16330	20190902_JH_WT_Ubi_2	147.35	111.86	14214000	0	0	11666000	0	0	0	0	2547600	0			1265	680	1124	3571;3572	3755;3756	3756				2
EVAEAYEVLSDKHK	GlyGly (K)	1730.8475	0.84752869	679	sp|P25686-2|DNJB2_HUMAN;sp|P25686|DNJB2_HUMAN	yes	no	0	0	1	0	1								1		27.809	27.809	3	0.026362	7585	20190902_JH_WT_Ubi_2	59.198	29.51	6071400	0	0	0	0	0	0	0	6071400	0			1266	679	1125	3573	3757	3757		662;663		1
EVAGHTEQLQMSR	Oxidation (M)	1500.6991	0.69909031	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	1	0	1	1	1	1	1			1	1	19.295	19.295	3	0.00038564	4714	20190902_JH_WT_Ubi_3	114.87	61.42	130660000	9361400	2457800	16510000	23792000	21498000	0	0	18240000	38800000		+	1267	7;477	1126	3574;3575;3576;3577;3578;3579;3580	3758;3759;3760;3761;3762;3763;3764;3765	3765			10	8
EVAGHTEQLQMSR	Oxidation (M);Deamidation (NQ)	1501.6831	0.6831059	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	0	1	0								1	1	20.478	20.478	2	0.013546	5157	20190902_JH_WT_Ubi_2	70.412	18.884	1577300	0	0	0	0	0	0	0	691520	885740		+	1268	7;477	1126	3581;3582	3766;3767	3766	712;713		10	1
EVATDVFNSKNLAVQAQKK	GlyGly (K);3 Deamidation (NQ)	2206.1117	0.11174188	342	sp|O95379|TFIP8_HUMAN	yes	yes	0	3	1	0	2									1	47.999	47.999	3	0.021077	14051	20190902_JH_WT_Ubi_3	55.097	11.306	1432500	0	0	0	0	0	0	0	0	1432500			1269	342	1127	3583	3768	3768	108;805;806	313		0
EVDEQMLNVQNK	Oxidation (M);Deamidation (NQ)	1462.661	0.66097347	1099;448	sp|P68371|TBB4B_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	1	0	1	0									1	27.032	27.032	2	0.0018263	7161	20190902_JH_WT_Ubi_3	99.788	46.618	8110400	0	0	0	0	0	0	0	0	8110400			1270	1099;448	1128	3584	3769	3769	161		249	1
EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR	Oxidation (M)	3349.5409	0.54086492	1052	sp|P62333|PRS10_HUMAN	yes	yes	0	0	0	1	0			1							43.963	43.963	3	0.016737	11591	20190821_JH_WT_Ubi	50.986	18.024	0	0	0	0	0	0	0	0	0	0			1271	1052	1129	3585	3770	3770			648	1
EVEAVIPDHCIFASNTSALPISEIAAVSK	Unmodified	3067.5536	0.55360186	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0			1					1	1	49.698	49.698	3	2.8187E-32	13898	20190821_JH_WT_Ubi	155.47	122.24	29358000	0	0	13609000	0	0	0	0	5560700	10189000			1272	818	1130	3586;3587;3588	3771;3772;3773;3774	3771				4
EVEHFLKAEPEK	GlyGly (K)	1568.7835	0.78347187	185	sp|O15427|MOT4_HUMAN	yes	yes	0	0	1	0	1				1						23.979	23.979	3	0.035482	5063	20190902_JH_EV_Ubi_2	59.265	12.279	18014000	0	0	0	18014000	0	0	0	0	0			1273	185	1131	3589	3775	3775		159		1
EVELNELEPEKQPMNAASGAAMSLAGAEK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3160.454	0.45402375	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	1	2	1	2	1		1	1	1			1	37.88	37.88	3	6.8761E-24	9225	20190821_JH_EV_Ubi	151.6	122.94	73130000	52040000	1484700	0	3393200	4723800	3292800	0	0	8196000			1274	462;463	1132	3590;3591;3592;3593;3594;3595;3596	3776;3777;3778;3779;3780;3781;3782;3783	3778	170;171;173;837	466;467;473	263;264	6
EVELNELEPEKQPMNAASGAAMSLAGAEK	Oxidation (M);GlyGly (K)	3143.4751	0.47509354	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	1	1	1	1	1	2	1	1	1	1		39.191	39.191	3	1.1966E-20	10667	20190902_JH_MUT_Ubi_2	125.79	94.815	42878000	7948600	4907400	2893700	8716800	3606600	6864500	6001000	1939200	0			1275	462;463	1132	3597;3598;3599;3600;3601;3602;3603;3604;3605	3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794	3790		466;467;473	263;264	11
EVELNELEPEKQPMNAASGAAMSLAGAEK	2 Oxidation (M);GlyGly (K)	3159.47	0.47000816	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	2	1	1	1	1	2	1	1	1	1	1	37.222	37.222	3	4.7427E-32	10430	20190902_JH_WT_Ubi_3	151.6	123.64	126050000	771700	3703100	4366000	27542000	28708000	19977000	13927000	10035000	17022000			1276	462;463	1132	3606;3607;3608;3609;3610;3611;3612;3613;3614;3615	3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809	3809		466;467;473	263;264	15
EVELNELEPEKQPMNAASGAAMSLAGAEK	GlyGly (K)	3127.4802	0.48017892	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	0	1	1	1			1	1	1	1		42.221	42.221	3	8.6074E-23	10519	20190821_JH_MUT_Ubi	135.06	99.399	39011000	13793000	9474700	0	0	2444700	6928700	4248600	2121800	0			1277	462;463	1132	3616;3617;3618;3619;3620;3621	3810;3811;3812;3813;3814;3815	3812		466;467;473		6
EVELNELEPEKQPMNAASGAAMSLAGAEKNGLVK	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	3769.8139	0.81386866	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	2	1	2	1	1		1		1	1			40.006	40.006	4	5.7985E-05	10898	20190902_JH_MUT_Ubi_2	65.194	39.348	15800000	4719300	2606100	0	1735100	0	4972600	1767100	0	0			1278	462;463	1133	3622;3623;3624;3625;3626	3816;3817;3818;3819;3820	3819	170;171;172;173;837	466;467;468;473	263;264	5
EVELNELEPEKQPMNAASGAAMSLAGAEKNGLVK	2 GlyGly (K);Deamidation (NQ)	3753.819	0.81895404	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	2	0	2	1	1				1				42.394	42.394	4	4.4413E-07	10545	20190821_JH_MUT_Ubi	80.245	56.912	14816000	5108500	6414600	0	0	0	3292800	0	0	0			1279	462;463	1133	3627;3628;3629	3821;3822;3823	3822	170;171;172;173;837	466;467;468;473		3
EVELNELEPEKQPMNAASGAAMSLAGAEKNGLVK	2 Oxidation (M);2 GlyGly (K);Deamidation (NQ)	3785.8088	0.80878328	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	2	2	2		1	1	2	1	1	2			37.981	37.981	4	6.7934E-10	10262	20190902_JH_MUT_Ubi_2	96.913	75.777	39409000	0	3017600	2620900	10711000	9479100	5848100	7732000	0	0			1280	462;463	1133	3630;3631;3632;3633;3634;3635;3636;3637	3824;3825;3826;3827;3828;3829;3830;3831	3828	170;171;172;173;837	466;467;468;473	263;264	8
EVEPALELLEPIDQK	Unmodified	1721.9087	0.90873196	740	sp|P31150|GDIA_HUMAN	yes	yes	0	0	0	0	0									1	48.965	48.965	3	0.0034528	14371	20190902_JH_WT_Ubi_3	78.401	31.697	977060	0	0	0	0	0	0	0	0	977060			1281	740	1134	3638	3832	3832				1
EVEVVEIIQATIIR	Unmodified	1610.9243	0.92432245	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	0	0			1							54.505	54.505	3	0.034146	15648	20190821_JH_WT_Ubi	46.704	3.202	1373100	0	0	1373100	0	0	0	0	0	0			1282	1306	1135	3639	3833	3833				1
EVGHNIYILALQLSR	Unmodified	1724.9574	0.95735391	1296	sp|Q14573|ITPR3_HUMAN	yes	yes	0	0	0	0	0			1					1		45.895	45.895	3	3.8299E-11	13855	20190902_JH_WT_Ubi_2	150.9	93.119	6590300	0	0	4879100	0	0	0	0	1711300	0			1283	1296	1136	3640;3641	3834;3835	3835				2
EVKGDLENAFLNLVQCIQNK	GlyGly (K)	2445.2322	0.23220814	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	1	0	1		1	1							53.321	53.321	3	2.3475E-09	15142	20190821_JH_WT_Ubi	129.05	66.193	5056800	0	1354700	3702100	0	0	0	0	0	0			1284	446	1137	3642;3643	3836;3837	3837		440;441		2
EVKYEAPQATDGLAGALDAR	GlyGly (K)	2188.076	0.076025075	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	0	1	0	1		1					1	1	1	36.234	36.234	3	2.9086E-14	9029	20190902_JH_MUT_Ubi_3	145.52	94.692	22929000	0	5219200	0	0	0	0	6139700	7227800	4341900			1285	260	1138	3644;3645;3646;3647	3838;3839;3840;3841	3839		247		4
EVLEKQPVLSQTEAR	GlyGly (K)	1839.969	0.96904081	707	sp|P28070|PSB4_HUMAN	yes	yes	0	0	1	0	1						1	1	1		28.377	28.377	3	0.00029062	6737	20190902_JH_MUT_Ubi_2	108.71	62.923	6588100	0	0	0	0	0	1693600	1514600	3379900	0			1286	707	1139	3648;3649;3650	3842;3843;3844	3842		690		3
EVLQALEELAVNYDQK	Unmodified	1860.9469	0.94690838	758	sp|P33176|KINH_HUMAN;sp|O60282-2|KIF5C_HUMAN;sp|O60282|KIF5C_HUMAN;sp|Q12840|KIF5A_HUMAN	yes	no	0	0	0	0	0			1							52.306	52.306	3	0.0089536	14799	20190821_JH_WT_Ubi	63.31	26.672	521750	0	0	521750	0	0	0	0	0	0			1287	758	1140	3651	3845	3845				1
EVLQELLMGVLTPER	Oxidation (M);Deamidation (NQ)	1742.9124	0.91243713	1672	sp|Q8TBZ2|MYBPP_HUMAN	yes	yes	0	1	0	1	0								1		38.86	38.86	3	0.017333	11448	20190902_JH_WT_Ubi_2	65.374	11.032	0	0	0	0	0	0	0	0	0	0			1288	1672	1141	3652	3846	3846	1155		962	1
EVNENFAIDLIAEQPVSEVETR	Unmodified	2501.2286	0.22856255	284	sp|O75380|NDUS6_HUMAN	yes	yes	0	0	0	0	0			1						1	51.228	51.228	3	4.1353E-07	14433	20190821_JH_WT_Ubi	105.57	57.835	1578500	0	0	1578500	0	0	0	0	0	0			1289	284	1142	3653;3654	3847;3848	3847				2
EVQQLQGKIR	2 Deamidation (NQ)	1199.651	0.65100113	2092	sp|Q9P2E9-3|RRBP1_HUMAN;sp|Q9P2E9-2|RRBP1_HUMAN;sp|Q9P2E9|RRBP1_HUMAN	yes	no	0	2	0	0	1		1								22.568	22.568	3	0.027987	3555	20190821_JH_MUT_Ubi	92.051	10.755	3013900	0	3013900	0	0	0	0	0	0	0			1290	2092	1143	3655	3849	3849	1290;1291;1292			1
EVSGIKAAYEAELGDAR	GlyGly (K)	1891.9276	0.92756992	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1		1				1				34.868	34.868	3	1.8671E-15	9132	20190902_JH_MUT_Ubi_2	158.91	100.08	7347100	0	3265400	0	0	0	4081800	0	0	0			1291	390;391	1144	3656;3657	3850;3851	3851		358		2
EVSYGEGKALAEEWSCPFMETSAK	Oxidation (M);GlyGly (K)	2835.2368	0.23676075	1020	sp|P61225|RAP2B_HUMAN	yes	yes	0	0	1	1	1			1							42.11	42.11	3	7.4191E-07	10833	20190821_JH_WT_Ubi	97.57	51.962	2445900	0	0	2445900	0	0	0	0	0	0			1292	1020	1145	3658	3852	3852		1005	635	1
EVTINQSLLAPLR	Unmodified	1452.83	0.83002813	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0		1	2			1	1	1	1	44.103	44.103	2;3	1.6031E-48	11663	20190821_JH_WT_Ubi	234.39	181.67	281440000	0	626030	272880000	0	0	1449800	1750300	1591000	3145400		+	1293	8;19	1146	3659;3660;3661;3662;3663;3664;3665	3853;3854;3855;3856;3857;3858;3859	3857				6
EVTPEGLQMVK	Oxidation (M)	1245.6275	0.6274885	649	sp|P22234|PUR6_HUMAN;sp|P22234-2|PUR6_HUMAN	yes	no	0	0	0	1	0			1							29.451	29.451	2	0.0075999	6134	20190821_JH_WT_Ubi	89.08	19.735	3409500	0	0	3409500	0	0	0	0	0	0			1294	649	1147	3666	3860	3860			400	0
EVTYQSIGASTR	Unmodified	1310.6466	0.64664404	41		yes	yes	0	0	0	0	0					1					24.162	24.162	3	0.013582	5180	20190902_JH_EV_Ubi_3	71.153	5.1305	1238500	0	0	0	0	1238500	0	0	0	0	+		1295	41	1148	3667	3861	3861				1
EVVDVTGLNQSHLSQHLNKGTPMK	3 Deamidation (NQ)	2634.2959	0.29593061	779	sp|P35680-3|HNF1B_HUMAN;sp|P35680-4|HNF1B_HUMAN;sp|P35680-2|HNF1B_HUMAN;sp|P35680|HNF1B_HUMAN	yes	no	0	3	0	0	1							1			38.038	38.038	3	0.03186	9699	20190902_JH_MUT_Ubi_3	40.012	6.6588	5605600	0	0	0	0	0	0	5605600	0	0			1296	779	1149	3668	3862	3862	278;279;907;908			0
EVVDYIIFGTVIQEVK	Unmodified	1851.003	0.002966698	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	0	0			1					1	1	54.577	54.577	3	2.5686E-19	15681	20190902_JH_WT_Ubi_3	167.03	116.92	14306000	0	0	9793100	0	0	0	0	1400900	3111600			1297	975	1150	3669;3670;3671	3863;3864;3865	3865				3
EVVEEAENGR	Deamidation (NQ)	1131.5044	0.50439648	431	sp|P06454-2|PTMA_HUMAN;sp|P06454|PTMA_HUMAN	yes	no	0	1	0	0	0								1		22.57	22.57	2	0.026948	5828	20190902_JH_WT_Ubi_2	76.1	34.447	7666800	0	0	0	0	0	0	0	7666800	0			1298	431	1151	3672	3866	3866	154			0
EVVPGDSVNSLLSILDVITGHQHPQR	Unmodified	2809.4723	0.47225549	1584	sp|Q8IY17-5|PLPL6_HUMAN;sp|Q8IY17-2|PLPL6_HUMAN;sp|Q8IY17-3|PLPL6_HUMAN;sp|Q8IY17|PLPL6_HUMAN;sp|Q8IY17-4|PLPL6_HUMAN	yes	no	0	0	0	0	0			1							54.45	54.45	4	0.00016824	15617	20190821_JH_WT_Ubi	73.809	57.485	8490300	0	0	8490300	0	0	0	0	0	0			1299	1584	1152	3673	3867	3867				1
EVWYFGLHYVDNK	Unmodified	1668.7936	0.79364262	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	0	0	0			1			1	1	1		42.211	42.211	2;3	1.6459E-44	10900	20190821_JH_WT_Ubi	213.35	120.81	73771000	0	0	33502000	0	0	8492500	2032600	29743000	0			1300	568	1153	3674;3675;3676;3677	3868;3869;3870;3871	3870				4
EVYPHVSTIINICLK	Unmodified	1784.9495	0.94949134	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN;sp|Q86VP6-3|CAND1_HUMAN	yes	no	0	0	0	0	0		1	1					1		42.442	42.442	3	0.00047245	10886	20190821_JH_WT_Ubi	103.11	66.164	21125000	0	5818300	13258000	0	0	0	0	2049300	0			1301	1557	1154	3678;3679;3680	3872;3873;3874	3873				3
EVYQQQQYGSGGR	Unmodified	1498.6801	0.68006943	1844	sp|Q99729-3|ROAA_HUMAN;sp|Q99729-4|ROAA_HUMAN;sp|Q99729-2|ROAA_HUMAN;sp|Q99729|ROAA_HUMAN	yes	no	0	0	0	0	0								1		23.017	23.017	2	1.5593E-05	5949	20190902_JH_WT_Ubi_2	127.52	77.412	6708300	0	0	0	0	0	0	0	6708300	0			1302	1844	1155	3681	3875	3875				0
EWHHFLVVNMK	Unmodified	1438.718	0.71797526	729	sp|P30086|PEBP1_HUMAN	yes	yes	0	0	0	0	0			1					1		33.555	33.555	3	1.1089E-06	7501	20190821_JH_WT_Ubi	150.81	87.594	22166000	0	0	16754000	0	0	0	0	5411800	0			1303	729	1156	3682;3683	3876;3877	3876				2
EWHHFLVVNMK	Oxidation (M)	1454.7129	0.71288988	729	sp|P30086|PEBP1_HUMAN	yes	yes	0	0	0	1	0								1		29.263	29.263	3	0.0017053	8080	20190902_JH_WT_Ubi_2	108.43	49.802	32365000	0	0	0	0	0	0	0	32365000	0			1304	729	1156	3684	3878	3878			454	1
EWMPVTKLGR	Oxidation (M);GlyGly (K)	1345.6813	0.6812554	576	sp|P15880|RS2_HUMAN	yes	yes	0	0	1	1	1						1				29.245	29.245	3	0.031943	7077	20190902_JH_MUT_Ubi_2	64.841	8.2929	0	0	0	0	0	0	0	0	0	0			1305	576	1157	3685	3879	3879			362	1
EYFGGFGEVESIELPMDNK	Oxidation (M)	2175.9671	0.96705148	1270	sp|Q14103-4|HNRPD_HUMAN;sp|Q14103-3|HNRPD_HUMAN;sp|Q14103-2|HNRPD_HUMAN;sp|Q14103|HNRPD_HUMAN	yes	no	0	0	0	1	0								1		48.652	48.652	3	0.028083	14636	20190902_JH_WT_Ubi_2	52.862	17.825	931430	0	0	0	0	0	0	0	931430	0			1306	1270	1158	3686	3880	3880			789	0
EYGSCSHHYQQLLQSLEQGAQEESR	Unmodified	2963.3104	0.31041147	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1							38.407	38.407	4	0.00072913	9287	20190821_JH_WT_Ubi	65.833	37.183	3967200	0	0	3967200	0	0	0	0	0	0			1307	1332	1159	3687	3881	3881				1
EYHAEGGKVPIK	GlyGly (K)	1440.7361	0.73612775	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1		1			1	1	1	1		20.137	20.137	3	0.003172	4154	20190902_JH_EV_Ubi_3	101.3	56.996	41942000	0	2216500	0	0	19220000	7237800	7103800	6163100	0			1308	382	1160	3688;3689;3690;3691;3692	3882;3883;3884;3885;3886	3882		339		5
EYKEAIHDMNFSNEDMIR	2 Oxidation (M);GlyGly (K)	2387.0158	0.015809358	1773	sp|Q96EI5|TCAL4_HUMAN;sp|Q96EI5-2|TCAL4_HUMAN	yes	no	0	0	1	2	1	1				1					27.656	27.656	3	1.6395E-08	5599	20190821_JH_EV_Ubi	124.5	7.0134	17515000	8228300	0	0	0	9287100	0	0	0	0			1309	1773	1161	3693;3694	3887;3888	3887		1746	997;998	2
EYKEAIHDMNFSNEDMIR	Oxidation (M);GlyGly (K)	2371.0209	0.020894736	1773	sp|Q96EI5|TCAL4_HUMAN;sp|Q96EI5-2|TCAL4_HUMAN	yes	no	0	0	1	1	1		1				1				31.673	31.673	3	8.5351E-05	7807	20190902_JH_MUT_Ubi_2	106.31	6.4976	5638800	0	1384400	0	0	0	4254300	0	0	0			1310	1773	1161	3695;3696	3889;3890	3890		1746	997;998	2
EYMEQQEINEPSLSSKR	Oxidation (M);GlyGly (K)	2196.9957	0.99572584	1618	sp|Q8N4S9-2|MALD2_HUMAN;sp|Q8N4S9|MALD2_HUMAN	yes	no	0	0	1	1	1	1			1		1	1			27.245	27.245	3	6.8188E-05	6045	20190902_JH_EV_Ubi_2	109.1	73.631	10484000	3470600	0	0	2384500	0	3205700	1423100	0	0			1311	1618	1162	3697;3698;3699;3700	3891;3892;3893;3894	3892		1621	945	4
FAAEHTIFASNTSSLQITSIANATTR	Unmodified	2751.3828	0.38277178	1390	sp|Q16836|HCDH_HUMAN;sp|Q16836-3|HCDH_HUMAN;sp|Q16836-2|HCDH_HUMAN	yes	no	0	0	0	0	0		1								42.945	42.945	3	0.014996	10669	20190821_JH_MUT_Ubi	42.73	18.086	1733700	0	1733700	0	0	0	0	0	0	0			1312	1390	1163	3701	3895	3895				1
FADDTYTESYISTIGVDFK	Unmodified	2170.9946	0.99464644	1058	sp|P62820|RAB1A_HUMAN;sp|P62820-3|RAB1A_HUMAN;sp|Q9H0U4|RAB1B_HUMAN	yes	no	0	0	0	0	0			1							49.969	49.969	3	0.0067698	13992	20190821_JH_WT_Ubi	60.334	32.808	1625500	0	0	1625500	0	0	0	0	0	0			1313	1058	1164	3702	3896	3896				1
FAFSPLSEEEEEDEQKEPMLK	Oxidation (M);GlyGly (K)	2641.1741	0.17414372	1631	sp|Q8NBN3-3|TM87A_HUMAN;sp|Q8NBN3|TM87A_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	38.295	38.295	3	2.1404E-07	9625	20190902_JH_MUT_Ubi_3	110.26	92.839	49894000	8010600	3956700	4302100	3983900	8395800	8526300	4692500	4216000	3810400			1314	1631	1165	3703;3704;3705;3706;3707;3708;3709;3710;3711	3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907	3902		1633;1634	948	11
FAFSPLSEEEEEDEQKEPMLK	GlyGly (K)	2625.1792	0.1792291	1631	sp|Q8NBN3-3|TM87A_HUMAN;sp|Q8NBN3|TM87A_HUMAN	yes	no	0	0	1	0	1		1					1			40.116	40.116	3	0.00022026	9709	20190821_JH_MUT_Ubi	82.709	59.38	8953000	0	4653100	0	0	0	0	4299900	0	0			1315	1631	1165	3712;3713	3908;3909	3908		1633;1634		2
FAFSPLSEEEEEDEQKEPMLKESFEGMK	2 Oxidation (M);2 GlyGly (K)	3579.5545	0.55452565	1631	sp|Q8NBN3-3|TM87A_HUMAN;sp|Q8NBN3|TM87A_HUMAN	yes	no	0	0	2	2	2						1				38.251	38.251	4	0.0062311	10474	20190902_JH_MUT_Ubi_2	45.305	30.931	3535700	0	0	0	0	0	3535700	0	0	0			1316	1631	1166	3714	3910	3910		1633;1634	948;949	1
FAHTNVESLVNEYDDNGEGIILFR	Deamidation (NQ)	2752.298	0.2980391	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	1	0	0	0			1					1		49.044	49.044	3	0.00020085	14766	20190902_JH_WT_Ubi_2	82.267	54.657	11362000	0	0	5806900	0	0	0	0	5555000	0			1317	730	1167	3715;3716	3911;3912	3912	258			2
FAHTNVESLVNEYDDNGEGIILFR	Unmodified	2751.314	0.31402351	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	0	0								1		48.345	48.345	3	1.7028E-08	14543	20190902_JH_WT_Ubi_2	108.96	79.631	6512300	0	0	0	0	0	0	0	6512300	0			1318	730	1167	3717	3913	3913				1
FALPSPQHILGLPVGQHIYLSAR	Unmodified	2513.3907	0.39069811	375	sp|P00387-2|NB5R3_HUMAN;sp|P00387|NB5R3_HUMAN;sp|P00387-3|NB5R3_HUMAN	yes	no	0	0	0	0	0		1	1					1		45.883	45.883	4	0.0055273	12314	20190821_JH_WT_Ubi	53.355	30.77	143600000	0	5323700	122690000	0	0	0	0	15592000	0			1319	375	1168	3718;3719;3720	3914;3915;3916	3915				3
FATASADGQIYIYDGK	Unmodified	1718.8152	0.81516593	268	sp|O75083|WDR1_HUMAN;sp|O75083-3|WDR1_HUMAN	yes	no	0	0	0	0	0									1	37.967	37.967	2	0.0018732	10802	20190902_JH_WT_Ubi_3	86.803	50.356	1836600	0	0	0	0	0	0	0	0	1836600			1320	268	1169	3721	3917	3917				1
FATLAELVQYYMEHHGQLK	Oxidation (M)	2293.1201	0.1201385	1163	sp|Q06124-3|PTN11_HUMAN;sp|Q06124-2|PTN11_HUMAN;sp|Q06124|PTN11_HUMAN	yes	no	0	0	0	1	0		1	1			1		1	1	46.377	46.377	4	0.00070132	12571	20190821_JH_WT_Ubi	78.902	51.776	48189000	0	2231900	10626000	0	0	3455300	0	26597000	5278600			1321	1163	1170	3722;3723;3724;3725;3726	3918;3919;3920;3921;3922	3920			725	5
FATLAELVQYYMEHHGQLK	Unmodified	2277.1252	0.12522387	1163	sp|Q06124-3|PTN11_HUMAN;sp|Q06124-2|PTN11_HUMAN;sp|Q06124|PTN11_HUMAN	yes	no	0	0	0	0	0			1							50.868	50.868	4	0.00016423	14289	20190821_JH_WT_Ubi	88.108	59.016	4062500	0	0	4062500	0	0	0	0	0	0			1322	1163	1170	3727	3923	3923				1
FAVSQMSALLDSAHLLASSTQR	Unmodified	2332.1845	0.18452967	144	sp|O14617-3|AP3D1_HUMAN;sp|O14617-4|AP3D1_HUMAN;sp|O14617-2|AP3D1_HUMAN;sp|O14617|AP3D1_HUMAN;sp|O14617-5|AP3D1_HUMAN	yes	no	0	0	0	0	0	1		1							50.087	50.087	3	1.1706E-07	13632	20190821_JH_EV_Ubi	109.77	75.375	4113700	1785400	0	2328300	0	0	0	0	0	0			1323	144	1171	3728;3729	3924;3925	3924				2
FCDYGKAPGAEEYAQQDVLK	GlyGly (K)	2402.0849	0.084875202	490	sp|P09543-2|CN37_HUMAN;sp|P09543|CN37_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	33.979	33.979	3	1.9936E-39	8193	20190902_JH_EV_Ubi_3	187.04	156.27	109140000	13812000	9854200	14041000	8486000	11676000	13645000	11948000	13950000	11731000			1324	490	1172	3730;3731;3732;3733;3734;3735;3736;3737;3738	3926;3927;3928;3929;3930;3931;3932;3933;3934	3928		483		9
FCFSIQQGLNADYVKGENLEAVVCEEPQVK	GlyGly (K)	3584.6916	0.69156868	1677	sp|Q8TCZ2-6|C99L2_HUMAN;sp|Q8TCZ2-3|C99L2_HUMAN;sp|Q8TCZ2-2|C99L2_HUMAN;sp|Q8TCZ2|C99L2_HUMAN	yes	no	0	0	1	0	1			1							47.282	47.282	3	0.0017083	12962	20190821_JH_WT_Ubi	52.054	33.187	4827000	0	0	4827000	0	0	0	0	0	0			1325	1677	1173	3739	3935	3935		1676;1677		1
FCLNLTPEAVLVIQKR	GlyGly (K);2 Deamidation (NQ)	2016.0714	0.071397389	1616	sp|Q8N4B5|PRR18_HUMAN	yes	yes	0	2	1	0	1		1								51.33	51.33	3	0.028103	13572	20190821_JH_MUT_Ubi	57.804	18.295	4730400	0	4730400	0	0	0	0	0	0	0			1326	1616	1174	3740	3936	3936	525;1135	1618		1
FDASFFGVHPK	Unmodified	1250.6084	0.60840804	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0							1	1		37.094	37.094	3	0.016134	9420	20190902_JH_MUT_Ubi_3	70.412	28.411	838290	0	0	0	0	0	0	838290	0	0			1327	881	1175	3741;3742	3937;3938	3937				2
FDDAVVQSDMK	Oxidation (M)	1269.5547	0.55471749	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	1	0	1				1					27.387	27.387	2	0.0040998	6033	20190902_JH_EV_Ubi_3	95.573	63.253	7774400	2154000	0	0	0	5620400	0	0	0	0			1328	519	1176	3743;3744	3939;3940	3940			305	1
FDGALNVDLTEFQTNLVPYPR	Unmodified	2408.2012	0.20122559	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0	1	1	1					1		54.143	54.143	3	2.772E-29	15463	20190821_JH_WT_Ubi	164.5	102.94	53069000	8981000	13976000	23766000	0	0	0	0	6346200	0			1329	1097;1098;1515;1858	1177	3745;3746;3747;3748	3941;3942;3943;3944	3943				4
FDLGQDVIDFTGHALALYR	Unmodified	2150.0797	0.07965389	904;740	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN;sp|P31150|GDIA_HUMAN	no	no	0	0	0	0	0			1					1		54.374	54.374	3	0.0026582	16231	20190902_JH_WT_Ubi_2	69.379	35.94	7069200	0	0	3538000	0	0	0	0	3531200	0			1330	904;740	1178	3749;3750	3945;3946	3946				2
FDLSQNHPLGMAIFLK	Oxidation (M)	1845.9447	0.94474031	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	1	0				1						42.163	42.163	3	0.023969	10665	20190902_JH_EV_Ubi_2	52.5	12.582	2535400	0	0	0	2535400	0	0	0	0	0			1331	881	1179	3751	3947	3947			551	1
FDNDLQLAMELSAKELEEWELR	Oxidation (M);GlyGly (K)	2808.3276	0.32762467	1595	sp|Q8IZ07|AN13A_HUMAN	yes	yes	0	0	1	1	1			1					1		53.251	53.251	3	0.012615	15010	20190821_JH_WT_Ubi	54.834	19.661	7817700	0	0	2788300	0	0	0	0	5029400	0			1332	1595	1180	3752;3753	3948;3949	3948		1588	938	2
FDNTYSFIHAK	Unmodified	1341.6354	0.63535107	311	sp|O76054-5|S14L2_HUMAN;sp|O76054|S14L2_HUMAN	yes	no	0	0	0	0	0								1	1	31.955	31.955	3	0.016134	8680	20190902_JH_WT_Ubi_3	70.412	19.144	6732500	0	0	0	0	0	0	0	3520200	3212300			1333	311	1181	3754;3755	3950;3951	3951				2
FDVNTSAVQVLIEHIGNLDR	Unmodified	2239.1597	0.15969512	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1							53.858	53.858	3	0.00011489	15390	20190821_JH_WT_Ubi	87.088	57.747	8094400	0	0	8094400	0	0	0	0	0	0			1334	1123	1182	3756	3952	3952				1
FEAAVKVIQSLPKNGSFQPTNEMMLK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	3039.4933	0.49330979	1444	sp|Q5T8D3-2|ACBD5_HUMAN;sp|Q5T8D3-3|ACBD5_HUMAN;sp|Q5T8D3|ACBD5_HUMAN	yes	no	0	3	1	1	2	1									45.33	45.33	3	0.019992	12209	20190821_JH_EV_Ubi	48.984	15.009	0	0	0	0	0	0	0	0	0	0			1335	1444	1183	3757	3953	3953	457;1074;1075	1459	882;883	1
FEDQPEGIDLEVVTESTGKER	GlyGly (K)	2491.1714	0.1714416	120	sp|O00267-2|SPT5H_HUMAN;sp|O00267|SPT5H_HUMAN	yes	no	0	0	1	0	1		1				1				39.837	39.837	3	1.8526E-05	10984	20190902_JH_MUT_Ubi_2	87.352	52.703	3755200	0	1653000	0	0	0	2102100	0	0	0			1336	120	1184	3758;3759	3954;3955	3955		107		2
FEEHVQSVDIAAFNK	Unmodified	1732.842	0.84204938	717	sp|P29692|EF1D_HUMAN;sp|P29692-2|EF1D_HUMAN;sp|P29692-3|EF1D_HUMAN;sp|P29692-4|EF1D_HUMAN	yes	no	0	0	0	0	0								1	1	35.403	35.403	3	6.9766E-08	9882	20190902_JH_WT_Ubi_3	141	84.453	12638000	0	0	0	0	0	0	0	7095700	5542200			1337	717	1185	3760;3761	3956;3957	3957				2
FEGKTFYVIGTQK	GlyGly (K)	1630.8355	0.83550744	71	sp|A2A2Y4-3|FRMD3_HUMAN;sp|A2A2Y4-5|FRMD3_HUMAN;sp|A2A2Y4-2|FRMD3_HUMAN;sp|A2A2Y4|FRMD3_HUMAN	yes	no	0	0	1	0	1			1			1				32.945	32.945	3	0.018062	8368	20190902_JH_MUT_Ubi_2	68.809	34.125	8079700	0	0	6572600	0	0	1507100	0	0	0			1338	71	1186	3762;3763	3958;3959	3958		70		2
FELQDSGSSLLPKEIVKVEK	2 GlyGly (K);Deamidation (NQ)	2474.2904	0.29043453	77	sp|A3KMH1-2|VWA8_HUMAN;sp|A3KMH1-3|VWA8_HUMAN;sp|A3KMH1|VWA8_HUMAN	yes	no	0	1	2	0	2							1			28.562	28.562	4	0.035122	6489	20190902_JH_MUT_Ubi_3	41.412	16.262	934850	0	0	0	0	0	0	934850	0	0			1339	77	1187	3764	3960	3960	738			0
FENAFLSHVVSQHQALLGTIR	Unmodified	2366.2495	0.24951318	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	0	0	0	0	1	2	1	1	1	2	1	1	2	42.151	42.151	3;4	4.1168E-29	10492	20190821_JH_MUT_Ubi	161.31	137.88	1154400000	18470000	131420000	287070000	4750600	8473300	153420000	39006000	211070000	300710000			1340	680	1188	3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776	3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973	3964				13
FENAFLSHVVSQHQALLGTIR	Deamidation (NQ)	2367.2335	0.23352877	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	1	0	0	0			1							43.548	43.548	4	0.019768	11409	20190821_JH_WT_Ubi	42.612	23.266	37403000	0	0	37403000	0	0	0	0	0	0			1341	680	1188	3777	3974	3974	241			1
FEPPLFHPNVYPSGTVCLSILEEDK	Unmodified	2887.4102	0.41023209	1088	sp|P63279|UBC9_HUMAN	yes	yes	0	0	0	0	0			1							49.621	49.621	3	0.0022682	13828	20190821_JH_WT_Ubi	59.646	27.879	6828300	0	0	6828300	0	0	0	0	0	0			1342	1088	1189	3778	3975	3975				1
FETLQAQAGK	Unmodified	1091.5611	0.56112349	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0								1		26.316	26.316	2	0.021756	7152	20190902_JH_WT_Ubi_2	76.827	8.4051	205630000	0	0	0	0	0	0	0	205630000	0		+	1343	8;19	1190	3779	3976	3976				1
FETLQAQAGKHGDDLR	GlyGly (K)	1898.9235	0.9234876	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1			1	1	1	1		1		24.831	24.831	4	0.007558	4832	20190821_JH_WT_Ubi	67.234	35.082	60485000	0	0	14602000	8160400	6754500	8018800	0	22949000	0		+	1344	8;19	1191	3780;3781;3782;3783;3784	3977;3978;3979;3980;3981	3980		23		5
FETVQKLR	GlyGly (K)	1133.6193	0.61930707	1849	sp|Q99829|CPNE1_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	23.618	23.618	3	0.011358	3868	20190821_JH_MUT_Ubi	110.31	46.776	20165000	0	1249800	2665200	0	0	2813000	3264300	7396400	2776700			1345	1849	1192	3785;3786;3787;3788;3789;3790	3982;3983;3984;3985;3986;3987	3982		1806		6
FFGSLPDSWASGHSVPVVTVVR	Unmodified	2343.2012	0.20116601	1880	sp|Q9BUP3-3|HTAI2_HUMAN;sp|Q9BUP3|HTAI2_HUMAN	yes	no	0	0	0	0	0			1					1		46.575	46.575	3	6.0205E-07	12651	20190821_JH_WT_Ubi	102.89	68.633	10860000	0	0	7219400	0	0	0	0	3640300	0			1346	1880	1193	3791;3792	3988;3989	3988				2
FFTGSLAEVEKSNSQVVEEQSYLLNIAEVQAVSR	GlyGly (K)	3884.9432	0.94322657	1211	sp|Q13049|TRI32_HUMAN	yes	yes	0	0	1	0	1		1	1					1		52.405	52.405	3	1.6911E-05	14797	20190821_JH_WT_Ubi	72.573	28.309	5976600	0	1195700	2207100	0	0	0	0	2573800	0			1347	1211	1194	3793;3794;3795	3990;3991;3992;3993	3992		1278		4
FGAFHSPALEDADFDGK	Unmodified	1822.8162	0.81622856	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	0	0	0								1	1	37.903	37.903	3	0.0015733	10708	20190902_JH_WT_Ubi_3	79.317	42.324	11113000	0	0	0	0	0	0	0	5793300	5319600			1348	2074	1195	3796;3797	3994;3995	3995				2
FGAHLGQPHSTTIIIR	Unmodified	1746.9529	0.95293723	582	sp|P16144-4|ITB4_HUMAN;sp|P16144-2|ITB4_HUMAN;sp|P16144-3|ITB4_HUMAN;sp|P16144|ITB4_HUMAN	yes	no	0	0	0	0	0	1									29.972	29.972	4	0.0064541	6405	20190821_JH_EV_Ubi	65.528	30.843	12233000	12233000	0	0	0	0	0	0	0	0			1349	582	1196	3798	3996	3996				1
FGAILAQGILDAGGHNVTISLQSR	Unmodified	2437.3078	0.30775635	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	0	0	0		1	1							46.911	46.911	3	4.1237E-08	12216	20190821_JH_MUT_Ubi	105.46	66.114	23126000	0	10143000	12983000	0	0	0	0	0	0			1350	1833	1197	3799;3800	3997;3998	3997				2
FGANAILGVSLAVCK	Unmodified	1518.8228	0.82283426	435;483	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN;sp|P13929-3|ENOB_HUMAN;sp|P13929-2|ENOB_HUMAN;sp|P13929|ENOB_HUMAN;sp|P09104|ENOG_HUMAN;sp|P09104-2|ENOG_HUMAN	no	no	0	0	0	0	0		1								46.705	46.705	2	0.023867	12287	20190821_JH_MUT_Ubi	60.301	33.412	22239000	0	22239000	0	0	0	0	0	0	0			1351	435;483	1198	3801	3999	3999				0
FGANAILGVSLAVCKAGAVEK	GlyGly (K)	2188.1674	0.16742304	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	1	0	1		1								43.583	43.583	3	7.9501E-06	10927	20190821_JH_MUT_Ubi	94.856	45.297	1942700	0	1942700	0	0	0	0	0	0	0			1352	435	1199	3802	4000	4000		428		1
FGAQLAHIQALISGIEAQLGDVR	Unmodified	2406.3019	0.30194269	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0	1	1	1					1		55.122	55.122	3	6.1661E-37	14701	20190821_JH_MUT_Ubi	174.81	137.69	116560000	6053300	90275000	13092000	0	0	0	0	7142200	0		+	1353	7;477	1200	3803;3804;3805;3806	4001;4002;4003;4004	4002				4
FGAVFLWDSGSSVGEITGHNK	Unmodified	2207.0647	0.064732107	268	sp|O75083|WDR1_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1	1	1	45.003	45.003	3	3.3196E-07	12080	20190821_JH_WT_Ubi	108.25	70.162	41117000	4095900	6775500	15200000	0	507950	3478600	2343700	4985000	3729500			1354	268	1201	3807;3808;3809;3810;3811;3812;3813;3814	4005;4006;4007;4008;4009;4010;4011;4012	4010				8
FGEVVDCTIKMDPNTGR	GlyGly (K)	2051.9405	0.94045957	1844	sp|Q99729-3|ROAA_HUMAN;sp|Q99729-4|ROAA_HUMAN;sp|Q99729-2|ROAA_HUMAN;sp|Q99729|ROAA_HUMAN	yes	no	0	0	1	0	1		1								35.263	35.263	3	0.03446	7854	20190821_JH_MUT_Ubi	53.946	22.973	0	0	0	0	0	0	0	0	0	0			1355	1844	1202	3815	4013	4013		1802		1
FGEVVDCTIKMDPNTGR	Oxidation (M);GlyGly (K)	2067.9354	0.93537419	1844	sp|Q99729-3|ROAA_HUMAN;sp|Q99729-4|ROAA_HUMAN;sp|Q99729-2|ROAA_HUMAN;sp|Q99729|ROAA_HUMAN	yes	no	0	0	1	1	1									1	30.712	30.712	3	0.028641	8305	20190902_JH_WT_Ubi_3	53.168	11.297	2951200	0	0	0	0	0	0	0	0	2951200			1356	1844	1202	3816	4014	4014		1802	1020	1
FGEVVDCTLKLDPITGR	GlyGly (K)	2033.0252	0.025175478	1270	sp|Q14103-4|HNRPD_HUMAN;sp|Q14103-3|HNRPD_HUMAN;sp|Q14103-2|HNRPD_HUMAN;sp|Q14103|HNRPD_HUMAN	yes	no	0	0	1	0	1						1	1			41.645	41.645	3	0.0016013	10891	20190902_JH_MUT_Ubi_3	83.292	53.4	4414300	0	0	0	0	0	2009900	2404500	0	0			1357	1270	1203	3817;3818	4015;4016	4016		1334		2
FGFELPQGPLGTSFKGK	GlyGly (K)	1922.989	0.98904797	1945	sp|Q9H3M7-2|TXNIP_HUMAN;sp|Q9H3M7|TXNIP_HUMAN	yes	no	0	0	1	0	1		1								43.674	43.674	3	2.2882E-05	10969	20190821_JH_MUT_Ubi	113.52	80.704	2219600	0	2219600	0	0	0	0	0	0	0			1358	1945	1204	3819	4017	4017		1879		1
FGGEHVPNSPFQVTALAGDQPSVQPPLR	Unmodified	2944.4832	0.48315453	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1		1	1	43.991	43.991	3	1.0689E-31	11667	20190821_JH_WT_Ubi	148.72	123.57	46291000	2846100	1925000	19490000	516510	958690	1101200	0	8331800	11122000			1359	637	1205	3820;3821;3822;3823;3824;3825;3826;3827	4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028	4026				11
FGGGNPELLTQMVSK	Unmodified	1576.7919	0.79192806	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0								1		41.852	41.852	2	0.031402	12450	20190902_JH_WT_Ubi_2	55.98	20.469	2688500	0	0	0	0	0	0	0	2688500	0			1360	818	1206	3828	4029	4029				1
FGHEFLEFEFRPDGK	Unmodified	1853.8737	0.87368386	1023	sp|P61326-2|MGN_HUMAN;sp|P61326|MGN_HUMAN;sp|Q96A72|MGN2_HUMAN	yes	no	0	0	0	0	1			1							39.785	39.785	4	0.0040759	9858	20190821_JH_WT_Ubi	81.239	25.1	1621600	0	0	1621600	0	0	0	0	0	0			1361	1023	1207	3829	4030	4030				1
FGIVTSSAGTGTTEDTEAK	Unmodified	1870.8796	0.87961668	1109	sp|P82979|SARNP_HUMAN	yes	yes	0	0	0	0	0							1			31.787	31.787	2	0.011948	7610	20190902_JH_MUT_Ubi_3	59.75	13.841	338860	0	0	0	0	0	0	338860	0	0			1362	1109	1208	3830	4031	4031				1
FGKTVVSCEGYESSEDQYVLR	GlyGly (K)	2566.1646	0.16458209	1763	sp|Q96BY9|SARAF_HUMAN	yes	yes	0	0	1	0	1		1				1				34.57	34.57	3	2.8949E-06	9090	20190902_JH_MUT_Ubi_2	98.443	35.106	1144900	0	0	0	0	0	1144900	0	0	0			1363	1763	1209	3831;3832	4032;4033	4033		1741		2
FGLALAVAGGVVNSALYNVDAGHR	Unmodified	2370.2444	0.24442781	771	sp|P35232|PHB_HUMAN;sp|P35232-2|PHB_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	50.335	50.335	3	1.1211E-09	15118	20190902_JH_WT_Ubi_2	114.87	61.465	125330000	0	19109000	81183000	0	0	0	1377300	8914200	14744000			1364	771	1210	3833;3834;3835;3836;3837	4034;4035;4036;4037;4038	4037				5
FGQAATMEGIGAIGGTPPAFNR	Oxidation (M)	2178.0528	0.052787212	1337	sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN	yes	no	0	0	0	1	0				1	1			1	1	40.884	40.884	3	9.5411E-08	10263	20190902_JH_EV_Ubi_2	110.33	62.758	12814000	0	0	0	1528800	1509300	0	0	4441300	5334700			1365	1337	1211	3838;3839;3840;3841	4039;4040;4041;4042;4043	4039			835	5
FGQAATMEGIGAIGGTPPAFNR	Unmodified	2162.0579	0.05787259	1337	sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN	yes	no	0	0	0	0	0			1							44.37	44.37	2	0.028201	11773	20190821_JH_WT_Ubi	48.391	20.71	1603600	0	0	1603600	0	0	0	0	0	0			1366	1337	1211	3842	4044	4044				0
FGTVLTEHVAAAELGAR	Unmodified	1740.9159	0.91588303	210	sp|O43598-2|DNPH1_HUMAN;sp|O43598|DNPH1_HUMAN	yes	no	0	0	0	0	0			1		1	1		1		36.658	36.658	3	1.0018E-07	8715	20190821_JH_WT_Ubi	123.63	72.617	15214000	0	0	8471500	0	842180	1763600	0	4136800	0			1367	210	1212	3843;3844;3845;3846	4045;4046;4047;4048	4047				4
FGVEQDVDMVFASFIR	Oxidation (M)	1874.8873	0.88728501	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	1	0		1	1	1		1	1	1	1	55	55	3	6.4555E-14	16365	20190902_JH_WT_Ubi_2	155.37	108.69	35545000	0	2189500	12783000	507410	0	1418800	1568100	12158000	4919700			1368	556	1213	3847;3848;3849;3850;3851;3852;3853	4049;4050;4051;4052;4053;4054;4055	4054			342	7
FGVEQDVDMVFASFIR	Unmodified	1858.8924	0.89237039	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0		1	1							55.999	55.999	3	0.00036006	16040	20190821_JH_WT_Ubi	99.238	53.375	8414200	0	932360	7481900	0	0	0	0	0	0			1369	556	1213	3854;3855	4056;4057;4058	4057				3
FGVEQPEGDEDLTKEK	GlyGly (K)	1933.8905	0.89051572	674	sp|P24928|RPB1_HUMAN;sp|P24928-2|RPB1_HUMAN	yes	no	0	0	1	0	1		1				1	1			29.133	29.133	3	8.4107E-14	5681	20190821_JH_MUT_Ubi	154.88	108.73	9380600	0	1643800	0	0	0	3017800	4719000	0	0			1370	674	1214	3856;3857;3858	4059;4060;4061	4059		655		3
FGVKTEQEDVLAKELEDVNK	GlyGly (K);2 Deamidation (NQ)	2406.1802	0.18021537	1188	sp|Q08499-5|PDE4D_HUMAN;sp|Q08499-8|PDE4D_HUMAN;sp|Q08499-4|PDE4D_HUMAN;sp|Q08499-3|PDE4D_HUMAN;sp|Q08499-2|PDE4D_HUMAN;sp|Q08499-10|PDE4D_HUMAN;sp|Q08499-9|PDE4D_HUMAN;sp|Q08499-6|PDE4D_HUMAN;sp|Q08499-11|PDE4D_HUMAN;sp|Q08499|PDE4D_HUMAN	yes	no	0	2	1	0	2							1			28.023	28.023	3	0.030492	6380	20190902_JH_MUT_Ubi_3	59.252	12.38	0	0	0	0	0	0	0	0	0	0			1371	1188	1215	3859	4062	4062	390;1008			1
FHDLPSEKPESTNIDTEK	GlyGly (K)	2200.0284	0.02840618	1696	sp|Q8WV83-2|S35F5_HUMAN;sp|Q8WV83|S35F5_HUMAN	yes	no	0	0	1	0	1									1	26.436	26.436	3	0.018103	6915	20190902_JH_WT_Ubi_3	66.809	37.469	1615500	0	0	0	0	0	0	0	0	1615500			1372	1696	1216	3860	4063	4063		1690		0
FHIHLYNQDSLIACVLPYHETR	Unmodified	2725.3435	0.34348992	1957	sp|Q9H583|HEAT1_HUMAN	yes	yes	0	0	0	0	0			1							42.529	42.529	4	0.0021531	10997	20190821_JH_WT_Ubi	62.556	37.681	4389100	0	0	4389100	0	0	0	0	0	0			1373	1957	1217	3861	4064	4064				1
FICHVVGITYQHIDR	Unmodified	1856.9356	0.93557261	2105	sp|Q9UBQ5-2|EIF3K_HUMAN;sp|Q9UBQ5|EIF3K_HUMAN	yes	no	0	0	0	0	0	1									32.261	32.261	4	0.0033	7320	20190821_JH_EV_Ubi	75.89	44.309	1547000	1547000	0	0	0	0	0	0	0	0			1374	2105	1218	3862	4065	4065				1
FIDNTLYFIAEDDENLESDYFGK	Unmodified	2757.2334	0.23337316	1272	sp|Q14116|IL18_HUMAN	yes	yes	0	0	0	0	0								1		54.977	54.977	3	9.1058E-30	16329	20190902_JH_WT_Ubi_2	165.13	133.04	1866700	0	0	0	0	0	0	0	1866700	0			1375	1272	1219	3863	4066	4066				1
FIETSAALHHNVQALFEGVVR	Unmodified	2337.223	0.22296408	972	sp|P55042|RAD_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1			41.964	41.964	4	0.0095786	10442	20190821_JH_MUT_Ubi	50.957	31.404	15085000	0	6876500	2112900	0	0	3295500	2800000	0	0			1376	972	1220	3864;3865;3866;3867	4067;4068;4069;4070	4067				4
FIFTLVGGHISPLLVACEK	Unmodified	2100.1442	0.1441684	70	sp|A1L0T0|ILVBL_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	49.681	49.681	3	3.993E-24	13863	20190821_JH_WT_Ubi	169.15	131.53	16139000	0	1155600	9862500	0	0	0	0	1740800	3379900			1377	70	1221	3868;3869;3870;3871	4071;4072;4073;4074	4072				4
FIIDNTKGQMLGLGNPSFSDPFTGGGR	GlyGly (K)	2939.4236	0.42359074	2200	sp|Q9Y263|PLAP_HUMAN	yes	yes	0	0	1	0	1		1				1				48.415	48.415	3	0.0030555	13941	20190902_JH_MUT_Ubi_2	55.158	23.558	1745600	0	1205800	0	0	0	539830	0	0	0			1378	2200	1222	3872;3873	4075;4076	4076		2056		2
FIIDNTKGQMLGLGNPSFSDPFTGGGR	Oxidation (M);GlyGly (K)	2955.4185	0.41850536	2200	sp|Q9Y263|PLAP_HUMAN	yes	yes	0	0	1	1	1							1	1		45.872	45.872	3	5.7681E-07	13919	20190902_JH_WT_Ubi_2	94.837	47.445	5461700	0	0	0	0	0	0	3045200	2416600	0			1379	2200	1222	3874;3875	4077;4078	4078		2056	1141	2
FIIPNVVKYSPNCK	GlyGly (K)	1791.9342	0.93417563	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	1	0	1		1					1	1		38.196	38.196	3	0.0080099	9566	20190902_JH_MUT_Ubi_3	75.483	30.226	12552000	0	5721600	0	0	0	0	3742800	3088000	0			1380	373	1223	3876;3877;3878	4079;4080;4081;4082	4081		334		4
FIKALDENVHTDNMIFEPYGK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2612.2105	0.21046965	28		yes	yes	0	2	1	1	1									2	39.076	39.076	3	0.037266	11186	20190902_JH_WT_Ubi_3	47.222	17.415	2746200	0	0	0	0	0	0	0	0	2746200	+		1381	28	1224	3879;3880	4083;4084	4084	15			1
FIQENIFGICPHMTEDNK	Oxidation (M)	2207.998	0.99797445	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	1	0			1			1		1	1	38.606	38.606	3	1.9756E-08	11464	20190902_JH_WT_Ubi_2	126.63	56.1	21599000	0	0	7752800	0	0	1435800	0	7615400	4795100			1382	730	1225	3881;3882;3883;3884	4085;4086;4087;4088	4087			455	4
FIQENIFGICPHMTEDNK	Unmodified	2192.0031	0.0030598275	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	0	0									1	41.215	41.215	3	0.0043459	11908	20190902_JH_WT_Ubi_3	66.673	5.4612	3071500	0	0	0	0	0	0	0	0	3071500			1383	730	1225	3885	4089	4089				1
FISGSMAGATAQTFIYPMEVMK	3 Oxidation (M)	2427.116	0.11604067	1475	sp|Q6NUK1|SCMC1_HUMAN;sp|Q6NUK1-2|SCMC1_HUMAN	yes	no	0	0	0	3	0									1	41.07	41.07	3	0.0069148	11875	20190902_JH_WT_Ubi_3	50.237	22.154	1774400	0	0	0	0	0	0	0	0	1774400			1384	1475	1226	3886	4090	4090			899;900;901	1
FITHAPPGEFNEVFNDVR	Unmodified	2088.0065	0.0064889465	941	sp|P52907|CAZA1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	40.198	40.198	3	8.1388E-12	10055	20190821_JH_WT_Ubi	145.55	77.289	11824000	0	0	5947700	0	0	0	0	3632000	2244200			1385	941	1227	3887;3888;3889	4091;4092;4093	4091				3
FIYGNQDLFATSQSKEFDPLGPLPPGWEK	GlyGly (K)	3394.651	0.65100772	1786	sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	50.492	50.492	3;4	1.0939E-10	14173	20190821_JH_WT_Ubi	102.65	79.932	126970000	1245400	34150000	48641000	0	0	5916500	743830	23088000	13186000			1386	1786	1228	3890;3891;3892;3893;3894;3895;3896	4094;4095;4096;4097;4098;4099;4100;4101	4098		1752;1753		8
FIYGNQDLFATSQSKEFDPLGPLPPGWEK	GlyGly (K);Deamidation (NQ)	3395.635	0.6350233	1786	sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN	yes	no	0	1	1	0	1								1	1	51.941	51.941	3	0.0057564	14870	20190902_JH_WT_Ubi_3	59.646	37.086	2474600	0	0	0	0	0	0	0	1539900	934700			1387	1786	1228	3897;3898	4102;4103	4103	1186;1187	1752;1753		2
FKGPGDTSNFDDYEEEEIR	GlyGly (K)	2361.0033	0.0033136416	601	sp|P17612-2|KAPCA_HUMAN;sp|P17612|KAPCA_HUMAN	yes	no	0	0	1	0	1						1	1			34.547	34.547	3	4.8642E-05	8538	20190902_JH_MUT_Ubi_3	104.89	84.506	2511500	0	0	0	0	0	1565800	945710	0	0			1388	601	1229	3899;3900	4104;4105	4105		588		2
FKLPPGEYILVPSTFEPNK	GlyGly (K)	2289.2045	0.20452005	602	sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN	yes	no	0	0	1	0	1							1			45.229	45.229	3	0.021641	12063	20190902_JH_MUT_Ubi_3	50.392	9.8777	2247300	0	0	0	0	0	0	2247300	0	0			1389	602	1230	3901	4106	4106		590;591		1
FKNPNNVLIEQAELEKQQSLLQEK	3 GlyGly (K);2 Deamidation (NQ)	3183.6048	0.60478581	1562	sp|Q86X53|ERIC1_HUMAN	yes	yes	0	2	3	0	2								1		44.91	44.91	3	0.025478	13478	20190902_JH_WT_Ubi_2	45.069	21.204	0	0	0	0	0	0	0	0	0	0			1390	1562	1231	3902	4107	4107	506;507	1547;1548;1549		1
FKTTVGSVK	GlyGly (K)	1079.5975	0.597509	1899	sp|Q9BXS5|AP1M1_HUMAN;sp|Q9BXS5-2|AP1M1_HUMAN	yes	no	0	0	1	0	1			1							20.403	20.403	3	0.008712	3771	20190821_JH_WT_Ubi	96.113	38.564	932070	0	0	932070	0	0	0	0	0	0			1391	1899	1232	3903	4108	4108		1840		1
FLAAGTHLGGTNLDFQMEQYIYK	Oxidation (M)	2632.2632	0.26317392	480	sp|P08865|RSSA_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	41.411	41.411	3	5.4282E-57	12395	20190902_JH_WT_Ubi_2	205	157.8	64287000	0	7724400	25339000	0	0	6387500	3054400	9649600	12132000			1392	480	1233	3904;3905;3906;3907;3908;3909	4109;4110;4111;4112;4113;4114	4113			282	6
FLAITTDCLQLLAYGNQESK	Unmodified	2284.1409	0.14093352	561	sp|P14923|PLAK_HUMAN	yes	yes	0	0	0	0	0	1									51.632	51.632	3	0.037129	13972	20190821_JH_EV_Ubi	36.127	0	398560	398560	0	0	0	0	0	0	0	0			1393	561	1234	3910	4115	4115				1
FLEGTSCIAGVFVDATK	Unmodified	1813.892	0.89203604	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1	1	1			2	1		1	48.131	48.131	2;3	4.2008E-14	13322	20190821_JH_WT_Ubi	153.41	108.13	11278000	0	669370	5289400	0	0	2073700	532100	0	2713900			1394	1332	1235	3911;3912;3913;3914;3915;3916;3917	4116;4117;4118;4119;4120;4121;4122	4121				6
FLEHLSGAGK	Unmodified	1057.5556	0.55564418	1136	sp|Q01813|PFKAP_HUMAN	yes	yes	0	0	0	0	0			1						1	25.469	25.469	3	1.1587E-06	6579	20190902_JH_WT_Ubi_3	154.85	100.07	7181300	0	0	2848800	0	0	0	0	0	4332500			1395	1136	1236	3918;3919	4123;4124	4124				2
FLEQQNKLLETK	GlyGly (K)	1603.857	0.85697116	19;8;14	CON__P08729;sp|Q9NSB2|KRT84_HUMAN;CON__Q9NSB2;CON__Q6ISB0;CON__Q61726;sp|P08729|K2C7_HUMAN;CON__Q3KNV1;sp|P78386|KRT85_HUMAN;CON__P78386;sp|O43790|KRT86_HUMAN;CON__O43790;sp|P78385|KRT83_HUMAN;CON__Q6NT21;CON__P78385;sp|Q14533|KRT81_HUMAN;CON__Q14533	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	30.179	30.179	3	2.5777E-18	6583	20190821_JH_EV_Ubi	182.41	121.81	748320000	37659000	68418000	81450000	44843000	37294000	131000000	115400000	133770000	98491000		+	1396	8;19;14	1237	3920;3921;3922;3923;3924;3925;3926;3927;3928	4125;4126;4127;4128;4129;4130;4131;4132;4133	4125		25;26		9
FLEQQNKLLETK	GlyGly (K);Deamidation (NQ)	1604.841	0.84098675	19;8;14	CON__P08729;sp|Q9NSB2|KRT84_HUMAN;CON__Q9NSB2;CON__Q6ISB0;CON__Q61726;sp|P08729|K2C7_HUMAN;CON__Q3KNV1;sp|P78386|KRT85_HUMAN;CON__P78386;sp|O43790|KRT86_HUMAN;CON__O43790;sp|P78385|KRT83_HUMAN;CON__Q6NT21;CON__P78385;sp|Q14533|KRT81_HUMAN;CON__Q14533	no	no	0	1	1	0	1						1	1		1	31.258	31.258	3	8.8355E-05	8554	20190902_JH_WT_Ubi_3	138.42	87.331	25768000	0	0	0	0	0	9226900	8395700	0	8145400		+	1397	8;19;14	1237	3929;3930;3931	4134;4135;4136	4136	6;719;720	25;26		3
FLEQQNKLLETK	GlyGly (K);2 Deamidation (NQ)	1605.825	0.82500233	19;8;14	CON__P08729;sp|Q9NSB2|KRT84_HUMAN;CON__Q9NSB2;CON__Q6ISB0;CON__Q61726;sp|P08729|K2C7_HUMAN;CON__Q3KNV1;sp|P78386|KRT85_HUMAN;CON__P78386;sp|O43790|KRT86_HUMAN;CON__O43790;sp|P78385|KRT83_HUMAN;CON__Q6NT21;CON__P78385;sp|Q14533|KRT81_HUMAN;CON__Q14533	no	no	0	2	1	0	1							1			2.5754	2.5754	2	0.0088726	688	20190902_JH_MUT_Ubi_3	89.029	31.244	0	0	0	0	0	0	0	0	0	0		+	1398	8;19;14	1237	3932	4137	4137	6;719;720	25;26		1
FLEQQNKMLETK	GlyGly (K)	1621.8134	0.81339179	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931	no	no	0	0	1	0	1		1				1	1			28.099	28.099	3	0.00079508	5316	20190821_JH_MUT_Ubi	115.92	64.653	9711300	0	2767800	0	0	0	3362200	3581300	0	0		+	1399	6	1238	3933;3934;3935	4138;4139;4140	4138		11		3
FLEQQNKVLETK	GlyGly (K)	1589.8413	0.8413211	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P12035|K2C3_HUMAN;CON__P12035;CON__Q8VED5	no	no	0	0	1	0	1	1	1	1	1	1	1	1	2	1	27.542	27.542	2;3	1.9954E-44	6085	20190902_JH_MUT_Ubi_3	216.03	141.87	414800000	28817000	28573000	51206000	21594000	63487000	72813000	58816000	48969000	40520000		+	1400	3	1239	3936;3937;3938;3939;3940;3941;3942;3943;3944;3945	4141;4142;4143;4144;4145;4146;4147;4148;4149;4150	4146		2;3		10
FLEQQNKVLETK	GlyGly (K);Deamidation (NQ)	1590.8253	0.82533668	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P12035|K2C3_HUMAN;CON__P12035;CON__Q8VED5	no	no	0	1	1	0	1				1						28.637	28.637	3	1.5828E-05	6500	20190902_JH_EV_Ubi_2	117.86	55.698	0	0	0	0	0	0	0	0	0	0		+	1401	3	1239	3946	4151	4151	2	2;3		1
FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK	Oxidation (M)	3772.4337	0.43373763	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	1	0			1		1			1	1	44.649	44.649	3	3.3302E-68	13460	20190902_JH_WT_Ubi_2	186.42	186.07	16317000	0	0	3877100	0	674890	0	0	5327600	6437300			1402	444	1240	3947;3948;3949;3950	4152;4153;4154;4155	4154			244	4
FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK	Unmodified	3756.4388	0.43882301	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0			1							46.447	46.447	3	8.4978E-10	12600	20190821_JH_WT_Ubi	96.783	89.74	3717000	0	0	3717000	0	0	0	0	0	0			1403	444	1240	3951	4156	4156				1
FLESTDSFNNELKR	GlyGly (K)	1812.8642	0.86424139	1746	sp|Q969G3-6|SMCE1_HUMAN;sp|Q969G3-5|SMCE1_HUMAN;sp|Q969G3-3|SMCE1_HUMAN;sp|Q969G3-2|SMCE1_HUMAN;sp|Q969G3-4|SMCE1_HUMAN;sp|Q969G3|SMCE1_HUMAN	yes	no	0	0	1	0	1		1				1	1			32.489	32.489	3	7.7067E-08	8280	20190902_JH_MUT_Ubi_2	145.52	95.365	7909300	0	0	0	0	0	4855700	3053600	0	0			1404	1746	1241	3952;3953;3954	4157;4158;4159	4158		1735		3
FLEVQYLTGGLIEPDTPGR	Unmodified	2104.0841	0.084070566	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1					1	1	51.785	51.785	3	4.2063E-10	14608	20190821_JH_WT_Ubi	134.4	87.307	8409600	0	0	4505100	0	0	0	0	1366100	2538400			1405	1332	1242	3955;3956;3957	4160;4161;4162	4160				3
FLHNPDAAQGFVGCALSSTIQR	Unmodified	2388.1645	0.16446293	1226	sp|Q13228-2|SBP1_HUMAN;sp|Q13228-3|SBP1_HUMAN;sp|Q13228|SBP1_HUMAN;sp|Q13228-4|SBP1_HUMAN	yes	no	0	0	0	0	0						1				40.735	40.735	3	0.034481	11484	20190902_JH_MUT_Ubi_2	35.875	5.7811	1779700	0	0	0	0	0	1779700	0	0	0			1406	1226	1243	3958	4163	4163				1
FLIIPLHSLMPTVNQTQVFK	Unmodified	2325.2919	0.29189527	1940	sp|Q9H2U1-3|DHX36_HUMAN;sp|Q9H2U1|DHX36_HUMAN	yes	no	0	0	0	0	0			1							50.769	50.769	3	2.6631E-09	14261	20190821_JH_WT_Ubi	125.41	80.81	5610900	0	0	5610900	0	0	0	0	0	0			1407	1940	1244	3959	4164	4164				1
FLKENCRPDGR	Deamidation (NQ)	1391.6616	0.66158259	1758	sp|Q96B26|EXOS8_HUMAN	yes	yes	0	1	0	0	2		1								25.492	25.492	2	0.036449	4332	20190821_JH_MUT_Ubi	50.04	13.347	0	0	0	0	0	0	0	0	0	0			1408	1758	1245	3960	4165	4165	569			1
FLKSGDAAIVDMVPGK	Oxidation (M);GlyGly (K)	1776.908	0.90802046	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	1	1	1						1				32.493	32.493	3	0.0062042	8184	20190902_JH_MUT_Ubi_2	81.619	29.372	1293900	0	0	0	0	0	1293900	0	0	0			1409	1096	1246	3961	4166	4166		1096;1097	676	0
FLLVYLHGDDHQDSDEFCR	Unmodified	2365.0433	0.043344738	1766	sp|Q96CS3|FAF2_HUMAN	yes	yes	0	0	0	0	0			1							39.516	39.516	3	2.7238E-05	9727	20190821_JH_WT_Ubi	106.36	67.018	3100700	0	0	3100700	0	0	0	0	0	0			1410	1766	1247	3962	4167	4167				1
FLQEFYQDDELGKK	GlyGly (K)	1872.8894	0.8893935	762	sp|P33993-2|MCM7_HUMAN;sp|P33993|MCM7_HUMAN	yes	no	0	0	1	0	1						1				35.747	35.747	3	0.012424	9586	20190902_JH_MUT_Ubi_2	73.219	29.836	2290500	0	0	0	0	0	2290500	0	0	0			1411	762	1248	3963	4168	4168		745		1
FLQEHGSDSFLAEHK	Unmodified	1743.8216	0.82164829	1125	sp|Q00688|FKBP3_HUMAN	yes	yes	0	0	0	0	0								1		28.251	28.251	3	0.00061148	7733	20190902_JH_WT_Ubi_2	100.18	44.407	4936100	0	0	0	0	0	0	0	4936100	0			1412	1125	1249	3964	4169	4169				1
FLQENASGR	2 Deamidation (NQ)	1022.4669	0.46688876	1456	sp|Q5XPI4|RN123_HUMAN;sp|Q5XPI4-2|RN123_HUMAN	yes	no	0	2	0	0	0					1					26.982	26.982	2	0.035509	5967	20190902_JH_EV_Ubi_3	53.493	6.8301	0	0	0	0	0	0	0	0	0	0			1413	1456	1250	3965	4170	4170	462;1077			1
FLQVNGIIVSRGMKDMELDASSMEK	2 Oxidation (M);2 Deamidation (NQ)	2831.3391	0.33911733	1347	sp|Q15413-3|RYR3_HUMAN;sp|Q15413-2|RYR3_HUMAN;sp|Q15413|RYR3_HUMAN	yes	no	0	2	0	2	2			1							54	54	3	0.029103	15439	20190821_JH_WT_Ubi	41.76	15.556	0	0	0	0	0	0	0	0	0	0			1414	1347	1251	3966	4171	4171	427;1045		847;848	1
FLRDGYRTSLEDPNR	Deamidation (NQ)	1838.8911	0.89112484	1743	sp|Q93100-4|KPBB_HUMAN;sp|Q93100-2|KPBB_HUMAN;sp|Q93100-3|KPBB_HUMAN;sp|Q93100|KPBB_HUMAN	yes	no	0	1	0	0	2		1								35.078	35.078	3	0.036342	7779	20190821_JH_MUT_Ubi	65.043	16.903	717290	0	717290	0	0	0	0	0	0	0			1415	1743	1252	3967	4172	4172	566			1
FLSHSLVELLNQISPTFK	Unmodified	2072.1306	0.13062683	272	sp|O75153|CLU_HUMAN	yes	yes	0	0	0	0	0		1	1					1		53.159	53.159	3	0.00023264	15059	20190821_JH_WT_Ubi	93.181	63.841	13155000	0	1735300	9405300	0	0	0	0	2014300	0			1416	272	1253	3968;3969;3970	4173;4174;4175	4174				3
FLSNDTVQLNVK	2 Deamidation (NQ)	1378.698	0.6980109	627	sp|P20273-2|CD22_HUMAN;sp|P20273-5|CD22_HUMAN;sp|P20273-4|CD22_HUMAN;sp|P20273-3|CD22_HUMAN;sp|P20273|CD22_HUMAN	yes	no	0	2	0	0	0			1							42.627	42.627	2	0.037181	10984	20190821_JH_WT_Ubi	54.722	11.696	1844600	0	0	1844600	0	0	0	0	0	0			1417	627	1254	3971	4176	4176	223			0
FLSNGHVTIPGQQDK	Deamidation (NQ)	1640.8158	0.81583463	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	1	0	0	0				1						33.151	33.151	3	0.007181	7941	20190902_JH_EV_Ubi_2	80.905	28.561	1314500	0	0	0	1314500	0	0	0	0	0			1418	776	1255	3972	4177	4177	275			1
FLSQPFQVAEVFTGHMGK	Oxidation (M)	2037.9982	0.99823245	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	1	0	1	1	1	1	1		1	1	1	44.404	44.404	3	5.8397E-11	11209	20190902_JH_EV_Ubi_2	137.91	89.517	192960000	37431000	14398000	55256000	13428000	13654000	0	5712300	33141000	19934000			1419	433	1256	3973;3974;3975;3976;3977;3978;3979;3980	4178;4179;4180;4181;4182;4183;4184;4185;4186;4187;4188	4180			227	11
FLSQPFQVAEVFTGHMGK	Unmodified	2022.0033	0.003317824	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1	1		47.213	47.213	3	5.0705E-11	12373	20190821_JH_MUT_Ubi	137.32	69.391	71866000	12699000	7744500	32812000	2274700	0	4368700	3739900	8227800	0			1420	433	1256	3981;3982;3983;3984;3985;3986;3987	4189;4190;4191;4192;4193;4194;4195	4191				7
FLSQPFQVAEVFTGHMGK	Oxidation (M);Deamidation (NQ)	2038.9822	0.98224803	433	sp|P06576|ATPB_HUMAN	yes	yes	0	1	0	1	0				1	1	1		1	1	45.597	45.597	3	0.00064545	11492	20190902_JH_EV_Ubi_2	90.259	50.312	14601000	0	0	0	1241600	2048800	2352200	0	2752300	6206400			1421	433	1256	3988;3989;3990;3991;3992	4196;4197;4198;4199;4200	4196	829;830		227	5
FLSYKFSNSGSR	Deamidation (NQ)	1392.6674	0.66737948	554	sp|P14555|PA2GA_HUMAN	yes	yes	0	1	0	0	1	1		1	1	1				1	25.178	25.178	3	0.012557	4912	20190821_JH_WT_Ubi	100.69	61.507	63593000	7121500	0	12724000	12306000	8903600	0	0	0	22538000			1422	554	1257	3993;3994;3995;3996;3997	4201;4202;4203;4204;4205	4204	208			5
FLTAFLVQISAHSDQNK	Unmodified	1917.9949	0.99486163	1180	sp|Q07960|RHG01_HUMAN	yes	yes	0	0	0	0	0		1	1			1				44.596	44.596	3	4.2219E-06	11880	20190821_JH_WT_Ubi	120.7	71.964	22097000	0	4767200	15895000	0	0	1434300	0	0	0			1423	1180	1258	3998;3999;4000	4206;4207;4208	4208				3
FLTLPPVLHLQLMR	Oxidation (M)	1692.9749	0.97491823	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	0	1	0			1							47.646	47.646	3	0.025916	13069	20190821_JH_WT_Ubi	56.936	22.252	12875000	0	0	12875000	0	0	0	0	0	0			1424	1739	1259	4001	4209	4209			986	1
FLTLPPVLHLQLMR	Unmodified	1676.98	0.98000361	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	0	0	0			1							50.078	50.078	3	0.027403	14019	20190821_JH_WT_Ubi	51.218	23.569	4658200	0	0	4658200	0	0	0	0	0	0			1425	1739	1259	4002	4210	4210				1
FLTPCYHPNVDTQGNICLDILKEK	GlyGly (K)	2988.4474	0.44736265	139	sp|O00762-2|UBE2C_HUMAN;sp|O00762-3|UBE2C_HUMAN;sp|O00762|UBE2C_HUMAN	yes	no	0	0	1	0	1		1				1				41.12	41.12	4	8.6392E-05	11469	20190902_JH_MUT_Ubi_2	82.406	51.822	15964000	0	8294000	0	0	0	7670000	0	0	0			1426	139	1260	4003;4004	4211;4212	4212		119		2
FMCAQLPNPVLDSISIIDTPGILSGEKQR	GlyGly (K)	3312.6846	0.68463281	1956	sp|Q9H4M9|EHD1_HUMAN	yes	yes	0	0	1	0	1		1								53.825	53.825	3	0.017744	14317	20190821_JH_MUT_Ubi	40.15	18.479	1041300	0	1041300	0	0	0	0	0	0	0			1427	1956	1261	4005	4213	4213		1889		1
FMCAQLPNPVLDSISIIDTPGILSGEKQR	Oxidation (M);GlyGly (K)	3328.6795	0.67954743	1956	sp|Q9H4M9|EHD1_HUMAN	yes	yes	0	0	1	1	1			1			1			1	52.882	52.882	3	1.1015E-10	15321	20190902_JH_WT_Ubi_3	104.26	71.185	4739000	0	0	3061500	0	0	471120	0	0	1206400			1428	1956	1261	4006;4007;4008	4214;4215;4216	4216		1889	1064	3
FMCAQLPNQVLESISIIDTPGILSGAK	Oxidation (M)	2917.4929	0.49291586	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	0	1	0									1	55.273	55.273	3	0.00047029	15801	20190902_JH_WT_Ubi_3	68.024	41.814	1078500	0	0	0	0	0	0	0	0	1078500			1429	2074	1262	4009	4217	4217			1107	1
FMCAQLPNQVLESISIIDTPGILSGAKQR	Oxidation (M);GlyGly (K)	3315.6955	0.69553184	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	1	1	1						1			1	52.572	52.572	3	9.3386E-05	14792	20190902_JH_MUT_Ubi_2	74.63	56.332	1679400	0	0	0	0	0	306450	0	0	1373000			1430	2074	1263	4010;4011	4218;4219	4218		1957	1107	2
FMLQAKVSELKNNMK	GlyGly (K);3 Deamidation (NQ)	1896.9325	0.93252065	1185	sp|Q08378|GOGA3_HUMAN;sp|Q08378-2|GOGA3_HUMAN	yes	no	0	3	1	0	2								1		52.061	52.061	3	0.017311	15525	20190902_JH_WT_Ubi_2	56.414	26.238	2104900	0	0	0	0	0	0	0	2104900	0			1431	1185	1264	4012	4220	4220	388;389;1006	1181		0
FMPAGLIAGASLLMVAK	2 Oxidation (M)	1720.9256	0.92558477	2084	sp|Q9P0S9|TM14C_HUMAN	yes	yes	0	0	0	2	0			1							49.738	49.738	3	0.0037007	13870	20190821_JH_WT_Ubi	87.863	55.296	0	0	0	0	0	0	0	0	0	0			1432	2084	1265	4013	4221	4221			1110;1111	1
FMVHPAISSINLTTALGSLANIAR	Oxidation (M)	2512.3472	0.34717832	1722	sp|Q92797-2|SYMPK_HUMAN;sp|Q92797|SYMPK_HUMAN	yes	no	0	0	0	1	0		1	1							52.282	52.282	3	0.0014173	14735	20190821_JH_WT_Ubi	65.454	26.217	12956000	0	4028000	8928000	0	0	0	0	0	0			1433	1722	1266	4014;4015	4222;4223	4223			982	2
FMYDPQTDQNIKINDR	Oxidation (M);GlyGly (K)	2126.9691	0.96911716	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	1	1	1		1								31.751	31.751	3	0.0056515	6508	20190821_JH_MUT_Ubi	74.428	48.989	1758500	0	1758500	0	0	0	0	0	0	0			1434	1739	1267	4016	4224	4224		1731	987	1
FNAHGDANTIVCNSK	Unmodified	1646.7471	0.74710314	486	sp|P09382|LEG1_HUMAN	yes	yes	0	0	0	0	0								1		24.029	24.029	3	0.0017071	6312	20190902_JH_WT_Ubi_2	86.497	55.077	14303000	0	0	0	0	0	0	0	14303000	0			1435	486	1268	4017	4225	4225				1
FNAHGDANTIVCNSK	Deamidation (NQ)	1647.7311	0.73111872	486	sp|P09382|LEG1_HUMAN	yes	yes	0	1	0	0	0									1	24.592	24.592	3	0.033752	6376	20190902_JH_WT_Ubi_3	61.097	24.813	6182400	0	0	0	0	0	0	0	0	6182400			1436	486	1268	4018	4226	4226	182			1
FNDEHIPESPYLVPVIAPSDDAR	Unmodified	2580.2496	0.24963234	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0			1		1			1	1	45.034	45.034	3	0.0011173	13615	20190902_JH_WT_Ubi_2	68.401	28.222	22996000	0	0	8270900	0	474320	0	0	8098700	6152500			1437	282	1269	4019;4020;4021;4022	4227;4228;4229;4230	4229				4
FNEEHIPDSPFVVPVASPSGDAR	Unmodified	2466.1816	0.18155278	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1		1		1			1	1	42.76	42.76	3	0.00067269	11135	20190821_JH_WT_Ubi	71.946	30.534	48061000	3344100	0	16403000	0	1695300	0	0	13610000	13009000			1438	637	1270	4023;4024;4025;4026;4027	4231;4232;4233;4234;4235	4233				5
FNFSGSKVQTPEVDVK	GlyGly (K)	1894.9425	0.94249171	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1		33.793	33.793	3	7.9927E-14	8662	20190902_JH_MUT_Ubi_2	155.09	104.31	49634000	3643700	8054400	6322700	0	1643400	10460000	12384000	7126500	0			1439	1190	1271	4028;4029;4030;4031;4032;4033;4034	4236;4237;4238;4239;4240;4241;4242	4239		1192		7
FNGGGHINHSIFWTNLSPNGGGEPK	Unmodified	2636.252	0.25203238	405	sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-4|SODM_HUMAN	yes	no	0	0	0	0	0			1							35.493	35.493	3	0.0017813	8180	20190821_JH_WT_Ubi	61.141	20.331	3265600	0	0	3265600	0	0	0	0	0	0			1440	405	1272	4035	4243	4243				1
FNHFSLTLNTNHGHILVDYSK	Unmodified	2456.2237	0.22369236	437	sp|P06744|G6PI_HUMAN;sp|P06744-2|G6PI_HUMAN	yes	no	0	0	0	0	0			1							35.736	35.736	5	0.022713	8244	20190821_JH_WT_Ubi	44.029	24.63	8231200	0	0	8231200	0	0	0	0	0	0			1441	437	1273	4036	4244	4244				1
FNLLAHLADDLGHVVPNSR	Unmodified	2087.0912	0.091221629	1621	sp|Q8N5N7-2|RM50_HUMAN;sp|Q8N5N7|RM50_HUMAN	yes	no	0	0	0	0	0			1							47.257	47.257	3	6.6844E-05	12917	20190821_JH_WT_Ubi	98.882	62.244	4725800	0	0	4725800	0	0	0	0	0	0			1442	1621	1274	4037	4245	4245				1
FNNWGGSLSLGHPFGATGCR	Unmodified	2133.9803	0.98029097	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	39.51	39.51	3	9.7991E-06	11775	20190902_JH_WT_Ubi_2	107.82	66.343	76830000	0	8708800	33309000	0	0	2958900	7531600	10355000	13967000			1443	975	1275	4038;4039;4040;4041;4042;4043	4246;4247;4248;4249;4250;4251	4250				6
FNNWGGSLSLGHPFGATGCR	Deamidation (NQ)	2134.9643	0.96430656	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	1	0	0	0								1	1	42.42	42.42	3	0.00016911	12240	20190902_JH_WT_Ubi_3	93.342	44.443	9247500	0	0	0	0	0	0	0	5872800	3374700			1444	975	1275	4044;4045	4252;4253	4253	322;323			2
FNPNAIGVPQPYLNK	3 Deamidation (NQ)	1673.8301	0.83008771	279	sp|O75339|CILP1_HUMAN	yes	yes	0	3	0	0	0					1					33.32	33.32	3	0.031659	8069	20190902_JH_EV_Ubi_3	42.789	7.7118	1853000	0	0	0	0	1853000	0	0	0	0			1445	279	1276	4046	4254	4254	97;98;99			1
FNVLHWHIVDDQSFPYQSITFPELSNK	Unmodified	3260.5931	0.59309891	449	sp|P07686|HEXB_HUMAN	yes	yes	0	0	0	0	0		1	1					1		50.849	50.849	4	6.1823E-05	15121	20190902_JH_WT_Ubi_2	76.668	54.827	22441000	0	2373000	12736000	0	0	0	0	7332500	0			1446	449	1277	4047;4048;4049	4255;4256;4257	4257				3
FPEELTQTFMSCNLITGMFQRLDK	Oxidation (M);GlyGly (K)	3035.4191	0.41909899	691	sp|P26641|EF1G_HUMAN;sp|P26641-2|EF1G_HUMAN	yes	no	0	0	1	1	1								1		24.099	24.099	3	0.015253	6301	20190902_JH_WT_Ubi_2	49.592	19.568	1735700	0	0	0	0	0	0	0	1735700	0			1447	691	1278	4050	4258	4258		678	432	1
FPHGIPFLADYVHSLGLK	Unmodified	2010.0727	0.072718018	595	sp|P17050|NAGAB_HUMAN	yes	yes	0	0	0	0	0			1							48.508	48.508	4	0.033005	13426	20190821_JH_WT_Ubi	35.711	5.1749	1044200	0	0	1044200	0	0	0	0	0	0			1448	595	1279	4051	4259	4259				1
FPQEQNKMKPEFNVR	4 Deamidation (NQ)	1894.8771	0.87711426	83	sp|P0C7I0|U17L8_HUMAN;sp|A6NCW7|U17L4_HUMAN	yes	no	0	4	0	0	2								1		31.162	31.162	2	0.036223	8768	20190902_JH_WT_Ubi_2	44.847	6.9075	0	0	0	0	0	0	0	0	0	0			1449	83	1280	4052	4260	4260	28;29			1
FPSNSPVTHVAANTQPGLATPAVITVTANR	Unmodified	3030.5887	0.58868223	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN	yes	no	0	0	0	0	0		1								40.912	40.912	3	0.031295	9845	20190821_JH_MUT_Ubi	30.855	8.4949	1005700	0	1005700	0	0	0	0	0	0	0			1450	910	1281	4053	4261	4261				1
FQEHLQLQNLGINPANIGFSTLTMESDK	Oxidation (M)	3160.5499	0.54991346	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	1	0			1					1		48.983	48.983	3	6.8298E-27	13560	20190821_JH_WT_Ubi	146.8	114.47	6961800	0	0	5313400	0	0	0	0	1648400	0			1451	1123	1282	4054;4055	4262;4263	4262			694	2
FQEHLQLQNLGINPANIGFSTLTMESDK	Unmodified	3144.555	0.55499884	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1							50.26	50.26	3	1.1527E-10	14110	20190821_JH_WT_Ubi	101.58	77.885	2896800	0	0	2896800	0	0	0	0	0	0			1452	1123	1282	4056	4264;4265	4265				2
FQGQTCEMCQTCLGVCAEHK	Oxidation (M)	2458.9796	0.97964032	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	0	0	1	0			1					1	1	26.972	26.972	3	9.3827E-14	5402	20190821_JH_WT_Ubi	141.18	124.7	10595000	0	0	2752900	0	0	0	0	4676400	3165900			1453	429	1283	4057;4058;4059	4266;4267;4268;4269	4267			219	4
FQGQTCEMCQTCLGVCAEHK	Unmodified	2442.9847	0.9847257	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	0	0	0	0			1							30.257	30.257	3	8.6222E-19	6373	20190821_JH_WT_Ubi	156.08	117.16	3086100	0	0	3086100	0	0	0	0	0	0			1454	429	1283	4060	4270	4270				1
FQHVGTSVFLSVTGEQYGSPIR	Unmodified	2408.2125	0.21245898	1992	sp|Q9HCN8|SDF2L_HUMAN	yes	yes	0	0	0	0	0			1							41.904	41.904	3	0.0061081	10735	20190821_JH_WT_Ubi	56.684	27.793	3628400	0	0	3628400	0	0	0	0	0	0			1455	1992	1284	4061	4271	4271				1
FQLLVQQVALGTMMHCQTLK	2 Oxidation (M)	2377.1956	0.1956284	846	sp|P43897-3|EFTS_HUMAN;sp|P43897-4|EFTS_HUMAN;sp|P43897|EFTS_HUMAN;sp|P43897-2|EFTS_HUMAN	yes	no	0	0	0	2	0			1				1	1	1	40.456	40.456	3	0.0020595	11615	20190902_JH_WT_Ubi_3	70.335	28.781	8868200	0	0	0	0	0	0	1997400	2844300	4026400			1456	846	1285	4062;4063;4064;4065	4272;4273;4274;4275	4275			538;539	4
FQLLVQQVALGTMMHCQTLK	Unmodified	2345.2058	0.20579916	846	sp|P43897-3|EFTS_HUMAN;sp|P43897-4|EFTS_HUMAN;sp|P43897|EFTS_HUMAN;sp|P43897-2|EFTS_HUMAN	yes	no	0	0	0	0	0			1							46.904	46.904	3	0.0097949	12818	20190821_JH_WT_Ubi	54.805	3.1098	7194600	0	0	7194600	0	0	0	0	0	0			1457	846	1285	4066	4276	4276				1
FQPGETLTEILETPATSEQEAEHQR	Unmodified	2840.3464	0.34644586	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1						1	44.807	44.807	3	0.00029172	13075	20190902_JH_WT_Ubi_3	73.459	40.008	14856000	0	0	10745000	0	0	0	0	0	4110800			1458	863	1286	4067;4068	4277;4278	4278				2
FQQVPTDALANKLFGAPEPSTIAR	GlyGly (K)	2684.3922	0.39221426	1488	sp|Q6PKG0|LARP1_HUMAN;sp|Q6PKG0-3|LARP1_HUMAN	yes	no	0	0	1	0	1			1						1	44.848	44.848	3	0.0032309	12046	20190821_JH_WT_Ubi	60.991	28.285	5409400	0	0	3465400	0	0	0	0	0	1944000			1459	1488	1287	4069;4070	4279;4280	4279		1498		2
FQSSAVMALQEACEAYLVGLFEDTNLCAIHAK	Oxidation (M)	3601.6891	0.68912584	1101	sp|P68431|H31_HUMAN	yes	yes	0	0	0	1	0		1								55.299	55.299	3	1.0318E-08	14766	20190821_JH_MUT_Ubi	97.059	77.234	514670	0	514670	0	0	0	0	0	0	0			1460	1101	1288	4071	4281	4281			686	1
FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK	Oxidation (M)	3528.6905	0.69050605	1514	sp|Q71DI3|H32_HUMAN	yes	yes	0	0	0	1	0								1		56.354	56.354	3	9.2394E-22	16561	20190902_JH_WT_Ubi_2	123.62	100.38	1264200	0	0	0	0	0	0	0	1264200	0			1461	1514	1289	4072	4282	4282			911	1
FQSSHHPTDITSLDQYVER	Unmodified	2259.0556	0.055623984	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0			1					1	1	33.267	33.267	3;4	1.1054E-13	9581	20190902_JH_WT_Ubi_2	142.97	96.432	32380000	0	0	12307000	0	0	0	0	7394700	12678000			1462	557	1290	4073;4074;4075	4283;4284;4285	4284				3
FQSVPAQPGQTSPLLQYFGILLDQGQLNK	Unmodified	3186.6713	0.67134923	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	56.876	56.876	3	5.1913E-16	16196	20190821_JH_WT_Ubi	112.75	82.159	24977000	0	5244300	7085200	0	0	0	2797900	8781700	1067700			1463	1123	1291	4076;4077;4078;4079;4080	4286;4287;4288;4289;4290	4288				5
FQTEIQTVNKQFPCEPFK	GlyGly (K)	2354.1365	0.13651684	560	sp|P14868|SYDC_HUMAN;sp|P14868-2|SYDC_HUMAN	yes	no	0	0	1	0	1		1				1	1	1		37.848	37.848	3	9.371E-05	9510	20190902_JH_MUT_Ubi_3	104.26	66.406	8781300	0	1955300	0	0	0	1532400	2700400	2593200	0			1464	560	1292	4081;4082;4083;4084	4291;4292;4293;4294	4293		552		4
FSAYIKNSNPALNDNLEK	GlyGly (K)	2151.0596	0.059646729	121	sp|O00299|CLIC1_HUMAN	yes	yes	0	0	1	0	1		1								32.897	32.897	3	9.4324E-05	6902	20190821_JH_MUT_Ubi	104.21	69.811	2779300	0	2779300	0	0	0	0	0	0	0			1465	121	1293	4085	4295	4295		108		1
FSDHVALLSVFQAWDDAR	Unmodified	2076.0065	0.0064889465	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	0								1		51.929	51.929	3	0.00027415	15496	20190902_JH_WT_Ubi_2	91.14	46.333	1385900	0	0	0	0	0	0	0	1385900	0			1466	1182	1294	4086	4296	4296				1
FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAK	GlyGly (K);Deamidation (NQ)	3778.7387	0.73871311	943	sp|P52948-4|NUP98_HUMAN;sp|P52948-3|NUP98_HUMAN;sp|P52948-6|NUP98_HUMAN;sp|P52948-2|NUP98_HUMAN;sp|P52948-5|NUP98_HUMAN;sp|P52948|NUP98_HUMAN	yes	no	0	1	1	0	1			1							42.303	42.303	4	0.0046277	10907	20190821_JH_WT_Ubi	44.365	24.729	2510000	0	0	2510000	0	0	0	0	0	0			1467	943	1295	4087	4297	4297	317	904		1
FSFSGNTLVSSSADPEGHFETPIWIER	Unmodified	3009.4145	0.41446584	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	0			1					1		48.607	48.607	3	0.0003407	14652	20190902_JH_WT_Ubi_2	69.07	43.558	10340000	0	0	6629500	0	0	0	0	3710500	0			1468	1304	1296	4088;4089	4298;4299	4299				2
FSGNLLVSLLGTWSDTSSGGPAR	Unmodified	2321.1652	0.16517443	1027	sp|P61619|S61A1_HUMAN;sp|P61619-3|S61A1_HUMAN	yes	no	0	0	0	0	0	1	1								55.927	55.927	3	2.8722E-09	14911	20190821_JH_MUT_Ubi	119.34	79.101	2992900	1188300	1804600	0	0	0	0	0	0	0			1469	1027	1297	4090;4091	4300;4301	4301				2
FSGWYDADLSPAGHEEAK	Unmodified	1978.8697	0.86972069	612	sp|P18669|PGAM1_HUMAN	yes	yes	0	0	0	0	0		1	1				1	1	1	36.42	36.42	3	2.0363E-26	10239	20190902_JH_WT_Ubi_3	171.15	126.64	53645000	0	2404500	20257000	0	0	0	2062400	14814000	14108000			1470	612	1298	4092;4093;4094;4095;4096	4302;4303;4304;4305;4306	4306				5
FSHEEIAMATVTALR	Unmodified	1674.8399	0.83994089	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	0	0			1			1		1		38	38	3	0.00048222	9161	20190821_JH_WT_Ubi	102.9	43.719	21333000	0	0	12426000	0	0	2440900	0	6465500	0			1471	400	1299	4097;4098;4099	4307;4308;4309	4308				3
FSHEEIAMATVTALR	Oxidation (M)	1690.8349	0.83485551	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	1	0			1					1		34.171	34.171	3	0.00016299	9865	20190902_JH_WT_Ubi_2	110.25	61.785	20875000	0	0	7960800	0	0	0	0	12915000	0			1472	400	1299	4100;4101	4310;4311	4311			190	2
FSISPDEDSSSYSSNSDFNYSYPTKQAALK	GlyGly (K)	3448.5219	0.52190362	1809	sp|Q96QD8|S38A2_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1	1	1	39.476	39.476	3	2.7275E-32	10880	20190902_JH_MUT_Ubi_2	155.47	138.16	226320000	37135000	43305000	0	18968000	13799000	44613000	43235000	13056000	12206000			1473	1809	1300	4102;4103;4104;4105;4106;4107;4108;4109	4312;4313;4314;4315;4316;4317;4318;4319;4320	4317		1773;1774		9
FSISPDEDSSSYSSNSDFNYSYPTKQAALK	GlyGly (K);Deamidation (NQ)	3449.5059	0.5059192	1809	sp|Q96QD8|S38A2_HUMAN	yes	yes	0	1	1	0	1							1			39.771	39.771	3	5.6684E-10	10271	20190902_JH_MUT_Ubi_3	100.44	84.925	6048300	0	0	0	0	0	0	6048300	0	0			1474	1809	1300	4110	4321	4321	1194	1773;1774		1
FSLMNENRELK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1510.7086	0.70859237	1445	sp|Q5T9S5-2|CCD18_HUMAN;sp|Q5T9S5|CCD18_HUMAN	yes	no	0	1	1	1	1								1		34.714	34.714	2	0.024375	10039	20190902_JH_WT_Ubi_2	66.692	11.71	0	0	0	0	0	0	0	0	0	0			1475	1445	1301	4111	4322	4322	458	1460	884	1
FSMPGFKAEGPEVDVNLPK	Oxidation (M);GlyGly (K)	2191.062	0.061954915	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	1	1	1	1		1		1	1			37.481	37.481	3	0.00058618	9418	20190902_JH_MUT_Ubi_3	85.146	24.672	13240000	2551900	2547800	0	1814300	0	2874400	3451800	0	0			1476	1190	1302	4112;4113;4114;4115;4116	4323;4324;4325;4326;4327	4327		1193	743	5
FSMPGFKGEGPDVDVNLPK	Oxidation (M);GlyGly (K)	2163.0307	0.030654786	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	1	1		1					1			36.767	36.767	3	0.0034586	8520	20190821_JH_MUT_Ubi	71.697	46.743	4404900	0	1510100	0	0	0	0	2894700	0	0			1477	1190	1303	4117;4118	4328;4329	4328		1194	744	2
FSMPSLKGEGPEVDVNLPK	GlyGly (K)	2157.0776	0.077604979	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								41.802	41.802	3	0.027005	10241	20190821_JH_MUT_Ubi	48.053	16.664	1357500	0	1357500	0	0	0	0	0	0	0			1478	1190	1304	4119	4330	4330		1195		1
FSMPSLKGEGPEVDVNLPK	Oxidation (M);GlyGly (K)	2173.0725	0.072519601	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	1	1						1	1			36.434	36.434	3	0.0028818	9835	20190902_JH_MUT_Ubi_2	72.819	39.506	3214000	0	0	0	0	0	1254100	1959900	0	0			1479	1190	1304	4120;4121	4331;4332	4331		1195	745	2
FSVCVLGDQQHCDEAK	Unmodified	1891.8193	0.8192818	1069	sp|P62906|RL10A_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	31.964	31.964	3	1.3429E-05	6972	20190821_JH_WT_Ubi	118.52	76.134	39016000	0	1700400	12265000	0	0	2057600	2160800	10914000	9918100			1480	1069	1305	4122;4123;4124;4125;4126;4127	4333;4334;4335;4336;4337;4338	4336				6
FSVICPAVLQQLNFHPCEDRPK	Unmodified	2654.3097	0.30974696	1916	sp|Q9C0K1-2|S39A8_HUMAN;sp|Q9C0K1-3|S39A8_HUMAN;sp|Q9C0K1|S39A8_HUMAN	yes	no	0	0	0	0	1			1							44.033	44.033	4	1.0785E-06	11633	20190821_JH_WT_Ubi	100.77	70.089	5587600	0	0	5587600	0	0	0	0	0	0			1481	1916	1306	4128	4339	4339				1
FSVSGLKAEGPDVAVDLPK	GlyGly (K)	2042.0684	0.068420501	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			40.108	40.108	3	0.00015168	10413	20190902_JH_MUT_Ubi_3	95.554	63.64	2172000	0	0	0	0	0	0	2172000	0	0			1482	1190	1307	4129	4340	4340		1196		1
FTANVGIQIVGDDLTVTNPK	Unmodified	2101.1055	0.10553429	483	sp|P09104|ENOG_HUMAN;sp|P09104-2|ENOG_HUMAN	yes	no	0	0	0	0	0			1							46.773	46.773	2	1.0483E-09	12730	20190821_JH_WT_Ubi	132.81	85.931	0	0	0	0	0	0	0	0	0	0			1483	483	1308	4130	4341	4341				1
FTASAGIQVVGDDLTVTNPK	Unmodified	2032.0477	0.047685059	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	42.7	42.7	3	7.2206E-121	11294	20190821_JH_EV_Ubi	257.37	187.49	200490000	43466000	32785000	49154000	7626300	4796100	21888000	9260700	15760000	15756000			1484	435	1309	4131;4132;4133;4134;4135;4136;4137;4138;4139	4342;4343;4344;4345;4346;4347;4348;4349;4350	4342				9
FTEDLVGSVVHVLSHR	Unmodified	1793.9424	0.94243213	1482	sp|Q6P9B6|TLDC1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	43.791	43.791	4	0.00028777	11550	20190821_JH_WT_Ubi	99.669	67.191	7118100	0	0	4317900	0	0	0	0	1218900	1581300			1485	1482	1310	4140;4141;4142	4351;4352;4353	4351				3
FTFYDGPPFATGLPHYGHILAGTIK	Unmodified	2719.3799	0.37985866	822	sp|P41252|SYIC_HUMAN	yes	yes	0	0	0	0	0						1	1	1	1	46.366	46.366	4	7.2361E-05	13452	20190902_JH_MUT_Ubi_2	80.362	63.331	40405000	0	0	0	0	0	5574200	4903000	22907000	7020500			1486	822	1311	4143;4144;4145;4146	4354;4355;4356;4357	4354				4
FTISDHPQPIDPLLK	Unmodified	1719.9196	0.91957142	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN	yes	no	0	0	0	0	0			1					1		40.008	40.008	3	0.0056886	9920	20190821_JH_WT_Ubi	72.705	32.229	9259400	0	0	5806500	0	0	0	0	3452900	0			1487	1557	1312	4147;4148	4358;4359	4358				2
FTITPPTAQVVGVLK	Unmodified	1569.913	0.91302948	941	sp|P52907|CAZA1_HUMAN	yes	yes	0	0	0	0	0	1				1					45.874	45.874	3	3.8391E-06	11549	20190902_JH_EV_Ubi_3	131.08	97.891	1565700	1153700	0	0	0	412060	0	0	0	0			1488	941	1313	4149;4150	4360;4361	4361				2
FTLPTDHALAEKTSHV	GlyGly (K)	1879.9428	0.94282606	1459	sp|Q658P3-2|STEA3_HUMAN;sp|Q658P3-3|STEA3_HUMAN;sp|Q658P3|STEA3_HUMAN	yes	no	0	0	1	0	1	1	1	1		1		1	1	1	32.378	32.378	3	0.0010887	9286	20190902_JH_WT_Ubi_2	92.265	59.519	44097000	2391300	3491200	16999000	0	1653700	0	3208100	6928100	9425900			1489	1459	1314	4151;4152;4153;4154;4155;4156;4157	4362;4363;4364;4365;4366;4367;4368;4369	4368		1472		8
FTPTVPHCSLATLIGLCLR	Unmodified	2155.1282	0.12820076	1958	sp|Q9H5X1|FA96A_HUMAN	yes	yes	0	0	0	0	0			1							48.345	48.345	3	0.0033753	13383	20190821_JH_WT_Ubi	66.939	30.746	3513600	0	0	3513600	0	0	0	0	0	0			1490	1958	1315	4158	4370	4370				1
FTVAMSPELIQQFLQATVSGLHETQPPSVR	Oxidation (M)	3326.6969	0.69691205	1804	sp|Q96P70|IPO9_HUMAN	yes	yes	0	0	0	1	0		1								55.094	55.094	3	4.5975E-16	14687	20190821_JH_MUT_Ubi	112.26	94.763	2683500	0	2683500	0	0	0	0	0	0	0			1491	1804	1316	4159	4371	4371			1006	1
FTVVVATQLPESTSLR	Unmodified	1746.9516	0.95159983	1252	sp|Q13564-3|ULA1_HUMAN;sp|Q13564-2|ULA1_HUMAN;sp|Q13564|ULA1_HUMAN;sp|Q13564-4|ULA1_HUMAN	yes	no	0	0	0	0	0			1							43.464	43.464	2	0.001211	11372	20190821_JH_WT_Ubi	92.935	31.581	2012700	0	0	2012700	0	0	0	0	0	0			1492	1252	1317	4160	4372	4372				1
FVAAVHYEQPTIQIELRQNTSQK	3 Deamidation (NQ)	2702.3552	0.35516005	495	sp|P09758|TACD2_HUMAN	yes	yes	0	3	0	0	1					1					47.714	47.714	3	0.031311	11914	20190902_JH_EV_Ubi_3	45.047	13.98	0	0	0	0	0	0	0	0	0	0			1493	495	1318	4161	4373	4373	190;845;846			1
FVCMLVTEDNVFEAPTIVKVFK	Deamidation (NQ)	2586.3114	0.31136966	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN	yes	no	0	1	0	0	1	1									46.363	46.363	3	0.0016593	12551	20190821_JH_EV_Ubi	75.743	13.64	921200	921200	0	0	0	0	0	0	0	0			1494	1260	1319	4162	4374	4374	405			1
FVDGLMIHSGDPVNYYVDTAVR	Oxidation (M)	2483.1791	0.17910994	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	0	1	0			1					1		43.502	43.502	3	3.9978E-22	11380	20190821_JH_WT_Ubi	152.86	119.5	17298000	0	0	9830300	0	0	0	0	7467600	0			1495	662	1320	4163;4164	4375;4376	4375			412	2
FVFHQEQVYCPDCAK	Unmodified	1926.8393	0.83928896	1258	sp|Q13642-1|FHL1_HUMAN;sp|Q13642-5|FHL1_HUMAN;sp|Q13642-4|FHL1_HUMAN	yes	no	0	0	0	0	0								1		32.117	32.117	3	0.033583	9111	20190902_JH_WT_Ubi_2	44.925	11.309	2203800	0	0	0	0	0	0	0	2203800	0			1496	1258	1321	4165	4377	4377				1
FVGHTKDVLSVAFSSDNR	GlyGly (K)	2092.0338	0.033766329	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	1	0	1			1				1	1		34.035	34.035	3;4	0.0016534	9884	20190902_JH_WT_Ubi_2	76.713	48.133	14543000	0	0	9241900	0	0	0	1325700	3975400	0			1497	1085	1322	4166;4167;4168	4378;4379;4380	4380		1078		3
FVHFIDAPSLALIMPIVQR	Unmodified	2166.2024	0.20235198	1717	sp|Q92616|GCN1_HUMAN	yes	yes	0	0	0	0	0		1	1							53.867	53.867	3	0.00010518	15354	20190821_JH_WT_Ubi	95.751	49.878	10463000	0	3442200	7020800	0	0	0	0	0	0			1498	1717	1323	4169;4170	4381;4382	4382				2
FVHFIDAPSLALIMPIVQR	Oxidation (M)	2182.1973	0.1972666	1717	sp|Q92616|GCN1_HUMAN	yes	yes	0	0	0	1	0			1			1	1	1	1	50.314	50.314	3	8.6336E-18	14712	20190902_JH_WT_Ubi_3	147.24	98.189	18329000	0	0	6001400	0	0	2087300	2188500	3080800	4970700			1499	1717	1323	4171;4172;4173;4174;4175	4383;4384;4385;4386;4387	4387			977	5
FVHKEGLMVGHQPSTLPPELPSGPPGLPSPPLPEEALGTR	Oxidation (M);GlyGly (K)	4295.2049	0.20487776	1686	sp|Q8TER5-4|ARH40_HUMAN;sp|Q8TER5-3|ARH40_HUMAN;sp|Q8TER5|ARH40_HUMAN	yes	no	0	0	1	1	1									1	42.75	42.75	5	0.00094158	12418	20190902_JH_WT_Ubi_3	44.215	30.267	1822100	0	0	0	0	0	0	0	0	1822100			1500	1686	1324	4176	4388	4388		1680	966	1
FVHLLDQSDQDFQEELDLMK	Unmodified	2449.1471	0.14714111	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1							48.529	48.529	3	0.0005906	13459	20190821_JH_WT_Ubi	76.573	38.949	1291000	0	0	1291000	0	0	0	0	0	0			1501	863	1325	4177	4389	4389				1
FVHTSVHGVGHSFVQSAFK	Unmodified	2070.0435	0.043543155	1777	sp|Q96G03-2|PGM2_HUMAN;sp|Q96G03|PGM2_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	28.75	28.75	3;4	3.4677E-05	6026	20190821_JH_WT_Ubi	103.39	82.655	285810000	0	0	94629000	0	0	15776000	0	91338000	84066000			1502	1777	1326	4178;4179;4180;4181;4182	4390;4391;4392;4393;4394	4392				5
FVLKNYGENPEAYNEELK	GlyGly (K)	2270.0855	0.085527129	1947	sp|Q9H3S7|PTN23_HUMAN	yes	yes	0	0	1	0	1						1		1	1	35.309	35.309	3	0.00014642	9333	20190902_JH_MUT_Ubi_2	99.915	45.103	7200000	0	0	0	0	0	2603700	0	2467500	2128700			1503	1947	1327	4183;4184;4185	4395;4396;4397	4395		1882		3
FVLSGANIMCPGLTSPGAK	Oxidation (M)	1934.9594	0.9594041	2161	sp|Q9ULC4-2|MCTS1_HUMAN;sp|Q9ULC4|MCTS1_HUMAN;sp|Q9ULC4-3|MCTS1_HUMAN	yes	no	0	0	0	1	0			1							41.065	41.065	2	3.3409E-08	10375	20190821_JH_WT_Ubi	124.2	55.52	2046400	0	0	2046400	0	0	0	0	0	0			1504	2161	1328	4186	4398	4398			1131	1
FVLSGNLHGGSVVASYPFDDSPEHK	Unmodified	2658.2714	0.27143042	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	0	0	0			1					1	1	38.728	38.728	3;4	0.0020913	9490	20190821_JH_WT_Ubi	91.378	48.179	19866000	0	0	0	0	0	0	0	9054300	10812000			1505	308	1329	4187;4188;4189	4399;4400;4401	4399				3
FVMLLPSSTHTIPFYPNPLHPR	Oxidation (M)	2579.3359	0.33588535	2225	sp|Q9Y3I1-3|FBX7_HUMAN;sp|Q9Y3I1-2|FBX7_HUMAN;sp|Q9Y3I1|FBX7_HUMAN	yes	no	0	0	0	1	0							1	1	1	43.571	43.571	4	5.2795E-05	12650	20190902_JH_WT_Ubi_3	85.563	63.188	6713500	0	0	0	0	0	0	1626400	2235100	2852000			1506	2225	1330	4190;4191;4192	4402;4403;4404	4404			1148	3
FVMLLPSSTHTIPFYPNPLHPR	Unmodified	2563.341	0.34097073	2225	sp|Q9Y3I1-3|FBX7_HUMAN;sp|Q9Y3I1-2|FBX7_HUMAN;sp|Q9Y3I1|FBX7_HUMAN	yes	no	0	0	0	0	0			1							46.157	46.157	4	0.0067687	12456	20190821_JH_WT_Ubi	53.188	25.812	5668000	0	0	5668000	0	0	0	0	0	0			1507	2225	1330	4193	4405	4405				1
FVNLFPEVKPTIQDVLR	Unmodified	2014.1251	0.12514752	325	sp|O94973-3|AP2A2_HUMAN;sp|O94973|AP2A2_HUMAN;sp|O94973-2|AP2A2_HUMAN	yes	no	0	0	0	0	1	1									48.694	48.694	3	0.026087	13246	20190821_JH_EV_Ubi	69.92	36.235	382110	382110	0	0	0	0	0	0	0	0			1508	325	1331	4194	4406	4406				1
FVPFAAVAAANCINIPLMR	Oxidation (M)	2090.0805	0.080522288	1890	sp|Q9BWM7|SFXN3_HUMAN;sp|Q9H9B4|SFXN1_HUMAN	yes	no	0	0	0	1	0	1		1	1				1		51.933	51.933	3	4.6513E-06	15530	20190902_JH_WT_Ubi_2	111.07	51.559	2833400	1387800	0	0	531030	0	0	0	914610	0			1509	1890	1332	4195;4196;4197;4198	4407;4408;4409;4410	4410			1034	4
FVSSSSSGAYGGGYGGVLTASDGLLAGNEK	Unmodified	2807.325	0.32498213	477	sp|P08727|K1C19_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1	1	1	44.838	44.838	3	1.2371E-85	11972	20190821_JH_WT_Ubi	208.99	156.08	422840000	15124000	36548000	129710000	0	7523200	44592000	33166000	61556000	94622000			1510	477	1333	4199;4200;4201;4202;4203;4204;4205;4206	4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423	4417				13
FVSSSSSGAYGGGYGGVLTASDGLLAGNEK	Deamidation (NQ)	2808.309	0.30899772	477	sp|P08727|K1C19_HUMAN	yes	yes	0	1	0	0	0			1			1	2	1		46.041	46.041	3	1.1493E-20	12573	20190821_JH_WT_Ubi	125.86	80.509	13775000	0	0	5260900	0	0	1471600	2339600	4702600	0			1511	477	1333	4207;4208;4209;4210;4211	4424;4425;4426;4427;4428	4427	180			5
FVSSSSSGAYGGGYGGVLTASDGLLAGNEKLTMQNLNDR	GlyGly (K)	4006.8967	0.89668709	477	sp|P08727|K1C19_HUMAN	yes	yes	0	0	1	0	1		1								46.431	46.431	3	0.0017569	11992	20190821_JH_MUT_Ubi	45.003	19.642	1998400	0	1998400	0	0	0	0	0	0	0			1512	477	1334	4212	4429	4429		479		1
FVSSSSSGAYGGGYGGVLTASDGLLAGNEKLTMQNLNDR	Oxidation (M);GlyGly (K);Deamidation (NQ)	4023.8756	0.87561729	477	sp|P08727|K1C19_HUMAN	yes	yes	0	1	1	1	1		1								44.562	44.562	3	1.9756E-06	11279	20190821_JH_MUT_Ubi	79.911	63.29	0	0	0	0	0	0	0	0	0	0			1513	477	1334	4213	4430	4430	180;181	479	281	1
FVSSSSSGGYGGGYGGVLTASDGLLAGNEK	Unmodified	2793.3093	0.30933207	7	CON__P08727	yes	yes	0	0	0	0	0		1			1	1		2		44.604	44.604	3	1.3402E-85	12813	20190902_JH_MUT_Ubi_2	208.16	166.2	150800000	0	50643000	0	0	10429000	32400000	0	57331000	0		+	1514	7	1335	4214;4215;4216;4217;4218	4431;4432;4433;4434;4435;4436	4434				6
FVSSSSSGGYGGGYGGVLTASDGLLAGNEK	Deamidation (NQ)	2794.2933	0.29334765	7	CON__P08727	yes	yes	0	1	0	0	0						1		1	1	45.519	45.519	3	1.1785E-10	13709	20190902_JH_WT_Ubi_2	103.57	68.917	9800700	0	0	0	0	0	1257800	0	3862800	4680000		+	1515	7	1335	4219;4220;4221	4437;4438;4439	4438	3			2
FVSSSSSGGYGGGYGGVLTASDGLLAGNEKLTMQNLNDR	Oxidation (M);GlyGly (K)	4008.876	0.87595164	7	CON__P08727	yes	yes	0	0	1	1	1		1								44.268	44.268	3	6.7103E-16	11194	20190821_JH_MUT_Ubi	99.907	79.354	1107300	0	1107300	0	0	0	0	0	0	0		+	1516	7	1336	4222	4440	4440		16	11	1
FVTAIWNLLVTTGQEVK	Unmodified	1918.0564	0.056399252	973	sp|P55060|XPO2_HUMAN;sp|P55060-3|XPO2_HUMAN	yes	no	0	0	0	0	0		1	1							55.113	55.113	3	3.3646E-19	14734	20190821_JH_MUT_Ubi	160.93	124.59	4894200	0	2464800	2429400	0	0	0	0	0	0			1517	973	1337	4223;4224	4441;4442	4441				2
FVTHVSDWGALATISTLEAVR	Unmodified	2272.1852	0.18518159	297	sp|O75629|CREG1_HUMAN	yes	yes	0	0	0	0	0			1							49.762	49.762	3	7.9425E-05	13883	20190821_JH_WT_Ubi	85.146	46.003	2144600	0	0	2144600	0	0	0	0	0	0			1518	297	1338	4225	4443	4443				1
FVTLSATNAKTNDVR	GlyGly (K)	1749.901	0.90096124	1819	sp|Q96S55-3|WRIP1_HUMAN;sp|Q96S55-2|WRIP1_HUMAN;sp|Q96S55|WRIP1_HUMAN	yes	no	0	0	1	0	1		1	1			1				28.099	28.099	3	0.0201	5250	20190821_JH_MUT_Ubi	60.55	31.059	6435400	0	1425500	3177900	0	0	1832000	0	0	0			1519	1819	1339	4226;4227;4228	4444;4445;4446	4444		1784		3
FWEVISDEHGIDPTGTYHGDSDLQLDR	Unmodified	3101.4003	0.40027234	448	sp|P07437|TBB5_HUMAN	yes	yes	0	0	0	0	0			1					1		43.233	43.233	4	0.010463	11254	20190821_JH_WT_Ubi	43.156	25.44	57773000	0	0	43574000	0	0	0	0	14199000	0			1520	448	1340	4229;4230	4447;4448	4447				2
FWEVISDEHGIDPTGTYHGDSDLQLER	Unmodified	3115.4159	0.4159224	1099	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN	yes	no	0	0	0	0	0			1						1	42.767	42.767	4	0.029531	11152	20190821_JH_WT_Ubi	30.749	10.124	39408000	0	0	30073000	0	0	0	0	0	9334900			1521	1099	1341	4231;4232	4449;4450	4449				2
FWEVISDEHGIDPTGTYHGDSDLQLER	Deamidation (NQ)	3116.3999	0.39993799	1099	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN	yes	no	0	1	0	0	0								1		43.061	43.061	3	0.0042452	12876	20190902_JH_WT_Ubi_2	79.455	39.949	0	0	0	0	0	0	0	0	0	0			1522	1099	1341	4233	4451	4451	976			1
FWTAMFSDKKYLTASQLVPPDNQDTR	Oxidation (M);2 Deamidation (NQ)	3076.4488	0.44880244	830	sp|P42356-2|PI4KA_HUMAN;sp|P42356|PI4KA_HUMAN	yes	no	0	2	0	1	2				1						51.414	51.414	3	0.011798	12284	20190902_JH_EV_Ubi_2	56.488	8.7744	0	0	0	0	0	0	0	0	0	0			1523	830	1342	4234	4452	4452	290;918;919		527	1
FWVLAAHPNLNLFAAGHDGGMIVFK	Oxidation (M);Deamidation (NQ)	2741.3788	0.3788128	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	1	0	1	0			1							48.116	48.116	3	4.8855E-06	13276	20190821_JH_WT_Ubi	113.73	68.688	0	0	0	0	0	0	0	0	0	0			1524	950	1343	4235	4453	4453	319		594	1
FWVLAAHPNLNLFAAGHDGGMIVFK	Oxidation (M)	2740.3948	0.39479721	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	0	1	0								1		48.167	48.167	4	0.0042383	14471	20190902_JH_WT_Ubi_2	53.454	33.379	7291500	0	0	0	0	0	0	0	7291500	0			1525	950	1343	4236	4454	4454			594	1
FYPEDVAEELIQDITQK	Unmodified	2036.9943	0.99425251	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	0	0	0								1		57.114	57.114	3	5.1105E-08	16669	20190902_JH_WT_Ubi_2	129.29	75.898	1590600	0	0	0	0	0	0	0	1590600	0			1526	568	1344	4237	4455	4455				1
FYPEDVSEELIQDITQR	Unmodified	2080.9953	0.99531514	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	0	0	0			1					1	1	54.24	54.24	3	0.0011274	16198	20190902_JH_WT_Ubi_2	83.37	57.222	8908000	0	0	4561200	0	0	0	0	2742200	1604600			1527	686	1345	4238;4239;4240	4456;4457;4458	4457				3
FYPESSYKSTPVPEVVQELPLTSPVDDFR	GlyGly (K)	3439.6824	0.68236743	1379	sp|Q16625-4|OCLN_HUMAN;sp|Q16625-3|OCLN_HUMAN;sp|Q16625|OCLN_HUMAN;sp|Q16625-5|OCLN_HUMAN;sp|Q16625-2|OCLN_HUMAN	yes	no	0	0	1	0	1		1					1			49.677	49.677	3	1.8649E-05	13193	20190821_JH_MUT_Ubi	83.435	55.344	2170200	0	1608400	0	0	0	0	561790	0	0			1528	1379	1346	4241;4242	4459;4460;4461	4459		1418		3
FYVFGVAMTMMIR	2 Oxidation (M)	1596.7503	0.75026295	1782	sp|Q96H78|S2544_HUMAN	yes	yes	0	0	0	2	0									1	35.948	35.948	2	0.029151	10174	20190902_JH_WT_Ubi_3	45.997	20.611	1706400	0	0	0	0	0	0	0	0	1706400			1529	1782	1347	4243	4462	4462			1003;1004	1
GAAAAATGQPGTAPAGTPGAPPLAGMAIVK	Oxidation (M)	2587.3428	0.34282122	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	0	1	0	1			1	1			1	1	37.542	37.542	3	3.1987E-16	11083	20190902_JH_WT_Ubi_2	115.58	81.664	24424000	3896000	0	0	3807000	4574700	0	0	5517900	6628500			1530	1227	1348	4244;4245;4246;4247;4248	4463;4464;4465;4466;4467	4466			770	5
GAAAAATGQPGTAPAGTPGAPPLAGMAIVK	Unmodified	2571.3479	0.3479066	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	0	0	0	1			1					1	42.249	42.249	3	1.3934E-05	12209	20190902_JH_WT_Ubi_3	81.38	49.991	4052300	1363500	0	0	1090400	0	0	0	0	1598400			1531	1227	1348	4249;4250;4251	4468;4469;4470	4470				3
GAAAIEAEDREEEEGEEEKEAPTGR	GlyGly (K)	2815.238	0.23801762	1709	sp|Q92508|PIEZ1_HUMAN	yes	yes	0	0	1	0	2	1	1	1	1	1	2	2		1	25.018	25.018	3;4	1.9396E-25	5700	20190902_JH_MUT_Ubi_2	156.08	121.93	281800000	42972000	26910000	12727000	32472000	40224000	62049000	37160000	0	27286000			1532	1709	1349	4252;4253;4254;4255;4256;4257;4258;4259;4260;4261	4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481	4477		1703		11
GAAAQGQTQTVAAQAQALAAQAAAAAHAAQAHR	Unmodified	3080.5612	0.5612387	1875	sp|Q9BTU6|P4K2A_HUMAN	yes	yes	0	0	0	0	0					1					41.756	41.756	4	0.0018445	10524	20190902_JH_EV_Ubi_3	48.213	25.807	803720	0	0	0	0	803720	0	0	0	0			1533	1875	1350	4262	4482	4482				1
GAAFLSITTIYAETGSGFVVPSASAK	Unmodified	2544.3112	0.31116997	1383	sp|Q16698-2|DECR_HUMAN;sp|Q16698|DECR_HUMAN	yes	no	0	0	0	0	0			1					1	1	53.638	53.638	3	2.5978E-26	15251	20190821_JH_WT_Ubi	149.8	119.95	16938000	0	0	9569400	0	0	0	0	2982200	4386800			1534	1383	1351	4263;4264;4265	4483;4484;4485	4483				3
GAAVDGGKLDVGNAEVK	GlyGly (K)	1712.8693	0.86932676	920	sp|P51572|BAP31_HUMAN;sp|P51572-2|BAP31_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	2	27.766	27.766	2;3	5.6626E-06	7306	20190902_JH_WT_Ubi_3	121.99	84.56	53257000	0	3214000	7858000	9385200	0	3680600	5344100	8290700	15485000			1535	920	1352	4266;4267;4268;4269;4270;4271;4272;4273;4274	4486;4487;4488;4489;4490;4491;4492;4493;4494	4493		885;886		9
GADDAADADTAIINAEGGQNNSEEKK	GlyGly (K)	2717.2012	0.20123818	1907	sp|Q9BY67-5|CADM1_HUMAN;sp|Q9BY67|CADM1_HUMAN;sp|Q9BY67-4|CADM1_HUMAN;sp|Q9BY67-3|CADM1_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			30.175	30.175	3	1.4943E-27	6955	20190902_JH_EV_Ubi_3	158.78	116.14	70913000	15055000	9177400	0	12636000	11617000	8436300	13991000	0	0			1536	1907	1353	4275;4276;4277;4278;4279;4280	4495;4496;4497;4498;4499;4500;4501	4497		1844;1845		7
GADDAADADTAIINAEGGQNNSEEKK	GlyGly (K);Deamidation (NQ)	2718.1853	0.18525377	1907	sp|Q9BY67-5|CADM1_HUMAN;sp|Q9BY67|CADM1_HUMAN;sp|Q9BY67-4|CADM1_HUMAN;sp|Q9BY67-3|CADM1_HUMAN	yes	no	0	1	1	0	1		1		2			2			30.903	30.903	3	3.5992E-12	6284	20190821_JH_MUT_Ubi	113.7	79.083	3850700	0	1241300	0	1288300	0	0	1321100	0	0			1537	1907	1353	4281;4282;4283;4284;4285	4502;4503;4504;4505;4506	4504	607;608;609;1236	1844;1845		5
GADFLVTEVENGGSLGSK	Deamidation (NQ)	1779.8527	0.85267365	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	1	0	0	0	1					1		2		43.759	43.759	2;3	2.4706E-96	13164	20190902_JH_WT_Ubi_2	251.63	181.53	15838000	5154200	0	0	0	0	855040	0	9828500	0			1538	556	1354	4286;4287;4288;4289	4507;4508;4509;4510	4510	209			3
GADFLVTEVENGGSLGSK	Unmodified	1778.8687	0.86865806	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0				1						43.184	43.184	2	2.4796E-34	10927	20190902_JH_EV_Ubi_2	193.06	138.8	3831500	0	0	0	3831500	0	0	0	0	0			1539	556	1354	4290	4511	4511				1
GADFLVTEVENGGSLGSKK	GlyGly (K);Deamidation (NQ)	2021.9906	0.99056411	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	1	1	0	1	1	2	2	2	1	2	2	1	1	37.629	37.629	3	8.5037E-24	9169	20190821_JH_EV_Ubi	168.69	105.83	156060000	7597100	18551000	26128000	7372600	6742900	24337000	25428000	4264200	35635000			1540	556	1355	4291;4292;4293;4294;4295;4296;4297;4298;4299;4300;4301;4302;4303;4304	4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526	4512	209	543;544		15
GADFLVTEVENGGSLGSKK	GlyGly (K)	2021.0065	0.006548526	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	0	1		1								38.032	38.032	3	6.5491E-05	8743	20190821_JH_MUT_Ubi	104.2	58.581	2555100	0	2555100	0	0	0	0	0	0	0			1541	556	1355	4305	4527	4527		543;544		1
GADKSSNFLYLQVK	GlyGly (K)	1682.8628	0.86278482	1880	sp|Q9BUP3-3|HTAI2_HUMAN;sp|Q9BUP3|HTAI2_HUMAN	yes	no	0	0	1	0	1									1	34.632	34.632	3	0.020271	9705	20190902_JH_WT_Ubi_3	63.181	16.301	3121700	0	0	0	0	0	0	0	0	3121700			1542	1880	1356	4306	4528	4528		1822		1
GAEAANVTGPGGVPVQGSKYAADR	GlyGly (K)	2385.1673	0.1672997	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1			1	1	29.367	29.367	3	2.4005E-08	6689	20190902_JH_EV_Ubi_2	108.96	77.317	58060000	4776900	4623000	9071500	3602200	7516100	0	0	11653000	16817000			1543	1090	1357	4307;4308;4309;4310;4311;4312;4313	4529;4530;4531;4532;4533;4534;4535	4530		1084		7
GAEEMETVIPVDVMR	2 Oxidation (M)	1706.7855	0.78552206	1835	sp|Q99497|PARK7_HUMAN	yes	yes	0	0	0	2	0									1	36.598	36.598	2	3.6352E-08	10364	20190902_JH_WT_Ubi_3	142.89	84.218	8029600	0	0	0	0	0	0	0	0	8029600			1544	1835	1358	4314	4536	4536			1013;1014	1
GAEGKPGVEAGQEPAEAGER	GlyGly (K)	2051.9508	0.95082456	1297	sp|Q14596-2|NBR1_HUMAN;sp|Q14596|NBR1_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1				22.407	22.407	3	3.5459E-14	3574	20190821_JH_MUT_Ubi	145.17	111.54	4585300	926450	534380	0	1136000	1303300	685200	0	0	0			1545	1297	1359	4315;4316;4317;4318;4319	4537;4538;4539;4540;4541	4540		1360		5
GAESAESADAAIMNNDPNFTETIDESKK	Oxidation (M);GlyGly (K)	3084.3466	0.34658179	2122	sp|Q9UHC6-2|CNTP2_HUMAN;sp|Q9UHC6|CNTP2_HUMAN	yes	no	0	0	1	1	1	1	1		1	1	1	1			34.867	34.867	3	1.5263E-60	8584	20190902_JH_MUT_Ubi_3	184.14	164.93	28261000	4870600	4420700	0	3615000	5064700	4623500	5666600	0	0			1546	2122	1360	4320;4321;4322;4323;4324;4325	4542;4543;4544;4545;4546;4547;4548	4548		1990;1991	1121	7
GAESAESADAAIMNNDPNFTETIDESKK	GlyGly (K)	3068.3517	0.35166717	2122	sp|Q9UHC6-2|CNTP2_HUMAN;sp|Q9UHC6|CNTP2_HUMAN	yes	no	0	0	1	0	1	1									37.644	37.644	3	1.1974E-49	9283	20190821_JH_EV_Ubi	180.68	143.47	1628800	1628800	0	0	0	0	0	0	0	0			1547	2122	1360	4326	4549	4549		1990;1991		1
GAESAESADAAIMNNDPNFTETIDESKK	GlyGly (K);Deamidation (NQ)	3069.3357	0.33568275	2122	sp|Q9UHC6-2|CNTP2_HUMAN;sp|Q9UHC6|CNTP2_HUMAN	yes	no	0	1	1	0	1		1								37.965	37.965	3	0.0039291	8725	20190821_JH_MUT_Ubi	90.778	60.555	0	0	0	0	0	0	0	0	0	0			1548	2122	1360	4327	4550	4550	672	1990;1991		1
GAGSKTLQQNAESR	GlyGly (K)	1559.7652	0.76519604	360	sp|O95816-2|BAG2_HUMAN;sp|O95816|BAG2_HUMAN	yes	no	0	0	1	0	1						1		1	1	16.989	16.989	3	0.00014812	3785	20190902_JH_MUT_Ubi_2	116.19	63.725	36170000	0	0	0	0	0	14087000	0	11314000	10769000			1549	360	1361	4328;4329;4330	4551;4552;4553	4551		323		3
GAGSYTIMVLFADQATPTSPIR	Oxidation (M)	2311.1518	0.15183255	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1		48.445	48.445	3	3.6711E-22	13409	20190821_JH_WT_Ubi	153.36	122.71	12897000	0	1255700	5248400	0	0	1261600	1283500	3847800	0			1550	637	1362	4331;4332;4333;4334;4335	4554;4555;4556;4557;4558	4557			388	5
GAGSYTIMVLFADQATPTSPIR	Unmodified	2295.1569	0.15691793	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0		1								53.087	53.087	3	6.9827E-06	14068	20190821_JH_MUT_Ubi	90.755	59.354	1951000	0	1951000	0	0	0	0	0	0	0			1551	637	1362	4336	4559	4559				1
GAGTGGLGLTVEGPCEAK	Unmodified	1672.809	0.80903469	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	no	no	0	0	0	0	0								1	1	34.927	34.927	2	2.2338E-11	9709	20190902_JH_WT_Ubi_3	144.51	88.701	19825000	0	0	0	0	0	0	0	10919000	8906900			1552	282	1363	4337;4338	4560;4561	4561				2
GAGTNEKVLTEIIASR	GlyGly (K)	1771.9428	0.94282606	479	sp|P08758|ANXA5_HUMAN	yes	yes	0	0	1	0	1							1			35.765	35.765	3	0.006536	9030	20190902_JH_MUT_Ubi_3	71.697	26.49	2019200	0	0	0	0	0	0	2019200	0	0			1553	479	1364	4339	4562	4562		481		1
GAHGIIVVYDVTDQESFNNVK	Unmodified	2304.1386	0.13862533	1058	sp|P62820|RAB1A_HUMAN	yes	yes	0	0	0	0	0		1	1							40.111	40.111	3	2.6142E-81	9919	20190821_JH_WT_Ubi	229.69	178.56	20785000	0	3543000	17242000	0	0	0	0	0	0			1554	1058	1365	4340;4341	4563;4564	4564				2
GAHGIIVVYDVTDQESFNNVKQWLQEIDR	GlyGly (K)	3486.7168	0.71679587	1058	sp|P62820|RAB1A_HUMAN	yes	yes	0	0	1	0	1			1							51.689	51.689	4	3.0191E-11	14572	20190821_JH_WT_Ubi	108.14	85.745	2921300	0	0	2921300	0	0	0	0	0	0			1555	1058	1366	4342	4565	4565		1032		1
GAHLTALEMLTAFASHIR	Oxidation (M)	1954.0095	0.0094658344	1774	sp|Q96EL3|RM53_HUMAN	yes	yes	0	0	0	1	0			1					1		44.594	44.594	4	0.0036289	11821	20190821_JH_WT_Ubi	68.576	11.288	9220900	0	0	6035300	0	0	0	0	3185600	0			1556	1774	1367	4343;4344	4566;4567	4566			999	2
GAHNGQGLGNAFLSHISACDGIFHLTR	Deamidation (NQ)	2850.362	0.36199354	2031	sp|Q9NTK5-3|OLA1_HUMAN;sp|Q9NTK5|OLA1_HUMAN	yes	no	0	1	0	0	0			1						1	43.535	43.535	4	3.2037E-05	11308	20190821_JH_WT_Ubi	81.477	52.131	17598000	0	0	4724800	0	0	0	0	0	12873000			1557	2031	1368	4345;4346	4568;4569	4568	648;649			2
GAILNISSGSGMLPVPLLTIYSATK	Oxidation (M)	2518.3717	0.37166174	1418	sp|Q53GQ0|DHB12_HUMAN	yes	yes	0	0	0	1	0	1	1	1			1	1	1	1	54.526	54.526	3	3.7552E-34	15680	20190902_JH_WT_Ubi_3	165.4	137.22	57284000	1621700	11529000	24574000	0	0	2661500	1802700	6638600	8456300			1558	1418	1369	4347;4348;4349;4350;4351;4352;4353	4570;4571;4572;4573;4574;4575;4576	4576			868	7
GAILNISSGSGMLPVPLLTIYSATK	Unmodified	2502.3767	0.37674711	1418	sp|Q53GQ0|DHB12_HUMAN	yes	yes	0	0	0	0	0		1	1							55.803	55.803	3	4.4437E-20	14883	20190821_JH_MUT_Ubi	140.48	110.26	9613500	0	3011000	6602400	0	0	0	0	0	0			1559	1418	1369	4354;4355	4577;4578	4577				2
GAIQLGIGYTVGHLSSKPER	GlyGly (K)	2196.1651	0.16511485	240	sp|O60331-4|PI51C_HUMAN;sp|O60331|PI51C_HUMAN;sp|O60331-2|PI51C_HUMAN;sp|O60331-3|PI51C_HUMAN	yes	no	0	0	1	0	1		1	1			1		1	1	34.962	34.962	3	1.6178E-09	7994	20190821_JH_WT_Ubi	130.95	84.628	86400000	0	2951600	54092000	0	0	3703000	0	12757000	12896000			1560	240	1370	4356;4357;4358;4359;4360	4579;4580;4581;4582;4583	4581		212		5
GAIQLGITHTVGSLSTKPER	Unmodified	2064.1328	0.13275209	1846	sp|Q99755-2|PI51A_HUMAN;sp|Q99755-4|PI51A_HUMAN;sp|Q99755-3|PI51A_HUMAN;sp|Q99755|PI51A_HUMAN	yes	no	0	0	0	0	1	1	1			1	1				32.381	32.381	3	2.7781E-06	6857	20190821_JH_MUT_Ubi	119.62	82.692	10215000	3209800	2364000	0	0	1390400	3250700	0	0	0			1561	1846	1371	4361;4362;4363;4364	4584;4585;4586;4587	4586				4
GAIQLGITHTVGSLSTKPER	GlyGly (K)	2178.1757	0.17567954	1846	sp|Q99755-2|PI51A_HUMAN;sp|Q99755-4|PI51A_HUMAN;sp|Q99755-3|PI51A_HUMAN;sp|Q99755|PI51A_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	2	1		29.078	29.078	3;4	3.1418E-49	7126	20190821_JH_WT_Ubi	202.79	160.21	1617700000	82741000	250830000	790940000	131430000	19456000	90908000	89014000	162420000	0			1562	1846	1371	4365;4366;4367;4368;4369;4370;4371;4372;4373	4588;4589;4590;4591;4592;4593;4594;4595;4596	4595		1804		9
GAIQLGITHTVGSLSTKPER	GlyGly (K);Deamidation (NQ)	2179.1597	0.15969512	1846	sp|Q99755-2|PI51A_HUMAN;sp|Q99755-4|PI51A_HUMAN;sp|Q99755-3|PI51A_HUMAN;sp|Q99755|PI51A_HUMAN	yes	no	0	1	1	0	1						1	1	1		33.564	33.564	3	1.4148E-17	8648	20190902_JH_MUT_Ubi_2	153.21	104.33	50988000	0	0	0	0	0	16173000	8553200	26262000	0			1563	1846	1371	4374;4375;4376	4597;4598;4599	4597	1210	1804		3
GAKGNQGAAPIQNQQAWQQPGNPYSSSQR	GlyGly (K)	3181.5038	0.5037834	95	sp|A8MQ03|CRTP1_HUMAN	yes	yes	0	0	1	0	1		1								30.191	30.191	3	0.00019104	5947	20190821_JH_MUT_Ubi	70.504	42.866	1142600	0	1142600	0	0	0	0	0	0	0			1564	95	1372	4377	4600	4600		84		1
GAKLTPEEEEILNK	GlyGly (K)	1683.8679	0.86792978	1040	sp|P62241|RS8_HUMAN	yes	yes	0	0	1	0	1		1		1						29.859	29.859	3	0.026287	6910	20190902_JH_EV_Ubi_2	59.248	13.967	1050700	0	0	0	1050700	0	0	0	0	0			1565	1040	1373	4378;4379	4601;4602	4601		1016		2
GALQNIIPASTGAAKAVGK	GlyGly (K)	1880.048	0.047959831	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	34.256	34.256	3	1.519E-05	8261	20190902_JH_EV_Ubi_3	109.67	82.641	115910000	10049000	11090000	16359000	7747500	8748000	17576000	20432000	12124000	11781000			1566	407	1374	4380;4381;4382;4383;4384;4385;4386;4387;4388	4603;4604;4605;4606;4607;4608;4609;4610;4611	4605		373		9
GALQYLVPILTQTLTK	Unmodified	1758.0291	0.029121869	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1		1	54.992	54.992	3	2.6475E-19	15788	20190821_JH_WT_Ubi	166.9	139.81	22431000	0	11775000	4633600	0	0	2404500	2186400	0	1431400			1567	1311	1375	4389;4390;4391;4392;4393	4612;4613;4614;4615;4616	4615				5
GALYCELCYEKFFAPECGR	GlyGly (K)	2483.0708	0.070821817	1783	sp|Q96HC4-7|PDLI5_HUMAN;sp|Q96HC4-4|PDLI5_HUMAN;sp|Q96HC4|PDLI5_HUMAN;sp|Q96HC4-6|PDLI5_HUMAN	yes	no	0	0	1	0	1		1				1		1		44.276	44.276	3	0.0047582	13335	20190902_JH_WT_Ubi_2	66.939	46.769	5732900	0	1438400	0	0	0	1276700	0	3017800	0			1568	1783	1376	4394;4395;4396	4617;4618;4619;4620	4620		1749		4
GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER	3 Oxidation (M)	3498.6833	0.68331218	1337	sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN	yes	no	0	0	0	3	0					1					42.969	42.969	3	0.00013481	10895	20190902_JH_EV_Ubi_3	51.975	31.52	1430000	0	0	0	0	1430000	0	0	0	0			1569	1337	1377	4397	4621	4621			836;837;838	1
GANFLTQILLRPGASDLTGSFR	Unmodified	2333.2492	0.24917883	259	sp|O60762|DPM1_HUMAN	yes	yes	0	0	0	0	1	1		1					1	1	50.338	50.338	3	0.0033336	15101	20190902_JH_WT_Ubi_2	73.76	33.246	11999000	2508500	0	6372200	0	0	0	0	1639000	1479700			1570	259	1378	4398;4399;4400;4401	4622;4623;4624;4625	4624				4
GANVIAGVWLEEAGQK	Unmodified	1640.8522	0.85222014	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0								1	1	44.368	44.368	2	2.0493E-06	13381	20190902_JH_WT_Ubi_2	117.27	72.132	2899200	0	0	0	0	0	0	0	1383500	1515700			1571	1332	1379	4402;4403	4626;4627	4626				1
GAPTTSLISVAVTK	Unmodified	1343.766	0.76603089	884	sp|P49419-2|AL7A1_HUMAN;sp|P49419-4|AL7A1_HUMAN;sp|P49419|AL7A1_HUMAN	yes	no	0	0	0	0	0					1					37.649	37.649	2	0.035117	9317	20190902_JH_EV_Ubi_3	45.891	16.973	343080	0	0	0	0	343080	0	0	0	0			1572	884	1380	4404	4628	4628				0
GAQAAIVVYDITNTDTFAR	Deamidation (NQ)	2026.0007	0.0007348666	915	sp|P51148|RAB5C_HUMAN;sp|P51148-2|RAB5C_HUMAN	yes	no	0	1	0	0	0	1									46.823	46.823	3	0.014999	12694	20190821_JH_EV_Ubi	91.401	56.309	0	0	0	0	0	0	0	0	0	0			1573	915	1381	4405	4629	4629	938			1
GAQAAIVVYDITNTDTFAR	Unmodified	2025.0167	0.016719282	915	sp|P51148|RAB5C_HUMAN;sp|P51148-2|RAB5C_HUMAN	yes	no	0	0	0	0	0			1			1			1	46.532	46.532	2;3	2.4678E-09	12677	20190821_JH_WT_Ubi	130.77	93.177	4426100	0	0	3897500	0	0	528540	0	0	0			1574	915	1381	4406;4407;4408	4630;4631;4632	4631				3
GASIAHCPNSNLSLSSGFLNVLEVLK	Unmodified	2726.4061	0.40614976	2212	sp|Q9Y2T3-2|GUAD_HUMAN;sp|Q9Y2T3|GUAD_HUMAN;sp|Q9Y2T3-3|GUAD_HUMAN	yes	no	0	0	0	0	0	1		1							52.423	52.423	3	0.00083086	14139	20190821_JH_EV_Ubi	63.272	28.583	9130500	2284800	0	6845800	0	0	0	0	0	0			1575	2212	1382	4409;4410	4633;4634	4633				2
GASQASGPLPGPHFPLPGR	Unmodified	1841.9537	0.95366552	1360	sp|Q15654|TRIP6_HUMAN	yes	yes	0	0	0	0	0	1			1	1					36.764	36.764	3	0.0092688	9171	20190821_JH_EV_Ubi	57.148	14.628	4053300	1734000	0	0	1472900	846420	0	0	0	0			1576	1360	1383	4411;4412;4413	4635;4636;4637	4635				3
GAVDALAAALAHISGASSFEPR	Unmodified	2110.0807	0.080716522	1856	sp|Q9BQ39|DDX50_HUMAN	yes	yes	0	0	0	0	0	1				1					53.582	53.582	3	0.000993	14354	20190821_JH_EV_Ubi	70.907	41.184	1859500	1420400	0	0	0	439110	0	0	0	0			1577	1856	1384	4414;4415	4638;4639	4638				2
GAVEALAAALAHISGATSVDQR	Unmodified	2107.1022	0.10218025	2009	sp|Q9NR30-2|DDX21_HUMAN;sp|Q9NR30|DDX21_HUMAN	yes	no	0	0	0	0	0	1	1			1					51.716	51.716	3	4.2307E-30	13992	20190821_JH_EV_Ubi	169.58	126.55	4823800	2891600	817770	0	0	1114400	0	0	0	0			1578	2009	1385	4416;4417;4418	4640;4641;4642	4640				3
GAVGALLVYDIAK	Unmodified	1288.7391	0.73908786	1370	sp|Q15907-2|RB11B_HUMAN;sp|Q15907|RB11B_HUMAN;sp|P62491-2|RB11A_HUMAN;sp|P62491|RB11A_HUMAN	yes	no	0	0	0	0	0			1							45.233	45.233	2	1.5075E-06	12100	20190821_JH_WT_Ubi	141.93	96.91	5097400	0	0	5097400	0	0	0	0	0	0			1579	1370	1386	4419	4643	4643				0
GCITIIGGGDTATCCAKWNTEDK	GlyGly (K)	2641.1571	0.15707064	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	0	1		1	1			1			1	35.023	35.023	3	1.2552E-06	7868	20190821_JH_MUT_Ubi	98.292	72.467	9907200	0	2772200	4708200	0	0	0	0	0	2426800			1580	383	1387	4420;4421;4422;4423	4644;4645;4646;4647	4644		347		4
GCKGLGLGTEGPQGTGGLEPDLAR	GlyGly (K)	2453.1969	0.19688527	1775	sp|Q96EP0-3|RNF31_HUMAN;sp|Q96EP0|RNF31_HUMAN	yes	no	0	0	1	0	1				1			1			35.437	35.437	3	6.1821E-07	8878	20190902_JH_MUT_Ubi_3	97.5	66.816	5236500	0	0	0	1389300	0	0	3847200	0	0			1581	1775	1388	4424;4425	4648;4649	4649		1747		2
GCQLLVYPGAFNLTTGPAHWELLQR	Unmodified	2840.4432	0.44320397	2006	sp|Q9NQR4|NIT2_HUMAN	yes	yes	0	0	0	0	0		1	1					1		51.46	51.46	3	0.0040685	14460	20190821_JH_WT_Ubi	54.117	25.353	13713000	0	1950700	7816900	0	0	0	0	3945200	0			1582	2006	1389	4426;4427;4428	4650;4651;4652	4651				3
GDADQASNILASFGLSAR	Unmodified	1791.8751	0.87514042	841	sp|P43243|MATR3_HUMAN	yes	yes	0	0	0	0	0								1		51.655	51.655	2	0.0018296	15417	20190902_JH_WT_Ubi_2	105.58	60.223	0	0	0	0	0	0	0	0	0	0			1583	841	1390	4429	4653	4653				1
GDAEKPEEELEEDDDEELDETLSER	Unmodified	2920.2105	0.21052504	2023	sp|Q9NS69|TOM22_HUMAN	yes	yes	0	0	0	0	1								1		38.517	38.517	3	0.00045041	11358	20190902_JH_WT_Ubi_2	81.38	58.494	2075100	0	0	0	0	0	0	0	2075100	0			1584	2023	1391	4430	4654	4654				1
GDATVSYEDPPTAKAAVEWFDGK	GlyGly (K)	2567.1816	0.18161236	1138	sp|Q01844-2|EWS_HUMAN;sp|Q01844-6|EWS_HUMAN;sp|Q01844-3|EWS_HUMAN;sp|Q01844|EWS_HUMAN;sp|Q01844-5|EWS_HUMAN	yes	no	0	0	1	0	1	1	1								43.524	43.524	3	1.6893E-06	10912	20190821_JH_MUT_Ubi	97.621	64.763	4110800	2099200	2011700	0	0	0	0	0	0	0			1585	1138	1392	4431;4432	4655;4656;4657	4657		1133		3
GDCYQVLIEDCIPVLK	Unmodified	1920.9325	0.93252065	939	sp|P52788|SPSY_HUMAN;sp|P52788-2|SPSY_HUMAN	yes	no	0	0	0	0	0									1	49.725	49.725	2	0.0013307	14558	20190902_JH_WT_Ubi_3	91.712	43.272	679900	0	0	0	0	0	0	0	0	679900			1586	939	1393	4433	4658	4658				1
GDDLSTAILKQK	GlyGly (K)	1401.7464	0.74635808	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	30.505	30.505	3	1.3697E-11	6481	20190821_JH_WT_Ubi	161.19	73.622	586780000	38401000	28515000	100510000	46313000	49089000	41763000	52764000	116770000	112650000			1587	974	1394	4434;4435;4436;4437;4438;4439;4440;4441;4442	4659;4660;4661;4662;4663;4664;4665;4666;4667	4665		957		9
GDDLSTAILKQK	GlyGly (K);Deamidation (NQ)	1402.7304	0.73037367	974	sp|P55072|TERA_HUMAN	yes	yes	0	1	1	0	1				1	1	1		1	1	31.225	31.225	3	0.0012152	7323	20190902_JH_EV_Ubi_2	127.87	69.599	22399000	0	0	0	2590500	0	3935400	0	8505800	7366800			1588	974	1394	4443;4444;4445;4446;4447	4668;4669;4670;4671;4672	4668	949	957		4
GDDTGVLLPTPGEAQDADLKDVNVIPATA	GlyGly (K)	3005.4829	0.48293934	984	sp|P55899|FCGRN_HUMAN	yes	yes	0	0	1	0	1					1	1		1	1	50.331	50.331	3	0.0020424	14714	20190902_JH_WT_Ubi_3	52.773	25.231	9743700	0	0	0	0	874830	2211000	0	3236900	3421100			1589	984	1395	4448;4449;4450;4451	4673;4674;4675;4676;4677	4677		969		5
GDECQLVGPAQPSHWK	Unmodified	1807.8312	0.83116712	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1					1	1	30.276	30.276	3	0.00053655	8079	20190902_JH_WT_Ubi_3	96.247	61.497	16506000	0	0	6373300	0	0	0	0	5683700	4449300			1590	1332	1396	4452;4453;4454	4678;4679;4680	4680				3
GDERPHYYGKHGTPQK	Acetyl (Protein N-term);GlyGly (K)	2024.9453	0.94528567	1577	sp|Q8IWA5|CTL2_HUMAN;sp|Q8IWA5-2|CTL2_HUMAN	yes	no	1	0	1	0	2				1						17.843	17.843	3	0.0038022	3739	20190902_JH_EV_Ubi_2	77.324	40.331	227250	0	0	0	227250	0	0	0	0	0			1591	1577	1397	4455	4681	4681		1576		0
GDIKVSAPGVQGDVK	GlyGly (K)	1582.8315	0.83148469	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								27.715	27.715	3	0.016073	5013	20190821_JH_MUT_Ubi	63.31	38.613	1287900	0	1287900	0	0	0	0	0	0	0			1592	1190	1398	4456	4682	4682		1197;1198		1
GDLDASVPSMKVHAPGLNLSGVGGK	Oxidation (M);GlyGly (K)	2535.2751	0.27513559	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	1	1							1			34.511	34.511	4	0.020174	8562	20190902_JH_MUT_Ubi_3	40.197	16.471	1785700	0	0	0	0	0	0	1785700	0	0			1593	1190	1399	4457	4683	4683		1199	746	1
GDLENAFLNLVQCIQNK	Unmodified	1974.9833	0.98331066	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	55.471	55.471	3	5.6797E-96	14809	20190821_JH_MUT_Ubi	246.77	170.18	50739000	2403900	13818000	16686000	0	0	6038500	2867100	6595000	2330900			1594	446	1400	4458;4459;4460;4461;4462;4463;4464	4684;4685;4686;4687;4688;4689;4690	4685				7
GDLENAFLNLVQCIQNKPLYFADR	GlyGly (K);Deamidation (NQ)	2952.444	0.44399183	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	1	1	0	1		2					1	1		53.901	53.901	3	2.152E-05	14513	20190821_JH_MUT_Ubi	96.591	65.231	8065200	0	4458800	0	0	0	0	959690	2646800	0			1595	446	1401	4465;4466;4467;4468	4691;4692;4693;4694	4692	160	441		4
GDLGIEIPAEKVFLAQK	GlyGly (K)	1941.0571	0.057127533	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN;sp|P30613-2|KPYR_HUMAN;sp|P30613|KPYR_HUMAN	yes	no	0	0	1	0	1							1			44.541	44.541	3	0.0027838	11856	20190902_JH_MUT_Ubi_3	75.669	48.329	758630	0	0	0	0	0	0	758630	0	0			1596	556	1402	4469	4695	4695		545		1
GDLNDCFIPCTPKGCLELIK	GlyGly (K);Deamidation (NQ)	2464.1437	0.14365241	527	sp|P11586|C1TC_HUMAN	yes	yes	0	1	1	0	1							1			42.712	42.712	3	0.026653	11261	20190902_JH_MUT_Ubi_3	54.288	26.588	0	0	0	0	0	0	0	0	0	0			1597	527	1403	4470	4696	4696	205	524		1
GDLSGHFEHLMVALVTPPAVFDAK	Oxidation (M)	2566.289	0.28899474	535	sp|P12429|ANXA3_HUMAN	yes	yes	0	0	0	1	0	1	1	1				1		1	45.303	45.303	3;4	7.2209E-08	11735	20190821_JH_MUT_Ubi	102.9	57.204	30626000	1601600	2998100	15775000	0	0	0	7872100	0	2379200			1598	535	1404	4471;4472;4473;4474;4475	4697;4698;4699;4700;4701	4698			318	4
GDLSGHFEHLMVALVTPPAVFDAK	Unmodified	2550.2941	0.29408012	535	sp|P12429|ANXA3_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	51.591	51.591	3;4	0.0039821	13741	20190821_JH_MUT_Ubi	54.672	26.469	27487000	0	8320900	10242000	0	0	1704300	2790600	1739600	2689600			1599	535	1404	4476;4477;4478;4479;4480;4481	4702;4703;4704;4705;4706;4707	4702				6
GDPFQNDPFAEQQTTSTDPFGGDPFKESDPFR	GlyGly (K)	3687.6026	0.60261355	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN;sp|Q9UBC2-3|EP15R_HUMAN	yes	no	0	0	1	0	1								1		50.513	50.513	3	6.8571E-05	15104	20190902_JH_WT_Ubi_2	69.054	47.587	2922500	0	0	0	0	0	0	0	2922500	0			1600	2101	1405	4482	4708	4708		1974		1
GDQENVHPDVMLVQPR	Oxidation (M)	1848.8788	0.87884559	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	0	1	0			1							30.666	30.666	3	0.010969	6498	20190821_JH_WT_Ubi	63.31	27.653	6049700	0	0	6049700	0	0	0	0	0	0			1601	1311	1406	4483	4709	4709			819	1
GDSFTHTPPLDPQELDILK	Unmodified	2122.0582	0.058249746	382	sp|P00533|EGFR_HUMAN;sp|P00533-4|EGFR_HUMAN;sp|P00533-3|EGFR_HUMAN;sp|P00533-2|EGFR_HUMAN	yes	no	0	0	0	0	0	1		1					1		45.005	45.005	3	2.8259E-06	12002	20190821_JH_WT_Ubi	112.57	40.251	9479300	1321600	0	5283000	0	0	0	0	2874600	0			1602	382	1407	4484;4485;4486	4710;4711;4712	4711				3
GDSHLNVQVSNFK	Unmodified	1443.7106	0.71064128	1549	sp|Q86UE4|LYRIC_HUMAN	yes	yes	0	0	0	0	0	1	1		2	2		1			28.558	28.558	2;3	0.0023529	6470	20190902_JH_EV_Ubi_2	94.688	45.707	20169000	5005000	1621600	0	6460000	5056000	0	2026400	0	0			1603	1549	1408	4487;4488;4489;4490;4491;4492;4493	4713;4714;4715;4716;4717;4718;4719	4714				5
GDSSSLVAELQEKLQEEK	GlyGly (K)	2103.0332	0.033157207	1682	sp|Q8TDY2-2|RBCC1_HUMAN;sp|Q8TDY2|RBCC1_HUMAN	yes	no	0	0	1	0	1			1							38.651	38.651	2	0.022294	9385	20190821_JH_WT_Ubi	69.815	23.109	0	0	0	0	0	0	0	0	0	0			1604	1682	1409	4494	4720	4720		1679		1
GDTANEIGQVLHFENVK	Unmodified	1869.9221	0.92209062	790	sp|P36952|SPB5_HUMAN;sp|P36952-2|SPB5_HUMAN	yes	no	0	0	0	0	0			1						1	40.212	40.212	3	0.024996	11544	20190902_JH_WT_Ubi_3	46.926	15.606	11970000	0	0	7910300	0	0	0	0	0	4060200			1605	790	1410	4495;4496	4721;4722	4722				2
GDVDVTLPK	Unmodified	942.50221	0.50221163	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0									1	31.1	31.1	2	0.0086048	8445	20190902_JH_WT_Ubi_3	98.582	13.421	2115500	0	0	0	0	0	0	0	0	2115500			1606	1190	1411	4497	4723	4723				1
GDVEEDETIPDSEQDIRPR	Unmodified	2198.9927	0.99274896	1735	sp|Q92973-3|TNPO1_HUMAN;sp|Q92973-2|TNPO1_HUMAN;sp|Q92973|TNPO1_HUMAN	yes	no	0	0	0	0	1								1		31.584	31.584	3	0.03634	8928	20190902_JH_WT_Ubi_2	61.265	27.423	4963800	0	0	0	0	0	0	0	4963800	0			1607	1735	1412	4498	4724	4724				1
GDVLHMHYTGK	Oxidation (M)	1272.5921	0.59210605	692	sp|P26885|FKBP2_HUMAN	yes	yes	0	0	0	1	0			1					1		19.666	19.666	3	0.0071395	4960	20190902_JH_WT_Ubi_2	91.658	63.745	9109200	0	0	3350400	0	0	0	0	5758800	0			1608	692	1413	4499;4500	4725;4726	4726			433	2
GDVLHMHYTGK	Unmodified	1256.5972	0.59719142	692	sp|P26885|FKBP2_HUMAN	yes	yes	0	0	0	0	0									1	23.249	23.249	3	0.03322	5979	20190902_JH_WT_Ubi_3	57.225	22.423	0	0	0	0	0	0	0	0	0	0			1609	692	1413	4501	4727	4727				1
GDVQAQVGLGQLHLHGGR	Unmodified	1840.9656	0.96562718	2110	sp|Q9UBV2|SE1L1_HUMAN	yes	yes	0	0	0	0	0	1	1		1					1	30.571	30.571	3;4	0.0042421	7019	20190902_JH_EV_Ubi_2	66.965	35.138	12505000	5280200	719430	0	2125700	0	0	0	0	4379800			1610	2110	1414	4502;4503;4504;4505	4728;4729;4730;4731	4729				4
GDVVIVLTGWR	Unmodified	1213.6819	0.68190733	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0			1							46.461	46.461	2	0.036989	12742	20190821_JH_WT_Ubi	58.592	21.832	66391000	0	0	66391000	0	0	0	0	0	0			1611	556	1415	4506	4732	4732				0
GDVVIVLTGWRPGSGFTNTMR	Oxidation (M)	2278.1528	0.15283561	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	1	1		1	1			1	1	1	1	44.186	44.186	3	2.813E-05	11336	20190821_JH_MUT_Ubi	93.753	62.333	153860000	0	16622000	77247000	0	0	12086000	9114200	17264000	21526000			1612	556	1416	4507;4508;4509;4510;4511;4512	4733;4734;4735;4736;4737;4738;4739	4733			343	7
GDVVIVLTGWRPGSGFTNTMR	Unmodified	2262.1579	0.15792099	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	1		1	1							46.075	46.075	3	0.00068855	12387	20190821_JH_WT_Ubi	84.035	44.798	59192000	0	15071000	44121000	0	0	0	0	0	0			1613	556	1416	4513;4514	4740;4741	4741				2
GDVVIVLTGWRPGSGFTNTMR	Oxidation (M);Deamidation (NQ)	2279.1369	0.13685119	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	1	0	1	1			1							46.237	46.237	3	0.011262	12538	20190821_JH_WT_Ubi	60.062	18.004	4443700	0	0	4443700	0	0	0	0	0	0			1614	556	1416	4515	4742	4742	210		343	1
GDYLAVVLATQGHTQVLIHQLSR	Unmodified	2518.3656	0.36560558	1277	sp|Q14137-2|BOP1_HUMAN;sp|Q14137|BOP1_HUMAN	yes	no	0	0	0	0	0			1							45.395	45.395	4	0.036749	12201	20190821_JH_WT_Ubi	29.447	12.695	5849000	0	0	5849000	0	0	0	0	0	0			1615	1277	1417	4516	4743	4743				1
GDYPLEAVR	Unmodified	1018.5084	0.50835964	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0				1						31.96	31.96	2	0.017155	7583	20190902_JH_EV_Ubi_2	87.476	44.562	3207000	0	0	0	3207000	0	0	0	0	0			1616	556	1418	4517	4744	4744				0
GEAAAERPGEAAVASSPSK	Unmodified	1783.8701	0.87005504	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	0	0	1			1	1				1	1	21.326	21.326	3	3.7968E-06	5447	20190902_JH_WT_Ubi_2	120.82	87.026	40726000	0	0	8769700	2172700	0	0	0	19526000	10257000			1617	718	1419	4518;4519;4520;4521	4745;4746;4747;4748;4749	4747				5
GEAAAERPGEAAVASSPSKANGQENGHVK	GlyGly (K);2 Deamidation (NQ)	2934.3704	0.37036919	718	sp|P29966|MARCS_HUMAN	yes	yes	0	2	1	0	2	1	1	1	1	1	1	1	1		21.54	21.54	4	1.4374E-20	5519	20190902_JH_WT_Ubi_2	125.35	85.704	22249000	1221000	667070	6021100	1350000	3207700	1567400	1591300	6623300	0			1618	718	1420	4522;4523;4524;4525;4526;4527;4528;4529	4750;4751;4752;4753;4754;4755;4756;4757;4758;4759	4759	253;254;885	699		10
GEALSALDSKANNLSSLSK	GlyGly (K)	2018.028	0.02801225	288	sp|O75396|SC22B_HUMAN	yes	yes	0	0	1	0	1	1									35.631	35.631	3	0.0047582	8588	20190821_JH_EV_Ubi	66.939	27.31	2483200	2483200	0	0	0	0	0	0	0	0			1619	288	1421	4530	4760	4760		280		1
GEATVSFDDPPSAK	Unmodified	1419.6518	0.65178899	1723	sp|Q92804-2|RBP56_HUMAN;sp|Q92804|RBP56_HUMAN;sp|P35637-2|FUS_HUMAN;sp|P35637|FUS_HUMAN	yes	no	0	0	0	0	0	1									30.884	30.884	2	7.1973E-05	6729	20190821_JH_EV_Ubi	121.68	85.094	3046000	3046000	0	0	0	0	0	0	0	0			1620	1723	1422	4531	4761	4761				1
GEAVGVHCALGFGR	Unmodified	1428.6932	0.69321707	1883	sp|Q9BVJ7|DUS23_HUMAN	yes	yes	0	0	0	0	0						1	1	1		30.351	30.351	3	0.0044569	7052	20190902_JH_MUT_Ubi_3	79.492	46.969	6771100	0	0	0	0	0	835980	1438100	4497100	0			1621	1883	1423	4532;4533;4534	4762;4763;4764	4763				3
GEDSVPDTVHHVVVPVNPK	Unmodified	2024.0327	0.032703697	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN;sp|Q92499-2|DDX1_HUMAN	yes	no	0	0	0	0	0									1	30.253	30.253	4	0.027638	8156	20190902_JH_WT_Ubi_3	39.256	16.603	3985400	0	0	0	0	0	0	0	0	3985400			1622	1708	1424	4535	4765	4765				1
GEEMEKLTWPNADSK	Oxidation (M);GlyGly (K)	1863.8309	0.83089235	1693	sp|Q8WUM9|S20A1_HUMAN	yes	yes	0	0	1	1	1	1			1	1	1			1	29.578	29.578	3	9.7688E-06	6746	20190902_JH_EV_Ubi_3	129.17	71.735	13585000	2318500	0	0	3696900	3926100	753390	0	0	2890400			1623	1693	1425	4536;4537;4538;4539;4540	4766;4767;4768;4769;4770;4771	4768		1687	969	6
GEENTVMIDYVLPDFSTIKKGFCK	Oxidation (M);3 GlyGly (K)	3148.4845	0.48453602	1917	sp|Q9GZN1|ARP6_HUMAN	yes	yes	0	0	3	1	2	1									52.29	52.29	3	0.021388	14106	20190821_JH_EV_Ubi	42.618	6.347	488630	488630	0	0	0	0	0	0	0	0			1624	1917	1426	4541	4772	4772		1852;1853;1854	1047	1
GEETPVIVGSALCALEGR	Unmodified	1856.9302	0.93021246	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	0									1	48.907	48.907	3	0.0034781	14361	20190902_JH_WT_Ubi_3	69.111	46.465	1531800	0	0	0	0	0	0	0	0	1531800			1625	883	1427	4542	4773	4773				1
GEEVTLSNPKGSQEGTK	GlyGly (K)	1873.9017	0.9017491	1298	sp|Q14669-4|TRIPC_HUMAN;sp|Q14669|TRIPC_HUMAN;sp|Q14669-2|TRIPC_HUMAN;sp|Q14669-3|TRIPC_HUMAN	yes	no	0	0	1	0	1	1									23.195	23.195	3	0.022302	4145	20190821_JH_EV_Ubi	53.777	15.824	987870	987870	0	0	0	0	0	0	0	0			1626	1298	1428	4543	4774	4774		1361		1
GEGAGQPSTSAQGQPAAPAPQK	Unmodified	2033.9766	0.97664538	942	sp|P52926-3|HMGA2_HUMAN;sp|P52926-6|HMGA2_HUMAN;sp|P52926-4|HMGA2_HUMAN;sp|P52926-5|HMGA2_HUMAN;sp|P52926-2|HMGA2_HUMAN;sp|P52926|HMGA2_HUMAN	yes	no	0	0	0	0	0			1						1	23.159	23.159	3	0.0001728	5878	20190902_JH_WT_Ubi_3	80.98	39.602	3143400	0	0	795750	0	0	0	0	0	2347600			1627	942	1429	4544;4545	4775;4776	4776				2
GEGDIHENVDTDLPGSLGQSEEK	Unmodified	2425.0881	0.088105904	2149	sp|Q9UK76|JUPI1_HUMAN;sp|Q9UK76-3|JUPI1_HUMAN	yes	no	0	0	0	0	0			1					1	1	33.902	33.902	3	8.8044E-12	9825	20190902_JH_WT_Ubi_2	127.5	77.503	11599000	0	0	3559100	0	0	0	0	4622800	3417500			1628	2149	1430	4546;4547;4548	4777;4778;4779;4780	4779				4
GEGPEVDVKLPK	GlyGly (K)	1380.7249	0.72489436	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			29.264	29.264	3	0.019915	6764	20190902_JH_MUT_Ubi_3	70.488	24.492	2881800	0	0	0	0	0	0	2881800	0	0			1629	1190	1431	4549	4781	4781		1200		1
GEIIAKQGGGGGGGSVPGIER	GlyGly (K)	2009.029	0.029015303	933	sp|P52272-2|HNRPM_HUMAN;sp|P52272|HNRPM_HUMAN	yes	no	0	0	1	0	1		1								28.644	28.644	3	0.004201	5352	20190821_JH_MUT_Ubi	62.739	29.433	1483400	0	1483400	0	0	0	0	0	0	0			1630	933	1432	4550	4782	4782		898		1
GEKILPVFDEPPNPTNVEESLK	GlyGly (K)	2565.2962	0.29624819	2064	sp|Q9NYL9|TMOD3_HUMAN	yes	yes	0	0	1	0	1						1				43.205	43.205	3	0.0027325	12445	20190902_JH_MUT_Ubi_2	64.761	39.252	765320	0	0	0	0	0	765320	0	0	0			1631	2064	1433	4551	4783	4783		1946		1
GELALKDAR	GlyGly (K)	1085.5829	0.58292157	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1			1					1		22.384	22.384	3	0.025574	5814	20190902_JH_WT_Ubi_2	71.614	22.554	6137800	0	0	2280600	0	0	0	0	3857200	0		+	1632	8;19	1434	4552;4553	4784;4785	4785		27		2
GELSGHFEDLLLAIVNCVR	Unmodified	2141.0939	0.093923745	535	sp|P12429|ANXA3_HUMAN	yes	yes	0	0	0	0	0		1	1					1		55.481	55.481	3	2.3578E-13	14802	20190821_JH_MUT_Ubi	138.28	75.245	11931000	0	5043900	4542900	0	0	0	0	2344300	0			1633	535	1435	4554;4555;4556	4786;4787;4788	4786				3
GEMKGSAITGPVAK	Oxidation (M);GlyGly (K)	1474.745	0.74497787	1060	sp|P62829|RL23_HUMAN	yes	yes	0	0	1	1	1				1	1		1			20.423	20.423	3	0.00020041	4245	20190902_JH_EV_Ubi_3	115.34	71.043	7588800	0	0	0	2576400	2387300	0	2625100	0	0			1634	1060	1436	4557;4558;4559	4789;4790;4791	4790		1035	651	3
GEMMDLQHGSLFLQTPK	2 Oxidation (M)	1962.9179	0.91793321	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	2	0	1	1	1			1	1	1	1	34.591	34.591	3	7.6027E-14	9598	20190902_JH_WT_Ubi_3	150.01	104.14	70766000	1069700	997200	17615000	0	0	1721200	1981700	23538000	23843000			1635	442	1437	4560;4561;4562;4563;4564;4565;4566	4792;4793;4794;4795;4796;4797;4798	4798			240;241	7
GEMMDLQHGSLFLQTPK	Oxidation (M)	1946.923	0.92301859	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	1	0			1					1		38.282	38.282	3	0.00051246	9223	20190821_JH_WT_Ubi	94.454	55.877	13832000	0	0	7581900	0	0	0	0	6249800	0			1636	442	1437	4567;4568	4799;4800	4799			240;241	2
GEMMDLQHGSLFLQTPK	Unmodified	1930.9281	0.92810397	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	0	0									1	40.953	40.953	3	0.035976	11809	20190902_JH_WT_Ubi_3	39.982	10.142	2086200	0	0	0	0	0	0	0	0	2086200			1637	442	1437	4569	4801	4801				1
GEMNYTQEPPVQKGFLLK	Oxidation (M);GlyGly (K)	2208.0885	0.088504016	1955	sp|Q9H4L5-8|OSBL3_HUMAN;sp|Q9H4L5-7|OSBL3_HUMAN;sp|Q9H4L5-6|OSBL3_HUMAN;sp|Q9H4L5-5|OSBL3_HUMAN;sp|Q9H4L5-4|OSBL3_HUMAN;sp|Q9H4L5-3|OSBL3_HUMAN;sp|Q9H4L5-2|OSBL3_HUMAN;sp|Q9H4L5|OSBL3_HUMAN	yes	no	0	0	1	1	1								1	1	35.076	35.076	3	0.00050247	9755	20190902_JH_WT_Ubi_3	90.498	66.088	9454100	0	0	0	0	0	0	0	4988300	4465800			1638	1955	1438	4570;4571	4802;4803	4803		1888	1063	2
GEMQVVPVLVHLLSAISSVR	Oxidation (M)	2149.1929	0.19290951	828	sp|P42285|MTREX_HUMAN	yes	yes	0	0	0	1	0		1								55.448	55.448	3	0.019668	14806	20190821_JH_MUT_Ubi	49.089	17.669	1572700	0	1572700	0	0	0	0	0	0	0			1639	828	1439	4572	4804	4804			526	1
GENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR	GlyGly (K)	3869.853	0.85303136	1677	sp|Q8TCZ2-6|C99L2_HUMAN;sp|Q8TCZ2-3|C99L2_HUMAN;sp|Q8TCZ2-2|C99L2_HUMAN;sp|Q8TCZ2|C99L2_HUMAN;sp|Q8TCZ2-5|C99L2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		36.744	36.744	4	1.1612E-07	9099	20190821_JH_EV_Ubi	84.971	58.804	159920000	38101000	8111200	36566000	16505000	13643000	13977000	9538500	23480000	0			1640	1677	1440	4573;4574;4575;4576;4577;4578;4579;4580	4805;4806;4807;4808;4809;4810;4811;4812;4813	4805		1677		9
GENLVSMTVEGPPPK	Oxidation (M)	1569.7709	0.77085827	558	sp|P14678-2|RSMB_HUMAN;sp|P63162|RSMN_HUMAN;sp|P14678|RSMB_HUMAN;sp|P63162-2|RSMN_HUMAN;sp|P14678-3|RSMB_HUMAN	yes	no	0	0	0	1	0	1									31.754	31.754	2	0.0019022	7103	20190821_JH_EV_Ubi	98	52.977	0	0	0	0	0	0	0	0	0	0			1641	558	1441	4581	4814	4814			346	1
GEPHHELPPGSTKR	GlyGly (K)	1654.8176	0.81756596	411	sp|P04637-8|P53_HUMAN;sp|P04637-9|P53_HUMAN;sp|P04637-7|P53_HUMAN;sp|P04637-5|P53_HUMAN;sp|P04637-6|P53_HUMAN;sp|P04637-2|P53_HUMAN;sp|P04637-3|P53_HUMAN;sp|P04637-4|P53_HUMAN;sp|P04637|P53_HUMAN	yes	no	0	0	1	0	1		1				1				15.815	15.815	4	0.00808	2407	20190821_JH_MUT_Ubi	70.563	41.24	1625200	0	587780	0	0	0	1037400	0	0	0			1642	411	1442	4582;4583	4815;4816	4815		379		2
GEVNANAKSFNVDLLAGK	GlyGly (K)	1960.0014	0.0014035686	116	sp|O00214|LEG8_HUMAN;sp|O00214-2|LEG8_HUMAN	yes	no	0	0	1	0	1	1	1			1	1	1			36.443	36.443	3	2.9936E-08	9116	20190902_JH_MUT_Ubi_3	123.92	76.283	29730000	3658300	6648400	0	0	2552400	8559600	8311800	0	0			1643	116	1443	4584;4585;4586;4587;4588	4817;4818;4819;4820;4821	4821		102;103		5
GEYDVTVPK	Unmodified	1006.4971	0.49712625	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1							29.406	29.406	2	0.0073855	6137	20190821_JH_WT_Ubi	102.51	43.361	3477200	0	0	3477200	0	0	0	0	0	0			1644	1190	1444	4589	4822	4822				1
GFAFVTFDDHDSVDK	Unmodified	1698.7526	0.75256567	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	40.394	40.394	3	0.001221	11243	20190902_JH_MUT_Ubi_2	91.62	58.612	135670000	5074800	9582900	39650000	2615300	3981800	10521000	9101700	31216000	23931000			1645	492	1445	4590;4591;4592;4593;4594;4595;4596;4597;4598	4823;4824;4825;4826;4827;4828;4829;4830;4831	4827				9
GFAFVTFDDHDTVDK	Unmodified	1712.7682	0.76821573	931	sp|P51991-2|ROA3_HUMAN;sp|P51991|ROA3_HUMAN	yes	no	0	0	0	0	0			1			1			1	40.569	40.569	3	0.0095269	11646	20190902_JH_WT_Ubi_3	66.393	44.066	30852000	0	0	11359000	0	0	3348800	0	0	16144000			1646	931	1446	4599;4600;4601	4832;4833;4834	4834				3
GFAFVTFESPADAKDAAR	GlyGly (K)	2012.9592	0.9592044	799	sp|P38159-3|RBMX_HUMAN;sp|P38159|RBMX_HUMAN;sp|Q96E39|RMXL1_HUMAN	yes	no	0	0	1	0	1		1								40.841	40.841	3	0.0063213	9831	20190821_JH_MUT_Ubi	66.285	34.759	546000	0	546000	0	0	0	0	0	0	0			1647	799	1447	4602	4835	4835		777		1
GFCHLCDGQEACCVGLEAGINPTDHLITAYR	Unmodified	3533.5585	0.55846279	467	sp|P08559|ODPA_HUMAN;sp|P08559-4|ODPA_HUMAN;sp|P08559-3|ODPA_HUMAN	yes	no	0	0	0	0	0			1							41.521	41.521	4	5.9968E-06	10571	20190821_JH_WT_Ubi	81.904	60.205	6289300	0	0	6289300	0	0	0	0	0	0			1648	467	1448	4603	4836	4836				1
GFCYVEFDEVDSLK	Unmodified	1706.7498	0.74978848	1323	sp|Q15056-2|IF4H_HUMAN;sp|Q15056|IF4H_HUMAN	yes	no	0	0	0	0	0								1		46.062	46.062	2	0.026777	13878	20190902_JH_WT_Ubi_2	71.555	33.999	0	0	0	0	0	0	0	0	0	0			1649	1323	1449	4604	4837	4837				1
GFEVVYMTEPIDEYCVQQLK	Unmodified	2447.1389	0.13888461	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0			1							49.83	49.83	3	0.028928	13938	20190821_JH_WT_Ubi	41.257	10.829	1345500	0	0	1345500	0	0	0	0	0	0			1650	465	1450	4605	4838	4838				1
GFEVVYMTEPIDEYCVQQLK	Oxidation (M)	2463.1338	0.13379923	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	1	0								1		46.437	46.437	3	1.2609E-05	13988	20190902_JH_WT_Ubi_2	107.62	25.502	2736800	0	0	0	0	0	0	0	2736800	0			1651	465	1450	4606	4839	4839			270	1
GFFDPNTHENLTYLQLLER	Unmodified	2306.1331	0.13314602	1332;992	sp|P58107|EPIPL_HUMAN;sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	no	no	0	0	0	0	0								1		49.174	49.174	3	1.067E-59	14757	20190902_JH_WT_Ubi_2	211.45	18.145	14859000	0	0	0	0	0	0	0	14859000	0			1652	992;1332	1451	4607	4840	4840				1
GFFDPNTHENLTYLQLLQR	Deamidation (NQ)	2306.1331	0.13314602	992	sp|P58107|EPIPL_HUMAN	yes	yes	0	1	0	0	0						1			1	48.662	48.662	3	1.9088E-22	14279	20190902_JH_WT_Ubi_3	161.26	8.3622	14808000	0	0	0	0	0	1126500	0	0	13682000			1653	992	1452	4608;4609	4841;4842	4842	954			2
GFGDPFSGKDPFVPSSAAK	GlyGly (K)	2023.964	0.96395543	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN	yes	no	0	0	1	0	1				1	1		1	1	1	40.491	40.491	3	0.00022482	10430	20190902_JH_MUT_Ubi_3	91.317	53.404	10826000	0	0	0	982960	1389400	0	3054400	2458000	2941100			1654	2101	1453	4610;4611;4612;4613;4614	4843;4844;4845;4846;4847	4845		1972;1975		5
GFGFGQGAGALVHSE	Unmodified	1432.6735	0.67352749	636	sp|P21291|CSRP1_HUMAN	yes	yes	0	0	0	0	0		1				1				39.316	39.316	2	0.0067698	10763	20190902_JH_MUT_Ubi_2	81.017	30.983	1626400	0	690100	0	0	0	936270	0	0	0			1655	636	1454	4615;4616	4848;4849	4849				0
GFGFITFTNPEHASVAMR	Oxidation (M)	1996.9465	0.94653123	1116	sp|P98179|RBM3_HUMAN	yes	yes	0	0	0	1	0		1	1				1	1	1	40.677	40.677	3	6.1879E-06	12136	20190902_JH_WT_Ubi_2	114.21	76.019	81233000	0	5644000	28103000	0	0	0	9090400	14767000	23629000			1656	1116	1455	4617;4618;4619;4620;4621	4850;4851;4852;4853;4854	4853			691	5
GFGFITFTNPEHASVAMR	Unmodified	1980.9516	0.9516166	1116	sp|P98179|RBM3_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1		42.736	42.736	3	5.8896E-05	11154	20190821_JH_WT_Ubi	105.14	61.821	23710000	0	3683200	11244000	0	0	3222900	1701300	3858700	0			1657	1116	1455	4622;4623;4624;4625;4626	4855;4856;4857;4858;4859	4858				5
GFGFVTFDDHDPVDK	Unmodified	1694.7577	0.75765105	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	41	41	3	8.4391E-05	11772	20190902_JH_WT_Ubi_3	111.79	82.981	162840000	6529500	7932800	50494000	5093200	5670100	11636000	7625800	33147000	34708000			1658	653	1456	4627;4628;4629;4630;4631;4632;4633;4634;4635	4860;4861;4862;4863;4864;4865;4866;4867;4868	4868				9
GFGFVTFSSMAEVDAAMAAR	2 Oxidation (M)	2095.9343	0.93431156	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	0	2	0			1					1	1	46.209	46.209	3	3.2078E-18	13995	20190902_JH_WT_Ubi_2	149.19	97.466	4431500	0	0	1407700	0	0	0	0	1553400	1470400			1659	653	1457	4636;4637;4638	4869;4870;4871;4872	4870			405;406	3
GFGFVTYATVEEVDAAMNAR	Oxidation (M)	2162.9943	0.99426928	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN	yes	no	0	0	0	1	0	1	1	1	1		1	1	1	1	47.54	47.54	3	1.8794E-140	12445	20190821_JH_MUT_Ubi	270.99	205.81	53865000	2703000	3181700	13261000	905230	0	3303000	2210200	10756000	17545000			1660	492	1458	4639;4640;4641;4642;4643;4644;4645;4646	4873;4874;4875;4876;4877;4878;4879;4880;4881	4875			285	9
GFGFVTYATVEEVDAAMNAR	Unmodified	2146.9994	0.99935466	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN	yes	no	0	0	0	0	0			1					1	1	53.073	53.073	3	6.8114E-31	14976	20190821_JH_WT_Ubi	174.35	121.34	7341300	0	0	5070100	0	0	0	0	1180400	1090700			1661	492	1458	4647;4648;4649	4882;4883;4884	4882				3
GFGHIGIAVPDVYSACK	Unmodified	1789.8821	0.88214006	1156	sp|Q04760-2|LGUL_HUMAN;sp|Q04760|LGUL_HUMAN	yes	no	0	0	0	0	0			1				1	1	1	39.641	39.641	3	0.00025283	11330	20190902_JH_WT_Ubi_3	98.676	64.399	43753000	0	0	16942000	0	0	0	3851000	10464000	12496000			1662	1156	1459	4650;4651;4652;4653	4885;4886;4887;4888	4888				4
GFGVQELKILQSDLLFEQSR	GlyGly (K)	2420.27	0.26997386	1877	sp|Q9BUB4-2|ADAT1_HUMAN;sp|Q9BUB4|ADAT1_HUMAN	yes	no	0	0	1	0	1			1							50.83	50.83	3	0.0037601	14292	20190821_JH_WT_Ubi	66.76	33.902	1869000	0	0	1869000	0	0	0	0	0	0			1663	1877	1460	4654	4889	4889		1821		1
GFHQVPFAPIVFIER	Unmodified	1755.9461	0.94606094	866	sp|P47897-2|SYQ_HUMAN;sp|P47897|SYQ_HUMAN	yes	no	0	0	0	0	0	1	1	1					1		46.963	46.963	3	6.8821E-05	12761	20190821_JH_WT_Ubi	114.21	72.212	16298000	1190400	2909400	9574800	0	0	0	0	2623100	0			1664	866	1461	4655;4656;4657;4658	4890;4891;4892;4893	4892				4
GFHVIAACLTESGSTALK	Unmodified	1860.9404	0.94038322	1855	sp|Q9BPW9-3|DHRS9_HUMAN;sp|Q9BPW9|DHRS9_HUMAN;sp|Q9BPW9-4|DHRS9_HUMAN	yes	no	0	0	0	0	0		1						1		36.813	36.813	3	0.00086122	10716	20190902_JH_WT_Ubi_2	80.719	49.647	7231200	0	800980	0	0	0	0	0	6430200	0			1665	1855	1462	4659;4660	4894;4895	4895				2
GFLFGPSLAQELGLGCVLIR	Unmodified	2146.1609	0.1608811	452	sp|P07741|APT_HUMAN;sp|P07741-2|APT_HUMAN	yes	no	0	0	0	0	0								1		56.655	56.655	3	1.501E-06	16602	20190902_JH_WT_Ubi_2	111.58	74.099	1785400	0	0	0	0	0	0	0	1785400	0			1666	452	1463	4661	4896	4896				1
GFQFVSSSLPDICYR	Unmodified	1774.8349	0.83485551	1053	sp|P62633-2|CNBP_HUMAN;sp|P62633-8|CNBP_HUMAN;sp|P62633-5|CNBP_HUMAN;sp|P62633|CNBP_HUMAN;sp|P62633-4|CNBP_HUMAN;sp|P62633-6|CNBP_HUMAN	yes	no	0	0	0	0	0						1				46.515	46.515	2	0.00013949	13499	20190902_JH_MUT_Ubi_2	111.79	74.812	579610	0	0	0	0	0	579610	0	0	0			1667	1053	1464	4662	4897	4897				1
GFQQILAGEYDHLPEQAFYMVGPIEEAVAK	Oxidation (M)	3365.6278	0.62782943	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	1	0			1					1		52.301	52.301	3	2.2524E-07	15610	20190902_JH_WT_Ubi_2	92.225	69.576	4965800	0	0	2064400	0	0	0	0	2901400	0			1668	433	1465	4663;4664	4898;4899	4899			228	2
GFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDK	GlyGly (K)	4321.887	0.88696984	1111	sp|P83916|CBX1_HUMAN	yes	yes	0	0	1	0	1			1							50.759	50.759	4	0.0043489	14260	20190821_JH_WT_Ubi	40.393	20.163	3547100	0	0	3547100	0	0	0	0	0	0			1669	1111	1466	4665	4900	4900		1105		1
GFSEGLWEIENNPTVKASGYQSSQK	GlyGly (K)	2869.3519	0.35186558	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	1	0	1		1	1					1		40.059	40.059	3	1.9574E-20	9518	20190821_JH_MUT_Ubi	145.04	109.07	7199000	0	1748600	3901400	0	0	0	0	1549000	0			1670	928	1467	4666;4667;4668	4901;4902;4903;4904	4901		892		4
GFSVVADTPELQR	Unmodified	1417.7201	0.72014333	1308	sp|Q14847-3|LASP1_HUMAN;sp|Q14847|LASP1_HUMAN;sp|Q14847-2|LASP1_HUMAN	yes	no	0	0	0	0	0								1		37.937	37.937	2	0.0017855	11144	20190902_JH_WT_Ubi_2	87.568	29.135	2695500	0	0	0	0	0	0	0	2695500	0			1671	1308	1468	4669	4905	4905				0
GGAARPNGPAAGNK	Deamidation (NQ)	1237.6163	0.61634696	915	sp|P51148|RAB5C_HUMAN;sp|P51148-2|RAB5C_HUMAN	yes	no	0	1	0	0	1		1								15.343	15.343	3	0.024256	2357	20190821_JH_MUT_Ubi	79.283	43.845	1289100	0	1289100	0	0	0	0	0	0	0			1672	915	1469	4670	4906	4906	314			1
GGAAVDPDSGLEHSAHVLEK	Unmodified	1987.9599	0.95993268	496	sp|P09874|PARP1_HUMAN	yes	yes	0	0	0	0	0	1									29.227	29.227	4	0.03703	6163	20190821_JH_EV_Ubi	31.233	1.7421	1814200	1814200	0	0	0	0	0	0	0	0			1673	496	1470	4671	4907	4907				1
GGADVSGGVSAPDISLGEGHLSVK	Unmodified	2208.1022	0.10223983	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	37.899	37.899	3	4.6028E-17	9128	20190821_JH_WT_Ubi	140.95	107.59	55259000	8446400	6567400	13125000	2866200	2846100	3845200	5162600	6790500	5610000			1674	1190	1471	4672;4673;4674;4675;4676;4677;4678;4679;4680	4908;4909;4910;4911;4912;4913;4914;4915;4916	4914				9
GGAGAWLGGPAASLSPPK	Unmodified	1592.8311	0.83109076	1437	sp|Q5SXM2|SNPC4_HUMAN	yes	yes	0	0	0	0	0						1	1			40.326	40.326	2	2.2385E-05	10400	20190902_JH_MUT_Ubi_3	115.14	74.64	4033500	0	0	0	0	0	2136200	1897300	0	0			1675	1437	1472	4681;4682	4917;4918	4918				0
GGAGGAGGAGGGVYLHSQSQPSSQYR	Unmodified	2405.1108	0.11084745	2097	sp|Q9P2Q2|FRM4A_HUMAN	yes	yes	0	0	0	0	0		1	1					1		25.786	25.786	3	4.3198E-10	5006	20190821_JH_WT_Ubi	102.43	63.069	50029000	0	1583000	26203000	0	0	0	0	22244000	0			1676	2097	1473	4683;4684;4685	4919;4920;4921	4920				3
GGAGKLEVAQTQAPAATGGEAAAK	GlyGly (K)	2267.1506	0.150587	1573	sp|Q8IVF2|AHNK2_HUMAN;sp|Q8IVF2-3|AHNK2_HUMAN;sp|Q8IVF2-2|AHNK2_HUMAN	yes	no	0	0	1	0	1						1				26.3	26.3	3	6.8322E-08	6067	20190902_JH_MUT_Ubi_2	104.42	64.663	847650	0	0	0	0	0	847650	0	0	0			1677	1573	1474	4686	4922	4922		1570;1571		1
GGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGK	Deamidation (NQ)	3569.5639	0.56393664	1694	sp|Q8WUU5|GATD1_HUMAN	yes	yes	0	1	0	0	0	1	1	1			1	1	1	1	34.89	34.89	3	3.0099E-33	7828	20190821_JH_MUT_Ubi	124.04	108.28	21069000	1850500	2596200	3799300	0	0	3432100	3246300	2684300	3460100			1678	1694	1475	4687;4688;4689;4690;4691;4692;4693	4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933	4925	552;1168			11
GGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGK	2 Deamidation (NQ)	3570.548	0.54795222	1694	sp|Q8WUU5|GATD1_HUMAN	yes	yes	0	2	0	0	0						1	1			35.967	35.967	3	5.8809E-06	9717	20190902_JH_MUT_Ubi_2	61.918	30.538	1049000	0	0	0	0	0	611510	437480	0	0			1679	1694	1475	4694;4695	4934;4935	4934	552;1168			2
GGAGTGGTGSPQASLEILAPEDSQVLQQATR	Unmodified	2995.4847	0.48467067	2207	sp|Q9Y2J4-3|AMOL2_HUMAN;sp|Q9Y2J4|AMOL2_HUMAN;sp|Q9Y2J4-2|AMOL2_HUMAN;sp|Q9Y2J4-4|AMOL2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1		1	46.072	46.072	3	1.1582E-73	13350	20190902_JH_MUT_Ubi_2	201.79	141.05	144810000	20638000	28279000	25643000	6917000	8965400	19425000	19659000	0	15279000			1680	2207	1476	4696;4697;4698;4699;4700;4701;4702;4703	4936;4937;4938;4939;4940;4941;4942;4943	4940				8
GGAGTGGTGSPQASLEILAPEDSQVLQQATR	Deamidation (NQ)	2996.4687	0.46868626	2207	sp|Q9Y2J4-3|AMOL2_HUMAN;sp|Q9Y2J4|AMOL2_HUMAN;sp|Q9Y2J4-2|AMOL2_HUMAN;sp|Q9Y2J4-4|AMOL2_HUMAN	yes	no	0	1	0	0	0				1	1					46.82	46.82	3	0.00089239	11735	20190902_JH_EV_Ubi_2	68.211	33.491	2813000	0	0	0	1012200	1800800	0	0	0	0			1681	2207	1476	4704;4705	4944;4945	4944	1327;1328;1329			2
GGALLTSPSGPGYHIMLPFITTFR	Oxidation (M)	2548.3148	0.31481556	290	sp|O75477|ERLN1_HUMAN	yes	yes	0	0	0	1	0			1			1			1	50.312	50.312	3	0.010797	14364	20190902_JH_MUT_Ubi_2	49.528	25.87	18181000	0	0	9778400	0	0	700340	0	0	7702500			1682	290	1477	4706;4707;4708	4946;4947;4948	4946			132	3
GGALLTSPSGPGYHIMLPFITTFR	Unmodified	2532.3199	0.31990094	290	sp|O75477|ERLN1_HUMAN	yes	yes	0	0	0	0	0			1							52.523	52.523	3	0.022876	14842	20190821_JH_WT_Ubi	40.012	16.839	4683000	0	0	4683000	0	0	0	0	0	0			1683	290	1477	4709	4949	4949				1
GGALLTSTSGPGFHLMLPFITSYK	Unmodified	2494.293	0.29301748	321	sp|O94905-2|ERLN2_HUMAN;sp|O94905-3|ERLN2_HUMAN;sp|O94905|ERLN2_HUMAN	yes	no	0	0	0	0	0			1					1	1	52.317	52.317	3	2.0174E-06	14795	20190821_JH_WT_Ubi	89.831	57.75	30285000	0	0	23537000	0	0	0	0	3242300	3505800			1684	321	1478	4710;4711;4712	4950;4951;4952	4950				3
GGALLTSTSGPGFHLMLPFITSYK	Oxidation (M)	2510.2879	0.28793211	321	sp|O94905-2|ERLN2_HUMAN;sp|O94905-3|ERLN2_HUMAN;sp|O94905|ERLN2_HUMAN	yes	no	0	0	0	1	0									1	50.18	50.18	3	0.00097582	14664	20190902_JH_WT_Ubi_3	69.122	41.851	24144000	0	0	0	0	0	0	0	0	24144000			1685	321	1478	4713	4953	4953			147	1
GGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAK	Unmodified	3313.6062	0.60624237	2231	sp|Q9Y4B5-2|MTCL1_HUMAN;sp|Q9Y4B5-3|MTCL1_HUMAN;sp|Q9Y4B5|MTCL1_HUMAN	yes	no	0	0	0	0	0	1	1		1	1		1			44.101	44.101	3	1.0371E-12	11169	20190902_JH_EV_Ubi_3	101.87	76.07	9458100	2941400	2454900	0	1375800	1010400	0	1675600	0	0			1686	2231	1479	4714;4715;4716;4717;4718	4954;4955;4956;4957;4958	4956				5
GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK	Oxidation (M)	3388.3797	0.37973241	472	sp|P08621-2|RU17_HUMAN;sp|P08621|RU17_HUMAN;sp|P08621-4|RU17_HUMAN	yes	no	0	0	0	1	0								1		35.84	35.84	3	1.3493E-05	10439	20190902_JH_WT_Ubi_2	70.833	46.422	1532900	0	0	0	0	0	0	0	1532900	0			1687	472	1480	4719	4959	4959			274	1
GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR	Oxidation (M)	3596.6483	0.64829216	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	1	0	1	1	1	2	1	1	2	1	2	48.802	48.802	3;4	5.5248E-61	13526	20190821_JH_WT_Ubi	150.89	123.35	568430000	200590000	42103000	51533000	49622000	97506000	38303000	36626000	13501000	38642000			1688	410	1481	4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731	4960;4961;4962;4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973	4969			205	14
GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR	Unmodified	3580.6534	0.65337754	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	0	0		1	1	1	1	1	1		1	49.398	49.398	3	3.6339E-73	12065	20190902_JH_EV_Ubi_2	160.02	121.26	55030000	0	22438000	12240000	1080400	3420600	6472700	6264200	0	3113700			1689	410	1481	4732;4733;4734;4735;4736;4737;4738	4974;4975;4976;4977;4978;4979;4980;4981;4982;4983	4974				10
GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR	Unmodified	2269.0584	0.058417951	1733	sp|Q92945|FUBP2_HUMAN	yes	yes	0	0	0	0	0				1	1	1		1	1	27.101	27.101	3	2.8976E-16	7105	20190902_JH_WT_Ubi_3	114.75	68.09	18028000	0	0	0	1570800	3579800	1239800	0	5819600	5817600			1690	1733	1482	4739;4740;4741;4742;4743	4984;4985;4986;4987;4988	4988				5
GGGGSGGYYGQGGMSGGGWR	Unmodified	1803.7383	0.73832937	747	sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN	yes	no	0	0	0	0	0		1								31.354	31.354	2	1.6751E-05	6334	20190821_JH_MUT_Ubi	107.69	72.915	1112500	0	1112500	0	0	0	0	0	0	0			1691	747	1483	4744	4989	4989				1
GGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMK	Oxidation (M);2 Deamidation (NQ)	4422.6965	0.69654331	492	sp|P09651-2|ROA1_HUMAN	yes	yes	0	2	0	1	0						1				43.265	43.265	3	2.1269E-06	12456	20190902_JH_MUT_Ubi_2	64.065	50.916	0	0	0	0	0	0	0	0	0	0			1692	492	1484	4745	4990	4990	185;186;187;188		286	1
GGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMK	Oxidation (M);Deamidation (NQ)	4421.7125	0.71252772	492	sp|P09651-2|ROA1_HUMAN	yes	yes	0	1	0	1	0							1			43.144	43.144	3	6.617E-06	11405	20190902_JH_MUT_Ubi_3	54.492	41.812	745840	0	0	0	0	0	0	745840	0	0			1693	492	1484	4746	4991	4991	185;186;187;188		286	1
GGGLFLLAGPPASVETLGPR	Unmodified	1908.0469	0.046897198	1873	sp|Q9BTE6|AASD1_HUMAN;sp|Q9BTE6-2|AASD1_HUMAN;sp|Q9BTE6-3|AASD1_HUMAN	yes	no	0	0	0	0	0			1							51.211	51.211	2	0.0042161	14401	20190821_JH_WT_Ubi	67.252	29.284	1700800	0	0	1700800	0	0	0	0	0	0			1694	1873	1485	4747	4992	4992				1
GGGPTSSEQIMKTGALLLQGFIQDR	Oxidation (M);GlyGly (K)	2733.3756	0.37557791	1176	sp|Q07812-5|BAX_HUMAN;sp|Q07812-8|BAX_HUMAN;sp|Q07812|BAX_HUMAN;sp|Q07812-2|BAX_HUMAN	yes	no	0	0	1	1	1		1								48.751	48.751	3	0.0063476	12792	20190821_JH_MUT_Ubi	55.469	18.988	529670	0	529670	0	0	0	0	0	0	0			1695	1176	1486	4748	4993	4993		1165	731	1
GGHAAYSSAVNILLGHGTR	Unmodified	1879.9653	0.96529283	172	sp|O15118-2|NPC1_HUMAN;sp|O15118|NPC1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1		1	1	34.181	34.181	4	1.0267E-06	7732	20190821_JH_WT_Ubi	118.52	75.493	72262000	5203700	1261800	21538000	3162800	3205700	3774600	0	16812000	17305000			1696	172	1487	4749;4750;4751;4752;4753;4754;4755;4756	4994;4995;4996;4997;4998;4999;5000;5001	4999				8
GGHFAAFEEPELLAQDIR	Unmodified	1998.9799	0.97993985	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	0	0			1					1	1	43.113	43.113	3	0.0010338	11256	20190821_JH_WT_Ubi	78.501	42.744	8712900	0	0	5211200	0	0	0	0	1991500	1510100			1697	441	1488	4757;4758;4759	5002;5003;5004	5002				3
GGILAIASLIGVEGGNATR	Unmodified	1767.9843	0.98429694	829	sp|P42345|MTOR_HUMAN	yes	yes	0	0	0	0	0	1									52.741	52.741	3	0.012691	14181	20190821_JH_EV_Ubi	66.939	38.394	0	0	0	0	0	0	0	0	0	0			1698	829	1489	4760	5005	5005				1
GGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVR	Oxidation (M)	3940.0364	0.036415452	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN	yes	no	0	0	0	1	0		1				2			1	55.212	55.212	3;4	1.4096E-06	15207	20190902_JH_MUT_Ubi_2	72.14	53.022	33979000	0	26622000	0	0	0	6211800	0	0	1144900		+	1699	6	1490	4761;4762;4763;4764	5006;5007;5008;5009	5007			6	4
GGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVR	Unmodified	3924.0415	0.041500829	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN	yes	no	0	0	0	0	0		1	1							55.889	55.889	3	2.8844E-06	14897	20190821_JH_MUT_Ubi	68.883	48.57	19200000	0	14834000	4365400	0	0	0	0	0	0		+	1700	6	1490	4765;4766	5010;5011	5010				2
GGLKGSEVGFHGAAPDISVK	GlyGly (K)	2039.0436	0.043602734	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1					1	1				30.156	30.156	4	0.026988	7399	20190902_JH_MUT_Ubi_2	43.794	19.001	5244700	0	0	0	0	2222000	3022700	0	0	0			1701	1190	1491	4767;4768	5012;5013	5013		1201		2
GGMGSGGLATGIAGGLAGMGGIQNEK	2 Oxidation (M)	2292.0838	0.083829344	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	2	0	1		1	1	1	1	1	1	1	37.381	37.381	3	2.1183E-121	9212	20190902_JH_EV_Ubi_3	247.64	168.31	117180000	17842000	0	16137000	17497000	15117000	9495000	7956300	22462000	10676000			1702	430	1492	4769;4770;4771;4772;4773;4774;4775;4776	5014;5015;5016;5017;5018;5019;5020;5021;5022	5016			222;223	9
GGMGSGGLATGIAGGLAGMGGIQNEK	Oxidation (M)	2276.0889	0.088914722	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	1	0	1		1							39.839	39.839	3	4.204E-08	10160	20190821_JH_EV_Ubi	98.887	40.175	5120500	1902700	0	3217800	0	0	0	0	0	0			1703	430	1492	4777;4778	5023;5024	5023			222;223	2
GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR	Unmodified	3857.0238	0.023757771	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	1		1	1							40.033	40.033	5	0.033558	9866	20190821_JH_WT_Ubi	17.018	3.2752	65912000	0	29569000	36342000	0	0	0	0	0	0			1704	881	1493	4779;4780	5025;5026	5026				2
GGPGFPVCPAGGIQEVTINQSLLTPLHVEIDPEIQK	Unmodified	3809.9662	0.96621062	11	sp|P19013|K2C4_HUMAN;CON__P19013	yes	no	0	0	0	0	0		1								53.176	53.176	3	3.6964E-05	14095	20190821_JH_MUT_Ubi	62.831	49.712	4825900	0	4825900	0	0	0	0	0	0	0		+	1705	11	1494	4781	5027	5027				1
GGPGSAVSPYPTFNPSSDVAALHK	Unmodified	2355.1495	0.14952437	402	sp|P04083|ANXA1_HUMAN	yes	yes	0	0	0	0	0			1		1		1	1	1	38.371	38.371	3	9.2459E-18	10896	20190902_JH_WT_Ubi_3	145.88	114.28	144410000	0	0	47944000	0	6153600	0	5520200	51852000	32936000			1706	402	1495	4782;4783;4784;4785;4786	5028;5029;5030;5031;5032	5032				4
GGPSPLKSNSDSAR	GlyGly (K)	1485.7172	0.71718322	2252	sp|Q9Y653-5|AGRG1_HUMAN;sp|Q9Y653-4|AGRG1_HUMAN;sp|Q9Y653-2|AGRG1_HUMAN;sp|Q9Y653-3|AGRG1_HUMAN;sp|Q9Y653|AGRG1_HUMAN	yes	no	0	0	1	0	1				1	1					17.966	17.966	3	0.012751	3691	20190902_JH_EV_Ubi_3	70.628	42.615	7130500	0	0	0	4335300	2795200	0	0	0	0			1707	2252	1496	4787;4788	5033;5034	5034		2088		2
GGPVQVLEDEELKSQPEPLVVK	GlyGly (K)	2503.317	0.31698363	1226	sp|Q13228-2|SBP1_HUMAN;sp|Q13228-3|SBP1_HUMAN;sp|Q13228|SBP1_HUMAN;sp|Q13228-4|SBP1_HUMAN	yes	no	0	0	1	0	1						1				40.8	40.8	3	0.00012501	11495	20190902_JH_MUT_Ubi_2	84.208	58.798	878140	0	0	0	0	0	878140	0	0	0			1708	1226	1497	4789	5035	5035		1293		1
GGQIGLQAPGLSVSGPQGHLESGSGK	Unmodified	2417.2299	0.22989995	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	35.474	35.474	3	2.711E-10	8746	20190902_JH_MUT_Ubi_3	105.72	61.906	161440000	29147000	15104000	26962000	19687000	18389000	12016000	10718000	12134000	17278000			1709	1190	1498	4790;4791;4792;4793;4794;4795;4796;4797;4798	5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046	5042				11
GGQTHLGLPVFNTVK	Unmodified	1566.8518	0.85182621	948	sp|P53597|SUCA_HUMAN	yes	yes	0	0	0	0	0									1	35.963	35.963	3	0.01362	10134	20190902_JH_WT_Ubi_3	61.165	16.088	10016000	0	0	0	0	0	0	0	0	10016000			1710	948	1499	4799	5047;5048	5048				2
GGSCSQAACSNSAQGSDESLITCKA	GlyGly (K)	2659.0908	0.09084157	507	sp|P10321|1C07_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.625	29.625	3	1.1908E-43	8282	20190902_JH_WT_Ubi_2	179.06	151.1	39882000	4598800	3768000	3391600	7807200	4601600	5004700	4046500	2871100	3792400			1711	507	1500	4800;4801;4802;4803;4804;4805;4806;4807;4808	5049;5050;5051;5052;5053;5054;5055;5056;5057;5058	5056		498		10
GGSCSQAACSNSAQGSDESLITCKA	GlyGly (K);Deamidation (NQ)	2660.0749	0.074857155	507	sp|P10321|1C07_HUMAN	yes	yes	0	1	1	0	1						1	1			30.817	30.817	3	5.6832E-12	7301	20190902_JH_MUT_Ubi_3	113.42	76.312	496900	0	0	0	0	0	0	496900	0	0			1712	507	1500	4809;4810	5059;5060	5060	193;854	498		2
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	Unmodified	3222.2743	0.27429656	13	sp|P35527|K1C9_HUMAN;CON__P35527	yes	no	0	0	0	0	0			1							24.296	24.296	3	0.036823	4632	20190821_JH_WT_Ubi	27.022	3.7284	0	0	0	0	0	0	0	0	0	0		+	1713	13	1501	4811	5061	5061				1
GGSGSHNWGTVK	Unmodified	1185.5527	0.55268407	1637	sp|Q8NC51-4|PAIRB_HUMAN;sp|Q8NC51-3|PAIRB_HUMAN;sp|Q8NC51-2|PAIRB_HUMAN;sp|Q8NC51|PAIRB_HUMAN	yes	no	0	0	0	0	0	1		1		1	1	1	1	1	17.14	17.14	3	0.014814	2927	20190821_JH_EV_Ubi	69.65	41.442	972670000	5615400	0	264200000	0	8176000	312430000	120750000	0	261510000			1714	1637	1502	4812;4813;4814;4815;4816;4817;4818	5062;5063;5064;5065;5066;5067;5068	5062				7
GGSYTQAASSDSAQGSDVSLTACKV	GlyGly (K)	2560.1347	0.13473852	408	sp|P30455|1A36_HUMAN;sp|P30443|1A01_HUMAN;sp|P16188|1A30_HUMAN;sp|P13746|1A11_HUMAN;sp|P04439|1A03_HUMAN;sp|P13746-2|1A11_HUMAN	yes	no	0	0	1	0	1			1					1	1	33.354	33.354	3	2.6285E-43	9622	20190902_JH_WT_Ubi_2	174.25	152.44	22920000	0	0	7215700	0	0	0	0	7965200	7739100			1715	408	1503	4819;4820;4821	5069;5070;5071	5070		376		3
GGVSVAGHSLGSLILFDILSNQK	Unmodified	2311.2536	0.25359551	2266	sp|Q9Y6Y8-2|S23IP_HUMAN;sp|Q9Y6Y8|S23IP_HUMAN	yes	no	0	0	0	0	0		1	1					1		53.002	53.002	3	0.00011973	14959	20190821_JH_WT_Ubi	81.788	53.72	11473000	0	4469000	5865100	0	0	0	0	1138500	0			1716	2266	1504	4822;4823;4824	5072;5073;5074;5075	5073				4
GGVTGSPEASISGSKGDLK	GlyGly (K)	1859.9225	0.92248455	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1	1	1	26.345	26.345	3	0.0010549	5724	20190902_JH_EV_Ubi_3	78.244	32.964	40625000	4092800	3757700	0	3456400	7132600	4407200	8434200	4207600	5136800			1717	1190	1505	4825;4826;4827;4828;4829;4830;4831;4832	5076;5077;5078;5079;5080;5081;5082;5083	5078		1202		8
GGVVGIKVDK	GlyGly (K)	1084.6241	0.6240581	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	1	0	1		2	1			1	1			23.57	23.57	2;3	0.014516	4935	20190902_JH_MUT_Ubi_3	84.615	39.017	5950600	0	3162400	1883000	0	0	0	905270	0	0			1718	400	1506	4833;4834;4835;4836;4837	5084;5085;5086;5087;5088	5087		368		4
GGYYYYHNLETQEGGWDEPPNFVQNSMQLSR	Oxidation (M);Deamidation (NQ)	3695.5899	0.58994038	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	1	0	1	0			1					1		42.678	42.678	3	3.1684E-07	12775	20190902_JH_WT_Ubi_2	114.03	92.416	0	0	0	0	0	0	0	0	0	0			1719	863	1507	4838;4839	5089;5090	5090	303;304		542	2
GHAAPILYAVWAEAGFLAEAELLNLR	Unmodified	2794.4806	0.48063533	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	0					1				1	57.955	57.955	3	0.00036642	16213	20190902_JH_WT_Ubi_3	71.052	32.814	1410200	0	0	0	0	481900	0	0	0	928290			1720	715	1508	4840;4841	5091;5092	5092				2
GHAYSVTGAEEVESNGSLQK	Deamidation (NQ)	2062.9443	0.9443422	602	sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN	yes	no	0	1	0	0	0			1	1				1		28.239	28.239	3	8.957E-14	5756	20190821_JH_WT_Ubi	144.3	89.934	18313000	0	0	5822500	2329400	0	0	0	10161000	0			1721	602	1509	4842;4843;4844	5093;5094;5095;5096	5094	221			4
GHAYSVTGAKQVNYR	GlyGly (K)	1763.8703	0.87032982	447	sp|P07384|CAN1_HUMAN	yes	yes	0	0	1	0	1		1								21.954	21.954	3	0.024811	3449	20190821_JH_MUT_Ubi	57.328	24.395	657410	0	657410	0	0	0	0	0	0	0			1722	447	1510	4845	5097	5097		448		1
GHDHVLQFLVSIPSYEPQETDSLSQMETK	Oxidation (M);Deamidation (NQ)	3331.5555	0.55545235	245	sp|O60437|PEPL_HUMAN	yes	yes	0	1	0	1	0			1							45.356	45.356	3	0.012657	12169	20190821_JH_WT_Ubi	51.586	11.703	0	0	0	0	0	0	0	0	0	0			1723	245	1511	4846	5098	5098	786		105	1
GHDLNEDGLVSWEEYK	Unmodified	1889.8432	0.84317159	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-5|CALU_HUMAN;sp|O43852-10|CALU_HUMAN;sp|O43852-6|CALU_HUMAN;sp|O43852-13|CALU_HUMAN;sp|O43852-14|CALU_HUMAN;sp|O43852-11|CALU_HUMAN	yes	no	0	0	0	0	0								1	1	37.967	37.967	3	0.0017321	10738	20190902_JH_WT_Ubi_3	82.651	40.442	12163000	0	0	0	0	0	0	0	5466600	6696800			1724	225	1512	4847;4848	5099;5100	5100				2
GHFFVEDQIYCEKHAR	GlyGly (K)	2148.98	0.97995662	106	sp|O00151|PDLI1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1		1	28.411	28.411	4	1.78E-06	5428	20190821_JH_MUT_Ubi	122.66	74.257	44161000	5348300	6454600	3589200	2616700	3240000	10863000	5827800	0	6221700			1725	106	1513	4849;4850;4851;4852;4853;4854;4855;4856	5101;5102;5103;5104;5105;5106;5107;5108	5104		90		7
GHFGPINSVAFHPDGK	Unmodified	1678.8216	0.82158871	1231	sp|Q13347|EIF3I_HUMAN	yes	yes	0	0	0	0	0			1			1				30.221	30.221	3	0.0032986	6468	20190821_JH_WT_Ubi	74.296	46.327	6127600	0	0	5144300	0	0	983320	0	0	0			1726	1231	1514	4857;4858	5109;5110	5110				2
GHHIGAQSIEDDPKIMCAIHAGK	Oxidation (M)	2500.1951	0.19511113	634	sp|P20929-4|NEBU_HUMAN;sp|P20929|NEBU_HUMAN;sp|P20929-3|NEBU_HUMAN;sp|P20929-2|NEBU_HUMAN	yes	no	0	0	0	1	1								1		34.419	34.419	3	0.00095298	9936	20190902_JH_WT_Ubi_2	76.573	14.105	11314000	0	0	0	0	0	0	0	11314000	0			1727	634	1515	4859	5111	5111			387	1
GHIPYPLPPNYSYGLCPGNGTTKEEK	GlyGly (K);Deamidation (NQ)	3003.4073	0.40727197	1630	sp|Q8NBI5|S43A3_HUMAN;sp|Q8NBI5-2|S43A3_HUMAN	yes	no	0	1	1	0	1	1			1		1	1		1	37.258	37.258	3;4	0.0019783	10046	20190902_JH_MUT_Ubi_2	57.985	39.987	16255000	2699900	0	0	1749500	0	5961200	4596800	0	1247300			1728	1630	1516	4860;4861;4862;4863;4864	5112;5113;5114;5115;5116	5114	531	1628;1632		5
GHNGWVTQIATTPQFPDMILSASR	Oxidation (M);Deamidation (NQ)	2643.2751	0.27513559	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	1	0	1	0		1	2					1	1	48.098	48.098	3	5.0971E-12	14098	20190902_JH_WT_Ubi_3	126.97	79.993	14199000	0	1642500	8677200	0	0	0	0	1565300	2313600			1729	1085	1517	4865;4866;4867;4868;4869	5117;5118;5119;5120;5121	5121	353;970		670	5
GHNGWVTQIATTPQFPDMILSASR	Deamidation (NQ)	2627.2802	0.28022097	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	1	0	0	0								1		51.665	51.665	3	0.030343	15420	20190902_JH_WT_Ubi_2	43.162	13.068	0	0	0	0	0	0	0	0	0	0			1730	1085	1517	4870	5122	5122	353;970			1
GHNTNVGAIVFHPK	Unmodified	1489.779	0.77899561	193	sp|O43172-2|PRP4_HUMAN;sp|O43172|PRP4_HUMAN	yes	no	0	0	0	0	0	1		1		1			1	1	25.25	25.25	3	0.0015516	6761	20190902_JH_WT_Ubi_2	93.348	40.096	16466000	2161900	0	3948000	0	1720200	0	0	4821700	3814200			1731	193	1518	4871;4872;4873;4874;4875	5123;5124;5125;5126;5127	5126				5
GHQGFGVLSVILANHAIK	Unmodified	1860.037	0.037001214	1441	sp|Q5T4S7-3|UBR4_HUMAN;sp|Q5T4S7-4|UBR4_HUMAN;sp|Q5T4S7|UBR4_HUMAN;sp|Q5T4S7-2|UBR4_HUMAN;sp|Q5T4S7-5|UBR4_HUMAN	yes	no	0	0	0	0	0		1				1	1	1	1	41.508	41.508	3	5.2632E-12	11970	20190902_JH_WT_Ubi_3	146.1	112.79	19522000	0	3654900	0	0	0	4172000	1589300	4865000	5240800			1732	1441	1519	4876;4877;4878;4879;4880	5128;5129;5130;5131;5132	5132				5
GHSFSFHGAALTAPK	Unmodified	1526.763	0.7630112	347	sp|O95479|G6PE_HUMAN	yes	yes	0	0	0	0	0			1					1	1	27.85	27.85	3	0.00099131	5662	20190821_JH_WT_Ubi	94.717	63.489	23049000	0	0	5456900	0	0	0	0	7093900	10498000			1733	347	1520	4881;4882;4883	5133;5134;5135	5133				3
GHVDILAPTVQELAALEK	Unmodified	1903.0415	0.041477469	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN	yes	no	0	0	0	0	0			1					1		45.873	45.873	3	3.5801E-09	12352	20190821_JH_WT_Ubi	133.28	91.365	7622900	0	0	5898900	0	0	0	0	1724100	0			1734	1708	1521	4884;4885	5136;5137;5138	5137				3
GHVFEESQVAGTPMFVVK	Oxidation (M)	1976.9666	0.96659797	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	1	0					1			1		35.34	35.34	3	0.00042232	8593	20190902_JH_EV_Ubi_3	87.669	50.586	11023000	0	0	0	0	2771800	0	0	8251000	0			1735	545	1522	4886;4887	5139;5140;5141	5139			327	3
GHVFEESQVAGTPMFVVK	Unmodified	1960.9717	0.97168334	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0								1	1	38.419	38.419	3	0.00026365	10874	20190902_JH_WT_Ubi_3	91.657	60.061	6782600	0	0	0	0	0	0	0	3835100	2947500			1736	545	1522	4888;4889	5142;5143	5143				2
GHYEVTGSDDETGK	Unmodified	1493.627	0.62703081	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1							19.034	19.034	3	0.0099783	3487	20190821_JH_WT_Ubi	69.314	18.104	2093100	0	0	2093100	0	0	0	0	0	0			1737	1190	1523	4890	5144	5144				1
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	1099;448;1248	sp|P68371|TBB4B_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN;sp|Q13509-2|TBB3_HUMAN;sp|Q13509|TBB3_HUMAN	no	no	0	0	0	0	0	1		1		1			1	1	47.306	47.306	3	9.6725E-27	12936	20190821_JH_WT_Ubi	177.39	69.035	128450000	5146900	0	71425000	0	6609500	0	0	24597000	20676000			1738	1099;448;1248	1524	4891;4892;4893;4894;4895	5145;5146;5147;5148;5149	5147				5
GIAFPTSISVNNCVCHFSPLK	Unmodified	2347.1453	0.14530739	2193	sp|Q9UQ80|PA2G4_HUMAN;sp|Q9UQ80-2|PA2G4_HUMAN	yes	no	0	0	0	0	0		1	1			2	1		1	43.449	43.449	2;3	0.0021356	11075	20190821_JH_MUT_Ubi	65.765	33.2	254000000	0	62310000	88077000	0	0	39324000	32765000	0	31523000			1739	2193	1525	4896;4897;4898;4899;4900;4901	5150;5151;5152;5153;5154;5155	5150				6
GIDANEPTEGSILLKSSEK	GlyGly (K)	2101.0539	0.053892649	1548	sp|Q86UD5-2|SL9B2_HUMAN;sp|Q86UD5|SL9B2_HUMAN	yes	no	0	0	1	0	1								1		33.51	33.51	3	0.0055182	9620	20190902_JH_WT_Ubi_2	65.105	17.465	3528200	0	0	0	0	0	0	0	3528200	0			1740	1548	1526	4902	5156	5156		1543		1
GIDIHGVPYVINVTLPDEK	Unmodified	2078.1048	0.10480601	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN;sp|Q92499-2|DDX1_HUMAN	yes	no	0	0	0	0	0			1							46.666	46.666	3	5.3482E-05	12696	20190821_JH_WT_Ubi	101.08	39.979	6322800	0	0	6322800	0	0	0	0	0	0			1741	1708	1527	4903	5157	5157				1
GIDVQQVSLVINYDLPTNR	Unmodified	2143.1273	0.12733236	1001	sp|P60842|IF4A1_HUMAN;sp|Q14240|IF4A2_HUMAN;sp|Q14240-2|IF4A2_HUMAN	yes	no	0	0	0	0	0		1				1				49.982	49.982	3	1.6748E-05	13271	20190821_JH_MUT_Ubi	108.47	65.443	2102200	0	1577300	0	0	0	524910	0	0	0			1742	1001	1528	4904;4905	5158;5159	5158				2
GIEEEEILPGFILCDPNNLCHSGR	Unmodified	2768.2898	0.28979937	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|P15170|ERF3A_HUMAN	yes	no	0	0	0	0	0			1							49.071	49.071	3	7.3012E-05	13653	20190821_JH_WT_Ubi	82.8	41.848	2003500	0	0	2003500	0	0	0	0	0	0			1743	566	1529	4906	5160	5160				1
GIGIHHGGLLPILK	Unmodified	1423.8664	0.86635406	828	sp|P42285|MTREX_HUMAN	yes	yes	0	0	0	0	0						1				33.859	33.859	3	0.020908	8841	20190902_JH_MUT_Ubi_2	57.164	35.118	691270	0	0	0	0	0	691270	0	0	0			1744	828	1530	4907	5161	5161				1
GIGMGMTVPISFAVFPNEDGSLQK	2 Oxidation (M)	2526.2134	0.21344653	2016	sp|Q9NRV9|HEBP1_HUMAN	yes	yes	0	0	0	2	0								1		49.82	49.82	3	0.0069049	14928	20190902_JH_WT_Ubi_2	51.469	12.082	765970	0	0	0	0	0	0	0	765970	0			1745	2016	1531	4908	5162	5162			1085;1086	1
GIGSHCKSEGQEESFVPQSSVQPPEGDSETK	GlyGly (K)	3430.5219	0.52192039	1423	sp|Q58WW2|DCAF6_HUMAN;sp|Q58WW2-2|DCAF6_HUMAN;sp|Q58WW2-4|DCAF6_HUMAN;sp|Q58WW2-3|DCAF6_HUMAN	yes	no	0	0	1	0	1			1							29.06	29.06	4	0.0070837	6010	20190821_JH_WT_Ubi	43.986	25.67	2488700	0	0	2488700	0	0	0	0	0	0			1746	1423	1532	4909	5163	5163		1440		1
GIHEYDFEIKNVPFK	GlyGly (K)	1948.9683	0.96831253	1291	sp|Q14344-2|GNA13_HUMAN;sp|Q14344|GNA13_HUMAN	yes	no	0	0	1	0	1	1		1			1		1	1	36.639	36.639	4	0.0085051	10775	20190902_JH_WT_Ubi_2	69.229	35.046	13303000	1047700	0	3883900	0	0	1756000	0	2115100	4500700			1747	1291	1533	4910;4911;4912;4913;4914	5164;5165;5166;5167;5168	5167		1355		5
GIHFCHDLVSLCNFHNYDNLR	Unmodified	2630.1907	0.19069445	324	sp|O94925|GLSK_HUMAN;sp|O94925-3|GLSK_HUMAN	yes	no	0	0	0	0	0			1							38.369	38.369	4	6.8223E-05	9259	20190821_JH_WT_Ubi	85.046	58.608	20878000	0	0	20878000	0	0	0	0	0	0			1748	324	1534	4915	5169;5170	5169				2
GIHSAIDASQTPDVVFASILAAFSK	Unmodified	2544.3224	0.32240336	966	sp|P54819-6|KAD2_HUMAN;sp|P54819-5|KAD2_HUMAN;sp|P54819-2|KAD2_HUMAN;sp|P54819|KAD2_HUMAN	yes	no	0	0	0	0	0		1	1					1		56.02	56.02	3	2.6662E-07	16528	20190902_JH_WT_Ubi_2	97.152	71.632	23121000	0	7978700	10081000	0	0	0	0	5061200	0			1749	966	1535	4916;4917;4918	5171;5172;5173	5173				3
GIIRPGTAFELLEAQAATGYVIDPIK	Unmodified	2742.4956	0.4956167	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	1			1					1	1	52.519	52.519	3	1.512E-19	14883	20190821_JH_WT_Ubi	141.36	118.59	18435000	0	0	7921600	0	0	0	0	7996100	2517600			1750	1332	1536	4919;4920;4921	5174;5175;5176	5174				3
GIIVHTMAAVEALGAK	Unmodified	1579.8756	0.87559811	353	sp|O95573|ACSL3_HUMAN	yes	yes	0	0	0	0	0			1							39.513	39.513	3	0.014366	9747	20190821_JH_WT_Ubi	57.794	37.13	2182900	0	0	2182900	0	0	0	0	0	0			1751	353	1537	4922	5177	5177				1
GIIWGEDTLMEYLENPK	Unmodified	2006.9659	0.96592926	1119	sp|P99999|CYC_HUMAN	yes	yes	0	0	0	0	0			1							54.523	54.523	3	3.6725E-08	15647	20190821_JH_WT_Ubi	130.95	78.853	1556300	0	0	1556300	0	0	0	0	0	0			1752	1119	1538	4923	5178	5178				1
GIKTCNCETEDYGEK	GlyGly (K)	1916.788	0.78804125	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	1	0	1	1	1		1		1	1	1	1	21.063	21.063	3	5.1316E-08	4388	20190902_JH_EV_Ubi_2	143.93	109.49	20691000	2569500	2406500	0	2254500	0	3147500	4279300	3759900	2273500			1753	1128	1539	4924;4925;4926;4927;4928;4929;4930	5179;5180;5181;5182;5183;5184;5185;5186	5180		1117		8
GILENQGGKGQNTLSSDVQTNEDILK	5 Deamidation (NQ)	2762.2982	0.29815826	1981	sp|Q9HBJ7|UBP29_HUMAN	yes	yes	0	5	0	0	1				1						36.317	36.317	3	0.028538	8923	20190902_JH_EV_Ubi_2	41.491	18.495	0	0	0	0	0	0	0	0	0	0			1754	1981	1540	4931	5187	5187	628;629;1257;1258;1259			1
GILFVGSGVSGGEEGAR	Unmodified	1590.8002	0.80018457	932	sp|P52209-2|6PGD_HUMAN;sp|P52209|6PGD_HUMAN	yes	no	0	0	0	0	0		1			1					39.115	39.115	2	0.00050225	9634	20190902_JH_EV_Ubi_3	96.371	54.682	1542300	0	802210	0	0	740080	0	0	0	0			1755	932	1541	4932;4933	5188;5189	5188				0
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	Deamidation (NQ)	4036.8715	0.87151819	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	1	0	0	0	1	1	2							43.734	43.734	4	2.0642E-08	11753	20190821_JH_WT_Ubi	81.386	62.422	34265000	1811900	4589000	27864000	0	0	0	0	0	0			1756	407	1542	4934;4935;4936;4937	5190;5191;5192;5193	5193	140			4
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	Unmodified	4035.8875	0.88750261	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	42.087	42.087	4	4.727E-12	11072	20190821_JH_WT_Ubi	89.689	65.666	149710000	0	24012000	110340000	0	0	0	0	11844000	3517200			1757	407	1542	4938;4939;4940;4941	5194;5195;5196;5197;5198;5199;5200	5196				7
GILLYGPPGTGKTLIAR	GlyGly (K)	1840.0571	0.057067954	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1						1				38.595	38.595	3	0.014734	10611	20190902_JH_MUT_Ubi_2	59.709	40.877	1582400	0	0	0	0	0	1582400	0	0	0			1758	974	1543	4942	5201	5201		959		1
GINTLVTYDMVPEPK	Oxidation (M)	1691.844	0.84402321	630	sp|P20674|COX5A_HUMAN	yes	yes	0	0	0	1	0						1	1			38.97	38.97	2	0.00044824	9947	20190902_JH_MUT_Ubi_3	112.02	69.306	1830600	0	0	0	0	0	707090	1123500	0	0			1759	630	1544	4943;4944	5202;5203	5203			386	2
GINTLVTYDMVPEPK	Unmodified	1675.8491	0.84910859	630	sp|P20674|COX5A_HUMAN	yes	yes	0	0	0	0	0								1		43.701	43.701	2	3.9995E-28	13099	20190902_JH_WT_Ubi_2	188.96	128.9	4252900	0	0	0	0	0	0	0	4252900	0			1760	630	1544	4945	5204	5204				1
GIPHSASPVSPDGVQIPLKEYGR	GlyGly (K)	2517.2976	0.29758559	1487	sp|Q6PJF5-2|RHDF2_HUMAN;sp|Q6PJF5|RHDF2_HUMAN	yes	no	0	0	1	0	1	1									35.928	35.928	4	0.021156	8715	20190821_JH_EV_Ubi	43.696	25.445	1888600	1888600	0	0	0	0	0	0	0	0			1761	1487	1545	4946	5205	5205		1497		1
GISHVIVDEIHER	Unmodified	1502.7841	0.78414057	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	0			1							29.012	29.012	3	0.023939	6007	20190821_JH_WT_Ubi	57.434	25.908	1550900	0	0	1550900	0	0	0	0	0	0			1762	1182	1546	4947	5206	5206				1
GISVHISNAEPK	Unmodified	1250.6619	0.66190017	1217	sp|Q13148|TADBP_HUMAN;sp|Q13148-4|TADBP_HUMAN	yes	no	0	0	0	0	0	1		1							25.546	25.546	3	0.0088907	4996	20190821_JH_WT_Ubi	78.548	48.741	14806000	4270400	0	10536000	0	0	0	0	0	0			1763	1217	1547	4948;4949	5207;5208	5208				2
GITGVDLFGTTDAVVK	Unmodified	1591.8457	0.84573777	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	0	0	0			1							46.113	46.113	2	0.00017272	12438	20190821_JH_WT_Ubi	113.95	45.16	2601300	0	0	2601300	0	0	0	0	0	0			1764	950	1548	4950	5209	5209				0
GITINAAHVEYSTAAR	Unmodified	1672.8533	0.85328277	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1			1	1	30.651	30.651	3	2.587E-06	7061	20190902_JH_EV_Ubi_2	122.33	92.122	149640000	7492200	8747500	54030000	4772600	4519700	0	0	33083000	36992000			1765	883	1549	4951;4952;4953;4954;4955;4956;4957	5210;5211;5212;5213;5214;5215;5216;5217	5211				8
GITVTAYSPLGSPDRPWAK	Unmodified	2015.0476	0.04762548	227	sp|O60218|AK1BA_HUMAN;sp|C9JRZ8|AK1BF_HUMAN;sp|C9JRZ8-2|AK1BF_HUMAN	yes	no	0	0	0	0	1	1	1		1	1	1	1			38.908	38.908	3	2.5845E-05	9250	20190821_JH_MUT_Ubi	110.97	29.353	73029000	13620000	21711000	0	4576700	5364800	19399000	8358200	0	0			1766	227	1550	4958;4959;4960;4961;4962;4963	5218;5219;5220;5221;5222;5223;5224	5222				7
GIVDQSQQAYQEAFEISK	Unmodified	2039.98	0.97999942	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	0	0	0	0			1		1		1	1	1	43.562	43.562	2;3	3.2756E-16	11453	20190902_JH_MUT_Ubi_3	158.89	107.43	16307000	0	0	5078500	0	0	0	2278400	4408600	4541100			1767	1078;1079	1551	4964;4965;4966;4967;4968	5225;5226;5227;5228;5229	5226				5
GIVDQSQQAYQEAFEISK	Deamidation (NQ)	2040.964	0.96401501	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	1	0	0	0								1		45.243	45.243	2	1.8066E-80	13581	20190902_JH_WT_Ubi_2	238.02	188.57	4484200	0	0	0	0	0	0	0	4484200	0			1768	1078;1079	1551	4969	5230	5230	969			1
GIVLVALADGTLAIFHR	Unmodified	1765.025	0.025039544	234	sp|O60271-9|JIP4_HUMAN;sp|O60271-4|JIP4_HUMAN;sp|O60271-2|JIP4_HUMAN;sp|O60271|JIP4_HUMAN	yes	no	0	0	0	0	0			1							53.619	53.619	3	0.0034878	15269	20190821_JH_WT_Ubi	71.879	61.063	1710200	0	0	1710200	0	0	0	0	0	0			1769	234	1552	4970	5231	5231				1
GIVVTAYSPLGSPDRPWAK	Unmodified	2013.0684	0.068360922	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	1	1	1	1			1		1	1	40.134	40.134	3	1.5238E-05	10004	20190821_JH_WT_Ubi	113.67	89.136	683460000	7159800	13334000	360020000	0	0	8000800	0	148620000	146320000			1770	563	1553	4971;4972;4973;4974;4975;4976	5232;5233;5234;5235;5236;5237	5235				6
GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR	Unmodified	3261.667	0.66699213	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	2			1							43.581	43.581	4	0.016953	11417	20190821_JH_WT_Ubi	41.047	15.132	63432000	0	0	63432000	0	0	0	0	0	0			1771	563	1554	4977	5238	5238				1
GIWIPDGENVKIPVAIK	GlyGly (K)	1962.0938	0.093847391	409	sp|P04626-3|ERBB2_HUMAN;sp|P04626-2|ERBB2_HUMAN;sp|P04626-6|ERBB2_HUMAN;sp|P04626-5|ERBB2_HUMAN;sp|P04626-4|ERBB2_HUMAN;sp|P04626|ERBB2_HUMAN	yes	no	0	0	1	0	1	1	1	1							44.822	44.822	3	0.0078327	12020	20190821_JH_EV_Ubi	67.102	28.702	17634000	5016100	5471300	7146900	0	0	0	0	0	0			1772	409	1555	4978;4979;4980	5239;5240;5241	5239		378		3
GIYAYGFEKPSAIQQR	GlyGly (K)	1940.9745	0.97446054	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN;sp|Q14240|IF4A2_HUMAN;sp|Q14240-2|IF4A2_HUMAN;sp|P38919|IF4A3_HUMAN	yes	no	0	0	1	0	1							1			33.795	33.795	3	0.0097741	8316	20190902_JH_MUT_Ubi_3	67.234	39.145	1851300	0	0	0	0	0	0	1851300	0	0			1773	1001	1556	4981	5242	5242		989		1
GIYQSLEGAVQAGQLK	Unmodified	1660.8784	0.87843489	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0		1	1							42.115	42.115	3	0.0010625	10790	20190821_JH_WT_Ubi	87.363	36.704	4792100	0	487570	4304600	0	0	0	0	0	0			1774	1332	1557	4982;4983	5243;5244	5244				2
GKADGGAEYATYQTK	GlyGly (K)	1672.7693	0.76927837	572	sp|P15529-16|MCP_HUMAN;sp|P15529-7|MCP_HUMAN;sp|P15529-4|MCP_HUMAN;sp|P15529-6|MCP_HUMAN;sp|P15529-3|MCP_HUMAN;sp|P15529-5|MCP_HUMAN;sp|P15529-2|MCP_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	21.646	21.646	3	1.1265E-20	3399	20190821_JH_MUT_Ubi	171.11	108.81	110810000	3367100	3580000	21332000	3930000	0	1110900	7023800	37685000	32786000			1775	572	1558	4984;4985;4986;4987;4988;4989;4990;4991	5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255	5247		562;563		11
GKADGGAEYATYQTKSTTPAEQR	2 GlyGly (K)	2657.2318	0.23175045	572	sp|P15529-16|MCP_HUMAN;sp|P15529-7|MCP_HUMAN;sp|P15529-4|MCP_HUMAN;sp|P15529-6|MCP_HUMAN;sp|P15529-3|MCP_HUMAN;sp|P15529-5|MCP_HUMAN;sp|P15529-2|MCP_HUMAN	yes	no	0	0	2	0	2	1		2		1		1	1	1	23.304	23.304	3;4	1.7337E-06	5897	20190902_JH_WT_Ubi_3	102.24	87.933	27978000	2777100	0	5816400	0	1793600	0	1154000	9729800	6707200			1776	572	1559	4992;4993;4994;4995;4996;4997;4998	5256;5257;5258;5259;5260;5261;5262;5263	5262		562;563		8
GKDSLSDDGVDLK	GlyGly (K)	1461.6947	0.69471644	459	sp|P07948|LYN_HUMAN;sp|P07948-2|LYN_HUMAN	yes	no	0	0	1	0	1								1		26.806	26.806	3	0.0076466	7251	20190902_JH_WT_Ubi_2	81.789	44.189	1818700	0	0	0	0	0	0	0	1818700	0			1777	459	1560	4999	5264	5264		463;464		1
GKKPIEDPANDTVDFPK	GlyGly (K)	1983.9902	0.99017018	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	2	1	1				1	1			27.813	27.813	3;4	4.5537E-18	5187	20190821_JH_MUT_Ubi	161.94	114.96	14828000	1374000	3521400	0	0	0	2035900	7896700	0	0			1778	257	1561	5000;5001;5002;5003	5265;5266;5267;5268	5266		237;238;239		4
GKLEAIITPPPAK	GlyGly (K)	1447.8399	0.83986454	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1				31.494	31.494	3	0.0096438	7316	20190902_JH_EV_Ubi_3	77.894	50.925	100110000	14506000	11455000	20192000	12901000	12575000	28476000	0	0	0			1779	281	1562	5004;5005;5006;5007;5008;5009	5269;5270;5271;5272;5273;5274	5271		266		6
GKLPIVNDCDELVAIIAR	GlyGly (K)	2109.1252	0.12522387	633	sp|P20839-2|IMDH1_HUMAN;sp|P20839-4|IMDH1_HUMAN;sp|P20839|IMDH1_HUMAN;sp|P20839-3|IMDH1_HUMAN;sp|P20839-7|IMDH1_HUMAN;sp|P20839-5|IMDH1_HUMAN;sp|P20839-6|IMDH1_HUMAN	yes	no	0	0	1	0	1		1				1	1			46.468	46.468	3	9.371E-05	12288	20190902_JH_MUT_Ubi_3	104.26	69.982	5752500	0	2800600	0	0	0	1511000	1440900	0	0			1780	633	1563	5010;5011;5012	5275;5276;5277	5277		605		3
GKLPIVNEDDELVAIIAR	GlyGly (K)	2078.1372	0.13716877	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1	1	1	46.342	46.342	3	3.9805E-15	12629	20190821_JH_EV_Ubi	156.29	120.58	104330000	13212000	18881000	16428000	3926100	0	20396000	14983000	8711300	7791300			1781	533	1564	5013;5014;5015;5016;5017;5018;5019;5020	5278;5279;5280;5281;5282;5283;5284;5285;5286	5279		527		9
GKNASDMPETITSR	Oxidation (M);GlyGly (K)	1635.7522	0.75224809	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN;sp|Q8TCT9-4|HM13_HUMAN	yes	no	0	0	1	1	1				1				1	1	19.612	19.612	3	2.8741E-20	4901	20190902_JH_WT_Ubi_3	173.06	109.74	19359000	0	0	0	2134400	0	0	0	5335600	11889000			1782	1676	1565	5021;5022;5023	5287;5288;5289	5289		1674	963	3
GKNASDMPETITSR	GlyGly (K)	1619.7573	0.75733347	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN;sp|Q8TCT9-4|HM13_HUMAN	yes	no	0	0	1	0	1									1	23.89	23.89	3	0.0020234	6178	20190902_JH_WT_Ubi_3	94.673	38.867	4965800	0	0	0	0	0	0	0	0	4965800			1783	1676	1565	5024	5290	5290		1674		1
GKNCELLLVVPEEVEAHQSWR	GlyGly (K)	2606.2911	0.29112	1318	sp|Q15040|JOS1_HUMAN	yes	yes	0	0	1	0	1	1	2				1	1			41.322	41.322	3;4	2.4803E-08	10121	20190821_JH_MUT_Ubi	114.63	75.874	33260000	8418200	16074000	0	0	0	8253300	515250	0	0			1784	1318	1566	5025;5026;5027;5028;5029	5291;5292;5293;5294;5295	5292		1379		5
GKSETILSPPPEK	GlyGly (K)	1495.7882	0.7882229	2083	sp|Q9P0M6|H2AW_HUMAN	yes	yes	0	0	1	0	1	1	1			1					25.137	25.137	3	0.01974	4751	20190821_JH_EV_Ubi	67.275	20.683	3147300	830470	728410	0	0	1588400	0	0	0	0			1785	2083	1567	5030;5031;5032	5296;5297;5298	5296		1964		3
GKTIECISLIGLAVGK	GlyGly (K)	1771.9866	0.98660513	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	1	0	1			1							42.217	42.217	3	1.4538E-05	10856	20190821_JH_WT_Ubi	119.62	91.333	7401400	0	0	7401400	0	0	0	0	0	0			1786	124	1568	5033	5299	5299		111		1
GKTSLDTSNDLGPLPPGWEER	GlyGly (K)	2382.1452	0.14516727	861	sp|P46934-4|NEDD4_HUMAN;sp|P46934-3|NEDD4_HUMAN;sp|P46934-2|NEDD4_HUMAN;sp|P46934|NEDD4_HUMAN	yes	no	0	0	1	0	1		1								38.494	38.494	3	0.0098523	8927	20190821_JH_MUT_Ubi	65.784	25.269	0	0	0	0	0	0	0	0	0	0			1787	861	1569	5034	5300	5300		834		1
GKYSPTVQTR	GlyGly (K)	1249.6415	0.64149908	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1						1				18.63	18.63	3	0.023862	4120	20190902_JH_MUT_Ubi_2	71.555	27.108	1578500	0	0	0	0	0	1578500	0	0	0			1788	245	1570	5035	5301	5301		215		1
GLAEALQMEVK	Oxidation (M)	1203.6169	0.61692381	1164	sp|Q06136|KDSR_HUMAN	yes	yes	0	0	0	1	0		1								39.574	39.574	2	0.019694	9283	20190821_JH_MUT_Ubi	68.536	19.739	1226500	0	1226500	0	0	0	0	0	0	0			1789	1164	1571	5036	5302	5302			726	0
GLAEALQMEVK	Unmodified	1187.622	0.62200919	1164	sp|Q06136|KDSR_HUMAN	yes	yes	0	0	0	0	0			1							39.389	39.389	2	4.1202E-05	9671	20190821_JH_WT_Ubi	113.44	32.99	0	0	0	0	0	0	0	0	0	0			1790	1164	1571	5037	5303	5303				1
GLAEALQMEVK	Oxidation (M);Deamidation (NQ)	1204.6009	0.6009394	1164	sp|Q06136|KDSR_HUMAN	yes	yes	0	1	0	1	0									1	39.067	39.067	2	0.020377	11159	20190902_JH_WT_Ubi_3	72.848	39.657	2527500	0	0	0	0	0	0	0	0	2527500			1791	1164	1571	5038	5304	5304	1000		726	0
GLAEVQQDGEAEEGATSDGEK	Unmodified	2118.9189	0.91891531	1144	sp|Q02952-3|AKA12_HUMAN;sp|Q02952-2|AKA12_HUMAN;sp|Q02952|AKA12_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	28.415	28.415	3	1.5358E-45	7496	20190902_JH_WT_Ubi_3	188.09	138.82	38929000	5287800	2138300	4022000	4598800	3901000	2783400	2176700	7805800	6215000			1792	1144	1572	5039;5040;5041;5042;5043;5044;5045;5046;5047	5305;5306;5307;5308;5309;5310;5311;5312;5313	5313				9
GLAFIQDPDGYWIEILNPNK	Unmodified	2302.1634	0.16338352	1156	sp|Q04760-2|LGUL_HUMAN;sp|Q04760|LGUL_HUMAN	yes	no	0	0	0	0	0		1								55.763	55.763	3	2.9678E-07	14866	20190821_JH_MUT_Ubi	120.9	61.462	1628800	0	1628800	0	0	0	0	0	0	0			1793	1156	1573	5048	5314;5315	5314				2
GLAIQHPGTQVLIGTDSIPNLHK	Unmodified	2408.3176	0.31759275	1441	sp|Q5T4S7-3|UBR4_HUMAN;sp|Q5T4S7-4|UBR4_HUMAN;sp|Q5T4S7|UBR4_HUMAN;sp|Q5T4S7-2|UBR4_HUMAN	yes	no	0	0	0	0	0	1			1						37.938	37.938	3;4	6.9418E-12	9309	20190902_JH_EV_Ubi_2	123.6	94.99	12190000	11044000	0	0	1145300	0	0	0	0	0			1794	1441	1574	5049;5050	5316;5317	5317				1
GLCAIAQAESLR	Unmodified	1287.6605	0.66051996	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	0	0	0			1							35.438	35.438	2	0.0089024	8152	20190821_JH_WT_Ubi	82.494	22.327	5156500	0	0	5156500	0	0	0	0	0	0			1795	662	1575	5051	5318	5318				0
GLCGAIHSSIAK	Unmodified	1212.6285	0.62849155	784	sp|P36542-2|ATPG_HUMAN;sp|P36542|ATPG_HUMAN	yes	no	0	0	0	0	0			1					1	1	24.827	24.827	3	0.019261	4808	20190821_JH_WT_Ubi	64.224	25.264	81667000	0	0	23379000	0	0	0	0	28631000	29657000			1796	784	1576	5052;5053;5054	5319;5320;5321	5319				3
GLCGTVLIHK	Unmodified	1096.6063	0.60629955	1407	sp|Q3LXA3-2|TKFC_HUMAN;sp|Q3LXA3|TKFC_HUMAN	yes	no	0	0	0	0	0		1	1				1		1	27.547	27.547	3	0.0073842	5596	20190821_JH_WT_Ubi	91.265	68.624	19569000	0	1583900	7408600	0	0	0	3360500	0	7215600			1797	1407	1577	5055;5056;5057;5058	5322;5323;5324;5325	5324				4
GLDVDSLVIEHIQVNK	Unmodified	1777.9574	0.95741349	611	sp|P18621-2|RL17_HUMAN;sp|P18621|RL17_HUMAN;sp|P18621-3|RL17_HUMAN	yes	no	0	0	0	0	0			1							43.605	43.605	3	0.0018688	11460	20190821_JH_WT_Ubi	81.703	52.834	13230000	0	0	13230000	0	0	0	0	0	0			1798	611	1578	5059	5326	5326				1
GLEAGEESTPVALK	Unmodified	1399.7195	0.71947463	555	sp|P14616|INSRR_HUMAN	yes	yes	0	0	0	0	0							1			24.018	24.018	2	0.0039835	5189	20190902_JH_MUT_Ubi_3	86.189	26.258	1588900	0	0	0	0	0	0	1588900	0	0			1799	555	1579	5060	5327	5327				1
GLEISGTFTR	Unmodified	1079.5611	0.56112349	1192	sp|Q10567-3|AP1B1_HUMAN;sp|Q10567-2|AP1B1_HUMAN;sp|Q10567|AP1B1_HUMAN	yes	no	0	0	0	0	0			1							34.913	34.913	2	0.012144	7976	20190821_JH_WT_Ubi	91.265	50.487	2534600	0	0	2534600	0	0	0	0	0	0			1800	1192	1580	5061	5328	5328				0
GLETEKADVQLFMDDDSYSHHSGLEYADPEK	Oxidation (M);GlyGly (K)	3655.5897	0.58966561	921	sp|P51636|CAV2_HUMAN;sp|P51636-3|CAV2_HUMAN	yes	no	0	0	1	1	1	1		1		1				1	36.557	36.557	4;5	0.0010259	9004	20190902_JH_EV_Ubi_3	51.025	30.574	30416000	9093000	0	9689800	0	3450300	0	0	0	8182500			1801	921	1581	5062;5063;5064;5065	5329;5330;5331;5332	5330		887	580	4
GLETEKADVQLFMDDDSYSHHSGLEYADPEK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	3697.6002	0.60023029	921	sp|P51636|CAV2_HUMAN;sp|P51636-3|CAV2_HUMAN	yes	no	1	0	1	1	1	1									41.001	41.001	4	0.0037913	10563	20190821_JH_EV_Ubi	44.844	23.225	8696800	8696800	0	0	0	0	0	0	0	0			1802	921	1581	5066	5333	5333		887	580	1
GLETEKADVQLFMDDDSYSHHSGLEYADPEK	Acetyl (Protein N-term);GlyGly (K)	3681.6053	0.60531567	921	sp|P51636|CAV2_HUMAN;sp|P51636-3|CAV2_HUMAN	yes	no	1	0	1	0	1						1		1	1	43.64	43.64	4	5.2677E-05	12696	20190902_JH_WT_Ubi_3	70.112	48.645	5745500	0	0	0	0	0	851070	0	2446800	2447600			1803	921	1581	5067;5068;5069	5334;5335;5336	5336		887		3
GLETEKADVQLFMDDDSYSHHSGLEYADPEK	GlyGly (K)	3639.5948	0.59475098	921	sp|P51636|CAV2_HUMAN;sp|P51636-3|CAV2_HUMAN	yes	no	0	0	1	0	1			1							39.273	39.273	4	0.00088916	9629	20190821_JH_WT_Ubi	53.39	36.589	11479000	0	0	11479000	0	0	0	0	0	0			1804	921	1581	5070	5337;5338	5338		887		2
GLFIKPTVFSEVTDNMR	Oxidation (M)	1968.9979	0.9978981	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	1	1		1	1		1	1	1	1		41.094	41.094	3	7.0983E-08	11498	20190902_JH_MUT_Ubi_2	133.23	81.222	32358000	0	4280300	10130000	0	0	8578400	3763600	5605000	0			1805	865	1582	5071;5072;5073;5074;5075;5076	5339;5340;5341;5342;5343;5344;5345	5341			547	7
GLFQKEQPAGER	GlyGly (K)	1472.7372	0.73719038	2025	sp|Q9NS93|TM7S3_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			23.988	23.988	3	0.0076428	5093	20190902_JH_MUT_Ubi_3	87.184	49.216	5529600	600480	1391400	0	0	0	1946300	1591400	0	0			1806	2025	1583	5077;5078;5079;5080	5346;5347;5348;5349	5349		1928		4
GLGAVWSPTHVQVTVLQAR	Unmodified	2018.1061	0.10614341	1499	sp|Q6WKZ4-5|RFIP1_HUMAN;sp|Q6WKZ4-3|RFIP1_HUMAN;sp|Q6WKZ4|RFIP1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1			1		41.441	41.441	3	0.0001676	10806	20190821_JH_EV_Ubi	90.654	55.745	27394000	9819700	1749200	9145300	2263100	2217800	0	0	2198900	0			1807	1499	1584	5081;5082;5083;5084;5085;5086	5350;5351;5352;5353;5354;5355	5350				6
GLGFSIAGGVGNQHIPGDNSIYVTK	Unmodified	2500.271	0.27103649	1204	sp|Q12959-4|DLG1_HUMAN;sp|Q12959-2|DLG1_HUMAN;sp|Q12959-8|DLG1_HUMAN;sp|Q12959-9|DLG1_HUMAN;sp|Q12959-5|DLG1_HUMAN;sp|Q12959-3|DLG1_HUMAN;sp|Q12959-6|DLG1_HUMAN;sp|Q12959|DLG1_HUMAN;sp|Q12959-7|DLG1_HUMAN;sp|P78352-3|DLG4_HUMAN;sp|P78352|DLG4_HUMAN;sp|Q15700-3|DLG2_HUMAN;sp|P78352-2|DLG4_HUMAN;sp|Q15700|DLG2_HUMAN;sp|Q15700-4|DLG2_HUMAN;sp|Q15700-2|DLG2_HUMAN	yes	no	0	0	0	0	0		1								41.956	41.956	3	0.0013097	10293	20190821_JH_MUT_Ubi	62.589	18.893	2968600	0	2968600	0	0	0	0	0	0	0			1808	1204	1585	5087	5356	5356				1
GLGHEQGFGAPCLK	Unmodified	1469.7085	0.70853279	2115	sp|Q9UGI8-2|TES_HUMAN	yes	yes	0	0	0	0	0								1	1	29.084	29.084	3	0.018597	7708	20190902_JH_WT_Ubi_3	59.294	17.083	7002500	0	0	0	0	0	0	0	4022800	2979700			1809	2115	1586	5088;5089	5357;5358	5358				2
GLGLGIVAGSLLVK	Unmodified	1295.8177	0.81767253	280	sp|O75352-2|MPU1_HUMAN;sp|O75352|MPU1_HUMAN	yes	no	0	0	0	0	0					1					48.864	48.864	2	0.011579	12074	20190902_JH_EV_Ubi_3	73.499	50.719	2858300	0	0	0	0	2858300	0	0	0	0			1810	280	1587	5090	5359	5359				1
GLGTDEDSLIEIICSR	Unmodified	1776.8564	0.85637882	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	50.741	50.741	3	2.3109E-10	14218	20190821_JH_WT_Ubi	143.93	55.157	50960000	3159600	0	20300000	0	0	0	0	10131000	17370000			1811	446	1588	5091;5092;5093;5094	5360;5361;5362;5363	5361				4
GLGTDEESILTLLTSR	Unmodified	1703.8941	0.89414453	479	sp|P08758|ANXA5_HUMAN	yes	yes	0	0	0	0	0			1						1	53.96	53.96	3	0.0015125	15574	20190902_JH_WT_Ubi_3	84.173	36.552	3776500	0	0	2429400	0	0	0	0	0	1347100			1812	479	1589	5095;5096	5364;5365	5365				2
GLGTKEGVIIEILASR	GlyGly (K)	1769.0047	0.0046980325	550	sp|Q5VT79|AXA81_HUMAN;sp|P13928|ANXA8_HUMAN;sp|P13928-3|ANXA8_HUMAN;sp|P13928-2|ANXA8_HUMAN	yes	no	0	0	1	0	1		1								44.986	44.986	3	0.0051599	11473	20190821_JH_MUT_Ubi	73.593	42.865	3554300	0	3554300	0	0	0	0	0	0	0			1813	550	1590	5097	5366	5366		539		1
GLGVHHSGILPILK	Unmodified	1439.8613	0.86126868	1353	sp|Q15477|SKIV2_HUMAN	yes	yes	0	0	0	0	0				1	1	1	1	1	1	32.255	32.255	3	0.0051333	8107	20190902_JH_MUT_Ubi_2	77.279	54.251	12848000	0	0	0	1487900	1697200	1834900	2075900	3628500	2123700			1814	1353	1591	5098;5099;5100;5101;5102;5103	5367;5368;5369;5370;5371;5372	5369				6
GLGYSAHFVGGCLIVTSIK	Unmodified	1978.0346	0.034617952	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN	yes	no	0	0	0	0	0		1								42.153	42.153	3	0.013291	10358	20190821_JH_MUT_Ubi	52.019	28.188	1982100	0	1982100	0	0	0	0	0	0	0			1815	910	1592	5104	5373	5373				1
GLHLYGTQGNVGLTNAWSIIQTDFR	Unmodified	2760.3984	0.39836227	155	sp|O14817|TSN4_HUMAN	yes	yes	0	0	0	0	0			1					1		51.243	51.243	3	4.7763E-07	14394	20190821_JH_WT_Ubi	95.51	67.056	3150500	0	0	1619000	0	0	0	0	1531500	0			1816	155	1593	5105;5106	5374;5375	5374				2
GLHVVEVTYDDVPIPNSPFK	Unmodified	2225.1368	0.13683442	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1		1	1	44.398	44.398	3	3.647E-06	13408	20190902_JH_WT_Ubi_2	110.34	54.217	50145000	9421900	0	21695000	1927400	2026400	5598100	0	6903900	2572000			1817	282	1594	5107;5108;5109;5110;5111;5112;5113	5376;5377;5378;5379;5380;5381;5382	5381				7
GLIAAICAGPTALLAHEIGFGSK	Unmodified	2266.2144	0.21437323	1835	sp|Q99497|PARK7_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1	1	1	51.254	51.254	3	1.3658E-06	13928	20190821_JH_EV_Ubi	97.256	68.373	374980000	47060000	115770000	102280000	0	3091700	31858000	23479000	18542000	32909000			1818	1835	1595	5114;5115;5116;5117;5118;5119;5120;5121	5383;5384;5385;5386;5387;5388;5389;5390	5383				8
GLKAGVLSQADYLNLVQCETLEDLK	GlyGly (K)	2890.4746	0.47462326	1024	sp|P61421|VA0D1_HUMAN	yes	yes	0	0	1	0	1		1								48.627	48.627	3	0.028105	12756	20190821_JH_MUT_Ubi	40.533	13.213	1770000	0	1770000	0	0	0	0	0	0	0			1819	1024	1596	5122	5391	5391		1007		1
GLLGALTSTPYSPTQHLER	Unmodified	2040.064	0.064003825	2035	sp|Q9NUQ9|FA49B_HUMAN	yes	yes	0	0	0	0	0					1					39.865	39.865	3	0.022091	10004	20190902_JH_EV_Ubi_3	46.249	20.011	1480000	0	0	0	0	1480000	0	0	0	0			1820	2035	1597	5123	5392	5392				1
GLLSDSMTDVPVDTGVAAR	Oxidation (M)	1918.9306	0.93060639	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN	yes	no	0	0	0	1	0				1						39.392	39.392	2	0.0015878	9816	20190902_JH_EV_Ubi_2	85.837	39.485	1256400	0	0	0	1256400	0	0	0	0	0			1821	202	1598	5124	5393	5393			81	1
GLLSDSMTDVPVDTGVAAR	Unmodified	1902.9357	0.93569177	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN	yes	no	0	0	0	0	0									1	43.601	43.601	2	2.211E-13	12702	20190902_JH_WT_Ubi_3	142.1	90.818	2010200	0	0	0	0	0	0	0	0	2010200			1822	202	1598	5125	5394	5394				1
GLMVITGSESPIVVVLSGSMEPAFHR	2 Oxidation (M)	2744.3877	0.3877225	1091	sp|P67812-2|SC11A_HUMAN;sp|P67812-4|SC11A_HUMAN;sp|P67812|SC11A_HUMAN;sp|P67812-3|SC11A_HUMAN	yes	no	0	0	0	2	0	1			1						49.412	49.412	3	0.00054588	12027	20190902_JH_EV_Ubi_2	69.088	23.719	3599400	3147100	0	0	452300	0	0	0	0	0			1823	1091	1599	5126;5127	5395;5396	5396			673;674	2
GLNTIPLFVQLLYSPIENIQR	Unmodified	2427.3526	0.35258127	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	0	0	0		1	1					1		57.863	57.863	3	1.1438E-22	16811	20190902_JH_WT_Ubi_2	157.62	129.28	5180100	0	447520	1409300	0	0	0	0	3323200	0			1824	770	1600	5128;5129;5130	5397;5398;5399;5400	5400				4
GLPAHSTESVKSTGQQGR	GlyGly (K)	1952.9664	0.96641505	1524	sp|Q7RTX9-2|MOT14_HUMAN;sp|Q7RTX9|MOT14_HUMAN	yes	no	0	0	1	0	1	1			1	1		1		1	18.679	18.679	3;4	0.00075992	3929	20190902_JH_MUT_Ubi_3	84.859	48.83	39824000	9104300	0	0	15914000	11820000	0	1151900	0	1834100			1825	1524	1601	5131;5132;5133;5134;5135	5401;5402;5403;5404;5405	5404		1517		5
GLQAQIASSGLTVEVDAPK	Unmodified	1883	6.5851E-06	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	0	0		2								41.722	41.722	2;3	3.8231E-19	10213	20190821_JH_MUT_Ubi	158.45	106.72	23779000	0	23779000	0	0	0	0	0	0	0			1826	430	1602	5136;5137	5406;5407	5406				1
GLQPGEEELPDISPPIVIPDDSKDR	GlyGly (K)	2829.4032	0.40323245	1737	sp|Q92995-2|UBP13_HUMAN;sp|Q92995|UBP13_HUMAN	yes	no	0	0	1	0	1	1			1	1	1				45.737	45.737	3	5.7104E-12	11537	20190902_JH_EV_Ubi_3	111.24	84.616	19464000	8194900	0	0	2766600	2652100	5850000	0	0	0			1827	1737	1603	5138;5139;5140;5141	5408;5409;5410;5411;5412	5410		1727		5
GLQSGVDIGVK	Unmodified	1071.5924	0.59242362	1832	sp|Q99439|CNN2_HUMAN	yes	yes	0	0	0	0	0	1		1							31.482	31.482	2	0.0046645	6766	20190821_JH_WT_Ubi	99.788	35.221	4680600	1100600	0	3580000	0	0	0	0	0	0			1828	1832	1604	5142;5143	5413;5414	5414				0
GLQVHVVVDACSSR	Unmodified	1525.7671	0.7671103	1754	sp|Q96AB3-2|ISOC2_HUMAN;sp|Q96AB3|ISOC2_HUMAN;sp|Q96AB3-3|ISOC2_HUMAN	yes	no	0	0	0	0	0	1		1							29.848	29.848	3	0.005682	6244	20190821_JH_WT_Ubi	75.483	47.517	6449100	1458000	0	4991200	0	0	0	0	0	0			1829	1754	1605	5144;5145	5415;5416	5416				2
GLSDEQIHTILQVLGHVAK	Unmodified	2057.1269	0.12693843	1761	sp|Q96BH1|RNF25_HUMAN	yes	yes	0	0	0	0	0	1									48.888	48.888	3	7.4636E-07	13313	20190821_JH_EV_Ubi	120.39	88.297	870660	870660	0	0	0	0	0	0	0	0			1830	1761	1606	5146	5417;5418	5418				2
GLSEAAGQTAQMLER	Oxidation (M)	1576.7515	0.75151981	333	sp|O95239-2|KIF4A_HUMAN;sp|O95239|KIF4A_HUMAN	yes	no	0	0	0	1	0						1				31.342	31.342	2	0.025719	7888	20190902_JH_MUT_Ubi_2	74.237	30.818	1244800	0	0	0	0	0	1244800	0	0	0			1831	333	1607	5147	5419	5419			156	1
GLSEDTTEETLK	Unmodified	1321.6249	0.62490554	618	sp|P19338|NUCL_HUMAN	yes	yes	0	0	0	0	0			1							27.735	27.735	2	0.032566	5606	20190821_JH_WT_Ubi	57.149	18.127	24373000	0	0	24373000	0	0	0	0	0	0			1832	618	1608	5148	5420	5420				0
GLSNHFQVNHTVALSTIGESNYHFGVTYVGTK	Unmodified	3476.7113	0.71131656	370	sp|O96008|TOM40_HUMAN;sp|O96008-2|TOM40_HUMAN	yes	no	0	0	0	0	0			1							38.761	38.761	4	0.028271	9406	20190821_JH_WT_Ubi	37.942	16.919	7824500	0	0	7824500	0	0	0	0	0	0			1833	370	1609	5149	5421	5421				0
GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR	Unmodified	3518.6174	0.61743295	378	sp|P00441|SODC_HUMAN	yes	yes	0	0	0	0	0	1	1		1		1	2	1	1	32.301	32.301	4;5	2.6579E-09	9013	20190902_JH_MUT_Ubi_3	92.225	75.559	242080000	19590000	16283000	0	2617400	0	28472000	10620000	67959000	96541000			1834	378	1610	5150;5151;5152;5153;5154;5155;5156;5157	5422;5423;5424;5425;5426;5427;5428;5429;5430	5427				9
GLTSVINQKLK	GlyGly (K)	1313.7667	0.76669959	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1	1	30.443	30.443	3	0.00049818	7376	20190902_JH_MUT_Ubi_2	129.85	33.818	322700000	1767700	36494000	63712000	0	1722400	53061000	65062000	58503000	42378000			1835	442	1611	5158;5159;5160;5161;5162;5163;5164;5165	5431;5432;5433;5434;5435;5436;5437;5438	5434		435		8
GLVAVITGGASGLGLATAER	Unmodified	1812.0105	0.010511692	1843	sp|Q99714|HCD2_HUMAN;sp|Q99714-2|HCD2_HUMAN	yes	no	0	0	0	0	0		1	2	1	1	1	1	1	1	47.673	47.673	2;3	5.6885E-277	13126	20190821_JH_WT_Ubi	354.99	288.72	31541000	0	1908700	23702000	766480	891180	981270	1049400	2242100	0			1836	1843	1612	5166;5167;5168;5169;5170;5171;5172;5173;5174	5439;5440;5441;5442;5443;5444;5445;5446;5447	5445				8
GLVEPVDVVDNADGTQTVNYVPSR	Unmodified	2543.2504	0.25036063	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	44.02	44.02	3	5.7563E-23	13268	20190902_JH_WT_Ubi_2	147.75	111.07	48405000	2117500	0	15167000	1555700	2250900	0	0	12287000	15027000			1837	637	1613	5175;5176;5177;5178;5179;5180	5448;5449;5450;5451;5452;5453	5452				6
GLVETAAHLGYSVVAINHIVDFK	Unmodified	2452.3114	0.31144474	1104	sp|P78346|RPP30_HUMAN;sp|P78346-2|RPP30_HUMAN	yes	no	0	0	0	0	0								1	1	48.982	48.982	3	0.00024218	14324	20190902_JH_WT_Ubi_3	75.912	53.902	3944200	0	0	0	0	0	0	0	2815100	1129100			1838	1104	1614	5181;5182	5454;5455	5455				2
GLVLIAFSQYLQQCPFDEHVK	Unmodified	2491.257	0.25696633	5	CON__P02769	yes	yes	0	0	0	0	0		1	1			1	1	1		52.031	52.031	3	1.6428E-08	13835	20190821_JH_MUT_Ubi	115.2	92.025	32445000	0	11047000	9098500	0	0	1983800	1373400	8942800	0		+	1839	5	1615	5183;5184;5185;5186;5187	5456;5457;5458;5459;5460;5461	5456				6
GLVNLQSGAPKPEENPSLNIQFK	Unmodified	2479.3071	0.30708764	2211	sp|Q9Y2T2|AP3M1_HUMAN	yes	yes	0	0	0	0	1	1		1							40.175	40.175	3	2.1756E-12	9990	20190821_JH_WT_Ubi	134.83	95.305	12021000	2598500	0	9422300	0	0	0	0	0	0			1840	2211	1616	5188;5189	5462;5463	5463				2
GLVQALQTKVTQQGLK	GlyGly (K)	1825.0421	0.042146171	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	1	0	1		1								37.417	37.417	3	0.035605	8623	20190821_JH_MUT_Ubi	48.405	22.424	4233000	0	4233000	0	0	0	0	0	0	0			1841	881	1617	5190	5464	5464		859		1
GLVSTLQSATEQMAATVAGSVR	Oxidation (M)	2192.1107	0.11069602	1480	sp|Q6P2E9-2|EDC4_HUMAN;sp|Q6P2E9|EDC4_HUMAN	yes	no	0	0	0	1	0	1				1					44.028	44.028	3	4.5682E-16	11204	20190902_JH_EV_Ubi_3	142.27	97.538	5501900	4254100	0	0	0	1247800	0	0	0	0			1842	1480	1618	5191;5192	5465;5466	5466			904	2
GLVSTLQSATEQMAATVAGSVR	Unmodified	2176.1158	0.1157814	1480	sp|Q6P2E9-2|EDC4_HUMAN;sp|Q6P2E9|EDC4_HUMAN	yes	no	0	0	0	0	0	1									53.945	53.945	3	8.4808E-07	14431	20190821_JH_EV_Ubi	99.407	53.286	2809800	2809800	0	0	0	0	0	0	0	0			1843	1480	1618	5193	5467	5467				1
GLVVLGFPCNQFGHQENAK	Unmodified	2114.0367	0.036743217	443	sp|P07203|GPX1_HUMAN	yes	yes	0	0	0	0	0								1		40.386	40.386	3	0.022242	11950	20190902_JH_WT_Ubi_2	46.156	21.102	19418000	0	0	0	0	0	0	0	19418000	0			1844	443	1619	5194	5468	5468				1
GLWIPEGEKVK	GlyGly (K)	1368.7402	0.74015049	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1								1		32.178	32.178	3	0.036416	9126	20190902_JH_WT_Ubi_2	60.434	16.921	7117800	0	0	0	0	0	0	0	7117800	0			1845	382	1620	5195	5469	5469				1
GLYQGFNVSVQGIIIYR	Unmodified	1926.0363	0.036332512	423	sp|P05141|ADT2_HUMAN	no	no	0	0	0	0	0	1									50.522	50.522	2	0.0021768	13759	20190821_JH_EV_Ubi	81.647	49.149	1394300	1394300	0	0	0	0	0	0	0	0			1846	423	1621	5196	5470	5470				1
GMAEGHHAVNIEGLK	Oxidation (M)	1577.762	0.76202492	1300	sp|Q14678-2|KANK1_HUMAN;sp|Q14678|KANK1_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1		22.173	22.173	3	0.0024437	4865	20190902_JH_MUT_Ubi_2	85.163	54.094	28469000	0	3038600	4397300	0	0	7619800	7334600	6078700	0			1847	1300	1622	5197;5198;5199;5200;5201	5471;5472;5473;5474;5475;5476	5472			812	6
GMAEGHHAVNIEGLK	Unmodified	1561.7671	0.7671103	1300	sp|Q14678-2|KANK1_HUMAN;sp|Q14678|KANK1_HUMAN	yes	no	0	0	0	0	0						1				24.33	24.33	3	0.032211	5484	20190902_JH_MUT_Ubi_2	45.825	15.89	3691100	0	0	0	0	0	3691100	0	0	0			1848	1300	1622	5202	5477	5477				1
GMAIFTPVICGVGGNLVAIQTSR	Oxidation (M)	2376.2294	0.22937137	1781	sp|Q96GZ6-8|S41A3_HUMAN;sp|Q96GZ6-6|S41A3_HUMAN;sp|Q96GZ6-7|S41A3_HUMAN;sp|Q96GZ6-4|S41A3_HUMAN;sp|Q96GZ6-3|S41A3_HUMAN;sp|Q96GZ6-5|S41A3_HUMAN;sp|Q96GZ6-9|S41A3_HUMAN;sp|Q96GZ6-2|S41A3_HUMAN;sp|Q96GZ6|S41A3_HUMAN	yes	no	0	0	0	1	0	1									50.635	50.635	3	0.0064382	13766	20190821_JH_EV_Ubi	56.247	32.564	558670	558670	0	0	0	0	0	0	0	0			1849	1781	1623	5203	5478	5478			1002	1
GMGGHGYGGAGDASSGFHGGHFVHMR	2 Oxidation (M)	2574.0666	0.066556571	747	sp|P31942-4|HNRH3_HUMAN;sp|P31942-3|HNRH3_HUMAN;sp|P31942-2|HNRH3_HUMAN;sp|P31942|HNRH3_HUMAN;sp|P31942-6|HNRH3_HUMAN;sp|P31942-5|HNRH3_HUMAN	yes	no	0	0	0	2	0							1		1	21.383	21.383	3	5.8543E-05	5436	20190902_JH_WT_Ubi_3	82.034	63.332	7639900	0	0	0	0	0	0	605270	0	7034700			1850	747	1624	5204;5205	5479;5480	5480			466;467	2
GMGSGQLQNLGAAVAILGGPGTVQGVVR	Oxidation (M)	2622.3912	0.3911684	145	sp|O14618|CCS_HUMAN	yes	yes	0	0	0	1	0									1	49.924	49.924	3	0.0042955	14619	20190902_JH_WT_Ubi_3	59.661	19.757	0	0	0	0	0	0	0	0	0	0			1851	145	1625	5206	5481	5481			63	1
GMNFSVVVFDTAPTGHTLR	Unmodified	2048.0149	0.014945143	212	sp|O43681|ASNA_HUMAN	yes	yes	0	0	0	0	0		1	1							43.642	43.642	3	0.0044232	11418	20190821_JH_WT_Ubi	63.374	37.816	7403000	0	1638300	5764700	0	0	0	0	0	0			1852	212	1626	5207;5208	5482;5483	5483				2
GMSLNLEPDNVGVVVFGNDK	Unmodified	2103.0307	0.030654786	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	0	0	0	0		1								50.112	50.112	2	0.00047374	13220	20190821_JH_MUT_Ubi	83.292	40.503	1325800	0	1325800	0	0	0	0	0	0	0			1853	680	1627	5209	5484	5484				1
GMTLVTPLQLLLFASK	Oxidation (M)	1746.9954	0.9953789	1182	sp|Q08211|DHX9_HUMAN;sp|Q08211-2|DHX9_HUMAN	yes	no	0	0	0	1	0			1							56.094	56.094	3	1.1239E-66	16070	20190821_JH_WT_Ubi	230.67	209.32	3843000	0	0	3843000	0	0	0	0	0	0			1854	1182	1628	5210	5485	5485			739	1
GMTTLLSSLGAQCVIASR	Oxidation (M)	1879.9496	0.94956769	1383	sp|Q16698-2|DECR_HUMAN;sp|Q16698|DECR_HUMAN	yes	no	0	0	0	1	0			1					1	1	43.673	43.673	3	0.00030856	12669	20190902_JH_WT_Ubi_3	92.236	51.221	7198600	0	0	3242900	0	0	0	0	1897800	2057900			1855	1383	1629	5211;5212;5213	5486;5487;5488	5488			858	3
GMTTLLSSLGAQCVIASR	Unmodified	1863.9547	0.95465307	1383	sp|Q16698-2|DECR_HUMAN;sp|Q16698|DECR_HUMAN	yes	no	0	0	0	0	0			1							47.784	47.784	3	9.0177E-09	13154	20190821_JH_WT_Ubi	130.4	81.85	2403200	0	0	2403200	0	0	0	0	0	0			1856	1383	1629	5214	5489	5489				1
GNAMVEEGHFAAEDVK	Oxidation (M)	1718.757	0.75699912	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	1	0									1	25.799	25.799	3	0.033684	6703	20190902_JH_WT_Ubi_3	46.964	12.52	2755400	0	0	0	0	0	0	0	0	2755400			1857	1262	1630	5215	5490	5490				1
GNFGGSFAGSFGGAGGHAPGVAR	Unmodified	2033.9456	0.94562002	933	sp|P52272-2|HNRPM_HUMAN;sp|P52272|HNRPM_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	33.972	33.972	3	2.6408E-22	8205	20190902_JH_MUT_Ubi_3	149.72	121.17	710870000	158070000	46380000	79577000	105420000	81091000	57558000	35141000	86378000	61255000			1858	933	1631	5216;5217;5218;5219;5220;5221;5222;5223;5224	5491;5492;5493;5494;5495;5496;5497;5498;5499	5496				9
GNIELASSEPQHFTTTVTR	Unmodified	2087.0283	0.028346601	2187	sp|Q9UPQ0-9|LIMC1_HUMAN;sp|Q9UPQ0-8|LIMC1_HUMAN;sp|Q9UPQ0-6|LIMC1_HUMAN;sp|Q9UPQ0-5|LIMC1_HUMAN;sp|Q9UPQ0-10|LIMC1_HUMAN;sp|Q9UPQ0-2|LIMC1_HUMAN;sp|Q9UPQ0-4|LIMC1_HUMAN;sp|Q9UPQ0|LIMC1_HUMAN;sp|Q9UPQ0-3|LIMC1_HUMAN	yes	no	0	0	0	0	0	1									32.846	32.846	3	0.00085117	7509	20190821_JH_EV_Ubi	76.526	24.801	1578100	1578100	0	0	0	0	0	0	0	0			1859	2187	1632	5225	5500	5500				1
GNMGVSSGLELLTLPHGHHLR	Oxidation (M)	2240.1484	0.14841893	1865	sp|Q9BRG2-2|SH23A_HUMAN;sp|Q9BRG2|SH23A_HUMAN	yes	no	0	0	0	1	0	1									34.383	34.383	4	0.0016113	8111	20190821_JH_EV_Ubi	68.525	24.727	4521900	4521900	0	0	0	0	0	0	0	0			1860	1865	1633	5226	5501	5501			1024	1
GNMGVSSGLELLTLPHGHHLR	Unmodified	2224.1535	0.15350431	1865	sp|Q9BRG2-2|SH23A_HUMAN;sp|Q9BRG2|SH23A_HUMAN	yes	no	0	0	0	0	0						1				35.579	35.579	4	0.036928	9510	20190902_JH_MUT_Ubi_2	30.863	5.5441	1564300	0	0	0	0	0	1564300	0	0	0			1861	1865	1633	5227	5502	5502				1
GNPGFSGLNLNIPILSSLGSSAPSESHPSDFQR	Unmodified	3381.6589	0.65894664	1449	sp|Q5VT52-5|RPRD2_HUMAN;sp|Q5VT52-2|RPRD2_HUMAN;sp|Q5VT52-3|RPRD2_HUMAN;sp|Q5VT52|RPRD2_HUMAN	yes	no	0	0	0	0	0						1				52.112	52.112	3	8.5005E-05	14736	20190902_JH_MUT_Ubi_2	62.67	42.215	412810	0	0	0	0	0	412810	0	0	0			1862	1449	1634	5228	5503	5503				1
GNRPVILTYHDIGMNHK	Oxidation (M)	1980	0.99996378	1714	sp|Q92597|NDRG1_HUMAN	yes	yes	0	0	0	1	1			1					1		25.46	25.46	4	0.010909	6809	20190902_JH_WT_Ubi_2	57.788	33.946	22422000	0	0	7578400	0	0	0	0	14843000	0			1863	1714	1635	5229;5230	5504;5505	5505			974	2
GNSFSPWKPPPK	2 GlyGly (K);Deamidation (NQ)	1569.7576	0.75759147	1495	sp|Q6UY09-4|CEA20_HUMAN;sp|Q6UY09-3|CEA20_HUMAN;sp|Q6UY09-2|CEA20_HUMAN;sp|Q6UY09-5|CEA20_HUMAN;sp|Q6UY09|CEA20_HUMAN	yes	no	0	1	2	0	1			1							39.546	39.546	2	0.036441	9748	20190821_JH_WT_Ubi	41.427	8.3383	794190	0	0	794190	0	0	0	0	0	0			1864	1495	1636	5231	5506	5506	473			0
GNTSGSHIVNHLVR	Unmodified	1489.775	0.77497287	1732	sp|Q92900-2|RENT1_HUMAN;sp|Q92900|RENT1_HUMAN	yes	no	0	0	0	0	0			1					1	1	20.902	20.902	3	0.0048139	3883	20190821_JH_WT_Ubi	78.324	47.841	25109000	0	0	5492200	0	0	0	0	9932100	9684600			1865	1732	1637	5232;5233;5234	5507;5508;5509	5507				3
GNVQVVIPFLTESYSSSQDPPEK	Unmodified	2520.2384	0.23839896	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1			1	50.109	50.109	3	2.086E-07	13675	20190821_JH_EV_Ubi	105.95	61.358	9572500	2100300	2077400	0	672320	806460	1396100	0	0	2519900			1866	651	1638	5235;5236;5237;5238;5239;5240	5510;5511;5512;5513;5514;5515;5516	5510				7
GNVQVVIPFLTESYSSSQDPPEKSIPICTLK	GlyGly (K)	3546.7916	0.7916003	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	1		1	1			1	1		1	49.722	49.722	3	5.1423E-11	14229	20190902_JH_MUT_Ubi_2	100.95	73.814	71644000	0	17521000	32923000	0	0	8117500	4099700	0	8982800			1867	651	1639	5241;5242;5243;5244;5245	5517;5518;5519;5520;5521;5522	5518		623		6
GPAFNMASPESDFGINLKGPK	Oxidation (M);GlyGly (K)	2306.1001	0.10013134	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	1	1						1				37.767	37.767	3	1.5653E-05	10284	20190902_JH_MUT_Ubi_2	91.547	59.357	938870	0	0	0	0	0	938870	0	0	0			1868	1190	1640	5246	5523	5523		1203	747	1
GPAPGSKPVQFMDFEGK	Oxidation (M);GlyGly (K)	1920.904	0.90399771	1695	sp|Q8WUX1|S38A5_HUMAN	yes	yes	0	0	1	1	1		1		1	1	1	1			31.208	31.208	3	4.6025E-05	7338	20190902_JH_MUT_Ubi_3	110.84	63.237	44050000	0	9112200	0	2191700	3481000	11977000	17288000	0	0			1869	1695	1641	5247;5248;5249;5250;5251	5524;5525;5526;5527;5528;5529	5529		1689	970	6
GPAPGSKPVQFMDFEGK	GlyGly (K)	1904.9091	0.90908309	1695	sp|Q8WUX1|S38A5_HUMAN	yes	yes	0	0	1	0	1		1				1				35.374	35.374	3	0.0021939	9285	20190902_JH_MUT_Ubi_2	79.471	52.742	12707000	0	4679200	0	0	0	8027500	0	0	0			1870	1695	1641	5252;5253	5530;5531	5531		1689		2
GPDGYDPQFITKLLRNYR	2 Deamidation (NQ)	2154.0746	0.074568512	1987	sp|Q9HCE1-2|MOV10_HUMAN;sp|Q9HCE1|MOV10_HUMAN	yes	no	0	2	0	0	2	1									37.043	37.043	3	0.036018	9108	20190821_JH_EV_Ubi	59.261	7.7657	2348500	2348500	0	0	0	0	0	0	0	0			1871	1987	1642	5254	5532	5532	632			1
GPDVKLEGPDVSLK	GlyGly (K)	1566.8253	0.82533668	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			32.812	32.812	3	0.0025076	8210	20190902_JH_MUT_Ubi_2	90.759	56.373	4331500	886270	1237700	0	0	0	2207600	0	0	0			1872	1190	1643	5255;5256;5257;5258	5533;5534;5535;5536	5535		1204;1205		4
GPENPQVEVLSEEEGEEEEEEEDILSLAEEKYRPAALEK	GlyGly (K)	4556.109	0.10896709	1511	sp|Q70CQ2-3|UBP34_HUMAN;sp|Q70CQ2-2|UBP34_HUMAN;sp|Q70CQ2|UBP34_HUMAN	yes	no	0	0	1	0	2		1								49.574	49.574	4	0.00020914	13030	20190821_JH_MUT_Ubi	50.733	32.416	873870	0	873870	0	0	0	0	0	0	0			1873	1511	1644	5259	5537	5537		1511		1
GPFVEAEVPDVDLECPDAK	GlyGly (K)	2199.9994	0.99941424	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	0						1				44.041	44.041	2	0.0028301	12707	20190902_JH_MUT_Ubi_2	84.892	44.826	587510	0	0	0	0	0	587510	0	0	0			1874	1190	1645	5260	5538	5538		1206		0
GPGGNEDGPQKLDSEADAEPQDLESTNLLESEAPR	GlyGly (K)	3778.7042	0.70417809	1798	sp|Q96LD4|TRI47_HUMAN;sp|Q96LD4-2|TRI47_HUMAN	yes	no	0	0	1	0	1		1		1	1	1				40.033	40.033	3	2.7882E-08	11156	20190902_JH_MUT_Ubi_2	86.727	54.125	2965100	0	1133400	0	821520	456640	553610	0	0	0			1875	1798	1646	5261;5262;5263;5264	5539;5540;5541;5542	5542		1760		4
GPIVPLNVADQKLLEASTQFQK	GlyGly (K)	2509.354	0.35403784	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			46.24	46.24	3	1.4098E-05	12226	20190902_JH_MUT_Ubi_3	87.228	71.502	15835000	3218700	4256100	0	1407000	1665200	3043100	2245000	0	0			1876	970	1647	5265;5266;5267;5268;5269;5270	5543;5544;5545;5546;5547;5548	5548		944		6
GPLIAPGPDGAPAKGDGPVGLGTPGGR	GlyGly (K)	2494.2928	0.29283456	869	sp|P48029|SC6A8_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1	1		1	35.951	35.951	3	1.4401E-05	8819	20190902_JH_EV_Ubi_2	85.913	62.584	21378000	3714400	0	0	3121800	4340100	3411500	3172800	0	3617200			1877	869	1648	5271;5272;5273;5274;5275;5276	5549;5550;5551;5552;5553;5554	5550		848		6
GPNCVIRGVTAK	Deamidation (NQ)	1271.6656	0.66560534	89	sp|A6NHR9-2|SMHD1_HUMAN;sp|A6NHR9|SMHD1_HUMAN	yes	no	0	1	0	0	1							1			21.074	21.074	3	0.020651	4517	20190902_JH_MUT_Ubi_3	69.672	17.909	0	0	0	0	0	0	0	0	0	0			1878	89	1649	5277	5555	5555	34			1
GPPCGPVNCNEKIVVLLQR	GlyGly (K)	2263.1565	0.15654078	1167	sp|Q06323-3|PSME1_HUMAN;sp|Q06323|PSME1_HUMAN;sp|Q06323-2|PSME1_HUMAN	yes	no	0	0	1	0	1		1								38.5	38.5	3	0.0068027	8902	20190821_JH_MUT_Ubi	62.813	38.1	2684500	0	2684500	0	0	0	0	0	0	0			1879	1167	1650	5278	5556	5556		1157		1
GPPHSKSGGGTGEEPGSQGLNGEAGPEDSTR	GlyGly (K);Deamidation (NQ)	3063.3402	0.34019128	180	sp|O15355|PPM1G_HUMAN	yes	yes	0	1	1	0	1		1	1	1	1	2	2	1		22.619	22.619	3;4	2.8776E-05	4745	20190902_JH_EV_Ubi_2	80.355	56.442	11052000	0	932410	1289300	2237900	881270	2262400	1809600	1639200	0			1880	180	1651	5279;5280;5281;5282;5283;5284;5285;5286;5287	5557;5558;5559;5560;5561;5562;5563;5564;5565;5566	5557	66;772	152		10
GPPQEEEEEEDEEEEATKEDAEAPGIR	GlyGly (K)	3155.3174	0.31744973	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	1	0	1	1	1	1	1			1		1	31.454	31.454	3	2.1992E-139	7392	20190902_JH_MUT_Ubi_3	260.48	234.21	15013000	1456700	2799600	2346700	1262900	0	0	3246400	0	3900800			1881	928	1652	5288;5289;5290;5291;5292;5293	5567;5568;5569;5570;5571;5572;5573;5574	5571		893		8
GPPQEEEEEEDEEEEATKEDAEAPGIR	Unmodified	3041.2745	0.27452228	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	0	0	1			1							31.271	31.271	3	0.0087508	6737	20190821_JH_WT_Ubi	58.812	42.346	832700	0	0	832700	0	0	0	0	0	0			1882	928	1652	5294	5575	5575				1
GPQLAAQNLGISLANLLLSK	Unmodified	2020.1681	0.16807497	466	sp|P08397-4|HEM3_HUMAN;sp|P08397-3|HEM3_HUMAN;sp|P08397-2|HEM3_HUMAN;sp|P08397|HEM3_HUMAN	yes	no	0	0	0	0	0		1								55.426	55.426	3	5.675E-14	14801	20190821_JH_MUT_Ubi	142.72	118.17	1151300	0	1151300	0	0	0	0	0	0	0			1883	466	1653	5295	5576	5576				1
GPQVDVKGPFVEAEVPDVDLECPDAK	GlyGly (K)	2923.391	0.39095321	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1				43.259	43.259	3	6.163E-11	12453	20190902_JH_MUT_Ubi_2	110.36	76.201	1399200	0	0	0	0	0	1399200	0	0	0			1884	1190	1654	5296	5577	5577		1206;1207		1
GPSLQGDLAVSGDIKCPK	GlyGly (K)	1954.9782	0.97822529	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								33.105	33.105	3	0.02969	6986	20190821_JH_MUT_Ubi	55.589	22.855	0	0	0	0	0	0	0	0	0	0			1885	1190	1655	5297	5578	5578		1208		1
GPSSVEDIK	Unmodified	930.46583	0.46582612	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	0	0		1								22.847	22.847	2	0.019378	3608	20190821_JH_MUT_Ubi	90.37	41.011	0	0	0	0	0	0	0	0	0	0			1886	438	1656	5298	5579	5579				1
GPTVGGGLPGIGVQGLEGNLQMPGIK	Oxidation (M)	2461.2999	0.29989378	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	1	0						1	1			46.232	46.232	3	4.2114E-10	12275	20190902_JH_MUT_Ubi_3	104.23	63.849	2567900	0	0	0	0	0	1580800	987100	0	0			1887	1190	1657	5299;5300	5580;5581	5581			748	2
GPVSGTEPEPVYSMEAADYR	Oxidation (M)	2169.9525	0.95246405	1287	sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN	yes	no	0	0	0	1	0								1		34.224	34.224	3	0.0032346	9891	20190902_JH_WT_Ubi_2	66.874	40.092	1122900	0	0	0	0	0	0	0	1122900	0			1888	1287	1658	5301	5582	5582			801	1
GPVTNAAILLAPVSMLSSDFRPSLPLPHFNK	Oxidation (M)	3304.7642	0.76420376	1881	sp|Q9BV38|WDR18_HUMAN	yes	yes	0	0	0	1	1		1								53.087	53.087	4	0.0035408	14065	20190821_JH_MUT_Ubi	47.35	16.862	2741800	0	2741800	0	0	0	0	0	0	0			1889	1881	1659	5302	5583	5583			1030	1
GQASQITASNLVQNYKK	2 GlyGly (K);2 Deamidation (NQ)	2079.0233	0.023261223	1867	sp|Q9BRX5-2|PSF3_HUMAN;sp|Q9BRX5|PSF3_HUMAN;sp|Q9BRX5-3|PSF3_HUMAN	yes	no	0	2	2	0	1						1				35.255	35.255	3	0.024636	9383	20190902_JH_MUT_Ubi_2	46.319	6.7876	1611700	0	0	0	0	0	1611700	0	0	0			1890	1867	1660	5303	5584	5584	595;1219	1813;1814		1
GQAVPASKTGILEESMAR	Oxidation (M);GlyGly (K)	1973.984	0.98403894	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	1	1		1				1	1			28.583	28.583	3	0.00037064	6805	20190902_JH_MUT_Ubi_2	94.203	63.309	11822000	0	2342500	0	0	0	6162200	3317400	0	0			1891	1614	1661	5304;5305;5306	5585;5586;5587	5586		1609	941	3
GQDHCGIESEVVAGIPR	Unmodified	1822.8632	0.86319553	454	sp|P07858|CATB_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	34.861	34.861	3	8.4929E-08	7923	20190821_JH_WT_Ubi	125.39	73.66	101980000	1516500	0	40710000	0	0	0	0	30644000	29110000			1892	454	1662	5307;5308;5309;5310	5588;5589;5590;5591	5589				4
GQELAAMACELQAQK	Oxidation (M);Deamidation (NQ)	1663.7546	0.75455628	245	sp|O60437|PEPL_HUMAN	yes	yes	0	1	0	1	0						1				29.934	29.934	2	0.020629	7310	20190902_JH_MUT_Ubi_2	51.979	25.861	567480	0	0	0	0	0	567480	0	0	0			1893	245	1663	5311	5592	5592	787		106	1
GQELIYAGMPITEVFK	Oxidation (M)	1810.9175	0.91752251	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	0	1	0			1							46.237	46.237	2	1.6217E-09	12515	20190821_JH_WT_Ubi	142.97	91.099	2277600	0	0	2277600	0	0	0	0	0	0			1894	946	1664	5312	5593	5593			591	1
GQFHEYQESTIGAAFLTQTVCLDDTTVK	Unmodified	3158.4866	0.48664451	915	sp|P51148|RAB5C_HUMAN;sp|P51148-2|RAB5C_HUMAN	yes	no	0	0	0	0	0			1							46.556	46.556	3	0.00011201	12639	20190821_JH_WT_Ubi	72.881	48.968	3301300	0	0	3301300	0	0	0	0	0	0			1895	915	1665	5313	5594	5594				1
GQGTASSGNVSDLAQTVKTFDNLK	GlyGly (K)	2551.2514	0.25142326	250	sp|O60503|ADCY9_HUMAN	yes	yes	0	0	1	0	1		1								41.176	41.176	3	0.00073175	9967	20190821_JH_MUT_Ubi	71.946	42.562	984590	0	984590	0	0	0	0	0	0	0			1896	250	1666	5314	5595	5595		227		1
GQHVPGSPFQFTVGPLGEGGAHK	Unmodified	2303.1447	0.14471376	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	no	no	0	0	0	0	0				1	1	1		1	2	36.853	36.853	3;4	7.8237E-08	9103	20190902_JH_EV_Ubi_3	109.37	65.816	237630000	0	0	0	12413000	15948000	6159600	0	101860000	101240000			1897	637	1667	5315;5316;5317;5318;5319;5320	5596;5597;5598;5599;5600;5601	5597				5
GQHVPGSPFQFTVGPLGEGGAHK	Deamidation (NQ)	2304.1287	0.12872935	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	no	no	0	1	0	0	0								1		38.107	38.107	4	0.0065853	11207	20190902_JH_WT_Ubi_2	61.862	40.328	5793900	0	0	0	0	0	0	0	5793900	0			1898	637	1667	5321	5602	5602	874			1
GQHVTGSPFQFTVGPLGEGGAHK	Unmodified	2307.1396	0.13962838	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0	1		1	1				1		36.146	36.146	3;4	7.4356E-30	8437	20190821_JH_WT_Ubi	166.21	118.46	104730000	47629000	0	25188000	6191100	0	0	0	25720000	0			1899	282	1668	5322;5323;5324;5325	5603;5604;5605;5606	5605				4
GQHVTGSPFQFTVGPLGEGGAHK	Deamidation (NQ)	2308.1236	0.12364397	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	1	0	0	0						1				36.226	36.226	4	0.027569	9784	20190902_JH_MUT_Ubi_2	42.309	14.813	1887300	0	0	0	0	0	1887300	0	0	0			1900	282	1668	5326	5607	5607	796			0
GQKVLDSGAPIK	GlyGly (K)	1325.7303	0.73031409	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	1	0	1		1								21.22	21.22	3	0.029719	3281	20190821_JH_MUT_Ubi	62.466	8.7151	2456800	0	2456800	0	0	0	0	0	0	0			1901	433	1669	5327	5608	5608		424		1
GQLEALQVDGGR	Unmodified	1241.6364	0.6364137	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0	1	1								31.918	31.918	2	1.6657E-12	6528	20190821_JH_MUT_Ubi	170.04	113.61	3001400	1254100	1747400	0	0	0	0	0	0	0		+	1902	8;19	1670	5328;5329	5609;5610	5610				1
GQPFWLTLHFEGR	Unmodified	1586.7994	0.7993967	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	45.031	45.031	3	0.00012287	11999	20190821_JH_WT_Ubi	122.46	75.397	183840000	0	26478000	117580000	0	0	0	0	21332000	18447000			1903	645	1671	5330;5331;5332;5333	5611;5612;5613;5614	5612				4
GQSMFVENKAFSMDEPVAAK	2 Oxidation (M);GlyGly (K)	2331.0511	0.051132232	2004	sp|Q9NQ84|GPC5C_HUMAN;sp|Q9NQ84-2|GPC5C_HUMAN	yes	no	0	0	1	2	1	1	1		1	1	1	1	1	1	31.067	31.067	3	1.621E-18	7249	20190902_JH_EV_Ubi_2	152.13	112.22	32668000	5363000	1600300	0	6919600	7076300	3500300	2319600	2126000	3763100			1904	2004	1672	5334;5335;5336;5337;5338;5339;5340;5341	5615;5616;5617;5618;5619;5620;5621;5622	5616		1917	1079;1080	8
GQSMFVENKAFSMDEPVAAK	Oxidation (M);GlyGly (K)	2315.0562	0.05621761	2004	sp|Q9NQ84|GPC5C_HUMAN;sp|Q9NQ84-2|GPC5C_HUMAN	yes	no	0	0	1	1	1		1		1		1	1			34.353	34.353	3	0.0011325	8956	20190902_JH_MUT_Ubi_2	75.319	53.837	3887900	0	816400	0	1001700	0	897930	1171800	0	0			1905	2004	1672	5342;5343;5344;5345	5623;5624;5625;5626	5625		1917	1079;1080	4
GQSPLDLCPDPNLCKALAK	GlyGly (K)	2210.0824	0.082372781	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1		1				1	1			39.38	39.38	3	0.00014135	9411	20190821_JH_MUT_Ubi	96.153	66.731	25610000	0	9153900	0	0	0	4836000	11620000	0	0			1906	1570	1673	5346;5347;5348	5627;5628;5629	5627		1557;1558		3
GQVAKLEAALGEAK	GlyGly (K)	1497.8151	0.81510635	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1		1				1	1			32.012	32.012	3	2.8406E-11	6716	20190821_JH_MUT_Ubi	157.33	97.08	10147000	0	2732300	0	0	0	3855900	3558800	0	0			1907	390;391	1674	5349;5350;5351	5630;5631;5632	5630		359		3
GQVGGEINVEMDAAPGVDLSR	Oxidation (M)	2129.0059	0.005896599	15	CON__Q04695;sp|Q04695|K1C17_HUMAN;CON__Q9QWL7	yes	no	0	0	0	1	0			1							38.665	38.665	2	0.010749	9386	20190821_JH_WT_Ubi	66.568	19.613	2430900	0	0	2430900	0	0	0	0	0	0		+	1908	15	1675	5352	5633	5633			22	1
GQVGGQVSVEVDSAPGTDLAK	Unmodified	2013.0015	0.0014631481	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0		1		1	1	1	1		1	35.596	35.596	3	2.815E-09	8162	20190821_JH_MUT_Ubi	121.82	76.38	28862000	0	6139000	0	1765800	1886700	9038900	3308800	0	6722600		+	1909	7;477	1676	5353;5354;5355;5356;5357;5358	5634;5635;5636;5637;5638;5639;5640	5636				7
GQVGGQVSVEVDSAPGTDLAK	Deamidation (NQ)	2013.9855	0.98547873	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	0	0	0					1			1		36.518	36.518	2	1.8872E-28	8956	20190902_JH_EV_Ubi_3	160.03	113.04	10081000	0	0	0	0	3320100	0	0	6760500	0		+	1910	7;477	1676	5359;5360	5641;5642	5641	714			2
GQVGPGAGPLELEGVKVPLEPGPK	GlyGly (K)	2438.3169	0.31692405	1468	sp|Q6EMK4|VASN_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1	1			41.886	41.886	3	4.0642E-31	10558	20190902_JH_EV_Ubi_2	170.02	112.5	103050000	37265000	0	0	15603000	11491000	24466000	14229000	0	0			1911	1468	1677	5361;5362;5363;5364;5365	5643;5644;5645;5646;5647;5648	5645		1479		6
GQVGPGAGPLELEGVKVPLEPGPK	GlyGly (K);Deamidation (NQ)	2439.3009	0.30093963	1468	sp|Q6EMK4|VASN_HUMAN	yes	yes	0	1	1	0	1		1								42.265	42.265	3	0.0012062	10468	20190821_JH_MUT_Ubi	78.352	43.176	22695000	0	22695000	0	0	0	0	0	0	0			1912	1468	1677	5366	5649	5649	1082	1479		1
GQVLFDLVCEHLNLLEK	Unmodified	2026.0557	0.055747325	1953	sp|Q9H4G0|E41L1_HUMAN;sp|Q9H4G0-4|E41L1_HUMAN;sp|Q9H4G0-2|E41L1_HUMAN	yes	no	0	0	0	0	0		1	1							51.21	51.21	3	0.015166	14363	20190821_JH_WT_Ubi	54.501	24.865	3890000	0	903230	2986800	0	0	0	0	0	0			1913	1953	1678	5367;5368	5650;5651	5651				2
GQYISPFHDIPIYADK	Unmodified	1862.9203	0.9202997	1334	sp|Q15181|IPYR_HUMAN	yes	yes	0	0	0	0	0			1						1	41.002	41.002	3	0.0025862	10421	20190821_JH_WT_Ubi	76.728	42.333	12619000	0	0	8663000	0	0	0	0	0	3955800			1914	1334	1679	5369;5370	5652;5653	5652				2
GRLPQLSAAIALVGGISQQLQER	Unmodified	2404.355	0.35504089	285	sp|O75382-4|TRIM3_HUMAN;sp|O75382-3|TRIM3_HUMAN;sp|O75382-2|TRIM3_HUMAN;sp|O75382|TRIM3_HUMAN	yes	no	0	0	0	0	1		1								52.652	52.652	3	0.0012619	13929	20190821_JH_MUT_Ubi	77.469	39.051	523200	0	523200	0	0	0	0	0	0	0			1915	285	1680	5371	5654	5654				1
GRPIVSASASLTIFPAMFNPEER	Oxidation (M);Deamidation (NQ)	2506.2526	0.25260923	473	sp|P08648|ITA5_HUMAN	yes	yes	0	1	0	1	1			1							44.41	44.41	3	0.029711	11783	20190821_JH_WT_Ubi	47.991	16.173	3299900	0	0	3299900	0	0	0	0	0	0			1916	473	1681	5372	5655	5655	178		275	1
GSDEPPVFLEIHYK	Unmodified	1629.8039	0.80387296	711	sp|P28838-2|AMPL_HUMAN;sp|P28838|AMPL_HUMAN	yes	no	0	0	0	0	0			1					1		39.719	39.719	3	0.024608	9781	20190821_JH_WT_Ubi	53.754	10.669	6812100	0	0	4383600	0	0	0	0	2428500	0			1917	711	1682	5373;5374	5656;5657	5656				2
GSDHSASLEPGELAELVR	Unmodified	1865.9119	0.91191986	2010	sp|Q9NR45|SIAS_HUMAN	yes	yes	0	0	0	0	0				1					1	40.024	40.024	3	0.011695	11495	20190902_JH_WT_Ubi_3	55.912	28.263	2700000	0	0	0	1032400	0	0	0	0	1667600			1918	2010	1683	5375;5376	5658;5659	5659				2
GSESHKMIDLSGNPVLR	Oxidation (M);GlyGly (K)	1968.9687	0.96872323	149	sp|O14735-3|CDIPT_HUMAN;sp|O14735|CDIPT_HUMAN	yes	no	0	0	1	1	1				1						28.12	28.12	4	0.014382	6321	20190902_JH_EV_Ubi_2	55.186	12.368	689270	0	0	0	689270	0	0	0	0	0			1919	149	1684	5377	5660	5660		122	67	1
GSEVGFHGAAPDISVK	Unmodified	1569.7787	0.77872084	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0		1	1							31.438	31.438	3	0.0026464	6733	20190821_JH_WT_Ubi	76.311	42.128	7289800	0	1124700	6165100	0	0	0	0	0	0			1920	1190	1685	5378;5379	5661;5662	5662				2
GSGGEWKGPQVSSALNLDTSK	GlyGly (K)	2231.0818	0.081838734	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			34.713	34.713	3	0.001896	8667	20190902_JH_MUT_Ubi_3	70.072	44.248	2321200	0	0	0	0	0	0	2321200	0	0			1921	1190	1686	5380	5663	5663		1209		1
GSGGTAEHPFTVEEFVLPK	Unmodified	2000.9844	0.98435652	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	0	0			1					1	1	41.141	41.141	3	4.7458E-18	10420	20190821_JH_WT_Ubi	151.11	121	47996000	0	0	21581000	0	0	0	0	13599000	12816000		+	1922	0	1687	5381;5382;5383	5664;5665;5666	5664				3
GSGHPAYAEVEPVGEKEGFIVSEQC	GlyGly (K)	2789.2603	0.26027338	1493	sp|Q6UX71-3|PXDC2_HUMAN;sp|Q6UX71-2|PXDC2_HUMAN;sp|Q6UX71|PXDC2_HUMAN	yes	no	0	0	1	0	1		1								37.217	37.217	3	0.018377	8579	20190821_JH_MUT_Ubi	45.511	22.772	831790	0	831790	0	0	0	0	0	0	0			1923	1493	1688	5384	5667	5667		1501		1
GSGKGEEVEAGAAK	GlyGly (K)	1402.6688	0.66883604	1296	sp|Q14573|ITPR3_HUMAN	yes	yes	0	0	1	0	1	1									16.521	16.521	3	0.015215	2740	20190821_JH_EV_Ubi	68.168	18.817	206570	206570	0	0	0	0	0	0	0	0			1924	1296	1689	5385	5668	5668		1357		1
GSGQGDSLYPVGYLDKQVPDTSVQETDR	GlyGly (K)	3124.4585	0.4585155	1427	sp|Q5J8M3-3|EMC4_HUMAN;sp|Q5J8M3-2|EMC4_HUMAN;sp|Q5J8M3|EMC4_HUMAN	yes	no	0	0	1	0	1			1							39.933	39.933	3	1.017E-10	9950	20190821_JH_WT_Ubi	105.17	69.886	2237400	0	0	2237400	0	0	0	0	0	0			1925	1427	1690	5386	5669;5670	5670		1442		2
GSGTEEANEDMEEQQQPMYQPTPTKDK	2 Oxidation (M);GlyGly (K)	3213.335	0.33503082	2129	sp|Q9UHI5|LAT2_HUMAN;sp|Q9UHI5-3|LAT2_HUMAN;sp|Q9UHI5-2|LAT2_HUMAN;sp|Q9UHI5-4|LAT2_HUMAN	yes	no	0	0	1	2	1	1		1	1	1		1			24.435	24.435	3	4.7893E-44	5207	20190902_JH_EV_Ubi_2	172.3	155.83	14082000	4615600	0	1578900	3070500	4318600	0	498420	0	0			1926	2129	1691	5387;5388;5389;5390;5391	5671;5672;5673;5674;5675;5676	5672		1999;2000	1123;1124	6
GSGTEEANEDMEEQQQPMYQPTPTKDK	Oxidation (M);GlyGly (K)	3197.3401	0.3401162	2129	sp|Q9UHI5|LAT2_HUMAN;sp|Q9UHI5-3|LAT2_HUMAN;sp|Q9UHI5-2|LAT2_HUMAN;sp|Q9UHI5-4|LAT2_HUMAN	yes	no	0	0	1	1	1	1									26.727	26.727	3	0.026322	5195	20190821_JH_EV_Ubi	41.16	28.854	485460	485460	0	0	0	0	0	0	0	0			1927	2129	1691	5392	5677	5677		1999;2000	1123;1124	1
GSGTEEANEDMEEQQQPMYQPTPTKDK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3214.319	0.31904641	2129	sp|Q9UHI5|LAT2_HUMAN;sp|Q9UHI5-3|LAT2_HUMAN;sp|Q9UHI5-2|LAT2_HUMAN;sp|Q9UHI5-4|LAT2_HUMAN	yes	no	0	1	1	2	1				1	1					24.841	24.841	3	4.8605E-21	5332	20190902_JH_EV_Ubi_2	145.14	132.82	2280600	0	0	0	987800	1292800	0	0	0	0			1928	2129	1691	5393;5394	5678;5679	5678	1300;1301	1999;2000	1123;1124	2
GSHQISLDNPDYQQDFFPK	Unmodified	2235.0233	0.023261223	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	0	0	0	1		1		1					38.893	38.893	3	5.4345E-09	9604	20190902_JH_EV_Ubi_3	125.51	74.048	9676700	2907000	0	5746700	0	1023000	0	0	0	0			1929	382	1692	5395;5396;5397	5680;5681;5682	5681				3
GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR	Unmodified	3713.8788	0.8788354	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	0	0		1	1			1		1	1	52.038	52.038	3	1.3844E-07	15094	20190902_JH_WT_Ubi_3	80.583	59.849	49349000	0	4375000	29685000	0	0	1165900	0	6204000	7919100			1930	433	1693	5398;5399;5400;5401;5402	5683;5684;5685;5686;5687	5687				5
GSKDKEAIQAYSESLMTSAPK	GlyGly (K);Deamidation (NQ)	2355.1264	0.12640567	1690	sp|Q8WTV0-3|SCRB1_HUMAN;sp|Q8WTV0-4|SCRB1_HUMAN;sp|Q8WTV0-2|SCRB1_HUMAN	yes	no	0	1	1	0	2									1	21.619	21.619	3	0.036398	5517	20190902_JH_WT_Ubi_3	49.528	8.046	0	0	0	0	0	0	0	0	0	0			1931	1690	1694	5403	5688	5688		1682		1
GSLLIDSSTIDPAVSK	Unmodified	1601.8512	0.85121708	745	sp|P31937|3HIDH_HUMAN	yes	yes	0	0	0	0	0			1							41.666	41.666	2	0.0011554	10613	20190821_JH_WT_Ubi	99.5	39.592	2703100	0	0	2703100	0	0	0	0	0	0			1932	745	1695	5404	5689	5689				0
GSMAGSTGVHDTVVNQLLSK	Oxidation (M)	2015.9946	0.99460363	855	sp|P46459-2|NSF_HUMAN;sp|P46459|NSF_HUMAN	yes	no	0	0	0	1	0			1							33.692	33.692	3	0.0063499	7531	20190821_JH_WT_Ubi	61.015	26.071	4376200	0	0	4376200	0	0	0	0	0	0			1933	855	1696	5405	5690	5690			540	1
GSMPAYSGNNMDKSDSELNSEVAAR	2 Oxidation (M);GlyGly (K)	2775.1712	0.17120038	1419	sp|Q53TN4-3|CYBR1_HUMAN;sp|Q53TN4|CYBR1_HUMAN	yes	no	0	0	1	2	1		1		1	1					26.709	26.709	3	2.847E-07	5837	20190902_JH_EV_Ubi_3	96.504	70.569	6126000	0	1022200	0	3196400	1907300	0	0	0	0			1934	1419	1697	5406;5407;5408	5691;5692;5693	5692		1439	869;870	3
GSQAQPDSPSAQLALIAASQSFLQPGGK	Unmodified	2753.3984	0.39842185	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0								1	1	52.378	52.378	3	0.0049267	15664	20190902_JH_WT_Ubi_2	48.626	22.102	4841500	0	0	0	0	0	0	0	1936900	2904600			1935	2230	1698	5409;5410	5694;5695	5694				2
GSQNKSKPLQVYYR	2 GlyGly (K);2 Deamidation (NQ)	1896.933	0.93298965	494	sp|P09693|CD3G_HUMAN	yes	yes	0	2	2	0	2					1	1	1			33.797	33.797	3	0.0071918	8786	20190902_JH_MUT_Ubi_2	82.85	30.479	74910000	0	0	0	0	30770000	22688000	21452000	0	0			1936	494	1699	5411;5412;5413	5696;5697;5698	5697	189;843;844	484;485		3
GSSLPGKPTSPHNGQDPPAPPVD	GlyGly (K)	2365.1299	0.12985156	1811	sp|Q96QK8|SIM14_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1				28.63	28.63	3	0.0083966	6750	20190902_JH_MUT_Ubi_2	54.834	22.743	12763000	2767000	1970600	2681800	2218900	0	3125200	0	0	0			1937	1811	1700	5414;5415;5416;5417;5418	5699;5700;5701;5702;5703	5702		1778		5
GSSLPGKPTSPHNGQDPPAPPVD	GlyGly (K);Deamidation (NQ)	2366.1139	0.11386714	1811	sp|Q96QK8|SIM14_HUMAN	yes	yes	0	1	1	0	1			1					1		29.637	29.637	3	0.0065329	6206	20190821_JH_WT_Ubi	78.418	50.699	3093500	0	0	3093500	0	0	0	0	0	0			1938	1811	1700	5419;5420	5704;5705	5704	579	1778		2
GSSQPNLSTSHSEQEYGKAGGSPASYHGSTSPR	GlyGly (K)	3461.5468	0.54683001	332	sp|O95208-3|EPN2_HUMAN;sp|O95208-2|EPN2_HUMAN	yes	no	0	0	1	0	1			1						1	23.314	23.314	4	6.8816E-07	4389	20190821_JH_WT_Ubi	76.41	49.268	5732700	0	0	4023600	0	0	0	0	0	1709100			1939	332	1701	5421;5422	5706;5707	5706		309		2
GSSSASIVKGQHEMSEMDGR	2 Oxidation (M);GlyGly (K)	2237.9641	0.96410814	1276	sp|Q14126|DSG2_HUMAN	yes	yes	0	0	1	2	1	1	1		1		1	1			18.012	18.012	3	1.1061E-05	2760	20190821_JH_MUT_Ubi	106.28	80.933	9599400	2072900	591700	0	3043700	0	1767000	2124100	0	0			1940	1276	1702	5423;5424;5425;5426;5427	5708;5709;5710;5711;5712	5710		1341	793;794	5
GSSVVAYEGQSWHDYCFHCK	Unmodified	2416.0001	9.97146E-05	1258	sp|Q13642-1|FHL1_HUMAN;sp|Q13642-5|FHL1_HUMAN;sp|Q13642-4|FHL1_HUMAN	yes	no	0	0	0	0	0			1							32.697	32.697	3	0.00087091	7171	20190821_JH_WT_Ubi	74.338	58.215	5802000	0	0	5802000	0	0	0	0	0	0			1941	1258	1703	5428	5713	5713				1
GSSYKLLVEQAK	GlyGly (K)	1435.7671	0.76709352	2008	sp|Q9NR09|BIRC6_HUMAN	yes	yes	0	0	1	0	1		1					1		1	28.333	28.333	3	0.008499	6355	20190902_JH_MUT_Ubi_3	85.672	43.197	15649000	0	5196800	0	0	0	0	6807600	0	3644400			1942	2008	1704	5429;5430;5431	5714;5715;5716	5715		1919		3
GSTHPQPGVSPPAAPAAPGPK	Unmodified	1919.9854	0.98535957	324	sp|O94925|GLSK_HUMAN;sp|O94925-3|GLSK_HUMAN;sp|O94925-2|GLSK_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	26.717	26.717	3	0.00086699	5296	20190821_JH_WT_Ubi	72.676	32.399	9914400	587550	0	2559000	0	0	0	0	4123700	2644200			1943	324	1705	5432;5433;5434;5435	5717;5718;5719;5720	5718				4
GSTTATFAAVVLYVENER	Unmodified	1926.9687	0.96870646	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	0	0	0	0			2					1		52.05	52.05	2;3	1.4867E-08	14643	20190821_JH_WT_Ubi	127.3	65.22	8806700	0	0	7488400	0	0	0	0	1318200	0			1944	525	1706	5436;5437;5438	5721;5722;5723	5722				3
GSYGDLGGPIITTQVTIPK	Unmodified	1916.0255	0.025493054	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1			1	44.794	44.794	3	3.914E-07	12102	20190821_JH_EV_Ubi	121.72	74.216	15591000	2986500	1950200	0	2843700	2456100	2446200	0	0	2908600			1945	1033	1707	5439;5440;5441;5442;5443;5444	5724;5725;5726;5727;5728;5729;5730;5731	5724				8
GTADVTHDLQEMKEESR	Oxidation (M);GlyGly (K)	2074.9226	0.9225609	520	sp|P11166|GTR1_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	24.546	24.546	3;4	5.4617E-42	4546	20190821_JH_EV_Ubi	201.16	166.78	191460000	23828000	5124100	34804000	27734000	23251000	12600000	10571000	27654000	25898000			1946	520	1708	5445;5446;5447;5448;5449;5450;5451;5452;5453	5732;5733;5734;5735;5736;5737;5738;5739;5740	5732		521	310	9
GTADVTHDLQEMKEESR	GlyGly (K)	2058.9276	0.92764628	520	sp|P11166|GTR1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1		1	1	31.066	31.066	3;4	1.7452E-42	8402	20190902_JH_WT_Ubi_3	204.67	139.11	117630000	19542000	8595000	29017000	8201500	8581000	9460100	0	15722000	18515000			1947	520	1708	5454;5455;5456;5457;5458;5459;5460;5461	5741;5742;5743;5744;5745;5746;5747;5748	5748		521		8
GTAEGAVDAMLLHGQDVITVSNGGR	Oxidation (M);Deamidation (NQ)	2484.1915	0.19146554	1623	sp|Q8N766-3|EMC1_HUMAN;sp|Q8N766-2|EMC1_HUMAN;sp|Q8N766|EMC1_HUMAN	yes	no	0	1	0	1	0		1								39.72	39.72	3	0.0092332	9329	20190821_JH_MUT_Ubi	57.188	26.77	839380	0	839380	0	0	0	0	0	0	0			1948	1623	1709	5462	5749	5749	527		946	1
GTAQYSSQKSVEER	GlyGly (K)	1682.786	0.78599106	1853	sp|Q99959-2|PKP2_HUMAN;sp|Q99959|PKP2_HUMAN	yes	no	0	0	1	0	1						1				18.688	18.688	3	0.029224	4130	20190902_JH_MUT_Ubi_2	57.328	29.045	1684500	0	0	0	0	0	1684500	0	0	0			1949	1853	1710	5463	5750	5750		1809		1
GTDDSMTLQSQK	Oxidation (M)	1325.5769	0.57690949	126	sp|O00422|SAP18_HUMAN	yes	yes	0	0	0	1	0			1							18.867	18.867	2	3.0934E-16	3448	20190821_JH_WT_Ubi	145.99	76.163	0	0	0	0	0	0	0	0	0	0			1950	126	1711	5464	5751	5751			58	1
GTDSQAMEEEKPEGHV	Oxidation (M)	1758.7367	0.73665761	1241	sp|Q13451|FKBP5_HUMAN	yes	yes	0	0	0	1	1			1							19.454	19.454	3	0.0088973	3567	20190821_JH_WT_Ubi	79.875	55.599	2767500	0	0	2767500	0	0	0	0	0	0			1951	1241	1712	5465	5752	5752			776	1
GTDTVAGLALIKK	GlyGly (K)	1399.8035	0.80347903	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	1	0	1							1		1	33.02	33.02	3	0.00075145	9196	20190902_JH_WT_Ubi_3	110.93	20.019	6336600	0	0	0	0	0	0	1204300	0	5132300			1952	845	1713	5466;5467	5753;5754	5754		821;822		2
GTEAGQVGEPGIPTGEAGPSCSSASDKLPR	GlyGly (K)	3025.4047	0.40470579	180	sp|O15355|PPM1G_HUMAN	yes	yes	0	0	1	0	1	1	1								33.155	33.155	3	3.1916E-05	7028	20190821_JH_MUT_Ubi	77.63	45.484	4475500	2617600	1857800	0	0	0	0	0	0	0			1953	180	1714	5468;5469	5755;5756	5756		153		2
GTEDITSPHGIPLDLLDR	Unmodified	1947.9902	0.99017018	2201	sp|Q9Y265|RUVB1_HUMAN;sp|Q9Y265-2|RUVB1_HUMAN	yes	no	0	0	0	0	0			1					1	1	44.116	44.116	3	0.023671	12809	20190902_JH_WT_Ubi_3	46.249	14.421	6855600	0	0	2496400	0	0	0	0	1716500	2642700			1954	2201	1715	5470;5471;5472	5757;5758;5759	5759				3
GTEITHAVVIK	Unmodified	1166.6659	0.66592292	102	sp|Q99613-2|EIF3C_HUMAN;sp|Q99613|EIF3C_HUMAN;sp|B5ME19|EIFCL_HUMAN	yes	no	0	0	0	0	0		1				1				26.013	26.013	2	0.013204	5894	20190902_JH_MUT_Ubi_2	84.213	42.022	961140	0	275150	0	0	0	685990	0	0	0			1955	102	1716	5473;5474	5760;5761	5761				0
GTGLQPGEEELPDIAPPLVTPDEPK	Unmodified	2598.3065	0.30647852	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	0	0	0			1						1	48.48	48.48	3	0.00094216	13472	20190821_JH_WT_Ubi	65.064	17.337	3261200	0	0	1886100	0	0	0	0	0	1375100			1956	849	1717	5475;5476	5762;5763	5762				2
GTHFNFAIVFTDVK	Unmodified	1594.8144	0.81437807	126	sp|O00422|SAP18_HUMAN	yes	yes	0	0	0	0	0		1	1			1				43.884	43.884	3	0.00015517	11167	20190821_JH_MUT_Ubi	111.72	64.429	9511700	0	1768400	7189400	0	0	553870	0	0	0			1957	126	1718	5477;5478;5479	5764;5765;5766	5764				3
GTHTGVWVGVSGSETSEALSR	Unmodified	2116.0185	0.018510196	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1	1				1	1			32.861	32.861	3	2.2557E-37	8338	20190902_JH_MUT_Ubi_2	181.94	144.77	12404000	6077000	0	0	0	0	3799600	2527000	0	0			1958	881	1719	5480;5481;5482;5483	5767;5768;5769;5770;5771	5769				5
GTIVLASPGWTTHSISDGK	Unmodified	1925.9847	0.98469087	1309	sp|Q14914-2|PTGR1_HUMAN;sp|Q14914|PTGR1_HUMAN	yes	no	0	0	0	0	0		1	1				1	1		36.986	36.986	3	0.00035326	8764	20190821_JH_WT_Ubi	84.842	47.404	23698000	0	3157000	11365000	0	0	0	1189600	7987000	0			1959	1309	1720	5484;5485;5486;5487	5772;5773;5774;5775	5774				4
GTKSQGPAKPPPPR	GlyGly (K)	1530.8267	0.82667409	1240	sp|Q13444-11|ADA15_HUMAN;sp|Q13444-2|ADA15_HUMAN;sp|Q13444-12|ADA15_HUMAN	yes	no	0	0	1	0	2	1	1				1	1			11.747	11.747	4	0.0027882	2218	20190821_JH_EV_Ubi	85.672	49.369	9861200	1344900	1037700	0	0	0	3533100	3945500	0	0			1960	1240	1721	5488;5489;5490;5491	5776;5777;5778;5779	5776		1307		4
GTLMELGISPIVTSGLIMQLLAGAK	2 Oxidation (M)	2544.3907	0.39068262	1027	sp|P61619|S61A1_HUMAN;sp|Q9H9S3-2|S61A2_HUMAN;sp|Q9H9S3-3|S61A2_HUMAN;sp|Q9H9S3|S61A2_HUMAN	yes	no	0	0	0	2	0			1							57.425	57.425	3	2.6406E-15	16295	20190821_JH_WT_Ubi	124.76	104.5	2571000	0	0	2571000	0	0	0	0	0	0			1961	1027	1722	5492	5780;5781	5780			636;637	2
GTLQQFVDNFFQSVLAPGHAVPPAVK	Unmodified	2766.4493	0.4493352	169	sp|O15031|PLXB2_HUMAN	yes	yes	0	0	0	0	0		1						1		55.899	55.899	3	1.6746E-10	16502	20190902_JH_WT_Ubi_2	107.83	78.378	4141800	0	1563000	0	0	0	0	0	2578800	0			1962	169	1723	5493;5494	5782;5783	5783				2
GTLSDEHAGVISVLAQQAAK	Unmodified	1994.0433	0.043268383	206	sp|O43504|LTOR5_HUMAN	yes	yes	0	0	0	0	0								1	1	38.262	38.262	3	4.2268E-07	11343	20190902_JH_WT_Ubi_2	119.92	64.825	8705100	0	0	0	0	0	0	0	3210500	5494600			1963	206	1724	5495;5496	5784;5785	5784				2
GTMTTGHNVADLVVILK	Oxidation (M)	1783.9502	0.95021962	1199	sp|Q12905|ILF2_HUMAN	yes	yes	0	0	0	1	0	1									39.443	39.443	3	9.2599E-06	9954	20190821_JH_EV_Ubi	118.71	67.574	6645900	6645900	0	0	0	0	0	0	0	0			1964	1199	1725	5497	5786	5786			758	1
GTMTTGHNVADLVVILK	Unmodified	1767.9553	0.955305	1199	sp|Q12905|ILF2_HUMAN	yes	yes	0	0	0	0	0		1	1							41.37	41.37	3	0.00058276	10100	20190821_JH_MUT_Ubi	90.259	60.087	7251900	0	1620100	5631800	0	0	0	0	0	0			1965	1199	1725	5498;5499	5787;5788	5787				2
GTQSLPTASASKFPSSGPVTPQPTALTFAK	GlyGly (K)	3087.5877	0.58767918	2255	sp|Q9Y679|AUP1_HUMAN;sp|Q9Y679-2|AUP1_HUMAN	yes	no	0	0	1	0	1		1	1			1		1		40.336	40.336	3	1.1665E-06	11974	20190902_JH_WT_Ubi_2	87.025	61.526	9933400	0	1365100	2409900	0	0	1563300	0	4595100	0			1966	2255	1726	5500;5501;5502;5503	5789;5790;5791;5792;5793	5793		2091		5
GTSADHCVQLIAAQEADAITLDGGAIYEAGK	Unmodified	3144.5034	0.5033572	471	sp|P08582|TRFM_HUMAN;sp|P08582-2|TRFM_HUMAN	yes	no	0	0	0	0	0			1						1	46.433	46.433	3	1.5924E-11	12621	20190821_JH_WT_Ubi	106.72	76.802	7450400	0	0	5659800	0	0	0	0	0	1790600			1967	471	1727	5504;5505	5794;5795	5794				2
GTSELDRPLQGTLTLLR	Unmodified	1869.032	0.031975416	1512	sp|Q70EL4-2|UBP43_HUMAN;sp|Q70EL4-3|UBP43_HUMAN;sp|Q70EL4-4|UBP43_HUMAN;sp|Q70EL4|UBP43_HUMAN	yes	no	0	0	0	0	1		1	1			1	1			41.202	41.202	3	2.6985E-07	11583	20190902_JH_MUT_Ubi_2	130.02	92.652	77226000	0	25042000	6077800	0	0	22004000	24102000	0	0			1968	1512	1728	5506;5507;5508;5509	5796;5797;5798;5799	5797				4
GTSYQSPHGIPIDLLDR	Unmodified	1867.9428	0.94282606	2197	sp|Q9Y230-2|RUVB2_HUMAN;sp|Q9Y230|RUVB2_HUMAN	yes	no	0	0	0	0	0								1		40.048	40.048	3	0.032403	11840	20190902_JH_WT_Ubi_2	42.242	1.1538	2653500	0	0	0	0	0	0	0	2653500	0			1969	2197	1729	5510	5800	5800				1
GTVLLADNVICPGAPDFLAHVR	Unmodified	2334.2154	0.21543586	644	sp|P21964-2|COMT_HUMAN;sp|P21964|COMT_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	47.623	47.623	3	1.1706E-07	13092	20190821_JH_WT_Ubi	109.77	58.423	31424000	0	1842600	13995000	0	0	1365400	0	5717500	8503800			1970	644	1730	5511;5512;5513;5514;5515	5801;5802;5803;5804;5805	5803				5
GTVVYGEPITASLGTDGSHYWSK	Unmodified	2424.1598	0.1597547	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	40.514	40.514	3	2.2335E-06	10242	20190821_JH_WT_Ubi	95.365	56.162	60128000	0	0	30832000	0	0	2677600	2443600	10348000	13826000			1971	1376	1731	5516;5517;5518;5519;5520	5806;5807;5808;5809;5810	5808				5
GTYTEFLKSGIDFGSLLK	GlyGly (K)	2089.0732	0.073171528	187	sp|O15439|MRP4_HUMAN;sp|O15439-4|MRP4_HUMAN;sp|O15439-3|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1	1	1	49.358	49.358	3	3.7979E-34	13090	20190821_JH_MUT_Ubi	191.51	153.49	65029000	0	10657000	24893000	0	1446400	3577300	3655700	6390200	14409000			1972	187	1732	5521;5522;5523;5524;5525;5526;5527	5811;5812;5813;5814;5815;5816;5817	5812		166		7
GVAALTSDPAVQAIVLDTASDVLDK	Unmodified	2468.301	0.30099921	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0			1							54.975	54.975	3	7.6444E-10	15803	20190821_JH_WT_Ubi	100.14	74.594	1040300	0	0	1040300	0	0	0	0	0	0			1973	2230	1733	5528	5818	5818				1
GVAGAHGLLCLLSDHVDK	Unmodified	1860.9516	0.9516166	2106	sp|Q9UBQ7|GRHPR_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	38.293	38.293	3	8.4653E-34	9300	20190821_JH_WT_Ubi	184.01	144.38	57437000	8743400	2952000	13964000	4191700	6818800	2789800	3453400	5909700	8613900			1974	2106	1734	5529;5530;5531;5532;5533;5534;5535;5536;5537	5819;5820;5821;5822;5823;5824;5825;5826;5827	5825				9
GVAGALRPLVQATVPATPEQPVLDLK	Unmodified	2639.501	0.50103642	868	sp|P47985|UCRI_HUMAN;sp|P0C7P4|UCRIL_HUMAN	yes	no	0	0	0	0	1	1			1	1				1	45.402	45.402	3	0.00029764	11438	20190902_JH_EV_Ubi_2	82.267	67.492	24889000	10734000	0	0	3068100	2510600	0	0	0	8576900			1975	868	1735	5538;5539;5540;5541	5828;5829;5830;5831;5832	5830				5
GVDEVTIVNILTNR	Unmodified	1541.8413	0.8413211	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	0	0	0			1			1			1	49.849	49.849	3	9.8906E-08	14306	20190902_JH_MUT_Ubi_2	143.58	88.32	2401200	0	0	1293700	0	0	477440	0	0	630040			1976	446	1736	5542;5543;5544	5833;5834;5835	5833				3
GVEGTWVDICNNPAMEAEILKEIR	GlyGly (K)	2857.3739	0.37386335	248	sp|O60488-2|ACSL4_HUMAN;sp|O60488|ACSL4_HUMAN	yes	no	0	0	1	0	1			1							49.494	49.494	3	2.0503E-06	13800	20190821_JH_WT_Ubi	92.565	57.319	3350200	0	0	3350200	0	0	0	0	0	0			1977	248	1737	5545	5836	5836		222		1
GVEITGFPEAQALGLEVFHAGTALK	Unmodified	2554.3431	0.3431388	648	sp|P22102|PUR2_HUMAN;sp|P22102-2|PUR2_HUMAN	yes	no	0	0	0	0	0			1							52.098	52.098	3	0.015376	14721	20190821_JH_WT_Ubi	43.823	15.919	2105400	0	0	2105400	0	0	0	0	0	0			1978	648	1738	5546	5837	5837				1
GVEKPPHLAALILAR	Unmodified	1583.9511	0.95114632	1657	sp|Q8NFW8-2|NEUA_HUMAN;sp|Q8NFW8|NEUA_HUMAN	yes	no	0	0	0	0	1			1							35.106	35.106	3	5.2454E-07	8038	20190821_JH_WT_Ubi	139.48	97.899	8580600	0	0	8580600	0	0	0	0	0	0			1979	1657	1739	5547	5838	5838				1
GVFHGIENFINEASYMSILGMTPGFGDK	2 Oxidation (M)	3062.4154	0.41539382	374	sp|P00367|DHE3_HUMAN;sp|P00367-2|DHE3_HUMAN;sp|P00367-3|DHE3_HUMAN	yes	no	0	0	0	2	0			1					1		52.958	52.958	3	5.1069E-05	15760	20190902_JH_WT_Ubi_2	77.169	53.494	7960200	0	0	4793000	0	0	0	0	3167200	0			1980	374	1740	5548;5549	5839;5840	5840			169;170	2
GVGAAATAVTQALNELLQHVK	Unmodified	2090.1484	0.14840216	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1	1	54.292	54.292	3	3.4056E-29	14489	20190821_JH_EV_Ubi	163	130.81	181710000	21046000	34670000	116320000	0	0	2199400	2151600	1969300	3350200			1981	2230	1741	5550;5551;5552;5553;5554;5555;5556	5841;5842;5843;5844;5845;5846;5847;5848;5849;5850	5841				10
GVIINTASVAAFEGQVGQAAYSASK	Unmodified	2438.2442	0.24415304	1843	sp|Q99714|HCD2_HUMAN;sp|Q99714-2|HCD2_HUMAN	yes	no	0	0	0	0	0			1					1	1	47.351	47.351	3	2.4569E-15	13867	20190902_JH_WT_Ubi_3	124.21	96.303	9924200	0	0	5933500	0	0	0	0	1952600	2038100			1982	1843	1742	5557;5558;5559	5851;5852;5853	5853				3
GVKLAELQQR	GlyGly (K)	1254.7044	0.70443369	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	25.385	25.385	3	3.1884E-06	4381	20190821_JH_MUT_Ubi	150.81	112.79	49201000	0	4084000	8365500	0	0	8504500	9297200	10732000	8217900			1983	329	1743	5560;5561;5562;5563;5564;5565	5854;5855;5856;5857;5858;5859	5854		305		6
GVLMVGPPGTGKTMLAK	2 Oxidation (M);GlyGly (K)	1801.943	0.94302575	1887	sp|Q9BW62|KATL1_HUMAN	yes	yes	0	0	1	2	1							1			40.855	40.855	3	0.025008	10645	20190902_JH_MUT_Ubi_3	43.297	8.9025	2311200	0	0	0	0	0	0	2311200	0	0			1984	1887	1744	5566	5860	5860		1828	1032;1033	1
GVMLAVDAVIAELK	Oxidation (M)	1443.8007	0.80070184	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	1	0			1					1	1	50.86	50.86	3	0.00014173	14248	20190821_JH_WT_Ubi	115.24	68.201	4417900	0	0	2230300	0	0	0	0	661760	1525900			1985	515	1745	5567;5568;5569	5861;5862;5863	5861			299	3
GVNASAQKFATDGEGYK	GlyGly (K)	1855.8701	0.87005504	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	1	0	1						1		1		26.582	26.582	3	0.0082387	6086	20190902_JH_MUT_Ubi_2	66.436	28.136	3199100	0	0	0	0	0	1125300	0	2073800	0			1986	1129;1130	1746	5570;5571	5864;5865	5864		1121		2
GVNASAQKFATDGEGYKPCDPQVIR	GlyGly (K)	2821.3453	0.34534042	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	1	0	2		1								31.454	31.454	4	0.018188	6389	20190821_JH_MUT_Ubi	42.831	18.433	3308200	0	3308200	0	0	0	0	0	0	0			1987	1129;1130	1747	5572	5866	5866		1121		1
GVNLPGAAVDLPAVSEK	Unmodified	1635.8832	0.88318591	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0	1			1	1			1	1	42.308	42.308	3	0.00061807	12736	20190902_JH_WT_Ubi_2	89.358	52.42	6356600	715120	0	0	557960	733100	0	0	2313000	2037400			1988	556	1748	5573;5574;5575;5576;5577	5867;5868;5869;5870;5871	5870				5
GVPIIFADELDDSKPPPSSSMPLILQEEK	Oxidation (M);GlyGly (K)	3281.6377	0.63772542	1273	sp|Q14118|DAG1_HUMAN	yes	yes	0	0	1	1	1	1			1	1		1			46.864	46.864	3	1.5806E-25	11719	20190902_JH_EV_Ubi_2	140.4	105.08	17118000	6303000	0	0	2483800	6389000	0	1942200	0	0			1989	1273	1749	5578;5579;5580;5581	5872;5873;5874;5875	5873		1336	790	4
GVPIIFADELDDSKPPPSSSMPLILQEEK	GlyGly (K)	3265.6428	0.6428108	1273	sp|Q14118|DAG1_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1				50.196	50.196	3	2.288E-07	14299	20190902_JH_MUT_Ubi_2	94.955	71.515	10213000	3122900	3163200	2605300	0	0	1321800	0	0	0			1990	1273	1749	5582;5583;5584;5585	5876;5877;5878;5879;5880;5881;5882	5880		1336		7
GVQDIVVGEGTHFLIPWVQK	Unmodified	2221.1895	0.18953869	771	sp|P35232|PHB_HUMAN;sp|P35232-2|PHB_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	50.98	50.98	3	5.8514E-07	14325	20190821_JH_WT_Ubi	118.66	91.332	45725000	2790800	3472900	24434000	0	0	1365100	1368300	6298900	5995800			1991	771	1750	5586;5587;5588;5589;5590;5591;5592	5883;5884;5885;5886;5887;5888;5889	5887				7
GVQGIIVVNTEGIPIK	Unmodified	1635.956	0.95595693	2000	sp|Q9NP97|DLRB1_HUMAN	yes	yes	0	0	0	0	0		1								44.669	44.669	2	0.00037282	11299	20190821_JH_MUT_Ubi	104.17	72.888	3563000	0	3563000	0	0	0	0	0	0	0			1992	2000	1751	5593	5890	5890				1
GVQPPNFSWVLPGR	Acetyl (Protein N-term)	1594.8256	0.82561145	1883	sp|Q9BVJ7|DUS23_HUMAN	yes	yes	1	0	0	0	0			1							55.719	55.719	2	0.0018947	15986	20190821_JH_WT_Ubi	80.763	43.652	466580	0	0	466580	0	0	0	0	0	0			1993	1883	1752	5594	5891	5891				1
GVSFTFGADVVSK	Unmodified	1312.6663	0.66631685	1037	sp|P62140|PP1B_HUMAN	yes	yes	0	0	0	0	0	1									41.47	41.47	2	0.011672	10742	20190821_JH_EV_Ubi	77.288	12.447	1078600	1078600	0	0	0	0	0	0	0	0			1994	1037	1753	5595	5892	5892				1
GVSGSCNIDVVCPEGDGRR	Unmodified	2032.9055	0.90547105	10	CON__P15636	yes	yes	0	0	0	0	1			1							28.653	28.653	3	0.0012173	5873	20190821_JH_WT_Ubi	80.738	38.17	4351700	0	0	4351700	0	0	0	0	0	0		+	1995	10	1754	5596	5893	5893				1
GVSKAVEHINK	GlyGly (K)	1294.6993	0.69934831	435	sp|P06733|ENOA_HUMAN	yes	yes	0	0	1	0	1		1								17.604	17.604	3	0.014947	2650	20190821_JH_MUT_Ubi	79.23	34.616	2675900	0	2675900	0	0	0	0	0	0	0			1996	435	1755	5597	5894	5894		427;429		1
GVSLTNHHFYDESK	Unmodified	1632.7532	0.75323437	552	sp|P14314-2|GLU2B_HUMAN;sp|P14314|GLU2B_HUMAN	yes	no	0	0	0	0	0	1		1		1			1	1	25.136	25.136	3	0.00011987	4889	20190821_JH_WT_Ubi	114.87	64.766	34350000	1639800	0	8040400	0	2350600	0	0	12891000	9428700			1997	552	1756	5598;5599;5600;5601;5602	5895;5896;5897;5898;5899	5897				5
GVSQKNNDLTSCCFSDAK	GlyGly (K)	2143.9263	0.92626607	2162	sp|Q9ULC5-4|ACSL5_HUMAN;sp|Q9ULC5|ACSL5_HUMAN;sp|Q9ULC5-3|ACSL5_HUMAN	yes	no	0	0	1	0	1					1				1	25.885	25.885	3	0.0050366	6744	20190902_JH_WT_Ubi_3	68.845	36.504	2145300	0	0	0	0	0	0	0	0	2145300			1998	2162	1757	5603;5604	5900;5901	5901		2019		2
GVSSQETAGIGASAHLVNFK	Unmodified	1972.0014	0.0014035686	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1	1	1	34.16	34.16	3	0.0015113	7730	20190821_JH_WT_Ubi	71.637	39.385	138970000	9994900	4897700	45723000	3853500	0	5961900	4203100	32201000	32133000			1999	845	1758	5605;5606;5607;5608;5609;5610;5611;5612	5902;5903;5904;5905;5906;5907;5908;5909	5907				8
GVTFNVTTVDTK	Unmodified	1280.6612	0.66123147	121	sp|O00299|CLIC1_HUMAN	yes	yes	0	0	0	0	0				1						34.502	34.502	2	0.014832	8349	20190902_JH_EV_Ubi_2	78.342	35.034	7790000	0	0	0	7790000	0	0	0	0	0			2000	121	1759	5613	5910	5910				1
GVTIASGGVLPNIHPELLAK	Unmodified	1985.131	0.13096118	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	42.998	42.998	3	1.5757E-05	12237	20190902_JH_MUT_Ubi_2	105.39	84.033	126530000	25860000	8074100	27560000	9760000	10484000	8156900	7901200	13786000	14944000			2001	281	1760	5614;5615;5616;5617;5618;5619;5620;5621;5622	5911;5912;5913;5914;5915;5916;5917;5918;5919	5915				9
GVTIASGGVLPNIHPELLAKK	GlyGly (K)	2227.2689	0.26885164	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	38.752	38.752	4	0.00042214	10985	20190902_JH_WT_Ubi_3	74.812	55.087	1588100000	106220000	175860000	382060000	99020000	39468000	189870000	197730000	185220000	212680000			2002	281	1761	5623;5624;5625;5626;5627;5628;5629;5630;5631	5920;5921;5922;5923;5924;5925;5926;5927;5928	5928		267;268		9
GVTIIGPATVGGIK	Unmodified	1281.7656	0.76563696	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	0	0	0						1				38.83	38.83	2	0.020751	10663	20190902_JH_MUT_Ubi_2	64.73	6.2965	4270400	0	0	0	0	0	4270400	0	0	0			2003	946	1762	5632	5929	5929				0
GVTIIGPATVGGIKPGCFK	GlyGly (K)	1985.0768	0.076817118	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	1	0	1		1		1		1	1		1	38.938	38.938	3	0.0012803	10668	20190902_JH_MUT_Ubi_2	75.574	30.459	22242000	0	6110800	0	2141100	0	8230200	2698500	0	3061000			2004	946	1763	5633;5634;5635;5636;5637	5930;5931;5932;5933;5934;5935;5936	5934		905;906		7
GVTQEVDGLSQTDGTLTYFDKVDK	GlyGly (K)	2729.3032	0.30318406	1629	sp|Q8NB49-2|AT11C_HUMAN;sp|Q8NB49-3|AT11C_HUMAN;sp|Q8NB49-4|AT11C_HUMAN;sp|Q8NB49|AT11C_HUMAN	yes	no	0	0	1	0	1				1		1				41.486	41.486	3	2.5382E-06	11784	20190902_JH_MUT_Ubi_2	90.884	59.117	1463700	0	0	0	829140	0	634590	0	0	0			2005	1629	1764	5638;5639	5937;5938;5939	5938		1626;1627		3
GVTQFGNKYIQQTK	GlyGly (K)	1724.8846	0.8845829	221	sp|O43809|CPSF5_HUMAN	yes	yes	0	0	1	0	1		1								28.133	28.133	3	0.021829	5139	20190821_JH_MUT_Ubi	62.162	25.217	1237900	0	1237900	0	0	0	0	0	0	0			2006	221	1765	5640	5940	5940		201		1
GVVGPGPAAIAALGGGGAGPPVVGGGGGR	Unmodified	2281.2291	0.22911209	646	sp|P22059|OSBP1_HUMAN	yes	yes	0	0	0	0	0	1									45.897	45.897	3	0.00018579	12423	20190821_JH_EV_Ubi	67.979	32.803	1456300	1456300	0	0	0	0	0	0	0	0			2007	646	1766	5641	5941	5941				1
GVVPLAGTDGETTTQGLDGLSER	Unmodified	2272.1183	0.11828382	498	sp|P09972|ALDOC_HUMAN	yes	yes	0	0	0	0	0								1	1	43.214	43.214	3	1.1167E-29	12978	20190902_JH_WT_Ubi_2	163.78	1.8227	48419000	0	0	0	0	0	0	0	22278000	26141000			2008	498	1767	5642;5643	5942;5943	5942				2
GVWIPEGESIKIPVCIK	GlyGly (K)	2038.0921	0.092132831	642	sp|P21860-5|ERBB3_HUMAN;sp|P21860-4|ERBB3_HUMAN;sp|P21860|ERBB3_HUMAN	yes	no	0	0	1	0	1		1								44.669	44.669	3	0.0042186	11322	20190821_JH_MUT_Ubi	73.022	41.195	3826300	0	3826300	0	0	0	0	0	0	0			2009	642	1768	5644	5944	5944		615		1
GWKTGDVEDSTVLK	GlyGly (K)	1647.8104	0.8104149	2178	sp|Q9UNN5-2|FAF1_HUMAN;sp|Q9UNN5|FAF1_HUMAN	yes	no	0	0	1	0	1		1			1		1		1	30.453	30.453	3	1.2309E-05	6188	20190821_JH_MUT_Ubi	131.35	78.852	10996000	0	2124400	0	0	1469400	0	3727900	0	3674000			2010	2178	1769	5645;5646;5647;5648	5945;5946;5947;5948;5949	5946		2033;2034		5
GWLTINNISLMK	Unmodified	1388.7486	0.74860669	908	sp|P50570-3|DYN2_HUMAN;sp|P50570-2|DYN2_HUMAN;sp|P50570-5|DYN2_HUMAN;sp|P50570-4|DYN2_HUMAN;sp|P50570|DYN2_HUMAN	yes	no	0	0	0	0	0		1								48.112	48.112	2	5.3595E-07	12558	20190821_JH_MUT_Ubi	120.27	54.995	0	0	0	0	0	0	0	0	0	0			2011	908	1770	5649	5950	5950				1
GYDYGPHFQGILEASLEGDSGR	Unmodified	2367.0768	0.076753356	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1					1	1			44.523	44.523	3	0.0034819	12874	20190902_JH_MUT_Ubi_2	61.087	29.678	3717200	1789800	0	0	0	0	933230	994140	0	0			2012	881	1771	5650;5651;5652	5951;5952;5953	5952				3
GYEVIYLTEPVDEYCIQALPEFDGK	Unmodified	2947.3837	0.38374256	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0			1					1		54.112	54.112	3	0.0028088	15458	20190821_JH_WT_Ubi	57.986	32.182	8488100	0	0	4990100	0	0	0	0	3498000	0			2013	557	1772	5653;5654	5954;5955	5954				2
GYGTVIPPQASLVFHVLLIDVHNPK	Unmodified	2713.4956	0.49555712	1757	sp|Q96AY3|FKB10_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	52.699	52.699	4	0.00016428	15214	20190902_JH_WT_Ubi_3	74.657	61.728	55588000	0	6369800	35359000	0	0	0	0	10394000	3464500			2014	1757	1773	5655;5656;5657;5658	5956;5957;5958;5959	5959				4
GYIWNYGTLPQTWEDPHEK	Unmodified	2333.0753	0.075296793	1941	sp|Q9H2U2|IPYR2_HUMAN;sp|Q9H2U2-2|IPYR2_HUMAN	yes	no	0	0	0	0	0			1							43.808	43.808	3	0.0089932	11547	20190821_JH_WT_Ubi	57.499	33.968	4738800	0	0	4738800	0	0	0	0	0	0			2015	1941	1774	5659	5960	5960				1
GYNANFCAGACPYLWSSDTQHSR	Unmodified	2661.1125	0.11250371	1029	sp|P61812|TGFB2_HUMAN;sp|P61812-2|TGFB2_HUMAN	yes	no	0	0	0	0	0			1							38.473	38.473	3	0.0071152	9337	20190821_JH_WT_Ubi	52.498	29.051	1709500	0	0	1709500	0	0	0	0	0	0			2016	1029	1775	5660	5961	5961				1
GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK	Unmodified	3252.2929	0.29290673	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN	no	no	0	0	0	0	0			1							28.199	28.199	3	0.0015656	5742	20190821_JH_WT_Ubi	62.57	42.131	0	0	0	0	0	0	0	0	0	0			2017	1200;1201	1776	5661	5962	5962				1
GYSFTTTAER	Unmodified	1131.5197	0.51965261	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	0	0	1									28.238	28.238	2	0.022637	5744	20190821_JH_EV_Ubi	75.378	39.94	2651100	2651100	0	0	0	0	0	0	0	0			2018	1000;1087	1777	5662	5963	5963				1
GYSLVSGGTDNHLVLVDLRPK	Unmodified	2239.1961	0.19608063	764	sp|P34897-3|GLYM_HUMAN;sp|P34897-2|GLYM_HUMAN;sp|P34897|GLYM_HUMAN	yes	no	0	0	0	0	1				1	1					39.054	39.054	3;4	0.0067776	9768	20190902_JH_EV_Ubi_2	71.263	55.14	14756000	0	0	0	3941100	10815000	0	0	0	0			2019	764	1778	5663;5664	5964;5965	5964				2
GYTSWAIGLSVADLAESIMK	Oxidation (M)	2127.0558	0.055806905	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN	yes	no	0	0	0	1	0			1							54.754	54.754	3	0.0011224	15734	20190821_JH_WT_Ubi	74.147	37.064	7224500	0	0	7224500	0	0	0	0	0	0			2020	373	1779	5665	5966	5966			165	1
GYWASLDASTQTTHELTIPNNLIGCIIGR	Unmodified	3200.5924	0.59244698	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	0	0	0		1	1							52.918	52.918	3	2.4748E-07	14018	20190821_JH_MUT_Ubi	92.716	50.332	18722000	0	12441000	6281100	0	0	0	0	0	0			2021	1341	1780	5666;5667	5967;5968;5969	5967				3
HAAENPGKYNILGTNTIMDK	Oxidation (M);GlyGly (K)	2316.1168	0.11684403	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	1	1	1	1			1	1		1	1	1	29.004	29.004	3	0.00077149	6584	20190902_JH_MUT_Ubi_3	79.88	52.731	14521000	1293600	0	0	1504400	1450800	0	1840800	5154600	3276600			2022	1128	1781	5668;5669;5670;5671;5672;5673	5970;5971;5972;5973;5974;5975	5973		1118	700	6
HADIVTTTTHK	Unmodified	1222.6306	0.63060004	764	sp|P34897-3|GLYM_HUMAN;sp|P34897-2|GLYM_HUMAN;sp|P34897|GLYM_HUMAN	yes	no	0	0	0	0	0								1		16.17	16.17	3	0.010264	3901	20190902_JH_WT_Ubi_2	80.102	35.784	1802600	0	0	0	0	0	0	0	1802600	0			2023	764	1782	5674	5976	5976				1
HAGGVTGGWDNLLAVIPGGSSTPLIPK	Unmodified	2613.3915	0.39148597	898	sp|P49821-2|NDUV1_HUMAN;sp|P49821|NDUV1_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	51.867	51.867	3	1.5337E-10	15071	20190902_JH_WT_Ubi_3	106.12	78.401	13070000	0	0	6842100	0	0	1123400	0	1554900	3549200			2024	898	1783	5675;5676;5677;5678	5977;5978;5979;5980	5980				4
HAHSILQFQFAEVK	Unmodified	1653.8627	0.86272524	1404	sp|Q32MZ4-4|LRRF1_HUMAN;sp|Q32MZ4-3|LRRF1_HUMAN;sp|Q32MZ4-2|LRRF1_HUMAN;sp|Q32MZ4|LRRF1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			34.961	34.961	3	0.00013489	8099	20190821_JH_WT_Ubi	113.53	63.44	14543000	0	1095600	10304000	0	0	1696500	1446700	0	0			2025	1404	1784	5679;5680;5681;5682	5981;5982;5983;5984	5984				4
HALGAVAQLLQHAAAGK	Unmodified	1654.9267	0.92672248	1556	sp|Q86VI3|IQGA3_HUMAN	yes	yes	0	0	0	0	0		1								38.456	38.456	3	8.5615E-14	8909	20190821_JH_MUT_Ubi	147.52	61.234	1570700	0	1570700	0	0	0	0	0	0	0			2026	1556	1785	5683	5985	5985				1
HAPGLIAALAYETANFYQK	Unmodified	2077.0633	0.063275544	1452	sp|Q5VW32-2|BROX_HUMAN;sp|Q5VW32|BROX_HUMAN	yes	no	0	0	0	0	0						1		1		47.776	47.776	3	2.1707E-07	14515	20190902_JH_WT_Ubi_2	131.61	94.971	1090300	0	0	0	0	0	1090300	0	0	0			2027	1452	1786	5684;5685	5986;5987	5987				2
HAQPALLYLVPACIGFPVLVALAK	Unmodified	2560.4604	0.46035758	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN;sp|Q8TCT9-4|HM13_HUMAN	yes	no	0	0	0	0	0			1					1		56.363	56.363	3	1.5657E-09	16570	20190902_JH_WT_Ubi_2	111.57	104.47	4333500	0	0	1908900	0	0	0	0	2424600	0			2028	1676	1787	5686;5687	5988;5989	5989				2
HASGGSTVHIHPQAAPVVCR	Unmodified	2080.0385	0.038474552	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	0	0	0					1			1	1	22.088	22.088	4	0.013591	4597	20190902_JH_EV_Ubi_3	48.848	12.655	35219000	0	0	0	0	9925900	0	0	15395000	9898300			2029	1539	1788	5688;5689;5690	5990;5991;5992	5990				3
HATGNYIIIMDADLSHHPK	Unmodified	2132.0473	0.047307904	259	sp|O60762|DPM1_HUMAN	yes	yes	0	0	0	0	0	1									32.594	32.594	4	0.025355	7443	20190821_JH_EV_Ubi	40.962	0.44248	1189000	1189000	0	0	0	0	0	0	0	0			2030	259	1789	5691	5993	5993				1
HATGNYIIIMDADLSHHPK	Oxidation (M)	2148.0422	0.042222526	259	sp|O60762|DPM1_HUMAN	yes	yes	0	0	0	1	0	1									28.609	28.609	4	0.034073	5944	20190821_JH_EV_Ubi	40.798	15.905	1086300	1086300	0	0	0	0	0	0	0	0			2031	259	1789	5692	5994	5994				0
HAVSEGTKAVTK	GlyGly (K)	1340.7048	0.70482762	261;666;995	sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q96A08|H2B1A_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	11.482	11.482	3	1.1624E-11	2195	20190821_JH_EV_Ubi	162.68	104.83	594520000	25785000	40898000	74574000	41369000	37609000	0	81800000	151050000	141430000			2032	261;666;995	1790	5693;5694;5695;5696;5697;5698;5699;5700;5701	5995;5996;5997;5998;5999;6000;6001;6002;6003	5995		251		9
HAVVNLINYQDDAELATR	Unmodified	2041.0229	0.022867292	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	0	0	0						1				37.329	37.329	3	0.00091951	10161	20190902_JH_MUT_Ubi_2	79.97	43.332	1378700	0	0	0	0	0	1378700	0	0	0			2033	770	1791	5702	6004	6004				1
HCAEPFTEYWTCIDYTGQQLFR	Unmodified	2821.2265	0.22647084	930	sp|P51970|NDUA8_HUMAN	yes	yes	0	0	0	0	0								1		50.474	50.474	3	5.5131E-07	15108	20190902_JH_WT_Ubi_2	110.74	85.809	867240	0	0	0	0	0	0	0	867240	0			2034	930	1792	5703	6005	6005				0
HCECSTDEVNSEDMDAYCR	Oxidation (M)	2392.8301	0.83005878	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	0	0	1	0			1	1	1			1	1	23.529	23.529	3	9.614E-31	6200	20190902_JH_WT_Ubi_2	178.22	158.4	33886000	0	0	4972500	1799900	1583700	0	0	13053000	12477000			2035	429	1793	5704;5705;5706;5707;5708	6006;6007;6008;6009;6010;6011	6010			220	6
HCECSTDEVNSEDMDAYCR	Unmodified	2376.8351	0.83514416	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	0	0	0	0			1					1	1	27.537	27.537	3	2.7212E-18	7211	20190902_JH_WT_Ubi_3	154.51	152.77	11602000	0	0	4316600	0	0	0	0	4016900	3268900			2036	429	1793	5709;5710;5711	6012;6013;6014	6014				3
HCGNIPVFVINYPLTLK	Unmodified	1984.0604	0.060438772	1784	sp|Q96I59-2|SYNM_HUMAN;sp|Q96I59|SYNM_HUMAN	yes	no	0	0	0	0	0			1			1	1	1		46.796	46.796	3	3.2215E-42	12866	20190821_JH_WT_Ubi	200.97	138.29	21570000	0	0	13248000	0	0	1707800	1477800	5136400	0			2037	1784	1794	5712;5713;5714;5715	6015;6016;6017;6018	6017				4
HDADGQATLLNLLLR	Unmodified	1648.8897	0.88966827	196	sp|O43242|PSMD3_HUMAN;sp|O43242-2|PSMD3_HUMAN	yes	no	0	0	0	0	0					1	1				49.151	49.151	3	0.0011006	14167	20190902_JH_MUT_Ubi_2	93.243	20.562	1566600	0	0	0	0	774700	791930	0	0	0			2038	196	1795	5716;5717	6019;6020	6020				2
HDFSTVLTVFPILR	Unmodified	1643.9035	0.90352742	2188	sp|Q9UPT5-2|EXOC7_HUMAN;sp|Q9UPT5-5|EXOC7_HUMAN;sp|Q9UPT5-1|EXOC7_HUMAN;sp|Q9UPT5-6|EXOC7_HUMAN;sp|Q9UPT5|EXOC7_HUMAN	yes	no	0	0	0	0	0						1	1		1	51.15	51.15	3	0.0060957	13306	20190902_JH_MUT_Ubi_3	74.78	40.731	4824500	0	0	0	0	0	371590	498660	0	3954200			2039	2188	1796	5718;5719;5720	6021;6022;6023;6024	6022				4
HDGITVAVHK	Unmodified	1075.5774	0.57744226	206	sp|O43504|LTOR5_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1			1	1	1	19.229	19.229	3	0.0041039	4667	20190902_JH_WT_Ubi_3	98.044	57.986	38097000	1936500	581460	5663500	3846500	0	0	721960	7329300	18018000			2040	206	1797	5721;5722;5723;5724;5725;5726;5727	6025;6026;6027;6028;6029;6030;6031	6031				7
HDPTFEPLFPSETTLNPSLAQEAAK	Unmodified	2739.3392	0.33917563	2118	sp|Q9UGT4|SUSD2_HUMAN	yes	yes	0	0	0	0	0	1									45.952	45.952	3	0.0007252	12450	20190821_JH_EV_Ubi	67.864	23.286	1910400	1910400	0	0	0	0	0	0	0	0			2041	2118	1798	5728	6032	6032				1
HDVIVTIITAAK	Unmodified	1279.75	0.7499869	1397	sp|Q29RF7-3|PDS5A_HUMAN;sp|Q29RF7|PDS5A_HUMAN	yes	no	0	0	0	0	0			1							38.48	38.48	2	0.00031407	9320	20190821_JH_WT_Ubi	114.4	75.253	2015200	0	0	2015200	0	0	0	0	0	0			2042	1397	1799	5729	6033	6033				0
HDVMAHVHTFGHCCPK	Oxidation (M)	1947.8291	0.8290754	735	sp|P30566-2|PUR8_HUMAN;sp|P30566|PUR8_HUMAN	yes	no	0	0	0	1	0								1	1	18.253	18.253	4	0.015442	4528	20190902_JH_WT_Ubi_2	56.527	22.251	8424700	0	0	0	0	0	0	0	3754600	4670100			2043	735	1800	5730;5731	6034;6035	6034			457	2
HDYWLLAGIINHGYAR	Unmodified	1897.9588	0.95875089	1307	sp|Q14839|CHD4_HUMAN;sp|Q14839-2|CHD4_HUMAN	yes	no	0	0	0	0	0			1					1		43.856	43.856	3	8.6331E-26	13148	20190902_JH_WT_Ubi_2	179.46	141.06	4857100	0	0	3104500	0	0	0	0	1752600	0			2044	1307	1801	5732;5733	6036;6037	6037				2
HEAFESDLAAHQDR	Unmodified	1624.723	0.72299688	214;537	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|P35609-2|ACTN2_HUMAN;sp|P35609|ACTN2_HUMAN;sp|Q08043|ACTN3_HUMAN;sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1			1	1	23.367	23.367	3	2.4269E-15	5915	20190902_JH_WT_Ubi_3	167.22	132.47	91138000	4260700	790860	16614000	4660500	4123700	0	0	26892000	33795000			2045	214;537	1802	5734;5735;5736;5737;5738;5739;5740	6038;6039;6040;6041;6042;6043;6044	6044				7
HEAFETDFTVHK	Unmodified	1459.6732	0.67319314	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0		1	1							27.619	27.619	3	9.1393E-08	5518	20190821_JH_WT_Ubi	147.62	76.896	6285100	0	923200	5361900	0	0	0	0	0	0			2046	1262	1803	5741;5742	6045;6046	6046				2
HEALLYTWLAEHK	Unmodified	1609.8253	0.8252771	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	0			1							37.818	37.818	3	0.00012287	9084	20190821_JH_WT_Ubi	122.46	91.896	3074500	0	0	3074500	0	0	0	0	0	0			2047	1284	1804	5743	6047	6047				1
HECQANGPEDLNR	Deamidation (NQ)	1539.6372	0.63721834	1006	sp|P60981|DEST_HUMAN;sp|P60981-2|DEST_HUMAN	yes	no	0	1	0	0	0			1							20.72	20.72	3	0.005056	3806	20190821_JH_WT_Ubi	96.756	70.097	540320	0	0	540320	0	0	0	0	0	0			2048	1006	1805	5744	6048	6048	330			1
HEDGEFWMSFSDFLR	Oxidation (M)	1917.7992	0.79919829	602	sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN	yes	no	0	0	0	1	0								1		51.344	51.344	3	0.0015741	15349	20190902_JH_WT_Ubi_2	90.759	27.578	1595700	0	0	0	0	0	0	0	1595700	0			2049	602	1806	5745	6049	6049			369	1
HEFSVDMTCGGCAEAVSR	Unmodified	2011.8186	0.81862988	119	sp|O00244|ATOX1_HUMAN	yes	yes	0	0	0	0	0			1							31.74	31.74	3	2.528E-05	6849	20190821_JH_WT_Ubi	109.04	54.761	2043000	0	0	2043000	0	0	0	0	0	0			2050	119	1807	5746	6050	6050				1
HEFSVDMTCGGCAEAVSR	Oxidation (M)	2027.8135	0.8135445	119	sp|O00244|ATOX1_HUMAN	yes	yes	0	0	0	1	0								1		27.866	27.866	3	0.0014489	7610	20190902_JH_WT_Ubi_2	76.586	55.053	1752300	0	0	0	0	0	0	0	1752300	0			2051	119	1807	5747	6051	6051			54	1
HEGVFICR	Unmodified	1016.4862	0.48618441	647	sp|P22087|FBRL_HUMAN	yes	yes	0	0	0	0	0									1	23.748	23.748	2	0.027671	6140	20190902_JH_WT_Ubi_3	87.754	45.29	6760400	0	0	0	0	0	0	0	0	6760400			2052	647	1808	5748	6052	6052				1
HEGVSCDACLKGNFR	GlyGly (K)	1862.8152	0.81519948	2082	sp|Q9P0J7|KCMF1_HUMAN	yes	yes	0	0	1	0	1	1		1			1				23.86	23.86	3	0.0020764	5294	20190902_JH_MUT_Ubi_2	88.224	66.338	3265900	400520	0	1342100	0	0	1523200	0	0	0			2053	2082	1809	5749;5750;5751	6053;6054;6055	6054		1963		3
HEHQVMLMR	2 Oxidation (M)	1211.5539	0.5539464	1337	sp|Q15233-2|NONO_HUMAN;sp|Q15233|NONO_HUMAN	yes	no	0	0	0	2	0								1	1	13.632	13.632	3	0.034854	3188	20190902_JH_WT_Ubi_3	44.98	12.726	0	0	0	0	0	0	0	0	0	0			2054	1337	1810	5752;5753	6056;6057	6057				2
HELLLGAGSGPGAGQQQATPGALLQAGPPR	Unmodified	2848.4944	0.49438792	1769	sp|Q96DI7|SNR40_HUMAN;sp|Q96DI7-2|SNR40_HUMAN	yes	no	0	0	0	0	0	1	1						1	1	40.477	40.477	3	1.1039E-05	11549	20190902_JH_WT_Ubi_3	82.627	47.906	7642000	1660700	1796200	0	0	0	0	0	2964100	1221000			2055	1769	1811	5754;5755;5756;5757	6058;6059;6060;6061	6061				4
HELLQPFNVLYEK	Unmodified	1628.8562	0.85624288	2193	sp|Q9UQ80|PA2G4_HUMAN;sp|Q9UQ80-2|PA2G4_HUMAN	yes	no	0	0	0	0	0	1	1				1			1	41.536	41.536	2;3	0.0026504	10273	20190821_JH_MUT_Ubi	92.65	66.109	7645900	984010	1413600	0	0	0	2362200	0	0	2886100			2056	2193	1812	5758;5759;5760;5761	6062;6063;6064;6065	6063				3
HELLSLASSNHLGK	Unmodified	1504.7998	0.79979063	181	sp|O15372|EIF3H_HUMAN	yes	yes	0	0	0	0	0	1							1	1	28.323	28.323	3	7.6222E-05	5914	20190821_JH_EV_Ubi	118.76	88.034	22488000	3315900	0	0	0	0	0	0	8804700	10367000			2057	181	1813	5762;5763;5764	6066;6067;6068	6066				3
HELQANCYEEVK	Unmodified	1518.6773	0.67729224	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	0	0	0	1	1	2	2	1	1	1	1	1	23.516	23.516	2;3	6.8384E-08	4953	20190902_JH_EV_Ubi_3	150.51	108.04	137040000	3125300	1280400	39932000	11307000	2962600	2606700	2222300	51573000	22028000			2058	667	1814	5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775	6069;6070;6071;6072;6073;6074;6075;6076;6077;6078;6079	6072				10
HELQANCYEEVK	Deamidation (NQ)	1519.6613	0.66130782	667	sp|P23528|COF1_HUMAN	yes	yes	0	1	0	0	0			2					1		24.556	24.556	2;3	2.4523E-05	6529	20190902_JH_WT_Ubi_2	138.89	110.12	9237600	0	0	4124700	0	0	0	0	5112900	0			2059	667	1814	5776;5777;5778	6080;6081;6082	6082	239			1
HELQANCYEEVKDR	GlyGly (K)	1903.8483	0.84827374	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1	1	22.91	22.91	3	1.2093E-27	5055	20190902_JH_MUT_Ubi_2	186.29	149.66	56575000	5453700	4541600	9490600	0	1379900	7592500	5555800	7844200	14716000			2060	667	1815	5779;5780;5781;5782;5783;5784;5785;5786	6083;6084;6085;6086;6087;6088;6089;6090	6086		642		8
HELQANCYEEVKDR	GlyGly (K);Deamidation (NQ)	1904.8323	0.83228933	667	sp|P23528|COF1_HUMAN	yes	yes	0	1	1	0	1						1				23.16	23.16	3	0.016943	5160	20190902_JH_MUT_Ubi_2	70.41	39.368	0	0	0	0	0	0	0	0	0	0			2061	667	1815	5787	6091	6091	239	642		1
HELTEISNVDVETQSGKTVIR	GlyGly (K)	2468.2507	0.25069498	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								32.507	32.507	3	0.033052	6757	20190821_JH_MUT_Ubi	43.81	14.367	722350	0	722350	0	0	0	0	0	0	0			2062	1190	1816	5788	6092	6092				1
HEMPPHIYAITDTAYR	Oxidation (M)	1929.9043	0.90433206	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	1	0			1			1		1		30.072	30.072	3	0.00032787	6390	20190821_JH_WT_Ubi	102.63	50.935	22521000	0	0	7687000	0	0	2275900	0	12558000	0			2063	776	1817	5789;5790;5791	6093;6094;6095	6094			488	2
HEMPPHIYAITDTAYR	Unmodified	1913.9094	0.90941744	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0			1							32.252	32.252	3	0.019186	7009	20190821_JH_WT_Ubi	52.887	20.795	2808600	0	0	2808600	0	0	0	0	0	0			2064	776	1817	5792	6096	6096				1
HEQNIDCGGGYVK	Unmodified	1475.6463	0.64632646	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	0			1				1	1	1	21.4	21.4	3	1.5138E-09	4000	20190821_JH_WT_Ubi	158.58	116.89	31492000	0	0	8987400	0	0	0	798180	12829000	8877800			2065	702	1818	5793;5794;5795;5796	6097;6098;6099;6100	6098				4
HESGASIKIDEPLEGSEDR	GlyGly (K)	2182.0138	0.013818748	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		1			28.089	28.089	3;4	2.1811E-31	6267	20190902_JH_MUT_Ubi_3	182.09	145.45	14275000	2190200	1796200	2296400	2045900	2751200	0	3195100	0	0			2066	1033	1819	5797;5798;5799;5800;5801;5802	6101;6102;6103;6104;6105;6106;6107	6105		1010		7
HEVSASTQSTPASSR	Unmodified	1543.7227	0.72266253	1129	sp|Q01082|SPTB2_HUMAN	yes	yes	0	0	0	0	0	1									17.119	17.119	3	0.023363	2858	20190821_JH_EV_Ubi	51.771	25.23	773960	773960	0	0	0	0	0	0	0	0			2067	1129	1820	5803	6108	6108				1
HEYGSPGILEFFHHQLK	Unmodified	2038.0061	0.006095016	1522	sp|Q7L576|CYFP1_HUMAN;sp|Q7L576-3|CYFP1_HUMAN;sp|Q7L576-2|CYFP1_HUMAN;sp|Q96F07-2|CYFP2_HUMAN;sp|Q96F07|CYFP2_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	37.634	37.634	4	0.014393	11132	20190902_JH_WT_Ubi_2	52.009	21.526	36742000	0	0	16976000	0	0	2935100	0	4963800	11868000			2068	1522	1821	5804;5805;5806;5807	6109;6110;6111;6112	6111				4
HFADLLPGFLQAVNDSCYQNDDSVLK	Unmodified	2965.3916	0.39162191	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	0	0	0		1	1			1			1	53.397	53.397	3	1.006E-06	15177	20190821_JH_WT_Ubi	89.297	60.66	3893300	0	1280500	1795600	0	0	0	0	0	817240			2069	124	1822	5808;5809;5810;5811	6113;6114;6115;6116	6115				4
HFCPNVPIILVANK	Unmodified	1620.881	0.88101784	1055	sp|P62745|RHOB_HUMAN	yes	yes	0	0	0	0	0						1				39.636	39.636	3	0.0028598	11050	20190902_JH_MUT_Ubi_2	84.718	25.886	705200	0	0	0	0	0	705200	0	0	0			2070	1055	1823	5812	6117	6117				1
HFCPNVPIILVGNK	Unmodified	1606.8654	0.86536778	1025	sp|P61586|RHOA_HUMAN;sp|P08134|RHOC_HUMAN	yes	no	0	0	0	0	0	2	2	1	1	1	1	2	1	1	39.589	39.589	2;3	5.1082E-21	9827	20190821_JH_WT_Ubi	179.94	100.87	334560000	18581000	26170000	79495000	15148000	12158000	18590000	43211000	64752000	56452000			2071	1025	1824	5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824	6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133	6128				13
HFCPNVPIILVGNK	Deamidation (NQ)	1607.8494	0.84938336	1025	sp|P61586|RHOA_HUMAN;sp|P08134|RHOC_HUMAN	yes	no	0	1	0	0	0		1								39.939	39.939	2	0.0075569	9507	20190821_JH_MUT_Ubi	90.108	55.722	2494000	0	2494000	0	0	0	0	0	0	0			2072	1025	1824	5825	6134	6134	335			0
HFCPNVPIILVGNKK	Unmodified	1734.9603	0.9603308	1025	sp|P61586|RHOA_HUMAN;sp|P08134|RHOC_HUMAN	yes	no	0	0	0	0	1	1			1	1					34.454	34.454	3	3.6234E-15	8350	20190821_JH_EV_Ubi	164.13	119.88	19883000	8084200	0	0	5344300	6455000	0	0	0	0			2073	1025	1825	5826;5827;5828	6135;6136;6137	6135				3
HFGEKAPAPQPPSLPDR	GlyGly (K)	1956.9806	0.98060855	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1					1	1	1			28.123	28.123	3	0.00074784	6288	20190902_JH_EV_Ubi_3	91.592	43.452	11377000	0	0	0	0	7587100	2201900	1587600	0	0			2074	1614	1826	5829;5830;5831	6138;6139;6140	6138		1610		3
HFGLQILEHVVK	Unmodified	1418.8034	0.80341945	1977	sp|Q9HAV4|XPO5_HUMAN	yes	yes	0	0	0	0	0		1	1							38.795	38.795	3	6.5998E-05	9291	20190821_JH_WT_Ubi	108.98	69.969	433980	0	433980	0	0	0	0	0	0	0			2075	1977	1827	5832;5833	6141;6142	6142				2
HFHPLFEYFDYESR	Unmodified	1885.8424	0.84238373	1810	sp|Q96QK1|VPS35_HUMAN	yes	yes	0	0	0	0	0			1					1	1	41.25	41.25	3	0.00075211	12281	20190902_JH_WT_Ubi_2	103.11	80.388	6726900	0	0	2198100	0	0	0	0	3611900	916900			2076	1810	1828	5834;5835;5836	6143;6144;6145;6146	6144				4
HFIMQVVCEATQCPDTR	Unmodified	2090.9336	0.93360005	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	0	0	0			1							38.71	38.71	3	0.0017321	9408	20190821_JH_WT_Ubi	101.3	63.142	0	0	0	0	0	0	0	0	0	0			2077	1311	1829	5837	6147	6147				1
HFLDFQGSAIPQAMQKLVVTR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2517.2686	0.26859365	1617	sp|Q8N4Q0|PTGR3_HUMAN	yes	yes	0	2	1	1	1		1				1		1	1	53.806	53.806	3	0.011296	15504	20190902_JH_WT_Ubi_3	56.54	17.716	53685000	0	7886900	0	0	0	11410000	0	15888000	18500000			2078	1617	1830	5838;5839;5840;5841	6148;6149;6150;6151	6151	1136;1137;1138	1619	943	4
HFNAPSHIR	Unmodified	1077.5468	0.54681083	1021	sp|P61254|RL26_HUMAN	yes	yes	0	0	0	0	0			1					1	1	18.445	18.445	3	0.00032336	4486	20190902_JH_WT_Ubi_3	140.11	90.397	46323000	0	0	8058300	0	0	0	0	18020000	20245000			2079	1021	1831	5842;5843;5844	6152;6153;6154	6154				3
HFPKCPFIENQLQDTSR	GlyGly (K)	2230.0589	0.058935223	1243	sp|Q13489|BIRC3_HUMAN	yes	yes	0	0	1	0	1		1				1	1			33.16	33.16	3	0.00043602	7171	20190821_JH_MUT_Ubi	97.235	61.596	2251100	0	1215500	0	0	0	1035600	0	0	0			2080	1243	1832	5845;5846;5847	6155;6156;6157	6155		1311		3
HFSVEGQLEFR	Unmodified	1347.6571	0.65714914	455;465	sp|P08238|HS90B_HUMAN;sp|Q58FG1|HS904_HUMAN;sp|Q58FF7|H90B3_HUMAN;sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	no	no	0	0	0	0	0		1	1					1	1	34.021	34.021	3	0.0002805	7459	20190821_JH_MUT_Ubi	132.25	64.257	9183300	0	1298200	4776300	0	0	0	0	1713400	1395500			2081	465;455	1833	5848;5849;5850;5851	6158;6159;6160;6161	6158				4
HFTILDAPGHK	Unmodified	1234.6459	0.64585618	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|P15170|ERF3A_HUMAN;sp|Q8IYD1|ERF3B_HUMAN	yes	no	0	0	0	0	0								1	1	26.226	26.226	3	0.0022815	7101	20190902_JH_WT_Ubi_2	103.31	79.09	14979000	0	0	0	0	0	0	0	9183000	5795500			2082	566	1834	5852;5853	6162;6163	6162				2
HFVALSTNTTK	Deamidation (NQ)	1218.6245	0.62445203	437	sp|P06744|G6PI_HUMAN;sp|P06744-2|G6PI_HUMAN	yes	no	0	1	0	0	0				1		1				25.701	25.701	2	0.023276	5904	20190902_JH_MUT_Ubi_2	72.848	39.727	586600	0	0	0	0	0	586600	0	0	0			2083	437	1835	5854;5855	6164;6165	6165	159			1
HFVTISSPLATQIPQAVGAAYAAK	Unmodified	2440.3114	0.31144474	536	sp|P12694|ODBA_HUMAN;sp|P12694-2|ODBA_HUMAN	yes	no	0	0	0	0	0								1	1	44.094	44.094	3	0.0057031	13310	20190902_JH_WT_Ubi_2	52.464	22.828	4832200	0	0	0	0	0	0	0	2375700	2456500			2084	536	1836	5856;5857	6166;6167	6166				1
HFYQPIWTLVGAGAK	Unmodified	1686.8882	0.88821171	2263	sp|Q9Y6N5|SQOR_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	2	2	2	1	1	43.35	43.35	2;3	1.2692E-37	13087	20190902_JH_WT_Ubi_2	203.87	140.46	238450000	17221000	25541000	41780000	7023500	15811000	47637000	34400000	21280000	27755000			2085	2263	1837	5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868;5869	6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179	6178				10
HGAGAEISTVHPEQYAK	Unmodified	1793.8697	0.86966111	1670	sp|Q8TBX8-2|PI42C_HUMAN;sp|Q8TBX8-3|PI42C_HUMAN;sp|Q8TBX8|PI42C_HUMAN	yes	no	0	0	0	0	0						1	1		1	23.826	23.826	3	0.0037316	6183	20190902_JH_WT_Ubi_3	71.316	42.551	3072300	0	0	0	0	0	449180	633260	0	1989900			2086	1670	1838	5870;5871;5872	6180;6181;6182	6182				3
HGATVLTALGGILK	Unmodified	1349.8031	0.8030851	389	sp|P02144|MYG_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	41.633	41.633	3	1.2163E-07	12016	20190902_JH_WT_Ubi_3	142.76	93.463	8579100	0	413580	3745800	0	0	754830	601550	1566000	1497300			2087	389	1839	5873;5874;5875;5876;5877;5878	6183;6184;6185;6186;6187;6188	6188				6
HGESAWNLENR	Unmodified	1311.5956	0.59561152	612	sp|P18669|PGAM1_HUMAN	yes	yes	0	0	0	0	0								1		25.603	25.603	3	0.0079973	6853	20190902_JH_WT_Ubi_2	85.924	53.889	1627100	0	0	0	0	0	0	0	1627100	0			2088	612	1840	5879	6189	6189				1
HGEVCPAGWKPGSDTIKPDVQK	Unmodified	2405.1798	0.17977864	1170	sp|Q06830|PRDX1_HUMAN	yes	yes	0	0	0	0	2					1					26.918	26.918	4	0.00045881	5944	20190902_JH_EV_Ubi_3	77.031	37.039	3976500	0	0	0	0	3976500	0	0	0	0			2089	1170	1841	5880	6190	6190				1
HGEVCPAGWKPGSDTIKPDVQK	GlyGly (K)	2519.2227	0.22270609	1170	sp|Q06830|PRDX1_HUMAN	yes	yes	0	0	1	0	2			1							27.601	27.601	4	0.0019862	5577	20190821_JH_WT_Ubi	65.47	24.502	3287500	0	0	3287500	0	0	0	0	0	0			2090	1170	1841	5881	6191	6191		1162		1
HGFDPQSPLCVHIMLSGTVTK	Unmodified	2323.1453	0.14530739	297	sp|O75629|CREG1_HUMAN	yes	yes	0	0	0	0	0			1							39.87	39.87	3	5.5843E-06	9881	20190821_JH_WT_Ubi	94.911	70.87	3493700	0	0	3493700	0	0	0	0	0	0			2091	297	1842	5882	6192	6192				1
HGFFVNPSDSVAVIAANIFSIPYFQQTGVR	Unmodified	3280.6669	0.66693255	788	sp|P36871|PGM1_HUMAN;sp|P36871-3|PGM1_HUMAN;sp|P36871-2|PGM1_HUMAN	yes	no	0	0	0	0	0								1		56.912	56.912	3	7.7492E-17	16644	20190902_JH_WT_Ubi_2	120.92	86.078	526900	0	0	0	0	0	0	0	526900	0			2092	788	1843	5883	6193	6193				1
HGGEDYVFSLLTGYCEPPTGVSLR	Unmodified	2653.2483	0.24825214	469	sp|P08574|CY1_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	51.24	51.24	3	1.0094E-57	14396	20190821_JH_WT_Ubi	204.47	169.04	18407000	0	614820	8854200	0	0	0	0	4968100	3969700			2093	469	1844	5884;5885;5886;5887	6194;6195;6196;6197	6195				4
HGGSLGLGLAAMGTAR	Oxidation (M)	1483.7565	0.75654561	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	0	1	0		1				1		1		28.623	28.623	3	3.7916E-05	8030	20190902_JH_WT_Ubi_2	125.22	81.226	5186200	0	0	0	0	0	5186200	0	0	0			2094	1833	1845	5888;5889;5890	6198;6199;6200	6200			1011	3
HGGTIPIVPTAEFQDR	Unmodified	1736.8846	0.8845829	374	sp|P00367|DHE3_HUMAN;sp|P00367-2|DHE3_HUMAN;sp|P00367-3|DHE3_HUMAN	yes	no	0	0	0	0	0			1					1	1	36.5	36.5	3	0.0014644	10699	20190902_JH_WT_Ubi_2	84.508	25.622	15095000	0	0	4575100	0	0	0	0	5049200	5470900			2095	374	1846	5891;5892;5893	6201;6202;6203	6202				3
HGGVIHIYVDK	Unmodified	1236.6615	0.66150624	1294	sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN	yes	no	0	0	0	0	0	1	1	1							24.853	24.853	3	0.00087936	4180	20190821_JH_MUT_Ubi	112.3	70.008	7280900	1469700	1396000	4415200	0	0	0	0	0	0			2096	1294	1847	5894;5895;5896	6204;6205;6206	6205				3
HGLEVIYMIEPIDEYCVQQLK	Oxidation (M)	2592.2604	0.26039673	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	46.214	46.214	3	4.804E-111	12565	20190821_JH_WT_Ubi	247.44	205.53	65381000	3748900	5486900	20378000	872910	1757100	3689100	3714900	14469000	11265000			2097	455	1848	5897;5898;5899;5900;5901;5902;5903;5904;5905	6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218	6215			257	12
HGLEVIYMIEPIDEYCVQQLK	Unmodified	2576.2655	0.2654821	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	49.652	49.652	3	9.5441E-82	13894	20190821_JH_WT_Ubi	230.48	188.08	26282000	0	4423900	13472000	0	0	0	929490	1570100	5885700			2098	455	1848	5906;5907;5908;5909;5910	6219;6220;6221;6222;6223;6224	6222				6
HGLLVPNNTTDQELQHIR	Unmodified	2084.0763	0.076299846	988	sp|P56537|IF6_HUMAN	yes	yes	0	0	0	0	0	1	1	2	1	1	1	1	1	1	31.14	31.14	3;4	3.0572E-43	6727	20190821_JH_WT_Ubi	202.79	156.51	51568000	6083800	1611300	15484000	2791700	2688500	4384800	1759700	10037000	6727500			2099	988	1849	5911;5912;5913;5914;5915;5916;5917;5918;5919;5920	6225;6226;6227;6228;6229;6230;6231;6232;6233;6234	6232				10
HGLQPALLVHWAECLQK	Unmodified	1999.0462	0.046185692	896	sp|P49792|RBP2_HUMAN	yes	yes	0	0	0	0	0			1							42.89	42.89	3	0.00013055	11167	20190821_JH_WT_Ubi	104.94	70.557	5439600	0	0	5439600	0	0	0	0	0	0			2100	896	1850	5921	6235	6235				1
HGVPISVTGIAQVK	Unmodified	1404.8089	0.80889876	307	sp|O75955|FLOT1_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1		1	1	33.126	33.126	3	9.6068E-12	7748	20190821_JH_EV_Ubi	158.25	120.02	24671000	2144800	1469900	5409700	0	1960100	1335500	0	7069000	5282400			2101	307	1851	5922;5923;5924;5925;5926;5927;5928	6236;6237;6238;6239;6240;6241;6242	6236				7
HGVSCVSLWPGIVQTELLK	Unmodified	2122.1245	0.12449559	1799	sp|Q96LJ7|DHRS1_HUMAN	yes	yes	0	0	0	0	0		1				1				47.426	47.426	3	0.010492	12464	20190821_JH_MUT_Ubi	55.589	20.413	1339200	0	736710	0	0	0	602500	0	0	0			2102	1799	1852	5929;5930	6243;6244	6243				2
HGYPLIIYDVFPDACK	Unmodified	1906.9288	0.9287559	745	sp|P31937|3HIDH_HUMAN	yes	yes	0	0	0	0	0			1							47.501	47.501	3	0.0014482	12992	20190821_JH_WT_Ubi	84.62	54.887	5473600	0	0	5473600	0	0	0	0	0	0			2103	745	1853	5931	6245	6245				1
HHAAYVNNLNVTEEK	Unmodified	1737.8434	0.84344636	405	sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-4|SODM_HUMAN;sp|P04179-2|SODM_HUMAN	yes	no	0	0	0	0	0			1		1			1	1	23.4	23.4	3	8.2832E-08	4472	20190821_JH_WT_Ubi	139.86	99.745	61649000	0	0	11612000	0	0	0	0	21880000	28157000			2104	405	1854	5932;5933;5934;5935	6246;6247;6248;6249	6247				4
HHAAYVNNLNVTEEK	Deamidation (NQ)	1738.8275	0.82746195	405	sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-4|SODM_HUMAN;sp|P04179-2|SODM_HUMAN	yes	no	0	1	0	0	0								1		24.615	24.615	3	0.019192	6543	20190902_JH_WT_Ubi_2	69.258	28.49	4998800	0	0	0	0	0	0	0	4998800	0			2105	405	1854	5936	6250	6250	139			1
HHCPNTPIILVGTK	Unmodified	1585.8399	0.83988131	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1		1	1	1	1	27.358	27.358	3	7.1506E-28	7093	20190902_JH_WT_Ubi_3	187.74	138.32	257470000	27165000	10084000	52709000	14474000	0	23721000	16185000	48498000	64637000			2106	1075	1855	5937;5938;5939;5940;5941;5942;5943;5944	6251;6252;6253;6254;6255;6256;6257;6258	6258				8
HHCPNTPIILVGTKLDLR	GlyGly (K)	2197.179	0.17899078	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	1	0	1		1	1			1	1			35.079	35.079	4	6.4287E-07	8053	20190821_JH_MUT_Ubi	122.16	94.444	30700000	0	6473700	9438800	0	0	9986100	4801200	0	0			2107	1075	1856	5945;5946;5947;5948	6259;6260;6261;6262	6259		1058		4
HHCPSTPIILVGTK	Unmodified	1558.829	0.82898227	565	sp|P15153|RAC2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	27.724	27.724	3	0.005682	5700	20190821_JH_WT_Ubi	75.483	44.486	47824000	0	0	12200000	0	0	0	0	19747000	15877000			2108	565	1857	5949;5950;5951	6263;6264;6265	6263				3
HHGAQSAALQK	Unmodified	1146.5894	0.58940393	1920	sp|Q9GZV1-2|ANKR2_HUMAN;sp|Q9GZV1|ANKR2_HUMAN	yes	no	0	0	0	0	0		1								6.2826	6.2826	3	0.010812	1041	20190821_JH_MUT_Ubi	78.692	42.275	125790	0	125790	0	0	0	0	0	0	0			2109	1920	1858	5952	6266	6266				1
HHGPQTLYLPVTLSSIPVFQR	Unmodified	2389.2906	0.29064972	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	0		1	2			2	3	2		46.111	46.111	3;4	0.00021362	12617	20190821_JH_WT_Ubi	79.462	55.736	592360000	0	31948000	315840000	0	0	44868000	43182000	156520000	0			2110	1304	1859	5953;5954;5955;5956;5957;5958;5959;5960;5961;5962	6267;6268;6269;6270;6271;6272;6273;6274;6275;6276	6273				9
HHITPLLSAVYEGHVSCVK	Unmodified	2146.0993	0.099343474	994	sp|P58546|MTPN_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	2	1	1	32.4	32.4	3;4	3.4369E-09	7243	20190821_JH_WT_Ubi	129.05	102.25	207790000	19208000	10030000	6030800	12954000	0	20968000	9828700	62856000	65915000			2111	994	1860	5963;5964;5965;5966;5967;5968;5969;5970;5971	6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287	6284				11
HHNSTAELQKAEAK	GlyGly (K)	1676.823	0.82304527	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1		1		1	1	1	2	1		15.132	15.132	3;4	2.9025E-07	3315	20190902_JH_EV_Ubi_2	139.74	95.753	18028000	0	633360	0	2418900	3536000	6883900	797060	3759100	0			2112	760	1861	5972;5973;5974;5975;5976;5977;5978	6288;6289;6290;6291;6292;6293;6294	6288		737		7
HHNSTAELQKAEAK	GlyGly (K);Deamidation (NQ)	1677.8071	0.80706086	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	0	1							1		1	16.926	16.926	4	0.0018386	3631	20190902_JH_MUT_Ubi_3	87.719	42.872	2842600	0	0	0	0	0	0	1198600	0	1644000			2113	760	1861	5979;5980	6295;6296	6295	270	737		2
HHSLGGQYGVQGFPTIK	Unmodified	1824.9271	0.92711641	1327	sp|Q15084-3|PDIA6_HUMAN;sp|Q15084|PDIA6_HUMAN;sp|Q15084-4|PDIA6_HUMAN;sp|Q15084-5|PDIA6_HUMAN;sp|Q15084-2|PDIA6_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	2	1	1	31.462	31.462	3;4	1.1213E-10	7670	20190902_JH_MUT_Ubi_2	144.15	107.86	302130000	42997000	18195000	52228000	38313000	14641000	32880000	23270000	35906000	43699000			2114	1327	1862	5981;5982;5983;5984;5985;5986;5987;5988;5989;5990	6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307	6301				11
HHSLGGQYGVQGFPTIK	Deamidation (NQ)	1825.9111	0.911132	1327	sp|Q15084-3|PDIA6_HUMAN;sp|Q15084|PDIA6_HUMAN;sp|Q15084-4|PDIA6_HUMAN;sp|Q15084-5|PDIA6_HUMAN;sp|Q15084-2|PDIA6_HUMAN	yes	no	0	1	0	0	0					1	1		1	1	32.093	32.093	3	0.0019405	7643	20190902_JH_EV_Ubi_3	100.58	57.764	19261000	0	0	0	0	3260400	3987700	0	5626800	6385800			2115	1327	1862	5991;5992;5993;5994	6308;6309;6310;6311	6308	1041			4
HHVLGTITTDK	Unmodified	1220.6513	0.65133548	1102	sp|Q5JPE7-3|NOMO2_HUMAN;sp|Q5JPE7-2|NOMO2_HUMAN;sp|P69849|NOMO3_HUMAN;sp|Q5JPE7|NOMO2_HUMAN;sp|Q15155|NOMO1_HUMAN	yes	no	0	0	0	0	0									1	20.162	20.162	3	0.016742	5044	20190902_JH_WT_Ubi_3	69.672	35.285	1242800	0	0	0	0	0	0	0	0	1242800			2116	1102	1863	5995	6312	6312				1
HIADLAGNSEVILPVPAFNVINGGSHAGNK	Unmodified	3010.5625	0.56246748	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	0	0	0	1		1	1	1					45.507	45.507	4	0.00030933	12401	20190821_JH_EV_Ubi	61.488	18.871	20246000	12088000	0	2624100	2609700	2924000	0	0	0	0			2117	435	1864	5996;5997;5998;5999	6313;6314;6315;6316;6317	6313				5
HIADLAGNSEVILPVPAFNVINGGSHAGNK	Deamidation (NQ)	3011.5465	0.54648307	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	1	0	0	0	1	1	1	1	1	1	1	1	1	46.63	46.63	3;4	2.3345E-07	14081	20190902_JH_WT_Ubi_2	87.792	46.584	425130000	83469000	41307000	120470000	22621000	2419600	31645000	26688000	36453000	60061000			2118	435	1864	6000;6001;6002;6003;6004;6005;6006;6007;6008	6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328	6327	155;156;157;158			11
HIADLAGNSEVILPVPAFNVINGGSHAGNK	2 Deamidation (NQ)	3012.5305	0.53049865	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	2	0	0	0		1	2							48.321	48.321	4	9.4811E-05	13431	20190821_JH_WT_Ubi	72.028	35.733	14926000	0	1982700	12943000	0	0	0	0	0	0			2119	435	1864	6009;6010;6011	6329;6330;6331	6331	155;156;157;158			3
HIANYISGIQTIGHR	Unmodified	1678.8903	0.89033698	1346	sp|Q15393-3|SF3B3_HUMAN;sp|Q15393|SF3B3_HUMAN	yes	no	0	0	0	0	0						1	1	1	1	30.924	30.924	3	2.7287E-28	7635	20190902_JH_MUT_Ubi_2	188.19	139.66	34972000	0	0	0	0	0	6327200	2077700	14505000	12063000			2120	1346	1865	6012;6013;6014;6015	6332;6333;6334;6335	6332				4
HIDCAHVYQNENEVGVAIQEK	Unmodified	2452.1441	0.14412141	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	29.794	29.794	3;4	4.0083E-111	6268	20190821_JH_WT_Ubi	247.28	206.89	83695000	0	0	15745000	0	0	0	0	27824000	40125000			2121	563	1866	6016;6017;6018;6019	6336;6337;6338;6339;6340	6337				5
HIDCAHVYQNENEVGVAIQEK	Deamidation (NQ)	2453.1281	0.128137	563	sp|P15121|ALDR_HUMAN	yes	yes	0	1	0	0	0									1	30.308	30.308	3	5.0456E-08	8193	20190902_JH_WT_Ubi_3	113.23	84.484	2270200	0	0	0	0	0	0	0	0	2270200			2122	563	1866	6020	6341	6341	212			1
HIDCAYVYQNEHEVGEAIQEK	Unmodified	2531.1387	0.13870169	227	sp|O60218|AK1BA_HUMAN	yes	yes	0	0	0	0	0		1								32.411	32.411	3	0.029242	6708	20190821_JH_MUT_Ubi	40.315	17.216	703990	0	703990	0	0	0	0	0	0	0			2123	227	1867	6021	6342	6342				1
HIDSAHLYNNEEQVGLAIR	Unmodified	2178.0818	0.081779155	1157	sp|Q04828|AK1C1_HUMAN;sp|P42330|AK1C3_HUMAN	yes	no	0	0	0	0	0	1	1		1	1					33.055	33.055	4	0.019341	7852	20190902_JH_EV_Ubi_2	45.438	15.355	8678300	2899300	1602800	0	2147800	2028300	0	0	0	0			2124	1157	1868	6022;6023;6024;6025	6343;6344;6345;6346	6344				4
HIFENVIGPKGMLK	Oxidation (M);GlyGly (K)	1711.908	0.90796088	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN	yes	no	0	0	1	1	1	1	1			1	1	1	1	1	30.421	30.421	3	0.0030439	6242	20190821_JH_MUT_Ubi	91.202	59.375	39148000	3063500	5519500	0	0	2281800	7951800	11158000	5369500	3804300			2125	760	1869	6026;6027;6028;6029;6030;6031;6032	6347;6348;6349;6350;6351;6352;6353	6349		738;739	478	7
HIHIPLLVK	Unmodified	1068.6808	0.68078512	1980	sp|Q9HBH5|RDH14_HUMAN	yes	yes	0	0	0	0	0								1	1	32.331	32.331	3	0.0098476	8799	20190902_JH_WT_Ubi_3	86.794	86.794	7746800	0	0	0	0	0	0	0	3096500	4650300			2126	1980	1870	6033;6034	6354;6355	6355				2
HIHITQATETTTTR	Unmodified	1608.822	0.82198264	1299	sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN;sp|Q14677|EPN4_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1	1	1	1	20.138	20.138	3	3.4482E-07	3532	20190821_JH_EV_Ubi	135.14	96.738	28933000	3571200	873790	0	2987500	3470800	1553900	1155300	8499300	6821300			2127	1299	1871	6035;6036;6037;6038;6039;6040;6041;6042	6356;6357;6358;6359;6360;6361;6362;6363	6356				8
HIHNCFSNLGCFLLPHPGLK	Unmodified	2360.167	0.16704588	1659	sp|Q8NHH9-3|ATLA2_HUMAN;sp|Q8NHH9-5|ATLA2_HUMAN;sp|Q8NHH9-4|ATLA2_HUMAN;sp|Q8NHH9-2|ATLA2_HUMAN;sp|Q8NHH9|ATLA2_HUMAN	yes	no	0	0	0	0	0			1							40.567	40.567	4	5.5128E-06	10170	20190821_JH_WT_Ubi	109.1	80.63	8313300	0	0	8313300	0	0	0	0	0	0			2128	1659	1872	6043	6364	6364				1
HIISHLFSQPK	Unmodified	1305.7194	0.71935547	1194	sp|Q12769|NU160_HUMAN	yes	yes	0	0	0	0	0			1					1	1	27.142	27.142	3	0.0013101	7311	20190902_JH_WT_Ubi_2	108.9	37.452	14988000	0	0	3339800	0	0	0	0	6789900	4858900			2129	1194	1873	6044;6045;6046	6365;6366;6367	6366				3
HIITLGQVIHK	Unmodified	1257.7557	0.75574098	1627	sp|Q8NB16-2|MLKL_HUMAN;sp|Q8NB16|MLKL_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	2	29.003	29.003	2;3	1.6011E-69	6095	20190821_JH_WT_Ubi	236.92	185.65	68369000	5671000	1554500	14304000	5663600	3668900	3930300	1837700	16851000	14889000			2130	1627	1874	6047;6048;6049;6050;6051;6052;6053;6054;6055;6056	6368;6369;6370;6371;6372;6373;6374;6375;6376;6377	6374				9
HILAILQDCPSLRPPIDHLCELLPR	Unmodified	2975.5837	0.58373697	589	sp|P16435|NCPR_HUMAN	yes	yes	0	0	0	0	1			1							48.728	48.728	4	0.019794	13551	20190821_JH_WT_Ubi	44.963	19.75	4703400	0	0	4703400	0	0	0	0	0	0			2131	589	1875	6057	6378	6378				1
HILGFDTGDAVLNEAAQILR	Unmodified	2152.1277	0.12766671	2196	sp|Q9Y224|RTRAF_HUMAN	yes	yes	0	0	0	0	0	1	1	1							53.36	53.36	3	2.5497E-10	14307	20190821_JH_EV_Ubi	134.21	75.325	5895100	2158100	1561800	2175200	0	0	0	0	0	0			2132	2196	1876	6058;6059;6060	6379;6380;6381	6379				3
HILLAVANDEELNQLLK	Unmodified	1932.068	0.068026571	281;2083	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN;sp|Q9P0M6|H2AW_HUMAN	no	no	0	0	0	0	0								1	1	45.676	45.676	3	3.5189E-06	13812	20190902_JH_WT_Ubi_2	121.13	79.747	4866200	0	0	0	0	0	0	0	2920900	1945300			2133	281;2083	1877	6061;6062	6382;6383	6382				2
HILVINDSQFDDEGVYTAEVEGKK	Deamidation (NQ)	2706.3025	0.30245578	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN;sp|Q8WZ42-3|TITIN_HUMAN;sp|Q8WZ42-10|TITIN_HUMAN;sp|Q8WZ42-9|TITIN_HUMAN	yes	no	0	1	0	0	1		1								56.462	56.462	3	0.032	14995	20190821_JH_MUT_Ubi	43.349	11.431	4012000	0	4012000	0	0	0	0	0	0	0			2134	1705	1878	6063	6384	6384	554			1
HIPGAAFFDIDQCSDR	Unmodified	1847.8261	0.82608174	676	sp|P25325|THTM_HUMAN;sp|P25325-2|THTM_HUMAN	yes	no	0	0	0	0	0			1							40.478	40.478	3	0.009557	10158	20190821_JH_WT_Ubi	62.69	23.527	1073900	0	0	1073900	0	0	0	0	0	0			2135	676	1879	6064	6385	6385				1
HISEGCVFIYCQVGEK	Unmodified	1924.8812	0.88115378	1864	sp|Q9BRA2|TXD17_HUMAN	yes	yes	0	0	0	0	0	1	1	1							35.089	35.089	3	9.4156E-10	7965	20190821_JH_WT_Ubi	135.14	92.928	8697800	864640	994740	6838400	0	0	0	0	0	0			2136	1864	1880	6065;6066;6067	6386;6387;6388	6388				3
HISPDQVPVEYGGTMTDPDGNPK	Oxidation (M)	2469.1118	0.11181823	311	sp|O76054-5|S14L2_HUMAN;sp|O76054|S14L2_HUMAN;sp|O76054-4|S14L2_HUMAN	yes	no	0	0	0	1	0								1		31.779	31.779	3	0.0038569	8998	20190902_JH_WT_Ubi_2	85.969	42.12	2936700	0	0	0	0	0	0	0	2936700	0			2137	311	1881	6068	6389	6389			146	0
HISVLVPCFLTFPK	Unmodified	1656.9062	0.90616996	2227	sp|Q9Y3T9|NOC2L_HUMAN	yes	yes	0	0	0	0	0			1							48.024	48.024	3	0.0083851	13229	20190821_JH_WT_Ubi	71.558	27.369	1770100	0	0	1770100	0	0	0	0	0	0			2138	2227	1882	6069	6390	6390				1
HITTLQASFLTK	Unmodified	1358.7558	0.75580056	2159	sp|Q9UL25|RAB21_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1	1	1	33.06	33.06	3	1.6437E-07	7238	20190821_JH_MUT_Ubi	124.6	80.035	43212000	0	0	10172000	631970	0	2363100	3048900	13262000	13735000			2139	2159	1883	6070;6071;6072;6073;6074;6075;6076;6077	6391;6392;6393;6394;6395;6396;6397;6398	6393				8
HIVEQMVAFIGAVPGIGPSLQK	Oxidation (M)	2306.2457	0.24567336	1780	sp|Q96GC9-2|VMP1_HUMAN;sp|Q96GC9|VMP1_HUMAN	yes	no	0	0	0	1	0	1	1	1			1	1	1	1	44.117	44.117	3	5.878E-06	11750	20190821_JH_WT_Ubi	93.776	63.349	16497000	2119100	1016800	3550200	0	0	1255700	2532300	1892800	4130000			2140	1780	1884	6078;6079;6080;6081;6082;6083;6084	6399;6400;6401;6402;6403;6404;6405	6403			1001	7
HIVEQMVAFIGAVPGIGPSLQK	Unmodified	2290.2508	0.25075874	1780	sp|Q96GC9-2|VMP1_HUMAN;sp|Q96GC9|VMP1_HUMAN	yes	no	0	0	0	0	0									1	52.431	52.431	3	0.01723	15231	20190902_JH_WT_Ubi_3	46.356	6.6717	799820	0	0	0	0	0	0	0	0	799820			2141	1780	1884	6085	6406	6406				1
HIVLSGGSTMYPGLPSR	Oxidation (M)	1786.9036	0.90360378	1016	sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1	1	33.051	33.051	3	9.7813E-08	7164	20190821_JH_MUT_Ubi	125.97	87.786	174520000	0	7054400	27711000	0	0	11228000	15213000	58499000	54816000			2142	1016	1885	6086;6087;6088;6089;6090;6091	6407;6408;6409;6410;6411;6412	6407			631	6
HIVLSGGSTMYPGLPSR	Unmodified	1770.9087	0.90868916	1016	sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	35.558	35.558	3	0.0012132	8270	20190821_JH_WT_Ubi	82.59	45.577	41802000	0	3640400	12975000	0	0	3468400	3345800	8466700	9905800			2143	1016	1885	6092;6093;6094;6095;6096;6097	6413;6414;6415;6416;6417;6418	6416				6
HIYYITGETK	Unmodified	1223.6186	0.61863837	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q58FG0|HS905_HUMAN	yes	no	0	0	0	0	0									1	25.692	25.692	2	0.011711	6736	20190902_JH_WT_Ubi_3	91.853	48.73	60588000	0	0	0	0	0	0	0	0	60588000			2144	455	1886	6098	6419	6419				0
HKLSVEAPPK	GlyGly (K)	1218.6721	0.67207093	956	sp|P53990-6|IST1_HUMAN	yes	yes	0	0	1	0	1						1				18.616	18.616	3	0.027215	4112	20190902_JH_MUT_Ubi_2	68.786	17.258	1353900	0	0	0	0	0	1353900	0	0	0			2145	956	1887	6099	6420	6420		920		1
HKMTTLTPAYHAENYSPEDNR	Oxidation (M);GlyGly (K)	2604.1663	0.16631342	1470	sp|Q6IA69-2|NADE_HUMAN;sp|Q6IA69|NADE_HUMAN	yes	no	0	0	1	1	1									1	23.575	23.575	4	0.0030508	6059	20190902_JH_WT_Ubi_3	62.589	40.472	3033400	0	0	0	0	0	0	0	0	3033400			2146	1470	1888	6100	6421	6421		1481	895	1
HLAGVPLIGWVLR	Unmodified	1429.8558	0.85578937	1657	sp|Q8NFW8-2|NEUA_HUMAN;sp|Q8NFW8|NEUA_HUMAN	yes	no	0	0	0	0	0			1							48.869	48.869	3	0.0043702	13565	20190821_JH_WT_Ubi	84.687	63.954	1315400	0	0	1315400	0	0	0	0	0	0			2147	1657	1889	6101	6422	6422				1
HLAILGAGLMGAGIAQVSVDK	Oxidation (M)	2036.1088	0.10884553	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	1	0	1		1				1	1		41.914	41.914	3	1.3016E-67	10755	20190821_JH_WT_Ubi	209.23	167.32	45339000	1029800	0	28326000	0	0	0	6385900	9597300	0			2148	818	1890	6102;6103;6104;6105	6423;6424;6425;6426;6427;6428	6425			520	6
HLAILGAGLMGAGIAQVSVDK	Unmodified	2020.1139	0.11393091	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0		1	1				1	1	1	45.638	45.638	3	1.811E-29	12395	20190821_JH_WT_Ubi	166.77	129.78	21676000	0	0	15472000	0	0	0	2137600	1856400	2210100			2149	818	1890	6106;6107;6108;6109;6110	6429;6430;6431;6432;6433;6434	6431				6
HLAPPGLHPVPGGVFPVPPAAVVLMK	Unmodified	2596.4716	0.47159097	1206	sp|Q12996|CSTF3_HUMAN	yes	yes	0	0	0	0	0			1							47.616	47.616	4	0.024552	13073	20190821_JH_WT_Ubi	34.405	21.972	3509200	0	0	3509200	0	0	0	0	0	0			2150	1206	1891	6111	6435	6435				1
HLAPPGLHPVPGGVFPVPPAAVVLMK	Oxidation (M)	2612.4665	0.46650559	1206	sp|Q12996|CSTF3_HUMAN	yes	yes	0	0	0	1	0								1		44.71	44.71	4	0.013858	13421	20190902_JH_WT_Ubi_2	43.497	22.127	1371300	0	0	0	0	0	0	0	1371300	0			2151	1206	1891	6112	6436	6436			762	1
HLATHFNLLIGAEAQHQK	Unmodified	2027.0701	0.070092256	1558	sp|Q86W92-3|LIPB1_HUMAN;sp|Q86W92-4|LIPB1_HUMAN;sp|Q86W92-2|LIPB1_HUMAN;sp|Q86W92|LIPB1_HUMAN	yes	no	0	0	0	0	0			1					1	1	30.668	30.668	4	4.9192E-11	8187	20190902_JH_WT_Ubi_3	135.61	104.9	13533000	0	0	6929000	0	0	0	0	3324900	3279100			2152	1558	1892	6113;6114;6115	6437;6438;6439	6439				3
HLCCLQALSAVSTHPSIVK	Unmodified	2120.0871	0.087064228	1828	sp|Q96T76-5|MMS19_HUMAN;sp|Q96T76-9|MMS19_HUMAN;sp|Q96T76|MMS19_HUMAN;sp|Q96T76-8|MMS19_HUMAN	yes	no	0	0	0	0	0						1			1	34.221	34.221	3	3.1577E-06	8968	20190902_JH_MUT_Ubi_2	111.33	72.814	3899500	0	0	0	0	0	964050	0	0	2935500			2153	1828	1893	6116;6117	6440;6441	6440				2
HLEIIYAINQR	Unmodified	1368.7514	0.75138388	523	sp|P11216|PYGB_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	35.052	35.052	3	0.0002508	8097	20190821_JH_WT_Ubi	133.23	60.379	17422000	0	563030	7607800	0	0	865410	907230	3915300	3563700			2154	523	1894	6118;6119;6120;6121;6122;6123	6442;6443;6444;6445;6446;6447	6445				6
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0	1	1	1					1	1	33.345	33.345	3	3.7525E-11	9523	20190902_JH_WT_Ubi_2	151.07	88.39	107700000	9932900	3888900	31624000	0	0	0	0	32234000	30021000			2155	465	1895	6124;6125;6126;6127;6128	6448;6449;6450;6451;6452	6451				5
HLEINPDHSIIETLR	Unmodified	1785.9373	0.93734675	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	35.287	35.287	3	3.992E-29	10292	20190902_JH_WT_Ubi_2	194.01	156.22	279070000	26685000	13764000	80478000	14786000	11650000	21167000	20661000	48249000	41626000			2156	455	1896	6129;6130;6131;6132;6133;6134;6135;6136;6137	6453;6454;6455;6456;6457;6458;6459;6460;6461	6460				9
HLEINPDHSIIETLR	Deamidation (NQ)	1786.9214	0.92136233	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	1	0	0	0						1				35.056	35.056	2	0.032842	9297	20190902_JH_MUT_Ubi_2	53.252	21.409	0	0	0	0	0	0	0	0	0	0			2157	455	1896	6138	6462	6462	167			1
HLEMNPHFGSHR	Oxidation (M)	1476.6681	0.66806496	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	1	0	1		1	1	1			1	1	16.911	16.911	3;4	0.00065589	3573	20190902_JH_EV_Ubi_2	116.54	85.988	96173000	3073700	0	4428800	3751500	4531700	0	0	43299000	37089000			2158	1182	1897	6139;6140;6141;6142;6143;6144	6463;6464;6465;6466;6467;6468	6464			740	6
HLEMNPHFGSHR	Unmodified	1460.6732	0.67315033	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	0			1					2	1	20.864	20.864	3;4	0.0019336	5177	20190902_JH_WT_Ubi_3	103.43	60.687	36634000	0	0	5551600	0	0	0	0	23249000	7833100			2159	1182	1897	6145;6146;6147;6148	6469;6470;6471;6472	6472				3
HLEVLHSLLK	Unmodified	1187.7026	0.70264277	1146	sp|Q03001|DYST_HUMAN;sp|Q03001-8|DYST_HUMAN;sp|Q03001-14|DYST_HUMAN	yes	no	0	0	0	0	0			1							32.385	32.385	3	1.196E-05	7043	20190821_JH_WT_Ubi	109.83	53.283	0	0	0	0	0	0	0	0	0	0			2160	1146	1898	6149	6473	6473				1
HLFAILGGSEGK	Unmodified	1227.6612	0.66117189	1717	sp|Q92616|GCN1_HUMAN	yes	yes	0	0	0	0	0	1		1							35.403	35.403	3	0.012724	8541	20190821_JH_EV_Ubi	72.2	40.604	1223300	262520	0	960820	0	0	0	0	0	0			2161	1717	1899	6150;6151	6474;6475	6474				2
HLFELCICQILHEK	Unmodified	1838.9171	0.91714535	187	sp|O15439|MRP4_HUMAN;sp|O15439-4|MRP4_HUMAN;sp|O15439-3|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	0	0	0			1							42.9	42.9	3	0.0035223	11181	20190821_JH_WT_Ubi	82.55	50.723	2232900	0	0	2232900	0	0	0	0	0	0			2162	187	1900	6152	6476	6476				1
HLGGIPWTYAEDAVPTLTPCR	Unmodified	2353.1525	0.15250126	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0			1							46.488	46.488	3	0.0021064	12607	20190821_JH_WT_Ubi	65.924	25.839	7299100	0	0	7299100	0	0	0	0	0	0			2163	744	1901	6153	6477	6477				1
HLGIVDAFQQGK	Unmodified	1311.6935	0.69353465	906	sp|P50453|SPB9_HUMAN	yes	yes	0	0	0	0	0			1						1	33.773	33.773	3	0.0064247	9329	20190902_JH_WT_Ubi_3	84.687	41.885	1448600	0	0	681390	0	0	0	0	0	767170			2164	906	1902	6154;6155	6478;6479	6479				2
HLGPSEKVQVTEAK	GlyGly (K)	1635.858	0.8580338	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN	yes	no	0	0	1	0	1	2	1		1	1	1	1		1	21.566	21.566	3;4	3.2764E-15	4466	20190902_JH_EV_Ubi_3	154.23	109.93	223520000	48045000	25455000	0	40527000	0	61686000	36633000	0	11171000			2165	186	1903	6156;6157;6158;6159;6160;6161;6162;6163	6480;6481;6482;6483;6484;6485;6486;6487	6483		163;164		7
HLGPSEKVQVTEAKADGALTQEEK	2 GlyGly (K)	2792.3941	0.39406475	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN	yes	no	0	0	2	0	2	1					1				28.26	28.26	4	0.00070726	6627	20190902_JH_MUT_Ubi_2	78.413	59.061	7246800	3822100	0	0	0	0	3424700	0	0	0			2166	186	1904	6164;6165	6488;6489	6489		163;164		2
HLGVCISVANNR	Unmodified	1338.6827	0.68265239	200	sp|O43390-4|HNRPR_HUMAN;sp|O43390-3|HNRPR_HUMAN;sp|O43390|HNRPR_HUMAN;sp|O43390-2|HNRPR_HUMAN	yes	no	0	0	0	0	0			1				1	1	1	27.838	27.838	3	0.0041247	5640	20190821_JH_WT_Ubi	92.611	0	35940000	0	0	9593100	0	0	0	5835500	9068600	11443000			2167	200	1905	6166;6167;6168;6169	6490;6491;6492;6493	6491				4
HLHEGAKSETAEELK	GlyGly (K)	1791.8751	0.87514042	154	sp|O14791-3|APOL1_HUMAN;sp|O14791|APOL1_HUMAN;sp|O14791-2|APOL1_HUMAN	yes	no	0	0	1	0	1			1		1					18.122	18.122	4	0.0026256	3284	20190821_JH_WT_Ubi	83.243	33.135	3665100	0	0	1275600	0	2389500	0	0	0	0			2168	154	1906	6170;6171	6494;6495	6495		126		2
HLHSIMVLK	Oxidation (M)	1092.6114	0.61138492	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	0	1	0	3	1	1	1	1	1	1	1	1	22.936	22.936	3	0.00051964	4623	20190902_JH_EV_Ubi_2	137.9	72.439	109600000	6455000	1564200	8668800	8748600	14287000	950220	4778700	29584000	34562000			2169	124	1907	6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182	6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507	6499			57	12
HLHSIMVLK	Unmodified	1076.6165	0.6164703	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	0	0	0	1				1		1		1	24.912	24.912	3	0.00041134	4975	20190821_JH_EV_Ubi	104.06	37.787	18369000	0	0	0	0	2218600	0	2148400	0	14002000			2170	124	1907	6183;6184;6185;6186	6508;6509;6510;6511	6508				4
HLHYWFVESQK	Unmodified	1472.7201	0.72008375	511	sp|P10619-2|PPGB_HUMAN;sp|P10619|PPGB_HUMAN	yes	no	0	0	0	0	0			1					1	1	30.76	30.76	3	0.0001124	6647	20190821_JH_WT_Ubi	140.17	84.856	56284000	0	0	25864000	0	0	0	0	14702000	15718000			2171	511	1908	6187;6188;6189	6512;6513;6514	6512				3
HLIIPENLKPTK	GlyGly (K)	1515.8773	0.87731267	1496	sp|Q6V1P9|PCD23_HUMAN	yes	yes	0	0	1	0	1			1							48.085	48.085	3	0.025453	13249	20190821_JH_WT_Ubi	65.695	19.815	4587800	0	0	4587800	0	0	0	0	0	0			2172	1496	1909	6190	6515	6515		1503		1
HLILVVNYSCPNHYEDYVHR	Unmodified	2527.2067	0.20666209	1520	sp|Q7L014|DDX46_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	34.855	34.855	4	9.5055E-06	8025	20190821_JH_WT_Ubi	107.13	84.226	33653000	0	2355500	15691000	0	0	2964800	1630500	4558300	6453400			2173	1520	1910	6191;6192;6193;6194;6195;6196	6516;6517;6518;6519;6520;6521;6522	6519				7
HLISSLQNHNHQLK	Unmodified	1667.8856	0.88558595	271	sp|O75150-3|BRE1B_HUMAN;sp|O75150-4|BRE1B_HUMAN;sp|Q5VTR2|BRE1A_HUMAN;sp|O75150|BRE1B_HUMAN	yes	no	0	0	0	0	0	1		1		1				1	20.942	20.942	3;4	0.0013113	3666	20190821_JH_EV_Ubi	92.943	58.193	9561500	2088200	0	3515100	0	475710	0	0	0	3482500			2174	271	1911	6197;6198;6199;6200	6523;6524;6525;6526	6523				4
HLLEGAKSESAEELK	GlyGly (K)	1753.8846	0.88464248	1860	sp|Q9BQE5|APOL2_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1		1	24.491	24.491	3	3.8053E-11	5466	20190902_JH_MUT_Ubi_2	153.32	102.23	35368000	3943400	2504400	0	4166800	4109600	9038100	4909200	0	6696100			2175	1860	1912	6201;6202;6203;6204;6205;6206;6207	6527;6528;6529;6530;6531;6532;6533	6531		1812		7
HLLIGLPSGAILSLPK	Unmodified	1628.0025	0.002513188	1623	sp|Q8N766-3|EMC1_HUMAN;sp|Q8N766-2|EMC1_HUMAN;sp|Q8N766|EMC1_HUMAN;sp|Q8N766-4|EMC1_HUMAN	yes	no	0	0	0	0	0			1							47.651	47.651	3	5.178E-06	13071	20190821_JH_WT_Ubi	121.42	100.99	8525200	0	0	8525200	0	0	0	0	0	0			2176	1623	1913	6208	6534	6534				1
HLLIGVSSDR	Unmodified	1095.6037	0.60365701	784	sp|P36542-2|ATPG_HUMAN;sp|P36542|ATPG_HUMAN	yes	no	0	0	0	0	0			1							27.842	27.842	3	0.036741	5647	20190821_JH_WT_Ubi	50.292	4.2909	0	0	0	0	0	0	0	0	0	0			2177	784	1914	6209	6535	6535				1
HLLPCVIHAAVLK	Unmodified	1469.8541	0.85407481	1319	sp|Q15042-4|RB3GP_HUMAN;sp|Q15042|RB3GP_HUMAN;sp|Q15042-3|RB3GP_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	33.99	33.99	3	1.7574E-08	9310	20190902_JH_WT_Ubi_3	153.1	120.81	50621000	0	1673800	21746000	0	0	2920600	2587400	12110000	9584200			2178	1319	1915	6210;6211;6212;6213;6214;6215	6536;6537;6538;6539;6540;6541	6541				6
HLLVHAPEDK	Unmodified	1157.6193	0.61930707	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN	yes	no	0	0	0	0	0		1		1	1				1	20.566	20.566	3	0.0030878	5113	20190902_JH_WT_Ubi_3	101.65	50.379	5089400	0	317560	0	0	478740	0	0	0	4293100			2179	946	1916	6216;6217;6218;6219	6542;6543;6544;6545	6545				4
HLNDDDVTGSVKSER	GlyGly (K)	1784.8289	0.82891851	283	sp|O75379-2|VAMP4_HUMAN;sp|O75379|VAMP4_HUMAN	yes	no	0	0	1	0	1						1				21.044	21.044	3	3.4153E-05	4684	20190902_JH_MUT_Ubi_2	121.13	81.496	956120	0	0	0	0	0	956120	0	0	0			2180	283	1917	6220	6546	6546		277		1
HLNDDVVKIDFEDVIAEPEGTHSFDGIWK	GlyGly (K)	3438.6368	0.63681422	1147;1148	sp|Q03135|CAV1_HUMAN;sp|Q03135-2|CAV1_HUMAN	no	no	0	0	1	0	1			1					1		47.398	47.398	4	4.5758E-07	12991	20190821_JH_WT_Ubi	88.186	62.827	5646800	0	0	3563600	0	0	0	0	2083200	0			2181	1147;1148	1918	6221;6222	6547;6548	6547		1144		1
HLNDETTSKQIK	GlyGly (K)	1526.7689	0.76888444	2035	sp|Q9NUQ9|FA49B_HUMAN;sp|Q9NUQ9-2|FA49B_HUMAN	yes	no	0	0	1	0	1	1									17.119	17.119	3	0.016474	2866	20190821_JH_EV_Ubi	73.466	41.307	1253200	1253200	0	0	0	0	0	0	0	0			2182	2035	1919	6223	6549	6549		1932		1
HLNEIDLFHCIDPNDSK	Unmodified	2065.9527	0.95273882	1335	sp|Q15185-3|TEBP_HUMAN;sp|Q15185-4|TEBP_HUMAN;sp|Q15185|TEBP_HUMAN	yes	no	0	0	0	0	0	1	1	1							38.915	38.915	3	1.7243E-05	9458	20190821_JH_WT_Ubi	112.91	80.663	15019000	2444200	1449700	11125000	0	0	0	0	0	0			2183	1335	1920	6224;6225;6226	6550;6551;6552	6552				3
HLNKMQNHGYENPTYK	Oxidation (M);GlyGly (K)	2102.9592	0.95922118	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	0	1	1	1	1	1	1		1	1	1	1		17.653	17.653	3;4	0.0012385	3189	20190821_JH_WT_Ubi	85.976	64.723	38306000	2709100	2671700	10494000	0	3716600	5216100	753050	12746000	0			2184	1168	1921	6227;6228;6229;6230;6231;6232;6233	6553;6554;6555;6556;6557;6558;6559	6558		1158;1159	727	7
HLNKMQNHGYENPTYK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2103.9432	0.94323676	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	1	1	1	1				1						18.828	18.828	3	0.034647	3922	20190902_JH_EV_Ubi_2	50.102	22.59	0	0	0	0	0	0	0	0	0	0			2185	1168	1921	6234	6560	6560	385	1158;1159	727	1
HLNLEYHSSMIADAVK	Oxidation (M)	1842.8934	0.89343302	223	sp|O43837|IDH3B_HUMAN;sp|O43837-2|IDH3B_HUMAN;sp|O43837-3|IDH3B_HUMAN	yes	no	0	0	0	1	0								1		29.524	29.524	3	0.031043	8189	20190902_JH_WT_Ubi_2	48.351	20.942	2610100	0	0	0	0	0	0	0	2610100	0			2186	223	1922	6235	6561	6561			92	1
HLNLSAAHHHSSEGLGR	Unmodified	1821.8983	0.8982759	1801	sp|Q96ME1-2|FXL18_HUMAN;sp|Q96ME1-4|FXL18_HUMAN;sp|Q96ME1|FXL18_HUMAN	yes	no	0	0	0	0	0						1				19.144	19.144	4	0.01151	4222	20190902_JH_MUT_Ubi_2	55.864	23.24	581760	0	0	0	0	0	581760	0	0	0			2187	1801	1923	6236	6562	6562				1
HLNYTEFTQFLQELQLEHAR	Unmodified	2516.2448	0.24482174	302	sp|O75746-2|CMC1_HUMAN;sp|O75746|CMC1_HUMAN	yes	no	0	0	0	0	0			1					1		48.543	48.543	3	8.7796E-14	14598	20190902_JH_WT_Ubi_2	140.32	114.33	8985400	0	0	2946100	0	0	0	0	6039300	0			2188	302	1924	6237;6238	6563;6564	6564				2
HLQDASGTDGKVAVNLAK	GlyGly (K)	1936.9967	0.99665254	2002	sp|Q9NPR9|GP108_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1		1	25.564	25.564	3	1.1249E-08	5496	20190902_JH_EV_Ubi_3	130.95	89.569	20508000	2102300	1471100	3195600	1441900	1696800	3031900	2516200	0	5052600			2189	2002	1925	6239;6240;6241;6242;6243;6244;6245;6246	6565;6566;6567;6568;6569;6570;6571;6572	6567		1916		7
HLQDINIATPVHNMLPGHQR	Oxidation (M)	2306.1702	0.17021701	167	sp|O15013-7|ARHGA_HUMAN;sp|O15013-4|ARHGA_HUMAN;sp|O15013-5|ARHGA_HUMAN;sp|O15013-6|ARHGA_HUMAN;sp|O15013|ARHGA_HUMAN	yes	no	0	0	0	1	0	1			1	1					28.876	28.876	4	0.0014837	6136	20190821_JH_EV_Ubi	71.685	29.347	13226000	5874000	0	0	4893000	2458900	0	0	0	0			2190	167	1926	6247;6248;6249	6573;6574;6575	6573			70	3
HLQDINIATPVHNMLPGHQR	Unmodified	2290.1753	0.17530238	167	sp|O15013-7|ARHGA_HUMAN;sp|O15013-4|ARHGA_HUMAN;sp|O15013-5|ARHGA_HUMAN;sp|O15013-6|ARHGA_HUMAN;sp|O15013|ARHGA_HUMAN	yes	no	0	0	0	0	0	1									33.149	33.149	4	0.0077048	7623	20190821_JH_EV_Ubi	55.437	22.189	2136100	2136100	0	0	0	0	0	0	0	0			2191	167	1926	6250	6576	6576				1
HLQLSFQEPHFYLR	Unmodified	1813.9264	0.92638813	1113	sp|P85037|FOXK1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	38.582	38.582	3	0.00013475	9442	20190821_JH_WT_Ubi	113.54	75.203	14266000	0	0	9848100	0	0	0	0	2721400	1696700			2192	1113	1927	6251;6252;6253	6577;6578;6579	6577				3
HLQTHSNTIVVSLQSK	Unmodified	1790.9639	0.96389585	1223	sp|Q13190-3|STX5_HUMAN;sp|Q13190-2|STX5_HUMAN;sp|Q13190-4|STX5_HUMAN;sp|Q13190|STX5_HUMAN	yes	no	0	0	0	0	0	1		1	1			1	1	1	25.75	25.75	3	8.0494E-14	5100	20190821_JH_WT_Ubi	153.41	91.379	26948000	3579900	0	7787400	2100600	0	0	1726000	5097700	6656800			2193	1223	1928	6254;6255;6256;6257;6258;6259	6580;6581;6582;6583;6584;6585	6583				6
HLQVIFGHLAASR	Unmodified	1447.8048	0.80481643	1738	sp|Q93008-1|USP9X_HUMAN;sp|Q93008|USP9X_HUMAN	yes	no	0	0	0	0	0		1	1					1		31.867	31.867	3	0.0025485	6644	20190821_JH_MUT_Ubi	93.348	59.348	20191000	0	932080	10615000	0	0	0	0	8644300	0			2194	1738	1929	6260;6261;6262	6586;6587;6588;6589	6586				4
HLQVNVTNPVQCSLHGK	Unmodified	1929.9843	0.98431372	317	sp|O94832|MYO1D_HUMAN	yes	yes	0	0	0	0	0	1	1		1	1	1	1			28.5	28.5	3	8.3322E-26	5486	20190821_JH_MUT_Ubi	176.42	139.42	15449000	3345900	1651900	0	2073700	3963200	2547400	1866800	0	0			2195	317	1930	6263;6264;6265;6266;6267;6268	6590;6591;6592;6593;6594;6595	6593				6
HLSGNQFILELFHGPTGSFK	Unmodified	2228.1378	0.13783747	1590	sp|Q8IYQ7|THNS1_HUMAN	yes	yes	0	0	0	0	0							1	1	1	45.173	45.173	3	9.856E-10	13706	20190902_JH_WT_Ubi_2	131.54	97.041	14918000	0	0	0	0	0	0	1382000	7640400	5895200			2196	1590	1931	6269;6270;6271	6596;6597;6598	6597				3
HLSKMQQNGYENPTYK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2067.932	0.93200337	420	sp|P05067-10|A4_HUMAN;sp|P05067-3|A4_HUMAN;sp|P05067-4|A4_HUMAN;sp|P05067-5|A4_HUMAN;sp|P05067-6|A4_HUMAN;sp|P05067-7|A4_HUMAN;sp|P05067-11|A4_HUMAN;sp|P05067-8|A4_HUMAN;sp|P05067-9|A4_HUMAN;sp|P05067|A4_HUMAN	yes	no	0	1	1	1	1	1	1		1			1	1	1	20.533	20.533	3	0.0010983	3533	20190821_JH_EV_Ubi	106.3	73.611	12511000	2911300	1468000	0	400240	0	0	385440	4075100	3271000			2197	420	1932	6272;6273;6274;6275;6276;6277	6599;6600;6601;6602;6603;6604;6605	6599	148;826	402	216	7
HLSKMQQNGYENPTYK	GlyGly (K);Deamidation (NQ)	2051.9371	0.93708875	420	sp|P05067-10|A4_HUMAN;sp|P05067-3|A4_HUMAN;sp|P05067-4|A4_HUMAN;sp|P05067-5|A4_HUMAN;sp|P05067-6|A4_HUMAN;sp|P05067-7|A4_HUMAN;sp|P05067-11|A4_HUMAN;sp|P05067-8|A4_HUMAN;sp|P05067-9|A4_HUMAN;sp|P05067|A4_HUMAN	yes	no	0	1	1	0	1								1		23.388	23.388	3	0.0080463	6079	20190902_JH_WT_Ubi_2	74.783	47.448	0	0	0	0	0	0	0	0	0	0			2198	420	1932	6278	6606	6606	148;826	402		1
HLSLALFQSFETGHCLNETNVTK	Deamidation (NQ)	2646.2748	0.27480124	669	sp|P23743-2|DGKA_HUMAN;sp|P23743-3|DGKA_HUMAN;sp|P23743|DGKA_HUMAN	yes	no	0	1	0	0	0			1							41.975	41.975	3	0.015634	10794	20190821_JH_WT_Ubi	54.058	23.963	2360400	0	0	2360400	0	0	0	0	0	0			2199	669	1933	6279	6607	6607	240			1
HLSLGSVQLCGVGK	Unmodified	1453.7711	0.77113304	775	sp|P35573-2|GDE_HUMAN;sp|P35573-3|GDE_HUMAN;sp|P35573|GDE_HUMAN	yes	no	0	0	0	0	0			1					1	1	34.076	34.076	2;3	0.0016146	9887	20190902_JH_WT_Ubi_2	114.24	71.903	4373500	0	0	781940	0	0	0	0	1836100	1755400			2200	775	1934	6280;6281;6282	6608;6609;6610	6609				1
HLSPDGQYVPR	Unmodified	1267.6309	0.63093439	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	0	0	0		1				1	1			24.734	24.734	3	0.0028938	5322	20190902_JH_MUT_Ubi_3	99.788	62.444	6884800	0	1570300	0	0	0	2356900	2957600	0	0			2201	367	1935	6283;6284;6285	6611;6612;6613	6613				3
HLSPYATLTVGDSSHK	Unmodified	1711.8529	0.85294842	1869	sp|Q9BSJ8|ESYT1_HUMAN;sp|Q9BSJ8-2|ESYT1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	2	1	27.364	27.364	2;3	1.7928E-25	6323	20190902_JH_MUT_Ubi_2	175.6	136.21	128550000	14619000	3636900	28494000	7416100	14838000	9586700	4949900	22739000	22269000			2202	1869	1936	6286;6287;6288;6289;6290;6291;6292;6293;6294;6295	6614;6615;6616;6617;6618;6619;6620;6621;6622;6623	6618				9
HLTHAQSTLDAK	Unmodified	1320.6786	0.67861287	1330	sp|Q15125|EBP_HUMAN	yes	yes	0	0	0	0	0				1						16.424	16.424	3	0.0010503	3450	20190902_JH_EV_Ubi_2	109.39	68.395	2520000	0	0	0	2520000	0	0	0	0	0			2203	1330	1937	6296	6624	6624				1
HLTLAQLPSVLTGSGLVNIGLQCQQLR	Unmodified	2915.6015	0.60149553	1801	sp|Q96ME1-2|FXL18_HUMAN;sp|Q96ME1-4|FXL18_HUMAN;sp|Q96ME1|FXL18_HUMAN	yes	no	0	0	0	0	0		1	1							52.745	52.745	3	6.9326E-21	13971	20190821_JH_MUT_Ubi	143.84	114.39	6706400	0	2234900	4471400	0	0	0	0	0	0			2204	1801	1938	6297;6298	6625;6626;6627	6626				3
HLTPVTLELGGK	Unmodified	1263.7187	0.71868677	843;738;922	sp|P30838|AL3A1_HUMAN;sp|P43353|AL3B1_HUMAN;sp|P43353-2|AL3B1_HUMAN;sp|P48448|AL3B2_HUMAN;sp|P51648|AL3A2_HUMAN;sp|P51648-2|AL3A2_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1		1			32.856	32.856	3	9.9889E-12	7074	20190821_JH_MUT_Ubi	160.91	32.311	20352000	1880900	2978000	7451900	1281000	1911300	0	4848700	0	0			2205	738;843;922	1939	6299;6300;6301;6302;6303;6304	6628;6629;6630;6631;6632;6633	6631				6
HLTPVTLELGGKNPCYVDDNCDPQTVANR	GlyGly (K)	3396.5827	0.58268693	843	sp|P43353|AL3B1_HUMAN;sp|P43353-2|AL3B1_HUMAN;sp|P48448|AL3B2_HUMAN	yes	no	0	0	1	0	1		1								36.513	36.513	4	0.0094192	8305	20190821_JH_MUT_Ubi	44.167	21.279	1043600	0	1043600	0	0	0	0	0	0	0			2206	843	1940	6305	6634	6634		818		1
HLTSMATSYFGK	Oxidation (M)	1357.6336	0.63363651	1776	sp|Q96ET8-3|TV23C_HUMAN;sp|Q9NYZ1|TV23B_HUMAN	yes	no	0	0	0	1	0								1		26.551	26.551	2	0.013977	7157	20190902_JH_WT_Ubi_2	81.972	48.709	0	0	0	0	0	0	0	0	0	0			2207	1776	1941	6306	6635	6635			1000	1
HLVGVCYTEDEAK	Unmodified	1519.6977	0.69769333	469	sp|P08574|CY1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	26.626	26.626	3	6.934E-06	7227	20190902_JH_WT_Ubi_2	134.98	98.452	27402000	0	0	5348700	0	0	0	0	11735000	10318000			2208	469	1942	6307;6308;6309	6636;6637;6638	6637				3
HLVLLDTAQAAAAGHR	Unmodified	1642.8903	0.89033698	138	sp|O00754-2|MA2B1_HUMAN;sp|O00754|MA2B1_HUMAN	yes	no	0	0	0	0	0			1					1		32.252	32.252	3	2.543E-05	9172	20190902_JH_WT_Ubi_2	114.31	81.118	3762800	0	0	0	0	0	0	0	3762800	0			2209	138	1943	6310;6311	6639;6640	6640				2
HLVMGDIPAAVNAFQEAASLLGK	Oxidation (M)	2367.2257	0.2256662	880	sp|P49321-2|NASP_HUMAN;sp|P49321|NASP_HUMAN;sp|P49321-3|NASP_HUMAN	yes	no	0	0	0	1	0	1	1			1	1				53.155	53.155	3	2.7383E-06	14123	20190821_JH_MUT_Ubi	95.361	69.444	8153300	4927400	1637300	0	0	805130	783440	0	0	0			2210	880	1944	6312;6313;6314;6315	6641;6642;6643;6644	6643			550	4
HLVYESDQNKDGK	GlyGly (K)	1645.7696	0.76961272	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-5|CALU_HUMAN;sp|O43852-9|CALU_HUMAN;sp|O43852-15|CALU_HUMAN	yes	no	0	0	1	0	1									1	17.329	17.329	3	0.021689	4203	20190902_JH_WT_Ubi_3	65.495	39.383	1391600	0	0	0	0	0	0	0	0	1391600			2211	225	1945	6316	6645	6645		202		1
HLYDIHVTVQPK	Unmodified	1448.7776	0.77759863	98	sp|A8MXV4|NUD19_HUMAN	yes	yes	0	0	0	0	0	1		1							29.679	29.679	3	0.00011819	6181	20190821_JH_WT_Ubi	129.34	94.119	10500000	1814900	0	8685300	0	0	0	0	0	0			2212	98	1946	6317;6318	6646;6647	6647				2
HLYTLDGGDIINALCFSPNR	Unmodified	2275.1056	0.10555106	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	2	2	48.534	48.534	2;3	1.551E-49	12754	20190902_JH_MUT_Ubi_3	204.07	160.51	74949000	0	7387300	28998000	0	0	4808600	4161000	13151000	16443000			2213	1085	1947	6319;6320;6321;6322;6323;6324;6325;6326	6648;6649;6650;6651;6652;6653;6654;6655;6656;6657	6652				10
HMAGLKVYNVDGPSNNATGQSR	Oxidation (M);GlyGly (K)	2445.1455	0.1455184	1663	sp|Q8TAA9-2|VANG1_HUMAN;sp|Q8TAA9|VANG1_HUMAN	yes	no	0	0	1	1	1				1	1					24.598	24.598	3;4	9.4625E-06	5271	20190902_JH_EV_Ubi_3	92.932	63.488	4503100	0	0	0	2963500	1539600	0	0	0	0			2214	1663	1948	6327;6328	6658;6659	6659		1661	959	2
HMGAVFLLSQEAGGDLR	Oxidation (M)	1815.8938	0.89376737	685	sp|P26006|ITA3_HUMAN;sp|P26006-1|ITA3_HUMAN	yes	no	0	0	0	1	0			1					1	1	37.487	37.487	3	2.8039E-10	8975	20190821_JH_WT_Ubi	141.06	90.052	31029000	0	0	15479000	0	0	0	0	8643300	6907000			2215	685	1949	6329;6330;6331	6660;6661;6662	6660			425	3
HMGGILAVANIR	Oxidation (M)	1266.6867	0.68667513	871	sp|P48147|PPCE_HUMAN	yes	yes	0	0	0	1	0			1			1	1	1	1	31.599	31.599	3	0.00057116	9032	20190902_JH_WT_Ubi_2	118.03	78.16	13746000	0	0	2311800	0	0	1287000	1414000	4829100	3904300			2216	871	1950	6332;6333;6334;6335;6336	6663;6664;6665;6666;6667	6666			548	5
HMGGILAVANIR	Unmodified	1250.6918	0.69176051	871	sp|P48147|PPCE_HUMAN	yes	yes	0	0	0	0	0			1							35.107	35.107	3	0.017051	8064	20190821_JH_WT_Ubi	66.92	33.691	1044000	0	0	1044000	0	0	0	0	0	0			2217	871	1950	6337	6668	6668				1
HMSKELQTLASMR	Oxidation (M);GlyGly (K)	1660.8025	0.80250953	32		yes	no	0	0	1	1	1				1						32.723	32.723	3	0.032372	7827	20190902_JH_EV_Ubi_2	62.088	10.08	55181000	0	0	0	55181000	0	0	0	0	0	+		2218	32	1951	6338	6669	6669			28	1
HMVFLGGAVLADIMK	2 Oxidation (M)	1632.8368	0.83676977	1016	sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN	yes	no	0	0	0	2	0			1			1	1		1	40.149	40.149	3	0.0018572	11552	20190902_JH_WT_Ubi_3	86.803	54.741	9203400	0	0	3937900	0	0	1025800	1203600	0	3036200			2219	1016	1952	6339;6340;6341;6342	6670;6671;6672;6673	6673			632;633	4
HMVFLGGAVLADIMK	Oxidation (M)	1616.8419	0.84185515	1016	sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN	yes	no	0	0	0	1	0			1					1		43.827	43.827	3	0.0016056	11514	20190821_JH_WT_Ubi	90.412	50.299	2166200	0	0	2166200	0	0	0	0	0	0			2220	1016	1952	6343;6344	6674;6675	6674			632;633	2
HMVFLGGAVLADIMK	Unmodified	1600.8469	0.84694052	1016	sp|P61160|ARP2_HUMAN;sp|P61160-2|ARP2_HUMAN	yes	no	0	0	0	0	0			1							49.054	49.054	3	1.096E-05	13632	20190821_JH_WT_Ubi	123.28	95.603	1691000	0	0	1691000	0	0	0	0	0	0			2221	1016	1952	6345	6676	6676				1
HNDDEQYAWESSAGGSFTVR	Unmodified	2254.9516	0.95155284	455;465	sp|P08238|HS90B_HUMAN;sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	no	no	0	0	0	0	0	1	1	1	1				1	1	36.412	36.412	3	3.063E-14	8524	20190821_JH_WT_Ubi	144.74	127.03	37153000	5329600	2276300	15030000	1199400	0	0	0	7412900	5904400			2222	465;455	1953	6346;6347;6348;6349;6350;6351	6677;6678;6679;6680;6681;6682	6680				6
HNIAYFPQIVSVAAR	Unmodified	1684.9049	0.90492441	1754	sp|Q96AB3-2|ISOC2_HUMAN;sp|Q96AB3|ISOC2_HUMAN;sp|Q96AB3-3|ISOC2_HUMAN	yes	no	0	0	0	0	0			1					1	2	40.519	40.519	2;3	3.9031E-21	10218	20190821_JH_WT_Ubi	177.21	99.536	65380000	0	0	29626000	0	0	0	0	18426000	17328000			2223	1754	1954	6352;6353;6354;6355	6683;6684;6685;6686	6683				3
HNIMDFAMPYFIQVMK	3 Oxidation (M)	2031.9257	0.92566113	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	3	0			1					1	1	41.584	41.584	3	1.1352E-07	11961	20190902_JH_WT_Ubi_3	123.76	72.547	14589000	0	0	3336000	0	0	0	0	4921800	6331100			2224	1123	1955	6356;6357;6358	6687;6688;6689;6690;6691	6691			695;696;697	5
HNIMDFAMPYFIQVMK	2 Oxidation (M)	2015.9307	0.93074651	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	2	0			1							45.322	45.322	3	0.0085916	12146	20190821_JH_WT_Ubi	65.956	15.868	1473100	0	0	1473100	0	0	0	0	0	0			2225	1123	1955	6359	6692	6692			695;696;697	1
HNIMDFAMPYFIQVMK	Unmodified	1983.9409	0.94091726	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1							54.214	54.214	3	0.00068637	15530	20190821_JH_WT_Ubi	93.716	62.202	2640500	0	0	2640500	0	0	0	0	0	0			2226	1123	1955	6360	6693	6693				1
HNINIGITNVDVKAIPADSPTDQEPK	GlyGly (K)	2899.4676	0.46756404	2249	sp|Q9Y5Y0-2|FLVC1_HUMAN;sp|Q9Y5Y0|FLVC1_HUMAN	yes	no	0	0	1	0	1				1	1					36.594	36.594	4	0.00070456	9054	20190902_JH_EV_Ubi_3	66.31	47.801	2582900	0	0	0	1868000	714910	0	0	0	0			2227	2249	1956	6361;6362	6694;6695	6695		2086		2
HNNLDLVIIR	Unmodified	1205.6881	0.68805534	223	sp|O43837|IDH3B_HUMAN;sp|O43837-2|IDH3B_HUMAN	yes	no	0	0	0	0	0			1						1	35.05	35.05	2	0.0092429	8082	20190821_JH_WT_Ubi	127.76	82.684	13673000	0	0	8069700	0	0	0	0	0	5603500			2228	223	1957	6363;6364	6696;6697	6696				0
HNNLYLVATSK	Unmodified	1258.667	0.66698555	1899	sp|Q9BXS5|AP1M1_HUMAN;sp|Q9BXS5-2|AP1M1_HUMAN	yes	no	0	0	0	0	0			1							26.861	26.861	2	0.00089456	5354	20190821_JH_WT_Ubi	149.33	99.914	9680400	0	0	9680400	0	0	0	0	0	0			2229	1899	1958	6365	6698	6698				0
HNQLPLVIEFTEQTAPK	Unmodified	1964.0367	0.036726442	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	42.627	42.627	3	1.5052E-25	12126	20190902_JH_MUT_Ubi_2	171.08	123.46	138270000	18710000	12390000	41996000	6259400	8808600	8465000	7628200	15710000	18301000			2230	444	1959	6366;6367;6368;6369;6370;6371;6372;6373;6374	6699;6700;6701;6702;6703;6704;6705;6706;6707;6708	6704				10
HNQLPLVIEFTEQTAPK	Deamidation (NQ)	1965.0207	0.020742027	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	1	0	0	0					1					43.37	43.37	3	0.026213	11032	20190902_JH_EV_Ubi_3	80.411	43.473	0	0	0	0	0	0	0	0	0	0			2231	444	1959	6375	6709	6709	832			1
HNSEKPPEPVKPEVK	GlyGly (K);Deamidation (NQ)	1828.9319	0.93192702	2124	sp|Q9UHD1-2|CHRD1_HUMAN;sp|Q9UHD1|CHRD1_HUMAN	yes	no	0	1	1	0	2		1								41.323	41.323	2	0.011368	9998	20190821_JH_MUT_Ubi	83	15.847	563600	0	563600	0	0	0	0	0	0	0			2232	2124	1960	6376	6710	6710	675	1994		1
HNVHVMNISTGK	Oxidation (M)	1351.6667	0.66666797	1934	sp|Q9H1Z4-2|WDR13_HUMAN;sp|Q9H1Z4|WDR13_HUMAN	yes	no	0	0	0	1	0	1				1			1		17.175	17.175	3	0.005198	2911	20190821_JH_EV_Ubi	92.112	47.283	5998600	714740	0	0	0	571480	0	0	4712400	0			2233	1934	1961	6377;6378;6379	6711;6712;6713	6711			1055	2
HNYECLVYVQLPFMEDLR	Oxidation (M)	2341.0871	0.087123808	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	0	1	0			1							47.652	47.652	3	0.00024264	13097	20190821_JH_WT_Ubi	94.882	64.392	5482200	0	0	5482200	0	0	0	0	0	0			2234	542	1962	6380	6714	6714			323	1
HPHDIIDDINSGAVECPAS	Unmodified	2045.9113	0.91126793	726	sp|P30050-2|RL12_HUMAN;sp|P30050|RL12_HUMAN	yes	no	0	0	0	0	0				1	1					36.816	36.816	3	0.019829	9126	20190902_JH_EV_Ubi_3	47.64	17.728	2057800	0	0	0	823740	1234000	0	0	0	0			2235	726	1963	6381;6382	6715;6716	6716				2
HPIGVLLNAITELQK	Unmodified	1644.9563	0.95629128	2218	sp|Q9Y316-2|MEMO1_HUMAN;sp|Q9Y316|MEMO1_HUMAN;sp|Q9Y316-3|MEMO1_HUMAN	yes	no	0	0	0	0	0	1	1			1	1	1			48.204	48.204	3	5.913E-21	12729	20190821_JH_MUT_Ubi	174.21	144.74	5368000	739600	2015200	0	0	429050	1014200	1170000	0	0			2236	2218	1964	6383;6384;6385;6386;6387	6717;6718;6719;6720;6721	6719				5
HPKGKMIPVLHNTDLEQK	3 GlyGly (K);2 Deamidation (NQ)	2428.2169	0.21689243	368	sp|O96001-2|PPR17_HUMAN;sp|O96001|PPR17_HUMAN	yes	no	0	2	3	0	2							1			34.071	34.071	3	0.036235	8409	20190902_JH_MUT_Ubi_3	46.319	15.552	0	0	0	0	0	0	0	0	0	0			2237	368	1965	6388	6722	6722	117			1
HPPAPAEPSSDLASK	Unmodified	1502.7365	0.73652168	2092	sp|Q9P2E9-3|RRBP1_HUMAN;sp|Q9P2E9-2|RRBP1_HUMAN;sp|Q9P2E9|RRBP1_HUMAN	yes	no	0	0	0	0	0									1	22.97	22.97	3	0.012719	5876	20190902_JH_WT_Ubi_3	62.035	4.861	3150600	0	0	0	0	0	0	0	0	3150600			2238	2092	1966	6389	6723	6723				1
HPPFSPPEPPLSSPASQHK	Unmodified	2036.0116	0.011574324	1463	sp|Q68CZ2-2|TENS3_HUMAN;sp|Q68CZ2|TENS3_HUMAN	yes	no	0	0	0	0	0				1				1	1	29.821	29.821	3	0.00062159	7973	20190902_JH_WT_Ubi_3	80.361	38.151	6792300	0	0	0	1347200	0	0	0	2101900	3343300			2239	1463	1967	6390;6391;6392	6724;6725;6726	6726				3
HPVLCQSLLPILVQHITGPVRPR	Unmodified	2629.5003	0.50026534	1861	sp|Q9BQG0|MBB1A_HUMAN;sp|Q9BQG0-2|MBB1A_HUMAN	yes	no	0	0	0	0	1			1					1	1	43.543	43.543	4	3.5973E-07	11507	20190821_JH_WT_Ubi	104.84	90.068	64012000	0	0	45562000	0	0	0	0	8479700	9970600			2240	1861	1968	6393;6394;6395	6727;6728;6729;6730	6727				4
HQAFEAELHANADR	Unmodified	1607.7441	0.74406667	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1	1	1	1	23.647	23.647	3	5.5609E-07	5213	20190902_JH_MUT_Ubi_2	135.04	107.49	26686000	2960400	2124600	5557500	0	2632600	3223500	0	7962900	2224200			2241	1262	1969	6396;6397;6398;6399;6400;6401;6402;6403	6731;6732;6733;6734;6735;6736;6737;6738	6734				8
HQAFEAELSANQSR	Unmodified	1586.7437	0.74373232	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0			1	1		1	1	1	1	26.006	26.006	3	1.3568E-05	5664	20190902_JH_EV_Ubi_2	129.17	67.794	13977000	0	0	3038500	799640	0	1587000	1316500	4046400	3189400			2242	1262	1970	6404;6405;6406;6407;6408;6409	6739;6740;6741;6742;6743;6744	6739				6
HQAFEAEVQANSGAIVK	Unmodified	1797.901	0.90096124	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1				30.406	30.406	3	7.9051E-08	6673	20190821_JH_EV_Ubi	126.07	40.531	10803000	3021800	2514900	0	1800600	2027000	1438900	0	0	0			2243	1262	1971	6410;6411;6412;6413;6414	6745;6746;6747;6748;6749	6745				5
HQAQIDHYLGLANK	Unmodified	1606.8216	0.82158871	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN;sp|Q9NQC3-4|RTN4_HUMAN;sp|Q9NQC3-3|RTN4_HUMAN;sp|Q9NQC3-6|RTN4_HUMAN	yes	no	0	0	0	0	0								1		28.555	28.555	2	0.0070029	7820	20190902_JH_WT_Ubi_2	88.803	53.651	1806900	0	0	0	0	0	0	0	1806900	0			2244	2005	1972	6415	6750	6750				0
HQDVFNQPTLNSFMGLGQAAWK	Oxidation (M)	2504.1907	0.19067768	592	sp|P16930|FAAA_HUMAN	yes	yes	0	0	0	1	0									1	43.601	43.601	3	0.00030811	12734	20190902_JH_WT_Ubi_3	77.959	43.271	1504800	0	0	0	0	0	0	0	0	1504800			2245	592	1973	6416	6751	6751			367	1
HQDVPSQDDSKPTQR	GlyGly (K)	1850.8507	0.85071659	2015	sp|Q9NRN7|ADPPT_HUMAN	yes	yes	0	0	1	0	1						1				17.464	17.464	3	0.00092532	3903	20190902_JH_MUT_Ubi_2	99.238	41.122	953670	0	0	0	0	0	953670	0	0	0			2246	2015	1974	6417	6752;6753	6752		1924		2
HQEGEIFDTEKEK	GlyGly (K)	1702.7798	0.77984305	1143	sp|Q02878|RL6_HUMAN	yes	yes	0	0	1	0	1	1						1	1	1	21.863	21.863	3	0.0052479	5696	20190902_JH_WT_Ubi_2	86.467	50.164	7147000	901700	0	0	0	0	0	890240	2722600	2632400			2247	1143	1975	6418;6419;6420;6421	6754;6755;6756;6757	6756		1139		4
HQGVMVGMGQK	2 Oxidation (M)	1202.5536	0.55361205	1000;1087;1094;1420	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN	no	no	0	0	0	2	0	2	1	4	1		2	4	1	3	13.139	13.139	2;3	7.644E-05	2238	20190821_JH_EV_Ubi	142.98	95.113	375290000	27046000	9465200	45959000	1194900	0	31780000	43362000	19490000	196990000			2248	1000;1087;1094;1420	1976	6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439	6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775	6759			619;620;871;872	17
HQGVMVGMGQK	Oxidation (M)	1186.5587	0.55869743	1000;1087;1094;1420	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN	no	no	0	0	0	1	0	1	1	2	1	1	2	2	2	2	17.712	17.712	3	0.00037092	4114	20190902_JH_WT_Ubi_2	131.52	84.787	238410000	1323500	3035500	35000000	2043700	2943900	15315000	11559000	97687000	69500000			2249	1000;1087;1094;1420	1976	6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453	6776;6777;6778;6779;6780;6781;6782;6783;6784;6785;6786;6787;6788;6789	6786			619;620;871;872	14
HQGVMVGMGQK	Unmodified	1170.5638	0.5637828	1000;1087;1094;1420	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN	no	no	0	0	0	0	0			1					1	1	21.493	21.493	3	0.00067365	5504	20190902_JH_WT_Ubi_2	119.22	93.75	52810000	0	0	16974000	0	0	0	0	20184000	15652000			2250	1000;1087;1094;1420	1976	6454;6455;6456	6790;6791;6792	6791				3
HQGVMVGMGQKDSYVGDEAQSK	2 Oxidation (M);GlyGly (K)	2496.1009	0.10093597	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	1	2	1		1	1	1		1	1		1	22.464	22.464	3;4	1.3108E-08	4727	20190902_JH_MUT_Ubi_3	111.57	76.398	16692000	0	481540	1861300	4598800	0	4974800	1226500	0	3549100			2251	1000;1087;1094	1977	6457;6458;6459;6460;6461;6462	6793;6794;6795;6796;6797;6798	6796		980;984	619;620	6
HQGVMVGMGQKDSYVGDEAQSK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2497.085	0.084951556	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	1	1	2	1							1			22.563	22.563	3	0.029067	4837	20190902_JH_MUT_Ubi_3	45.659	27.279	0	0	0	0	0	0	0	0	0	0			2252	1000;1087;1094	1977	6463	6799	6799	957	980;984	619;620	1
HQGVMVGMGQKDSYVGDEAQSK	Oxidation (M);GlyGly (K)	2480.106	0.10602135	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	1	1	1			1					1		24.102	24.102	4	0.0071857	6389	20190902_JH_WT_Ubi_2	54.74	21.492	5555400	0	0	2320900	0	0	0	0	3234600	0			2253	1000;1087;1094	1977	6464;6465	6800;6801	6801		980;984	619;620	2
HQGVMVGMGQKDSYVGDEAQSKR	2 Oxidation (M);2 GlyGly (K)	2766.245	0.24497445	1000;1087;1094	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	no	no	0	0	2	2	2									1	21.43	21.43	4	0.0019934	5446	20190902_JH_WT_Ubi_3	61.304	33.228	1964100	0	0	0	0	0	0	0	0	1964100			2254	1000;1087;1094	1978	6466	6802	6802		980;984	619;620	1
HQILEQAVEDYAETVHQLSK	Unmodified	2337.1601	0.16008906	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0		1	1	1		1				43.039	43.039	3	1.4369E-05	12268	20190902_JH_MUT_Ubi_2	105.96	65.103	6313500	0	935150	3644300	650730	0	1083300	0	0	0			2255	1129;1130	1979	6467;6468;6469;6470	6803;6804;6805;6806	6805				3
HQKTPEIYSVELSGTKDIVK	Acetyl (Protein N-term);2 GlyGly (K)	2541.3075	0.30748157	961	sp|P54707|AT12A_HUMAN;sp|P54707-2|AT12A_HUMAN	yes	no	1	0	2	0	2				1						53.872	53.872	3	0.015301	12619	20190902_JH_EV_Ubi_2	48.623	24.323	1636400	0	0	0	1636400	0	0	0	0	0			2256	961	1980	6471	6807	6807		926;927		1
HQLASISSPVVTSLLINLGSPVK	Unmodified	2359.3475	0.3474959	1957	sp|Q9H583|HEAT1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1		1	50.884	50.884	3	6.1681E-05	14346	20190821_JH_WT_Ubi	84.573	56.1	23680000	0	4625100	11661000	0	0	1702300	2000500	0	3691700			2257	1957	1981	6472;6473;6474;6475;6476	6808;6809;6810;6811;6812	6811				5
HQLLEADISAHEDR	Unmodified	1632.7856	0.78559713	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0		1	1							26.581	26.581	3	0.0010841	5251	20190821_JH_WT_Ubi	98.676	60.31	5404200	0	1797200	3607100	0	0	0	0	0	0			2258	1262	1982	6477;6478	6813;6814;6815	6814				3
HQQQQESSINITNIQLDCGGIQISFHK	3 Deamidation (NQ)	3125.4724	0.47239143	1862	sp|Q9BQP9|BPIA3_HUMAN	yes	yes	0	3	0	0	0	1									40.137	40.137	3	0.017844	10231	20190821_JH_EV_Ubi	48.984	10.11	0	0	0	0	0	0	0	0	0	0			2259	1862	1983	6479	6816	6816	1215;1216;1217;1218			1
HQSFVLVGETGSGK	Unmodified	1444.731	0.73104237	191	sp|O43143|DHX15_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1	1	1		1	28.106	28.106	3	0.0037811	6314	20190902_JH_EV_Ubi_2	81.703	47.735	18519000	1713900	0	5561500	1089500	1117500	1669400	989620	0	6378000			2260	191	1984	6480;6481;6482;6483;6484;6485;6486	6817;6818;6819;6820;6821;6822;6823;6824	6819				8
HQTLQGVAFPISR	Unmodified	1452.7837	0.78374664	1195	sp|Q12792-3|TWF1_HUMAN;sp|Q12792|TWF1_HUMAN;sp|Q12792-4|TWF1_HUMAN	yes	no	0	0	0	0	0		1	1	1	1	1	1	1	1	33.569	33.569	3	0.013469	8608	20190902_JH_MUT_Ubi_2	67.964	39.637	27095000	0	1360300	5275900	1032300	1438800	2834100	1786000	6564500	6803400			2261	1195	1985	6487;6488;6489;6490;6491;6492;6493;6494	6825;6826;6827;6828;6829;6830;6831;6832	6828				8
HQTLVLTLPTVAFLEDK	Unmodified	1924.067	0.066963938	1908	sp|Q9BYD3|RM04_HUMAN	yes	yes	0	0	0	0	0	1	1	1						1	49.272	49.272	3	3.42E-14	13706	20190821_JH_WT_Ubi	154.47	86.298	7046300	1072500	1270300	3760400	0	0	0	0	0	943090			2262	1908	1986	6495;6496;6497;6498	6833;6834;6835;6836;6837	6835				5
HRPELIEYDK	Unmodified	1298.6619	0.66190017	214	sp|O43707|ACTN4_HUMAN	yes	yes	0	0	0	0	1						1				22.63	22.63	3	0.036365	5027	20190902_JH_MUT_Ubi_2	65.695	26.673	0	0	0	0	0	0	0	0	0	0			2263	214	1987	6499	6838	6838				1
HRPQVAIICGSGLGGLTDK	Unmodified	1978.0418	0.041828595	379	sp|P00491|PNPH_HUMAN	yes	yes	0	0	0	0	1	1	1	1	1	1	1	1	1	1	32.657	32.657	3;4	6.2844E-120	8887	20190902_JH_WT_Ubi_3	260.25	185.23	102400000	4543200	6239200	20072000	7393000	6885600	13773000	12066000	17639000	13785000			2264	379	1988	6500;6501;6502;6503;6504;6505;6506;6507;6508	6839;6840;6841;6842;6843;6844;6845;6846;6847	6847				9
HRVDFLQLMIDSQNSK	Oxidation (M);2 Deamidation (NQ)	1947.936	0.93602612	475	sp|P08684|CP3A4_HUMAN;sp|P24462|CP3A7_HUMAN;sp|P24462-2|CP3A7_HUMAN	yes	no	0	2	0	1	1			1							44.661	44.661	2	0.0064702	11900	20190821_JH_WT_Ubi	73.9	7.368	0	0	0	0	0	0	0	0	0	0			2265	475	1989	6509	6848	6848	179;839;840		279	1
HSAGGGNVQIVTK	Unmodified	1266.668	0.66804818	518	sp|P11137-4|MTAP2_HUMAN	yes	yes	0	0	0	0	0	1				1					19.037	19.037	3	0.0012869	3331	20190821_JH_EV_Ubi	102.73	45.712	3565800	0	0	0	0	3565800	0	0	0	0			2266	518	1990	6510;6511	6849;6850	6849				2
HSDSKEDDGQEIA	GlyGly (K)	1543.6387	0.63865813	1457	sp|Q5ZPR3-2|CD276_HUMAN;sp|Q5ZPR3|CD276_HUMAN	yes	no	0	0	1	0	1	1									18.234	18.234	3	0.018208	3059	20190821_JH_EV_Ubi	68.676	24.906	5090000	5090000	0	0	0	0	0	0	0	0			2267	1457	1991	6512	6851	6851		1471		1
HSEDVNVKVSNAQSVTSER	GlyGly (K)	2199.0516	0.051601238	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	2	1	23.754	23.754	3;4	3.3957E-23	3905	20190821_JH_MUT_Ubi	159.5	116.68	281520000	37142000	21970000	22366000	34218000	34804000	27927000	16192000	34213000	52686000			2268	255	1992	6513;6514;6515;6516;6517;6518;6519;6520;6521;6522	6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862	6855		231		11
HSEDVNVKVSNAQSVTSER	GlyGly (K);Deamidation (NQ)	2200.0356	0.035616823	255	sp|O60669|MOT2_HUMAN	yes	yes	0	1	1	0	1				1						24.67	24.67	3	0.017835	5272	20190902_JH_EV_Ubi_2	61.684	33.401	0	0	0	0	0	0	0	0	0	0			2269	255	1992	6523	6863	6863	82	231		1
HSLPDLPYDYGALEPHINAQIMQLHHSK	Oxidation (M)	3239.5822	0.58221665	405	sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-2|SODM_HUMAN	yes	no	0	0	0	1	0	1		1	1				1	1	38.733	38.733	4;5	0.0096557	11434	20190902_JH_WT_Ubi_2	43.293	19.899	138600000	3513300	0	58192000	2935700	0	0	0	28160000	45795000			2270	405	1993	6524;6525;6526;6527;6528	6864;6865;6866;6867;6868	6867			196	5
HSLPDLPYDYGALEPHINAQIMQLHHSK	Unmodified	3223.5873	0.58730202	405	sp|P04179-3|SODM_HUMAN;sp|P04179|SODM_HUMAN;sp|P04179-2|SODM_HUMAN	yes	no	0	0	0	0	0			1						1	40.328	40.328	5	0.0058518	10169	20190821_JH_WT_Ubi	47.7	28.162	75203000	0	0	63388000	0	0	0	0	0	11815000			2271	405	1993	6529;6530	6869;6870	6869				2
HSMNPFCEIAVEEAVR	Oxidation (M)	1903.8557	0.85566731	798	sp|P38117|ETFB_HUMAN;sp|P38117-2|ETFB_HUMAN	yes	no	0	0	0	1	0								1	1	37.643	37.643	3	0.0019865	11124	20190902_JH_WT_Ubi_2	83.418	50.794	3784900	0	0	0	0	0	0	0	2128100	1656800			2272	798	1994	6531;6532	6871;6872	6871			510	2
HSMTNLPAYPVPQHPPHR	Oxidation (M)	2094.0218	0.021761855	1552	sp|Q86UW9-2|DTX2_HUMAN;sp|Q86UW9|DTX2_HUMAN	yes	no	0	0	0	1	0				1						24.639	24.639	4	0.027859	5267	20190902_JH_EV_Ubi_2	43.454	15.471	1470700	0	0	0	1470700	0	0	0	0	0			2273	1552	1995	6533	6873	6873			922	1
HSQAVEELAEQLEQTK	Unmodified	1838.901	0.90102082	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	37.123	37.123	3	3.2938E-19	8821	20190821_JH_WT_Ubi	165.89	95	25374000	2796600	0	9975500	0	0	0	0	0	12602000			2274	776	1996	6534;6535;6536;6537	6874;6875;6876;6877	6875				4
HSQDLAFLSMLNDIAAVPATAMPFR	2 Oxidation (M)	2747.3411	0.34110666	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	2	0		1				1	1			51.338	51.338	3	1.0899E-06	14560	20190902_JH_MUT_Ubi_2	91.733	56.031	9370500	0	3772500	0	0	0	2587000	3011100	0	0			2275	881	1997	6538;6539;6540	6878;6879;6880	6879			552;553	3
HSQDLAFLSMLNDIAAVPATAMPFR	Oxidation (M)	2731.3462	0.34619204	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	1	0		1								53.786	53.786	3	0.0084344	14288	20190821_JH_MUT_Ubi	62.082	22.838	0	0	0	0	0	0	0	0	0	0			2276	881	1997	6541	6881	6881			552;553	1
HSQFIGYPITLFVEK	Unmodified	1777.9403	0.94030686	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q58FG0|HS905_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	45.958	45.958	3	3.3741E-05	13935	20190902_JH_WT_Ubi_2	119.65	80.862	230500000	0	0	77495000	0	0	30088000	31983000	40461000	50473000			2277	455	1998	6542;6543;6544;6545;6546	6882;6883;6884;6885;6886;6887	6885				6
HSQFLGYPITLYLEK	Unmodified	1807.9509	0.95087155	1422	sp|Q58FF8|H90B2_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	44.461	44.461	3	9.6714E-09	11874	20190821_JH_WT_Ubi	146.27	0	123900000	0	8770900	63205000	0	0	7604300	2441900	28655000	13225000			2278	1422	1999	6547;6548;6549;6550;6551;6552	6888;6889;6890;6891;6892;6893	6891				6
HSSLITPLQAVAQR	Unmodified	1519.8471	0.84707518	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	0	0	0	0			1							34.727	34.727	3	0.0022541	7904	20190821_JH_WT_Ubi	86.699	48.76	5454000	0	0	5454000	0	0	0	0	0	0			2279	1107	2000	6553	6894	6894				1
HSSYTCICGSGENSAVLHYGHAGAPNDR	Unmodified	3016.294	0.2940499	540	sp|P12955-3|PEPD_HUMAN;sp|P12955-2|PEPD_HUMAN;sp|P12955|PEPD_HUMAN	yes	no	0	0	0	0	0			1					1		27.245	27.245	4	1.189E-05	7410	20190902_JH_WT_Ubi_2	84.125	66.33	8401800	0	0	5041300	0	0	0	0	3360500	0			2280	540	2001	6554;6555	6895;6896	6896				2
HSTSAVDLSTCFAQISHTAR	Unmodified	2188.0331	0.033114402	1513	sp|Q70J99|UN13D_HUMAN;sp|Q70J99-3|UN13D_HUMAN	yes	no	0	0	0	0	0						1		1	1	35.075	35.075	3	0.0091255	9229	20190902_JH_MUT_Ubi_2	55.707	28.063	9941700	0	0	0	0	0	1646400	0	3979600	4315700			2281	1513	2002	6556;6557;6558	6897;6898;6899	6897				2
HSVLGAAVSVGVPQGVSLK	Unmodified	1804.0207	0.020682448	2043	sp|Q9NVH1-3|DJC11_HUMAN;sp|Q9NVH1-2|DJC11_HUMAN;sp|Q9NVH1|DJC11_HUMAN	yes	no	0	0	0	0	0	1			1	1					38.421	38.421	3	0.0058732	9685	20190821_JH_EV_Ubi	61.477	25.456	6831500	4312800	0	0	1112700	1406100	0	0	0	0			2282	2043	2003	6559;6560;6561	6900;6901;6902	6900				3
HTAAVPGPGGIWSVFHAGVIGR	Unmodified	2185.1545	0.15449059	1483	sp|Q6P9B9|INT5_HUMAN	yes	yes	0	0	0	0	0			1							43.232	43.232	3	0.0087116	11310	20190821_JH_WT_Ubi	52.318	26.81	1633700	0	0	1633700	0	0	0	0	0	0			2283	1483	2004	6562	6903	6903				1
HTAMVSWGGVSIPNSPFR	Oxidation (M)	1957.9469	0.94686558	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	40.82	40.82	3	4.2776E-20	11699	20190902_JH_WT_Ubi_3	163.34	59.577	548660000	9235800	27947000	239980000	5524800	2961300	47602000	29057000	88946000	97405000			2284	637	2005	6563;6564;6565;6566;6567;6568;6569;6570;6571	6904;6905;6906;6907;6908;6909;6910;6911;6912;6913	6913			389	10
HTAMVSWGGVSIPNSPFR	Unmodified	1941.952	0.95195096	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	42.892	42.892	3	4.1754E-05	11191	20190821_JH_WT_Ubi	107.13	19.765	200970000	0	21954000	98397000	0	0	17143000	12187000	21738000	29557000			2285	637	2005	6572;6573;6574;6575;6576;6577	6914;6915;6916;6917;6918;6919	6917				6
HTEAAPGDSGLISCSLQEQR	Unmodified	2154.9964	0.99639455	1885	sp|Q9BW04|SARG_HUMAN;sp|Q9BW04-2|SARG_HUMAN	yes	no	0	0	0	0	0	1									31.556	31.556	3	0.00045023	7041	20190821_JH_EV_Ubi	79.676	42.682	887010	887010	0	0	0	0	0	0	0	0			2286	1885	2006	6578	6920	6920				1
HTFSGVASVESSSGEAFHVGK	Unmodified	2118.997	0.99704647	9	CON__P12763	yes	yes	0	0	0	0	0	1	1	1	1		1	1			31.064	31.064	3	2.0893E-45	6983	20190821_JH_EV_Ubi	185.59	98.852	26330000	4262800	4519200	4313300	2423000	0	8701700	2110100	0	0		+	2287	9	2007	6579;6580;6581;6582;6583;6584	6921;6922;6923;6924;6925;6926	6921				6
HTGCCGDNDPIDVCEIGSK	Unmodified	2132.8561	0.85613759	1334	sp|Q15181|IPYR_HUMAN	yes	yes	0	0	0	0	0			1					1	1	30.642	30.642	3	0.00014732	8640	20190902_JH_WT_Ubi_2	92.31	80.935	12927000	0	0	4474300	0	0	0	0	3748900	4703600			2288	1334	2008	6585;6586;6587	6927;6928;6929	6928				3
HTGPGILSMANAGPNTNGSQFFICTAK	Oxidation (M)	2806.3167	0.31668283	1072	sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN	yes	no	0	0	0	1	0			1		1	1				38.778	38.778	3	0.0086897	9598	20190902_JH_EV_Ubi_3	58.332	29.174	5974800	0	0	4404100	0	0	1570700	0	0	0			2289	1072	2009	6588;6589;6590	6930;6931;6932	6930			656	3
HTGPGILSMANAGPNTNGSQFFICTAK	Oxidation (M);Deamidation (NQ)	2807.3007	0.30069841	1072	sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN	yes	no	0	1	0	1	0		1	1			1	1	1	1	40.019	40.019	3	3.6418E-53	9959	20190821_JH_WT_Ubi	186.54	145.73	190100000	0	3938300	33211000	0	0	4991800	3472000	117910000	26575000			2290	1072	2009	6591;6592;6593;6594;6595;6596	6933;6934;6935;6936;6937;6938;6939;6940	6937	344;345;346;966		656	8
HTGPGILSMANAGPNTNGSQFFICTAK	Deamidation (NQ)	2791.3058	0.30578379	1072	sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN	yes	no	0	1	0	0	0			1			1	1	1	1	43.441	43.441	3	1.8273E-76	12580	20190902_JH_WT_Ubi_3	213.81	162.38	45383000	0	0	21834000	0	0	2621900	2871800	9914100	8141200			2291	1072	2009	6597;6598;6599;6600;6601	6941;6942;6943;6944;6945	6945	344;345;346;966			5
HTGPGILSMANAGPNTNGSQFFICTAK	Oxidation (M);2 Deamidation (NQ)	2808.2847	0.284714	1072	sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN	yes	no	0	2	0	1	0							1	1	1	41.454	41.454	3	1.6604E-26	12430	20190902_JH_WT_Ubi_2	148.72	120.52	14686000	0	0	0	0	0	0	1390600	7217900	6077700			2292	1072	2009	6602;6603;6604	6946;6947;6948;6949	6948	344;345;346;966		656	4
HTGPNSPDTANDGFVR	Unmodified	1683.7601	0.76011066	748	sp|P31943|HNRH1_HUMAN;sp|P55795|HNRH2_HUMAN	yes	no	0	0	0	0	0			1	1	1	1		1	1	24.071	24.071	3	7.8615E-42	6179	20190902_JH_WT_Ubi_3	199.33	166.02	35445000	0	0	6251200	1527200	2417300	1604400	0	15685000	7960000			2293	748	2010	6605;6606;6607;6608;6609;6610	6950;6951;6952;6953;6954;6955	6955				6
HTGYVIELQHVVK	Unmodified	1521.8304	0.83036248	866	sp|P47897-2|SYQ_HUMAN;sp|P47897|SYQ_HUMAN	yes	no	0	0	0	0	0		1	1							30.369	30.369	3	0.0016363	6389	20190821_JH_WT_Ubi	99.732	69.396	8915700	0	1711900	7203800	0	0	0	0	0	0			2294	866	2011	6611;6612	6956;6957	6957				2
HTIAVVWGGVNIPHSPYR	Unmodified	2002.0537	0.053713911	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	37.13	37.13	3;4	6.4606E-15	10937	20190902_JH_WT_Ubi_2	152.68	99.679	235100000	0	9577400	105770000	0	0	11603000	17077000	46844000	44231000			2295	282	2012	6613;6614;6615;6616;6617;6618	6958;6959;6960;6961;6962;6963	6962				6
HTTEAAAGALQNITAGDR	Unmodified	1795.8813	0.88128843	2228	sp|Q9Y446|PKP3_HUMAN;sp|Q9Y446-2|PKP3_HUMAN	yes	no	0	0	0	0	0								1		29.998	29.998	3	0.012647	8345	20190902_JH_WT_Ubi_2	54.768	24.225	1326800	0	0	0	0	0	0	0	1326800	0			2296	2228	2013	6619	6964	6964				1
HTVTMIPGDGIGPELMLHVK	2 Oxidation (M)	2176.102	0.10204559	918	sp|P51553-2|IDH3G_HUMAN;sp|P51553|IDH3G_HUMAN	yes	no	0	0	0	2	0								1		36.223	36.223	3	0.011952	10558	20190902_JH_WT_Ubi_2	53.773	17.647	1974100	0	0	0	0	0	0	0	1974100	0			2297	918	2014	6620	6965	6965			578;579	1
HTVVHLACICHSFHYIK	Unmodified	2121.0401	0.040054456	2067	sp|Q9NZ01|TECR_HUMAN	yes	yes	0	0	0	0	0			1							30.202	30.202	5	0.010145	6360	20190821_JH_WT_Ubi	59.864	32.368	6031800	0	0	6031800	0	0	0	0	0	0			2298	2067	2015	6621	6966	6966				1
HTYLANGQTKVLTQK	GlyGly (K);Deamidation (NQ)	1815.9479	0.94791144	1945	sp|Q9H3M7-2|TXNIP_HUMAN;sp|Q9H3M7|TXNIP_HUMAN	yes	no	0	1	1	0	1								1		25.334	25.334	3	0.034774	6754	20190902_JH_WT_Ubi_2	94.45	58.343	3708500	0	0	0	0	0	0	0	3708500	0			2299	1945	2016	6622	6967	6967	620			1
HVFEQASNHPFLVGLHSCFQTESR	Unmodified	2826.3296	0.32963077	824	sp|P41743|KPCI_HUMAN	yes	yes	0	0	0	0	0			1							35.091	35.091	4	0.002619	8039	20190821_JH_WT_Ubi	58.796	31.388	5954600	0	0	5954600	0	0	0	0	0	0			2300	824	2017	6623	6968	6968				1
HVFGESDELIGQK	Unmodified	1457.7151	0.71505795	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	30.677	30.677	3	1.9877E-71	6566	20190821_JH_WT_Ubi	233.13	168.31	170190000	4778100	1750300	39109000	7343300	6088800	3343800	2929200	57070000	47775000			2301	997	2018	6624;6625;6626;6627;6628;6629;6630;6631;6632	6969;6970;6971;6972;6973;6974;6975;6976;6977;6978	6976				10
HVFLTGPPGVGK	Unmodified	1207.6713	0.67134264	1868	sp|Q9BSD7|NTPCR_HUMAN	yes	yes	0	0	0	0	0	2		1		1	1				30.204	30.204	2;3	0.0084445	6615	20190821_JH_EV_Ubi	79.659	62.633	5678100	2479500	0	1547100	0	1038100	613490	0	0	0			2302	1868	2019	6633;6634;6635;6636;6637	6979;6980;6981;6982;6983	6979				4
HVFWGSGSHTLPALLENLK	Unmodified	2105.1058	0.10580906	393	sp|P02786|TFR1_HUMAN	yes	yes	0	0	0	0	0		1	1			1		1	1	43.2	43.2	3;4	0.00080342	12205	20190902_JH_MUT_Ubi_2	77.324	50.543	83339000	0	1989500	48220000	0	0	2063500	0	14917000	16149000			2303	393	2020	6638;6639;6640;6641;6642	6984;6985;6986;6987;6988	6985				5
HVGMAVAGLLADAR	Oxidation (M)	1395.7293	0.72926823	683	sp|P25788-2|PSA3_HUMAN;sp|P25788|PSA3_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1	1	33.57	33.57	3	0.0010626	7565	20190821_JH_WT_Ubi	101.53	61.036	12239000	0	856270	2860700	0	0	1983000	1074600	2159600	3304900			2304	683	2021	6643;6644;6645;6646;6647;6648	6989;6990;6991;6992;6993;6994	6992			422	6
HVGMAVAGLLADAR	Unmodified	1379.7344	0.73435361	683	sp|P25788-2|PSA3_HUMAN;sp|P25788|PSA3_HUMAN	yes	no	0	0	0	0	0			1							37.468	37.468	3	0.00034448	8960	20190821_JH_WT_Ubi	108.68	69.725	2844100	0	0	2844100	0	0	0	0	0	0			2305	683	2021	6649	6995	6995				1
HVGNQQYNVTYVVK	Unmodified	1647.8369	0.83690442	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0		1	1	1		1	1	1	1	27.741	27.741	3	1.5462E-07	5668	20190821_JH_WT_Ubi	141.58	89.97	117390000	0	5226900	25240000	2030000	0	6584900	9120600	29999000	39192000			2306	282	2022	6650;6651;6652;6653;6654;6655;6656	6996;6997;6998;6999;7000;7001;7002	7000				7
HVGPGVLSMANAGPNTNGSQFFICTIK	Oxidation (M);Deamidation (NQ)	2833.3527	0.35273398	732	sp|P30405|PPIF_HUMAN	yes	yes	0	1	0	1	0			1					1		43.511	43.511	3	0.0013604	13040	20190902_JH_WT_Ubi_2	66.372	35.058	7015100	0	0	3435700	0	0	0	0	3579500	0			2307	732	2023	6657;6658	7003;7004;7005	7004	259;260;886		456	3
HVHVHVLPR	Unmodified	1092.6305	0.63048088	894	sp|P49789|FHIT_HUMAN	yes	yes	0	0	0	0	0								1	1	19.629	19.629	3	0.011543	4874	20190902_JH_WT_Ubi_2	82.241	52.767	3493700	0	0	0	0	0	0	0	1639900	1853800			2308	894	2024	6659;6660	7006;7007	7006				2
HVINFDLPSDIEEYVHR	Unmodified	2082.0171	0.017053633	134	sp|O00571|DDX3X_HUMAN;sp|O00571-2|DDX3X_HUMAN;sp|O15523-2|DDX3Y_HUMAN;sp|O15523|DDX3Y_HUMAN	yes	no	0	0	0	0	0	1		1	1				1		44.059	44.059	3	1.7816E-05	13254	20190902_JH_WT_Ubi_2	112.57	83.945	5568400	709360	0	3028800	321180	0	0	0	1509100	0			2309	134	2025	6661;6662;6663;6664	7008;7009;7010;7011	7011				4
HVINMCLNVIK	Oxidation (M)	1355.7054	0.70536166	1212	sp|Q13098-5|CSN1_HUMAN;sp|Q13098|CSN1_HUMAN;sp|Q13098-7|CSN1_HUMAN;sp|Q13098-6|CSN1_HUMAN	yes	no	0	0	0	1	0			1					1	1	28.639	28.639	2	0.017047	7439	20190902_JH_WT_Ubi_3	71.501	40.931	6237200	0	0	1162400	0	0	0	0	2801200	2273600			2310	1212	2026	6665;6666;6667	7012;7013;7014	7014			766	0
HVLHVQLNRPNK	Unmodified	1453.8266	0.82661451	1208	sp|Q13011|ECH1_HUMAN	yes	yes	0	0	0	0	1		1	1				1	1	1	20.044	20.044	4	0.00015653	4983	20190902_JH_WT_Ubi_2	129.85	79.065	452910000	0	11106000	86195000	0	0	0	10556000	204020000	141030000			2311	1208	2027	6668;6669;6670;6671;6672	7015;7016;7017;7018;7019;7020	7019				6
HVLHVQLNRPNK	Deamidation (NQ)	1454.8106	0.81063009	1208	sp|Q13011|ECH1_HUMAN	yes	yes	0	1	0	0	1			1					1		21.499	21.499	4	0.02786	5421	20190902_JH_WT_Ubi_2	58.699	16.616	9054700	0	0	1296600	0	0	0	0	7758000	0			2312	1208	2027	6673;6674	7021;7022	7022	395;396			1
HVLVILTDMSSYAEALR	Oxidation (M)	1932.9979	0.9978981	569	sp|P21281|VATB2_HUMAN;sp|P15313|VATB1_HUMAN	yes	no	0	0	0	1	0	1		1					1	1	41.522	41.522	3	2.8039E-10	11886	20190902_JH_WT_Ubi_3	141.06	109.67	10241000	1051500	0	3104100	0	0	0	0	2711200	3374400			2313	569	2028	6675;6676;6677;6678	7023;7024;7025;7026	7026			358	4
HVLVILTDMSSYAEALR	Unmodified	1917.003	0.002983473	569	sp|P21281|VATB2_HUMAN;sp|P15313|VATB1_HUMAN	yes	no	0	0	0	0	0			1							49.253	49.253	3	0.0042432	13722	20190821_JH_WT_Ubi	70.134	38.307	1531800	0	0	1531800	0	0	0	0	0	0			2314	569	2028	6679	7027	7027				1
HVNKDLGNMEENK	Oxidation (M);GlyGly (K)	1656.7526	0.75258245	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	2	2	1		14.61	14.61	3	2.4303E-08	2371	20190821_JH_MUT_Ubi	154.36	75.809	25436000	9619400	2329300	1889900	3929800	2978000	2205900	2484100	0	0			2315	1260	2029	6680;6681;6682;6683;6684;6685;6686;6687;6688;6689	7028;7029;7030;7031;7032;7033;7034;7035;7036;7037	7031		1324	783	10
HVNKDLGNMEENK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1657.7366	0.73659803	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	1	1	1	1		1								16.594	16.594	3	0.026281	2505	20190821_JH_MUT_Ubi	85.672	24.14	128870	0	128870	0	0	0	0	0	0	0			2316	1260	2029	6690	7038	7038	406	1324	783	1
HVNKDLGNMEENK	GlyGly (K)	1640.7577	0.75766782	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	0	1	0	1		1				1				19.197	19.197	3	0.0025153	2959	20190821_JH_MUT_Ubi	98.582	41.235	4389900	0	2488800	0	0	0	1901100	0	0	0			2317	1260	2029	6691;6692	7039;7040	7039		1324		2
HVNKDLGNMEENKK	Oxidation (M);2 GlyGly (K)	1898.8905	0.89047291	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	0	2	1	2				1						13.846	13.846	3	0.022938	2998	20190902_JH_EV_Ubi_2	70.272	33.334	187260	0	0	0	187260	0	0	0	0	0			2318	1260	2030	6693	7041	7041		1323;1324	783	1
HVPGGGNVQIQNK	Unmodified	1346.7055	0.70549632	703	sp|P27816-2|MAP4_HUMAN;sp|P27816-6|MAP4_HUMAN;sp|P27816|MAP4_HUMAN;sp|P27816-4|MAP4_HUMAN	yes	no	0	0	0	0	0						1			1	19.813	19.813	3	0.002217	4961	20190902_JH_WT_Ubi_3	95.618	45.166	7949800	0	0	0	0	0	1828600	0	0	6121200			2319	703	2031	6694;6695	7042;7043	7043				2
HVPVVYVDYPGPASLTQIYGTFNR	Unmodified	2692.3649	0.36493687	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	48.732	48.732	3	1.4689E-46	13585	20190821_JH_WT_Ubi	184.88	158.25	20589000	0	0	8442100	0	0	807550	453850	4604600	6281000			2320	1284	2032	6696;6697;6698;6699;6700;6701	7044;7045;7046;7047;7048;7049;7050	7047				7
HVQYLDFLHTVIK	Unmodified	1611.8773	0.87731267	1296	sp|Q14573|ITPR3_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1		1	1	41.71	41.71	3	2.2112E-05	12451	20190902_JH_WT_Ubi_2	133.15	82.198	41513000	1290000	2101400	17735000	490420	0	3165000	0	8709600	8022100			2321	1296	2033	6702;6703;6704;6705;6706;6707;6708	7051;7052;7053;7054;7055;7056;7057	7056				7
HVSLPSFNQLFGLSDPVNR	Unmodified	2126.0909	0.090887278	889	sp|P49593-2|PPM1F_HUMAN;sp|P49593|PPM1F_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	49.278	49.278	3	1.4913E-09	13734	20190821_JH_WT_Ubi	132.5	85.299	21661000	0	2771600	10476000	0	0	1112400	0	3760200	3541000			2322	889	2034	6709;6710;6711;6712;6713	7058;7059;7060;7061;7062	7060				5
HVSPAGAAVGIPLSEDEAK	Unmodified	1846.9425	0.94249171	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	0	0								1	1	33.105	33.105	3	0.00028365	9467	20190902_JH_WT_Ubi_2	86.005	38.46	10044000	0	0	0	0	0	0	0	10044000	0			2323	746	2035	6714;6715	7063;7064;7065	7064				3
HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAK	Unmodified	3611.9345	0.93451656	1390	sp|Q16836|HCDH_HUMAN;sp|Q16836-3|HCDH_HUMAN;sp|Q16836-2|HCDH_HUMAN	yes	no	0	0	0	0	0		1								53.288	53.288	4	0.024605	14140	20190821_JH_MUT_Ubi	26.211	10.601	2137500	0	2137500	0	0	0	0	0	0	0			2324	1390	2036	6716	7066	7066				1
HVVQSISTQQEK	Unmodified	1382.7154	0.7153923	672	sp|P24539|AT5F1_HUMAN	yes	yes	0	0	0	0	0									1	18.815	18.815	3	0.02883	4636	20190902_JH_WT_Ubi_3	62.088	27.396	0	0	0	0	0	0	0	0	0	0			2325	672	2037	6717	7067	7067				1
HVVTLLQVQDCHVLK	Unmodified	1787.9716	0.97162377	481	sp|P09001|RM03_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1				1	1	33.11	33.11	3	3.3284E-28	7307	20190821_JH_WT_Ubi	186.69	135.68	21407000	3064800	1734300	14799000	1808900	0	0	0	0	0			2326	481	2038	6718;6719;6720;6721;6722;6723	7068;7069;7070;7071;7072;7073	7071				6
HWDHLTQVK	Unmodified	1162.5883	0.5883413	727	sp|P30084|ECHM_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1			21.658	21.658	3	0.0060942	3867	20190821_JH_EV_Ubi	96.331	59.14	11919000	1424900	911530	3914800	0	3140000	1455500	1072100	0	0			2327	727	2039	6724;6725;6726;6727;6728;6729	7074;7075;7076;7077;7078;7079	7074				6
HWILPQDYDHAQAEAR	Unmodified	1948.918	0.91800829	1339	sp|Q15293|RCN1_HUMAN;sp|Q15293-2|RCN1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1		1	1	1	31.469	31.469	3	5.4374E-14	6815	20190821_JH_WT_Ubi	155.26	116.88	83243000	3717000	2542200	18989000	1281300	2099100	0	4322100	26909000	23382000			2328	1339	2040	6730;6731;6732;6733;6734;6735;6736;6737	7080;7081;7082;7083;7084;7085;7086;7087	7085				8
HWPFMVVNDAGR	Oxidation (M)	1443.6718	0.67175335	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	35.11	35.11	3	0.00026626	9786	20190902_JH_WT_Ubi_3	123.8	93.465	57915000	867510	2002400	11962000	1559700	1252000	3271400	5162200	17174000	14665000			2329	519	2041	6738;6739;6740;6741;6742;6743;6744;6745;6746	7088;7089;7090;7091;7092;7093;7094;7095;7096;7097	7097			306	10
HWPFMVVNDAGR	Unmodified	1427.6768	0.67683873	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	38.684	38.684	3	0.0012098	9383	20190821_JH_WT_Ubi	108.31	67.029	12591000	0	695500	4709300	0	0	0	0	4026900	3158900			2330	519	2041	6747;6748;6749;6750	7098;7099;7100;7101	7099				4
HWPFMVVNDAGRPK	Oxidation (M)	1668.8195	0.81948022	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	1	1	1	1	1		1	1	2		1	30.98	30.98	3	1.0384E-06	6875	20190821_JH_EV_Ubi	138.2	99.406	234280000	20923000	13501000	70584000	0	14196000	29093000	20983000	0	65003000			2331	519	2042	6751;6752;6753;6754;6755;6756;6757;6758	7102;7103;7104;7105;7106;7107;7108;7109	7102			306	8
HWPFMVVNDAGRPK	Unmodified	1652.8246	0.8245656	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	0	1	1	1	1	1		1	1	1	1	33.544	33.544	3	3.8802E-14	9651	20190902_JH_WT_Ubi_2	160.86	130.68	138780000	7827000	8160900	51088000	3608400	0	0	10995000	26727000	30377000			2332	519	2042	6759;6760;6761;6762;6763;6764;6765;6766	7110;7111;7112;7113;7114;7115;7116;7117	7116				8
HWPFMVVNDAGRPK	Oxidation (M);Deamidation (NQ)	1669.8035	0.8034958	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	1	0	1	1		1				1	1	2	1	32.483	32.483	3;4	0.0020355	9310	20190902_JH_WT_Ubi_2	101.39	60.811	34984000	0	1993600	0	0	0	2875200	2599400	14292000	13224000			2333	519	2042	6767;6768;6769;6770;6771;6772	7118;7119;7120;7121;7122;7123;7124;7125	7122	202		306	8
HWPFMVVNDAGRPK	Deamidation (NQ)	1653.8086	0.80858118	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	1	0	0	1			1			1			1	35.605	35.605	3	0.009027	9970	20190902_JH_WT_Ubi_3	91.858	51.133	8224600	0	0	4187500	0	0	836410	0	0	3200700			2334	519	2042	6773;6774;6775	7126;7127;7128	7128	202			2
HWPFQVINDGDK	Unmodified	1454.6943	0.69426293	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN	yes	no	0	0	0	0	0									1	36.975	36.975	3	0.026435	10493	20190902_JH_WT_Ubi_3	58.274	2.1871	2317600	0	0	0	0	0	0	0	0	2317600			2335	503	2043	6776	7129	7129				1
HWPFQVINDGDKPK	Unmodified	1679.842	0.8419898	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN	yes	no	0	0	0	0	1	1	1	1	1	1		1	1	1	32.506	32.506	3	6.5745E-10	7681	20190902_JH_EV_Ubi_2	149.57	83.031	73053000	9103200	5379000	14703000	7894300	6048600	0	6112100	11602000	12211000			2336	503	2044	6777;6778;6779;6780;6781;6782;6783;6784	7130;7131;7132;7133;7134;7135;7136;7137;7138	7132				9
HWPTFISDIVGASR	Unmodified	1584.8049	0.80487601	166	sp|O14980|XPO1_HUMAN	yes	yes	0	0	0	0	0		1						1		45.553	45.553	3	0.0015948	11729	20190821_JH_MUT_Ubi	92.856	45.668	1680500	0	883790	0	0	0	0	0	796750	0			2337	166	2045	6785;6786	7139;7140	7139				2
HYAMQEAKQQFVEYDK	GlyGly (K)	2127.9684	0.96838888	1289	sp|Q14257|RCN2_HUMAN;sp|Q14257-2|RCN2_HUMAN	yes	no	0	0	1	0	1		1				1	1			29.442	29.442	3	0.00011911	7097	20190902_JH_MUT_Ubi_2	109.35	66.97	5128500	0	1392300	0	0	0	1774100	1962100	0	0			2338	1289	2046	6787;6788;6789	7141;7142;7143	7142		1351		3
HYAMQEAKQQFVEYDK	Oxidation (M);GlyGly (K)	2143.9633	0.9633035	1289	sp|Q14257|RCN2_HUMAN;sp|Q14257-2|RCN2_HUMAN	yes	no	0	0	1	1	1						1	1			24.856	24.856	3	0.0032968	5406	20190902_JH_MUT_Ubi_3	81.594	51.862	5448100	0	0	0	0	0	3607700	1840400	0	0			2339	1289	2046	6790;6791	7144;7145	7145		1351	803	2
HYFQNTQGLIFVVDSNDR	Unmodified	2152.0338	0.033766329	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	41.597	41.597	3	7.7662E-34	11964	20190902_JH_WT_Ubi_3	184.92	118.13	175650000	13490000	16086000	62451000	4467100	5819400	17175000	11231000	22347000	22586000			2340	1018	2047	6792;6793;6794;6795;6796;6797;6798;6799;6800	7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156	7156				11
HYFQNTQGLIFVVDSNDR	Deamidation (NQ)	2153.0178	0.017781914	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	1	0	0	0			1			1	1	1	1	43.17	43.17	3	6.7802E-06	11551	20190821_JH_WT_Ubi	118.31	74.302	9422600	0	0	3669200	0	0	1157900	679590	1857800	2058100			2341	1018	2047	6801;6802;6803;6804;6805	7157;7158;7159;7160;7161	7159	332;333;960;961			5
HYFQNTQGLIFVVDSNDRER	Unmodified	2437.1775	0.17747045	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	0	0	0	1	1	1	1			1	1	1	1	37.717	37.717	3	3.8077E-39	8798	20190821_JH_MUT_Ubi	191.44	140.35	53986000	3762200	5145800	19551000	0	0	3284100	3361500	8352500	10529000			2342	1018	2048	6806;6807;6808;6809;6810;6811;6812	7162;7163;7164;7165;7166;7167;7168;7169	7163				8
HYFQNTQGLIFVVDSNDRER	Deamidation (NQ)	2438.1615	0.16148604	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	1	0	0	1			1					1	1	39.719	39.719	3	4.9558E-30	9872	20190821_JH_WT_Ubi	171.25	106.67	12535000	0	0	6222300	0	0	0	0	2727900	3585100			2343	1018	2048	6813;6814;6815	7170;7171;7172	7170	332;333;960;961			3
HYLDQLNHILGILGSPSQEDLNCIINLK	Unmodified	3216.6601	0.66013262	709	sp|P28482|MK01_HUMAN	yes	yes	0	0	0	0	0		1	1							54.375	54.375	4	1.1775E-05	15571	20190821_JH_WT_Ubi	84.156	39.022	11806000	0	4643600	7162400	0	0	0	0	0	0			2344	709	2049	6816;6817	7173;7174	7174				2
HYLPLSSILDTLDVMAYNK	Unmodified	2192.1187	0.11874151	440	sp|P06865|HEXA_HUMAN	yes	yes	0	0	0	0	0			1							54.495	54.495	3	0.010974	15654	20190821_JH_WT_Ubi	54.974	20.361	1078000	0	0	1078000	0	0	0	0	0	0			2345	440	2050	6818	7175	7175				1
HYQHVLAVDPEKAAQMK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2095.9997	0.99968901	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	2	1	1	1								1		24.941	24.941	3	0.024386	6634	20190902_JH_WT_Ubi_2	53.777	14.429	806750	0	0	0	0	0	0	0	806750	0			2346	1168	2051	6819	7176	7176	1001;1002	1160	728	1
HYQTLVIQLPGYPQHQTVTTTEITHHGTCQDVNHNK	Unmodified	4195.0294	0.029373014	577	sp|P15924-2|DESP_HUMAN;sp|P15924-3|DESP_HUMAN;sp|P15924|DESP_HUMAN	yes	no	0	0	0	0	0		1				1			1	32.456	32.456	6	0.022557	6959	20190821_JH_MUT_Ubi	28.737	12.669	16158000	0	5739300	0	0	0	6495300	0	0	3923900			2347	577	2052	6820;6821;6822	7177;7178;7179;7180;7181	7178				5
HYSKQVELELQQIEQKSIR	2 Deamidation (NQ)	2357.2227	0.22268931	1605	sp|Q8N1B4|VPS52_HUMAN	yes	yes	0	2	0	0	2					1					37.91	37.91	3	0.014391	9417	20190902_JH_EV_Ubi_3	70.091	7.4453	8313100	0	0	0	0	8313100	0	0	0	0			2348	1605	2053	6823	7182	7182	1131;1132			1
HYVVCSTPQSQYYLAEK	Unmodified	2071.9673	0.96732625	1165	sp|Q06187|BTK_HUMAN;sp|Q06187-2|BTK_HUMAN	yes	no	0	0	0	0	0		1								48.437	48.437	3	0.027186	12671	20190821_JH_MUT_Ubi	45.54	1.9929	2571200	0	2571200	0	0	0	0	0	0	0			2349	1165	2054	6824	7183	7183				1
HYYTGTQGLIFVVDCADR	Unmodified	2113.9891	0.98912432	1051	sp|P62330|ARF6_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1		42.055	42.055	3	1.3048E-08	10457	20190821_JH_MUT_Ubi	128.26	86.019	13926000	0	2207100	5471800	0	0	1569000	1612200	3066000	0			2350	1051	2055	6825;6826;6827;6828;6829	7184;7185;7186;7187;7188;7189	7184				6
HYYTGTQGLIFVVDCADRDR	Unmodified	2385.1172	0.11717838	1051	sp|P62330|ARF6_HUMAN	yes	yes	0	0	0	0	1								1	1	38.964	38.964	3	0.00060671	11055	20190902_JH_WT_Ubi_3	88.319	65.445	10255000	0	0	0	0	0	0	0	4398600	5856800			2351	1051	2056	6830;6831	7190;7191	7191				2
HYYYAGVCVPACPPNTYR	Unmodified	2186.9666	0.96661474	461	sp|P08069|IGF1R_HUMAN	yes	yes	0	0	0	0	0								1	1	35.076	35.076	3	0.01371	10250	20190902_JH_WT_Ubi_2	53.491	27.343	13164000	0	0	0	0	0	0	0	7305500	5858000			2352	461	2057	6832;6833	7192;7193	7192				2
IAAAGLDVTSPEPLPTNHPLLTLK	Unmodified	2467.3686	0.36862527	2106	sp|Q9UBQ7|GRHPR_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1			1	1	44.076	44.076	3	1.3415E-09	11691	20190821_JH_WT_Ubi	113.23	91.664	24424000	3016300	1826800	8143600	0	1374300	0	0	3314000	6749500			2353	2106	2058	6834;6835;6836;6837;6838;6839	7194;7195;7196;7197;7198;7199	7197				6
IAALQAFADQLIAAGHYAK	Unmodified	1971.0578	0.057796236	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0		1								49.741	49.741	3	0.011106	13102	20190821_JH_MUT_Ubi	54.805	21.12	1566700	0	1566700	0	0	0	0	0	0	0			2354	1262	2059	6840	7200	7200				1
IAEFTTNLTEEEEK	Unmodified	1652.7781	0.77811172	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0									1	35.427	35.427	2	1.6487E-07	9917	20190902_JH_WT_Ubi_3	143.55	99.122	24547000	0	0	0	0	0	0	0	0	24547000			2355	776	2060	6841	7201	7201				1
IAEQQKAQAEVEGLGK	GlyGly (K)	1811.9377	0.93774068	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	1	0	1							1	1		27.782	27.782	3	0.0016495	7689	20190902_JH_WT_Ubi_2	86.548	45.823	4975100	0	0	0	0	0	0	2183800	2791300	0			2356	1332	2061	6842;6843	7202;7203	7203		1384		2
IAESNHIKLSGSNPYTTVTPQIINSK	GlyGly (K)	2925.5196	0.51959961	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	1	0	1		1					1			34.416	34.416	4	0.0038666	7706	20190821_JH_MUT_Ubi	52.79	24.373	5031400	0	2945700	0	0	0	0	2085700	0	0			2357	214	2062	6844;6845	7204;7205	7204		195		2
IAGKIIPAIATTTATVSGLVALEMIK	Oxidation (M);GlyGly (K)	2711.5507	0.55068873	69	sp|A0AVT1-2|UBA6_HUMAN;sp|A0AVT1|UBA6_HUMAN	yes	no	0	0	1	1	1		1	1			1	1	1	1	52.525	52.525	3	0.00011081	15184	20190902_JH_WT_Ubi_3	80.835	57.234	20909000	0	3236600	9596600	0	0	984350	951340	3102500	3037400			2358	69	2063	6846;6847;6848;6849;6850;6851	7206;7207;7208;7209;7210;7211;7212;7213;7214	7213		68	40	9
IAIFGATGQTGLTTLAQAVQAGYEVTVLVR	Unmodified	3047.6655	0.66553557	722	sp|P30043|BLVRB_HUMAN	yes	yes	0	0	0	0	0		1								57.229	57.229	3	0.00015904	15100	20190821_JH_MUT_Ubi	66.828	41.615	1571000	0	1571000	0	0	0	0	0	0	0			2359	722	2064	6852	7215	7215				1
IAIPGLAGAGNSVLLVSNLNPER	Unmodified	2274.2696	0.26957993	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1		52.48	52.48	3	7.2683E-23	13487	20190902_JH_MUT_Ubi_3	156.51	97.84	23988000	3414100	3131100	6349500	644390	1341700	2663000	3729300	2715300	0			2360	690	2065	6853;6854;6855;6856;6857;6858;6859;6860	7216;7217;7218;7219;7220;7221;7222;7223	7221				8
IALALTAISLGTARPPPSMSAAGLAAR	Unmodified	2576.4472	0.44722671	2192	sp|Q9UQ35|SRRM2_HUMAN	yes	yes	0	0	0	0	1			1							47.046	47.046	3	0.00031284	12870	20190821_JH_WT_Ubi	79.935	59.31	2904500	0	0	2904500	0	0	0	0	0	0			2361	2192	2066	6861	7224	7224				1
IALALTAISLGTARPPPSMSAAGLAAR	Oxidation (M)	2592.4421	0.44214134	2192	sp|Q9UQ35|SRRM2_HUMAN	yes	yes	0	0	0	1	1								1	1	44.045	44.045	3	0.00032715	13283	20190902_JH_WT_Ubi_2	76.156	45.666	6866400	0	0	0	0	0	0	0	2707700	4158600			2362	2192	2066	6862;6863	7225;7226	7225			1137	2
IANDNSLNHEYLPILGLAEFR	Unmodified	2398.2281	0.22810904	598	sp|P17174|AATC_HUMAN;sp|P17174-2|AATC_HUMAN	yes	no	0	0	0	0	0			1						1	50.219	50.219	3	0.0036617	14688	20190902_JH_WT_Ubi_3	61.767	27.932	2203500	0	0	1215900	0	0	0	0	0	987570			2363	598	2067	6864;6865	7227;7228	7228				2
IAQLEEELEEEQGNTELINDR	Unmodified	2471.1664	0.16635622	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0				1	1			1	1	42.846	42.846	3	1.4825E-36	12444	20190902_JH_WT_Ubi_3	175.85	142.99	10108000	0	0	0	686740	1113000	0	0	3075900	5231900			2364	776	2068	6866;6867;6868;6869	7229;7230;7231;7232	7232				4
IAVAAQNCYKVTNGAFTGEISPGMIK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2870.3943	0.39426445	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN	yes	no	0	1	1	1	1			1					1		38.778	38.778	3	7.9697E-20	9421	20190821_JH_WT_Ubi	144.33	108.34	5394300	0	0	3195700	0	0	0	0	2198600	0			2365	997	2069	6870;6871	7233;7234	7233	326	977	610	2
ICGLDPTSTLGIYFEVVNQHNTPIPQGGR	Unmodified	3182.5819	0.5818823	1351	sp|Q15437|SC23B_HUMAN	yes	yes	0	0	0	0	0	1									52.748	52.748	3	3.6572E-05	14178	20190821_JH_EV_Ubi	76.471	52.195	1551100	1551100	0	0	0	0	0	0	0	0			2366	1351	2070	6872	7235	7235				1
ICGLSPTTTLAIYFEVVNQHNAPIPQGGR	Unmodified	3152.6077	0.60770312	1350	sp|Q15436-2|SC23A_HUMAN;sp|Q15436|SC23A_HUMAN	yes	no	0	0	0	0	0		1	1							52.582	52.582	3	1.5489E-05	13928	20190821_JH_MUT_Ubi	82.761	53.492	11120000	0	3471000	7649200	0	0	0	0	0	0			2367	1350	2071	6873;6874	7236;7237;7238	7236				3
ICWLAIPEPNGVIK	Unmodified	1608.8698	0.86978446	1793	sp|Q96K78|AGRG7_HUMAN	yes	yes	0	0	0	0	0								1	1	42.569	42.569	3	0.011298	12280	20190902_JH_WT_Ubi_3	67.456	11.68	11211000	0	0	0	0	0	0	0	5922000	5289000			2368	1793	2072	6875;6876	7239;7240	7240				2
IDAHLNKVCPTTETIYNDEFYTK	GlyGly (K)	2885.3542	0.35417377	69	sp|A0AVT1-2|UBA6_HUMAN;sp|A0AVT1|UBA6_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1	2	1	36.296	36.296	3;4	1.5929E-22	8368	20190821_JH_MUT_Ubi	155.08	120.17	121430000	0	3023000	43935000	0	989490	20291000	3060800	22754000	27380000			2369	69	2073	6877;6878;6879;6880;6881;6882;6883;6884	7241;7242;7243;7244;7245;7246;7247;7248	7242		69		8
IDDPTDSKPEDWDKPEHIPDPDAK	Unmodified	2759.2562	0.25623386	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	2			1		1			1		31.678	31.678	4;5	0.0095001	8999	20190902_JH_WT_Ubi_2	52.451	32.553	35594000	0	0	16061000	0	2083800	0	0	17449000	0			2370	702	2074	6885;6886;6887	7249;7250;7251	7251				3
IDEIKNDNVQDTAEQK	GlyGly (K)	1972.9338	0.93377751	678	sp|P25445-6|TNR6_HUMAN;sp|P25445|TNR6_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1			24.073	24.073	3	4.2944E-10	5111	20190902_JH_EV_Ubi_3	142.91	90.333	12680000	701370	1076500	1912600	3646800	2460000	1180600	1702000	0	0			2371	678	2075	6888;6889;6890;6891;6892;6893;6894	7252;7253;7254;7255;7256;7257;7258	7254		660		7
IDEKNFVVVMVTK	Oxidation (M);GlyGly (K)	1650.8651	0.86509301	964;963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN;sp|P54727|RD23B_HUMAN	no	no	0	0	1	1	1		1				1	1	1	1	34.17	34.17	3	0.0057987	7616	20190821_JH_MUT_Ubi	88.101	59.295	15671000	0	1941300	0	0	0	3370000	3166800	3387100	3806100			2372	963;964	2076	6895;6896;6897;6898;6899	7259;7260;7261;7262;7263	7259		931;934	601;603	5
IDEKNFVVVMVTK	GlyGly (K)	1634.8702	0.87017839	964;963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN;sp|P54727|RD23B_HUMAN	no	no	0	0	1	0	1						1				38.876	38.876	3	0.032624	10738	20190902_JH_MUT_Ubi_2	58.116	8.9953	2018600	0	0	0	0	0	2018600	0	0	0			2373	963;964	2076	6900	7264	7264		931;934		1
IDEKSLIK	GlyGly (K)	1058.5972	0.59717465	112	sp|O00186|STXB3_HUMAN	yes	yes	0	0	1	0	1			1							25.172	25.172	3	0.02253	4894	20190821_JH_WT_Ubi	89.698	10.759	2590300	0	0	2590300	0	0	0	0	0	0			2374	112	2077	6901	7265	7265		96		1
IDEMPEAAVKSTANK	Oxidation (M);GlyGly (K)	1732.8302	0.83016406	928	sp|P51858|HDGF_HUMAN	yes	yes	0	0	1	1	1							1			23.319	23.319	3	0.027308	5014	20190902_JH_MUT_Ubi_3	59.248	14.634	1223000	0	0	0	0	0	0	1223000	0	0			2375	928	2078	6902	7266	7266		894	584	1
IDENQKLVDK	GlyGly (K)	1314.6779	0.67794416	61		yes	no	0	0	1	0	1					1		1			20.937	20.937	3	0.0075049	4394	20190902_JH_EV_Ubi_3	95.523	26.178	4950400	0	0	0	0	2899100	0	2051300	0	0	+		2376	61	2079	6903;6904	7267;7268	7267		62		2
IDFSDIMVLGDINTKPK	Oxidation (M);GlyGly (K)	2035.0296	0.029592154	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	1	1	1	1				1	1			44.781	44.781	3	7.349E-14	11508	20190821_JH_MUT_Ubi	153.41	116.23	14183000	2166200	2989400	0	0	0	5403900	3623200	0	0			2377	970	2080	6905;6906;6907;6908	7269;7270;7271;7272	7270		945	606	4
IDFSDIMVLGDINTKPK	GlyGly (K)	2019.0347	0.034677532	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1		1				1	1			48.715	48.715	3	3.043E-14	12892	20190821_JH_MUT_Ubi	156.17	122.87	6874600	0	2989800	0	0	0	2524200	1360600	0	0			2378	970	2080	6909;6910;6911	7273;7274;7275	7273		945		3
IDFYFDENPYFENKVLSK	GlyGly (K)	2381.1216	0.12157828	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN	yes	no	0	0	1	0	1		1						1		46.672	46.672	3	0.0076615	12091	20190821_JH_MUT_Ubi	63.614	33.531	4130900	0	2006300	0	0	0	0	0	2124700	0			2379	1131	2081	6912;6913	7276;7277	7276		1125;1126		2
IDGNLVVRPYTPISSDDDK	Unmodified	2103.0484	0.048413341	375	sp|P00387-2|NB5R3_HUMAN;sp|P00387|NB5R3_HUMAN;sp|P00387-3|NB5R3_HUMAN	yes	no	0	0	0	0	1			1					1	1	36.872	36.872	3	7.2219E-10	8745	20190821_JH_WT_Ubi	134.93	90.462	45187000	0	0	14376000	0	0	0	0	13457000	17354000			2380	375	2082	6914;6915;6916	7278;7279;7280	7278				3
IDIDPEETVKALK	GlyGly (K)	1583.8407	0.8406524	964	sp|P54727|RD23B_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1	1	1		37.652	37.652	3	1.8942E-06	8738	20190821_JH_MUT_Ubi	144.28	90.277	21384000	5575000	2981700	3613200	0	0	3511200	4012900	1689600	0			2381	964	2083	6917;6918;6919;6920;6921;6922	7281;7282;7283;7284;7285;7286	7282		935		6
IDNDGDGFVTTEELKTWIK	GlyGly (K)	2294.1067	0.1066565	1339	sp|Q15293|RCN1_HUMAN;sp|Q15293-2|RCN1_HUMAN	yes	no	0	0	1	0	1		1								45.567	45.567	3	0.034426	11731	20190821_JH_MUT_Ubi	44.816	21.09	816690	0	816690	0	0	0	0	0	0	0			2382	1339	2084	6923	7287	7287				1
IDQLEGDHQLIQEALIFDNK	Unmodified	2338.1805	0.18049015	537	sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	yes	no	0	0	0	0	0				1						46.128	46.128	3	0.00044099	11612	20190902_JH_EV_Ubi_2	79.88	38.02	790890	0	0	0	790890	0	0	0	0	0			2383	537	2085	6924	7288	7288				1
IDSLSAQLSQLQKQLAAK	GlyGly (K)	2055.1324	0.13241774	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	44.073	44.073	3	9.512E-43	11208	20190821_JH_MUT_Ubi	197.73	161.26	67484000	4944500	8131000	15266000	1182300	2577100	10495000	10512000	5791500	8584600			2384	390;391	2086	6925;6926;6927;6928;6929;6930;6931;6932;6933	7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299	7293		360		11
IDTHNIIVNQLVFPDPEK	Unmodified	2091.1001	0.10005498	212	sp|O43681|ASNA_HUMAN	yes	yes	0	0	0	0	0			1						1	45.071	45.071	3	0.0024749	12115	20190821_JH_WT_Ubi	71.929	32.42	2423000	0	0	1619800	0	0	0	0	0	803190			2385	212	2087	6934;6935	7300;7301	7300				2
IDVTAPDVSIEEPEGKLK	GlyGly (K)	2053.0579	0.057915394	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			36.798	36.798	3	4.1444E-15	8557	20190821_JH_MUT_Ubi	156.17	113.84	25288000	5424500	3456600	0	4397600	2806200	4439900	4763100	0	0			2386	1190	2088	6936;6937;6938;6939;6940;6941	7302;7303;7304;7305;7306;7307;7308;7309	7306		1210;1211		8
IEAELQDICNDVLELLDKYLIPNATQPESK	GlyGly (K);Deamidation (NQ)	3585.776	0.77600981	749	sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN	yes	no	0	1	1	0	1		1								56.183	56.183	3	0.0013653	14958	20190821_JH_MUT_Ubi	74.525	39.15	1690400	0	1690400	0	0	0	0	0	0	0			2387	749	2089	6942	7310	7310	263	719		1
IECDDKGDGSCDVR	GlyGly (K)	1738.6887	0.68866156	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	no	no	0	0	1	0	1			1							19.282	19.282	3	0.01312	3535	20190821_JH_WT_Ubi	70.26	40.084	1266400	0	0	1266400	0	0	0	0	0	0			2388	637	2090	6943	7311	7311		607		1
IEDASNPLLLKR	GlyGly (K)	1481.8202	0.82019173	879	sp|P49137|MAPK2_HUMAN	yes	yes	0	0	1	0	1						1				35.148	35.148	3	0.015816	9244	20190902_JH_MUT_Ubi_2	76.927	14.589	23289000	0	0	0	0	0	23289000	0	0	0			2389	879	2091	6944	7312	7312		856		0
IEDGNDFGVAIQEKVLER	GlyGly (K)	2145.0702	0.070211415	2160	sp|Q9UL46|PSME2_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1	1	41.064	41.064	3	2.4122E-20	11525	20190902_JH_MUT_Ubi_2	167.28	108.82	28325000	2812200	4709300	7163800	0	533420	4923100	3982000	2054800	2146800			2390	2160	2092	6945;6946;6947;6948;6949;6950;6951;6952	7313;7314;7315;7316;7317;7318;7319;7320;7321	7316		2018		9
IEDLSQQAQLAAAEK	Unmodified	1613.8261	0.82606496	104	sp|Q13765|NACA_HUMAN;sp|E9PAV3-2|NACAM_HUMAN;sp|E9PAV3|NACAM_HUMAN	yes	no	0	0	0	0	0							1			33.151	33.151	2	0.024552	8093	20190902_JH_MUT_Ubi_3	59.796	1.201	756570	0	0	0	0	0	0	756570	0	0			2391	104	2093	6953	7322	7322				0
IEDLSQQAQLAAAEKFK	GlyGly (K)	2003.0324	0.032369346	104	sp|Q13765|NACA_HUMAN;sp|E9PAV3-2|NACAM_HUMAN;sp|E9PAV3|NACAM_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	1	36.603	36.603	3	3.3513E-19	9844	20190902_JH_MUT_Ubi_2	163.91	122.68	30919000	0	6405500	5994000	3754700	2571700	4669200	3890800	3633200	0			2392	104	2094	6954;6955;6956;6957;6958;6959;6960;6961	7323;7324;7325;7326;7327;7328;7329;7330	7326		86;87		8
IEDVGSDEEDDSGKDK	GlyGly (K)	1850.7654	0.76537478	465;1422	sp|P08238|HS90B_HUMAN;sp|Q58FF8|H90B2_HUMAN	no	no	0	0	1	0	1	1			1	1					20.294	20.294	3	1.9575E-13	4225	20190902_JH_EV_Ubi_3	149.3	119.19	2379800	419290	0	0	796830	1163600	0	0	0	0			2393	465;1422	2095	6962;6963;6964	7331;7332;7333	7333		475		3
IEEELGSKAK	GlyGly (K)	1216.6299	0.62993134	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	1	0	1	1									19.905	19.905	3	0.021094	3379	20190821_JH_EV_Ubi	73.841	17.031	936800	936800	0	0	0	0	0	0	0	0			2394	435	2096	6965	7334	7334		430		1
IEEENQDLMHFNLQKKR	Oxidation (M);3 Deamidation (NQ)	2190.0263	0.02629769	1398	sp|Q2KHR3-2|QSER1_HUMAN;sp|Q2KHR3|QSER1_HUMAN	yes	no	0	3	0	1	2	1									34.035	34.035	3	0.017278	7983	20190821_JH_EV_Ubi	53.565	9.7037	2859500	2859500	0	0	0	0	0	0	0	0			2395	1398	2097	6966	7335	7335	440;441;1057		861	1
IEGDMIVCAAYAHELPK	Unmodified	1915.9172	0.91720493	857	sp|P46777|RL5_HUMAN	yes	yes	0	0	0	0	0			1					1	1	39.009	39.009	3	2.2266E-05	9545	20190821_JH_WT_Ubi	111.07	59.231	15170000	0	0	6452500	0	0	0	0	3898000	4819800			2396	857	2098	6967;6968;6969	7336;7337;7338	7336				3
IEGFTNVKELYGK	GlyGly (K)	1610.8304	0.83042206	159	sp|O14908|GIPC1_HUMAN	yes	yes	0	0	1	0	1		1					1			34.626	34.626	3	0.020021	7738	20190821_JH_MUT_Ubi	67.019	36.13	4005700	0	1523500	0	0	0	0	2482200	0	0			2397	159	2099	6970;6971	7339;7340	7339		132		2
IEGLDIHFIHVKPPQLPAGHTPK	Unmodified	2543.4013	0.4012628	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	0	1	1		1	1		1	1			37.085	37.085	5	0.011252	9247	20190902_JH_MUT_Ubi_3	46.953	26.514	112840000	7031500	0	96169000	1989000	0	4790200	2863300	0	0			2398	441	2100	6972;6973;6974;6975;6976	7341;7342;7343;7344;7345;7346	7344				6
IEGYEDQVLITEHGDLGNSR	Unmodified	2244.0659	0.065854319	941	sp|P52907|CAZA1_HUMAN	yes	yes	0	0	0	0	0			1						1	36.204	36.204	3	0.0058701	8494	20190821_JH_WT_Ubi	60.09	29.547	9214800	0	0	5542900	0	0	0	0	0	3671900			2399	941	2101	6977;6978	7347;7348	7347				2
IEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNK	Unmodified	3840.9444	0.94436974	2061	sp|Q9NXR7-4|BABA2_HUMAN;sp|Q9NXR7-3|BABA2_HUMAN;sp|Q9NXR7|BABA2_HUMAN;sp|Q9NXR7-1|BABA2_HUMAN	yes	no	0	0	0	0	0		1	1							50.112	50.112	5	0.032026	13975	20190821_JH_WT_Ubi	25.531	5.462	11514000	0	4102900	7411100	0	0	0	0	0	0			2400	2061	2102	6979;6980	7349;7350	7350				2
IEILEKTTTIYEEDK	GlyGly (K)	1937.9834	0.98335347	1139	sp|Q02241-3|KIF23_HUMAN;sp|Q02241-2|KIF23_HUMAN;sp|Q02241|KIF23_HUMAN	yes	no	0	0	1	0	1								1		36.908	36.908	3	0.0056092	10774	20190902_JH_WT_Ubi_2	75.961	35.384	3335500	0	0	0	0	0	0	0	3335500	0			2401	1139	2103	6981	7351;7352	7351		1134		2
IEINFPAEYPFKPPK	GlyGly (K)	1902.988	0.98798534	1095	sp|P68036-2|UB2L3_HUMAN;sp|P68036|UB2L3_HUMAN;sp|P68036-3|UB2L3_HUMAN	yes	no	0	0	1	0	1		1	1				1			43.004	43.004	3	0.00053922	11240	20190902_JH_MUT_Ubi_3	105	56.824	3478000	0	1023300	1177600	0	0	0	1277100	0	0			2402	1095	2104	6982;6983;6984	7353;7354;7355	7354		1093		3
IEIPIHIVPHVTIGK	Unmodified	1664.9978	0.99776216	856	sp|P46736-2|BRCC3_HUMAN;sp|P46736-3|BRCC3_HUMAN;sp|P46736|BRCC3_HUMAN;sp|P46736-4|BRCC3_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1	1	1	1	39.517	39.517	4	0.0028299	11284	20190902_JH_WT_Ubi_3	78.529	58.422	76709000	25662000	0	11654000	12886000	8302200	3865700	4403900	4491600	5442800			2403	856	2105	6985;6986;6987;6988;6989;6990;6991;6992	7356;7357;7358;7359;7360;7361;7362;7363	7363				8
IEKATDGSLQSEDWALNMEICDIINETEEGPK	Oxidation (M);GlyGly (K)	3764.7033	0.70331516	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN	yes	no	0	0	1	1	1			1							52.835	52.835	3	7.1068E-06	14944	20190821_JH_WT_Ubi	76.109	50.39	2342400	0	0	2342400	0	0	0	0	0	0			2404	260	2106	6993	7364	7364		248	113	1
IEKQIATSGPPPEGGLR	GlyGly (K)	1862.985	0.98502522	1658	sp|Q8NHG7|SVIP_HUMAN	yes	yes	0	0	1	0	1				1						27.586	27.586	3	0.027237	6133	20190902_JH_EV_Ubi_2	58.164	22.505	0	0	0	0	0	0	0	0	0	0			2405	1658	2107	6994	7365	7365		1658		1
IELEEMGPSLDLVLR	Oxidation (M)	1728.8968	0.89678707	1965	sp|Q9H7B2|RPF2_HUMAN	yes	yes	0	0	0	1	0			1			1			1	39.144	39.144	3	0.0047089	9721	20190821_JH_WT_Ubi	76.588	11.79	19572000	0	0	11753000	0	0	3803000	0	0	4016000			2406	1965	2108	6995;6996;6997	7366;7367;7368	7367			1067	3
IELGDVTPHNIKQLK	GlyGly (K)	1817.9999	0.99994701	1922	sp|Q9GZZ1|NAA50_HUMAN;sp|Q9GZZ1-2|NAA50_HUMAN	yes	no	0	0	1	0	1							1			31.59	31.59	4	0.017038	7561	20190902_JH_MUT_Ubi_3	59.227	33.115	1427500	0	0	0	0	0	0	1427500	0	0			2407	1922	2109	6998	7369	7369		1858		1
IESLSSQLSNLQKESR	GlyGly (K)	1931.9912	0.99123281	631	sp|P20700|LMNB1_HUMAN	yes	yes	0	0	1	0	1			1			1	1			33.248	33.248	3	2.6714E-05	7455	20190821_JH_WT_Ubi	116.58	70.592	11305000	0	0	2978700	0	0	5646800	2679500	0	0			2408	631	2110	6999;7000;7001	7370;7371;7372	7372		603		3
IEVQDTSGGTTALRPSASTQALSSSVSSSK	Unmodified	2951.4684	0.4683519	1374	sp|Q16531|DDB1_HUMAN	yes	yes	0	0	0	0	1		1	1		1					33.277	33.277	3	3.8686E-10	7406	20190821_JH_WT_Ubi	100.95	80.649	7013100	0	722260	4952100	0	1338700	0	0	0	0			2409	1374	2111	7002;7003;7004	7373;7374;7375	7375				3
IEWLESHQDADIEDFK	Unmodified	1973.9007	0.90068647	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0	1		1	1		1	1	1	1	40.048	40.048	3	5.0972E-06	10006	20190821_JH_WT_Ubi	121.45	75.164	56248000	2419700	0	23671000	1200400	0	600550	566900	15761000	12029000			2410	517	2112	7005;7006;7007;7008;7009;7010;7011	7376;7377;7378;7379;7380;7381;7382;7383	7381				8
IFKGCNIENACYPLGICAER	GlyGly (K)	2498.1505	0.15046912	754	sp|P32320|CDD_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	37.537	37.537	3	3.7061E-26	10114	20190902_JH_MUT_Ubi_2	171.04	133.35	48544000	0	2905900	20060000	0	0	2999600	2228200	9305400	11045000			2411	754	2113	7012;7013;7014;7015;7016;7017	7384;7385;7386;7387;7388;7389;7390	7386		724		7
IFPPETSASVAATPPPSTASAPAAVNSSASADK	Unmodified	3096.5251	0.5251385	496	sp|P09874|PARP1_HUMAN	yes	yes	0	0	0	0	0	1			1	1					38.605	38.605	3	0.020917	9723	20190821_JH_EV_Ubi	45.327	20.683	772220	0	0	0	772220	0	0	0	0	0			2412	496	2114	7018;7019;7020	7391;7392;7393	7391				3
IFSFAHQTISALIK	Unmodified	1574.8821	0.8820637	1810	sp|Q96QK1|VPS35_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1		42.295	42.295	3	3.4127E-05	11927	20190902_JH_MUT_Ubi_2	122.52	82.79	56585000	1186800	9252800	24386000	0	0	7760900	5283900	8714900	0			2413	1810	2115	7021;7022;7023;7024;7025;7026	7394;7395;7396;7397;7398;7399	7396				6
IFSGPSSEQFGYAVQQFINPK	Unmodified	2343.1535	0.15354711	599	sp|P17301|ITA2_HUMAN	yes	yes	0	0	0	0	0			1					1		51.088	51.088	3	6.3937E-09	14304	20190821_JH_WT_Ubi	120.08	67.215	3215700	0	0	2032400	0	0	0	0	1183300	0			2414	599	2116	7027;7028	7400;7401	7400				2
IFSSLHVSGEQLSQLTGVAAILR	Unmodified	2425.3329	0.33290846	1866	sp|Q9BRX2|PELO_HUMAN	yes	yes	0	0	0	0	0		1				1				49.654	49.654	3	2.1441E-09	13156	20190821_JH_MUT_Ubi	120.32	69.379	8976700	0	8304800	0	0	0	671920	0	0	0			2415	1866	2117	7029;7030	7402;7403	7402				2
IFTASNVSSVPLPAENVTITAGQR	Unmodified	2471.302	0.30200227	1281	sp|Q14157-4|UBP2L_HUMAN;sp|Q14157-1|UBP2L_HUMAN;sp|Q14157-3|UBP2L_HUMAN;sp|Q14157|UBP2L_HUMAN;sp|Q14157-5|UBP2L_HUMAN	yes	no	0	0	0	0	0	1	1			1		1	1	1	44.983	44.983	3	1.919E-06	11643	20190821_JH_MUT_Ubi	90.308	47.601	9818500	1514600	2203300	0	0	1043600	0	1388000	1362600	2306500			2416	1281	2118	7031;7032;7033;7034;7035;7036	7404;7405;7406;7407;7408;7409	7406				5
IFVGGLSPDTPEEKIR	GlyGly (K)	1870.9789	0.97887721	1270	sp|Q14103-4|HNRPD_HUMAN;sp|Q14103-3|HNRPD_HUMAN;sp|Q14103-2|HNRPD_HUMAN;sp|Q14103|HNRPD_HUMAN	yes	no	0	0	1	0	1						1	1		1	35.516	35.516	3	3.9984E-09	9507	20190902_JH_MUT_Ubi_2	135.02	66.973	10612000	0	0	0	0	0	3430400	2362200	0	4819500			2417	1270	2119	7037;7038;7039	7410;7411;7412	7410		1335		3
IFYPEIEEVQALDDTER	Deamidation (NQ)	2066.9684	0.96843169	759	sp|P33316-2|DUT_HUMAN;sp|P33316|DUT_HUMAN	yes	no	0	1	0	0	0				1						47.477	47.477	2	0.0023942	11814	20190902_JH_EV_Ubi_2	103.13	67.489	0	0	0	0	0	0	0	0	0	0			2418	759	2120	7040	7413	7413	892			1
IGAEVYHNLK	Unmodified	1142.6084	0.60840804	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	0	0	0	1	1								25.168	25.168	3	0.035195	4254	20190821_JH_MUT_Ubi	55.064	25.902	685560	0	685560	0	0	0	0	0	0	0			2419	435	2121	7041;7042	7414;7415	7415				2
IGDFGLVTSLK	Unmodified	1148.6441	0.64412484	620	sp|P19525-2|E2AK2_HUMAN;sp|P19525|E2AK2_HUMAN	yes	no	0	0	0	0	0								1		43.172	43.172	2	0.0034488	12928	20190902_JH_WT_Ubi_2	104.43	48.93	613920	0	0	0	0	0	0	0	613920	0			2420	620	2122	7043	7416	7416				1
IGDLQAFQGHGAGNLAGLK	Unmodified	1865.9748	0.97479489	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	0	0	0	1				1				1	36.56	36.56	3	0.0034084	8982	20190902_JH_EV_Ubi_3	66.826	37.498	13595000	4311200	0	0	0	2667300	0	0	0	6616300			2421	462;463	2123	7044;7045;7046	7417;7418;7419	7418				3
IGEHTPSALAIMENANVLAR	Oxidation (M)	2122.0841	0.084087341	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	1	0	1						1	1	1	36.581	36.581	3	4.3064E-10	10283	20190902_JH_WT_Ubi_3	133.86	90.674	48808000	1502600	0	0	0	0	0	3359700	21133000	22813000			2422	400	2124	7047;7048;7049;7050	7420;7421;7422;7423	7423			191	3
IGEHTPSALAIMENANVLAR	Unmodified	2106.0892	0.089172718	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	0	0							1			43.264	43.264	3	4.4286E-05	11433	20190902_JH_MUT_Ubi_3	97.129	62.22	2224700	0	0	0	0	0	0	2224700	0	0			2423	400	2124	7051	7424	7424				1
IGEHTPSALAIMENANVLAR	Oxidation (M);Deamidation (NQ)	2123.0681	0.068102925	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	1	0	1	0								1		37.771	37.771	3	5.7194E-07	11085	20190902_JH_WT_Ubi_2	121.72	79.446	5176800	0	0	0	0	0	0	0	5176800	0			2424	400	2124	7052	7425	7425	134		191	1
IGEWELIQESGVPLKPLFGPGYTGIR	GlyGly (K)	2969.5651	0.56509324	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	1	0	1		1	1					1		53.097	53.097	3	0.0005547	15831	20190902_JH_WT_Ubi_2	70.593	37.245	12835000	0	2590500	5624500	0	0	0	0	4619600	0			2425	849	2125	7053;7054;7055	7426;7427;7428	7428		826		3
IGFSGPKLEGGEVDLK	GlyGly (K)	1758.9152	0.91521432	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			35.755	35.755	3	1.8151E-07	8798	20190821_JH_EV_Ubi	127.07	92.386	23153000	4831500	3495700	0	3525400	1731700	5345800	4222600	0	0			2426	1190	2126	7056;7057;7058;7059;7060;7061	7429;7430;7431;7432;7433;7434	7429		1212;1213		6
IGGQVHAVQALVQLFLER	Unmodified	1977.116	0.11597982	1537	sp|Q7Z5K2|WAPL_HUMAN;sp|Q7Z5K2-2|WAPL_HUMAN;sp|Q7Z5K2-3|WAPL_HUMAN	yes	no	0	0	0	0	0		1								53.821	53.821	3	0.0045779	14324	20190821_JH_MUT_Ubi	66.022	37.932	402810	0	402810	0	0	0	0	0	0	0			2427	1537	2127	7062	7435	7435				1
IGGVQQDTILAEGLHFR	Unmodified	1852.9795	0.97954591	1840	sp|Q99623-2|PHB2_HUMAN;sp|Q99623|PHB2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	41.208	41.208	3	4.0721E-10	10476	20190821_JH_WT_Ubi	136.34	106.7	59770000	0	2715300	26955000	0	0	3081100	1784400	12735000	12499000			2428	1840	2128	7063;7064;7065;7066;7067;7068	7436;7437;7438;7439;7440;7441	7439				6
IGHVGMQIEHIIENIVAVTK	Oxidation (M)	2216.1987	0.19872317	310	sp|O76021|RL1D1_HUMAN	yes	yes	0	0	0	1	0			1							50.535	50.535	3	0.0075133	14194	20190821_JH_WT_Ubi	75.743	48.03	0	0	0	0	0	0	0	0	0	0			2429	310	2129	7069	7442	7442			145	1
IGLIHGHQVIPWGDMASLALLQR	Oxidation (M)	2540.3686	0.36858246	2104	sp|Q9UBQ0|VPS29_HUMAN;sp|Q9UBQ0-2|VPS29_HUMAN	yes	no	0	0	0	1	0		1	1			1		1	1	44.06	44.06	4	0.0021028	11745	20190821_JH_WT_Ubi	62.556	35.837	75471000	0	4347000	37887000	0	0	2353100	0	12889000	17995000			2430	2104	2130	7070;7071;7072;7073;7074	7443;7444;7445;7446;7447	7445			1117	5
IGLIHGHQVIPWGDMASLALLQR	Unmodified	2524.3737	0.37366784	2104	sp|Q9UBQ0|VPS29_HUMAN;sp|Q9UBQ0-2|VPS29_HUMAN	yes	no	0	0	0	0	0			1							48.307	48.307	4	0.0014369	13355	20190821_JH_WT_Ubi	63.443	34.574	15394000	0	0	15394000	0	0	0	0	0	0			2431	2104	2130	7075	7448	7448				1
IGNVEISQVTIVGIIR	Unmodified	1710.004	0.003969751	578	sp|P15927|RFA2_HUMAN;sp|P15927-2|RFA2_HUMAN;sp|P15927-3|RFA2_HUMAN	yes	no	0	0	0	0	0		1								48.84	48.84	2	0.0014094	12832	20190821_JH_MUT_Ubi	96.866	62.865	421140	0	421140	0	0	0	0	0	0	0			2432	578	2131	7076	7449	7449				0
IGSLIDVNQSKDPEGLR	GlyGly (K)	1954.012	0.011968255	1023	sp|P61326-2|MGN_HUMAN;sp|P61326|MGN_HUMAN;sp|Q96A72|MGN2_HUMAN	yes	no	0	0	1	0	1		1						1		34.227	34.227	3	0.0057764	7467	20190821_JH_MUT_Ubi	70.47	12.666	6237100	0	1353800	0	0	0	0	0	4883300	0			2433	1023	2132	7077;7078	7450;7451	7450		1006		2
IGTYTGPLQHGIVYSGGSSDTICDLLGAK	Unmodified	2979.4648	0.46478685	899	sp|P49902-2|5NTC_HUMAN;sp|P49902|5NTC_HUMAN	yes	no	0	0	0	0	0			1							45.812	45.812	3	0.0010532	12359	20190821_JH_WT_Ubi	56.332	28.593	2828300	0	0	2828300	0	0	0	0	0	0			2434	899	2133	7079	7452	7452				1
IGYNPATVPFVPISGWHGDNMLEPSPNMPWFK	2 Oxidation (M)	3629.7112	0.71118191	1160	sp|Q05639|EF1A2_HUMAN	yes	yes	0	0	0	2	0							1			50.991	50.991	3	0.00038847	13296	20190902_JH_MUT_Ubi_3	57.803	35.149	1966200	0	0	0	0	0	0	1966200	0	0			2435	1160	2134	7080	7453	7453			722;723	1
IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	2 Deamidation (NQ)	3568.6319	0.63192853	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	2	0	0	0					1					56.964	56.964	3	0.00034268	13385	20190902_JH_EV_Ubi_3	70.572	52.954	0	0	0	0	0	0	0	0	0	0			2436	1096	2135	7081	7454	7454	357;358			1
IGYSSPLTLSDQSSKIK	GlyGly (K)	1937.0106	0.010571271	248	sp|O60488-2|ACSL4_HUMAN;sp|O60488|ACSL4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		1	1	1	33.574	33.574	3	3.0773E-10	9247	20190902_JH_WT_Ubi_3	141.34	112.56	57858000	2529400	2279800	12717000	2795500	2978700	0	2346700	14237000	17974000			2437	248	2136	7082;7083;7084;7085;7086;7087;7088;7089	7455;7456;7457;7458;7459;7460;7461;7462	7462		223;224		8
IHDIVLVGGSTR	Unmodified	1265.7092	0.70918471	766	sp|P34931|HS71L_HUMAN	yes	yes	0	0	0	0	0			1			1		1	1	29.354	29.354	3	0.0070843	8197	20190902_JH_WT_Ubi_2	83.045	50.791	28629000	0	0	10135000	0	0	2596400	0	8625200	7272400			2438	766	2137	7090;7091;7092;7093	7463;7464;7465;7466	7465				4
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	0	0	1	1	1		1	1	1	1	1	42.289	42.289	3	1.5004E-07	11930	20190902_JH_MUT_Ubi_2	125.73	56.755	270430000	7676000	16258000	82157000	0	8301700	34558000	17013000	62496000	41969000			2439	1097;1098;1515;1858	2138	7094;7095;7096;7097;7098;7099;7100;7101	7467;7468;7469;7470;7471;7472;7473;7474	7470				8
IHFVPGWDCHGLPIEIK	Unmodified	2017.0244	0.024387617	2027	sp|Q9NSE4|SYIM_HUMAN	yes	yes	0	0	0	0	0			1					1		42.303	42.303	3;4	0.016603	12613	20190902_JH_WT_Ubi_2	50.024	30.204	6368100	0	0	5070800	0	0	0	0	1297300	0			2440	2027	2139	7102;7103	7475;7476	7476				2
IHILQKHGENVPK	2 GlyGly (K);Deamidation (NQ)	1740.9271	0.92711641	1661	sp|Q8NI51-11|CTCFL_HUMAN;sp|Q8NI51-6|CTCFL_HUMAN;sp|Q8NI51-5|CTCFL_HUMAN;sp|Q8NI51-10|CTCFL_HUMAN;sp|Q8NI51-2|CTCFL_HUMAN;sp|Q8NI51|CTCFL_HUMAN;sp|Q8NI51-3|CTCFL_HUMAN;sp|Q8NI51-7|CTCFL_HUMAN	yes	no	0	1	2	0	1							1			5.5881	5.5881	3	0.037173	1308	20190902_JH_MUT_Ubi_3	45.915	17.589	0	0	0	0	0	0	0	0	0	0			2441	1661	2140	7104	7477	7477	541			1
IHKTSLHSNAAITMIYLGK	Oxidation (M);2 GlyGly (K)	2341.2212	0.22124952	1434	sp|Q5RHP9-3|ERIC3_HUMAN;sp|Q5RHP9|ERIC3_HUMAN	yes	no	0	0	2	1	1			1							49.209	49.209	3	0.016372	13716	20190821_JH_WT_Ubi	57.499	6.6719	3074800	0	0	3074800	0	0	0	0	0	0			2442	1434	2141	7105	7478	7478		1453;1454	880	1
IHQIEYAMEAVKQGSATVGLK	GlyGly (K)	2386.2315	0.23147986	681	sp|P25786|PSA1_HUMAN;sp|P25786-2|PSA1_HUMAN	yes	no	0	0	1	0	1		1								39.16	39.16	3	0.0027529	9145	20190821_JH_MUT_Ubi	66.76	33.765	672710	0	672710	0	0	0	0	0	0	0			2443	681	2142	7106	7479	7479		665		1
IHVSDQELQSANASVDDSR	Unmodified	2069.9614	0.96138925	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	0	0	1									28.938	28.938	3	6.2445E-05	6043	20190821_JH_EV_Ubi	99.273	47.545	1853900	1853900	0	0	0	0	0	0	0	0			2444	651	2143	7107	7480	7480				1
IHVYGYSMAYGPAQHAISTEK	Oxidation (M)	2338.1052	0.10521671	2019	sp|Q9NRX4|PHP14_HUMAN	yes	yes	0	0	0	1	0			1							30.225	30.225	3	0.01325	6376	20190821_JH_WT_Ubi	51.566	16.845	1411300	0	0	1411300	0	0	0	0	0	0			2445	2019	2144	7108	7481	7481			1087	1
IIAFVGSPVEDNEKDLVK	GlyGly (K)	2086.0946	0.094635252	971	sp|P55036|PSMD4_HUMAN;sp|P55036-2|PSMD4_HUMAN	yes	no	0	0	1	0	1		1				1	1			38.651	38.651	3	0.0045181	10569	20190902_JH_MUT_Ubi_2	69.878	20.284	11115000	0	2523100	0	0	0	3970100	4621900	0	0			2446	971	2145	7109;7110;7111	7482;7483;7484	7483		952;953		3
IIALGPTGAQFLSPVIVEIPHFASHGR	Unmodified	2826.5545	0.55446898	584	sp|P16157-2|ANK1_HUMAN;sp|P16157-8|ANK1_HUMAN;sp|P16157-12|ANK1_HUMAN;sp|P16157-21|ANK1_HUMAN;sp|P16157|ANK1_HUMAN;sp|P16157-3|ANK1_HUMAN;sp|P16157-16|ANK1_HUMAN;sp|P16157-5|ANK1_HUMAN;sp|P16157-15|ANK1_HUMAN;sp|P16157-11|ANK1_HUMAN;sp|P16157-10|ANK1_HUMAN;sp|P16157-13|ANK1_HUMAN;sp|P16157-4|ANK1_HUMAN;sp|P16157-7|ANK1_HUMAN;sp|P16157-6|ANK1_HUMAN;sp|P16157-9|ANK1_HUMAN;sp|P16157-14|ANK1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1		1	50.128	50.128	4	7.7316E-05	13385	20190821_JH_MUT_Ubi	75.054	60.004	55110000	0	26884000	8069500	0	0	10480000	6560100	0	3116000			2447	584	2146	7112;7113;7114;7115;7116	7485;7486;7487;7488;7489	7485				5
IIAVSFPAGCSEESYLHNLQEVTR	Unmodified	2719.3276	0.32756509	1463	sp|Q68CZ2-2|TENS3_HUMAN;sp|Q68CZ2|TENS3_HUMAN;sp|Q68CZ2-4|TENS3_HUMAN;sp|Q68CZ2-3|TENS3_HUMAN	yes	no	0	0	0	0	0	1									45.693	45.693	3	0.031906	12317	20190821_JH_EV_Ubi	43.164	15.444	0	0	0	0	0	0	0	0	0	0			2448	1463	2147	7117	7490	7490				1
IIENAENEYQTAISENYQTMSDTTFK	Oxidation (M)	3055.3604	0.36044094	941	sp|P52907|CAZA1_HUMAN	yes	yes	0	0	0	1	0			1					1		40.585	40.585	3	2.2553E-12	12095	20190902_JH_WT_Ubi_2	114.85	91.797	2568000	0	0	1297300	0	0	0	0	1270700	0			2449	941	2148	7118;7119	7491;7492	7492			590	2
IIGAVDQIQLTQAQLEER	Unmodified	2024.0902	0.090218576	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN	yes	no	0	0	0	0	0			1					1	1	43.24	43.24	3	1.9281E-26	13003	20190902_JH_WT_Ubi_2	171.78	127.65	28902000	0	0	12384000	0	0	0	0	6802200	9715900			2450	1476	2149	7120;7121;7122	7493;7494;7495	7494				3
IIGLDQVAGMSETALPGAFK	Unmodified	2017.0554	0.055412974	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0			1							51.755	51.755	3	1.4299E-05	14603	20190821_JH_WT_Ubi	105.99	62.196	2137900	0	0	2137900	0	0	0	0	0	0			2451	776	2150	7123	7496	7496				1
IIGLDQVAGMSETALPGAFK	Oxidation (M)	2033.0503	0.050327596	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	1	0								1	1	47.425	47.425	3	0.0085797	13879	20190902_JH_WT_Ubi_3	58.564	25.299	4055500	0	0	0	0	0	0	0	2141900	1913600			2452	776	2150	7124;7125	7497;7498	7498			489	2
IIGVINEHKKQNNDK	GlyGly (K);2 Deamidation (NQ)	1864.9643	0.96428978	1531	sp|Q7Z478|DHX29_HUMAN	yes	yes	0	2	1	0	2								1		55.785	55.785	3	0.037047	16473	20190902_JH_WT_Ubi_2	45.115	13.887	3080000	0	0	0	0	0	0	0	3080000	0			2453	1531	2151	7126	7499	7499	486;487			0
IINEPTAAAIAYGLDK	Unmodified	1658.8879	0.88793694	519;517;766	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN;sp|P54652|HSP72_HUMAN;sp|P11021|BIP_HUMAN;sp|P34931|HS71L_HUMAN	no	no	0	0	0	0	0			1						1	42.146	42.146	3	0.0060361	12217	20190902_JH_WT_Ubi_3	68.978	42.035	7542200	0	0	3873200	0	0	0	0	0	3669000			2454	519;517;766	2152	7127;7128	7500;7501	7501				1
IINEPTAAAIAYGLDKK	GlyGly (K)	1901.0258	0.025827405	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN;sp|P54652|HSP72_HUMAN	yes	no	0	0	1	0	1						1		1	1	37.113	37.113	3	8.1137E-05	10022	20190902_JH_MUT_Ubi_2	109.67	76.052	26287000	0	0	0	0	0	9847800	0	9209800	7228900			2455	519	2153	7129;7130;7131	7502;7503;7504	7502		515;516		3
IINLDNESQTTSSSNNEKPGEQEK	GlyGly (K)	2775.2795	0.2794885	1664	sp|Q8TAF3-2|WDR48_HUMAN;sp|Q8TAF3-5|WDR48_HUMAN;sp|Q8TAF3-4|WDR48_HUMAN;sp|Q8TAF3-3|WDR48_HUMAN;sp|Q8TAF3|WDR48_HUMAN	yes	no	0	0	1	0	1		1			1					26.329	26.329	3	0.0011357	5703	20190902_JH_EV_Ubi_3	69.03	41.488	1648800	0	597260	0	0	1051600	0	0	0	0			2456	1664	2154	7132;7133	7505;7506	7505		1662;1663		2
IIPAIATTTAAVVGLVCLELYK	Unmodified	2315.3174	0.31744132	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	0	0		1	1							57.753	57.753	3	0.0012756	16331	20190821_JH_WT_Ubi	69.07	46.634	3908000	0	2539800	1368200	0	0	0	0	0	0			2457	651	2155	7134;7135	7507;7508	7508				2
IIPAIATTTATVSGLVALEMIK	Oxidation (M)	2228.2702	0.27015678	69	sp|A0AVT1-2|UBA6_HUMAN;sp|A0AVT1|UBA6_HUMAN	yes	no	0	0	0	1	0	1									54.437	54.437	3	0.019547	14539	20190821_JH_EV_Ubi	47.155	22.748	616710	616710	0	0	0	0	0	0	0	0			2458	69	2156	7136	7509	7509			40	1
IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK	Unmodified	4054.0245	0.024513361	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN	yes	no	0	0	0	0	0			1							51.633	51.633	3	0.0012934	14544	20190821_JH_WT_Ubi	48.224	28.321	4186900	0	0	4186900	0	0	0	0	0	0			2459	1033	2157	7137	7510	7510				1
IIQLGLTFTNEK	Deamidation (NQ)	1376.7551	0.75513185	2113	sp|Q9UFF9-3|CNOT8_HUMAN;sp|Q9UFF9|CNOT8_HUMAN	yes	no	0	1	0	0	0			1							30.066	30.066	3	0.023322	6288	20190821_JH_WT_Ubi	67.214	26.625	1227300	0	0	1227300	0	0	0	0	0	0			2460	2113	2158	7138	7511	7511	670			0
IIQLLDDYPKCFIVGADNVGSK	GlyGly (K)	2578.3101	0.31012411	428	sp|P05388-2|RLA0_HUMAN;sp|P05388|RLA0_HUMAN;sp|Q8NHW5|RLA0L_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		46.72	46.72	3	2.0313E-11	12206	20190821_JH_MUT_Ubi	128.4	66.753	39919000	4448500	6803700	14820000	958580	1060200	3576000	3134400	5117900	0			2461	428	2159	7139;7140;7141;7142;7143;7144;7145;7146	7512;7513;7514;7515;7516;7517;7518;7519;7520	7516		408		9
IISANGCKVDNSSLTGESEPQTR	GlyGly (K);Deamidation (NQ)	2577.1977	0.19767313	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	1	1	0	1			1	1	1	1	1	1	1	29.606	29.606	3	3.8551E-21	8347	20190902_JH_WT_Ubi_2	155.11	108.62	19852000	0	0	3365300	3647000	2397900	859290	4753600	4828500	0			2462	418	2160	7147;7148;7149;7150;7151;7152;7153	7521;7522;7523;7524;7525;7526;7527;7528	7527	145;146	395		8
IISLDAWRVDINKNK	2 GlyGly (K)	2012.0803	0.080322592	1597	sp|Q8IZH2-2|XRN1_HUMAN;sp|Q8IZH2|XRN1_HUMAN	yes	no	0	0	2	0	2								1		34.852	34.852	3	0.017187	10111	20190902_JH_WT_Ubi_2	76.24	32.442	7789700	0	0	0	0	0	0	0	7789700	0			2463	1597	2161	7154	7529	7529		1593;1594		0
IISNASCTTNCLAPLAK	Deamidation (NQ)	1833.8965	0.89646949	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	1	0	0	0			1					1		38.696	38.696	2	1.904E-14	8580	20190821_JH_WT_Ubi	152	105.41	10539000	0	0	0	0	0	0	0	10539000	0			2464	407	2162	7155;7156	7530;7531	7530	141;142			1
IISNASCTTNCLAPLAK	2 Deamidation (NQ)	1834.8805	0.88048508	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	2	0	0	0								1	1	38.768	38.768	2	0.00033059	11483	20190902_JH_WT_Ubi_2	98.943	45.376	4431000	0	0	0	0	0	0	0	2384900	2046100			2465	407	2162	7157;7158	7532;7533	7532	141;142			1
IISPKNNPPTIVQDK	GlyGly (K)	1776.9734	0.9733979	1509	sp|Q6ZVM7-3|TM1L2_HUMAN;sp|Q6ZVM7-5|TM1L2_HUMAN;sp|Q6ZVM7|TM1L2_HUMAN	yes	no	0	0	1	0	1		1								28.241	28.241	3	0.02133	5204	20190821_JH_MUT_Ubi	59.709	18.308	5569600	0	5569600	0	0	0	0	0	0	0			2466	1509	2163	7159	7534	7534		1509		1
IITHPNFNGNTLDNDIMLIK	Oxidation (M)	2298.1678	0.16781697	1	CON__P00761	yes	yes	0	0	0	1	0			1					1	1	41.066	41.066	3	8.1476E-07	10355	20190821_JH_WT_Ubi	118.05	63.073	30427000	0	0	21012000	0	0	0	0	9414800	0		+	2467	1	2164	7160;7161;7162	7535;7536;7537	7535			1	3
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Oxidation (M)	3324.7136	0.71362475	1	CON__P00761	yes	yes	0	0	0	1	1	1								1	44.073	44.073	4	0.00075734	11837	20190821_JH_EV_Ubi	56.172	37.645	5211400	3421000	0	0	0	0	0	0	0	1790400		+	2468	1	2165	7163;7164	7538;7539	7538			1	2
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Unmodified	3308.7187	0.71871013	1	CON__P00761	yes	yes	0	0	0	0	1	1									45.918	45.918	4	0.0012756	12408	20190821_JH_EV_Ubi	55.691	25.756	3039800	3039800	0	0	0	0	0	0	0	0		+	2469	1	2165	7165	7540	7540				1
IITITGTQDQIQNAQYLLQNSVK	Deamidation (NQ)	2589.365	0.36499645	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	1	0	0	0			1						1	47.003	47.003	3	4.9047E-30	12892	20190821_JH_WT_Ubi	169.77	132.21	7006300	0	0	5353400	0	0	0	0	0	1652800			2470	1033	2166	7166;7167	7541;7542	7541	336			2
IITITGTQDQIQNAQYLLQNSVK	Unmodified	2588.381	0.38098087	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	0	0	0	0			1						1	48.568	48.568	3	4.4172E-16	13500	20190821_JH_WT_Ubi	136.46	103.44	22264000	0	0	16176000	0	0	0	0	0	6087700			2471	1033	2166	7168;7169	7543;7544	7543				2
IIVENLFYPVTLDVLHQIFSK	Unmodified	2487.3777	0.37773339	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0			1					1		57.338	57.338	3	5.6395E-06	16257	20190821_JH_WT_Ubi	94.856	46.542	7686800	0	0	4079400	0	0	0	0	3607300	0			2472	690	2167	7170;7171	7545;7546	7545				2
IKDPDASKPEDWDER	Unmodified	1799.8326	0.83260691	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	2			1							24.716	24.716	3	0.0034183	4765	20190821_JH_WT_Ubi	85.976	52.225	0	0	0	0	0	0	0	0	0	0			2473	702	2168	7172	7547	7547				1
IKELASCNPVVLEESK	GlyGly (K)	1928.9877	0.98772734	2198	sp|Q9Y232-3|CDYL_HUMAN;sp|Q9Y232-4|CDYL_HUMAN;sp|Q9Y232-2|CDYL_HUMAN;sp|Q9Y232|CDYL_HUMAN	yes	no	0	0	1	0	1	1									32.262	32.262	3	0.02776	7331	20190821_JH_EV_Ubi	52.372	9.0019	610600	610600	0	0	0	0	0	0	0	0			2474	2198	2169	7173	7548	7548		2053		1
IKGDVPSVGLEGPDVDLQGPEAK	GlyGly (K)	2433.2387	0.23873331	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1			38.239	38.239	3	9.3682E-10	9633	20190902_JH_MUT_Ubi_3	122.3	79.089	56502000	10065000	6932200	5434200	5011900	8838400	9487800	10732000	0	0			2475	1190	2170	7174;7175;7176;7177;7178;7179;7180	7549;7550;7551;7552;7553;7554;7555	7554		1214		7
IKKNLPVTGPQAPTIK	2 GlyGly (K)	1932.1156	0.11564547	917	sp|P51170|SCNNG_HUMAN	yes	yes	0	0	2	0	2	1									27.634	27.634	3	0.037253	5524	20190821_JH_EV_Ubi	90.476	66.648	1367400	1367400	0	0	0	0	0	0	0	0			2476	917	2171	7181	7556	7556		882		1
IKQCLEDSDAGASNEYDSSPAAWNK	GlyGly (K)	2869.2461	0.24607988	852	sp|P46063|RECQ1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1	1	31.718	31.718	3	3.9438E-26	8636	20190902_JH_WT_Ubi_3	152.57	131.51	31896000	2315400	3087400	6469100	0	1040200	2634500	5201100	4572500	6575800			2477	852	2172	7182;7183;7184;7185;7186;7187;7188;7189	7557;7558;7559;7560;7561;7562;7563;7564	7564		829		8
IKQHLENDPGSNEDTDIPK	GlyGly (K)	2263.0717	0.071667978	201	sp|O43396|TXNL1_HUMAN	yes	yes	0	0	1	0	1						1	1			23.323	23.323	3	0.004812	5217	20190902_JH_MUT_Ubi_2	66.809	20.509	497920	0	0	0	0	0	497920	0	0	0			2478	201	2173	7190;7191	7565;7566	7565		181		2
IKSTNPGISIGDVAK	GlyGly (K)	1612.8784	0.87843489	179	sp|O15347|HMGB3_HUMAN	yes	yes	0	0	1	0	1						1				29.276	29.276	3	0.0018667	7093	20190902_JH_MUT_Ubi_2	90.229	38.128	3032600	0	0	0	0	0	3032600	0	0	0			2479	179	2174	7192	7567	7567		151		1
IKVAEDEAEAAAAAK	GlyGly (K)	1599.8104	0.8104149	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	0	1	1	1	1	2	1	1	1	1	1	26.09	26.09	2;3	1.1028E-20	5648	20190902_JH_MUT_Ubi_3	171.36	109.2	1386100000	110200000	107800000	139680000	192810000	180720000	135660000	91881000	269630000	157660000			2480	462;463	2175	7193;7194;7195;7196;7197;7198;7199;7200;7201;7202	7568;7569;7570;7571;7572;7573;7574;7575;7576;7577	7574		469;470		9
IKVAEDEAEAAAAAKFTGLSK	2 GlyGly (K)	2347.202	0.20195387	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	2	0	2	1									36.405	36.405	4	0.02682	8884	20190821_JH_EV_Ubi	59.281	9.8183	3004300	3004300	0	0	0	0	0	0	0	0			2481	462;463	2176	7203	7578	7578		469;470;471		1
IKWGDAGAEYVVESTGVFTTMEK	Oxidation (M);GlyGly (K)	2647.2476	0.24758343	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	1	1	1		1								44.503	44.503	3	0.033256	11263	20190821_JH_MUT_Ubi	43.956	6.5255	968920	0	968920	0	0	0	0	0	0	0			2482	407	2177	7204	7579	7579			197	1
ILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR	Unmodified	3255.7324	0.73238636	1972	sp|Q9H936|GHC1_HUMAN	yes	yes	0	0	0	0	1		1	1							35.989	35.989	3	3.2358E-12	8355	20190821_JH_WT_Ubi	106.36	93.196	3518000	0	0	3518000	0	0	0	0	0	0			2483	1972	2178	7205;7206	7580;7581	7581				2
ILAIGLINEALDEGDAQK	Unmodified	1882.0048	0.004757612	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	51.649	51.649	3	4.3429E-54	14525	20190821_JH_WT_Ubi	215.15	160.75	5722900	0	0	2400000	0	0	0	0	947850	2375100			2484	863	2179	7207;7208;7209	7582;7583;7584	7582				3
ILATGANVILTTGGIDDMCLK	Oxidation (M)	2191.1228	0.12284061	607	sp|P17987|TCPA_HUMAN	yes	yes	0	0	0	1	0		1								45.556	45.556	2	0.0013258	11716	20190821_JH_MUT_Ubi	79.885	35.46	740720	0	740720	0	0	0	0	0	0	0			2485	607	2180	7210	7585	7585			373	1
ILATPPQEDAPSVDIANIR	Unmodified	2019.0637	0.063669474	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	0				1	1			1	1	42.133	42.133	2;3	2.8077E-07	12690	20190902_JH_WT_Ubi_2	122.14	88.832	7021600	0	0	0	538580	1348500	0	0	2750900	2383600			2486	715	2181	7211;7212;7213;7214	7586;7587;7588;7589	7588				3
ILAVTDFEPTQAR	Unmodified	1459.7671	0.76709352	1478	sp|Q6P179-3|ERAP2_HUMAN;sp|Q6P179|ERAP2_HUMAN;sp|Q6P179-4|ERAP2_HUMAN;sp|Q6P179-2|ERAP2_HUMAN	yes	no	0	0	0	0	0			1							36.412	36.412	3	0.037167	8604	20190821_JH_WT_Ubi	47.039	14.433	30033000	0	0	30033000	0	0	0	0	0	0			2487	1478	2182	7215	7590	7590				1
ILCEAPVESVVQVSGTVISR	Unmodified	2142.1355	0.13545421	1484	sp|Q6PI48|SYDM_HUMAN	yes	yes	0	0	0	0	0			1							46.464	46.464	3	9.7872E-05	12622	20190821_JH_WT_Ubi	88.781	31.256	2060900	0	0	2060900	0	0	0	0	0	0			2488	1484	2183	7216	7591	7591				1
ILCQDNPSHNVFCSPVSISSALAMVLLGAK	Oxidation (M)	3243.609	0.60902502	906	sp|P50453|SPB9_HUMAN	yes	yes	0	0	0	1	0			1					1		55.005	55.005	3	1.5878E-05	15748	20190821_JH_WT_Ubi	81.799	56.642	6987900	0	0	5615200	0	0	0	0	1372700	0			2489	906	2184	7217;7218	7592;7593	7592			569	2
ILDLGITGPEGHVLSRPEEVEAEAVNR	Unmodified	2899.5039	0.50394955	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	0	1									1	40.394	40.394	4	0.028321	11612	20190902_JH_WT_Ubi_3	38.175	11.971	6407200	0	0	0	0	0	0	0	0	6407200			2490	1376	2185	7219	7594	7594				1
ILDSVGIEADDDR	Unmodified	1416.6733	0.67325272	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	0	0	0			1							35.533	35.533	2	0.01144	8182	20190821_JH_WT_Ubi	77.674	41.766	11251000	0	0	11251000	0	0	0	0	0	0			2491	427	2186	7220	7595	7595				1
ILDSVGIEADDDRLNK	Unmodified	1771.8952	0.89520716	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	0	0	1									1	33.688	33.688	3	0.031997	9358	20190902_JH_WT_Ubi_3	70.373	33.735	9601800	0	0	0	0	0	0	0	0	9601800			2492	427	2187	7221	7596	7596				1
ILELIESGKK	GlyGly (K)	1242.7184	0.71835242	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	0	1						1	1	1	1	30.477	30.477	3	0.016319	8635	20190902_JH_WT_Ubi_2	86.882	22.674	15905000	0	0	0	0	0	5053300	4470100	3053800	3327600			2493	865	2188	7222;7223;7224;7225	7597;7598;7599;7600	7599		841;842		4
ILEQNKNQK	GlyGly (K)	1227.6571	0.65714914	299	sp|O75674-2|TM1L1_HUMAN;sp|O75674-3|TM1L1_HUMAN;sp|O75674|TM1L1_HUMAN	yes	no	0	0	1	0	1		1				1	1			11.221	11.221	3	0.007031	1966	20190821_JH_MUT_Ubi	99.136	21.023	2730500	0	617990	0	0	0	1214300	898210	0	0			2494	299	2189	7226;7227;7228	7601;7602;7603	7601		284;285		3
ILFVGESVQMFENQNVNLTR	Oxidation (M);Deamidation (NQ)	2354.1576	0.15764621	2116	sp|Q9UGJ1-2|GCP4_HUMAN;sp|Q9UGJ1|GCP4_HUMAN	yes	no	0	1	0	1	0		1								46.718	46.718	3	0.032015	12092	20190821_JH_MUT_Ubi	46.159	11.884	0	0	0	0	0	0	0	0	0	0			2495	2116	2190	7229	7604	7604	671		1119	1
ILGADTSVDLEETGR	Unmodified	1574.7788	0.77878042	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	0	0	0	0	1									37.552	37.552	2	0.0030972	9252	20190821_JH_EV_Ubi	103.46	46.313	0	0	0	0	0	0	0	0	0	0			2496	680	2191	7230	7605	7605				1
ILGATIENSR	Deamidation (NQ)	1073.5717	0.57168818	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	0	0	0			1							30.69	30.69	2	0.014354	6511	20190821_JH_WT_Ubi	85.29	16.908	1516700	0	0	1516700	0	0	0	0	0	0		+	2497	7;477	2192	7231	7606	7606	4			0
ILGATIENSR	Unmodified	1072.5877	0.58767259	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0								1		28.945	28.945	2	0.0095624	7951	20190902_JH_WT_Ubi_2	106.68	15.906	46195000	0	0	0	0	0	0	0	46195000	0		+	2498	7;477	2192	7232	7607	7607				0
ILGGSVLHLVLALR	Unmodified	1459.9239	0.92386894	1369	sp|Q15843|NEDD8_HUMAN	yes	yes	0	0	0	0	0			1							49.766	49.766	3	0.019957	13897	20190821_JH_WT_Ubi	58.04	44.922	2947500	0	0	2947500	0	0	0	0	0	0			2499	1369	2193	7233	7608	7608				1
ILGGVISAISEAAAQYNPEPPPPR	Unmodified	2446.2856	0.28562392	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	52.23	52.23	3	5.075E-70	14703	20190902_JH_MUT_Ubi_2	218.25	184.54	57885000	12014000	9210900	10660000	781180	3729700	4661100	4461000	5547200	6820700			2500	410	2194	7234;7235;7236;7237;7238;7239;7240;7241;7242	7609;7610;7611;7612;7613;7614;7615;7616;7617;7618	7614				10
ILGGVISAISEAAAQYNPEPPPPR	Deamidation (NQ)	2447.2696	0.2696395	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	1	0	0	0						1				52.71	52.71	3	1.083E-12	14827	20190902_JH_MUT_Ubi_2	134.58	106.68	385500	0	0	0	0	0	385500	0	0	0			2501	410	2194	7243	7619	7619	821			1
ILGSGISSSSVLHGMVFK	Oxidation (M)	1833.9659	0.96586969	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	0	1	0		1	1	1		1	1	1		37.016	37.016	3	9.8528E-05	8611	20190821_JH_MUT_Ubi	102.64	68.458	128970000	0	10046000	46245000	4083000	0	23989000	23916000	20692000	0			2502	912	2195	7244;7245;7246;7247;7248;7249	7620;7621;7622;7623;7624;7625	7621			574	6
ILGSGISSSSVLHGMVFK	Unmodified	1817.971	0.97095506	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			40.986	40.986	3	0.0012285	10077	20190821_JH_MUT_Ubi	75.998	37.633	43625000	0	8938000	19721000	0	0	10441000	4525100	0	0			2503	912	2195	7250;7251;7252;7253	7626;7627;7628;7629	7626				4
ILHVDNHIGISIAGLTADAR	Unmodified	2085.1331	0.13308644	681	sp|P25786|PSA1_HUMAN;sp|P25786-2|PSA1_HUMAN	yes	no	0	0	0	0	0	1	1	2			1				40.551	40.551	3;4	0.0022338	10154	20190821_JH_WT_Ubi	66.606	27.443	25050000	4848200	7924600	10671000	0	0	1605800	0	0	0			2504	681	2196	7254;7255;7256;7257;7258	7630;7631;7632;7633;7634;7635	7635				6
ILIHSVSLSSSPNIMLLHR	Oxidation (M)	2132.1776	0.1775938	1660	sp|Q8NI36|WDR36_HUMAN	yes	yes	0	0	0	1	0			1					1	1	37.954	37.954	4	0.00076978	9171	20190821_JH_WT_Ubi	77.746	48.06	12819000	0	0	4591000	0	0	0	0	3174500	5053700			2505	1660	2197	7259;7260;7261	7636;7637;7638	7636			957	3
ILIRPMYSNPPLNGAR	Oxidation (M)	1826.9825	0.9825228	381	sp|P00505-2|AATM_HUMAN;sp|P00505|AATM_HUMAN	yes	no	0	0	0	1	1	1				1					32.257	32.257	3	0.0031273	7594	20190902_JH_EV_Ubi_3	92.65	51.072	4741500	2263600	0	0	0	2477900	0	0	0	0			2506	381	2198	7262;7263	7639;7640	7640			178	2
ILIVGGGVAGLASAGAAK	Unmodified	1523.9035	0.90352742	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	0	0								1	1	42.078	42.078	2	0.00069206	12128	20190902_JH_WT_Ubi_3	92.295	66.25	1831300	0	0	0	0	0	0	0	1028400	802900			2507	1236	2199	7264;7265	7641;7642	7642				0
ILKMEKENQR	Oxidation (M)	1303.6918	0.69182009	1408	sp|Q3V6T2-5|GRDN_HUMAN;sp|Q3V6T2-4|GRDN_HUMAN;sp|Q3V6T2-2|GRDN_HUMAN;sp|Q3V6T2-3|GRDN_HUMAN;sp|Q3V6T2|GRDN_HUMAN	yes	no	0	0	0	1	2							1			25.011	25.011	3	0.032447	5443	20190902_JH_MUT_Ubi_3	78.655	12.088	1772000	0	0	0	0	0	0	1772000	0	0			2508	1408	2200	7266	7643	7643			863	0
ILKSNNPAITTAECLK	GlyGly (K)	1885.9931	0.99314707	1641	sp|Q8ND90|PNMA1_HUMAN	yes	yes	0	0	1	0	1		1								30.385	30.385	3	0.02277	6003	20190821_JH_MUT_Ubi	55.975	28.517	820220	0	820220	0	0	0	0	0	0	0			2509	1641	2201	7267	7644	7644		1641;1642		1
ILSISADIETIGEILK	Unmodified	1713.9764	0.9764176	1033	sp|P61978-2|HNRPK_HUMAN;sp|P61978|HNRPK_HUMAN;sp|P61978-3|HNRPK_HUMAN	yes	no	0	0	0	0	0		1								55.079	55.079	2	0.0018732	14693	20190821_JH_MUT_Ubi	86.803	56.664	4197900	0	4197900	0	0	0	0	0	0	0			2510	1033	2202	7268	7645	7645				1
ILTATVDNANILLQIDNAR	Unmodified	2067.1324	0.13241774	15	CON__Q04695;sp|Q04695|K1C17_HUMAN	yes	no	0	0	0	0	0	1									48.829	48.829	3	3.7173E-39	13292	20190821_JH_EV_Ubi	184.92	138.6	1485400	1485400	0	0	0	0	0	0	0	0		+	2511	15	2203	7269	7646;7647	7647				2
ILTKLLEVSDDPQVLAVAAHDVGEYVR	GlyGly (K)	3063.6241	0.62406469	2138	sp|Q9UI12-2|VATH_HUMAN;sp|Q9UI12|VATH_HUMAN	yes	no	0	0	1	0	1			1							49.962	49.962	4	0.017396	13978	20190821_JH_WT_Ubi	40.396	17.187	3858200	0	0	3858200	0	0	0	0	0	0			2512	2138	2204	7270	7648	7648		2008		1
ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR	Unmodified	3751.9057	0.90571885	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	0	1	1	1			1		1	1	46.582	46.582	4	1.6161E-10	12695	20190821_JH_EV_Ubi	97.771	76	26871000	2223700	2822400	15953000	0	0	858240	0	2916400	2096700			2513	715	2205	7271;7272;7273;7274;7275;7276	7649;7650;7651;7652;7653;7654	7649				6
ILVQQTLNILQQLAVAMGPNIK	Oxidation (M)	2420.3825	0.38250119	1266	sp|Q14008-2|CKAP5_HUMAN;sp|Q14008|CKAP5_HUMAN;sp|Q14008-3|CKAP5_HUMAN	yes	no	0	0	0	1	0			1							54.966	54.966	3	0.00035364	15800	20190821_JH_WT_Ubi	76.533	61.189	2331700	0	0	2331700	0	0	0	0	0	0			2514	1266	2206	7277	7655	7655			788	1
IMDPNIVGSEHYDVAR	Oxidation (M)	1830.857	0.85704752	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	1	0			1						1	31.237	31.237	3	0.0096084	6744	20190821_JH_WT_Ubi	65.467	24.066	7603200	0	0	3427700	0	0	0	0	0	4175600			2515	433	2207	7278;7279	7656;7657	7656			229	2
IMESFKNMVPQQALVIR	2 Oxidation (M);GlyGly (K)	2149.1024	0.10237994	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|Q13733|AT1A4_HUMAN	yes	no	0	0	1	2	1				1		1	1	1	1	35.353	35.353	3	0.0002528	8754	20190902_JH_MUT_Ubi_3	97.2	37.939	13221000	0	0	0	887290	0	3423900	3702300	2495200	2711900			2516	418	2208	7280;7281;7282;7283;7284	7658;7659;7660;7661;7662	7660		396	212;213	4
IMNSDENKMQEEEEVVDK	2 Oxidation (M);GlyGly (K)	2311.9784	0.9784208	674	sp|P24928|RPB1_HUMAN	yes	yes	0	0	1	2	1						1	1			23.387	23.387	3	0.0032434	5242	20190902_JH_MUT_Ubi_2	67.685	42.631	1228000	0	0	0	0	0	798770	429210	0	0			2517	674	2209	7285;7286	7663;7664	7663		656	415;416	2
IMQSSSEVGYDAMAGDFVNMVEK	3 Oxidation (M)	2555.0866	0.08659104	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	3	0								1	1	38.733	38.733	3	2.2082E-07	10993	20190902_JH_WT_Ubi_3	102.16	69.855	5958500	0	0	0	0	0	0	0	2715100	3243500			2518	515	2210	7287;7288	7665;7666	7666			300;301;302	2
IMSLVDPNHSGLVTFQAFIDFMSR	2 Oxidation (M)	2756.3302	0.33020763	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	2	0		1	1					1		53.264	53.264	3	8.8945E-17	15048	20190821_JH_WT_Ubi	136.59	108.39	18644000	0	3716100	12697000	0	0	0	0	2231000	0			2519	214	2211	7289;7290;7291	7667;7668;7669	7668			86;87	3
IMTEKELLAVACEQFLGK	Oxidation (M);GlyGly (K)	2209.1123	0.11227593	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	1	1	1	1			1	1	1				45.376	45.376	3	9.1582E-05	12306	20190821_JH_EV_Ubi	105.9	70.568	9030300	4506300	0	0	1348900	1580200	1594900	0	0	0			2520	1288	2212	7292;7293;7294;7295	7670;7671;7672;7673	7670		1349	802	4
IMTEKELLAVACEQFLGK	GlyGly (K)	2193.1174	0.1173613	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	1	0	1	1					1				48.587	48.587	3	9.3862E-06	14000	20190902_JH_MUT_Ubi_2	111.34	48.483	3079300	2169600	0	0	0	0	909760	0	0	0			2521	1288	2212	7296;7297	7674;7675	7675		1349		2
INEAIVAVQAIIADPK	Unmodified	1663.9509	0.95087155	2196	sp|Q9Y224|RTRAF_HUMAN	yes	yes	0	0	0	0	0			1							49.231	49.231	3	0.00063349	13720	20190821_JH_WT_Ubi	94.61	52.785	1828400	0	0	1828400	0	0	0	0	0	0			2522	2196	2213	7298	7676	7676				1
INEELESQYQQSMDSKLSGR	Oxidation (M);GlyGly (K)	2471.1234	0.12344555	113	sp|O00193|SMAP_HUMAN	yes	yes	0	0	1	1	1						1				29.42	29.42	3	0.01169	7129	20190902_JH_MUT_Ubi_2	58.997	26.432	1140900	0	0	0	0	0	1140900	0	0	0			2523	113	2214	7299	7677	7677		100	51	1
INELTGIKESDTGLAPPALWDLAADK	GlyGly (K)	2851.4604	0.4603534	782	sp|P35998|PRS7_HUMAN	yes	yes	0	0	1	0	1			1							48.69	48.69	3	0.0045069	13518	20190821_JH_WT_Ubi	54.141	19.126	1435300	0	0	1435300	0	0	0	0	0	0			2524	782	2215	7300	7678	7678		767		1
INFAVFPSLQGGPHNHAIAAVAVALK	Unmodified	2641.4493	0.44927563	764	sp|P34897-3|GLYM_HUMAN;sp|P34897-2|GLYM_HUMAN;sp|P34897|GLYM_HUMAN	yes	no	0	0	0	0	0		1	1					1		45.129	45.129	4	0.027884	12061	20190821_JH_WT_Ubi	32.481	4.5775	204800000	0	24624000	165320000	0	0	0	0	14856000	0			2525	764	2216	7301;7302;7303	7679;7680;7681	7680				3
INGALNITLNLVKQNLQNHR	3 Deamidation (NQ)	2275.2284	0.22844339	2189	sp|Q9UPW5-2|CBPC1_HUMAN;sp|Q9UPW5|CBPC1_HUMAN;sp|Q9UPW5-3|CBPC1_HUMAN	yes	no	0	3	0	0	1			1							53.82	53.82	3	0.011993	15364	20190821_JH_WT_Ubi	64.52	8.9314	12325000	0	0	12325000	0	0	0	0	0	0			2526	2189	2217	7304	7682	7682	696;697;698;1321			1
INSPNSKVNTLSK	2 GlyGly (K);2 Deamidation (NQ)	1630.8162	0.81622856	818	sp|P40939|ECHA_HUMAN	yes	yes	0	2	2	0	1		1								30.167	30.167	3	0.023528	5932	20190821_JH_MUT_Ubi	55.452	8.1643	1356400	0	1356400	0	0	0	0	0	0	0			2527	818	2218	7305	7683	7683	288;289	791;792		1
IPAGLCATAIDILTTVVR	Unmodified	1883.055	0.055019043	1804	sp|Q96P70|IPO9_HUMAN	yes	yes	0	0	0	0	0		1								56.044	56.044	3	0.024685	14932	20190821_JH_MUT_Ubi	45.618	21.08	2153200	0	2153200	0	0	0	0	0	0	0			2528	1804	2219	7306	7684	7684				1
IPDPEAVKPDDWDEDAPAK	Unmodified	2106.9746	0.9745797	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	0	0	1			1							35.913	35.913	3	0.0049013	8319	20190821_JH_WT_Ubi	77.137	51.772	7789300	0	0	7789300	0	0	0	0	0	0			2529	704	2220	7307	7685	7685				1
IPEDEIWQSEPESVDVPAQPITTTFLER	Unmodified	3225.5718	0.57175434	694	sp|P27338|AOFB_HUMAN	yes	yes	0	0	0	0	0			1							52.929	52.929	3	7.7912E-16	14961	20190821_JH_WT_Ubi	111.33	74.099	4981700	0	0	4981700	0	0	0	0	0	0			2530	694	2221	7308	7686;7687	7686				2
IPEINSSDMSAHVTSPSGR	Oxidation (M)	1999.9269	0.926918	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN	yes	no	0	0	0	1	0									1	27.494	27.494	3	0.011588	7227	20190902_JH_WT_Ubi_3	56.906	32.45	4750200	0	0	0	0	0	0	0	0	4750200			2531	282	2222	7309	7688	7688			123	1
IPGLLSPHPLLQLSYTATDR	Unmodified	2191.2001	0.20010338	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0						1				45.457	45.457	3	2.1391E-09	13229	20190902_JH_MUT_Ubi_2	127.32	83.523	5099600	0	0	0	0	0	5099600	0	0	0			2532	881	2223	7310	7689	7689				1
IPGSAVLIFNVHVIDFHNPADVVEIR	Unmodified	2870.5443	0.54429822	1757	sp|Q96AY3|FKB10_HUMAN;sp|Q96AY3-2|FKB10_HUMAN	yes	no	0	0	0	0	0			1							51.314	51.314	4	0.0049032	14454	20190821_JH_WT_Ubi	49.765	30.043	4488900	0	0	4488900	0	0	0	0	0	0			2533	1757	2224	7311	7690	7690				1
IPIFSAAGLPHNEIAAQICR	Unmodified	2177.1415	0.14154264	569	sp|P21281|VATB2_HUMAN;sp|P15313|VATB1_HUMAN	yes	no	0	0	0	0	0			1						1	42.788	42.788	3	7.4471E-05	11178	20190821_JH_WT_Ubi	92.427	53.079	10553000	0	0	7761500	0	0	0	0	0	2791000			2534	569	2225	7312;7313	7691;7692	7691				2
IPLLSDLTHQISK	Unmodified	1463.8348	0.83477916	1220	sp|Q13162|PRDX4_HUMAN	yes	yes	0	0	0	0	0	1									41.871	41.871	3	0.012487	10877	20190821_JH_EV_Ubi	69.229	36.899	1725100	1725100	0	0	0	0	0	0	0	0			2535	1220	2226	7314	7693	7693				1
IPLNPYLNLHSLLPASNLAGK	Unmodified	2244.263	0.26303798	1586	sp|Q8IY67-2|RAVR1_HUMAN	yes	yes	0	0	0	0	0		1	1				1			48.279	48.279	3	5.5372E-06	13384	20190821_JH_WT_Ubi	94.958	59.746	7398900	0	2522400	3265000	0	0	0	1611500	0	0			2536	1586	2227	7315;7316;7317	7694;7695;7696	7696				3
IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR	Unmodified	3724.8526	0.85256107	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN	yes	no	0	0	0	0	0					1					53.537	53.537	4	0.012206	12796	20190902_JH_EV_Ubi_3	36.698	12.045	353700	0	0	0	0	353700	0	0	0	0			2537	1131	2228	7318	7697	7697				1
IPNIYAIGDVVAGPMLAHK	Oxidation (M)	1994.0659	0.065918081	491	sp|P09622-2|DLDH_HUMAN;sp|P09622-3|DLDH_HUMAN;sp|P09622|DLDH_HUMAN	yes	no	0	0	0	1	0	1			1	1	1	1	1	1	44.159	44.159	3	3.4211E-18	11907	20190821_JH_EV_Ubi	154.39	107.3	23008000	7244900	0	0	3490100	2769600	2441600	1308900	2209900	3543500			2538	491	2229	7319;7320;7321;7322;7323;7324;7325	7698;7699;7700;7701;7702;7703;7704	7698			283	7
IPNIYAIGDVVAGPMLAHK	Unmodified	1978.071	0.071003459	491	sp|P09622-2|DLDH_HUMAN;sp|P09622-3|DLDH_HUMAN;sp|P09622|DLDH_HUMAN	yes	no	0	0	0	0	0	1	1	1							48.562	48.562	3	5.7571E-07	13374	20190821_JH_WT_Ubi	121.03	84.685	6826900	2953500	1037900	2835500	0	0	0	0	0	0			2539	491	2229	7326;7327;7328	7705;7706;7707	7707				3
IPPLNLGPPSFPHHR	Unmodified	1677.9103	0.91034414	247	sp|O60476|MA1A2_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1		35.211	35.211	4	0.0043172	8500	20190902_JH_EV_Ubi_3	73.466	42.468	9615700	1589200	0	1761100	1797200	2562500	0	0	1905600	0			2540	247	2230	7329;7330;7331;7332;7333	7708;7709;7710;7711;7712	7710				5
IPPYHYIHVLDQNSNVSR	Unmodified	2151.0861	0.086136251	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	0	0	1	1	2			1		2	1	32.705	32.705	2;3;4	0.0016428	9318	20190902_JH_WT_Ubi_2	73.296	44.427	139450000	1986100	2660000	54191000	0	0	5512500	0	38106000	36992000			2541	1306	2231	7334;7335;7336;7337;7338;7339;7340;7341	7713;7714;7715;7716;7717;7718;7719;7720	7718				8
IPSAVGYQPTLATDMGTMQER	2 Oxidation (M)	2297.0668	0.066782296	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	2	0								1	1	36.193	36.193	3	1.3857E-08	10171	20190902_JH_WT_Ubi_3	117.23	75.163	11454000	0	0	0	0	0	0	0	6449700	5004500			2542	433	2232	7342;7343	7721;7722	7722			230;231	2
IQALQTACPDLQLSAASVGNCPTKK	GlyGly (K)	2784.3898	0.38984777	1333	sp|Q15154-4|PCM1_HUMAN;sp|Q15154-2|PCM1_HUMAN;sp|Q15154-5|PCM1_HUMAN;sp|Q15154|PCM1_HUMAN	yes	no	0	0	1	0	1		1				1	1			36.648	36.648	3	8.9786E-44	9879	20190902_JH_MUT_Ubi_2	180.03	156.4	10761000	0	4536900	0	0	0	3808700	2415200	0	0			2543	1333	2233	7344;7345;7346	7723;7724;7725	7724		1387;1388		3
IQDKEGIPPDQQR	GlyGly (K)	1636.8169	0.81689726	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1			1				1			21.762	21.762	2;3	0.025964	3979	20190821_JH_WT_Ubi	62.162	20.121	19066000	0	0	16330000	0	0	0	2736500	0	0			2544	1074	2234	7347;7348	7726;7727	7727		1051		1
IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK	2 Oxidation (M)	3364.6894	0.68944341	940	sp|P52815|RM12_HUMAN	yes	yes	0	0	0	2	0									1	49.888	49.888	3	0.00044405	14624	20190902_JH_WT_Ubi_3	51.444	28.884	2332000	0	0	0	0	0	0	0	0	2332000			2545	940	2235	7349	7728	7728			588;589	1
IQEEEAEGISSMLSLNNKQLSQMLK	2 Oxidation (M);GlyGly (K)	2965.4373	0.43725147	1296	sp|Q14573|ITPR3_HUMAN	yes	yes	0	0	1	2	1									1	37.94	37.94	3	0.0021434	10801	20190902_JH_WT_Ubi_3	89.721	59.531	0	0	0	0	0	0	0	0	0	0			2546	1296	2236	7350	7729	7729		1358	809;810	1
IQEIIEQLDVTTSEYEK	Unmodified	2037.0154	0.015381878	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	0			1							44.496	44.496	2	1.2265E-268	11796	20190821_JH_WT_Ubi	358.01	265.76	21480000	0	0	21480000	0	0	0	0	0	0			2547	515	2237	7351	7730	7730				0
IQESYGDVYGICTKLK	GlyGly (K)	1986.9721	0.97207728	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN	yes	no	0	0	1	0	1		1				1				35.203	35.203	3	2.5928E-05	9247	20190902_JH_MUT_Ubi_2	116.78	72.735	5310300	0	1791100	0	0	0	3519200	0	0	0			2548	624	2238	7352;7353	7731;7732	7732		600		2
IQGKTIPTDDNVVCFTR	GlyGly (K)	2077.0262	0.026238111	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	0	1									1	33.605	33.605	3	0.0021873	9338	20190902_JH_WT_Ubi_3	79.514	47.358	3370900	0	0	0	0	0	0	0	0	3370900			2549	865	2239	7354	7733	7733		843		1
IQGMQKFLGLEVTGK	GlyGly (K)	1761.9447	0.94474031	485	sp|P09238|MMP10_HUMAN	yes	yes	0	0	1	0	1			1							35.668	35.668	3	0.020617	8233	20190821_JH_WT_Ubi	60.196	11.076	13847000	0	0	13847000	0	0	0	0	0	0			2550	485	2240	7355	7734	7734		482		1
IQHSITAQDHQPTPDSCIISMVVGQLK	Oxidation (M)	3018.4903	0.4902901	1032	sp|P61970|NTF2_HUMAN	yes	yes	0	0	0	1	0									1	40.192	40.192	4	0.00031843	11553	20190902_JH_WT_Ubi_3	69.525	40.542	3503000	0	0	0	0	0	0	0	0	3503000			2551	1032	2241	7356	7735	7735			639	1
IQIQEKLQQLKR	3 Deamidation (NQ)	1526.8668	0.86680757	403	sp|P04114|APOB_HUMAN	yes	yes	0	3	0	0	2				1	1					30.77	30.77	3	0.0086437	7171	20190902_JH_EV_Ubi_2	78.903	32.84	574040	0	0	0	303920	270120	0	0	0	0			2552	403	2242	7357;7358	7736;7737	7736	817;818;819			0
IQKELADITLDPPPNCSAGPK	GlyGly (K)	2377.1948	0.19476	929	sp|P51965-2|UB2E1_HUMAN;sp|P51965|UB2E1_HUMAN	yes	no	0	0	1	0	1		1					1			35.182	35.182	3	0.0036129	8847	20190902_JH_MUT_Ubi_3	63.436	23.352	510690	0	0	0	0	0	0	510690	0	0			2553	929	2243	7359;7360	7738;7739	7739		896		2
IQPEEKPVEVSPAVTK	GlyGly (K)	1863.9942	0.99419293	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	1					1		1			27.638	27.638	3	0.018817	6272	20190902_JH_MUT_Ubi_3	58.83	27.868	10289000	0	0	0	0	7355400	0	2933100	0	0			2554	1603	2244	7361;7362	7740;7741	7741		1602;1603		2
IQPFQNLTLHPASSSLHYSLQLFEGMK	Oxidation (M)	3101.5644	0.56444132	184	sp|O15382|BCAT2_HUMAN	yes	yes	0	0	0	1	0			1							45.465	45.465	4	0.016045	12233	20190821_JH_WT_Ubi	40.177	15.779	10351000	0	0	10351000	0	0	0	0	0	0			2555	184	2245	7363	7742	7742			78	1
IQQELQTAKK	GlyGly (K);2 Deamidation (NQ)	1301.6827	0.68269519	1904	sp|Q9BY43|CHM4A_HUMAN;sp|Q9BY43-2|CHM4A_HUMAN	yes	no	0	2	1	0	1			1							22.107	22.107	3	0.034192	4065	20190821_JH_WT_Ubi	63.694	14.158	697520	0	0	697520	0	0	0	0	0	0			2556	1904	2246	7364	7743	7743	1233;1234			0
IQTIILKDITSDSENSNFR	GlyGly (K)	2307.1707	0.17065374	678	sp|P25445-6|TNR6_HUMAN;sp|P25445|TNR6_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			39.771	39.771	3	6.0128E-09	9552	20190821_JH_MUT_Ubi	127.59	75.788	16968000	4803400	3661800	0	0	0	5702400	2800200	0	0			2557	678	2247	7365;7366;7367;7368	7744;7745;7746;7747	7745		661		4
IQTKEPLPTLPLGR	GlyGly (K)	1675.9621	0.96210494	204	sp|O43464-4|HTRA2_HUMAN;sp|O43464-3|HTRA2_HUMAN;sp|O43464|HTRA2_HUMAN	yes	no	0	0	1	0	1		1				1	1			36.002	36.002	3	0.010672	8969	20190902_JH_MUT_Ubi_3	72.705	51.972	8451000	0	1823000	0	0	0	3733900	2894100	0	0			2558	204	2248	7369;7370;7371	7748;7749;7750	7750		186		3
IQVLQQQADDAEER	Unmodified	1641.7958	0.79582747	439	sp|P06753-4|TPM3_HUMAN;sp|P06753-3|TPM3_HUMAN;sp|P06753-6|TPM3_HUMAN;sp|P06753-5|TPM3_HUMAN;sp|P06753-2|TPM3_HUMAN	yes	no	0	0	0	0	0									1	29.531	29.531	2	0.019223	7952	20190902_JH_WT_Ubi_3	66.989	22.671	24990000	0	0	0	0	0	0	0	0	24990000			2559	439	2249	7372	7751	7751				1
IREDLPNLESSEETEQINK	Unmodified	2243.0917	0.091734718	1810	sp|Q96QK1|VPS35_HUMAN	yes	yes	0	0	0	0	1			1							33.164	33.164	3	0.0003334	7375	20190821_JH_WT_Ubi	100.69	53.723	3651800	0	0	3651800	0	0	0	0	0	0			2560	1810	2250	7373	7752	7752				1
ISALQSAGVVVSMSPAQLGTTIYK	Oxidation (M)	2436.2934	0.29341141	948	sp|P53597|SUCA_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	45.223	45.223	3	1.0584E-16	12155	20190821_JH_WT_Ubi	135.55	108.58	29687000	0	3814200	8524200	0	0	3603500	4683900	5009700	4051900			2561	948	2251	7374;7375;7376;7377;7378;7379	7753;7754;7755;7756;7757;7758	7756			592	5
ISALQSAGVVVSMSPAQLGTTIYK	Unmodified	2420.2985	0.29849679	948	sp|P53597|SUCA_HUMAN	yes	yes	0	0	0	0	0		1	1							49.528	49.528	3	1.672E-30	13063	20190821_JH_MUT_Ubi	165	137.52	11065000	0	4216200	6848800	0	0	0	0	0	0			2562	948	2251	7380;7381	7759;7760	7759				2
ISASLQSQSPEHLLPVLIQAAQLCR	Unmodified	2758.48	0.47998341	314	sp|O76094-2|SRP72_HUMAN;sp|O76094|SRP72_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	50.22	50.22	3	4.6629E-34	14077	20190821_JH_WT_Ubi	162.44	114.63	27725000	0	11702000	9665600	0	0	2193400	1559200	1326300	1278100			2563	314	2252	7382;7383;7384;7385;7386;7387	7761;7762;7763;7764;7765;7766	7764				6
ISDEILSDTIGEKK	GlyGly (K)	1660.8519	0.85194536	2042	sp|Q9NVA4|T184C_HUMAN	yes	yes	0	0	1	0	1	1					1				33.622	33.622	3	0.00072502	8625	20190902_JH_MUT_Ubi_2	107.65	53.121	4113500	1105000	0	0	0	0	3008500	0	0	0			2564	2042	2253	7388;7389	7767;7768	7768		1936;1937		2
ISESGFQHLENLACLYLGSNNLTK	2 Deamidation (NQ)	2709.2956	0.29559626	1526	sp|Q7Z2Q7|LRR70_HUMAN	yes	yes	0	2	0	0	0					1					58.227	58.227	3	0.0027689	13652	20190902_JH_EV_Ubi_3	60.621	25.598	2606000	0	0	0	0	2606000	0	0	0	0			2565	1526	2254	7390	7769	7769	483;484			1
ISFPAIQAAPSFSNSFPQIFR	Unmodified	2324.1954	0.19535235	661	sp|P23381-2|SYWC_HUMAN;sp|P23381|SYWC_HUMAN	yes	no	0	0	0	0	0		1				1	1			54.333	54.333	3	8.5582E-22	15089	20190902_JH_MUT_Ubi_2	148.06	113.79	12610000	0	6236300	0	0	0	2329400	4044400	0	0			2566	661	2255	7391;7392;7393	7770;7771;7772	7771				3
ISGETIFVTAPHEATAGIIGVNR	Unmodified	2352.2438	0.24375911	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0		1	1		1	1	1		1	41.876	41.876	3	7.3424E-30	10817	20190821_JH_WT_Ubi	166.28	130.15	56232000	0	4824200	27844000	0	1180500	3619400	4011600	0	14752000			2567	1123	2256	7394;7395;7396;7397;7398;7399	7773;7774;7775;7776;7777;7778	7777				6
ISGNLDSPEGGFDAIMQVAVCGSLIGWR	Oxidation (M)	2964.411	0.41097714	429	sp|P05556|ITB1_HUMAN;sp|P05556-2|ITB1_HUMAN;sp|P05556-5|ITB1_HUMAN;sp|P05556-4|ITB1_HUMAN;sp|P05556-3|ITB1_HUMAN	yes	no	0	0	0	1	0		1	1							54.477	54.477	3	2.0871E-06	15618	20190821_JH_WT_Ubi	86.997	45.307	5846600	0	1366500	4480100	0	0	0	0	0	0			2568	429	2257	7400;7401	7779;7780	7780			221	2
ISGWTQALPDMVVSHLFGK	Oxidation (M)	2101.0666	0.066646362	1714	sp|Q92597|NDRG1_HUMAN;sp|Q92597-3|NDRG1_HUMAN;sp|Q92597-2|NDRG1_HUMAN	yes	no	0	0	0	1	0		1	1							50.043	50.043	3	0.016786	13933	20190821_JH_WT_Ubi	51.495	18.501	7133200	0	1194900	5938300	0	0	0	0	0	0			2569	1714	2258	7402;7403	7781;7782	7782			975	2
ISGWTQALPDMVVSHLFGK	Unmodified	2085.0717	0.07173174	1714	sp|Q92597|NDRG1_HUMAN;sp|Q92597-3|NDRG1_HUMAN;sp|Q92597-2|NDRG1_HUMAN	yes	no	0	0	0	0	0		1	1							53.145	53.145	3	2.6748E-06	15041	20190821_JH_WT_Ubi	113.14	77.667	16173000	0	3490400	12682000	0	0	0	0	0	0			2570	1714	2258	7404;7405	7783;7784	7784				2
ISLGLPVGAVINCADNTGAK	Unmodified	1969.0303	0.030260856	1060	sp|P62829|RL23_HUMAN	yes	yes	0	0	0	0	0		1								47.053	47.053	2	0.030109	12191	20190821_JH_MUT_Ubi	47.774	20.636	2066200	0	2066200	0	0	0	0	0	0	0			2571	1060	2259	7406	7785	7785				1
ISMPGFKGEGPEVDVNLPK	Oxidation (M);GlyGly (K)	2143.062	0.061954915	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	1	1						1				35.476	35.476	3	0.0082675	9473	20190902_JH_MUT_Ubi_2	62.94	31.521	2252600	0	0	0	0	0	2252600	0	0	0			2572	1190	2260	7407	7786	7786		1215	749	1
ISNTAISISDHTALAQFCK	Unmodified	2076.031	0.030989138	648	sp|P22102|PUR2_HUMAN;sp|P22102-2|PUR2_HUMAN	yes	no	0	0	0	0	0							1			37.07	37.07	3	0.024161	9403	20190902_JH_MUT_Ubi_3	54.768	15.735	0	0	0	0	0	0	0	0	0	0			2573	648	2261	7408	7787	7787				1
ISPKGVDIVMDPLGGSDTAK	Oxidation (M);GlyGly (K)	2129.0674	0.067434223	1836	sp|Q99536|VAT1_HUMAN;sp|Q99536-3|VAT1_HUMAN;sp|Q99536-2|VAT1_HUMAN	yes	no	0	0	1	1	1			1			1		1		35.869	35.869	3	1.2759E-06	8332	20190821_JH_WT_Ubi	117.55	63.257	18439000	0	0	3859900	0	0	3473700	0	11106000	0			2574	1836	2262	7409;7410;7411	7788;7789;7790	7789		1797	1015	3
ISPKGVDIVMDPLGGSDTAK	GlyGly (K)	2113.0725	0.072519601	1836	sp|Q99536|VAT1_HUMAN;sp|Q99536-3|VAT1_HUMAN;sp|Q99536-2|VAT1_HUMAN	yes	no	0	0	1	0	1			1					1	1	39.662	39.662	3	0.0018191	11793	20190902_JH_WT_Ubi_2	72.568	33.045	10834000	0	0	5263000	0	0	0	0	2476800	3093700			2575	1836	2262	7412;7413;7414	7791;7792;7793	7792		1797		3
ISSIQSIVPALEIANAHR	Unmodified	1918.0636	0.063609895	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	43.816	43.816	3	2.3193E-06	11577	20190821_JH_WT_Ubi	119.08	93.119	99471000	0	5751500	43093000	0	0	5044300	7117900	18674000	19791000			2576	515	2263	7415;7416;7417;7418;7419;7420	7794;7795;7796;7797;7798;7799	7797				6
ISSVNLDKLINDFSQIEKK	3 GlyGly (K);2 Deamidation (NQ)	2534.2864	0.28641178	1414	sp|Q4G0S7-2|CC152_HUMAN;sp|Q4G0S7|CC152_HUMAN	yes	no	0	2	3	0	2	1									39.393	39.393	3	0.019513	9929	20190821_JH_EV_Ubi	48.907	7.5595	1145600	1145600	0	0	0	0	0	0	0	0			2577	1414	2264	7421	7800	7800	447;448;1064	1433;1434;1435		1
ISTSLNPGNPVNNQIFLQEYVANLLK	Unmodified	2885.5287	0.52870774	166	sp|O14980|XPO1_HUMAN	yes	yes	0	0	0	0	0	1	1				1				55.356	55.356	3	1.0601E-16	14694	20190821_JH_EV_Ubi	134.42	92.888	12684000	7853500	3603100	0	0	0	1227600	0	0	0			2578	166	2265	7422;7423;7424	7801;7802;7803	7801				3
ISVAGVTSSNVGYLAHAIHQVTK	Unmodified	2351.2597	0.25974352	381	sp|P00505-2|AATM_HUMAN;sp|P00505|AATM_HUMAN	yes	no	0	0	0	0	0	2	1	1	1	1	1	1	1	1	40.356	40.356	2;3;4	0.00061313	9751	20190821_JH_MUT_Ubi	72.421	43.552	792060000	282410000	5123400	151190000	81039000	139800000	39819000	16894000	43639000	32150000			2579	381	2266	7425;7426;7427;7428;7429;7430;7431;7432;7433;7434	7804;7805;7806;7807;7808;7809;7810;7811;7812;7813	7808				9
ISVIVETVYTHVLHPYPTQITQSEK	Unmodified	2881.5226	0.52255973	413	sp|P04843|RPN1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	2	1		1	1	43.545	43.545	3;4	5.4723E-10	11503	20190821_JH_WT_Ubi	101.62	79.781	179790000	71989000	12003000	54929000	6807700	6306700	4389500	0	11920000	11448000			2580	413	2267	7435;7436;7437;7438;7439;7440;7441;7442;7443	7814;7815;7816;7817;7818;7819;7820;7821;7822;7823	7820				10
ISYMAYDPQK	Unmodified	1214.5642	0.56415996	40		yes	yes	0	0	0	0	0			1							38.729	38.729	2	0.011258	9399	20190821_JH_WT_Ubi	92.47	18.539	1252300	0	0	1252300	0	0	0	0	0	0	+		2581	40	2268	7444	7824	7824				0
ITAFVPNDGCLNFIEENDEVLVAGFGR	Unmodified	2995.4386	0.4385721	1045	sp|P62266|RS23_HUMAN	yes	yes	0	0	0	0	0								1		55.148	55.148	3	0.0020284	16368	20190902_JH_WT_Ubi_2	55.871	27.693	2889400	0	0	0	0	0	0	0	2889400	0			2582	1045	2269	7445	7825	7825				1
ITDFGLAKLLGAEEK	GlyGly (K)	1717.9251	0.92505073	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1	1	1			1	1	1			44.943	44.943	3	5.958E-06	12999	20190902_JH_MUT_Ubi_2	130.66	79.653	7160100	1359800	1284700	0	0	664470	2462200	1388900	0	0			2583	382	2270	7446;7447;7448;7449;7450	7826;7827;7828;7829;7830	7829		340;341		5
ITDLANLSAANHDAAIFPGGFGAAK	Unmodified	2441.2339	0.2339227	721	sp|P30042-2|ES1_HUMAN;sp|P30042|ES1_HUMAN	yes	no	0	0	0	0	0			1					1	1	43.991	43.991	3	6.9687E-07	11656	20190821_JH_WT_Ubi	93.804	46.05	17481000	0	0	6863800	0	0	0	0	4211800	6405300			2584	721	2271	7451;7452;7453	7831;7832;7833	7831				3
ITDSIEALAMIK	Oxidation (M)	1319.7007	0.70065344	1649	sp|Q8NEP3-3|DAAF1_HUMAN;sp|Q8NEP3-2|DAAF1_HUMAN;sp|Q8NEP3|DAAF1_HUMAN	yes	no	0	0	0	1	0			1				1			21.893	21.893	3	0.024197	4622	20190902_JH_MUT_Ubi_3	63.624	11.698	8138500	0	0	3497400	0	0	0	4641200	0	0			2585	1649	2272	7454;7455	7834;7835	7834			954	2
ITGAQVGTGCGTLNDGKSLYFNGPGK	GlyGly (K);2 Deamidation (NQ)	2727.281	0.28100883	1106	sp|P78509-3|RELN_HUMAN;sp|P78509-2|RELN_HUMAN;sp|P78509|RELN_HUMAN	yes	no	0	2	1	0	1									1	41.673	41.673	3	0.0098681	12084	20190902_JH_WT_Ubi_3	51.645	11.74	2862300	0	0	0	0	0	0	0	0	2862300			2586	1106	2273	7456	7836	7836	361;362	1102		1
ITGINHENLIMDHMVK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1995.9394	0.93939694	246	sp|O60469-2|DSCAM_HUMAN;sp|O60469|DSCAM_HUMAN	yes	no	0	2	1	1	0	1									36.277	36.277	3	0.02119	8857	20190821_JH_EV_Ubi	46.68	19.655	6521200	6521200	0	0	0	0	0	0	0	0			2587	246	2274	7457	7837	7837	79;80	221	107	1
ITHSPLTICFPEYTGANK	Unmodified	2048.0037	0.0037117545	415	sp|P04899-6|GNAI2_HUMAN;sp|P04899-3|GNAI2_HUMAN;sp|P04899-5|GNAI2_HUMAN;sp|P04899-2|GNAI2_HUMAN;sp|P04899|GNAI2_HUMAN;sp|P04899-4|GNAI2_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	38.916	38.916	3	4.1754E-05	9552	20190821_JH_WT_Ubi	107.13	60.468	19114000	0	0	8367100	0	0	898100	0	4738600	5109800			2588	415	2275	7458;7459;7460;7461	7838;7839;7840;7841;7842	7839				5
ITLDNAYMEKCDENILWLDYK	Oxidation (M);GlyGly (K)	2776.2724	0.27241798	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	1	1								1		45.096	45.096	3	0.017817	13532	20190902_JH_WT_Ubi_2	57.171	36.514	0	0	0	0	0	0	0	0	0	0			2589	556	2276	7462	7843	7843		546	344	1
ITLVNTTYTINYCK	GlyGly (K);2 Deamidation (NQ)	1818.871	0.87096625	1913	sp|Q9C0B2-2|CFA74_HUMAN;sp|Q9C0B2|CFA74_HUMAN	yes	no	0	2	1	0	0		1								30.007	30.007	3	0.022265	5865	20190821_JH_MUT_Ubi	53.754	8.6384	2933000	0	2933000	0	0	0	0	0	0	0			2590	1913	2277	7463	7844	7844	611;612	1848		1
ITQVQEDITNLK	2 Deamidation (NQ)	1402.7191	0.71914028	1438	sp|Q5T0U0|CC122_HUMAN;sp|Q5T0U0-2|CC122_HUMAN	yes	no	0	2	0	0	0				1						25.912	25.912	3	0.023366	5634	20190902_JH_EV_Ubi_2	65.842	8.4934	0	0	0	0	0	0	0	0	0	0			2591	1438	2278	7464	7845	7845	454;1071			1
ITSAVWGPLGECIIAGHESGELNQYSAK	Unmodified	2986.4495	0.44947114	1231	sp|Q13347|EIF3I_HUMAN	yes	yes	0	0	0	0	0			1							44.968	44.968	3	0.0045584	12054	20190821_JH_WT_Ubi	48.961	21.014	1547900	0	0	1547900	0	0	0	0	0	0			2592	1231	2279	7465	7846	7846				1
ITSAVWGPLGECIIAGHESGELNQYSAKSGEVLVNVK	GlyGly (K)	4026.0157	0.015680009	1231	sp|Q13347|EIF3I_HUMAN	yes	yes	0	0	1	0	1			1							45.476	45.476	4	0.00014349	12238	20190821_JH_WT_Ubi	52.549	29.381	8173200	0	0	8173200	0	0	0	0	0	0			2593	1231	2280	7466	7847	7847		1299		1
ITSDEPLTKDDIPVFLR	GlyGly (K)	2072.079	0.078985188	2100	sp|Q9UBB4-2|ATX10_HUMAN;sp|Q9UBB4|ATX10_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	43.168	43.168	3	6.0831E-27	10881	20190821_JH_MUT_Ubi	182.7	113.94	354300000	51989000	38369000	48187000	25748000	14567000	45470000	58798000	29703000	41464000			2594	2100	2281	7467;7468;7469;7470;7471;7472;7473;7474;7475	7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860	7854		1971		13
ITSFPESEGYSYETSTKTTR	GlyGly (K)	2397.0972	0.097214027	860	sp|P46821|MAP1B_HUMAN	yes	yes	0	0	1	0	1									1	30.818	30.818	3	0.035854	8365	20190902_JH_WT_Ubi_3	43.383	19.583	1649800	0	0	0	0	0	0	0	0	1649800			2595	860	2282	7476	7861	7861				1
ITVVGVGAVGMACAISILMK	2 Oxidation (M)	2021.0723	0.072325367	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	2	0	1	1	1	1		1	1	1	1	47.809	47.809	3	1.3084E-49	12517	20190821_JH_MUT_Ubi	204.81	170.39	100520000	4244200	12159000	25084000	1106400	0	16529000	11406000	11957000	18031000			2596	373	2283	7477;7478;7479;7480;7481;7482;7483;7484	7862;7863;7864;7865;7866;7867;7868;7869;7870	7864			166;167	9
ITVVGVGAVGMACAISILMK	Oxidation (M)	2005.0774	0.077410745	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	1	0	1	2	2			2	2	1	2	52.878	52.878	3	2.4229E-73	15412	20190821_JH_WT_Ubi	229.69	180.15	102210000	2061700	28365000	46847000	0	0	7555600	9498100	3097100	4786700			2597	373	2283	7485;7486;7487;7488;7489;7490;7491;7492;7493;7494;7495;7496	7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883	7880			166;167	13
ITVVGVGAVGMACAISILMK	Unmodified	1989.0825	0.082496122	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	0	0		1	1							55.968	55.968	3	1.038E-140	16022	20190821_JH_WT_Ubi	273.52	227.4	19998000	0	9844400	10154000	0	0	0	0	0	0			2598	373	2283	7497;7498	7884;7885	7885				2
ITVVGVGQVGMACAISILGK	Oxidation (M)	1988.0799	0.079853586	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	1	0	1	1	1		1	1	1	1	1	47.514	47.514	3	2.8952E-60	12512	20190902_JH_MUT_Ubi_3	215.51	187.79	86254000	2403100	16705000	13135000	0	835170	17028000	12721000	6094300	17333000			2599	442	2284	7499;7500;7501;7502;7503;7504;7505;7506	7886;7887;7888;7889;7890;7891;7892;7893	7890			242	8
ITVVGVGQVGMACAISILGK	Unmodified	1972.0849	0.084938963	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	0	0		2	1			1	1	1	1	53.107	53.107	2;3	1.551E-73	14093	20190821_JH_MUT_Ubi	229.96	202.53	119120000	0	79496000	21635000	0	0	6307200	7178200	2170400	2338100			2600	442	2284	7507;7508;7509;7510;7511;7512;7513	7894;7895;7896;7897;7898;7899;7900	7894				6
ITVVGVGQVGMACAISILGK	Oxidation (M);Deamidation (NQ)	1989.0639	0.06386917	442	sp|P07195|LDHB_HUMAN	yes	yes	0	1	0	1	0						1	1			48.496	48.496	2;3	0.0012935	14045	20190902_JH_MUT_Ubi_2	93.237	61.806	842090	0	0	0	0	0	842090	0	0	0			2601	442	2284	7514;7515	7901;7902	7901	831		242	1
IVAERPGTNSTGPAPMAPPR	Oxidation (M)	2034.0317	0.031657839	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	0	1	1				1	1			1		24.943	24.943	3	0.0079892	5345	20190902_JH_EV_Ubi_3	69.935	34.309	4316600	0	0	0	1255000	1454800	0	0	1606800	0			2602	1227	2285	7516;7517;7518	7903;7904;7905	7904			771	3
IVAPELYIAVGISGAIQHLAGMK	Oxidation (M)	2366.3032	0.30318824	548	sp|P13804-2|ETFA_HUMAN;sp|P13804|ETFA_HUMAN	yes	no	0	0	0	1	0		1								54.831	54.831	3	0.0013322	14636	20190821_JH_MUT_Ubi	68.639	46.418	5089300	0	5089300	0	0	0	0	0	0	0			2603	548	2286	7519	7906	7906			334	1
IVAPGKGILAADESTGSIAK	GlyGly (K)	2011.095	0.094969603	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	1	0	1			1			1	1	1	1	33.699	33.699	3	1.8902E-06	7620	20190821_JH_WT_Ubi	112.82	84.965	43166000	0	0	11165000	0	0	4709100	4993400	12005000	10293000			2604	400	2287	7520;7521;7522;7523;7524	7907;7908;7909;7910;7911	7909		369		5
IVDILYATDEGFVIPDEGGPQEEQEEY	Unmodified	3054.387	0.38697327	1361	sp|Q15691|MARE1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	56.702	56.702	3	1.5577E-07	15989	20190902_JH_WT_Ubi_3	97.152	63.394	4323400	0	0	1598100	0	0	0	0	1491800	1233500			2605	1361	2288	7525;7526;7527	7912;7913;7914;7915;7916	7914				5
IVEIDAHIGCAMSGLIADAK	Unmodified	2083.0442	0.044196361	706	sp|P28066-2|PSA5_HUMAN;sp|P28066|PSA5_HUMAN	yes	no	0	0	0	0	0	1									44.907	44.907	3	0.0076117	12071	20190821_JH_EV_Ubi	57.745	4.1764	1054900	1054900	0	0	0	0	0	0	0	0			2606	706	2289	7528	7917	7917				1
IVEQENAIQTMELR	Oxidation (M);2 Deamidation (NQ)	1690.8084	0.80836599	2247	sp|Q9Y5X2|SNX8_HUMAN	yes	yes	0	2	0	1	0			1							39.186	39.186	3	0.017333	9578	20190821_JH_WT_Ubi	59.116	13.759	1187200	0	0	1187200	0	0	0	0	0	0			2607	2247	2290	7529	7918	7918	707;1337;1338		1160	0
IVFSGNLFQHQEDSK	Unmodified	1747.8529	0.85294842	1830	sp|Q96TA1-2|NIBL1_HUMAN;sp|Q96TA1|NIBL1_HUMAN	yes	no	0	0	0	0	0						1	1		1	35.348	35.348	3	0.016121	9447	20190902_JH_MUT_Ubi_2	58.754	15.126	13601000	0	0	0	0	0	3972800	3273000	0	6355200			2608	1830	2291	7530;7531;7532	7919;7920;7921	7919				3
IVGCTHITAQTAVLIETLCALGAQCR	Unmodified	2855.4456	0.44558851	226	sp|O43865-2|SAHH2_HUMAN;sp|O43865|SAHH2_HUMAN	yes	no	0	0	0	0	0	1	2	1			1	1	1		52.164	52.164	3	1.9994E-07	13392	20190902_JH_MUT_Ubi_3	97.253	64.861	28887000	1769800	9634200	13801000	0	0	1291100	792540	1597900	0			2609	226	2292	7533;7534;7535;7536;7537;7538;7539	7922;7923;7924;7925;7926;7927;7928;7929	7926				8
IVGPSGAAVPCKVEPGLGADNSVVR	GlyGly (K)	2562.3224	0.32242013	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1			35.535	35.535	3	0.00053603	8833	20190902_JH_MUT_Ubi_3	72.316	42.424	22187000	0	4175800	3970600	0	3575900	6296500	4168500	0	0			2610	637	2293	7540;7541;7542;7543;7544	7930;7931;7932;7933;7934	7933		608		5
IVQKYFLEMKNK	Oxidation (M);3 GlyGly (K)	1897.972	0.9720177	219	sp|O43795-2|MYO1B_HUMAN;sp|O43795|MYO1B_HUMAN	yes	no	0	0	3	1	2					1					24.968	24.968	3	0.035786	5405	20190902_JH_EV_Ubi_3	42.001	9.7256	1707200	0	0	0	0	1707200	0	0	0	0			2611	219	2294	7545	7935	7935				0
IVQTYHVNMAGTNPYTTITPQEINGK	Oxidation (M);Deamidation (NQ)	2906.412	0.412023	537	sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	yes	no	0	1	0	1	0									1	35.969	35.969	3	0.0013898	10163	20190902_JH_WT_Ubi_3	69.435	29.788	974540	0	0	0	0	0	0	0	0	974540			2612	537	2295	7546	7936	7936	206		319	1
IVSGKDYNVTANSK	GlyGly (K)	1608.8107	0.81074925	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	1	0	1		1					1			22.107	22.107	3	0.021829	4680	20190902_JH_MUT_Ubi_3	62.162	33.835	3708500	0	530410	0	0	0	0	3178100	0	0			2613	373	2296	7547;7548	7937;7938	7938		335		2
IVSLFAEHNDLQYAAPGGLIGVGTK	Unmodified	2569.354	0.35403784	819	sp|Q2VIR3-2|IF2GL_HUMAN;sp|Q2VIR3|IF2GL_HUMAN;sp|P41091|IF2G_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1		1	46.171	46.171	3	2.8748E-10	12198	20190902_JH_MUT_Ubi_3	107.07	69.148	32515000	4355000	3978100	11875000	862490	1974900	2294300	2701800	0	4473400			2614	819	2297	7549;7550;7551;7552;7553;7554;7555;7556	7939;7940;7941;7942;7943;7944;7945;7946;7947;7948;7949	7946				11
IVYGHLDDPASQEIER	Unmodified	1840.8955	0.89554151	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0								1	1	32.223	32.223	3	6.7084E-05	9209	20190902_JH_WT_Ubi_2	109.99	80.01	17894000	0	0	0	0	0	0	0	8010300	9883800			2615	1847	2298	7557;7558	7950;7951	7950				2
IWHHTFYNELR	Unmodified	1514.7419	0.74188183	1000;1087;1094;1490	sp|P60709|ACTB_HUMAN;sp|Q9BYX7|ACTBM_HUMAN;sp|P0CG39|POTEJ_HUMAN;sp|P0CG38|POTEI_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN	no	no	0	0	0	0	0	1		1		1	1	1	1		28.512	28.512	3	1.4597E-05	6033	20190821_JH_WT_Ubi	115.23	75.315	13206000	1115200	0	0	0	1244700	2473100	1080600	7292800	0			2616	1000;1087;1094;1490	2299	7559;7560;7561;7562;7563;7564	7952;7953;7954;7955;7956;7957;7958;7959	7957				8
IWHPNISSVTGAICLDILK	Unmodified	2136.1401	0.14014566	1012	sp|P61086-2|UBE2K_HUMAN;sp|P61086-3|UBE2K_HUMAN;sp|P61086|UBE2K_HUMAN	yes	no	0	0	0	0	0		1	1							49.444	49.444	3	4.2088E-18	13721	20190821_JH_WT_Ubi	152.01	92.75	11304000	0	6245800	5057900	0	0	0	0	0	0			2617	1012	2300	7565;7566	7960;7961	7961				2
IYEFPETDDEEENKLVK	GlyGly (K)	2211.0219	0.021923819	1373	sp|Q16181-2|SEPT7_HUMAN;sp|Q16181|SEPT7_HUMAN	yes	no	0	0	1	0	1						1		1		35.665	35.665	3	0.0042186	10457	20190902_JH_WT_Ubi_2	73.022	30.641	4161500	0	0	0	0	0	1820000	0	2341500	0			2618	1373	2301	7567;7568	7962;7963	7963		1412;1413		2
IYGNKTELLVDRDEEVK	GlyGly (K)	2134.0906	0.090612506	1983	sp|Q9HBU6-2|EKI1_HUMAN;sp|Q9HBU6|EKI1_HUMAN	yes	no	0	0	1	0	2		1				1				29.522	29.522	4	0.016024	5776	20190821_JH_MUT_Ubi	54.95	24.778	5422600	0	2346100	0	0	0	3076500	0	0	0			2619	1983	2302	7569;7570	7964;7965	7964		1906		2
IYHCNINSQGVICLDILKDNWSPALTISK	GlyGly (K)	3485.7435	0.74354467	929	sp|P51965-2|UB2E1_HUMAN;sp|P51965|UB2E1_HUMAN;sp|P51965-3|UB2E1_HUMAN;sp|Q96LR5|UB2E2_HUMAN;sp|Q969T4|UB2E3_HUMAN	yes	no	0	0	1	0	1		1								47.417	47.417	4	1.1216E-05	12348	20190821_JH_MUT_Ubi	84.312	46.3	3915700	0	3915700	0	0	0	0	0	0	0			2620	929	2303	7571	7966	7966		897		1
IYHPNIDEKGQVCLPVISAENWK	GlyGly (K)	2823.4014	0.40139873	1095	sp|P68036-2|UB2L3_HUMAN;sp|P68036|UB2L3_HUMAN;sp|P68036-3|UB2L3_HUMAN;sp|A0A1B0GUS4|UB2L5_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	39.957	39.957	4	0.0018736	11907	20190902_JH_WT_Ubi_2	63.606	27.909	137870000	4997100	20035000	70023000	0	0	9076200	6473400	13441000	13830000			2621	1095	2304	7572;7573;7574;7575;7576;7577;7578	7967;7968;7969;7970;7971;7972;7973	7972		1094		7
IYHTIAYLTPLPQPNR	Unmodified	1896.0258	0.025767826	512	sp|P10620|MGST1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	38.091	38.091	3	7.9187E-08	9549	20190821_JH_EV_Ubi	130.2	89.622	511990000	63335000	14420000	76522000	76398000	84335000	20990000	19737000	55827000	100430000			2622	512	2305	7579;7580;7581;7582;7583;7584;7585;7586;7587	7974;7975;7976;7977;7978;7979;7980;7981;7982;7983	7974				10
IYHTIAYLTPLPQPNR	Deamidation (NQ)	1897.0098	0.0097834104	512	sp|P10620|MGST1_HUMAN	yes	yes	0	1	0	0	0					1			1	1	38.643	38.643	3	0.011898	9546	20190902_JH_EV_Ubi_3	85.837	50.534	15213000	0	0	0	0	2810500	0	0	6059900	6342500			2623	512	2305	7588;7589;7590	7984;7985;7986	7984	194;855			3
IYITLTGVHQVPTENVQVHFTER	Unmodified	2680.3973	0.39729963	1979	sp|Q9HB71-3|CYBP_HUMAN;sp|Q9HB71|CYBP_HUMAN	yes	no	0	0	0	0	0			1					1		39.692	39.692	4	0.0095207	9771	20190821_JH_WT_Ubi	48.832	30.584	77717000	0	0	71971000	0	0	0	0	5745500	0			2624	1979	2306	7591;7592	7987;7988	7987				2
IYPHGLVLLDLQSYDGDAQGK	Unmodified	2301.1641	0.1641118	939	sp|P52788|SPSY_HUMAN	yes	yes	0	0	0	0	0			1					1	1	45.174	45.174	3	1.8116E-11	12134	20190821_JH_WT_Ubi	129.43	77.382	9169800	0	0	5422000	0	0	0	0	1680100	2067700			2625	939	2307	7593;7594;7595	7989;7990;7991	7989				3
IYQNIQDGSLDLNAAESGVQHKPSAPQGGR	GlyGly (K)	3263.5919	0.59192971	1014	sp|P61106|RAB14_HUMAN	yes	yes	0	0	1	0	1		1	1	1		1				33.03	33.03	4	2.4565E-05	8381	20190902_JH_MUT_Ubi_2	77.675	58.272	25817000	0	7756800	7664000	3330100	0	7066000	0	0	0			2626	1014	2308	7596;7597;7598;7599	7992;7993;7994;7995	7994		1001		4
IYQTFVALAAQLQSIHENVK	Unmodified	2272.2216	0.2215671	1884	sp|Q9BVL2-2|NUP58_HUMAN;sp|Q9BVL2-3|NUP58_HUMAN;sp|Q9BVL2|NUP58_HUMAN	yes	no	0	0	0	0	0	1	1	1		1					48.327	48.327	3	0.001237	13182	20190821_JH_EV_Ubi	72.793	51.26	16421000	5569100	3750000	5845400	0	1256900	0	0	0	0			2627	1884	2309	7600;7601;7602;7603	7996;7997;7998;7999	7996				4
IYRYQSHDYAFSSVEK	GlyGly (K)	2105.9807	0.98066813	2128	sp|Q9UHG3-2|PCYOX_HUMAN;sp|Q9UHG3|PCYOX_HUMAN	yes	no	0	0	1	0	1									1	32.393	32.393	3	0.020778	8891	20190902_JH_WT_Ubi_3	57.414	8.2264	5145600	0	0	0	0	0	0	0	0	5145600			2628	2128	2310	7604	8000	8000		1998		1
IYVASVHQDLSDDDIK	Unmodified	1816.8843	0.88430813	2136	sp|Q9UHX1-4|PUF60_HUMAN;sp|Q9UHX1-6|PUF60_HUMAN;sp|Q9UHX1-2|PUF60_HUMAN;sp|Q9UHX1-3|PUF60_HUMAN;sp|Q9UHX1-5|PUF60_HUMAN;sp|Q9UHX1|PUF60_HUMAN	yes	no	0	0	0	0	0								1		32.867	32.867	3	0.025161	9380	20190902_JH_WT_Ubi_2	48.467	9.6792	2309700	0	0	0	0	0	0	0	2309700	0			2629	2136	2311	7605	8001	8001				1
KACADATLSQITNNIDPVGR	GlyGly (K)	2257.1121	0.11209301	1066	sp|P62873-2|GBB1_HUMAN;sp|P62873|GBB1_HUMAN	yes	no	0	0	1	0	1			1			1	1			37.502	37.502	3	7.3898E-05	9479	20190902_JH_MUT_Ubi_3	97.352	58.209	17697000	0	0	9065600	0	0	4220400	4411300	0	0			2630	1066	2312	7606;7607;7608	8002;8003;8004	8003		1045		3
KACGDSTLTQITAGLDPVGR	GlyGly (K)	2173.0797	0.079730244	1067	sp|P62879|GBB2_HUMAN	yes	yes	0	0	1	0	1	1		1			1	1			39.07	39.07	3	3.0939E-06	10735	20190902_JH_MUT_Ubi_2	111.09	68.757	16894000	1531500	0	5184300	0	0	7842800	2335300	0	0			2631	1067	2313	7609;7610;7611;7612	8005;8006;8007;8008	8006		1046		4
KAEGKATSTTELPPEYLTSPLSQQSQLPPK	GlyGly (K)	3339.7198	0.71981556	163	sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN	yes	no	0	0	1	0	2		1								37.046	37.046	4	0.0014842	8445	20190821_JH_MUT_Ubi	51.22	27.654	3559000	0	3559000	0	0	0	0	0	0	0			2632	163	2314	7613	8009	8009		137;138;139		1
KAELDIDALNGR	GlyGly (K)	1427.7369	0.73685603	2089	sp|Q9P2D1|CHD7_HUMAN	yes	yes	0	0	1	0	1		1	1							52.298	52.298	3	0.012822	14751	20190821_JH_WT_Ubi	82.171	24.823	2593300	0	1130000	1463300	0	0	0	0	0	0			2633	2089	2315	7614;7615	8010;8011	8011		1967		2
KAGPLGGSSYEEEEEEEEGGGGGER	GlyGly (K)	2652.1059	0.10594081	1336	sp|Q15223|NECT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1		1		1	26.803	26.803	3	7.307E-53	5866	20190902_JH_EV_Ubi_3	185.64	114.8	9305200	2587900	411730	2118500	0	1708000	0	783040	0	1696100			2634	1336	2316	7616;7617;7618;7619;7620;7621	8012;8013;8014;8015;8016;8017;8018	8013		1392		7
KALEGMINNFGQTPCQLLK	GlyGly (K);2 Deamidation (NQ)	2277.1133	0.11333856	1506	sp|Q6ZS30-1|NBEL1_HUMAN;sp|Q6ZS30|NBEL1_HUMAN	yes	no	0	2	1	0	1		1								50.254	50.254	2	0.035022	13276	20190821_JH_MUT_Ubi	40.676	12.393	0	0	0	0	0	0	0	0	0	0			2635	1506	2317	7622	8019	8019	478;1097			1
KAMLQEIANQK	Oxidation (M);GlyGly (K)	1402.7238	0.7238485	1927	sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN;sp|Q9H0E3|SP130_HUMAN	yes	no	0	0	1	1	1						1				28.162	28.162	3	0.036179	6678	20190902_JH_MUT_Ubi_2	57.149	15.766	16918000	0	0	0	0	0	16918000	0	0	0			2636	1927	2318	7623	8020	8020		1863	1052	1
KAMLQEIANQK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1404.6919	0.69187967	1927	sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN;sp|Q9H0E3|SP130_HUMAN	yes	no	0	2	1	1	1									1	29.337	29.337	3	0.017341	7846	20190902_JH_WT_Ubi_3	69.979	15.329	2831700	0	0	0	0	0	0	0	0	2831700			2637	1927	2318	7624	8021	8021	617;1243	1863	1052	1
KANNSQEPSPQLASSVASTR	GlyGly (K)	2185.0723	0.07233668	1783	sp|Q96HC4-7|PDLI5_HUMAN;sp|Q96HC4-4|PDLI5_HUMAN;sp|Q96HC4|PDLI5_HUMAN	yes	no	0	0	1	0	1		1				1	1			25.88	25.88	3	1.0736E-05	5632	20190902_JH_MUT_Ubi_3	109.28	73.574	3125600	0	990820	0	0	0	1159900	974810	0	0			2638	1783	2319	7625;7626;7627	8022;8023;8024	8024		1750		3
KAVQLTQAMDTSTVGVLLAAK	Oxidation (M);GlyGly (K)	2274.2253	0.22533185	326	sp|O94979-7|SC31A_HUMAN;sp|O94979-6|SC31A_HUMAN;sp|O94979-3|SC31A_HUMAN;sp|O94979-10|SC31A_HUMAN;sp|O94979-4|SC31A_HUMAN;sp|O94979-9|SC31A_HUMAN;sp|O94979-2|SC31A_HUMAN;sp|O94979|SC31A_HUMAN;sp|O94979-8|SC31A_HUMAN	yes	no	0	0	1	1	1		1								38.193	38.193	3	0.0010604	8828	20190821_JH_MUT_Ubi	72.568	41.595	2577600	0	2577600	0	0	0	0	0	0	0			2639	326	2320	7628	8025	8025		301	153	1
KCASMVHLSQACQPK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1874.8437	0.84372241	207	sp|O43506|ADA20_HUMAN	yes	yes	0	1	1	1	1							1			17.085	17.085	3	0.015441	3675	20190902_JH_MUT_Ubi_3	60.196	21.428	1341700	0	0	0	0	0	0	1341700	0	0			2640	207	2321	7629	8026	8026	775	188	84	1
KDGVFLYFEDNAGVIVNNK	2 GlyGly (K);2 Deamidation (NQ)	2371.1332	0.1332056	1060	sp|P62829|RL23_HUMAN	yes	yes	0	2	2	0	1					1					33.483	33.483	3	0.021857	8116	20190902_JH_EV_Ubi_3	48.477	6.6169	917340	0	0	0	0	917340	0	0	0	0			2641	1060	2322	7630	8027	8027	340;341	1036;1037		1
KDLHDANTDLIGR	GlyGly (K)	1580.7907	0.79068251	955	sp|P53985|MOT1_HUMAN;sp|P53985-2|MOT1_HUMAN	yes	no	0	0	1	0	1			1							25.316	25.316	3	0.019913	4917	20190821_JH_WT_Ubi	70.438	24.119	2338400	0	0	2338400	0	0	0	0	0	0			2642	955	2323	7631	8028	8028		919		1
KDLQLLEDGDLTVIGDR	GlyGly (K)	2013.0378	0.037848654	187	sp|O15439|MRP4_HUMAN;sp|O15439-4|MRP4_HUMAN;sp|O15439-3|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		41.998	41.998	3	3.8304E-42	10804	20190821_JH_WT_Ubi	202.84	145.05	36577000	3769300	3664500	12838000	1864500	895230	4434700	4459000	4652200	0			2643	187	2324	7632;7633;7634;7635;7636;7637;7638;7639	8029;8030;8031;8032;8033;8034;8035;8036	8035		167		8
KDLYANTVLSGGTTMYPGIADR	Oxidation (M);GlyGly (K)	2472.1955	0.19548828	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	1	1	1	1		1	1	1	1	1	1	1	37.629	37.629	3	4.4035E-56	10172	20190902_JH_MUT_Ubi_2	198.1	150.9	68444000	3444400	0	12561000	2020400	1465800	11876000	9499400	11392000	16184000			2644	1000;1087	2325	7640;7641;7642;7643;7644;7645;7646;7647	8037;8038;8039;8040;8041;8042;8043;8044	8040		985	616	8
KDLYANTVLSGGTTMYPGIADR	GlyGly (K)	2456.2006	0.20057366	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	1	0	1						1		1		40.333	40.333	3	9.8271E-07	11215	20190902_JH_MUT_Ubi_2	103.35	52.629	7651500	0	0	0	0	0	3575500	0	4076000	0			2645	1000;1087	2325	7648;7649	8045;8046	8045		985		2
KDPVMPQNMIPLEDSNSHSLKK	Oxidation (M);2 Deamidation (NQ)	2525.2142	0.21417482	65	sp|A0A0J9YWL9|TX13C_HUMAN	yes	no	0	2	0	1	2									1	38.651	38.651	3	0.020828	11033	20190902_JH_WT_Ubi_3	49.528	10.945	4104900	0	0	0	0	0	0	0	0	4104900			2646	65	2326	7650	8047	8047	21;22		37	1
KDQEEGVMEKLQNGDLDHMIPQHCSSELDGK	Oxidation (M);4 Deamidation (NQ)	3586.5386	0.53855801	1320	sp|Q15043-2|S39AE_HUMAN;sp|Q15043-3|S39AE_HUMAN;sp|Q15043|S39AE_HUMAN	yes	no	0	4	0	1	2									1	31.701	31.701	3	0.025962	8660	20190902_JH_WT_Ubi_3	42.468	25.531	0	0	0	0	0	0	0	0	0	0			2647	1320	2327	7651	8048	8048	422;1035;1036;1037		824;825	1
KDVDAAYMSK	Oxidation (M);GlyGly (K)	1256.5707	0.5707019	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	18.174	18.174	3	0.0013597	3973	20190902_JH_MUT_Ubi_2	120.86	80.919	94536000	3234500	6059300	6312700	6530200	4120400	19902000	13971000	13920000	20486000		+	2648	8;19	2328	7652;7653;7654;7655;7656;7657;7658;7659;7660	8049;8050;8051;8052;8053;8054;8055;8056;8057	8053		28;40	14	9
KDVDAAYMSK	GlyGly (K)	1240.5758	0.57578728	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1			1	1		1	1	1		21.477	21.477	3	1.2715E-06	4526	20190902_JH_MUT_Ubi_3	119.03	64.046	16180000	0	0	3949600	923560	0	6715600	0	4590900	0		+	2649	8;19	2328	7661;7662;7663;7664;7665	8058;8059;8060;8061;8062	8060		28;40		5
KEDLVFIFWAPESAPLK	Unmodified	1989.0612	0.061150279	667	sp|P23528|COF1_HUMAN;sp|Q9Y281-3|COF2_HUMAN;sp|Q9Y281|COF2_HUMAN	yes	no	0	0	0	0	1	1	1	1			1	1	1	1	51.067	51.067	3	7.6121E-08	15330	20190902_JH_WT_Ubi_2	130.87	104.14	75271000	3973800	8829200	34020000	0	0	3295400	4864700	12863000	7424800			2650	667	2329	7666;7667;7668;7669;7670;7671;7672	8063;8064;8065;8066;8067;8068;8069	8068				7
KEDLVFIFWAPESAPLKSK	GlyGly (K)	2318.2311	0.23106915	667	sp|P23528|COF1_HUMAN;sp|Q9Y281-3|COF2_HUMAN;sp|Q9Y281|COF2_HUMAN	yes	no	0	0	1	0	2	1	1				1		1		45.545	45.545	3;4	3.3158E-05	13075	20190902_JH_MUT_Ubi_2	114.9	91.689	6859300	1433700	2655100	0	0	0	1089000	0	1681500	0			2651	667	2330	7673;7674;7675;7676	8070;8071;8072;8073;8074	8073		638;639		5
KEEEEEEEEYDEGSNLK	Unmodified	2084.8546	0.85458372	1283	sp|Q14165|MLEC_HUMAN	yes	yes	0	0	0	0	1								1		24.566	24.566	3	0.0001686	6522	20190902_JH_WT_Ubi_2	107.63	71.189	1553600	0	0	0	0	0	0	0	1553600	0			2652	1283	2331	7677	8075	8075				1
KEEELQAALAR	Unmodified	1256.6725	0.67246486	776	sp|P35579|MYH9_HUMAN;sp|P35749-4|MYH11_HUMAN;sp|P35749-3|MYH11_HUMAN;sp|P35749|MYH11_HUMAN;sp|P35749-2|MYH11_HUMAN;sp|Q7Z406-5|MYH14_HUMAN;sp|Q7Z406-4|MYH14_HUMAN;sp|Q7Z406|MYH14_HUMAN;sp|Q7Z406-6|MYH14_HUMAN;sp|Q7Z406-2|MYH14_HUMAN	yes	no	0	0	0	0	1			1							26.012	26.012	3	0.023264	5148	20190821_JH_WT_Ubi	77.062	26.779	1421700	0	0	1421700	0	0	0	0	0	0			2653	776	2332	7678	8076	8076				1
KEGEEEEENTEEPPQGEEEESMETQE	Oxidation (M)	3067.1732	0.17315326	1199	sp|Q12905|ILF2_HUMAN	yes	yes	0	0	0	1	1			1						1	26.176	26.176	3	9.7249E-13	6844	20190902_JH_WT_Ubi_3	121.5	103.7	3169700	0	0	1036100	0	0	0	0	0	2133600			2654	1199	2333	7679;7680	8077;8078	8078			759	2
KEGTGSTATSSSSTAGAAGK	GlyGly (K)	1868.8712	0.87117726	181	sp|O15372|EIF3H_HUMAN	yes	yes	0	0	1	0	1	1	1	1							12.466	12.466	3	0.014207	2215	20190821_JH_EV_Ubi	56.9	24.166	1394300	429190	304820	660300	0	0	0	0	0	0			2655	181	2334	7681;7682;7683	8079;8080;8081	8079		154		3
KEMQPTHPIR	Oxidation (M);GlyGly (K)	1365.6823	0.68231804	1078;749;1079;695	sp|P63104|1433Z_HUMAN;sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN;sp|P63104-2|1433Z_HUMAN;sp|P27348|1433T_HUMAN	no	no	0	0	1	1	1			1							11.94	11.94	3	0.030558	2255	20190821_JH_WT_Ubi	62.166	28.291	2676200	0	0	2676200	0	0	0	0	0	0			2656	1078;749;1079;695	2335	7684	8082	8082			435	1
KENCPACSQLPQNIQFSPSAK	GlyGly (K)	2517.174	0.17404133	1669	sp|Q8TBC4-2|UBA3_HUMAN;sp|Q8TBC4|UBA3_HUMAN	yes	no	0	0	1	0	1									1	32.558	32.558	3	0.018815	8970	20190902_JH_WT_Ubi_3	51.431	9.3075	2112900	0	0	0	0	0	0	0	0	2112900			2657	1669	2336	7685	8083	8083		1667		1
KENIIAFEEIIEPYR	GlyGly (K)	1977.0207	0.020742027	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1				44.641	44.641	3	2.5665E-06	11472	20190821_JH_MUT_Ubi	133.66	63.131	12249000	3678300	4336100	0	914660	1011200	2308400	0	0	0			2658	970	2337	7686;7687;7688;7689;7690	8084;8085;8086;8087;8088	8087		946		5
KEPEAFDWSPVVTYVCDLEGNR	Unmodified	2610.2061	0.20605297	810	sp|P40261|NNMT_HUMAN	yes	yes	0	0	0	0	1			1					1	1	51.999	51.999	3	3.9692E-68	14621	20190821_JH_WT_Ubi	216.31	165.38	21887000	0	0	11318000	0	0	0	0	7842600	2726800			2659	810	2338	7691;7692;7693	8089;8090;8091	8089				3
KESKEEETSIDVAGK	GlyGly (K)	1762.8585	0.85848731	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	2	1				1					19.752	19.752	3	7.2499E-05	3397	20190821_JH_EV_Ubi	121.99	75.668	4458700	1949200	0	0	0	2509500	0	0	0	0			2660	955	2339	7694;7695	8092;8093;8094	8092		916;918		2
KFDLGQDVIDFTGHALALYR	Unmodified	2278.1746	0.17461691	904;740	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN;sp|P31150|GDIA_HUMAN	no	no	0	0	0	0	1			1							50.952	50.952	3	0.033195	14337	20190821_JH_WT_Ubi	48.919	13.819	1392000	0	0	1392000	0	0	0	0	0	0			2661	904;740	2341	7696	8095	8095				1
KFDVNTSAVQVLIEHIGNLDR	Unmodified	2367.2547	0.25465814	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	1	1									49.812	49.812	3	4.3936E-36	13534	20190821_JH_EV_Ubi	172.55	144.44	3981100	3981100	0	0	0	0	0	0	0	0			2662	1123	2342	7697	8096	8096				1
KFQEQECPPSPEPTR	GlyGly (K)	1942.8843	0.8843249	1035	sp|P62070-2|RRAS2_HUMAN;sp|P62070-3|RRAS2_HUMAN;sp|P62070|RRAS2_HUMAN;sp|P62070-4|RRAS2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	24.225	24.225	3	4.5547E-15	4648	20190821_JH_WT_Ubi	160.79	117.03	80429000	7720800	3278800	11644000	9577700	5717900	3043600	3908100	22358000	13180000			2663	1035	2343	7698;7699;7700;7701;7702;7703;7704;7705;7706	8097;8098;8099;8100;8101;8102;8103;8104;8105;8106	8104		1013		10
KGAAAIEAEDREEEEGEEEK	GlyGly (K)	2332.0303	0.030256674	1709	sp|Q92508|PIEZ1_HUMAN	yes	yes	0	0	1	0	2	1	1		1	2					21.16	21.16	3;4	0.00017675	3300	20190821_JH_MUT_Ubi	107.03	85.038	17240000	6425400	1437000	0	4168400	5208700	0	0	0	0			2664	1709	2344	7707;7708;7709;7710;7711	8107;8108;8109;8110;8111	8111		1703;1704		5
KGDECELLGHSK	Unmodified	1371.6453	0.64526383	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	1			1					1	1	19.201	19.201	3	0.0066392	4812	20190902_JH_WT_Ubi_2	96.23	49.386	10528000	0	0	2353300	0	0	0	0	2690300	5484900			2665	883	2345	7712;7713;7714	8112;8113;8114	8113				3
KGDEYDVCAICLDEYEDGDK	GlyGly (K)	2507.0104	0.010449209	208	sp|O43567-2|RNF13_HUMAN;sp|O43567|RNF13_HUMAN	yes	no	0	0	1	0	1			1	1				1	1	38.162	38.162	3	1.2193E-30	11310	20190902_JH_WT_Ubi_2	174.02	143.06	35351000	0	0	12236000	3011700	0	0	0	9323700	10780000			2666	208	2346	7715;7716;7717;7718	8115;8116;8117;8118	8117		189		4
KGDVEGSQSQDEGEGSGESER	GlyGly (K)	2279.9374	0.93741892	2195	sp|Q9UQE7|SMC3_HUMAN	yes	yes	0	0	1	0	1	1		1		1	1	1		1	17.207	17.207	3	4.5035E-45	2914	20190821_JH_EV_Ubi	183.24	142.44	8680500	1834100	0	0	0	2919100	1531900	1545200	0	850150			2667	2195	2347	7719;7720;7721;7722;7723;7724	8119;8120;8121;8122;8123;8124	8119		2052		6
KGDVVIVLTGWR	Unmodified	1341.7769	0.77687035	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	1		1	1			1		1		39.442	39.442	3	0.0011788	9702	20190821_JH_WT_Ubi	115.57	82.301	31119000	0	6133500	16910000	0	0	4168500	0	3906900	0			2668	556	2348	7725;7726;7727;7728	8125;8126;8127;8128	8127				4
KGDVVIVLTGWRPGSGFTNTMR	Oxidation (M)	2406.2478	0.24779863	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	1	2		2	1			1	1	1	1	39.678	39.678	3;4	4.918E-06	9978	20190902_JH_MUT_Ubi_3	97.384	77.564	593600000	0	59917000	317740000	0	0	18385000	10145000	102120000	85291000			2669	556	2349	7729;7730;7731;7732;7733;7734;7735	8129;8130;8131;8132;8133;8134;8135;8136	8133			343	7
KGDVVIVLTGWRPGSGFTNTMR	Unmodified	2390.2529	0.252884	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	2						1			1	40.914	40.914	4	0.02193	11826	20190902_JH_WT_Ubi_3	48.896	19.512	32976000	0	0	0	0	0	16876000	0	0	16099000			2670	556	2349	7736;7737	8137;8138	8138				2
KGDVVIVLTGWRPGSGFTNTMR	Deamidation (NQ)	2391.2369	0.23689959	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	1	0	0	2			1							42.764	42.764	4	0.034146	11063	20190821_JH_WT_Ubi	42.908	21.105	7765500	0	0	7765500	0	0	0	0	0	0			2671	556	2349	7738	8139	8139	210			0
KGDVVIVLTGWRPGSGFTNTMR	Oxidation (M);Deamidation (NQ)	2407.2318	0.23181421	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	1	0	1	2									1	40.972	40.972	4	0.019503	11825	20190902_JH_WT_Ubi_3	45.844	15.16	10401000	0	0	0	0	0	0	0	0	10401000			2672	556	2349	7739	8140	8140	210		343	1
KGEITGEVHMPSGK	Oxidation (M);GlyGly (K)	1598.7723	0.77225526	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	1	1				1		1	1			18.387	18.387	3	0.0034359	3870	20190902_JH_EV_Ubi_2	86.944	50.652	9655300	0	0	0	0	0	3799600	5855700	0	0			2673	282	2350	7740;7741;7742	8141;8142;8143	8141		273	124	3
KGEITGEVHMPSGK	GlyGly (K)	1582.7773	0.77734063	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	0	1		1								23.799	23.799	3	0.010885	3809	20190821_JH_MUT_Ubi	74.475	42.878	749780	0	749780	0	0	0	0	0	0	0			2674	282	2350	7743	8144	8144		273		1
KGEITGEVHMPSGK	Unmodified	1468.7344	0.73441319	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	1								1		23.448	23.448	3	0.010375	6119	20190902_JH_WT_Ubi_2	77.372	48.469	3468700	0	0	0	0	0	0	0	3468700	0			2675	282	2350	7744	8145	8145				1
KGEKILILQGLK	GlyGly (K);Deamidation (NQ)	1453.8868	0.88681473	2180	sp|Q9UNX4|WDR3_HUMAN	yes	yes	0	1	1	0	2		1	1					1		54.936	54.936	3	0.011249	15726	20190821_JH_WT_Ubi	107.11	69.52	17442000	0	4196600	10224000	0	0	0	0	3021500	0			2676	2180	2351	7745;7746;7747	8146;8147;8148	8147	1314	2036;2037		3
KGEQELAEVKVEAIPNCK	GlyGly (K)	2155.0943	0.094317676	837	sp|P43007|SATT_HUMAN;sp|P43007-2|SATT_HUMAN	yes	no	0	0	1	0	2		1								30.341	30.341	3	0.0017051	5999	20190821_JH_MUT_Ubi	99.044	64.612	2456100	0	2456100	0	0	0	0	0	0	0			2677	837	2352	7748	8149	8149		807;808		1
KGGSYTQAASSDSAQGSDVSLTACK	GlyGly (K)	2589.1613	0.16128762	408	sp|P30455|1A36_HUMAN;sp|P30443|1A01_HUMAN;sp|P16188|1A30_HUMAN;sp|P13746|1A11_HUMAN;sp|P04439|1A03_HUMAN;sp|P13746-2|1A11_HUMAN	yes	no	0	0	1	0	1			1					1	1	26.329	26.329	3	1.2394E-104	6850	20190902_JH_WT_Ubi_3	237.51	193.75	32322000	0	0	9801600	0	0	0	0	10710000	11810000			2678	408	2353	7749;7750;7751	8150;8151;8152	8152		376;377		3
KGGSYTQAASSDSAQGSDVSLTACKV	GlyGly (K)	2688.2297	0.22970154	408	sp|P30455|1A36_HUMAN;sp|P30443|1A01_HUMAN;sp|P16188|1A30_HUMAN;sp|P13746|1A11_HUMAN;sp|P04439|1A03_HUMAN;sp|P13746-2|1A11_HUMAN	yes	no	0	0	1	0	2								1		29.514	29.514	3	4.4301E-06	8193	20190902_JH_WT_Ubi_2	96.317	61.525	2006900	0	0	0	0	0	0	0	2006900	0			2679	408	2354	7752	8153	8153		376;377		1
KGGSYTQAASSDSAQGSDVSLTACKV	2 GlyGly (K)	2802.2726	0.27262899	408	sp|P30455|1A36_HUMAN;sp|P30443|1A01_HUMAN;sp|P16188|1A30_HUMAN;sp|P13746|1A11_HUMAN;sp|P04439|1A03_HUMAN;sp|P13746-2|1A11_HUMAN	yes	no	0	0	2	0	2								1	1	29.437	29.437	3	3.4309E-14	8202	20190902_JH_WT_Ubi_2	129.62	94.966	6876300	0	0	0	0	0	0	0	3099700	3776700			2680	408	2354	7753;7754	8154;8155	8154		376;377		2
KGIVDQSQQAYQEAFEISK	GlyGly (K)	2282.1179	0.11788989	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	0	1	0	1					1				1	37.719	37.719	3	1.0709E-23	10719	20190902_JH_WT_Ubi_3	168.08	134.38	12155000	0	0	0	0	3791700	0	0	0	8363100			2681	1078;1079	2355	7755;7756	8156;8157	8157		1069		2
KGNTVQQFLKK	GlyGly (K);3 Deamidation (NQ)	1406.7405	0.74054442	2199	sp|Q9Y247|FA50B_HUMAN	yes	yes	0	3	1	0	2	1	1	1	1			1			27.776	27.776	3	0.0077134	5315	20190821_JH_MUT_Ubi	90.827	16.942	9179300	0	0	0	0	0	0	9179300	0	0			2682	2199	2356	7757;7758;7759;7760;7761	8158;8159;8160;8161;8162	8160	701;1324;1325	2054;2055		4
KGPLIAPGPDGAPAK	GlyGly (K)	1501.8253	0.8252771	869	sp|P48029|SC6A8_HUMAN	yes	yes	0	0	1	0	1					1					25.933	25.933	3	0.023051	5642	20190902_JH_EV_Ubi_3	61.409	31.876	2443200	0	0	0	0	2443200	0	0	0	0			2683	869	2357	7762	8163	8163		848;849		1
KGQPSSAEPEDAAGSR	GlyGly (K)	1699.7762	0.77615466	1149	sp|Q03169|TNAP2_HUMAN	yes	yes	0	0	1	0	1		1				1	1			17.63	17.63	3	0.0043599	2701	20190821_JH_MUT_Ubi	77.13	45.302	8923900	0	2642000	0	0	0	4461100	1820800	0	0			2684	1149	2358	7763;7764;7765	8164;8165;8166	8164		1148		3
KGQSPLDLCPDPNLCK	GlyGly (K)	1954.9241	0.92408123	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1		1				1	1			33.227	33.227	3	0.0072619	8013	20190902_JH_MUT_Ubi_3	72.523	36.501	6070900	0	1461200	0	0	0	2512800	2096900	0	0			2685	1570	2359	7766;7767;7768	8167;8168;8169	8169		1557;1559		3
KGSITEYTAAEEK	GlyGly (K)	1539.7417	0.74166663	1205	sp|Q12982|BNIP2_HUMAN;sp|Q12982-2|BNIP2_HUMAN	yes	no	0	0	1	0	1								1		23.198	23.198	3	0.0084416	5996	20190902_JH_WT_Ubi_2	83.243	48.548	1423800	0	0	0	0	0	0	0	1423800	0			2686	1205	2360	7769	8170	8170		1273		1
KGTYLTDETHR	GlyGly (K)	1433.6899	0.68990583	571	sp|P15529-15|MCP_HUMAN;sp|P15529-12|MCP_HUMAN;sp|P15529-14|MCP_HUMAN;sp|P15529-11|MCP_HUMAN;sp|P15529-13|MCP_HUMAN;sp|P15529-10|MCP_HUMAN;sp|P15529|MCP_HUMAN	yes	no	0	0	1	0	1									1	18.241	18.241	2	0.015699	4490	20190902_JH_WT_Ubi_3	100.69	39.127	634010	0	0	0	0	0	0	0	0	634010			2687	571	2361	7770	8171	8171		561		0
KGVPIIFADELDDSKPPPSSSMPLILQEEK	Oxidation (M);GlyGly (K)	3409.7327	0.73268844	1273	sp|Q14118|DAG1_HUMAN	yes	yes	0	0	1	1	2	1									43.334	43.334	4	9.8462E-13	11446	20190821_JH_EV_Ubi	111.09	87.346	5305100	5305100	0	0	0	0	0	0	0	0			2688	1273	2362	7771	8172	8172		1336;1337	790	1
KHEAFESDLAAHQDR	Unmodified	1752.818	0.81795989	214;537	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|P35609-2|ACTN2_HUMAN;sp|P35609|ACTN2_HUMAN;sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	no	no	0	0	0	0	1								1	1	20.567	20.567	4	0.001318	5195	20190902_JH_WT_Ubi_2	88.706	62.271	8793500	0	0	0	0	0	0	0	5295100	3498400			2689	214;537	2363	7772;7773	8173;8174	8173				2
KHEDFEKSLSAQEEK	GlyGly (K)	1917.9068	0.90683448	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	1	0	2						1				20.226	20.226	4	0.027557	4476	20190902_JH_MUT_Ubi_2	50.305	18.666	1022600	0	0	0	0	0	1022600	0	0	0			2690	1262	2364	7774	8175	8175		1327		1
KHPGGGESDASPEAGSGGGGVALK	GlyGly (K)	2235.0516	0.051601238	2129	sp|Q9UHI5|LAT2_HUMAN	yes	yes	0	0	1	0	1	1								1	20.771	20.771	3;4	2.284E-09	5164	20190902_JH_WT_Ubi_3	113.36	66.845	4887900	3839700	0	0	0	0	0	0	0	1048300			2691	2129	2365	7775;7776	8176;8177	8177		2001		2
KHPWQSELLRK	GlyGly (K);Deamidation (NQ)	1535.8209	0.82086043	1466	sp|Q68DU8|KCD16_HUMAN	yes	yes	0	1	1	0	2	1									31.407	31.407	3	0.034876	6984	20190821_JH_EV_Ubi	72.289	15.333	1759900	1759900	0	0	0	0	0	0	0	0			2692	1466	2366	7777	8178	8178	1081			0
KIEDNNTLVFIVDVK	Unmodified	1745.9564	0.95635086	1056	sp|P62750|RL23A_HUMAN	yes	yes	0	0	0	0	1			1							42.197	42.197	3	0.010097	10849	20190821_JH_WT_Ubi	73.834	34.857	0	0	0	0	0	0	0	0	0	0			2693	1056	2367	7778	8179	8179				1
KIHEQGLIAILDVEPQALK	GlyGly (K)	2228.2529	0.25286723	161	sp|O14936-5|CSKP_HUMAN;sp|O14936-3|CSKP_HUMAN;sp|O14936-4|CSKP_HUMAN;sp|O14936-6|CSKP_HUMAN;sp|O14936-2|CSKP_HUMAN;sp|O14936|CSKP_HUMAN	yes	no	0	0	1	0	1	1	1	1							42.311	42.311	4	0.00058035	10826	20190821_JH_WT_Ubi	79.837	56.154	8794100	1774400	2080600	4939000	0	0	0	0	0	0			2694	161	2368	7779;7780;7781	8180;8181;8182	8182		134		3
KIITKLCDK	2 GlyGly (K)	1345.7388	0.73877028	1591	sp|Q8IYR2|SMYD4_HUMAN	yes	yes	0	0	2	0	2								1		43.235	43.235	2	0.018602	12931	20190902_JH_WT_Ubi_2	87.476	28.8	0	0	0	0	0	0	0	0	0	0			2695	1591	2369	7782	8183	8183		1586;1587		1
KIQALQQQADEAEDR	GlyGly (K)	1855.9024	0.90241781	1092	sp|P67936|TPM4_HUMAN	yes	yes	0	0	1	0	1		1	1					1	1	24.636	24.636	3	7.0769E-05	4127	20190821_JH_MUT_Ubi	118.52	83.463	7611000	0	991560	2164100	0	0	0	0	2536300	1919000			2696	1092	2370	7783;7784;7785;7786	8184;8185;8186;8187	8184		1088		4
KKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE	Unmodified	4005.3218	0.32178297	488	sp|P09429|HMGB1_HUMAN	yes	yes	0	0	0	0	2			1						1	26.673	26.673	3	4.0866E-17	5235	20190821_JH_WT_Ubi	134.63	124.58	1310600	0	0	0	0	0	0	0	0	1310600			2697	488	2371	7787;7788	8188;8189;8190	8188				3
KKMQEINNQK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	1392.6555	0.65549416	1324	sp|Q15058|KIF14_HUMAN	yes	yes	0	3	1	1	2				1						29.299	29.299	2	0.034255	6703	20190902_JH_EV_Ubi_2	50.607	9.0669	0	0	0	0	0	0	0	0	0	0			2698	1324	2372	7789	8191	8191	423;424;1039;1040			1
KKPTPIQLNPAPDGSAVNGTSSAETNLEALQK	Deamidation (NQ)	3276.6838	0.68376441	1141	sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN	yes	no	0	1	0	0	2			1		1			1		35.883	35.883	4	0.00078141	8779	20190902_JH_EV_Ubi_3	54.934	22.427	12162000	0	0	6710900	0	845490	0	0	4605800	0			2699	1141	2373	7790;7791;7792	8192;8193;8194	8192	371;372			3
KKQGALEDQIMQANTILEAFGNAK	2 GlyGly (K);3 Deamidation (NQ)	2848.3913	0.39128756	2208	sp|Q9Y2K3|MYH15_HUMAN	yes	yes	0	3	2	0	2		1								39.574	39.574	3	0.028497	9323	20190821_JH_MUT_Ubi	40.369	8.3932	1687900	0	1687900	0	0	0	0	0	0	0			2700	2208	2374	7793	8195	8195	703;1330;1331	2063;2064		1
KKSSTVPSSNTASGGMTR	Oxidation (M);GlyGly (K)	1924.9273	0.92725235	696	sp|P27448-8|MARK3_HUMAN;sp|P27448-6|MARK3_HUMAN;sp|P27448-3|MARK3_HUMAN;sp|P27448-4|MARK3_HUMAN;sp|P27448-2|MARK3_HUMAN;sp|P27448|MARK3_HUMAN;sp|P27448-7|MARK3_HUMAN	yes	no	0	0	1	1	2								1		52.889	52.889	3	0.016795	15748	20190902_JH_WT_Ubi_2	67.646	17.653	1089300	0	0	0	0	0	0	0	1089300	0			2701	696	2375	7794	8196	8196		683;684	438	1
KLDEAVAEAHLGK	Unmodified	1379.7409	0.74087877	665	sp|P23526-2|SAHH_HUMAN;sp|P23526|SAHH_HUMAN	yes	no	0	0	0	0	1		1	1					1		25.014	25.014	3	3.5852E-06	6636	20190902_JH_WT_Ubi_2	122.1	77.267	0	0	0	0	0	0	0	0	0	0			2702	665	2376	7795;7796;7797	8197;8198;8199	8199				3
KLDLFANVVHVK	Unmodified	1381.8082	0.80817048	223	sp|O43837|IDH3B_HUMAN;sp|O43837-2|IDH3B_HUMAN	yes	no	0	0	0	0	1			1				1			34.948	34.948	3	1.8108E-05	8121	20190821_JH_WT_Ubi	139.76	103.08	3943900	0	0	3165300	0	0	0	778580	0	0			2703	223	2377	7798;7799	8200;8201	8201				1
KLDSLTTSFGFPVGAATLVDEVGVDVAK	Unmodified	2835.4906	0.4905909	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	1			1							53.553	53.553	3	8.1548E-05	15234	20190821_JH_WT_Ubi	78.3	59.202	6637900	0	0	6637900	0	0	0	0	0	0			2704	818	2378	7800	8202	8202				1
KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK	Oxidation (M)	3571.6963	0.69631971	751	sp|P31949|S10AB_HUMAN	yes	yes	0	0	0	1	1		1								56.292	56.292	4	0.00035214	14977	20190821_JH_MUT_Ubi	54.419	36.219	2988500	0	2988500	0	0	0	0	0	0	0			2705	751	2379	7801	8203	8203			471	1
KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK	Oxidation (M);Deamidation (NQ)	3572.6803	0.68033529	751	sp|P31949|S10AB_HUMAN	yes	yes	0	1	0	1	1								1		57.174	57.174	4	0.012066	16695	20190902_JH_WT_Ubi_2	56.366	13.912	1139800	0	0	0	0	0	0	0	1139800	0			2706	751	2379	7802	8204	8204	264		471	1
KLEEEQIILEDQNCK	Unmodified	1887.9248	0.92479273	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	1	1		1	1	1			1	1	31.1	31.1	3	3.2936E-08	6680	20190821_JH_WT_Ubi	145.7	77.736	41024000	2147500	0	12423000	0	1902300	0	0	13296000	11256000			2707	776	2380	7803;7804;7805;7806;7807;7808	8205;8206;8207;8208;8209;8210	8208				6
KLEEEQIILEDQNCK	Deamidation (NQ)	1888.9088	0.90880832	776	sp|P35579|MYH9_HUMAN	yes	yes	0	1	0	0	1								1		32.623	32.623	3	0.017049	9281	20190902_JH_WT_Ubi_2	68.283	7.8497	2921900	0	0	0	0	0	0	0	2921900	0			2708	776	2380	7809	8211	8211	903			1
KLEEIIHQITNVEALIAR	Unmodified	2089.1895	0.18953869	1319	sp|Q15042-4|RB3GP_HUMAN;sp|Q15042|RB3GP_HUMAN;sp|Q15042-3|RB3GP_HUMAN	yes	no	0	0	0	0	1	1									49.264	49.264	3	5.5389E-11	13381	20190821_JH_EV_Ubi	141.85	111.52	1195500	1195500	0	0	0	0	0	0	0	0			2709	1319	2381	7810	8212	8212				1
KLEENNHK	GlyGly (K);Deamidation (NQ)	1125.5415	0.54145068	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	1	1	0	1		1								0.18928	0.18928	3	0.033643	33	20190821_JH_MUT_Ubi	80.455	23.734	382300	0	382300	0	0	0	0	0	0	0			2710	1260	2382	7811	8213	8213	407	1323;1325		1
KLETAVNLAWTAGNSNTR	Unmodified	1945.0017	0.0017379196	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	0	1	1	1	1		1		1	1	1	34.763	34.763	3	9.7739E-20	7944	20190821_JH_WT_Ubi	160.43	108.06	54273000	6849400	3986300	24023000	0	1530700	0	2312200	9143300	6427800			2711	640	2383	7812;7813;7814;7815;7816;7817;7818	8214;8215;8216;8217;8218;8219;8220	8218				7
KLEVNEAELLR	GlyGly (K)	1426.778	0.77799256	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	0	1						1		1	1	32.259	32.259	3	0.0012256	8811	20190902_JH_WT_Ubi_3	117.98	51.38	11601000	0	0	0	0	0	1825400	0	5051300	4724100			2712	1476	2384	7819;7820;7821	8221;8222;8223	8223		1488		3
KLFETQESGDLNEELVK	GlyGly (K)	2092.0324	0.032428926	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1							1			34.554	34.554	3	5.6609E-06	8574	20190902_JH_MUT_Ubi_3	121.27	54.83	2592200	0	0	0	0	0	0	2592200	0	0			2713	1570	2385	7822	8224	8224		1560;1561		1
KLKGTEDELDK	2 GlyGly (K)	1502.7577	0.75765105	1093	sp|P67936-2|TPM4_HUMAN;sp|P09493-9|TPM1_HUMAN;sp|P09493-4|TPM1_HUMAN;sp|P09493-3|TPM1_HUMAN;sp|P09493-10|TPM1_HUMAN;sp|P09493|TPM1_HUMAN;sp|P06753|TPM3_HUMAN	yes	no	0	0	2	0	2			1							27.773	27.773	2	0.025344	5635	20190821_JH_WT_Ubi	61.56	16.538	1200600	0	0	1200600	0	0	0	0	0	0			2714	1093	2386	7823	8225	8225		1091;1092		0
KLLEGEECR	GlyGly (K)	1246.5976	0.59758535	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446	no	no	0	0	1	0	1		1				1	1			20.02	20.02	3	0.0087776	3131	20190821_JH_MUT_Ubi	90.827	45.805	2315900	0	0	0	0	0	2315900	0	0	0		+	2715	3	2387	7824;7825;7826	8226;8227;8228	8226		4		3
KLLLDPSSPPTK	GlyGly (K)	1408.7926	0.79257999	1471	sp|Q6IAA8|LTOR1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1	1	1	29.191	29.191	3	0.00044385	6106	20190821_JH_WT_Ubi	122.55	74.433	89795000	5194400	5788700	13553000	5409500	0	11181000	14742000	19735000	14191000			2716	1471	2388	7827;7828;7829;7830;7831;7832;7833;7834	8229;8230;8231;8232;8233;8234;8235;8236	8234		1482;1483		8
KLPIDVTEGEVISLGLPFGK	Unmodified	2111.1878	0.18780736	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	1	1	1	1				1			51.354	51.354	3	8.515E-05	13672	20190821_JH_MUT_Ubi	97.502	53.457	9196800	2475800	2077200	4005400	0	0	0	638470	0	0			2717	690	2389	7835;7836;7837;7838	8237;8238;8239;8240;8241	8238				5
KLPPLPLTLALGAFLNHR	Unmodified	1970.1829	0.18293717	370	sp|O96008|TOM40_HUMAN	yes	yes	0	0	0	0	1			1							51.926	51.926	3	0.00041545	14664	20190821_JH_WT_Ubi	94.569	80.178	6940800	0	0	6940800	0	0	0	0	0	0			2718	370	2390	7839	8242	8242				1
KLQEEELLATQVDMR	Oxidation (M);GlyGly (K)	1931.9622	0.96224087	1575	sp|Q8IVM0|CCD50_HUMAN;sp|Q8IVM0-2|CCD50_HUMAN	yes	no	0	0	1	1	1		1				1	1			32.912	32.912	3	1.0714E-05	8382	20190902_JH_MUT_Ubi_2	125.47	83.643	7395200	0	1806200	0	0	0	2429400	3159600	0	0			2719	1575	2391	7840;7841;7842	8243;8244;8245	8244		1573	931	3
KLQPAQTAAKNLIIFLGDGMGVSTVTAAR	Oxidation (M)	2986.6274	0.62737592	424	sp|P10696|PPBN_HUMAN;sp|P05187|PPB1_HUMAN	yes	no	0	0	0	1	2	1									44.188	44.188	4	0.00047736	11770	20190821_JH_EV_Ubi	60.95	38.827	1538000	1538000	0	0	0	0	0	0	0	0			2720	424	2392	7843	8246	8246			217	1
KLQVYEGGGQPPPQDLPGSPK	GlyGly (K);Deamidation (NQ)	2306.1543	0.1542754	1566	sp|Q86Y91-2|KI18B_HUMAN;sp|Q86Y91-3|KI18B_HUMAN;sp|Q86Y91|KI18B_HUMAN;sp|Q86Y91-4|KI18B_HUMAN	yes	no	0	1	1	0	1								1		54.989	54.989	3	0.010093	16335	20190902_JH_WT_Ubi_2	63.443	7.5311	1583400	0	0	0	0	0	0	0	1583400	0			2721	1566	2393	7844	8247	8247	1117	1550		1
KLTPITYPQGLAMAK	Oxidation (M);GlyGly (K)	1760.9495	0.94949134	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	1	1	1		1					1			32.866	32.866	3	0.0047453	7084	20190821_JH_MUT_Ubi	76.01	47.377	7168500	0	2849900	0	0	0	0	4318600	0	0			2722	1075	2394	7845;7846	8248;8249	8248		1059;1060	660	1
KLTPITYPQGLAMAKEIGAVK	Oxidation (M);GlyGly (K)	2358.2981	0.29810286	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	1	1	2		1				1	1		1	35.482	35.482	3	6.7361E-08	8120	20190821_JH_MUT_Ubi	115.38	90.592	8621900	0	2247400	0	0	0	3642000	1650500	0	1082000			2723	1075	2395	7847;7848;7849;7850	8250;8251;8252;8253	8250		1059;1060	660	4
KLTPITYPQGLAMAKEIGAVK	GlyGly (K)	2342.3032	0.30318824	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	1	0	2		1	1							39.988	39.988	3	2.9977E-07	9559	20190821_JH_MUT_Ubi	113.49	81.688	2982600	0	1675300	1307200	0	0	0	0	0	0			2724	1075	2395	7851;7852	8254;8255;8256	8254		1059;1060		3
KMASFQGTVTCEAPNSR	Unmodified	1882.8666	0.86656635	243	sp|O60423-1|AT8B3_HUMAN;sp|O60423|AT8B3_HUMAN;sp|O60423-3|AT8B3_HUMAN	yes	no	0	0	0	0	1			1							48.003	48.003	2	0.0045212	13232	20190821_JH_WT_Ubi	86.014	21.194	6399900	0	0	6399900	0	0	0	0	0	0			2725	243	2396	7853	8257	8257				1
KMEDSVGCLETAEEVK	Oxidation (M)	1839.823	0.82302978	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	1	1								1		28.35	28.35	3	0.004008	7758	20190902_JH_WT_Ubi_2	84.046	40.863	3664500	0	0	0	0	0	0	0	3664500	0			2726	776	2397	7854	8258	8258			490	1
KMITNNPHLQK	GlyGly (K);2 Deamidation (NQ)	1438.7238	0.7238485	1443	sp|Q5T848|GP158_HUMAN	yes	yes	0	2	1	0	1						1				33.283	33.283	2	0.035568	8588	20190902_JH_MUT_Ubi_2	41.448	11.639	0	0	0	0	0	0	0	0	0	0			2727	1443	2398	7855	8259	8259	455;456;1073			1
KMNLIQSLNK	2 GlyGly (K);Deamidation (NQ)	1416.7395	0.73949856	1442	sp|Q5T7W0-2|ZN618_HUMAN;sp|Q5T7W0-4|ZN618_HUMAN;sp|Q5T7W0|ZN618_HUMAN	yes	no	0	1	2	0	1	1									20.077	20.077	3	0.023233	3425	20190821_JH_EV_Ubi	64.73	6.5973	142190000	142190000	0	0	0	0	0	0	0	0			2728	1442	2399	7856	8260	8260	1072	1457;1458		1
KMVEEVFDVLYSEALGR	GlyGly (K)	2098.0405	0.040491191	2131	sp|Q9UHL9-2|GT2D1_HUMAN;sp|Q9UHL9|GT2D1_HUMAN;sp|Q9UHL9-3|GT2D1_HUMAN	yes	no	0	0	1	0	1							1			36.82	36.82	3	0.019573	9347	20190902_JH_MUT_Ubi_3	60.631	15.196	0	0	0	0	0	0	0	0	0	0			2729	2131	2400	7857	8261	8261		2002		1
KNGAAKQSNPK	2 GlyGly (K);3 Deamidation (NQ)	1372.6583	0.65827136	808	sp|P40222|TXLNA_HUMAN	yes	yes	0	3	2	0	2		1								21.775	21.775	2	0.022664	3386	20190821_JH_MUT_Ubi	66.692	7.7112	0	0	0	0	0	0	0	0	0	0			2730	808	2401	7858	8262	8262	283;284;912	785;786		1
KNGNGGPGPYVGQAGTATLPR	GlyGly (K);2 Deamidation (NQ)	2127.0345	0.034494611	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN	yes	no	0	2	1	0	1						1	1			32.169	32.169	3	0.00069113	7917	20190902_JH_MUT_Ubi_2	81.878	41.691	2735500	0	0	0	0	0	1201900	1533600	0	0			2731	257	2402	7859;7860	8263;8264	8263	88;89	240		2
KNHEEEISTLR	GlyGly (K)	1468.727	0.72701962	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	0	1	1	1	1	1		1		1	1	19.146	19.146	3	0.00095511	4183	20190902_JH_MUT_Ubi_2	123.26	83.189	91215000	3811900	13828000	8225800	6465700	0	18084000	0	17668000	23132000		+	2732	7;477	2403	7861;7862;7863;7864;7865;7866;7867	8265;8266;8267;8268;8269;8270;8271	8268		17		7
KNIFVKEEQELPPK	2 GlyGly (K);Deamidation (NQ)	1927.0051	0.005091963	344	sp|O95447|LCA5L_HUMAN	yes	yes	0	1	2	0	2								1		9.9925	9.9925	4	0.033527	2305	20190902_JH_WT_Ubi_2	42.209	14.946	1624300	0	0	0	0	0	0	0	1624300	0			2733	344	2404	7868	8272	8272	109			0
KNKITMIAEPLEK	2 GlyGly (K)	1741.9397	0.93965493	1317	sp|Q15029-2|U5S1_HUMAN;sp|Q15029-3|U5S1_HUMAN;sp|Q15029|U5S1_HUMAN	yes	no	0	0	2	0	2	1									44.066	44.066	2	0.024155	11714	20190821_JH_EV_Ubi	57.492	13.722	5697600	5697600	0	0	0	0	0	0	0	0			2734	1317	2405	7869	8273	8273		1376;1377;1378		0
KNLPVTGPQAPTIK	GlyGly (K)	1576.8937	0.89369102	917	sp|P51170|SCNNG_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			28.395	28.395	3	0.0014861	6369	20190902_JH_EV_Ubi_2	101.61	67.64	43762000	5282600	4893300	0	8643900	12083000	6599400	6259300	0	0			2735	917	2406	7870;7871;7872;7873;7874;7875	8274;8275;8276;8277;8278;8279	8275		882		6
KNNKPEVNQIANSDNK	2 GlyGly (K);3 Deamidation (NQ)	2042.9505	0.95049021	1134	sp|Q01668-4|CAC1D_HUMAN;sp|Q01668-3|CAC1D_HUMAN;sp|Q01668|CAC1D_HUMAN;sp|Q01668-2|CAC1D_HUMAN	yes	no	0	3	2	0	2					1					43.649	43.649	2	0.036207	11098	20190902_JH_EV_Ubi_3	46.706	15.878	0	0	0	0	0	0	0	0	0	0			2736	1134	2407	7876	8280	8280	369;370			1
KNNLTLDQPQDK	GlyGly (K);3 Deamidation (NQ)	1529.7209	0.72093119	1730	sp|Q92844-2|TANK_HUMAN;sp|Q92844-3|TANK_HUMAN;sp|Q92844|TANK_HUMAN	yes	no	0	3	1	0	1			1							26.557	26.557	2	0.028997	5270	20190821_JH_WT_Ubi	85.963	8.6846	1779100	0	0	1779100	0	0	0	0	0	0			2737	1730	2408	7877	8281	8281	562;563;1179	1725		0
KNVLVIGTTGSQTTFLPEGELPECAR	GlyGly (K)	2930.4808	0.48077127	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN	yes	no	0	0	1	0	1		1								42.989	42.989	3	0.03426	10676	20190821_JH_MUT_Ubi	40.285	13.204	0	0	0	0	0	0	0	0	0	0			2738	1446	2409	7878	8282	8282				1
KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR	Oxidation (M)	3286.6809	0.68086806	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN	yes	no	0	0	0	1	1			1					1	1	45.989	45.989	3	1.3225E-06	13371	20190902_JH_WT_Ubi_3	76.109	50.782	17591000	0	0	7232400	0	0	0	0	4947000	5411900			2739	2005	2410	7879;7880;7881	8283;8284;8285;8286;8287	8286			1081	5
KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR	Unmodified	3270.686	0.68595344	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN	yes	no	0	0	0	0	1								1	1	48.621	48.621	3	2.5274E-05	14213	20190902_JH_WT_Ubi_3	72.469	51.745	2725200	0	0	0	0	0	0	0	729900	1995300			2740	2005	2410	7882;7883	8288;8289;8290	8290				3
KPADDQDPIDALSGDLDSCPSTTETSQNTAK	Unmodified	3276.4576	0.4575888	632	sp|P20810-3|ICAL_HUMAN;sp|P20810-4|ICAL_HUMAN;sp|P20810-8|ICAL_HUMAN;sp|P20810-2|ICAL_HUMAN;sp|P20810|ICAL_HUMAN;sp|P20810-9|ICAL_HUMAN;sp|P20810-5|ICAL_HUMAN;sp|P20810-10|ICAL_HUMAN;sp|P20810-7|ICAL_HUMAN;sp|P20810-6|ICAL_HUMAN	yes	no	0	0	0	0	1								1	1	39.504	39.504	3	7.2299E-11	11755	20190902_JH_WT_Ubi_2	101.2	78.999	3275000	0	0	0	0	0	0	0	1616900	1658000			2741	632	2411	7884;7885	8291;8292	8291				2
KPATPAEDDEDDDIDLFGSDNEEEDK	Unmodified	2908.1894	0.18939567	717	sp|P29692|EF1D_HUMAN;sp|P29692-2|EF1D_HUMAN;sp|P29692-3|EF1D_HUMAN;sp|P29692-4|EF1D_HUMAN	yes	no	0	0	0	0	1								1	1	37.247	37.247	3	4.3397E-26	10503	20190902_JH_WT_Ubi_3	151.45	107.27	17467000	0	0	0	0	0	0	0	9318400	8148300			2742	717	2412	7886;7887	8293;8294;8295	8294				3
KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR	GlyGly (K)	3690.5929	0.59289631	717	sp|P29692|EF1D_HUMAN;sp|P29692-2|EF1D_HUMAN;sp|P29692-3|EF1D_HUMAN;sp|P29692-4|EF1D_HUMAN	yes	no	0	0	1	0	2				1						37.196	37.196	4	3.8269E-08	9175	20190902_JH_EV_Ubi_2	90.166	74.141	3329400	0	0	0	3329400	0	0	0	0	0			2743	717	2413	7888	8296	8296		696		1
KPDREEIQMSNMGSNTK	2 Oxidation (M);GlyGly (K)	2109.9419	0.94191613	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	0	1	2	2	1	1		1	1	1	1			16.768	16.768	3;4	5.2704E-33	3725	20190902_JH_MUT_Ubi_2	187	152.15	13287000	1662800	858410	0	2448200	3960700	2610500	1746600	0	0			2744	257	2414	7889;7890;7891;7892;7893;7894	8297;8298;8299;8300;8301;8302;8303	8301		236;241	108;109	7
KPDREEIQMSNMGSNTK	Oxidation (M);GlyGly (K)	2093.947	0.94700151	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN	yes	no	0	0	1	1	2						1	1			19.161	19.161	3	4.2811E-05	4237	20190902_JH_MUT_Ubi_2	117.13	85.331	1920300	0	0	0	0	0	829920	1090300	0	0			2745	257	2414	7895;7896	8304;8305;8306	8305		236;241	108;109	3
KPDTIEVQQMKAQAR	Oxidation (M);GlyGly (K)	1871.9523	0.95234489	686;568;773	sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-4|RADI_HUMAN;sp|P15311|EZRI_HUMAN	no	no	0	0	1	1	2						1		1		19.633	19.633	3	0.0019465	4274	20190902_JH_MUT_Ubi_2	103.3	48.698	1896200	0	0	0	0	0	1163600	0	732640	0			2746	686;773;568	2415	7897;7898	8307;8308	8307		560	356	2
KPEDVLDDDDAGSAPLKSSGQHQNDK	GlyGly (K)	2879.3169	0.31693664	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	0	1	0	2	2	2	1	1	2	1	1	1	1	25.051	25.051	3;4	1.7878E-75	5364	20190902_JH_EV_Ubi_3	214.95	180.79	349470000	28250000	14020000	50366000	40954000	32785000	29268000	24045000	72663000	57123000			2747	778	2416	7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910	8309;8310;8311;8312;8313;8314;8315;8316;8317;8318;8319;8320	8313		764;765		12
KPEDVLDDDDAGSAPLKSSGQHQNDK	GlyGly (K);Deamidation (NQ)	2880.301	0.30095223	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	1	1	0	2				1		2	1	1	1	25.689	25.689	3;4	3.0229E-12	7140	20190902_JH_WT_Ubi_2	114.19	92.066	45942000	0	0	0	3848300	0	6025300	5299200	19876000	10893000			2748	778	2416	7911;7912;7913;7914;7915;7916	8321;8322;8323;8324;8325;8326	8325	277;905;906	764;765		6
KPEDWDEEMDGEWEPPVIQNPEYK	Oxidation (M)	2975.2807	0.28073406	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	1	1			1					1	1	41.65	41.65	3	0.00036831	12460	20190902_JH_WT_Ubi_2	78.531	59.971	16894000	0	0	8741400	0	0	0	0	4710200	3442500			2749	702	2417	7917;7918;7919	8327;8328;8329	8328			444	3
KPEDWDEEMDGEWEPPVIQNPEYK	Unmodified	2959.2858	0.28581943	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	0	1			1							44.563	44.563	3	0.0072784	11860	20190821_JH_WT_Ubi	57.768	39.208	4772200	0	0	4772200	0	0	0	0	0	0			2750	702	2417	7920	8330	8330				1
KPENDDDVEIKK	GlyGly (K)	1542.7526	0.75256567	1237	sp|Q13433-2|S39A6_HUMAN;sp|Q13433|S39A6_HUMAN	yes	no	0	0	1	0	2	1								1	17.423	17.423	3	0.016303	2934	20190821_JH_EV_Ubi	109.16	38.43	8237400	3065900	0	0	0	0	0	0	0	5171500			2751	1237	2418	7921;7922	8331;8332	8331		1300		2
KPEPQVLAALLHALPLK	Unmodified	1837.1189	0.11893993	1687	sp|Q8TEX9|IPO4_HUMAN;sp|Q8TEX9-2|IPO4_HUMAN	yes	no	0	0	0	0	1	1									47.784	47.784	3	9.2576E-53	12983	20190821_JH_EV_Ubi	213.52	194.7	4820400	4820400	0	0	0	0	0	0	0	0			2752	1687	2419	7923	8333	8333				1
KPIEDPANDTVDFPK	GlyGly (K)	1798.8737	0.87374344	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	1		1		1	1	1		1	1	31.561	31.561	3	1.4454E-07	7801	20190902_JH_MUT_Ubi_2	139.77	83.202	32377000	0	4524500	0	2766300	2709000	5399000	0	8215600	8762600			2753	257	2420	7924;7925;7926;7927;7928;7929	8334;8335;8336;8337;8338;8339	8337		238;239		6
KPIEDPANDTVDFPKR	GlyGly (K)	1954.9749	0.97485447	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	2						1	1			27.308	27.308	3	1.1867E-05	6428	20190902_JH_MUT_Ubi_2	122.96	67.861	5832600	0	0	0	0	0	2078800	3753800	0	0			2754	257	2421	7930;7931	8340;8341	8340		238;239		2
KPLHLLDCIHVLLIR	Unmodified	1839.0917	0.091679321	301	sp|O75694-2|NU155_HUMAN;sp|O75694|NU155_HUMAN	yes	no	0	0	0	0	1			1							42.489	42.489	4	0.01162	10994	20190821_JH_WT_Ubi	62.081	25.137	4185600	0	0	4185600	0	0	0	0	0	0			2755	301	2422	7932	8342	8342				1
KPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEK	GlyGly (K)	3858.9891	0.98911413	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	2	1	1					1			45.567	45.567	4	0.0021464	11849	20190821_JH_MUT_Ubi	47.304	28.516	33401000	5839000	23081000	0	0	0	0	4480600	0	0			2756	651	2423	7933;7934;7935	8343;8344;8345	8344		623;624;625		3
KPLPDHVSIVEPK	Unmodified	1457.8242	0.82421447	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	0	0	1	1							1	1	27.15	27.15	3	0.01119	7301	20190902_JH_WT_Ubi_2	81.565	42.004	5054500	936740	0	0	0	0	0	0	4117700	0			2757	662	2424	7936;7937;7938	8346;8347;8348	8347				3
KPLPDHVSIVEPKDEILPTTPISEQK	GlyGly (K)	3023.6179	0.61791668	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	1	0	2	1	1	1	1	1	1	1	1	1	36.186	36.186	4	5.3679E-10	10552	20190902_JH_WT_Ubi_2	101.16	83.943	181220000	9480200	21595000	39734000	5263100	6543000	29741000	21984000	23428000	23451000			2758	662	2425	7939;7940;7941;7942;7943;7944;7945;7946;7947	8349;8350;8351;8352;8353;8354;8355;8356;8357;8358	8357		632		10
KPLTSNCTIQIATPGK	Unmodified	1727.924	0.92400487	1325	sp|Q15061|WDR43_HUMAN	yes	yes	0	0	0	0	1	1									29.005	29.005	3	0.0084137	6080	20190821_JH_EV_Ubi	72.662	29.873	1559800	1559800	0	0	0	0	0	0	0	0			2759	1325	2426	7948	8359	8359				1
KPLVIIAEDVDGEALSTLVLNR	Unmodified	2364.3264	0.3264261	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	1			1							50.119	50.119	3	8.8578E-06	14022	20190821_JH_WT_Ubi	94.384	68.889	7587200	0	0	7587200	0	0	0	0	0	0			2760	515	2427	7949	8360	8360				1
KPLVLCGDLNVAHEEIDLR	Unmodified	2190.1467	0.1466876	700	sp|P27695|APEX1_HUMAN	yes	yes	0	0	0	0	1		1	1							38.046	38.046	3	0.00011559	9103	20190821_JH_WT_Ubi	100.39	75.195	6941100	0	1586500	5354600	0	0	0	0	0	0			2761	700	2428	7950;7951	8361;8362	8362				2
KPLVVFVLGGPGAGK	Unmodified	1437.8708	0.87077073	728	sp|P30085-2|KCY_HUMAN;sp|P30085|KCY_HUMAN	yes	no	0	0	0	0	1			1			1			1	38.571	38.571	3	0.0065506	10518	20190902_JH_MUT_Ubi_2	79.466	25.898	8654300	0	0	6047500	0	0	791560	0	0	1815300			2762	728	2429	7952;7953;7954	8363;8364;8365	8363				3
KPPGENDFDTIK	GlyGly (K);Deamidation (NQ)	1474.694	0.69398816	2206	sp|Q9Y2H9|MAST1_HUMAN	yes	yes	0	1	1	0	1									1	27.724	27.724	3	0.013295	7299	20190902_JH_WT_Ubi_3	72.531	13.266	1706100	0	0	0	0	0	0	0	0	1706100			2763	2206	2430	7955	8366	8366	702	2062		0
KPQADLKEVSPQK	GlyGly (K)	1580.8522	0.85222014	2030	sp|Q9NTG1|PKDRE_HUMAN	yes	yes	0	0	1	0	2		1								25.741	25.741	2	0.021352	4375	20190821_JH_MUT_Ubi	83.499	16.386	2136600	0	2136600	0	0	0	0	0	0	0			2764	2030	2431	7956	8367	8367		1929		0
KPQEEDSPGPSTSSVLK	GlyGly (K)	1898.9222	0.92215019	1859	sp|Q9BQE4|SELS_HUMAN	yes	yes	0	0	1	0	1		1								24.813	24.813	3	0.028477	4139	20190821_JH_MUT_Ubi	54.281	15.905	0	0	0	0	0	0	0	0	0	0			2765	1859	2432	7957	8368	8368		1811		1
KPSGLNGEASKSQEMVHLVNK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2383.1802	0.18017257	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	1	1	1	2		1	1	1	1			1	2	23.038	23.038	3;4	2.6365E-06	4327	20190821_JH_WT_Ubi	99.343	76.908	60523000	0	790850	9332600	4518900	2316200	0	0	21197000	22367000			2766	580	2433	7958;7959;7960;7961;7962;7963;7964	8369;8370;8371;8372;8373;8374;8375	8372	215;861	570;571	364	7
KPSGLNGEASKSQEMVHLVNK	GlyGly (K);Deamidation (NQ)	2367.1853	0.18525795	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	1	1	0	2			1					1	1	27.412	27.412	4	0.00016187	7482	20190902_JH_WT_Ubi_2	84.895	62.478	22067000	0	0	8296500	0	0	0	0	6914700	6855600			2767	580	2433	7965;7966;7967	8376;8377;8378	8377	215;861	570;571		3
KPYQLIAQDNETEK	GlyGly (K)	1789.8846	0.88464248	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	0	1			1					1		26.121	26.121	3	0.0057294	7059	20190902_JH_WT_Ubi_2	83.204	28.801	9915200	0	0	4190800	0	0	0	0	5724300	0			2768	836	2434	7968;7969	8379;8380	8380		804;805		2
KPYQLIAQDNETEKPIDSETK	2 GlyGly (K)	2674.3086	0.30860379	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	2	0	2	1			1	1				1	28.355	28.355	3;4	4.0189E-14	6374	20190902_JH_EV_Ubi_2	138.82	108.57	20704000	4838100	0	0	1693500	6844000	0	0	0	7328700			2769	836	2435	7970;7971;7972;7973	8381;8382;8383;8384	8382		804;805;806		4
KPYQLIAQDNETEKPIDSETK	GlyGly (K)	2560.2657	0.26567634	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	0	2				1		1			1	27.83	27.83	3	2.0615E-35	7318	20190902_JH_WT_Ubi_3	176.39	126.99	12170000	0	0	0	2485300	0	1635500	0	0	8049100			2770	836	2435	7974;7975;7976	8385;8386;8387	8387		804;805;806		3
KQAVGPGGVNSGPVQIVNNK	GlyGly (K)	2076.1076	0.10759997	1568	sp|Q86YD1-3|PTOV1_HUMAN;sp|Q86YD1-2|PTOV1_HUMAN;sp|Q86YD1|PTOV1_HUMAN	yes	no	0	0	1	0	1	1	1								28.775	28.775	3	2.5085E-05	5960	20190821_JH_EV_Ubi	105.89	66.881	1371900	833330	538600	0	0	0	0	0	0	0			2771	1568	2436	7977;7978	8388;8389	8388		1552		2
KQDEPIDLFMIEIMEMKHK	2 Oxidation (M);2 GlyGly (K);Deamidation (NQ)	2635.2332	0.2331957	809	sp|P40227-2|TCPZ_HUMAN;sp|P40227|TCPZ_HUMAN	yes	no	0	1	2	2	2			1							39.974	39.974	3	0.034845	9929	20190821_JH_WT_Ubi	42.913	7.2877	0	0	0	0	0	0	0	0	0	0			2772	809	2437	7979	8390	8390	913			1
KQELEEICHDLEAR	Unmodified	1768.8414	0.84139745	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	1			1					1	1	30.864	30.864	3	3.5893E-05	6568	20190821_JH_WT_Ubi	127.32	78.013	25671000	0	0	9832500	0	0	0	0	9658800	6179300			2773	776	2438	7980;7981;7982	8391;8392;8393	8391				3
KQELLEALTK	GlyGly (K);Deamidation (NQ)	1286.7082	0.70818166	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	1	1	0	1						1		1		44.896	44.896	2	0.025494	12917	20190902_JH_MUT_Ubi_2	67.563	12.581	2739100	0	0	0	0	0	1471200	0	1267900	0			2774	541	2439	7983;7984	8394;8395	8394	858	533		0
KQENKDEALPPPPPPEFCPAFSK	GlyGly (K)	2736.3218	0.32175143	1580	sp|Q8IWV7|UBR1_HUMAN	yes	yes	0	0	1	0	2	1	1			1					35.33	35.33	4	0.0082265	8487	20190902_JH_EV_Ubi_3	51.568	30.911	6405400	2242200	2250500	0	0	1912700	0	0	0	0			2775	1580	2440	7985;7986;7987	8396;8397;8398	8397		1579;1580		3
KQEREEAQR	2 Deamidation (NQ)	1174.5578	0.55782903	2080	sp|Q9P031|TAP26_HUMAN	yes	yes	0	2	0	0	2									1	23.868	23.868	2	0.030374	6162	20190902_JH_WT_Ubi_3	57.047	9.9656	50595000	0	0	0	0	0	0	0	0	50595000			2776	2080	2441	7988	8399	8399	1283;1284			0
KQEWIQAIHSTIHLLK	Unmodified	1944.0945	0.094516093	2120	sp|Q9UH65|SWP70_HUMAN	yes	yes	0	0	0	0	1		1	1			1				37.374	37.374	4	0.010693	8719	20190821_JH_MUT_Ubi	60.549	38.011	13221000	0	3038500	6896200	0	0	3286700	0	0	0			2777	2120	2442	7989;7990;7991	8400;8401;8402	8400				3
KQLLCGAAIGTHEDDK	GlyGly (K)	1868.9051	0.90506034	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	1	0	1		1				1				24.627	24.627	3	0.0037327	5500	20190902_JH_MUT_Ubi_2	79.652	44.448	2734900	0	647740	0	0	0	2087100	0	0	0			2778	533	2443	7992;7993	8403;8404	8404		528		2
KQNMILSDEAIKYK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1810.9135	0.91349976	1429	sp|Q5JRA6-4|TGO1_HUMAN;sp|Q5JRA6-2|TGO1_HUMAN;sp|Q5JRA6|TGO1_HUMAN	yes	no	0	1	1	1	2					1					22.603	22.603	3	0.021011	4800	20190902_JH_EV_Ubi_3	62.088	26.615	5070400	0	0	0	0	5070400	0	0	0	0			2779	1429	2444	7994	8405	8405	1068	1444	876	0
KQPPVSPGTALVGSQK	Unmodified	1592.8886	0.88860564	597	sp|P17096|HMGA1_HUMAN;sp|P17096-3|HMGA1_HUMAN	yes	no	0	0	0	0	1			1					1	1	26.02	26.02	3	0.00034072	6719	20190902_JH_WT_Ubi_3	106.3	79.162	19034000	0	0	4038200	0	0	0	0	7748600	7247500			2780	597	2445	7995;7996;7997	8406;8407;8408	8408				3
KQPPVSPGTALVGSQKEPSEVPTPK	GlyGly (K)	2671.4181	0.41809466	597	sp|P17096|HMGA1_HUMAN;sp|P17096-3|HMGA1_HUMAN	yes	no	0	0	1	0	2			1					1		30.015	30.015	4	0.0081074	6338	20190821_JH_WT_Ubi	49.528	32.777	7169600	0	0	2585500	0	0	0	0	4584100	0			2781	597	2446	7998;7999	8409;8410	8409		585		2
KQQADSNCGFAEEYEDLK	GlyGly (K)	2244.9593	0.95934034	1203	sp|Q12913|PTPRJ_HUMAN	yes	yes	0	0	1	0	1	1							1	1	31.239	31.239	3	0.00063054	6945	20190821_JH_EV_Ubi	87.088	63.526	6013900	749010	0	0	0	0	0	0	3395000	1869800			2782	1203	2447	8000;8001;8002	8411;8412;8413	8411		1268		3
KQQELMDENFDLSK	Oxidation (M);GlyGly (K)	1853.8465	0.84654241	1216	sp|Q13137-5|CACO2_HUMAN;sp|Q13137-2|CACO2_HUMAN;sp|Q13137|CACO2_HUMAN;sp|Q13137-3|CACO2_HUMAN;sp|Q13137-4|CACO2_HUMAN	yes	no	0	0	1	1	1						1	1			28.43	28.43	3	0.018681	6489	20190902_JH_MUT_Ubi_3	62.035	24.484	1559100	0	0	0	0	0	798030	761060	0	0			2783	1216	2448	8003;8004	8414;8415	8415		1281	767	2
KQQQQEGNYLQHVQLDQR	GlyGly (K)	2353.1523	0.15231834	1909	sp|Q9BYM8-3|HOIL1_HUMAN;sp|Q9BYM8|HOIL1_HUMAN	yes	no	0	0	1	0	1							1			25.965	25.965	4	0.017013	5768	20190902_JH_MUT_Ubi_3	49.066	28.509	2535000	0	0	0	0	0	0	2535000	0	0			2784	1909	2449	8005	8416	8416		1846		1
KQSVFSAPSLSAGASAAEPLDR	GlyGly (K)	2302.1553	0.15533803	1296	sp|Q14573|ITPR3_HUMAN	yes	yes	0	0	1	0	1			1							36.3	36.3	3	0.015068	8486	20190821_JH_WT_Ubi	52.273	19.585	9889300	0	0	9889300	0	0	0	0	0	0			2785	1296	2450	8006	8417	8417		1359		1
KQTESSFMAGDINSTPTLNR	Oxidation (M);GlyGly (K)	2326.0859	0.085937834	322	sp|O94910-2|AGRL1_HUMAN;sp|O94910|AGRL1_HUMAN	yes	no	0	0	1	1	1							1			29.848	29.848	3	0.022559	6961	20190902_JH_MUT_Ubi_3	52.432	26.194	0	0	0	0	0	0	0	0	0	0			2786	322	2451	8007	8418	8418		300	148	1
KQTIDNSQGAYQEAFDISK	GlyGly (K)	2256.0659	0.065854319	695	sp|P27348|1433T_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1	1	1	32.916	32.916	3	0.00023379	7038	20190821_JH_MUT_Ubi	93.269	57.94	12316000	1225200	1447800	0	804200	0	2064000	1903500	2261700	2609500			2787	695	2452	8008;8009;8010;8011;8012;8013;8014	8419;8420;8421;8422;8423;8424;8425	8421		680		6
KQYVQQPTDLSVDSVELTPMKK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	2779.3586	0.35859045	1582	sp|Q8IXS8|F126B_HUMAN	yes	yes	0	2	2	1	2			1							55.512	55.512	3	0.0066803	15946	20190821_JH_WT_Ubi	68.567	19.926	1113500	0	0	1113500	0	0	0	0	0	0			2788	1582	2453	8015	8426	8426	1127;1128	1581;1582;1583	934	1
KSCVEEPEPEPEAAEGDGDK	GlyGly (K)	2285.9594	0.95939992	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	24.127	24.127	3	2.2888E-18	5112	20190902_JH_MUT_Ubi_3	154.46	130.66	16029000	553980	1231100	2483500	1537200	1019300	1227500	1981000	4553700	1441900			2789	928	2454	8016;8017;8018;8019;8020;8021;8022;8023;8024	8427;8428;8429;8430;8431;8432;8433;8434;8435	8432		895		8
KSDFQVNLNNASR	GlyGly (K)	1605.7859	0.78593148	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	1		1				1	1			26.717	26.717	3	0.00025115	6169	20190902_JH_MUT_Ubi_2	121.56	66.297	12275000	0	2861600	0	0	0	5968900	3444600	0	0			2790	257	2455	8025;8026;8027	8436;8437;8438	8437		242		3
KSELVVEVKSDK	GlyGly (K)	1473.8039	0.80387296	839	sp|P43121|MUC18_HUMAN	yes	yes	0	0	1	0	2	1	1				1				21.63	21.63	3	1.0722E-06	3803	20190821_JH_EV_Ubi	150.14	75.444	5594000	1761600	1805700	0	0	0	2026800	0	0	0			2791	839	2456	8028;8029;8030	8439;8440;8441	8439		811;812		3
KSKVNLMQHMK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	1588.7701	0.77014677	2045	sp|Q9NVI1-2|FANCI_HUMAN;sp|Q9NVI1-1|FANCI_HUMAN;sp|Q9NVI1|FANCI_HUMAN	yes	no	0	2	2	1	2								1		29.597	29.597	3	0.030732	8179	20190902_JH_WT_Ubi_2	76.228	20.967	7166400	0	0	0	0	0	0	0	7166400	0			2792	2045	2457	8031	8442	8442	650;1278		1100	1
KSLLSHEFQDETDTEEETLYSSK	GlyGly (K)	2829.2828	0.28284255	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	1	0	1			1		1			1	1	34.12	34.12	4	2.4651E-06	9488	20190902_JH_WT_Ubi_3	94.188	71.967	29537000	0	0	11768000	0	2445100	0	0	7951900	7372200			2793	308	2458	8032;8033;8034;8035	8443;8444;8445;8446	8446		292;293		4
KSSTVSEDVEATVPMLQRTK	GlyGly (K)	2319.174	0.17402456	1579	sp|Q8IWT6|LRC8A_HUMAN	yes	yes	0	0	1	0	2			1							55.18	55.18	3	0.020687	15853	20190821_JH_WT_Ubi	72.207	24.265	2945400	0	0	2945400	0	0	0	0	0	0			2794	1579	2459	8036	8447	8447		1578		1
KSVSSPTSSNTPTPTK	GlyGly (K)	1731.8639	0.86390703	1431	sp|Q5M775-5|CYTSB_HUMAN;sp|Q5M775-3|CYTSB_HUMAN;sp|Q5M775-2|CYTSB_HUMAN;sp|Q5M775-4|CYTSB_HUMAN;sp|Q5M775|CYTSB_HUMAN	yes	no	0	0	1	0	1							1			18.943	18.943	3	0.010409	4051	20190902_JH_MUT_Ubi_3	68.978	17.366	1503500	0	0	0	0	0	0	1503500	0	0			2795	1431	2460	8037	8448	8448		1451		1
KTADIISEQKVSEFQEK	2 GlyGly (K);2 Deamidation (NQ)	2209.075	0.075022022	1902	sp|Q9BXT8-4|RNF17_HUMAN;sp|Q9BXT8-5|RNF17_HUMAN;sp|Q9BXT8|RNF17_HUMAN	yes	no	0	2	2	0	2		1								38.738	38.738	3	0.030827	9019	20190821_JH_MUT_Ubi	55.011	12.942	1283200	0	1283200	0	0	0	0	0	0	0			2796	1902	2461	8038	8449	8449	1231;1232			1
KTERLEVSYQGLDIENQR	Deamidation (NQ)	2178.0917	0.091675139	1408	sp|Q3V6T2-5|GRDN_HUMAN;sp|Q3V6T2-4|GRDN_HUMAN;sp|Q3V6T2-2|GRDN_HUMAN;sp|Q3V6T2-3|GRDN_HUMAN;sp|Q3V6T2|GRDN_HUMAN	yes	no	0	1	0	0	2								1		33.119	33.119	4	0.024905	9488	20190902_JH_WT_Ubi_2	55.864	15.685	5104300	0	0	0	0	0	0	0	5104300	0			2797	1408	2462	8039	8450	8450	1061			1
KTETMNVVMETNK	Oxidation (M);GlyGly (K)	1653.7702	0.77020634	534	sp|P12270|TPR_HUMAN	yes	yes	0	0	1	1	1				1						35.221	35.221	2	0.034106	8603	20190902_JH_EV_Ubi_2	48.998	6.6495	921510	0	0	0	921510	0	0	0	0	0			2798	534	2463	8040	8451	8451				0
KTETQEKNPLPSK	GlyGly (K)	1612.842	0.84204938	1050	sp|P62328|TYB4_HUMAN	yes	yes	0	0	1	0	2							1			17.132	17.132	3	0.028102	3683	20190902_JH_MUT_Ubi_3	98	58.419	1626400	0	0	0	0	0	0	1626400	0	0			2799	1050	2464	8041	8452	8452		1022;1023		1
KTETQEKNTLPTK	GlyGly (K)	1630.8526	0.85261407	12	CON__P21752;sp|P63313|TYB10_HUMAN	yes	no	0	0	1	0	2		1								16.323	16.323	3	0.0028273	2480	20190821_JH_MUT_Ubi	119.88	45.1	1281700	0	1281700	0	0	0	0	0	0	0		+	2800	12	2465	8042	8453	8453		36;37		1
KTPNAQEAEGQQTRAAAGR	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	2140.0257	0.025720839	1851	sp|Q9BPZ2|SPI2B_HUMAN;sp|Q99865|SPI2A_HUMAN	yes	no	1	1	1	0	2								1		20.72	20.72	3	0.022264	5185	20190902_JH_WT_Ubi_2	51.606	8.5823	8194500	0	0	0	0	0	0	0	8194500	0			2801	1851	2466	8043	8454	8454	592	1807		1
KTVQFSDDVQVETIEPEPEPAFIDEDK	GlyGly (K)	3218.5143	0.51429904	1721	sp|Q92783-2|STAM1_HUMAN;sp|Q92783|STAM1_HUMAN	yes	no	0	0	1	0	1							1			42.689	42.689	3	0.0020507	11254	20190902_JH_MUT_Ubi_3	60.171	10.426	1826700	0	0	0	0	0	0	1826700	0	0			2802	1721	2467	8044	8455	8455		1716		1
KVAQYSQQLNDLK	Deamidation (NQ)	1534.7991	0.79912193	72	sp|A2A2Z9|AN18B_HUMAN	yes	yes	0	1	0	0	1	1									39.875	39.875	2	0.016911	10116	20190821_JH_EV_Ubi	72.607	8.3831	3599800	3599800	0	0	0	0	0	0	0	0			2803	72	2468	8045	8456	8456	735;736			0
KVASMMESK	Oxidation (M)	1025.4886	0.48855218	1644	sp|Q8NDM7-2|CFA43_HUMAN;sp|Q8NDM7|CFA43_HUMAN	yes	no	0	0	0	1	1			1							19.47	19.47	2	0.025263	3553	20190821_JH_WT_Ubi	63.534	18.199	586800	0	0	586800	0	0	0	0	0	0			2804	1644	2469	8046	8457	8457			952;953	0
KVDIAGIYPPVTTPFTATAEVDYGK	Unmodified	2652.3687	0.36868485	1564	sp|Q86XE5-3|HOGA1_HUMAN;sp|Q86XE5|HOGA1_HUMAN	yes	no	0	0	0	0	1	1									47.378	47.378	3	0.0025036	12868	20190821_JH_EV_Ubi	79.426	57.186	0	0	0	0	0	0	0	0	0	0			2805	1564	2470	8047	8458	8458				1
KVEEAEPEEFVVEK	Unmodified	1660.8196	0.8195826	1222	sp|Q13185|CBX3_HUMAN	yes	yes	0	0	0	0	1								1		30.372	30.372	3	0.0015244	8486	20190902_JH_WT_Ubi_2	103.14	33.785	6933900	0	0	0	0	0	0	0	6933900	0			2806	1222	2471	8048	8459	8459				1
KVEEAEPEEFVVEKVLDR	GlyGly (K)	2258.143	0.14304201	1222	sp|Q13185|CBX3_HUMAN	yes	yes	0	0	1	0	2	1	1		1	1					40.5	40.5	3	2.0206E-25	10415	20190821_JH_EV_Ubi	175.19	103.88	9770800	3484300	2612200	0	1708700	1965700	0	0	0	0			2807	1222	2472	8049;8050;8051;8052	8460;8461;8462;8463;8464	8460		1286		5
KVENEDMNKDQILLEK	Oxidation (M);2 GlyGly (K)	2189.0634	0.063411478	1316	sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN	yes	no	0	0	2	1	2								1	1	25.008	25.008	3	0.0034876	6698	20190902_JH_WT_Ubi_2	84.859	41.302	4981100	0	0	0	0	0	0	0	3117900	1863200			2808	1316	2473	8053;8054	8465;8466	8465		1374;1375	821	2
KVEPWKEQFFESYYGQSSGLSLEDSK	GlyGly (K)	3181.488	0.48802471	1516	sp|Q76L83-2|ASXL2_HUMAN;sp|Q76L83|ASXL2_HUMAN	yes	no	0	0	1	0	2		1	1			1	1	1		41.497	41.497	3;4	1.2568E-06	12429	20190902_JH_WT_Ubi_2	87.802	66.746	49642000	0	8796000	23370000	0	0	1064800	3782900	12628000	0			2809	1516	2474	8055;8056;8057;8058;8059	8467;8468;8469;8470;8471;8472	8472		1513		6
KVESLQEEIAFLK	Unmodified	1532.845	0.84500949	474	sp|P08670|VIME_HUMAN	yes	yes	0	0	0	0	1	1	1								39.602	39.602	2;3	0.00053526	10008	20190821_JH_EV_Ubi	116.9	64.081	1532600	762040	770610	0	0	0	0	0	0	0			2810	474	2475	8060;8061	8473;8474	8473				1
KVFANPEDCVAFGKGENAK	2 GlyGly (K)	2308.0906	0.090629281	512	sp|P10620|MGST1_HUMAN;sp|P10620-2|MGST1_HUMAN	yes	no	0	0	2	0	2			1							28.716	28.716	3	1.5464E-14	5904	20190821_JH_WT_Ubi	147.1	97.677	2945700	0	0	2945700	0	0	0	0	0	0			2811	512	2476	8062	8475	8475		502;503;504		1
KVGISQENKK	GlyGly (K);2 Deamidation (NQ)	1245.6565	0.65648044	1919	sp|Q9GZU8|F192A_HUMAN	yes	yes	0	2	1	0	2								1	1	30.064	30.064	3	0.0081369	8426	20190902_JH_WT_Ubi_2	101.46	10.195	44186000	0	0	0	0	0	0	0	28181000	16005000			2812	1919	2477	8063;8064	8476;8477	8476	615;1238	1855		2
KVLDANSCQSELHEK	GlyGly (K)	1870.8843	0.8843249	1519	sp|Q7KZI7-10|MARK2_HUMAN;sp|Q7KZI7-13|MARK2_HUMAN;sp|Q7KZI7-7|MARK2_HUMAN;sp|Q7KZI7-2|MARK2_HUMAN;sp|Q7KZI7-15|MARK2_HUMAN;sp|Q7KZI7-5|MARK2_HUMAN;sp|Q7KZI7-16|MARK2_HUMAN;sp|Q7KZI7-4|MARK2_HUMAN;sp|Q7KZI7-9|MARK2_HUMAN;sp|Q7KZI7-12|MARK2_HUMAN;sp|Q7KZI7-14|MARK2_HUMAN;sp|Q7KZI7-3|MARK2_HUMAN;sp|Q7KZI7-6|MARK2_HUMAN;sp|Q7KZI7-11|MARK2_HUMAN;sp|Q7KZI7-8|MARK2_HUMAN;sp|Q7KZI7|MARK2_HUMAN	yes	no	0	0	1	0	1	1		1	1	1				1	20.97	20.97	3	2.5665E-06	3892	20190821_JH_WT_Ubi	133.66	87.25	22914000	3413100	0	7177800	2835800	2413000	0	0	0	7073800			2813	1519	2478	8065;8066;8067;8068;8069	8478;8479;8480;8481;8482	8481		1516		5
KVLGSSTSATNSTSVSSR	GlyGly (K)	1881.9392	0.93919724	1314	sp|Q15004-2|PAF15_HUMAN;sp|Q15004|PAF15_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	20.512	20.512	3	2.183E-15	3551	20190821_JH_EV_Ubi	157.83	118.33	54251000	10040000	7259300	761620	3483900	7163100	9479000	7408200	4551600	4103600			2814	1314	2479	8070;8071;8072;8073;8074;8075;8076;8077;8078	8483;8484;8485;8486;8487;8488;8489;8490;8491	8483		1373		9
KVLGSSTSATNSTSVSSR	GlyGly (K);Deamidation (NQ)	1882.9232	0.92321283	1314	sp|Q15004-2|PAF15_HUMAN;sp|Q15004|PAF15_HUMAN	yes	no	0	1	1	0	1		1				1				21.919	21.919	3	0.010246	3446	20190821_JH_MUT_Ubi	51.684	25.739	4767000	0	1517800	0	0	0	3249100	0	0	0			2815	1314	2479	8079;8080	8492;8493	8492	421	1373		1
KVLVTAAAGGTGQFAMQLSK	Oxidation (M);GlyGly (K)	2107.1096	0.10957381	1617	sp|Q8N4Q0|PTGR3_HUMAN;sp|Q8N4Q0-2|PTGR3_HUMAN	yes	no	0	0	1	1	1					1					43.095	43.095	3	0.0268	10921	20190902_JH_EV_Ubi_3	45.221	7.0016	15934000	0	0	0	0	15934000	0	0	0	0			2816	1617	2480	8081	8494	8494		1620	944	1
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	5;4	CON__P02769;sp|P02768-2|ALBU_HUMAN;sp|P02768-3|ALBU_HUMAN;sp|P02768|ALBU_HUMAN;CON__P02768-1	no	no	0	0	0	0	1			1	1						32.811	32.811	3	8.0412E-06	7292	20190821_JH_WT_Ubi	130.95	89.862	6884700	0	0	6232300	652370	0	0	0	0	0		+	2817	5;4	2481	8082;8083	8495;8496	8496				2
KVQVPNCDEIFYAGTGNLLLR	GlyGly (K)	2520.2795	0.27949268	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	1	0	1							1			44.32	44.32	3	0.0026511	11768	20190902_JH_MUT_Ubi_3	69.024	29.5	1387300	0	0	0	0	0	0	1387300	0	0			2818	950	2482	8084	8497	8497		909		1
KVTHAVVTVPAYFNDAQR	Unmodified	2015.0589	0.058858868	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	1		1		1	1	1	1			30.852	30.852	4	0.00022045	7224	20190902_JH_EV_Ubi_2	92.8	53.796	11505000	0	1709400	0	1857800	2614500	3265800	2057900	0	0			2819	517	2483	8085;8086;8087;8088;8089	8498;8499;8500;8501;8502	8498				5
KWTTTALGLLTIPIIIHPIDR	Unmodified	2371.3991	0.39913754	2112	sp|Q9UDX5|MTFP1_HUMAN	yes	yes	0	0	0	0	1			1							52.078	52.078	4	0.0084119	14701	20190821_JH_WT_Ubi	53.909	29.881	2785500	0	0	2785500	0	0	0	0	0	0			2820	2112	2484	8090	8503	8503				1
KYDFYINVCGPVSVSPCQPDSGACQVAK	Unmodified	3145.4307	0.43072631	528	sp|P11717|MPRI_HUMAN	yes	yes	0	0	0	0	1			1							42.047	42.047	3	1.2979E-20	10799	20190821_JH_WT_Ubi	128.55	107.79	2743600	0	0	2743600	0	0	0	0	0	0			2821	528	2485	8091	8504;8505	8504				2
KYEDICPSTHNMDVPNIK	Unmodified	2159.998	0.99797445	1084	sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN;sp|P63241-2|IF5A1_HUMAN;sp|Q9GZV4|IF5A2_HUMAN	yes	no	0	0	0	0	1								1		30.853	30.853	3	0.00041545	8670	20190902_JH_WT_Ubi_2	94.569	63.055	3052900	0	0	0	0	0	0	0	3052900	0			2822	1084	2486	8092	8506	8506				1
KYEDICPSTHNMDVPNIK	Oxidation (M)	2175.9929	0.99288907	1084	sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN;sp|P63241-2|IF5A1_HUMAN;sp|Q9GZV4|IF5A2_HUMAN	yes	no	0	0	0	1	1									1	27.398	27.398	3	0.00016225	7179	20190902_JH_WT_Ubi_3	104.78	75.682	4478300	0	0	0	0	0	0	0	0	4478300			2823	1084	2486	8093	8507	8507			669	1
KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTK	GlyGly (K)	3168.5728	0.5727574	1152	sp|Q04323|UBXN1_HUMAN;sp|Q04323-2|UBXN1_HUMAN	yes	no	0	0	1	0	1	1	1		1		1	1			32.249	32.249	3	1.3373E-07	8058	20190902_JH_MUT_Ubi_2	94.019	53.877	4494000	524790	1018100	0	617500	0	1293100	1040500	0	0			2824	1152	2487	8094;8095;8096;8097;8098	8508;8509;8510;8511;8512;8513	8511		1154;1155		6
KYILSNANSFCYENEVALTSK	GlyGly (K)	2564.2217	0.22170303	1086	sp|P63252|KCNJ2_HUMAN	yes	yes	0	0	1	0	1	1									38.29	38.29	3	0.017182	9486	20190821_JH_EV_Ubi	64.723	32.827	1028900	1028900	0	0	0	0	0	0	0	0			2825	1086	2488	8099	8514	8514		1080		0
KYPNKYESIIATLCENLDSLDEPDAR	2 GlyGly (K);Deamidation (NQ)	3282.5351	0.53505126	1076	sp|P63010-2|AP2B1_HUMAN;sp|P63010|AP2B1_HUMAN;sp|P63010-3|AP2B1_HUMAN	yes	no	0	1	2	0	2								1	1	38.429	38.429	3	0.017075	10790	20190902_JH_WT_Ubi_3	53.355	16.728	10707000	0	0	0	0	0	0	0	1426600	9280100			2826	1076	2489	8100;8101	8515;8516	8516	349	1062;1063		2
KYQEQELPPSPPSAPR	GlyGly (K)	1936.9643	0.96428978	506	sp|P10301|RRAS_HUMAN	yes	yes	0	0	1	0	1	1				1	1		1		27.76	27.76	3	0.009742	5539	20190821_JH_EV_Ubi	69.729	32.959	7527500	1840700	0	0	0	1455700	1624900	0	2606200	0			2827	506	2490	8102;8103;8104;8105	8517;8518;8519;8520;8521	8517		497		5
KYTEQITNEK	GlyGly (K);Deamidation (NQ)	1367.6569	0.65687437	1384	sp|Q16718|NDUA5_HUMAN;sp|Q16718-2|NDUA5_HUMAN	yes	no	0	1	1	0	1									1	39.696	39.696	2	0.029394	11451	20190902_JH_WT_Ubi_3	62.546	10.064	10633000	0	0	0	0	0	0	0	0	10633000			2828	1384	2491	8106	8522	8522	1056	1421		0
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	Unmodified	3722.1951	0.19506631	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	0	0			1	1	1			1		36.228	36.228	3	4.6965E-27	8417	20190821_JH_WT_Ubi	143.21	141.77	7509000	0	0	3455500	0	1163500	0	0	2890000	0			2829	438	2492	8107;8108;8109;8110	8523;8524;8525;8526;8527	8526				5
LADDVDLEQVANETHGHVGADLAALCSEAALQAIR	Unmodified	3671.785	0.78495179	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	0	1		1							48.178	48.178	4	0.0158	13269	20190821_JH_WT_Ubi	33.044	10.805	7079300	790610	0	6288700	0	0	0	0	0	0			2830	974	2493	8111;8112	8528;8529	8529				2
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	Oxidation (M)	3405.6122	0.61219615	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	1	0			1					1		53.517	53.517	3	3.5651E-22	15187	20190821_JH_WT_Ubi	130.7	110.21	31335000	0	0	14813000	0	0	0	0	16522000	0			2831	1097;1515;1858	2494	8113;8114	8530;8531	8530			684	2
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	Deamidation (NQ)	3390.6013	0.60129711	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	1	0	0	0			1							53.964	53.964	3	0.0057763	15424	20190821_JH_WT_Ubi	63.033	42.381	0	0	0	0	0	0	0	0	0	0			2832	1097;1515;1858	2494	8115	8532	8532	974			1
LAELEEFINGPNNAHIQQVGDR	Deamidation (NQ)	2464.1983	0.19826548	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	1	0	0	0			1							40.973	40.973	3	0.021477	10343	20190821_JH_WT_Ubi	58.564	28.136	5884600	0	0	5884600	0	0	0	0	0	0			2833	1123	2495	8116	8533	8533	982;983			0
LAENINKFLTSDNNIAQVPK	GlyGly (K);3 Deamidation (NQ)	2345.1751	0.17507042	1285	sp|Q14207|NPAT_HUMAN	yes	yes	0	3	1	0	1							1			40.867	40.867	3	0.033593	10640	20190902_JH_MUT_Ubi_3	40.968	10.816	901850	0	0	0	0	0	0	901850	0	0			2834	1285	2496	8117	8534	8534	413;414;1031			0
LAEPSQMLKHAVVNLINYQDDAELATR	Oxidation (M);GlyGly (K)	3168.5874	0.5873616	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	1	1	1		1								44.236	44.236	4	0.012954	11184	20190821_JH_MUT_Ubi	42.791	13.298	802880	0	802880	0	0	0	0	0	0	0			2835	770	2497	8118	8535	8535		755	484	1
LAEQFVLLNLVYETTDK	Unmodified	1995.0565	0.056458831	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	0	0	0		1					1			55.096	55.096	3	1.0851E-10	14725	20190821_JH_MUT_Ubi	144.25	100	10077000	0	8088900	0	0	0	0	1987800	0	0			2836	367	2498	8119;8120	8536;8537	8536				2
LAEQFVLLNLVYETTDKHLSPDGQYVPR	GlyGly (K)	3358.7198	0.71975598	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	1	0	1		1								51.464	51.464	4	0.0013601	13627	20190821_JH_MUT_Ubi	56.588	36.168	2313400	0	2313400	0	0	0	0	0	0	0			2837	367	2499	8121	8538	8538		329		1
LAGDGVGAVNISVMNSTGGSSSGGGIGLTLGGTMGSNALSFSSSAGPGLLK	2 Oxidation (M)	4599.2432	0.2432497	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	2	0		2								52.377	52.377	3;4	1.1644E-11	13856	20190821_JH_MUT_Ubi	66.014	52.961	7127100	0	7127100	0	0	0	0	0	0	0		+	2838	8;19	2500	8122;8123	8539;8540	8539			15;16	2
LAGDGVGAVNISVMNSTGGSSSGGGIGLTLGGTMGSNALSFSSSAGPGLLK	Oxidation (M)	4583.2483	0.24833507	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	1	0		1								53.474	53.474	3	3.0162E-06	14236	20190821_JH_MUT_Ubi	47.834	35.092	3011600	0	3011600	0	0	0	0	0	0	0		+	2839	8;19	2500	8124	8541	8541			15;16	1
LAGGNDVGIFVAGVLEDSPAAK	Unmodified	2099.0899	0.089884225	1174	sp|Q07157-2|ZO1_HUMAN;sp|Q07157|ZO1_HUMAN	yes	no	0	0	0	0	0			1							52.207	52.207	2	0.011595	14740	20190821_JH_WT_Ubi	63.31	20.885	996000	0	0	996000	0	0	0	0	0	0			2840	1174	2501	8125	8542	8542				0
LAKAAFDDAIAELDTLSEESYK	GlyGly (K)	2513.2173	0.21732916	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	1	0	1		1								49.661	49.661	3	0.00024223	13071	20190821_JH_MUT_Ubi	81.017	39.105	2188700	0	2188700	0	0	0	0	0	0	0			2841	1043	2502	8126	8543	8543		1018		1
LALEQQQLICK	GlyGly (K);Deamidation (NQ)	1457.7548	0.75481428	1581	sp|Q8IWX8|CHERP_HUMAN	yes	yes	0	1	1	0	0				1						20.818	20.818	3	0.03352	4353	20190902_JH_EV_Ubi_2	54.608	11.865	0	0	0	0	0	0	0	0	0	0			2842	1581	2503	8127	8544	8544	1125;1126			1
LALLLSTANSPPGPLLTPALLPHR	Unmodified	2461.4421	0.44206498	1982	sp|Q9HBM0-2|VEZA_HUMAN;sp|Q9HBM0|VEZA_HUMAN	yes	no	0	0	0	0	0	1	1								52.124	52.124	3	1.4206E-08	14053	20190821_JH_EV_Ubi	109.37	97.313	2418600	1724800	693850	0	0	0	0	0	0	0			2843	1982	2504	8128;8129	8545;8546	8545				2
LALVTGGEIASTFDHPELVK	Unmodified	2096.1154	0.11537069	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	0	0		1	1				1			44.046	44.046	3	0.0098252	11682	20190821_JH_WT_Ubi	54.764	35.375	10535000	0	1371500	6792400	0	0	0	2371300	0	0			2844	1105	2505	8130;8131;8132	8547;8548;8549	8549				3
LANTCFNEIEKQAQAADK	2 GlyGly (K);3 Deamidation (NQ)	2281.0169	0.016855216	1999	sp|Q9NP61-2|ARFG3_HUMAN;sp|Q9NP61|ARFG3_HUMAN	yes	no	0	3	2	0	1					1					49.428	49.428	3	0.030396	12168	20190902_JH_EV_Ubi_3	48.899	20.733	0	0	0	0	0	0	0	0	0	0			2845	1999	2506	8133	8550	8550	643;1267;1268			1
LANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAK	Unmodified	4077.8989	0.89893569	1100	sp|P68402|PA1B2_HUMAN	yes	yes	0	0	0	0	0			1							50.176	50.176	5	0.015768	14072	20190821_JH_WT_Ubi	32.233	12.909	3949600	0	0	3949600	0	0	0	0	0	0			2846	1100	2507	8134	8551	8551				1
LAPITSDPTEATAVGAVEASFK	Unmodified	2174.1107	0.11067925	556	sp|P14618|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	0	1		1	1				1	1	47.182	47.182	3	6.0724E-22	12853	20190821_JH_EV_Ubi	147.49	104.46	154170000	15691000	0	73225000	6170200	0	0	0	31193000	27892000			2847	556	2508	8135;8136;8137;8138;8139	8552;8553;8554;8555;8556	8552				5
LAPPLVTLLSAEPELQYVALR	Unmodified	2292.3093	0.30931947	1192	sp|Q10567-3|AP1B1_HUMAN;sp|Q10567-2|AP1B1_HUMAN;sp|Q10567|AP1B1_HUMAN;sp|Q10567-4|AP1B1_HUMAN	yes	no	0	0	0	0	0			1							56.257	56.257	3	0.025936	16107	20190821_JH_WT_Ubi	42.309	18.98	683090	0	0	683090	0	0	0	0	0	0			2848	1192	2509	8140	8557	8557				1
LAQAKEENVGLHQTLDQTLNELNCI	GlyGly (K)	2964.4611	0.46109846	1092;1093	sp|P67936|TPM4_HUMAN;sp|P67936-2|TPM4_HUMAN	no	no	0	0	1	0	1			1							44.79	44.79	3	0.00047613	11947	20190821_JH_WT_Ubi	72.864	50.747	3946900	0	0	3946900	0	0	0	0	0	0			2849	1092;1093	2510	8141	8558	8558		1089		1
LAQQQAAAAAAAAAAASQQGSAK	Unmodified	2054.0505	0.050479026	1911	sp|Q9BZK7|TBL1R_HUMAN	yes	yes	0	0	0	0	0				1	1					34.04	34.04	3	0.00090774	8284	20190902_JH_EV_Ubi_3	70.072	44.905	1108400	0	0	0	0	1108400	0	0	0	0			2850	1911	2511	8142;8143	8559;8560	8560				2
LAQQYYLVYQEPIPTAQLVQR	Unmodified	2520.3377	0.33765949	682	sp|P25787|PSA2_HUMAN	yes	yes	0	0	0	0	0			1					1		47.807	47.807	3	3.4378E-07	13132	20190821_JH_WT_Ubi	108.14	59.665	6603100	0	0	5148200	0	0	0	0	1455000	0			2851	682	2512	8144;8145	8561;8562	8561				2
LASALESGTVWINCYNALYAQAPFGGFK	Unmodified	3047.4851	0.48512836	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0								1		54.743	54.743	3	6.5774E-11	16287	20190902_JH_WT_Ubi_2	105.71	81.966	2617500	0	0	0	0	0	0	0	2617500	0			2852	865	2513	8146	8563	8563				1
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	2 Oxidation (M)	4235.0335	0.033531693	841	sp|P43243|MATR3_HUMAN	yes	yes	0	0	0	2	0			1							42.671	42.671	4	0.0024586	11026	20190821_JH_WT_Ubi	41.826	23.804	11936000	0	0	11936000	0	0	0	0	0	0			2853	841	2514	8147	8564	8564			534;535	1
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	Unmodified	4203.0437	0.043702449	841	sp|P43243|MATR3_HUMAN	yes	yes	0	0	0	0	0			1							46.557	46.557	4	0.0073438	12649	20190821_JH_WT_Ubi	32.963	16.3	7645800	0	0	7645800	0	0	0	0	0	0			2854	841	2514	8148	8565	8565				1
LASTLVHLGEYQAAVDGAR	Unmodified	1970.0221	0.022139011	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	37.462	37.462	3	3.5071E-05	10586	20190902_JH_WT_Ubi_3	104.78	69.743	17597000	0	0	7524600	0	0	2441700	0	4241700	3389200			2855	1123	2515	8149;8150;8151;8152;8153	8566;8567;8568;8569;8570	8570				5
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	Unmodified	2773.4246	0.4246366	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	36.759	36.759	3	4.5306E-47	9219	20190902_JH_MUT_Ubi_3	163.16	119.96	357090000	36462000	13983000	74578000	27462000	19722000	14727000	13703000	74283000	82173000			2856	427	2516	8154;8155;8156;8157;8158;8159;8160;8161;8162	8571;8572;8573;8574;8575;8576;8577;8578;8579;8580	8576				10
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKK	GlyGly (K)	3015.5625	0.56252706	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1	1		33.305	33.305	3	4.2951E-09	7252	20190821_JH_MUT_Ubi	92.07	67.175	20164000	3172200	4169600	0	0	0	4730100	3936800	4155100	0			2857	427	2517	8163;8164;8165;8166;8167	8581;8582;8583;8584;8585	8582		405;406		5
LATPTYGDLNHLVSATMSGVTTSLR	Oxidation (M)	2620.3167	0.31666605	1248	sp|Q13509-2|TBB3_HUMAN;sp|Q13509|TBB3_HUMAN	yes	no	0	0	0	1	0			1			2	1			44.519	44.519	3	0.00013986	11896	20190821_JH_WT_Ubi	78.236	48.76	8755500	0	0	4473200	0	0	2817400	1464900	0	0			2858	1248	2518	8168;8169;8170;8171	8586;8587;8588;8589	8589			778	4
LATTACTLGDGEAVGADSGTSSAVSLKNR	GlyGly (K)	2922.3989	0.39889213	320	sp|O94901-3|SUN1_HUMAN;sp|O94901-9|SUN1_HUMAN;sp|O94901-4|SUN1_HUMAN;sp|O94901-2|SUN1_HUMAN;sp|O94901-7|SUN1_HUMAN;sp|O94901-6|SUN1_HUMAN;sp|O94901-5|SUN1_HUMAN;sp|O94901-8|SUN1_HUMAN;sp|O94901|SUN1_HUMAN	yes	no	0	0	1	0	1							1	1		33.018	33.018	3	0.00012251	9573	20190902_JH_WT_Ubi_2	72.946	49.437	1772400	0	0	0	0	0	0	517870	1254600	0			2859	320	2519	8172;8173	8590;8591	8591		298		2
LAVDEEENADNNTKANVTK	GlyGly (K)	2188.0244	0.024383435	393	sp|P02786|TFR1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	24.456	24.456	3	9.5471E-20	5208	20190902_JH_EV_Ubi_3	158.98	125.21	111650000	9474200	5947300	15690000	11195000	5774100	11671000	7580800	22655000	21664000			2860	393	2520	8174;8175;8176;8177;8178;8179;8180;8181;8182	8592;8593;8594;8595;8596;8597;8598;8599;8600	8594		362;363		9
LAVDEEENADNNTKANVTK	GlyGly (K);Deamidation (NQ)	2189.0084	0.0083990195	393	sp|P02786|TFR1_HUMAN	yes	yes	0	1	1	0	1								1		25.354	25.354	3	0.013958	6756	20190902_JH_WT_Ubi_2	83.964	51.414	2110900	0	0	0	0	0	0	0	2110900	0			2861	393	2520	8183	8601	8601	127;128;129;130	362;363		1
LAYVAAGDLAPINAFIGGLAAQEVMK	Oxidation (M)	2618.3778	0.37780975	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	1	0			1				1			55.311	55.311	3	1.9608E-15	13954	20190902_JH_MUT_Ubi_3	124.21	101.97	4676800	0	0	3113000	0	0	0	1563900	0	0			2862	651	2521	8184;8185	8602;8603	8602			402	2
LCGDDHFCNFDVAATGSLSTGTATR	Unmodified	2672.1595	0.15951348	2118	sp|Q9UGT4|SUSD2_HUMAN	yes	yes	0	0	0	0	0	1			1						38.995	38.995	3	2.2847E-12	9816	20190821_JH_EV_Ubi	116.45	88.836	3651700	2935800	0	0	715940	0	0	0	0	0			2863	2118	2522	8186;8187	8604;8605;8606	8604				3
LCPGGQLPFLLYGTEVHTDTNK	Unmodified	2459.2155	0.21549544	121	sp|O00299|CLIC1_HUMAN	yes	yes	0	0	0	0	0			1					1		45.642	45.642	3	0.0059141	13768	20190902_JH_WT_Ubi_2	57.009	24.444	45583000	0	0	29003000	0	0	0	0	16580000	0			2864	121	2523	8188;8189	8607;8608	8608				2
LCYVALDFEQEMATAASSSSLEK	Oxidation (M)	2565.1615	0.16147054	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	0	0	1	0	2	2	2	1	1	1	1	1	1	46.537	46.537	3	6.4808E-30	12913	20190902_JH_MUT_Ubi_2	167.61	133.14	407800000	30493000	21266000	121700000	16397000	10515000	20418000	20396000	73596000	93019000			2865	1000;1087;1490	2524	8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201	8609;8610;8611;8612;8613;8614;8615;8616;8617;8618;8619;8620;8621;8622	8617			618	14
LCYVALDFEQEMATAASSSSLEK	Unmodified	2549.1666	0.16655592	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	0	0	0	0	1	1	2		1	1	1	1	1	51.716	51.716	3	8.4786E-23	14530	20190821_JH_WT_Ubi	156.08	127.27	189580000	12492000	17063000	85113000	0	1352000	7533700	7093400	23090000	35838000			2866	1000;1087;1490	2524	8202;8203;8204;8205;8206;8207;8208;8209;8210	8623;8624;8625;8626;8627;8628;8629;8630;8631;8632	8628				10
LCYVALDFEQEMATAASSSSLEK	Oxidation (M);Deamidation (NQ)	2566.1455	0.14548613	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	1	0	1	0									1	45.639	45.639	3	0.029636	13306	20190902_JH_WT_Ubi_3	47.603	17.314	7760000	0	0	0	0	0	0	0	0	7760000			2867	1000;1087;1490	2524	8211	8633	8633	958		618	1
LCYVALDFEQEMATAASSSSLEK	Deamidation (NQ)	2550.1506	0.15057151	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN	no	no	0	1	0	0	0									1	52.484	52.484	3	1.1213E-06	15236	20190902_JH_WT_Ubi_3	108.28	69.499	1072900	0	0	0	0	0	0	0	0	1072900			2868	1000;1087;1490	2524	8212	8634	8634	958			1
LDADMPEVAVEGPNGKWK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2085.9677	0.96772018	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	1	1	1	1							1			33.823	33.823	3	0.024874	8334	20190902_JH_MUT_Ubi_3	53.861	26.636	517010	0	0	0	0	0	0	517010	0	0			2869	1190	2525	8213	8635	8635	391	1216;1217	750	0
LDDTVHVVIATPGR	Unmodified	1491.8045	0.80454166	687	sp|P26196|DDX6_HUMAN	yes	yes	0	0	0	0	0	1	1								34.309	34.309	3	0.0020455	7499	20190821_JH_MUT_Ubi	87.719	53.334	2250700	1244000	1006700	0	0	0	0	0	0	0			2870	687	2526	8214;8215	8636;8637	8637				2
LDEIYVAGLVAHSDLDER	Unmodified	2014.0007	0.0007348666	252	sp|O60506-4|HNRPQ_HUMAN;sp|O60506-3|HNRPQ_HUMAN;sp|O60506-2|HNRPQ_HUMAN;sp|O60506|HNRPQ_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	44.087	44.087	3	7.2098E-05	11654	20190821_JH_WT_Ubi	103.6	25.971	23070000	0	0	9228700	0	0	1853700	0	4807700	7179900			2871	252	2527	8216;8217;8218;8219	8638;8639;8640;8641	8639				4
LDFEGPDAKLSGPSLK	GlyGly (K)	1786.9101	0.91012895	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1								36.675	36.675	3	0.0033211	8385	20190821_JH_MUT_Ubi	78.326	37.574	5921200	2926300	2994900	0	0	0	0	0	0	0			2872	1190	2528	8220;8221	8642;8643	8643		1218		2
LDGHCHSELAIDIIQITSQAQAK	Unmodified	2547.2751	0.27513559	1149	sp|Q03169|TNAP2_HUMAN	yes	yes	0	0	0	0	0		1								42.492	42.492	4	0.014725	10508	20190821_JH_MUT_Ubi	44.729	12.363	1342900	0	1342900	0	0	0	0	0	0	0			2873	1149	2529	8222	8644	8644				1
LDGNELDLSLSDLNEVPVK	Unmodified	2069.0528	0.052830017	1755	sp|Q96AG4|LRC59_HUMAN	yes	yes	0	0	0	0	0			1							50.125	50.125	2	0.00060938	14020	20190821_JH_WT_Ubi	93.716	49.153	4562800	0	0	4562800	0	0	0	0	0	0			2874	1755	2530	8223	8645	8645				0
LDHECAEGGENLSVGQR	Unmodified	1869.8275	0.8275383	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN	yes	no	0	0	0	0	0								1		25.124	25.124	3	0.033798	6700	20190902_JH_WT_Ubi_2	41.359	10.317	1530800	0	0	0	0	0	0	0	1530800	0			2875	760	2531	8224	8646	8646				1
LDINLLDNVVNCLYHGEGAQQR	Unmodified	2540.2442	0.24416981	166	sp|O14980|XPO1_HUMAN	yes	yes	0	0	0	0	0	1									52.856	52.856	3	2.833E-22	14202	20190821_JH_EV_Ubi	153.68	117.04	1570600	1570600	0	0	0	0	0	0	0	0			2876	166	2532	8225	8647	8647				1
LDNVPHTPSSYIETLPK	Unmodified	1909.9785	0.97854286	1845	sp|Q99733|NP1L4_HUMAN;sp|Q99733-2|NP1L4_HUMAN	yes	no	0	0	0	0	0									1	36.131	36.131	3	0.027433	10200	20190902_JH_WT_Ubi_3	45.384	17.065	2472000	0	0	0	0	0	0	0	0	2472000			2877	1845	2533	8226	8648	8648				1
LDQLIYIPLPDEKSR	GlyGly (K)	1913.0258	0.025827405	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	43.594	43.594	3	6.2706E-21	11094	20190821_JH_MUT_Ubi	176.4	116.03	50329000	4075300	4844400	13019000	2595900	2254500	5180200	5182100	5928200	7249500			2878	974	2534	8227;8228;8229;8230;8231;8232;8233;8234;8235	8649;8650;8651;8652;8653;8654;8655;8656;8657	8652		960		9
LDQNVNEAMPSLKITNDYIF	Oxidation (M);GlyGly (K)	2454.1737	0.17369021	1638	sp|Q8NC54|KCT2_HUMAN	yes	yes	0	0	1	1	1		1				1				47.526	47.526	3	0.010734	13713	20190902_JH_MUT_Ubi_2	59.733	34.512	1940000	0	955090	0	0	0	984900	0	0	0			2879	1638	2535	8236;8237	8658;8659	8659		1639	951	2
LDSGKELHINLIPNK	GlyGly (K)	1803.9843	0.98429694	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	yes	no	0	0	1	0	1		1				1				33.139	33.139	4	0.011764	8364	20190902_JH_MUT_Ubi_2	64.313	35.68	16982000	0	7104700	0	0	0	9877700	0	0	0			2880	455	2536	8238;8239	8660;8661	8661		458		2
LDSPDPFKLNDPFQPFPGNDSPK	GlyGly (K)	2685.2711	0.27109607	831	sp|P42566-2|EPS15_HUMAN;sp|P42566|EPS15_HUMAN	yes	no	0	0	1	0	1				1	1	1	1			46.594	46.594	3	1.7759E-11	13547	20190902_JH_MUT_Ubi_2	124.2	71.884	5885200	0	0	0	576170	724040	2764600	1820400	0	0			2881	831	2537	8240;8241;8242;8243	8662;8663;8664;8665;8666;8667	8666		799;800		6
LDSPDPFKLNDPFQPFPGNDSPK	GlyGly (K);Deamidation (NQ)	2686.2551	0.25511165	831	sp|P42566-2|EPS15_HUMAN;sp|P42566|EPS15_HUMAN	yes	no	0	1	1	0	1		1								47.178	47.178	3	1.7908E-06	12272	20190821_JH_MUT_Ubi	118.54	36.508	0	0	0	0	0	0	0	0	0	0			2882	831	2537	8244	8668	8668	291	799;800		1
LDSQNAQGYEWIFIAWSPDHSHVR	Unmodified	2855.3416	0.34157567	1195	sp|Q12792-3|TWF1_HUMAN;sp|Q12792|TWF1_HUMAN	yes	no	0	0	0	0	0		1	1					1		48.193	48.193	4	9.644E-10	13221	20190821_JH_WT_Ubi	114.53	73.747	14034000	0	1820500	7995700	0	0	0	0	4218000	0			2883	1195	2538	8245;8246;8247	8669;8670;8671	8670				3
LDTNSDGQLDFSEFLNLIGGLAMACHDSFLK	Oxidation (M)	3443.6014	0.60135669	751	sp|P31949|S10AB_HUMAN	yes	yes	0	0	0	1	0								1		58.474	58.474	3	5.4406E-06	16894	20190902_JH_WT_Ubi_2	84.03	62.331	1256300	0	0	0	0	0	0	0	1256300	0			2884	751	2539	8248	8672	8672			471	1
LDVGNAEVKLEEENR	GlyGly (K)	1827.8963	0.8962698	920	sp|P51572|BAP31_HUMAN;sp|P51572-2|BAP31_HUMAN	yes	no	0	0	1	0	1	1		1	1	1					32.455	32.455	3	0.0021577	7461	20190821_JH_EV_Ubi	87.447	57.759	13742000	3353900	0	5334000	2665600	2388900	0	0	0	0			2885	920	2540	8249;8250;8251;8252	8673;8674;8675;8676	8673		886		4
LDYFLLSHSLLPALCDSK	Unmodified	2091.0711	0.071063038	700	sp|P27695|APEX1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	51.608	51.608	3	0.0001535	14568	20190821_JH_WT_Ubi	97.073	6.3663	24922000	0	3255400	9238600	0	0	1722200	1908200	2977800	5819500			2886	700	2541	8253;8254;8255;8256;8257;8258	8677;8678;8679;8680;8681;8682	8680				6
LDYLDLYLIHWPTGFK	Unmodified	1993.0349	0.034935528	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	0								1		54.299	54.299	3	0.0044907	16165	20190902_JH_WT_Ubi_2	71.98	17.382	8407700	0	0	0	0	0	0	0	8407700	0			2887	563	2542	8259	8683	8683				1
LDYLDLYLIHWPTGFKPGK	Unmodified	2275.2041	0.20412612	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	1			1					1	1	50.303	50.303	4	0.016758	15099	20190902_JH_WT_Ubi_2	54.073	33.028	120430000	0	0	37050000	0	0	0	0	78160000	5218700			2888	563	2543	8260;8261;8262	8684;8685;8686	8685				3
LDYNNIPTVVFSHPPIGTVGLTEDEAIHK	Unmodified	3175.619	0.61897931	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	0	0			1						1	46.604	46.604	4	0.025965	13620	20190902_JH_WT_Ubi_3	31.37	14.432	12029000	0	0	8309600	0	0	0	0	0	3719800			2889	376	2544	8263;8264	8687;8688	8688				2
LEAIEDDSVKETDSSSASAATPSK	GlyGly (K)	2551.1773	0.17731484	960	sp|P54578-2|UBP14_HUMAN;sp|P54578-3|UBP14_HUMAN;sp|P54578|UBP14_HUMAN	yes	no	0	0	1	0	1		1								28.5	28.5	3	1.0162E-06	5288	20190821_JH_MUT_Ubi	96.128	72.956	819510	0	819510	0	0	0	0	0	0	0			2890	960	2545	8265	8689	8689		925		1
LEAQHQALVTLWHQLHVDMK	Oxidation (M)	2412.2372	0.23723394	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	1	0	1	1	1			1		1	1	38.387	38.387	4	4.751E-07	11342	20190902_JH_WT_Ubi_2	119.48	71.722	183230000	11029000	10416000	96191000	0	0	9699000	0	26971000	28920000			2891	1332	2546	8266;8267;8268;8269;8270;8271	8690;8691;8692;8693;8694;8695	8694			831	6
LEAQHQALVTLWHQLHVDMK	Unmodified	2396.2423	0.24231932	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1	1	1			1		1	1	40.967	40.967	4	5.4179E-05	10313	20190821_JH_WT_Ubi	93.812	69.357	114920000	1266700	3246900	100300000	0	0	1365300	0	5276800	3468600			2892	1332	2546	8272;8273;8274;8275;8276;8277	8696;8697;8698;8699;8700;8701	8699				6
LEAQLGQGK	GlyGly (K)	1056.5564	0.55637247	1428	sp|Q5JR59|MTUS2_HUMAN	yes	yes	0	0	1	0	0									1	29.438	29.438	2	0.018713	7872	20190902_JH_WT_Ubi_3	68.787	15.85	22900000	0	0	0	0	0	0	0	0	22900000			2893	1428	2547	8278	8702	8702		1443		1
LEAYQHLFYLLQTNPTYLAK	Unmodified	2425.2682	0.26818294	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	49.993	49.993	3	1.7636E-16	13987	20190821_JH_WT_Ubi	147.1	112.43	50625000	0	0	27099000	0	0	0	0	17269000	6256600			2894	863	2548	8279;8280;8281	8703;8704;8705	8703				3
LECGGSAMEDKGLFIK	Oxidation (M);GlyGly (K)	1883.8757	0.87573405	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	1	1		1						1	1	30.802	30.802	3	0.003571	8676	20190902_JH_WT_Ubi_2	80.507	35.392	19111000	0	1766600	0	0	0	0	0	9102600	8241700			2895	865	2549	8282;8283;8284	8706;8707;8708	8707		839	546	3
LEDASNELNSMNDVKEK	2 Deamidation (NQ)	1936.8572	0.85716668	1491	sp|Q6TFL3-4|CC171_HUMAN	yes	yes	0	2	0	0	1	1									34.461	34.461	2	0.03554	8156	20190821_JH_EV_Ubi	45.879	11.111	0	0	0	0	0	0	0	0	0	0			2896	1491	2550	8285	8709	8709	471;472			1
LEDYYKIDEK	GlyGly (K)	1428.6773	0.67727546	112	sp|O00186|STXB3_HUMAN	yes	yes	0	0	1	0	1		1				1	1			27.537	27.537	3	0.0071022	6430	20190902_JH_MUT_Ubi_2	96.113	34.77	3467400	0	736110	0	0	0	1575600	1155600	0	0			2897	112	2551	8286;8287;8288	8710;8711;8712	8711		96;97		3
LEEDINSSMTNSTAASRPPVTLR	Oxidation (M)	2504.2177	0.21768029	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	0	1	1			1					1	1	31.337	31.337	3	1.7415E-06	8888	20190902_JH_WT_Ubi_2	100.46	59.941	14215000	0	0	3137300	0	0	0	0	6881500	4196400			2898	1341	2552	8289;8290;8291	8713;8714;8715;8716	8714			840	4
LEEDISSSMTNSTAASRPPVTLR	Oxidation (M)	2477.2068	0.20678125	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	0	0	1	1			1		1			1	1	31.626	31.626	3	0.00033615	7415	20190902_JH_EV_Ubi_3	83.666	33.802	18400000	0	0	4901000	0	569640	0	0	6680100	6249700			2899	1342	2553	8292;8293;8294;8295	8717;8718;8719;8720	8717			845	4
LEEDISSSMTNSTAASRPPVTLR	Unmodified	2461.2119	0.21186663	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	0	0	0	1			1							35.519	35.519	3	0.03374	8205	20190821_JH_WT_Ubi	55.536	24.877	2690300	0	0	2690300	0	0	0	0	0	0			2900	1342	2553	8296	8721	8721				1
LEEDISSSMTNSTAASRPPVTLR	Oxidation (M);Deamidation (NQ)	2478.1908	0.19079684	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	1	0	1	1									1	33.181	33.181	3	0.032403	9181	20190902_JH_WT_Ubi_3	42.639	11.956	0	0	0	0	0	0	0	0	0	0			2901	1342	2553	8297	8722	8722	426		845	1
LEEEGEQFVKK	GlyGly (K)	1448.7147	0.7147236	650	sp|P22307-6|NLTP_HUMAN;sp|P22307-2|NLTP_HUMAN;sp|P22307-4|NLTP_HUMAN;sp|P22307-7|NLTP_HUMAN;sp|P22307-8|NLTP_HUMAN;sp|P22307|NLTP_HUMAN	yes	no	0	0	1	0	1				1	1				1	24.347	24.347	3	0.00029433	5207	20190902_JH_EV_Ubi_3	136.52	86.032	6514700	0	0	0	1547700	991460	0	0	0	3975500			2902	650	2554	8298;8299;8300	8723;8724;8725	8724		621		3
LEEKQAACLEQIREMEK	2 Deamidation (NQ)	2105.9973	0.99730575	1126	sp|Q00722-3|PLCB2_HUMAN;sp|Q00722-2|PLCB2_HUMAN;sp|Q00722|PLCB2_HUMAN	yes	no	0	2	0	0	2									1	26.716	26.716	4	0.03293	7015	20190902_JH_WT_Ubi_3	45.614	19.179	3539100	0	0	0	0	0	0	0	0	3539100			2903	1126	2555	8301	8726	8726	985;986			0
LEELTMDGAKAK	Oxidation (M)	1320.6595	0.65951691	133	sp|O00567|NOP56_HUMAN	yes	yes	0	0	0	1	1				1						31.96	31.96	2	0.0072024	7620	20190902_JH_EV_Ubi_2	83.948	14.123	1880600	0	0	0	1880600	0	0	0	0	0			2904	133	2556	8302	8727	8727			60	1
LEENNHKTEA	GlyGly (K)	1297.5899	0.58985744	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	0	1	0	1		1	1	1	1					11.416	11.416	3	0.019302	2406	20190902_JH_EV_Ubi_3	75.387	16.711	63441000	0	8902400	5031800	26224000	23283000	0	0	0	0			2905	1260	2557	8303;8304;8305;8306	8728;8729;8730;8731	8729		1325		4
LEEQDSSPPQSTPGLMKGNK	Oxidation (M);GlyGly (K)	2272.0641	0.064139759	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN	yes	no	0	0	1	1	1	1			1	1	1	1			24.218	24.218	3	1.2387E-23	5102	20190902_JH_EV_Ubi_2	164.01	98.775	34658000	8341100	0	0	12141000	6827000	3854000	3495700	0	0			2906	794	2558	8307;8308;8309;8310;8311	8732;8733;8734;8735;8736	8733		771;772	503	5
LEEQDSSPPQSTPGLMKGNK	GlyGly (K)	2256.0692	0.069225137	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN	yes	no	0	0	1	0	1	1	1								27.131	27.131	3	0.00031722	4804	20190821_JH_MUT_Ubi	84.653	46.884	1933800	1408700	525170	0	0	0	0	0	0	0			2907	794	2558	8312;8313	8737;8738	8738		771;772		1
LEEQDSSPPQSTPGLMKGNK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2273.0482	0.048155344	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN	yes	no	0	1	1	1	1					1					24.778	24.778	3	0.0026528	5356	20190902_JH_EV_Ubi_3	82.877	49.253	910680	0	0	0	0	910680	0	0	0	0			2908	794	2558	8314	8739	8739	910	771;772	503	1
LEEQDSSPPQSTPGLMKGNKR	Oxidation (M);2 GlyGly (K)	2542.2082	0.20817823	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN;sp|P37088-6|SCNNA_HUMAN;sp|P37088-2|SCNNA_HUMAN	yes	no	0	0	2	1	2	1			1						22.086	22.086	3	0.004417	4602	20190902_JH_EV_Ubi_2	67.645	22.298	1191400	442810	0	0	748590	0	0	0	0	0			2909	794	2559	8315;8316	8740;8741	8741		771;772	503	2
LEGALGADTTEDGDEKSLEK	GlyGly (K)	2191.0128	0.012815695	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN;sp|Q9NZM1-3|MYOF_HUMAN;sp|Q9NZM1-5|MYOF_HUMAN	yes	no	0	0	1	0	1	1				1					29.091	29.091	3	0.028523	6569	20190902_JH_EV_Ubi_3	57.745	24.438	3192400	1424900	0	0	0	1767400	0	0	0	0			2910	2073	2560	8317;8318	8742;8743	8743		1956		1
LEGDLTGPSVDVEVPDVELECPDAKLK	GlyGly (K)	3037.4802	0.48016214	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			44.638	44.638	3	0.0035127	11883	20190902_JH_MUT_Ubi_3	53.496	12.014	825670	0	0	0	0	0	0	825670	0	0			2911	1190	2561	8319	8744	8744		1219;1220		1
LEGDLTGPSVGVEVPDVELECPDAK	Unmodified	2624.2527	0.25272839	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	47.488	47.488	3	8.0126E-10	14352	20190902_JH_WT_Ubi_2	99.603	55.135	13384000	0	0	4427300	0	0	619390	0	2758700	5578800			2912	1190	2562	8320;8321;8322;8323	8745;8746;8747;8748	8747				4
LEGDLTGPSVGVEVPDVELECPDAKLK	GlyGly (K)	2979.4747	0.47468284	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1	1	1				1	1	1	1	44.425	44.425	3	3.5021E-28	13401	20190902_JH_WT_Ubi_2	158.91	127.43	13133000	1966900	5043000	0	0	0	2177400	2193900	1169700	582580			2913	1190	2563	8324;8325;8326;8327;8328;8329	8749;8750;8751;8752;8753;8754;8755	8754		1221;1222		7
LEGDSTDLSDQIAELQAQIAELK	Unmodified	2486.2388	0.23879289	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0			1						1	55.502	55.502	3	1.3287E-46	15833	20190902_JH_WT_Ubi_3	193.36	119.04	4677800	0	0	3433400	0	0	0	0	0	1244500			2914	776	2564	8330;8331	8756;8757	8757				2
LEGGEVDLKGPK	GlyGly (K)	1354.7092	0.70924429	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			24.863	24.863	3	0.026048	5455	20190902_JH_MUT_Ubi_3	65.179	34.307	4153300	0	0	0	0	0	0	4153300	0	0			2915	1190	2565	8332	8758	8758		1213		1
LEGNSPQGSNQGVKITPDQQK	GlyGly (K)	2338.1513	0.15131528	1007	sp|P61006|RAB8A_HUMAN	yes	yes	0	0	1	0	1		1								24.58	24.58	3	0.022521	4052	20190821_JH_MUT_Ubi	48.315	20.819	482690	0	482690	0	0	0	0	0	0	0			2916	1007	2566	8333	8759	8759		996		1
LEGPDVSLKGPGVDLPSVNLSMPK	GlyGly (K)	2562.3363	0.33633886	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								45.993	45.993	3	0.0015137	11872	20190821_JH_MUT_Ubi	66.3	33.319	1080900	0	1080900	0	0	0	0	0	0	0			2917	1190	2567	8334	8760	8760		1205		1
LEGVLAEVAQHYQDTLIR	Unmodified	2054.0797	0.07965389	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0	1			1	1					46.55	46.55	3	0.0085971	12720	20190821_JH_EV_Ubi	59.634	22.621	5311700	3213400	0	0	677500	1420800	0	0	0	0			2918	863	2568	8335;8336;8337	8761;8762;8763	8761				3
LEKIFQNAPTDPTQDFSTQVAK	GlyGly (K)	2591.2867	0.28674613	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	38.457	38.457	3	2.9353E-56	10442	20190902_JH_MUT_Ubi_2	201.96	161	826140000	90277000	97669000	125850000	35763000	48851000	130030000	128450000	101350000	67894000			2919	849	2569	8338;8339;8340;8341;8342;8343;8344;8345;8346	8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775	8769		827		12
LEKIFQNAPTDPTQDFSTQVAK	GlyGly (K);Deamidation (NQ)	2592.2708	0.27076172	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	1	1	0	1					1	2	1	1	1	38.978	38.978	3	1.3098E-35	11542	20190902_JH_WT_Ubi_2	171.83	132.94	37924000	0	0	0	0	4415200	12575000	8381400	6426800	6126400			2920	849	2569	8347;8348;8349;8350;8351;8352	8776;8777;8778;8779;8780;8781;8782	8780	300;926;927;928	827		6
LEKQQQMHIVDMLSKEIQELQSK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2929.4525	0.45250761	979	sp|P55196-2|AFAD_HUMAN;sp|P55196-6|AFAD_HUMAN;sp|P55196-3|AFAD_HUMAN;sp|P55196-1|AFAD_HUMAN;sp|P55196|AFAD_HUMAN;sp|P55196-5|AFAD_HUMAN	yes	no	0	1	1	2	2	1									35.492	35.492	3	0.034434	8538	20190821_JH_EV_Ubi	40.689	14.063	0	0	0	0	0	0	0	0	0	0			2921	979	2570	8353	8783	8783	951;952			1
LELEQTYQAKLDSAK	GlyGly (K)	1849.9422	0.94215736	1150	sp|Q03252|LMNB2_HUMAN	yes	yes	0	0	1	0	1							1			32.632	32.632	3	0.025012	7905	20190902_JH_MUT_Ubi_3	63.727	18.898	2211100	0	0	0	0	0	0	2211100	0	0			2922	1150	2571	8354	8784	8784		1150		0
LELLMEVIREGFMNIQK	GlyGly (K)	2176.1384	0.1384311	30		yes	no	0	0	1	0	1		1						1		42.429	42.429	3	0.019669	10444	20190821_JH_MUT_Ubi	55.841	16.184	28424000	0	16895000	0	0	0	0	0	11528000	0	+		2923	30	2572	8355;8356	8785;8786	8785		46		2
LELVHHGPMAVAFEVYDDFLHYK	Oxidation (M)	2745.3261	0.32610853	951	sp|P53634|CATC_HUMAN	yes	yes	0	0	0	1	0								1		45.567	45.567	4	0.011802	13687	20190902_JH_WT_Ubi_2	48.567	32.868	1770300	0	0	0	0	0	0	0	1770300	0			2924	951	2573	8357	8787	8787			595	1
LENEEGVGGLMAIEGR	Oxidation (M)	1688.8039	0.80394931	36		yes	no	0	0	0	1	0						1				8.0474	8.0474	3	0.024846	1913	20190902_JH_MUT_Ubi_2	51.771	8.9279	122260	0	0	0	0	0	122260	0	0	0	+		2925	36	2574	8358	8788	8788			30	1
LENSKNGTAGLIPSPELQEWR	GlyGly (K);Deamidation (NQ)	2453.2187	0.21866657	161	sp|O14936-5|CSKP_HUMAN;sp|O14936-3|CSKP_HUMAN;sp|O14936-4|CSKP_HUMAN;sp|O14936-6|CSKP_HUMAN;sp|O14936-2|CSKP_HUMAN;sp|O14936|CSKP_HUMAN	yes	no	0	1	1	0	1			1	1		1			1	41.543	41.543	3	7.5332E-07	11772	20190902_JH_MUT_Ubi_2	112.53	73.331	44282000	0	0	24335000	4235900	0	7325900	0	0	8385700			2926	161	2575	8359;8360;8361;8362	8789;8790;8791;8792	8790	60	135		4
LEPQATPGPSQAASAFGAGPTQPPHPVVPSPVRPSGGRPEGFLGQR	Unmodified	4583.3422	0.34219138	2232	sp|Q9Y4H2|IRS2_HUMAN	yes	yes	0	0	0	0	2			1					1		38.628	38.628	5	0.0049071	9382	20190821_JH_WT_Ubi	27.546	13.322	7764100	0	0	4326200	0	0	0	0	3437900	0			2927	2232	2576	8363;8364	8793;8794	8793				2
LEQQVPVNQVFGQDEMIDVIGVTK	Oxidation (M)	2701.3633	0.36328189	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	1	0			1					1	1	47.72	47.72	3	3.2772E-08	13134	20190821_JH_WT_Ubi	107.56	78.69	16466000	0	0	8609000	0	0	0	0	2464500	5392800			2928	804	2577	8365;8366;8367	8795;8796;8797	8795			512	3
LEQQVPVNQVFGQDEMIDVIGVTK	Unmodified	2685.3684	0.36836727	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	0	0			1							51.39	51.39	3	0.0010959	14483	20190821_JH_WT_Ubi	66.075	40.531	4168800	0	0	4168800	0	0	0	0	0	0			2929	804	2577	8368	8798	8798				1
LEQTVEQMKQNETTAMKK	GlyGly (K)	2250.0984	0.098416776	1216	sp|Q13137-5|CACO2_HUMAN;sp|Q13137-2|CACO2_HUMAN;sp|Q13137|CACO2_HUMAN;sp|Q13137-3|CACO2_HUMAN;sp|Q13137-4|CACO2_HUMAN	yes	no	0	0	1	0	2									1	28.357	28.357	5	0.032181	7477	20190902_JH_WT_Ubi_3	48.423	7.0754	1171100	0	0	0	0	0	0	0	0	1171100			2930	1216	2578	8369	8799	8799		1281		0
LESEHPDQAQAILSR	Unmodified	1692.8431	0.84311201	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0			1					1	1	28.483	28.483	3	0.0027959	7467	20190902_JH_WT_Ubi_3	81.448	39.907	8302000	0	0	2791200	0	0	0	0	3838400	1672400			2931	1129;1130	2579	8370;8371;8372	8800;8801;8802	8802				2
LESFNGSKTNALNVSQK	2 Deamidation (NQ)	1837.9058	0.90577185	2053	sp|Q9NWV8|BABA1_HUMAN	yes	yes	0	2	0	0	1				1						26.738	26.738	3	0.030124	5911	20190902_JH_EV_Ubi_2	45.438	7.0622	4881600	0	0	0	4881600	0	0	0	0	0			2932	2053	2580	8373	8803	8803	652;653			1
LESLSYQLSGLQKQASAAEDR	GlyGly (K)	2407.1979	0.19793112	1150	sp|Q03252|LMNB2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1	1	1	37.778	37.778	3	1.2559E-36	9022	20190821_JH_WT_Ubi	178.72	140.51	39861000	2940100	6401800	10754000	1189400	0	4532200	4919300	3157400	5966800			2933	1150	2581	8374;8375;8376;8377;8378;8379;8380;8381	8804;8805;8806;8807;8808;8809;8810;8811;8812	8810		1151		9
LETAVNLAWTAGNSNTR	Unmodified	1816.9068	0.9067749	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	0	0								1		40.013	40.013	3	0.0275	11832	20190902_JH_WT_Ubi_2	45.342	11.56	1718300	0	0	0	0	0	0	0	1718300	0			2934	640	2582	8382	8813	8813				1
LEVAQTQAPAATGGEAAAKVK	GlyGly (K)	2124.1175	0.11749596	1573	sp|Q8IVF2|AHNK2_HUMAN;sp|Q8IVF2-3|AHNK2_HUMAN;sp|Q8IVF2-2|AHNK2_HUMAN	yes	no	0	0	1	0	1							1			27.208	27.208	3	0.012672	6102	20190902_JH_MUT_Ubi_3	54.171	16.078	1107400	0	0	0	0	0	0	1107400	0	0			2935	1573	2583	8383	8814	8814		1571		1
LFAQLAGDDMEVSATELMNILNK	2 Oxidation (M)	2554.2295	0.22949053	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	2	0	1						1		1	51.341	51.341	3	0.0068121	14969	20190902_JH_WT_Ubi_3	63.726	28.337	2460100	535930	0	0	0	0	0	758630	0	1165600			2936	410	2584	8384;8385;8386	8815;8816;8817	8817			206;207	1
LFDHPESPTPNPTEPLFLAQAEVYK	Unmodified	2839.4069	0.40686127	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1		1	1		1	1	1	1	47.253	47.253	3	4.4437E-20	12996	20190821_JH_WT_Ubi	140.48	113.16	13030000	1302300	0	2898200	688370	0	2300600	1852100	2635000	1353300			2937	881	2585	8387;8388;8389;8390;8391;8392;8393	8818;8819;8820;8821;8822;8823;8824;8825	8823				8
LFESSENIEDSNNPKTEK	GlyGly (K)	2194.0026	0.0025853601	765	sp|P34910|EVI2B_HUMAN;sp|P34910-2|EVI2B_HUMAN	yes	no	0	0	1	0	1								1		27.514	27.514	3	0.012458	7503	20190902_JH_WT_Ubi_2	59.345	9.7503	2271300	0	0	0	0	0	0	0	2271300	0			2938	765	2586	8394	8826	8826		747		1
LFETQESGDLNEELVKAAANGDVAK	GlyGly (K);Deamidation (NQ)	2762.3246	0.32464778	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	1	1	0	1	1	1	1			1	1			41.148	41.148	3	7.3964E-25	10079	20190821_JH_MUT_Ubi	154.08	103.67	16107000	1841500	3244300	4566300	0	0	3527200	2928100	0	0			2939	1570	2587	8395;8396;8397;8398;8399	8827;8828;8829;8830;8831;8832	8828	512;513	1561		6
LFEVALPEYKQMKQCR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2171.0391	0.039110983	1770	sp|Q96DT5|DYH11_HUMAN	yes	yes	0	2	1	1	2			1							35.637	35.637	3	0.032931	8235	20190821_JH_WT_Ubi	50.843	13.751	0	0	0	0	0	0	0	0	0	0			2940	1770	2588	8400	8833	8833	1183;1184			1
LFIGGLNTETNEKALEAVFGK	GlyGly (K)	2364.2325	0.23252572	799	sp|P38159-3|RBMX_HUMAN;sp|P38159|RBMX_HUMAN;sp|P38159-2|RBMX_HUMAN	yes	no	0	0	1	0	1	1	1	1	1			1			48.166	48.166	3	1.2883E-06	12667	20190821_JH_MUT_Ubi	102.69	63.166	22216000	5557400	7075700	6485300	469280	0	0	2628700	0	0			2941	799	2589	8401;8402;8403;8404;8405	8834;8835;8836;8837;8838	8836		778		5
LFLYDLPEGKSTQPGVIASQVLDLR	GlyGly (K)	2872.5335	0.53345876	2245	sp|Q9Y5S2|MRCKB_HUMAN	yes	yes	0	0	1	0	1			1							50.814	50.814	3	0.0040596	14288	20190821_JH_WT_Ubi	57.768	24.743	1505800	0	0	1505800	0	0	0	0	0	0			2942	2245	2590	8406	8839	8839		2084		1
LFNHLSAVSESIQALGWVAMAPK	Unmodified	2468.2886	0.28860081	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	0	0	0	0		1	1							53.158	53.158	3	0.0011845	15060	20190821_JH_WT_Ubi	67.866	31.342	6636600	0	2162000	4474700	0	0	0	0	0	0			2943	1132	2591	8407;8408	8840;8841	8841				2
LFNHLSAVSESIQALGWVAMAPK	Oxidation (M)	2484.2835	0.28351543	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	0	0	1	0			1			1	1	1	1	50.199	50.199	3	1.4743E-11	14279	20190821_JH_WT_Ubi	124.69	94.501	20256000	0	0	12395000	0	0	1148000	880280	3767900	2064400			2944	1132	2591	8409;8410;8411;8412;8413	8842;8843;8844;8845;8846	8844			704	4
LFNHLSAVSESIQALGWVAMAPK	Deamidation (NQ)	2469.2726	0.27261639	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	1	0	0	0			1						1	47.774	47.774	3	0.0076802	13979	20190902_JH_WT_Ubi_3	60.561	19.238	9336100	0	0	6615600	0	0	0	0	0	2720500			2945	1132	2591	8414;8415	8847;8848	8848	368			2
LFNWIVDNVNQALHSAVK	Unmodified	2067.0902	0.090158996	2233	sp|Q9Y4I1-2|MYO5A_HUMAN;sp|Q9Y4I1|MYO5A_HUMAN;sp|Q9Y4I1-3|MYO5A_HUMAN	yes	no	0	0	0	0	0			1							51.422	51.422	3	0.03064	14485	20190821_JH_WT_Ubi	41.912	9.6276	2140900	0	0	2140900	0	0	0	0	0	0			2946	2233	2592	8416	8849	8849				1
LFPDIPIGYSGHETGIAISVAAVALGAK	Unmodified	2766.4956	0.4956167	2010	sp|Q9NR45|SIAS_HUMAN	yes	yes	0	0	0	0	0		1	1							53.721	53.721	3	3.9559E-05	14279	20190821_JH_MUT_Ubi	78.428	55.634	10353000	0	6001300	4352100	0	0	0	0	0	0			2947	2010	2593	8417;8418	8850;8851	8850				2
LFPNSLDQTDMHGDSEYNIMFGPDICGPGTK	2 Oxidation (M)	3487.5007	0.50065637	702	sp|P27797|CALR_HUMAN	yes	yes	0	0	0	2	0								1		45.26	45.26	3	0.0015266	13601	20190902_JH_WT_Ubi_2	50.802	27.231	1572600	0	0	0	0	0	0	0	1572600	0			2948	702	2594	8419	8852	8852			445;446	1
LFQSNDPTLRR	Deamidation (NQ)	1346.6943	0.69426293	2254	sp|Q9Y678|COPG1_HUMAN	yes	yes	0	1	0	0	1							1			24.859	24.859	3	0.035688	5764	20190902_JH_MUT_Ubi_3	51.092	7.7951	4252300000	0	0	0	0	0	0	4252300000	0	0			2949	2254	2595	8420	8853	8853	708			0
LFSHEGSSFQMFSSEAYGQK	Oxidation (M)	2281.995	0.99499756	471	sp|P08582|TRFM_HUMAN	yes	yes	0	0	0	1	0									1	34.401	34.401	3	0.0022296	9615	20190902_JH_WT_Ubi_3	70.334	43.404	1680300	0	0	0	0	0	0	0	0	1680300			2950	471	2596	8421	8854	8854			272	1
LFTFHADICTLPDTEK	Unmodified	1906.9135	0.91349976	5	CON__P02769	yes	yes	0	0	0	0	0						1	1			40.43	40.43	3	0.0035093	10472	20190902_JH_MUT_Ubi_3	73.887	19.386	6169400	0	0	0	0	0	3762200	2407200	0	0		+	2951	5	2597	8422;8423	8855;8856	8856				2
LFTFLPLPEIDHIMQLHVK	Oxidation (M)	2306.2497	0.24969611	2215	sp|Q9Y2Z4|SYYM_HUMAN	yes	yes	0	0	0	1	0							1	1	1	48.81	48.81	4	0.0037542	14278	20190902_JH_WT_Ubi_3	65.511	34.975	21044000	0	0	0	0	0	0	1757000	7318700	11968000			2952	2215	2598	8424;8425;8426	8857;8858;8859	8859			1147	3
LFVGGLSFDTNEQSLEQVFSK	Unmodified	2344.1587	0.15869207	1267	sp|Q14011|CIRBP_HUMAN;sp|Q14011-2|CIRBP_HUMAN	yes	no	0	0	0	0	0		1								53.635	53.635	2	2.686E-11	14233	20190821_JH_MUT_Ubi	130.02	89.5	965980	0	965980	0	0	0	0	0	0	0			2953	1267	2599	8427	8860	8860				1
LGAAPEEESAYVAGEKR	GlyGly (K)	1889.9119	0.91191986	2181	sp|Q9UNZ2|NSF1C_HUMAN;sp|Q9UNZ2-5|NSF1C_HUMAN;sp|Q9UNZ2-6|NSF1C_HUMAN	yes	no	0	0	1	0	1			1	1			1	1	1	27.28	27.28	3	3.0573E-05	5509	20190821_JH_WT_Ubi	112.62	74.425	32510000	0	0	7855800	2834000	0	0	3541400	9493900	8784800			2954	2181	2600	8428;8429;8430;8431;8432	8861;8862;8863;8864;8865	8863		2038		5
LGCEVLGVSVDSQFTHLAWINTPR	Unmodified	2698.3537	0.35372026	752	sp|P32119|PRDX2_HUMAN	yes	yes	0	0	0	0	0		1	1							50.027	50.027	3	4.6671E-10	13949	20190821_JH_WT_Ubi	119.72	83.612	21056000	0	4848100	16208000	0	0	0	0	0	0			2955	752	2601	8433;8434	8866;8867	8867				2
LGDLYEEEMR	Oxidation (M)	1269.5547	0.55471749	474	sp|P08670|VIME_HUMAN	yes	yes	0	0	0	1	0	1									30.217	30.217	2	0.027888	6481	20190821_JH_EV_Ubi	63.426	33.617	843890	843890	0	0	0	0	0	0	0	0			2956	474	2602	8435	8868	8868			277	0
LGDVISIQPCPDVKYGK	GlyGly (K)	2002.0194	0.019361819	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	36.128	36.128	3	2.4778E-14	8504	20190821_JH_WT_Ubi	156.72	110.39	290500000	24117000	23136000	59796000	14837000	14562000	32001000	32192000	55383000	34473000			2957	974	2603	8436;8437;8438;8439;8440;8441;8442;8443;8444	8869;8870;8871;8872;8873;8874;8875;8876;8877	8875		961;962		9
LGEHNIDVLEGNEQFINAAK	Unmodified	2210.0968	0.096760517	1	CON__P00761	yes	yes	0	0	0	0	0	1		1		1			1	1	39.418	39.418	3	7.4739E-40	11703	20190902_JH_WT_Ubi_2	190.8	128.93	130090000	7469400	0	58438000	0	3837900	0	0	28279000	32066000		+	2958	1	2604	8445;8446;8447;8448;8449	8878;8879;8880;8881;8882	8881				5
LGEHNIDVLEGNEQFINAAK	Deamidation (NQ)	2211.0808	0.080776102	1	CON__P00761	yes	yes	0	1	0	0	0			1						1	40.16	40.16	3	0.00026436	10050	20190821_JH_WT_Ubi	87.323	44.641	7890400	0	0	5252600	0	0	0	0	0	2637700		+	2959	1	2604	8450;8451	8883;8884	8883	0;710			2
LGEIVTTIPTIGFNVETVEYK	Deamidation (NQ)	2323.2199	0.21989534	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	1	0	0	0	1					1				53.274	53.274	3	1.3283E-07	14856	20190902_JH_MUT_Ubi_2	117.55	86.434	4100800	2292000	0	0	0	0	1808800	0	0	0			2960	1018	2605	8452;8453	8885;8886	8886	334			1
LGEIVTTIPTIGFNVETVEYK	Unmodified	2322.2359	0.23587976	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	0	0	0	0		1	1				1		1	53.088	53.088	3	3.5969E-22	14124	20190821_JH_MUT_Ubi	154.46	132.09	15290000	0	2286500	9772700	0	0	0	875710	0	2355000			2961	1018	2605	8454;8455;8456;8457	8887;8888;8889;8890	8887				4
LGEKDTSLYRPALEELR	GlyGly (K)	2103.096	0.096032235	1224	sp|Q13200|PSMD2_HUMAN	yes	yes	0	0	1	0	2						1				33.738	33.738	4	0.028024	8774	20190902_JH_MUT_Ubi_2	46.41	19.203	1734100	0	0	0	0	0	1734100	0	0	0			2962	1224	2606	8458	8891	8891		1291		1
LGELSDKIGSTIDDTISK	GlyGly (K)	2005.0215	0.021529888	1299	sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN;sp|Q14677|EPN4_HUMAN	yes	no	0	0	1	0	1	1					1				39.593	39.593	3	0.0094952	10935	20190902_JH_MUT_Ubi_2	61.87	32.507	3768900	928220	0	0	0	0	2840700	0	0	0			2963	1299	2607	8459;8460	8892;8893	8893		1363		2
LGEVVNTHGPVEPDK	Unmodified	1589.8049	0.80493559	733	sp|P30419-2|NMT1_HUMAN;sp|P30419|NMT1_HUMAN	yes	no	0	0	0	0	0									1	26.842	26.842	3	0.036473	7039	20190902_JH_WT_Ubi_3	43.03	10.3	3584600	0	0	0	0	0	0	0	0	3584600			2964	733	2608	8461	8894	8894				1
LGFEDVIAEPVTTHSFDK	Unmodified	2003.984	0.98402217	921	sp|P51636|CAV2_HUMAN;sp|P51636-2|CAV2_HUMAN	yes	no	0	0	0	0	0									1	43.219	43.219	3	0.037104	12600	20190902_JH_WT_Ubi_3	46.121	12.816	0	0	0	0	0	0	0	0	0	0			2965	921	2609	8462	8895	8895				1
LGGLTQAPGNPVLAVQINQDK	Unmodified	2132.159	0.15896684	688	sp|P26368-2|U2AF2_HUMAN;sp|P26368|U2AF2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	42.744	42.744	3	5.4727E-22	11338	20190821_JH_EV_Ubi	152.04	96.284	23138000	5432300	2224300	4064400	2328400	1881800	2385000	1408400	1831300	1581800			2966	688	2610	8463;8464;8465;8466;8467;8468;8469;8470;8471	8896;8897;8898;8899;8900;8901;8902;8903;8904	8896				9
LGGPSALPKGLAQSPLCR	GlyGly (K)	1935.036	0.036014936	1768	sp|Q96CX6|LRC58_HUMAN	yes	yes	0	0	1	0	1	1		1			1	1			35.526	35.526	3	2.9618E-08	9414	20190902_JH_MUT_Ubi_2	124.04	96.892	9897000	1272400	0	2310000	0	0	3954000	2360600	0	0			2967	1768	2611	8472;8473;8474;8475	8905;8906;8907;8908	8906		1744		4
LGGSAVISLEGK	Unmodified	1129.6343	0.63428844	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	0	0	0								1		34.106	34.106	2	4.8545E-05	9811	20190902_JH_WT_Ubi_2	123.51	64.164	11472000	0	0	0	0	0	0	0	11472000	0			2968	667	2612	8476	8909	8909				0
LGGSPTSLGTWGSWIGPDHDK	Unmodified	2167.0334	0.033431979	552	sp|P14314-2|GLU2B_HUMAN;sp|P14314|GLU2B_HUMAN	yes	no	0	0	0	0	0	1	1	1						1	43.106	43.106	3	2.3731E-08	11227	20190821_JH_WT_Ubi	111.65	78.957	16123000	2448000	1394300	9170100	0	0	0	0	0	3111000			2969	552	2613	8477;8478;8479;8480	8910;8911;8912;8913	8912				4
LGGTIDDCELVEGLVLTQK	Unmodified	2059.0507	0.050721527	913	sp|P50991|TCPD_HUMAN;sp|P50991-2|TCPD_HUMAN	yes	no	0	0	0	0	0			1						1	49.77	49.77	3	0.00011534	13924	20190821_JH_WT_Ubi	94.922	44.313	2909000	0	0	1547200	0	0	0	0	0	1361800			2970	913	2614	8481;8482	8914;8915	8914				2
LGIHEDSTNR	Unmodified	1140.5523	0.55234972	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0				1		1				19.024	19.024	3	0.011022	3961	20190902_JH_EV_Ubi_2	82.645	55.972	912120	0	0	0	912120	0	0	0	0	0			2971	465	2615	8483;8484	8916;8917	8916				2
LGKAHATTSNTVSK	GlyGly (K)	1527.8005	0.80051892	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	0	1			1							12.04	12.04	3	6.9236E-05	2280	20190821_JH_WT_Ubi	121.18	92.17	7734500	0	0	7734500	0	0	0	0	0	0			2972	1476	2616	8485	8918	8918		1486;1489		1
LGLALNFSVFHYEIANSPEEAISLAK	Unmodified	2832.4698	0.46979588	750	sp|P31947-2|1433S_HUMAN;sp|P31947|1433S_HUMAN	yes	no	0	0	0	0	0			1		1				1	52.982	52.982	3	1.1665E-26	15341	20190902_JH_WT_Ubi_3	154.92	110.86	6221500	0	0	2618900	0	1698200	0	0	0	1904500			2973	750	2617	8486;8487;8488	8919;8920;8921;8922	8922				4
LGLALNYSVFYYEIQNAPEQACHLAK	Unmodified	3011.4851	0.48512836	1034	sp|P61981|1433G_HUMAN	yes	yes	0	0	0	0	0			1					1	1	51.368	51.368	3	3.9046E-10	14449	20190821_JH_WT_Ubi	103.28	73.28	20580000	0	0	14783000	0	0	0	0	4493900	1303100			2974	1034	2618	8489;8490;8491	8923;8924;8925	8923				3
LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR	Oxidation (M)	3562.5265	0.52645623	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	1	0	1		1	1	1			1	1	46.574	46.574	3	3.8437E-39	14069	20190902_JH_WT_Ubi_2	150.44	129.52	23542000	1094600	0	6401200	939210	1663700	0	0	6184800	7258100			2975	455	2619	8492;8493;8494;8495;8496;8497	8926;8927;8928;8929;8930;8931;8932;8933	8931			258	7
LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR	Unmodified	3546.5315	0.53154161	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	0	0								1	1	50.577	50.577	3	8.8559E-15	15172	20190902_JH_WT_Ubi_2	111.09	94.112	4437900	0	0	0	0	0	0	0	2147600	2290300			2976	455	2619	8498;8499	8934;8935;8936	8934				3
LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR	Unmodified	3531.6377	0.63766166	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1	1	1	1	1	51.61	51.61	3	4.072E-18	15010	20190902_JH_WT_Ubi_3	113.71	76.286	30033000	1401400	0	6536400	1183400	3276400	1330600	1952500	5617500	8735000			2977	465	2620	8500;8501;8502;8503;8504;8505;8506;8507	8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948	8947				12
LGLHPLEVSVQDHR	Unmodified	1598.8529	0.85288884	21		yes	yes	0	0	0	0	0								1		45.635	45.635	3	0.0015275	13710	20190902_JH_WT_Ubi_2	93.623	19.163	3030900	0	0	0	0	0	0	0	3030900	0	+		2978	21	2621	8508	8949	8949				1
LGLYSKTSQSVSGEEIDAMDVQQLSQIVPK	Oxidation (M);GlyGly (K);Deamidation (NQ)	3380.6657	0.66573108	1117	sp|P98194-2|AT2C1_HUMAN;sp|P98194-4|AT2C1_HUMAN;sp|P98194|AT2C1_HUMAN;sp|P98194-3|AT2C1_HUMAN;sp|P98194-5|AT2C1_HUMAN;sp|P98194-8|AT2C1_HUMAN;sp|P98194-9|AT2C1_HUMAN;sp|P98194-6|AT2C1_HUMAN;sp|P98194-7|AT2C1_HUMAN	yes	no	0	1	1	1	1			1							44.847	44.847	3	0.0002554	11966	20190821_JH_WT_Ubi	83.216	56.367	0	0	0	0	0	0	0	0	0	0			2979	1117	2622	8509	8950	8950	980	1112	692	1
LGNALGMIGVAGGLAATLGVLK	Oxidation (M)	2011.15	0.14998206	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	1	0	1		1							53.568	53.568	3	0.013533	15237	20190821_JH_WT_Ubi	50.232	23.083	4854700	2816800	0	2037900	0	0	0	0	0	0			2980	1236	2623	8510;8511	8951;8952	8952			773	2
LGNALGMIGVAGGLAATLGVLK	Unmodified	1995.1551	0.15506744	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	0	0		1								55.903	55.903	3	0.00061783	14896	20190821_JH_MUT_Ubi	73.346	48.292	1547000	0	1547000	0	0	0	0	0	0	0			2981	1236	2623	8512	8953	8953				1
LGNVRPLLHGSPVQNIVGILCR	Unmodified	2411.3584	0.35835213	2151	sp|Q9UKK3|PARP4_HUMAN	yes	yes	0	0	0	0	1		1					1		1	43.237	43.237	4	0.0071432	11002	20190821_JH_MUT_Ubi	58.577	39.533	16509000	0	5084100	0	0	0	0	4534400	0	6890700			2982	2151	2624	8513;8514;8515	8954;8955;8956	8954				3
LGPHTVLTFIFLEQMNK	Oxidation (M)	2003.055	0.055019043	1145	sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN	yes	no	0	0	0	1	0	1		1					1	1	47.889	47.889	3	7.0516E-05	13116	20190821_JH_EV_Ubi	109.07	71.045	12926000	1334500	0	5450200	0	0	0	0	2098300	4043000			2983	1145	2625	8516;8517;8518;8519	8957;8958;8959;8960	8957			715	4
LGPHTVLTFIFLEQMNK	GlyGly (K);2 Deamidation (NQ)	2103.0711	0.071063038	1145	sp|Q02978-2|M2OM_HUMAN;sp|Q02978|M2OM_HUMAN	yes	no	0	2	1	0	0								1		54.06	54.06	2	0.01184	16099	20190902_JH_WT_Ubi_2	68.786	18.432	0	0	0	0	0	0	0	0	0	0			2984	1145	2625	8520	8961	8961	374;990	1140		1
LGQGVLVQVSPSLVK	Unmodified	1522.9083	0.90827845	1265	sp|Q13868-3|EXOS2_HUMAN;sp|Q13868|EXOS2_HUMAN	yes	no	0	0	0	0	0						1				41.237	41.237	2	0.0021314	11728	20190902_JH_MUT_Ubi_2	90.697	66.846	845400	0	0	0	0	0	845400	0	0	0			2985	1265	2626	8521	8962	8962				1
LGQSDPAPLQHQMDIYQK	Oxidation (M)	2083.9997	0.99968901	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	1	0								1	1	28.831	28.831	3	0.00070322	8000	20190902_JH_WT_Ubi_2	84.41	58.82	22810000	0	0	0	0	0	0	0	12825000	9984300			2986	715	2627	8522;8523	8963;8964	8963			448	2
LGSSGLGSASSIQAAVR	Unmodified	1559.8267	0.82673367	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	0	0	0						1				33.792	33.792	2	0.0002802	8801	20190902_JH_MUT_Ubi_2	102.73	52.537	762360	0	0	0	0	0	762360	0	0	0			2987	1539	2628	8524	8965	8965				1
LGSVLVLWDINKEGNEETCK	GlyGly (K)	2417.1897	0.18967462	1615	sp|Q8N3Y7-2|RDHE2_HUMAN;sp|Q8N3Y7|RDHE2_HUMAN	yes	no	0	0	1	0	1		1								43.477	43.477	3	0.00010001	10872	20190821_JH_MUT_Ubi	92.977	59.669	1050500	0	1050500	0	0	0	0	0	0	0			2988	1615	2629	8525	8966	8966		1617		1
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	Unmodified	3667.8028	0.80279088	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	0	0	1	3	2			1	1	1	1	45.182	45.182	4;5	0.0002982	13332	20190902_JH_WT_Ubi_2	51.617	35.216	699220000	2561900	54504000	471740000	0	0	26068000	27499000	58459000	58383000			2989	373	2630	8526;8527;8528;8529;8530;8531;8532;8533;8534;8535	8967;8968;8969;8970;8971;8972;8973;8974;8975;8976	8975				10
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	Oxidation (M)	3683.7977	0.7977055	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	1	0		1					1			42.897	42.897	4;5	0.0017616	10740	20190902_JH_MUT_Ubi_3	47.319	20.324	105480000	0	3913500	0	0	0	0	101570000	0	0			2990	373	2630	8536;8537	8977;8978	8978			168	2
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	Oxidation (M);Deamidation (NQ)	3684.7817	0.78172109	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	1	0	1	0			1							42.017	42.017	3	0.005426	10809	20190821_JH_WT_Ubi	47.723	32.204	3677700	0	0	3677700	0	0	0	0	0	0			2991	373	2630	8538	8979	8979	119		168	1
LGYSPLHQAAQQGHTDIVTLLLK	Unmodified	2502.3595	0.35945756	584	sp|P16157-2|ANK1_HUMAN;sp|P16157-8|ANK1_HUMAN;sp|P16157-12|ANK1_HUMAN;sp|P16157-21|ANK1_HUMAN;sp|P16157|ANK1_HUMAN;sp|P16157-3|ANK1_HUMAN;sp|P16157-16|ANK1_HUMAN;sp|P16157-5|ANK1_HUMAN;sp|P16157-15|ANK1_HUMAN;sp|P16157-11|ANK1_HUMAN;sp|P16157-10|ANK1_HUMAN;sp|P16157-13|ANK1_HUMAN;sp|P16157-4|ANK1_HUMAN;sp|P16157-7|ANK1_HUMAN;sp|P16157-6|ANK1_HUMAN;sp|P16157-9|ANK1_HUMAN;sp|P16157-14|ANK1_HUMAN	yes	no	0	0	0	0	0						1				41.89	41.89	4	0.036316	11975	20190902_JH_MUT_Ubi_2	29.729	14.639	3331300	0	0	0	0	0	3331300	0	0	0			2992	584	2631	8539	8980	8980				1
LGYTHLYSSTQVSVRPLQHTQYER	Unmodified	2862.4413	0.44128971	805	sp|P39656-2|OST48_HUMAN;sp|P39656-3|OST48_HUMAN;sp|P39656|OST48_HUMAN	yes	no	0	0	0	0	1			1						1	30.92	30.92	4;5	0.019569	6648	20190821_JH_WT_Ubi	38.736	17.121	26053000	0	0	22646000	0	0	0	0	0	3407000			2993	805	2632	8540;8541	8981;8982	8981				2
LHDFVSKTVIK	GlyGly (K)	1399.7823	0.78234966	1930	sp|Q9H0H5|RGAP1_HUMAN	yes	yes	0	0	1	0	1		1								26.563	26.563	3	0.023625	4683	20190821_JH_MUT_Ubi	69.65	17.724	391290	0	391290	0	0	0	0	0	0	0			2994	1930	2633	8542	8983	8983		1867		1
LHDFVSKTVIKPESCVPCGK	GlyGly (K)	2414.2086	0.20863593	1930	sp|Q9H0H5|RGAP1_HUMAN	yes	yes	0	0	1	0	2	1	1	1		1	1				29	29	4	5.6838E-05	6819	20190902_JH_MUT_Ubi_2	95.873	69.922	26335000	3988000	3694400	6302700	0	4027100	8322800	0	0	0			2995	1930	2634	8543;8544;8545;8546;8547	8984;8985;8986;8987;8988	8987		1867		5
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	1099;448;1878;1410	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|A6NNZ2|TBB8L_HUMAN;sp|Q9BUF5|TBB6_HUMAN;sp|P07437|TBB5_HUMAN;sp|Q3ZCM7|TBB8_HUMAN	no	no	0	0	0	1	0	1	1								42.41	42.41	3	0.015274	11115	20190821_JH_EV_Ubi	65.809	26.3	1114000	1114000	0	0	0	0	0	0	0	0			2996	1099;1878;448;1410	2635	8548;8549	8989;8990	8989			250	2
LHGSVGGAQNLSALGALVSLSNAR	Unmodified	2291.2346	0.2345914	1598	sp|Q8IZL8|PELP1_HUMAN	yes	yes	0	0	0	0	0							1			44.301	44.301	3	0.0046373	11750	20190902_JH_MUT_Ubi_3	55.128	32.815	1614700	0	0	0	0	0	0	1614700	0	0			2997	1598	2636	8550	8991	8991				1
LHHVSSLAWLDEHTLVTTSHDASVK	Unmodified	2782.4038	0.40384158	268	sp|O75083|WDR1_HUMAN;sp|O75083-3|WDR1_HUMAN	yes	no	0	0	0	0	0	1		1			1		1	1	34.033	34.033	4;5	2.491E-07	7763	20190821_JH_WT_Ubi	96.881	64.333	55701000	2624800	0	19622000	0	0	2516500	0	15153000	15785000			2998	268	2637	8551;8552;8553;8554;8555	8992;8993;8994;8995;8996	8994				5
LHIIEVGTPPTGNQPFPK	Unmodified	1944.0469	0.046897198	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0			1					1		37.532	37.532	3	0.0017971	8948	20190821_JH_WT_Ubi	73.833	38.53	44608000	0	0	26934000	0	0	0	0	17674000	0			2999	1123	2638	8556;8557	8997;8998	8997				2
LHIQNPSFSQINQLVSTIMSASTTTLR	Oxidation (M)	3002.5495	0.54951953	659	sp|Q9NRH3|TBG2_HUMAN;sp|P23258|TBG1_HUMAN	yes	no	0	0	0	1	0		1	1							52.787	52.787	3	2.5623E-10	13988	20190821_JH_MUT_Ubi	104.26	70.427	4359400	0	1706200	2653200	0	0	0	0	0	0			3000	659	2639	8558;8559	8999;9000	8999			410	2
LHLAQLLEEAEEQTVSLSSCTVDLKK	GlyGly (K)	3054.5543	0.55433014	57		yes	yes	0	0	1	0	1		1								52.071	52.071	3	0.025916	13776	20190821_JH_MUT_Ubi	42.705	10.157	3043400	0	3043400	0	0	0	0	0	0	0	+		3001	57	2640	8560	9001	9001		58;59		1
LHLSGIDANPNALFPPVEFPAPR	Unmodified	2471.2961	0.29612903	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	49.4	49.4	3	8.9232E-05	12095	20190902_JH_EV_Ubi_3	83.251	43.665	22407000	4222600	2771000	2180400	1246700	3068700	1671500	2332200	1482500	3431000			3002	881	2641	8561;8562;8563;8564;8565;8566;8567;8568;8569	9002;9003;9004;9005;9006;9007;9008;9009;9010	9004				9
LHLSKAKMAHR	Oxidation (M);2 GlyGly (K)	1534.8151	0.81506354	84	sp|P0CI26|TR49C_HUMAN;sp|P0CI25|TRI49_HUMAN;sp|C9J1S8|TR49D_HUMAN;sp|A6NDI0|TR49B_HUMAN	yes	no	0	0	2	1	2		1								31.513	31.513	3	0.015147	6413	20190821_JH_MUT_Ubi	90.827	23.101	2302600	0	2302600	0	0	0	0	0	0	0			3003	84	2642	8570	9011	9011		75;76	42	1
LHNFHQLSAPQPCFTFSHPNR	Unmodified	2534.2026	0.20257977	150	sp|O14744-4|ANM5_HUMAN;sp|O14744-3|ANM5_HUMAN;sp|O14744-5|ANM5_HUMAN;sp|O14744-2|ANM5_HUMAN;sp|O14744|ANM5_HUMAN	yes	no	0	0	0	0	0		1	1			1				31.845	31.845	4	0.0019926	6670	20190821_JH_MUT_Ubi	64.26	43.254	34476000	0	3601500	25688000	0	0	5186700	0	0	0			3004	150	2643	8571;8572;8573	9012;9013;9014	9012				3
LHVGYLQPLVAVQVSFAPNNTGK	Unmodified	2451.3274	0.32742915	962	sp|P54709|AT1B3_HUMAN	yes	yes	0	0	0	0	0			1							46.75	46.75	3	8.4002E-08	12737	20190821_JH_WT_Ubi	109.22	79.777	11776000	0	0	11776000	0	0	0	0	0	0			3005	962	2644	8574	9015	9015				1
LIAQACVSIFPDSGHFNVDNIR	Unmodified	2472.222	0.22197781	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	0	0	0		1	1							44.776	44.776	3	3.3025E-07	11903	20190821_JH_WT_Ubi	106.75	69.658	21128000	0	6837700	14291000	0	0	0	0	0	0			3006	912	2645	8575;8576	9016;9017	9017				2
LIAYGHLTGNAPDSTTPGK	Unmodified	1911.969	0.96904081	2258	sp|Q9Y6D6|BIG1_HUMAN	yes	yes	0	0	0	0	0			1							30.257	30.257	3	0.031952	6385	20190821_JH_WT_Ubi	40.186	3.0301	1523700	0	0	1523700	0	0	0	0	0	0			3007	2258	2646	8577	9018	9018				1
LICCDILDVLDKHLIPAANTGESK	GlyGly (K)	2808.415	0.41499989	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	1	0	1	1	1								48.373	48.373	4	0.0084738	13144	20190821_JH_EV_Ubi	50.232	26.935	5512400	2173900	3338500	0	0	0	0	0	0	0			3008	1043	2647	8578;8579	9019;9020	9019		1019		2
LIDLHTNVATAVLEHIK	Unmodified	1886.0625	0.062547262	1698	sp|Q8WVM8-2|SCFD1_HUMAN;sp|Q8WVM8-3|SCFD1_HUMAN;sp|Q8WVM8|SCFD1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	42.623	42.623	4	0.00027398	11297	20190821_JH_EV_Ubi	96.666	64.39	29684000	10223000	2623700	7313700	1832100	2210400	1285400	1217300	1400000	1578600			3009	1698	2648	8580;8581;8582;8583;8584;8585;8586;8587;8588	9021;9022;9023;9024;9025;9026;9027;9028;9029	9021				9
LIFAGKQLEDGR	GlyGly (K)	1459.7783	0.77832691	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1	1	2		1	1	1	2	2	1	29.317	29.317	3	4.5884E-05	7044	20190821_JH_EV_Ubi	134.13	74.56	17922000000	1021000000	2345300000	0	755450000	892920000	3659900000	3512600000	3246600000	2487700000			3010	1074	2649	8589;8590;8591;8592;8593;8594;8595;8596;8597;8598;8599	9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042	9030		1052		13
LIFAGKQLEDGR	GlyGly (K);Deamidation (NQ)	1460.7623	0.7623425	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	1	1	0	1				1	1	1	1	1	1	32.436	32.436	3	0.0032536	8180	20190902_JH_MUT_Ubi_2	119.74	60.479	566080000	0	0	0	24436000	28695000	124560000	116690000	139500000	132190000			3011	1074	2649	8600;8601;8602;8603;8604;8605	9043;9044;9045;9046;9047;9048	9045	967	1052		6
LIFAGKQLEDGRTLSDYNIQK	GlyGly (K)	2522.3129	0.3129013	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	2		1	1	1	1	1	1			36.125	36.125	4	1.2533E-05	8875	20190902_JH_EV_Ubi_3	88.951	61.939	785770000	0	155100000	99231000	79404000	81465000	219640000	150920000	0	0			3012	1074	2650	8606;8607;8608;8609;8610;8611	9049;9050;9051;9052;9053;9054	9050		1052;1053		6
LIFAGKQLEDGRTLSDYNIQK	GlyGly (K);Deamidation (NQ)	2523.2969	0.29691689	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	1	1	0	2						1	1			36.579	36.579	4	0.014995	9907	20190902_JH_MUT_Ubi_2	52.93	33.675	28965000	0	0	0	0	0	14973000	13992000	0	0			3013	1074	2650	8612;8613	9055;9056	9055	347;967;968	1052;1053		2
LIGDAAKNQVALNPQNTVFDAK	GlyGly (K)	2440.271	0.27103649	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			37.466	37.466	3	8.77E-05	9399	20190902_JH_MUT_Ubi_3	85.224	44.709	10549000	1703100	3424000	0	0	0	2961000	2460700	0	0			3014	503	2651	8614;8615;8616;8617	9057;9058;9059;9060	9060		488;489		4
LIGDAAKNQVALNPQNTVFDAKR	Unmodified	2482.3292	0.32922007	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	0	0	2							1	1		34.09	34.09	4	0.017075	9945	20190902_JH_WT_Ubi_2	49.655	24.146	7249200	0	0	0	0	0	0	3687900	3561300	0			3015	503	2652	8618;8619	9061;9062	9062				2
LIGDAAKNQVAMNPTNTVFDAK	Oxidation (M);GlyGly (K)	2447.2115	0.2114727	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	1	1	1	1	1	1		1	1	1	1	34.235	34.235	3	3.5966E-22	8324	20190902_JH_MUT_Ubi_3	155.16	124.97	80475000	12604000	7384700	7465100	10402000	0	11716000	12612000	9863100	8428900			3016	519	2653	8620;8621;8622;8623;8624;8625;8626;8627	9063;9064;9065;9066;9067;9068;9069;9070;9071;9072	9069		517;518	307	10
LIGDAAKNQVAMNPTNTVFDAK	GlyGly (K)	2431.2166	0.21655808	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	0	1	1	1				1	1	1	1	36.978	36.978	3	4.3698E-16	9946	20190902_JH_MUT_Ubi_2	143.09	98.522	18682000	2639600	4085100	0	0	0	4230500	4938900	2788400	0			3017	519	2653	8628;8629;8630;8631;8632;8633	9073;9074;9075;9076;9077;9078	9075		517;518		6
LIGQIVSSITASLR	Unmodified	1456.8613	0.86132826	1515	sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN	yes	no	0	0	0	0	0			1							50.52	50.52	3	0.0056532	14191	20190821_JH_WT_Ubi	82.483	40.274	0	0	0	0	0	0	0	0	0	0			3018	1515	2654	8634	9079	9079				1
LIHFSGVALGEACTIVLR	Unmodified	1955.0663	0.066252432	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	0	0		1	1							44.828	44.828	3	4.0241E-11	11917	20190821_JH_WT_Ubi	139.34	102.17	14530000	0	6550900	7979200	0	0	0	0	0	0			3019	1105	2655	8635;8636	9080;9081	9081				2
LIIMDNLGPEQERDTGQSPQKGLQR	Oxidation (M);3 Deamidation (NQ)	2841.3815	0.38145115	237	sp|O60292|SI1L3_HUMAN	yes	yes	0	3	0	1	2			1							36.825	36.825	3	0.030736	8691	20190821_JH_WT_Ubi	41.76	7.6116	0	0	0	0	0	0	0	0	0	0			3020	237	2656	8637	9082	9082	782;783;784		103	1
LIIMDNLGPEQERDTGQSPQKGLQR	2 Deamidation (NQ)	2824.4025	0.40252095	237	sp|O60292|SI1L3_HUMAN	yes	yes	0	2	0	0	2								1		40.266	40.266	3	0.033106	11928	20190902_JH_WT_Ubi_2	50.851	23.132	1576000	0	0	0	0	0	0	0	1576000	0			3021	237	2656	8638	9083	9083	782;783;784			1
LIKNNASTDYDLSDK	GlyGly (K)	1809.8745	0.87447172	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	1	0	1						1	1			26.015	26.015	3	0.0078594	5732	20190902_JH_MUT_Ubi_3	72.891	36.599	2807000	0	0	0	0	0	1090200	1716900	0	0			3022	804	2657	8639;8640	9084;9085	9085		784		2
LIPITIIKQVIQNVTHK	2 GlyGly (K);Deamidation (NQ)	2186.2787	0.27868805	1542	sp|Q7Z7G0|TARSH_HUMAN	yes	yes	0	1	2	0	1	1									41.871	41.871	3	0.022197	10857	20190821_JH_EV_Ubi	55.173	38.874	520810	520810	0	0	0	0	0	0	0	0			3023	1542	2658	8641	9086	9086	494	1532;1533		0
LIQEEYEGICKLLQAAK	GlyGly (K)	2119.0983	0.098340421	1118	sp|P98196|AT11A_HUMAN	yes	yes	0	0	1	0	1	1	1					1			45.24	45.24	3	0.00057519	11688	20190821_JH_MUT_Ubi	94.717	57.947	4093200	958160	1933100	0	0	0	0	1201900	0	0			3024	1118	2659	8642;8643;8644	9087;9088;9089	9088		1114;1115		3
LISGDAEPTPEQEEKALLSSPEGEEK	GlyGly (K)	2896.3826	0.38255659	295	sp|O75592-2|MYCB2_HUMAN;sp|O75592|MYCB2_HUMAN	yes	no	0	0	1	0	1				1	1		1			37.614	37.614	3	5.1493E-05	9333	20190902_JH_EV_Ubi_3	83.602	45.019	9095600	0	0	0	2352700	3869700	0	2873200	0	0			3025	295	2660	8645;8646;8647	9090;9091;9092	9091		282		3
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	1097;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q9H853|TBA4B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0	1	1	1		1	1	1	1	2	51.753	51.753	2;3	1.0526E-47	14623	20190821_JH_WT_Ubi	209.79	178.2	101640000	594640	2624600	24863000	0	625980	786060	1465000	6430900	64251000			3026	1097;1098;1858	2661	8648;8649;8650;8651;8652;8653;8654;8655;8656	9093;9094;9095;9096;9097;9098;9099;9100;9101	9098				9
LIVLVPPSKPTVNIPSSATIGNR	Unmodified	2372.3791	0.37913037	2251	sp|Q9Y624|JAM1_HUMAN	yes	yes	0	0	0	0	1	1			1	1	1	1			41.924	41.924	3	9.2422E-07	11103	20190821_JH_EV_Ubi	107.39	75.21	105370000	46190000	0	0	18706000	24242000	11730000	4502200	0	0			3027	2251	2662	8657;8658;8659;8660;8661	9102;9103;9104;9105;9106;9107	9102				6
LIYAGKILNDDTALK	GlyGly (K)	1760.9672	0.96724989	964	sp|P54727|RD23B_HUMAN	yes	yes	0	0	1	0	1						1				36.463	36.463	3	0.030939	9864	20190902_JH_MUT_Ubi_2	53.136	13.112	2505400	0	0	0	0	0	2505400	0	0	0			3028	964	2663	8662	9108	9108		933		1
LIYAGKILSDDVPIR	GlyGly (K)	1785.9989	0.99888437	963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN	yes	no	0	0	1	0	1			1			1	1	1	1	40.018	40.018	3	7.1105E-06	10232	20190902_JH_MUT_Ubi_3	129.76	88.384	39246000	0	0	16688000	0	0	3874800	4507800	7799100	6376100			3029	963	2664	8663;8664;8665;8666;8667	9109;9110;9111;9112;9113	9110		929		5
LKDSAVLDQSAK	GlyGly (K)	1387.7307	0.73070802	1896	sp|Q9BXF6|RFIP5_HUMAN	yes	yes	0	0	1	0	1						1	1			22.566	22.566	2	0.0031202	4802	20190902_JH_MUT_Ubi_3	101.38	30.652	2342800	0	0	0	0	0	1169400	1173400	0	0			3030	1896	2665	8668;8669	9114;9115	9115		1834		0
LKFNEFVNTVPTIGFNTEKIK	GlyGly (K);Deamidation (NQ)	2553.3479	0.34788983	989	sp|P56559|ARL4C_HUMAN;sp|P56559-2|ARL4C_HUMAN	yes	no	0	1	1	0	2			1							47.736	47.736	4	0.034001	13118	20190821_JH_WT_Ubi	44.468	9.8185	7118100	0	0	7118100	0	0	0	0	0	0			3031	989	2666	8670	9116	9116	325			1
LKGPQITGPSLEGDLGLK	GlyGly (K)	1936.0629	0.062941193	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								38.996	38.996	3	0.0039752	9110	20190821_JH_MUT_Ubi	70.96	29.582	1041500	0	1041500	0	0	0	0	0	0	0			3032	1190	2667	8671	9117	9117		1223		1
LKLGEIVTTIPTIGFNVETVEYK	GlyGly (K)	2677.4578	0.45783421	1018	sp|P84077|ARF1_HUMAN;sp|P61204|ARF3_HUMAN;sp|P84085|ARF5_HUMAN;sp|P18085|ARF4_HUMAN	yes	no	0	0	1	0	1		1	1							51.545	51.545	3	4.4277E-06	14494	20190821_JH_WT_Ubi	93.388	72.342	2904100	0	1227100	1677000	0	0	0	0	0	0			3033	1018	2668	8672;8673	9118;9119;9120	9120		1004		3
LKPPFPADVGVFGCPTTVANVETVAVSPTICR	Unmodified	3398.7367	0.73666838	898	sp|P49821-2|NDUV1_HUMAN;sp|P49821|NDUV1_HUMAN	yes	no	0	0	0	0	1			1						1	49.453	49.453	3	0.00035303	14427	20190902_JH_WT_Ubi_3	65.284	40.965	6454700	0	0	3724300	0	0	0	0	0	2730400			3034	898	2669	8674;8675	9121;9122;9123	9123				2
LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	GlyGly (K)	3335.4172	0.41721282	559	sp|P14866|HNRPL_HUMAN	yes	yes	0	0	1	0	1	1									19.224	19.224	4	1.4693E-05	3206	20190821_JH_EV_Ubi	66.666	55.914	1092900	1092900	0	0	0	0	0	0	0	0			3035	559	2670	8676	9124	9124		549		1
LKTVTSGSIQPVTQAPQAGQMVDTK	Oxidation (M);GlyGly (K)	2714.3909	0.39089363	1896	sp|Q9BXF6|RFIP5_HUMAN	yes	yes	0	0	1	1	1		1								30.726	30.726	3	0.0015547	6127	20190821_JH_MUT_Ubi	65.753	31.095	408370	0	408370	0	0	0	0	0	0	0			3036	1896	2671	8677	9125	9125		1835;1836	1040	1
LLAELPASVHALTGVDLSK	Unmodified	1933.0884	0.088427662	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	0	0	0				1						44.775	44.775	3	0.015	11339	20190902_JH_EV_Ubi_2	50.608	26.524	751130	0	0	0	751130	0	0	0	0	0			3037	1288	2672	8678	9126	9126				1
LLALLVIPPAITPGTDQLGMFTHK	Oxidation (M)	2561.4291	0.42911703	1891	sp|Q9BWS9|CHID1_HUMAN;sp|Q9BWS9-2|CHID1_HUMAN	yes	no	0	0	0	1	0			1						1	53.554	53.554	3	0.0052267	15254	20190821_JH_WT_Ubi	56.055	35.049	5794100	0	0	3640200	0	0	0	0	0	2154000			3038	1891	2673	8679;8680	9127;9128	9127			1035	2
LLALLVIPPAITPGTDQLGMFTHK	Unmodified	2545.4342	0.43420241	1891	sp|Q9BWS9|CHID1_HUMAN;sp|Q9BWS9-2|CHID1_HUMAN	yes	no	0	0	0	0	0			1							54.514	54.514	3	0.010102	15645	20190821_JH_WT_Ubi	48.656	33.11	2036600	0	0	2036600	0	0	0	0	0	0			3039	1891	2673	8681	9129	9129				1
LLAVAATAPPDAPNREEVFDER	Unmodified	2380.2023	0.20228822	610	sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN	yes	no	0	0	0	0	1			1			1		1		37.577	37.577	3	0.0017086	11088	20190902_JH_WT_Ubi_2	76.713	52.167	8100600	0	0	4039900	0	0	876530	0	3184200	0			3040	610	2674	8682;8683;8684	9130;9131;9132	9132				2
LLDFGSLSNLQVTQPTVGMNFK	Oxidation (M)	2424.2359	0.23589654	476	sp|P08708|RS17_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	50.927	50.927	3	1.1666E-68	14334	20190821_JH_WT_Ubi	217.67	165.65	35151000	0	3558000	8985200	0	0	3768100	6561400	5768400	6509500			3041	476	2675	8685;8686;8687;8688;8689;8690	9133;9134;9135;9136;9137;9138	9136			280	6
LLDFGSLSNLQVTQPTVGMNFK	Unmodified	2408.241	0.24098191	476	sp|P08708|RS17_HUMAN	yes	yes	0	0	0	0	0		1								53.43	53.43	3	0.020327	14185	20190821_JH_MUT_Ubi	44.415	22.612	3298000	0	3298000	0	0	0	0	0	0	0			3042	476	2675	8691	9139	9139				1
LLDFGSLSNLQVTQPTVGMNFK	Oxidation (M);Deamidation (NQ)	2425.2199	0.21991212	476	sp|P08708|RS17_HUMAN	yes	yes	0	1	0	1	0								1		52.015	52.015	3	0.024433	15520	20190902_JH_WT_Ubi_2	50.226	24.615	856060	0	0	0	0	0	0	0	856060	0			3043	476	2675	8692	9140	9140	841		280	1
LLDSLEPPGEPGPSTNIPENDTVDGR	Unmodified	2718.2984	0.29843303	1720	sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN	yes	no	0	0	0	0	0				1	1			1	1	43.066	43.066	3	0.00010238	10899	20190902_JH_EV_Ubi_2	76.807	46.808	8468200	0	0	0	691010	505460	0	0	2966200	4305500			3044	1720	2676	8693;8694;8695;8696	9141;9142;9143;9144	9141				4
LLEAHEEQNVDSYTESVK	Unmodified	2089.9804	0.98039335	967	sp|P54920|SNAA_HUMAN	yes	yes	0	0	0	0	0								1	1	30.483	30.483	3	0.0022757	8189	20190902_JH_WT_Ubi_3	72.489	31.548	5136000	0	0	0	0	0	0	0	2578800	2557200			3045	967	2677	8697;8698	9145;9146;9147	9147				3
LLEAQACTGGIIHPTTGQK	Unmodified	1994.0255	0.025509829	577	sp|P15924-2|DESP_HUMAN;sp|P15924-3|DESP_HUMAN;sp|P15924|DESP_HUMAN	yes	no	0	0	0	0	0		1								31.336	31.336	3	0.0094172	6353	20190821_JH_MUT_Ubi	56.959	18.15	1527800	0	1527800	0	0	0	0	0	0	0			3046	577	2678	8699	9148	9148				1
LLEAQIATGGIIDPEESHR	Unmodified	2048.0538	0.05383307	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1		1			1	1	39.174	39.174	3	2.2328E-13	9670	20190821_JH_WT_Ubi	138.75	103.9	40820000	0	0	22237000	0	1098000	0	0	8863100	8621300			3047	1332	2679	8700;8701;8702;8703	9149;9150;9151;9152	9150				3
LLEAQIATGGIIDPVHSHR	Unmodified	2026.096	0.095972656	1332;992	sp|P58107|EPIPL_HUMAN;sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	36.414	36.414	4	0.00061823	8625	20190821_JH_WT_Ubi	78.244	26.306	157720000	11512000	15995000	51499000	4804900	3241100	19655000	13333000	19220000	18456000			3048	992;1332	2680	8704;8705;8706;8707;8708;8709;8710;8711;8712	9153;9154;9155;9156;9157;9158;9159;9160;9161	9159				9
LLEAQIATGGVIDPVHSHR	Unmodified	2012.0803	0.080322592	1332;992	sp|P58107|EPIPL_HUMAN;sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	no	no	0	0	0	0	0	1	2	1	1	1	1	1	1		34.731	34.731	3;4	0.00016874	7760	20190821_JH_MUT_Ubi	90.561	46.748	184630000	18263000	21971000	61995000	7268300	7920800	17972000	13338000	35900000	0			3049	992;1332	2681	8713;8714;8715;8716;8717;8718;8719;8720;8721	9162;9163;9164;9165;9166;9167;9168;9169;9170	9165				9
LLEDGEDFNLGDALDSSNSMQTIQK	Oxidation (M)	2755.2494	0.24943393	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	1	0	1		1					1	1	46.424	46.424	3	7.9227E-105	14042	20190902_JH_WT_Ubi_2	238.05	198.52	25523000	1676100	0	8971100	0	0	0	0	8236600	6639400			3050	430	2682	8722;8723;8724;8725	9171;9172;9173;9174	9173			224	4
LLEDGEDFNLGDALDSSNSMQTIQKTTTR	Oxidation (M);GlyGly (K)	3328.5365	0.53650782	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	1	1	1		1					1			42.149	42.149	3	2.473E-25	10993	20190902_JH_MUT_Ubi_3	136.61	102.94	3563500	0	1999900	0	0	0	0	1563600	0	0			3051	430	2683	8726;8727	9175;9176	9176		417	224	2
LLEDGEDFNLGDALDSSNSMQTIQKTTTR	GlyGly (K)	3312.5416	0.5415932	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	1	0	1						1				44.814	44.814	3	0.0022457	13001	20190902_JH_MUT_Ubi_2	51.475	33.828	1465800	0	0	0	0	0	1465800	0	0	0			3052	430	2683	8728	9177	9177		417		1
LLEGDGGPNTGGMGAYCPAPQVSNDLLLK	Oxidation (M)	2959.4056	0.40555741	648	sp|P22102|PUR2_HUMAN;sp|P22102-2|PUR2_HUMAN	yes	no	0	0	0	1	0									1	44.507	44.507	3	0.00066142	13002	20190902_JH_WT_Ubi_3	60.95	18.338	2437700	0	0	0	0	0	0	0	0	2437700			3053	648	2684	8729	9178	9178			399	1
LLEPLVTQVTTLVNTNSK	Unmodified	1969.1096	0.10955703	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN	yes	no	0	0	0	0	0	1									50.585	50.585	3	4.3026E-21	13734	20190821_JH_EV_Ubi	170.11	7.5238	9000000	9000000	0	0	0	0	0	0	0	0			3054	769	2685	8730	9179	9179				1
LLEPPNFFQK	GlyGly (K);2 Deamidation (NQ)	1347.6711	0.67106787	1892	sp|Q9BWT3-2|PAPOG_HUMAN;sp|Q9BWT3|PAPOG_HUMAN	yes	no	0	2	1	0	0	1									30.12	30.12	3	0.021041	6449	20190821_JH_EV_Ubi	74.464	23.028	4989200	4989200	0	0	0	0	0	0	0	0			3055	1892	2686	8731	9180	9180	598;1224	1831		1
LLEQFVCAHTGIIFYAPYTGVCVK	Unmodified	2785.3972	0.39716498	2253	sp|Q9Y676|RT18B_HUMAN	yes	yes	0	0	0	0	0			1							50.601	50.601	3	0.0028695	14214	20190821_JH_WT_Ubi	59.547	32.787	1813100	0	0	1813100	0	0	0	0	0	0			3056	2253	2687	8732	9181	9181				1
LLETKWTLLQEQK	GlyGly (K)	1742.9567	0.95668521	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1			1							37.453	37.453	3	6.2264E-06	8915	20190821_JH_WT_Ubi	137.62	62.141	33268000	0	0	33268000	0	0	0	0	0	0		+	3057	8;19	2688	8733	9182	9182		26		1
LLEVPVMLTEQYPQGLGPTVPELGTEGLRPLAK	Oxidation (M)	3560.9164	0.91640688	1754	sp|Q96AB3-2|ISOC2_HUMAN;sp|Q96AB3|ISOC2_HUMAN	yes	no	0	0	0	1	1									1	51.238	51.238	3	2.2204E-08	14973	20190902_JH_WT_Ubi_3	87.648	77.136	1977100	0	0	0	0	0	0	0	0	1977100			3058	1754	2689	8734	9183	9183			993	1
LLFEGAGSNPGDKTLEDR	GlyGly (K)	2031.9861	0.98614743	1024	sp|P61421|VA0D1_HUMAN	yes	yes	0	0	1	0	1		1								34.218	34.218	3	0.0067317	7429	20190821_JH_MUT_Ubi	65.467	30.167	701190	0	701190	0	0	0	0	0	0	0			3059	1024	2690	8735	9184	9184		1008		1
LLGAEEKEYHAEGGK	GlyGly (K)	1743.8428	0.84277766	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1		1	1	1	1	1	1	1	1	22.349	22.349	3;4	4.5494E-21	4922	20190902_JH_MUT_Ubi_2	178.22	116.8	86470000	0	3537400	9666900	7065000	12936000	7407000	6692400	18950000	20215000			3060	382	2691	8736;8737;8738;8739;8740;8741;8742;8743	9185;9186;9187;9188;9189;9190;9191;9192	9188		339;341		8
LLGELLQDNAKLVPVLSAK	GlyGly (K)	2134.2362	0.23615453	797	sp|P37837|TALDO_HUMAN	yes	yes	0	0	1	0	1		1								47.527	47.527	3	0.033186	12392	20190821_JH_MUT_Ubi	45.357	21.462	705820	0	705820	0	0	0	0	0	0	0			3061	797	2692	8744	9193	9193		776		1
LLGGVTIAQGGVLPNIQAVLLPK	Unmodified	2270.3726	0.37258843	581	sp|P16104|H2AX_HUMAN;sp|Q8IUE6|H2A2B_HUMAN;sp|Q96QV6|H2A1A_HUMAN	yes	no	0	0	0	0	0	1	2	1			1	1		1	54.826	54.826	3	4.981E-37	14613	20190821_JH_MUT_Ubi	176.39	162.31	469730000	2718000	208930000	178330000	0	0	34288000	32097000	0	13377000			3062	581	2693	8745;8746;8747;8748;8749;8750;8751	9194;9195;9196;9197;9198;9199;9200;9201	9196				8
LLGGVTIAQGGVLPNIQAVLLPK	Deamidation (NQ)	2271.3566	0.35660402	581	sp|P16104|H2AX_HUMAN;sp|Q8IUE6|H2A2B_HUMAN;sp|Q96QV6|H2A1A_HUMAN	yes	no	0	1	0	0	0		1								55.623	55.623	2	0.00060952	14838	20190821_JH_MUT_Ubi	83.869	77.974	2499800	0	2499800	0	0	0	0	0	0	0			3063	581	2693	8752	9202	9202	216;863;864			1
LLGGVTIAQGGVLPNIQAVLLPKK	GlyGly (K)	2512.5105	0.5104789	581	sp|P16104|H2AX_HUMAN;sp|Q8IUE6|H2A2B_HUMAN;sp|Q96QV6|H2A1A_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	50.352	50.352	3	5.0112E-57	15100	20190902_JH_WT_Ubi_2	199.75	177.9	1427700000	1511900	527840000	554230000	0	0	80927000	71021000	58622000	133580000			3064	581	2694	8753;8754;8755;8756;8757;8758;8759	9203;9204;9205;9206;9207;9208;9209;9210	9209		572;573		8
LLGGVTIAQGGVLPNIQAVLLPKK	GlyGly (K);Deamidation (NQ)	2513.4945	0.49449448	581	sp|P16104|H2AX_HUMAN;sp|Q8IUE6|H2A2B_HUMAN;sp|Q96QV6|H2A1A_HUMAN	yes	no	0	1	1	0	1		1	1			2	1	2	1	51.627	51.627	3	1.5716E-37	14908	20190902_JH_WT_Ubi_3	180.08	169.24	21744000	0	2923100	3725800	0	0	6128100	1297000	3065300	4604100			3065	581	2694	8760;8761;8762;8763;8764;8765;8766;8767	9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221	9221	216;863;864	572;573		9
LLGPSAAADILQLSSSLPLQSR	Unmodified	2236.2427	0.24269647	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	0	0	0									1	54.536	54.536	3	0.0099558	15685	20190902_JH_WT_Ubi_3	50.916	21.787	976360	0	0	0	0	0	0	0	0	976360			3066	1539	2695	8768	9222	9222				1
LLHLLLDDMPVKPYSDGEGGIEDENR	Oxidation (M);GlyGly (K)	3054.4604	0.46042976	1718	sp|Q92621|NU205_HUMAN	yes	yes	0	0	1	1	1				1		1				39.658	39.658	4	0.00010045	10978	20190902_JH_MUT_Ubi_2	76.889	50.215	3486300	0	0	0	608220	0	2878100	0	0	0			3067	1718	2696	8769;8770	9223;9224	9224		1709	979	2
LLLDPSSPPTKALNGAEPNYHSLPSAR	GlyGly (K);Deamidation (NQ)	2959.5039	0.50394955	1471	sp|Q6IAA8|LTOR1_HUMAN	yes	yes	0	1	1	0	1							1			37.489	37.489	4	0.010845	9523	20190902_JH_MUT_Ubi_3	43.658	25.563	8436000	0	0	0	0	0	0	8436000	0	0			3068	1471	2697	8771	9225	9225	464	1483		1
LLLEEDENEESGSIKR	GlyGly (K)	1973.9542	0.9541786	273	sp|O75165|DJC13_HUMAN	yes	yes	0	0	1	0	1	1		1							30.242	30.242	3	2.2326E-07	6353	20190821_JH_WT_Ubi	127.03	80.743	6426200	1452300	0	4973900	0	0	0	0	0	0			3069	273	2698	8772;8773	9226;9227;9228	9228		261		3
LLLKQNVDVEAEDK	GlyGly (K)	1726.9101	0.91012895	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1	1			30.249	30.249	3	0.000193	7316	20190902_JH_MUT_Ubi_2	113.35	76.334	20081000	1296800	4505000	5717300	0	0	4970500	3591500	0	0			3070	1570	2699	8774;8775;8776;8777;8778	9229;9230;9231;9232;9233	9231		1562		5
LLLPGELAKHAVSEGTK	GlyGly (K)	1876.0418	0.04181182	261;666;995	sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q96A08|H2B1A_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN	no	no	0	0	1	0	1	1		1			1				33.758	33.758	4	0.017101	8593	20190902_JH_MUT_Ubi_2	53.924	31.507	97080000	10716000	0	28628000	0	0	57735000	0	0	0			3071	261;666;995	2700	8779;8780;8781	9234;9235;9236	9235		251;252		3
LLMDWVNAVCAFYNK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1973.9016	0.90155487	1599	sp|Q8IZT6-2|ASPM_HUMAN;sp|Q8IZT6|ASPM_HUMAN	yes	no	0	1	1	1	0							1			21.864	21.864	3	0.034252	4665	20190902_JH_MUT_Ubi_3	50.088	11.751	0	0	0	0	0	0	0	0	0	0			3072	1599	2701	8782	9237	9237	521			1
LLQTAATAAQQGGQANHPTAAVVTEK	Unmodified	2575.3354	0.33542766	812	sp|P40763-3|STAT3_HUMAN;sp|P40763-2|STAT3_HUMAN;sp|P40763|STAT3_HUMAN	yes	no	0	0	0	0	0	1			1	1					28.983	28.983	3	0.0017953	6575	20190902_JH_EV_Ubi_3	59.55	25.204	8403600	3734600	0	0	2359000	2310000	0	0	0	0			3073	812	2702	8783;8784;8785	9238;9239;9240	9240				2
LLQYSDALEHLLTTGQGVVLER	Unmodified	2454.3118	0.31183867	336	sp|O95299|NDUAA_HUMAN;sp|O95299-2|NDUAA_HUMAN	yes	no	0	0	0	0	0			1					1	1	51.711	51.711	3	1.9619E-31	14570	20190821_JH_WT_Ubi	171	123.27	6628300	0	0	4252500	0	0	0	0	1097400	1278400			3074	336	2703	8786;8787;8788	9241;9242;9243	9241				3
LLRTLSSPTEPVK	GlyGly (K)	1553.8777	0.8777066	811	sp|P40306|PSB10_HUMAN	yes	yes	0	0	1	0	1						1				37.478	37.478	3	0.018465	10204	20190902_JH_MUT_Ubi_2	68.44	23.676	5914900	0	0	0	0	0	5914900	0	0	0			3075	811	2704	8789	9244	9244		788		1
LLSEEVFDFSSGQITQVK	Unmodified	2026.0259	0.025886985	166	sp|O14980|XPO1_HUMAN	yes	yes	0	0	0	0	0			1							48.067	48.067	2	0.022924	13245	20190821_JH_WT_Ubi	53.3	12.533	982500	0	0	982500	0	0	0	0	0	0			3076	166	2705	8790	9245	9245				1
LLSHSLLVTLASHLPSDFTPAVHASLDK	Unmodified	2968.6022	0.60220703	2	CON__P01966	yes	yes	0	0	0	0	0		1	1							47.708	47.708	4	3.5094E-07	12472	20190821_JH_MUT_Ubi	90.762	65.242	7073800	0	2953500	4120300	0	0	0	0	0	0		+	3077	2	2706	8791;8792	9246;9247	9246				2
LLSSLLLTMSNNNPELFSPPQK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2573.3047	0.30470438	2146	sp|Q9UJX3-2|APC7_HUMAN;sp|Q9UJX3|APC7_HUMAN	yes	no	0	1	1	1	0		1								42.812	42.812	3	0.01752	10610	20190821_JH_MUT_Ubi	45.347	12.22	1947400	0	1947400	0	0	0	0	0	0	0			3078	2146	2707	8793	9248	9248	683	2012	1127	1
LLSYASYCIEHGDLELAAK	Unmodified	2152.0511	0.051055878	1395	sp|Q16891-2|MIC60_HUMAN;sp|Q16891|MIC60_HUMAN;sp|Q16891-3|MIC60_HUMAN;sp|Q16891-4|MIC60_HUMAN	yes	no	0	0	0	0	0			1							40.353	40.353	3	0.026636	10110	20190821_JH_WT_Ubi	43.454	5.9038	4135500	0	0	4135500	0	0	0	0	0	0			3079	1395	2708	8794	9249	9249				1
LLTLGLSLLHADVVPNATIR	Unmodified	2115.2416	0.24157426	830	sp|P42356-2|PI4KA_HUMAN;sp|P42356|PI4KA_HUMAN;sp|Q8N8J0|PI4P1_HUMAN;sp|A4QPH2-2|PI4P2_HUMAN;sp|A4QPH2-4|PI4P2_HUMAN;sp|A4QPH2|PI4P2_HUMAN	yes	no	0	0	0	0	0			1							49.865	49.865	3	0.01075	13954	20190821_JH_WT_Ubi	53.519	16.042	2952400	0	0	2952400	0	0	0	0	0	0			3080	830	2709	8795	9250	9250				1
LLTPSIHLISGHAHVVSQTAVQVVADVLSK	Unmodified	3118.7503	0.75026825	829	sp|P42345|MTOR_HUMAN	yes	yes	0	0	0	0	0		1	1							49.432	49.432	4;5	0.020687	13580	20190821_JH_WT_Ubi	33.562	16.486	2360700	0	295780	2064900	0	0	0	0	0	0			3081	829	2710	8796;8797	9251;9252	9252				1
LLVENSQQTSGFALALGNIVHGLSVCGHGK	Unmodified	3105.603	0.60295209	1453	sp|Q5VW36|FOCAD_HUMAN	yes	yes	0	0	0	0	0			1							48.904	48.904	4	0.0028921	13564	20190821_JH_WT_Ubi	48.759	22.342	2991100	0	0	2991100	0	0	0	0	0	0			3082	1453	2711	8798	9253	9253				1
LLWGLEGLPLTVSAVQGAHPVLR	Unmodified	2425.3846	0.3845501	1959	sp|Q9H6R4-2|NOL6_HUMAN;sp|Q9H6R4-4|NOL6_HUMAN;sp|Q9H6R4|NOL6_HUMAN	yes	no	0	0	0	0	0		1	1							52.562	52.562	3	0.00090506	14836	20190821_JH_WT_Ubi	70.094	46.294	2905900	0	933620	1972300	0	0	0	0	0	0			3083	1959	2712	8799;8800	9254;9255	9255				2
LLYAVNTHCHADHITGSGLLR	Unmodified	2347.1855	0.18553272	352	sp|O95571|ETHE1_HUMAN	yes	yes	0	0	0	0	0			2					1	1	31.117	31.117	3;4	0.0073791	8757	20190902_JH_WT_Ubi_2	54.253	23.837	94897000	0	0	36037000	0	0	0	0	29609000	29252000			3084	352	2713	8801;8802;8803;8804	9256;9257;9258;9259	9258				4
LMAQEQVRSLR	Oxidation (M);Deamidation (NQ)	1346.6976	0.69763375	1713	sp|Q92576-2|PHF3_HUMAN;sp|Q92576|PHF3_HUMAN	yes	no	0	1	0	1	1			1	1	1	1	1			20.58	20.58	3	0.0079004	5672	20190902_JH_MUT_Ubi_2	93.561	23.123	10324000000	0	0	2801800000	1331800000	1702000000	4453000000	35078000	0	0			3085	1713	2714	8805;8806;8807;8808;8809	9260;9261;9262;9263;9264;9265	9262	1173;1174		973	6
LMAQEQVRSLR	Oxidation (M);2 Deamidation (NQ)	1347.6816	0.68164933	1713	sp|Q92576-2|PHF3_HUMAN;sp|Q92576|PHF3_HUMAN	yes	no	0	2	0	1	1							1			26	26	3	0.02694	5859	20190902_JH_MUT_Ubi_3	69.276	16.786	157320000	0	0	0	0	0	0	157320000	0	0			3086	1713	2714	8810	9266	9266	1173;1174		973	0
LMDKVVRLCQNPK	Deamidation (NQ)	1600.8429	0.84291778	654	sp|Q13191-3|CBLB_HUMAN;sp|Q13191-2|CBLB_HUMAN;sp|P22681|CBL_HUMAN;sp|Q13191|CBLB_HUMAN	yes	no	0	1	0	0	2	1									51.7	51.7	2	0.0081967	13976	20190821_JH_EV_Ubi	83.499	36.544	0	0	0	0	0	0	0	0	0	0			3087	654	2715	8811	9267	9267	878			1
LMEPIYLVEIQCPEQVVGGIYGVLNR	Oxidation (M)	3004.5402	0.5402004	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	1	0			1							55.564	55.564	3	0.021565	15952	20190821_JH_WT_Ubi	40.706	15.102	3336100	0	0	3336100	0	0	0	0	0	0			3088	545	2716	8812	9268	9268			328	1
LMFEYQTLLEEPQYGENMEIYAGK	Oxidation (M);Deamidation (NQ)	2912.3136	0.31361409	2061	sp|Q9NXR7-4|BABA2_HUMAN;sp|Q9NXR7-3|BABA2_HUMAN;sp|Q9NXR7|BABA2_HUMAN;sp|Q9NXR7-1|BABA2_HUMAN	yes	no	0	1	0	1	0						1				34.437	34.437	3	0.0054522	9029	20190902_JH_MUT_Ubi_2	62.19	31.98	1531900	0	0	0	0	0	1531900	0	0	0			3089	2061	2717	8813	9269	9269	655		1103	1
LMKHEKLGEDR	Oxidation (M)	1370.6976	0.69763375	953	sp|P53778-2|MK12_HUMAN;sp|P53778|MK12_HUMAN	yes	no	0	0	0	1	2	1	1				1				25.86	25.86	3	0.0054327	4486	20190821_JH_MUT_Ubi	102.52	53.105	91657000	8458800	22729000	0	0	0	60469000	0	0	0			3090	953	2718	8814;8815;8816	9270;9271;9272;9273	9272			598	4
LMLQLQHDAFQK	2 Deamidation (NQ)	1472.7334	0.73335055	216	sp|O43711|TLX3_HUMAN	yes	yes	0	2	0	0	0				1						36.934	36.934	2	0.035121	9110	20190902_JH_EV_Ubi_2	54.608	6.4198	0	0	0	0	0	0	0	0	0	0			3091	216	2719	8817	9274	9274	777;778			1
LMNESLMLVTALNPHIGYDK	Oxidation (M)	2274.1388	0.13882503	460	sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN	yes	no	0	0	0	1	0			1							45.786	45.786	3	0.029866	12325	20190821_JH_WT_Ubi	50.956	21.616	2946700	0	0	2946700	0	0	0	0	0	0			3092	460	2720	8818	9275	9275			261;262	0
LMNESLMLVTALNPHIGYDK	2 Oxidation (M)	2290.1337	0.13373965	460	sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN	yes	no	0	0	0	2	0									1	42.888	42.888	3	4.9313E-05	12465	20190902_JH_WT_Ubi_3	105.01	52.833	3271100	0	0	0	0	0	0	0	0	3271100			3093	460	2720	8819	9276	9276			261;262	0
LMNIQQQLMKTNLK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1833.9329	0.932855	1197	sp|Q12802-4|AKP13_HUMAN;sp|Q12802|AKP13_HUMAN;sp|Q12802-2|AKP13_HUMAN	yes	no	0	2	1	1	1				1						30.557	30.557	4	0.025567	7133	20190902_JH_EV_Ubi_2	49.081	13.731	1938500	0	0	0	1938500	0	0	0	0	0			3094	1197	2721	8820	9277	9277	394;1010	1263	756	1
LMTQMAQAKEQLDTSNESAEPK	2 Oxidation (M);GlyGly (K)	2595.1792	0.17924587	1772	sp|Q96DX7|TRI44_HUMAN	yes	yes	0	0	1	2	1	1	1		1	1	1	1	2	1	24.991	24.991	3	3.948E-22	5360	20190902_JH_EV_Ubi_3	149.82	84.351	9602400	970900	450220	0	1521600	1485700	914310	1040500	1635800	1583400			3095	1772	2722	8821;8822;8823;8824;8825;8826;8827;8828;8829	9278;9279;9280;9281;9282;9283;9284;9285;9286	9280		1745	995;996	9
LMYQELKVPAEEPANELPMNEIEAWK	2 Oxidation (M);GlyGly (K)	3217.5312	0.53115186	1571	sp|Q8IV08|PLD3_HUMAN	yes	yes	0	0	1	2	1			1	1				1		43.188	43.188	3	4.2565E-05	10873	20190902_JH_EV_Ubi_2	81.974	55.185	11698000	0	0	5495100	1202200	0	0	0	5000800	0			3096	1571	2723	8830;8831;8832	9287;9288;9289;9290	9287		1568	928;929	4
LNCQVIGASVDSHFCHLAWVNTPK	Unmodified	2752.3214	0.32137427	1170	sp|Q06830|PRDX1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	39.742	39.742	4	1.8109E-06	10930	20190902_JH_MUT_Ubi_2	88.983	51.41	376960000	0	35232000	195450000	0	0	34125000	9823900	52712000	49620000			3097	1170	2724	8833;8834;8835;8836;8837;8838	9291;9292;9293;9294;9295;9296	9292				6
LNDGHFMPVLGFGTYAPAEVPK	Oxidation (M)	2375.162	0.16200331	1157	sp|Q04828|AK1C1_HUMAN;sp|P52895|AK1C2_HUMAN;sp|P52895-2|AK1C2_HUMAN	yes	no	0	0	0	1	0			1	1	1	1	1	1	1	43.09	43.09	3	9.3207E-17	11381	20190821_JH_WT_Ubi	146.13	112.47	25306000	0	0	6109400	1788300	1041000	1730600	1392000	5388300	7856800			3098	1157	2725	8839;8840;8841;8842;8843;8844;8845	9297;9298;9299;9300;9301;9302;9303	9301			721	7
LNDPFQPFPGNDSPKEK	GlyGly (K)	2042.9698	0.96976909	831	sp|P42566-2|EPS15_HUMAN;sp|P42566|EPS15_HUMAN	yes	no	0	0	1	0	1	1			1	1					34.777	34.777	3	0.005366	8409	20190821_JH_EV_Ubi	71.143	38.755	4453700	1406700	0	0	1414300	1632700	0	0	0	0			3099	831	2726	8846;8847;8848	9304;9305;9306	9304		798;800		3
LNEAAAGLNQAATELVQASR	Unmodified	2026.0443	0.044331016	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0									1	43.466	43.466	2	1.4547E-13	12675	20190902_JH_WT_Ubi_3	140.3	90.669	922220	0	0	0	0	0	0	0	0	922220			3100	2230	2727	8849	9307	9307				1
LNEQASEEILKVEQK	GlyGly (K)	1870.9636	0.96362108	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN	yes	no	0	0	1	0	1			1	1	1					31.396	31.396	3	7.7177E-11	6790	20190821_JH_WT_Ubi	147.39	57.642	7040900	0	0	4105400	1339600	1596000	0	0	0	0			3101	1131	2728	8850;8851;8852	9308;9309;9310	9310		1127		3
LNETELTDLEGQQESPPKNYLCIEEEK	GlyGly (K)	3319.5402	0.54019622	2163	sp|Q9ULF5-2|S39AA_HUMAN;sp|Q9ULF5|S39AA_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	40.864	40.864	3	7.0317E-44	10581	20190821_JH_EV_Ubi	173.93	134.56	26806000	5384500	3291700	6990000	1580200	1209300	2314600	1221800	2803600	2010200			3102	2163	2729	8853;8854;8855;8856;8857;8858;8859;8860;8861	9311;9312;9313;9314;9315;9316;9317;9318;9319;9320	9311		2020		10
LNFSHGTHEYHAETIK	Unmodified	1882.8962	0.89621022	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN	yes	no	0	0	0	0	0						1		1		22.658	22.658	4	0.0053885	4990	20190902_JH_MUT_Ubi_2	68.033	25.249	8671400	0	0	0	0	0	2739800	0	5931600	0			3103	556	2730	8862;8863	9321;9322	9321				2
LNHPVTHVDQSSDNIIIETLNHEHYECK	Unmodified	3341.5735	0.57350245	638	sp|P21397|AOFA_HUMAN;sp|P21397-2|AOFA_HUMAN	yes	no	0	0	0	0	0			1							34.229	34.229	4	0.0010816	7722	20190821_JH_WT_Ubi	56.131	31.733	8138300	0	0	8138300	0	0	0	0	0	0			3104	638	2731	8864	9323	9323				1
LNHVGDWGTQFGMLIAHLQDK	Unmodified	2379.1794	0.17938471	958	sp|P54136-2|SYRC_HUMAN;sp|P54136|SYRC_HUMAN	yes	no	0	0	0	0	0			1							47.728	47.728	4	0.0061908	13116	20190821_JH_WT_Ubi	56.304	25.359	7832300	0	0	7832300	0	0	0	0	0	0			3105	958	2732	8865	9324	9324				1
LNIIIVAEGAIDTQNKPITSEK	Unmodified	2366.3057	0.30569066	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	1	1									45.198	45.198	3	2.7791E-06	12167	20190821_JH_EV_Ubi	104.88	74.198	5184500	5184500	0	0	0	0	0	0	0	0			3106	1136	2733	8866	9325	9325				1
LNKLEQLEELNLSGNK	GlyGly (K);4 Deamidation (NQ)	1958.9684	0.96843169	1508	sp|Q6ZVD8-2|PHLP2_HUMAN;sp|Q6ZVD8-3|PHLP2_HUMAN;sp|Q6ZVD8|PHLP2_HUMAN	yes	no	0	4	1	0	1	1			1						26.757	26.757	4	0.012347	5792	20190902_JH_EV_Ubi_2	59.607	7.1118	8072900	3634500	0	0	4438300	0	0	0	0	0			3107	1508	2734	8867;8868	9326;9327	9327	479;480;481;1099	1507		2
LNNTPDSDWLQLKPLAGTDDSVVSEDR	GlyGly (K)	3098.4793	0.47925094	2163	sp|Q9ULF5-2|S39AA_HUMAN;sp|Q9ULF5|S39AA_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	45.201	45.201	3	4.331E-13	13679	20190902_JH_WT_Ubi_2	120.31	88.232	44879000	9153000	5355900	10161000	2892700	3620900	4149000	3479400	2650900	3416200			3108	2163	2735	8869;8870;8871;8872;8873;8874;8875;8876;8877	9328;9329;9330;9331;9332;9333;9334;9335;9336;9337	9336		2021		10
LNQVIFPVSYNDKFYK	GlyGly (K)	2088.068	0.068026571	1922	sp|Q9GZZ1|NAA50_HUMAN	yes	yes	0	0	1	0	1						1				40.414	40.414	3	0.0031832	11333	20190902_JH_MUT_Ubi_2	79.004	21.57	2371200	0	0	0	0	0	2371200	0	0	0			3109	1922	2736	8878	9338	9338		1859		1
LNSNTQVVLLSATMPSDVLEVTK	Oxidation (M)	2474.2938	0.29380534	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	0	1	0						1				47.268	47.268	3	0.0002616	13723	20190902_JH_MUT_Ubi_2	77.287	43.926	794020	0	0	0	0	0	794020	0	0	0			3110	1001	2737	8879	9339	9339			627	1
LNSNTQVVLLSATMPSDVLEVTK	Unmodified	2458.2989	0.29889072	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	0	0	0			1							51.196	51.196	3	4.4825E-06	14405	20190821_JH_WT_Ubi	90.464	55.288	2341800	0	0	2341800	0	0	0	0	0	0			3111	1001	2737	8880	9340	9340				1
LNSNTQVVLLSATMPSDVLEVTKK	GlyGly (K)	2700.4368	0.43678119	1001	sp|P60842|IF4A1_HUMAN;sp|P60842-2|IF4A1_HUMAN	yes	no	0	0	1	0	1			1							45.864	45.864	3	0.033387	12371	20190821_JH_WT_Ubi	41.904	22.526	0	0	0	0	0	0	0	0	0	0			3112	1001	2738	8881	9341	9341				1
LNTIPLFVQLLYSSVENIQR	Unmodified	2346.2947	0.29473204	561	sp|P14923|PLAK_HUMAN	yes	yes	0	0	0	0	0								1		58.747	58.747	3	4.1133E-05	16937	20190902_JH_WT_Ubi_2	97.621	75.818	1207700	0	0	0	0	0	0	0	1207700	0			3113	561	2739	8882	9342	9342				1
LNTLASLGYVVVVIDNRGSCHR	Deamidation (NQ)	2443.2642	0.26417697	1497	sp|Q6V1X1-6|DPP8_HUMAN;sp|Q6V1X1-2|DPP8_HUMAN;sp|Q6V1X1-3|DPP8_HUMAN;sp|Q6V1X1|DPP8_HUMAN	yes	no	0	1	0	0	1		1					1		1	38.162	38.162	3	0.028596	9619	20190902_JH_MUT_Ubi_3	57.989	17.027	254430000	0	84278000	0	0	0	0	101570000	0	68587000			3114	1497	2740	8883;8884;8885	9343;9344;9345	9344	474			3
LNVCVSKQPAIMPGQSYGLEDGSCSYK	Oxidation (M);GlyGly (K)	3117.4206	0.42055555	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	1	1	1							1			35.507	35.507	3	0.018907	8945	20190902_JH_MUT_Ubi_3	44.712	14.967	1237400	0	0	0	0	0	0	1237400	0	0			3115	559	2741	8886	9346	9346		550	347	1
LNVIDDDVEEIKK	GlyGly (K)	1642.8414	0.84138068	305	sp|O75886-2|STAM2_HUMAN;sp|O75886|STAM2_HUMAN	yes	no	0	0	1	0	1							1			32.872	32.872	3	0.0018839	8022	20190902_JH_MUT_Ubi_3	104.81	49.547	2114600	0	0	0	0	0	0	2114600	0	0			3116	305	2742	8887	9347	9347		290		1
LPDEKVELFSK	GlyGly (K)	1417.7453	0.74529545	1333	sp|Q15154-4|PCM1_HUMAN;sp|Q15154-2|PCM1_HUMAN;sp|Q15154-5|PCM1_HUMAN;sp|Q15154|PCM1_HUMAN;sp|Q15154-3|PCM1_HUMAN	yes	no	0	0	1	0	1		1								33.553	33.553	3	0.016069	7191	20190821_JH_MUT_Ubi	77.185	51.173	2040700	0	2040700	0	0	0	0	0	0	0			3117	1333	2743	8888	9348	9348		1389		1
LPDIFEAQIAGLR	Unmodified	1441.7929	0.79291434	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0		1		1	1	1	1		1	49.269	49.269	3	1.4262E-06	14166	20190902_JH_MUT_Ubi_2	144.1	44.351	7094500	0	1184100	0	694300	569650	2107100	1471100	0	1068200		+	3118	8;19	2744	8889;8890;8891;8892;8893;8894	9349;9350;9351;9352;9353;9354	9352				6
LPDLKDAEAVQK	GlyGly (K)	1439.762	0.76200815	1344	sp|Q15388|TOM20_HUMAN	yes	yes	0	0	1	0	1							1			29.37	29.37	3	0.0013041	6786	20190902_JH_MUT_Ubi_3	105.03	68.185	0	0	0	0	0	0	0	0	0	0			3119	1344	2745	8895	9355	9355		1397		1
LPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAPAAPPSTPAAPK	Unmodified	4491.2751	0.27506582	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN	yes	no	0	0	0	0	1			1	1	1			1	1	43.322	43.322	4	0.0018809	11475	20190821_JH_WT_Ubi	37.378	23.937	18047000	0	0	7220000	569730	894760	0	0	5321000	4041700			3120	2005	2746	8896;8897;8898;8899;8900	9356;9357;9358;9359;9360;9361;9362;9363	9359				8
LPEEMGLLQGSSGDKR	Oxidation (M);GlyGly (K)	1845.8891	0.88907593	839	sp|P43121|MUC18_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1		28.168	28.168	3	1.427E-07	5771	20190821_JH_WT_Ubi	127.66	81.347	22165000	2909200	1522500	1956700	3483100	3443700	2544900	2994500	3310100	0			3121	839	2747	8901;8902;8903;8904;8905;8906;8907;8908	9364;9365;9366;9367;9368;9369;9370;9371	9370		813	532	8
LPFTPLSYIQGLSHR	Unmodified	1727.9359	0.93589019	2170	sp|Q9UM00-2|TMCO1_HUMAN;sp|Q9UM00|TMCO1_HUMAN	yes	no	0	0	0	0	0	1			1						47.506	47.506	3	0.0011017	12970	20190821_JH_EV_Ubi	93.228	73.104	3030600	2271600	0	0	758910	0	0	0	0	0			3122	2170	2748	8909;8910	9372;9373	9372				2
LPHLKEINPSGR	GlyGly (K)	1473.8052	0.80521036	1915	sp|Q9C0I4|THS7B_HUMAN	yes	yes	0	0	1	0	1	1									30.308	30.308	3	0.022009	6541	20190821_JH_EV_Ubi	68.676	13.323	890130	890130	0	0	0	0	0	0	0	0			3123	1915	2749	8911	9374	9374		1850		1
LPHLPGLEDLGIQATPLELK	Unmodified	2153.2096	0.20960543	1388	sp|Q16795|NDUA9_HUMAN	yes	yes	0	0	0	0	0			1							50.849	50.849	3	3.647E-06	14294	20190821_JH_WT_Ubi	110.34	51.521	2019100	0	0	2019100	0	0	0	0	0	0			3124	1388	2750	8912	9375	9375				1
LPIPESQVITINPELPVEEAAEDYAK	Unmodified	2864.4695	0.4695211	337	sp|O95336|6PGL_HUMAN	yes	yes	0	0	0	0	0			1							53.199	53.199	3	0.007215	15104	20190821_JH_WT_Ubi	48.771	7.9613	3105200	0	0	3105200	0	0	0	0	0	0			3125	337	2751	8913	9376	9376				1
LPIQLQALSLPLVVIVHGNQDNNAK	Unmodified	2693.5228	0.5228345	827	sp|P42226-2|STAT6_HUMAN;sp|P42226-3|STAT6_HUMAN;sp|P42226|STAT6_HUMAN	yes	no	0	0	0	0	0		1	1							53.731	53.731	3	5.7284E-34	15292	20190821_JH_WT_Ubi	160.47	147.79	24859000	0	3374800	21484000	0	0	0	0	0	0			3126	827	2752	8914;8915	9377;9378	9378				2
LPLQLDDAVRPEAEGEEEGR	Unmodified	2222.0815	0.081504383	560	sp|P14868|SYDC_HUMAN;sp|P14868-2|SYDC_HUMAN	yes	no	0	0	0	0	1			1							37.116	37.116	3	0.017035	8822	20190821_JH_WT_Ubi	66.068	43.194	7365600	0	0	7365600	0	0	0	0	0	0			3127	560	2753	8916	9379	9379				1
LPLSGEGPTSQPNSSKQTVLSWQAAIDAARQAK	Unmodified	3435.7746	0.7746451	1134	sp|Q01668-4|CAC1D_HUMAN;sp|Q01668-3|CAC1D_HUMAN;sp|Q01668|CAC1D_HUMAN;sp|Q01668-2|CAC1D_HUMAN	yes	no	0	0	0	0	2			1							27.389	27.389	7	0.035304	5677	20190821_JH_WT_Ubi	14.593	3.92	3166400	0	0	3166400	0	0	0	0	0	0			3128	1134	2754	8917	9380	9380				0
LPLTTNEKADTDMEGSVDTR	Oxidation (M);GlyGly (K)	2322.0645	0.06453369	1601	sp|Q8IZY2-2|ABCA7_HUMAN;sp|Q8IZY2|ABCA7_HUMAN	yes	no	0	0	1	1	1						1	1			27.477	27.477	3	4.8993E-05	6481	20190902_JH_MUT_Ubi_2	100.39	61.565	1578600	0	0	0	0	0	604990	973620	0	0			3129	1601	2755	8918;8919	9381;9382	9381		1595	939	2
LPMLYPEVIQQVSAPVVTSTTQEKPK	Oxidation (M);GlyGly (K)	3012.5842	0.58417371	2008	sp|Q9NR09|BIRC6_HUMAN	yes	yes	0	0	1	1	1	1	1				1	1			44.611	44.611	3	2.8293E-10	11734	20190902_JH_MUT_Ubi_3	107.95	80.745	3430900	452300	945990	0	0	0	663410	1369200	0	0			3130	2008	2756	8920;8921;8922;8923	9383;9384;9385;9386;9387	9387		1920;1921	1083	5
LPNNHIGISFIPR	Unmodified	1476.8201	0.82013215	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0		1			1	1	1			36.494	36.494	3	1.6061E-05	9800	20190902_JH_MUT_Ubi_2	133.88	101.72	16161000	0	4053700	0	0	0	6587400	5519400	0	0			3131	282	2757	8924;8925;8926;8927	9388;9389;9390;9391	9390				4
LPPGEYILVPSTFEPNK	Unmodified	1899.9982	0.99821567	602	sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN	yes	no	0	0	0	0	0			1						1	47.011	47.011	2	7.623E-06	12878	20190821_JH_WT_Ubi	120.47	53.974	6125300	0	0	3573800	0	0	0	0	0	2551500			3132	602	2758	8928;8929	9392;9393	9392				2
LPPGEYILVPSTFEPNKDGDFCIR	GlyGly (K)	2877.4007	0.40073003	602	sp|P17655|CAN2_HUMAN;sp|P17655-2|CAN2_HUMAN	yes	no	0	0	1	0	1						1				46.909	46.909	3	0.0056133	13620	20190902_JH_MUT_Ubi_2	56.766	31.097	1145600	0	0	0	0	0	1145600	0	0	0			3133	602	2759	8930	9394	9394		591		1
LPPILIIHLK	Unmodified	1155.7744	0.77435115	1653	sp|Q8NFA0|UBP32_HUMAN	yes	yes	0	0	0	0	0			1					1	1	42.7	42.7	3	0.0031603	11158	20190821_JH_WT_Ubi	101.25	94.279	2097700	0	0	1540700	0	0	0	0	0	557050			3134	1653	2760	8931;8932;8933	9395;9396;9397	9395				3
LPPLPLTLALGAFLNHR	Unmodified	1842.088	0.087974152	370	sp|O96008|TOM40_HUMAN	yes	yes	0	0	0	0	0			1							55.281	55.281	3	0.00084055	15862	20190821_JH_WT_Ubi	85.976	74.061	6445800	0	0	6445800	0	0	0	0	0	0			3135	370	2761	8934	9398	9398				1
LPPLPVTPGMEGAGVVIAVGEGVSDR	Oxidation (M)	2532.3258	0.32577417	1836	sp|Q99536|VAT1_HUMAN	yes	yes	0	0	0	1	0			1							50.403	50.403	3	2.185E-12	14158	20190821_JH_WT_Ubi	115.11	90.237	2002500	0	0	2002500	0	0	0	0	0	0			3136	1836	2762	8935	9399	9399			1016	1
LPPLPVTPGMEGAGVVIAVGEGVSDR	Unmodified	2516.3309	0.33085955	1836	sp|Q99536|VAT1_HUMAN	yes	yes	0	0	0	0	0			1							53.334	53.334	3	1.1054E-07	15171	20190821_JH_WT_Ubi	98.135	55.502	3412500	0	0	3412500	0	0	0	0	0	0			3137	1836	2762	8936	9400	9400				1
LPPNTNDEVDEDPTGNKALWDR	GlyGly (K)	2609.1994	0.19938769	1346	sp|Q15393-3|SF3B3_HUMAN;sp|Q15393|SF3B3_HUMAN	yes	no	0	0	1	0	1		1							1	35.409	35.409	3	0.00026943	7935	20190821_JH_MUT_Ubi	80.277	58.159	591930	0	591930	0	0	0	0	0	0	0			3138	1346	2763	8937;8938	9401;9402;9403	9402		1399		3
LPPVLAIQLKR	GlyGly (K)	1360.8555	0.85545502	1738	sp|Q93008-1|USP9X_HUMAN;sp|Q93008|USP9X_HUMAN	yes	no	0	0	1	0	1			1					1		37.878	37.878	3	0.0020313	9087	20190821_JH_WT_Ubi	109.66	76.575	2959100	0	0	1952500	0	0	0	0	1006600	0			3139	1738	2764	8939;8940	9404;9405	9404		1730		2
LPPVLLVHLK	Unmodified	1127.7431	0.74305102	813	sp|P40818-2|UBP8_HUMAN;sp|P40818|UBP8_HUMAN	yes	no	0	0	0	0	0			1					1	1	39.104	39.104	3	0.001645	9621	20190821_JH_WT_Ubi	109.48	18.877	5130800	0	0	2335400	0	0	0	0	1027100	1768300			3140	813	2765	8941;8942;8943	9406;9407;9408	9406				3
LPQFGISTPGSDLHVNAK	Unmodified	1879.9792	0.97921156	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0	1	1								37.961	37.961	3	6.8534E-12	8762	20190821_JH_MUT_Ubi	145.79	114.89	8482800	3877000	4605800	0	0	0	0	0	0	0			3141	1190	2766	8944;8945	9409;9410	9410				2
LPTFGAPEQLVDLKQAGLEAAAK	GlyGly (K)	2480.3275	0.32748873	1290	sp|Q14258|TRI25_HUMAN	yes	yes	0	0	1	0	1		1				1	1			46.478	46.478	3	8.7616E-09	12299	20190902_JH_MUT_Ubi_3	114.87	76.29	7647600	0	3820000	0	0	0	1923800	1903800	0	0			3142	1290	2767	8946;8947;8948	9411;9412;9413	9413		1352		3
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	Oxidation (M);Deamidation (NQ)	3142.4109	0.41091338	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	1	0	1	1			1					1		36.338	36.338	3	1.2039E-05	8443	20190821_JH_WT_Ubi	75.156	52.885	9028800	0	0	2789400	0	0	0	0	6239500	0			3143	1128	2768	8949;8950	9414;9415	9414	365		701	2
LQAMSGEEVDSVEKGELADR	Oxidation (M);GlyGly (K)	2292.054	0.053969004	274	sp|O75185|AT2C2_HUMAN;sp|O75185-3|AT2C2_HUMAN;sp|O75185-2|AT2C2_HUMAN	yes	no	0	0	1	1	1	1	1								29.924	29.924	3	5.9519E-07	6392	20190821_JH_EV_Ubi	120.56	79.304	2863200	2252800	610440	0	0	0	0	0	0	0			3144	274	2769	8951;8952	9416;9417;9418	9417		264	120	3
LQAQQDAVNIVCHSKTR	GlyGly (K)	2081.0436	0.043619509	971	sp|P55036|PSMD4_HUMAN;sp|P55036-2|PSMD4_HUMAN	yes	no	0	0	1	0	1		1				1	1	1		26.55	26.55	4	0.0003962	6111	20190902_JH_MUT_Ubi_2	95.854	62.936	19664000	0	3203400	0	0	0	7398700	3557800	5504100	0			3145	971	2770	8953;8954;8955;8956	9419;9420;9421;9422	9420		954		4
LQDAFSSIGQSCHLDLPQIAVVGGQSAGK	Unmodified	2982.4869	0.48691928	908	sp|P50570-3|DYN2_HUMAN;sp|P50570-2|DYN2_HUMAN;sp|P50570-5|DYN2_HUMAN;sp|P50570-4|DYN2_HUMAN;sp|P50570|DYN2_HUMAN	yes	no	0	0	0	0	0	1	1	1						1	46.298	46.298	3	1.4848E-07	13470	20190902_JH_WT_Ubi_3	95.319	64.57	11514000	1938300	1616400	5466900	0	0	0	0	0	2492100			3146	908	2771	8957;8958;8959;8960	9423;9424;9425;9426	9426				4
LQDLSSCITQGKDAAVSK	GlyGly (K)	2034.0052	0.0051683175	716	sp|P29590-11|PML_HUMAN;sp|P29590|PML_HUMAN;sp|P29590-14|PML_HUMAN;sp|P29590-10|PML_HUMAN;sp|P29590-4|PML_HUMAN;sp|P29590-12|PML_HUMAN;sp|P29590-2|PML_HUMAN;sp|P29590-5|PML_HUMAN;sp|P29590-9|PML_HUMAN;sp|P29590-13|PML_HUMAN;sp|P29590-3|PML_HUMAN;sp|P29590-8|PML_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	31.517	31.517	3	2.3698E-20	7401	20190902_JH_MUT_Ubi_3	167.35	113.11	251640000	19423000	14616000	50329000	13455000	9822700	12736000	15836000	53555000	61869000			3147	716	2772	8961;8962;8963;8964;8965;8966;8967;8968;8969	9427;9428;9429;9430;9431;9432;9433;9434;9435;9436	9433		695		10
LQDLSSCITQGKDAAVSK	GlyGly (K);Deamidation (NQ)	2034.9892	0.9891839	716	sp|P29590-11|PML_HUMAN;sp|P29590|PML_HUMAN;sp|P29590-14|PML_HUMAN;sp|P29590-10|PML_HUMAN;sp|P29590-4|PML_HUMAN;sp|P29590-12|PML_HUMAN;sp|P29590-2|PML_HUMAN;sp|P29590-5|PML_HUMAN;sp|P29590-9|PML_HUMAN;sp|P29590-13|PML_HUMAN;sp|P29590-3|PML_HUMAN;sp|P29590-8|PML_HUMAN	yes	no	0	1	1	0	1					1			1	1	32.307	32.307	3	0.0018136	9275	20190902_JH_WT_Ubi_2	94.01	42.315	7840200	0	0	0	0	740520	0	0	3140400	3959300			3148	716	2772	8970;8971;8972	9437;9438;9439	9438	884	695		3
LQDVFNTVGADIIQLPQIVVVGTQSSGK	Unmodified	2925.5811	0.58113724	127	sp|O00429-4|DNM1L_HUMAN;sp|O00429-5|DNM1L_HUMAN;sp|O00429-3|DNM1L_HUMAN;sp|O00429-2|DNM1L_HUMAN;sp|O00429|DNM1L_HUMAN;sp|O00429-8|DNM1L_HUMAN;sp|O00429-6|DNM1L_HUMAN	yes	no	0	0	0	0	0		1	1							55.951	55.951	3	0.00083342	16032	20190821_JH_WT_Ubi	59.673	36.377	2882200	0	784070	2098100	0	0	0	0	0	0			3149	127	2773	8973;8974	9440;9441;9442	9442				3
LQEEEEESNTSKVPTAVSEDHL	GlyGly (K)	2584.1776	0.17764919	2184	sp|Q9UPI3-2|FLVC2_HUMAN;sp|Q9UPI3|FLVC2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	31.734	31.734	3	9.7732E-09	9069	20190902_JH_WT_Ubi_2	118.19	85.046	79511000	9211000	4688000	12106000	10612000	6639300	7862300	8176200	10027000	10189000			3150	2184	2774	8975;8976;8977;8978;8979;8980;8981;8982;8983	9443;9444;9445;9446;9447;9448;9449;9450;9451;9452	9451		2045		10
LQEEMLQREEAENTLQSFR	Oxidation (M)	2366.1172	0.11723796	474	sp|P08670|VIME_HUMAN	yes	yes	0	0	0	1	1		1								35.052	35.052	3	0.0064821	7764	20190821_JH_MUT_Ubi	73.138	42.026	826890	0	826890	0	0	0	0	0	0	0			3151	474	2775	8984	9453	9453			278	1
LQEGYDHSYYFIATFITDHIR	Unmodified	2588.2336	0.23358835	514	sp|P10768|ESTD_HUMAN	yes	yes	0	0	0	0	0								1		51.078	51.078	4	0.0076604	15269	20190902_JH_WT_Ubi_2	53.768	25.922	5422600	0	0	0	0	0	0	0	5422600	0			3152	514	2776	8985	9454	9454				1
LQEKLSPPYSSPQEFAQDVGR	GlyGly (K)	2489.2187	0.21866657	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	1	0	1				1	1	1				37.562	37.562	3	1.105E-11	10176	20190902_JH_MUT_Ubi_2	132.67	93.146	2662500	0	0	0	1005200	379620	1277700	0	0	0			3153	1227	2777	8986;8987;8988	9455;9456;9457;9458	9457		1295		4
LQETEQALQEQEVVLK	2 Deamidation (NQ)	1885.9521	0.95205334	1402	sp|Q2TAC2-2|CCD57_HUMAN;sp|Q2TAC2|CCD57_HUMAN	yes	no	0	2	0	0	0		1								33.814	33.814	3	0.02472	7296	20190821_JH_MUT_Ubi	57.328	10.363	0	0	0	0	0	0	0	0	0	0			3154	1402	2778	8989	9459	9459	1059;1060			1
LQGTHYSVQSDIWSMGLSLVEMAVGR	2 Oxidation (M)	2895.3895	0.38951342	1141	sp|Q02750-2|MP2K1_HUMAN;sp|Q02750|MP2K1_HUMAN	yes	no	0	0	0	2	0								1		53.859	53.859	3	0.0029841	16055	20190902_JH_WT_Ubi_2	56.303	24.703	2170900	0	0	0	0	0	0	0	2170900	0			3155	1141	2779	8990	9460	9460			711;712	1
LQGVGALGQAASDNSGPEDAKR	GlyGly (K)	2254.0938	0.093800404	1102	sp|Q5JPE7-3|NOMO2_HUMAN;sp|Q5JPE7-2|NOMO2_HUMAN;sp|P69849|NOMO3_HUMAN;sp|Q5JPE7|NOMO2_HUMAN	yes	no	0	0	1	0	1	1								1	29.299	29.299	3	0.034369	7752	20190902_JH_WT_Ubi_3	42.529	8.8318	779560	779560	0	0	0	0	0	0	0	0			3156	1102	2780	8991;8992	9461;9462	9462				2
LQKVTQHHK	2 GlyGly (K);2 Deamidation (NQ)	1347.6895	0.6895119	100	sp|B1AJZ9-4|FHAD1_HUMAN;sp|B1AJZ9|FHAD1_HUMAN;sp|B1AJZ9-3|FHAD1_HUMAN	yes	no	0	2	2	0	1				1						31.42	31.42	3	0.034253	7375	20190902_JH_EV_Ubi_2	50.805	12.671	0	0	0	0	0	0	0	0	0	0			3157	100	2781	8993	9463	9463	752;753			1
LQLKAIEPQKEEADENYNSVNTR	GlyGly (K)	2802.3784	0.37841469	1198	sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN	yes	no	0	0	1	0	2	1									30.334	30.334	4	0.011301	6560	20190821_JH_EV_Ubi	49.559	26.05	738100	738100	0	0	0	0	0	0	0	0			3158	1198	2782	8994	9464	9464		1264;1265		1
LQLQEQLQAETELCAEAEELR	Unmodified	2500.2115	0.21153228	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0	1		1							47.124	47.124	3	1.2842E-05	12869	20190821_JH_WT_Ubi	87.652	49.634	4826700	1055700	0	3771000	0	0	0	0	0	0			3159	776	2783	8995;8996	9465;9466	9466				2
LQMEQQQQLQQR	Oxidation (M);3 Deamidation (NQ)	1575.7199	0.71988533	2023	sp|Q9NS69|TOM22_HUMAN	yes	yes	0	3	0	1	0		1								18.535	18.535	3	0.028919	2791	20190821_JH_MUT_Ubi	53.237	11.207	17439000	0	17439000	0	0	0	0	0	0	0			3160	2023	2784	8997	9467	9467	1271;1272;1273;1274		1088	1
LQMYFQSPK	Oxidation (M);2 Deamidation (NQ)	1158.5267	0.52671182	1412	sp|Q460N5-4|PAR14_HUMAN;sp|Q460N5-1|PAR14_HUMAN;sp|Q460N5|PAR14_HUMAN	yes	no	0	2	0	1	0							2			29.064	29.064	3	0.034147	6696	20190902_JH_MUT_Ubi_3	49.097	8.2148	21048000	0	0	0	0	0	0	21048000	0	0			3161	1412	2785	8998;8999	9468;9469	9469	1062;1063			0
LQNKNHSLSLEAPPREWSK	GlyGly (K)	2347.2033	0.20329127	54		yes	yes	0	0	1	0	2					1					36.082	36.082	4	0.019793	8904	20190902_JH_EV_Ubi_3	48.623	8.7593	1784800	0	0	0	0	1784800	0	0	0	0	+		3162	54	2786	9000	9470	9470		55		1
LQNRYQMQETK	Oxidation (M);3 Deamidation (NQ)	1456.6504	0.65040879	50		yes	no	0	3	0	1	1								1		16.682	16.682	3	0.027679	4053	20190902_JH_WT_Ubi_2	56.548	7.0818	1897400	0	0	0	0	0	0	0	1897400	0	+		3163	50	2787	9001	9471	9471	18;730;731		33	1
LQPGGSLNANTSNTIASTSATTPVK	Unmodified	2429.2398	0.23979594	328	sp|O95171-3|SCEL_HUMAN;sp|O95171-2|SCEL_HUMAN;sp|O95171|SCEL_HUMAN	yes	no	0	0	0	0	0	1	1		1	1		1		1	33.805	33.805	3	0.00014266	8044	20190821_JH_EV_Ubi	75.956	34.474	11402000	2520000	596380	0	2648600	1956300	0	1275800	0	2405300			3164	328	2788	9002;9003;9004;9005;9006;9007	9472;9473;9474;9475;9476;9477	9472				6
LQPHLLEMLIQLPANSVTK	Oxidation (M)	2160.1977	0.19766054	1749	sp|Q969N2-6|PIGT_HUMAN;sp|Q969N2-5|PIGT_HUMAN;sp|Q969N2|PIGT_HUMAN;sp|Q969N2-3|PIGT_HUMAN;sp|Q969N2-2|PIGT_HUMAN;sp|Q969N2-4|PIGT_HUMAN	yes	no	0	0	0	1	0					1					46.7	46.7	3	0.010739	11765	20190902_JH_EV_Ubi_3	57.788	36.783	610470	0	0	0	0	610470	0	0	0	0			3165	1749	2789	9008	9478;9479	9479			992	2
LQQELDDLLVDLDHQR	Unmodified	1948.9854	0.98541915	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0			1					1	1	46.433	46.433	3	2.7814E-05	12557	20190821_JH_WT_Ubi	113.47	56.992	20046000	0	0	9932400	0	0	0	0	5463100	4650800			3166	776	2790	9009;9010;9011	9480;9481;9482	9480				3
LQQERRFLMR	Oxidation (M);2 Deamidation (NQ)	1393.7136	0.71361816	500	sp|P0C1Z6-2|TFPT_HUMAN;sp|P0C1Z6|TFPT_HUMAN	yes	no	0	2	0	1	2							1			28.285	28.285	3	0.033188	6450	20190902_JH_MUT_Ubi_3	51.528	14.546	11385000	0	0	0	0	0	0	11385000	0	0			3167	500	2791	9012	9483	9483	847;848			0
LQQGVSATVAHLLDLAGSAGATGSWR	Unmodified	2565.3299	0.32994835	990	sp|P56945-4|BCAR1_HUMAN;sp|P56945-5|BCAR1_HUMAN;sp|P56945-8|BCAR1_HUMAN;sp|P56945|BCAR1_HUMAN;sp|P56945-7|BCAR1_HUMAN;sp|P56945-3|BCAR1_HUMAN;sp|P56945-2|BCAR1_HUMAN;sp|P56945-6|BCAR1_HUMAN	yes	no	0	0	0	0	0	1	1	1							51.186	51.186	3	9.964E-07	13582	20190821_JH_MUT_Ubi	89.392	72.462	5450500	797650	2724000	1928900	0	0	0	0	0	0			3168	990	2792	9013;9014;9015	9484;9485;9486	9485				3
LQQLFNHTMFILEQEEYQR	Oxidation (M)	2482.1951	0.19509435	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN;sp|P35749-4|MYH11_HUMAN;sp|P35749-3|MYH11_HUMAN;sp|P35749|MYH11_HUMAN;sp|P35749-2|MYH11_HUMAN;sp|P35580|MYH10_HUMAN;sp|P35580-5|MYH10_HUMAN;sp|P35580-2|MYH10_HUMAN;sp|P35580-3|MYH10_HUMAN;sp|P35580-4|MYH10_HUMAN	yes	no	0	0	0	1	0			1					1	1	41.163	41.163	3	4.1702E-18	10464	20190821_JH_WT_Ubi	153.36	103.29	11968000	0	0	5307300	0	0	0	0	3532700	3128300			3169	776	2793	9016;9017;9018	9487;9488;9489	9487			491	3
LQQLLPLKAAPQPSVSCVYK	GlyGly (K)	2353.2828	0.28278715	800	sp|P38435|VKGC_HUMAN;sp|P38435-2|VKGC_HUMAN	yes	no	0	0	1	0	1			1							39.308	39.308	3	0.0088805	9656	20190821_JH_WT_Ubi	59.512	31.31	5412000	0	0	5412000	0	0	0	0	0	0			3170	800	2794	9019	9490	9490		780		1
LQREEEEAFASSQSSQGAQSLTFSKFEEK	GlyGly (K)	3391.5804	0.58042155	2144	sp|Q9UJ41-2|RABX5_HUMAN;sp|Q9UJ41-4|RABX5_HUMAN;sp|Q9UJ41-3|RABX5_HUMAN;sp|Q9UJ41|RABX5_HUMAN	yes	no	0	0	1	0	2		1	1			1	1	1		35.162	35.162	4	1.5351E-16	8073	20190821_JH_WT_Ubi	120.33	103.17	54765000	0	9323300	14085000	0	0	10641000	10278000	10437000	0			3171	2144	2795	9020;9021;9022;9023;9024	9491;9492;9493;9494;9495	9494		2011		5
LQSQKGVQGIIVVNTEGIPIK	GlyGly (K)	2334.3271	0.3270948	2000	sp|Q9NP97|DLRB1_HUMAN	yes	yes	0	0	1	0	1			1							39.786	39.786	3	0.00044419	9856	20190821_JH_WT_Ubi	77.668	53.464	4338700	0	0	4338700	0	0	0	0	0	0			3172	2000	2796	9025	9496	9496		1915		1
LQVELDNVTGLLSQSDSK	GlyGly (K);2 Deamidation (NQ)	2061.0114	0.011359132	776	sp|P35579|MYH9_HUMAN	yes	yes	0	2	1	0	0								1		45.872	45.872	3	0.022417	13819	20190902_JH_WT_Ubi_2	51.495	7.9386	2239700	0	0	0	0	0	0	0	2239700	0			3173	776	2797	9026	9497	9497	276;904	763		1
LQVEPAVDTSGVQCYGPGIEGQGVFR	Unmodified	2762.3334	0.33337875	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1		1		1				1	44.991	44.991	3	4.0273E-16	12103	20190821_JH_WT_Ubi	132.39	103.94	17988000	1477100	0	10296000	0	908650	0	0	0	5305600			3174	637	2798	9027;9028;9029;9030	9498;9499;9500;9501	9500				4
LRPLSYPQTDVFLVCFSVVSPSSFENVK	Unmodified	3214.6373	0.63727191	1005	sp|P60953|CDC42_HUMAN;sp|P60953-1|CDC42_HUMAN	yes	no	0	0	0	0	1			1							52.967	52.967	3	0.00025102	15002	20190821_JH_WT_Ubi	77.939	49.274	6475100	0	0	6475100	0	0	0	0	0	0			3175	1005	2799	9031	9502	9502				1
LRPLSYPQTVGETYGKDITSR	GlyGly (K)	2494.2816	0.28160117	1075	sp|P63000-2|RAC1_HUMAN	yes	yes	0	0	1	0	2		1				1	1			33.012	33.012	4	0.00041465	8415	20190902_JH_MUT_Ubi_2	75.548	60.027	9747500	0	3369100	0	0	0	3402400	2976000	0	0			3176	1075	2800	9032;9033;9034	9503;9504;9505	9504		1061		3
LSALGNVTTCNDYVALVHPDLDR	Unmodified	2542.2486	0.24858649	988	sp|P56537|IF6_HUMAN	yes	yes	0	0	0	0	0	1			1						43.769	43.769	3	0.028209	11724	20190821_JH_EV_Ubi	38.205	18.53	2881100	2154400	0	0	726730	0	0	0	0	0			3177	988	2801	9035;9036	9506;9507	9506				2
LSDNPAWEGDK	Deamidation (NQ)	1231.5357	0.5356966	1903	sp|Q9BY42|RTF2_HUMAN	yes	yes	0	1	0	0	0					1					29.567	29.567	2	0.013435	6767	20190902_JH_EV_Ubi_3	85.862	32.087	259750	0	0	0	0	259750	0	0	0	0			3178	1903	2802	9037	9508	9508	605			0
LSDQCTGLQGFLVFHSFGGGTGSGFTSLLMER	Oxidation (M)	3421.6071	0.60711077	1098	sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN	yes	no	0	0	0	1	0			1					1		53.394	53.394	3	4.1783E-06	15925	20190902_JH_WT_Ubi_2	77.917	60.27	9712100	0	0	2719000	0	0	0	0	6993100	0			3179	1098	2803	9038;9039	9509;9510	9510			685	2
LSEYMKALINKK	Oxidation (M)	1452.801	0.80103619	1521	sp|Q7L099|RUFY3_HUMAN;sp|Q7L099-2|RUFY3_HUMAN;sp|Q7L099-4|RUFY3_HUMAN;sp|Q7L099-3|RUFY3_HUMAN	yes	no	0	0	0	1	2				1						29.149	29.149	3	0.027973	6679	20190902_JH_EV_Ubi_2	72.531	7.2994	770900	0	0	0	770900	0	0	0	0	0			3180	1521	2804	9040	9511	9511			913	1
LSGEQVDGKGQAGSVSESAR	GlyGly (K)	2074.9879	0.98793835	242	sp|O60353-2|FZD6_HUMAN;sp|O60353|FZD6_HUMAN	yes	no	0	0	1	0	1	1									22.917	22.917	3	0.00031681	4052	20190821_JH_EV_Ubi	84.66	52.96	548190	548190	0	0	0	0	0	0	0	0			3181	242	2805	9041	9512	9512		213		1
LSGTVGVAAVTAGPGLTNTVTAVK	Unmodified	2183.2161	0.21614737	70	sp|A1L0T0|ILVBL_HUMAN	yes	yes	0	0	0	0	0	1									42.323	42.323	3	0.0034941	11089	20190821_JH_EV_Ubi	57.986	33.307	2387900	2387900	0	0	0	0	0	0	0	0			3182	70	2806	9042	9513	9513				1
LSKMAIDNAVK	GlyGly (K)	1302.6966	0.69657112	31		yes	yes	0	0	1	0	1							1			24.841	24.841	3	0.020535	5448	20190902_JH_MUT_Ubi_3	72.321	12.066	8252400	0	0	0	0	0	0	8252400	0	0	+		3183	31	2807	9043	9514	9514		47		1
LSLEGDHSTPPSAYGSVKAYTNFDAER	GlyGly (K)	3025.4054	0.40535772	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1		1								36.896	36.896	4	0.0013515	8456	20190821_JH_MUT_Ubi	59.912	25.453	7599100	0	7599100	0	0	0	0	0	0	0			3184	446	2808	9044	9515	9515		442		1
LSNGADILFEPKLKFM	2 GlyGly (K);Deamidation (NQ)	2051.0398	0.03976291	1802	sp|Q96N16-7|JKIP1_HUMAN;sp|Q96N16|JKIP1_HUMAN;sp|Q96N16-6|JKIP1_HUMAN	yes	no	0	1	2	0	2	1									21.213	21.213	5	0.026627	3656	20190821_JH_EV_Ubi	48.527	10.614	690300	690300	0	0	0	0	0	0	0	0			3185	1802	2809	9045	9516	9516	577	1763;1764		0
LSNTGSGLQWLTGALHLCSPLTSQDIQHLK	Unmodified	3274.6768	0.67684531	835	sp|P42785|PCP_HUMAN;sp|P42785-2|PCP_HUMAN	yes	no	0	0	0	0	0		1	1					1		49.703	49.703	4	0.0019823	13773	20190821_JH_WT_Ubi	50.029	23.614	61253000	0	1408700	54318000	0	0	0	0	5525900	0			3186	835	2810	9046;9047;9048	9517;9518;9519;9520	9518				4
LSPTEPKNYGSYSTQASAAAATAELLK	GlyGly (K)	2882.4298	0.42978155	157	sp|O14828-2|SCAM3_HUMAN;sp|O14828|SCAM3_HUMAN	yes	no	0	0	1	0	1	1			1	1				1	39.13	39.13	3	7.498E-07	9924	20190821_JH_EV_Ubi	92.147	69.917	19276000	5693500	0	0	2442300	2146800	0	0	0	8993000			3187	157	2811	9049;9050;9051;9052	9521;9522;9523;9524	9521		128;129		4
LSQKAPSLEDGSDAFMSPQDVR	Oxidation (M);GlyGly (K)	2507.1598	0.15983106	286	sp|O75387|LAT3_HUMAN;sp|O75387-2|LAT3_HUMAN	yes	no	0	0	1	1	1	1		1	1		1		1	1	33.25	33.25	3	6.1057E-30	9594	20190902_JH_WT_Ubi_2	169.84	116.38	26096000	2505900	0	4215500	2224800	0	2456400	0	7763200	6929900			3188	286	2812	9053;9054;9055;9056;9057;9058	9525;9526;9527;9528;9529;9530	9529		278	129	6
LSQKNEGLNGR	GlyGly (K)	1328.6797	0.6796755	56		yes	yes	0	0	1	0	1					1					25.092	25.092	3	0.024626	5453	20190902_JH_EV_Ubi_3	68.786	13.722	12582000	0	0	0	0	12582000	0	0	0	0	+		3189	56	2813	9059	9531	9531		57		1
LSRLAYHPLKMQSCYEK	GlyGly (K)	2237.1085	0.10852795	1830	sp|Q96TA1-2|NIBL1_HUMAN;sp|Q96TA1|NIBL1_HUMAN	yes	no	0	0	1	0	2		1								31.648	31.648	4	0.017646	6445	20190821_JH_MUT_Ubi	53.3	20.75	25676000	0	25676000	0	0	0	0	0	0	0			3190	1830	2814	9060	9532	9532		1790		1
LSTECAFMTIEK	GlyGly (K)	1542.7058	0.70581517	1572	sp|Q8IV33|K0825_HUMAN	yes	yes	0	0	1	0	0								1		18.761	18.761	3	0.025804	4655	20190902_JH_WT_Ubi_2	66.663	27.859	903400	0	0	0	0	0	0	0	903400	0			3191	1572	2815	9061	9533	9533		1569		0
LSTEFNPEPWIQVDMQK	Oxidation (M);3 Deamidation (NQ)	2079.9347	0.93468872	18	CON__Q28107	yes	yes	0	3	0	1	0								1		11.381	11.381	3	0.02202	2646	20190902_JH_WT_Ubi_2	43.408	8.1046	4202700	0	0	0	0	0	0	0	4202700	0		+	3192	18	2816	9062	9534	9534	13;725;726		23	1
LSVEFEANDLQGGSVGSVNLNTSSKDNDEK	GlyGly (K)	3266.5175	0.51748694	1280	sp|Q14156-3|EFR3A_HUMAN;sp|Q14156-2|EFR3A_HUMAN;sp|Q14156|EFR3A_HUMAN	yes	no	0	0	1	0	1	1		1							39.592	39.592	3	1.3511E-25	9749	20190821_JH_WT_Ubi	136.74	107.24	4424700	1218800	0	3205800	0	0	0	0	0	0			3193	1280	2817	9063;9064	9535;9536	9536		1343		2
LSVGDIENKHPVSEVGPATVPLQAVVEER	GlyGly (K)	3182.6572	0.65715573	1693	sp|Q8WUM9|S20A1_HUMAN	yes	yes	0	0	1	0	1					1					41.798	41.798	4	0.008729	10539	20190902_JH_EV_Ubi_3	44.811	32.378	3765600	0	0	0	0	3765600	0	0	0	0			3194	1693	2818	9065	9537	9537		1686		1
LSVSKPTVTTGSGYGFTVPQGMR	Oxidation (M);Deamidation (NQ)	2386.1839	0.18386096	2203	sp|Q9Y279-2|VSIG4_HUMAN;sp|Q9Y279|VSIG4_HUMAN	yes	no	0	1	0	1	1					1					32.776	32.776	3	0.016629	7852	20190902_JH_EV_Ubi_3	49.326	13.353	783250	0	0	0	0	783250	0	0	0	0			3195	2203	2819	9066	9538	9538	1326		1143	1
LTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVK	Unmodified	3277.7307	0.73065502	308	sp|O75976|CBPD_HUMAN	yes	yes	0	0	0	0	1	1		1						1	46.645	46.645	3	1.7627E-06	12704	20190821_JH_WT_Ubi	78.343	47.801	13435000	1097600	0	9177400	0	0	0	0	0	3160200			3196	308	2820	9067;9068;9069	9539;9540;9541	9540				3
LTCAVGDGGNDVSMIQESDCGVGVEGKEGK	Oxidation (M);GlyGly (K)	3197.3911	0.39110592	269	sp|O75110-2|ATP9A_HUMAN;sp|O75110|ATP9A_HUMAN	yes	no	0	0	1	1	1			1					1	2	32.136	32.136	3	3.7169E-50	9177	20190902_JH_WT_Ubi_2	181.65	152.45	6449500	0	0	1675100	0	0	0	0	1484000	3290400			3197	269	2821	9070;9071;9072;9073	9542;9543;9544;9545;9546	9544		260	118	5
LTEELQTVENGYHDNPTLEVMETSSEMQEKK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3755.6666	0.6665953	135	sp|O00592-2|PODXL_HUMAN;sp|O00592|PODXL_HUMAN	yes	no	0	1	1	2	1	2	1		1						34.568	34.568	4	0.00072021	8523	20190821_JH_EV_Ubi	74.525	53.791	8128300	5108300	1655700	0	1364300	0	0	0	0	0			3198	135	2822	9074;9075;9076;9077	9547;9548;9549;9550	9548	50;51	117;118	61;62	4
LTEELQTVENGYHDNPTLEVMETSSEMQEKK	Oxidation (M);GlyGly (K);Deamidation (NQ)	3739.6717	0.67168068	135	sp|O00592-2|PODXL_HUMAN;sp|O00592|PODXL_HUMAN	yes	no	0	1	1	1	1		1								36.612	36.612	4	0.023458	8342	20190821_JH_MUT_Ubi	53.679	25.457	1345700	0	1345700	0	0	0	0	0	0	0			3199	135	2822	9078	9551	9551	50;51	117;118	61;62	1
LTELGTVDPKNK	GlyGly (K)	1427.762	0.76200815	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	25.175	25.175	3	0.0007158	5419	20190902_JH_MUT_Ubi_3	117.14	57.71	25940000	0	1655000	6425800	0	0	3293600	4548100	5105800	4911500			3200	863	2823	9079;9080;9081;9082;9083;9084	9552;9553;9554;9555;9556;9557;9558;9559	9554		835		7
LTEVQDDKEEEEEENPLLVPLEEK	Deamidation (NQ)	2854.3495	0.34952513	1587	sp|Q8IY81|SPB1_HUMAN	yes	yes	0	1	0	0	1									1	42.13	42.13	3	0.015541	12214	20190902_JH_WT_Ubi_3	57.227	23.538	0	0	0	0	0	0	0	0	0	0			3201	1587	2824	9085	9560	9560	516			1
LTFDEEAYKNVNQEVVDFEK	GlyGly (K)	2530.1864	0.18636339	1880	sp|Q9BUP3-3|HTAI2_HUMAN;sp|Q9BUP3|HTAI2_HUMAN;sp|Q9BUP3-2|HTAI2_HUMAN	yes	no	0	0	1	0	1			1							43.038	43.038	3	0.024292	11234	20190821_JH_WT_Ubi	48.372	23.205	1526500	0	0	1526500	0	0	0	0	0	0			3202	1880	2825	9086	9561	9561		1823		1
LTGIKHELQANCYEEVK	GlyGly (K)	2145.0525	0.052452861	667	sp|P23528|COF1_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1		27.786	27.786	3	2.9648E-10	7649	20190902_JH_WT_Ubi_2	141.55	108.11	15908000	0	1868200	4058200	0	0	1569000	2673000	5739900	0			3203	667	2826	9087;9088;9089;9090;9091	9562;9563;9564;9565;9566	9566		642;643		5
LTISPDYAYGATGHPGIIPPHATLVFDVELLK	Unmodified	3404.802	0.80202905	1073	sp|P62942|FKB1A_HUMAN	yes	yes	0	0	0	0	0			1							50.08	50.08	4	0.033467	13998	20190821_JH_WT_Ubi	24.623	7.1884	13157000	0	0	13157000	0	0	0	0	0	0			3204	1073	2827	9092	9567	9567				1
LTLYDIAHTPGVAADLSHIETK	Unmodified	2364.2325	0.23252572	816	sp|P40926-2|MDHM_HUMAN;sp|P40926|MDHM_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1		44.065	44.065	3;4	1.4579E-36	11127	20190902_JH_EV_Ubi_2	172.55	130.76	95250000	21779000	0	49682000	3644100	12348000	0	0	7797700	0			3205	816	2828	9093;9094;9095;9096;9097	9568;9569;9570;9571;9572	9569				5
LTPITYPQGLAMAKEIGAVK	GlyGly (K)	2214.2082	0.20822522	1075	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN	yes	no	0	0	1	0	1		1					1			43.68	43.68	3	9.8419E-05	11111	20190821_JH_MUT_Ubi	93.152	56.629	15842000	0	9060700	0	0	0	0	6781400	0	0			3206	1075	2829	9098;9099	9573;9574	9573		1060		2
LTPVSPESSSTEEKSSSQPSSCCSDPSK	GlyGly (K)	3098.3292	0.32921717	1246	sp|Q13501-2|SQSTM_HUMAN;sp|Q13501|SQSTM_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1		1	24.735	24.735	3	3.3896E-05	6409	20190902_JH_WT_Ubi_3	81.94	61.181	67792000	7895900	5055800	13854000	7867700	7038300	5710700	5374000	0	14996000			3207	1246	2830	9100;9101;9102;9103;9104;9105;9106;9107	9575;9576;9577;9578;9579;9580;9581;9582;9583	9582		1315;1316		9
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M)	2723.3259	0.32585053	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	0	0	1	0	1	2	1	1	1	3	1	1	2	45.971	45.971	3	1.4501E-12	11383	20190821_JH_MUT_Ubi	119.69	77.645	657570000	25913000	152870000	152410000	15011000	10034000	81314000	81568000	49097000	89351000			3208	1099;448	2831	9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120	9584;9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597	9587			251	14
LTTPTYGDLNHLVSATMSGVTTCLR	Unmodified	2707.3309	0.33093591	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	0	0	0	0	1	1	1		1	1	2	1	1	50.375	50.375	3	8.4379E-11	13116	20190902_JH_MUT_Ubi_3	110.03	80.55	688610000	23625000	237120000	215200000	0	1152000	76139000	59044000	25363000	50973000			3209	1099;448	2831	9121;9122;9123;9124;9125;9126;9127;9128;9129	9598;9599;9600;9601;9602;9603;9604;9605;9606	9602				9
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M);Deamidation (NQ)	2724.3099	0.30986611	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	1	0	1	0		1	1			1			1	42.932	42.932	3	0.0015259	10556	20190821_JH_WT_Ubi	70.679	40.087	10319000	0	2427300	3626100	0	0	0	0	0	4266000			3210	1099;448	2831	9130;9131;9132;9133	9607;9608;9609;9610;9611	9610	162		251	5
LTTPTYGDLNHLVSATMSGVTTCLR	Deamidation (NQ)	2708.315	0.31495149	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	1	0	0	0			1			1			1	46.237	46.237	3	0.00029829	12570	20190821_JH_WT_Ubi	77.689	50.852	13992000	0	0	10687000	0	0	660750	0	0	2644000			3211	1099;448	2831	9134;9135;9136	9612;9613;9614	9613	162			3
LTTPTYGDLNHLVSATMSGVTTSLR	Unmodified	2634.3323	0.33231612	1878	sp|Q9BUF5|TBB6_HUMAN	yes	yes	0	0	0	0	0	1		1			1	1	1	1	50.739	50.739	3	6.9422E-10	14448	20190902_JH_MUT_Ubi_2	101.16	77.433	18116000	931250	0	7630600	0	0	3242400	1960900	1188800	3161700			3212	1878	2832	9137;9138;9139;9140;9141;9142	9615;9616;9617;9618;9619;9620;9621	9616				7
LTTPTYGDLNHLVSATMSGVTTSLR	Oxidation (M)	2650.3272	0.32723074	1878	sp|Q9BUF5|TBB6_HUMAN	yes	yes	0	0	0	1	0		1			1	1	1	1	1	44.621	44.621	3	2.8447E-10	12849	20190902_JH_MUT_Ubi_2	107.88	86.278	25405000	0	8009600	0	0	653790	3770500	4746900	3052700	5171000			3213	1878	2832	9143;9144;9145;9146;9147;9148	9622;9623;9624;9625;9626;9627;9628	9624			1029	7
LVAEVSLQNPLPVALEGCTFTVEGAGLTEEQK	Unmodified	3398.7279	0.72793741	645	sp|P21980|TGM2_HUMAN	yes	yes	0	0	0	0	0	1	1	1							53.863	53.863	3	9.0823E-27	14349	20190821_JH_MUT_Ubi	139.57	120.44	69745000	3454500	13855000	52435000	0	0	0	0	0	0			3214	645	2833	9149;9150;9151	9629;9630;9631	9630				3
LVANHVASDISLTGGSVVQR	Unmodified	2022.0858	0.0858019	2110	sp|Q9UBV2|SE1L1_HUMAN	yes	yes	0	0	0	0	0			1							34.24	34.24	3	0.011274	7748	20190821_JH_WT_Ubi	52.814	1.5489	1364300	0	0	1364300	0	0	0	0	0	0			3215	2110	2834	9152	9632	9632				1
LVASKTDGKIVQYECEGDTCQEEK	2 GlyGly (K)	3014.3597	0.35972943	1534	sp|Q7Z569-2|BRAP_HUMAN;sp|Q7Z569|BRAP_HUMAN	yes	no	0	0	2	0	2		1								27.503	27.503	4	3.7175E-07	4920	20190821_JH_MUT_Ubi	100.59	74.379	1265100	0	1265100	0	0	0	0	0	0	0			3216	1534	2835	9153	9633	9633		1524;1525		1
LVEGILHAPDAGWGNLVYVVNYPK	Deamidation (NQ)	2624.3639	0.36387424	1217	sp|Q13148|TADBP_HUMAN	yes	yes	0	1	0	0	0							1			50.281	50.281	3	0.0010841	13152	20190902_JH_MUT_Ubi_3	73.448	39.44	0	0	0	0	0	0	0	0	0	0			3217	1217	2836	9154	9634	9634	399			1
LVEGILHAPDAGWGNLVYVVNYPK	Unmodified	2623.3799	0.37985866	1217	sp|Q13148|TADBP_HUMAN	yes	yes	0	0	0	0	0			1					1		50.896	50.896	3	4.8879E-07	14257	20190821_JH_WT_Ubi	97.256	65.135	5961600	0	0	5055500	0	0	0	0	906080	0			3218	1217	2836	9155;9156	9635;9636;9637	9635				3
LVEIVGMHDLGVGITLGAHQSIGFK	Oxidation (M)	2606.389	0.38904313	891	sp|P49748-2|ACADV_HUMAN;sp|P49748|ACADV_HUMAN;sp|P49748-3|ACADV_HUMAN	yes	no	0	0	0	1	0			1							42.753	42.753	4	0.011721	11071	20190821_JH_WT_Ubi	46.368	15.684	5717100	0	0	5717100	0	0	0	0	0	0			3219	891	2837	9157	9638	9638			564	1
LVFVHSAEGNEFWSALLEK	Unmodified	2175.1001	0.10005498	447	sp|P07384|CAN1_HUMAN	yes	yes	0	0	0	0	0			1					1		48.563	48.563	3	0.00016493	13432	20190821_JH_WT_Ubi	90.872	54.76	6665900	0	0	4028400	0	0	0	0	2637500	0			3220	447	2838	9158;9159	9639;9640	9639				2
LVGEFLEVTCINPTFICDHPQIMSPLAK	Oxidation (M)	3244.5971	0.59706335	1321	sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN	yes	no	0	0	0	1	0			1							51.447	51.447	3	0.00044755	14503	20190821_JH_WT_Ubi	63.158	42.738	1566800	0	0	1566800	0	0	0	0	0	0			3221	1321	2839	9160	9641	9641			826	1
LVGFISAIPANIHIYDTEK	Unmodified	2100.1255	0.12554145	733	sp|P30419-2|NMT1_HUMAN;sp|P30419|NMT1_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	46.691	46.691	3	2.1502E-05	12766	20190821_JH_EV_Ubi	107.51	73.886	31951000	9122600	2962300	10411000	0	0	1379200	1621100	2672700	3782100			3222	733	2840	9161;9162;9163;9164;9165;9166;9167	9642;9643;9644;9645;9646;9647;9648	9642				7
LVGQGASAVLLDLPNSGGEAQAK	Unmodified	2194.1594	0.15936077	1843	sp|Q99714|HCD2_HUMAN;sp|Q99714-2|HCD2_HUMAN	yes	no	0	0	0	0	0	1			1				1	1	43.323	43.323	3	0.0014014	12568	20190902_JH_WT_Ubi_3	66.137	21.536	9396500	1243700	0	0	899440	0	0	0	3125900	4127400			3223	1843	2841	9168;9169;9170;9171	9649;9650;9651;9652	9652				4
LVGVLVHSGQASGGHYYSYIIQR	Unmodified	2503.2972	0.29719166	1738	sp|Q93008-1|USP9X_HUMAN;sp|Q93008|USP9X_HUMAN;sp|O00507-2|USP9Y_HUMAN;sp|O00507|USP9Y_HUMAN	yes	no	0	0	0	0	0			1							36.143	36.143	3	3.8807E-07	8412	20190821_JH_WT_Ubi	101.23	63.602	4057300	0	0	4057300	0	0	0	0	0	0			3224	1738	2842	9172	9653	9653				1
LVHLQTLVLNGNPLLHAQLR	Deamidation (NQ)	2249.3008	0.30082047	1210	sp|Q13045-3|FLII_HUMAN;sp|Q13045|FLII_HUMAN	yes	no	0	1	0	0	0		1								44.091	44.091	3	0.00027547	11125	20190821_JH_MUT_Ubi	87.157	68.703	1128500	0	1128500	0	0	0	0	0	0	0			3225	1210	2843	9173	9654	9654	398			1
LVIGGAGGELIISAVAQAIMSK	Oxidation (M)	2113.1817	0.18167612	783	sp|P36269-2|GGT5_HUMAN;sp|P36269|GGT5_HUMAN;sp|P36269-3|GGT5_HUMAN	yes	no	0	0	0	1	0	1	1								56.141	56.141	3	1.7485E-09	14942	20190821_JH_MUT_Ubi	122.16	106.21	3036000	1199800	1836200	0	0	0	0	0	0	0			3226	783	2844	9174;9175	9655;9656;9657	9657			500	3
LVLDGNLLNNHGLGDK	GlyGly (K);2 Deamidation (NQ)	1806.9112	0.91119158	2077	sp|Q9NZU0|FLRT3_HUMAN	yes	yes	0	2	1	0	0			1							23.961	23.961	3	0.025786	4548	20190821_JH_WT_Ubi	46.318	11.2	5928700	0	0	5928700	0	0	0	0	0	0			3227	2077	2845	9176	9658	9658	658;659;660	1958		1
LVLEQVVTSIASVADTAEEK	Unmodified	2101.1154	0.11543027	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	0	0	0			1						1	54.714	54.714	3	2.5955E-05	15684	20190821_JH_WT_Ubi	101.23	69.045	3995800	0	0	2847000	0	0	0	0	0	1148800			3228	124	2846	9177;9178	9659;9660	9659				2
LVLLELNFLPTTGTKLTK	GlyGly (K)	2114.2351	0.2350919	874	sp|P48556|PSMD8_HUMAN	yes	yes	0	0	1	0	1		1								49.773	49.773	3	0.0043581	13117	20190821_JH_MUT_Ubi	70.197	52.732	1171700	0	1171700	0	0	0	0	0	0	0			3229	874	2847	9179	9661	9661		853		1
LVNQQLLADPLVPPQLTIK	Unmodified	2099.2354	0.23542625	708	sp|P28331-3|NDUS1_HUMAN;sp|P28331-4|NDUS1_HUMAN;sp|P28331-5|NDUS1_HUMAN;sp|P28331|NDUS1_HUMAN;sp|P28331-2|NDUS1_HUMAN	yes	no	0	0	0	0	0			1							50.849	50.849	3	0.00072336	14303	20190821_JH_WT_Ubi	78.661	65.507	3183200	0	0	3183200	0	0	0	0	0	0			3230	708	2848	9180	9662	9662				1
LVNSVAGCADDALAGLVACNPNLQLLQGHR	Unmodified	3145.5761	0.57608541	1407	sp|Q3LXA3-2|TKFC_HUMAN;sp|Q3LXA3|TKFC_HUMAN	yes	no	0	0	0	0	0		1	1							49.875	49.875	3	0.00010529	13885	20190821_JH_WT_Ubi	70.295	40.819	2443300	0	893350	1549900	0	0	0	0	0	0			3231	1407	2849	9181;9182	9663;9664	9664				2
LVPGGGATEIELAKQITSYGETCPGLEQYAIK	GlyGly (K)	3506.7603	0.76030017	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	1	0	1			1						1	48.369	48.369	3	0.010746	13387	20190821_JH_WT_Ubi	40.544	24.78	9069000	0	0	7136700	0	0	0	0	0	1932200			3232	912	2850	9183;9184	9665;9666	9665		876		2
LVPLLLEDGGEAPAALEAALEEK	Unmodified	2347.2523	0.25225811	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	0			1							54.505	54.505	3	0.00085997	15649	20190821_JH_WT_Ubi	70.453	29.697	1378600	0	0	1378600	0	0	0	0	0	0			3233	1284	2851	9185	9667	9667				1
LVPVLSAKAAQASDLEK	GlyGly (K)	1853.0258	0.025827405	797	sp|P37837|TALDO_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1		1	34.383	34.383	3	0.00064645	7671	20190821_JH_MUT_Ubi	93.427	67.869	112270000	7814400	12302000	26141000	5250200	0	14799000	17429000	0	28532000			3234	797	2852	9186;9187;9188;9189;9190;9191;9192	9668;9669;9670;9671;9672;9673;9674	9670		776		7
LVQAFQYTDEHGEVCPAGWK	Unmodified	2334.0739	0.073916585	752	sp|P32119|PRDX2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	37.376	37.376	3	9.9353E-05	11032	20190902_JH_WT_Ubi_2	88.551	48.922	53431000	0	0	33116000	0	0	0	0	14126000	6188800			3235	752	2853	9193;9194;9195	9675;9676;9677	9676				3
LVQDVANNTNEEAGDGTTTATVLAR	Unmodified	2559.2413	0.2412525	515	sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	35.344	35.344	3	1.325E-20	10308	20190902_JH_WT_Ubi_2	145.14	98.176	147840000	6841800	0	40999000	5517300	5532100	0	0	52533000	36417000			3236	515	2854	9196;9197;9198;9199;9200;9201	9678;9679;9680;9681;9682;9683	9682				6
LVQDVANNTNEEAGDGTTTATVLAR	Deamidation (NQ)	2560.2253	0.22526809	515	sp|P10809|CH60_HUMAN;sp|P10809-2|CH60_HUMAN	yes	no	0	1	0	0	0								2	1	36.601	36.601	3	6.8377E-07	10669	20190902_JH_WT_Ubi_2	97.068	58.692	20861000	0	0	0	0	0	0	0	12974000	7886500			3237	515	2854	9202;9203;9204	9684;9685;9686	9684	196;197;198			3
LVQIEYALAAVAGGAPSVGIK	Unmodified	2026.1463	0.14627689	682	sp|P25787|PSA2_HUMAN	yes	yes	0	0	0	0	0									1	52.775	52.775	3	0.00023417	15299	20190902_JH_WT_Ubi_3	80.236	54.646	1349700	0	0	0	0	0	0	0	0	1349700			3238	682	2855	9205	9687	9687				1
LVSLIGSKTQIPTQR	GlyGly (K)	1754.005	0.0050323835	681	sp|P25786|PSA1_HUMAN;sp|P25786-2|PSA1_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	33.148	33.148	3	3.0232E-15	8412	20190902_JH_MUT_Ubi_2	162.72	96.881	29787000	766130	3420400	5042200	0	725440	3768600	4493500	6150200	5420700			3239	681	2856	9206;9207;9208;9209;9210;9211;9212;9213	9688;9689;9690;9691;9692;9693;9694;9695	9691		666		8
LVSNHSLHETSSVFVDSLTK	Unmodified	2199.1172	0.11716161	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1			1			1	33.333	33.333	3;4	5.8123E-60	7422	20190821_JH_WT_Ubi	210.47	177.84	24148000	1068400	2314100	8156400	0	0	3356600	0	0	9252800			3240	637	2857	9214;9215;9216;9217;9218	9696;9697;9698;9699;9700	9699				5
LVSPGSANETSSILVESVTR	Unmodified	2045.0641	0.064063405	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0				1					1	41.688	41.688	3	0.0032626	12088	20190902_JH_WT_Ubi_3	64.249	21.602	1930300	0	0	0	252970	0	0	0	0	1677300			3241	282	2858	9219;9220	9701;9702;9703	9703				3
LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK	Oxidation (M)	3203.5445	0.54449374	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-5|ILF3_HUMAN;sp|Q12906-2|ILF3_HUMAN;sp|Q12906-3|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN;sp|Q12906-4|ILF3_HUMAN;sp|Q12906-6|ILF3_HUMAN	no	no	0	0	0	1	0	1	1	1		1	1	1	1	1	41.323	41.323	3	2.7392E-21	10797	20190821_JH_EV_Ubi	127.16	97.894	13078000	4187800	1937100	2029600	0	1360700	1459100	735500	0	1368100			3242	1200;1201	2859	9221;9222;9223;9224;9225;9226;9227;9228	9704;9705;9706;9707;9708;9709;9710;9711;9712;9713	9704			760	10
LVSSFLTTAMLK	Oxidation (M)	1325.7265	0.72647426	1528	sp|Q7Z3B3-4|KANL1_HUMAN	yes	yes	0	0	0	1	0									1	20.825	20.825	3	0.030815	5265	20190902_JH_WT_Ubi_3	64.82	23.116	0	0	0	0	0	0	0	0	0	0			3243	1528	2860	9229	9714	9714			915	1
LVSSHKPVQNQKQK	2 Deamidation (NQ)	1621.8788	0.87876924	164	sp|O14965|AURKA_HUMAN	yes	yes	0	2	0	0	2		1								21.367	21.367	4	0.028306	3319	20190821_JH_MUT_Ubi	51.612	19.948	14005000	0	14005000	0	0	0	0	0	0	0			3244	164	2861	9230	9715	9715	763;764;765			1
LVSYTNLTQGAKEHEEAESGEGTR	GlyGly (K)	2719.2685	0.26852989	2183	sp|Q9UP95-5|S12A4_HUMAN;sp|Q9UP95-2|S12A4_HUMAN;sp|Q9UP95-6|S12A4_HUMAN;sp|Q9UP95|S12A4_HUMAN;sp|Q9UP95-7|S12A4_HUMAN;sp|Q9UP95-3|S12A4_HUMAN;sp|Q9UP95-4|S12A4_HUMAN	yes	no	0	0	1	0	1						1				28.127	28.127	3	0.00026354	6674	20190902_JH_MUT_Ubi_2	75.611	52.676	806470	0	0	0	0	0	806470	0	0	0			3245	2183	2862	9231	9716	9716		2043		1
LVTLPDITSVAKSLGAK	GlyGly (K)	1826.0513	0.051313874	1778	sp|Q96GA7|SDSL_HUMAN	yes	yes	0	0	1	0	1		1								47.126	47.126	3	0.0098761	12269	20190821_JH_MUT_Ubi	63.754	32.365	2758300	0	2758300	0	0	0	0	0	0	0			3246	1778	2863	9232	9717	9717		1748		1
LVTSPCCIVTSTYGWTANMER	Unmodified	2445.1127	0.11268663	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	0	0			1							46.652	46.652	2	1.7493E-05	12656	20190821_JH_WT_Ubi	89.911	63.546	1669100	0	0	1669100	0	0	0	0	0	0			3247	455	2864	9233	9718	9718				1
LWNLQKTVPAK	2 GlyGly (K);2 Deamidation (NQ)	1526.8093	0.80929269	1209	sp|Q13033-2|STRN3_HUMAN;sp|Q13033|STRN3_HUMAN	yes	no	0	2	2	0	1					1					30.603	30.603	3	0.027416	7145	20190902_JH_EV_Ubi_3	76.228	20.141	5035200	0	0	0	0	5035200	0	0	0	0			3248	1209	2865	9234	9719	9719	397;1011	1276;1277		1
LWNSQSSIDQKLANQINDLR	2 Deamidation (NQ)	2344.1659	0.16590271	266	sp|P61567|ENK7_HUMAN;sp|P61566|ENK24_HUMAN;sp|P61570|ENK25_HUMAN;sp|Q9UKH3|ENK9_HUMAN;sp|P61565|ENK21_HUMAN;sp|Q902F9|EN113_HUMAN;sp|Q902F8|ENK8_HUMAN;sp|Q69384|ENK6_HUMAN;sp|O71037|ENK19_HUMAN;sp|P63135|POK7_HUMAN	yes	no	0	2	0	0	1									1	40.61	40.61	3	0.019471	11651	20190902_JH_WT_Ubi_3	68.243	14.678	70869000	0	0	0	0	0	0	0	0	70869000			3249	266	2866	9235	9720	9720	95;794			1
LWNTLGVCKYTVQDESHSEWVSCVR	GlyGly (K)	3166.4601	0.4600526	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	1	0	1			1							39.387	39.387	4	0.010333	9687	20190821_JH_WT_Ubi	48.077	14.412	5035900	0	0	5035900	0	0	0	0	0	0			3250	1085	2867	9236	9721	9721		1079		1
LYGSAGPPPTGEEDTAEKDEL	Unmodified	2174.9855	0.98553831	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	1								1		34.857	34.857	2	0.025528	10197	20190902_JH_WT_Ubi_2	60.968	40.861	8424300	0	0	0	0	0	0	0	8424300	0			3251	517	2868	9237	9722	9722				0
LYISGPNKDKFCPSTVNSLNCLK	2 GlyGly (K);2 Deamidation (NQ)	2884.3735	0.373529	2123	sp|Q9UHC9-4|NPCL1_HUMAN;sp|Q9UHC9-2|NPCL1_HUMAN;sp|Q9UHC9|NPCL1_HUMAN	yes	no	0	2	2	0	2								1		35.821	35.821	3	0.014364	10426	20190902_JH_WT_Ubi_2	58.49	18.842	1879600	0	0	0	0	0	0	0	1879600	0			3252	2123	2869	9238	9723	9723	673;674	1992;1993		1
LYLENNAQTQFSEYSTELK	GlyGly (K);2 Deamidation (NQ)	2393.0911	0.091066016	1943	sp|Q9H3D4-10|P63_HUMAN	yes	yes	0	2	1	0	0				1						32.871	32.871	3	0.027362	7880	20190902_JH_EV_Ubi_2	51.591	25.745	0	0	0	0	0	0	0	0	0	0			3253	1943	2870	9239	9724	9724	619;1245	1878		1
LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD	2 Oxidation (M)	3377.4816	0.48163548	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	0	0	2	0			1					1	1	44.259	44.259	3	0.00011499	13306	20190902_JH_WT_Ubi_2	55.407	38.331	38750000	0	0	9822000	0	0	0	0	12753000	16175000			3254	519	2871	9240;9241;9242	9725;9726;9727	9726			308;309	3
LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD	2 Oxidation (M);Deamidation (NQ)	3378.4657	0.46565107	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	1	0	2	0								1		45.362	45.362	3	2.4106E-05	13638	20190902_JH_WT_Ubi_2	64.045	38.361	1085300	0	0	0	0	0	0	0	1085300	0			3255	519	2871	9243	9728	9728	857		308;309	1
LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD	Oxidation (M)	3361.4867	0.48672086	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	0	0	1	0								1	1	47.083	47.083	3	0.00013491	13820	20190902_JH_WT_Ubi_3	54.596	27.807	3051200	0	0	0	0	0	0	0	1887900	1163400			3256	519	2871	9244;9245	9729;9730	9730			308;309	2
MAARTLGRGVGR	Acetyl (Protein N-term);Oxidation (M)	1301.6986	0.6986368	2032	sp|Q9NUB1-4|ACS2L_HUMAN;sp|Q9NUB1-2|ACS2L_HUMAN;sp|Q9NUB1|ACS2L_HUMAN	yes	no	1	0	0	1	2						1				25.04	25.04	3	0.023356	5705	20190902_JH_MUT_Ubi_2	49.466	8.3858	5731800	0	0	0	0	0	5731800	0	0	0			3257	2032	2872	9246	9731	9731			1092	1
MAAVILESIFLK	Acetyl (Protein N-term);Oxidation (M)	1391.7734	0.77342445	1165	sp|Q06187|BTK_HUMAN	yes	yes	1	0	0	1	0	1									48.338	48.338	2	0.035409	13171	20190821_JH_EV_Ubi	41.448	7.0616	633310	633310	0	0	0	0	0	0	0	0			3258	1165	2873	9247	9732	9732				0
MADDIDIEAMLEAPYKKDENK	Acetyl (Protein N-term);Oxidation (M)	2496.14	0.14000682	1294	sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN	yes	no	1	0	0	1	2			1							40.225	40.225	3	0.010456	10044	20190821_JH_WT_Ubi	47.754	14.829	5247900	0	0	5247900	0	0	0	0	0	0			3259	1294	2874	9248	9733	9733			806	1
MADELSEKQVYDAHTK	Oxidation (M);GlyGly (K)	1993.9051	0.90511992	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	0	0	1	1	1	1	1	1	2	1	1	1	1	1	23.804	23.804	3;4	1.4556E-13	6099	20190902_JH_WT_Ubi_3	153.22	111.53	407050000	67366000	3930600	9754800	141790000	108030000	8042000	6770900	39790000	21571000			3260	1148	2875	9249;9250;9251;9252;9253;9254;9255;9256;9257;9258	9734;9735;9736;9737;9738;9739;9740;9741;9742;9743	9743		1146;1147	717	10
MADELSEKQVYDAHTK	GlyGly (K)	1977.9102	0.9102053	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	0	0	1	0	1	1	2	1	1	1	2	2	1	1	25.527	25.527	3;4	2.4766E-05	5002	20190821_JH_WT_Ubi	117.07	86.897	87964000	16134000	5240000	5017800	11997000	16256000	10736000	6842600	6295600	9445700			3261	1148	2875	9259;9260;9261;9262;9263;9264;9265;9266;9267;9268;9269;9270	9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755	9753		1146;1147		12
MADELSEKQVYDAHTK	Acetyl (Protein N-term);GlyGly (K)	2019.9208	0.92076999	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	1	0	1	0	1	1			1	1					28.009	28.009	3	0.0040732	6221	20190902_JH_EV_Ubi_3	72.315	26.526	5575700	1623100	0	0	2036900	1915600	0	0	0	0			3262	1148	2875	9271;9272;9273	9756;9757;9758;9759	9759		1146;1147		4
MADELSEKQVYDAHTK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1994.8891	0.88913551	1148	sp|Q03135-2|CAV1_HUMAN	yes	yes	0	1	1	1	1					1					24.459	24.459	3	5.2305E-07	5251	20190902_JH_EV_Ubi_3	131.4	85.404	3456300	0	0	0	0	3456300	0	0	0	0			3263	1148	2875	9274	9760	9760	995	1146;1147	717	1
MAEVVSPVPGAGRR	Oxidation (M)	1440.7507	0.75073195	1736	sp|Q92993-4|KAT5_HUMAN;sp|Q92993-3|KAT5_HUMAN	yes	no	0	0	0	1	1			1							50.003	50.003	2	0.018266	13984	20190821_JH_WT_Ubi	59.426	29.652	1808200	0	0	1808200	0	0	0	0	0	0			3264	1736	2876	9275	9761	9761			985	0
MAGLPIPPEIVK	GlyGly (K)	1377.769	0.76900778	1976	sp|Q9H9R9-2|DBND1_HUMAN	yes	yes	0	0	1	0	0				1						25.648	25.648	2	0.028231	5511	20190902_JH_EV_Ubi_2	64.265	10.71	2217100	0	0	0	2217100	0	0	0	0	0			3265	1976	2877	9276	9762	9762		1904		0
MALIQMGSVEEAVQALIDLHNHDLGENHHLR	Unmodified	3489.7245	0.72454056	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0		1	1							51.19	51.19	6	0.026417	13581	20190821_JH_MUT_Ubi	30.274	9.424	3929500	0	1403200	2526300	0	0	0	0	0	0			3266	690	2878	9277;9278	9763;9764	9763				2
MALIQMGSVEEAVQALIDLHNHDLGENHHLR	2 Oxidation (M)	3521.7144	0.71436981	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	2	0									1	45.35	45.35	6	0.026853	13262	20190902_JH_WT_Ubi_3	51.963	29.723	5864900	0	0	0	0	0	0	0	0	5864900			3267	690	2878	9279	9765	9765			429;430	1
MALLMAEMSRLVRGGSGTK	2 Oxidation (M)	2039.0326	0.032585817	610	sp|P18206-2|VINC_HUMAN;sp|P18206|VINC_HUMAN	yes	no	0	0	0	2	2						1				46.999	46.999	3	0.029148	13718	20190902_JH_MUT_Ubi_2	40.515	15.721	8361200	0	0	0	0	0	8361200	0	0	0			3268	610	2879	9280	9766	9766			375;376	1
MAPGEKIKAK	Acetyl (Protein N-term);Oxidation (M);2 GlyGly (K)	1357.7024	0.70238478	917	sp|P51170|SCNNG_HUMAN	yes	yes	1	0	2	1	2				1						19.376	19.376	3	0.020122	4069	20190902_JH_EV_Ubi_2	48.602	12.268	703770	0	0	0	703770	0	0	0	0	0			3269	917	2880	9281	9767	9767		883;884	577	1
MDAGVTESGLNVTLTIR	Acetyl (Protein N-term);Oxidation (M)	1833.9142	0.91422805	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	1	0	0	1	0			1							50.132	50.132	2	0.0046483	14076	20190821_JH_WT_Ubi	74.537	16.752	1147800	0	0	1147800	0	0	0	0	0	0			3270	1341	2881	9282	9768	9768			841	0
MDCVQQRKK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1322.6071	0.60710418	1322	sp|Q15047-2|SETB1_HUMAN;sp|Q15047-3|SETB1_HUMAN;sp|Q15047|SETB1_HUMAN	yes	no	0	1	1	1	2					1					35.059	35.059	2	0.0091534	8599	20190902_JH_EV_Ubi_3	91.9	32.919	1015100	0	0	0	0	1015100	0	0	0	0			3271	1322	2882	9283	9769	9769	1038	1381	829	1
MDLENLKDVLSRQK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	1933.9415	0.94150543	366	sp|O95841|ANGL1_HUMAN	yes	yes	0	2	2	1	2			1							41.021	41.021	3	0.025164	10339	20190821_JH_WT_Ubi	53.001	16.556	4215700	0	0	4215700	0	0	0	0	0	0			3272	366	2883	9284	9770	9770	116;809	326;327	163	0
MDMTFSKQNALLR	2 Oxidation (M)	1585.7592	0.75924773	403	sp|P04114|APOB_HUMAN	yes	yes	0	0	0	2	1			1							34.991	34.991	3	0.03672	8016	20190821_JH_WT_Ubi	42.425	9.6909	1771800	0	0	1771800	0	0	0	0	0	0			3273	403	2884	9285	9771	9771				0
MDPNCSCAAGDSCTCAGSCK	Acetyl (Protein N-term);Oxidation (M)	2265.7523	0.7523425	394	sp|P02795|MT2_HUMAN	yes	yes	1	0	0	1	0			1					1	1	26.433	26.433	3	1.9115E-07	5225	20190821_JH_WT_Ubi	121.48	121.48	10928000	0	0	2664400	0	0	0	0	4198700	4064400			3274	394	2885	9286;9287;9288	9772;9773;9774	9772			184	3
MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR	Acetyl (Protein N-term);2 Oxidation (M);GlyGly (K)	3675.6992	0.69923283	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN	yes	no	1	0	1	2	1				1		1	1			43.976	43.976	3	2.4106E-05	11190	20190902_JH_EV_Ubi_2	67.353	45.114	2958700	0	0	0	542190	0	1735600	680890	0	0			3275	202	2886	9289;9290;9291	9775;9776;9777	9775		182	81;82	3
MDSNIQGIENPGFEASPPAQGIPEAKVR	Oxidation (M);GlyGly (K)	3081.4826	0.48256218	1967	sp|Q9H7M9|VISTA_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1		1	1	1	1	38.201	38.201	3	1.7451E-39	11312	20190902_JH_WT_Ubi_2	162.35	130.09	123390000	16116000	9352200	21262000	7568100	0	17339000	12251000	22824000	16678000			3276	1967	2887	9292;9293;9294;9295;9296;9297;9298;9299	9778;9779;9780;9781;9782;9783;9784;9785;9786	9785		1899	1069	9
MDSNIQGIENPGFEASPPAQGIPEAKVR	GlyGly (K)	3065.4876	0.48764756	1967	sp|Q9H7M9|VISTA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.206	39.206	3	1.6128E-85	9668	20190821_JH_WT_Ubi	214.18	170.19	77948000	6410000	10034000	20291000	2282600	2342600	6340200	8061000	11486000	10700000			3277	1967	2887	9300;9301;9302;9303;9304;9305;9306;9307;9308	9787;9788;9789;9790;9791;9792;9793;9794;9795;9796;9797;9798;9799	9795		1899		13
MDSNIQGIENPGFEASPPAQGIPEAKVR	Oxidation (M);GlyGly (K);Deamidation (NQ)	3082.4666	0.46657777	1967	sp|Q9H7M9|VISTA_HUMAN	yes	yes	0	1	1	1	1					1		1	1	1	38.689	38.689	3	9.4881E-40	11009	20190902_JH_WT_Ubi_3	169.8	117.28	13376000	0	0	0	0	2075000	0	1002500	4755700	5542600			3278	1967	2887	9309;9310;9311;9312	9800;9801;9802;9803;9804	9804	623;624;1253;1254	1899	1069	5
MDSNIQGIENPGFEASPPAQGIPEAKVR	GlyGly (K);Deamidation (NQ)	3066.4717	0.47166314	1967	sp|Q9H7M9|VISTA_HUMAN	yes	yes	0	1	1	0	1						1		1	1	39.884	39.884	3	1.1417E-10	11911	20190902_JH_WT_Ubi_2	110.06	69.823	5922800	0	0	0	0	0	736330	0	2965700	2220800			3279	1967	2887	9313;9314;9315	9805;9806;9807	9806	623;624;1253;1254	1899		3
MDSQKEALQRIISTLANK	Acetyl (Protein N-term);GlyGly (K)	2201.1474	0.14741588	1897	sp|Q9BXM9-2|FSD1L_HUMAN;sp|Q9BXM9-3|FSD1L_HUMAN	yes	no	1	0	1	0	2	1									43.959	43.959	3	0.021039	11666	20190821_JH_EV_Ubi	60.768	12.145	16442000	16442000	0	0	0	0	0	0	0	0			3280	1897	2888	9316	9808	9808		1837		1
MDVNVGDIDIEGPEGK	Oxidation (M)	1702.772	0.77198048	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	1	0								1		39.353	39.353	2	0.026878	11611	20190902_JH_WT_Ubi_2	57.425	27.094	0	0	0	0	0	0	0	0	0	0			3281	1190	2889	9317	9809	9809			751	1
MEDATANGQEDSKAPDGSTLK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2294.9809	0.98086364	1900;1901	sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN;sp|Q9BXS9-2|S26A6_HUMAN;sp|Q9BXS9-5|S26A6_HUMAN;sp|Q9BXS9-4|S26A6_HUMAN;sp|Q9BXS9-3|S26A6_HUMAN	no	no	0	1	1	1	1		1			1	1				23.472	23.472	3	4.9584E-21	5184	20190902_JH_MUT_Ubi_2	149.34	111.22	3977300	0	715340	0	0	1926300	1335600	0	0	0			3282	1900;1901	2890	9318;9319;9320	9810;9811;9812	9812	604;1230	1841	1041	3
MEDEEKAVEILGNTEAAHPPSPIR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2804.3287	0.3286873	64	sp|A0A087WTH1|TM265_HUMAN	yes	yes	1	0	1	1	1				1	1					42.047	42.047	3	1.6943E-05	10615	20190902_JH_EV_Ubi_2	85.884	58.342	2289100	0	0	0	869970	1419200	0	0	0	0			3283	64	2891	9321;9322	9813;9814;9815	9813		63	36	3
MEDLDQSPLVSSSDSPPRPQPAFK	Acetyl (Protein N-term);Oxidation (M)	2685.2592	0.25921075	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN;sp|Q9NQC3-4|RTN4_HUMAN	yes	no	1	0	0	1	1			1					1	1	41.238	41.238	3	3.0128E-07	11830	20190902_JH_WT_Ubi_3	97.589	74.686	24660000	0	0	6239900	0	0	0	0	9709700	8710700			3284	2005	2892	9323;9324;9325	9816;9817;9818	9818			1082	3
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);4 Oxidation (M)	3012.232	0.23195142	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	1	0	0	4	1			1					1	1	47.282	47.282	3	4.8461E-05	13837	20190902_JH_WT_Ubi_3	91.64	63.246	6357000	0	0	1855500	0	0	0	0	2755200	1746300			3285	438	2893	9326;9327;9328	9819;9820;9821	9821			234;235;236;237	3
MEDSVGCLETAEEVK	Oxidation (M)	1711.7281	0.72806676	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	1	0								1	1	32.55	32.55	2	1.4328E-10	8866	20190902_JH_WT_Ubi_3	144.47	102.47	19452000	0	0	0	0	0	0	0	10318000	9133800			3286	776	2894	9329;9330	9822;9823	9823			490	0
MEGGFGSDFGGSGSGK	Acetyl (Protein N-term);Oxidation (M)	1533.6042	0.60418687	2244	sp|Q9Y5L4|TIM13_HUMAN	yes	yes	1	0	0	1	0								1	1	38.443	38.443	2	0.024696	11355	20190902_JH_WT_Ubi_2	51.726	29.945	4171100	0	0	0	0	0	0	0	2184900	1986300			3287	2244	2895	9331;9332	9824;9825	9824			1156	0
MEGGFGSDFGGSGSGKLDPGLIMEQVK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2871.3055	0.30550902	2244	sp|Q9Y5L4|TIM13_HUMAN	yes	yes	1	0	1	1	1						1	1			49.527	49.527	3	5.4772E-05	14250	20190902_JH_MUT_Ubi_2	76.21	44.175	1133600	0	0	0	0	0	740340	393280	0	0			3288	2244	2896	9333;9334	9826;9827	9826		2083	1156	2
MEGGGAEVHAQLPSLEGDLR	Oxidation (M)	2080.9848	0.98476723	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	1	0			1			1	1	1		35.922	35.922	3	1.8976E-05	8424	20190821_JH_WT_Ubi	105.5	66.357	9514600	0	0	3465400	0	0	1315500	838480	3895200	0			3289	1190	2897	9335;9336;9337;9338	9828;9829;9830;9831	9830			752	4
MEGNKLEEQDSSPPQSTPGLMK	Acetyl (Protein N-term);2 Oxidation (M);GlyGly (K)	2590.1527	0.15269677	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN	yes	no	1	0	1	2	1	1	1		1	1	1				31.198	31.198	3	5.5859E-06	7299	20190902_JH_EV_Ubi_2	89.47	54.033	7447500	2121400	794740	0	1981700	1679600	870160	0	0	0			3290	794	2898	9339;9340;9341;9342;9343	9832;9833;9834;9835;9836	9833		771;773	503;504	5
MEGNKLEEQDSSPPQSTPGLMKGNK	Acetyl (Protein N-term);2 Oxidation (M);2 GlyGly (K)	3003.355	0.35497841	794	sp|P37088-3|SCNNA_HUMAN;sp|P37088-4|SCNNA_HUMAN;sp|P37088|SCNNA_HUMAN;sp|P37088-5|SCNNA_HUMAN	yes	no	1	0	2	2	2	1			1	1					27.65	27.65	3	6.2001E-14	6121	20190902_JH_EV_Ubi_3	125.78	96.283	10352000	3518100	0	0	3180700	3652800	0	0	0	0			3291	794	2899	9344;9345;9346	9837;9838;9839	9839		771;772;773	503;504	3
MEIDDLASNMETVSKAKGNLEK	Oxidation (M);3 GlyGly (K)	2780.2957	0.29567261	539	sp|P12882|MYH1_HUMAN	yes	yes	0	0	3	1	2							1			38.755	38.755	3	0.030899	9902	20190902_JH_MUT_Ubi_3	43.116	8.3229	0	0	0	0	0	0	0	0	0	0			3292	539	2900	9347	9840	9840			320	1
MEKSNETNGYLDSAQAGPAAGPGAPGTAAGR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K);Deamidation (NQ)	3118.3898	0.38978401	837	sp|P43007|SATT_HUMAN	yes	yes	1	1	1	1	1	1	1		2	1	1				34.819	34.819	3	2.4347E-61	8398	20190902_JH_EV_Ubi_3	184.93	159.25	32337000	6785700	4747100	0	8255800	6349900	6198500	0	0	0			3293	837	2901	9348;9349;9350;9351;9352;9353	9841;9842;9843;9844;9845;9846	9844	293;294;925	809	531	6
MEKSNETNGYLDSAQAGPAAGPGAPGTAAGR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K);2 Deamidation (NQ)	3119.3738	0.37379959	837	sp|P43007|SATT_HUMAN	yes	yes	1	2	1	1	1					1				1	34.886	34.886	3	1.3649E-24	9649	20190902_JH_WT_Ubi_3	138.12	112.97	1886600	0	0	0	0	471080	0	0	0	1415500			3294	837	2901	9354;9355	9847;9848	9848	293;294;925	809	531	2
MEKSNETNGYLDSAQAGPAAGPGAPGTAAGR	Acetyl (Protein N-term);GlyGly (K);2 Deamidation (NQ)	3103.3789	0.37888497	837	sp|P43007|SATT_HUMAN	yes	yes	1	2	1	0	1							1			36.942	36.942	3	9.9551E-05	9371	20190902_JH_MUT_Ubi_3	101	66.547	0	0	0	0	0	0	0	0	0	0			3295	837	2901	9356	9849	9849	293;294;925	809		1
MEKYVIESSSHTPELAR	Oxidation (M);GlyGly (K)	2106.0052	0.0051683175	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	1	1	2	1			1	1	1		1	26.843	26.843	3;4	1.3859E-19	6156	20190902_JH_MUT_Ubi_2	168.68	128.67	17460000	5273100	1307900	0	0	1888700	4325900	1804900	0	2859900			3296	1614	2902	9357;9358;9359;9360;9361;9362;9363	9850;9851;9852;9853;9854;9855;9856	9854		1611	942	6
MELGELLYNKSEYIETASGNK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2560.2003	0.20029889	1872	sp|Q9BTE1-3|DCTN5_HUMAN;sp|Q9BTE1-2|DCTN5_HUMAN;sp|Q9BTE1|DCTN5_HUMAN	yes	no	1	0	1	1	1			1						1	50.079	50.079	3	0.0020658	13983	20190821_JH_WT_Ubi	62.792	37.941	1281400	0	0	786680	0	0	0	0	0	494730			3297	1872	2903	9364;9365	9857;9858	9857		1817	1028	2
MENSDSNDKGSGDQSAAQR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2167.8672	0.86723087	2049	sp|Q9NVW2|RNF12_HUMAN	yes	yes	1	0	1	1	1		1		1	1					18.299	18.299	3	3.7276E-06	3814	20190902_JH_EV_Ubi_2	110.77	89.514	964790	0	160610	0	479060	325120	0	0	0	0			3298	2049	2904	9366;9367;9368	9859;9860;9861	9859		1941	1101	1
MEPKVAELKQK	Acetyl (Protein N-term);GlyGly (K)	1455.7755	0.77554972	2234	sp|Q9Y4U1|MMAC_HUMAN	yes	yes	1	0	1	0	2						1				24.298	24.298	3	0.025295	5451	20190902_JH_MUT_Ubi_2	82.831	6.4988	3417900	0	0	0	0	0	3417900	0	0	0			3299	2234	2905	9369	9862	9862		2075		1
MESGAYGAAKAGGSFDLR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	1958.8792	0.87923952	218	sp|O43760|SNG2_HUMAN;sp|O43760-2|SNG2_HUMAN	yes	no	1	0	1	1	1	1						1			35.569	35.569	2;3	0.0026698	8674	20190821_JH_EV_Ubi	101.45	68.395	8344200	7204000	0	0	0	0	0	1140200	0	0			3300	218	2906	9370;9371	9863;9864	9863		199	91	2
MESGFTSKDTYLSHFNPR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2288.0168	0.016795636	810	sp|P40261|NNMT_HUMAN	yes	yes	1	0	1	1	1							1			36.488	36.488	3	0.032175	9239	20190902_JH_MUT_Ubi_3	45.723	28.293	0	0	0	0	0	0	0	0	0	0			3301	810	2907	9372	9865	9865			516	1
METTHSFGNPSISVSTQQPPK	Oxidation (M)	2288.0743	0.074310515	1741	sp|Q93052|LPP_HUMAN	yes	yes	0	0	0	1	0	1		1					1		29.913	29.913	3	4.3237E-05	6267	20190821_JH_WT_Ubi	86.546	54.728	7486100	1936600	0	2356700	0	0	0	0	3192800	0			3302	1741	2908	9373;9374;9375	9866;9867;9868	9867			990	3
METTHSFGNPSISVSTQQPPK	Unmodified	2272.0794	0.079395893	1741	sp|Q93052|LPP_HUMAN	yes	yes	0	0	0	0	0		1							1	30.715	30.715	3	0.026533	6329	20190821_JH_MUT_Ubi	50.397	10.88	2449200	0	0	0	0	0	0	0	0	2449200			3303	1741	2908	9376;9377	9869;9870	9869				2
MEVNCLTLKDLISPR	Acetyl (Protein N-term)	1829.9379	0.93794038	1756	sp|Q96AV8-2|E2F7_HUMAN;sp|Q96AV8-3|E2F7_HUMAN;sp|Q96AV8|E2F7_HUMAN	yes	no	1	0	0	0	1									1	48.952	48.952	2	0.011145	14355	20190902_JH_WT_Ubi_3	65.395	9.3008	1866300	0	0	0	0	0	0	0	0	1866300			3304	1756	2909	9378	9871	9871				0
MFDSSNYHGQDLLFK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1931.836	0.83597772	471	sp|P08582|TRFM_HUMAN	yes	yes	0	1	1	1	0								1		18.602	18.602	3	0.030961	4592	20190902_JH_WT_Ubi_2	45.115	16.483	1537500	0	0	0	0	0	0	0	1537500	0			3305	471	2910	9379	9872	9872	176		273	1
MFLGDNAHLSIINEYLSQSYQK	Oxidation (M)	2586.2424	0.24243848	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	46.611	46.611	3	6.1317E-22	12705	20190821_JH_WT_Ubi	149.53	108.84	18207000	0	2268800	7197200	0	0	1395500	1008300	2836100	3501300			3306	863	2911	9380;9381;9382;9383;9384;9385	9873;9874;9875;9876;9877;9878;9879	9877			543	7
MFLGDNAHLSIINEYLSQSYQK	Unmodified	2570.2475	0.24752385	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0		1								48.622	48.622	3	0.0021404	12755	20190821_JH_MUT_Ubi	63.447	32.336	1595800	0	1595800	0	0	0	0	0	0	0			3307	863	2911	9386	9880	9880				1
MFRCGGLAAGALK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	1522.7385	0.73845271	363	sp|O95831-4|AIFM1_HUMAN;sp|O95831-2|AIFM1_HUMAN;sp|O95831-3|AIFM1_HUMAN;sp|O95831|AIFM1_HUMAN	yes	no	1	0	1	1	1			3			1	1	1	1	38.862	38.862	3	0.017143	9648	20190902_JH_MUT_Ubi_3	57.019	15.619	251300000	0	0	87192000	0	0	5114200	4751500	92547000	61693000			3308	363	2912	9387;9388;9389;9390;9391;9392;9393	9881;9882;9883;9884;9885;9886;9887	9882		324	162	7
MGAFLDKPKTEK	Acetyl (Protein N-term)	1405.7275	0.72753689	300	sp|O75688|PPM1B_HUMAN;sp|O75688-5|PPM1B_HUMAN;sp|O75688-4|PPM1B_HUMAN;sp|O75688-2|PPM1B_HUMAN	yes	no	1	0	0	0	2				1						26.005	26.005	3	0.030699	5673	20190902_JH_EV_Ubi_2	48.004	7.28	515150	0	0	0	515150	0	0	0	0	0			3309	300	2913	9394	9888	9888				0
MGEMEQLRQEAEQLKK	Acetyl (Protein N-term);Deamidation (NQ)	1989.95	0.94996162	590	sp|P16520-2|GBB3_HUMAN;sp|P16520|GBB3_HUMAN	yes	no	1	1	0	0	2								1		36.801	36.801	3	0.024732	10764	20190902_JH_WT_Ubi_2	45.33	19.182	2214400	0	0	0	0	0	0	0	2214400	0			3310	590	2914	9395	9889	9889	865			1
MGGEAPELALDPVPQDASTKK	GlyGly (K)	2267.1104	0.11036167	1176	sp|Q07812-5|BAX_HUMAN;sp|Q07812-8|BAX_HUMAN;sp|Q07812|BAX_HUMAN;sp|Q07812-2|BAX_HUMAN;sp|Q07812-7|BAX_HUMAN	yes	no	0	0	1	0	1		1				1				35.715	35.715	3	0.0085729	8154	20190821_JH_MUT_Ubi	59.9	25.952	3118100	0	1131600	0	0	0	1986600	0	0	0			3311	1176	2915	9396;9397	9890;9891	9890		1166;1167		2
MGLVDQLVEPLGPGLKPPEER	Oxidation (M)	2289.2039	0.20386813	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	1	1									1	44.601	44.601	3	0.032848	13003	20190902_JH_WT_Ubi_3	55.763	32.663	3403000	0	0	0	0	0	0	0	0	3403000			3312	818	2916	9398	9892	9892				1
MGLVDQLVEPLGPGLKPPEER	Unmodified	2273.209	0.2089535	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	1									1	46.476	46.476	3	0.0047377	13627	20190902_JH_WT_Ubi_3	73.11	27.853	1409100	0	0	0	0	0	0	0	0	1409100			3313	818	2916	9399	9893	9893				1
MGPGATAGGAEKSNVK	Oxidation (M);GlyGly (K)	1603.7624	0.76241885	1058	sp|P62820|RAB1A_HUMAN;sp|P62820-3|RAB1A_HUMAN;sp|P62820-2|RAB1A_HUMAN	yes	no	0	0	1	1	1		1		1			1	1		16.999	16.999	3	1.7326E-13	2588	20190821_JH_MUT_Ubi	152.11	96.654	16435000	0	2138700	0	3746100	0	0	2803900	7746800	0			3314	1058	2917	9400;9401;9402;9403	9894;9895;9896;9897	9895		1033;1034	650	4
MGQQVGRVGEAPGLQQPQPR	3 Deamidation (NQ)	2135.043	0.042950807	832	sp|P42684-8|ABL2_HUMAN;sp|P42684-7|ABL2_HUMAN;sp|P42684-5|ABL2_HUMAN;sp|P42684-6|ABL2_HUMAN;sp|P42684|ABL2_HUMAN	yes	no	0	3	0	0	1						1				30.283	30.283	3	0.034992	7439	20190902_JH_MUT_Ubi_2	49.537	15.105	1644100	0	0	0	0	0	1644100	0	0	0			3315	832	2918	9404	9898	9898	920;921;922			1
MGSMVVSIAEELIESNYR	Unmodified	2026.9704	0.97036272	45		yes	no	0	0	0	0	0	1									41.416	41.416	3	0.0054111	10716	20190821_JH_EV_Ubi	63.681	10.513	979220	979220	0	0	0	0	0	0	0	0	+		3316	45	2919	9405	9899	9899				1
MGYKTIMVNYNPETVSTDYDMCDR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3049.245	0.24495895	701	sp|P27708|PYR1_HUMAN	yes	yes	0	1	1	2	1							1			37.381	37.381	3	0.011741	9474	20190902_JH_MUT_Ubi_3	58.373	39.163	0	0	0	0	0	0	0	0	0	0			3317	701	2921	9406	9900	9900	246;247	686	442;443	1
MHESLKLFDSICNNK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1966.8765	0.87646233	489	sp|P09471-2|GNAO_HUMAN	yes	yes	0	2	1	1	1								1		45.817	45.817	2	0.034995	13800	20190902_JH_WT_Ubi_2	47.288	15.94	0	0	0	0	0	0	0	0	0	0			3318	489	2922	9407	9901	9901	183;184			1
MIQDGKGDVTITNDGATILK	GlyGly (K)	2203.1154	0.11544705	913	sp|P50991|TCPD_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1			34.786	34.786	3	0.0014448	8541	20190902_JH_MUT_Ubi_3	73.688	38.597	4548600	0	937330	1169100	0	0	1212100	1230100	0	0			3319	913	2923	9408;9409;9410;9411	9902;9903;9904;9905	9904		878		4
MITAAYVPLPTYHNLFPDSMTATQLLVPSR	2 Oxidation (M)	3378.6992	0.69922024	1294	sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN	yes	no	0	0	0	2	0		1	1			1	1		1	51.229	51.229	3	9.5302E-06	14954	20190902_JH_WT_Ubi_3	83.755	60.135	8446600	0	1933300	2091400	0	0	1377500	1071800	0	1972500			3320	1294	2924	9412;9413;9414;9415;9416	9906;9907;9908;9909;9910;9911	9911			807;808	6
MITAAYVPLPTYHNLFPDSMTATQLLVPSR	Oxidation (M)	3362.7043	0.70430562	1294	sp|Q14498-3|RBM39_HUMAN;sp|Q14498-2|RBM39_HUMAN;sp|Q14498|RBM39_HUMAN	yes	no	0	0	0	1	0			1							52.575	52.575	3	0.00026048	14865	20190821_JH_WT_Ubi	63.372	37.569	1804700	0	0	1804700	0	0	0	0	0	0			3321	1294	2924	9417	9912	9912			807;808	1
MKDTDSEEEIR	Oxidation (M);GlyGly (K)	1481.6304	0.63040162	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	1	1	1		1						1	1	18.149	18.149	3	1.6668E-06	2751	20190821_JH_MUT_Ubi	151.98	66.621	4365900	0	1337400	0	0	0	0	0	1375800	1652700			3322	504	2925	9418;9419;9420	9913;9914;9915	9913		495	292	3
MKKIQNISHNWNR	2 GlyGly (K);Deamidation (NQ)	1896.9377	0.93769787	1275	sp|Q14123|PDE1C_HUMAN;sp|Q14123-3|PDE1C_HUMAN	yes	no	0	1	2	0	2	1			1						34.222	34.222	3	0.018651	8127	20190821_JH_EV_Ubi	103.43	25.789	59741000	30779000	0	0	28961000	0	0	0	0	0			3323	1275	2926	9421;9422	9916;9917	9916	1025	1338;1339		2
MKKMGEMQLSSVTDSK	3 Oxidation (M);GlyGly (K)	1960.8904	0.89039784	1207	sp|Q13009-2|TIAM1_HUMAN;sp|Q13009|TIAM1_HUMAN	yes	no	0	0	1	3	2									1	21.572	21.572	4	0.020318	5459	20190902_JH_WT_Ubi_3	49.188	26.86	134280000	0	0	0	0	0	0	0	0	134280000			3324	1207	2927	9423	9918	9918		1274;1275	763;764;765	1
MKMAAPTANK	2 Oxidation (M);Deamidation (NQ)	1094.51	0.5100159	1589	sp|Q8IYB1|M21D2_HUMAN	yes	yes	0	1	0	2	1							1			3.2201	3.2201	3	0.035843	808	20190902_JH_MUT_Ubi_3	41.117	9.6953	0	0	0	0	0	0	0	0	0	0			3325	1589	2928	9424	9919	9919	517			1
MKMFKSQLTLMEHNYLIEYQK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	2920.3809	0.38092257	1626	sp|Q8N9V6|ANR53_HUMAN	yes	yes	0	2	2	1	2				1						37.317	37.317	3	0.032255	9200	20190902_JH_EV_Ubi_2	43.383	17.56	0	0	0	0	0	0	0	0	0	0			3326	1626	2929	9425	9920	9920	530;1143		947	1
MKTILSNQTVDIPENVDITLKGR	Oxidation (M);2 GlyGly (K)	2828.4702	0.47020658	757	sp|P32969|RL9_HUMAN	yes	yes	0	0	2	1	2		1								38.733	38.733	4	0.020593	8991	20190821_JH_MUT_Ubi	49.089	26.027	579200	0	579200	0	0	0	0	0	0	0			3327	757	2930	9426	9921	9921		728;729	475	0
MLAAKSADGSAPAGEGEGVTLQR	Oxidation (M);GlyGly (K)	2345.1281	0.128137	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	0	1	1	1	1	2	1		2	1	1	2	3	28.172	28.172	3	1.4839E-29	5703	20190821_JH_MUT_Ubi	165.53	108.76	1750800000	333250000	89872000	7704400	0	169740000	104990000	208980000	344240000	492070000			3328	1133	2931	9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439	9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937	9927		1130	706	16
MLAAKSADGSAPAGEGEGVTLQR	GlyGly (K)	2329.1332	0.13322238	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.198	29.198	3	8.3862E-171	6613	20190902_JH_MUT_Ubi_3	289.35	236.99	891610000	70497000	47107000	149340000	45354000	91389000	100830000	78104000	178870000	130120000			3329	1133	2931	9440;9441;9442;9443;9444;9445;9446;9447;9448	9938;9939;9940;9941;9942;9943;9944;9945;9946	9943		1130		9
MLAAKSADGSAPAGEGEGVTLQR	Oxidation (M);GlyGly (K);Deamidation (NQ)	2346.1122	0.11215258	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	1	1	1	1				1				1		28.277	28.277	3	3.49E-15	7795	20190902_JH_WT_Ubi_2	137.43	96.738	54196000	0	0	0	21641000	0	0	0	32555000	0			3330	1133	2931	9449;9450	9947;9948	9948	988	1130	706	2
MLAAKSADGSAPAGEGEGVTLQR	GlyGly (K);Deamidation (NQ)	2330.1172	0.11723796	1133	sp|Q01650|LAT1_HUMAN	yes	yes	0	1	1	0	1				1		1	1		1	29.544	29.544	3	4.0324E-15	6816	20190902_JH_MUT_Ubi_3	135.55	97.286	37653000	0	0	0	7693900	0	6797600	6078400	0	17083000			3331	1133	2931	9451;9452;9453;9454	9949;9950;9951;9952	9951	988	1130		4
MLDAEDIVNTARPDEK	Oxidation (M)	1831.8622	0.86219247	214	sp|O43707|ACTN4_HUMAN	yes	yes	0	0	0	1	1			1		1			1	1	34.104	34.104	3	0.0039036	9898	20190902_JH_WT_Ubi_2	89.507	49.441	27294000	0	0	5984400	0	2274100	0	0	9551900	9484100			3332	214	2932	9455;9456;9457;9458	9953;9954;9955;9956	9955			88	4
MLDAEDIVNTARPDEK	Unmodified	1815.8673	0.86727785	214	sp|O43707|ACTN4_HUMAN	yes	yes	0	0	0	0	1								1		36.679	36.679	3	0.03545	10723	20190902_JH_WT_Ubi_2	69.258	35.573	3927400	0	0	0	0	0	0	0	3927400	0			3333	214	2932	9459	9957	9957				1
MLDDNNHLIQCIMDSQNKGK	GlyGly (K);2 Deamidation (NQ)	2489.0985	0.09849313	1354	sp|Q15532-2|SSXT_HUMAN;sp|Q15532|SSXT_HUMAN	yes	no	0	2	1	0	1				1						24.181	24.181	3	0.020546	5099	20190902_JH_EV_Ubi_2	57.173	24.82	2014100	0	0	0	2014100	0	0	0	0	0			3334	1354	2933	9460	9958	9958	430;1048;1049	1400		1
MLDHKDLEAEIHPLK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	1959.9724	0.97241163	1931	sp|Q9H0X4-2|F234A_HUMAN;sp|Q9H0X4|F234A_HUMAN	yes	no	1	0	1	1	1								1	1	33.04	33.04	4	0.01573	9066	20190902_JH_WT_Ubi_3	51.03	24.739	14382000	0	0	0	0	0	0	0	7384000	6997700			3335	1931	2934	9461;9462	9959;9960	9960		1868;1869	1054	2
MLDLLEDFLEHEGYKYER	Oxidation (M);GlyGly (K)	2429.1209	0.12092636	1307	sp|Q14839|CHD4_HUMAN;sp|Q14839-2|CHD4_HUMAN	yes	no	0	0	1	1	1								1		47.612	47.612	4	0.025813	14351	20190902_JH_WT_Ubi_2	44.734	24.915	2237700	0	0	0	0	0	0	0	2237700	0			3336	1307	2935	9463	9961	9961		1368	818	1
MLGETCADCGTILLQDKQR	Oxidation (M);GlyGly (K)	2338.0716	0.071550098	228	sp|O60232|SSA27_HUMAN	yes	yes	0	0	1	1	1	1					1	1	1	1	32.906	32.906	3	7.7478E-09	9504	20190902_JH_WT_Ubi_2	127.3	69.801	7255000	852540	0	0	0	0	1023800	1023300	2053000	2302300			3337	228	2936	9464;9465;9466;9467;9468	9962;9963;9964;9965;9966	9965		205	96	5
MLGSPVDSVLFYAITTLHNLLLHQEGAK	Unmodified	3066.6212	0.62122791	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	0	0	0		1								39.939	39.939	4	0.035366	9416	20190821_JH_MUT_Ubi	33.976	10.912	3289000	0	3289000	0	0	0	0	0	0	0			3338	770	2937	9469	9967	9967				0
MLITILGTVKPNANR	Oxidation (M)	1655.9393	0.939261	605	sp|P17931|LEG3_HUMAN	yes	yes	0	0	0	1	1	1			1						36.151	36.151	3	0.00016477	8791	20190902_JH_EV_Ubi_2	118.76	79.097	9169200	5715900	0	0	3453400	0	0	0	0	0			3339	605	2938	9470;9471	9968;9969	9969			370	2
MLITILGTVKPNANR	Unmodified	1639.9443	0.94434638	605	sp|P17931|LEG3_HUMAN	yes	yes	0	0	0	0	1	1									39.221	39.221	3	0.0053615	9859	20190821_JH_EV_Ubi	96.067	43.572	2143300	2143300	0	0	0	0	0	0	0	0			3340	605	2938	9472	9970	9970				1
MLMGLDLLVFAHDHVGHGQSEGER	2 Oxidation (M)	2679.2534	0.25335429	1841	sp|Q99685|MGLL_HUMAN;sp|Q99685-2|MGLL_HUMAN	yes	no	0	0	0	2	0	1	1					1	1	1	38.976	38.976	4	0.00022879	11060	20190902_JH_WT_Ubi_3	81.357	50.4	46298000	12329000	10802000	0	0	0	0	7159500	8513900	7493700			3341	1841	2939	9473;9474;9475;9476;9477	9971;9972;9973;9974;9975;9976;9977	9977			1017;1018	7
MLPNFKLYNFIEIFFK	2 GlyGly (K);2 Deamidation (NQ)	2293.1493	0.14931336	1645	sp|Q8NDQ6-4|ZN540_HUMAN	yes	yes	0	2	2	0	1	1	1								39.673	39.673	3	0.014697	10023	20190821_JH_EV_Ubi	55.724	14.029	2980500	1295600	1685000	0	0	0	0	0	0	0			3342	1645	2940	9478;9479	9978;9979	9978	534;535	1645;1646		2
MLPTIIADNAGYDSADLVAQLR	Oxidation (M)	2362.1839	0.18386096	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	1	0									1	50.341	50.341	3	1.8019E-08	14745	20190902_JH_WT_Ubi_3	112.58	67.441	1513600	0	0	0	0	0	0	0	0	1513600			3343	1105	2941	9480	9980	9980			687	1
MLQDDDDTVHLPFEGGSLLQIPVKALK	Oxidation (M);GlyGly (K)	3108.5802	0.58015096	2262	sp|Q9Y6M7-5|S4A7_HUMAN;sp|Q9Y6M7-4|S4A7_HUMAN;sp|Q9Y6M7-3|S4A7_HUMAN;sp|Q9Y6M7-2|S4A7_HUMAN;sp|Q9Y6M7-9|S4A7_HUMAN;sp|Q9Y6M7-6|S4A7_HUMAN;sp|Q9Y6M7-13|S4A7_HUMAN;sp|Q9Y6M7-12|S4A7_HUMAN;sp|Q9Y6M7|S4A7_HUMAN;sp|Q9Y6M7-8|S4A7_HUMAN;sp|Q9Y6M7-7|S4A7_HUMAN	yes	no	0	0	1	1	1								1		49.109	49.109	4	0.0059973	14750	20190902_JH_WT_Ubi_2	48.685	10.102	897250	0	0	0	0	0	0	0	897250	0			3344	2262	2942	9481	9981	9981		2098	1163	1
MLSAVSQQVQCIQEALR	Oxidation (M);Deamidation (NQ)	1976.9659	0.96594604	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	1	0	1	0		1								43.577	43.577	2	0.013759	10933	20190821_JH_MUT_Ubi	54.199	12.719	703160	0	703160	0	0	0	0	0	0	0			3345	1284	2943	9482	9982	9982	1028;1029;1030		796	1
MLSHLLQALDYGAPPHGGIALGLDR	Oxidation (M)	2630.3639	0.36389102	1484	sp|Q6PI48|SYDM_HUMAN	yes	yes	0	0	0	1	0			1							44.493	44.493	4	0.0086638	11835	20190821_JH_WT_Ubi	48.597	19.323	4006900	0	0	4006900	0	0	0	0	0	0			3346	1484	2944	9483	9983	9983			905	1
MMCGAPSATQPATAETQHIADQVR	Acetyl (Protein N-term);2 Oxidation (M)	2644.168	0.16796968	401	sp|P04080|CYTB_HUMAN	yes	yes	1	0	0	2	0			1					1	1	34.622	34.622	3	0.0017848	10081	20190902_JH_WT_Ubi_2	66.76	46.863	37573000	0	0	12514000	0	0	0	0	14933000	10126000			3347	401	2945	9484;9485;9486	9984;9985;9986	9985			193;194	3
MMEDMNLNEDKKAPLR	Oxidation (M)	1949.9009	0.90090294	2029	sp|Q9NSV4-7|DIAP3_HUMAN;sp|Q9NSV4-4|DIAP3_HUMAN;sp|Q9NSV4|DIAP3_HUMAN	yes	no	0	0	0	1	2								1		27.372	27.372	4	0.03182	7416	20190902_JH_WT_Ubi_2	43.03	16.739	1962500	0	0	0	0	0	0	0	1962500	0			3348	2029	2946	9487	9987	9987			1090;1091	0
MMGHRPVLVLSQNTK	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	882	sp|P49368-2|TCPG_HUMAN;sp|P49368|TCPG_HUMAN	yes	no	1	0	0	2	1			1			1			1	27.445	27.445	3	0.012465	6375	20190902_JH_MUT_Ubi_2	97.631	56.253	50469000	0	0	21551000	0	0	8892700	0	0	20026000			3349	882	2947	9488;9489;9490	9988;9989;9990	9988			558;559	2
MMGHRPVLVLSQNTK	Acetyl (Protein N-term);Oxidation (M)	1767.9124	0.91239433	882	sp|P49368-2|TCPG_HUMAN;sp|P49368|TCPG_HUMAN	yes	no	1	0	0	1	1									1	30.887	30.887	3	0.013159	8363	20190902_JH_WT_Ubi_3	56.599	15.372	3757200	0	0	0	0	0	0	0	0	3757200			3350	882	2947	9491	9991	9991			558;559	1
MMGHRPVLVLSQNTK	Acetyl (Protein N-term)	1751.9175	0.9174797	882	sp|P49368-2|TCPG_HUMAN;sp|P49368|TCPG_HUMAN	yes	no	1	0	0	0	1									1	34.157	34.157	3	0.030091	9512	20190902_JH_WT_Ubi_3	53.946	20.754	2035300	0	0	0	0	0	0	0	0	2035300			3351	882	2947	9492	9992	9992				0
MMITSQDVLHSWAVPTLGLK	Oxidation (M)	2242.149	0.14899578	377	sp|P00403|COX2_HUMAN	yes	yes	0	0	0	1	0	1									48.214	48.214	3	7.5819E-05	13070	20190821_JH_EV_Ubi	94.387	57.749	5605100	5605100	0	0	0	0	0	0	0	0			3352	377	2948	9493	9993	9993			175;176	1
MMITSQDVLHSWAVPTLGLK	2 Oxidation (M)	2258.1439	0.14391041	377	sp|P00403|COX2_HUMAN	yes	yes	0	0	0	2	0					1					46.185	46.185	3	0.018662	11605	20190902_JH_EV_Ubi_3	48.824	20.244	9238000	0	0	0	0	9238000	0	0	0	0			3353	377	2948	9494	9994	9994			175;176	1
MNAKWDTGENPIYKSAVTTVVNPK	Oxidation (M);2 GlyGly (K)	2906.4233	0.42325639	429	sp|P05556|ITB1_HUMAN	yes	yes	0	0	2	1	2	1	1				1				35.862	35.862	4	1.6957E-10	8746	20190821_JH_EV_Ubi	122.16	94.253	9092400	4460600	1673700	0	0	0	2958100	0	0	0			3354	429	2949	9495;9496;9497	9995;9996;9997	9995		413;414;415	218	2
MNEEIKAVLQPHENIVPNK	GlyGly (K);4 Deamidation (NQ)	2320.1257	0.12567738	239	sp|O60315-2|ZEB2_HUMAN;sp|O60315|ZEB2_HUMAN	yes	no	0	4	1	0	1		1								32.573	32.573	3	0.025659	6764	20190821_JH_MUT_Ubi	51.265	26.727	0	0	0	0	0	0	0	0	0	0			3355	239	2950	9498	9998	9998	76;77;78;785	211		1
MNLPVASQLIISERK	Oxidation (M);GlyGly (K)	1827.9877	0.98766776	1447	sp|Q5TYW1-2|ZN658_HUMAN;sp|Q5TYW1|ZN658_HUMAN	yes	no	0	0	1	1	1	1		1							39.336	39.336	3	0.0093086	9921	20190821_JH_EV_Ubi	69.258	6.0723	14257000	3125900	0	11131000	0	0	0	0	0	0			3356	1447	2951	9499;9500	9999;10000	9999		1464	886	2
MPLHTIIPLLQELTK	Oxidation (M)	1762.0063	0.0062779369	1325	sp|Q15061|WDR43_HUMAN	yes	yes	0	0	0	1	0			1							48.159	48.159	3	0.037196	13323	20190821_JH_WT_Ubi	47.037	15.949	1651400	0	0	1651400	0	0	0	0	0	0			3357	1325	2952	9501	10001	10001				1
MPLYGLHLWLPK	Oxidation (M)	1482.8057	0.80572764	395	sp|P03905|NU4M_HUMAN	yes	yes	0	0	0	1	0			1							43.561	43.561	3	0.00043406	11424	20190821_JH_WT_Ubi	120.45	73.746	4414200	0	0	4414200	0	0	0	0	0	0			3358	395	2953	9502	10002	10002			186	1
MPNVPNTQPAIMKPTEEHPAYTQIAK	2 Oxidation (M);GlyGly (K)	3051.4794	0.47939106	173	sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN	yes	no	0	0	1	2	1						1			1	30.043	30.043	4	0.0090433	7380	20190902_JH_MUT_Ubi_2	44.254	28.14	3123700	0	0	0	0	0	1281100	0	0	1842600			3359	173	2954	9503;9504	10003;10004	10003		147	73;74	2
MQAIKCVVVGDGAVGK	Acetyl (Protein N-term);GlyGly (K)	1786.907	0.9069746	1075;565	sp|P63000-2|RAC1_HUMAN;sp|P63000|RAC1_HUMAN;sp|P60763|RAC3_HUMAN;sp|P15153|RAC2_HUMAN	no	no	1	0	1	0	1						1				44.464	44.464	2	0.00016883	12858	20190902_JH_MUT_Ubi_2	108.17	64.565	352700	0	0	0	0	0	352700	0	0	0			3360	1075;565	2955	9505	10005	10005		556		1
MQEPLLGAEGPDYDTFPEKPPPSPGDR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	3111.4131	0.41314521	2117	sp|Q9UGQ3-2|GTR6_HUMAN;sp|Q9UGQ3|GTR6_HUMAN	yes	no	1	0	1	1	1		1						1	1	45.013	45.013	3	3.8993E-05	13040	20190902_JH_WT_Ubi_3	79.426	59.547	3790000	0	549360	0	0	0	0	0	1735700	1504900			3361	2117	2956	9506;9507;9508	10006;10007;10008	10008		1988	1120	3
MQEVVANLQYDDGSGMKR	Oxidation (M);GlyGly (K)	2169.9783	0.97830164	1374	sp|Q16531|DDB1_HUMAN;sp|Q16531-2|DDB1_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	30.364	30.364	3	7.7628E-05	6457	20190821_JH_WT_Ubi	104.44	67.267	36723000	2135700	1852700	8616000	2220400	2600800	2549100	3375200	6734000	6639500			3362	1374	2957	9509;9510;9511;9512;9513;9514;9515;9516;9517	10009;10010;10011;10012;10013;10014;10015;10016;10017	10015		1414	852;853	9
MQEVVANLQYDDGSGMKR	2 Oxidation (M);GlyGly (K)	2185.9732	0.97321626	1374	sp|Q16531|DDB1_HUMAN;sp|Q16531-2|DDB1_HUMAN	yes	no	0	0	1	2	1			1		1	1		1	1	28.198	28.198	3	1.1747E-20	5782	20190821_JH_WT_Ubi	167.35	115.09	35288000	0	0	7007200	0	4687500	5392000	0	9843700	8357200			3363	1374	2957	9518;9519;9520;9521;9522	10018;10019;10020;10021;10022	10020		1414	852;853	5
MQEVVANLQYDDGSGMKR	GlyGly (K)	2153.9834	0.98338702	1374	sp|Q16531|DDB1_HUMAN;sp|Q16531-2|DDB1_HUMAN	yes	no	0	0	1	0	1			1			1				32.349	32.349	3	0.0017121	7101	20190821_JH_WT_Ubi	79.027	20.142	4990200	0	0	3807700	0	0	1182500	0	0	0			3364	1374	2957	9523;9524	10023;10024	10024		1414		2
MQIFVKTLTGK	Oxidation (M);GlyGly (K)	1394.7592	0.75917137	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	1	1	1	1	1			1	1	1	1	30.248	30.248	3	7.4407E-05	6945	20190902_JH_MUT_Ubi_3	144.55	80.429	67186000	2707300	6108800	8389100	0	0	16581000	12084000	11479000	9837800			3365	1074	2958	9525;9526;9527;9528;9529;9530;9531	10025;10026;10027;10028;10029;10030;10031	10028		1054;1055	659	7
MQIFVKTLTGK	GlyGly (K)	1378.7643	0.76425675	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1		1		34.159	34.159	3	1.6299E-06	7561	20190821_JH_MUT_Ubi	150.46	99.652	28235000	2302700	5888500	0	1363100	1172200	11341000	0	6167500	0			3366	1074	2958	9532;9533;9534;9535;9536;9537	10032;10033;10034;10035;10036;10037	10035		1054;1055		6
MQIFVKTLTGKTITLEVEPSDTIENVK	Oxidation (M);2 GlyGly (K)	3277.7116	0.71155906	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	2	1	2		1	1							43.452	43.452	4	0.0028015	10852	20190821_JH_MUT_Ubi	54.521	16.587	13756000	0	2410400	11345000	0	0	0	0	0	0			3367	1074	2959	9538;9539	10038;10039	10038		1054;1055;1056	659	2
MQIFVKTLTGKTITLEVEPSDTIENVK	2 GlyGly (K)	3261.7166	0.71664444	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	2	0	2		1	1							46.374	46.374	4	8.4142E-05	12536	20190821_JH_WT_Ubi	84.948	38.444	7579000	0	2948900	4630100	0	0	0	0	0	0			3368	1074	2959	9540;9541	10040;10041	10041		1054;1055;1056		2
MQNDSILKSELGNQSPSTSSR	Oxidation (M);GlyGly (K);Deamidation (NQ)	2409.1078	0.10779549	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN	yes	no	0	1	1	1	1	1									33.418	33.418	3	0.0037249	7739	20190821_JH_EV_Ubi	75.064	40.415	883820	883820	0	0	0	0	0	0	0	0			3369	1430	2960	9542	10042	10042	453;1069	1448	879	1
MQNDSILKSELGNQSPSTSSR	Oxidation (M);GlyGly (K)	2408.1238	0.1237799	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN	yes	no	0	0	1	1	1			1		1			1		29.744	29.744	3	8.5801E-06	6246	20190821_JH_WT_Ubi	95.591	63.696	11770000	0	0	4250400	0	2117100	0	0	5402100	0			3370	1430	2960	9543;9544;9545	10043;10044;10045	10044		1448	879	3
MQNDSILKSELGNQSPSTSSR	GlyGly (K)	2392.1289	0.12886528	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN	yes	no	0	0	1	0	1		1								31.348	31.348	3	1.5979E-06	6356	20190821_JH_MUT_Ubi	100.59	53.887	860280	0	860280	0	0	0	0	0	0	0			3371	1430	2960	9546	10046;10047	10047		1448		2
MQNHGYENPTYKYLEQMQI	2 Oxidation (M);GlyGly (K)	2532.105	0.10495872	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	0	1	2	1		1	1			1	1	1	1	34.806	34.806	3	3.6486E-09	8535	20190902_JH_MUT_Ubi_3	127.2	98.33	16654000	0	1483600	3099600	0	0	2844400	2128400	3396900	3701700			3372	1168	2961	9547;9548;9549;9550;9551;9552	10048;10049;10050;10051;10052;10053;10054	10050		1159	727;729	7
MQNHGYENPTYKYLEQMQI	Oxidation (M);GlyGly (K)	2516.11	0.11004409	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	0	1	1	1			1			1				37.774	37.774	3	0.0071401	10117	20190821_JH_WT_Ubi	64.537	22.155	3069800	0	0	1925100	0	0	1144700	0	0	0			3373	1168	2961	9553;9554	10055;10056	10056		1159	727;729	2
MQNHGYENPTYKYLEQMQI	GlyGly (K)	2500.1151	0.11512947	1168	sp|Q06481-5|APLP2_HUMAN;sp|Q06481-4|APLP2_HUMAN;sp|Q06481-2|APLP2_HUMAN;sp|Q06481-3|APLP2_HUMAN;sp|Q06481-6|APLP2_HUMAN;sp|Q06481|APLP2_HUMAN	yes	no	0	0	1	0	1			1							40.977	40.977	3	0.0055173	10331	20190821_JH_WT_Ubi	65.107	18.486	1606000	0	0	1606000	0	0	0	0	0	0			3374	1168	2961	9555	10057	10057		1159		1
MQVDQEEPHVEEQQQQTPAENK	Oxidation (M)	2637.1613	0.16128762	767	sp|P34932|HSP74_HUMAN	yes	yes	0	0	0	1	0			1					1		24.129	24.129	3	4.8126E-22	6382	20190902_JH_WT_Ubi_2	151.58	111.93	5642800	0	0	2016000	0	0	0	0	3626800	0			3375	767	2962	9556;9557	10058;10059	10059			480	2
MQVDQEEPHVEEQQQQTPAENK	Deamidation (NQ)	2622.1504	0.15038858	767	sp|P34932|HSP74_HUMAN	yes	yes	0	1	0	0	0			1							26.071	26.071	3	2.4284E-11	5160	20190821_JH_WT_Ubi	133.93	96.432	2509900	0	0	2509900	0	0	0	0	0	0			3376	767	2962	9558	10060;10061	10060	895;896			2
MQVGGDGVKVPGIDATTK	GlyGly (K)	1885.9568	0.95676156	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			32.949	32.949	3	0.0056383	8062	20190902_JH_MUT_Ubi_3	67.646	29.485	759570	0	0	0	0	0	0	759570	0	0			3377	1190	2963	9559	10062	10062		1224;1225		1
MQYAPNTQVEILPQGHESPIFK	Oxidation (M)	2542.2526	0.25260923	807	sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN	yes	no	0	0	0	1	0		1	1			1		1	1	39.057	39.057	3	1.5937E-11	9581	20190821_JH_WT_Ubi	129.06	86.075	41921000	0	1075300	15526000	0	0	1697800	0	11118000	12503000			3378	807	2964	9560;9561;9562;9563;9564	10063;10064;10065;10066;10067	10065			514	4
MREDYDSVEQDGDEPGPQR	Oxidation (M)	2237.9131	0.91311843	2246	sp|Q9Y5S9-2|RBM8A_HUMAN;sp|Q9Y5S9|RBM8A_HUMAN	yes	no	0	0	0	1	1								1		25.381	25.381	3	7.4273E-05	6783	20190902_JH_WT_Ubi_2	108.25	80.089	3531200	0	0	0	0	0	0	0	3531200	0			3379	2246	2965	9565	10068	10068			1159	1
MSASQLEALCPQVINAALALAAK	Oxidation (M)	2385.2396	0.2396017	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	0	1	0	1			1	1					54.092	54.092	3	3.7079E-23	14471	20190821_JH_EV_Ubi	158.02	123.74	14406000	9849900	0	0	1305200	3251200	0	0	0	0			3380	769	2966	9566;9567;9568	10069;10070;10071	10069			481	3
MSASQLEALCPQVINAALALAAK	Unmodified	2369.2447	0.24468708	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	0	0	0	1	1								54.882	54.882	3	4.0634E-10	14614	20190821_JH_EV_Ubi	122.64	91.361	10460000	7689000	2771000	0	0	0	0	0	0	0			3381	769	2966	9569;9570	10072;10073	10072				2
MSASQLEALCPQVINAALALAAKPQSK	Oxidation (M)	2825.4779	0.4779345	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	0	1	1	1									50.314	50.314	3	0.00021265	13677	20190821_JH_EV_Ubi	80.082	61.835	1697900	1697900	0	0	0	0	0	0	0	0			3382	769	2967	9571	10074	10074			481	1
MSASQLEALCPQVINAALALAAKPQSK	Unmodified	2809.483	0.48301987	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	0	0	1	1									52.21	52.21	3	0.012764	14082	20190821_JH_EV_Ubi	55.394	30.749	1069900	1069900	0	0	0	0	0	0	0	0			3383	769	2967	9572	10075	10075				1
MSENKDKNGK	Oxidation (M);3 GlyGly (K);Deamidation (NQ)	1508.6525	0.65253405	524	sp|P11234|RALB_HUMAN;sp|P11234-3|RALB_HUMAN;sp|P11234-2|RALB_HUMAN	yes	no	0	1	3	1	2				1						23.246	23.246	2	0.036135	4916	20190902_JH_EV_Ubi_2	41.876	7.1553	0	0	0	0	0	0	0	0	0	0			3384	524	2968	9573	10076	10076	203			1
MSNQGSKYVNKEIQNAVNGVK	Acetyl (Protein N-term);2 GlyGly (K)	2577.2605	0.26054816	516	sp|P10909-4|CLUS_HUMAN	yes	yes	1	0	2	0	2	1									49.945	49.945	3	0.0076286	13575	20190821_JH_EV_Ubi	55.031	18.824	1555800	1555800	0	0	0	0	0	0	0	0			3385	516	2969	9574	10077	10077		508;509		1
MSPDEGQEELEEVQAELKK	Oxidation (M);GlyGly (K)	2318.0584	0.05838568	1984	sp|Q9HC07-2|TM165_HUMAN;sp|Q9HC07|TM165_HUMAN	yes	no	0	0	1	1	1	1	1		1				1		38.421	38.421	3	1.6693E-86	9495	20190821_JH_EV_Ubi	232.73	177.07	20978000	7798100	5614000	0	5475700	0	0	0	2090000	0			3386	1984	2970	9575;9576;9577;9578	10078;10079;10080;10081	10078		1907;1908	1076	4
MSQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);Oxidation (M)	2550.1353	0.13531537	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	0	0	1	1	1									40.25	40.25	3	0.00028758	10275	20190821_JH_EV_Ubi	75.215	24.126	437110	437110	0	0	0	0	0	0	0	0			3387	463	2971	9579	10082	10082			267	1
MSQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);Deamidation (NQ)	2535.1244	0.12441633	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	1	0	0	1					1					39.91	39.91	3	6.1378E-23	10005	20190902_JH_EV_Ubi_3	162.81	108.58	0	0	0	0	0	0	0	0	0	0			3388	463	2971	9580	10083	10083	173;838			1
MSQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term)	2534.1404	0.14040075	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	0	0	0	1					1					42.913	42.913	3	3.5819E-07	10888	20190902_JH_EV_Ubi_3	111.62	71.716	309200	0	0	0	0	309200	0	0	0	0			3389	463	2971	9581	10084	10084				0
MSSFGDFVALSDVCDVPTAK	Oxidation (M)	2160.9708	0.97075665	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	1	0			1							48.013	48.013	2	0.0010437	13237	20190821_JH_WT_Ubi	100.11	68.767	0	0	0	0	0	0	0	0	0	0			3390	746	2972	9582	10085	10085			463	1
MSVQPTVSLGGFEITPPVVLR	Oxidation (M)	2242.2031	0.20313984	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	1	0		1	2	1		1	1	1	1	52.766	52.766	2;3	6.6347E-169	14935	20190821_JH_WT_Ubi	279.91	236.52	107840000	0	16728000	50145000	285420	0	11290000	9344000	7173400	12877000			3391	438	2973	9583;9584;9585;9586;9587;9588;9589;9590	10086;10087;10088;10089;10090;10091;10092;10093;10094	10092			238	9
MSVQPTVSLGGFEITPPVVLR	Unmodified	2226.2082	0.20822522	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	53.655	53.655	3	7.2115E-16	15263	20190821_JH_WT_Ubi	140.8	98.116	33591000	0	12245000	10221000	0	0	4457200	3126400	1769300	1772400			3392	438	2973	9591;9592;9593;9594;9595;9596	10095;10096;10097;10098;10099;10100	10098				6
MTQIMFETFNTPAMYVAIQAVLSLYASGR	3 Oxidation (M)	3300.5869	0.5868926	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	3	0								1		57.577	57.577	3	0.00069542	16759	20190902_JH_WT_Ubi_2	55.819	6.4498	811740	0	0	0	0	0	0	0	811740	0			3393	1000;1087	2974	9597	10101	10101			621;622;623	1
MTTSHQPQDR	Acetyl (Protein N-term);Oxidation (M)	1257.5408	0.54079876	1848	sp|Q99808|S29A1_HUMAN	yes	yes	1	0	0	1	0						1				11.282	11.282	3	0.031987	2607	20190902_JH_MUT_Ubi_2	53.756	14.452	25326000	0	0	0	0	0	25326000	0	0	0			3394	1848	2975	9598	10102	10102			1021	1
MVAAATNNLCEAANAAVQGHASQEK	Oxidation (M)	2571.1806	0.18058328	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	1	0								1		31.995	31.995	3	0.0040417	9087	20190902_JH_WT_Ubi_2	56.48	23.172	1904900	0	0	0	0	0	0	0	1904900	0			3395	2230	2976	9599	10103	10103			1150	1
MVDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	3745.7516	0.75164556	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	1	0	1	1	1	2	1	1	1	1	1	2	1		44.162	44.162	3	1.5748E-40	11249	20190821_JH_MUT_Ubi	158.47	135.44	136980000	32375000	18729000	4252200	14127000	15068000	25179000	24448000	2801400	0			3396	2171	2977	9600;9601;9602;9603;9604;9605;9606;9607;9608;9609	10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114	10108		2023;2024	1134	11
MVDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	Acetyl (Protein N-term);GlyGly (K)	3729.7567	0.75673094	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	1	0	1	0	1	1	1				1	1			46.713	46.713	3	4.4641E-13	12739	20190821_JH_EV_Ubi	105.58	85.363	32784000	7134100	11733000	0	0	0	6795300	7120800	0	0			3397	2171	2977	9610;9611;9612;9613	10115;10116;10117;10118	10115		2023;2024		4
MVEAAKGAAAHPDSEEQQQR	Oxidation (M);GlyGly (K)	2282.0346	0.034570966	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	1	1	1					1					18.289	18.289	3	0.0047302	3771	20190902_JH_EV_Ubi_3	66.606	30.577	398730	0	0	0	0	398730	0	0	0	0			3398	2230	2978	9614	10119	10119		2074	1151	1
MVFSNNDEGLINK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1611.7087	0.70865195	2150	sp|Q9UKC9-2|FBXL2_HUMAN;sp|Q9UKC9|FBXL2_HUMAN	yes	no	0	2	1	1	0				1						23.225	23.225	3	0.034956	4923	20190902_JH_EV_Ubi_2	40.767	8.3287	4821700	0	0	0	4821700	0	0	0	0	0			3399	2150	2979	9615	10120	10120	686;687			1
MVINHLEKLFVTNDAATILR	Oxidation (M);GlyGly (K)	2427.2944	0.29441447	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN	yes	no	0	0	1	1	1		1	1			1	1	1	1	42.929	42.929	4	0.00034076	12416	20190902_JH_WT_Ubi_3	82.01	62.953	13930000	0	974170	4675800	0	0	2671800	808950	2141100	2658200			3400	912	2980	9616;9617;9618;9619;9620;9621	10121;10122;10123;10124;10125;10126	10126		877	575	6
MVLAAAGGVEHQQLLDLAQK	Unmodified	2091.1147	0.11465919	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0	1	1	1							39.77	39.77	3	0.005574	10098	20190821_JH_EV_Ubi	60.489	32.277	12865000	749810	1120400	10995000	0	0	0	0	0	0			3401	744	2981	9622;9623;9624	10127;10128;10129;10130	10127				4
MVLAAAGGVEHQQLLDLAQK	Oxidation (M)	2107.1096	0.10957381	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	1	0								1	1	37.194	37.194	3	0.00030107	10986	20190902_JH_WT_Ubi_2	84.195	46.167	13772000	0	0	0	0	0	0	0	7455700	6316300			3402	744	2981	9625;9626	10131;10132;10133	10131			462	3
MVNPTVFFDIAVDGEPLGR	Acetyl (Protein N-term);Oxidation (M)	2134.0405	0.040491191	1072	sp|P62937|PPIA_HUMAN	yes	yes	1	0	0	1	0					1	1			1	59.365	59.365	3	0.0019856	13921	20190902_JH_EV_Ubi_3	70.615	38.968	2954100	0	0	0	0	1374400	873700	0	0	706080			3403	1072	2982	9627;9628;9629	10134;10135;10136;10137	10134			657	4
MVPSSPAVEKQVPVEPGPDPELR	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2629.3058	0.30576701	823	sp|P41440|S19A1_HUMAN;sp|P41440-3|S19A1_HUMAN	yes	no	1	0	1	1	1	1	1	1	1	1		1	1	1	40.769	40.769	3	2.6005E-09	10211	20190902_JH_EV_Ubi_2	118.23	89.337	110320000	16185000	6754800	14270000	21651000	14334000	0	8913900	14030000	14178000			3404	823	2983	9630;9631;9632;9633;9634;9635;9636;9637	10138;10139;10140;10141;10142;10143;10144;10145;10146;10147	10139		795	524	10
MVPSSPAVEKQVPVEPGPDPELR	Acetyl (Protein N-term);GlyGly (K)	2613.3109	0.31085239	823	sp|P41440|S19A1_HUMAN;sp|P41440-3|S19A1_HUMAN	yes	no	1	0	1	0	1				1		1				43.314	43.314	3	0.0059387	12473	20190902_JH_MUT_Ubi_2	54.15	23.94	2923100	0	0	0	1142900	0	1780200	0	0	0			3405	823	2983	9638;9639	10148;10149	10149		795		2
MVQQLGKAEAAALTETAK	Oxidation (M);GlyGly (K)	1989.0201	0.0200901	187	sp|O15439|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	31.444	31.444	3	1.1942E-14	6491	20190821_JH_MUT_Ubi	152.32	108.02	74107000	9277400	4582500	7950300	5338000	7097800	5909300	6636500	13482000	13834000			3406	187	2984	9640;9641;9642;9643;9644;9645;9646;9647;9648	10150;10151;10152;10153;10154;10155;10156;10157;10158	10153		168	79	9
MVQQLGKAEAAALTETAK	GlyGly (K)	1973.0252	0.025175478	187	sp|O15439|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	33.253	33.253	3	1.3597E-14	7206	20190821_JH_MUT_Ubi	149.52	113.86	41469000	4072100	3707000	5766700	2115600	2883100	4990100	4757000	6458800	6718700			3407	187	2984	9649;9650;9651;9652;9653;9654;9655;9656;9657	10159;10160;10161;10162;10163;10164;10165;10166;10167	10162		168		9
MVQQLGKAEAAALTETAK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1990.0041	0.004105685	187	sp|O15439|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	1	1	1	1								1		33.051	33.051	3	0.010156	9447	20190902_JH_WT_Ubi_2	76.761	38.424	2270400	0	0	0	0	0	0	0	2270400	0			3408	187	2984	9658	10168	10168	774	168	79	1
MVSSVMKMPEDESTPEK	3 Oxidation (M);GlyGly (K)	2085.8905	0.89045741	795	sp|P37235|HPCL1_HUMAN;sp|P84074|HPCA_HUMAN;sp|P61601|NCALD_HUMAN	yes	no	0	0	1	3	1		1	1	1	1	1	1	1	1	20.984	20.984	3	7.3756E-05	4551	20190902_JH_MUT_Ubi_2	106.6	69.675	13936000	0	623640	801490	673420	1698100	1874100	2694900	4009100	1561600			3409	795	2985	9659;9660;9661;9662;9663;9664;9665;9666	10169;10170;10171;10172;10173;10174;10175;10176;10177;10178	10173		774	505;506;507	10
MVSSVMKMPEDESTPEK	2 Oxidation (M);GlyGly (K)	2069.8955	0.89554279	795	sp|P37235|HPCL1_HUMAN;sp|P84074|HPCA_HUMAN;sp|P61601|NCALD_HUMAN	yes	no	0	0	1	2	1							1			22.248	22.248	3	0.016284	4747	20190902_JH_MUT_Ubi_3	50.077	23.306	900240	0	0	0	0	0	0	900240	0	0			3410	795	2985	9667	10179	10179		774	505;506;507	1
MVVNEGSDGGQSVYHVHLHVLGGR	Unmodified	2546.2448	0.24483851	893	sp|P49773|HINT1_HUMAN	yes	yes	0	0	0	0	0		2				1	1			32.041	32.041	3;4	0.00050674	6767	20190821_JH_MUT_Ubi	70.987	38.281	19952000	0	9282100	0	0	0	1353300	9316600	0	0			3411	893	2986	9668;9669;9670;9671	10180;10181;10182;10183	10180				4
MVVNEGSDGGQSVYHVHLHVLGGR	Oxidation (M)	2562.2398	0.23975313	893	sp|P49773|HINT1_HUMAN	yes	yes	0	0	0	1	0							1	1		16.552	16.552	3	1.6077E-06	8493	20190902_JH_WT_Ubi_2	93.255	56.143	14634000	0	0	0	0	0	0	1422600	13212000	0			3412	893	2986	9672;9673	10184;10185	10185			565	2
MYEEFLSKVSILESLDK	GlyGly (K)	2144.0711	0.071122618	513	sp|P10644-2|KAP0_HUMAN;sp|P10644|KAP0_HUMAN	yes	no	0	0	1	0	1		1								50.719	50.719	3	0.0023505	13436	20190821_JH_MUT_Ubi	98.573	62.381	0	0	0	0	0	0	0	0	0	0			3413	513	2987	9674	10186	10186		506		1
MYFLTAHHCGMGTASTAASIVVYWNYQNSTCR	2 Oxidation (M)	3728.6269	0.62687671	10	CON__P15636	yes	yes	0	0	0	2	0			1							41.353	41.353	4	0.00065825	10513	20190821_JH_WT_Ubi	59.263	37.023	11250000	0	0	11250000	0	0	0	0	0	0		+	3414	10	2988	9675	10187	10187			19;20	1
MYFLTAHHCGMGTASTAASIVVYWNYQNSTCR	Oxidation (M)	3712.632	0.63196208	10	CON__P15636	yes	yes	0	0	0	1	0			1							43.29	43.29	4	0.0004824	11269	20190821_JH_WT_Ubi	54.675	38.394	3084400	0	0	3084400	0	0	0	0	0	0		+	3415	10	2988	9676	10188;10189	10188			19;20	2
MYTAIPQSGSPFPGSVQDPGLHVWR	Acetyl (Protein N-term);Oxidation (M)	2784.333	0.33298482	807	sp|P40121-2|CAPG_HUMAN;sp|P40121|CAPG_HUMAN	yes	no	1	0	0	1	0			1					1	1	49.576	49.576	3	5.7311E-10	13822	20190821_JH_WT_Ubi	101.62	57.926	23362000	0	0	11522000	0	0	0	0	4325500	7514300			3416	807	2989	9677;9678;9679	10190;10191;10192	10190			515	3
NAAYYSPHGHILVLAGFGNLR	Unmodified	2269.1756	0.17561996	1905	sp|Q9BY44-2|EIF2A_HUMAN;sp|Q9BY44-4|EIF2A_HUMAN;sp|Q9BY44-3|EIF2A_HUMAN;sp|Q9BY44|EIF2A_HUMAN	yes	no	0	0	0	0	0			1					1		39.71	39.71	4	0.0016982	9828	20190821_JH_WT_Ubi	66.201	35.256	9818600	0	0	6854000	0	0	0	0	2964600	0			3417	1905	2990	9680;9681	10193;10194	10193				2
NADGFIDLEEYIGDMYSHDGNTDEPEWVK	Oxidation (M)	3374.4197	0.41974673	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-15|CALU_HUMAN	yes	no	0	0	0	1	0								1		52.213	52.213	3	0.00016602	15550	20190902_JH_WT_Ubi_2	70.504	53.428	1253900	0	0	0	0	0	0	0	1253900	0			3418	225	2991	9682	10195;10196	10195			94	2
NADMSEEMQQDSVECATQALEK	2 Oxidation (M)	2545.0254	0.025447346	1080	sp|P63167|DYL1_HUMAN	yes	yes	0	0	0	2	0								1	1	34.762	34.762	3	8.6713E-06	10075	20190902_JH_WT_Ubi_2	89.816	58.336	1830600	0	0	0	0	0	0	0	1830600	0			3419	1080	2992	9683;9684	10197;10198	10197			663;664	2
NAESAIEALKEYEPEMGK	2 GlyGly (K);Deamidation (NQ)	2237.0158	0.015792583	1742	sp|Q93084-4|AT2A3_HUMAN;sp|Q93084-2|AT2A3_HUMAN;sp|Q93084-3|AT2A3_HUMAN;sp|Q93084-7|AT2A3_HUMAN;sp|Q93084|AT2A3_HUMAN;sp|Q93084-6|AT2A3_HUMAN;sp|Q93084-5|AT2A3_HUMAN	yes	no	0	1	2	0	1								1		27.916	27.916	4	0.035808	7629	20190902_JH_WT_Ubi_2	44.294	20.283	1369500	0	0	0	0	0	0	0	1369500	0			3420	1742	2993	9685	10199	10199	565			0
NAEVTGTMSQDTEVDMKEVELNELEPEK	2 Oxidation (M);GlyGly (K)	3310.4705	0.47046167	462	sp|P08195|4F2_HUMAN	yes	yes	0	0	1	2	1	1	1		1	1		1			35.914	35.914	3	1.0199E-39	8947	20190902_JH_MUT_Ubi_3	160.12	142.4	16019000	4918500	1626200	0	2905300	3029900	0	3539500	0	0			3421	462	2994	9686;9687;9688;9689;9690	10200;10201;10202;10203;10204;10205;10206;10207	10207		466;472	265;266	8
NAEVTGTMSQDTEVDMKEVELNELEPEK	Oxidation (M);GlyGly (K)	3294.4755	0.47554705	462	sp|P08195|4F2_HUMAN	yes	yes	0	0	1	1	1		1								38.212	38.212	3	0.024966	8823	20190821_JH_MUT_Ubi	40.145	16.9	1190900	0	1190900	0	0	0	0	0	0	0			3422	462	2994	9691	10208	10208		466;472	265;266	1
NAEVTGTMSQDTEVDMKEVELNELEPEK	GlyGly (K)	3278.4806	0.48063243	462	sp|P08195|4F2_HUMAN	yes	yes	0	0	1	0	1		1								41.49	41.49	3	0.00012156	10082	20190821_JH_MUT_Ubi	73.934	46.297	2457200	0	2457200	0	0	0	0	0	0	0			3423	462	2994	9692	10209	10209		466;472		1
NAFACFDEEATGTIQEDYLR	Unmodified	2349.0219	0.021940594	162	sp|P19105|ML12A_HUMAN;sp|O14950|ML12B_HUMAN	yes	no	0	0	0	0	0			1							46.666	46.666	2	0.0045356	12673	20190821_JH_WT_Ubi	66.436	13.941	6220300	0	0	6220300	0	0	0	0	0	0			3424	162	2995	9693	10210	10210				1
NAFYIGSYQQCINEAQR	Unmodified	2060.9374	0.9374231	143	sp|O14579|COPE_HUMAN;sp|O14579-2|COPE_HUMAN;sp|O14579-3|COPE_HUMAN	yes	no	0	0	0	0	0								1		39.399	39.399	2	9.0291E-66	11623	20190902_JH_WT_Ubi_2	227.92	165.46	2265900	0	0	0	0	0	0	0	2265900	0			3425	143	2996	9694	10211	10211				1
NAGNEQDLGIQYKALKPEVDK	GlyGly (K)	2443.2343	0.23431663	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN	yes	no	0	0	1	0	2	1	1		1			1	1	1	31.645	31.645	4	0.0025708	8573	20190902_JH_WT_Ubi_3	64.5	15.531	41935000	5143100	4153700	0	4914000	0	0	8649500	9280700	9793500			3426	769	2997	9695;9696;9697;9698;9699;9700	10212;10213;10214;10215;10216;10217	10217		749;750;751		6
NAHSTAIAGLTFLHR	Unmodified	1607.8532	0.85322319	1660	sp|Q8NI36|WDR36_HUMAN	yes	yes	0	0	0	0	0		1								32.973	32.973	3	0.004721	6944	20190821_JH_MUT_Ubi	74.296	43.468	1108300	0	1108300	0	0	0	0	0	0	0			3427	1660	2998	9701	10218	10218				1
NAIHTFVQSGSHLAAR	Unmodified	1707.8805	0.88050057	398	sp|P04040|CATA_HUMAN	yes	yes	0	0	0	0	0								1		27.383	27.383	3	0.012313	7431	20190902_JH_WT_Ubi_2	59.884	24.847	2720100	0	0	0	0	0	0	0	2720100	0			3428	398	2999	9702	10219	10219				1
NAKGLSNESVNLLK	2 GlyGly (K);2 Deamidation (NQ)	1715.869	0.86899241	2095	sp|Q9P2K8-3|E2AK4_HUMAN;sp|Q9P2K8-2|E2AK4_HUMAN;sp|Q9P2K8|E2AK4_HUMAN	yes	no	0	2	2	0	1				1	1					27.416	27.416	3	0.0054631	6140	20190902_JH_EV_Ubi_2	74.78	31.75	8449500	0	0	0	5884200	2565400	0	0	0	0			3429	2095	3000	9703;9704	10220;10221	10220	667;668	1969;1970		2
NAKSSGNSSSSGSGSGSTSAGSSSPGAR	GlyGly (K);Deamidation (NQ)	2530.0764	0.076372018	1196	sp|Q12797-6|ASPH_HUMAN;sp|Q12797-11|ASPH_HUMAN;sp|Q12797-2|ASPH_HUMAN;sp|Q12797|ASPH_HUMAN;sp|Q12797-7|ASPH_HUMAN	yes	no	0	1	1	0	1		1	1	1	1					13.21	13.21	3	3.1409E-09	2647	20190821_JH_WT_Ubi	103.57	82.727	1095000	0	128560	365640	228510	372290	0	0	0	0			3430	1196	3001	9705;9706;9707;9708	10222;10223;10224;10225;10226;10227	10227	393	1262		6
NAKSSGNSSSSGSGSGSTSAGSSSPGAR	GlyGly (K)	2529.0924	0.092356433	1196	sp|Q12797-6|ASPH_HUMAN;sp|Q12797-11|ASPH_HUMAN;sp|Q12797-2|ASPH_HUMAN;sp|Q12797|ASPH_HUMAN;sp|Q12797-7|ASPH_HUMAN	yes	no	0	0	1	0	1		1	1		1					12.167	12.167	3	4.4742E-07	2276	20190821_JH_WT_Ubi	92.901	65.223	1590000	0	257930	1332100	0	0	0	0	0	0			3431	1196	3001	9709;9710;9711	10228;10229;10230	10230		1262		3
NALVSHLDGTTPVCEDIGR	Unmodified	2052.9899	0.9898526	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	34.929	34.929	3	0.00013281	9715	20190902_JH_WT_Ubi_3	93.495	56.902	22180000	0	0	8858500	0	0	0	0	6593700	6727300			3432	744	3002	9712;9713;9714	10231;10232;10233	10233				3
NAPAIIFIDELDAIAPK	Unmodified	1809.9877	0.98765098	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	0			1							55.342	55.342	3	2.165E-05	15894	20190821_JH_WT_Ubi	111.11	71.681	985270	0	0	985270	0	0	0	0	0	0			3433	974	3003	9715	10234;10235	10234				2
NAQLAQYNFILVVGEK	Unmodified	1805.9676	0.96758424	75	sp|A2RTX5-2|SYTC2_HUMAN;sp|P26639|SYTC_HUMAN;sp|P26639-2|SYTC_HUMAN;sp|A2RTX5|SYTC2_HUMAN	yes	no	0	0	0	0	0			1							47.843	47.843	2	4.6964E-25	13172	20190821_JH_WT_Ubi	171.26	121.79	2745200	0	0	2745200	0	0	0	0	0	0			3434	75	3004	9716	10236;10237	10237				2
NAQLNIELEAAHH	Unmodified	1458.7215	0.72154031	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0		1	1					1		31.318	31.318	3	0.0013881	6691	20190821_JH_WT_Ubi	102.05	53.607	31925000	0	2566700	20578000	0	0	0	0	8779800	0			3435	845	3005	9717;9718;9719	10238;10239;10240	10239				3
NAQMAQSPILLLGGAASTLLQNR	Oxidation (M)	2382.2689	0.268928	70	sp|A1L0T0|ILVBL_HUMAN	yes	yes	0	0	0	1	0									1	53.915	53.915	3	5.4502E-05	15559	20190902_JH_WT_Ubi_3	85.397	37.493	534930	0	0	0	0	0	0	0	0	534930			3436	70	3006	9720	10241	10241			41	1
NASTFEDVTQVSSAYQKTVPVEAVTSK	GlyGly (K)	2999.4724	0.47237465	1287	sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN	yes	no	0	0	1	0	1							1			39.839	39.839	3	0.0024619	10331	20190902_JH_MUT_Ubi_3	57.316	30.476	1237500	0	0	0	0	0	0	1237500	0	0			3437	1287	3007	9721	10242	10242		1345		1
NATVVWMKDNIR	2 Deamidation (NQ)	1447.7129	0.71294946	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-4|CD166_HUMAN	yes	no	0	2	0	0	1								1	1	23.301	23.301	3	0.02083	6126	20190902_JH_WT_Ubi_2	64.65	15.57	12569000	0	0	0	0	0	0	0	4955400	7613700			3438	1260	3008	9722;9723	10243;10244	10243	408;409			2
NCGQTVHDEVANKQTMEELK	Oxidation (M);GlyGly (K)	2460.1009	0.10093597	163	sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN	yes	no	0	0	1	1	1	1	1			1	1	1	1	1	23.117	23.117	3;4	5.0634E-05	5881	20190902_JH_WT_Ubi_3	100.01	68.868	33770000	8742900	3261500	0	0	6143800	7606900	2201700	2101700	3711800			3439	163	3009	9724;9725;9726;9727;9728;9729;9730	10245;10246;10247;10248;10249;10250;10251	10251		140	69	7
NCGQTVHDEVANKQTMEELK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2461.085	0.084951556	163	sp|O14964-2|HGS_HUMAN;sp|O14964|HGS_HUMAN	yes	no	0	1	1	1	1						1				26.278	26.278	3	0.026627	6058	20190902_JH_MUT_Ubi_2	50.493	24.882	0	0	0	0	0	0	0	0	0	0			3440	163	3009	9731	10252	10252	762	140	69	1
NCIIVPNGDNVFAAVKLYLMKK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2638.3499	0.34988044	97	sp|A8MVJ9|HPF1L_HUMAN	yes	yes	0	2	1	1	2						1				52.121	52.121	3	0.029944	14723	20190902_JH_MUT_Ubi_2	41.53	7.0542	3223800	0	0	0	0	0	3223800	0	0	0			3441	97	3010	9732	10253	10253	39;40	85	48	1
NCLVKNLEAVETLGSTSTICSDK	GlyGly (K)	2652.2735	0.27348061	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|P50993|AT1A2_HUMAN;sp|Q13733|AT1A4_HUMAN	yes	no	0	0	1	0	1				1						41.31	41.31	3	0.0059214	10418	20190902_JH_EV_Ubi_2	58.373	27.69	701020	0	0	0	701020	0	0	0	0	0			3442	418	3011	9733	10254	10254		397;398		1
NCNGVVMMFDITK	Oxidation (M);GlyGly (K)	1657.7262	0.72623304	1409	sp|Q3YEC7-4|RABL6_HUMAN;sp|Q3YEC7-5|RABL6_HUMAN;sp|Q3YEC7-6|RABL6_HUMAN;sp|Q3YEC7-3|RABL6_HUMAN;sp|Q3YEC7|RABL6_HUMAN;sp|Q3YEC7-2|RABL6_HUMAN	yes	no	0	0	1	1	0			1							21.616	21.616	3	0.019645	4010	20190821_JH_WT_Ubi	62.408	21.683	1809400	0	0	1809400	0	0	0	0	0	0			3443	1409	3012	9734	10255	10255		1430	864	0
NCPHIVVGTPGR	Unmodified	1305.6612	0.66118866	1264	sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN	yes	no	0	0	0	0	0								1		24.671	24.671	3	0.0079578	6558	20190902_JH_WT_Ubi_2	80.871	45.193	6366800	0	0	0	0	0	0	0	6366800	0			3444	1264	3013	9735	10256	10256				1
NCPHVVVGTPGR	Unmodified	1291.6455	0.6455386	105	sp|O00148-3|DX39A_HUMAN;sp|O00148-2|DX39A_HUMAN;sp|O00148|DX39A_HUMAN	yes	no	0	0	0	0	0								1		22.646	22.646	3	0.017365	5868	20190902_JH_WT_Ubi_2	66.538	19.945	2353800	0	0	0	0	0	0	0	2353800	0			3445	105	3014	9736	10257	10257				1
NCQTLVNLCSRSPCKNK	4 Deamidation (NQ)	2081.918	0.91800957	1155	sp|Q04721|NOTC2_HUMAN	yes	yes	0	4	0	0	2					1					29.389	29.389	3	0.021082	6728	20190902_JH_EV_Ubi_3	48.405	17.83	4186100	0	0	0	0	4186100	0	0	0	0			3446	1155	3015	9737	10258	10258	382;383;384;998			1
NCYPSPLNYYNFPK	GlyGly (K);Deamidation (NQ)	1890.8247	0.82468476	947	sp|P53582|MAP11_HUMAN	yes	yes	0	1	1	0	0						1				41.419	41.419	3	0.029915	11798	20190902_JH_MUT_Ubi_2	56.956	33.124	0	0	0	0	0	0	0	0	0	0			3447	947	3016	9738	10259	10259	318	907		1
NDANPETHAFVTSPEIVTALAIAGTLK	Unmodified	2779.4392	0.43922403	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0	1		1			1		1		53.286	53.286	3	3.7191E-07	15927	20190902_JH_WT_Ubi_2	94.276	64.832	13834000	1203200	0	8641400	0	0	474220	0	3514900	0			3448	1847	3017	9739;9740;9741;9742	10260;10261;10262;10263	10263				4
NDEELNKLLGK	GlyGly (K)	1385.7151	0.71505795	499	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q9BTM1-2|H2AJ_HUMAN	yes	no	0	0	1	0	1	1	1			1	1	1	1	1	32.628	32.628	3	0.001953	7496	20190821_JH_EV_Ubi	108.47	60.046	15547000	1476600	1529900	0	0	1999900	2649600	2227200	2933500	2730600			3449	499	3018	9743;9744;9745;9746;9747;9748;9749	10264;10265;10266;10267;10268;10269;10270	10264		486		7
NDEELNKLLGR	GlyGly (K)	1413.7212	0.72120596	416	sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	yes	no	0	0	1	0	1	1			1	1	1	1			33.613	33.613	2;3	0.0067861	8683	20190902_JH_MUT_Ubi_2	94.363	44.897	6871500	758880	0	0	1693500	1142000	1826100	1451000	0	0			3450	416	3019	9750;9751;9752;9753;9754	10271;10272;10273;10274;10275	10274		382		4
NDIASHPPVEGSYAPR	Unmodified	1708.8169	0.81689726	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	0	0								1		27.908	27.908	3	0.018311	7636	20190902_JH_WT_Ubi_2	53.777	16.414	4541900	0	0	0	0	0	0	0	4541900	0			3451	1518	3020	9755	10276	10276				1
NDKQLCLTASK	GlyGly (K);2 Deamidation (NQ)	1392.6555	0.65549416	1988	sp|Q9HCG8|CWC22_HUMAN	yes	yes	0	2	1	0	1								1		38.206	38.206	2	0.029268	11186	20190902_JH_WT_Ubi_2	55.112	9.9536	138950000	0	0	0	0	0	0	0	138950000	0			3452	1988	3021	9756	10277	10277	633;1260	1911		0
NDKSEEEQSSSSVK	GlyGly (K)	1666.7282	0.72820141	456	sp|P07910-4|HNRPC_HUMAN;sp|P07910-2|HNRPC_HUMAN;sp|P07910|HNRPC_HUMAN;sp|P07910-3|HNRPC_HUMAN	yes	no	0	0	1	0	1		1								12.723	12.723	3	0.027237	2012	20190821_JH_MUT_Ubi	58.626	10.018	356430	0	356430	0	0	0	0	0	0	0			3453	456	3022	9757	10278	10278		461		1
NDNVLAFLNKRTDFQ	3 Deamidation (NQ)	1796.8581	0.85809337	1812	sp|Q96RD9-5|FCRL5_HUMAN	yes	yes	0	3	0	0	2					1					46.334	46.334	2	0.036154	11688	20190902_JH_EV_Ubi_3	44.543	9.1286	0	0	0	0	0	0	0	0	0	0			3454	1812	3023	9758	10279	10279	580;581			1
NDPFTSDPFTKNPSLPSK	GlyGly (K)	2105.0065	0.006548526	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN;sp|Q9UBC2-3|EP15R_HUMAN	yes	no	0	0	1	0	1				1	1	1				36.945	36.945	3	0.00057737	9994	20190902_JH_MUT_Ubi_2	109.67	68.976	12766000	0	0	0	4366700	8399400	0	0	0	0			3455	2101	3024	9759;9760;9761	10280;10281;10282	10282		1976;1977		3
NDPGHHIIEDMWLGVTVASQGPAGR	Unmodified	2656.2816	0.28161795	685	sp|P26006|ITA3_HUMAN;sp|P26006-1|ITA3_HUMAN	yes	no	0	0	0	0	0			1							45.551	45.551	4	0.0005101	12266	20190821_JH_WT_Ubi	69.255	47.885	4494700	0	0	4494700	0	0	0	0	0	0			3456	685	3025	9762	10283;10284	10284				2
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	Unmodified	4384.1191	0.119116	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN	yes	no	0	0	0	0	0		1	1			1			1	45.547	45.547	5	0.00044499	11833	20190821_JH_MUT_Ubi	47.394	30.165	106650000	0	24803000	70697000	0	0	4403800	0	0	6744200			3457	1096	3026	9763;9764;9765;9766	10285;10286;10287;10288;10289	10285				5
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	Oxidation (M)	4400.114	0.11403062	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN	yes	no	0	0	0	1	0			1							43.647	43.647	5	0.0010653	11432	20190821_JH_WT_Ubi	40.271	26.506	112340000	0	0	112340000	0	0	0	0	0	0			3458	1096	3026	9767	10290	10290			677	1
NDQDTWDYTNPNLSGQGDPGSNPNK	Unmodified	2733.1539	0.15389406	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	0	0	0			1						1	36.78	36.78	3	4.1418E-64	10403	20190902_JH_WT_Ubi_3	203.53	164.34	4738800	0	0	1846900	0	0	0	0	0	2891900			3459	559	3027	9768;9769	10291;10292	10292				2
NDQDTWDYTNPNLSGQGDPGSNPNKR	GlyGly (K)	3003.2979	0.29793253	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1	1	1	32.596	32.596	3	6.5675E-79	7770	20190902_JH_EV_Ubi_3	218.95	171.98	16439000	0	3313900	3378200	0	1414200	2427800	2287600	1821300	1795600			3460	559	3028	9770;9771;9772;9773;9774;9775;9776	10293;10294;10295;10296;10297;10298;10299	10293		551		7
NDSHVLIELHK	Unmodified	1303.6884	0.68844927	1358	sp|Q15642-5|CIP4_HUMAN;sp|Q15642-4|CIP4_HUMAN;sp|Q15642-2|CIP4_HUMAN;sp|Q15642-3|CIP4_HUMAN;sp|Q15642|CIP4_HUMAN	yes	no	0	0	0	0	0								1		25.643	25.643	3	0.0064872	6856	20190902_JH_WT_Ubi_2	89.9	49.982	10324000	0	0	0	0	0	0	0	10324000	0			3461	1358	3029	9777	10300	10300				1
NECLEAGTLFQDPSFPAIPSALGFK	Unmodified	2708.3156	0.31560342	602	sp|P17655|CAN2_HUMAN	yes	yes	0	0	0	0	0			1							54.744	54.744	3	0.020431	15720	20190821_JH_WT_Ubi	40.177	18.977	5510300	0	0	5510300	0	0	0	0	0	0			3462	602	3030	9778	10301	10301				1
NEEDAAELVALAQAVNAR	Unmodified	1882.9385	0.93846896	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	0	0	0								1	1	49.485	49.485	2;3	4.2359E-06	14878	20190902_JH_WT_Ubi_2	115.66	59.013	3203900	0	0	0	0	0	0	0	1223700	1980200			3463	651	3031	9779;9780	10302;10303	10302				1
NEENTEPGAESSENADDPNKDTSENADGQSDENK	GlyGly (K)	3750.4757	0.4756943	841	sp|P43243|MATR3_HUMAN;sp|P43243-2|MATR3_HUMAN	yes	no	0	0	1	0	1	1				1					22.51	22.51	3	3.346E-18	4027	20190821_JH_EV_Ubi	117.66	97.246	1347500	420960	0	0	0	926500	0	0	0	0			3464	841	3032	9781;9782	10304;10305	10304		816;817		2
NEENTEPGAESSENADDPNKDTSENADGQSDENK	GlyGly (K);Deamidation (NQ)	3751.4597	0.45970988	841	sp|P43243|MATR3_HUMAN;sp|P43243-2|MATR3_HUMAN	yes	no	0	1	1	0	1									2	22.534	22.534	3	0.0063892	5758	20190902_JH_WT_Ubi_3	58.626	46.784	1067000	0	0	0	0	0	0	0	0	1067000			3465	841	3032	9783;9784	10306;10307	10306	298;299	816;817		2
NEEVQQLHMQLEIQK	4 Deamidation (NQ)	1869.8666	0.86660915	1854	sp|Q99996-5|AKAP9_HUMAN;sp|Q99996-3|AKAP9_HUMAN;sp|Q99996-2|AKAP9_HUMAN;sp|Q99996|AKAP9_HUMAN;sp|Q99996-6|AKAP9_HUMAN	yes	no	0	4	0	0	0								1		39.135	39.135	2	0.029754	11545	20190902_JH_WT_Ubi_2	94.465	33.775	5047600	0	0	0	0	0	0	0	5047600	0			3466	1854	3033	9785	10308	10308	594;1212;1213;1214			1
NEHVDYVDVGGAYVGPTQNR	Unmodified	2189.0138	0.013759169	638	sp|P21397|AOFA_HUMAN	yes	yes	0	0	0	0	0			1	1	1			1	2	33.656	33.656	2;3	7.302E-24	9292	20190902_JH_WT_Ubi_3	163.79	129.84	109040000	0	0	29532000	3029200	3268000	0	0	36874000	36338000			3467	638	3034	9786;9787;9788;9789;9790;9791	10309;10310;10311;10312;10313;10314;10315	10315				7
NEKGEIEQER	Unmodified	1230.584	0.58404378	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN;sp|Q01814-2|AT2B2_HUMAN;sp|Q01814|AT2B2_HUMAN;sp|Q01814-5|AT2B2_HUMAN;sp|Q16720|AT2B3_HUMAN;sp|Q01814-8|AT2B2_HUMAN;sp|Q16720-4|AT2B3_HUMAN;sp|Q16720-8|AT2B3_HUMAN;sp|Q01814-6|AT2B2_HUMAN;sp|Q16720-7|AT2B3_HUMAN;sp|Q16720-2|AT2B3_HUMAN;sp|Q16720-5|AT2B3_HUMAN;sp|Q01814-7|AT2B2_HUMAN;sp|Q16720-3|AT2B3_HUMAN;sp|Q01814-4|AT2B2_HUMAN;sp|Q16720-6|AT2B3_HUMAN;sp|Q01814-3|AT2B2_HUMAN	yes	no	0	0	0	0	1	1									15.229	15.229	3	0.030599	2596	20190821_JH_EV_Ubi	96.015	9.1168	373490	373490	0	0	0	0	0	0	0	0			3468	624	3035	9792	10316	10316				1
NEKGEIEQER	GlyGly (K)	1344.627	0.62697123	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN;sp|Q01814-2|AT2B2_HUMAN;sp|Q01814|AT2B2_HUMAN;sp|Q01814-5|AT2B2_HUMAN;sp|Q16720|AT2B3_HUMAN;sp|Q01814-8|AT2B2_HUMAN;sp|Q16720-4|AT2B3_HUMAN;sp|Q16720-8|AT2B3_HUMAN;sp|Q01814-6|AT2B2_HUMAN;sp|Q16720-7|AT2B3_HUMAN;sp|Q16720-2|AT2B3_HUMAN;sp|Q16720-5|AT2B3_HUMAN;sp|Q01814-7|AT2B2_HUMAN;sp|Q16720-3|AT2B3_HUMAN;sp|Q01814-4|AT2B2_HUMAN;sp|Q16720-6|AT2B3_HUMAN;sp|Q01814-3|AT2B2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		17.121	17.121	3	7.3694E-10	3618	20190902_JH_EV_Ubi_2	162.26	90.911	91626000	7155400	5397700	16734000	21277000	10315000	10849000	5063900	14833000	0			3469	624	3035	9793;9794;9795;9796;9797;9798;9799;9800	10317;10318;10319;10320;10321;10322;10323;10324	10318		601		8
NEKGEIEQER	GlyGly (K);Deamidation (NQ)	1345.611	0.61098681	624	sp|P20020|AT2B1_HUMAN;sp|P20020-4|AT2B1_HUMAN;sp|P20020-3|AT2B1_HUMAN;sp|P20020-5|AT2B1_HUMAN;sp|P20020-2|AT2B1_HUMAN;sp|P20020-6|AT2B1_HUMAN;sp|Q01814-2|AT2B2_HUMAN;sp|Q01814|AT2B2_HUMAN;sp|Q01814-5|AT2B2_HUMAN;sp|Q16720|AT2B3_HUMAN;sp|Q01814-8|AT2B2_HUMAN;sp|Q16720-4|AT2B3_HUMAN;sp|Q16720-8|AT2B3_HUMAN;sp|Q01814-6|AT2B2_HUMAN;sp|Q16720-7|AT2B3_HUMAN;sp|Q16720-2|AT2B3_HUMAN;sp|Q16720-5|AT2B3_HUMAN;sp|Q01814-7|AT2B2_HUMAN;sp|Q16720-3|AT2B3_HUMAN;sp|Q01814-4|AT2B2_HUMAN;sp|Q16720-6|AT2B3_HUMAN;sp|Q01814-3|AT2B2_HUMAN	yes	no	0	1	1	0	1									1	17.651	17.651	3	0.010753	4290	20190902_JH_WT_Ubi_3	113.69	64.186	1137200	0	0	0	0	0	0	0	0	1137200			3470	624	3035	9801	10325	10325	873	601		1
NEKGEVEQEK	GlyGly (K)	1302.6052	0.60517315	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN;sp|P23634-5|AT2B4_HUMAN;sp|P23634-4|AT2B4_HUMAN;sp|P23634-3|AT2B4_HUMAN;sp|P23634-2|AT2B4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1			11.343	11.343	3	0.00054596	2277	20190902_JH_MUT_Ubi_3	135.8	66.145	64358000	10534000	4823400	13770000	8647600	8109900	9716900	8756600	0	0			3471	668	3036	9802;9803;9804;9805;9806;9807;9808	10326;10327;10328;10329;10330;10331;10332	10331		647		7
NELVIRVQPNEAVYTK	Deamidation (NQ)	1872.9945	0.99452728	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	1	0	0	1									1	33.927	33.927	3	0.026909	9453	20190902_JH_WT_Ubi_3	56.872	27.886	1516900	0	0	0	0	0	0	0	0	1516900			3472	525	3037	9809	10333	10333	204			0
NENEEYNLSGTKK	GlyGly (K)	1638.7485	0.74854293	256	sp|O60674|JAK2_HUMAN	yes	yes	0	0	1	0	1				1						20.831	20.831	3	0.023905	4360	20190902_JH_EV_Ubi_2	67.456	20.471	967970	0	0	0	967970	0	0	0	0	0			3473	256	3038	9810	10334	10334		234;235		1
NENTFLDLTVQQIEHLNK	Unmodified	2155.0909	0.090946857	1392	sp|Q16851-2|UGPA_HUMAN;sp|Q16851|UGPA_HUMAN	yes	no	0	0	0	0	0			1							48.21	48.21	3	6.938E-10	13321	20190821_JH_WT_Ubi	134.81	70.563	5501300	0	0	5501300	0	0	0	0	0	0			3474	1392	3039	9811	10335	10335				1
NEQDKQEDPTNEK	GlyGly (K);3 Deamidation (NQ)	1690.6806	0.68058252	1403	sp|Q32MH5-2|F214A_HUMAN;sp|Q32MH5|F214A_HUMAN;sp|Q32MH5-3|F214A_HUMAN	yes	no	0	3	1	0	1									1	26.268	26.268	2	0.036648	6854	20190902_JH_WT_Ubi_3	42.743	16.624	0	0	0	0	0	0	0	0	0	0			3475	1403	3040	9812	10336	10336	443;444			1
NERPDGVLLTFGGQTALNCGVELTK	Deamidation (NQ)	2689.3381	0.33812978	701	sp|P27708|PYR1_HUMAN	yes	yes	0	1	0	0	1		1								45.057	45.057	3	0.029147	11486	20190821_JH_MUT_Ubi	47.807	11.815	0	0	0	0	0	0	0	0	0	0			3476	701	3041	9813	10337	10337	248			1
NESCSENYTTDFIYQLYSEEGK	Unmodified	2676.1174	0.11735712	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	0									1	50.18	50.18	3	0.0038538	14705	20190902_JH_WT_Ubi_3	60.464	44.367	608490	0	0	0	0	0	0	0	0	608490			3477	1136	3042	9814	10338	10338				1
NETMNMILKAK	GlyGly (K)	1405.7058	0.70575559	2148	sp|Q9UK32-2|KS6A6_HUMAN;sp|Q9UK32|KS6A6_HUMAN	yes	no	0	0	1	0	1					1					29.28	29.28	3	0.013284	6701	20190902_JH_EV_Ubi_3	82.261	13.905	999600	0	0	0	0	999600	0	0	0	0			3478	2148	3043	9815	10339	10339		2014		1
NEVDSTLTFR	Unmodified	1180.5724	0.57241646	643	sp|P21912|SDHB_HUMAN	yes	yes	0	0	0	0	0			1							33.607	33.607	2	0.0088088	7489	20190821_JH_WT_Ubi	86.189	41.986	1923300	0	0	1923300	0	0	0	0	0	0			3479	643	3044	9816	10340	10340				0
NEVLMVNIGSLSTGGR	Oxidation (M)	1661.8407	0.84066917	819	sp|Q2VIR3-2|IF2GL_HUMAN;sp|Q2VIR3|IF2GL_HUMAN;sp|P41091|IF2G_HUMAN	yes	no	0	0	0	1	0		1	1		1		1			41.444	41.444	2	0.0052409	10729	20190902_JH_MUT_Ubi_3	74.853	40.968	7866200	0	1425400	4561300	0	1123700	0	755840	0	0			3480	819	3045	9817;9818;9819;9820	10341;10342;10343;10344	10343			522	0
NEVPEEKLYK	GlyGly (K)	1361.6827	0.68269519	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN;sp|P23634-5|AT2B4_HUMAN;sp|P23634-4|AT2B4_HUMAN;sp|P23634-3|AT2B4_HUMAN;sp|P23634-2|AT2B4_HUMAN	yes	no	0	0	1	0	1	1			1						24.567	24.567	3	0.020256	4570	20190821_JH_EV_Ubi	74.533	14.431	4755100	1607500	0	0	3147500	0	0	0	0	0			3481	668	3046	9821;9822	10345;10346	10345		648		2
NFEDVAFDEK	Unmodified	1212.5299	0.52988294	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0					1					35.379	35.379	2	0.014938	8719	20190902_JH_EV_Ubi_3	114.89	63.107	2699300	0	0	0	0	2699300	0	0	0	0			3482	444	3047	9823	10347	10347				0
NFESLSEAFSVASAAAVLSHNR	Unmodified	2306.1291	0.12912328	414	sp|P04844-2|RPN2_HUMAN;sp|P04844|RPN2_HUMAN	yes	no	0	0	0	0	0	1									50.317	50.317	3	0.020847	13678	20190821_JH_EV_Ubi	44.089	13.115	782850	782850	0	0	0	0	0	0	0	0			3483	414	3048	9824	10348	10348				1
NFEVVDLVDVNTPDLMAPVSAKK	GlyGly (K)	2614.3313	0.33125348	1945	sp|Q9H3M7-2|TXNIP_HUMAN;sp|Q9H3M7|TXNIP_HUMAN	yes	no	0	0	1	0	1	1									49.47	49.47	3	0.018563	13457	20190821_JH_EV_Ubi	49.326	13.788	827690	827690	0	0	0	0	0	0	0	0			3484	1945	3049	9825	10349	10349		1880		1
NFEVVDLVDVNTPDLMAPVSAKK	Oxidation (M);GlyGly (K)	2630.3262	0.32616811	1945	sp|Q9H3M7-2|TXNIP_HUMAN;sp|Q9H3M7|TXNIP_HUMAN	yes	no	0	0	1	1	1		1	1		1	1	1	1	1	46.249	46.249	3	7.0168E-18	12227	20190902_JH_MUT_Ubi_3	146.97	115.46	20523000	0	3155100	5803400	0	571580	2169000	2524100	3123100	3176900			3485	1945	3049	9826;9827;9828;9829;9830;9831;9832	10350;10351;10352;10353;10354;10355;10356	10353		1880	1060	7
NFGSYVTHETK	Unmodified	1281.599	0.59896556	1080	sp|P63167|DYL1_HUMAN;sp|Q96FJ2|DYL2_HUMAN	yes	no	0	0	0	0	0									1	23.748	23.748	2	0.0046645	6113	20190902_JH_WT_Ubi_3	99.788	42.198	5961200	0	0	0	0	0	0	0	0	5961200			3486	1080	3050	9833	10357	10357				0
NFHIFYQLLEGGEEETLR	Unmodified	2194.0695	0.069483134	108	sp|O00159-2|MYO1C_HUMAN;sp|O00159-3|MYO1C_HUMAN;sp|O00159|MYO1C_HUMAN	yes	no	0	0	0	0	0			1					1		48.619	48.619	3	0.00024379	14638	20190902_JH_WT_Ubi_2	92.633	58.936	2569700	0	0	1078100	0	0	0	0	1491500	0			3487	108	3051	9834;9835	10358;10359	10359				2
NFHQYSVEGGKETLTPSELR	GlyGly (K)	2405.1612	0.16115169	1993	sp|Q9HCY8|S10AE_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	2	2	1	1	1	30.696	30.696	3;4	1.0053E-23	7510	20190902_JH_MUT_Ubi_2	163.96	118.07	218430000	24255000	18924000	22585000	13979000	25655000	60256000	20041000	23590000	9149200			3488	1993	3052	9836;9837;9838;9839;9840;9841;9842;9843;9844;9845;9846	10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370	10366		1914		11
NFHVFYQLLSGASEELLNK	Unmodified	2208.1215	0.1215187	219	sp|O43795-2|MYO1B_HUMAN;sp|O43795|MYO1B_HUMAN	yes	no	0	0	0	0	0			1					1	1	52.532	52.532	3	6.3521E-06	15663	20190902_JH_WT_Ubi_2	110.56	65.896	4151500	0	0	1506100	0	0	0	0	2000300	645100			3489	219	3053	9847;9848;9849	10371;10372;10373	10372				3
NFKVMIYQDEVK	Oxidation (M);GlyGly (K)	1642.8025	0.80249275	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	1	1		1	1			1	1	1	1	31.628	31.628	3	0.00024627	9020	20190902_JH_WT_Ubi_2	128.08	66.601	26645000	0	1977200	7284000	0	0	2057600	3269000	5651800	6405400			3490	1476	3054	9850;9851;9852;9853;9854;9855	10374;10375;10376;10377;10378;10379;10380	10378		1490	903	7
NFKVMIYQDEVK	GlyGly (K)	1626.8076	0.80757813	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	0	1		1	1			1			1	34.064	34.064	3	1.3294E-07	7684	20190821_JH_WT_Ubi	147.26	86.046	11996000	0	1770400	6037900	0	0	1693200	0	0	2494200			3491	1476	3054	9856;9857;9858;9859	10381;10382;10383;10384	10383		1490		4
NFLNAIATDIIHLHSQR	Unmodified	1962.0435	0.043543155	2034	sp|Q9NUQ8-2|ABCF3_HUMAN;sp|Q9NUQ8|ABCF3_HUMAN	yes	no	0	0	0	0	0			1					1		46.385	46.385	4	0.0086568	14018	20190902_JH_WT_Ubi_2	59.68	32.651	5223100	0	0	2908700	0	0	0	0	2314400	0			3492	2034	3055	9860;9861	10385;10386	10386				2
NFQAEKLLEEEEK	GlyGly (K)	1719.8315	0.83154427	1888	sp|Q9BW85|CCD94_HUMAN	yes	yes	0	0	1	0	1	1			1						49.969	49.969	3	0.020548	12120	20190902_JH_EV_Ubi_2	66.538	6.5624	690130	441880	0	0	248250	0	0	0	0	0			3493	1888	3056	9862;9863	10387;10388	10388		1829		2
NFQNIFPPSATLHLSNIPPSVSEEDLK	Unmodified	2993.5135	0.5134516	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0		1	1					2	1	47.65	47.65	3	4.0011E-05	13855	20190902_JH_WT_Ubi_3	81.65	49.102	8377700	0	817270	3194700	0	0	0	0	2141800	2223900			3494	690	3057	9864;9865;9866;9867;9868	10389;10390;10391;10392;10393;10394;10395;10396;10397	10396				9
NFSDNQLQEGKNVIGLQMGTNR	Oxidation (M);GlyGly (K)	2592.2351	0.23506169	796	sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN	yes	no	0	0	1	1	1						1				34.736	34.736	3	0.03011	9171	20190902_JH_MUT_Ubi_2	46.368	14.55	1366200	0	0	0	0	0	1366200	0	0	0			3495	796	3058	9869	10398	10398		775	508	1
NFSGTASTSLLGPPPGLLTPPVATELSQNAR	Unmodified	3092.6142	0.61422828	1604	sp|Q8N163-2|CCAR2_HUMAN;sp|Q8N163|CCAR2_HUMAN	yes	no	0	0	0	0	0						1			1	53.016	53.016	3	0.00013671	15362	20190902_JH_WT_Ubi_3	64.542	23.873	1714000	0	0	0	0	0	801060	0	0	912950			3496	1604	3059	9870;9871	10399;10400;10401	10401				3
NFVGPPHFQVICR	Unmodified	1569.7875	0.78745181	1522	sp|Q7L576|CYFP1_HUMAN;sp|Q7L576-3|CYFP1_HUMAN;sp|Q7L576-2|CYFP1_HUMAN	yes	no	0	0	0	0	0			1							36.134	36.134	3	0.029828	8410	20190821_JH_WT_Ubi	52.391	23.682	3617200	0	0	3617200	0	0	0	0	0	0			3497	1522	3060	9872	10402	10402				1
NFVVVMVTKPK	Oxidation (M);GlyGly (K)	1390.7643	0.76425675	964	sp|P54727|RD23B_HUMAN	yes	yes	0	0	1	1	1				1	1					29.941	29.941	3	0.00029902	6943	20190902_JH_EV_Ubi_2	136.5	90.902	3124200	0	0	0	1402100	1722100	0	0	0	0			3498	964	3061	9873;9874	10403;10404	10403		934;936	603	2
NFVVVMVTKPK	GlyGly (K)	1374.7693	0.76934213	964	sp|P54727|RD23B_HUMAN	yes	yes	0	0	1	0	1						1				33.065	33.065	3	0.030231	8493	20190902_JH_MUT_Ubi_2	63.944	25.949	865880	0	0	0	0	0	865880	0	0	0			3499	964	3061	9875	10405	10405		934;936		1
NFVVVMVTKTK	Oxidation (M);GlyGly (K)	1394.7592	0.75917137	963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN	yes	no	0	0	1	1	1	1	1	1							28.966	28.966	3	0.0024714	5515	20190821_JH_MUT_Ubi	108.31	79.356	8706000	1806200	1448700	5451200	0	0	0	0	0	0			3500	963	3062	9876;9877;9878	10406;10407;10408	10407		932	601	3
NFYGGNGIVGAQVPLGAGIALACK	Deamidation (NQ)	2347.1995	0.19945145	467	sp|P08559|ODPA_HUMAN;sp|P08559-4|ODPA_HUMAN;sp|P08559-2|ODPA_HUMAN	yes	no	0	1	0	0	0			1					1	1	51.745	51.745	3	1.8902E-16	14602	20190821_JH_WT_Ubi	136.85	97.933	6201000	0	0	3162400	0	0	0	0	1099200	1939400			3501	467	3063	9879;9880;9881	10409;10410;10411;10412	10409	174;175			4
NGEKMSINAEEVVVGDLVEVK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2389.1683	0.16827048	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	1	1	1	1						1	1			45.855	45.855	3	0.012933	12195	20190902_JH_MUT_Ubi_3	66.644	21.387	2696500	0	0	0	0	0	1532000	1164500	0	0			3502	418	3064	9882;9883	10413;10414	10414	147	399	214	2
NGFLNLALPFFGFSEPLAAPR	Deamidation (NQ)	2278.1786	0.17863965	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	1	0	0	0								1		61.747	61.747	3	3.4948E-08	17566	20190902_JH_WT_Ubi_2	116.29	90.784	1507500	0	0	0	0	0	0	0	1507500	0			3503	651	3065	9884	10415	10415	236			1
NGGHFVISIK	Deamidation (NQ)	1071.5713	0.57129425	647	sp|P22087|FBRL_HUMAN	yes	yes	0	1	0	0	0	1	1	1		1		1	1	1	34.648	34.648	3	0.0029575	7891	20190821_JH_WT_Ubi	117.71	68.283	40850000	4447900	2656500	10805000	0	4679300	0	2567000	8945300	6750000			3504	647	3066	9885;9886;9887;9888;9889;9890;9891	10416;10417;10418;10419;10420;10421;10422	10420	235			7
NGGHFVISIK	Unmodified	1070.5873	0.58727866	647	sp|P22087|FBRL_HUMAN	yes	yes	0	0	0	0	0			1					1	1	28.794	28.794	3	0.022319	7589	20190902_JH_WT_Ubi_3	65.278	21.47	9511100	0	0	3501100	0	0	0	0	2845700	3164300			3505	647	3066	9892;9893;9894	10423;10424;10425	10425				3
NGGLGHMNIALLSDLTK	Unmodified	1752.9193	0.91925384	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	0	0	0	0	1									43.894	43.894	3	0.017912	11657	20190821_JH_EV_Ubi	51.466	5.0581	636950	636950	0	0	0	0	0	0	0	0			3506	724	3067	9895	10426	10426				1
NGGLGHMNIALLSDLTK	Deamidation (NQ)	1753.9033	0.90326943	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	1	0	0	0			1			1			1	48.781	48.781	3	0.00018587	14436	20190902_JH_WT_Ubi_3	108.06	53.112	3754800	0	0	1200000	0	0	596620	0	0	1958200			3507	724	3067	9896;9897;9898	10427;10428;10429	10429	257			3
NGGLGHMNIALLSDLTK	Oxidation (M)	1768.9142	0.91416847	724	sp|P30048-2|PRDX3_HUMAN;sp|P30048|PRDX3_HUMAN	yes	no	0	0	0	1	0									1	38.703	38.703	3	0.016058	11063	20190902_JH_WT_Ubi_3	56.774	26.127	2110000	0	0	0	0	0	0	0	0	2110000			3508	724	3067	9899	10430	10430			453	1
NGHVGISFVPK	Unmodified	1153.6244	0.62439245	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1							1		28.605	28.605	3	0.00067946	7865	20190902_JH_WT_Ubi_2	119.03	57.249	8092700	3416100	0	0	0	0	0	0	4676600	0			3509	637	3068	9900;9901	10431;10432	10432				2
NGHVGISFVPK	Deamidation (NQ)	1154.6084	0.60840804	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	1	0	0	0	1	1	1	2	2	1	1	2	2	33.546	33.546	3	2.987E-06	9422	20190902_JH_WT_Ubi_3	150.04	98.607	173990000	13999000	4989600	20235000	18256000	20869000	10061000	9038800	44147000	32394000			3510	637	3068	9902;9903;9904;9905;9906;9907;9908;9909;9910;9911;9912;9913;9914	10433;10434;10435;10436;10437;10438;10439;10440;10441;10442;10443;10444;10445	10445	224			13
NGLLHGHFTLPFLK	Deamidation (NQ)	1593.8667	0.86674799	327	sp|O95163|ELP1_HUMAN	yes	yes	0	1	0	0	0		1					1	1		45.684	45.684	3	0.0010575	13884	20190902_JH_WT_Ubi_2	107.53	52.238	5608800	0	0	0	0	0	0	948790	4660000	0			3511	327	3069	9915;9916;9917	10446;10447;10448	10448	104			3
NGLLHGHFTLPFLK	Unmodified	1592.8827	0.8827324	327	sp|O95163|ELP1_HUMAN	yes	yes	0	0	0	0	0			1							41.076	41.076	3	0.024125	10405	20190821_JH_WT_Ubi	54.199	24.195	2324900	0	0	2324900	0	0	0	0	0	0			3512	327	3069	9918	10449	10449				1
NGLQSCPIKEDSFLQR	GlyGly (K)	2004.9687	0.96872323	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1	1					1	1			33.176	33.176	3	0.00071799	8522	20190902_JH_MUT_Ubi_2	96.707	67.216	7522700	3048100	0	0	0	0	3069800	1404800	0	0			3513	382	3070	9919;9920;9921	10450;10451;10452	10451		342		3
NGLQSCPIKEDSFLQR	GlyGly (K);Deamidation (NQ)	2005.9527	0.95273882	382	sp|P00533|EGFR_HUMAN	yes	yes	0	1	1	0	1	1	1		1	1	1	1		1	37.76	37.76	3	9.6746E-18	9388	20190821_JH_EV_Ubi	166.64	114.54	53236000	12063000	6025100	0	8080000	6872600	7311700	5533900	0	7349400			3514	382	3070	9922;9923;9924;9925;9926;9927;9928	10453;10454;10455;10456;10457;10458;10459	10453	121;810	342		7
NGLVKIKVAEDEAEAAAAAK	2 GlyGly (K);Deamidation (NQ)	2226.1492	0.14919002	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	2	0	2	2	1	1		1					38.162	38.162	3	3.117E-09	8943	20190821_JH_EV_Ubi	132.87	109.85	25681000	10616000	3934000	8330400	0	2800600	0	0	0	0			3515	462;463	3071	9929;9930;9931;9932;9933	10460;10461;10462;10463;10464	10460	172	468;469;470		5
NGPLEVAGAAVSAGHGLPAK	Unmodified	1814.9639	0.96389585	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	0	0	0								1	1	34.984	34.984	3	0.027513	10230	20190902_JH_WT_Ubi_2	42.118	23.522	5113800	0	0	0	0	0	0	0	2180100	2933800			3516	281	3072	9934;9935	10465;10466	10465				2
NGQGFALVYSITAQSTFNDLQDLR	Deamidation (NQ)	2658.2926	0.29255979	1061	sp|P62834|RAP1A_HUMAN;sp|P61224-3|RAP1B_HUMAN;sp|P61224|RAP1B_HUMAN;sp|A6NIZ1|RP1BL_HUMAN;sp|P61224-4|RAP1B_HUMAN	yes	no	0	1	0	0	0			1							57.284	57.284	3	0.00073752	16268	20190821_JH_WT_Ubi	101.16	61.148	0	0	0	0	0	0	0	0	0	0			3517	1061	3073	9936	10467	10467	342;965			1
NGSEADIDEGLYSR	Deamidation (NQ)	1525.6532	0.65324556	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	1	0	0	0									1	35.236	35.236	2	1.8931E-18	9853	20190902_JH_WT_Ubi_3	179.83	133.94	2959000	0	0	0	0	0	0	0	0	2959000			3518	651	3074	9937	10468	10468	237			0
NGSLLMVSDSERTTEGTSQQKVK	2 GlyGly (K);3 Deamidation (NQ)	2725.2712	0.271232	1477	sp|Q6P0N0-2|M18BP_HUMAN;sp|Q6P0N0|M18BP_HUMAN	yes	no	0	3	2	0	2			1							35.92	35.92	3	0.0020453	8313	20190821_JH_WT_Ubi	64.522	13.564	3113700	0	0	3113700	0	0	0	0	0	0			3519	1477	3075	9938	10469	10469	467;1085;1086	1492;1493		1
NGSMGSPVNQQPK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1474.6358	0.63582135	1576	sp|Q8IW50-3|F219A_HUMAN;sp|Q8IW50-7|F219A_HUMAN;sp|Q8IW50-2|F219A_HUMAN;sp|Q8IW50-5|F219A_HUMAN;sp|Q8IW50-6|F219A_HUMAN;sp|Q8IW50-4|F219A_HUMAN;sp|Q8IW50|F219A_HUMAN	yes	no	0	2	1	1	0			1							27.821	27.821	2	0.029679	5636	20190821_JH_WT_Ubi	55.064	12.589	0	0	0	0	0	0	0	0	0	0			3520	1576	3076	9939	10470	10470	515;1123	1575	932	1
NGTQVHGTITGVDVSMNTHLK	Oxidation (M)	2224.0906	0.090629281	1048	sp|P62314|SMD1_HUMAN	yes	yes	0	0	0	1	0	1			1	1					26.895	26.895	3	6.2366E-09	5386	20190821_JH_EV_Ubi	120.71	82.941	7841000	2435600	0	0	3288500	2116900	0	0	0	0			3521	1048	3077	9940;9941;9942	10471;10472;10473	10471			646	3
NGTQVHGTITGVDVSMNTHLK	Oxidation (M);Deamidation (NQ)	2225.0746	0.074644866	1048	sp|P62314|SMD1_HUMAN	yes	yes	0	1	0	1	0	1			1	1					29.917	29.917	3	6.1106E-36	6497	20190821_JH_EV_Ubi	173.19	115.22	18964000	6702600	0	0	4305200	7956600	0	0	0	0			3522	1048	3077	9943;9944;9945	10474;10475;10476	10474	337;964		646	3
NGTQVHGTITGVDVSMNTHLK	Unmodified	2208.0957	0.095714659	1048	sp|P62314|SMD1_HUMAN	yes	yes	0	0	0	0	0	1									30.3	30.3	3	0.010785	6513	20190821_JH_EV_Ubi	51.611	19.061	1173000	1173000	0	0	0	0	0	0	0	0			3523	1048	3077	9946	10477;10478	10477				2
NGTQVHGTITGVDVSMNTHLK	Deamidation (NQ)	2209.0797	0.079730244	1048	sp|P62314|SMD1_HUMAN	yes	yes	0	1	0	0	0	1	1				1				33.602	33.602	3	1.9275E-15	7889	20190821_JH_EV_Ubi	140.27	93.566	5452300	2629400	1574300	0	0	0	1248600	0	0	0			3524	1048	3077	9947;9948;9949	10479;10480;10481	10479	337;964			3
NGTTQPLVWLDQSSK	GlyGly (K);Deamidation (NQ)	1787.869	0.86899241	1489	sp|Q6Q4G3-4|AMPQ_HUMAN;sp|Q6Q4G3-3|AMPQ_HUMAN;sp|Q6Q4G3-2|AMPQ_HUMAN;sp|Q6Q4G3|AMPQ_HUMAN	yes	no	0	1	1	0	0		1	1	1					1	42.05	42.05	3	0.0056551	12117	20190902_JH_WT_Ubi_3	82.069	16.506	4285100	0	482470	1881900	446700	0	0	0	0	1474100			3525	1489	3078	9950;9951;9952;9953	10482;10483;10484;10485	10485	1088	1499		0
NHSIILSAPNPEGKIK	GlyGly (K)	1830.9952	0.99519598	756	sp|P32856-3|STX2_HUMAN;sp|P32856-2|STX2_HUMAN;sp|P32856|STX2_HUMAN	yes	no	0	0	1	0	1	1	1								28.789	28.789	3	0.005836	5981	20190821_JH_EV_Ubi	72.662	37.57	2301100	1623000	678170	0	0	0	0	0	0	0			3526	756	3079	9954;9955	10486;10487	10486		725		2
NHVQPYIPSILEALMVPTSQGFTEVR	Oxidation (M)	2941.5008	0.50077843	1830	sp|Q96TA1-2|NIBL1_HUMAN;sp|Q96TA1|NIBL1_HUMAN	yes	no	0	0	0	1	0			1							52.789	52.789	3	0.013718	14940	20190821_JH_WT_Ubi	45.679	20.778	2027600	0	0	2027600	0	0	0	0	0	0			3527	1830	3080	9956	10488	10488			1009	1
NHYEVLVLGGGSGGITMAAR	Oxidation (M)	2017.0051	0.005108738	2263	sp|Q9Y6N5|SQOR_HUMAN	yes	yes	0	0	0	1	0	1	1	1		1		1		1	36.114	36.114	3	1.2659E-23	8289	20190821_JH_MUT_Ubi	160.76	98.723	38759000	4795900	4407400	11209000	0	2942400	0	6106700	0	9298000			3528	2263	3081	9957;9958;9959;9960;9961;9962	10489;10490;10491;10492;10493;10494	10491			1164	6
NICEGGEEMDNKFGVEQPEGDEDLTK	Oxidation (M);GlyGly (K)	3069.2815	0.28153869	674	sp|P24928|RPB1_HUMAN;sp|P24928-2|RPB1_HUMAN	yes	no	0	0	1	1	1						1				32.949	32.949	3	8.0558E-20	8433	20190902_JH_MUT_Ubi_2	136.57	108.39	1487300	0	0	0	0	0	1487300	0	0	0			3529	674	3082	9963	10495	10495		655;657	417	1
NICKVVEVGSK	GlyGly (K)	1345.7024	0.70238478	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1		1	24.638	24.638	3	0.00079127	4789	20190821_JH_WT_Ubi	123.01	64.411	51957000	3077700	4333500	7361900	2739100	3283500	9523300	9521800	0	12117000			3530	556	3083	9964;9965;9966;9967;9968;9969;9970;9971	10496;10497;10498;10499;10500;10501;10502;10503	10502		547		8
NICPNSGFLR	Deamidation (NQ)	1177.555	0.55499226	2143	sp|Q9UII6|DS13B_HUMAN;sp|Q9UII6-4|DS13B_HUMAN	yes	no	0	1	0	0	0								1		34.672	34.672	3	0.037201	10028	20190902_JH_WT_Ubi_2	42.395	6.0773	0	0	0	0	0	0	0	0	0	0			3531	2143	3084	9972	10504	10504	682			1
NIDEHANEDVER	Unmodified	1439.6277	0.62769951	1009	sp|P61026|RAB10_HUMAN	yes	yes	0	0	0	0	0								1		20.749	20.749	3	0.019668	5200	20190902_JH_WT_Ubi_2	63.727	27.99	7612800	0	0	0	0	0	0	0	7612800	0			3532	1009	3085	9973	10505	10505				1
NIEDVIAQGIGK	Unmodified	1255.6772	0.67721588	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	0	0	0			1							42.523	42.523	2	0.034713	11038	20190821_JH_WT_Ubi	55.721	24.924	17590000	0	0	17590000	0	0	0	0	0	0			3533	427	3086	9974	10506	10506				0
NIEIDSPYEISR	Unmodified	1434.6991	0.69907354	413	sp|P04843|RPN1_HUMAN	yes	yes	0	0	0	0	0									1	37.886	37.886	2	0.014349	10764	20190902_JH_WT_Ubi_3	79.07	32.613	4551300	0	0	0	0	0	0	0	0	4551300			3534	413	3087	9975	10507	10507				1
NIFHLFHDVVPTYHK	Unmodified	1865.9577	0.95768826	198	sp|O43264-2|ZW10_HUMAN;sp|O43264|ZW10_HUMAN	yes	no	0	0	0	0	0		1	1							38.539	38.539	4	0.022279	9284	20190821_JH_WT_Ubi	49.265	23.618	13942000	0	2463000	11479000	0	0	0	0	0	0			3535	198	3088	9976;9977	10508;10509	10509				2
NIHESCMSQIGWNR	Oxidation (M)	1746.7566	0.75662197	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	0	0	1	0								1	1	25.784	25.784	3	0.010854	6664	20190902_JH_WT_Ubi_3	70.889	38.459	3546900	0	0	0	0	0	0	0	1842900	1704000			3536	525	3089	9978;9979	10510;10511	10511			316	2
NIHIFGLANVLHR	Unmodified	1502.847	0.8470156	1788	sp|Q96JH7|VCIP1_HUMAN	yes	yes	0	0	0	0	0			1					1		38.263	38.263	3	7.5979E-05	9254	20190821_JH_WT_Ubi	126.66	99.509	7449900	0	0	6380400	0	0	0	0	1069400	0			3537	1788	3090	9980;9981	10512;10513;10514	10512				3
NIHKLLDEVFFSEK	GlyGly (K)	1831.9468	0.9468488	684	sp|P25789|PSA4_HUMAN	yes	yes	0	0	1	0	1		1	1			1				41.825	41.825	3	1.9408E-15	10409	20190821_JH_MUT_Ubi	168.89	125.5	9475300	0	3411600	3275300	0	0	2788400	0	0	0			3538	684	3091	9982;9983;9984	10515;10516;10517	10515		670		3
NIHLHAHSLVGK	Unmodified	1324.7364	0.73640252	622	sp|P19838|NFKB1_HUMAN;sp|P19838-2|NFKB1_HUMAN	yes	no	0	0	0	0	0								1		20.039	20.039	3	0.033438	4994	20190902_JH_WT_Ubi_2	52.79	15.809	3903400	0	0	0	0	0	0	0	3903400	0			3539	622	3092	9985	10518	10518				1
NIHVCLGGLFVPEAYITATR	Unmodified	2230.1569	0.15685835	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	0		1								48.991	48.991	3	0.0014625	12854	20190821_JH_MUT_Ubi	71.842	27.255	2621600	0	2621600	0	0	0	0	0	0	0			3540	1284	3093	9986	10519	10519				1
NIIHGSDSVESAEK	Unmodified	1484.7107	0.71070086	573	sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1		1	1	22.381	22.381	3	1.9363E-15	5713	20190902_JH_WT_Ubi_3	168	108.73	107400000	5373100	0	19888000	4437500	8330400	1110600	0	41851000	26409000			3541	573	3094	9987;9988;9989;9990;9991;9992;9993	10520;10521;10522;10523;10524;10525;10526;10527	10527				8
NIIHGSDSVK	Unmodified	1068.5564	0.55637247	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN	yes	no	0	0	0	0	0			1							18.791	18.791	3	0.034737	3435	20190821_JH_WT_Ubi	55.401	28.798	12222000	0	0	12222000	0	0	0	0	0	0			3542	652	3095	9994	10528	10528				1
NIIHGSDSVKSAEK	GlyGly (K)	1597.806	0.80599822	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	18.85	18.85	3	2.7144E-09	2930	20190821_JH_MUT_Ubi	136.33	87.088	55165000	2191900	0	6924500	7031800	5001300	0	5020400	12289000	16706000			3543	652	3096	9995;9996;9997;9998;9999;10000;10001;10002;10003	10529;10530;10531;10532;10533;10534;10535;10536;10537	10532		628		9
NIIVFYGSQTGTAEEFANR	Unmodified	2116.0225	0.022532941	589	sp|P16435|NCPR_HUMAN	yes	yes	0	0	0	0	0								1		43.786	43.786	3	0.036856	13127	20190902_JH_WT_Ubi_2	61.757	23.664	591040	0	0	0	0	0	0	0	591040	0			3544	589	3097	10004	10538	10538				0
NILKQGIETPEDQNDLR	GlyGly (K)	2096.0498	0.049810324	1357	sp|Q15637-4|SF01_HUMAN;sp|Q15637-6|SF01_HUMAN;sp|Q15637-7|SF01_HUMAN;sp|Q15637-3|SF01_HUMAN;sp|Q15637-2|SF01_HUMAN;sp|Q15637|SF01_HUMAN;sp|Q15637-5|SF01_HUMAN	yes	no	0	0	1	0	1								1	1	32.108	32.108	3	0.0022133	9162	20190902_JH_WT_Ubi_2	79.346	48.113	2947300	0	0	0	0	0	0	0	1271000	1676300			3545	1357	3098	10005;10006	10539;10540	10539		1403		2
NINIGDISIKVPNLPSFK	GlyGly (K);2 Deamidation (NQ)	2084.1154	0.11537069	1711	sp|Q92572|AP3S1_HUMAN	yes	yes	0	2	1	0	1		1	1				1			46.436	46.436	3	0.015175	12120	20190821_JH_MUT_Ubi	62.861	12.782	34378000	0	4986700	23453000	0	0	0	5938000	0	0			3546	1711	3099	10007;10008;10009	10541;10542;10543	10541	558;559;560	1706		3
NINTISSELKK	2 GlyGly (K);2 Deamidation (NQ)	1475.7468	0.74675201	103	sp|C9J3I9|CE058_HUMAN	yes	yes	0	2	2	0	1					1					29.473	29.473	3	0.034018	6765	20190902_JH_EV_Ubi_3	58.274	15.189	1035400	0	0	0	0	1035400	0	0	0	0			3547	103	3100	10010	10544	10544	41;42			1
NIPPYFVALVPQEEELDDQK	Unmodified	2343.1634	0.1634431	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	0	0	0	0									1	51.692	51.692	3	0.024731	15070	20190902_JH_WT_Ubi_3	43.81	7.058	2507000	0	0	0	0	0	0	0	0	2507000			3548	541	3101	10011	10545	10545				1
NIQTDNNKSIGCFGSR	GlyGly (K)	1923.8857	0.88572188	1853	sp|Q99959-2|PKP2_HUMAN;sp|Q99959|PKP2_HUMAN	yes	no	0	0	1	0	1		1					1			26.699	26.699	3	0.00048613	4802	20190821_JH_MUT_Ubi	99.796	52.759	3705100	0	1449500	0	0	0	0	2255700	0	0			3549	1853	3102	10012;10013	10546;10547	10546		1810		2
NIQVSHQEFSKMK	Oxidation (M);GlyGly (K)	1704.8254	0.82535346	1692	sp|Q8WUM4|PDC6I_HUMAN;sp|Q8WUM4-2|PDC6I_HUMAN	yes	no	0	0	1	1	1							1			19.922	19.922	3	0.013868	4262	20190902_JH_MUT_Ubi_3	75.102	32.546	3688200	0	0	0	0	0	0	3688200	0	0			3550	1692	3103	10014	10548	10548		1683	968	1
NIRIVVMNNLLPRSVK	GlyGly (K);2 Deamidation (NQ)	1981.1143	0.11426526	73;1846	sp|Q99755-2|PI51A_HUMAN;sp|Q99755-4|PI51A_HUMAN;sp|Q99755-3|PI51A_HUMAN;sp|Q99755|PI51A_HUMAN;sp|A2A3N6|PIPSL_HUMAN	no	no	0	2	1	0	2		1								46.555	46.555	3	0.036512	11989	20190821_JH_MUT_Ubi	45.014	16.433	1189000	0	1189000	0	0	0	0	0	0	0			3551	1846;73	3104	10015	10549	10549	24;25			0
NITLNFGPQHPAAHGVLR	Unmodified	1941.0333	0.033312819	277	sp|O75306-2|NDUS2_HUMAN;sp|O75306|NDUS2_HUMAN	yes	no	0	0	0	0	0				1		1	1	1		32.07	32.07	3;4	2.4992E-05	8046	20190902_JH_MUT_Ubi_2	109.07	67.515	128610000	0	0	0	14408000	0	12797000	6708200	94694000	0			3552	277	3105	10016;10017;10018;10019	10550;10551;10552;10553	10551				4
NITVIFHPLLR	Unmodified	1321.787	0.7870411	1753	sp|Q96A65|EXOC4_HUMAN	yes	yes	0	0	0	0	0		1	1							41.097	41.097	3	0.0099465	10401	20190821_JH_WT_Ubi	80.916	63.705	7408800	0	0	7408800	0	0	0	0	0	0			3553	1753	3106	10020;10021	10554;10555;10556	10556				3
NITYLPAGQSVLLQLPQ	Deamidation (NQ)	1855.0091	0.0091147084	771	sp|P35232|PHB_HUMAN	yes	yes	0	1	0	0	0						1				55.34	55.34	2	0.025411	15216	20190902_JH_MUT_Ubi_2	62.528	10.361	349720	0	0	0	0	0	349720	0	0	0			3554	771	3107	10022	10557	10557	897;898			0
NIVSLLLSMLGHDEDNTR	Oxidation (M)	2042.0103	0.010253695	1717	sp|Q92616|GCN1_HUMAN	yes	yes	0	0	0	1	0		1	1							52.616	52.616	3	0.0024359	13951	20190821_JH_MUT_Ubi	73.296	47.43	1663200	0	435780	1227400	0	0	0	0	0	0			3555	1717	3108	10023;10024	10558;10559	10558			978	2
NKAKVAIGPAGNQQLR	Acetyl (Protein N-term);Deamidation (NQ)	1706.9428	0.94276648	47		yes	no	1	1	0	0	2			1							35.449	35.449	3	0.02507	8173	20190821_JH_WT_Ubi	41.621	12.318	12147000	0	0	12147000	0	0	0	0	0	0	+		3556	47	3109	10025	10560	10560	17			1
NKDQGTYEDYVEGLR	GlyGly (K)	1899.8599	0.85988429	999	sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN	yes	no	0	0	1	0	1	1									33.249	33.249	3	0.031126	7650	20190821_JH_EV_Ubi	53.008	25.359	801490	801490	0	0	0	0	0	0	0	0			3557	999	3110	10026	10561	10561				1
NKDQSEQETSDADQHVTSNASDSESSYR	GlyGly (K)	3228.3311	0.33114273	1204	sp|Q12959-4|DLG1_HUMAN;sp|Q12959-2|DLG1_HUMAN	yes	no	0	0	1	0	1		1							1	22.092	22.092	4	0.0071138	3458	20190821_JH_MUT_Ubi	47.175	37.356	2542000	0	656530	0	0	0	0	0	0	1885500			3558	1204	3111	10027;10028	10562;10563	10562		1271		2
NKDSLSQNLLFVMK	GlyGly (K);Deamidation (NQ)	1750.8924	0.89237039	2265	sp|Q9Y6X6-4|MYO16_HUMAN;sp|Q9Y6X6-3|MYO16_HUMAN;sp|Q9Y6X6-2|MYO16_HUMAN;sp|Q9Y6X6|MYO16_HUMAN	yes	no	0	1	1	0	1									1	49.147	49.147	2	0.028876	14393	20190902_JH_WT_Ubi_3	63.32	7.2772	0	0	0	0	0	0	0	0	0	0			3559	2265	3112	10029	10564	10564	709	2099		1
NKELADLKHVHGK	2 GlyGly (K);Deamidation (NQ)	1716.8907	0.89073091	1750	sp|Q96A19|C102A_HUMAN	yes	yes	0	1	2	0	2				1						47.07	47.07	2	0.036599	11761	20190902_JH_EV_Ubi_2	49.06	17.302	0	0	0	0	0	0	0	0	0	0			3560	1750	3113	10030	10565	10565	567			1
NKGGKYPVK	2 GlyGly (K);Deamidation (NQ)	1218.6357	0.63568542	1726	sp|Q92823-3|NRCAM_HUMAN;sp|Q92823-4|NRCAM_HUMAN;sp|Q92823-6|NRCAM_HUMAN;sp|Q92823-2|NRCAM_HUMAN;sp|Q92823|NRCAM_HUMAN;sp|Q92823-5|NRCAM_HUMAN	yes	no	0	1	2	0	2									1	43.032	43.032	2	0.029093	12516	20190902_JH_WT_Ubi_3	71.296	35.677	678270	0	0	0	0	0	0	0	0	678270			3561	1726	3114	10031	10566	10566	561	1719;1720		0
NKIMTAQYECYQKIMQDPIQQAEGVYCNR	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	3711.6314	0.63135296	1378	sp|Q16602|CALRL_HUMAN	yes	yes	0	3	1	1	2		1								40.033	40.033	3	0.031033	9472	20190821_JH_MUT_Ubi	42.661	20.46	0	0	0	0	0	0	0	0	0	0			3562	1378	3115	10032	10567	10567	1053;1054;1055		856	1
NKNNACGIANLASFPK	2 GlyGly (K);3 Deamidation (NQ)	1948.8949	0.89488959	840	sp|P43235|CATK_HUMAN	yes	yes	0	3	2	0	1	1									29.343	29.343	3	0.016005	6211	20190821_JH_EV_Ubi	54.09	18.999	2635100	2635100	0	0	0	0	0	0	0	0			3563	840	3116	10033	10568	10568	295;296;297	814;815		1
NKTEDLEATSEHFK	GlyGly (K)	1761.817	0.81695684	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	24.683	24.683	3	1.1863E-20	5302	20190902_JH_MUT_Ubi_3	177.93	101.06	125050000	10930000	9656700	16512000	4811000	10389000	19682000	18160000	16195000	18714000			3564	1882	3117	10034;10035;10036;10037;10038;10039;10040;10041;10042	10569;10570;10571;10572;10573;10574;10575;10576;10577	10574		1824;1825		9
NKTEDLEATSEHFKTTSQK	GlyGly (K)	2307.0979	0.097882729	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	1	0	2						1				22.888	22.888	4	0.021529	5102	20190902_JH_MUT_Ubi_2	47.64	7.8935	2483500	0	0	0	0	0	2483500	0	0	0			3565	1882	3118	10043	10578	10578		1824;1825;1826		1
NKTEVDIYNSDPLICR	GlyGly (K)	2049.979	0.97895357	1841	sp|Q99685|MGLL_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1			35.548	35.548	3	7.4285E-14	8088	20190821_JH_MUT_Ubi	155.37	69.369	28860000	4117600	6252500	0	2808100	0	8987500	6694400	0	0			3566	1841	3119	10044;10045;10046;10047;10048	10579;10580;10581;10582;10583	10581		1801		5
NKYEDEINKR	Unmodified	1307.647	0.64697839	3;6	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__Q8VED5;CON__Q6IFZ6;sp|P04264|K2C1_HUMAN;CON__P04264;sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000016045	no	no	0	0	0	0	2			1					1		18.68	18.68	3	0.024882	4707	20190902_JH_WT_Ubi_2	121.61	19.943	15173000	0	0	5052400	0	0	0	0	10121000	0		+	3567	3;6	3120	10049;10050	10584;10585	10585				2
NLASLGNQVDK	2 Deamidation (NQ)	1159.5721	0.57208211	1625	sp|Q8N988|ZN557_HUMAN;sp|Q8N988-2|ZN557_HUMAN	yes	no	0	2	0	0	0			1							26.565	26.565	2	0.036122	5268	20190821_JH_WT_Ubi	66.351	9.4353	2722700	0	0	2722700	0	0	0	0	0	0			3568	1625	3121	10051	10586	10586	528;529			0
NLATTVTEEILEK	Unmodified	1459.777	0.77698951	200	sp|O43390-4|HNRPR_HUMAN;sp|O43390-3|HNRPR_HUMAN;sp|O43390|HNRPR_HUMAN;sp|O43390-2|HNRPR_HUMAN	yes	no	0	0	0	0	0								1		45.755	45.755	2	0.018772	13790	20190902_JH_WT_Ubi_2	68.132	32.48	2034400	0	0	0	0	0	0	0	2034400	0			3569	200	3122	10052	10587	10587				0
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	1	1	1	1	1	1			1	1	32.029	32.029	3	0.00012603	8697	20190902_JH_WT_Ubi_3	125.84	74.826	368120000	10274000	3848000	99398000	11394000	9370100	0	0	119640000	114200000			3570	1097;1098;1515;1858	3123	10053;10054;10055;10056;10057;10058;10059	10588;10589;10590;10591;10592;10593;10594	10594				7
NLDSTTVAVHGEEIYCK	Unmodified	1934.9044	0.90439164	636	sp|P21291|CSRP1_HUMAN	yes	yes	0	0	0	0	0									1	31.479	31.479	3	0.0099988	8583	20190902_JH_WT_Ubi_3	60.209	11.387	5676100	0	0	0	0	0	0	0	0	5676100			3571	636	3124	10060	10595	10595				1
NLEAVETLGSTSTICSDKTGTLTQNR	GlyGly (K)	2909.4036	0.40364316	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|P50993|AT1A2_HUMAN;sp|Q13733|AT1A4_HUMAN	yes	no	0	0	1	0	1						1	1			36.329	36.329	3	5.2606E-34	9829	20190902_JH_MUT_Ubi_2	160.47	134.03	2150100	0	0	0	0	0	1096500	1053500	0	0			3572	418	3125	10061;10062	10596;10597;10598	10596		398		3
NLEEDDYLHKDTGETSMLK	Oxidation (M);GlyGly (K)	2367.0536	0.053634653	2127	sp|Q9UHE8|STEA1_HUMAN	yes	yes	0	0	1	1	1									1	28.773	28.773	3	0.0072628	7674	20190902_JH_WT_Ubi_3	64.298	28.994	2501400	0	0	0	0	0	0	0	0	2501400			3573	2127	3126	10063	10599	10599		1997	1122	1
NLFPGGFQVTTDTQK	GlyGly (K);2 Deamidation (NQ)	1767.8315	0.83154427	1462	sp|Q674R7-2|ATG9B_HUMAN;sp|Q674R7|ATG9B_HUMAN	yes	no	0	2	1	0	0			1							35.451	35.451	3	0.034999	8190	20190821_JH_WT_Ubi	51.211	11.186	4372000	0	0	4372000	0	0	0	0	0	0			3574	1462	3127	10064	10600	10600	463;1080			1
NLGHWLGMITLAK	Unmodified	1452.7911	0.7911402	81	sp|A5YKK6-3|CNOT1_HUMAN;sp|A5YKK6-2|CNOT1_HUMAN;sp|A5YKK6|CNOT1_HUMAN;sp|A5YKK6-4|CNOT1_HUMAN	yes	no	0	0	0	0	0			1							44.45	44.45	3	0.029243	11798	20190821_JH_WT_Ubi	52.891	26.138	3611000	0	0	3611000	0	0	0	0	0	0			3575	81	3128	10065	10601	10601				1
NLGIPLGQDAEEK	Unmodified	1382.7042	0.70415892	1475	sp|Q6NUK1|SCMC1_HUMAN	yes	yes	0	0	0	0	0									1	36.281	36.281	2	0.027572	10248	20190902_JH_WT_Ubi_3	72.434	21.368	0	0	0	0	0	0	0	0	0	0			3576	1475	3129	10066	10602	10602				1
NLGTALAELR	Unmodified	1056.5928	0.59275797	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0									1	37.604	37.604	2	0.024027	10676	20190902_JH_WT_Ubi_3	76.282	22.125	1648300	0	0	0	0	0	0	0	0	1648300			3577	2230	3130	10067	10603	10603				0
NLHQSGFSLSGAQIDDNIPR	Unmodified	2168.061	0.061043713	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	0	0			1					1		37.044	37.044	3	2.8584E-09	8744	20190821_JH_WT_Ubi	124.69	91.384	31170000	0	0	18405000	0	0	0	0	12765000	0			3578	1376	3131	10068;10069	10604;10605;10606	10604				3
NLHVVFTMNPSSEGLK	Oxidation (M)	1787.8876	0.88761936	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	1	0			1						1	32.757	32.757	3	3.1509E-05	7265	20190821_JH_WT_Ubi	114.21	51.831	11321000	0	0	6330400	0	0	0	0	0	4990900			3579	1284	3132	10070;10071	10607;10608	10607			797	1
NLLDEELQR	Unmodified	1128.5775	0.57750184	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0								1		36.446	36.446	2	0.00063418	10641	20190902_JH_WT_Ubi_2	105.1	20.358	0	0	0	0	0	0	0	0	0	0			3580	1332	3133	10072	10609	10609				1
NLLDQASHSAGTKAPALK	GlyGly (K)	1935.0174	0.017387984	1680	sp|Q8TD43-2|TRPM4_HUMAN;sp|Q8TD43-3|TRPM4_HUMAN;sp|Q8TD43|TRPM4_HUMAN	yes	no	0	0	1	0	1	1									29.751	29.751	3	0.013931	6322	20190821_JH_EV_Ubi	58.09	24.73	1674300	1674300	0	0	0	0	0	0	0	0			3581	1680	3134	10073	10610	10610		1678		1
NLLEISGPETVPLPNVPSIALPSK	Unmodified	2484.3839	0.38394098	1950	sp|Q9H444|CHM4B_HUMAN	yes	yes	0	0	0	0	0	1		1							53.92	53.92	3	5.1518E-05	15398	20190821_JH_WT_Ubi	84.156	62.048	4431700	1600400	0	2831200	0	0	0	0	0	0			3582	1950	3135	10074;10075	10611;10612	10612				2
NLLHVTDTGVGMTR	Oxidation (M)	1528.7668	0.76677595	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	1	0	1	1	1	1	1	1	1	1		29.19	29.19	3	2.267E-60	6234	20190821_JH_EV_Ubi	225.33	179.34	114720000	9887800	1749800	27816000	11544000	9309400	4338700	3186800	46886000	0			3583	557	3136	10076;10077;10078;10079;10080;10081;10082;10083	10613;10614;10615;10616;10617;10618;10619;10620	10613			345	8
NLLHVTDTGVGMTR	Unmodified	1512.7719	0.77186132	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0	1					1				32.414	32.414	3	0.00098473	7462	20190821_JH_EV_Ubi	99.927	49.03	2952800	1989600	0	0	0	0	963190	0	0	0			3584	557	3136	10084;10085	10621;10622	10621				2
NLLSVAYK	Unmodified	906.51747	0.51746776	1078;749;1043;1034;695;750	sp|P63104|1433Z_HUMAN;sp|Q04917|1433F_HUMAN;sp|P61981|1433G_HUMAN;sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN;sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN;sp|P27348|1433T_HUMAN;sp|P31947-2|1433S_HUMAN;sp|P31947|1433S_HUMAN	no	no	0	0	0	0	0								1		34.066	34.066	1	0.034902	9791	20190902_JH_WT_Ubi_2	38.16	11.023	60728000	0	0	0	0	0	0	0	60728000	0			3585	1078;1034;749;1043;695;750	3137	10086	10623	10623				1
NLLSVAYKNVIGAR	GlyGly (K)	1630.9155	0.91548909	1043	sp|P62258-2|1433E_HUMAN;sp|P62258|1433E_HUMAN	yes	no	0	0	1	0	1			1			1	1	1	1	40.295	40.295	3	1.7588E-15	10106	20190821_JH_WT_Ubi	169.09	122.03	36704000	0	0	16969000	0	0	4107600	2477700	7448200	5701500			3586	1043	3138	10087;10088;10089;10090;10091	10624;10625;10626;10627;10628	10626		1020		5
NLLSVAYKNVVGAR	GlyGly (K)	1616.8998	0.89983903	1078;749;1034	sp|P63104|1433Z_HUMAN;sp|Q04917|1433F_HUMAN;sp|P61981|1433G_HUMAN;sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN	no	no	0	0	1	0	1	1	1	1		1			1	1	39.002	39.002	3	3.7585E-37	11072	20190902_JH_WT_Ubi_3	204.32	85.11	132740000	2272900	10445000	52410000	0	610550	0	0	24080000	42918000			3587	1078;1034;749	3139	10092;10093;10094;10095;10096;10097	10629;10630;10631;10632;10633;10634	10634		720		5
NLLSVAYKNVVGGR	GlyGly (K)	1602.8842	0.88418897	695	sp|P27348|1433T_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1		38.614	38.614	3	0.0001974	9091	20190821_JH_MUT_Ubi	113.07	74.489	10190000	0	1103700	4082200	0	0	1688600	1141200	2174300	0			3588	695	3140	10098;10099;10100;10101;10102	10635;10636;10637;10638;10639	10635		681		5
NLNTSALQLEHEHLIK	Unmodified	1858.9901	0.9901106	1359	sp|Q15643|TRIPB_HUMAN	yes	yes	0	0	0	0	0				1						28.572	28.572	3	0.028359	6489	20190902_JH_EV_Ubi_2	46.408	1.7924	954100	0	0	0	954100	0	0	0	0	0			3589	1359	3141	10103	10640	10640				1
NLQEILHGAVR	Unmodified	1248.6939	0.693869	382	sp|P00533|EGFR_HUMAN;sp|P00533-4|EGFR_HUMAN;sp|P00533-3|EGFR_HUMAN;sp|P00533-2|EGFR_HUMAN	yes	no	0	0	0	0	0			1							33.869	33.869	3	0.012497	7595	20190821_JH_WT_Ubi	74.841	33.847	7742300	0	0	7742300	0	0	0	0	0	0			3590	382	3142	10104	10641	10641				1
NLQLDYVDLYLIHFPVSVK	Unmodified	2275.2253	0.22525549	1157	sp|Q04828|AK1C1_HUMAN;sp|P52895|AK1C2_HUMAN;sp|P52895-2|AK1C2_HUMAN	yes	no	0	0	0	0	0								1		54	54	3	0.00073296	16095	20190902_JH_WT_Ubi_2	78.501	18.773	4613600	0	0	0	0	0	0	0	4613600	0			3591	1157	3143	10105	10642	10642				1
NLQQELETQNQKLQR	GlyGly (K)	1983.0134	0.013365238	1139	sp|Q02241-3|KIF23_HUMAN;sp|Q02241-2|KIF23_HUMAN;sp|Q02241|KIF23_HUMAN	yes	no	0	0	1	0	1								1		29.856	29.856	3	0.0020764	8295	20190902_JH_WT_Ubi_2	88.224	56.448	3658300	0	0	0	0	0	0	0	3658300	0			3592	1139	3144	10106	10643	10643		1135		1
NLQSEVEGVKNIMTQNVER	Oxidation (M);GlyGly (K)	2317.1332	0.13322238	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	33.986	33.986	3	1.24E-17	8704	20190902_JH_MUT_Ubi_2	147.17	104.01	50678000	4088500	5382200	6117900	3505000	3213000	12138000	6579500	5444100	4209000			3593	1882	3145	10107;10108;10109;10110;10111;10112;10113;10114;10115	10644;10645;10646;10647;10648;10649;10650;10651;10652	10648		1827	1031	9
NLQSEVEGVKNIMTQNVER	GlyGly (K)	2301.1383	0.13830776	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	1	0	1						1				42.332	42.332	3	0.0001253	12072	20190902_JH_MUT_Ubi_2	97.083	60.486	4720300	0	0	0	0	0	4720300	0	0	0			3594	1882	3145	10116	10653	10653		1827		1
NLQSEVEGVKNIMTQNVER	Oxidation (M);GlyGly (K);Deamidation (NQ)	2318.1172	0.11723796	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	1	1	1	1							1			34.237	34.237	3	0.014908	8467	20190902_JH_MUT_Ubi_3	61.52	32.244	0	0	0	0	0	0	0	0	0	0			3595	1882	3145	10117	10654	10654	597	1827	1031	1
NLQTQQESLQSENIYFESENQKLQQKLK	5 Deamidation (NQ)	3399.6206	0.62055503	1550	sp|Q86UF2|CTGE6_HUMAN	yes	yes	0	5	0	0	2	1									54.383	54.383	3	0.03128	14515	20190821_JH_EV_Ubi	40.142	20.449	0	0	0	0	0	0	0	0	0	0			3596	1550	3146	10118	10655	10655	496;497;1111;1112;1113			1
NLSALENYNFELVDGVKLK	GlyGly (K)	2279.1798	0.17976186	153	sp|O14786|NRP1_HUMAN	yes	yes	0	0	1	0	1	1								1	45.302	45.302	3	3.4108E-13	12242	20190821_JH_EV_Ubi	138.05	97.809	4455500	2275400	0	0	0	0	0	0	0	2180000			3597	153	3147	10119;10120	10656;10657	10656		124;125		2
NLSLSGHVGFDSLPDQLVNK	Unmodified	2139.096	0.096032235	2041	sp|Q9NVA2|SEP11_HUMAN;sp|Q9NVA2-2|SEP11_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	42.76	42.76	3	2.8344E-18	11134	20190821_JH_WT_Ubi	149.19	94.901	46820000	7396800	6851800	19997000	0	0	4207400	1682800	3719100	2964800			3598	2041	3148	10121;10122;10123;10124;10125;10126;10127	10658;10659;10660;10661;10662;10663;10664	10662				7
NLSPKENIYEIR	2 Deamidation (NQ)	1476.746	0.74602373	1411	sp|Q3ZCX4-3|ZN568_HUMAN	yes	yes	0	2	0	0	1								1		37.83	37.83	3	0.031811	11133	20190902_JH_WT_Ubi_2	56.359	6.2714	1693700	0	0	0	0	0	0	0	1693700	0			3599	1411	3149	10128	10665	10665	445;446			1
NLSSASQATRQK	GlyGly (K)	1403.7117	0.71170391	2228	sp|Q9Y446|PKP3_HUMAN;sp|Q9Y446-2|PKP3_HUMAN	yes	no	0	0	1	0	1								1		27.628	27.628	3	0.031604	7518	20190902_JH_WT_Ubi_2	61.419	10.133	57150000	0	0	0	0	0	0	0	57150000	0			3600	2228	3150	10129	10666	10666				1
NLSSPFIFHEKTSEF	GlyGly (K)	1895.9054	0.90537792	935	sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN	yes	no	0	0	1	0	1	1	1	1		1			1	1	39.557	39.557	3	0.0019172	9740	20190821_JH_WT_Ubi	89.747	58.072	65448000	10166000	5768300	21157000	0	7681300	0	0	10606000	10069000			3601	935	3151	10130;10131;10132;10133;10134;10135	10667;10668;10669;10670;10671;10672	10670		900		6
NLTALGLNLVASGGTAK	Unmodified	1598.8992	0.89917033	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	0	0								1		44.919	44.919	2	5.5272E-38	13461	20190902_JH_WT_Ubi_2	209.22	157.69	7074000	0	0	0	0	0	0	0	7074000	0			3602	746	3152	10136	10673	10673				0
NLTNPNTVIILIGNK	Unmodified	1622.9356	0.93555583	1014	sp|P61106|RAB14_HUMAN	yes	yes	0	0	0	0	0	1	1	1						1	45.039	45.039	3	1.6503E-06	12101	20190821_JH_EV_Ubi	133.48	64.13	4850100	2046400	772620	2031100	0	0	0	0	0	0			3603	1014	3153	10137;10138;10139;10140	10674;10675;10676;10677	10674				4
NLVEQHIQDIVVHYTFNK	Unmodified	2196.1328	0.13275209	413	sp|P04843|RPN1_HUMAN	yes	yes	0	0	0	0	0	1		1	1				1	1	42.824	42.824	3	1.9134E-26	11073	20190821_JH_WT_Ubi	171.87	139.01	33721000	3146400	0	19941000	991950	0	0	0	4256500	5385300			3604	413	3154	10141;10142;10143;10144;10145	10678;10679;10680;10681;10682	10680				5
NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGK	Unmodified	3653.7097	0.70966158	1292	sp|Q14376-2|GALE_HUMAN;sp|Q14376|GALE_HUMAN	yes	no	0	0	0	0	0			1							44.34	44.34	3	4.3225E-06	11756	20190821_JH_WT_Ubi	74.381	52.434	5853300	0	0	5853300	0	0	0	0	0	0			3605	1292	3155	10146	10683	10683				1
NLVVIPKSVTPER	GlyGly (K)	1564.8937	0.89369102	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	1	0	1		1	1	1		1	1	1	1	32.917	32.917	3	0.00012231	9489	20190902_JH_WT_Ubi_2	125.36	90.973	74789000	0	1368600	17336000	1931600	0	2504100	3113100	25950000	22585000			3606	563	3156	10147;10148;10149;10150;10151;10152;10153	10684;10685;10686;10687;10688;10689;10690	10689		554		7
NMAEQIIQEIYSQIQSK	Oxidation (M)	2038.0041	0.004105685	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	1	0	1	1	1			1	1			53.846	53.846	3	6.6322E-11	14403	20190821_JH_EV_Ubi	145.69	88.272	8871400	3259500	1372300	2313600	0	0	1124300	801690	0	0			3607	715	3157	10154;10155;10156;10157;10158	10691;10692;10693;10694;10695	10691			449	5
NMDDYEDFDEKHSIYPSEK	Oxidation (M);GlyGly (K)	2491.0122	0.012163768	1464	sp|Q68DH5|LMBD2_HUMAN	yes	yes	0	0	1	1	1				1	1		1			30.095	30.095	4	0.019607	6993	20190902_JH_EV_Ubi_2	47.64	32.134	7200600	0	0	0	2694600	2373600	0	2132400	0	0			3608	1464	3158	10159;10160;10161	10696;10697;10698	10696		1475	893	2
NMDPLNDNIATLLHQSSDK	Oxidation (M)	2141.0059	0.005896599	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	1	0			1							41.24	41.24	3	0.009721	10475	20190821_JH_WT_Ubi	58.848	19.705	8965200	0	0	8965200	0	0	0	0	0	0			3609	776	3159	10162	10699	10699			492	1
NMGGPYGGGNYGPGGSGGSGGYGGR	Oxidation (M)	2204.893	0.89299211	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	0	1	0	1		1	1	1	1	1	1	1	27.718	27.718	3	2.3459E-15	5624	20190821_JH_WT_Ubi	126.62	86.342	50102000	3478200	0	5253300	4668600	6624200	923290	1879100	11984000	15291000			3610	653	3160	10163;10164;10165;10166;10167;10168;10169;10170	10700;10701;10702;10703;10704;10705;10706;10707	10705			407	8
NMITGTAPLDGCILVVAANDGPMPQTR	2 Oxidation (M)	2843.3616	0.36158411	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	2	0			1					1	1	46.425	46.425	3	6.9014E-44	13551	20190902_JH_WT_Ubi_3	171.91	127.6	11900000	0	0	4987300	0	0	0	0	3958300	2954900			3611	883	3161	10171;10172;10173	10708;10709;10710	10710			560;561	3
NMITGTAPLDGCILVVAANDGPMPQTR	Oxidation (M)	2827.3667	0.36666949	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	1	0									1	48.243	48.243	3	7.204E-16	14167	20190902_JH_WT_Ubi_3	126.86	91.687	1157200	0	0	0	0	0	0	0	0	1157200			3612	883	3161	10174	10711;10712	10712			560;561	2
NMITGTSQADCAVLIVAAGVGEFEAGISK	Unmodified	2908.431	0.43104388	1096;1160	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN;sp|Q05639|EF1A2_HUMAN	no	no	0	0	0	0	0	1	1	1							56.044	56.044	3	8.4776E-26	16042	20190821_JH_WT_Ubi	140.81	90.577	18451000	1234500	6606500	10610000	0	0	0	0	0	0			3613	1096;1160	3162	10175;10176;10177	10713;10714;10715	10715				3
NMITGTSQADCAVLIVAAGVGEFEAGISK	Oxidation (M)	2924.426	0.4259585	1096;1160	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN;sp|Q05639|EF1A2_HUMAN	no	no	0	0	0	1	0			1			1		1	1	55.454	55.454	3	3.0506E-61	15879	20190821_JH_WT_Ubi	192.2	144.49	32977000	0	0	25454000	0	0	1799500	0	3243100	2480300			3614	1096;1160	3162	10178;10179;10180;10181	10716;10717;10718;10719;10720	10717			678	5
NMLATPIMNGKDVVAVIMAVNK	Oxidation (M);GlyGly (K)	2458.2746	0.274607	781	sp|P35913|PDE6B_HUMAN;sp|P35913-2|PDE6B_HUMAN	yes	no	0	0	1	1	1	1			1						38.088	38.088	3	0.013952	9468	20190821_JH_EV_Ubi	53.553	14.976	9310300	7118700	0	0	2191600	0	0	0	0	0			3615	781	3163	10182;10183	10721;10722	10721		766	498;499	2
NMSVHLSPCFR	Oxidation (M)	1362.6173	0.61727494	1047	sp|P62280|RS11_HUMAN	yes	yes	0	0	0	1	0		1						1	1	27.65	27.65	3	0.0079471	7187	20190902_JH_WT_Ubi_3	89.9	54.748	15751000	0	785190	0	0	0	0	0	7978200	6987800			3616	1047	3164	10184;10185;10186	10723;10724;10725	10725			645	3
NMSVHLSPCFR	Unmodified	1346.6224	0.62236032	1047	sp|P62280|RS11_HUMAN	yes	yes	0	0	0	0	0			1							31.367	31.367	3	0.013462	6753	20190821_JH_WT_Ubi	73.666	42.235	4034200	0	0	4034200	0	0	0	0	0	0			3617	1047	3164	10187	10726	10726				1
NMSVIAHVDHGK	Oxidation (M)	1322.6401	0.64011887	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	1	0		1			1					17.548	17.548	3	0.0072378	3582	20190902_JH_EV_Ubi_3	85.973	30.512	32899000	0	7496800	0	0	25403000	0	0	0	0			3618	545	3165	10188;10189	10727;10728	10727			329	2
NNAEILVILQEAMQNQVNVNPER	Oxidation (M);3 Deamidation (NQ)	2654.2858	0.28575985	1665	sp|Q8TAK5|GABP2_HUMAN	yes	yes	0	3	0	1	0									1	34.236	34.236	3	0.025009	9538	20190902_JH_WT_Ubi_3	47.648	12.557	0	0	0	0	0	0	0	0	0	0			3619	1665	3166	10190	10729	10729	542;1153;1154		960	1
NNEDISIIPPLFTVSVDHR	Unmodified	2165.1117	0.1116823	919	sp|P51571|SSRD_HUMAN	yes	yes	0	0	0	0	0						1		1	1	50.407	50.407	3	0.0029429	15173	20190902_JH_WT_Ubi_2	68.41	32.299	4236400	0	0	0	0	0	368750	0	1547500	2320200			3620	919	3167	10191;10192;10193	10730;10731;10732	10731				3
NNEESPTATVAEQGEDITSKK	GlyGly (K)	2361.0932	0.093191281	1241	sp|Q13451|FKBP5_HUMAN;sp|Q13451-2|FKBP5_HUMAN	yes	no	0	0	1	0	1		1	1	1		1	1	1	1	28.525	28.525	3	2.5163E-08	6430	20190902_JH_MUT_Ubi_3	116.09	72.299	27731000	0	2636200	2863700	2821900	0	3483900	3285700	6173400	6466200			3621	1241	3168	10194;10195;10196;10197;10198;10199;10200	10733;10734;10735;10736;10737;10738;10739	10736		1308;1309		7
NNEVSFSQIKPK	GlyGly (K)	1503.7682	0.76815616	1203	sp|Q12913|PTPRJ_HUMAN	yes	yes	0	0	1	0	1								1		27.996	27.996	3	0.0035471	7661	20190902_JH_WT_Ubi_2	99.5	37.334	4323000	0	0	0	0	0	0	0	4323000	0			3622	1203	3169	10201	10740	10740		1269		1
NNFGKVLER	GlyGly (K)	1189.6204	0.62036971	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	0	1	0	1		1				1	1			24.838	24.838	3	0.0036354	5359	20190902_JH_MUT_Ubi_3	118.33	55.676	3645300	0	765380	0	0	0	1263100	1616700	0	0			3623	329	3170	10202;10203;10204	10741;10742;10743	10743		306		3
NNFSDTGNFGFGIQEHIDLGIK	Unmodified	2422.1553	0.15533803	1070	sp|P62913-2|RL11_HUMAN;sp|P62913|RL11_HUMAN	yes	no	0	0	0	0	0			1							46.309	46.309	3	0.0017077	12554	20190821_JH_WT_Ubi	66.261	36.625	2693600	0	0	2693600	0	0	0	0	0	0			3624	1070	3171	10205	10744	10744				1
NNGGKMENMQLTLNLQTENK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2407.1108	0.11077238	122	sp|O00308|WWP2_HUMAN;sp|O00308-4|WWP2_HUMAN	yes	no	0	1	1	1	1			1							37.572	37.572	4	0.012289	8996	20190821_JH_WT_Ubi	63.374	12.138	1610600	0	0	1610600	0	0	0	0	0	0			3625	122	3172	10206	10745	10745	48;49	109	55	0
NNQETKPSDDENSDNSNECVVCLSDLR	GlyGly (K)	3252.3531	0.3531405	236	sp|O60291-4|MGRN1_HUMAN;sp|O60291|MGRN1_HUMAN;sp|O60291-3|MGRN1_HUMAN;sp|O60291-2|MGRN1_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	1	34.373	34.373	3	3.2723E-27	8324	20190902_JH_EV_Ubi_3	157.38	136.35	35960000	0	3038100	5882300	2781800	2723300	2710300	2918000	6571400	9334400			3626	236	3173	10207;10208;10209;10210;10211;10212;10213;10214	10746;10747;10748;10749;10750;10751;10752;10753;10754	10748		209		9
NNQFQALLQYADPVSAQHAK	Unmodified	2242.1131	0.11307928	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	43.387	43.387	3	4.0679E-60	13108	20190902_JH_WT_Ubi_2	213.02	177.92	69005000	13353000	3920700	17667000	5191300	6910200	3619200	1316600	7072500	9954300			3627	690	3174	10215;10216;10217;10218;10219;10220;10221;10222;10223	10755;10756;10757;10758;10759;10760;10761;10762;10763	10762				9
NNQFQALLQYADPVSAQHAK	Deamidation (NQ)	2243.0971	0.097094868	690	sp|P26599|PTBP1_HUMAN;sp|P26599-2|PTBP1_HUMAN;sp|P26599-3|PTBP1_HUMAN	yes	no	0	1	0	0	0			1							48.838	48.838	3	7.2512E-05	13566	20190821_JH_WT_Ubi	99.813	67.111	2026200	0	0	2026200	0	0	0	0	0	0			3628	690	3174	10224	10764	10764	245;882			1
NNTLVLQVRKAGMNDAGLYTCK	GlyGly (K);2 Deamidation (NQ)	2581.2629	0.26285634	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN	yes	no	0	2	1	0	2	1									45.449	45.449	3	0.028539	12232	20190821_JH_EV_Ubi	46.982	8.4051	0	0	0	0	0	0	0	0	0	0			3629	1705	3175	10225	10765	10765	555;556	1697		1
NPCIVCADADLDLAVECAHQGVFFNQGQCCTAASR	Unmodified	3953.7012	0.70118064	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0			2							46.81	46.81	3;4	9.9627E-08	12763	20190821_JH_WT_Ubi	83.633	64.255	8578200	0	0	8578200	0	0	0	0	0	0			3630	865	3176	10226;10227	10766;10767	10766				2
NPDDITNEEYGEFYK	Deamidation (NQ)	1833.7581	0.75810456	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	1	0	0	0								1	1	38.945	38.945	2	3.3285E-05	10980	20190902_JH_WT_Ubi_3	120.6	96.752	1215300	0	0	0	0	0	0	0	1215300	0			3631	455	3177	10228;10229	10768;10769	10769	168			1
NPHPSSAFLNLIGFVSR	Unmodified	1854.9741	0.97406661	944	sp|P53004|BIEA_HUMAN	yes	yes	0	0	0	0	0			1					1	1	47.893	47.893	3	0.0001394	13206	20190821_JH_WT_Ubi	104.44	44.241	18605000	0	0	11028000	0	0	0	0	1792300	5785400			3632	944	3178	10230;10231;10232	10770;10771;10772	10770				3
NPIHAIGLLIR	Unmodified	1215.7452	0.74517629	1194	sp|Q12769|NU160_HUMAN;sp|Q12769-3|NU160_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	37.819	37.819	3	0.00071872	9151	20190821_JH_WT_Ubi	117.71	71.28	14016000	0	1016500	5954400	0	0	1245200	1104000	2027800	2667900			3633	1194	3179	10233;10234;10235;10236;10237;10238	10773;10774;10775;10776;10777;10778	10776				6
NPILWNVADVVIK	Unmodified	1479.8449	0.84494991	414	sp|P04844-2|RPN2_HUMAN;sp|P04844|RPN2_HUMAN	yes	no	0	0	0	0	0									1	50.428	50.428	2	0.0055053	14766	20190902_JH_WT_Ubi_3	93.258	69.269	962560	0	0	0	0	0	0	0	0	962560			3634	414	3180	10239	10779	10779				0
NPKFASEFFPHVVDVTHHEDALTK	GlyGly (K)	2878.4038	0.40384158	1656	sp|Q8NFT2-3|STEA2_HUMAN;sp|Q8NFT2-2|STEA2_HUMAN;sp|Q8NFT2|STEA2_HUMAN	yes	no	0	0	1	0	1	1	1							1	36.655	36.655	4	0.00019935	10221	20190902_JH_WT_Ubi_3	75.868	52.302	43041000	4845700	2786000	0	0	0	0	0	0	35409000			3635	1656	3181	10240;10241;10242	10780;10781;10782	10782		1656		3
NPLPSKETIEQEK	GlyGly (K)	1625.8261	0.82606496	1050	sp|P62328|TYB4_HUMAN	yes	yes	0	0	1	0	1	1		1			1	1	1		25.977	25.977	3	0.0071025	5924	20190902_JH_MUT_Ubi_2	82.85	47.733	16884000	681250	0	3362600	0	0	3969700	2701300	6169300	0			3636	1050	3182	10243;10244;10245;10246;10247	10783;10784;10785;10786;10787	10784		1021;1023		5
NPMDYPVEDAFCKPQLVK	Oxidation (M);GlyGly (K)	2280.0555	0.055489328	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	1	1	1	1	37.705	37.705	3	7.1186E-43	9291	20190902_JH_EV_Ubi_2	201.4	170.34	153930000	12506000	13998000	19910000	10773000	5636100	15665000	16766000	25479000	33196000			3637	1655	3183	10248;10249;10250;10251;10252;10253;10254;10255;10256	10788;10789;10790;10791;10792;10793;10794;10795;10796	10789		1654;1655	956	9
NPMDYPVEDAFCKPQLVK	GlyGly (K)	2264.0606	0.060574706	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			40.114	40.114	3	1.8547E-34	9703	20190821_JH_MUT_Ubi	193.3	139.3	23859000	4331200	6839300	0	1406300	940850	4263200	6078100	0	0			3638	1655	3183	10257;10258;10259;10260;10261;10262	10797;10798;10799;10800;10801;10802	10800		1654;1655		6
NPMDYPVEDAFCKPQLVKK	Oxidation (M);2 GlyGly (K)	2522.1934	0.19337979	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	0	2	1	2			1							33.679	33.679	4	0.036136	7511	20190821_JH_WT_Ubi	40.614	15.356	1559700	0	0	1559700	0	0	0	0	0	0			3639	1655	3184	10263	10803	10803		1654;1655	956	0
NPNAMLVNLEEPLASTYQDILYQAK	Oxidation (M)	2850.411	0.41096037	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	1	0			1						1	53.277	53.277	3	1.515E-08	15124	20190821_JH_WT_Ubi	99.13	71.095	2545600	0	0	1865000	0	0	0	0	0	680580			3640	863	3185	10264;10265	10804;10805	10804			544	2
NPNDPGEKDVR	GlyGly (K)	1353.6273	0.62730558	1524	sp|Q7RTX9-2|MOT14_HUMAN;sp|Q7RTX9|MOT14_HUMAN	yes	no	0	0	1	0	1					1					16.676	16.676	3	0.0158	3476	20190902_JH_EV_Ubi_3	77.674	47.9	3095000	0	0	0	0	3095000	0	0	0	0			3641	1524	3186	10266	10806	10806		1518		1
NPPGFAFVEFEDPRDAEDAVR	Unmodified	2377.0975	0.097488798	1380	sp|Q16629-3|SRSF7_HUMAN;sp|Q16629-2|SRSF7_HUMAN;sp|Q16629-4|SRSF7_HUMAN;sp|Q16629|SRSF7_HUMAN	yes	no	0	0	0	0	1								1		46.123	46.123	3	0.0055686	13898	20190902_JH_WT_Ubi_2	70.783	40.294	0	0	0	0	0	0	0	0	0	0			3642	1380	3187	10267	10807	10807				1
NPPINTKSQAVK	GlyGly (K)	1409.7627	0.76267685	189	sp|O15511|ARPC5_HUMAN;sp|O15511-2|ARPC5_HUMAN	yes	no	0	0	1	0	1						1				18.792	18.792	2	0.023456	4156	20190902_JH_MUT_Ubi_2	79.23	34.835	321710	0	0	0	0	0	321710	0	0	0			3643	189	3188	10268	10808	10808		171		1
NPPLAEALLSGDLEKFSR	GlyGly (K)	2070.0746	0.074568512	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN	yes	no	0	0	1	0	1									1	46.582	46.582	3	0.014112	13685	20190902_JH_WT_Ubi_3	57.936	31.127	1112300	0	0	0	0	0	0	0	0	1112300			3644	1446	3189	10269	10809	10809		1462		1
NPSLPSKLDPFESSDPFSSSSVSSK	GlyGly (K)	2739.2875	0.28753399	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN;sp|Q9UBC2-3|EP15R_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	43.003	43.003	3	1.043E-43	12476	20190902_JH_WT_Ubi_3	178.77	143.73	48020000	5318600	7001600	6660100	2283900	2168800	6093200	7264100	5281900	5947900			3645	2101	3190	10270;10271;10272;10273;10274;10275;10276;10277;10278	10810;10811;10812;10813;10814;10815;10816;10817;10818	10818		1977		9
NPSLPSKLDPFESSDPFSSSSVSSK	Unmodified	2625.2446	0.24460655	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN;sp|Q9UBC2-3|EP15R_HUMAN	yes	no	0	0	0	0	1				1						42.863	42.863	3	0.019874	10863	20190902_JH_EV_Ubi_2	56.468	25.784	368130	0	0	0	368130	0	0	0	0	0			3646	2101	3190	10279	10819	10819				1
NPSSSVPPPSAGSVKTSTTGVATTQSPTPR	GlyGly (K)	3009.5003	0.50032074	1700	sp|Q8WWI1-3|LMO7_HUMAN;sp|Q8WWI1-5|LMO7_HUMAN;sp|Q8WWI1-4|LMO7_HUMAN;sp|Q8WWI1-2|LMO7_HUMAN;sp|Q8WWI1|LMO7_HUMAN	yes	no	0	0	1	0	1		1					1			28.834	28.834	3	0.00019014	6516	20190902_JH_MUT_Ubi_3	68.386	36.626	2273800	0	1091500	0	0	0	0	1182300	0	0			3647	1700	3191	10280;10281	10820;10821	10821		1693		2
NPSTNFQEPVQPLTQQQVAQMQLK	Oxidation (M);Deamidation (NQ)	2770.3596	0.3595935	621	sp|P19623|SPEE_HUMAN	yes	yes	0	1	0	1	0								1		38.535	38.535	3	0.001546	11339	20190902_JH_WT_Ubi_2	94.463	60.308	0	0	0	0	0	0	0	0	0	0			3648	621	3192	10282	10822	10822	870;871		380	1
NPTFMGLALHCIASVGSR	Oxidation (M)	1945.9502	0.9502364	325	sp|O94973-3|AP2A2_HUMAN;sp|O94973|AP2A2_HUMAN;sp|O94973-2|AP2A2_HUMAN	yes	no	0	0	0	1	0			1							39.506	39.506	3	0.011947	9737	20190821_JH_WT_Ubi	58.246	27.341	3887100	0	0	3887100	0	0	0	0	0	0			3649	325	3193	10283	10823	10823			152	1
NPTQFLQIELQVRDINDHSPVFLEK	3 Deamidation (NQ)	2982.4975	0.49746719	2240	sp|Q9Y5F1|PCDBC_HUMAN	yes	yes	0	3	0	0	1					1					45.983	45.983	3	0.034883	11629	20190902_JH_EV_Ubi_3	45.395	6.3099	1007500	0	0	0	0	1007500	0	0	0	0			3650	2240	3194	10284	10824	10824	704;1334;1335			1
NQAEEKAAEQFR	2 Deamidation (NQ)	1421.6423	0.64228694	1624	sp|Q8N954-2|GPT11_HUMAN;sp|Q8N954|GPT11_HUMAN	yes	no	0	2	0	0	1									1	24.305	24.305	2	0.022613	6287	20190902_JH_WT_Ubi_3	61.765	19.574	1169200	0	0	0	0	0	0	0	0	1169200			3651	1624	3195	10285	10825	10825	1141;1142			1
NQALEQELR	3 Deamidation (NQ)	1102.5142	0.51423288	170	sp|O15049|N4BP3_HUMAN	yes	yes	0	3	0	0	0									1	33.074	33.074	2	0.031554	9174	20190902_JH_WT_Ubi_3	55.531	17.803	2514500	0	0	0	0	0	0	0	0	2514500			3652	170	3196	10286	10826	10826	61;766;767			0
NQALNTDNYGHDLASVQALQR	Unmodified	2327.1254	0.12543488	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0								1		36.089	36.089	3	0.009941	10522	20190902_JH_WT_Ubi_2	52.814	15.656	4287800	0	0	0	0	0	0	0	4287800	0			3653	1262	3197	10287	10827	10827				1
NQEQLAAELAEFTAK	Unmodified	1661.8261	0.82606496	773	sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-4|RADI_HUMAN;sp|P35241-2|RADI_HUMAN	yes	no	0	0	0	0	0			1						1	45.35	45.35	3	0.00049489	13276	20190902_JH_WT_Ubi_3	102.64	54.17	1613600	0	0	0	0	0	0	0	0	1613600			3654	773	3198	10288;10289	10828;10829	10829				2
NQKDPGVLDR	GlyGly (K)	1254.6317	0.63166267	751	sp|P31949|S10AB_HUMAN	yes	yes	0	0	1	0	1		1					1			20.368	20.368	3	0.0030617	4283	20190902_JH_MUT_Ubi_3	106.62	52.421	4074600	0	1501600	0	0	0	0	2573000	0	0			3655	751	3199	10290;10291	10830;10831	10831		723		2
NQKEATNTTSEPSAPSQDLLDLSPSPR	GlyGly (K)	2996.4323	0.43230075	299	sp|O75674-2|TM1L1_HUMAN;sp|O75674-3|TM1L1_HUMAN;sp|O75674|TM1L1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	36.413	36.413	3	8.0995E-54	9082	20190902_JH_MUT_Ubi_3	190.99	162.32	77732000	16968000	7650500	4372200	10960000	10711000	11043000	9322200	3664500	3041000			3656	299	3200	10292;10293;10294;10295;10296;10297;10298;10299;10300	10832;10833;10834;10835;10836;10837;10838;10839;10840;10841;10842;10843	10838		285		12
NQKEATNTTSEPSAPSQDLLDLSPSPR	GlyGly (K);Deamidation (NQ)	2997.4163	0.41631633	299	sp|O75674-2|TM1L1_HUMAN;sp|O75674-3|TM1L1_HUMAN;sp|O75674|TM1L1_HUMAN	yes	no	0	1	1	0	1					1					40.284	40.284	3	0.0024985	10127	20190902_JH_EV_Ubi_3	76.98	49.426	718830	0	0	0	0	718830	0	0	0	0			3657	299	3200	10301	10844	10844	101	285		1
NQLGGPFLLEVENNER	3 Deamidation (NQ)	1830.8636	0.86357268	1970	sp|Q9H8Q6|HEAS1_HUMAN	yes	yes	0	3	0	0	0						1				49.805	49.805	2	0.035734	14301	20190902_JH_MUT_Ubi_2	43.544	16.757	0	0	0	0	0	0	0	0	0	0			3658	1970	3201	10302	10845	10845	625;626;627			1
NQLNPIGSLQELAIHHGWR	Unmodified	2182.1396	0.13956881	294	sp|O75569-3|PRKRA_HUMAN;sp|O75569-2|PRKRA_HUMAN;sp|O75569|PRKRA_HUMAN	yes	no	0	0	0	0	0			1					1		42.999	42.999	4	0.016093	11153	20190821_JH_WT_Ubi	47.855	24.293	14993000	0	0	12550000	0	0	0	0	2443200	0			3659	294	3202	10303;10304	10846;10847	10846				2
NQQVKQAFKDVLR	GlyGly (K);Deamidation (NQ)	1687.9006	0.90056731	91	sp|A6NM76|O6C76_HUMAN	yes	yes	0	1	1	0	2	1									27.821	27.821	4	0.024475	5586	20190821_JH_EV_Ubi	57.225	27.42	1832600	1832600	0	0	0	0	0	0	0	0			3660	91	3203	10305	10848	10848	747	80		0
NQSQGYNQWQQGQFWGQK	Unmodified	2210.9882	0.98821312	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	0	0	0		1								38.251	38.251	2	3.421E-08	8824	20190821_JH_MUT_Ubi	124.21	92.728	634100	0	634100	0	0	0	0	0	0	0			3661	1128	3204	10306	10849	10849				1
NQTVVDVAVLTSFLQDEKVK	GlyGly (K)	2346.2431	0.2430904	346	sp|O95477|ABCA1_HUMAN	yes	yes	0	0	1	0	1			1					1		49.69	49.69	3	5.715E-05	13812	20190821_JH_WT_Ubi	97.713	65.024	7339100	0	0	6197400	0	0	0	0	1141700	0			3662	346	3205	10307;10308	10850;10851	10850		317		2
NQVALNPQNTVFDAKR	GlyGly (K)	1927.9864	0.98642221	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1			31.846	31.846	3	2.0288E-10	6646	20190821_JH_MUT_Ubi	145.49	107.94	15020000	2246500	2047700	2755800	0	0	3806900	4163100	0	0			3663	503	3206	10309;10310;10311;10312;10313	10852;10853;10854;10855;10856	10853		489		5
NQVAMNPTNTVFDAKR	Oxidation (M);GlyGly (K)	1934.9269	0.92685842	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	1	1	2			1	1	1	1	1	1	27.644	27.644	3	7.3167E-11	5668	20190821_JH_EV_Ubi	146.27	105.18	126850000	15808000	0	0	17963000	10589000	12211000	19106000	21411000	29759000			3664	519	3207	10314;10315;10316;10317;10318;10319;10320;10321	10857;10858;10859;10860;10861;10862;10863;10864	10857		518	307	8
NQVAMNPTNTVFDAKR	GlyGly (K)	1918.9319	0.93194379	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	0	1	1	1		1		1	1	1		30.999	30.999	3	8.9845E-19	7611	20190902_JH_MUT_Ubi_2	162.88	118.44	27558000	3685100	4315500	0	1386300	0	6861200	5053300	6256600	0			3665	519	3207	10322;10323;10324;10325;10326;10327	10865;10866;10867;10868;10869;10870	10868		518		6
NRPSSGSLIQVVTTEGR	Unmodified	1799.949	0.94897407	487	sp|P09417-2|DHPR_HUMAN;sp|P09417|DHPR_HUMAN	yes	no	0	0	0	0	1	1		1							32.987	32.987	3	0.0014317	7250	20190821_JH_WT_Ubi	99.055	67.228	8851600	2272400	0	6579200	0	0	0	0	0	0			3666	487	3208	10328;10329	10871;10872	10872				2
NSATPKQKPLPPLFTLGPPPPK	2 GlyGly (K);2 Deamidation (NQ)	2554.3795	0.3795243	171	sp|O15117|FYB1_HUMAN;sp|O15117-2|FYB1_HUMAN;sp|O15117-3|FYB1_HUMAN	yes	no	0	2	2	0	2	1			1						33.274	33.274	4	0.0096999	7867	20190902_JH_EV_Ubi_2	52.784	29.685	6774900	4899700	0	0	1875200	0	0	0	0	0			3667	171	3209	10330;10331	10873;10874	10874	62;768	141;142;143		2
NSCIVCNMGHSNTEIDVTSLR	Oxidation (M)	2422.0675	0.067527353	226	sp|O43865-2|SAHH2_HUMAN;sp|O43865|SAHH2_HUMAN	yes	no	0	0	0	1	0			1					1	1	32.696	32.696	3	0.00014357	8935	20190902_JH_WT_Ubi_3	83.948	53.809	7751200	0	0	2841200	0	0	0	0	2748100	2161800			3668	226	3210	10332;10333;10334	10875;10876;10877	10877			95	3
NSCIVCNMGHSNTEIDVTSLR	Unmodified	2406.0726	0.072612731	226	sp|O43865-2|SAHH2_HUMAN;sp|O43865|SAHH2_HUMAN	yes	no	0	0	0	0	0			1							35.737	35.737	3	0.013019	8278	20190821_JH_WT_Ubi	50.098	22.398	1854400	0	0	1854400	0	0	0	0	0	0			3669	226	3210	10335	10878	10878				1
NSDEADLVPAKEANVK	GlyGly (K)	1812.8854	0.88537076	1111	sp|P83916|CBX1_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			27.289	27.289	3	2.7496E-19	4994	20190821_JH_MUT_Ubi	168	118.67	28999000	3521000	3382300	0	3297600	5767000	8362500	4668100	0	0			3670	1111	3211	10336;10337;10338;10339;10340;10341	10879;10880;10881;10882;10883;10884	10882		1106;1107		5
NSETKNLCLLETAQ	GlyGly (K)	1733.8254	0.82541304	853	sp|P46091|GPR1_HUMAN	yes	yes	0	0	1	0	1						1	1	1		35.104	35.104	2	0.0017885	10287	20190902_JH_WT_Ubi_2	104.41	48.603	7196000	0	0	0	0	0	1333600	1124000	4738400	0			3671	853	3212	10342;10343;10344	10885;10886;10887	10887		830		3
NSKNSNGQELEK	GlyGly (K);3 Deamidation (NQ)	1463.6376	0.63759549	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	3	1	0	1									1	28.512	28.512	3	0.028345	7558	20190902_JH_WT_Ubi_3	53.448	23.512	3053600	0	0	0	0	0	0	0	0	3053600			3672	1539	3213	10345	10888	10888	488;489;490	1528		1
NSNLVGAAHEELQQSR	Unmodified	1751.8551	0.85507368	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	0	0	0				1				2	1	27.684	27.684	2;3	1.5948E-19	7569	20190902_JH_WT_Ubi_2	170.26	96.311	36851000	0	0	0	5221800	0	0	0	18655000	12974000			3673	390;391	3214	10346;10347;10348;10349	10889;10890;10891;10892	10891				3
NSQFAGGPLGNPNTTAKVQQR	GlyGly (K)	2298.1465	0.14650468	301	sp|O75694-2|NU155_HUMAN;sp|O75694|NU155_HUMAN	yes	no	0	0	1	0	1	1	1	1				1	1	1	28.609	28.609	3	4.7309E-29	7911	20190902_JH_WT_Ubi_2	163.11	113.89	76659000	10317000	8681400	12711000	0	0	0	10685000	15082000	19182000			3674	301	3215	10350;10351;10352;10353;10354;10355	10893;10894;10895;10896;10897;10898	10897		288		6
NSSYFVEWIPNNVK	Unmodified	1695.8257	0.82567103	1099;448;1878;1248	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|Q9BUF5|TBB6_HUMAN;sp|P07437|TBB5_HUMAN;sp|Q13509-2|TBB3_HUMAN;sp|Q13509|TBB3_HUMAN	no	no	0	0	0	0	0			1							45.442	45.442	3	0.0013138	12230	20190821_JH_WT_Ubi	96.059	64.844	1990200	0	0	1990200	0	0	0	0	0	0			3675	1099;1878;448;1248	3216	10356	10899	10899				1
NSSYFVEWIPNNVKTAVCDIPPR	GlyGly (K)	2819.3701	0.37009861	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	0	1	0	1		1								47.485	47.485	3	0.010597	12331	20190821_JH_MUT_Ubi	51.688	24.193	867670	0	867670	0	0	0	0	0	0	0			3676	1099;448	3217	10357	10900	10900		449		1
NSTIPTKQTQIFTTYSDNQPGVLIQVYEGER	GlyGly (K);2 Deamidation (NQ)	3642.769	0.7689506	503;766	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN;sp|P34931|HS71L_HUMAN	no	no	0	2	1	0	1		1								42.85	42.85	3	0.0030699	10634	20190821_JH_MUT_Ubi	57.347	12.626	1823900	0	1823900	0	0	0	0	0	0	0			3677	503;766	3218	10358	10901	10901	192;850;851;852	490		1
NSTIVFPLPIDMLQGIIGAK	Oxidation (M)	2142.1759	0.17586246	693	sp|P27105|STOM_HUMAN;sp|P27105-2|STOM_HUMAN	yes	no	0	0	0	1	0	1	1			1	1	1			55.603	55.603	3	1.4053E-39	14849	20190821_JH_MUT_Ubi	188.54	158.05	28218000	3815000	9713700	0	0	0	5684100	9004800	0	0			3678	693	3219	10359;10360;10361;10362;10363	10902;10903;10904;10905;10906	10904			434	5
NSTIVFPLPIDMLQGIIGAK	Unmodified	2126.1809	0.18094784	693	sp|P27105|STOM_HUMAN;sp|P27105-2|STOM_HUMAN	yes	no	0	0	0	0	0		1								58.133	58.133	3	0.00032847	15186	20190821_JH_MUT_Ubi	82.367	55.338	980940	0	980940	0	0	0	0	0	0	0			3679	693	3219	10364	10907	10907				1
NSVSQISVLSGGK	Unmodified	1274.683	0.68302954	174	sp|O15143|ARC1B_HUMAN	yes	yes	0	0	0	0	0					1					32.116	32.116	2	0.00083408	7640	20190902_JH_EV_Ubi_3	112.64	64.729	1185400	0	0	0	0	1185400	0	0	0	0			3680	174	3220	10365	10908	10908				0
NSYATTENKTLPR	GlyGly (K)	1607.7903	0.79034816	2194	sp|Q9UQB8-3|BAIP2_HUMAN;sp|Q9UQB8-5|BAIP2_HUMAN;sp|Q9UQB8-4|BAIP2_HUMAN;sp|Q9UQB8-2|BAIP2_HUMAN;sp|Q9UQB8|BAIP2_HUMAN	yes	no	0	0	1	0	1		1				1	1			22.682	22.682	3	0.00079724	5035	20190902_JH_MUT_Ubi_2	109.72	75.457	7472700	0	942210	0	0	0	3098200	3432300	0	0			3681	2194	3221	10366;10367;10368	10909;10910;10911	10910		2049		3
NTDVAQSPEAPK	Unmodified	1255.6044	0.60444487	2092	sp|Q9P2E9-3|RRBP1_HUMAN;sp|Q9P2E9-2|RRBP1_HUMAN;sp|Q9P2E9|RRBP1_HUMAN	yes	no	0	0	0	0	0			1							22.029	22.029	2	3.3368E-06	4090	20190821_JH_WT_Ubi	132.03	66.563	1869200	0	0	1869200	0	0	0	0	0	0			3682	2092	3222	10369	10912	10912				0
NTHATTHNAYDLEVIDIFK	Unmodified	2201.0753	0.075296793	496	sp|P09874|PARP1_HUMAN	yes	yes	0	0	0	0	0	1									40.95	40.95	4	0.021902	10553	20190821_JH_EV_Ubi	43.532	8.6222	846630	846630	0	0	0	0	0	0	0	0			3683	496	3223	10370	10913	10913				1
NTHTLLLAGVFR	Unmodified	1340.7565	0.75646926	2254	sp|Q9Y678|COPG1_HUMAN	yes	yes	0	0	0	0	0			1						1	38.166	38.166	3	0.0040818	9275	20190821_JH_WT_Ubi	92.792	53.526	29673000	0	0	15497000	0	0	0	0	0	14175000			3684	2254	3224	10371;10372	10914;10915	10914				2
NTKQEIAEINR	GlyGly (K)	1428.7321	0.732105	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446	yes	no	0	0	1	0	1		1			1	1	1	1		22.597	22.597	3	0.0011262	3605	20190821_JH_MUT_Ubi	115	31.121	11192000	0	1715600	0	0	1551900	2709000	2436500	2778800	0		+	3685	3	3225	10373;10374;10375;10376;10377	10916;10917;10918;10919;10920	10917		5		5
NTLEWCLPVIDAKNK	GlyGly (K)	1913.9669	0.96693232	872	sp|P48444-2|COPD_HUMAN;sp|P48444|COPD_HUMAN	yes	no	0	0	1	0	1		1								41.696	41.696	3	0.022534	10162	20190821_JH_MUT_Ubi	58.885	19.225	787870	0	787870	0	0	0	0	0	0	0			3686	872	3226	10378	10921	10921		851;852		1
NTLIMGLGTQGAEKK	Oxidation (M);GlyGly (K)	1689.872	0.8719693	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	1	1		1				1	1			27.703	27.703	3	0.0010873	6191	20190902_JH_MUT_Ubi_3	95.822	60.924	8456500	0	1652500	0	0	0	3562700	3241300	0	0			3687	1570	3227	10379;10380;10381	10922;10923;10924	10924		1563;1564	927	3
NTLLIAGLQAR	Unmodified	1168.6928	0.69280637	805	sp|P39656-2|OST48_HUMAN;sp|P39656-3|OST48_HUMAN;sp|P39656|OST48_HUMAN	yes	no	0	0	0	0	0							1			38.648	38.648	2	0.0042666	9872	20190902_JH_MUT_Ubi_3	103.7	60.454	1404800	0	0	0	0	0	0	1404800	0	0			3688	805	3228	10382	10925	10925				0
NTLPTKETIEQEK	GlyGly (K)	1643.8366	0.83662965	12	CON__P21752;sp|P63313|TYB10_HUMAN	yes	no	0	0	1	0	1	1	1	1			1		1	1	25.564	25.564	3	0.00041859	5778	20190902_JH_MUT_Ubi_2	115.57	47.134	31596000	1177100	3104700	2413500	0	0	6162000	0	5024800	13714000		+	3689	12	3229	10383;10384;10385;10386;10387;10388	10926;10927;10928;10929;10930;10931;10932	10928		37		5
NTSDVISAAKK	GlyGly (K)	1246.6517	0.65172941	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	1	0	1							1			20.799	20.799	3	0.03475	4446	20190902_JH_MUT_Ubi_3	51.612	19.134	582050	0	0	0	0	0	0	582050	0	0			3690	769	3230	10389	10933	10933				0
NTSGILGFSVTVGTQATK	Unmodified	1779.9367	0.93667805	224	sp|O43847|NRDC_HUMAN;sp|O43847-2|NRDC_HUMAN	yes	no	0	0	0	0	0		1								44.063	44.063	2	0.0028023	11085	20190821_JH_MUT_Ubi	81.703	40.586	1160200	0	1160200	0	0	0	0	0	0	0			3691	224	3231	10390	10934	10934				0
NTTIPTKQTQTFTTYSDNQPGVLIQVYEGER	GlyGly (K)	3642.7802	0.78018399	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	1	0	1			1			1				42.439	42.439	3	2.4373E-06	11030	20190821_JH_WT_Ubi	86.076	21.008	4567200	0	0	3545200	0	0	1022000	0	0	0			3692	519	3232	10391;10392	10935;10936	10936		519		2
NTTSKSMEAGSSTEGK	Oxidation (M);GlyGly (K)	1743.7581	0.75812133	2114	sp|Q9UGH3-2|S23A2_HUMAN;sp|Q9UGH3|S23A2_HUMAN	yes	no	0	0	1	1	1	1				1	1				10.154	10.154	3	0.001231	2422	20190902_JH_MUT_Ubi_2	93.424	67.312	12574000	5506800	0	0	0	4837500	2229700	0	0	0			3693	2114	3233	10393;10394;10395	10937;10938;10939	10939		1986;1987	1118	3
NTVVATGGYGR	Unmodified	1093.5516	0.55162144	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN	yes	no	0	0	0	0	0								1		24.395	24.395	2	0.034882	6417	20190902_JH_WT_Ubi_2	58.63	16.521	8079600	0	0	0	0	0	0	0	8079600	0			3694	739	3234	10396	10940	10940				0
NVALLSQLYHSPAR	Unmodified	1567.8471	0.84707518	1362	sp|Q15717|ELAV1_HUMAN;sp|Q15717-2|ELAV1_HUMAN	yes	no	0	0	0	0	0			1							36.874	36.874	3	0.010946	8700	20190821_JH_WT_Ubi	67.952	40.923	6759800	0	0	6759800	0	0	0	0	0	0			3695	1362	3235	10397	10941	10941				1
NVAQLINERKR	GlyGly (K);2 Deamidation (NQ)	1455.7794	0.77938954	2012	sp|Q9NR80-3|ARHG4_HUMAN;sp|Q9NR80-4|ARHG4_HUMAN;sp|Q9NR80|ARHG4_HUMAN	yes	no	0	2	1	0	2							1			24.103	24.103	3	0.026136	5237	20190902_JH_MUT_Ubi_3	80.706	7.8583	3430300	0	0	0	0	0	0	3430300	0	0			3696	2012	3236	10398	10942	10942	645;1270	1922		1
NVASVCLQIGYPTVASVPHSIINGYK	Deamidation (NQ)	2787.4266	0.42655085	428	sp|P05388-2|RLA0_HUMAN;sp|P05388|RLA0_HUMAN	yes	no	0	1	0	0	0		1	1						1	46.33	46.33	3	5.8699E-12	12039	20190821_JH_MUT_Ubi	112.41	84.111	42886000	0	16388000	24368000	0	0	0	0	0	2129700			3697	428	3237	10399;10400;10401	10943;10944;10945	10943	150			3
NVDLLSDMVQEHDEPILK	Oxidation (M)	2110.0252	0.025235058	980	sp|P55209|NP1L1_HUMAN;sp|P55209-2|NP1L1_HUMAN;sp|P55209-3|NP1L1_HUMAN	yes	no	0	0	0	1	0	1		1					1		38.873	38.873	3	0.028998	9688	20190821_JH_EV_Ubi	46.249	16.115	14717000	2084300	0	6852900	0	0	0	0	5779800	0			3698	980	3238	10402;10403;10404	10946;10947;10948	10946			609	3
NVDLLSDMVQEHDEPILK	Unmodified	2094.0303	0.030320436	980	sp|P55209|NP1L1_HUMAN;sp|P55209-2|NP1L1_HUMAN;sp|P55209-3|NP1L1_HUMAN	yes	no	0	0	0	0	0								1	1	44.809	44.809	3	0.0030915	13510	20190902_JH_WT_Ubi_2	70.197	34.085	5690300	0	0	0	0	0	0	0	2821900	2868400			3699	980	3238	10405;10406	10949;10950	10949				2
NVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEHR	GlyGly (K)	4150.1157	0.11572841	843	sp|P43353|AL3B1_HUMAN;sp|P43353-2|AL3B1_HUMAN	yes	no	0	0	1	0	1			1							53.899	53.899	4	2.0043E-05	15397	20190821_JH_WT_Ubi	67.793	51.579	14300000	0	0	14300000	0	0	0	0	0	0			3700	843	3239	10407	10951	10951		819		1
NVFDEAILAALEPPEPK	Unmodified	1851.9618	0.96183016	1005	sp|P60953|CDC42_HUMAN	yes	yes	0	0	0	0	0			1					1	1	54.898	54.898	2;3	0.00046934	15741	20190902_JH_WT_Ubi_3	93.152	63.661	4795500	0	0	2545000	0	0	0	0	889850	1360700			3701	1005	3240	10408;10409;10410	10952;10953;10954	10954				2
NVFDEAILAALEPPEPKK	GlyGly (K)	2094.0997	0.09972063	1005	sp|P60953|CDC42_HUMAN	yes	yes	0	0	1	0	1	1									49.945	49.945	3	0.017852	13558	20190821_JH_EV_Ubi	57.525	28.426	452680	452680	0	0	0	0	0	0	0	0			3702	1005	3241	10411	10955	10955		995		1
NVFIIGATNRPDIIDPAILRPGR	Unmodified	2517.418	0.4179755	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	2		1	1					1		44.744	44.744	3	1.4292E-07	11885	20190821_JH_WT_Ubi	114.56	80.154	41926000	0	7574800	29828000	0	0	0	0	4522800	0			3703	974	3242	10412;10413;10414	10956;10957;10958	10957				3
NVHGINFVSPVR	Unmodified	1337.7204	0.7204181	951	sp|P53634|CATC_HUMAN	yes	yes	0	0	0	0	0								1	1	31.659	31.659	3	0.0038336	8581	20190902_JH_WT_Ubi_3	93.839	58.661	18187000	0	0	0	0	0	0	0	9936000	8250500			3704	951	3243	10415;10416	10959;10960	10960				2
NVIFEISPTEEVGDFEVK	Unmodified	2051.0099	0.0099025694	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1							49.794	49.794	2	2.3426E-08	13887	20190821_JH_WT_Ubi	127.66	59.129	4027000	0	0	4027000	0	0	0	0	0	0			3705	863	3244	10417	10961	10961				1
NVIGLQMGTNR	Oxidation (M);Deamidation (NQ)	1218.6027	0.60267073	796	sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN	yes	no	0	1	0	1	0									1	28.881	28.881	2	0.021918	7666	20190902_JH_WT_Ubi_3	61.353	23.332	14896000	0	0	0	0	0	0	0	0	14896000			3706	796	3245	10418	10962	10962	280;911		508	1
NVIIWGNHSSTQYPDVNHAK	Unmodified	2279.1083	0.10832826	815	sp|P40925-2|MDHC_HUMAN;sp|P40925|MDHC_HUMAN;sp|P40925-3|MDHC_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1			1	30.519	30.519	3	1.5182E-13	6500	20190821_JH_WT_Ubi	135.36	102.64	245430000	30812000	10294000	88955000	19961000	17766000	12534000	0	0	65103000			3707	815	3246	10419;10420;10421;10422;10423;10424;10425	10963;10964;10965;10966;10967;10968;10969	10968				7
NVIIWGNHSSTQYPDVNHAK	Deamidation (NQ)	2280.0923	0.092343841	815	sp|P40925-2|MDHC_HUMAN;sp|P40925|MDHC_HUMAN;sp|P40925-3|MDHC_HUMAN	yes	no	0	1	0	0	0			1					1		32.192	32.192	3	0.017903	8848	20190902_JH_WT_Ubi_2	69.935	42.664	7972300	0	0	4881900	0	0	0	0	3090400	0			3708	815	3246	10426;10427	10970;10971	10971	916			2
NVINVPGEKRTENGVGNPR	Deamidation (NQ)	2050.0556	0.055564404	1796	sp|Q96KQ4|ASPP1_HUMAN	yes	yes	0	1	0	0	2							1			40.061	40.061	3	0.014364	10313	20190902_JH_MUT_Ubi_3	64.507	8.9186	2606800	0	0	0	0	0	0	2606800	0	0			3709	1796	3247	10428	10972	10972	574			1
NVIQSVLQAIR	Unmodified	1239.7299	0.72992016	1522	sp|Q7L576|CYFP1_HUMAN	yes	yes	0	0	0	0	0								1		49.516	49.516	2	0.031731	14852	20190902_JH_WT_Ubi_2	63.076	24.783	531850	0	0	0	0	0	0	0	531850	0			3710	1522	3248	10429	10973	10973				0
NVKDGLITPTIAPNGAQVLQVK	GlyGly (K);Deamidation (NQ)	2390.3169	0.31692405	1546	sp|Q86TG7|PEG10_HUMAN	yes	yes	0	1	1	0	1	1	1	1	1		1	1	1		41.768	41.768	3	3.3459E-06	11705	20190902_JH_MUT_Ubi_2	105.79	76.83	61570000	3357400	17281000	3840900	8025200	0	4916400	21642000	2507400	0			3711	1546	3249	10430;10431;10432;10433;10434;10435;10436	10974;10975;10976;10977;10978;10979;10980	10977	495;1109;1110	1540;1541		7
NVKDGLITPTIAPNGAQVLQVK	GlyGly (K);2 Deamidation (NQ)	2391.3009	0.30093963	1546	sp|Q86TG7|PEG10_HUMAN	yes	yes	0	2	1	0	1						1	1			42.173	42.173	3	0.029898	11030	20190902_JH_MUT_Ubi_3	47.32	18.202	3003600	0	0	0	0	0	1284900	1718600	0	0			3712	1546	3249	10437;10438	10981;10982	10982	495;1109;1110	1540;1541		1
NVKDGLITPTIAPNGAQVLQVKR	2 GlyGly (K);Deamidation (NQ)	2660.461	0.46096252	1546	sp|Q86TG7|PEG10_HUMAN	yes	yes	0	1	2	0	2	1					1				37.918	37.918	3;4	6.004E-11	10253	20190902_JH_MUT_Ubi_2	124.76	103.7	9642500	8142100	0	0	0	0	1500400	0	0	0			3713	1546	3250	10439;10440	10983;10984	10984	495;1109;1110	1540;1541		2
NVKQHADQTVNEDSEGR	3 Deamidation (NQ)	1928.8348	0.83479175	1814	sp|Q96RI1-5|NR1H4_HUMAN;sp|Q96RI1-2|NR1H4_HUMAN;sp|Q96RI1-1|NR1H4_HUMAN;sp|Q96RI1-4|NR1H4_HUMAN;sp|Q96RI1|NR1H4_HUMAN	yes	no	0	3	0	0	1	1									42.029	42.029	3	0.033325	10960	20190821_JH_EV_Ubi	57.328	38.041	5114600	5114600	0	0	0	0	0	0	0	0			3714	1814	3251	10441	10985	10985	582;1195;1196			1
NVLCSACSGQGGKSGAVQK	GlyGly (K)	2020.9419	0.94185655	264	sp|O60884|DNJA2_HUMAN	yes	yes	0	0	1	0	1		1					1			21.265	21.265	3	0.00021896	4493	20190902_JH_MUT_Ubi_3	91.657	50.115	2060700	0	641150	0	0	0	0	1419600	0	0			3715	264	3252	10442;10443	10986;10987	10987		257;258		2
NVLGHMQQGGAPSPFDR	Oxidation (M)	1825.853	0.85296519	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	1	0			1					1	1	28.618	28.618	3	0.00503	7514	20190902_JH_WT_Ubi_3	70.451	34.059	25362000	0	0	5856500	0	0	0	0	9026800	10478000			3716	1136	3253	10444;10445;10446	10988;10989;10990	10990			707	3
NVLGHMQQGGAPSPFDR	Unmodified	1809.8581	0.85805057	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	0								1		32.443	32.443	3	0.024535	9216	20190902_JH_WT_Ubi_2	47.217	7.5327	1938600	0	0	0	0	0	0	0	1938600	0			3717	1136	3253	10447	10991	10991				1
NVLIFDLGGGTFDVSILTIEDGIFEVK	Unmodified	2910.5266	0.52664205	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN;sp|P54652|HSP72_HUMAN	yes	no	0	0	0	0	0				1	1				1	59.811	59.811	3	1.4688E-26	14023	20190902_JH_EV_Ubi_3	148.26	121.2	1948000	0	0	0	375010	982620	0	0	0	590370			3718	519	3254	10448;10449;10450	10992;10993;10994;10995	10993				4
NVMILTNPVAAK	Unmodified	1269.7115	0.7114929	2115	sp|Q9UGI8-2|TES_HUMAN;sp|Q9UGI8|TES_HUMAN	yes	no	0	0	0	0	0									1	37.638	37.638	2	0.037225	10648	20190902_JH_WT_Ubi_3	55.401	27.658	1209500	0	0	0	0	0	0	0	0	1209500			3719	2115	3255	10451	10996	10996				0
NVNAGGHKLGLGLEFQA	GlyGly (K)	1837.9435	0.94349476	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	1	0	1		1	1							36.454	36.454	3	0.0051287	8488	20190821_JH_WT_Ubi	71.531	32.368	25609000	0	2618600	22990000	0	0	0	0	0	0			3720	640	3256	10452;10453	10997;10998	10998		612		2
NVNIFKFIIPNVVK	GlyGly (K)	1758.0192	0.019225885	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	1	0	1			1							49.739	49.739	3	0.0027018	13901	20190821_JH_WT_Ubi	89.189	76.657	1938300	0	0	1938300	0	0	0	0	0	0			3721	373	3257	10454	10999	10999		334;336		1
NVNIQNFHISWK	Unmodified	1498.7681	0.76809658	537	sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	38.534	38.534	3	0.0032668	10924	20190902_JH_WT_Ubi_3	96.229	46.949	90943000	0	12165000	34823000	0	0	11066000	8654700	10585000	13650000			3722	537	3258	10455;10456;10457;10458;10459;10460	11000;11001;11002;11003;11004;11005	11005				6
NVNVQNFHISWK	Unmodified	1484.7524	0.75244651	214	sp|O43707|ACTN4_HUMAN	yes	yes	0	0	0	0	0	1	1	2			1	1		1	36.438	36.438	2;3	8.6081E-57	8587	20190821_JH_WT_Ubi	221.5	164.15	200490000	4007800	14755000	125450000	0	0	16767000	11031000	0	28482000			3723	214	3259	10461;10462;10463;10464;10465;10466;10467	11006;11007;11008;11009;11010;11011;11012	11011				7
NVPHEDICEDSDIDGDYR	Unmodified	2147.8702	0.87019098	136	sp|O00629|IMA3_HUMAN	yes	yes	0	0	0	0	0								1		30.585	30.585	3	0.0032114	8551	20190902_JH_WT_Ubi_2	93.495	67.887	0	0	0	0	0	0	0	0	0	0			3724	136	3260	10468	11013	11013				1
NVQDIKNVVLQTLEGHLR	GlyGly (K)	2189.1917	0.19166395	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	1	0	1			1							49.036	49.036	3	0.00093611	13639	20190821_JH_WT_Ubi	83.253	58.459	2143700	0	0	2143700	0	0	0	0	0	0			3725	1288	3261	10469	11014	11014		1350		1
NVQFVFDAVTDVIIK	Unmodified	1706.9243	0.92432245	478;415	sp|P08754|GNAI3_HUMAN;sp|P63096-2|GNAI1_HUMAN;sp|P63096|GNAI1_HUMAN;sp|P04899-6|GNAI2_HUMAN;sp|P04899-3|GNAI2_HUMAN;sp|P04899-5|GNAI2_HUMAN;sp|P04899-2|GNAI2_HUMAN;sp|P04899|GNAI2_HUMAN	no	no	0	0	0	0	0			2							54.218	54.218	2;3	0.00089818	15532	20190821_JH_WT_Ubi	109.15	56.755	2491300	0	0	2491300	0	0	0	0	0	0			3726	478;415	3262	10470;10471	11015;11016	11016				1
NVQFVFDAVTDVIIKNNLK	GlyGly (K)	2290.2321	0.23213179	478;415	sp|P08754|GNAI3_HUMAN;sp|P63096-2|GNAI1_HUMAN;sp|P63096|GNAI1_HUMAN;sp|P04899-6|GNAI2_HUMAN;sp|P04899-3|GNAI2_HUMAN;sp|P04899-5|GNAI2_HUMAN;sp|P04899-2|GNAI2_HUMAN;sp|P04899|GNAI2_HUMAN	no	no	0	0	1	0	1		1	1							52.685	52.685	3	0.0057877	14866	20190821_JH_WT_Ubi	64.454	40.413	2986600	0	562880	2423700	0	0	0	0	0	0			3727	478;415	3263	10472;10473	11017;11018	11018		380;381		2
NVTANDLQENITK	GlyGly (K);2 Deamidation (NQ)	1574.7424	0.74239491	1313	sp|Q14CB8-7|RHG19_HUMAN;sp|Q14CB8-3|RHG19_HUMAN;sp|Q14CB8|RHG19_HUMAN;sp|Q14CB8-2|RHG19_HUMAN	yes	no	0	2	1	0	0								1		31.393	31.393	2	0.027768	8847	20190902_JH_WT_Ubi_2	60.518	22.432	0	0	0	0	0	0	0	0	0	0			3728	1313	3264	10474	11019	11019	420;1034	1372		1
NVTDVVNTCHDAGISKK	GlyGly (K)	1970.948	0.94798779	2224	sp|Q9Y3I0|RTCB_HUMAN	yes	yes	0	0	1	0	1		1				1	1	1		24.911	24.911	3	0.0020781	5614	20190902_JH_MUT_Ubi_2	82.663	60.509	12695000	0	2237100	0	0	0	3750600	2099300	4607500	0			3729	2224	3265	10475;10476;10477;10478	11020;11021;11022;11023	11021		2070;2071		4
NVTLCGHLHHGK	Unmodified	1371.683	0.68298674	1317	sp|Q15029-2|U5S1_HUMAN;sp|Q15029-3|U5S1_HUMAN;sp|Q15029|U5S1_HUMAN	yes	no	0	0	0	0	0			1			1				16.592	16.592	3	0.010089	3009	20190821_JH_WT_Ubi	75.566	45.002	25500000	0	0	18441000	0	0	7058200	0	0	0			3730	1317	3266	10479;10480	11024;11025	11025				2
NVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNK	GlyGly (K);3 Deamidation (NQ)	3881.8728	0.87282333	1823	sp|Q96T21-2|SEBP2_HUMAN;sp|Q96T21-3|SEBP2_HUMAN;sp|Q96T21|SEBP2_HUMAN	yes	no	0	3	1	0	2					1					50.205	50.205	3	0.0042319	12267	20190902_JH_EV_Ubi_3	40.328	25.282	657910	0	0	0	0	657910	0	0	0	0			3731	1823	3267	10481	11026	11026	584;585;586	1786		1
NVVAECLGKLTLIDPETLLPR	GlyGly (K)	2464.3359	0.33594493	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN	yes	no	0	0	1	0	1			1							52.347	52.347	3	1.3799E-06	14802	20190821_JH_WT_Ubi	102.07	55.607	3182400	0	0	3182400	0	0	0	0	0	0			3732	1557	3268	10482	11027	11027		1545		1
NWVKELQR	GlyGly (K)	1185.6255	0.62545508	915	sp|P51148|RAB5C_HUMAN;sp|P51148-2|RAB5C_HUMAN;sp|P20339-2|RAB5A_HUMAN;sp|P20339|RAB5A_HUMAN	yes	no	0	0	1	0	1		1				1	1			27.243	27.243	3	0.0088618	5986	20190902_JH_MUT_Ubi_3	90.601	46.966	5778100	0	2085200	0	0	0	3692900	0	0	0			3733	915	3269	10483;10484;10485	11028;11029;11030	11030		879		3
NYDIGAALDTIQYSKHPPPL	GlyGly (K)	2326.1594	0.15936077	1246	sp|Q13501-2|SQSTM_HUMAN;sp|Q13501|SQSTM_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	44.615	44.615	3	1.3029E-06	11895	20190821_JH_WT_Ubi	116.04	81.319	79052000	6070200	10415000	17887000	2423000	2679900	6811500	8797700	8202100	15766000			3734	1246	3270	10486;10487;10488;10489;10490;10491;10492;10493;10494	11031;11032;11033;11034;11035;11036;11037;11038;11039	11037		1317		9
NYEASVDSLTFSVVTGPAPSQEAGTK	Unmodified	2654.2712	0.27115565	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	45.837	45.837	3	2.4593E-90	13888	20190902_JH_WT_Ubi_2	225.66	158.89	133140000	5809400	7388200	51545000	1090400	1076900	3600900	5493400	28922000	28210000			3735	645	3271	10495;10496;10497;10498;10499;10500;10501;10502;10503	11040;11041;11042;11043;11044;11045;11046;11047;11048;11049;11050	11049				11
NYEASVDSLTFSVVTGPAPSQEAGTKAR	GlyGly (K)	2995.4523	0.45230791	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	1	0	1		1	1							41.335	41.335	3	9.2185E-16	10453	20190821_JH_WT_Ubi	113.23	84.817	5094500	0	1166200	3928300	0	0	0	0	0	0			3736	645	3272	10504;10505	11051;11052	11052		619		2
NYGSYSTQASAAAATAELLKK	GlyGly (K)	2258.1179	0.11788989	157	sp|O14828-2|SCAM3_HUMAN;sp|O14828|SCAM3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	36.643	36.643	3	2.1517E-67	8650	20190821_JH_WT_Ubi	207.54	167.55	981560000	83827000	130700000	180410000	69077000	46245000	115000000	85809000	109110000	161390000			3737	157	3273	10506;10507;10508;10509;10510;10511;10512;10513;10514	11053;11054;11055;11056;11057;11058;11059;11060;11061	11059		129;130		9
NYGSYSTQASAAAATAELLKK	GlyGly (K);Deamidation (NQ)	2259.1019	0.10190547	157	sp|O14828-2|SCAM3_HUMAN;sp|O14828|SCAM3_HUMAN	yes	no	0	1	1	0	1			1	1	1	1	1	1	1	39.09	39.09	3	1.7027E-15	9706	20190902_JH_MUT_Ubi_3	143.33	111	52765000	0	0	9163400	4237900	2423000	9972600	9696600	8665100	8606100			3738	157	3273	10515;10516;10517;10518;10519;10520;10521	11062;11063;11064;11065;11066;11067;11068	11065	57;761	129;130		7
NYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKK	GlyGly (K)	3936.8615	0.86153036	956	sp|P53990-6|IST1_HUMAN;sp|P53990-2|IST1_HUMAN;sp|P53990-3|IST1_HUMAN;sp|P53990|IST1_HUMAN;sp|P53990-4|IST1_HUMAN;sp|P53990-5|IST1_HUMAN	yes	no	0	0	1	0	1		1								52.003	52.003	3	0.0046562	13762	20190821_JH_MUT_Ubi	45.56	24.826	1425800	0	1425800	0	0	0	0	0	0	0			3739	956	3274	10522	11069	11069		921;922		1
NYQQNYQNSESGEKNEGSESAPEGQAQQR	GlyGly (K)	3370.4319	0.43185983	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	1	0	1	1				1	1		1	1	22.308	22.308	3	9.2631E-21	4942	20190902_JH_MUT_Ubi_2	126.16	108.54	7758200	2568400	0	0	0	1091800	1850500	0	2247600	0			3740	1090	3275	10523;10524;10525;10526;10527	11070;11071;11072;11073;11074;11075	11072		1085		6
NYQQNYQNSESGEKNEGSESAPEGQAQQR	GlyGly (K);Deamidation (NQ)	3371.4159	0.41587542	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	1	1	0	1						1	1			22.81	22.81	3	1.3269E-05	4880	20190902_JH_MUT_Ubi_3	89.079	68.427	1172000	0	0	0	0	0	608900	563080	0	0			3741	1090	3275	10528;10529	11076;11077;11078	11077	355	1085		3
NYYEQWGKLTDCVVMR	Oxidation (M);GlyGly (K)	2190.9827	0.98265874	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	1	1	1		1	1							39.593	39.593	3	0.0014141	9369	20190821_JH_MUT_Ubi	91.657	67.614	6292600	0	2222900	4069700	0	0	0	0	0	0			3742	653	3276	10530;10531	11079;11080	11079		629	408	2
NYYEQWGKLTDCVVMR	GlyGly (K)	2174.9877	0.98774411	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	1	0	1		1								41.739	41.739	3	0.011228	10216	20190821_JH_MUT_Ubi	65.231	37.142	1706600	0	1706600	0	0	0	0	0	0	0			3743	653	3276	10532	11081	11081		629		1
PAAGAEVPESVFLHLGR	Unmodified	1748.921	0.9209684	1149	sp|Q03169|TNAP2_HUMAN	yes	yes	0	0	0	0	0			1							41.422	41.422	3	0.02782	10557	20190821_JH_WT_Ubi	45.14	18.549	2134000	0	0	2134000	0	0	0	0	0	0			3744	1149	3277	10533	11082	11082				1
PAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR	Oxidation (M)	3158.5859	0.58590504	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN	yes	no	0	0	0	1	0	1				1					51.013	51.013	3	8.7643E-06	12346	20190902_JH_EV_Ubi_3	74.029	50.354	1383800	744290	0	0	0	639500	0	0	0	0			3745	2005	3278	10534;10535	11083;11084	11084			1081	2
PAAQKSPSDLLDASAVSATSR	GlyGly (K)	2185.0975	0.097488798	249	sp|O60499-2|STX10_HUMAN;sp|O60499|STX10_HUMAN	yes	no	0	0	1	0	1		1								34.224	34.224	3	0.0031438	7436	20190821_JH_MUT_Ubi	65.25	39.425	912060	0	912060	0	0	0	0	0	0	0			3746	249	3279	10536	11085	11085		226		1
PAASITSKPATLTTTSATSK	GlyGly (K)	2047.0797	0.079713469	211	sp|O43670-3|ZN207_HUMAN;sp|O43670-2|ZN207_HUMAN;sp|O43670|ZN207_HUMAN;sp|O43670-4|ZN207_HUMAN	yes	no	0	0	1	0	1					1	1	1			26.719	26.719	3	0.0002845	5927	20190902_JH_MUT_Ubi_3	85.166	54.168	2877400	0	0	0	0	614490	958750	1304200	0	0			3747	211	3280	10537;10538;10539	11086;11087;11088	11088		191		3
PAAVAAENEEIGSHIK	Unmodified	1634.8264	0.82639932	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0									1	26.579	26.579	3	7.3867E-33	6963	20190902_JH_WT_Ubi_3	188.19	153.44	7609900	0	0	0	0	0	0	0	0	7609900			3748	2230	3281	10540	11089	11089				1
PAAVVAPITTGYTVK	Unmodified	1486.8395	0.83953018	1979	sp|Q9HB71-3|CYBP_HUMAN;sp|Q9HB71|CYBP_HUMAN	yes	no	0	0	0	0	0					1					36.794	36.794	2	0.018573	9101	20190902_JH_EV_Ubi_3	64.82	41.808	1689500	0	0	0	0	1689500	0	0	0	0			3749	1979	3282	10541	11090	11090				0
PADAVYGQKEIHR	GlyGly (K)	1596.8009	0.80085327	1228	sp|Q13283|G3BP1_HUMAN;sp|Q13283-2|G3BP1_HUMAN	yes	no	0	0	1	0	1						1				20.783	20.783	4	0.027831	4577	20190902_JH_MUT_Ubi_2	53.967	39.405	2050000	0	0	0	0	0	2050000	0	0	0			3750	1228	3283	10542	11091	11091		1296		0
PAEAPTAPSPAQTLENSEPAPVSQLQSR	Unmodified	2872.4203	0.4202795	2125	sp|Q9UHD8-3|SEPT9_HUMAN;sp|Q9UHD8-7|SEPT9_HUMAN;sp|Q9UHD8-2|SEPT9_HUMAN;sp|Q9UHD8-5|SEPT9_HUMAN;sp|Q9UHD8|SEPT9_HUMAN	yes	no	0	0	0	0	0	1		1	1	1				1	40.166	40.166	3	9.0396E-12	11506	20190902_JH_WT_Ubi_3	110.44	67.827	14485000	981700	0	7368600	1149200	760890	0	0	0	4224200			3751	2125	3284	10543;10544;10545;10546;10547	11092;11093;11094;11095;11096	11096				5
PAEAPTAPSPAQTLENSEPAPVSQLQSR	Deamidation (NQ)	2873.4043	0.40429509	2125	sp|Q9UHD8-3|SEPT9_HUMAN;sp|Q9UHD8-7|SEPT9_HUMAN;sp|Q9UHD8-2|SEPT9_HUMAN;sp|Q9UHD8-5|SEPT9_HUMAN;sp|Q9UHD8|SEPT9_HUMAN	yes	no	0	1	0	0	0								1		39.67	39.67	3	0.0013747	11716	20190902_JH_WT_Ubi_2	66.017	31.359	0	0	0	0	0	0	0	0	0	0			3752	2125	3284	10548	11097	11097	676			1
PAEFTIDTK	Unmodified	1020.5128	0.51277632	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0				1						30.589	30.589	2	0.0056871	7145	20190902_JH_EV_Ubi_2	109.48	65.362	1561800	0	0	0	1561800	0	0	0	0	0			3753	282	3285	10549	11098	11098				1
PAEKPAETPVATSPTATDSTSGDSSR	GlyGly (K)	2673.2366	0.23656105	964	sp|P54727|RD23B_HUMAN;sp|P54727-2|RD23B_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1		25.281	25.281	3	6.8671E-139	5450	20190902_JH_MUT_Ubi_3	257.2	201.29	210570000	0	18783000	25731000	20124000	54019000	23967000	16300000	51648000	0			3754	964	3286	10550;10551;10552;10553;10554;10555;10556	11099;11100;11101;11102;11103;11104;11105;11106	11104		937		8
PAEQSLDMEEKDYSEADGLSER	Oxidation (M);GlyGly (K)	2628.1133	0.11333438	1953	sp|Q9H4G0|E41L1_HUMAN	yes	yes	0	0	1	1	1					1		1			31.217	31.217	3	1.1664E-15	7368	20190902_JH_EV_Ubi_3	138.46	109.32	2006100	0	0	0	0	855540	0	1150600	0	0			3755	1953	3287	10557;10558	11107;11108	11107		1886	1062	2
PAEQSLDMEEKDYSEADGLSER	GlyGly (K)	2612.1184	0.11841975	1953	sp|Q9H4G0|E41L1_HUMAN	yes	yes	0	0	1	0	1		1					1			33.288	33.288	3	9.617E-06	7214	20190821_JH_MUT_Ubi	90.978	55.556	1628600	0	1075100	0	0	0	0	553510	0	0			3756	1953	3287	10559;10560	11109;11110	11109		1886		2
PAEQTPLTALYLGSLIK	Unmodified	1814.019	0.018951113	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	52.507	52.507	3	6.3172E-26	15215	20190902_JH_WT_Ubi_3	178.02	112.55	29264000	0	1480300	11035000	0	0	1290600	2088900	4982600	8386000			3757	865	3288	10561;10562;10563;10564;10565;10566	11111;11112;11113;11114;11115;11116	11116				6
PAETPVATSPTATDSTSGDSSR	Unmodified	2133.9662	0.96619985	964	sp|P54727|RD23B_HUMAN;sp|P54727-2|RD23B_HUMAN	yes	no	0	0	0	0	0			1							26.899	26.899	2	9.0032E-08	5347	20190821_JH_WT_Ubi	116.96	82.277	4075300	0	0	4075300	0	0	0	0	0	0			3758	964	3289	10567	11117	11117				0
PAGGPKPPSGKK	GlyGly (K)	1233.683	0.68296996	912	sp|P50990|TCPQ_HUMAN;sp|P50990-2|TCPQ_HUMAN;sp|P50990-3|TCPQ_HUMAN	yes	no	0	0	1	0	2			1							9.8488	9.8488	3	0.037186	1910	20190821_JH_WT_Ubi	99.788	65.095	1260400	0	0	1260400	0	0	0	0	0	0			3759	912	3290	10568	11118	11118				1
PAGPAGDEPAESPSETPGPSPAGPTR	Unmodified	2428.1143	0.11426107	2076	sp|Q9NZT2-2|OGFR_HUMAN;sp|Q9NZT2|OGFR_HUMAN	yes	no	0	0	0	0	0								1		30.157	30.157	3	0.0094067	8388	20190902_JH_WT_Ubi_2	57.945	26.989	0	0	0	0	0	0	0	0	0	0			3760	2076	3291	10569	11119	11119				1
PAGPPGILALLDEECWFPK	Unmodified	2109.0605	0.060498352	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0								1		56.601	56.601	3	2.7084E-14	16593	20190902_JH_WT_Ubi_2	146.1	117.47	1373300	0	0	0	0	0	0	0	1373300	0			3761	776	3292	10570	11120	11120				1
PAGSVQNPVYHNQPLNPAPSR	Unmodified	2242.1243	0.12431267	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	0	0	0	1			1	1					28.647	28.647	3	3.3076E-56	6483	20190902_JH_EV_Ubi_2	201.61	172.99	8383300	3942000	0	0	2554900	1886400	0	0	0	0			3762	382	3293	10571;10572;10573	11121;11122;11123;11124	11123				4
PAHSLVMSSPALPAFLLCSTLLVIK	Oxidation (M)	2680.4696	0.46960164	148	sp|O14684|PTGES_HUMAN	yes	yes	0	0	0	1	0			1					1	1	54.545	54.545	3	1.5651E-12	15670	20190902_JH_WT_Ubi_3	119.41	94.864	32522000	0	0	27242000	0	0	0	0	1685200	3595300			3763	148	3294	10574;10575;10576	11125;11126;11127;11128	11127			65	4
PAHSLVMSSPALPAFLLCSTLLVIK	Unmodified	2664.4747	0.47468702	148	sp|O14684|PTGES_HUMAN	yes	yes	0	0	0	0	0			1							55.281	55.281	3	0.00068321	15881	20190821_JH_WT_Ubi	68.406	37.127	8112500	0	0	8112500	0	0	0	0	0	0			3764	148	3294	10577	11129	11129				1
PAHSQNQSNFSSYSSK	Unmodified	1767.7812	0.78124004	1174	sp|Q07157-2|ZO1_HUMAN;sp|Q07157|ZO1_HUMAN	yes	no	0	0	0	0	0								1		19.212	19.212	3	0.011957	4776	20190902_JH_WT_Ubi_2	60.246	28.898	1821000	0	0	0	0	0	0	0	1821000	0			3765	1174	3295	10578	11130	11130				1
PAHVVVGDVLQAADVDK	Unmodified	1731.9155	0.91554867	722	sp|P30043|BLVRB_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1			1	1	36.186	36.186	3	4.3087E-10	8546	20190821_JH_WT_Ubi	135.72	75.554	27944000	0	0	11588000	1445300	1987200	0	0	5876000	7047000			3766	722	3296	10579;10580;10581;10582;10583;10584	11131;11132;11133;11134;11135;11136	11134				6
PALAPPFIVISHLR	Unmodified	1529.9082	0.90821887	1680	sp|Q8TD43-2|TRPM4_HUMAN;sp|Q8TD43-3|TRPM4_HUMAN;sp|Q8TD43|TRPM4_HUMAN	yes	no	0	0	0	0	0			1							45.556	45.556	3	0.0037793	12256	20190821_JH_WT_Ubi	81.709	65.09	1386600	0	0	1386600	0	0	0	0	0	0			3767	1680	3297	10585	11137	11137				1
PALDTGYETEQDTITSKVPTDR	GlyGly (K)	2550.2086	0.20855539	1731	sp|Q92854|SEM4D_HUMAN	yes	yes	0	0	1	0	1	1									35.029	35.029	3	0.0020011	8386	20190821_JH_EV_Ubi	68.134	27.411	659900	659900	0	0	0	0	0	0	0	0			3768	1731	3298	10586	11138	11138		1726		1
PALLHSTFFPALQGAQTK	Unmodified	1926.0363	0.036332512	661	sp|P23381-2|SYWC_HUMAN;sp|P23381|SYWC_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	40.955	40.955	3	8.6695E-21	10416	20190821_JH_WT_Ubi	169.15	120.52	119590000	13181000	11976000	30864000	7650800	6475800	15510000	7802700	12097000	14033000			3769	661	3299	10587;10588;10589;10590;10591;10592;10593;10594;10595	11139;11140;11141;11142;11143;11144;11145;11146;11147	11145				9
PALLHSTFFPALQGAQTK	Deamidation (NQ)	1927.0203	0.020348097	661	sp|P23381-2|SYWC_HUMAN;sp|P23381|SYWC_HUMAN	yes	no	0	1	0	0	0					1					41.417	41.417	3	0.018646	10467	20190902_JH_EV_Ubi_3	73.279	43.172	1197000	0	0	0	0	1197000	0	0	0	0			3770	661	3299	10596	11148	11148	880			1
PAMAPGSSHLGAPASTTTAADATPSGSLAR	Oxidation (M)	2766.3243	0.32427062	1863	sp|Q9BR76|COR1B_HUMAN	yes	yes	0	0	0	1	0			1					1	1	29.826	29.826	3	3.4402E-32	8354	20190902_JH_WT_Ubi_2	153.83	122.4	11169000	0	0	1878800	0	0	0	0	4055400	5234700			3771	1863	3300	10597;10598;10599	11149;11150;11151;11152	11151			1023	4
PAPAVGEAEDKENQQATSGPNQPSVR	GlyGly (K)	2790.3169	0.31687706	593	sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN;sp|P16989-3|YBOX3_HUMAN	yes	no	0	0	1	0	1			1							26.08	26.08	3	0.0011023	5169	20190821_JH_WT_Ubi	64.013	43.587	1198500	0	0	1198500	0	0	0	0	0	0			3772	593	3301	10600	11153	11153		581		1
PAPVAQPPAAAPPSAVGSSAAAPR	Unmodified	2137.128	0.12800107	1439	sp|Q9Y6H1|CHCH2_HUMAN;sp|Q5T1J5|CHCH9_HUMAN	yes	no	0	0	0	0	0								1	1	33.122	33.122	3	0.0010314	9071	20190902_JH_WT_Ubi_3	66.732	35.758	7147800	0	0	0	0	0	0	0	3457800	3690000			3773	1439	3302	10601;10602	11154;11155	11155				2
PASPTPVIVASHTANK	Unmodified	1588.8573	0.85730551	777	sp|P35606-2|COPB2_HUMAN;sp|P35606|COPB2_HUMAN	yes	no	0	0	0	0	0	1							1		26.001	26.001	3	0.022532	4964	20190821_JH_EV_Ubi	50.158	19.608	4656500	994150	0	0	0	0	0	0	3662300	0			3774	777	3303	10603;10604	11156;11157	11156				2
PASTNSDDVRDEK	Unmodified	1432.643	0.64301522	525	sp|P11413|G6PD_HUMAN;sp|P11413-3|G6PD_HUMAN;sp|P11413-2|G6PD_HUMAN	yes	no	0	0	0	0	1			1							13.988	13.988	3	0.035855	2642	20190821_JH_WT_Ubi	80.318	34.439	1280800	0	0	1280800	0	0	0	0	0	0			3775	525	3304	10605	11158	11158				1
PATFTVNTK	Unmodified	977.5182	0.51819605	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0						1				25.57	25.57	2	0.016764	5821	20190902_JH_MUT_Ubi_2	101.25	69.949	6052100	0	0	0	0	0	6052100	0	0	0			3776	637	3305	10606	11159	11159				0
PATKMETEAHA	Oxidation (M);GlyGly (K)	1314.5874	0.5874146	209	sp|O43570-2|CAH12_HUMAN;sp|O43570|CAH12_HUMAN	yes	no	0	0	1	1	1								1		11.715	11.715	3	0.0037149	2746	20190902_JH_WT_Ubi_2	104.22	73.036	14278000	0	0	0	0	0	0	0	14278000	0			3777	209	3306	10607	11160	11160		190	85	1
PATKMETEAHA	GlyGly (K)	1298.5925	0.59249998	209	sp|O43570-2|CAH12_HUMAN;sp|O43570|CAH12_HUMAN	yes	no	0	0	1	0	1								1	1	18.205	18.205	3	0.011952	4427	20190902_JH_WT_Ubi_3	84.687	41.969	7434600	0	0	0	0	0	0	0	2899800	4534800			3778	209	3306	10608;10609	11161;11162	11162		190		2
PAVCYQAITKK	GlyGly (K)	1391.7231	0.72312022	1413	sp|Q49A26-5|GLYR1_HUMAN;sp|Q49A26-4|GLYR1_HUMAN;sp|Q49A26-3|GLYR1_HUMAN;sp|Q49A26|GLYR1_HUMAN	yes	no	0	0	1	0	1		1								24.794	24.794	3	0.033318	4134	20190821_JH_MUT_Ubi	57.348	21.045	0	0	0	0	0	0	0	0	0	0			3779	1413	3307	10610	11163	11163				1
PAVNQIECHPYLTQEK	Unmodified	1925.9305	0.93054681	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	0	0			1					1	1	29.32	29.32	3	6.1189E-11	6109	20190821_JH_WT_Ubi	146.27	110.05	51593000	0	0	18582000	0	0	0	0	19209000	13802000			3780	563	3308	10611;10612;10613	11164;11165;11166;11167	11165				4
PAVTLLGNIHAVTK	Unmodified	1432.8402	0.84019889	2145	sp|Q9UJ83-3|HACL1_HUMAN;sp|Q9UJ83-4|HACL1_HUMAN;sp|Q9UJ83-2|HACL1_HUMAN;sp|Q9UJ83|HACL1_HUMAN	yes	no	0	0	0	0	0	1									35.612	35.612	3	0.008118	8593	20190821_JH_EV_Ubi	71.933	52.292	994040	994040	0	0	0	0	0	0	0	0			3781	2145	3309	10614	11168	11168				1
PAVVAPAPVVEAVSTPSAAFPSDATAENVK	Unmodified	2891.4917	0.49165353	1201	sp|Q12906-7|ILF3_HUMAN;sp|Q12906-4|ILF3_HUMAN;sp|Q12906-6|ILF3_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	46.952	46.952	3	4.4301E-26	14217	20190902_JH_WT_Ubi_2	142.32	102.18	15529000	1414200	0	4273100	703580	904820	0	0	3304300	4929000			3782	1201	3310	10615;10616;10617;10618;10619;10620	11169;11170;11171;11172;11173;11174;11175	11174				7
PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK	Unmodified	3287.7289	0.72892369	1200	sp|Q12906|ILF3_HUMAN;sp|Q12906-5|ILF3_HUMAN;sp|Q12906-2|ILF3_HUMAN;sp|Q12906-3|ILF3_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	50.015	50.015	3	9.6655E-33	15039	20190902_JH_WT_Ubi_2	136.83	106.29	12594000	1424400	0	4779300	692060	1002300	0	0	1806000	2889500			3783	1200	3311	10621;10622;10623;10624;10625;10626	11176;11177;11178;11179;11180;11181;11182;11183	11181				8
PCNHVLSLSFPIR	Unmodified	1538.8028	0.80276752	374	sp|P00367|DHE3_HUMAN;sp|P49448|DHE4_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	38.691	38.691	3	4.1821E-25	10983	20190902_JH_WT_Ubi_3	184.87	141.47	164760000	0	5286200	68150000	0	0	9837900	9896900	35606000	35985000			3784	374	3312	10627;10628;10629;10630;10631;10632	11184;11185;11186;11187;11188;11189;11190	11190				7
PCNHVLSLSFPIR	Deamidation (NQ)	1539.7868	0.78678311	374	sp|P00367|DHE3_HUMAN;sp|P49448|DHE4_HUMAN	yes	no	0	1	0	0	0								1		41.992	41.992	3	0.01025	12508	20190902_JH_WT_Ubi_2	85.271	50.521	2155800	0	0	0	0	0	0	0	2155800	0			3785	374	3312	10633	11191	11191	120			1
PCSEETPAISPSKR	GlyGly (K)	1671.7886	0.7886336	759	sp|P33316-2|DUT_HUMAN	yes	yes	0	0	1	0	1		1		1	1		1			22.135	22.135	3	0.00016494	4627	20190902_JH_EV_Ubi_3	117.03	60.616	16543000	0	1731500	0	4877000	3688400	0	6246200	0	0			3786	759	3313	10634;10635;10636;10637	11192;11193;11194;11195	11193		730		4
PCVSIWLQKSGTCPVCR	GlyGly (K)	2161.0231	0.023083763	192	sp|Q8NG27-2|PJA1_HUMAN;sp|Q8NG27-3|PJA1_HUMAN;sp|Q8NG27|PJA1_HUMAN;sp|O43164-2|PJA2_HUMAN;sp|O43164|PJA2_HUMAN	yes	no	0	0	1	0	1			1							35.795	35.795	3	0.0031507	8301	20190821_JH_WT_Ubi	74.772	47.439	3492600	0	0	3492600	0	0	0	0	0	0			3787	192	3314	10638	11196	11196		174		1
PDGSPVFIAFR	Unmodified	1204.6241	0.6240581	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN;sp|Q13740-3|CD166_HUMAN	yes	no	0	0	0	0	0									1	43.389	43.389	2	0.0013277	12661	20190902_JH_WT_Ubi_3	114.86	77.047	2431400	0	0	0	0	0	0	0	0	2431400			3788	1260	3315	10639	11197	11197				1
PDLQPGYEGWQALDPTPQEK	Unmodified	2268.0699	0.069877064	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	0								1	1	43.981	43.981	3	1.0818E-05	13271	20190902_JH_WT_Ubi_2	107.41	68.713	5851800	0	0	0	0	0	0	0	2781200	3070600			3789	645	3316	10640;10641	11198;11199	11198				2
PDPAKSAPAPK	GlyGly (K)	1191.6248	0.62478638	666	sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN	yes	no	0	0	1	0	1	1							1	1	17.698	17.698	3	0.011043	2979	20190821_JH_EV_Ubi	86.344	51.542	24836000	3265200	0	0	0	0	0	0	11448000	10122000			3790	666	3317	10642;10643;10644	11200;11201;11202	11200		637		3
PDQGIVIPLQYPVEKK	GlyGly (K);2 Deamidation (NQ)	1939.0302	0.030244081	263	sp|O60880-4|SH21A_HUMAN;sp|O60880|SH21A_HUMAN	yes	no	0	2	1	0	1	1									51.306	51.306	3	0.02946	13906	20190821_JH_EV_Ubi	50.305	22.455	668580	668580	0	0	0	0	0	0	0	0			3791	263	3318	10645	11203	11203	792;793	255;256		1
PDSFHSLTPTFAAVLVHIDNLR	Unmodified	2449.2754	0.27539358	347	sp|O95479|G6PE_HUMAN	yes	yes	0	0	0	0	0	1	1	1					1		49.968	49.968	4	7.0052E-07	14959	20190902_JH_WT_Ubi_2	99.409	68.298	32678000	6986500	2082800	16303000	0	0	0	0	7306300	0			3792	347	3319	10646;10647;10648;10649	11204;11205;11206;11207	11207				4
PEGNYAAIMGFILAHK	Unmodified	1730.8814	0.88141177	694	sp|P27338|AOFB_HUMAN;sp|P27338-2|AOFB_HUMAN	yes	no	0	0	0	0	0			1					1	1	48.651	48.651	3	6.6411E-19	14706	20190902_JH_WT_Ubi_2	160.63	120.15	6715100	0	0	4583400	0	0	0	0	1148100	983660			3793	694	3320	10650;10651;10652	11208;11209;11210	11209				3
PEKSIPEGLK	GlyGly (K)	1210.6558	0.65575216	37		yes	yes	0	0	1	0	1				1						25.883	25.883	3	0.025624	5622	20190902_JH_EV_Ubi_2	70.1	22.394	11155000	0	0	0	11155000	0	0	0	0	0	+		3794	37	3321	10653	11211	11211		48		1
PELQQQEQPEQKTNTPQQK	GlyGly (K)	2392.1619	0.16187997	1371	sp|Q15911-2|ZFHX3_HUMAN;sp|Q15911|ZFHX3_HUMAN	yes	no	0	0	1	0	1				1						43.505	43.505	3	0.019193	11057	20190902_JH_EV_Ubi_2	51.606	21.883	1507000	0	0	0	1507000	0	0	0	0	0			3795	1371	3322	10654	11212	11212		1411		1
PEMETDAVQMANEELRAKLTSIQIEFQQEK	Unmodified	3505.7069	0.70688439	1802	sp|Q96N16-7|JKIP1_HUMAN;sp|Q96N16|JKIP1_HUMAN;sp|Q96N16-3|JKIP1_HUMAN;sp|Q96N16-4|JKIP1_HUMAN;sp|Q96N16-5|JKIP1_HUMAN;sp|Q96N16-2|JKIP1_HUMAN	yes	no	0	0	0	0	2		1								49.662	49.662	6	0.036514	13056	20190821_JH_MUT_Ubi	16.4	3.7281	1414600	0	1414600	0	0	0	0	0	0	0			3796	1802	3323	10655	11213	11213				1
PENILLDEIGHIK	Deamidation (NQ)	1490.7981	0.7980593	2148	sp|Q9UK32-2|KS6A6_HUMAN;sp|Q9UK32|KS6A6_HUMAN	yes	no	0	1	0	0	0		1								45.956	45.956	3	0.018272	11860	20190821_JH_MUT_Ubi	76.326	34.943	1174000	0	1174000	0	0	0	0	0	0	0			3797	2148	3324	10656	11214	11214	685			1
PEPAKSAPAPK	GlyGly (K)	1205.6404	0.64043645	261	sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN	yes	no	0	0	1	0	1			1					1		16.928	16.928	3	0.019354	4097	20190902_JH_WT_Ubi_2	77.124	41.18	0	0	0	0	0	0	0	0	0	0			3798	261	3325	10657;10658	11215;11216	11216		253		2
PEPTKSAPAPK	GlyGly (K)	1235.651	0.65100113	995	sp|P58876|H2B1D_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1		16.995	16.995	3	0.0072099	3576	20190902_JH_EV_Ubi_2	93.561	49.791	51358000	0	2659600	8672000	5852300	4484100	10843000	5485900	13361000	0			3799	995	3326	10659;10660;10661;10662;10663;10664;10665;10666	11217;11218;11219;11220;11221;11222;11223;11224	11218		974		8
PFCVILPEIQKPER	Unmodified	1724.9284	0.92836197	1027	sp|P61619|S61A1_HUMAN	yes	yes	0	0	0	0	1	1		1							40.673	40.673	3	0.00187	10189	20190821_JH_WT_Ubi	109.15	79.34	4726600	0	0	4726600	0	0	0	0	0	0			3800	1027	3327	10667;10668	11225;11226	11226				2
PFDLKSVPLATAPMAEQR	Oxidation (M);GlyGly (K)	2100.0674	0.067374644	2254	sp|Q9Y678|COPG1_HUMAN	yes	yes	0	0	1	1	1									1	37.947	37.947	3	0.033936	10827	20190902_JH_WT_Ubi_3	48.907	16.219	3235600	0	0	0	0	0	0	0	0	3235600			3801	2254	3328	10669	11227	11227				1
PFESSSSIGAEKPR	GlyGly (K)	1604.7794	0.77944912	1333	sp|Q15154-4|PCM1_HUMAN;sp|Q15154-2|PCM1_HUMAN;sp|Q15154-5|PCM1_HUMAN;sp|Q15154|PCM1_HUMAN	yes	no	0	0	1	0	1		1					1			24.349	24.349	3	0.00013983	5203	20190902_JH_MUT_Ubi_3	116.71	80.035	2375100	0	1111600	0	0	0	0	1263500	0	0			3802	1333	3329	10670;10671	11228;11229	11229		1390		2
PFETLLSQNQGGK	Unmodified	1417.7201	0.72014333	484	sp|P09211|GSTP1_HUMAN	yes	yes	0	0	0	0	0				1						35.011	35.011	2	0.013923	8507	20190902_JH_EV_Ubi_2	72.848	14.618	921390	0	0	0	921390	0	0	0	0	0			3803	484	3330	10672	11230	11230				0
PFFHSLSEK	Unmodified	1090.5447	0.54474515	510	sp|P10599|THIO_HUMAN	yes	yes	0	0	0	0	0		1	2	1			1	1	1	27.203	27.203	2;3	1.6856E-10	4980	20190821_JH_MUT_Ubi	125.31	78.944	276920000	0	0	75645000	1099100	0	0	3172000	87521000	109480000			3804	510	3331	10673;10674;10675;10676;10677;10678;10679	11231;11232;11233;11234;11235;11236;11237	11232				7
PFGVALLFGGVDEK	Unmodified	1447.7711	0.77111627	706	sp|P28066-2|PSA5_HUMAN;sp|P28066|PSA5_HUMAN	yes	no	0	0	0	0	0			1							52.012	52.012	2	0.025586	14767	20190821_JH_WT_Ubi	62.166	41.863	21547000	0	0	21547000	0	0	0	0	0	0			3805	706	3332	10680	11238	11238				1
PFHFQISNPEFAFLR	Unmodified	1848.9311	0.93113916	617	sp|P19174|PLCG1_HUMAN;sp|P19174-2|PLCG1_HUMAN	yes	no	0	0	0	0	0								1		47.049	47.049	3	0.0025521	14194	20190902_JH_WT_Ubi_2	82.578	54.227	2905000	0	0	0	0	0	0	0	2905000	0			3806	617	3333	10681	11239	11239				1
PFITYHNELDMNLYMR	2 Oxidation (M)	2087.9445	0.94448232	1321	sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN	yes	no	0	0	0	2	0								1		37.497	37.497	3	0.0032636	11025	20190902_JH_WT_Ubi_2	75.102	20.204	3159400	0	0	0	0	0	0	0	3159400	0			3807	1321	3334	10682	11240	11240			827;828	1
PFLELDTNLPANR	Unmodified	1498.778	0.77799256	87	sp|P30046-2|DOPD_HUMAN;sp|P30046|DOPD_HUMAN;sp|A6NHG4|DDTL_HUMAN	yes	no	0	0	0	0	0							1			42.671	42.671	2	0.00013818	11221	20190902_JH_MUT_Ubi_3	125.74	67.882	2408900	0	0	0	0	0	0	2408900	0	0			3808	87	3335	10683	11241	11241				1
PFLHAFFIDLEGCIR	Unmodified	1833.9236	0.92361094	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0		1	1							50.61	50.61	3	1.1089E-74	14184	20190821_JH_WT_Ubi	232.78	131.39	17012000	0	3944900	13067000	0	0	0	0	0	0			3809	865	3336	10684;10685	11242;11243	11243				2
PFPWGDGNHTLFHNPHVNPLPTGYEDE	Unmodified	3086.3947	0.39473345	531	sp|P12074|CX6A1_HUMAN	yes	yes	0	0	0	0	0			1						1	43.13	43.13	4	0.0059544	11332	20190821_JH_WT_Ubi	47.728	22.707	32308000	0	0	22316000	0	0	0	0	0	9992000			3810	531	3337	10686;10687	11244;11245	11244				2
PFSNSKVECQAQAR	GlyGly (K)	1734.8108	0.81076603	664	sp|P23497-7|SP100_HUMAN;sp|P23497-6|SP100_HUMAN;sp|P23497-5|SP100_HUMAN;sp|P23497-2|SP100_HUMAN;sp|P23497-3|SP100_HUMAN;sp|P23497|SP100_HUMAN;sp|P23497-4|SP100_HUMAN	yes	no	0	0	1	0	1	1			1						21.305	21.305	3	2.2628E-07	4435	20190902_JH_EV_Ubi_2	141.37	70.482	3533200	2271000	0	0	1262200	0	0	0	0	0			3811	664	3338	10688;10689	11246;11247	11247		635		2
PFTCLDGSATIPFDQVNDDYCDCK	Unmodified	2837.1619	0.16188125	552	sp|P14314-2|GLU2B_HUMAN;sp|P14314|GLU2B_HUMAN	yes	no	0	0	0	0	0									1	46.953	46.953	3	1.7094E-12	13815	20190902_JH_WT_Ubi_3	126.9	103.41	1617000	0	0	0	0	0	0	0	0	1617000			3812	552	3339	10690	11248	11248				1
PFVPNVHAAEFVPSFLR	Unmodified	1926.0152	0.015203139	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|Q8IYD1|ERF3B_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	46.893	46.893	3	9.1096E-08	13710	20190902_JH_WT_Ubi_3	124.68	97.894	105090000	0	18646000	26970000	0	0	18371000	11226000	12067000	17811000			3813	566	3340	10691;10692;10693;10694;10695;10696	11249;11250;11251;11252;11253;11254;11255	11255				7
PGAAMVEMADGYAVDR	2 Oxidation (M)	1683.7233	0.72325615	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	0	2	0									1	29.458	29.458	2	1.8298E-05	7854	20190902_JH_WT_Ubi_3	114.72	82.197	2732500	0	0	0	0	0	0	0	0	2732500			3814	559	3341	10697	11256	11256			348;349	1
PGAHLTVK	Unmodified	821.47594	0.4759373	492;931	sp|P51991-2|ROA3_HUMAN;sp|P51991|ROA3_HUMAN;sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	no	no	0	0	0	0	0		1								16.783	16.783	1	0.033768	2527	20190821_JH_MUT_Ubi	41.502	5.3167	281040	0	281040	0	0	0	0	0	0	0			3815	931;492	3342	10698	11257	11257				1
PGCFIAGADINMLAACK	Unmodified	1807.8419	0.8419315	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0							1			44.615	44.615	2	0.0067598	11859	20190902_JH_MUT_Ubi_3	70.488	29.973	700910	0	0	0	0	0	0	700910	0	0			3816	818	3343	10699	11258	11258				1
PGCFIAGADINMLAACK	Oxidation (M)	1823.8368	0.83684612	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	1	0								1	1	41.339	41.339	3	0.021402	11858	20190902_JH_WT_Ubi_3	58.079	18.86	1606700	0	0	0	0	0	0	0	1087400	519380			3817	818	3343	10700;10701	11259;11260	11260			521	0
PGCVNLSLHGIVEDR	Unmodified	1664.8304	0.83043884	1604	sp|Q8N163-2|CCAR2_HUMAN;sp|Q8N163|CCAR2_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	35.387	35.387	3	0.00050115	8177	20190821_JH_WT_Ubi	102.5	70.591	14620000	2286700	1927100	3218300	0	0	2003400	1585700	1861200	1737600			3818	1604	3344	10702;10703;10704;10705;10706;10707;10708	11261;11262;11263;11264;11265;11266;11267;11268	11266				8
PGEGHLDALLR	Unmodified	1176.6251	0.62512073	983	sp|P55786-2|PSA_HUMAN;sp|P55786|PSA_HUMAN	yes	no	0	0	0	0	0			1				1	1	1	30.869	30.869	3	0.0020866	8344	20190902_JH_WT_Ubi_3	104.43	64.586	23706000	0	0	7855800	0	0	0	997120	7695400	7157200			3819	983	3345	10709;10710;10711;10712	11269;11270;11271;11272	11272				4
PGETQVISYEMLHVTPPMSPPDVLK	2 Oxidation (M);Deamidation (NQ)	2797.3554	0.35541932	2263	sp|Q9Y6N5|SQOR_HUMAN	yes	yes	0	1	0	2	0								1		42.496	42.496	3	0.032949	12676	20190902_JH_WT_Ubi_2	42.863	16.928	0	0	0	0	0	0	0	0	0	0			3820	2263	3346	10713	11273	11273	1342			1
PGEYFVNILFEEVHIPGSPFK	Unmodified	2418.226	0.22598378	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0		1								54.764	54.764	3	0.00030783	14628	20190821_JH_MUT_Ubi	77.899	51.661	1975300	0	1975300	0	0	0	0	0	0	0			3821	282	3347	10714	11274	11274				1
PGFESGTKQGSPGAYDR	GlyGly (K)	1866.8497	0.84965395	122	sp|O00308|WWP2_HUMAN;sp|O00308-3|WWP2_HUMAN;sp|O00308-2|WWP2_HUMAN	yes	no	0	0	1	0	1				1						23.2	23.2	3	0.025547	4902	20190902_JH_EV_Ubi_2	59.15	31.888	0	0	0	0	0	0	0	0	0	0			3822	122	3348	10715	11275	11275		110		1
PGGFLVIMDALK	Unmodified	1259.6948	0.6947802	810	sp|P40261|NNMT_HUMAN	yes	yes	0	0	0	0	0			1							52.111	52.111	2	0.013357	14678	20190821_JH_WT_Ubi	75.294	50.439	76525000	0	0	76525000	0	0	0	0	0	0			3823	810	3349	10716	11276	11276				0
PGGFLVIMDALK	Oxidation (M)	1275.6897	0.68969482	810	sp|P40261|NNMT_HUMAN	yes	yes	0	0	0	1	0			1							52.106	52.106	2	0.0071344	14704	20190821_JH_WT_Ubi	82.417	39.699	2539000	0	0	2539000	0	0	0	0	0	0			3824	810	3349	10717	11277	11277			517	0
PGGGPGLSTPGGHPKPPHR	Unmodified	1801.9336	0.93359877	658	sp|P23246-2|SFPQ_HUMAN;sp|P23246|SFPQ_HUMAN	yes	no	0	0	0	0	1			1							19.62	19.62	5	0.0092128	3589	20190821_JH_WT_Ubi	53.924	34.346	5640600	0	0	5640600	0	0	0	0	0	0			3825	658	3350	10718	11278	11278				1
PGGLLLGDVAPNFEANTTVGR	Unmodified	2097.0855	0.085467549	720	sp|P30041|PRDX6_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1		1	47.591	47.591	3	2.0503E-84	12521	20190821_JH_MUT_Ubi	218.11	158.77	71689000	8711900	0	22735000	4445100	4137500	7047600	5338400	0	19274000			3826	720	3351	10719;10720;10721;10722;10723;10724;10725;10726	11279;11280;11281;11282;11283;11284;11285;11286	11282				8
PGGVVHSFSHNVGPGDK	Unmodified	1689.8223	0.82231699	1748	sp|Q969H8|MYDGF_HUMAN	yes	yes	0	0	0	0	0			1					1	1	22.469	22.469	3;4	0.00013055	5693	20190902_JH_WT_Ubi_3	104.94	76.642	30190000	0	0	12042000	0	0	0	0	10307000	7841900			3827	1748	3352	10727;10728;10729	11287;11288;11289	11289				3
PGHLQEGFGCVVTNR	Unmodified	1669.7995	0.79947306	1637	sp|Q8NC51-4|PAIRB_HUMAN;sp|Q8NC51-3|PAIRB_HUMAN;sp|Q8NC51-2|PAIRB_HUMAN;sp|Q8NC51|PAIRB_HUMAN	yes	no	0	0	0	0	0	1		1	1				1	1	29.249	29.249	3	1.637E-15	6241	20190821_JH_EV_Ubi	164.7	118.97	56179000	5020200	0	15335000	3618000	0	0	0	20333000	11874000			3828	1637	3353	10730;10731;10732;10733;10734	11290;11291;11292;11293;11294	11290				5
PGISLATVSAVLHTK	Unmodified	1492.8613	0.86132826	2038	sp|Q9NV88-3|INT9_HUMAN;sp|Q9NV88-2|INT9_HUMAN;sp|Q9NV88|INT9_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	42.398	42.398	3	2.1588E-15	12053	20190902_JH_MUT_Ubi_2	162.67	129.44	11587000	0	1462600	4061200	0	0	1358500	1019800	1695600	1988900			3829	2038	3354	10735;10736;10737;10738;10739;10740	11295;11296;11297;11298;11299;11300	11296				6
PGLGQYLCNQLGLPFPCLCR	Unmodified	2362.1384	0.13844787	1481	sp|Q6P474|PDXD2_HUMAN;sp|Q6P996-3|PDXD1_HUMAN;sp|Q6P996-4|PDXD1_HUMAN;sp|Q6P996-5|PDXD1_HUMAN;sp|Q6P996|PDXD1_HUMAN	yes	no	0	0	0	0	0		1				1				53.877	53.877	3	0.00056543	14365	20190821_JH_MUT_Ubi	77.13	30.238	3472500	0	3012000	0	0	0	460490	0	0	0			3830	1481	3355	10741;10742	11301;11302	11301				2
PGLQTHGFIIR	Unmodified	1237.6931	0.69314072	1301	sp|Q14690|RRP5_HUMAN	yes	yes	0	0	0	0	0	1	1	1					1	1	31.651	31.651	3	0.00067033	6818	20190821_JH_WT_Ubi	119.34	80.553	18168000	663860	510550	4534300	0	0	0	0	6932000	5527000			3831	1301	3356	10743;10744;10745;10746;10747	11303;11304;11305;11306;11307	11305				5
PGLTIQAPQLEVSVPSANIEGLEGK	Unmodified	2546.3592	0.35918279	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1				50.104	50.104	3	2.4077E-13	14033	20190821_JH_WT_Ubi	122.47	65.057	17034000	2760100	4140600	8966300	0	0	1167500	0	0	0			3832	1190	3357	10748;10749;10750;10751	11308;11309;11310;11311	11311				4
PGLTIQAPQLEVSVPSANIEGLEGKLK	GlyGly (K)	2901.5811	0.58113724	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								48.224	48.224	3	0.015928	12600	20190821_JH_MUT_Ubi	44.3	23.861	1297800	0	1297800	0	0	0	0	0	0	0			3833	1190	3358	10752	11312	11312		1223;1226		1
PGLVVVHAEDGTTSK	Unmodified	1508.7835	0.78347187	725	sp|P30049|ATPD_HUMAN	yes	yes	0	0	0	0	0			1					1	1	26.62	26.62	3	0.0010428	7232	20190902_JH_WT_Ubi_2	94.023	61.769	11585000	0	0	3035100	0	0	0	0	4308900	4240700			3834	725	3359	10753;10754;10755	11313;11314;11315	11314				3
PGMVVTFAPVNVTTEVK	Oxidation (M)	1803.9441	0.94407161	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	1	0	1	1	2	1	1	1	1	1	1	41.625	41.625	2;3	4.4916E-19	10388	20190902_JH_EV_Ubi_3	160.03	96.735	97047000	12592000	4304500	12999000	15075000	20540000	7422100	5689400	9546200	8878000			3835	1096	3360	10756;10757;10758;10759;10760;10761;10762;10763;10764;10765	11316;11317;11318;11319;11320;11321;11322;11323;11324;11325	11318			679	10
PGMVVTFAPVNVTTEVK	Unmodified	1787.9492	0.94915699	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	0	0	1	1		1	1			1	1	45.274	45.274	3	3.6664E-19	12251	20190821_JH_EV_Ubi	160.03	103.5	15654000	5217500	2290600	0	1645800	1794700	0	0	2643700	2061600			3836	1096	3360	10766;10767;10768;10769;10770;10771	11326;11327;11328;11329;11330;11331	11326				6
PGPELLAQMSGAMALGGTIGLTIAK	2 Oxidation (M)	2428.2706	0.27056748	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	2	0	1									48.487	48.487	3	0.0012858	13205	20190821_JH_EV_Ubi	63.122	27.42	1628400	1628400	0	0	0	0	0	0	0	0			3837	1236	3361	10772	11332	11332			774;775	1
PGPTPSGTNVGSSGR	Unmodified	1369.6586	0.65860571	998	sp|P60468|SC61B_HUMAN	yes	yes	0	0	0	0	0									1	21.58	21.58	2	0.00079178	5480	20190902_JH_WT_Ubi_3	102.97	52.93	11939000	0	0	0	0	0	0	0	0	11939000			3838	998	3362	10773	11333	11333				1
PGQFIHTNWTGHGGTVSSSSYNA	Unmodified	2404.0832	0.083235718	932	sp|P52209-2|6PGD_HUMAN;sp|P52209|6PGD_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	32.072	32.072	3	6.452E-05	9167	20190902_JH_WT_Ubi_2	84.436	63.997	95115000	8305200	7790300	25683000	5170800	2906900	5250900	3910700	14904000	21193000			3839	932	3363	10774;10775;10776;10777;10778;10779;10780;10781;10782	11334;11335;11336;11337;11338;11339;11340;11341;11342;11343	11342				10
PGSDTIKPDVQK	Unmodified	1283.6721	0.67213051	1170	sp|Q06830|PRDX1_HUMAN	yes	yes	0	0	0	0	1	1		1					1	1	20.82	20.82	3	5.6876E-05	5168	20190902_JH_WT_Ubi_3	139.31	75.49	133040000	4459500	0	23468000	0	0	0	0	56829000	48285000			3840	1170	3364	10783;10784;10785;10786	11344;11345;11346;11347	11347				4
PGSDTIKPDVQK	GlyGly (K)	1397.7151	0.71505795	1170	sp|Q06830|PRDX1_HUMAN	yes	yes	0	0	1	0	1			1							21.583	21.583	3	0.034203	4006	20190821_JH_WT_Ubi	59.975	15.666	1474600	0	0	1474600	0	0	0	0	0	0			3841	1170	3364	10787	11348	11348				1
PGSDTIKPNVDDSK	Unmodified	1471.7155	0.71545188	752	sp|P32119|PRDX2_HUMAN	yes	yes	0	0	0	0	1								1		21.557	21.557	3	0.027746	5498	20190902_JH_WT_Ubi_2	78.985	53.664	12828000	0	0	0	0	0	0	0	12828000	0			3842	752	3365	10788	11349	11349				1
PGSGSSSGSSNSGSQPGSHPGSQSGSGER	Unmodified	2602.0876	0.087605407	362	sp|O95819-4|M4K4_HUMAN;sp|O95819-2|M4K4_HUMAN;sp|O95819|M4K4_HUMAN;sp|O95819-5|M4K4_HUMAN;sp|O95819-6|M4K4_HUMAN;sp|O95819-3|M4K4_HUMAN	yes	no	0	0	0	0	0			1							13.98	13.98	3	2.3161E-16	2637	20190821_JH_WT_Ubi	118.52	90.109	291630	0	0	291630	0	0	0	0	0	0			3843	362	3366	10789	11350	11350				1
PGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR	Oxidation (M)	2832.3825	0.38245421	1760	sp|Q96B97-3|SH3K1_HUMAN;sp|Q96B97-2|SH3K1_HUMAN;sp|Q96B97|SH3K1_HUMAN	yes	no	0	0	0	1	0			1					1	1	36.061	36.061	3	6.417E-22	8450	20190821_JH_WT_Ubi	127.14	87.854	31693000	0	0	8579800	0	0	0	0	10616000	12497000			3844	1760	3367	10790;10791;10792	11351;11352;11353	11351			994	3
PGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR	Unmodified	2816.3875	0.38753958	1760	sp|Q96B97-3|SH3K1_HUMAN;sp|Q96B97-2|SH3K1_HUMAN;sp|Q96B97|SH3K1_HUMAN	yes	no	0	0	0	0	0								1		37.715	37.715	3	0.020618	11102	20190902_JH_WT_Ubi_2	47.376	22.979	1910800	0	0	0	0	0	0	0	1910800	0			3845	1760	3367	10793	11354	11354				0
PGTPLYAAHFR	Unmodified	1228.6353	0.63529149	481	sp|P09001|RM03_HUMAN	yes	yes	0	0	0	0	0								1	1	28.953	28.953	3	0.0017451	7647	20190902_JH_WT_Ubi_3	106.4	63.118	4875100	0	0	0	0	0	0	0	2456500	2418600			3846	481	3368	10794;10795	11355;11356	11356				2
PGTTGSGAGSGGPGGLTSAAPAGGDK	Unmodified	2083.977	0.97703931	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	0	0	0								1		27.425	27.425	3	4.7344E-05	7458	20190902_JH_WT_Ubi_2	82.486	41.108	2958700	0	0	0	0	0	0	0	2958700	0			3847	1090	3369	10796	11357	11357				1
PGTTGSGAGSGGPGGLTSAAPAGGDKK	GlyGly (K)	2326.1149	0.11492978	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1		23.874	23.874	3	6.7184E-44	5272	20190902_JH_MUT_Ubi_2	175.93	133.11	13548000	952690	1631000	1866100	0	1742800	2687600	2161900	2506200	0			3848	1090	3370	10797;10798;10799;10800;10801;10802;10803	11358;11359;11360;11361;11362;11363;11364;11365;11366	11362		1086;1087		9
PGVGLDAINDANLLEACIYR	Unmodified	2173.0838	0.08375299	553	sp|P14324-2|FPPS_HUMAN;sp|P14324|FPPS_HUMAN	yes	no	0	0	0	0	0	1									51.886	51.886	2	0.0049517	14011	20190821_JH_EV_Ubi	65.374	38.405	358000	358000	0	0	0	0	0	0	0	0			3849	553	3371	10804	11367	11367				1
PGVTVKDVNQQEFVR	GlyGly (K)	1828.9432	0.94316041	803	sp|P39019|RS19_HUMAN	yes	yes	0	0	1	0	1	1									30.658	30.658	3	0.011156	6657	20190821_JH_EV_Ubi	69.045	44.252	638520	638520	0	0	0	0	0	0	0	0			3850	803	3372	10805	11368	11368		783		1
PGVWWPDMHR	Oxidation (M)	1295.587	0.58696109	540	sp|P12955-3|PEPD_HUMAN;sp|P12955-2|PEPD_HUMAN;sp|P12955|PEPD_HUMAN	yes	no	0	0	0	1	0									1	33.453	33.453	3	0.021417	9285	20190902_JH_WT_Ubi_3	70.908	53.435	2585400	0	0	0	0	0	0	0	0	2585400			3851	540	3373	10806	11369	11369			321	1
PHASIMFCTVGVLLR	Unmodified	1699.8902	0.89020232	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	0		1	1							44.481	44.481	3	7.0852E-16	11762	20190821_JH_WT_Ubi	168.31	123.87	15219000	0	1532900	13687000	0	0	0	0	0	0			3852	1182	3374	10807;10808	11370;11371	11371				2
PHASIMFCTVGVLLR	Oxidation (M)	1715.8851	0.88511694	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	1	0		1	1					1	1	40.747	40.747	3	1.4449E-15	10273	20190821_JH_WT_Ubi	166.48	109.91	31671000	0	0	19922000	0	0	0	0	5002400	6746600			3853	1182	3374	10809;10810;10811;10812	11372;11373;11374;11375	11373			741	4
PHASIMFCTVGVLLRK	GlyGly (K)	1942.0281	0.028092786	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	1	0	1								1		36.238	36.238	3	0.036575	10562	20190902_JH_WT_Ubi_2	51.009	23.333	618390000	0	0	0	0	0	0	0	618390000	0			3854	1182	3375	10813	11376	11376				1
PHIDSVWPFEK	Unmodified	1353.6717	0.67173657	1836	sp|Q99536|VAT1_HUMAN;sp|Q99536-3|VAT1_HUMAN;sp|Q99536-2|VAT1_HUMAN	yes	no	0	0	0	0	0			1						1	38.385	38.385	3	0.022277	10887	20190902_JH_WT_Ubi_3	63.073	9.1056	7257300	0	0	4219700	0	0	0	0	0	3037700			3855	1836	3376	10814;10815	11377;11378	11378				2
PHLMSQELPEDWDK	Oxidation (M)	1739.7825	0.78248559	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	1	0			1							31.74	31.74	3	0.022844	6856	20190821_JH_WT_Ubi	59.248	16.272	1316200	0	0	1316200	0	0	0	0	0	0			3856	444	3377	10816	11379	11379			245	1
PHNPMVNAGAIVVTSLIK	Oxidation (M)	1876.0241	0.024053266	324	sp|O94925|GLSK_HUMAN;sp|O94925-3|GLSK_HUMAN	yes	no	0	0	0	1	0			1					1	1	39.654	39.654	3	0.00070322	9835	20190821_JH_WT_Ubi	84.41	55.082	6372300	0	0	3131600	0	0	0	0	2013700	1227100			3857	324	3378	10817;10818;10819	11380;11381;11382	11380			151	3
PHNPMVNAGAIVVTSLIK	Unmodified	1860.0291	0.029138644	324	sp|O94925|GLSK_HUMAN;sp|O94925-3|GLSK_HUMAN	yes	no	0	0	0	0	0			1							44.195	44.195	3	0.026804	11699	20190821_JH_WT_Ubi	44.299	11.776	1772200	0	0	1772200	0	0	0	0	0	0			3858	324	3378	10820	11383	11383				1
PHSEAGTAFIQTQQLHAAMADTFLEHMCR	Unmodified	3297.5118	0.51177059	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN	yes	no	0	0	0	0	0		1	1							42.146	42.146	4	1.7318E-07	10394	20190821_JH_MUT_Ubi	93.712	70.989	38192000	0	7191900	31000000	0	0	0	0	0	0			3859	556	3379	10821;10822	11384;11385;11386	11384				3
PHSGFHVAFK	Unmodified	1125.572	0.57196295	1593	sp|Q8IYU8|MICU2_HUMAN	yes	yes	0	0	0	0	0			1							22.899	22.899	3	0.013404	4305	20190821_JH_WT_Ubi	76.17	31.417	1457200	0	0	1457200	0	0	0	0	0	0			3860	1593	3380	10823	11387	11387				1
PHSIVDPLVR	Unmodified	1131.64	0.64004252	1612	sp|Q8N3E9|PLCD3_HUMAN	yes	yes	0	0	0	0	0									1	29.728	29.728	3	0.018238	8018	20190902_JH_WT_Ubi_3	70.028	41.332	1073800	0	0	0	0	0	0	0	0	1073800			3861	1612	3381	10824	11388	11388				1
PHVNVGTIGHVDHGK	Unmodified	1565.8063	0.806273	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	0	0	1								1	20.022	20.022	4	9.9774E-05	4974	20190902_JH_WT_Ubi_3	110.51	78.596	58461000	11845000	0	0	0	0	0	0	0	46616000			3862	883	3382	10825;10826	11389;11390	11390				2
PHYFWPLLVGR	Unmodified	1383.7452	0.74517629	833	sp|P42704|LPPRC_HUMAN	yes	yes	0	0	0	0	0								1		44.859	44.859	3	0.0046905	13472	20190902_JH_WT_Ubi_2	94.692	27.538	1132600	0	0	0	0	0	0	0	1132600	0			3863	833	3383	10827	11391	11391				1
PIDVQVITHHMQR	Oxidation (M)	1588.8144	0.81439484	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	25.892	25.892	4	0.0063826	7015	20190902_JH_WT_Ubi_2	78.964	36.175	75071000	0	1997100	15711000	0	0	5466000	5530100	25281000	21086000			3864	1015	3384	10828;10829;10830;10831;10832;10833	11392;11393;11394;11395;11396;11397	11396			629	6
PIDVQVITHHMQR	Unmodified	1572.8195	0.81948022	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	0	0			1					1		30.208	30.208	4	0.0024252	6348	20190821_JH_WT_Ubi	90.697	50.32	18246000	0	0	7345400	0	0	0	0	10900000	0			3865	1015	3384	10834;10835	11398;11399	11398				2
PIFGSLHHVPDLSCR	Unmodified	1733.8672	0.86715869	1679	sp|Q8TD19|NEK9_HUMAN	yes	yes	0	0	0	0	0			1			1	1		1	32.729	32.729	4	0.0094309	8310	20190902_JH_MUT_Ubi_2	63.292	22.919	19148000	0	0	6393400	0	0	3555200	2928400	0	6270500			3866	1679	3385	10836;10837;10838;10839	11400;11401;11402;11403	11400				4
PIFVFDGDAPLLKKQTLVK	Unmodified	2128.2296	0.22961259	710	sp|P28715-3|ERCC5_HUMAN;sp|P28715|ERCC5_HUMAN	yes	no	0	0	0	0	2		1								48.066	48.066	3	0.013281	12554	20190821_JH_MUT_Ubi	80.738	2.2375	2532000	0	2532000	0	0	0	0	0	0	0			3867	710	3386	10840	11404	11404				1
PIGALNPKR	GlyGly (K)	1078.6247	0.6247268	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN;sp|Q8NFP9-3|NBEA_HUMAN;sp|Q8NFP9|NBEA_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		1	1		21.432	21.432	3	0.0043869	3754	20190821_JH_EV_Ubi	118.74	79.989	229680000	13501000	14096000	48762000	17079000	11835000	0	40689000	83714000	0			3868	910	3387	10841;10842;10843;10844;10845;10846;10847	11405;11406;11407;11408;11409;11410;11411	11405		872		7
PIGPDDAIDALSSDFTCGSPTAAGK	Unmodified	2462.1271	0.12713395	632	sp|P20810-3|ICAL_HUMAN;sp|P20810-4|ICAL_HUMAN;sp|P20810-8|ICAL_HUMAN;sp|P20810-2|ICAL_HUMAN;sp|P20810|ICAL_HUMAN;sp|P20810-9|ICAL_HUMAN;sp|P20810-5|ICAL_HUMAN;sp|P20810-10|ICAL_HUMAN;sp|P20810-7|ICAL_HUMAN;sp|P20810-6|ICAL_HUMAN	yes	no	0	0	0	0	0								1	1	49.591	49.591	3	0.0024941	14497	20190902_JH_WT_Ubi_3	58.952	20.681	3485600	0	0	0	0	0	0	0	1080600	2405000			3869	632	3388	10848;10849	11412;11413	11413				2
PIHQGPDAAVTGHIR	Unmodified	1567.8219	0.82192306	949	sp|P53618|COPB_HUMAN	yes	yes	0	0	0	0	0					1			1	1	22.321	22.321	4	0.00038931	5823	20190902_JH_WT_Ubi_2	103.13	67.593	31970000	0	0	0	0	4764300	0	0	12828000	14378000			3870	949	3389	10850;10851;10852	11414;11415;11416	11415				3
PIIHFGSDYEDR	Unmodified	1447.6732	0.67319314	404	sp|P04156-2|PRIO_HUMAN;sp|P04156|PRIO_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	32.229	32.229	3	8.3302E-06	7002	20190821_JH_WT_Ubi	140.24	104.59	16522000	684280	0	4159900	0	0	0	0	5885800	5792300			3871	404	3390	10853;10854;10855;10856	11417;11418;11419;11420	11418				4
PILQVINIRPITTGNSPPR	Unmodified	2085.2059	0.20585746	699	sp|P27694|RFA1_HUMAN	yes	yes	0	0	0	0	1	1	1	1	1	1	1				40.935	40.935	3	0.00025266	10635	20190821_JH_EV_Ubi	103.39	73.236	47922000	12393000	6493500	8769700	7758600	5037000	7469400	0	0	0			3872	699	3391	10857;10858;10859;10860;10861;10862	11421;11422;11423;11424;11425;11426	11421				6
PIPSKPQLKQLQVLDDQGPER	GlyGly (K);4 Deamidation (NQ)	2503.2806	0.28059812	1826	sp|Q96T58|MINT_HUMAN	yes	yes	0	4	1	0	2					1					37.838	37.838	3	0.035427	9378	20190902_JH_EV_Ubi_3	46.461	7.8839	5080000	0	0	0	0	5080000	0	0	0	0			3873	1826	3392	10863	11427	11427	1202;1203;1204;1205			1
PIRPGQHPAASPTHPSAIR	Unmodified	1989.0657	0.06567558	758	sp|P33176|KINH_HUMAN	yes	yes	0	0	0	0	1	1		1	1	1			1	1	19.864	19.864	5	0.0012061	3619	20190821_JH_WT_Ubi	73.168	48.978	60734000	4533600	0	10056000	3398300	3601300	0	0	18983000	20162000			3874	758	3393	10864;10865;10866;10867;10868;10869	11428;11429;11430;11431;11432;11433	11431				6
PISAESAIMNPASKVIALK	Oxidation (M);2 GlyGly (K)	2183.162	0.16200331	952	sp|P53675-2|CLH2_HUMAN;sp|P53675|CLH2_HUMAN	yes	no	0	0	2	1	1				1						49.093	49.093	3	0.026429	12019	20190902_JH_EV_Ubi_2	49.463	6.9428	503800	0	0	0	503800	0	0	0	0	0			3875	952	3394	10870	11434	11434		910;911	597	0
PITHKVEEEDGK	GlyGly (K)	1494.7314	0.7314363	970	sp|P55011|S12A2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	16.315	16.315	3;4	0.00066279	3661	20190902_JH_MUT_Ubi_2	117.95	65.604	44757000	7298700	1571500	1410600	9737800	8842900	4503800	1397500	4913700	5080300			3876	970	3395	10871;10872;10873;10874;10875;10876;10877;10878;10879	11435;11436;11437;11438;11439;11440;11441;11442;11443	11439		947;948		9
PITQYPHAVGK	Unmodified	1209.6506	0.6506072	805	sp|P39656-2|OST48_HUMAN;sp|P39656-3|OST48_HUMAN;sp|P39656|OST48_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	22.977	22.977	3	0.00044896	5828	20190902_JH_WT_Ubi_3	126.71	76.667	32084000	2169500	0	6431300	3405800	1906300	0	0	7889100	10282000			3877	805	3396	10880;10881;10882;10883;10884;10885	11444;11445;11446;11447;11448;11449	11449				6
PIWEQIGSSFIQHYYQLFDNDR	Unmodified	2755.3031	0.3030649	1032	sp|P61970|NTF2_HUMAN	yes	yes	0	0	0	0	0								1		55.193	55.193	3	0.00032031	16381	20190902_JH_WT_Ubi_2	75.319	55.732	2485000	0	0	0	0	0	0	0	2485000	0			3878	1032	3397	10886	11450	11450				1
PIYGGWLLLAPDGTDFDNPVHR	Unmodified	2452.2175	0.21754435	1498	sp|Q6WCQ1-3|MPRIP_HUMAN;sp|Q6WCQ1|MPRIP_HUMAN;sp|Q6WCQ1-2|MPRIP_HUMAN	yes	no	0	0	0	0	0			1						1	51.834	51.834	3	2.7253E-46	14667	20190821_JH_WT_Ubi	193.19	154.41	8309400	0	0	6620600	0	0	0	0	0	1688800			3879	1498	3398	10887;10888	11451;11452	11451				2
PIYKPEQTVK	Unmodified	1201.6707	0.67067394	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	0	1			1							21.507	21.507	3	0.0095523	3983	20190821_JH_WT_Ubi	109.79	47.243	13791000	0	0	13791000	0	0	0	0	0	0		+	3880	0	3399	10889	11453	11453				1
PKEISEIQR	GlyGly (K)	1212.6463	0.64625011	1634	sp|Q8NBR6-2|MINY2_HUMAN;sp|Q8NBR6|MINY2_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	20.887	20.887	3	0.0037326	3856	20190821_JH_WT_Ubi	117.53	41.194	78101000	5371600	5512200	6094900	6559300	10885000	11654000	13656000	7009600	11358000			3881	1634	3400	10890;10891;10892;10893;10894;10895;10896;10897;10898	11454;11455;11456;11457;11458;11459;11460;11461;11462	11460		1636		9
PKEPTMVAPR	Oxidation (M);GlyGly (K)	1254.6391	0.63905624	1396	sp|Q27J81-2|INF2_HUMAN;sp|Q27J81|INF2_HUMAN	yes	no	0	0	1	1	1							1			18.134	18.134	3	0.023954	3894	20190902_JH_MUT_Ubi_3	75.387	20.406	2332400	0	0	0	0	0	0	2332400	0	0			3882	1396	3401	10899	11463	11463		1426	860	1
PKLIGEELAQLK	GlyGly (K)	1451.8348	0.83477916	959	sp|P54252-5|ATX3_HUMAN;sp|P54252-3|ATX3_HUMAN;sp|P54252-4|ATX3_HUMAN;sp|P54252|ATX3_HUMAN;sp|P54252-1|ATX3_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			34.836	34.836	3	0.00017524	8533	20190902_JH_MUT_Ubi_3	129	81.699	14086000	1884400	2758600	0	1194700	1508000	3543200	3197400	0	0			3883	959	3402	10900;10901;10902;10903;10904;10905	11464;11465;11466;11467;11468;11469	11469		924		6
PKLPQTLSR	GlyGly (K)	1152.6615	0.66150624	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	1	0	1						1	1			23.534	23.534	3	0.01295	5045	20190902_JH_MUT_Ubi_3	88.496	51.151	13198000	0	0	0	0	0	6602600	6595400	0	0			3884	367	3403	10906;10907	11470;11471	11471		328		2
PKLSEPEEELLQQFK	GlyGly (K)	1927.9891	0.98910755	2213	sp|Q9Y2U8|MAN1_HUMAN	yes	yes	0	0	1	0	1		1								40.476	40.476	3	0.016764	9680	20190821_JH_MUT_Ubi	69.314	39.207	835580	0	835580	0	0	0	0	0	0	0			3885	2213	3404	10908	11472	11472		2065		0
PKVTPNPDLLDLVQTADEK	GlyGly (K)	2206.1481	0.14812739	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1					1		1			42.114	42.114	3	0.00027544	11069	20190902_JH_MUT_Ubi_3	88.385	53.887	6828800	0	0	0	0	2995900	0	3832900	0	0			3886	1614	3405	10909;10910	11473;11474	11474		1612;1613		2
PLAGGEPVSLGSLR	Unmodified	1351.746	0.74596415	443	sp|P07203|GPX1_HUMAN;sp|P07203-2|GPX1_HUMAN	yes	no	0	0	0	0	0			1							37.736	37.736	2	0.0016477	9042	20190821_JH_WT_Ubi	108.56	71.499	10367000	0	0	10367000	0	0	0	0	0	0			3887	443	3406	10911	11475	11475				0
PLAHHIPVEK	Unmodified	1139.6451	0.64512789	977	sp|P55145|MANF_HUMAN	yes	yes	0	0	0	0	0	1		1						1	19.329	19.329	3	0.010445	3314	20190821_JH_EV_Ubi	84.213	36.122	8094900	727890	0	1816500	0	0	0	0	0	5550600			3888	977	3407	10912;10913;10914	11476;11477;11478	11476				3
PLALPGAHVVVTGGSSGIGK	Unmodified	1816.0207	0.020682448	1164	sp|Q06136|KDSR_HUMAN;sp|Q06136-2|KDSR_HUMAN	yes	no	0	0	0	0	0	1				1					35.57	35.57	3	0.0057092	8738	20190821_JH_EV_Ubi	60.307	35.343	3167400	1504100	0	0	0	1663300	0	0	0	0			3889	1164	3408	10915;10916	11479;11480	11479				2
PLALYVFSHNHK	Unmodified	1424.7565	0.75646926	922	sp|P51648|AL3A2_HUMAN;sp|P51648-2|AL3A2_HUMAN	yes	no	0	0	0	0	0			1					1	1	30.817	30.817	3;4	7.6886E-06	6609	20190821_JH_WT_Ubi	140.78	99.38	37310000	0	0	17684000	0	0	0	0	15168000	4458300			3890	922	3409	10917;10918;10919	11481;11482;11483	11481				3
PLALYVFSHNHK	Deamidation (NQ)	1425.7405	0.74048484	922	sp|P51648|AL3A2_HUMAN;sp|P51648-2|AL3A2_HUMAN	yes	no	0	1	0	0	0								1		34.33	34.33	3	0.021271	9913	20190902_JH_WT_Ubi_2	79.201	36.807	3789000	0	0	0	0	0	0	0	3789000	0			3891	922	3409	10920	11484	11484	315			1
PLASAHLTSAAGDTR	Unmodified	1466.7478	0.74775506	1710	sp|Q92538-3|GBF1_HUMAN;sp|Q92538-2|GBF1_HUMAN;sp|Q92538|GBF1_HUMAN	yes	no	0	0	0	0	0	1				1			1	1	23.818	23.818	3	0.0007038	6314	20190902_JH_WT_Ubi_2	98.592	53.745	9579200	1386900	0	0	0	2115500	0	0	1866900	4209900			3892	1710	3410	10921;10922;10923;10924	11485;11486;11487;11488	11487				4
PLDHAQPPSSLVIDK	Unmodified	1615.857	0.85697116	106	sp|O00151|PDLI1_HUMAN	yes	yes	0	0	0	0	0					1				1	31.028	31.028	3	0.017776	7285	20190902_JH_EV_Ubi_3	57.159	0.5106	2162600	0	0	0	0	726640	0	0	0	1436000			3893	106	3411	10925;10926	11489;11490	11489				2
PLEEKQEEER	GlyGly (K)	1399.6579	0.657937	1038	sp|P62191-2|PRS4_HUMAN;sp|P62191|PRS4_HUMAN	yes	no	0	0	1	0	1								1	1	16.942	16.942	3	0.019758	4081	20190902_JH_WT_Ubi_3	74.944	39.421	4035200	0	0	0	0	0	0	0	1946500	2088700			3894	1038	3412	10927;10928	11491;11492	11492		1014		2
PLEFTVAGR	Unmodified	988.53418	0.53418046	1996	sp|Q9NNW7-2|TRXR2_HUMAN;sp|Q9NNW7|TRXR2_HUMAN;sp|Q9NNW7-4|TRXR2_HUMAN;sp|Q9NNW7-3|TRXR2_HUMAN	yes	no	0	0	0	0	0									1	34.618	34.618	2	0.0070092	9698	20190902_JH_WT_Ubi_3	104.06	38.159	1812700	0	0	0	0	0	0	0	0	1812700			3895	1996	3413	10929	11493	11493				1
PLESDQGDPFTLFNVFNAWVQVK	GlyGly (K);3 Deamidation (NQ)	2767.3017	0.30172749	1278	sp|Q14147|DHX34_HUMAN	yes	yes	0	3	1	0	0	1					1				31.387	31.387	3	0.019863	7086	20190821_JH_EV_Ubi	44.729	13.255	5285300	4383100	0	0	0	0	902190	0	0	0			3896	1278	3414	10930;10931	11494;11495	11494	410;411;1026;1027	1342		2
PLESSQVKYLR	GlyGly (K)	1432.7674	0.76742787	1720	sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	26.731	26.731	3	0.0010495	4800	20190821_JH_MUT_Ubi	116.84	67.648	316820000	7505200	15158000	55874000	12744000	8121100	40274000	22959000	95649000	58533000			3897	1720	3415	10932;10933;10934;10935;10936;10937;10938;10939;10940	11496;11497;11498;11499;11500;11501;11502;11503;11504	11499		1713		9
PLESSQVKYLR	GlyGly (K);Deamidation (NQ)	1433.7514	0.75144346	1720	sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN	yes	no	0	1	1	0	1						1				27.975	27.975	3	0.0035903	6608	20190902_JH_MUT_Ubi_2	127.42	78.911	1583100	0	0	0	0	0	1583100	0	0	0			3898	1720	3415	10941	11505	11505	1175	1713		1
PLFATNPFDQDVEK	Unmodified	1619.7831	0.78313752	1721	sp|Q92783-2|STAM1_HUMAN;sp|Q92783|STAM1_HUMAN	yes	no	0	0	0	0	0									1	43.653	43.653	2	0.0082848	12742	20190902_JH_WT_Ubi_3	77.674	19.715	1252900	0	0	0	0	0	0	0	0	1252900			3899	1721	3416	10942	11506	11506				1
PLFFDLALNHVAFPPLEDK	Unmodified	2182.1463	0.14627689	2121	sp|Q9UHB9-4|SRP68_HUMAN;sp|Q9UHB9-2|SRP68_HUMAN;sp|Q9UHB9|SRP68_HUMAN;sp|Q9UHB9-3|SRP68_HUMAN	yes	no	0	0	0	0	0		1	1							53.864	53.864	3	0.0033123	14370	20190821_JH_MUT_Ubi	67.153	44.016	2969900	0	1235600	1734300	0	0	0	0	0	0			3900	2121	3417	10943;10944	11507;11508	11507				2
PLFGPGYTGIR	Unmodified	1176.6291	0.62914348	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	0	0	0			1							38.176	38.176	2	0.029161	9184	20190821_JH_WT_Ubi	65.305	22.707	10234000	0	0	10234000	0	0	0	0	0	0			3901	849	3418	10945	11509	11509				0
PLFLVHPIEGSTTVFHSLASR	Unmodified	2307.2376	0.23755152	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	42.395	42.395	4	1.8015E-08	11040	20190821_JH_WT_Ubi	112.58	86.594	49797000	0	7238300	20965000	0	0	5208000	2923200	9054300	4408200			3902	881	3419	10946;10947;10948;10949;10950;10951	11510;11511;11512;11513;11514;11515	11513				6
PLFPHVLCHNCAVEFNFGQK	Unmodified	2413.146	0.14597609	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	39.577	39.577	4	1.4563E-06	9527	20190821_JH_MUT_Ubi	111.11	85.766	447910000	0	60307000	192590000	0	0	37730000	39106000	58292000	59879000			3903	1128	3420	10952;10953;10954;10955;10956;10957	11516;11517;11518;11519;11520;11521	11516				6
PLFPHVLCHNCAVEFNFGQK	Deamidation (NQ)	2414.13	0.12999168	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	1	0	0	0			1				1		1	42.351	42.351	4	7.343E-05	11056	20190821_JH_WT_Ubi	89.311	64.889	16007000	0	0	10887000	0	0	0	1899300	0	3221100			3904	1128	3420	10958;10959;10960	11522;11523;11524	11523	366			3
PLFQLQSGHK	Unmodified	1153.6244	0.62439245	1305	sp|Q14746-2|COG2_HUMAN;sp|Q14746|COG2_HUMAN	yes	no	0	0	0	0	0		1	1							28.364	28.364	3	0.0058628	5760	20190821_JH_WT_Ubi	94.409	37.862	3185400	0	508610	2676800	0	0	0	0	0	0			3905	1305	3421	10961;10962	11525;11526	11526				2
PLGPNQTTSKSK	GlyGly (K)	1370.7154	0.7153923	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	1	0	1		1		1	1					15.783	15.783	3	0.003085	3307	20190902_JH_EV_Ubi_2	101.71	34.791	1029600	0	285750	0	429590	314280	0	0	0	0			3906	255	3422	10963;10964;10965	11527;11528;11529	11527		232		3
PLHLHIIPTEPFPTTR	Unmodified	1868.0309	0.030853203	238	sp|O60306|AQR_HUMAN	yes	yes	0	0	0	0	0			1	1	1	1			1	37.44	37.44	3;4	1.1587E-05	9215	20190902_JH_EV_Ubi_3	119.17	84.866	15462000	0	0	4834400	3467800	2138000	2098300	0	0	2923200			3907	238	3423	10966;10967;10968;10969;10970	11530;11531;11532;11533;11534	11531				5
PLHPLLVVAPNQLK	Unmodified	1537.9344	0.93443362	1857	sp|Q9BQ52-3|RNZ2_HUMAN;sp|Q9BQ52-4|RNZ2_HUMAN;sp|Q9BQ52|RNZ2_HUMAN	yes	no	0	0	0	0	0	1									37.791	37.791	3	0.0011916	9321	20190821_JH_EV_Ubi	97.452	71.909	964230	964230	0	0	0	0	0	0	0	0			3908	1857	3424	10971	11535	11535				1
PLHYISWLVGHEGK	Unmodified	1634.8569	0.85691158	224	sp|O43847|NRDC_HUMAN;sp|O43847-2|NRDC_HUMAN	yes	no	0	0	0	0	0		1	1			1				36.373	36.373	4	0.00025598	8596	20190821_JH_WT_Ubi	109.16	80.726	8548000	0	745650	6823400	0	0	978890	0	0	0			3909	224	3425	10972;10973;10974	11536;11537;11538	11538				3
PLILQLVHVSQEDK	Unmodified	1617.909	0.90900673	127	sp|O00429-4|DNM1L_HUMAN;sp|O00429-5|DNM1L_HUMAN;sp|O00429-3|DNM1L_HUMAN;sp|O00429-2|DNM1L_HUMAN;sp|O00429|DNM1L_HUMAN;sp|O00429-8|DNM1L_HUMAN;sp|O00429-6|DNM1L_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1	1			40.148	40.148	3	0.00013494	10081	20190902_JH_EV_Ubi_2	113.52	83.464	10607000	4255100	1214000	0	1880500	1561500	808310	887430	0	0			3910	127	3426	10975;10976;10977;10978;10979;10980	11539;11540;11541;11542;11543;11544	11540				6
PLIPLQKETDSETQK	GlyGly (K)	1839.9578	0.95780742	1816	sp|Q96RT1-7|ERBIN_HUMAN;sp|Q96RT1-6|ERBIN_HUMAN;sp|Q96RT1-4|ERBIN_HUMAN;sp|Q96RT1-5|ERBIN_HUMAN;sp|Q96RT1-3|ERBIN_HUMAN;sp|Q96RT1-9|ERBIN_HUMAN;sp|Q96RT1-2|ERBIN_HUMAN;sp|Q96RT1|ERBIN_HUMAN;sp|Q96RT1-8|ERBIN_HUMAN	yes	no	0	0	1	0	1	1			1	1					30.003	30.003	3	0.0081983	6867	20190902_JH_EV_Ubi_3	72.496	34.13	4640000	2136600	0	0	0	2503400	0	0	0	0			3911	1816	3427	10981;10982;10983	11545;11546;11547	11547		1782		3
PLISLHLVDSDSSLAKVPDEAPK	GlyGly (K)	2544.3435	0.34353273	1459	sp|Q658P3-2|STEA3_HUMAN;sp|Q658P3-3|STEA3_HUMAN;sp|Q658P3|STEA3_HUMAN;sp|Q658P3-4|STEA3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	40.588	40.588	4	5.0979E-17	10268	20190821_JH_WT_Ubi	145.99	118.71	50657000	6271400	2300400	20173000	1773200	2277300	3823500	2296100	4360700	7381400			3912	1459	3428	10984;10985;10986;10987;10988;10989;10990;10991;10992	11548;11549;11550;11551;11552;11553;11554;11555;11556	11554		1473		9
PLISVYSEKGESSGK	GlyGly (K)	1693.8523	0.85227972	786	sp|P36578|RL4_HUMAN	yes	yes	0	0	1	0	1							1			27.506	27.506	3	0.0057544	6225	20190902_JH_MUT_Ubi_3	75.483	48.772	1895200	0	0	0	0	0	0	1895200	0	0			3913	786	3429	10993	11557	11557		769		1
PLKTYVDPHTYEDPNQAVLK	GlyGly (K)	2441.2227	0.22268931	713	sp|P29317|EPHA2_HUMAN	yes	yes	0	0	1	0	1	1	1								34.182	34.182	4	0.00094936	8033	20190821_JH_EV_Ubi	74.338	37.701	5944200	3678000	2266300	0	0	0	0	0	0	0			3914	713	3430	10994;10995	11558;11559	11558		692		2
PLLASKLTEK	GlyGly (K)	1212.7078	0.70778773	2073	sp|Q9NZM1-6|MYOF_HUMAN;sp|Q9NZM1|MYOF_HUMAN;sp|Q9NZM1-2|MYOF_HUMAN	yes	no	0	0	1	0	1							1			26.95	26.95	3	0.018079	6004	20190902_JH_MUT_Ubi_3	77.744	51.302	926220	0	0	0	0	0	0	926220	0	0			3915	2073	3431	10996	11560	11560		1953		1
PLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEK	GlyGly (K)	3730.8942	0.89415112	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	1	1	1	1							50.138	50.138	3	4.5326E-09	13989	20190821_JH_WT_Ubi	89.99	68.672	12752000	830190	3084500	8837500	0	0	0	0	0	0			3916	651	3432	10997;10998;10999	11561;11562;11563	11563		623;625		3
PLLHGSPVQNIVGILCR	Unmodified	1872.0404	0.040372032	2151	sp|Q9UKK3|PARP4_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1	1	44.995	44.995	3	0.00012135	11642	20190821_JH_MUT_Ubi	105.46	52.459	13142000	703040	1652700	5275900	0	0	762950	706670	942440	3098600			3917	2151	3433	11000;11001;11002;11003;11004;11005;11006	11564;11565;11566;11567;11568;11569;11570	11565				7
PLLLALHGPSGVGK	Unmodified	1357.8082	0.80817048	2059	sp|Q9NXH8|TOR4A_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1			35.664	35.664	3	0.0033225	8323	20190821_JH_WT_Ubi	83.204	53.46	6331300	0	742400	3722300	0	0	969040	897560	0	0			3918	2059	3434	11007;11008;11009;11010	11571;11572;11573;11574	11574				4
PLLLHTGMGR	Unmodified	1093.6066	0.6066339	1918	sp|Q9GZT8-2|NIF3L_HUMAN;sp|Q9GZT8|NIF3L_HUMAN	yes	no	0	0	0	0	0			1							28.698	28.698	3	0.012183	5900	20190821_JH_WT_Ubi	79.489	38.06	2188000	0	0	2188000	0	0	0	0	0	0			3919	1918	3435	11011	11575	11575				1
PLLLLGQLHHLHR	Unmodified	1545.9256	0.92560027	1643	sp|Q8NDH3-3|PEPL1_HUMAN;sp|Q8NDH3-2|PEPL1_HUMAN;sp|Q8NDH3|PEPL1_HUMAN	yes	no	0	0	0	0	0		1	1			1	2	1	1	28.392	28.392	3;4	0.00039096	612	20190902_JH_MUT_Ubi_3	111.86	93.218	173640000	0	6563100	72510000	0	0	15048000	19749000	30397000	29370000			3920	1643	3436	11012;11013;11014;11015;11016;11017;11018	11576;11577;11578;11579;11580;11581;11582;11583	11578				8
PLLMVHGWPGSFYEFYK	Oxidation (M)	2086.0023	0.0022551915	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	1	0			1					1		46.979	46.979	3	6.5659E-11	14161	20190902_JH_WT_Ubi_2	145.7	106.7	80370000	0	0	25696000	0	0	0	0	54674000	0			3921	441	3437	11019;11020	11584;11585	11585			239	2
PLLMVHGWPGSFYEFYK	Unmodified	2070.0073	0.0073405694	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	0	0			1							48.637	48.637	3	0.0015316	13487	20190821_JH_WT_Ubi	103.66	67.9	0	0	0	0	0	0	0	0	0	0			3922	441	3437	11021	11586	11586				1
PLLSAFADIIHSLK	Unmodified	1523.8712	0.87116466	244	sp|O60427-2|FADS1_HUMAN;sp|O60427|FADS1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1		1	51.556	51.556	3	4.9932E-06	13745	20190821_JH_MUT_Ubi	133.04	112.18	4952900	0	1882200	1283600	0	0	304830	732250	0	750000			3923	244	3438	11022;11023;11024;11025;11026	11587;11588;11589;11590;11591	11587				5
PLLTGLMWAQQGTTPGTPK	Oxidation (M);2 Deamidation (NQ)	2014.0081	0.0081284304	1259	sp|Q13724-2|MOGS_HUMAN;sp|Q13724|MOGS_HUMAN	yes	no	0	2	0	1	0			1							43.548	43.548	3	0.020696	11435	20190821_JH_WT_Ubi	58.158	20.982	9082700	0	0	9082700	0	0	0	0	0	0			3924	1259	3439	11027	11592	11592	1018;1019		782	1
PLMIIHHLDECPHSQALK	Oxidation (M)	2154.0714	0.071414164	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	0	1	0	2	1	1	1	1	1	1	1	1	27.881	27.881	4;5	2.8283E-05	6088	20190902_JH_MUT_Ubi_3	108.66	58.604	438680000	95228000	22460000	7570900	78244000	63130000	76513000	72471000	12377000	10683000			3925	367	3440	11028;11029;11030;11031;11032;11033;11034;11035;11036;11037	11593;11594;11595;11596;11597;11598;11599;11600;11601;11602	11599			164	10
PLMIIHHLDECPHSQALK	Unmodified	2138.0765	0.076499542	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1			29.385	29.385	4;5	8.0356E-05	6644	20190902_JH_EV_Ubi_3	100.68	74.133	284440000	76674000	29020000	6034000	36407000	35320000	40790000	60196000	0	0			3926	367	3440	11038;11039;11040;11041;11042;11043;11044	11603;11604;11605;11606;11607;11608;11609	11605				7
PLNPNFCFLQCTSAYPLQPEDVNLR	Unmodified	2992.4211	0.4211479	2010	sp|Q9NR45|SIAS_HUMAN	yes	yes	0	0	0	0	0			1					1	1	52.06	52.06	3	1.0267E-06	15576	20190902_JH_WT_Ubi_2	91.238	34.698	5728400	0	0	3771100	0	0	0	0	649230	1308000			3927	2010	3441	11045;11046;11047	11610;11611;11612	11611				3
PLNYQILLK	Unmodified	1100.6594	0.65938097	1957	sp|Q9H583|HEAT1_HUMAN	yes	yes	0	0	0	0	0						1				40.618	40.618	2	0.024191	11387	20190902_JH_MUT_Ubi_2	79.116	18.328	680640	0	0	0	0	0	680640	0	0	0			3928	1957	3442	11048	11613	11613				0
PLPDHVSIVEPKDEILPTTPISEQK	GlyGly (K)	2895.523	0.52295366	662	sp|P23396|RS3_HUMAN;sp|P23396-2|RS3_HUMAN	yes	no	0	0	1	0	1		1							1	39.664	39.664	4	0.0011444	9481	20190821_JH_MUT_Ubi	63.674	41.677	9206100	0	4859500	0	0	0	0	0	0	4346600			3929	662	3443	11049;11050	11614;11615	11614		632		2
PLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIK	Unmodified	3321.5525	0.55247546	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN	yes	no	0	0	0	0	0			1					1	1	41.548	41.548	3	6.6543E-10	11938	20190902_JH_WT_Ubi_3	97.312	75.073	14700000	0	0	5368900	0	0	0	0	4635900	4695600			3930	1476	3444	11051;11052;11053	11616;11617;11618	11618				3
PLPSDIAVIMYTSGSTGLPK	Unmodified	2046.0707	0.070728687	353	sp|O95573|ACSL3_HUMAN	yes	yes	0	0	0	0	0			1							51.676	51.676	3	0.0078069	14557	20190821_JH_WT_Ubi	57.482	29.27	1906300	0	0	1906300	0	0	0	0	0	0			3931	353	3445	11054	11619	11619				1
PLSEKPITHK	GlyGly (K)	1262.6983	0.69828568	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	16.819	16.819	3	0.00038539	2855	20190821_JH_EV_Ubi	139.15	72.532	193120000	23305000	14790000	10171000	0	54889000	29390000	14975000	25435000	20161000			3932	970	3446	11055;11056;11057;11058;11059;11060;11061;11062	11620;11621;11622;11623;11624;11625;11626;11627	11620		947;949		8
PLSLFQTSHTLHLSHLNR	Unmodified	2100.1229	0.12285611	1604	sp|Q8N163-2|CCAR2_HUMAN;sp|Q8N163|CCAR2_HUMAN	yes	no	0	0	0	0	0			2					1	1	33.056	33.056	4;5	0.002206	9434	20190902_JH_WT_Ubi_2	72.583	32.517	102120000	0	0	44991000	0	0	0	0	30055000	27074000			3933	1604	3447	11063;11064;11065;11066	11628;11629;11630;11631	11630				4
PLSLPSLHVFGDTDK	Unmodified	1624.8461	0.84607213	1706	sp|Q8WZ82|OVCA2_HUMAN	yes	yes	0	0	0	0	0	1			1	1	1				42.681	42.681	3	0.0019328	11364	20190821_JH_EV_Ubi	85.45	57.801	4030200	1619600	0	0	1074400	649380	686830	0	0	0			3934	1706	3448	11067;11068;11069;11070	11632;11633;11634;11635	11632				4
PLSSLTPLIMAAK	Oxidation (M)	1356.7687	0.76867343	1221	sp|Q13177|PAK2_HUMAN	yes	yes	0	0	0	1	0									1	41.772	41.772	2	0.0014642	12105	20190902_JH_WT_Ubi_3	105.98	48.385	2103000	0	0	0	0	0	0	0	0	2103000			3935	1221	3449	11071	11636	11636			768	0
PLTLSNYQTNK	Unmodified	1277.6616	0.66156582	401	sp|P04080|CYTB_HUMAN	yes	yes	0	0	0	0	0					1					29.216	29.216	2	2.0493E-10	6649	20190902_JH_EV_Ubi_3	166.66	118.79	8387600	0	0	0	0	8387600	0	0	0	0			3936	401	3450	11072	11637	11637				1
PLTQVGGDHIK	Unmodified	1163.6299	0.62987176	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	22.283	22.283	3	0.0014127	4643	20190902_JH_EV_Ubi_2	108.31	70.152	50453000	2868500	0	9591500	4752000	3514600	0	0	18369000	11358000			3937	282	3451	11073;11074;11075;11076;11077;11078	11638;11639;11640;11641;11642;11643	11639				6
PLVHLQLPR	Unmodified	1071.6553	0.65529865	2037	sp|Q9NUY8-2|TBC23_HUMAN;sp|Q9NUY8|TBC23_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	33.269	33.269	3	0.00012873	7428	20190821_JH_WT_Ubi	144.38	72.874	61795000	0	1948100	19540000	0	0	0	4550800	18882000	16874000			3938	2037	3452	11079;11080;11081;11082;11083	11644;11645;11646;11647;11648	11646				5
PLVIIAEDVDGEALSTLVLNR	Unmodified	2236.2315	0.23146308	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	0			1							54.505	54.505	3	6.6599E-07	15633	20190821_JH_WT_Ubi	105.06	73.949	3701800	0	0	3701800	0	0	0	0	0	0			3939	515	3453	11084	11649	11649				1
PLVLCGPPGSGK	Unmodified	1180.6274	0.62742892	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	0									1	32.148	32.148	2	0.00035739	8830	20190902_JH_WT_Ubi_3	123.86	77.045	7804400	0	0	0	0	0	0	0	0	7804400			3940	1284	3454	11085	11650	11650				1
PLVVFVLGGPGAGK	Unmodified	1309.7758	0.77580772	728	sp|P30085-2|KCY_HUMAN;sp|P30085|KCY_HUMAN	yes	no	0	0	0	0	0			1					1	1	46.741	46.741	2	2.741E-14	12738	20190821_JH_WT_Ubi	176.79	128.82	13050000	0	0	7654000	0	0	0	0	2316200	3079900			3941	728	3455	11086;11087;11088	11651;11652;11653	11651				0
PLYHHFTTAINTENIR	Unmodified	1925.9748	0.97479489	1291	sp|Q14344-2|GNA13_HUMAN;sp|Q14344|GNA13_HUMAN	yes	no	0	0	0	0	0								1		29.896	29.896	3	0.014862	8323	20190902_JH_WT_Ubi_2	57.288	16.711	1526700	0	0	0	0	0	0	0	1526700	0			3942	1291	3456	11089	11654	11654				1
PLYLHLHQTLHK	Unmodified	1498.8409	0.84086759	1762	sp|Q96BJ3-2|AIDA_HUMAN;sp|Q96BJ3-3|AIDA_HUMAN;sp|Q96BJ3|AIDA_HUMAN	yes	no	0	0	0	0	0		1	1				1		1	19.662	19.662	3;4	0.012492	4936	20190821_JH_WT_Ubi	69.276	33.502	40670000	0	3986600	14995000	0	0	0	8851300	0	12838000			3943	1762	3457	11090;11091;11092;11093	11655;11656;11657;11658	11657				4
PMAFVTLTGLDVVYNAVHR	Oxidation (M)	2118.0932	0.093195464	1527	sp|Q7Z392-4|TPC11_HUMAN;sp|Q7Z392-3|TPC11_HUMAN;sp|Q7Z392|TPC11_HUMAN	yes	no	0	0	0	1	0			1						1	48.918	48.918	3	2.5584E-05	13640	20190821_JH_WT_Ubi	107.63	80.299	2667100	0	0	2039400	0	0	0	0	0	627630			3944	1527	3458	11094;11095	11659;11660	11659			914	2
PMCVESFSDYPPLGR	Oxidation (M)	1769.7753	0.77529172	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	1	0			1	1	1			1	1	39.241	39.241	3	4.4354E-06	11677	20190902_JH_WT_Ubi_2	131.32	89.638	12663000	0	0	1631600	680380	1566100	0	0	4959500	3825300			3945	1096	3459	11096;11097;11098;11099;11100	11661;11662;11663;11664;11665	11664			680	5
PMFIVNTNVPR	Oxidation (M)	1302.6754	0.67544174	551	sp|P14174|MIF_HUMAN	yes	yes	0	0	0	1	0			2	2	1		1	1	1	35.547	35.547	2;3	0.0012891	9838	20190902_JH_WT_Ubi_3	110.39	63.543	27697000	0	0	13815000	6146400	1830300	0	1408200	2339500	2157800			3946	551	3460	11101;11102;11103;11104;11105;11106;11107;11108	11666;11667;11668;11669;11670;11671;11672;11673	11673			336	7
PMGDLLDQIFIHR	Oxidation (M)	1569.7973	0.79734779	177	sp|O15231-5|ZN185_HUMAN;sp|O15231-4|ZN185_HUMAN;sp|O15231-7|ZN185_HUMAN;sp|O15231|ZN185_HUMAN;sp|O15231-3|ZN185_HUMAN;sp|O15231-8|ZN185_HUMAN;sp|O15231-6|ZN185_HUMAN;sp|O15231-9|ZN185_HUMAN;sp|O15231-2|ZN185_HUMAN	yes	no	0	0	0	1	0			1	1		1	1	1	1	45.292	45.292	3	4.6089E-45	12215	20190821_JH_WT_Ubi	216.84	165.62	23607000	0	0	7772400	564160	0	3697400	2591800	4583800	4397300			3947	177	3461	11109;11110;11111;11112;11113;11114	11674;11675;11676;11677;11678;11679	11677			77	6
PMHSLIPLGKSAAK	Oxidation (M);GlyGly (K)	1578.8552	0.85519702	910	sp|P50851-2|LRBA_HUMAN;sp|P50851|LRBA_HUMAN	yes	no	0	0	1	1	1						1		1		23.977	23.977	4	0.028766	5297	20190902_JH_MUT_Ubi_2	50.088	22.534	4521200	0	0	0	0	0	1093000	0	3428100	0			3948	910	3462	11115;11116	11680;11681	11680		874	571	2
PMIHELLTEGR	Oxidation (M)	1310.6653	0.66527099	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	0	1	0				1						28.673	28.673	3	0.024362	6524	20190902_JH_EV_Ubi_2	65.842	32.842	637720	0	0	0	637720	0	0	0	0	0			3949	1311	3463	11117	11682	11682			820	1
PMNIQLVTSQIDAQR	Oxidation (M)	1728.8829	0.88286834	1555	sp|Q86V81|THOC4_HUMAN	yes	yes	0	0	0	1	0					1			1		36.676	36.676	3	0.0037054	10791	20190902_JH_WT_Ubi_2	80.387	38.07	4233000	0	0	0	0	769530	0	0	3463400	0			3950	1555	3464	11118;11119	11683;11684	11684			924	1
PMNIQLVTSQIDAQR	Unmodified	1712.888	0.88795372	1555	sp|Q86V81|THOC4_HUMAN	yes	yes	0	0	0	0	0						1			1	41.442	41.442	3	0.0028647	12038	20190902_JH_WT_Ubi_3	81.128	32.601	2056800	0	0	0	0	0	865990	0	0	1190800			3951	1555	3464	11120;11121	11685;11686	11686				2
PMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSK	Oxidation (M)	3564.7262	0.72623963	1714	sp|Q92597|NDRG1_HUMAN;sp|Q92597-3|NDRG1_HUMAN;sp|Q92597-2|NDRG1_HUMAN	yes	no	0	0	0	1	0			1						1	46.091	46.091	3	6.0618E-05	13465	20190902_JH_WT_Ubi_3	63.74	35.297	3986300	0	0	2845800	0	0	0	0	0	1140400			3952	1714	3465	11122;11123	11687;11688	11688			976	2
PMPPRPPLPNQQFGVSLQHLQEK	Oxidation (M)	2653.3799	0.37987543	1180	sp|Q07960|RHG01_HUMAN	yes	yes	0	0	0	1	1	1	1	1	1	1	1			1	36.254	36.254	4	0.00029248	8526	20190821_JH_WT_Ubi	74.703	50.637	68695000	14424000	4378400	16155000	7625900	10167000	5858900	0	0	10086000			3953	1180	3466	11124;11125;11126;11127;11128;11129;11130	11689;11690;11691;11692;11693;11694;11695	11694			736	7
PMQFLGDEETVR	Oxidation (M)	1436.6606	0.66057954	612	sp|P18669|PGAM1_HUMAN;sp|P15259|PGAM2_HUMAN	yes	no	0	0	0	1	0				1						31.848	31.848	2	0.0039374	7514	20190902_JH_EV_Ubi_2	90.653	32.283	3324700	0	0	0	3324700	0	0	0	0	0			3954	612	3467	11131	11696	11696			377	0
PMQPGPHVVK	Oxidation (M)	1104.575	0.57499942	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	1	0									1	18.077	18.077	3	0.0032485	4419	20190902_JH_WT_Ubi_3	104.01	51.532	8997200	0	0	0	0	0	0	0	0	8997200			3955	282	3468	11132	11697	11697			125	1
PMSFHPPHYLAAR	Oxidation (M)	1538.7453	0.74525264	2070	sp|Q9NZB2|F120A_HUMAN;sp|Q9NZB2-6|F120A_HUMAN;sp|Q9NZB2-2|F120A_HUMAN;sp|Q9NZB2-5|F120A_HUMAN;sp|Q9NZB2-4|F120A_HUMAN	yes	no	0	0	0	1	0			1					2	1	26.278	26.278	3;4	0.022249	7063	20190902_JH_WT_Ubi_2	58.674	26.515	29992000	0	0	5006300	0	0	0	0	15251000	9734800			3956	2070	3469	11133;11134;11135;11136	11698;11699;11700;11701	11699			1105	3
PMSFHPPHYLAAR	Unmodified	1522.7503	0.75033802	2070	sp|Q9NZB2|F120A_HUMAN;sp|Q9NZB2-6|F120A_HUMAN;sp|Q9NZB2-2|F120A_HUMAN;sp|Q9NZB2-5|F120A_HUMAN;sp|Q9NZB2-4|F120A_HUMAN	yes	no	0	0	0	0	0			1						1	29.321	29.321	4	0.0024353	6160	20190821_JH_WT_Ubi	90.614	51.052	5984000	0	0	3821100	0	0	0	0	0	2162900			3957	2070	3469	11137;11138	11702;11703;11704	11703				3
PMVYITVGELVNTHR	Oxidation (M)	1743.8978	0.89779012	1556	sp|Q86VI3|IQGA3_HUMAN	yes	yes	0	0	0	1	0	1									39.35	39.35	3	0.0082159	9925	20190821_JH_EV_Ubi	71.031	41.707	946230	946230	0	0	0	0	0	0	0	0			3958	1556	3470	11139	11705	11705			925	1
PNEGAIVEVALEGYYK	Unmodified	1750.8778	0.87776618	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	0	0	0	0	1	1								46.983	46.983	3	6.8563E-08	12759	20190821_JH_EV_Ubi	130.87	97.666	1431600	869210	562390	0	0	0	0	0	0	0			3959	1142	3471	11140;11141	11706;11707	11706				2
PNEVTKAAESPDQK	GlyGly (K)	1626.7849	0.78492843	955	sp|P53985|MOT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	19.237	19.237	3	9.4415E-15	3529	20190821_JH_WT_Ubi	160.46	114.64	208890000	20300000	7456600	20854000	36818000	36296000	14596000	9947400	19914000	42705000			3960	955	3472	11142;11143;11144;11145;11146;11147;11148;11149;11150	11708;11709;11710;11711;11712;11713;11714;11715;11716;11717	11714		914;917		10
PNFEPPQYPYIPAHITK	Unmodified	2011.0203	0.020348097	221	sp|O43809|CPSF5_HUMAN	yes	yes	0	0	0	0	0			1					1		39.595	39.595	3	0.014415	11724	20190902_JH_WT_Ubi_2	55.33	11.702	6614900	0	0	2744600	0	0	0	0	3870400	0			3961	221	3473	11151;11152	11718;11719	11719				2
PNFGASLHILK	Unmodified	1195.6713	0.67134264	965	sp|P54803-5|GALC_HUMAN;sp|P54803-4|GALC_HUMAN;sp|P54803|GALC_HUMAN	yes	no	0	0	0	0	0		1				1	1	1		34.097	34.097	3	2.5819E-16	7574	20190821_JH_MUT_Ubi	181.53	111.27	23169000	0	3840400	0	0	0	4930500	3305400	11093000	0			3962	965	3474	11153;11154;11155;11156	11720;11721;11722;11723	11720				4
PNHTIYINNLNEK	Unmodified	1568.7947	0.79470526	482	sp|P09012|SNRPA_HUMAN	yes	yes	0	0	0	0	0				1	1					26.497	26.497	3	0.0046724	5788	20190902_JH_EV_Ubi_3	83.856	40.452	6843900	0	0	0	4299700	2544100	0	0	0	0			3963	482	3475	11157;11158	11724;11725	11725				2
PNIEGAPGAPIGNTFQHVQSLPTKK	GlyGly (K)	2714.414	0.41401233	326	sp|O94979-7|SC31A_HUMAN;sp|O94979-6|SC31A_HUMAN;sp|O94979-3|SC31A_HUMAN;sp|O94979-10|SC31A_HUMAN;sp|O94979-4|SC31A_HUMAN;sp|O94979-9|SC31A_HUMAN;sp|O94979-2|SC31A_HUMAN;sp|O94979|SC31A_HUMAN;sp|O94979-8|SC31A_HUMAN	yes	no	0	0	1	0	1		1								34.279	34.279	4	0.016204	7447	20190821_JH_MUT_Ubi	41.763	22.214	4022100	0	4022100	0	0	0	0	0	0	0			3964	326	3476	11159	11726	11726		302;303		1
PNIVLFSGSSHQDLSQR	Unmodified	1883.949	0.94897407	529	sp|P11908|PRPS2_HUMAN;sp|P11908-2|PRPS2_HUMAN	yes	no	0	0	0	0	0				1	1					34.121	34.121	3	0.00052188	8290	20190902_JH_EV_Ubi_3	91.812	58.608	8757800	0	0	0	3583500	5174300	0	0	0	0			3965	529	3477	11160;11161	11727;11728	11728				2
PNLDLLEQQHQLIQEALIFDNK	Unmodified	2618.3704	0.37041618	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	0	0			1					1	1	51.419	51.419	3	1.2153E-45	14963	20190902_JH_WT_Ubi_3	186.89	149.49	17958000	0	0	9004000	0	0	0	0	4754200	4200000			3966	214	3478	11162;11163;11164	11729;11730;11731	11731				3
PNMVTPGHACTQK	Oxidation (M)	1455.6599	0.65986803	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	1	0	1	1	2	1	1				1	15.603	15.603	3	0.0030012	2638	20190821_JH_EV_Ubi	94.023	23.535	29847000	1210200	479540	19774000	1567100	1355700	0	0	0	5460600			3967	400	3479	11165;11166;11167;11168;11169;11170;11171	11732;11733;11734;11735;11736;11737;11738	11732			192	7
PNMVTPGHACTQK	Unmodified	1439.665	0.66495341	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	0	0			1					1	1	19.276	19.276	3	0.00025584	3538	20190821_JH_WT_Ubi	117.2	63.963	37633000	0	0	9097000	0	0	0	0	9861500	18675000			3968	400	3479	11172;11173;11174	11739;11740;11741	11739				3
PNNKAMADELSEK	Oxidation (M);GlyGly (K)	1575.7199	0.71988533	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	1	1	1		1	1	1	1	1			20.156	20.156	3	1.1537E-05	3994	20190821_JH_EV_Ubi	135.02	72.61	196050000	3418400	0	5280600	125780000	630420	8595200	52349000	0	0			3969	1147	3480	11175;11176;11177;11178;11179;11180	11742;11743;11744;11745;11746;11747	11742		1141;1143	716	5
PNNKAMADELSEK	GlyGly (K)	1559.725	0.72497071	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1		1	1	1	22.543	22.543	3	5.3552E-12	5747	20190902_JH_WT_Ubi_3	160.56	99.869	216160000	13806000	7516900	34283000	12646000	26388000	0	12366000	54511000	54647000			3970	1147	3480	11181;11182;11183;11184;11185;11186;11187;11188	11748;11749;11750;11751;11752;11753;11754;11755	11755		1141;1143		8
PNNKAMADELSEK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1576.7039	0.70390092	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	1	1	1	1			1	1	1			2	1	19.817	19.817	2;3	0.00079485	4139	20190902_JH_EV_Ubi_2	122.52	91.292	52208000	0	0	3031900	7610600	9789400	0	0	17967000	13809000			3971	1147	3480	11189;11190;11191;11192;11193;11194	11756;11757;11758;11759;11760;11761	11756	377;378	1141;1143	716	6
PNNKAMADELSEKQVYDAHTK	Oxidation (M);2 GlyGly (K)	2632.2187	0.21874292	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	2	1	2		1	1	1	1	1		2	1	22.792	22.792	3;4;5	5.8822E-36	5952	20190902_JH_WT_Ubi_2	171.47	122.39	51706000	0	799830	19587000	6017400	3873900	980850	0	10528000	9919700			3972	1147	3481	11195;11196;11197;11198;11199;11200;11201;11202	11762;11763;11764;11765;11766;11767;11768;11769;11770	11768		1141;1143	716	9
PNNLSLVVHGPGDLR	Unmodified	1586.8529	0.85288884	1127	sp|Q00796-2|DHSO_HUMAN;sp|Q00796|DHSO_HUMAN	yes	no	0	0	0	0	0	1	1	1		1		1	1	1	34.73	34.73	3	1.9146E-15	8354	20190821_JH_EV_Ubi	163.62	114.34	97817000	13743000	10851000	20678000	0	8937100	0	13303000	16793000	13511000			3973	1127	3482	11203;11204;11205;11206;11207;11208;11209	11771;11772;11773;11774;11775;11776;11777	11771				7
PNNLSLVVHGPGDLR	Deamidation (NQ)	1587.8369	0.83690442	1127	sp|Q00796-2|DHSO_HUMAN;sp|Q00796|DHSO_HUMAN	yes	no	0	1	0	0	0						1	1			37.603	37.603	3	0.0044851	10248	20190902_JH_MUT_Ubi_2	85.976	40.086	934720	0	0	0	0	0	934720	0	0	0			3974	1127	3482	11210;11211	11778;11779	11778	363;364			2
PNPASPLPASPYGGPTPASYTTASTPAGPAFPVQVK	Unmodified	3492.7565	0.75653542	1360	sp|Q15654|TRIP6_HUMAN	yes	yes	0	0	0	0	0			1							47.358	47.358	3	1.6948E-07	12979	20190821_JH_WT_Ubi	79.071	55.12	1118400	0	0	1118400	0	0	0	0	0	0			3975	1360	3483	11212	11780	11780				1
PNPLYNQNTDMVQKSVSK	Oxidation (M);GlyGly (K)	2192.0532	0.053181143	1299	sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN	yes	no	0	0	1	1	1							1			26.644	26.644	3	8.3459E-05	5942	20190902_JH_MUT_Ubi_3	106.44	81.23	1916000	0	0	0	0	0	0	1916000	0	0			3976	1299	3484	11213	11781	11781		1364	811	1
PNQNLSEASGKGAELYAR	GlyGly (K)	2017.9817	0.98173076	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1		1					1		1	27.401	27.401	3	0.00051546	5012	20190821_JH_MUT_Ubi	87.088	46.975	5329700	0	1765300	0	0	0	0	2262400	0	1302000			3977	1614	3485	11214;11215;11216	11782;11783;11784	11782		1614		3
PNTLTLVHVR	Unmodified	1148.6666	0.66659162	301	sp|O75694-2|NU155_HUMAN;sp|O75694|NU155_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	29.117	29.117	3	0.00064032	7657	20190902_JH_WT_Ubi_3	131.09	75.074	26015000	0	815020	8218500	0	0	0	0	7653300	9328000			3978	301	3486	11217;11218;11219;11220	11785;11786;11787;11788	11788				4
PNWDYHAEIQAFGHR	Unmodified	1839.8441	0.84411507	1974	sp|Q9H9J2|RM44_HUMAN	yes	yes	0	0	0	0	0			1							35.027	35.027	4	0.00085742	8027	20190821_JH_WT_Ubi	94.09	60.825	3495300	0	0	3495300	0	0	0	0	0	0			3979	1974	3487	11221	11789	11789				1
PPPVPALPSKLPTFGAPEQLVDLK	GlyGly (K)	2624.4578	0.45777463	1290	sp|Q14258|TRI25_HUMAN	yes	yes	0	0	1	0	1							1			48.552	48.552	3	0.0056133	12827	20190902_JH_MUT_Ubi_3	56.766	24.611	261840	0	0	0	0	0	0	261840	0	0			3980	1290	3488	11222	11790	11790		1352;1353		1
PQEAAVAPEKPPASDETK	Unmodified	1863.9214	0.92142191	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	0	0	1			1	1					1	22.887	22.887	3	0.00080077	4304	20190821_JH_WT_Ubi	98.077	56.433	16784000	0	0	5018500	1646800	0	0	0	0	10119000			3981	718	3489	11223;11224;11225	11791;11792;11793	11792				3
PQEAAVAPEKPPASDETKAAEEPSK	GlyGly (K)	2690.3035	0.30351841	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	1	0	2	1			1				1		24.24	24.24	4	8.1974E-05	5071	20190902_JH_EV_Ubi_2	81.329	59.488	5514200	1350500	0	0	813010	0	0	0	3350800	0			3982	718	3490	11226;11227;11228	11794;11795;11796	11795		700		3
PQFLSAAPTEPCIPMNKYQHK	2 GlyGly (K);Deamidation (NQ)	2685.2679	0.26794172	1668	sp|Q8TB69|ZN519_HUMAN	yes	yes	0	1	2	0	1									1	43.875	43.875	3	0.025275	12849	20190902_JH_WT_Ubi_3	58.577	18.063	2039400	0	0	0	0	0	0	0	0	2039400			3983	1668	3491	11229	11797	11797	543	1665;1666		1
PQGHIGVDASAPQIGGSITGPSVEVQAPDIDVQGPGSK	Unmodified	3664.8333	0.83328219	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0	1	1	1							43.269	43.269	3	2.4221E-21	11445	20190821_JH_EV_Ubi	113.37	82.898	18055000	3896200	3434300	10724000	0	0	0	0	0	0			3984	1190	3492	11230;11231;11232	11798;11799;11800	11798				3
PQKFPHGGQEQAK	3 Deamidation (NQ)	1453.6838	0.68375782	34		yes	no	0	3	0	0	1				1						32.071	32.071	2	0.029383	7635	20190902_JH_EV_Ubi_2	51.276	9.4002	2039300000	0	0	0	2039300000	0	0	0	0	0	+		3985	34	3493	11233	11801	11801	727;728;729			0
PQKISIPDVGLHLK	GlyGly (K)	1657.9515	0.95154025	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1			34.897	34.897	4	0.021665	8725	20190902_JH_MUT_Ubi_3	58.116	33.395	1055300	0	0	0	0	0	0	1055300	0	0			3986	1190	3494	11234	11802	11802		1227		1
PQNILVTSSGQIK	Unmodified	1383.7722	0.7721789	1122	sp|Q00534|CDK6_HUMAN	yes	yes	0	0	0	0	0	1									32.157	32.157	2	0.0064592	7248	20190821_JH_EV_Ubi	85.958	62.604	1662400	1662400	0	0	0	0	0	0	0	0			3987	1122	3495	11235	11803	11803				1
PQNLLIDDKGTIK	GlyGly (K)	1567.857	0.85697116	432	sp|P06493|CDK1_HUMAN	yes	yes	0	0	1	0	1		1				1				30.203	30.203	3	0.00044377	6070	20190821_JH_MUT_Ubi	114.87	63.027	2499000	0	954440	0	0	0	1544600	0	0	0			3988	432	3496	11236;11237	11804;11805	11804		422;423		1
PQPDTAGAAGLIHR	Unmodified	1402.7317	0.73171107	26		yes	no	0	0	0	0	0			1			1		1	1	37.227	37.227	3	0.010337	10037	20190902_JH_MUT_Ubi_2	68.809	20.805	39337000	0	0	15562000	0	0	5377800	0	9632700	8765000	+		3989	26	3497	11238;11239;11240;11241	11806;11807;11808;11809	11806				4
PQQYTIPGILHYIQHEWAR	Unmodified	2349.2018	0.20183471	1209	sp|Q13033-2|STRN3_HUMAN;sp|Q13033|STRN3_HUMAN	yes	no	0	0	0	0	0			1							48.563	48.563	4	0.030441	13470	20190821_JH_WT_Ubi	37.009	10.172	1954400	0	0	1954400	0	0	0	0	0	0			3990	1209	3498	11242	11810	11810				1
PQSKLAQENMDLFK	Oxidation (M);GlyGly (K)	1777.8669	0.86688392	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	28.628	28.628	3	3.9333E-21	7965	20190902_JH_WT_Ubi_2	181.67	117.63	154630000	16480000	9381600	16956000	15664000	22956000	14050000	13302000	20811000	25030000			3991	769	3499	11243;11244;11245;11246;11247;11248;11249;11250;11251	11811;11812;11813;11814;11815;11816;11817;11818;11819	11818		752	482	9
PQSKLAQENMDLFK	GlyGly (K)	1761.872	0.8719693	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			32.882	32.882	3	0.0022975	7049	20190821_JH_MUT_Ubi	92.457	42.25	19373000	4872600	3827200	0	0	0	5882000	4791200	0	0			3992	769	3499	11252;11253;11254;11255	11820;11821;11822;11823	11821		752		3
PQSVFEELNNENKSTLQLEQQVKELQEK	2 GlyGly (K);3 Deamidation (NQ)	3559.7166	0.71658068	82	sp|I6L899-2|GOG8R_HUMAN;sp|A6NCC3-1|GOG8O_HUMAN;sp|I6L899|GOG8R_HUMAN;sp|F8WBI6|GOG8N_HUMAN;sp|A6NCC3|GOG8O_HUMAN	yes	no	0	3	2	0	2			1							42.686	42.686	3	0.032106	11048	20190821_JH_WT_Ubi	40.404	14.893	0	0	0	0	0	0	0	0	0	0			3993	82	3500	11256	11824	11824	743;744;745;746			1
PQTQNLGTPGPALSHSR	Unmodified	1759.8965	0.89654457	251	sp|O60504-2|VINEX_HUMAN;sp|O60504|VINEX_HUMAN	yes	no	0	0	0	0	0								1	1	25.266	25.266	3	0.00016462	6764	20190902_JH_WT_Ubi_2	103.01	61.388	6016900	0	0	0	0	0	0	0	2453900	3563000			3994	251	3501	11257;11258	11825;11826	11825				2
PQTTTEAKALVK	GlyGly (K)	1399.7671	0.76709352	1966	sp|Q9H7F0|AT133_HUMAN	yes	yes	0	0	1	0	1	1				1	1		1		22.45	22.45	3	0.0059365	5888	20190902_JH_WT_Ubi_2	92.247	15.055	4447800	726400	0	0	0	1498000	483740	0	1739700	0			3995	1966	3502	11259;11260;11261;11262	11827;11828;11829;11830	11830		1895		4
PQVQLHVQSQTQPVSLANTQPR	Unmodified	2455.2932	0.29316891	1372	sp|Q15942|ZYX_HUMAN;sp|Q15942-2|ZYX_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	32.438	32.438	3	1.2665E-129	7139	20190821_JH_WT_Ubi	264.1	202.09	104020000	5679500	11769000	36846000	3647400	2936100	6371500	6493500	16679000	13597000			3996	1372	3503	11263;11264;11265;11266;11267;11268;11269;11270;11271	11831;11832;11833;11834;11835;11836;11837;11838;11839;11840;11841	11839				11
PQVQLHVQSQTQPVSLANTQPR	Deamidation (NQ)	2456.2772	0.2771845	1372	sp|Q15942|ZYX_HUMAN;sp|Q15942-2|ZYX_HUMAN	yes	no	0	1	0	0	0						1				33.091	33.091	3	0.025937	8471	20190902_JH_MUT_Ubi_2	62.274	21.759	1766300	0	0	0	0	0	1766300	0	0	0			3997	1372	3503	11272	11842	11842	1052			1
PQYMVLVPSLLHTETPEK	Unmodified	2081.0867	0.086713102	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	0	0			1					1	1	43.843	43.843	3	1.7175E-08	11597	20190821_JH_WT_Ubi	126.07	56.812	11608000	0	0	7561700	0	0	0	0	1828400	2218400		+	3998	0	3504	11273;11274;11275	11843;11844;11845	11843				3
PQYMVLVPSLLHTETPEK	Oxidation (M)	2097.0816	0.081627725	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	1	0								1	1	40.519	40.519	3	4.338E-11	12082	20190902_JH_WT_Ubi_2	140.28	106	12742000	0	0	0	0	0	0	0	6094800	6646900		+	3999	0	3504	11276;11277	11846;11847	11846			0	2
PQYTEADVIPCTGEEPGEAKER	GlyGly (K)	2589.1653	0.16531037	1450	sp|Q5VTB9-3|RN220_HUMAN;sp|Q5VTB9|RN220_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			32.128	32.128	3	6.858E-22	7579	20190902_JH_MUT_Ubi_3	149.8	107.73	4587100	1016200	1384000	0	0	0	1269500	917470	0	0			4000	1450	3505	11278;11279;11280;11281	11848;11849;11850;11851	11851		1467		4
PRPDPSPEIEGDLQPATHGSR	Unmodified	2255.0931	0.093072122	930	sp|P51970|NDUA8_HUMAN	yes	yes	0	0	0	0	1			1							28.167	28.167	4	0.027933	5746	20190821_JH_WT_Ubi	46.209	8.5544	2997900	0	0	2997900	0	0	0	0	0	0			4001	930	3506	11282	11852	11852				1
PRPPPALGPEETSASAGLPK	Unmodified	1971.0425	0.042540102	1131	sp|Q01105|SET_HUMAN	yes	yes	0	0	0	0	1	1		1		1			1	1	31.009	31.009	3	2.8123E-30	8766	20190902_JH_WT_Ubi_2	177.07	132.76	16006000	771530	0	3579900	0	789730	0	0	6097000	4767300			4002	1131	3507	11283;11284;11285;11286;11287	11853;11854;11855;11856;11857	11856				5
PRPPQSSTGSTASPPVSTPVTGHK	Unmodified	2372.2084	0.20843623	1741	sp|Q93052|LPP_HUMAN	yes	yes	0	0	0	0	1			1						1	23.762	23.762	4	2.1682E-06	4531	20190821_JH_WT_Ubi	92.289	67.396	19322000	0	0	5097500	0	0	0	0	0	14224000			4003	1741	3508	11288;11289	11858;11859	11858				2
PSAAQLLEHPFVSSITSNK	GlyGly (K)	2139.096	0.096032235	315	sp|O94804|STK10_HUMAN	yes	yes	0	0	1	0	0									1	49.36	49.36	3	0.033808	14449	20190902_JH_WT_Ubi_3	47.09	14.91	0	0	0	0	0	0	0	0	0	0			4004	315	3509	11290	11860	11860				1
PSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF	Unmodified	3455.5237	0.52369453	1830	sp|Q96TA1-2|NIBL1_HUMAN;sp|Q96TA1|NIBL1_HUMAN	yes	no	0	0	0	0	0			1					1		33.594	33.594	3	0.0003902	9678	20190902_JH_WT_Ubi_2	54.003	38.569	4830300	0	0	2555100	0	0	0	0	2275200	0			4005	1830	3510	11291;11292	11861;11862	11862				2
PSEISKNVEK	GlyGly (K)	1243.6408	0.64083038	843	sp|P43353|AL3B1_HUMAN;sp|P43353-2|AL3B1_HUMAN	yes	no	0	0	1	0	1			1							17.947	17.947	3	0.013183	3266	20190821_JH_WT_Ubi	87.184	31.784	3579900	0	0	3579900	0	0	0	0	0	0			4006	843	3511	11293	11863	11863		819;820		1
PSIQALIHGLNR	Unmodified	1317.7517	0.75171823	130	sp|O00487|PSDE_HUMAN	yes	yes	0	0	0	0	0		1	1	1		1	1	1	1	37.912	37.912	3	3.3162E-17	9121	20190821_JH_WT_Ubi	171.67	102.07	161850000	0	13640000	66710000	1890800	0	15110000	12567000	16777000	35160000			4007	130	3512	11294;11295;11296;11297;11298;11299;11300	11864;11865;11866;11867;11868;11869;11870	11868				7
PSKASASGFADFTSFGNEEQQLAWAK	GlyGly (K)	2887.3413	0.3413009	2101	sp|Q9UBC2-2|EP15R_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1				44.021	44.021	3	1.6006E-12	12614	20190902_JH_MUT_Ubi_2	118.04	87.126	14861000	1790900	3885100	6919500	0	0	2265700	0	0	0			4008	2101	3513	11301;11302;11303;11304	11871;11872;11873;11874;11875;11876	11874		1973		6
PSKGPLQSVQVFGR	GlyGly (K)	1612.8685	0.8685389	1042	sp|P62249|RS16_HUMAN	yes	yes	0	0	1	0	1						1				32.661	32.661	3	0.032515	8317	20190902_JH_MUT_Ubi_2	55.176	27.846	1214900	0	0	0	0	0	1214900	0	0	0			4009	1042	3514	11305	11877	11877				1
PSKSTLLADDLEIK	GlyGly (K)	1642.8778	0.87776618	765	sp|P34910|EVI2B_HUMAN;sp|P34910-2|EVI2B_HUMAN	yes	no	0	0	1	0	1								1		34.85	34.85	3	0.029092	10104	20190902_JH_WT_Ubi_2	57.414	9.1299	8846000	0	0	0	0	0	0	0	8846000	0			4010	765	3515	11306	11878	11878		748		1
PSLKDGALESQDTENVPVTLSEENR	GlyGly (K)	2841.3628	0.3628242	187	sp|O15439|MRP4_HUMAN;sp|O15439-4|MRP4_HUMAN;sp|O15439-3|MRP4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1		1	36.179	36.179	3	3.55E-20	10187	20190902_JH_WT_Ubi_3	143.36	81.654	97306000	19258000	5991600	32199000	10176000	0	6648400	5409900	0	17622000			4011	187	3516	11307;11308;11309;11310;11311;11312;11313	11879;11880;11881;11882;11883;11884;11885	11885		169		7
PSNVSEKEKHQK	GlyGly (K);2 Deamidation (NQ)	1525.7372	0.73724996	2028	sp|Q9NSI8-2|SAMN1_HUMAN;sp|Q9NSI8|SAMN1_HUMAN	yes	no	0	2	1	0	2									1	28.349	28.349	2	0.033984	7482	20190902_JH_WT_Ubi_3	44.863	10.143	969570	0	0	0	0	0	0	0	0	969570			4012	2028	3517	11314	11886	11886	647;1277			0
PSPAISVSVSAPAFYAPQK	Unmodified	1916.0044	0.0043636815	1372	sp|Q15942|ZYX_HUMAN	yes	yes	0	0	0	0	0	1	1		1						42.972	42.972	3	1.2481E-06	11363	20190821_JH_EV_Ubi	118.5	81.326	6333500	3178100	1714800	0	1440600	0	0	0	0	0			4013	1372	3518	11315;11316;11317	11887;11888;11889	11887				3
PSPAPPSTTTAPDASGPQKR	GlyGly (K)	2076.0236	0.023595574	814	sp|P40855|PEX19_HUMAN	yes	yes	0	0	1	0	1		1	1					1	1	23.719	23.719	3	4.7892E-09	6058	20190902_JH_WT_Ubi_3	124.99	92.736	35667000	0	1579200	6764500	0	0	0	0	13811000	13513000			4014	814	3519	11318;11319;11320;11321	11890;11891;11892;11893	11893		790		4
PSPLTLAPHDFANIK	Unmodified	1619.8671	0.86714192	949	sp|P53618|COPB_HUMAN	yes	yes	0	0	0	0	0			1						1	38.221	38.221	3	0.02012	9309	20190821_JH_WT_Ubi	54.898	21.213	6928400	0	0	3547100	0	0	0	0	0	3381300			4015	949	3520	11322;11323	11894;11895	11894				2
PSQVLQPLWAASHTPDFFGSALR	Unmodified	2524.2863	0.28629262	473	sp|P08648|ITA5_HUMAN	yes	yes	0	0	0	0	0		1	1							49.988	49.988	3	2.1864E-07	13935	20190821_JH_WT_Ubi	105.68	72.539	5394300	0	980680	4413600	0	0	0	0	0	0			4016	473	3521	11324;11325	11896;11897	11897				2
PSSAAYQKAPTK	GlyGly (K)	1361.6939	0.69392858	763	sp|P34741|SDC2_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			17.038	17.038	3	0.0002126	3775	20190902_JH_MUT_Ubi_2	127.52	72.98	8209600	1821400	413240	0	0	2594200	2411500	969240	0	0			4017	763	3522	11326;11327;11328;11329;11330;11331	11898;11899;11900;11901;11902;11903	11902		746		6
PSSLDLVPNLPKGALPPSPALPR	GlyGly (K)	2449.3693	0.36929397	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1						1				45.494	45.494	3	0.002103	13235	20190902_JH_MUT_Ubi_2	65.416	49.11	818130	0	0	0	0	0	818130	0	0	0			4018	1614	3523	11332	11904	11904		1615		1
PSSLNNQLVSVDCKK	GlyGly (K)	1801.8992	0.89924668	2078	sp|Q9NZV1|CRIM1_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1	1			27.222	27.222	3	7.8792E-11	6033	20190902_JH_MUT_Ubi_3	149.32	112.38	35794000	7621400	0	0	5995400	9117800	8024700	5034400	0	0			4019	2078	3524	11333;11334;11335;11336;11337	11905;11906;11907;11908;11909	11909		1959;1960		5
PSSLNNQLVSVDCKK	GlyGly (K);Deamidation (NQ)	1802.8833	0.88326227	2078	sp|Q9NZV1|CRIM1_HUMAN	yes	yes	0	1	1	0	1		1				1				28.815	28.815	3	0.0055812	6855	20190902_JH_MUT_Ubi_2	79.337	30.15	2490200	0	528500	0	0	0	1961700	0	0	0			4020	2078	3524	11338;11339	11910;11911	11911	661;662;1282	1959;1960		2
PSSSPVIFAGGQAYTIQGQYAIPQPDLTK	Unmodified	3033.5448	0.54475173	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN	yes	no	0	0	0	0	0			1							48.893	48.893	3	0.00017412	13578	20190821_JH_WT_Ubi	68.565	47.001	1611100	0	0	1611100	0	0	0	0	0	0			4021	1342	3525	11340	11912	11912				1
PSVHVVMNLPAK	Oxidation (M)	1306.7067	0.70674187	1405	sp|Q32P41|TRM5_HUMAN	yes	yes	0	0	0	1	0				1						25.724	25.724	3	0.029559	5582	20190902_JH_EV_Ubi_2	60.08	37.849	2201700	0	0	0	2201700	0	0	0	0	0			4022	1405	3526	11341	11913	11913			862	1
PSVSKVEMQPTELVSK	Oxidation (M);GlyGly (K)	1887.9612	0.96117824	205	sp|O43491-2|E41L2_HUMAN;sp|O43491-3|E41L2_HUMAN;sp|O43491-4|E41L2_HUMAN;sp|O43491|E41L2_HUMAN	yes	no	0	0	1	1	1	1			1						28.311	28.311	3	0.005733	6333	20190902_JH_EV_Ubi_2	74.338	32.5	5328300	2845200	0	0	2483100	0	0	0	0	0			4023	205	3527	11342;11343	11914;11915	11915		187	83	2
PSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK	Unmodified	3418.4875	0.48752422	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN	no	no	0	0	0	0	0								1	1	29.072	29.072	3	7.4646E-09	7732	20190902_JH_WT_Ubi_3	98.722	82.447	6169100	0	0	0	0	0	0	0	2629400	3539800			4024	1200;1201	3528	11344;11345	11916;11917;11918	11918				3
PTDSRINFDSHEPLQSVTNK	GlyGly (K);3 Deamidation (NQ)	2401.1034	0.10336204	1990	sp|Q9HCK1|ZDBF2_HUMAN	yes	yes	0	3	1	0	1							1			56.752	56.752	3	0.030325	14120	20190902_JH_MUT_Ubi_3	47.397	6.195	0	0	0	0	0	0	0	0	0	0			4025	1990	3529	11346	11919	11919	635;636;1263	1913		1
PTEEHPAYTQIAKEHALAQAELLK	GlyGly (K)	2801.4348	0.43480735	173	sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN	yes	no	0	0	1	0	1						1				33.502	33.502	4	0.020704	8668	20190902_JH_MUT_Ubi_2	42.639	14.92	2645800	0	0	0	0	0	2645800	0	0	0			4026	173	3530	11347	11920	11920		146		1
PTHFTVYTK	Unmodified	1092.5604	0.56039521	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1					1	1	22.954	22.954	3	0.0042932	4316	20190821_JH_WT_Ubi	103.7	62.818	34339000	0	0	9047000	0	0	0	0	12417000	12875000			4027	282	3531	11348;11349;11350	11921;11922;11923	11921				3
PTHQPPQTKWYTPIK	GlyGly (K)	1935.0003	0.0002813566	993	sp|P58335-2|ANTR2_HUMAN;sp|P58335-4|ANTR2_HUMAN;sp|P58335|ANTR2_HUMAN	yes	no	0	0	1	0	1		1	2					1	1	26.763	26.763	3;4	0.0084837	5325	20190821_JH_WT_Ubi	69.261	34.307	97148000	0	2031200	35580000	0	0	0	0	36898000	22639000			4028	993	3532	11351;11352;11353;11354;11355	11924;11925;11926;11927;11928	11925		972		4
PTLQLVYQAVQALYHDPDPSGK	Unmodified	2439.2434	0.24342475	2243	sp|Q9Y5L0-5|TNPO3_HUMAN;sp|Q9Y5L0-3|TNPO3_HUMAN;sp|Q9Y5L0|TNPO3_HUMAN;sp|Q9Y5L0-1|TNPO3_HUMAN	yes	no	0	0	0	0	0	1				1					52.728	52.728	3	2.3777E-09	14201	20190821_JH_EV_Ubi	121.47	91.334	5136300	4175400	0	0	0	960870	0	0	0	0			4029	2243	3533	11356;11357	11929;11930	11929				2
PTQNASEKLQAPGKGLTSNK	GlyGly (K);4 Deamidation (NQ)	2186.0703	0.070270995	1541	sp|Q7Z7F0-4|KHDC4_HUMAN;sp|Q7Z7F0-3|KHDC4_HUMAN;sp|Q7Z7F0-2|KHDC4_HUMAN;sp|Q7Z7F0|KHDC4_HUMAN	yes	no	0	4	1	0	2			1							36.178	36.178	3	0.028935	8435	20190821_JH_WT_Ubi	50.722	17.414	6461300	0	0	6461300	0	0	0	0	0	0			4030	1541	3534	11358	11931	11931	492;493;1106;1107	1531		0
PTSNPQVVNEGGAKPELASQATEGSK	Unmodified	2595.2776	0.27763801	2058	sp|Q9NXG2|THUM1_HUMAN	yes	yes	0	0	0	0	1								1		27.494	27.494	3	7.3814E-07	7488	20190902_JH_WT_Ubi_2	98.015	72.817	1775500	0	0	0	0	0	0	0	1775500	0			4031	2058	3535	11359	11932	11932				1
PTTTPAPKEPTTPAPK	GlyGly (K)	1746.9152	0.91521432	42		yes	no	0	0	1	0	1		1			1	1	1			32.298	32.298	3	0.0032623	7655	20190902_JH_MUT_Ubi_3	78.615	28.527	16343000	0	4048400	0	0	1286700	6312200	4695300	0	0	+		4032	42	3536	11360;11361;11362;11363	11933;11934;11935;11936	11936		50		4
PTVFSEVTDNMR	Unmodified	1394.65	0.65001485	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	0	0	0			1							38.727	38.727	2	3.6222E-06	9425	20190821_JH_WT_Ubi	144.55	95.49	11911000	0	0	11911000	0	0	0	0	0	0			4033	865	3537	11364	11937	11937				0
PTVNIPSSATIGNR	Unmodified	1425.7576	0.75759147	2251	sp|Q9Y624|JAM1_HUMAN;sp|Q9Y624-2|JAM1_HUMAN	yes	no	0	0	0	0	0				1						33.102	33.102	2	0.00025405	7918	20190902_JH_EV_Ubi_2	118.23	51.313	1642700	0	0	0	1642700	0	0	0	0	0			4034	2251	3538	11365	11938	11938				0
PTWGNHTPIFR	Unmodified	1324.6677	0.66765425	381	sp|P00505-2|AATM_HUMAN;sp|P00505|AATM_HUMAN	yes	no	0	0	0	0	0	1			1	1			1	1	30.787	30.787	3	0.0031671	8732	20190902_JH_WT_Ubi_2	98.754	41.838	95037000	14647000	0	0	14057000	10054000	0	0	30271000	26007000			4035	381	3539	11366;11367;11368;11369;11370	11939;11940;11941;11942;11943	11942				5
PVAVALDTKGPEIR	GlyGly (K)	1578.873	0.87295558	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	0	1		1								31.947	31.947	3	0.0010996	6536	20190821_JH_MUT_Ubi	102.73	69.58	1597300	0	1597300	0	0	0	0	0	0	0			4036	556	3540	11371	11944	11944		548		1
PVCAVLLLFPITEK	Unmodified	1598.9106	0.91058664	570	sp|P15374|UCHL3_HUMAN	yes	yes	0	0	0	0	0			1					1	1	54.312	54.312	3	0.0097744	15541	20190821_JH_WT_Ubi	69.602	22.722	6803000	0	0	4700700	0	0	0	0	889420	1212900			4037	570	3541	11372;11373;11374	11945;11946;11947	11945				3
PVEAAVVAAAVPSSGSGVGGGGTAGPGTGGLPR	Unmodified	2759.4202	0.42021992	316	sp|O94826|TOM70_HUMAN	yes	yes	0	0	0	0	0			1		1			1	1	41.13	41.13	3	4.1776E-09	11829	20190902_JH_WT_Ubi_3	90.136	63.009	14626000	0	0	5278400	0	801780	0	0	3977600	4568000			4038	316	3542	11375;11376;11377;11378	11948;11949;11950;11951	11951				4
PVEDEDEAGLQKSLK	GlyGly (K)	1770.8636	0.86357268	1181	sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN	yes	no	0	0	1	0	1								1	1	27.326	27.326	3	0.00061743	7463	20190902_JH_WT_Ubi_2	103.83	75.668	10273000	0	0	0	0	0	0	0	4755300	5517300			4039	1181	3543	11379;11380	11952;11953	11952		1172;1173		2
PVEVIISSAKEMVGQK	GlyGly (K)	1827.9764	0.97643437	2158	sp|Q9UL19-2|HRSL4_HUMAN;sp|Q9UL19|HRSL4_HUMAN	yes	no	0	0	1	0	1		1				1				38.063	38.063	3	0.00046303	8879	20190821_JH_MUT_Ubi	100.4	76.172	2775800	0	1747500	0	0	0	1028300	0	0	0			4040	2158	3544	11381;11382	11954;11955	11954		2017		2
PVEVIISSAKEMVGQK	Oxidation (M);GlyGly (K)	1843.9713	0.97134899	2158	sp|Q9UL19-2|HRSL4_HUMAN;sp|Q9UL19|HRSL4_HUMAN	yes	no	0	0	1	1	1							1			31.593	31.593	3	0.0053266	7563	20190902_JH_MUT_Ubi_3	74.789	38.198	1388200	0	0	0	0	0	0	1388200	0	0			4041	2158	3544	11383	11956	11956		2017	1130	1
PVEVSPAVTKGLYIAK	GlyGly (K)	1785.0036	0.0036354	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	1			1		1		1	1		35.377	35.377	3	8.457E-05	10395	20190902_JH_WT_Ubi_2	110.25	88.477	20906000	0	0	8249000	0	1835300	0	2665200	8156700	0			4042	1603	3545	11384;11385;11386;11387	11957;11958;11959;11960	11960		1603		4
PVFHVGFLVK	Unmodified	1141.6648	0.6648007	674	sp|P24928|RPB1_HUMAN;sp|P24928-2|RPB1_HUMAN	yes	no	0	0	0	0	0		1	1				1	1	1	37.562	37.562	3	2.4684E-06	8752	20190821_JH_MUT_Ubi	150.05	125.82	13398000	0	1986600	7292900	0	0	0	1114000	2011800	992310			4043	674	3546	11388;11389;11390;11391;11392	11961;11962;11963;11964;11965	11961				5
PVGGDKNGGTR	GlyGly (K);Deamidation (NQ)	1171.5582	0.55816338	1143	sp|Q02878|RL6_HUMAN	yes	yes	0	1	1	0	1			1							8.0833	8.0833	2	0.035473	1533	20190821_JH_WT_Ubi	61.593	14.512	0	0	0	0	0	0	0	0	0	0			4044	1143	3547	11393	11966	11966	373			1
PVGHCLEAAAVLSK	Unmodified	1450.7602	0.76023401	522	sp|P11177|ODPB_HUMAN;sp|P11177-2|ODPB_HUMAN;sp|P11177-3|ODPB_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	29.641	29.641	3	8.1335E-11	8317	20190902_JH_WT_Ubi_2	152	117.25	28513000	0	0	6540300	0	0	1984600	1724600	7636900	10627000			4045	522	3548	11394;11395;11396;11397;11398	11967;11968;11969;11970;11971	11970				5
PVHHGVNQLK	Unmodified	1127.62	0.61997578	1022	sp|P61313-2|RL15_HUMAN;sp|P61313|RL15_HUMAN	yes	no	0	0	0	0	0	1	1	1							11.673	11.673	3	0.0017129	2226	20190821_JH_WT_Ubi	109.11	73.841	12633000	978630	499530	11155000	0	0	0	0	0	0			4046	1022	3549	11399;11400;11401	11972;11973;11974	11974				3
PVHLTAFLGYK	Unmodified	1244.6917	0.69174374	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1	1	1	1	36.583	36.583	3	1.8037E-07	9762	20190902_JH_MUT_Ubi_2	157.75	131	600060000	4198700	54433000	239140000	0	0	57916000	34824000	116940000	92610000			4047	804	3550	11402;11403;11404;11405;11406;11407;11408;11409	11975;11976;11977;11978;11979;11980;11981;11982	11978				8
PVIAAVHGGCIGGGVDLVTACDIR	Unmodified	2406.2148	0.21478394	1208	sp|Q13011|ECH1_HUMAN	yes	yes	0	0	0	0	0							1	1		40.399	40.399	3	2.3869E-06	10397	20190902_JH_MUT_Ubi_3	88.036	66.835	7184600	0	0	0	0	0	0	2583600	4601000	0			4048	1208	3551	11410;11411	11983;11984	11983				2
PVICATQMLESMIK	Oxidation (M)	1635.8034	0.80342073	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	1	0						1				42.402	42.402	2	0.010342	12098	20190902_JH_MUT_Ubi_2	89.231	64.955	4560600	0	0	0	0	0	4560600	0	0	0			4049	556	3552	11412	11985	11985			338;339	1
PVICATQMLESMIKK	2 Oxidation (M)	1779.8933	0.89329837	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	2	1	1	1	1					1		31.568	31.568	3	0.0046663	8874	20190902_JH_WT_Ubi_2	70.889	35.99	64083000	4744600	9005600	29638000	0	0	0	0	20694000	0			4050	556	3553	11413;11414;11415;11416	11986;11987;11988;11989	11989			338;339	4
PVIGSQYPLEK	Unmodified	1229.6656	0.66558856	1183	sp|Q08257-2|QOR_HUMAN;sp|Q08257-3|QOR_HUMAN;sp|Q08257|QOR_HUMAN	yes	no	0	0	0	0	0								1		33.011	33.011	2	0.021273	9431	20190902_JH_WT_Ubi_2	68.847	13.477	1770800	0	0	0	0	0	0	0	1770800	0			4051	1183	3554	11417	11990	11990				0
PVILTYHDIGLNHK	Unmodified	1618.8831	0.88312633	2119	sp|Q9UGV2|NDRG3_HUMAN;sp|Q9UGV2-2|NDRG3_HUMAN	yes	no	0	0	0	0	0	1				1					32.404	32.404	4	0.0055639	7661	20190902_JH_EV_Ubi_3	73.881	51.161	4524200	2343000	0	0	0	2181200	0	0	0	0			4052	2119	3555	11418;11419	11991;11992	11992				2
PVILTYHDIGMNHK	Oxidation (M)	1652.8345	0.83446158	1714	sp|Q92597|NDRG1_HUMAN	yes	yes	0	0	0	1	0					1	1		1		27.916	27.916	4	0.015341	6549	20190902_JH_MUT_Ubi_2	62.14	35.599	7201600	0	0	0	0	2524300	599390	0	4078000	0			4053	1714	3556	11420;11421;11422	11993;11994;11995	11994			974	3
PVIVEPLEQLDDEDGLPEK	Unmodified	2134.0681	0.06814573	658	sp|P23246-2|SFPQ_HUMAN;sp|P23246|SFPQ_HUMAN	yes	no	0	0	0	0	0									1	46.71	46.71	3	0.00013433	13754	20190902_JH_WT_Ubi_3	93.371	28.917	3913500	0	0	0	0	0	0	0	0	3913500			4054	658	3557	11423	11996	11996				1
PVKDGGGTNSITVR	GlyGly (K)	1513.7849	0.78486885	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1	1			1	1					21.302	21.302	3	3.008E-07	4459	20190902_JH_EV_Ubi_2	139.48	86.224	34969000	14191000	0	0	15197000	5580700	0	0	0	0			4055	760	3558	11424;11425;11426	11997;11998;11999	11998		740		3
PVKDGGGTNSITVR	GlyGly (K);Deamidation (NQ)	1514.7689	0.76888444	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	0	1				1						22.586	22.586	3	0.032322	4712	20190902_JH_EV_Ubi_2	100.54	58.446	2000900	0	0	0	2000900	0	0	0	0	0			4056	760	3558	11427	12000	12000	271	740		1
PVKPVEDEDEAGLQK	GlyGly (K)	1766.8687	0.86865806	1181	sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN	yes	no	0	0	1	0	1				1	1			1		24.558	24.558	3	5.399E-11	5228	20190902_JH_EV_Ubi_2	150.9	88.526	7816700	0	0	0	1311600	2952000	0	0	3553100	0			4057	1181	3559	11428;11429;11430	12001;12002;12003	12001		1172;1174		3
PVKPVEDEDEAGLQKSLK	GlyGly (K)	2095.0797	0.079713469	1181	sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN	yes	no	0	0	1	0	2		1	1	1	1	1		1	1	26.464	26.464	4	1.7677E-11	5737	20190902_JH_EV_Ubi_3	143.97	77.586	52380000	0	2098600	7086600	6575200	11867000	3404300	0	10682000	10667000			4058	1181	3560	11431;11432;11433;11434;11435;11436;11437	12004;12005;12006;12007;12008;12009;12010	12005		1172;1173;1174		7
PVLLLHPLGGWTK	Unmodified	1429.8446	0.84455598	197	sp|O43252|PAPS1_HUMAN	yes	yes	0	0	0	0	0	1	1		1	1	1	1		1	41.09	41.09	3	3.6404E-06	10758	20190821_JH_EV_Ubi	139.31	139.31	47449000	5833600	12459000	0	3239200	3305400	14003000	7104000	0	1505400			4059	197	3561	11438;11439;11440;11441;11442;11443;11444	12011;12012;12013;12014;12015;12016;12017;12018	12011				8
PVMQALLHIIR	Oxidation (M)	1305.7591	0.75911179	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	1	0			1							34.991	34.991	3	0.011777	8020	20190821_JH_WT_Ubi	81.771	54.723	1219000	0	0	1219000	0	0	0	0	0	0			4060	341	3562	11445	12019	12019			159	1
PVMQALLHIIR	Unmodified	1289.7642	0.76419717	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	0	0			1							42.405	42.405	3	0.013447	10935	20190821_JH_WT_Ubi	82.831	65.664	0	0	0	0	0	0	0	0	0	0			4061	341	3562	11446	12020	12020				1
PVNAIIEHVR	Unmodified	1146.6509	0.65094155	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	27.386	27.386	3	0.0010716	5478	20190821_JH_WT_Ubi	123.51	96.624	70945000	4622600	0	15969000	0	0	0	0	25964000	24389000			4062	1518	3563	11447;11448;11449;11450	12021;12022;12023;12024	12022				4
PVNAIIEHVR	Deamidation (NQ)	1147.635	0.63495714	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	1	0	0	0									1	29.553	29.553	3	0.035272	7923	20190902_JH_WT_Ubi_3	49.35	21.579	0	0	0	0	0	0	0	0	0	0			4063	1518	3563	11451	12025	12025	482			1
PVPAAPVPSPVAPAPVPSR	Unmodified	1805.02	0.019954166	2149	sp|Q9UK76|JUPI1_HUMAN;sp|Q9UK76-3|JUPI1_HUMAN	yes	no	0	0	0	0	0				1	1			1	1	39.076	39.076	3	3.7672E-05	9678	20190902_JH_EV_Ubi_3	104.26	65.47	13601000	0	0	0	2913200	1642700	0	0	4924700	4120300			4064	2149	3564	11452;11453;11454;11455	12026;12027;12028;12029;12030	12027				5
PVQVIGALIGK	Deamidation (NQ)	1094.6699	0.66994566	1523	sp|Q7L5N1|CSN6_HUMAN	yes	yes	0	1	0	0	0				1						42.112	42.112	2	0.023694	10634	20190902_JH_EV_Ubi_2	78.334	56.203	0	0	0	0	0	0	0	0	0	0			4065	1523	3565	11456	12031	12031	1100			1
PVRPPAPGHGFPLIK	Unmodified	1581.9144	0.91436688	1613	sp|Q8N3F8|MILK1_HUMAN	yes	yes	0	0	0	0	1	1		1		1					30.648	30.648	4	0.012309	6982	20190902_JH_EV_Ubi_3	67.952	45.72	13606000	4587900	0	5375000	0	3643200	0	0	0	0			4066	1613	3566	11457;11458;11459	12032;12033;12034	12033				3
PVSAVKPTVAPPLAEPGAGK	Unmodified	1885.0673	0.067298289	791	sp|P36957-2|ODO2_HUMAN;sp|P36957|ODO2_HUMAN	yes	no	0	0	0	0	1			1		1			1		31.788	31.788	3	0.00011547	6943	20190821_JH_WT_Ubi	103.99	58.265	16217000	0	0	5593800	0	1654000	0	0	8969600	0			4067	791	3567	11460;11461;11462	12035;12036;12037	12036				3
PVSGQDTSGNTEGSPAAEKAQLK	GlyGly (K)	2385.1408	0.14081018	1820	sp|Q96S66-4|CLCC1_HUMAN;sp|Q96S66-3|CLCC1_HUMAN;sp|Q96S66-2|CLCC1_HUMAN;sp|Q96S66|CLCC1_HUMAN	yes	no	0	0	1	0	1							1			23.832	23.832	3	5.9179E-05	5139	20190902_JH_MUT_Ubi_3	85.518	41.572	1379200	0	0	0	0	0	0	1379200	0	0			4068	1820	3568	11463	12038	12038		1785		1
PVSLLASPWTSPTWLK	Unmodified	1781.9716	0.97160699	399	sp|P04062-3|GLCM_HUMAN;sp|P04062-4|GLCM_HUMAN;sp|P04062-5|GLCM_HUMAN;sp|P04062-2|GLCM_HUMAN;sp|P04062|GLCM_HUMAN	yes	no	0	0	0	0	0			1							52.434	52.434	2	2.0105E-07	14814	20190821_JH_WT_Ubi	127.52	83.891	1142000	0	0	1142000	0	0	0	0	0	0			4069	399	3569	11464	12039	12039				1
PVSSAASVYAGAGGSGSR	Unmodified	1579.759	0.75904803	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	2	26.905	26.905	2;3	1.8269E-27	7015	20190902_JH_WT_Ubi_3	181.97	134.54	114030000	5530700	4049000	20933000	7470700	5772600	10512000	5974300	31071000	22718000			4070	430	3570	11465;11466;11467;11468;11469;11470;11471;11472;11473;11474	12040;12041;12042;12043;12044;12045;12046;12047;12048;12049	12048				9
PVTQVTWHGR	Unmodified	1179.6149	0.6148904	1277	sp|Q14137-2|BOP1_HUMAN;sp|Q14137|BOP1_HUMAN	yes	no	0	0	0	0	0			1							24.095	24.095	3	0.010223	4581	20190821_JH_WT_Ubi	84.817	51.073	1647400	0	0	1647400	0	0	0	0	0	0			4071	1277	3571	11475	12050	12050				1
PVTTPEEIAQVATISANGDK	Deamidation (NQ)	2041.0215	0.021529888	515	sp|P10809|CH60_HUMAN	yes	yes	0	1	0	0	0	1	1	1		1				1	43.381	43.381	3	2.4063E-49	12596	20190902_JH_WT_Ubi_3	205.15	140.11	52379000	4138800	808390	19276000	0	2640000	0	0	0	25516000			4072	515	3572	11476;11477;11478;11479;11480	12051;12052;12053;12054;12055	12055	199			5
PVTTPEEIAQVATISANGDK	Unmodified	2040.0375	0.037514303	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	0	0					1					42.201	42.201	3	0.017236	10687	20190902_JH_EV_Ubi_3	58.123	24.577	0	0	0	0	0	0	0	0	0	0			4073	515	3572	11481	12056	12056				1
PVVAEFHGTK	Unmodified	1083.5713	0.57129425	16	CON__Q29443;CON__Q0IIK2	yes	no	0	0	0	0	0	1			1	1			1	1	22.454	22.454	3	0.0018379	5874	20190902_JH_WT_Ubi_2	108.43	60.563	8968400	228180	0	0	414710	439380	0	0	4316300	3569900		+	4074	16	3573	11482;11483;11484;11485;11486	12057;12058;12059;12060;12061	12060				5
PVVGIIYPPPEVR	Unmodified	1434.8235	0.82348619	1352	sp|Q15459-2|SF3A1_HUMAN;sp|Q15459|SF3A1_HUMAN	yes	no	0	0	0	0	0	1		1				1			42.674	42.674	2	0.0025726	11137	20190821_JH_WT_Ubi	100.48	63.892	5052100	1517800	0	2862900	0	0	0	671440	0	0			4075	1352	3574	11487;11488;11489	12062;12063;12064	12064				3
PVVSFIAGLTAPPGR	Unmodified	1480.8402	0.84019889	948	sp|P53597|SUCA_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	46.597	46.597	3	3.3486E-05	12167	20190821_JH_MUT_Ubi	119.69	97.634	100080000	16653000	8780400	18197000	7095200	9828900	7910200	8328000	9485700	13804000			4076	948	3575	11490;11491;11492;11493;11494;11495;11496;11497;11498	12065;12066;12067;12068;12069;12070;12071;12072;12073	12068				9
PVVSTEAPPIIFATPTK	Unmodified	1766.9818	0.98183733	141	sp|O14548|COX7R_HUMAN	yes	yes	0	0	0	0	0									1	44.582	44.582	2	0.0031389	13018	20190902_JH_WT_Ubi_3	82.85	45.129	1183400	0	0	0	0	0	0	0	0	1183400			4077	141	3576	11499	12074	12074				0
PVVSTISKGGYLQGNVNGR	GlyGly (K);Deamidation (NQ)	2060.0651	0.065066458	2191	sp|Q9UPY5|XCT_HUMAN	yes	yes	0	1	1	0	1	1			1						32.048	32.048	3	2.4191E-08	7313	20190821_JH_EV_Ubi	133.9	107.09	2732300	1211400	0	0	1520900	0	0	0	0	0			4078	2191	3577	11500;11501	12075;12076	12075	699	2048		2
PVYIPEVELNHK	Unmodified	1436.7664	0.76636524	1290	sp|Q14258|TRI25_HUMAN	yes	yes	0	0	0	0	0			1	1	1			1	1	35.019	35.019	3	0.0025105	9773	20190902_JH_WT_Ubi_3	99.539	71.895	12040000	0	0	3304000	712000	896000	0	0	3610800	3517100			4079	1290	3578	11502;11503;11504;11505;11506	12077;12078;12079;12080;12081	12081				5
PWLAYPHYKPPEK	Unmodified	1624.8402	0.84019889	2128	sp|Q9UHG3-2|PCYOX_HUMAN;sp|Q9UHG3|PCYOX_HUMAN	yes	no	0	0	0	0	1	1									30.755	30.755	4	0.037124	6693	20190821_JH_EV_Ubi	55.776	28.441	809550	809550	0	0	0	0	0	0	0	0			4080	2128	3579	11507	12082	12082				1
PWLGLDHFNK	Unmodified	1225.6244	0.62439245	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	0	0	0			1			1				35.844	35.844	3	0.0094572	8382	20190821_JH_WT_Ubi	86.898	4.1487	1636400	0	0	1145400	0	0	490970	0	0	0			4081	1739	3580	11508;11509	12083;12084	12084				2
PWSQHYHQGYY	Unmodified	1464.6211	0.62109799	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	0	0	0	1	1	1	1		1	1	1	1	25.882	25.882	3	0.0058279	7022	20190902_JH_WT_Ubi_2	91.658	77.401	404600000	6500900	12075000	115490000	9674600	0	23290000	24072000	120420000	93079000			4082	1128	3581	11510;11511;11512;11513;11514;11515;11516;11517	12085;12086;12087;12088;12089;12090;12091;12092	12091				8
PWVSDFSHPHYLAGR	Unmodified	1767.8481	0.84813781	1795	sp|Q96KP4-2|CNDP2_HUMAN;sp|Q96KP4|CNDP2_HUMAN	yes	no	0	0	0	0	0			1					1	1	33.876	33.876	4	6.8494E-05	7633	20190821_JH_WT_Ubi	112.02	75.995	50400000	0	0	19494000	0	0	0	0	15650000	15256000			4083	1795	3582	11518;11519;11520	12093;12094;12095	12093				3
PYAELWMGTHPR	Unmodified	1456.6922	0.69215444	768	sp|P34949-2|MPI_HUMAN;sp|P34949|MPI_HUMAN	yes	no	0	0	0	0	0			1							33.89	33.89	3	0.0079724	7621	20190821_JH_WT_Ubi	80.834	34.482	1377400	0	0	1377400	0	0	0	0	0	0			4084	768	3583	11521	12096	12096				1
PYCNHPCYAAMFGPK	Oxidation (M)	1827.7531	0.75311649	903	sp|P50238|CRIP1_HUMAN	yes	yes	0	0	0	1	0	1	1	1	1	1	1	1	1		28.06	28.06	3	0.00047241	6556	20190902_JH_MUT_Ubi_2	104.94	46.668	50882000	3745200	4055400	2919200	4091700	7446100	9996800	12398000	6229700	0			4085	903	3584	11522;11523;11524;11525;11526;11527;11528;11529	12097;12098;12099;12100;12101;12102;12103;12104	12101			568	8
PYCNHPCYAAMFGPK	Unmodified	1811.7582	0.75820187	903	sp|P50238|CRIP1_HUMAN	yes	yes	0	0	0	0	0	1	1		1		1	1	1		31.99	31.99	3	1.5628E-05	6714	20190821_JH_MUT_Ubi	122.46	93.156	19780000	1632600	3391900	0	1123600	0	4312100	5453200	3867000	0			4086	903	3584	11530;11531;11532;11533;11534;11535	12105;12106;12107;12108;12109;12110	12107				6
PYDGIPASEISSILEKGER	GlyGly (K)	2174.0855	0.085527128	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	43.772	43.772	3	2.094E-60	11665	20190821_JH_EV_Ubi	217.91	162.9	303410000	67312000	26749000	50381000	24067000	17268000	26374000	42679000	20736000	27849000			4087	382	3585	11536;11537;11538;11539;11540;11541;11542;11543;11544	12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121	12112		343		11
PYFPIPEEYTFIQNVPLEDR	Deamidation (NQ)	2467.1947	0.19474323	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	1	0	0	0			1							53.938	53.938	3	0.0236	15413	20190821_JH_WT_Ubi	77.137	48.324	0	0	0	0	0	0	0	0	0	0			4088	1128	3586	11545	12122	12122	987			1
PYFPIPEEYTFIQNVPLEDR	Unmodified	2466.2107	0.21072764	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	0	0	0								1		54.093	54.093	3	2.6332E-09	16118	20190902_JH_WT_Ubi_2	125.51	84.659	7726300	0	0	0	0	0	0	0	7726300	0			4089	1128	3586	11546	12123	12123				1
PYGPMSVGLDFSLPGMEHVYGIPEHADNLR	2 Oxidation (M)	3329.5485	0.54853326	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	2	0		1	1						1	44.121	44.121	4	0.0025319	11664	20190821_JH_WT_Ubi	53.751	32.696	17796000	0	2526500	7905500	0	0	0	0	0	7363800			4090	1304	3587	11547;11548;11549	12124;12125;12126	12125			815;816	3
PYGPMSVGLDFSLPGMEHVYGIPEHADNLR	Oxidation (M)	3313.5536	0.55361863	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	1	0						1				46.714	46.714	4	0.0023736	13579	20190902_JH_MUT_Ubi_2	50.029	26.82	694880	0	0	0	0	0	694880	0	0	0			4091	1304	3587	11550	12127	12127			815;816	1
PYIQVDIGGGQTK	Unmodified	1374.7143	0.71432967	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0	1				1		1			35.024	35.024	2	0.0012084	8527	20190821_JH_EV_Ubi	109.24	26.231	42655000	17432000	0	0	0	11783000	0	13440000	0	0			4092	517	3588	11551;11552;11553	12128;12129;12130	12128				2
PYLFLDSTHK	Unmodified	1219.6237	0.62372375	219	sp|O43795-2|MYO1B_HUMAN;sp|O43795|MYO1B_HUMAN	yes	no	0	0	0	0	0								1		33.758	33.758	3	0.010223	9692	20190902_JH_WT_Ubi_2	84.817	29.447	535410	0	0	0	0	0	0	0	535410	0			4093	219	3589	11554	12131	12131				1
PYNFLAHGVLPDSGHLHPLLK	Unmodified	2324.243	0.24297124	2204	sp|Q9Y285-2|SYFA_HUMAN;sp|Q9Y285|SYFA_HUMAN	yes	no	0	0	0	0	0		1	1			2		1	1	38.88	38.88	4;5	1.2038E-07	11500	20190902_JH_WT_Ubi_2	110.26	65.693	207910000	0	3646500	96329000	0	0	6427400	0	41442000	60070000			4094	2204	3590	11555;11556;11557;11558;11559;11560	12132;12133;12134;12135;12136;12137	12136				5
PYPKPAPSSGK	GlyGly (K)	1241.6404	0.64043645	364	sp|O95832|CLD1_HUMAN	yes	yes	0	0	1	0	1					1					17.854	17.854	3	0.014137	3682	20190902_JH_EV_Ubi_3	80.706	39.258	9367900	0	0	0	0	9367900	0	0	0	0			4095	364	3591	11561	12138	12138		325		1
PYQLIAQDNETEKPIDSETK	GlyGly (K)	2432.1707	0.17071332	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	0	1		1			1					31.888	31.888	3	8.4932E-40	7459	20190902_JH_EV_Ubi_3	191.61	122.24	7179900	0	1604200	0	0	5575700	0	0	0	0			4096	836	3592	11562;11563	12139;12140	12139		805;806		2
PYQLIAQDNETEKPIDSETKM	Oxidation (M);GlyGly (K)	2579.2061	0.20611255	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	1	2	1	1		1	1	1				31.95	31.95	3	1.0799E-28	7518	20190902_JH_EV_Ubi_2	164.97	124.54	37290000	10858000	1420000	0	13567000	8933500	2511200	0	0	0			4097	836	3593	11564;11565;11566;11567;11568	12141;12142;12143;12144;12145	12142		805;806	530	5
PYQLIAQDNETEKPIDSETKM	GlyGly (K)	2563.2112	0.21119793	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	1	0	2	1									34.544	34.544	3	0.0017619	8224	20190821_JH_EV_Ubi	83.948	34.899	3219100	3219100	0	0	0	0	0	0	0	0			4098	836	3593	11569	12146	12146		805;806		1
PYQLIAQDNETEKPIDSETKM	Oxidation (M);2 GlyGly (K)	2693.249	0.24904	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	0	2	1	2				1	1		1			31.92	31.92	3	1.5676E-21	7624	20190902_JH_EV_Ubi_3	150.9	118.07	10607000	0	0	0	6459600	3556800	0	590590	0	0			4099	836	3593	11570;11571;11572	12147;12148;12149	12148		805;806	530	3
PYQLIAQDNETEKPIDSETKM	Oxidation (M);GlyGly (K);Deamidation (NQ)	2580.1901	0.19012813	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	1	1	1	2				1	1					32.557	32.557	3	4.1504E-05	7785	20190902_JH_EV_Ubi_2	89.557	50.624	2220000	0	0	0	1038800	1181100	0	0	0	0			4100	836	3593	11573;11574	12150;12151	12150	292;923;924	805;806	530	2
PYQLIAQDNETEKPIDSETKM	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	2694.2331	0.23305558	836	sp|P43003-2|EAA1_HUMAN;sp|P43003|EAA1_HUMAN	yes	no	0	1	2	1	2					1					32.766	32.766	3	8.6039E-06	7871	20190902_JH_EV_Ubi_3	94.973	68.231	436450	0	0	0	0	436450	0	0	0	0			4101	836	3593	11575	12152	12152	292;923;924	805;806	530	1
PYQYPALTPEQK	Deamidation (NQ)	1434.7031	0.70309628	400	sp|P04075|ALDOA_HUMAN	yes	yes	0	1	0	0	0								1		33.926	33.926	2	0.0080402	9708	20190902_JH_WT_Ubi_2	103.08	25.55	7029300	0	0	0	0	0	0	0	7029300	0			4102	400	3594	11576	12153	12153	814			1
PYSFIEFDTFIQKTK	GlyGly (K)	1976.9884	0.98837927	288	sp|O75396|SC22B_HUMAN	yes	yes	0	0	1	0	1			1							45.802	45.802	3	7.7177E-11	12357	20190821_JH_WT_Ubi	147.39	53.623	3556700	0	0	3556700	0	0	0	0	0	0			4103	288	3595	11577	12154	12154		281		1
PYVEEGLHPQIIIR	Unmodified	1662.9093	0.90934108	1850	sp|Q99832|TCPH_HUMAN;sp|Q99832-4|TCPH_HUMAN;sp|Q99832-3|TCPH_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	36.523	36.523	3	7.7973E-05	8667	20190821_JH_WT_Ubi	118.61	75.224	69322000	6569700	5333100	19296000	4287600	2709300	5696300	4507000	11589000	9333900			4104	1850	3596	11578;11579;11580;11581;11582;11583;11584;11585;11586	12155;12156;12157;12158;12159;12160;12161;12162;12163	12161				9
PYVENIWALLLK	Unmodified	1457.8282	0.82823722	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN	yes	no	0	0	0	0	0								1		55.296	55.296	2	0.00052178	16392	20190902_JH_WT_Ubi_2	121.29	76.151	1740400	0	0	0	0	0	0	0	1740400	0			4105	1557	3597	11587	12164	12164				1
QAHLCVLASNCDEPMYVK	Oxidation (M)	2149.9595	0.95948045	677	sp|P25398|RS12_HUMAN	yes	yes	0	0	0	1	0		1								32.072	32.072	3	0.0028065	6575	20190821_JH_MUT_Ubi	72.446	25.783	820600	0	820600	0	0	0	0	0	0	0			4106	677	3598	11588	12165	12165			419	1
QAHLCVLASNCDEPMYVK	Unmodified	2133.9646	0.96456583	677	sp|P25398|RS12_HUMAN	yes	yes	0	0	0	0	0			1							34.105	34.105	3	0.00030007	7694	20190821_JH_WT_Ubi	89.866	46.496	4165900	0	0	4165900	0	0	0	0	0	0			4107	677	3598	11589	12166	12166				1
QAKAELATLQAR	2 Deamidation (NQ)	1300.6987	0.69867961	2185	sp|Q9UPN4-3|CP131_HUMAN;sp|Q9UPN4-2|CP131_HUMAN;sp|Q9UPN4|CP131_HUMAN	yes	no	0	2	0	0	1		1			1				1	24.018	24.018	3	0.016482	5048	20190902_JH_EV_Ubi_3	92.611	33.346	161460000	0	23368000	0	0	68699000	0	0	0	69394000			4108	2185	3599	11590;11591;11592	12167;12168;12169	12167	1315;1316			3
QALQDLLSEYMNNAGKKER	2 Deamidation (NQ)	2209.0685	0.068496856	2140	sp|Q9UI47-2|CTNA3_HUMAN;sp|Q9UI47|CTNA3_HUMAN	yes	no	0	2	0	0	2								1		34.857	34.857	4	0.012125	10105	20190902_JH_WT_Ubi_2	57.973	13.582	5156200	0	0	0	0	0	0	0	5156200	0			4109	2140	3600	11593	12170	12170	678;679;1302			1
QAMFLNLVYKSLK	GlyGly (K);2 Deamidation (NQ)	1669.8749	0.87492941	1151	sp|Q03701|CEBPZ_HUMAN	yes	yes	0	2	1	0	1			1							46.608	46.608	2	0.030673	12657	20190821_JH_WT_Ubi	50.034	14.538	1600700	0	0	1600700	0	0	0	0	0	0			4110	1151	3601	11594	12171	12171	379;996			0
QANWLSVSNIIQLGGTIIGSAR	Unmodified	2297.2492	0.24917883	604	sp|P17858|PFKAL_HUMAN;sp|P17858-2|PFKAL_HUMAN	yes	no	0	0	0	0	0			1							56.179	56.179	3	5.9528E-16	16092	20190821_JH_WT_Ubi	139.38	92.511	6666500	0	0	6666500	0	0	0	0	0	0			4111	604	3602	11595	12172	12172				1
QAQQERDELADEIANSSGK	Unmodified	2087.972	0.97195393	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	1			1							29.183	29.183	3	0.0051043	6067	20190821_JH_WT_Ubi	76.573	39.982	4489600	0	0	4489600	0	0	0	0	0	0			4112	776	3603	11596	12173	12173				1
QASNSPKVSEQLLK	GlyGly (K)	1641.8686	0.86859848	2094	sp|Q9P2F8|SI1L2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1				24.44	24.44	3	0.010672	5179	20190902_JH_EV_Ubi_2	72.705	24.192	66168000	7035800	7361800	32411000	7201500	0	12158000	0	0	0			4113	2094	3604	11597;11598;11599;11600;11601	12174;12175;12176;12177;12178	12175		1968		5
QATLTLTQGPSCWDDVLIPNR	2 Deamidation (NQ)	2386.1475	0.14747546	232	sp|O60260-3|PRKN_HUMAN;sp|O60260-5|PRKN_HUMAN;sp|O60260-8|PRKN_HUMAN;sp|O60260|PRKN_HUMAN	yes	no	0	2	0	0	0									1	29.967	29.967	3	0.033603	8074	20190902_JH_WT_Ubi_3	43.848	15.018	0	0	0	0	0	0	0	0	0	0			4114	232	3605	11602	12179	12179	73;779			1
QATTIIADNIIFLSDQTK	Unmodified	1991.0575	0.057521464	1158	sp|Q04837|SSBP_HUMAN	yes	yes	0	0	0	0	0			1							49.693	49.693	3	0.0053268	13881	20190821_JH_WT_Ubi	63.918	17.6	1278800	0	0	1278800	0	0	0	0	0	0			4115	1158	3606	11603	12180	12180				1
QAVLGAGLPISTPCTTINK	Unmodified	1940.0401	0.040097261	673	sp|P24752-2|THIL_HUMAN;sp|P24752|THIL_HUMAN	yes	no	0	0	0	0	0	1		1							42.528	42.528	2	1.5489E-09	11183	20190821_JH_EV_Ubi	133.48	84.502	5127900	1693500	0	3434400	0	0	0	0	0	0			4116	673	3607	11604;11605	12181;12182	12181				1
QCIRENGNVAKTPR	2 Deamidation (NQ)	1643.805	0.80495237	850	sp|P46013-2|KI67_HUMAN;sp|P46013|KI67_HUMAN	yes	no	0	2	0	0	2								1		40.694	40.694	3	0.021181	11988	20190902_JH_WT_Ubi_2	60.364	23.183	497220	0	0	0	0	0	0	0	497220	0			4117	850	3608	11606	12183	12183	301;302			0
QDEEINQIEEERTKQICK	2 GlyGly (K);Deamidation (NQ)	2518.1606	0.16055934	1963	sp|Q9H788-2|SH24A_HUMAN;sp|Q9H788|SH24A_HUMAN	yes	no	0	1	2	0	2								1		43.43	43.43	3	0.0020803	13005	20190902_JH_WT_Ubi_2	97.823	29.649	5206100	0	0	0	0	0	0	0	5206100	0			4118	1963	3609	11607	12184	12184	1250	1892;1893		1
QDELHRKALQTLER	Deamidation (NQ)	1736.9169	0.91694566	2168	sp|Q9ULT0|TTC7A_HUMAN;sp|Q9ULT0-4|TTC7A_HUMAN	yes	no	0	1	0	0	2						1				35.598	35.598	2	0.023323	9536	20190902_JH_MUT_Ubi_2	55.721	19.136	573570	0	0	0	0	0	573570	0	0	0			4119	2168	3610	11608	12185	12185	1309			1
QDKEVFQQNMK	GlyGly (K);2 Deamidation (NQ)	1509.677	0.67695789	1310	sp|Q14940|SL9A5_HUMAN	yes	yes	0	2	1	0	1				1						32.883	32.883	2	0.028623	7886	20190902_JH_EV_Ubi_2	66.692	11.71	555140	0	0	0	555140	0	0	0	0	0			4120	1310	3611	11609	12186	12186	418;1032;1033	1369		0
QDQIHSSIVSTLLALMDGLDNR	Oxidation (M);2 Deamidation (NQ)	2443.1901	0.19006855	2164	sp|Q9ULI0-2|ATD2B_HUMAN;sp|Q9ULI0|ATD2B_HUMAN	yes	no	0	2	0	1	0									1	37.466	37.466	3	0.017627	10600	20190902_JH_WT_Ubi_3	54.058	8.7008	0	0	0	0	0	0	0	0	0	0			4121	2164	3612	11610	12187	12187	690;1307		1132	1
QEENKAGLLDLPDASVNGWSSDEEK	GlyGly (K);Deamidation (NQ)	2845.289	0.28899056	1242	sp|Q13488-2|VPP3_HUMAN;sp|Q13488|VPP3_HUMAN	yes	no	0	1	1	0	1	1		1							42.016	42.016	3	1.083E-05	10763	20190821_JH_WT_Ubi	96.777	63.146	4129600	1191900	0	2937700	0	0	0	0	0	0			4122	1242	3613	11611;11612	12188;12189	12189	404	1310		2
QEESEQIKTLNNK	GlyGly (K)	1673.822	0.82204222	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1	1									21.756	21.756	3	0.002878	3794	20190821_JH_EV_Ubi	96.82	36.475	3275900	3275900	0	0	0	0	0	0	0	0		+	4123	8;19	3614	11613	12190	12190		29;30		1
QEIECQNQEYSLLLSIKMRLEK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	2884.3834	0.38342499	13	sp|P35527|K1C9_HUMAN;CON__P35527	yes	no	0	3	1	1	2					1					35.127	35.127	3	0.019797	8631	20190902_JH_EV_Ubi_3	50.425	7.2261	2864800	0	0	0	0	2864800	0	0	0	0		+	4124	13	3615	11614	12191	12191	11;723;724	38	21	1
QEKALSAIADLLTNEHER	GlyGly (K)	2151.092	0.09200949	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	1	1									40.925	40.925	4	0.030847	10517	20190821_JH_EV_Ubi	43.37	9.4766	990100	990100	0	0	0	0	0	0	0	0			4125	257	3616	11615	12192	12192				1
QEKMATVWDEAEQDGIGEEVLK	Oxidation (M);GlyGly (K)	2634.2119	0.21192621	606	sp|P17980|PRS6A_HUMAN	yes	yes	0	0	1	1	1	1									40.083	40.083	3	0.0023963	10222	20190821_JH_EV_Ubi	68.458	13.493	1410000	1410000	0	0	0	0	0	0	0	0			4126	606	3617	11616	12193	12193		592	371	1
QEPQPQGPPPAAGAVASYDYLVIGGGSGGLASAR	Unmodified	3237.6055	0.60545451	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	0	0			1							48.338	48.338	3	0.0011198	13385	20190821_JH_WT_Ubi	49.838	28.988	2244800	0	0	2244800	0	0	0	0	0	0			4127	376	3618	11617	12194	12194				1
QESGVKIITQQVQPSK	GlyGly (K);2 Deamidation (NQ)	1884.9793	0.97927114	1535	sp|Q7Z589-2|EMSY_HUMAN;sp|Q7Z589-6|EMSY_HUMAN;sp|Q7Z589|EMSY_HUMAN;sp|Q7Z589-5|EMSY_HUMAN;sp|Q7Z589-4|EMSY_HUMAN;sp|Q7Z589-7|EMSY_HUMAN	yes	no	0	2	1	0	1	1									38.392	38.392	2	0.030645	9534	20190821_JH_EV_Ubi	52.495	6.8975	0	0	0	0	0	0	0	0	0	0			4128	1535	3619	11618	12195	12195	1103;1104;1105			1
QETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIGK	GlyGly (K)	4171.2012	0.20123217	299	sp|O75674-2|TM1L1_HUMAN;sp|O75674-3|TM1L1_HUMAN;sp|O75674|TM1L1_HUMAN	yes	no	0	0	1	0	1	1	1								46.574	46.574	3	7.9699E-06	12044	20190821_JH_MUT_Ubi	66.847	48.227	6965600	3917200	3048300	0	0	0	0	0	0	0			4129	299	3620	11619;11620	12196;12197	12197		286		2
QETEVELYNEFPEPIKLDK	GlyGly (K)	2434.1904	0.19038613	916	sp|P51149|RAB7A_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1				43.113	43.113	3	2.2632E-13	10825	20190821_JH_MUT_Ubi	141.1	94.942	9636400	2246700	2313800	3789600	0	0	1286300	0	0	0			4130	916	3621	11621;11622;11623;11624	12198;12199;12200;12201	12199		880;881		4
QETHTMEAVKLVEFDLK	Oxidation (M);GlyGly (K)	2147.0569	0.056869537	339	sp|O95363|SYFM_HUMAN	yes	yes	0	0	1	1	1								1		42.256	42.256	3	0.030854	12697	20190902_JH_WT_Ubi_2	51.771	13.158	10120000	0	0	0	0	0	0	0	10120000	0			4131	339	3622	11625	12202	12202			157	1
QEYDESGPSIVHR	Unmodified	1515.6954	0.69538514	1000;1087;1490	sp|P60709|ACTB_HUMAN;sp|Q9BYX7|ACTBM_HUMAN;sp|P0CG39|POTEJ_HUMAN;sp|P0CG38|POTEI_HUMAN;sp|P63261|ACTG_HUMAN;sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN	no	no	0	0	0	0	0		1	1	1	1	1	1	1	1	25.618	25.618	3	1.3528E-05	5525	20190902_JH_EV_Ubi_2	134.18	84.717	203910000	0	1306900	53996000	5011400	3257400	9754600	2476100	60462000	67646000			4132	1000;1087;1490	3623	11626;11627;11628;11629;11630;11631;11632;11633	12203;12204;12205;12206;12207;12208;12209;12210	12203				8
QEYVLTQQGFIYQGSAK	Unmodified	1958.9738	0.97379183	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0			1							39.997	39.997	2	1.3022E-05	9930	20190821_JH_WT_Ubi	118.52	74.748	11817000	0	0	11817000	0	0	0	0	0	0			4133	645	3624	11634	12211	12211				1
QFCFNCGENWHDPVKCK	GlyGly (K)	2338.967	0.96702545	2235	sp|Q9Y4X5|ARI1_HUMAN	yes	yes	0	0	1	0	1		1				1				31.753	31.753	4	0.016088	6568	20190821_JH_MUT_Ubi	54.95	29.765	9279400	0	5581200	0	0	0	3698100	0	0	0			4134	2235	3625	11635;11636	12212;12213	12212		2076		2
QFGFIVLTTSAGIMDHEEAR	Oxidation (M)	2237.0787	0.078667612	1041	sp|P62244|RS15A_HUMAN	yes	yes	0	0	0	1	0	1	1	1						1	43.89	43.89	3	7.4068E-05	11579	20190821_JH_WT_Ubi	94.61	66.137	16077000	1676200	2236100	10514000	0	0	0	0	0	1651100			4135	1041	3626	11637;11638;11639;11640	12214;12215;12216;12217	12216			641	4
QFLQAAEAIDDIPFGITSNSDVFSK	Unmodified	2712.3283	0.3282766	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0	1		1							54.385	54.385	3	0.0022682	15605	20190821_JH_WT_Ubi	59.646	28.783	6803600	930160	0	5873500	0	0	0	0	0	0			4136	444	3627	11641;11642	12218;12219	12219				2
QGEVSKAASADSTTEGTPADGFTVLSTK	GlyGly (K)	2868.3625	0.36248985	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	1	0	1			1					1	1	35.127	35.127	3	7.5272E-05	8046	20190821_JH_WT_Ubi	75.297	43.53	9221900	0	0	3886400	0	0	0	0	2832000	2503500			4137	281	3628	11643;11644;11645	12220;12221;12222	12220		269		3
QGGASQSDKTPEELFHPLGADSQV	GlyGly (K)	2611.215	0.21503775	520	sp|P11166|GTR1_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			38.452	38.452	3	7.3169E-08	9065	20190821_JH_MUT_Ubi	103.92	55.095	106190000	39687000	18105000	0	10744000	11472000	13624000	12552000	0	0			4138	520	3629	11646;11647;11648;11649;11650;11651	12223;12224;12225;12226;12227;12228	12226		522		6
QGGLLVNFHPSILTCLLPQLTSPR	Unmodified	2660.4472	0.44722671	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN;sp|Q86VP6-3|CAND1_HUMAN	yes	no	0	0	0	0	0		1	1							53.984	53.984	3	3.3516E-07	15415	20190821_JH_WT_Ubi	98.002	77.111	42405000	0	10088000	32317000	0	0	0	0	0	0			4139	1557	3630	11652;11653	12229;12230	12230				2
QGMSLDIVLKK	Oxidation (M);GlyGly (K)	1360.7384	0.73843593	2013	sp|Q9NRD5-2|PICK1_HUMAN;sp|Q9NRD5|PICK1_HUMAN	yes	no	0	0	1	1	1	1	1								29.24	29.24	3	0.024114	5591	20190821_JH_MUT_Ubi	65.5	6.824	5309400	2714200	2595100	0	0	0	0	0	0	0			4140	2013	3631	11654;11655	12231;12232	12232		1923	1084	2
QGRKLDIDFGAEGNR	GlyGly (K);2 Deamidation (NQ)	1790.8547	0.85473933	2156	sp|Q9UKY0|PRND_HUMAN	yes	yes	0	2	1	0	2					1					32.299	32.299	2	0.033118	7765	20190902_JH_EV_Ubi_3	43.604	12.807	997020	0	0	0	0	997020	0	0	0	0			4141	2156	3632	11656	12233	12233	689;1306			0
QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK	Unmodified	3556.5325	0.53248508	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	0	0	0				1						39.876	39.876	3	0.03099	9995	20190902_JH_EV_Ubi_2	40.336	26.784	0	0	0	0	0	0	0	0	0	0			4142	1227	3633	11657	12234	12234				1
QHMLIHSGIKPFQCDR	GlyGly (K)	2080.0095	0.0094826094	1639	sp|Q8NCP5-3|ZBT44_HUMAN;sp|Q8NCP5-4|ZBT44_HUMAN;sp|Q8NCP5-2|ZBT44_HUMAN;sp|Q8NCP5|ZBT44_HUMAN	yes	no	0	0	1	0	1		1								35.758	35.758	3	0.028263	8019	20190821_JH_MUT_Ubi	52.008	7.4409	884780	0	884780	0	0	0	0	0	0	0			4143	1639	3634	11658	12235	12235		1640		1
QIDEANFVMRCNLPPLSSEYTK	GlyGly (K)	2725.284	0.28398571	1707	sp|Q92185|SIA8A_HUMAN	yes	yes	0	0	1	0	1									1	35.619	35.619	3	0.027234	10014	20190902_JH_WT_Ubi_3	45.047	6.7761	3726900	0	0	0	0	0	0	0	0	3726900			4144	1707	3635	11659	12236	12236		1700		1
QIFVKTLTGK	GlyGly (K)	1247.7238	0.72377215	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1			1	1				1		29.42	29.42	2;3	0.0082648	8183	20190902_JH_WT_Ubi_2	94.409	55.156	174390000	0	0	56926000	33503000	0	0	0	83965000	0			4145	1074	3636	11660;11661;11662	12237;12238;12239	12239		1054;1055		2
QIKDLGSELVR	GlyGly (K)	1370.7518	0.75177781	470	sp|P08581|MET_HUMAN;sp|P08581-2|MET_HUMAN	yes	no	0	0	1	0	1								1		31.009	31.009	3	0.011252	8714	20190902_JH_WT_Ubi_2	85.963	17.427	7018900	0	0	0	0	0	0	0	7018900	0			4146	470	3637	11663	12240	12240		476		1
QILLGPNTGLSGGMPGALPSLPGK	Oxidation (M)	2290.2355	0.2355026	2023	sp|Q9NS69|TOM22_HUMAN	yes	yes	0	0	0	1	0	1			1	1					46.097	46.097	3	0.00020013	11603	20190902_JH_EV_Ubi_3	77.1	43.264	2973500	1511800	0	0	651130	810580	0	0	0	0			4147	2023	3638	11664;11665;11666	12241;12242;12243	12243			1089	3
QIPTHDYQKGDQYDVCAICLDEYEDGDK	GlyGly (K)	3488.4773	0.47727839	1962	sp|Q9H6Y7|RN167_HUMAN	yes	yes	0	0	1	0	1	1						1			36.649	36.649	4	9.6553E-05	9203	20190902_JH_MUT_Ubi_3	73.839	55.523	2257100	1640000	0	0	0	0	0	617150	0	0			4148	1962	3639	11667;11668	12244;12245;12246	12246		1891		3
QIQESEHMKVENSENGSKLTILAAR	Oxidation (M);2 Deamidation (NQ)	2829.3815	0.38145115	1363	sp|Q15746-9|MYLK_HUMAN;sp|Q15746-11|MYLK_HUMAN;sp|Q15746-7|MYLK_HUMAN;sp|Q15746-4|MYLK_HUMAN;sp|Q15746-5|MYLK_HUMAN;sp|Q15746-2|MYLK_HUMAN;sp|Q15746-3|MYLK_HUMAN;sp|Q15746-6|MYLK_HUMAN;sp|Q15746|MYLK_HUMAN	yes	no	0	2	0	1	2		1		1	1	1	1		1	24.77	24.77	4	0.0048526	5299	20190902_JH_EV_Ubi_3	53.964	6.361	52924000	0	4797500	0	15606000	14891000	7317600	3761300	0	6551100			4149	1363	3640	11669;11670;11671;11672;11673;11674	12247;12248;12249;12250;12251;12252	12248	433;1050;1051		850	6
QIQTPPDAGKLNSENQPKK	2 GlyGly (K);3 Deamidation (NQ)	2323.1292	0.12918286	1454	sp|Q5VWG9|TAF3_HUMAN	yes	yes	0	3	2	0	2			1							36.536	36.536	3	0.036804	8589	20190821_JH_WT_Ubi	41.86	7.8882	1796600	0	0	1796600	0	0	0	0	0	0			4150	1454	3641	11675	12253	12253	460;461			0
QKAAQQAASSSGQGQQAQTPTGK	GlyGly (K)	2371.1476	0.14762689	876	sp|P48729|KC1A_HUMAN;sp|P48729-2|KC1A_HUMAN	yes	no	0	0	1	0	1	1									17.566	17.566	3	0.0091774	2943	20190821_JH_EV_Ubi	53.718	22.36	305690	305690	0	0	0	0	0	0	0	0			4151	876	3642	11676	12254	12254		854		1
QKEEESQQQAVLEQER	GlyGly (K)	2071.977	0.97703931	2172	sp|Q9UM54-5|MYO6_HUMAN;sp|Q9UM54-2|MYO6_HUMAN;sp|Q9UM54-6|MYO6_HUMAN;sp|Q9UM54-4|MYO6_HUMAN;sp|Q9UM54-1|MYO6_HUMAN;sp|Q9UM54|MYO6_HUMAN	yes	no	0	0	1	0	1	1	1			1			1		22.947	22.947	3	7.6658E-10	3656	20190821_JH_MUT_Ubi	139.6	84.84	3029700	1457500	1055700	0	0	516460	0	0	0	0			4152	2172	3643	11677;11678;11679;11680	12255;12256;12257;12258	12257		2025		2
QKEKMHEQEEK	2 Deamidation (NQ)	1444.6504	0.65040879	99	sp|A8MZA4|GG6L6_HUMAN;sp|H0YM25|GG6LV_HUMAN	yes	no	0	2	0	0	2					1					38.114	38.114	2	0.0088839	9473	20190902_JH_EV_Ubi_3	84.213	18.907	6957500	0	0	0	0	6957500	0	0	0	0			4153	99	3644	11681	12259	12259	750;751			0
QKENADPRPPVQFPNLPR	GlyGly (K)	2216.145	0.14504811	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN	yes	no	0	0	1	0	2	1									33.345	33.345	4	0.032666	7721	20190821_JH_EV_Ubi	42.257	13.121	2195900	2195900	0	0	0	0	0	0	0	0			4154	1446	3645	11682	12260	12260				1
QKENKQVEEILR	2 GlyGly (K);2 Deamidation (NQ)	1742.8799	0.87989145	1995	sp|Q9HD67-3|MYO10_HUMAN;sp|Q9HD67|MYO10_HUMAN	yes	no	0	2	2	0	2									1	43.424	43.424	2	0.03565	12663	20190902_JH_WT_Ubi_3	51.528	13.806	0	0	0	0	0	0	0	0	0	0			4155	1995	3646	11683	12261	12261	640;1264			1
QKEVEQLIK	GlyGly (K)	1227.6823	0.68230126	684	sp|P25789|PSA4_HUMAN;sp|P25789-2|PSA4_HUMAN	yes	no	0	0	1	0	1		1								25.105	25.105	3	0.030575	4229	20190821_JH_MUT_Ubi	68.371	13.307	632650	0	632650	0	0	0	0	0	0	0			4156	684	3647	11684	12262	12262				1
QKHEIESLYTK	Unmodified	1374.7143	0.71432967	1951	sp|Q9H4A3-4|WNK1_HUMAN;sp|Q9H4A3-2|WNK1_HUMAN;sp|Q9H4A3|WNK1_HUMAN;sp|Q9H4A3-5|WNK1_HUMAN;sp|Q9H4A3-6|WNK1_HUMAN;sp|Q9H4A3-7|WNK1_HUMAN	yes	no	0	0	0	0	1	1									27.773	27.773	3	0.010773	5520	20190821_JH_EV_Ubi	75.566	42.815	8723600	8723600	0	0	0	0	0	0	0	0			4157	1951	3648	11685	12263	12263				0
QLAMTEENKKESQPALELR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2346.1373	0.1373047	235	sp|O60281-2|ZN292_HUMAN;sp|O60281|ZN292_HUMAN	yes	no	0	2	1	1	2							1			51.322	51.322	3	0.033941	13349	20190902_JH_MUT_Ubi_3	43.955	6.3305	0	0	0	0	0	0	0	0	0	0			4158	235	3649	11686	12264	12264	75;781			1
QLASGLLLVTGPLVLNR	Unmodified	1763.0669	0.066904359	1143	sp|Q02878|RL6_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1		1	53.187	53.187	3	3.7411E-42	15120	20190821_JH_WT_Ubi	200	164.7	10853000	2190800	1655200	4526100	0	0	611320	738310	0	1130800			4159	1143	3650	11687;11688;11689;11690;11691;11692	12265;12266;12267;12268;12269;12270	12269				6
QLDSTIGIHPVCAEVFTTLSVTK	Unmodified	2515.2992	0.29922507	1394	sp|Q16881-7|TRXR1_HUMAN;sp|Q16881-5|TRXR1_HUMAN;sp|Q16881-2|TRXR1_HUMAN;sp|Q16881-4|TRXR1_HUMAN;sp|Q16881-3|TRXR1_HUMAN;sp|Q16881-6|TRXR1_HUMAN;sp|Q16881|TRXR1_HUMAN	yes	no	0	0	0	0	0			1							46.125	46.125	3	0.012907	12478	20190821_JH_WT_Ubi	47.931	16.82	4189300	0	0	4189300	0	0	0	0	0	0			4160	1394	3651	11693	12271	12271				1
QLEAIDQLHLEYAK	Unmodified	1669.8675	0.86753585	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	0	0			1							38.141	38.141	3	0.028891	9196	20190821_JH_WT_Ubi	50.222	23.253	5507700	0	0	5507700	0	0	0	0	0	0			4161	214	3652	11694	12272	12272				1
QLEKNVEDFLALTGIESADK	GlyGly (K)	2333.1751	0.17507042	1340	sp|Q15361|TTF1_HUMAN	yes	yes	0	0	1	0	1					1					36.253	36.253	3	0.011329	8953	20190902_JH_EV_Ubi_3	57.173	7.2496	2829000	0	0	0	0	2829000	0	0	0	0			4162	1340	3653	11695	12273	12273		1394		1
QLFHPEQLITGK	Unmodified	1409.7667	0.76669959	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1		1	1	1	35.876	35.876	3	0.0082392	8190	20190821_JH_MUT_Ubi	80.17	0	138710000	10584000	6255300	47734000	3719400	3365200	0	4465900	34210000	28376000			4163	1097;1098;1515;1858	3654	11696;11697;11698;11699;11700;11701;11702;11703	12274;12275;12276;12277;12278;12279;12280;12281	12277				8
QLIYNYPEQLFGAAGVMAIEHADFAGVER	Oxidation (M)	3224.5601	0.56008422	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	1	0								1		53.14	53.14	3	0.012994	15803	20190902_JH_WT_Ubi_2	42.166	11.417	1210700	0	0	0	0	0	0	0	1210700	0			4164	1105	3655	11704	12282	12282			688	1
QLLAGGIAGAVSR	Unmodified	1211.6986	0.69862003	1475	sp|Q6NUK1|SCMC1_HUMAN;sp|Q6NUK1-2|SCMC1_HUMAN	yes	no	0	0	0	0	0									1	35.893	35.893	2	0.013515	10131	20190902_JH_WT_Ubi_3	72.531	33.755	2909300	0	0	0	0	0	0	0	0	2909300			4165	1475	3656	11705	12283	12283				0
QLLDDEEQLTAKTLYMSHR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2422.1322	0.13221932	1869	sp|Q9BSJ8|ESYT1_HUMAN;sp|Q9BSJ8-2|ESYT1_HUMAN	yes	no	0	2	1	1	1									1	54.465	54.465	3	0.036886	15666	20190902_JH_WT_Ubi_3	42.277	17.977	0	0	0	0	0	0	0	0	0	0			4166	1869	3657	11706	12284	12284				1
QLLHNFPPDQLTSSGAPFWSGPKR	GlyGly (K)	2793.3987	0.39869662	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	1		1								41.131	41.131	4	0.0036379	9728	20190821_JH_MUT_Ubi	56.488	29.081	2133900	0	2133900	0	0	0	0	0	0	0			4167	651	3658	11707	12285;12286	12285		626		2
QLLQANPILEAFGNAK	Unmodified	1725.9414	0.94136949	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN;sp|P35749-4|MYH11_HUMAN;sp|P35749-3|MYH11_HUMAN;sp|P35749|MYH11_HUMAN;sp|P35749-2|MYH11_HUMAN;sp|Q7Z406-5|MYH14_HUMAN;sp|Q7Z406-4|MYH14_HUMAN;sp|Q7Z406|MYH14_HUMAN;sp|Q7Z406-6|MYH14_HUMAN;sp|Q7Z406-2|MYH14_HUMAN	yes	no	0	0	0	0	0	1									49.602	49.602	2	0.014109	13464	20190821_JH_EV_Ubi	64.121	38.004	933360	933360	0	0	0	0	0	0	0	0			4168	776	3659	11708	12287	12287				1
QLLSNELLLTQMEK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1789.9132	0.91316541	1977	sp|Q9HAV4|XPO5_HUMAN	yes	yes	0	1	1	1	0									1	48.285	48.285	3	0.02304	14166	20190902_JH_WT_Ubi_3	55.291	13.67	1095900	0	0	0	0	0	0	0	0	1095900			4169	1977	3660	11709	12288	12288	1256	1905	1075	1
QLLTLSSELSQAR	Unmodified	1444.7886	0.78855725	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	0	0	0									1	39.289	39.289	2	6.5362E-06	11257	20190902_JH_WT_Ubi_3	138.63	65.393	1749400	0	0	0	0	0	0	0	0	1749400			4170	568	3661	11710	12289	12289				1
QLNLHKDTEPK	GlyGly (K);2 Deamidation (NQ)	1437.71	0.70997257	1998	sp|Q9NP59|S40A1_HUMAN	yes	yes	0	2	1	0	1									1	26.048	26.048	3	0.031653	6797	20190902_JH_WT_Ubi_3	64.374	17.146	0	0	0	0	0	0	0	0	0	0			4171	1998	3662	11711	12290	12290	642;1266			1
QLQEATSQLLLLER	Unmodified	1640.9097	0.90973501	24		yes	yes	0	0	0	0	0							1			39.294	39.294	3	0.012316	10115	20190902_JH_MUT_Ubi_3	66.023	13.559	3470500	0	0	0	0	0	0	3470500	0	0	+		4172	24	3663	11712	12291	12291				1
QLSKYESQLSTNEEK	GlyGly (K)	1896.9065	0.90650013	1237	sp|Q13433-2|S39A6_HUMAN;sp|Q13433|S39A6_HUMAN	yes	no	0	0	1	0	1	1									25.254	25.254	3	0.00098576	4749	20190821_JH_EV_Ubi	98.654	62.762	2503700	2503700	0	0	0	0	0	0	0	0			4173	1237	3664	11713	12292	12292		1301;1302		1
QLTANTGHTIHVHYPGNR	Unmodified	2015.0086	0.008554632	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	0	0	0	1									23.499	23.499	4	0.031271	4247	20190821_JH_EV_Ubi	37.182	16.427	3355700	3355700	0	0	0	0	0	0	0	0			4174	1539	3665	11714	12293	12293				1
QLVFHIGHGDLGSPAVLVSR	Unmodified	2101.1433	0.1432572	347	sp|O95479|G6PE_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1			1	1	39.512	39.512	4	0.0015036	10092	20190821_JH_EV_Ubi	70.334	34.862	86459000	29368000	6385300	28202000	6693600	5830900	0	0	4903100	5076100			4175	347	3666	11715;11716;11717;11718;11719;11720;11721	12294;12295;12296;12297;12298;12299;12300	12294				7
QMEIAKQNWLAEQQK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1974.9469	0.94692516	1807	sp|Q96PP8|GBP5_HUMAN	yes	yes	0	1	1	1	1			1							39.094	39.094	3	0.028259	9522	20190821_JH_WT_Ubi	58.32	18.972	3551200	0	0	3551200	0	0	0	0	0	0			4176	1807	3667	11722	12301	12301	1192	1767	1007	0
QMEKIQPALQEK	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	1686.8247	0.82468476	1834	sp|Q99471-3|PFD5_HUMAN;sp|Q99471|PFD5_HUMAN	yes	no	0	1	2	1	1					1					25.811	25.811	3	0.029753	5667	20190902_JH_EV_Ubi_3	49.28	10.881	1637700	0	0	0	0	1637700	0	0	0	0			4177	1834	3668	11723	12302	12302	1208;1209	1795;1796	1012	0
QMENGMLVTDSAGKQLQR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2151.9889	0.98886633	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	2	1	1	1					1			27.876	27.876	3	0.0016983	5675	20190821_JH_EV_Ubi	74.772	39.469	6681200	3271200	1589400	0	0	0	0	1820600	0	0			4178	760	3669	11724;11725;11726	12303;12304;12305	12303	269;893	735	476;477	3
QMIEIIGLVAEEDLQSLSVK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2345.2036	0.20359335	1507	sp|Q6ZTR5-2|CFA47_HUMAN;sp|Q6ZTR5-1|CFA47_HUMAN;sp|Q6ZTR5-6|CFA47_HUMAN;sp|Q6ZTR5|CFA47_HUMAN	yes	no	0	1	1	1	0	1									38.386	38.386	3	0.011742	9532	20190821_JH_EV_Ubi	62.203	14.474	0	0	0	0	0	0	0	0	0	0			4179	1507	3670	11727	12306	12306	1098	1506	907	1
QMKAYLKHLK	3 GlyGly (K)	1600.8508	0.85078035	1331	sp|Q15147-2|PLCB4_HUMAN;sp|Q15147|PLCB4_HUMAN;sp|Q15147-5|PLCB4_HUMAN;sp|Q15147-4|PLCB4_HUMAN	yes	no	0	0	3	0	2						1				33.155	33.155	3	0.037137	8533	20190902_JH_MUT_Ubi_2	45.368	12.176	0	0	0	0	0	0	0	0	0	0			4180	1331	3671	11728	12307	12307				1
QMKLLQQQNDITGLSRQVK	GlyGly (K);4 Deamidation (NQ)	2345.1897	0.18967462	2186	sp|Q9UPN9-2|TRI33_HUMAN;sp|Q9UPN9|TRI33_HUMAN	yes	no	0	4	1	0	2		1								38.514	38.514	3	0.0011354	8943	20190821_JH_MUT_Ubi	80.545	13.293	9671300	0	9671300	0	0	0	0	0	0	0			4181	2186	3672	11729	12308	12308	1317;1318;1319;1320	2046		1
QMLVNAFTEQILPHFSTEGPQR	Oxidation (M)	2558.2588	0.25875724	1417	sp|Q53FA7|QORX_HUMAN	yes	yes	0	0	0	1	0	1									46.595	46.595	3	0.019547	12581	20190821_JH_EV_Ubi	47.155	14.59	2617900	2617900	0	0	0	0	0	0	0	0			4182	1417	3673	11730	12309;12310	12309			867	2
QMLVNAFTEQILPHFSTEGPQR	Unmodified	2542.2638	0.26384262	1417	sp|Q53FA7|QORX_HUMAN	yes	yes	0	0	0	0	0	1									48.841	48.841	3	4.9236E-07	13297	20190821_JH_EV_Ubi	104.45	58.318	904950	904950	0	0	0	0	0	0	0	0			4183	1417	3673	11731	12311	12311				1
QMMLIQKAKSR	Oxidation (M);GlyGly (K);Deamidation (NQ)	1463.7589	0.7588538	1578	sp|Q8IWJ2|GCC2_HUMAN	yes	yes	0	1	1	1	2								1		50.132	50.132	2	0.0027858	14992	20190902_JH_WT_Ubi_2	104.17	35.274	1812200	0	0	0	0	0	0	0	1812200	0			4184	1578	3674	11732	12312	12312	1124	1577	933	0
QMSGAQIKIANPVEGSSGR	Oxidation (M);GlyGly (K)	2059.0117	0.011650679	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	1	1	1		1				1	1			28.253	28.253	3	3.2658E-09	5365	20190821_JH_MUT_Ubi	131.84	83.431	14044000	0	5182800	0	0	0	5034200	3827400	0	0			4185	1341	3675	11733;11734;11735	12313;12314;12315	12313		1395	842	3
QMSGAQIKIANPVEGSTDR	Oxidation (M);GlyGly (K)	2131.0328	0.032780052	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	0	1	1	1		1								29.624	29.624	3	0.02805	5711	20190821_JH_MUT_Ubi	49.973	15.781	884400	0	884400	0	0	0	0	0	0	0			4186	1342	3676	11736	12316	12316		1396	846	1
QMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMK	Unmodified	4269.0333	0.033320683	949	sp|P53618|COPB_HUMAN	yes	yes	0	0	0	0	2	1									27.462	27.462	6	0.02952	5473	20190821_JH_EV_Ubi	20.174	6.3295	447090	447090	0	0	0	0	0	0	0	0			4187	949	3677	11737	12317	12317				1
QNGIQTNK	GlyGly (K)	1015.5047	0.50467125	1223	sp|Q13190-3|STX5_HUMAN;sp|Q13190-2|STX5_HUMAN;sp|Q13190-4|STX5_HUMAN;sp|Q13190|STX5_HUMAN	yes	no	0	0	1	0	0				1						16.287	16.287	2	0.018793	3528	20190902_JH_EV_Ubi_2	76.035	7.652	1668400	0	0	0	1668400	0	0	0	0	0			4188	1223	3678	11738	12318	12318		1288		1
QNLEPLFEQYINNLR	Unmodified	1889.9636	0.9635615	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN	no	no	0	0	0	0	0			1							51.97	51.97	3	0.0020817	14678	20190821_JH_WT_Ubi	84.759	47.146	1705400	0	0	1705400	0	0	0	0	0	0		+	4189	3	3679	11739	12319	12319				1
QNMLPTPTK	Oxidation (M);2 Deamidation (NQ)	1046.4954	0.49541169	1191	sp|Q0VDD8-4|DYH14_HUMAN	yes	yes	0	2	0	1	0					1					18.435	18.435	2	0.029969	3824	20190902_JH_EV_Ubi_3	57.047	22.342	776910	0	0	0	0	776910	0	0	0	0			4190	1191	3680	11740	12320	12320	392;1009		755	0
QNPGLAYGNPYSGIQESSSPSPLSIKK	GlyGly (K)	2932.4567	0.45666501	1216	sp|Q13137-5|CACO2_HUMAN;sp|Q13137-2|CACO2_HUMAN;sp|Q13137|CACO2_HUMAN;sp|Q13137-3|CACO2_HUMAN;sp|Q13137-4|CACO2_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			37.861	37.861	3	2.2261E-44	8837	20190821_JH_MUT_Ubi	180.68	138.88	8292800	1866000	2360000	0	0	0	1805100	2261600	0	0			4191	1216	3681	11741;11742;11743;11744	12321;12322;12323;12324;12325	12322		1282;1283		5
QNQGKFVQNGR	3 Deamidation (NQ)	1277.6	0.60002819	1349	sp|Q15434|RBMS2_HUMAN	yes	yes	0	3	0	0	1						1				31.617	31.617	2	0.003518	7890	20190902_JH_MUT_Ubi_2	95.741	48.167	11929000	0	0	0	0	0	11929000	0	0	0			4192	1349	3682	11745	12326	12326	429;1046;1047			0
QPMNAASGAAMSLAGAEKNGLVK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2362.1257	0.12569416	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	1	2	1	1	1	1	1	1	1				31.117	31.117	3	6.1137E-06	6683	20190821_JH_WT_Ubi	94.911	64.804	28140000	6820300	2985800	3032600	5031500	6499000	3771000	0	0	0			4193	462;463	3683	11746;11747;11748;11749;11750;11751	12327;12328;12329;12330;12331;12332	12332	171;172;837	467;468	263;264	6
QPMNAASGAAMSLAGAEKNGLVK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2346.1308	0.13077954	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	1	1	1	1	1	1				1				33.922	33.922	3	1.1274E-07	7892	20190821_JH_EV_Ubi	110.98	68.27	7406200	3820800	983620	0	0	0	2601800	0	0	0			4194	462;463	3683	11752;11753;11754	12333;12334;12335	12333	171;172;837	467;468	263;264	3
QPSWDPSPVSSTVPAPSPLSAAAVSPSK	Unmodified	2746.3814	0.3813748	2005	sp|Q9NQC3-2|RTN4_HUMAN;sp|Q9NQC3-5|RTN4_HUMAN;sp|Q9NQC3|RTN4_HUMAN	yes	no	0	0	0	0	0								1		45.556	45.556	3	0.021559	13695	20190902_JH_WT_Ubi_2	53.089	20.381	988980	0	0	0	0	0	0	0	988980	0			4195	2005	3684	11755	12336	12336				0
QQCIERDEVRNVFR	Deamidation (NQ)	1848.8901	0.89007898	1553	sp|Q86UX6-2|ST32C_HUMAN;sp|Q86UX6|ST32C_HUMAN	yes	no	0	1	0	0	2						1				31.954	31.954	2	0.035111	8025	20190902_JH_MUT_Ubi_2	66.19	6.9253	2999600	0	0	0	0	0	2999600	0	0	0			4196	1553	3685	11756	12337	12337	500			1
QQGDHVARILELEDDIQTISEKVLTK	2 GlyGly (K);3 Deamidation (NQ)	3208.6099	0.60993076	2086	sp|Q9P1Z2-4|CACO1_HUMAN;sp|Q9P1Z2-2|CACO1_HUMAN;sp|Q9P1Z2-3|CACO1_HUMAN;sp|Q9P1Z2|CACO1_HUMAN	yes	no	0	3	2	0	2		1								50.103	50.103	3	0.031229	13218	20190821_JH_MUT_Ubi	41.482	17.206	0	0	0	0	0	0	0	0	0	0			4197	2086	3686	11757	12338	12338	1286;1287;1288			1
QQGKVQKLEFPQEANSK	2 GlyGly (K);2 Deamidation (NQ)	2188.076	0.076025075	1269	sp|Q14088|RB33A_HUMAN	yes	yes	0	2	2	0	2									1	29.392	29.392	3	0.02867	7882	20190902_JH_WT_Ubi_3	56.147	9.7908	2985500	0	0	0	0	0	0	0	0	2985500			4198	1269	3687	11758	12339	12339	1022;1023;1024	1332;1333		1
QQIEYKTLILNCVNPDNENSPEIPVK	GlyGly (K)	3168.5761	0.57612822	267	sp|O75051|PLXA2_HUMAN	yes	yes	0	0	1	0	1	1									43.141	43.141	3	0.015967	11393	20190821_JH_EV_Ubi	45.579	20.683	1240500	1240500	0	0	0	0	0	0	0	0			4199	267	3688	11759	12340	12340		259		1
QQKDSLINLKIQK	3 GlyGly (K);Deamidation (NQ)	1898.0221	0.022139011	1620	sp|Q8N5K1|CISD2_HUMAN	yes	yes	0	1	3	0	2	1									34.415	34.415	3	0.010341	8127	20190821_JH_EV_Ubi	77.124	27.641	1282400	1282400	0	0	0	0	0	0	0	0			4200	1620	3689	11760	12341	12341	1139;1140	1622;1623;1624		0
QQLKDQYFLQR	3 Deamidation (NQ)	1468.7198	0.71980898	315	sp|O94804|STK10_HUMAN	yes	yes	0	3	0	0	1									1	49.834	49.834	2	0.034778	14571	20190902_JH_WT_Ubi_3	48.794	9.7723	2134000	0	0	0	0	0	0	0	0	2134000			4201	315	3690	11761	12342	12342	797;798;799			0
QQPRAKQVCNVEVGLQTQER	4 Deamidation (NQ)	2371.1438	0.14378706	927	sp|P51826|AFF3_HUMAN;sp|P51826-2|AFF3_HUMAN	yes	no	0	4	0	0	2			1							29.574	29.574	3	0.03474	6198	20190821_JH_WT_Ubi	41.202	15.694	1900000	0	0	1900000	0	0	0	0	0	0			4202	927	3691	11762	12343	12343	316;939;940;941;942			1
QQPTQFINPETPGYVGFANLPNQVHR	Unmodified	2951.4678	0.46783882	1316	sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN	yes	no	0	0	0	0	0			1							43.548	43.548	3	0.0034207	11438	20190821_JH_WT_Ubi	53.278	24.875	5306600	0	0	5306600	0	0	0	0	0	0			4203	1316	3692	11763	12344	12344				1
QQQFNVQALVAVGDHASK	Unmodified	1938.9912	0.99117323	560	sp|P14868|SYDC_HUMAN	yes	yes	0	0	0	0	0	1		1							38.579	38.579	3	0.0078414	9329	20190821_JH_WT_Ubi	60.542	23.365	9022500	4071500	0	4951000	0	0	0	0	0	0			4204	560	3693	11764;11765	12345;12346	12346				2
QQVASLETNDPILGFQATNER	3 Deamidation (NQ)	2333.1023	0.1022994	1815	sp|Q96RS6-3|NUDC1_HUMAN;sp|Q96RS6-2|NUDC1_HUMAN;sp|Q96RS6|NUDC1_HUMAN	yes	no	0	3	0	0	0									1	34.554	34.554	3	0.021993	9654	20190902_JH_WT_Ubi_3	52.185	8.8024	7923900	0	0	0	0	0	0	0	0	7923900			4205	1815	3694	11766	12347	12347	583;1197;1198;1199			0
QRGFYSDILSPGTLDQLGEVCR	Deamidation (NQ)	2511.2064	0.20638732	2090	sp|Q9P2D7-3|DYH1_HUMAN;sp|Q9P2D7-5|DYH1_HUMAN;sp|Q9P2D7-2|DYH1_HUMAN;sp|Q9P2D7-4|DYH1_HUMAN;sp|Q9P2D7|DYH1_HUMAN	yes	no	0	1	0	0	1								1		41.992	41.992	3	0.032563	12516	20190902_JH_WT_Ubi_2	63.488	20.772	3564200	0	0	0	0	0	0	0	3564200	0			4206	2090	3695	11767	12348	12348	1289			1
QRNPMDYPVEDAFCKPQLVK	GlyGly (K);Deamidation (NQ)	2549.2043	0.20427883	1655	sp|Q8NFJ5|RAI3_HUMAN	yes	yes	0	1	1	0	2							1			37.643	37.643	3	0.0206	9570	20190902_JH_MUT_Ubi_3	59.154	31.659	0	0	0	0	0	0	0	0	0	0			4207	1655	3696	11768	12349	12349	1152	1654;1655		1
QRVIVMLYNK	Oxidation (M);Deamidation (NQ)	1279.6958	0.69584284	1474	sp|Q6KC79-2|NIPBL_HUMAN;sp|Q6KC79|NIPBL_HUMAN	yes	no	0	1	0	1	1			1							38.982	38.982	3	0.021155	9524	20190821_JH_WT_Ubi	75.378	29.22	1592800	0	0	1592800	0	0	0	0	0	0			4208	1474	3697	11769	12350	12350	1083		898	1
QSKEMDQLKK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1364.6606	0.66057954	1331	sp|Q15147-2|PLCB4_HUMAN;sp|Q15147|PLCB4_HUMAN;sp|Q15147-5|PLCB4_HUMAN;sp|Q15147-4|PLCB4_HUMAN	yes	no	0	1	1	1	2		1								33.957	33.957	2	0.035968	7385	20190821_JH_MUT_Ubi	43.083	10.865	1516800	0	1516800	0	0	0	0	0	0	0			4209	1331	3698	11770	12351	12351				0
QSPEHNLTHPELSVAVEMLSSVALINR	Deamidation (NQ)	2971.5073	0.50732037	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	1	0	0	0								1		49.416	49.416	3	0.015887	14827	20190902_JH_WT_Ubi_2	61.524	30.94	0	0	0	0	0	0	0	0	0	0			4210	863	3699	11771	12352	12352	929			1
QSVIETLVTENGNIESVPK	GlyGly (K);Deamidation (NQ)	2171.0958	0.095757464	1162	sp|Q05C16|LRC63_HUMAN	yes	yes	0	1	1	0	0					1					44.167	44.167	2	0.014114	11219	20190902_JH_EV_Ubi_3	63.76	23.036	0	0	0	0	0	0	0	0	0	0			4211	1162	3700	11772	12353	12353	999	1156		1
QTASVTLQAIAAQNAAVQAVNAHSNILK	Unmodified	2831.5254	0.52535369	1395	sp|Q16891-2|MIC60_HUMAN;sp|Q16891|MIC60_HUMAN;sp|Q16891-3|MIC60_HUMAN;sp|Q16891-4|MIC60_HUMAN	yes	no	0	0	0	0	0	1		1	1	1					44.353	44.353	3	4.9223E-05	11781	20190821_JH_WT_Ubi	76.241	42.791	11297000	5679900	0	4591800	452490	572440	0	0	0	0			4212	1395	3701	11773;11774;11775;11776	12354;12355;12356;12357	12357				4
QTIAHQQQQLTNLQMAAQR	3 Deamidation (NQ)	2210.075	0.074979217	2136	sp|Q9UHX1-4|PUF60_HUMAN;sp|Q9UHX1-6|PUF60_HUMAN;sp|Q9UHX1-2|PUF60_HUMAN	yes	no	0	3	0	0	0								1		40.465	40.465	3	0.036442	11987	20190902_JH_WT_Ubi_2	41.422	15.058	4462100	0	0	0	0	0	0	0	4462100	0			4213	2136	3702	11777	12358	12358	677			1
QTKFKGMK	3 GlyGly (K)	1308.6609	0.66085431	1813	sp|Q96RF0-3|SNX18_HUMAN;sp|Q96RF0-2|SNX18_HUMAN;sp|Q96RF0|SNX18_HUMAN	yes	no	0	0	3	0	2								1		33.648	33.648	2	0.025222	9626	20190902_JH_WT_Ubi_2	65.252	6.2714	3178900	0	0	0	0	0	0	0	3178900	0			4214	1813	3703	11778	12359	12359		1779;1780;1781		1
QTLEQKTQELYHLQLK	GlyGly (K);Deamidation (NQ)	2114.1008	0.10078326	1502	sp|Q6ZN16-2|M3K15_HUMAN;sp|Q6ZN16-3|M3K15_HUMAN;sp|Q6ZN16|M3K15_HUMAN	yes	no	0	1	1	0	1							1			42.652	42.652	3	0.028288	11287	20190902_JH_MUT_Ubi_3	62.69	14.299	1900700	0	0	0	0	0	0	1900700	0	0			4215	1502	3704	11779	12360	12360	1090	1505		0
QTLPGLSNGSQIK	GlyGly (K);3 Deamidation (NQ)	1458.7202	0.72020291	1989	sp|Q9HCH5-15|SYTL2_HUMAN;sp|Q9HCH5-14|SYTL2_HUMAN;sp|Q9HCH5-6|SYTL2_HUMAN;sp|Q9HCH5|SYTL2_HUMAN;sp|Q9HCH5-13|SYTL2_HUMAN	yes	no	0	3	1	0	0								1		30.899	30.899	2	0.027426	8746	20190902_JH_WT_Ubi_2	52.579	19.316	15781000	0	0	0	0	0	0	0	15781000	0			4216	1989	3705	11780	12361	12361	634;1261;1262	1912		0
QTNLENLDQAFSVAER	Unmodified	1833.8857	0.88570511	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1							42.817	42.817	2	2.2196E-05	11098	20190821_JH_WT_Ubi	118.52	48.801	4167800	0	0	4167800	0	0	0	0	0	0			4217	1332	3706	11781	12362	12362				1
QTQTFTTYSDNQPGVLIQVYEGER	Unmodified	2773.3195	0.31950282	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	0	0	1		1					1		45.901	45.901	3	2.0647E-57	12332	20190821_JH_WT_Ubi	201.85	162.26	21718000	3501800	0	14658000	0	0	0	0	3558600	0			4218	519	3707	11782;11783;11784	12363;12364;12365	12364				3
QTVADQVLVGSYCVFSNQGGLVHPK	Unmodified	2702.3486	0.34863488	988	sp|P56537|IF6_HUMAN;sp|P56537-2|IF6_HUMAN	yes	no	0	0	0	0	0			1						1	44.825	44.825	3	1.036E-06	12008	20190821_JH_WT_Ubi	91.166	66.614	4107400	0	0	3127700	0	0	0	0	0	979710			4219	988	3708	11785;11786	12366;12367	12366				2
QVASHVGLHSASIPGILALDLCPSDTNK	Unmodified	2899.4862	0.486191	2174	sp|Q9UMS4|PRP19_HUMAN	yes	yes	0	0	0	0	0		1								42.927	42.927	4	0.0073557	10650	20190821_JH_MUT_Ubi	45.017	19.804	3814100	0	3814100	0	0	0	0	0	0	0			4220	2174	3709	11787	12368	12368				1
QVCQLPGLFSYAQHIASIDGR	Unmodified	2359.1743	0.17429933	2257	sp|Q9Y6C9|MTCH2_HUMAN	yes	yes	0	0	0	0	0	1				1					47.819	47.819	3	0.0068854	13048	20190821_JH_EV_Ubi	57.171	25.079	3881900	2851500	0	0	0	1030400	0	0	0	0			4221	2257	3710	11788;11789	12369;12370	12369				2
QVDGDNSHVEMKLAVDEEENADNNTK	Oxidation (M);GlyGly (K)	3030.3109	0.31086498	393	sp|P02786|TFR1_HUMAN	yes	yes	0	0	1	1	1			1	1		1		1		27.343	27.343	3;4	0.00070328	6333	20190902_JH_MUT_Ubi_2	70.449	55.796	8055000	0	0	1129400	2115400	0	988300	0	3821800	0			4222	393	3711	11790;11791;11792;11793	12371;12372;12373;12374	12372		362;364	183	4
QVDGDNSHVEMKLAVDEEENADNNTK	GlyGly (K)	3014.316	0.31595036	393	sp|P02786|TFR1_HUMAN	yes	yes	0	0	1	0	1		1	1							30.418	30.418	4	0.0098873	6026	20190821_JH_MUT_Ubi	47.331	28.007	8715900	0	3736100	4979800	0	0	0	0	0	0			4223	393	3711	11794;11795	12375;12376	12375		362;364		2
QVDGDNSHVEMKLAVDEEENADNNTK	GlyGly (K);Deamidation (NQ)	3015.3	0.29996595	393	sp|P02786|TFR1_HUMAN	yes	yes	0	1	1	0	1			1							32.908	32.908	3	0.0027486	7260	20190821_JH_WT_Ubi	68.074	30.385	0	0	0	0	0	0	0	0	0	0			4224	393	3711	11796	12377	12377	127;128;129;131;813	362;364		1
QVDGDNSHVEMKLAVDEEENADNNTK	GlyGly (K);2 Deamidation (NQ)	3016.284	0.28398153	393	sp|P02786|TFR1_HUMAN	yes	yes	0	2	1	0	1								1		32.543	32.543	3	5.6447E-07	9194	20190902_JH_WT_Ubi_2	107.85	80.303	4019000	0	0	0	0	0	0	0	4019000	0			4225	393	3711	11797	12378	12378	127;128;129;131;813	362;364		0
QVDHFASNSQVIK	GlyGly (K);2 Deamidation (NQ)	1587.7529	0.75290002	1608	sp|Q8N302-3|AGGF1_HUMAN	yes	yes	0	2	1	0	0		1								36.332	36.332	2	0.03663	8231	20190821_JH_MUT_Ubi	49.3	8.2714	0	0	0	0	0	0	0	0	0	0			4226	1608	3712	11798	12379	12379	524			1
QVDVPTLTGAFGILAAHVPTLQVLR	Unmodified	2615.4799	0.47990705	725	sp|P30049|ATPD_HUMAN	yes	yes	0	0	0	0	0			1							54.928	54.928	3	0.011012	15785	20190821_JH_WT_Ubi	46.971	17.131	4489500	0	0	4489500	0	0	0	0	0	0			4227	725	3713	11799	12380	12380				1
QVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK	Unmodified	4106.2528	0.25281423	725	sp|P30049|ATPD_HUMAN	yes	yes	0	0	0	0	1		1	1							53.562	53.562	5	0.033548	15215	20190821_JH_WT_Ubi	12.755	4.5567	61066000	0	11335000	49731000	0	0	0	0	0	0			4228	725	3714	11800;11801	12381;12382	12382				2
QVEVDCQQCMLEILDTAGTEQFTAMR	Oxidation (M)	3088.361	0.36099176	1061	sp|P62834|RAP1A_HUMAN	yes	yes	0	0	0	1	0			1							35.206	35.206	3	0.014166	7982	20190821_JH_WT_Ubi	45.395	27.098	7259100	0	0	7259100	0	0	0	0	0	0			4229	1061	3715	11802	12383	12383			652	1
QVNQESLKLLNK	4 Deamidation (NQ)	1416.7348	0.73479034	1560	sp|Q86WN2|IFNE_HUMAN	yes	yes	0	4	0	0	1		1			1					19.946	19.946	3	0.01201	3115	20190821_JH_MUT_Ubi	78.488	9.8624	129770000	0	30587000	0	0	99186000	0	0	0	0			4230	1560	3716	11803;11804	12384;12385	12385	504;505;1114;1115			2
QVTITGSAASISLAQYLINAR	Unmodified	2176.1852	0.18518159	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	0	0	0									1	51.673	51.673	3	0.024598	15078	20190902_JH_WT_Ubi_3	43.116	2.8783	934690	0	0	0	0	0	0	0	0	934690			4231	1341	3717	11805	12386	12386				1
QVTITGSAASISLAQYLINVR	Unmodified	2204.2165	0.21648172	1342	sp|Q15366-7|PCBP2_HUMAN;sp|Q15366-8|PCBP2_HUMAN;sp|Q15366-4|PCBP2_HUMAN;sp|Q15366-5|PCBP2_HUMAN;sp|Q15366-6|PCBP2_HUMAN;sp|Q15366-3|PCBP2_HUMAN;sp|Q15366|PCBP2_HUMAN;sp|Q15366-2|PCBP2_HUMAN	yes	no	0	0	0	0	0			1							53.042	53.042	3	1.6296E-08	15032	20190821_JH_WT_Ubi	115.26	65.274	3381300	0	0	3381300	0	0	0	0	0	0			4232	1342	3718	11806	12387	12387				1
QVVESAYEVIK	Unmodified	1263.6711	0.67106787	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN	yes	no	0	0	0	0	0			1							33.957	33.957	2	0.0042666	7608	20190821_JH_WT_Ubi	103.7	64.396	7166600	0	0	7166600	0	0	0	0	0	0			4233	373	3719	11807	12388	12388				0
QVVESAYEVIKLK	GlyGly (K)	1618.893	0.89302232	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN	yes	no	0	0	1	0	1		1						1	1	35.238	35.238	3	0.00031051	7930	20190821_JH_MUT_Ubi	118.61	69.418	5107800	0	1393400	0	0	0	0	0	1703500	2010900			4234	373	3720	11808;11809;11810	12389;12390;12391	12389		337		3
QVVRQMIQQAQK	3 Deamidation (NQ)	1458.7501	0.75006325	1647	sp|Q8NEG4|FA83F_HUMAN	yes	yes	0	3	0	0	1						1				27.155	27.155	3	0.03115	6325	20190902_JH_MUT_Ubi_2	47.302	12.078	887690	0	0	0	0	0	887690	0	0	0			4235	1647	3721	11811	12392	12392	1147;1148;1149			0
QVYEEEYGSSLEDDVVGDTSGYYQR	Unmodified	2887.2308	0.23080697	479	sp|P08758|ANXA5_HUMAN	yes	yes	0	0	0	0	0			1						1	43.245	43.245	3	1.0458E-15	12604	20190902_JH_WT_Ubi_3	130.49	98.463	5100700	0	0	3232600	0	0	0	0	0	1868000			4236	479	3722	11812;11813	12393;12394	12394				2
QYASLTGTQALPPLFSLGYHQSR	Unmodified	2534.2918	0.29177193	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	0	1	1	1			1		1	1	46.47	46.47	3	2.8404E-16	12071	20190821_JH_MUT_Ubi	140.27	99.752	84089000	3730300	13648000	40905000	0	0	5352600	0	10570000	9883400			4237	1304	3723	11814;11815;11816;11817;11818;11819	12395;12396;12397;12398;12399;12400;12401	12396				7
RAAEDDEDDDVDTK	Unmodified	1592.6438	0.64380308	431	sp|P06454-2|PTMA_HUMAN;sp|P06454|PTMA_HUMAN	yes	no	0	0	0	0	1	1		1	1	1			1	1	17.029	17.029	3	5.2046E-67	3095	20190821_JH_WT_Ubi	211.82	178.28	26722000	1374200	0	0	1750600	1553500	0	0	11884000	10159000			4238	431	3724	11820;11821;11822;11823;11824;11825	12402;12403;12404;12405;12406;12407	12405				6
RAAEDDEDDDVDTKK	GlyGly (K)	1834.7817	0.78169355	431	sp|P06454-2|PTMA_HUMAN;sp|P06454|PTMA_HUMAN	yes	no	0	0	1	0	2	2	1	1							15.965	15.965	3	5.5062E-27	2880	20190821_JH_WT_Ubi	185.86	119.96	1510800	0	548020	962830	0	0	0	0	0	0			4239	431	3725	11826;11827;11828;11829	12408;12409;12410;12411	12411		418;419		4
RAEDGSVIDYELIDQDAR	Unmodified	2063.976	0.97597668	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	0	0	1	1		1		1			1	1	38.265	38.265	3	1.3775E-53	11341	20190902_JH_WT_Ubi_2	213.02	101.37	121490000	4688200	0	42873000	0	8778100	0	0	28354000	36797000			4240	446	3726	11830;11831;11832;11833;11834	12412;12413;12414;12415;12416	12415				4
RDDGTGQLLLPLSDAR	Unmodified	1725.901	0.90096124	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	1			1					1	1	39.83	39.83	3	0.020876	9876	20190821_JH_WT_Ubi	61.962	2.6563	18178000	0	0	5703500	0	0	0	0	6325000	6149400			4241	1332	3727	11835;11836;11837	12417;12418;12419	12417				3
RDEEGNEIKESNAR	GlyGly (K)	1759.8085	0.80851742	1697	sp|Q8WVC0|LEO1_HUMAN	yes	yes	0	0	1	0	2						1				16.153	16.153	3	0.023484	3633	20190902_JH_MUT_Ubi_2	93.228	41.29	824270	0	0	0	0	0	824270	0	0	0			4242	1697	3728	11838	12420	12420		1691		1
RDICIAFQETLPTLQPNQNMTSEERQR	Oxidation (M);4 Deamidation (NQ)	3294.5133	0.51326996	1683	sp|Q8TE23|TS1R2_HUMAN	yes	yes	0	4	0	1	2					1					54.06	54.06	3	0.0067272	12868	20190902_JH_EV_Ubi_3	48.389	14.177	568230	0	0	0	0	568230	0	0	0	0			4243	1683	3729	11839	12421	12421	548;549;1160;1161;1162		965	1
RDQNYPGAIAIHHPNVAEK	Unmodified	2129.0766	0.076634197	10	CON__P15636	yes	yes	0	0	0	0	1			1					1	1	24.963	24.963	4	0.0012638	6652	20190902_JH_WT_Ubi_2	73.735	40.295	87297000	0	0	26393000	0	0	0	0	33271000	27633000		+	4244	10	3730	11840;11841;11842	12422;12423;12424	12423				3
RDSHLTLLNQLLQGLR	Unmodified	1876.0643	0.064278597	2018	sp|Q9NRX2|RM17_HUMAN	yes	yes	0	0	0	0	1			1						1	46.636	46.636	4	0.0077702	13635	20190902_JH_WT_Ubi_3	64.244	45.411	8275600	0	0	6280100	0	0	0	0	0	1995500			4245	2018	3731	11843;11844	12425;12426	12426				2
REDEEESLNEVGYDDIGGCR	Unmodified	2340.9764	0.97644696	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	1			1					1	1	33.81	33.81	3	5.3171E-18	9339	20190902_JH_WT_Ubi_3	149.95	122.24	15845000	0	0	5021700	0	0	0	0	5750500	5073300			4246	974	3732	11845;11846;11847	12427;12428;12429	12429				3
REDLVVAPAGITLK	Unmodified	1480.8613	0.86132826	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	0	0	1	1									37.384	37.384	3	0.034298	9211	20190821_JH_EV_Ubi	58.071	30.662	0	0	0	0	0	0	0	0	0	0			4247	533	3733	11848	12430	12430				1
REEAAVDAQQQK	Unmodified	1371.6743	0.67425577	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	1			1							14.248	14.248	3	0.00034925	2655	20190821_JH_WT_Ubi	126.34	70.623	589650	0	0	589650	0	0	0	0	0	0			4248	1332	3734	11849	12431	12431				1
REESPMDVDQPSPSAQDTQSIASDGTPQGEKEK	Oxidation (M);GlyGly (K)	3673.6286	0.62857031	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	1	1	2		1	1	1	1		1			26.598	26.598	4	0.00049894	5853	20190902_JH_MUT_Ubi_3	55.406	36.028	5784000	0	649230	1528800	1666400	1091600	0	847940	0	0			4249	1539	3735	11850;11851;11852;11853;11854	12432;12433;12434;12435;12436	12435		1529;1530	917	5
REGVCAASLPTTMGVVAGILVQNVLK	Oxidation (M)	2698.451	0.45099146	1923	sp|Q9GZZ9-2|UBA5_HUMAN;sp|Q9GZZ9|UBA5_HUMAN	yes	no	0	0	0	1	1		1								48.748	48.748	3	0.00055427	12797	20190821_JH_MUT_Ubi	73.672	39.84	681950	0	681950	0	0	0	0	0	0	0			4250	1923	3736	11855	12437	12437			1049	1
REHALTSGTIK	Unmodified	1211.6622	0.66223452	1343	sp|Q15369-2|ELOC_HUMAN;sp|Q15369|ELOC_HUMAN	yes	no	0	0	0	0	1			1					1	1	16.537	16.537	3	0.0045918	3918	20190902_JH_WT_Ubi_3	103.44	61.735	11051000	0	0	2587300	0	0	0	0	4182800	4280600			4251	1343	3737	11856;11857;11858	12438;12439;12440	12440				3
REIVHLQAGQCGNQIGAK	Unmodified	1978.0167	0.016676477	1099	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN	yes	no	0	0	0	0	1	1	1	1	1	1			1	1	24.455	24.455	3;4	4.0401E-05	6492	20190902_JH_WT_Ubi_2	109.67	0	29407000	5090900	470380	3341200	4788200	2857800	0	0	6157900	6701200			4252	1099	3738	11859;11860;11861;11862;11863;11864;11865	12441;12442;12443;12444;12445;12446;12447	12446				7
REKVIETPENDFK	2 GlyGly (K);Deamidation (NQ)	1832.8905	0.89045614	1929	sp|Q9H0G5|NSRP1_HUMAN	yes	yes	0	1	2	0	2									1	51.056	51.056	2	0.024232	14996	20190902_JH_WT_Ubi_3	64.374	40.62	11459000	0	0	0	0	0	0	0	0	11459000			4253	1929	3739	11866	12448	12448	618	1865;1866		0
REPGYTPPGAGNQNPPGMYPVTGPK	Oxidation (M)	2597.2333	0.23327077	1741	sp|Q93052|LPP_HUMAN	yes	yes	0	0	0	1	1								1	1	30.176	30.176	3	4.8687E-05	8466	20190902_JH_WT_Ubi_2	85.881	41.153	3990200	0	0	0	0	0	0	0	2324400	1665800			4254	1741	3740	11867;11868	12449;12450	12449			991	2
REPWLLPSQHNDIIR	Unmodified	1872.9959	0.99586468	1304	sp|Q14697|GANAB_HUMAN;sp|Q14697-2|GANAB_HUMAN	yes	no	0	0	0	0	1			1							34.357	34.357	3	0.017811	7782	20190821_JH_WT_Ubi	67.648	38.709	4614900	0	0	4614900	0	0	0	0	0	0			4255	1304	3741	11869	12451	12451				1
RETYGQIQVCAK	2 Deamidation (NQ)	1453.6871	0.68712864	1756	sp|Q96AV8-2|E2F7_HUMAN;sp|Q96AV8-3|E2F7_HUMAN;sp|Q96AV8|E2F7_HUMAN	yes	no	0	2	0	0	1							1			2.4637	2.4637	2	0.029055	623	20190902_JH_MUT_Ubi_3	55.549	12.037	9029500	0	0	0	0	0	0	9029500	0	0			4256	1756	3742	11870	12452	12452	1181;1182			0
RFEIINAIYEPTEEECEWKPDEEDEISEELK	Unmodified	3868.7513	0.75131121	980	sp|P55209|NP1L1_HUMAN;sp|P55209-2|NP1L1_HUMAN	yes	no	0	0	0	0	2								1		46.538	46.538	4	0.012941	14046	20190902_JH_WT_Ubi_2	42.295	20.991	5454600	0	0	0	0	0	0	0	5454600	0			4257	980	3743	11871	12453	12453				1
RFPHGIPFLADYVHSLGLK	Unmodified	2166.1738	0.17382905	595	sp|P17050|NAGAB_HUMAN	yes	yes	0	0	0	0	1			1							46.276	46.276	4	0.021548	12559	20190821_JH_WT_Ubi	45.384	8.4565	1441100	0	0	1441100	0	0	0	0	0	0			4258	595	3744	11872	12454	12454				1
RGEAHLAVNDFELAR	Unmodified	1696.8645	0.86451616	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	0	0	0	1		1								31.513	31.513	3	0.031834	6394	20190821_JH_MUT_Ubi	55.173	11.99	284240	0	284240	0	0	0	0	0	0	0			4259	1142	3745	11873	12455	12455				0
RGFAFVTFDDHDSVDK	Unmodified	1854.8537	0.8536767	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	yes	no	0	0	0	0	1		1	1			1	1	1	1	35.384	35.384	3	3.3065E-25	10362	20190902_JH_WT_Ubi_2	176.29	122.02	56462000	0	3761200	18375000	0	0	4714600	4126100	13957000	11529000			4260	492	3746	11874;11875;11876;11877;11878;11879	12456;12457;12458;12459;12460;12461	12460				6
RGFAFVTFDDHDTVDK	Unmodified	1868.8693	0.86932676	931	sp|P51991-2|ROA3_HUMAN;sp|P51991|ROA3_HUMAN	yes	no	0	0	0	0	1	1	1	1			1	1	1	1	35.813	35.813	3	1.3103E-18	10455	20190902_JH_WT_Ubi_2	160.93	126.83	26737000	1097800	1800300	9237700	0	0	1706000	0	6798900	6096600			4261	931	3747	11880;11881;11882;11883;11884;11885;11886	12462;12463;12464;12465;12466;12467;12468	12467				7
RGFGFVTFDDHDPVDK	Unmodified	1850.8588	0.85876208	653	sp|P22626-2|ROA2_HUMAN;sp|P22626|ROA2_HUMAN	yes	no	0	0	0	0	1		1	1					1	1	36.403	36.403	3	6.132E-10	8356	20190821_JH_MUT_Ubi	142.95	92.49	36052000	0	2888900	14886000	0	0	0	0	11325000	6951700			4262	653	3748	11887;11888;11889;11890	12469;12470;12471;12472	12469				4
RGFGFVYFQNHDAADK	Unmodified	1870.8751	0.87508084	1218	sp|Q13151|ROA0_HUMAN	yes	yes	0	0	0	0	1		1	1			1				32.976	32.976	3	0.0026944	8284	20190902_JH_MUT_Ubi_2	85.469	47.169	5418000	0	1021400	2983900	0	0	1412600	0	0	0			4263	1218	3749	11891;11892;11893	12473;12474;12475	12474				3
RGPAVLATKAAAGTK	GlyGly (K)	1524.8736	0.87362428	2172	sp|Q9UM54-5|MYO6_HUMAN;sp|Q9UM54-2|MYO6_HUMAN	yes	no	0	0	1	0	2		1		1	1	1	1	1		20.475	20.475	3	3.6991E-14	3216	20190821_JH_MUT_Ubi	161.49	125.72	29505000	0	4306400	0	2880900	2464400	7723500	3572300	8557400	0			4264	2172	3750	11894;11895;11896;11897;11898;11899	12476;12477;12478;12479;12480;12481	12478		2026		6
RGQTCVVHYTGMLEDGK	Oxidation (M)	1965.9037	0.90368013	1073	sp|P62942|FKB1A_HUMAN	yes	yes	0	0	0	1	1			1						1	23.944	23.944	3	0.00056814	6134	20190902_JH_WT_Ubi_3	100.04	63.272	13047000	0	0	4151900	0	0	0	0	0	8895000			4265	1073	3751	11900;11901	12482;12483	12483			658	2
RGQTCVVHYTGMLEDGKK	Oxidation (M);GlyGly (K)	2208.0416	0.041570599	1073	sp|P62942|FKB1A_HUMAN	yes	yes	0	0	1	1	2									1	21.695	21.695	4	0.018464	5547	20190902_JH_WT_Ubi_3	54.811	17.041	6643800	0	0	0	0	0	0	0	0	6643800			4266	1073	3752	11902	12484	12484		1048;1049	658	1
RGSNTTSHLHQAVAK	Unmodified	1605.8336	0.83355038	655	sp|P22695|QCR2_HUMAN	yes	yes	0	0	0	0	1			1						1	11.539	11.539	4	0.00057597	2250	20190821_JH_WT_Ubi	99.834	68.113	14774000	0	0	7020000	0	0	0	0	0	7753700			4267	655	3753	11903;11904	12485;12486	12485				2
RHDLLNKFYQAAGR	Deamidation (NQ)	1688.8747	0.87468691	1818	sp|Q96RY7-2|IF140_HUMAN;sp|Q96RY7|IF140_HUMAN	yes	no	0	1	0	0	2			1							1.5638	1.5638	2	0.034746	294	20190821_JH_WT_Ubi	51.436	7.8011	0	0	0	0	0	0	0	0	0	0			4268	1818	3754	11905	12487	12487	1200			1
RHLGPSEKVQVTEAK	GlyGly (K)	1791.9591	0.95914482	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN	yes	no	0	0	1	0	2							1			18.943	18.943	4	0.020282	4059	20190902_JH_MUT_Ubi_3	56.286	31.052	1957500	0	0	0	0	0	0	1957500	0	0			4269	186	3755	11906	12488	12488		163;164		1
RIDGFMELCQNDQIVLLK	3 Deamidation (NQ)	2194.065	0.064991382	774	sp|P35398-4|RORA_HUMAN;sp|P35398|RORA_HUMAN;sp|P35398-3|RORA_HUMAN;sp|P35398-1|RORA_HUMAN	yes	no	0	3	0	0	1					1					47.989	47.989	3	0.017368	11953	20190902_JH_EV_Ubi_3	55.755	18.518	889700	0	0	0	0	889700	0	0	0	0			4270	774	3756	11907	12489	12489	273;899;900			1
RIMGMQLDR	2 Oxidation (M)	1150.5587	0.55869743	1938	sp|Q9H2E6|SEM6A_HUMAN;sp|Q9H2E6-2|SEM6A_HUMAN	yes	no	0	0	0	2	1			1							20.774	20.774	3	0.028438	3828	20190821_JH_WT_Ubi	51.066	15.158	1168900	0	0	1168900	0	0	0	0	0	0			4271	1938	3757	11908	12490	12490			1057;1058	1
RKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	GlyGly (K)	3452.7259	0.72592077	503	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN	yes	no	0	0	1	0	2	1	1	1			1	1		1	40.327	40.327	4	1.8862E-09	9767	20190821_JH_MUT_Ubi	95.444	69.942	21038000	1399800	3444100	8747400	0	0	3593200	1594300	0	2259100			4272	503	3758	11909;11910;11911;11912;11913;11914	12491;12492;12493;12494;12495;12496;12497	12492		487;491		7
RKGSQITQQSTNQSR	Deamidation (NQ)	1718.866	0.86597272	909	sp|P50750|CDK9_HUMAN;sp|P50750-2|CDK9_HUMAN	yes	no	0	1	0	0	2									1	41.26	41.26	2	0.013789	11925	20190902_JH_WT_Ubi_3	68.536	25.733	0	0	0	0	0	0	0	0	0	0			4273	909	3759	11915	12498	12498	936			1
RKPADLQNLAPGTHPPFITFNSEVK	Unmodified	2776.466	0.4660479	2256	sp|Q9Y696|CLIC4_HUMAN	yes	yes	0	0	0	0	2			1							37.057	37.057	4	0.0078849	8789	20190821_JH_WT_Ubi	52.061	19.67	6243800	0	0	6243800	0	0	0	0	0	0			4274	2256	3760	11916	12499	12499				1
RKTEEAAAANK	2 GlyGly (K);Deamidation (NQ)	1416.6957	0.69571949	333	sp|O95239-2|KIF4A_HUMAN;sp|O95239|KIF4A_HUMAN;sp|Q2VIQ3|KIF4B_HUMAN	yes	no	0	1	2	0	2			1							48.734	48.734	2	0.033617	13523	20190821_JH_WT_Ubi	52.579	8.7708	0	0	0	0	0	0	0	0	0	0			4275	333	3761	11917	12500	12500	107			1
RLAAVALINAAIQK	Unmodified	1450.8984	0.89838247	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	1		1		1		1	1			39.037	39.037	3	1.492E-14	9864	20190902_JH_MUT_Ubi_3	159.44	132.04	4971100	0	1500900	0	298730	0	2301500	870010	0	0			4276	863	3762	11918;11919;11920;11921	12501;12502;12503;12504	12504				4
RLEAELAAHEPAIQGVLDTGK	Unmodified	2217.1753	0.17534519	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	1		1	1			1	1			36.573	36.573	3	0.0088708	9753	20190902_JH_MUT_Ubi_2	60.765	35.175	7335700	0	1899400	3837700	0	0	1598600	0	0	0			4277	1262	3763	11922;11923;11924;11925	12505;12506;12507;12508	12506				4
RLETFLSLLVQNLAPAETHT	Unmodified	2252.2165	0.21648172	885	sp|P49441|INPP_HUMAN	yes	yes	0	0	0	0	1			1							54.917	54.917	3	4.4447E-05	15772	20190821_JH_WT_Ubi	102.89	78.784	3237400	0	0	3237400	0	0	0	0	0	0			4278	885	3764	11926	12509	12509				1
RLNIIIVAEGAIDTQNK	Unmodified	1867.0527	0.052710858	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	1	1	1	1							42.089	42.089	3	5.857E-10	10760	20190821_JH_WT_Ubi	139.49	101.72	5161100	972580	645880	3542600	0	0	0	0	0	0			4279	1136	3765	11927;11928;11929	12510;12511;12512	12512				2
RLNIIIVAEGAIDTQNKPITSEK	Unmodified	2522.4068	0.40680169	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	0	2		1								40.367	40.367	3	1.1925E-08	9645	20190821_JH_MUT_Ubi	122.47	97.059	601030	0	601030	0	0	0	0	0	0	0			4280	1136	3766	11930	12513	12513				1
RLPGAIDVIGQTITISR	Unmodified	1809.0472	0.047231549	1492	sp|Q6UN15-4|FIP1_HUMAN;sp|Q6UN15-3|FIP1_HUMAN;sp|Q6UN15-5|FIP1_HUMAN;sp|Q6UN15|FIP1_HUMAN	yes	no	0	0	0	0	1		1								43.502	43.502	3	0.0064681	10895	20190821_JH_MUT_Ubi	72.583	55.84	930420	0	930420	0	0	0	0	0	0	0			4281	1492	3767	11931	12514	12514				1
RLPVATIFTTHATLLGR	Unmodified	1866.084	0.083951407	549	sp|P13807-2|GYS1_HUMAN;sp|P13807|GYS1_HUMAN	yes	no	0	0	0	0	1			1					1	1	39.631	39.631	3	2.0129E-07	9874	20190821_JH_WT_Ubi	123.76	104.93	8792400	0	0	4963800	0	0	0	0	1901200	1927300			4282	549	3768	11932;11933;11934	12515;12516;12517	12515				3
RLPVTNEMVHNLVAIELAYINTK	Oxidation (M)	2653.4262	0.42615692	127	sp|O00429-4|DNM1L_HUMAN;sp|O00429-5|DNM1L_HUMAN;sp|O00429-3|DNM1L_HUMAN;sp|O00429-2|DNM1L_HUMAN;sp|O00429|DNM1L_HUMAN;sp|O00429-8|DNM1L_HUMAN;sp|O00429-6|DNM1L_HUMAN;sp|O00429-7|DNM1L_HUMAN	yes	no	0	0	0	1	1								1		45.96	45.96	4	0.024579	13837	20190902_JH_WT_Ubi_2	44.759	28.253	1187600	0	0	0	0	0	0	0	1187600	0			4283	127	3769	11935	12518	12518			59	0
RNDFQLIGIQDGYLSLLQDSGEVR	Unmodified	2735.3879	0.38785716	1084	sp|P63241|IF5A1_HUMAN;sp|P63241-2|IF5A1_HUMAN	yes	no	0	0	0	0	1		1	1				1	1	1	52.342	52.342	3	2.6365E-46	15662	20190902_JH_WT_Ubi_2	186.06	154.68	35195000	0	2970000	12256000	0	0	0	1260700	13499000	5208600			4284	1084	3770	11936;11937;11938;11939;11940	12519;12520;12521;12522;12523	12522				5
RNGSIVSMNLK	Oxidation (M);Deamidation (NQ)	1234.634	0.63397086	1734	sp|Q92953|KCNB2_HUMAN	yes	yes	0	1	0	1	1								1		26.088	26.088	2	0.031029	7041	20190902_JH_WT_Ubi_2	49.715	12.651	3450200	0	0	0	0	0	0	0	3450200	0			4285	1734	3771	11941	12524	12524	564		984	0
RNLDNLLGKMQK	Oxidation (M)	1444.782	0.78203208	1460	sp|Q659C4-8|LAR1B_HUMAN	yes	yes	0	0	0	1	2			1			1		1	1	40.84	40.84	3	0.015881	12184	20190902_JH_WT_Ubi_2	83.081	44.501	16894000	0	0	9440800	0	0	945030	0	3535700	2972600			4286	1460	3772	11942;11943;11944;11945	12525;12526;12527;12528	12527			891	3
RNNSSLMVPK	Deamidation (NQ)	1145.5863	0.58629239	1368	sp|Q15842|KCNJ8_HUMAN	yes	yes	0	1	0	0	1	1									16.748	16.748	2	0.023013	2817	20190821_JH_EV_Ubi	66.351	12.797	844950	844950	0	0	0	0	0	0	0	0			4287	1368	3773	11946	12529	12529	435			0
RNQEHEGKVDSPK	GlyGly (K);2 Deamidation (NQ)	1638.7598	0.75977631	1501	sp|Q6ZMV5|P4R3C_HUMAN	yes	yes	0	2	1	0	2								1		44.788	44.788	2	0.006788	13419	20190902_JH_WT_Ubi_2	80.688	32.248	3985100	0	0	0	0	0	0	0	3985100	0			4288	1501	3774	11947	12530	12530	475;1089	1504		0
RNSTIPTKQTQIFTTYSDNQPGVLIQVYEGER	GlyGly (K);2 Deamidation (NQ)	3798.8701	0.87006163	503;766	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN;sp|P34931|HS71L_HUMAN	no	no	0	2	1	0	2			1							39.122	39.122	4	0.00059515	9585	20190821_JH_WT_Ubi	52.463	9.0939	4776200	0	0	4776200	0	0	0	0	0	0			4289	503;766	3775	11948	12531	12531	192;850;851;852	490		1
RPACTLKPECVQQLLVCSQEAK	Unmodified	2614.3029	0.30294702	754	sp|P32320|CDD_HUMAN	yes	yes	0	0	0	0	2			1						1	34.704	34.704	4	0.012679	7943	20190821_JH_WT_Ubi	54.15	33.336	26371000	0	0	18052000	0	0	0	0	0	8318700			4290	754	3776	11949;11950	12532;12533	12532				2
RPAGSVQNPVYHNQPLNPAPSR	Unmodified	2398.2254	0.2254237	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	0	0	1	1			1						25.908	25.908	4	0.013796	5000	20190821_JH_EV_Ubi	47.726	22.361	3627400	988330	0	0	2639100	0	0	0	0	0			4291	382	3777	11951;11952	12534;12535	12534				2
RPDVVENQPDAASQLNVDASGNLAK	Unmodified	2607.2889	0.2888714	2072	sp|Q9NZL9-3|MAT2B_HUMAN;sp|Q9NZL9-4|MAT2B_HUMAN;sp|Q9NZL9-2|MAT2B_HUMAN;sp|Q9NZL9|MAT2B_HUMAN	yes	no	0	0	0	0	1								1		33.799	33.799	3	0.0024961	9698	20190902_JH_WT_Ubi_2	69.435	35.426	0	0	0	0	0	0	0	0	0	0			4292	2072	3778	11953	12536	12536				1
RPEPPSTSTLKQVTK	GlyGly (K)	1781.9636	0.9635615	2024	sp|Q9NS91|RAD18_HUMAN	yes	yes	0	0	1	0	2						1				23.717	23.717	3	0.0067489	5312	20190902_JH_MUT_Ubi_2	103.6	63.367	3234200	0	0	0	0	0	3234200	0	0	0			4293	2024	3779	11954	12537	12537		1927		1
RPETISEPKTYVDLTNEETTDSTTSK	GlyGly (K)	3055.4469	0.44694776	351	sp|O95551|TYDP2_HUMAN;sp|O95551-2|TYDP2_HUMAN	yes	no	0	0	1	0	2				1						31.465	31.465	4	0.018098	7406	20190902_JH_EV_Ubi_2	41.431	19.031	970730	0	0	0	970730	0	0	0	0	0			4294	351	3780	11955	12538	12538		319		1
RPFGISALIVGFDFDGTPR	Unmodified	2064.0793	0.079259959	156	sp|O14818|PSA7_HUMAN;sp|O14818-2|PSA7_HUMAN	yes	no	0	0	0	0	1			1					1		51.773	51.773	3	1.2231E-17	14585	20190821_JH_WT_Ubi	148.97	90.87	6469300	0	0	3713200	0	0	0	0	2756100	0			4295	156	3781	11956;11957	12539;12540	12539				2
RPFSQCLSTIISPLFAELK	Unmodified	2206.182	0.18201047	2259	sp|Q9Y6E0-2|STK24_HUMAN;sp|Q9Y6E0|STK24_HUMAN	yes	no	0	0	0	0	1		1	1							51.785	51.785	3	0.00031839	13733	20190821_JH_MUT_Ubi	91.547	28.21	6468600	0	1689300	4779300	0	0	0	0	0	0			4296	2259	3782	11958;11959	12541;12542	12541				2
RPHPQHSQQPPPPQQER	Unmodified	2043.0147	0.014702642	362	sp|O95819-4|M4K4_HUMAN;sp|O95819-2|M4K4_HUMAN;sp|O95819|M4K4_HUMAN;sp|O95819-5|M4K4_HUMAN;sp|O95819-6|M4K4_HUMAN;sp|O95819-3|M4K4_HUMAN	yes	no	0	0	0	0	1			1					1		15.193	15.193	4	0.013413	2767	20190821_JH_WT_Ubi	55.097	22.822	1641100	0	0	859300	0	0	0	0	781800	0			4297	362	3783	11960;11961	12543;12544	12543				2
RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYK	Unmodified	3884.9347	0.93466799	1308	sp|Q14847-3|LASP1_HUMAN;sp|Q14847|LASP1_HUMAN;sp|Q14847-2|LASP1_HUMAN	yes	no	0	0	0	0	1			1					1		29.801	29.801	4	0.0049975	8269	20190902_JH_WT_Ubi_2	40.952	20.883	6707000	0	0	2888800	0	0	0	0	3818200	0			4298	1308	3784	11962;11963	12545;12546	12546				2
RPLIDQVVQTALSETQDPEEVSVTVK	Unmodified	2880.508	0.50803187	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	1		1	1							49.397	49.397	3	2.4352E-15	13021	20190821_JH_MUT_Ubi	126.96	93.28	3671100	0	713280	2957800	0	0	0	0	0	0			4299	1123	3785	11964;11965	12547;12548;12549	12548				3
RPLILQLVHVSQEDK	Unmodified	1774.0101	0.010117761	127	sp|O00429-4|DNM1L_HUMAN;sp|O00429-5|DNM1L_HUMAN;sp|O00429-3|DNM1L_HUMAN;sp|O00429-2|DNM1L_HUMAN;sp|O00429|DNM1L_HUMAN;sp|O00429-8|DNM1L_HUMAN;sp|O00429-6|DNM1L_HUMAN	yes	no	0	0	0	0	1	1	1	1	1		1	1	1	1	35.818	35.818	3	6.645E-16	8843	20190821_JH_EV_Ubi	169.79	126	90873000	14752000	4946900	27102000	3753600	0	6523800	4280900	12995000	16518000			4300	127	3786	11966;11967;11968;11969;11970;11971;11972;11973	12550;12551;12552;12553;12554;12555;12556;12557	12550				8
RPNVVLLLTDDQDEVLGGMTPLK	Unmodified	2522.3414	0.34142424	574	sp|P15586|GNS_HUMAN	yes	yes	0	0	0	0	1			1							49.214	49.214	3	0.0014976	13696	20190821_JH_WT_Ubi	71.434	43.51	1017400	0	0	1017400	0	0	0	0	0	0			4301	574	3787	11974	12558	12558				1
RPPEPTTPWQEDPEPEDENLYEK	Unmodified	2795.2562	0.25623386	2054	sp|Q9NX14|NDUBB_HUMAN;sp|Q9NX14-2|NDUBB_HUMAN	yes	no	0	0	0	0	1			1						1	36.298	36.298	3	1.0849E-08	10203	20190902_JH_WT_Ubi_3	116.04	77.372	5564500	0	0	3621500	0	0	0	0	0	1943000			4302	2054	3788	11975;11976	12559;12560	12560				2
RPPGVLHCTTK	Unmodified	1264.671	0.67102507	490	sp|P09543-2|CN37_HUMAN;sp|P09543|CN37_HUMAN	yes	no	0	0	0	0	1			1							16.556	16.556	3	0.018531	3010	20190821_JH_WT_Ubi	83.045	36.982	2541700	0	0	2541700	0	0	0	0	0	0			4303	490	3789	11977	12561	12561				1
RPQYSNPPVQGEVMEGADNQGAGEQGR	Oxidation (M)	2886.2951	0.29509576	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	0	1	1			1	1				1	1	26.382	26.382	3	5.947E-105	7162	20190902_JH_WT_Ubi_2	237.51	191.16	17663000	0	0	3331400	1327600	0	0	0	6515200	6489100			4304	1090	3790	11978;11979;11980;11981	12562;12563;12564;12565;12566	12564			672	5
RPQYSNPPVQGEVMEGADNQGAGEQGR	Unmodified	2870.3002	0.30018114	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	0	0	1			1					1	1	29.032	29.032	3	2.2633E-12	8062	20190902_JH_WT_Ubi_2	112.8	80.079	8109200	0	0	2642000	0	0	0	0	3882100	1585100			4305	1090	3790	11982;11983;11984	12567;12568;12569	12568				3
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	Unmodified	3222.5225	0.52246994	1090	sp|P67809|YBOX1_HUMAN	yes	yes	0	0	0	0	2								1		28.17	28.17	4	0.020563	7715	20190902_JH_WT_Ubi_2	39.048	14.772	1173700	0	0	0	0	0	0	0	1173700	0			4306	1090	3791	11985	12570	12570				1
RPSQAEEQALSMDFKTLTEGDSPGSQ	Oxidation (M);GlyGly (K)	2938.3251	0.32505849	886	sp|P49447|CY561_HUMAN	yes	yes	0	0	1	1	2	1	1		1	2	1	1	1	1	39.278	39.278	3	8.9641E-34	9750	20190902_JH_EV_Ubi_3	165	133.38	25848000	5766800	2707300	0	2156400	3414500	4765000	2754400	2290600	1993400			4307	886	3792	11986;11987;11988;11989;11990;11991;11992;11993;11994	12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581;12582	12575		861	563	12
RPSQAEEQALSMDFKTLTEGDSPGSQ	GlyGly (K)	2922.3301	0.33014386	886	sp|P49447|CY561_HUMAN	yes	yes	0	0	1	0	2	1	1	1		1		1	1		41.083	41.083	3	1.781E-19	10623	20190821_JH_EV_Ubi	144.4	114.44	24142000	5280400	3996500	10055000	0	805780	0	2055500	1948700	0			4308	886	3792	11995;11996;11997;11998;11999;12000	12583;12584;12585;12586;12587;12588;12589	12583		861		7
RPSSCTHTMYSIMK	2 Oxidation (M);GlyGly (K)	1843.8015	0.80152325	1473	sp|Q6J9G0|STYK1_HUMAN	yes	yes	0	0	1	2	1			1							43.027	43.027	3	0.029142	11211	20190821_JH_WT_Ubi	41.644	14.701	12037000	0	0	12037000	0	0	0	0	0	0			4309	1473	3793	12001	12590	12590		1485	896;897	1
RPVGDPFDVKTEQGPQIDQK	GlyGly (K)	2367.1819	0.18188713	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	0	2		1				1	1	1	1	30.067	30.067	3;4	2.605E-05	8470	20190902_JH_WT_Ubi_2	102.03	61.226	24554000	0	1507400	0	0	0	1904100	4676500	10561000	5905400			4310	865	3794	12002;12003;12004;12005;12006	12591;12592;12593;12594;12595	12594		844;845		5
RPVKDGGGTNSITVR	GlyGly (K)	1669.886	0.88597988	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	2	1			1	1	1	1	1	1	18.898	18.898	3	3.4519E-21	4146	20190902_JH_MUT_Ubi_2	182.7	148.51	160490000	13671000	0	0	22365000	38355000	53014000	11143000	12450000	9492600			4311	760	3795	12007;12008;12009;12010;12011;12012;12013	12596;12597;12598;12599;12600;12601;12602	12599		740		7
RPVKDGGGTNSITVR	GlyGly (K);Deamidation (NQ)	1670.87	0.86999547	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	0	2	1	1		1	1	1	1	1	1	19.797	19.797	3	6.0991E-48	4146	20190902_JH_EV_Ubi_2	217.79	169.51	72673000	5937400	6519600	0	10109000	6312500	17896000	14484000	6562600	4852000			4312	760	3795	12014;12015;12016;12017;12018;12019;12020;12021	12603;12604;12605;12606;12607;12608;12609;12610	12604	271	740		8
RQANSGLICPEFK	GlyGly (K);2 Deamidation (NQ)	1634.7723	0.77225526	2075	sp|Q9NZR2|LRP1B_HUMAN	yes	yes	0	2	1	0	1							1			26.996	26.996	2	0.030807	6023	20190902_JH_MUT_Ubi_3	54.608	20.521	0	0	0	0	0	0	0	0	0	0			4313	2075	3796	12022	12611	12611	657;1281			1
RQATTIIADNIIFLSDQTK	Unmodified	2147.1586	0.15863249	1158	sp|Q04837|SSBP_HUMAN	yes	yes	0	0	0	0	1	1		1							44.006	44.006	3	0.00037013	11728	20190821_JH_EV_Ubi	89.468	55.374	3495600	1319500	0	2176100	0	0	0	0	0	0			4314	1158	3797	12023;12024	12612;12613	12612				2
RQEQIQAMPLADSQAVR	Oxidation (M)	1955.9847	0.98470765	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	1	1									1	26.877	26.877	3	0.033316	7050	20190902_JH_WT_Ubi_3	57.197	12.39	2265800	0	0	0	0	0	0	0	0	2265800			4315	1332	3798	12025	12614	12614				1
RQGVQVQVSTSNISSLEGAR	Unmodified	2115.1032	0.10324288	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	1	1									32.475	32.475	3	0.031162	7406	20190821_JH_EV_Ubi	49.528	21.316	1169200	1169200	0	0	0	0	0	0	0	0			4316	881	3799	12026	12615	12615				1
RQIMQLNEQLKAVYEFQDLK	2 Deamidation (NQ)	2495.273	0.27301032	78	sp|A4D0S4-3|LAMB4_HUMAN;sp|A4D0S4|LAMB4_HUMAN	yes	no	0	2	0	0	2									1	27.243	27.243	4	0.03151	7166	20190902_JH_WT_Ubi_3	40.616	9.1543	6820600	0	0	0	0	0	0	0	0	6820600			4317	78	3800	12027	12616	12616	739;740			1
RQMAQQNPKMHNSEISK	Oxidation (M);Deamidation (NQ)	2042.9626	0.962592	230	sp|O60248-2|SOX15_HUMAN;sp|O60248|SOX15_HUMAN	yes	no	0	1	0	1	2			1							44.862	44.862	2	0.033887	11970	20190821_JH_WT_Ubi	48.044	7.3197	0	0	0	0	0	0	0	0	0	0			4318	230	3801	12028	12617	12617	72			1
RQTSGGPVDASSEYQQELER	Unmodified	2236.0356	0.035616823	616	sp|P18859|ATP5J_HUMAN;sp|P18859-2|ATP5J_HUMAN	yes	no	0	0	0	0	1									1	28.937	28.937	3	0.0001266	7717	20190902_JH_WT_Ubi_3	94.325	46.777	1830300	0	0	0	0	0	0	0	0	1830300			4319	616	3802	12029	12618	12618				1
RTAAENEFVVLKK	GlyGly (K)	1617.8839	0.88385462	8	CON__P08729	no	no	0	0	1	0	2						1				25.623	25.623	3	0.0094088	5883	20190902_JH_MUT_Ubi_2	109.16	66.074	4062700	0	0	0	0	0	4062700	0	0	0		+	4320	8	3803	12030	12619	12619		28;31		1
RTELFIAAEGIHTGQFVYCGK	Unmodified	2396.1947	0.19470042	1071	sp|P62917|RL8_HUMAN	yes	yes	0	0	0	0	1			1					1		38.71	38.71	4	0.021061	11428	20190902_JH_WT_Ubi_2	44.1	17.132	11505000	0	0	8432700	0	0	0	0	3072200	0			4321	1071	3804	12031;12032	12620;12621	12621				2
RTGAIVDVPVGEELLGR	Unmodified	1779.9843	0.98429694	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN	yes	no	0	0	0	0	1								1	1	40.874	40.874	3	0.014421	12193	20190902_JH_WT_Ubi_2	63.546	31.159	10481000	0	0	0	0	0	0	0	5419700	5061000			4322	680	3805	12033;12034	12622;12623	12622				2
RTPHVQAVQGPLGSPPKR	GlyGly (K)	2038.1184	0.11843943	1332	sp|Q15149|PLEC_HUMAN	yes	yes	0	0	1	0	2			1			1		1		22.475	22.475	4	0.0052499	4235	20190821_JH_WT_Ubi	65.298	31.197	7191000	0	0	2247600	0	0	1087500	0	3855900	0			4323	1332	3806	12035;12036;12037	12624;12625;12626	12625		1385		3
RVAEELALEQAK	Unmodified	1355.7409	0.74087877	2057	sp|Q9NX63|MIC19_HUMAN	yes	yes	0	0	0	0	1					1					23.903	23.903	3	0.03173	5109	20190902_JH_EV_Ubi_3	68.676	3.4964	4489400	0	0	0	0	4489400	0	0	0	0			4324	2057	3807	12038	12627	12627				1
RVELEAALQQAK	Unmodified	1354.7569	0.75686319	11	sp|P19013|K2C4_HUMAN;CON__P19013	yes	no	0	0	0	0	1		1				1	1			29.237	29.237	3	0.0066795	5709	20190821_JH_MUT_Ubi	87.216	36.933	5943300	0	1405000	0	0	0	2430900	2107500	0	0		+	4325	11	3808	12039;12040;12041	12628;12629;12630	12628				2
RVHLEGIFQAVYTAGVVLPK	Unmodified	2196.2419	0.24190861	733	sp|P30419-2|NMT1_HUMAN;sp|P30419|NMT1_HUMAN	yes	no	0	0	0	0	1			1							48.135	48.135	3	3.8816E-05	13287	20190821_JH_WT_Ubi	104.03	72.512	1337000	0	0	1337000	0	0	0	0	0	0			4326	733	3809	12042	12631	12631				1
RVIISAPSADAPMFVMGVNHEK	2 Oxidation (M)	2400.193	0.19298586	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	2	1	1	1	1		1			1	1	33.056	33.056	3	1.9741E-22	9007	20190902_JH_WT_Ubi_3	153.6	115.15	88965000	7711600	5643600	14302000	0	8284000	0	0	27835000	25189000			4327	407	3810	12043;12044;12045;12046;12047;12048	12632;12633;12634;12635;12636;12637	12637			198;199	6
RVIISAPSADAPMFVMGVNHEK	Oxidation (M)	2384.1981	0.19807124	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	1	1	1	1		1		1			1	35.293	35.293	3	3.2784E-22	9800	20190902_JH_WT_Ubi_3	156.7	115.74	21250000	3569400	2880300	0	2190000	0	4838600	0	0	7771300			4328	407	3810	12049;12050;12051;12052;12053	12638;12639;12640;12641;12642	12642			198;199	5
RVIISAPSADAPMFVMGVNHEK	Unmodified	2368.2032	0.20315662	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	1									1	37.796	37.796	3	1.2388E-15	10744	20190902_JH_WT_Ubi_3	139.2	97.21	7275600	0	0	0	0	0	0	0	0	7275600			4329	407	3810	12054	12643	12643				1
RVLGQLHGGPSSCSATGTNR	Unmodified	2054.0076	0.007568354	10	CON__P15636	yes	yes	0	0	0	0	1		1		1			1	1		21.273	21.273	3	2.6821E-18	5424	20190902_JH_WT_Ubi_2	154.48	108.2	51788000	0	952160	0	1144800	0	0	2962900	46728000	0		+	4330	10	3811	12055;12056;12057;12058	12644;12645;12646;12647;12648	12648				5
RVLGQLHGGPSSCSATGTNR	Deamidation (NQ)	2054.9916	0.99158394	10	CON__P15636	yes	yes	0	1	0	0	1								1		22.391	22.391	3	0.0086285	5786	20190902_JH_WT_Ubi_2	70.615	19.772	0	0	0	0	0	0	0	0	0	0		+	4331	10	3811	12059	12649	12649	9;722			1
RVPVLGSLLNLPGIR	Unmodified	1602.9933	0.99334549	2222	sp|Q9Y3E0|GOT1B_HUMAN	yes	yes	0	0	0	0	1	1	1	1		1	1	1	1	1	47.216	47.216	3	3.5229E-11	13782	20190902_JH_WT_Ubi_3	155.39	142.55	32582000	2745500	4364600	10420000	0	2039500	3307600	2141600	2982100	4580500			4332	2222	3812	12060;12061;12062;12063;12064;12065;12066;12067	12650;12651;12652;12653;12654;12655;12656;12657	12657				8
RYIKNHEGGLSTSTEYQDIETEK	2 GlyGly (K);Deamidation (NQ)	2926.3581	0.35807317	2141	sp|Q9UIG8-2|SO3A1_HUMAN	yes	yes	0	1	2	0	2						1				65.335	65.335	3	0.031867	16641	20190902_JH_MUT_Ubi_2	45.363	16.245	0	0	0	0	0	0	0	0	0	0			4333	2141	3813	12068	12658	12658	680			1
SAADSISESVPVGPKVR	GlyGly (K)	1811.9377	0.93774068	849	sp|P45974-2|UBP5_HUMAN;sp|P45974|UBP5_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1	1	1	31.179	31.179	3	5.7703E-08	7282	20190902_JH_EV_Ubi_2	130.47	77.467	115510000	12461000	11918000	0	11762000	13080000	19055000	13421000	18928000	14882000			4334	849	3814	12069;12070;12071;12072;12073;12074;12075;12076	12659;12660;12661;12662;12663;12664;12665;12666	12660		828		8
SAAEEKAAQALSVQDK	GlyGly (K)	1758.8748	0.87480607	823	sp|P41440|S19A1_HUMAN;sp|P41440-2|S19A1_HUMAN	yes	no	0	0	1	0	1	1			1	1	1	1			27.772	27.772	3	1.2288E-13	6217	20190902_JH_EV_Ubi_2	152.94	80.282	124020000	29734000	0	0	18902000	42524000	12556000	20305000	0	0			4335	823	3815	12077;12078;12079;12080;12081	12667;12668;12669;12670;12671	12668		794;796		5
SAATLITHPFHVITLR	Unmodified	1776.0046	0.004638453	2257	sp|Q9Y6C9|MTCH2_HUMAN	yes	yes	0	0	0	0	0	1									38.019	38.019	3	0.004315	9403	20190821_JH_EV_Ubi	72.321	54.577	7366500	7366500	0	0	0	0	0	0	0	0			4336	2257	3816	12082	12672	12672				1
SADESGQALLAAGHYASDEVR	Unmodified	2145.9927	0.99268938	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	0	0			1						1	35.559	35.559	3	0.0019494	8217	20190821_JH_WT_Ubi	66.779	30.141	11686000	0	0	5801200	0	0	0	0	0	5884700			4337	1262	3817	12083;12084	12673;12674	12673				2
SADGAEADGSTQVTVEEPVQQPSVVDR	Acetyl (Protein N-term)	2812.2999	0.29988959	254	sp|O60664-4|PLIN3_HUMAN;sp|O60664-3|PLIN3_HUMAN;sp|O60664|PLIN3_HUMAN	yes	no	1	0	0	0	0								1	1	42.061	42.061	3	9.6473E-14	12136	20190902_JH_WT_Ubi_3	121.92	63.936	4711000	0	0	0	0	0	0	0	2699700	2011300			4338	254	3818	12085;12086	12675;12676	12676				2
SAFLLQNLLVGHPEHK	Unmodified	1801.9839	0.98390301	2071	sp|Q9NZL4|HPBP1_HUMAN;sp|Q9NZL4-3|HPBP1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	39.86	39.86	4	0.00028405	9633	20190821_JH_MUT_Ubi	99.834	61.813	13214000	0	1086100	4184400	0	0	2218300	948860	2108100	2668200			4339	2071	3819	12087;12088;12089;12090;12091;12092	12677;12678;12679;12680;12681;12682	12677				6
SAGCHTLYLSSVSVETLTGALAVQK	Unmodified	2591.3265	0.32650246	1600	sp|Q8IZW8|TENS4_HUMAN	yes	yes	0	0	0	0	0			1							46.156	46.156	3	0.024618	12479	20190821_JH_WT_Ubi	37.856	14.56	2819600	0	0	2819600	0	0	0	0	0	0			4340	1600	3820	12093	12683	12683				1
SAGFHPSGSVLAVGTVTGR	Unmodified	1798.9326	0.93259572	365	sp|O95834|EMAL2_HUMAN;sp|O95834-2|EMAL2_HUMAN;sp|O95834-3|EMAL2_HUMAN	yes	no	0	0	0	0	0			1					1		34.145	34.145	3	0.00051621	9853	20190902_JH_WT_Ubi_2	82.121	46.821	19425000	0	0	7886800	0	0	0	0	11538000	0			4341	365	3821	12094;12095	12684;12685	12685				2
SAGQGEVLVYVEDPAGHQEEAK	Unmodified	2312.0921	0.092069069	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1	1		1	1	1		34.715	34.715	3	9.1296E-16	10131	20190902_JH_WT_Ubi_2	135.26	99.385	54829000	4142700	2793100	21823000	2164800	0	2704400	2057300	19144000	0			4342	637	3822	12096;12097;12098;12099;12100;12101;12102	12686;12687;12688;12689;12690;12691;12692	12692				7
SAILKMILMYEEK	Oxidation (M);GlyGly (K)	1697.8732	0.87321485	968	sp|P55008-2|AIF1_HUMAN;sp|P55008|AIF1_HUMAN	yes	no	0	0	1	1	1								1	1	50.605	50.605	3	0.024167	14758	20190902_JH_WT_Ubi_3	67.519	12.995	5382500	0	0	0	0	0	0	0	2216100	3166400			4343	968	3823	12103;12104	12693;12694	12694		938	604	2
SAKEQVALQEGHK	GlyGly (K)	1537.7849	0.78486885	1610	sp|Q8N370-4|LAT4_HUMAN;sp|Q8N370|LAT4_HUMAN;sp|Q8N370-3|LAT4_HUMAN;sp|Q8N370-2|LAT4_HUMAN	yes	no	0	0	1	0	1						1		1	1	17.575	17.575	3	0.017571	4244	20190902_JH_WT_Ubi_3	69.258	44.727	5744800	0	0	0	0	0	662270	0	2539200	2543400			4344	1610	3824	12105;12106;12107	12695;12696;12697	12697		1608		3
SALSGHLETVILGLLK	Unmodified	1649.9716	0.97160699	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	0	0	0	1	1	1				1	1	1	51.097	51.097	3	1.089E-10	13882	20190821_JH_EV_Ubi	145.61	127.52	18775000	1720700	3855200	7114200	0	0	0	2004200	1036100	3044800			4345	446	3825	12108;12109;12110;12111;12112;12113	12698;12699;12700;12701;12702;12703	12698				6
SALSGHLETVILGLLKTPAQYDASELK	GlyGly (K)	2967.5917	0.59170192	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1		1	1					1	2	51.423	51.423	3;4	8.1146E-07	14964	20190902_JH_WT_Ubi_3	91.565	50.755	44563000	0	8915300	20912000	0	0	0	0	7303800	7431400			4346	446	3826	12114;12115;12116;12117;12118	12704;12705;12706;12707;12708	12708		443;444		5
SALTIQLIQNHFVDEYDPTIEDSYR	Unmodified	2966.4298	0.42978155	384;385	sp|P01111|RASN_HUMAN;sp|P01112-2|RASH_HUMAN;sp|P01112|RASH_HUMAN;sp|P01116-2|RASK_HUMAN;sp|P01116|RASK_HUMAN	no	no	0	0	0	0	0								1		48.605	48.605	3	0.0037859	14633	20190902_JH_WT_Ubi_2	54.985	25.787	4072600	0	0	0	0	0	0	0	4072600	0			4347	384;385	3827	12119	12709	12709				1
SALTVQFVQGIFVEKYDPTIEDSYR	GlyGly (K)	3018.4975	0.49746719	1061	sp|P62834|RAP1A_HUMAN;sp|P61224-3|RAP1B_HUMAN;sp|P61224|RAP1B_HUMAN;sp|A6NIZ1|RP1BL_HUMAN;sp|P61224-2|RAP1B_HUMAN	yes	no	0	0	1	0	1		1					1	1		50.414	50.414	3	6.0297E-26	15128	20190902_JH_WT_Ubi_2	149.12	109.44	52105000	0	19411000	0	0	0	0	3348100	29346000	0			4348	1061	3828	12120;12121;12122	12710;12711;12712	12712		1038		3
SANLVAATLGAILNR	Unmodified	1482.8518	0.85182621	619	sp|P19367-4|HXK1_HUMAN;sp|P19367-2|HXK1_HUMAN;sp|P19367|HXK1_HUMAN;sp|P19367-3|HXK1_HUMAN	yes	no	0	0	0	0	0	1	1	1							53.83	53.83	3	0.0006976	14352	20190821_JH_MUT_Ubi	98.676	36.634	2547100	0	1113300	1433800	0	0	0	0	0	0			4349	619	3829	12123;12124;12125	12713;12714;12715	12714				3
SAPEVTAPGAPAYR	Unmodified	1385.6939	0.69392858	2233	sp|Q9Y4I1-2|MYO5A_HUMAN;sp|Q9Y4I1|MYO5A_HUMAN;sp|Q9Y4I1-3|MYO5A_HUMAN	yes	no	0	0	0	0	0								1		32.506	32.506	3	0.032338	9239	20190902_JH_WT_Ubi_2	47.915	11.498	6945000	0	0	0	0	0	0	0	6945000	0			4350	2233	3830	12126	12716	12716				1
SAQDKALLQMVEAAGAAEDDPLR	Oxidation (M);GlyGly (K)	2528.2177	0.21768029	417	sp|P04920-2|B3A2_HUMAN;sp|P04920-3|B3A2_HUMAN;sp|P04920|B3A2_HUMAN	yes	no	0	0	1	1	1		1								41.642	41.642	3	0.0021386	10202	20190821_JH_MUT_Ubi	67.563	33.896	1263100	0	1263100	0	0	0	0	0	0	0			4351	417	3831	12127	12717;12718	12717		385	210	2
SAQDKALLQMVEAAGAAEDDPLR	GlyGly (K)	2512.2228	0.22276567	417	sp|P04920-2|B3A2_HUMAN;sp|P04920-3|B3A2_HUMAN;sp|P04920|B3A2_HUMAN	yes	no	0	0	1	0	1		1								47.881	47.881	3	0.0024598	12487	20190821_JH_MUT_Ubi	63.398	8.9404	1243500	0	1243500	0	0	0	0	0	0	0			4352	417	3831	12128	12719	12719		385		1
SAQDKALLQMVEAAGAAEDDPLRR	GlyGly (K)	2668.3239	0.32387669	417	sp|P04920-2|B3A2_HUMAN;sp|P04920-3|B3A2_HUMAN;sp|P04920|B3A2_HUMAN	yes	no	0	0	1	0	2		1								44.25	44.25	4	0.0010645	11183	20190821_JH_MUT_Ubi	67.251	37.359	1446800	0	1446800	0	0	0	0	0	0	0			4353	417	3832	12129	12720	12720		385		1
SAQFEHTLLVTDTGCEILTR	Unmodified	2290.1263	0.12634609	947	sp|P53582|MAP11_HUMAN	yes	yes	0	0	0	0	0		1								40.96	40.96	3	0.00045869	9879	20190821_JH_MUT_Ubi	79.489	29.894	741780	0	741780	0	0	0	0	0	0	0			4354	947	3833	12130	12721	12721				1
SASDSSGKQSTQVMAASMSAFDPLK	2 Oxidation (M);GlyGly (K)	2676.2007	0.2007096	1720	sp|Q92734-4|TFG_HUMAN;sp|Q92734-3|TFG_HUMAN;sp|Q92734-2|TFG_HUMAN;sp|Q92734|TFG_HUMAN	yes	no	0	0	1	2	1							1			32.044	32.044	3	0.0012919	7714	20190902_JH_MUT_Ubi_3	61.736	33.789	697270	0	0	0	0	0	0	697270	0	0			4355	1720	3834	12131	12722	12722		1714	980;981	1
SATLETKPESK	GlyGly (K)	1303.662	0.66195975	567	sp|P15260|INGR1_HUMAN	yes	yes	0	0	1	0	1			1							17.771	17.771	3	0.019517	3241	20190821_JH_WT_Ubi	80.834	6.8829	1283200	0	0	1283200	0	0	0	0	0	0			4356	567	3835	12132	12723	12723		557		0
SATSSSVSNVVITKNVFEETSVK	GlyGly (K)	2526.2813	0.2813264	831	sp|P42566-2|EPS15_HUMAN;sp|P42566|EPS15_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1				37.485	37.485	3	0.00025312	10102	20190902_JH_MUT_Ubi_2	78.917	50.715	11444000	2192600	3206100	0	1392200	1167000	3485800	0	0	0			4357	831	3836	12133;12134;12135;12136;12137	12724;12725;12726;12727;12728;12729;12730	12730		801;802		7
SAVTTVVNPKYEGK	GlyGly (K)	1605.8362	0.83623572	429	sp|P05556|ITB1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	2	25.568	25.568	2;3	8.9801E-05	5025	20190821_JH_WT_Ubi	119.88	77.785	1047700000	57423000	59447000	110700000	60129000	81384000	138670000	79991000	187760000	272200000			4358	429	3837	12138;12139;12140;12141;12142;12143;12144;12145;12146;12147	12731;12732;12733;12734;12735;12736;12737;12738;12739;12740	12737		415;416		10
SAVTTVVNPKYEGK	2 GlyGly (K)	1719.8792	0.87916317	429	sp|P05556|ITB1_HUMAN	yes	yes	0	0	2	0	1	1	1	1	1	1	1			1	26.122	26.122	3	0.015673	5653	20190902_JH_EV_Ubi_3	82.069	50.429	34046000	3535500	4608300	3689100	5165800	6617200	5843300	0	0	4586800			4359	429	3837	12148;12149;12150;12151;12152;12153;12154	12741;12742;12743;12744;12745;12746;12747	12743		415;416		7
SCCSCCPVGCAKCAQGCICK	GlyGly (K)	2535.9336	0.93363488	394	sp|P02795|MT2_HUMAN;sp|P80297|MT1X_HUMAN;sp|P13640-2|MT1G_HUMAN;sp|P13640|MT1G_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		24.907	24.907	3	8.6755E-24	5328	20190902_JH_EV_Ubi_2	164.93	158.97	16538000	1923200	2646300	2426400	1642600	977820	2256700	1801300	2863200	0			4360	394	3838	12155;12156;12157;12158;12159;12160;12161;12162	12748;12749;12750;12751;12752;12753;12754;12755	12749		365		8
SCHAGFGSPAGWDVPVGALIQR	Unmodified	2281.1062	0.10621977	471	sp|P08582|TRFM_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	44.509	44.509	3	4.3924E-07	11851	20190821_JH_WT_Ubi	105.2	71.832	29057000	0	3793800	16075000	0	0	0	0	5341600	3846200			4361	471	3839	12163;12164;12165;12166	12756;12757;12758;12759	12757				4
SCNCLLLKVNQIGSVTESLQACK	GlyGly (K)	2735.3405	0.34045474	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	1	0	1		1				1	1			43.368	43.368	3	3.4224E-22	10990	20190821_JH_MUT_Ubi	150.48	122.84	11442000	0	7473000	0	0	0	3025500	943720	0	0			4362	435	3840	12167;12168;12169	12760;12761;12762	12760		431		3
SCSFTAACCSHFSSVLAQNR	Unmodified	2288.9725	0.97250476	544	sp|P13489|RINI_HUMAN	yes	yes	0	0	0	0	0		1						1	1	34.093	34.093	3	0.00044439	9415	20190902_JH_WT_Ubi_3	79.805	59.068	10712000	0	959200	0	0	0	0	0	6043000	3709800			4363	544	3841	12170;12171;12172	12763;12764;12765	12765				3
SCSGVEFSTSGHAYTDTGK	Unmodified	1989.8374	0.83743429	2202	sp|Q9Y277|VDAC3_HUMAN	yes	yes	0	0	0	0	0		1	1			1		1	1	26.905	26.905	3	0.00011583	7018	20190902_JH_WT_Ubi_3	94.882	76.517	41770000	0	928510	13094000	0	0	1564300	0	16510000	9672600			4364	2202	3842	12173;12174;12175;12176;12177	12766;12767;12768;12769;12770	12770				5
SCVEEPEPEPEAAEGDGDKK	Unmodified	2171.9165	0.91647247	928	sp|P51858|HDGF_HUMAN;sp|P51858-2|HDGF_HUMAN;sp|P51858-3|HDGF_HUMAN	yes	no	0	0	0	0	1			1					1	1	24.523	24.523	3	0.0010672	6516	20190902_JH_WT_Ubi_2	78.021	53.98	16425000	0	0	4912700	0	0	0	0	5348800	6164000			4365	928	3843	12178;12179;12180	12771;12772;12773;12774	12773				4
SDAAVDTSSEITTKDLK	Acetyl (Protein N-term);GlyGly (K)	1935.9273	0.92729515	431	sp|P06454-2|PTMA_HUMAN;sp|P06454|PTMA_HUMAN	yes	no	1	0	1	0	1				1	1	1				34.435	34.435	3	0.0044772	9012	20190902_JH_MUT_Ubi_2	68.972	34.577	4045900	0	0	0	1465200	1411800	1169000	0	0	0			4366	431	3844	12181;12182;12183	12775;12776;12777	12777		420;421		3
SDALETLGFLNHYQMK	Oxidation (M)	1881.8931	0.89309867	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	0	1	0			1			1		1	1	41.702	41.702	3	0.0023263	10686	20190821_JH_WT_Ubi	81.494	46.488	10854000	0	0	4976700	0	0	862600	0	2513100	2502000			4367	559	3845	12184;12185;12186;12187	12778;12779;12780;12781	12779			350	4
SDDELYQKILSK	2 GlyGly (K);Deamidation (NQ)	1666.805	0.80499517	991	sp|P57679|EVC_HUMAN	yes	yes	0	1	2	0	1			1							30.339	30.339	3	0.031341	6383	20190821_JH_WT_Ubi	79.659	36.816	1324300	0	0	1324300	0	0	0	0	0	0			4368	991	3846	12188	12782	12782	953			0
SDDSKSSSPELVTHLK	GlyGly (K)	1842.8959	0.89593544	1180	sp|Q07960|RHG01_HUMAN	yes	yes	0	0	1	0	1		1				1	1		1	24.871	24.871	3	0.00026602	5616	20190902_JH_MUT_Ubi_2	105.53	75.351	3949800	0	632530	0	0	0	1112900	669940	0	1534400			4369	1180	3847	12189;12190;12191;12192	12783;12784;12785;12786	12784		1170		4
SDEFSLADALPEHSPAKTSAVSNTK	Acetyl (Protein N-term);GlyGly (K)	2757.3093	0.30933207	1642	sp|Q8NDC0|MISSL_HUMAN	yes	yes	1	0	1	0	1		1					1			39.145	39.145	3	0.0011563	9269	20190821_JH_MUT_Ubi	62.847	17.151	1094100	0	615230	0	0	0	0	478860	0	0			4370	1642	3848	12193;12194	12787;12788	12787		1643;1644		2
SDFDSNPFADPDLNNPFKDPSVTQVTR	Acetyl (Protein N-term);GlyGly (K)	3178.448	0.44795081	173	sp|O15126|SCAM1_HUMAN;sp|O15126-2|SCAM1_HUMAN	yes	no	1	0	1	0	1	1	1	1	1	1	1	1		1	52.096	52.096	3	6.6432E-17	14711	20190902_JH_MUT_Ubi_2	134.15	99.933	16409000	1758400	3397100	2578900	764140	1042100	2536400	2899400	0	1432500			4371	173	3849	12195;12196;12197;12198;12199;12200;12201;12202	12789;12790;12791;12792;12793;12794;12795;12796;12797	12794		148		9
SDGGYTYDTSDLAAIKQR	GlyGly (K)	2073.9603	0.96032661	958	sp|P54136-2|SYRC_HUMAN;sp|P54136|SYRC_HUMAN	yes	no	0	0	1	0	1									1	33.999	33.999	3	0.0014133	9470	20190902_JH_WT_Ubi_3	78.902	47.5	2724800	0	0	0	0	0	0	0	0	2724800			4372	958	3850	12203	12798	12798		923		1
SDGHVYHTVHKDSGLYK	GlyGly (K)	2055.9763	0.97625145	1184	sp|Q08357|S20A2_HUMAN	yes	yes	0	0	1	0	1						1				19.202	19.202	3	0.00055583	4229	20190902_JH_MUT_Ubi_2	95.067	12.416	494250	0	0	0	0	0	494250	0	0	0			4373	1184	3851	12204	12799	12799		1178		1
SDIDEIVLVGGSTR	Unmodified	1459.7518	0.75183739	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0									1	42.084	42.084	2	0.011903	12188	20190902_JH_WT_Ubi_3	74.611	39.07	16073000	0	0	0	0	0	0	0	0	16073000			4374	517	3852	12205	12800	12800				0
SDKLPEEMGLLQGSSGDK	Oxidation (M);GlyGly (K)	2019.9419	0.94189936	839	sp|P43121|MUC18_HUMAN	yes	yes	0	0	1	1	1	1	1		1	1	1	1	1		30.345	30.345	3	3.9568E-08	6968	20190902_JH_EV_Ubi_3	123.19	86.106	46057000	4664000	2316800	0	8722200	7585300	2845700	5415000	14508000	0			4375	839	3853	12206;12207;12208;12209;12210;12211;12212	12801;12802;12803;12804;12805;12806;12807	12803		812;813	532	7
SDKLPEEMGLLQGSSGDK	GlyGly (K)	2003.947	0.94698474	839	sp|P43121|MUC18_HUMAN	yes	yes	0	0	1	0	1					1				1	35.168	35.168	3	0.0016482	8668	20190902_JH_EV_Ubi_3	76.761	47.949	3403900	0	0	0	0	3403900	0	0	0	0			4376	839	3853	12213;12214	12808;12809	12808		812;813		2
SDKPDMAEIEK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	1433.6344	0.63442437	1050	sp|P62328|TYB4_HUMAN	yes	yes	1	0	1	1	1		1								24.73	24.73	2	0.020334	4103	20190821_JH_MUT_Ubi	95.775	22.846	822820	0	822820	0	0	0	0	0	0	0			4377	1050	3854	12215	12810	12810		1024	647	0
SDLDTSKPLSEK	GlyGly (K)	1432.7046	0.70455285	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1	1	1			1					23.463	23.463	3	0.0062484	3785	20190821_JH_MUT_Ubi	91.313	42.786	4466500	1592800	847340	0	0	2026300	0	0	0	0			4378	970	3855	12216;12217;12218	12811;12812;12813	12813		949;950		3
SDPGLLTNTMDVFVK	Unmodified	1635.8178	0.81780846	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	0	0	0	0			1							48.598	48.598	2	0.023646	13444	20190821_JH_WT_Ubi	60.49	20.572	1035500	0	0	1035500	0	0	0	0	0	0			4379	1107	3856	12219	12814	12814				0
SDPYHATSGALSPAKDCGSQK	GlyGly (K)	2290.0284	0.028422955	600	sp|P17302|CXA1_HUMAN	yes	yes	0	0	1	0	1	1				1					23.532	23.532	3	0.010054	4289	20190821_JH_EV_Ubi	56.819	28.641	6979800	3721400	0	0	0	3258300	0	0	0	0			4380	600	3857	12220;12221	12815;12816	12815		586;587		2
SDQIGLPDFNAGAMENWGLVTYR	Oxidation (M)	2569.1907	0.19073726	564	sp|P15144|AMPN_HUMAN	yes	yes	0	0	0	1	0			1							52.041	52.041	3	0.0049403	14703	20190821_JH_WT_Ubi	58.712	34.817	1905700	0	0	1905700	0	0	0	0	0	0			4381	564	3858	12222	12817	12817			355	1
SDQLLDMSSTFNKTTQNLAQK	Oxidation (M);GlyGly (K)	2499.1911	0.19113119	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	0	1	1	1	1	1	1			1				34.273	34.273	3	2.5098E-45	7741	20190821_JH_WT_Ubi	188.54	140.03	28461000	5294800	3511100	12910000	0	0	6745400	0	0	0			4382	329	3859	12223;12224;12225;12226	12818;12819;12820;12821;12822	12822		307	154	5
SDQLLDMSSTFNKTTQNLAQK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2500.1751	0.17514677	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	1	1	1	1					1					33.972	33.972	3	0.010695	8252	20190902_JH_EV_Ubi_3	63.044	29.913	3434800	0	0	0	0	3434800	0	0	0	0			4383	329	3859	12227	12823	12823	105;106;803;804	307	154	0
SDQLLDMSSTFNKTTQNLAQK	GlyGly (K)	2483.1962	0.19621656	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	0	1	0	1		1	1			1	1	1	1	39.923	39.923	3	7.091E-09	9921	20190821_JH_WT_Ubi	120.74	72.365	24428000	0	2125300	9889800	0	0	2285100	1474000	4046400	4607100			4384	329	3859	12228;12229;12230;12231;12232;12233	12824;12825;12826;12827;12828;12829	12827		307		6
SDQLLDMSSTFNKTTQNLAQKK	3 Deamidation (NQ)	2500.2003	0.20029889	329	sp|O95183|VAMP5_HUMAN	yes	yes	0	3	0	0	2								1		34.419	34.419	3	0.0068176	9943	20190902_JH_WT_Ubi_2	59.975	7.6574	11314000	0	0	0	0	0	0	0	11314000	0			4385	329	3860	12234	12830	12830	105;106;803;804			1
SDQSYVISFVVPNQKR	GlyGly (K)	1980.0065	0.0064889465	248	sp|O60488-2|ACSL4_HUMAN;sp|O60488|ACSL4_HUMAN	yes	no	0	0	1	0	1		1	1			1	1	1	1	38.717	38.717	3	1.3104E-18	9756	20190902_JH_MUT_Ubi_3	159.12	122.93	82372000	0	2951300	29366000	0	0	4186900	5225800	20695000	19948000			4386	248	3861	12235;12236;12237;12238;12239;12240	12831;12832;12833;12834;12835;12836	12833		225		6
SDQVNGVLVLSLLDK	Deamidation (NQ)	1599.872	0.87195253	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN	yes	no	0	1	0	0	0						1				53.823	53.823	2	3.0637E-06	14997	20190902_JH_MUT_Ubi_2	128.76	59.043	1365700	0	0	0	0	0	1365700	0	0	0			4387	1476	3862	12241	12837	12837	466			0
SDSEDICLFTK	Unmodified	1313.5809	0.58093224	310	sp|O76021|RL1D1_HUMAN	yes	yes	0	0	0	0	0								1		37.715	37.715	2	0.0092959	11073	20190902_JH_WT_Ubi_2	89.827	57.412	1525600	0	0	0	0	0	0	0	1525600	0			4388	310	3863	12242	12838	12838				0
SDSFENPVLQQHFR	Unmodified	1702.8063	0.80633258	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	0	0	0	0	1		1							34.776	34.776	3	0.0056038	7882	20190821_JH_WT_Ubi	75.739	53.206	12635000	1884700	0	10750000	0	0	0	0	0	0			4389	541	3864	12243;12244	12839;12840	12840				2
SDSKFAYTGTEMR	Oxidation (M);GlyGly (K)	1621.7042	0.70423527	856	sp|P46736-2|BRCC3_HUMAN;sp|P46736-3|BRCC3_HUMAN;sp|P46736|BRCC3_HUMAN;sp|P46736-5|BRCC3_HUMAN	yes	no	0	0	1	1	1		1				1	1			23.744	23.744	3	2.6671E-05	5046	20190902_JH_MUT_Ubi_3	133.98	96.648	5304000	0	1344600	0	0	0	2195700	1763700	0	0			4390	856	3865	12245;12246;12247	12841;12842;12843	12843		832	541	3
SDVEAIFSK	Unmodified	994.49713	0.49712625	456	sp|P07910-4|HNRPC_HUMAN;sp|P07910-2|HNRPC_HUMAN;sp|P07910|HNRPC_HUMAN;sp|P0DMR1|HNRC4_HUMAN;sp|O60812|HNRC1_HUMAN;sp|B7ZW38|HNRC3_HUMAN;sp|B2RXH8|HNRC2_HUMAN	yes	no	0	0	0	0	0					1					34.495	34.495	2	0.035097	8390	20190902_JH_EV_Ubi_3	68.846	26.559	761920	0	0	0	0	761920	0	0	0	0			4391	456	3866	12248	12844	12844				0
SDVETIFSK	Unmodified	1024.5077	0.50769094	2154	sp|Q9UKM9-2|RALY_HUMAN;sp|Q9UKM9|RALY_HUMAN	yes	no	0	0	0	0	0								1		34.5	34.5	2	0.03363	9991	20190902_JH_WT_Ubi_2	69.598	32.04	1740600	0	0	0	0	0	0	0	1740600	0			4392	2154	3867	12249	12845	12845				1
SDVQIHVPTFTFR	Unmodified	1545.794	0.79397698	294	sp|O75569-3|PRKRA_HUMAN;sp|O75569-2|PRKRA_HUMAN;sp|O75569|PRKRA_HUMAN	yes	no	0	0	0	0	0			1							41.356	41.356	3	0.033462	10506	20190821_JH_WT_Ubi	56.295	31.101	0	0	0	0	0	0	0	0	0	0			4393	294	3868	12250	12846	12846				1
SDYLYSCGDETKLSSPK	GlyGly (K)	2062.9154	0.91535026	1538	sp|Q7Z699|SPRE1_HUMAN	yes	yes	0	0	1	0	1								1		30.656	30.656	3	0.027027	8587	20190902_JH_WT_Ubi_2	50.608	12.984	2597700	0	0	0	0	0	0	0	2597700	0			4394	1538	3869	12251	12847	12847		1527		1
SDYSTGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDR	Acetyl (Protein N-term)	3245.4762	0.47623125	1733	sp|Q92945|FUBP2_HUMAN	yes	yes	1	0	0	0	0								1	1	39.848	39.848	3	1.6523E-65	11827	20190902_JH_WT_Ubi_2	174.61	149.45	3065000	0	0	0	0	0	0	0	1600500	1464500			4395	1733	3870	12252;12253	12848;12849	12848				2
SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPK	Acetyl (Protein N-term)	3136.5048	0.50479699	593	sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN;sp|P16989-3|YBOX3_HUMAN	yes	no	1	0	0	0	0			1		1			1	1	42.022	42.022	3	1.0141E-26	12120	20190902_JH_WT_Ubi_3	135.34	104.46	16420000	0	0	4595200	0	882420	0	0	5106300	5835900			4396	593	3871	12254;12255;12256;12257	12850;12851;12852;12853	12853				4
SEAGLAGAPAR	Unmodified	998.51451	0.51450765	1711	sp|Q92572|AP3S1_HUMAN	yes	yes	0	0	0	0	0									1	22.521	22.521	2	0.0066706	5739	20190902_JH_WT_Ubi_3	93.598	53.539	1656100	0	0	0	0	0	0	0	0	1656100			4397	1711	3872	12258	12854	12854				0
SEASAFGASHHVAYFEASAK	Unmodified	2065.9494	0.949368	506	sp|P10301|RRAS_HUMAN	yes	yes	0	0	0	0	0			1							28.85	28.85	3	0.021336	5929	20190821_JH_WT_Ubi	45.876	11.494	5439400	0	0	5439400	0	0	0	0	0	0			4398	506	3873	12259	12855	12855				1
SEDFSLPAYMDR	Oxidation (M)	1445.6133	0.613295	543	sp|P13073|COX41_HUMAN	yes	yes	0	0	0	1	0			1							37.663	37.663	2	0.013836	8998	20190821_JH_WT_Ubi	69.979	41.802	3313200	0	0	3313200	0	0	0	0	0	0			4399	543	3874	12260	12856	12856			326	0
SEDGVEGDLGETQSR	Unmodified	1577.6805	0.68052294	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0									1	27.591	27.591	2	0.022558	7250	20190902_JH_WT_Ubi_3	61.419	30.807	3409700	0	0	0	0	0	0	0	0	3409700			4400	1190	3875	12261	12857	12857				0
SEDPDQQYLILNTAR	Unmodified	1761.8533	0.85334235	1810	sp|Q96QK1|VPS35_HUMAN	yes	yes	0	0	0	0	0								1		39.917	39.917	2	0.0036514	11789	20190902_JH_WT_Ubi_2	84.169	17.979	3111900	0	0	0	0	0	0	0	3111900	0			4401	1810	3876	12262	12858	12858				1
SEDSIKGLQPEDVNLLVTCR	GlyGly (K)	2386.1798	0.17983822	954	sp|P53794|SC5A3_HUMAN	yes	yes	0	0	1	0	1		1		1		1			1	41.627	41.627	3	0.0031369	12035	20190902_JH_WT_Ubi_3	68.625	31.946	7756200	0	2545200	0	1420400	0	2070400	0	0	1720200			4402	954	3877	12263;12264;12265;12266	12859;12860;12861;12862	12862		913		4
SEDYVDIVQGNR	Unmodified	1393.6474	0.64737232	129	sp|O00469-3|PLOD2_HUMAN;sp|O00469|PLOD2_HUMAN;sp|O00469-2|PLOD2_HUMAN	yes	no	0	0	0	0	0								1		35.16	35.16	2	3.4813E-06	10181	20190902_JH_WT_Ubi_2	145.25	86.267	3130900	0	0	0	0	0	0	0	3130900	0			4403	129	3878	12267	12863	12863				0
SEEETSPLVTHQNPAGPVASAPELESKESVL	GlyGly (K)	3345.6212	0.62122373	837	sp|P43007|SATT_HUMAN;sp|P43007-2|SATT_HUMAN	yes	no	0	0	1	0	1	1			1	1	1	1			39.799	39.799	3	2.8894E-11	9991	20190902_JH_EV_Ubi_2	105.44	67.978	21039000	7668800	0	0	3900600	2631800	3010600	3827000	0	0			4404	837	3879	12268;12269;12270;12271;12272	12864;12865;12866;12867;12868;12869;12870	12865		810		7
SEEMQTVQQEQLLQETQALQQSFLSEK	Oxidation (M)	3195.5242	0.52415222	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	1	0	1		1					1		51.439	51.439	3	4.2104E-44	15416	20190902_JH_WT_Ubi_2	176.77	140.55	7786600	759590	0	4832900	0	0	0	0	2194200	0			4405	1332	3880	12273;12274;12275	12871;12872;12873	12873			832	3
SEEMQTVQQEQLLQETQALQQSFLSEK	Unmodified	3179.5292	0.5292376	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1							52.575	52.575	3	0.0018108	14874	20190821_JH_WT_Ubi	56.986	31.578	3120300	0	0	3120300	0	0	0	0	0	0			4406	1332	3880	12276	12874	12874				1
SEEWADNHLPLTDAELAR	Unmodified	2065.9705	0.97049737	254	sp|O60664-4|PLIN3_HUMAN;sp|O60664-3|PLIN3_HUMAN;sp|O60664|PLIN3_HUMAN;sp|O60664-2|PLIN3_HUMAN	yes	no	0	0	0	0	0								1	1	39.577	39.577	3	7.6167E-05	11287	20190902_JH_WT_Ubi_3	103.13	65.955	9163500	0	0	0	0	0	0	0	5266200	3897300			4407	254	3881	12277;12278	12875;12876	12876				2
SEGDSVGESVHGKPSVVYR	Acetyl (Protein N-term);GlyGly (K)	2144.0134	0.013424818	178	sp|O15258|RER1_HUMAN	yes	yes	1	0	1	0	1		1	1			1	1	1	1	28.59	28.59	3	4.0521E-06	7541	20190902_JH_WT_Ubi_3	110.97	78.449	34678000	0	1341400	8350100	0	0	1867700	1480100	10642000	10997000			4408	178	3882	12279;12280;12281;12282;12283;12284	12877;12878;12879;12880;12881;12882	12882		150		6
SEGTQPEGTYGEQLVPELCNQSESSGEDFFLKSR	GlyGly (K)	3918.749	0.7490198	68	sp|A0AV02-5|S12A8_HUMAN;sp|A0AV02-3|S12A8_HUMAN;sp|A0AV02|S12A8_HUMAN;sp|A0AV02-2|S12A8_HUMAN	yes	no	0	0	1	0	1		1								45.108	45.108	3	0.0032263	11524	20190821_JH_MUT_Ubi	47.439	20.734	1413800	0	1413800	0	0	0	0	0	0	0			4409	68	3883	12285	12883	12883		67		1
SEILDESEDYRDTVVKR	GlyGly (K)	2167.0393	0.039305217	1646	sp|Q8NE01|CNNM3_HUMAN	yes	yes	0	0	1	0	2	1	2		1	1	1				30.212	30.212	3;4	1.5377E-06	6568	20190821_JH_EV_Ubi	123.38	64.199	16583000	3328900	3874000	0	3604800	2522600	3252300	0	0	0			4410	1646	3884	12286;12287;12288;12289;12290;12291	12884;12885;12886;12887;12888;12889	12884		1647		5
SEKDGAATGVDAICIHHLDPK	GlyGly (K)	2347.1227	0.12265769	1703	sp|Q8WXI7|MUC16_HUMAN	yes	yes	0	0	1	0	1								1		29.451	29.451	3	0.012558	8169	20190902_JH_WT_Ubi_2	62.739	23.85	0	0	0	0	0	0	0	0	0	0			4411	1703	3885	12292	12890	12890		1696		1
SEKENNFPPLPK	Acetyl (Protein N-term);GlyGly (K)	1554.7678	0.7678218	1744	sp|Q969E2-3|SCAM4_HUMAN;sp|Q969E2-2|SCAM4_HUMAN;sp|Q969E2|SCAM4_HUMAN	yes	no	1	0	1	0	1	1			1			1	1		35.016	35.016	2	0.012799	8415	20190902_JH_MUT_Ubi_3	81.95	35.132	9802300	3224200	0	0	3015000	0	0	0	3563100	0			4412	1744	3886	12293;12294;12295;12296	12891;12892;12893;12894	12893		1733		1
SEKSVEAAAELSAK	Acetyl (Protein N-term);GlyGly (K)	1574.7788	0.77878042	635	sp|P20962|PTMS_HUMAN	yes	yes	1	0	1	0	1						1				32.884	32.884	2	2.5214E-14	8389	20190902_JH_MUT_Ubi_2	175.48	106.83	2780900	0	0	0	0	0	2780900	0	0	0			4413	635	3887	12297	12895	12895		606		0
SELELTLGKLEQVR	GlyGly (K)	1727.9418	0.94176342	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1	1	1	40.795	40.795	3	7.8581E-11	11430	20190902_JH_MUT_Ubi_2	154.23	68.26	242180000	0	21322000	103080000	3621600	2916800	25726000	12621000	31048000	41846000			4414	1332	3888	12298;12299;12300;12301;12302;12303;12304;12305	12896;12897;12898;12899;12900;12901;12902;12903	12899		1386		8
SELHIENLNMEADPGQYR	Oxidation (M)	2130.964	0.96403178	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	0	0	1	0								1	1	33.401	33.401	3	5.6512E-15	9640	20190902_JH_WT_Ubi_2	154.51	97.642	18600000	0	0	0	0	0	0	0	9361400	9238800			4415	778	3889	12306;12307	12904;12905	12904			495	2
SELHIENLNMEADPGQYR	Unmodified	2114.9691	0.96911716	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	0	0	0	0								1		36.978	36.978	3	0.00048427	10815	20190902_JH_WT_Ubi_2	85.563	39.946	3135900	0	0	0	0	0	0	0	3135900	0			4416	778	3889	12308	12906	12906				1
SELPLDPLPVPTEEGNPLLKHYR	GlyGly (K)	2727.4232	0.42318003	1364	sp|Q15758-3|AAAT_HUMAN;sp|Q15758-2|AAAT_HUMAN;sp|Q15758|AAAT_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1		1	43.37	43.37	4	0.0015019	10935	20190902_JH_EV_Ubi_3	66.325	45.196	141250000	33986000	13416000	16081000	17386000	29381000	17370000	6947100	0	6687200			4417	1364	3890	12309;12310;12311;12312;12313;12314;12315;12316	12907;12908;12909;12910;12911;12912;12913;12914;12915	12910		1405		9
SELVKEVTKSVEEAQLAQEVK	GlyGly (K);2 Deamidation (NQ)	2459.2643	0.26427936	1688	sp|Q8TF46-2|DI3L1_HUMAN;sp|Q8TF46-4|DI3L1_HUMAN;sp|Q8TF46|DI3L1_HUMAN	yes	no	0	2	1	0	2	1	1						1		42.493	42.493	3	9.1488E-05	11122	20190821_JH_EV_Ubi	93.812	34.468	36497000	10072000	10251000	0	0	0	0	0	16174000	0			4418	1688	3891	12317;12318;12319	12916;12917;12918	12916	1164;1165	1681		3
SEMIWNFHCWVESWMTR	2 Oxidation (M)	2329.9707	0.97071384	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	2	0		1	1					1		48.445	48.445	3	0.00029073	13305	20190821_JH_WT_Ubi	98.572	70.407	11109000	0	711740	3588100	0	0	0	0	6809200	0			4419	645	3892	12320;12321;12322	12919;12920;12921	12920			394;395	3
SENAAPGLISELK	Deamidation (NQ)	1328.6824	0.68236084	1954	sp|Q9H4I8|SEHL2_HUMAN	yes	yes	0	1	0	0	0						1				25.187	25.187	3	0.030783	5725	20190902_JH_MUT_Ubi_2	69.229	9.0618	34449000	0	0	0	0	0	34449000	0	0	0			4420	1954	3893	12323	12922	12922	621			1
SENDLKALQSVGQIVGEVLK	GlyGly (K)	2240.2012	0.20122559	1052	sp|P62333|PRS10_HUMAN	yes	yes	0	0	1	0	1		1	1						1	52.188	52.188	3	3.537E-31	14723	20190821_JH_WT_Ubi	179.84	140.96	6069800	0	1505800	2959600	0	0	0	0	0	1604400			4421	1052	3894	12324;12325;12326	12923;12924;12925	12924		1027		3
SENENQEQIEESKEQQEPSSGGSVVPTVQEPK	GlyGly (K)	3640.6613	0.66125065	1789	sp|Q96JJ7|TMX3_HUMAN	yes	yes	0	0	1	0	1					1					30.607	30.607	3	4.6033E-05	7150	20190902_JH_EV_Ubi_3	71.299	46.389	730850	0	0	0	0	730850	0	0	0	0			4422	1789	3895	12327	12926	12926		1756		1
SETAPAAPAAAPPAEK	Acetyl (Protein N-term)	1519.7518	0.75183739	588	sp|P16403|H12_HUMAN	yes	yes	1	0	0	0	0			1							32.312	32.312	2	0.0087683	7005	20190821_JH_WT_Ubi	53.252	10.509	12619000	0	0	12619000	0	0	0	0	0	0			4423	588	3896	12328	12927	12927				1
SETAPAAPAAAPPAEKAPVK	Acetyl (Protein N-term);GlyGly (K)	2029.048	0.04801941	588	sp|P16403|H12_HUMAN	yes	yes	1	0	1	0	1	1	1	1		1	1	1	1	1	30.727	30.727	3	0.00059514	6584	20190821_JH_WT_Ubi	75.682	45.549	77420000	2044100	1880500	12537000	0	2583000	4554200	4640500	25289000	23891000			4424	588	3897	12329;12330;12331;12332;12333;12334;12335;12336	12928;12929;12930;12931;12932;12933;12934;12935	12933		577;578		8
SETAPAAPAAPAPAEKTPVK	GlyGly (K)	2017.048	0.04801941	508	sp|P10412|H14_HUMAN	yes	yes	0	0	1	0	1								1		26.662	26.662	3	0.024049	7195	20190902_JH_WT_Ubi_2	48.477	17.503	3968300	0	0	0	0	0	0	0	3968300	0			4425	508	3898	12337	12936	12936		501		1
SETAPAAPAAPAPAEKTPVK	Acetyl (Protein N-term);GlyGly (K)	2059.0586	0.058584096	508	sp|P10412|H14_HUMAN	yes	yes	1	0	1	0	1								1	1	30.879	30.879	3	0.006303	8735	20190902_JH_WT_Ubi_2	58.997	27.577	28410000	0	0	0	0	0	0	0	15268000	13142000			4426	508	3898	12338;12339	12937;12938	12937		501		2
SETAPLAPTIPAPAEKTPVK	Acetyl (Protein N-term);GlyGly (K)	2173.163	0.16304917	587	sp|P16402|H13_HUMAN	yes	yes	1	0	1	0	1			1						1	39.855	39.855	3	0.013439	9977	20190821_JH_WT_Ubi	50.188	21.837	8691400	0	0	3566100	0	0	0	0	0	5125200			4427	587	3899	12340;12341	12939;12940	12939		576		2
SETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK	Oxidation (M);GlyGly (K);Deamidation (NQ)	3906.8721	0.87209504	147	sp|O14668|TMG1_HUMAN	yes	yes	0	1	1	1	0								1	1	48.014	48.014	3	0.001348	14021	20190902_JH_WT_Ubi_3	48.576	27.109	2554300	0	0	0	0	0	0	0	1217300	1337000			4428	147	3900	12342;12343	12941;12942	12942	56	121	64	2
SETHGSLEEAMLTVVK	Oxidation (M)	1745.8506	0.85056516	550	sp|Q5VT79|AXA81_HUMAN;sp|P13928|ANXA8_HUMAN;sp|P13928-3|ANXA8_HUMAN	yes	no	0	0	0	1	0	1		1						1	30.561	30.561	3	0.0023808	6646	20190821_JH_EV_Ubi	81.185	39.608	2017300	384610	0	1632700	0	0	0	0	0	0			4429	550	3901	12344;12345;12346	12943;12944;12945	12943			335	3
SETITEEELVGLMNK	Oxidation (M)	1707.8237	0.8236817	583	sp|P16152|CBR1_HUMAN	yes	yes	0	0	0	1	0								1		39.249	39.249	2	3.098E-07	11529	20190902_JH_WT_Ubi_2	142.1	82.898	15415000	0	0	0	0	0	0	0	15415000	0			4430	583	3902	12347	12946	12946			366	1
SFANTLVDVCAYAGSGNVLK	Unmodified	2085.0201	0.0200901	1224	sp|Q13200|PSMD2_HUMAN;sp|Q13200-2|PSMD2_HUMAN;sp|Q13200-3|PSMD2_HUMAN	yes	no	0	0	0	0	0									1	46.411	46.411	2	0.0035398	13600	20190902_JH_WT_Ubi_3	68.978	23.545	725750	0	0	0	0	0	0	0	0	725750			4431	1224	3903	12348	12947	12947				1
SFAPILPHLAEEVFQHIPYIK	Unmodified	2448.3206	0.32055286	2027	sp|Q9NSE4|SYIM_HUMAN	yes	yes	0	0	0	0	0								1		53.821	53.821	4	0.026191	16019	20190902_JH_WT_Ubi_2	38.824	23.431	9153300	0	0	0	0	0	0	0	9153300	0			4432	2027	3904	12349	12948	12948				1
SFEAPIKLVFPQDLLEK	GlyGly (K)	2087.1303	0.13029248	1676	sp|Q8TCT9-5|HM13_HUMAN;sp|Q8TCT9|HM13_HUMAN;sp|Q8TCT9-2|HM13_HUMAN;sp|Q8TCT9-4|HM13_HUMAN	yes	no	0	0	1	0	1			1					1	1	50.226	50.226	3	7.4205E-05	14643	20190902_JH_WT_Ubi_3	109.35	65.347	8401100	0	0	5122600	0	0	0	0	943300	2335300			4433	1676	3905	12350;12351;12352	12949;12950;12951	12951		1675		3
SFFHQHYLGGQEPTPSNIR	Unmodified	2214.0606	0.060649782	854	sp|P46379-4|BAG6_HUMAN;sp|P46379-5|BAG6_HUMAN;sp|P46379-2|BAG6_HUMAN;sp|P46379|BAG6_HUMAN;sp|P46379-3|BAG6_HUMAN	yes	no	0	0	0	0	0									1	30.66	30.66	4	0.011325	8298	20190902_JH_WT_Ubi_3	51.487	17.066	8432400	0	0	0	0	0	0	0	0	8432400			4434	854	3906	12353	12952	12952				1
SFGGGTGSGFTSLLMER	Oxidation (M)	1718.7934	0.79338463	88	sp|A6NHL2-2|TBAL3_HUMAN;sp|A6NHL2|TBAL3_HUMAN	yes	no	0	0	0	1	0						1	1	1		42.823	42.823	2	0.00015116	12927	20190902_JH_WT_Ubi_2	107.99	32.607	8631100	0	0	0	0	0	3032000	1549900	4049200	0			4435	88	3907	12354;12355;12356	12953;12954;12955	12955			45	0
SFNVDLLAGKSK	GlyGly (K)	1391.7409	0.74087877	116	sp|O00214|LEG8_HUMAN;sp|O00214-2|LEG8_HUMAN	yes	no	0	0	1	0	1		1					1			33.929	33.929	3	0.0016211	7481	20190821_JH_MUT_Ubi	108.72	34.105	1726500	0	775120	0	0	0	0	951380	0	0			4436	116	3908	12357;12358	12956;12957	12956		103		1
SFQGPVLIGSSHGGVNIEDVAAESPEAIIK	Unmodified	3020.5455	0.54548001	2099	sp|Q9P2R7-2|SUCB1_HUMAN;sp|Q9P2R7|SUCB1_HUMAN	yes	no	0	0	0	0	0								1		46.715	46.715	3	3.8222E-16	14084	20190902_JH_WT_Ubi_2	112.06	83.08	1920100	0	0	0	0	0	0	0	1920100	0			4437	2099	3909	12359	12958	12958				1
SFSLLQEAIIPYIPTLITQLTQK	Unmodified	2616.4778	0.47784137	973	sp|P55060|XPO2_HUMAN;sp|P55060-3|XPO2_HUMAN;sp|P55060-4|XPO2_HUMAN	yes	no	0	0	0	0	0								1		59.174	59.174	3	0.012034	17020	20190902_JH_WT_Ubi_2	48.5	31.783	517510	0	0	0	0	0	0	0	517510	0			4438	973	3910	12360	12959	12959				1
SFSSPTQCSHCTSLMVGLIR	Oxidation (M)	2283.0446	0.044607066	2245	sp|Q9Y5S2|MRCKB_HUMAN	yes	yes	0	0	0	1	0		1								35.212	35.212	3	0.023646	7852	20190821_JH_MUT_Ubi	47.113	17.772	1276000	0	1276000	0	0	0	0	0	0	0			4439	2245	3911	12361	12960	12960			1157	1
SGASGPENFQVGSMPPAQQQITSGQMHR	2 Oxidation (M)	2958.3349	0.33485209	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	2	0	1							1	1	30.655	30.655	3	9.5064E-21	8204	20190902_JH_WT_Ubi_3	126.47	89.727	7605000	701230	0	0	0	0	0	0	3404800	3499000			4440	2230	3912	12362;12363;12364	12961;12962;12963	12963			1152;1153	3
SGDAAIVDMVPGKPMCVESFSDYPPLGR	2 Oxidation (M);GlyGly (K)	3140.4253	0.42530658	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	1	2	1		1				1		1	1	42.334	42.334	3	3.5374E-05	10575	20190821_JH_MUT_Ubi	77.543	58.983	7130800	0	766550	0	0	0	1079300	0	3485400	1799500			4441	1096	3913	12365;12366;12367;12368	12964;12965;12966;12967;12968;12969;12970;12971	12964		1097	676;680	8
SGDAAIVDMVPGKPMCVESFSDYPPLGR	GlyGly (K)	3108.4355	0.43547733	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	1	0	1		1					1			47.955	47.955	3	0.00031562	12518	20190821_JH_MUT_Ubi	68.309	42.901	1338600	0	1338600	0	0	0	0	0	0	0			4442	1096	3913	12369;12370	12972;12973;12974	12972		1097		3
SGDAAIVDMVPGKPMCVESFSDYPPLGR	Oxidation (M);GlyGly (K)	3124.4304	0.43039196	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	1	1	1						1	1	1		44.655	44.655	3	3.5133E-07	11720	20190902_JH_MUT_Ubi_3	95.223	71.015	1954500	0	0	0	0	0	762730	607590	584140	0			4443	1096	3913	12371;12372;12373	12975;12976;12977	12976		1097	676;680	3
SGDFQMSPYAEYPKNPR	Oxidation (M);GlyGly (K)	2115.932	0.93200337	2165	sp|Q9ULI3|HEG1_HUMAN	yes	yes	0	0	1	1	1		1		1	1	1	1		1	28.583	28.583	3	2.0793E-10	6486	20190902_JH_EV_Ubi_2	143.97	93.985	13986000	0	1140400	0	3989700	1658300	2601000	1189100	0	3407100			4444	2165	3914	12374;12375;12376;12377;12378;12379	12978;12979;12980;12981;12982;12983	12978		2022	1133	5
SGDLGDMEPLKGTTPLMQK	2 Oxidation (M);GlyGly (K)	2163.0188	0.018769471	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN	yes	no	0	0	1	2	1	1	1	1	1	1	1	1	1	1	30.911	30.911	3	0.00011666	6351	20190821_JH_MUT_Ubi	92.633	62.09	49395000	5775500	3217400	3242000	5595700	6852500	9289500	5764400	4619400	5038600			4445	257	3915	12380;12381;12382;12383;12384;12385;12386;12387;12388	12984;12985;12986;12987;12988;12989;12990;12991;12992	12987		243	110;111	9
SGDLGDMEPLKGTTPLMQK	Oxidation (M);GlyGly (K)	2147.0239	0.023854849	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN	yes	no	0	0	1	1	1						1	2			34.384	34.384	3	0.00011347	8097	20190902_JH_MUT_Ubi_3	99.044	60.987	5848000	0	0	0	0	0	1521200	4326800	0	0			4446	257	3915	12389;12390;12391	12993;12994;12995	12994		243	110;111	3
SGDTCLCPASGAKPK	Acetyl (Protein N-term);GlyGly (K)	1703.7607	0.76070429	1263	sp|Q13829|BACD2_HUMAN	yes	yes	1	0	1	0	1						1				26.552	26.552	2	0.0010201	6106	20190902_JH_MUT_Ubi_2	105.03	72.814	2643700	0	0	0	0	0	2643700	0	0	0			4447	1263	3916	12392	12996	12996		1328		0
SGDTLLLLHHGDFSAEEVFHR	Unmodified	2379.1608	0.16075776	1876	sp|Q9BTV4|TMM43_HUMAN	yes	yes	0	0	0	0	0			1							39.11	39.11	4	0.029114	9573	20190821_JH_WT_Ubi	36.657	10.74	8362000	0	0	8362000	0	0	0	0	0	0			4448	1876	3917	12393	12997	12997				1
SGEDEQQEQTIAEDLVVTK	Acetyl (Protein N-term)	2160.007	0.007002036	2193	sp|Q9UQ80|PA2G4_HUMAN	yes	yes	1	0	0	0	0	1			1				1	1	47.701	47.701	2;3	4.5677E-18	14413	20190902_JH_WT_Ubi_2	148.36	102.48	6282400	742880	0	0	552960	0	0	0	2395600	2591000			4449	2193	3918	12394;12395;12396;12397	12998;12999;13000;13001	13000				3
SGEEALIIPPDAVAVDCKDPDDVVPVGQR	GlyGly (K)	3174.5503	0.5503074	2205	sp|Q9Y287-2|ITM2B_HUMAN;sp|Q9Y287|ITM2B_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1	1	1	44.706	44.706	3	0.00015811	13491	20190902_JH_WT_Ubi_2	71.678	46.27	27952000	2772300	3868900	0	2205400	2262700	4376100	4059300	3624100	4783200			4450	2205	3919	12398;12399;12400;12401;12402;12403;12404;12405	13002;13003;13004;13005;13006;13007;13008;13009	13008		2058		8
SGEHDFGAAFDGDGDR	Unmodified	1651.6499	0.64989151	788	sp|P36871|PGM1_HUMAN;sp|P36871-3|PGM1_HUMAN;sp|P36871-2|PGM1_HUMAN	yes	no	0	0	0	0	0									1	29.681	29.681	3	0.024229	7993	20190902_JH_WT_Ubi_3	49.066	35.648	2002900	0	0	0	0	0	0	0	0	2002900			4451	788	3920	12406	13010	13010				1
SGETEDTFIADLVVGLCTGQIK	Unmodified	2352.1519	0.15189213	435;483	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN;sp|P13929-3|ENOB_HUMAN;sp|P13929-2|ENOB_HUMAN;sp|P13929|ENOB_HUMAN;sp|P09104|ENOG_HUMAN;sp|P09104-2|ENOG_HUMAN	no	no	0	0	0	0	0	1	1	1			1	1		1	55.958	55.958	3	5.5569E-57	15301	20190902_JH_MUT_Ubi_2	205.65	113.08	36892000	4572000	10377000	16969000	0	0	2099300	1168400	0	1706500			4452	435;483	3921	12407;12408;12409;12410;12411;12412	13011;13012;13013;13014;13015;13016;13017	13013				7
SGETEDTFIADLVVGLCTGQIKTGAPCR	GlyGly (K)	3108.4856	0.48559865	435;483	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN;sp|P13929-3|ENOB_HUMAN;sp|P13929-2|ENOB_HUMAN;sp|P13929|ENOB_HUMAN;sp|P09104|ENOG_HUMAN;sp|P09104-2|ENOG_HUMAN	no	no	0	0	1	0	1		1								52.951	52.951	3	5.4412E-61	14008	20190821_JH_MUT_Ubi	191.73	162.95	2093100	0	2093100	0	0	0	0	0	0	0			4453	435;483	3922	12413	13018	13018		432		1
SGGGGDIHQGFQSLLTEVNK	Unmodified	2043.0021	0.0021318501	772	sp|P35237|SPB6_HUMAN	yes	yes	0	0	0	0	0			1					1	1	39.497	39.497	3	1.1845E-23	9704	20190821_JH_WT_Ubi	159.26	113.54	19844000	0	0	10745000	0	0	0	0	4457800	4640600			4454	772	3923	12414;12415;12416	13019;13020;13021	13019				3
SGGKYVDSEGHLYTVPIR	Acetyl (Protein N-term);GlyGly (K)	2133.0491	0.049082043	1147	sp|Q03135|CAV1_HUMAN	yes	yes	1	0	1	0	1	1	1	1	1	1		1	1	1	35.05	35.05	3	2.0905E-11	8496	20190902_JH_EV_Ubi_3	142.84	102.34	2847000000	246650000	118340000	560650000	211280000	242160000	0	203770000	618250000	645880000			4455	1147	3924	12417;12418;12419;12420;12421;12422;12423;12424	13022;13023;13024;13025;13026;13027;13028;13029	13024		1145		8
SGGKYVDSEGHLYTVPIR	GlyGly (K)	2091.0385	0.038517356	1147	sp|Q03135|CAV1_HUMAN	yes	yes	0	0	1	0	1									1	30.006	30.006	4	0.030699	8089	20190902_JH_WT_Ubi_3	43.454	15.242	3930700	0	0	0	0	0	0	0	0	3930700			4456	1147	3924	12425	13030	13030		1145		1
SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK	Unmodified	3011.2302	0.2302469	1200;1201	sp|Q12906|ILF3_HUMAN;sp|Q12906-7|ILF3_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	24.482	24.482	3	6.0403E-33	6344	20190902_JH_WT_Ubi_3	140.69	127.37	22044000	3245700	1008600	4558800	1701400	1220000	1738500	1331900	3600700	3638400			4457	1200;1201	3925	12426;12427;12428;12429;12430;12431;12432;12433;12434	13031;13032;13033;13034;13035;13036;13037;13038;13039;13040;13041	13041				11
SGGPHGAGVLGLHLEGPFISR	Unmodified	2057.0807	0.080656943	2216	sp|Q9Y303|NAGA_HUMAN;sp|Q9Y303-2|NAGA_HUMAN;sp|Q9Y303-3|NAGA_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			38.942	38.942	4	0.0016109	9293	20190821_JH_MUT_Ubi	66.777	29.183	9091600	0	1799000	3864600	0	0	1955700	1472200	0	0			4458	2216	3926	12435;12436;12437;12438	13042;13043;13044;13045	13042				4
SGGTALHVAAAK	Unmodified	1081.588	0.58800695	165	sp|O14974-5|MYPT1_HUMAN;sp|O14974-4|MYPT1_HUMAN;sp|O14974-3|MYPT1_HUMAN;sp|O14974-2|MYPT1_HUMAN;sp|O14974|MYPT1_HUMAN	yes	no	0	0	0	0	0							1		1	18.383	18.383	2;3	3.3489E-06	3899	20190902_JH_MUT_Ubi_3	145.9	101.15	2163000	0	0	0	0	0	0	1656600	0	506470			4459	165	3927	12439;12440	13046;13047	13046				1
SGIENVNSVEALQETLIR	2 Deamidation (NQ)	1972.9953	0.99531514	1312	sp|Q14995|NR1D2_HUMAN	yes	yes	0	2	0	0	0		1								32.918	32.918	3	0.036145	6906	20190821_JH_MUT_Ubi	47.09	15.434	0	0	0	0	0	0	0	0	0	0			4460	1312	3928	12441	13048	13048	419			1
SGKDGVMEMNSIEPAK	2 Oxidation (M);GlyGly (K)	1837.8186	0.8186131	521	sp|P11169|GTR3_HUMAN	yes	yes	0	0	1	2	1									1	21.543	21.543	3	0.0024353	5489	20190902_JH_WT_Ubi_3	74.89	29.683	1894700	0	0	0	0	0	0	0	0	1894700			4461	521	3929	12442	13049;13050	13050		523	311;312	2
SGLGELILPENEPGSSIMPGK	Deamidation (NQ)	2125.0613	0.061286213	460	sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN	yes	no	0	1	0	0	0			1							47.527	47.527	2	0.010208	13020	20190821_JH_WT_Ubi	63.037	20.828	0	0	0	0	0	0	0	0	0	0			4462	460	3930	12443	13051	13051	169			1
SGNIVAGIANESKK	GlyGly (K)	1500.7896	0.78961988	900	sp|P49915-2|GUAA_HUMAN;sp|P49915|GUAA_HUMAN	yes	no	0	0	1	0	1	1					1	1		1	25.396	25.396	3	0.008852	5493	20190902_JH_MUT_Ubi_3	77.279	39.101	11932000	1414100	0	0	0	0	2198200	2327700	0	5991600			4463	900	3931	12444;12445;12446;12447	13052;13053;13054;13055	13054		866		3
SGPFGQIFRPDNFVFGQSGAGNNWAK	Unmodified	2797.3361	0.33609636	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	0	0	0	1		1	1		1	1	1	1	1	48.028	48.028	3	4.8117E-179	14493	20190902_JH_WT_Ubi_2	281.95	228.63	200540000	0	35312000	71955000	0	615200	13869000	11865000	44324000	22602000			4464	1099;448	3932	12448;12449;12450;12451;12452;12453;12454	13056;13057;13058;13059;13060;13061;13062;13063;13064	13063				9
SGPFGQIFRPDNFVFGQSGAGNNWAK	Deamidation (NQ)	2798.3201	0.32011195	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	1	0	0	1		1	1				1	1	1	48.946	48.946	3	3.0374E-33	13588	20190821_JH_WT_Ubi	165.41	131.15	35421000	0	4177500	14347000	0	0	0	1416700	9989400	5491100			4465	1099;448	3932	12455;12456;12457;12458;12459	13065;13066;13067;13068;13069;13070	13068	163;164;165;836			6
SGPFGQIFRPDNFVFGQSGAGNNWAK	2 Deamidation (NQ)	2799.3041	0.30412753	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	2	0	0	1								1		50.535	50.535	3	1.2745E-26	15119	20190902_JH_WT_Ubi_2	154.95	105.33	2882100	0	0	0	0	0	0	0	2882100	0			4466	1099;448	3932	12460	13071;13072	13071	163;164;165;836			2
SGPFGQLFRPDNFIFGQTGAGNNWAK	Unmodified	2825.3674	0.36739649	1878	sp|Q9BUF5|TBB6_HUMAN	yes	yes	0	0	0	0	1			1			1		1	1	50.477	50.477	3	5.6865E-20	15149	20190902_JH_WT_Ubi_2	144.95	96.054	11112000	0	0	5565900	0	0	0	0	3934500	1611300			4467	1878	3933	12461;12462;12463;12464	13073;13074;13075;13076;13077	13076				5
SGPFGQLFRPDNFIFGQTGAGNNWAK	Deamidation (NQ)	2826.3514	0.35141207	1878	sp|Q9BUF5|TBB6_HUMAN	yes	yes	0	1	0	0	1								1		52.511	52.511	3	0.003932	15620	20190902_JH_WT_Ubi_2	64.845	24.223	1030900	0	0	0	0	0	0	0	1030900	0			4468	1878	3933	12465	13078	13078	596			1
SGQDYKIPIDNMTNEMEQR	2 Oxidation (M);GlyGly (K)	2414.0478	0.047837768	2044	sp|Q9NVH2-4|INT7_HUMAN;sp|Q9NVH2-3|INT7_HUMAN;sp|Q9NVH2-2|INT7_HUMAN;sp|Q9NVH2|INT7_HUMAN	yes	no	0	0	1	2	1		1	1	1	1	1	1	1	1	29.047	29.047	3	6.1106E-14	6606	20190902_JH_MUT_Ubi_3	144.3	117.03	36634000	0	1931200	6683700	2422700	2364200	2680700	4706700	9934300	5910400			4469	2044	3934	12466;12467;12468;12469;12470;12471;12472;12473	13079;13080;13081;13082;13083;13084;13085;13086	13083		1938	1098;1099	8
SGQDYKIPIDNMTNEMEQR	Oxidation (M);GlyGly (K)	2398.0529	0.052923146	2044	sp|Q9NVH2-4|INT7_HUMAN;sp|Q9NVH2-3|INT7_HUMAN;sp|Q9NVH2-2|INT7_HUMAN;sp|Q9NVH2|INT7_HUMAN	yes	no	0	0	1	1	1		1				1	1	1	1	32.018	32.018	3	0.00032107	9088	20190902_JH_WT_Ubi_2	89.353	59.587	6719100	0	593440	0	0	0	1280300	1411300	2044700	1389400			4470	2044	3934	12474;12475;12476;12477;12478	13087;13088;13089;13090;13091	13090		1938	1098;1099	5
SGSHTVAVMNVGAPAAGMNAAVR	2 Oxidation (M)	2199.0525	0.052469636	464	sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN	yes	no	0	0	0	2	0	1		1	1				1		26.642	26.642	3	0.00021497	7193	20190902_JH_WT_Ubi_2	78.418	34.964	14363000	1120500	0	3130300	2467300	0	0	0	7644900	0			4471	464	3935	12479;12480;12481;12482	13092;13093;13094;13095	13095			268;269	4
SGSHTVAVMNVGAPAAGMNAAVR	Oxidation (M)	2183.0576	0.057555014	464	sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN	yes	no	0	0	0	1	0								1	1	29.878	29.878	3	0.0025391	7978	20190902_JH_WT_Ubi_3	62.663	18.864	9019500	0	0	0	0	0	0	0	3927900	5091600			4472	464	3935	12483;12484	13096;13097	13097			268;269	2
SGSHTVAVMNVGAPAAGMNAAVR	Unmodified	2167.0626	0.062640392	464	sp|P08237-2|PFKAM_HUMAN;sp|P08237|PFKAM_HUMAN;sp|P08237-3|PFKAM_HUMAN	yes	no	0	0	0	0	0								1		33.711	33.711	3	0.017301	9679	20190902_JH_WT_Ubi_2	45.069	2.1557	964040	0	0	0	0	0	0	0	964040	0			4473	464	3935	12485	13098	13098				1
SGSMDPSGAHPSVR	Oxidation (M)	1399.615	0.61502633	1175	sp|Q07666-3|KHDR1_HUMAN;sp|Q07666|KHDR1_HUMAN;sp|Q07666-2|KHDR1_HUMAN	yes	no	0	0	0	1	0			1					1	1	17.757	17.757	3	0.010272	3227	20190821_JH_WT_Ubi	71.558	49.53	9452000	0	0	3104200	0	0	0	0	3546300	2801500			4474	1175	3936	12486;12487;12488	13099;13100;13101	13099			730	3
SGTGIAAMSVMRPEQIMK	3 Oxidation (M)	1953.9322	0.93220307	697	sp|P27449|VATL_HUMAN	yes	yes	0	0	0	3	1									1	26.054	26.054	3	0.010614	6792	20190902_JH_WT_Ubi_3	54.402	23.544	2427700	0	0	0	0	0	0	0	0	2427700			4475	697	3937	12489	13102;13103	13102			439;440;441	2
SGTICSSELPGAFEAAGFHLNEHLYNMIIR	Unmodified	3333.5911	0.59106677	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	0	0			1							49.363	49.363	4	0.029135	13756	20190821_JH_WT_Ubi	29.138	9.4011	5585900	0	0	5585900	0	0	0	0	0	0			4476	410	3938	12490	13104	13104				1
SGTLACTGSLVNNTANDRK	Unmodified	1977.9538	0.95380145	10	CON__P15636	yes	yes	0	0	0	0	1		1							1	26.536	26.536	3	0.0065758	4718	20190821_JH_MUT_Ubi	67.415	35.027	7841300	0	1791500	0	0	0	0	0	0	6049800		+	4477	10	3939	12491;12492	13105;13106	13105				2
SGTLACTGSLVNNTANDRK	Deamidation (NQ)	1978.9378	0.93781703	10	CON__P15636	yes	yes	0	1	0	0	1			1							27.342	27.342	3	0.00056307	5480	20190821_JH_WT_Ubi	85.469	53.943	2904500	0	0	2904500	0	0	0	0	0	0		+	4478	10	3939	12493	13107	13107	10			1
SGTVDPQELQKALTTMGFR	Oxidation (M);GlyGly (K)	2208.0845	0.084481271	736	sp|P30626-3|SORCN_HUMAN;sp|P30626-2|SORCN_HUMAN;sp|P30626|SORCN_HUMAN	yes	no	0	0	1	1	1			1			1		1	1	41.321	41.321	3	2.9031E-06	11654	20190902_JH_MUT_Ubi_2	116.96	93.883	12359000	0	0	3683200	0	0	1826600	0	2816900	4032000			4479	736	3940	12494;12495;12496;12497	13108;13109;13110;13111	13108		711	458	4
SGVKIHVSDQELQSANASVDDSR	GlyGly (K)	2555.2212	0.22118576	651	sp|P22314-2|UBA1_HUMAN;sp|P22314|UBA1_HUMAN	yes	no	0	0	1	0	1	1	1				1				29.213	29.213	4	0.007239	5630	20190821_JH_MUT_Ubi	53.454	30.021	5463700	1902700	2005700	0	0	0	1555300	0	0	0			4480	651	3941	12498;12499;12500	13112;13113;13114	13113		627		3
SGVYQHVTGEMMGGHAIR	Oxidation (M)	1944.8934	0.8934498	454	sp|P07858|CATB_HUMAN	yes	yes	0	0	0	1	0			1					1		24.547	24.547	4	0.0087426	4699	20190821_JH_WT_Ubi	59.345	29.982	46658000	0	0	18419000	0	0	0	0	28238000	0			4481	454	3942	12501;12502	13115;13116	13115			255;256	2
SGVYQHVTGEMMGGHAIR	Unmodified	1928.8985	0.89853518	454	sp|P07858|CATB_HUMAN	yes	yes	0	0	0	0	0			1					1	2	28.701	28.701	3;4	0.00010531	7972	20190902_JH_WT_Ubi_2	99.747	62.09	58250000	0	0	33143000	0	0	0	0	4102300	21005000			4482	454	3942	12503;12504;12505;12506	13117;13118;13119;13120	13118				4
SGVYQHVTGEMMGGHAIR	2 Oxidation (M)	1960.8884	0.88836442	454	sp|P07858|CATB_HUMAN	yes	yes	0	0	0	2	0								1		21.846	21.846	3	0.011716	5548	20190902_JH_WT_Ubi_2	57.525	29.556	26286000	0	0	0	0	0	0	0	26286000	0			4483	454	3942	12507	13121	13121			255;256	1
SGYHQSASEHGLVVIAPDTSPR	Unmodified	2307.1244	0.12437225	514	sp|P10768|ESTD_HUMAN	yes	yes	0	0	0	0	0			1		1					29.246	29.246	4	0.027952	6624	20190902_JH_EV_Ubi_3	36.246	3.2514	22042000	0	0	16588000	0	5454300	0	0	0	0			4484	514	3943	12508;12509	13122;13123	13122				2
SHDTTSNTLAQLLAK	Unmodified	1598.8264	0.82639932	1747	sp|Q969G5|CAVN3_HUMAN	yes	yes	0	0	0	0	0			1					1	1	36.513	36.513	3	0.00033547	10708	20190902_JH_WT_Ubi_2	105.99	41.767	17021000	0	0	6768700	0	0	0	0	5721600	4531000			4485	1747	3944	12510;12511;12512	13124;13125;13126	13125				3
SHDTTSNTLAQLLAKAER	GlyGly (K)	2069.0501	0.050144675	1747	sp|Q969G5|CAVN3_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1	1	1	1	38.591	38.591	3;4	7.5773E-27	10485	20190902_JH_MUT_Ubi_2	179.9	119.27	190490000	7410600	13036000	64424000	0	0	18580000	16758000	26903000	43376000			4486	1747	3945	12513;12514;12515;12516;12517;12518;12519	13127;13128;13129;13130;13131;13132;13133	13129		1736		7
SHDTTSNTLAQLLAKAER	GlyGly (K);Deamidation (NQ)	2070.0342	0.03416026	1747	sp|Q969G5|CAVN3_HUMAN	yes	yes	0	1	1	0	1								1	1	39.689	39.689	3	0.0017673	11320	20190902_JH_WT_Ubi_3	94.281	59.849	4646400	0	0	0	0	0	0	0	2076700	2569700			4487	1747	3945	12520;12521	13134;13135	13135	1180	1736		2
SHFEQWGTLTDCVVMR	Oxidation (M)	1980.8822	0.88221641	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1	1	37.313	37.313	3	8.3275E-10	10047	20190902_JH_MUT_Ubi_2	137.73	106.76	32598000	0	2191500	11224000	0	0	4597400	4966600	5252600	4366400			4488	492	3946	12522;12523;12524;12525;12526;12527	13136;13137;13138;13139;13140;13141	13137			287	6
SHFEQWGTLTDCVVMR	Unmodified	1964.8873	0.88730179	492	sp|P09651-2|ROA1_HUMAN;sp|P09651-3|ROA1_HUMAN;sp|P09651|ROA1_HUMAN;sp|Q32P51|RA1L2_HUMAN	yes	no	0	0	0	0	0						1				39.585	39.585	3	0.00021535	10995	20190902_JH_MUT_Ubi_2	104.55	67.556	1207000	0	0	0	0	0	1207000	0	0	0			4489	492	3946	12528	13142	13142				1
SHGKDEECVLEAENK	GlyGly (K)	1857.8163	0.81630491	2133	sp|Q9UHQ4|BAP29_HUMAN;sp|Q9UHQ4-2|BAP29_HUMAN	yes	no	0	0	1	0	1				1						20.728	20.728	3	0.0024062	4328	20190902_JH_EV_Ubi_2	86.498	61.998	297570	0	0	0	297570	0	0	0	0	0			4490	2133	3947	12529	13143	13143		2004		1
SHHAASTTTAPTPAAR	Unmodified	1575.7754	0.7753668	1539	sp|Q7Z6Z7-2|HUWE1_HUMAN;sp|Q7Z6Z7-3|HUWE1_HUMAN;sp|Q7Z6Z7|HUWE1_HUMAN	yes	no	0	0	0	0	0				1	1					15.561	15.561	3	0.00080507	3275	20190902_JH_EV_Ubi_3	91.712	58.52	1583600	0	0	0	803910	779740	0	0	0	0			4491	1539	3948	12530;12531	13144;13145	13145				2
SHLPLALLPQTLLDQK	Unmodified	1786.0353	0.035269879	502	sp|P0DMM9-2|ST1A3_HUMAN;sp|P0DMN0|ST1A4_HUMAN;sp|P0DMM9|ST1A3_HUMAN;sp|P0DMM9-3|ST1A3_HUMAN	yes	no	0	0	0	0	0	1									47.016	47.016	3	0.0043181	12779	20190821_JH_EV_Ubi	72.315	5.8179	955530	955530	0	0	0	0	0	0	0	0			4492	502	3949	12532	13146	13146				1
SHMMDVQGSTQDSAIK	2 Oxidation (M)	1765.7611	0.76109822	546	sp|P13667|PDIA4_HUMAN	yes	yes	0	0	0	2	0			1					1	1	19.301	19.301	3	2.0795E-05	3549	20190821_JH_WT_Ubi	116.79	66.564	8965200	0	0	1830000	0	0	0	0	2500500	4634800			4493	546	3950	12533;12534;12535	13147;13148;13149	13147			332;333	3
SHQPAVATKMPEEMDK	Acetyl (Protein N-term);2 Oxidation (M);GlyGly (K)	1985.8823	0.88227599	1459	sp|Q658P3-2|STEA3_HUMAN	yes	yes	1	0	1	2	1				1						21.084	21.084	3	0.00099799	4402	20190902_JH_EV_Ubi_2	84.859	51.667	1140100	0	0	0	1140100	0	0	0	0	0			4494	1459	3951	12536	13150	13150		1474	889;890	1
SHSPIQDVPKK	GlyGly (K)	1348.7099	0.709913	1889	sp|Q9BWF2|TRAIP_HUMAN	yes	yes	0	0	1	0	1								1		28.778	28.778	3	0.0062908	7903	20190902_JH_WT_Ubi_2	97.472	25.146	37204000	0	0	0	0	0	0	0	37204000	0			4495	1889	3952	12537	13151	13151		1830		1
SHTDQLVLIFAGKILK	GlyGly (K)	1896.0833	0.083282705	2175	sp|Q9UMX0-4|UBQL1_HUMAN;sp|Q9UMX0-2|UBQL1_HUMAN;sp|Q9UMX0|UBQL1_HUMAN	yes	no	0	0	1	0	1		1								45.667	45.667	3	0.00021878	11762	20190821_JH_MUT_Ubi	106.76	56.104	668970	0	668970	0	0	0	0	0	0	0			4496	2175	3953	12538	13152	13152		2030		1
SHTEEDCTEELFDFLHAR	Unmodified	2234.9539	0.95386103	457	sp|P07919|QCR6_HUMAN	yes	yes	0	0	0	0	0			1							43.062	43.062	3	4.9643E-12	11239	20190821_JH_WT_Ubi	146.16	106.92	8063400	0	0	8063400	0	0	0	0	0	0			4497	457	3954	12539	13153	13153				1
SHTILLVQPTK	Acetyl (Protein N-term)	1277.7343	0.73433683	1112	sp|P84090|ERH_HUMAN	yes	yes	1	0	0	0	0	1	1				1				36.39	36.39	2	0.0021274	8937	20190821_JH_EV_Ubi	132.32	105.88	23055000	13744000	4244200	0	0	0	5066800	0	0	0			4498	1112	3955	12540;12541;12542	13154;13155;13156	13154				0
SHTILLVQPTKRPEGR	Acetyl (Protein N-term);GlyGly (K)	1987.0963	0.096307007	1112	sp|P84090|ERH_HUMAN	yes	yes	1	0	1	0	2	1	1	1	1	1	1	1	1	1	28.332	28.332	4	0.0047921	7838	20190902_JH_WT_Ubi_2	70.628	39.309	493750000	35962000	56666000	50297000	36670000	43230000	106280000	57069000	83152000	24417000			4499	1112	3956	12543;12544;12545;12546;12547;12548;12549;12550;12551	13157;13158;13159;13160;13161;13162;13163;13164;13165	13164		1108		9
SHTILLVQPTKRPEGR	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	1988.0803	0.080322592	1112	sp|P84090|ERH_HUMAN	yes	yes	1	1	1	0	2						1				29.046	29.046	3	0.022505	7017	20190902_JH_MUT_Ubi_2	70.438	45.9	1778000	0	0	0	0	0	1778000	0	0	0			4500	1112	3956	12552	13166	13166	978	1108		1
SHVAVENALGLDQQFAGLDLNSSDNQSGGSTASK	Acetyl (Protein N-term);Deamidation (NQ)	3459.6026	0.60261355	134	sp|O00571|DDX3X_HUMAN	yes	yes	1	1	0	0	0			1							49.102	49.102	3	2.4056E-06	13649	20190821_JH_WT_Ubi	88.348	57.806	0	0	0	0	0	0	0	0	0	0			4501	134	3957	12553	13167	13167	760			1
SHVEDGDIAGAPASSPEAPPAEQDPVQLK	Deamidation (NQ)	2912.3676	0.36757523	2092	sp|Q9P2E9-3|RRBP1_HUMAN;sp|Q9P2E9-2|RRBP1_HUMAN;sp|Q9P2E9|RRBP1_HUMAN	yes	no	0	1	0	0	0									1	34.403	34.403	3	0.00037874	9604	20190902_JH_WT_Ubi_3	75.297	37.924	3068000	0	0	0	0	0	0	0	0	3068000			4502	2092	3958	12554	13168	13168	1293			1
SHYADVDPENQNFLLESNLGKK	GlyGly (K)	2631.2565	0.25650864	1809	sp|Q96QD8|S38A2_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			35.171	35.171	3;4	2.073E-68	8565	20190902_JH_EV_Ubi_3	217.33	173.73	55786000	16210000	9719500	0	4528300	3300300	16842000	5185900	0	0			4503	1809	3959	12555;12556;12557;12558;12559;12560	13169;13170;13171;13172;13173;13174;13175;13176	13173		1775;1776		8
SHYADVDPENQNFLLESNLGKKK	2 GlyGly (K)	2873.3944	0.3943991	1809	sp|Q96QD8|S38A2_HUMAN	yes	yes	0	0	2	0	2	1	1								32.357	32.357	4	0.02907	6721	20190821_JH_MUT_Ubi	55.031	33.902	8485600	5956700	2528900	0	0	0	0	0	0	0			4504	1809	3960	12561;12562	13177;13178	13178		1775;1776;1777		2
SIALKQVFNKDK	Acetyl (Protein N-term);2 GlyGly (K);Deamidation (NQ)	1660.8784	0.87843489	1544	sp|Q86TA1|MOB3B_HUMAN	yes	yes	1	1	2	0	2	2		1				1			23.864	23.864	3	0.023581	4921	20190902_JH_MUT_Ubi_3	56.205	21.245	22632000	11568000	0	5993400	0	0	0	5070700	0	0			4505	1544	3961	12563;12564;12565;12566	13179;13180;13181;13182	13181	1108	1537;1538		4
SIANGNPVNSELEAVK	Unmodified	1640.837	0.836964	1654	sp|Q8NFF2-3|NCKX4_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1		1		31.982	31.982	3	0.011297	9110	20190902_JH_WT_Ubi_2	60.918	28.441	68020000	0	3119800	23364000	9919700	7776200	4346400	0	19494000	0			4506	1654	3962	12567;12568;12569;12570;12571;12572;12573	13183;13184;13185;13186;13187;13188;13189	13189				7
SIGEAIQYLHSINIAHR	Unmodified	1921.017	0.016994053	879	sp|P49137|MAPK2_HUMAN;sp|P49137-2|MAPK2_HUMAN	yes	no	0	0	0	0	0			1							39.823	39.823	3	0.016371	9857	20190821_JH_WT_Ubi	53.169	12.892	2160200	0	0	2160200	0	0	0	0	0	0			4507	879	3963	12574	13190	13190				1
SIHFSSPVFTSR	Unmodified	1363.6884	0.68844927	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0						1	1	1	1	33.262	33.262	3	0.0012045	8018	20190902_JH_MUT_Ubi_3	108.35	64.391	19657000	0	0	0	0	0	3266500	2451100	6840000	7099600		+	4508	8;19	3964	12575;12576;12577;12578	13191;13192;13193;13194	13192				4
SIHFSSPVFTSR	Acetyl (Protein N-term)	1405.699	0.69901396	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	1	0	0	0	0						1		1	1	34.23	34.23	3	0.0025319	9989	20190902_JH_WT_Ubi_2	95.094	43.808	9671300	0	0	0	0	0	1476100	0	3770200	4425000		+	4509	8;19	3964	12579;12580;12581	13195;13196;13197	13196				3
SIILPKSLISVVR	GlyGly (K)	1537.9556	0.955563	567	sp|P15260|INGR1_HUMAN	yes	yes	0	0	1	0	1		1	1							43.003	43.003	3	0.002275	11166	20190821_JH_WT_Ubi	99.941	72.175	5760900	0	1343400	4417500	0	0	0	0	0	0			4510	567	3965	12582;12583	13198;13199	13199		558		2
SIITYVVTYYHYFSK	Unmodified	1882.9505	0.9505372	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0			1							51.158	51.158	3	0.023596	14393	20190821_JH_WT_Ubi	51.546	21.003	1710300	0	0	1710300	0	0	0	0	0	0			4511	1129;1130	3966	12584	13200	13200				1
SILDKLHLTQR	GlyGly (K)	1436.81	0.80996139	976	sp|P55103|INHBC_HUMAN	yes	yes	0	0	1	0	1		1								26.426	26.426	3	0.026445	4606	20190821_JH_MUT_Ubi	67.214	24.739	9573900	0	9573900	0	0	0	0	0	0	0			4512	976	3967	12585	13201	13201		964		1
SILDVSMGAQEPSRPLFSLIKVG	Oxidation (M);GlyGly (K)	2573.3523	0.35232328	1149	sp|Q03169|TNAP2_HUMAN	yes	yes	0	0	1	1	2			1							48.186	48.186	3	0.011985	13326	20190821_JH_WT_Ubi	61.087	24.231	1703700	0	0	1703700	0	0	0	0	0	0			4513	1149	3968	12586	13202	13202		1149	718	1
SILKIHAR	Acetyl (Protein N-term);GlyGly (K)	1092.6404	0.64037687	435	sp|P06733|ENOA_HUMAN	yes	yes	1	0	1	0	1		1	1				1	1	1	28.404	28.404	3	0.018592	5824	20190821_JH_WT_Ubi	80.165	25.96	106290000	0	12451000	20236000	0	0	0	23226000	26708000	23664000			4514	435	3969	12587;12588;12589;12590;12591	13203;13204;13205;13206;13207	13205		433		5
SILSSASATVATVGQGISNVIEK	Unmodified	2231.2009	0.20089124	2022	sp|Q9NRY5|F1142_HUMAN	yes	yes	0	0	0	0	0	1									51.997	51.997	3	2.2072E-16	14032	20190821_JH_EV_Ubi	141.79	99.214	2672200	2672200	0	0	0	0	0	0	0	0			4515	2022	3970	12592	13208	13208				1
SILTQPHLYSPVLISQLVQMASQLR	Oxidation (M)	2837.5473	0.54733469	168	sp|O15027-2|SC16A_HUMAN;sp|O15027-4|SC16A_HUMAN;sp|O15027-3|SC16A_HUMAN;sp|O15027|SC16A_HUMAN;sp|O15027-5|SC16A_HUMAN	yes	no	0	0	0	1	0			1							53.603	53.603	3	1.8224E-06	15262	20190821_JH_WT_Ubi	87.652	54.627	3735700	0	0	3735700	0	0	0	0	0	0			4516	168	3971	12593	13209	13209			71	1
SINPDEAVAYGAAVQAAILMGDK	Oxidation (M)	2319.1417	0.1416618	503;766	sp|P0DMV8|HS71A_HUMAN;sp|P0DMV9|HS71B_HUMAN;sp|P0DMV8-2|HS71A_HUMAN;sp|P34931|HS71L_HUMAN	no	no	0	0	0	1	0			1	1					1	52.483	52.483	3	7.3918E-08	15234	20190902_JH_WT_Ubi_3	109.84	78.208	3260300	0	0	1585000	0	0	0	0	0	1675300			4517	503;766	3972	12594;12595;12596	13210;13211;13212	13212			288	3
SINPDEAVAYGAAVQAAILSGDK	Unmodified	2259.1383	0.13829098	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	52.676	52.676	3	7.7214E-57	15254	20190902_JH_WT_Ubi_3	203.53	148.43	41288000	2749300	1659100	14007000	1839100	1721700	1247900	1212700	7443600	9406900			4518	519	3973	12597;12598;12599;12600;12601;12602;12603;12604;12605	13213;13214;13215;13216;13217;13218;13219;13220;13221;13222	13222				10
SINPLGGFVHYGEVTNDFVMLK	Oxidation (M)	2452.2097	0.20968178	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	1	0			1					1	1	47.961	47.961	3	1.8097E-08	13211	20190821_JH_WT_Ubi	112.53	83.667	26412000	0	0	11845000	0	0	0	0	8925800	5640700			4519	804	3974	12606;12607;12608	13223;13224;13225	13223			513	3
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	1097;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN	no	no	0	0	0	0	0						1			1	46.537	46.537	2	0.026694	13480	20190902_JH_MUT_Ubi_2	61.235	27.369	6547900	0	0	0	0	0	3299100	0	0	3248900			4520	1097;1098	3975	12609;12610	13226;13227	13226				1
SISFHPSGDFILVGTQHPTLR	Unmodified	2308.1964	0.19641498	1159	sp|Q05048|CSTF1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1			39.516	39.516	4	0.0036065	9845	20190902_JH_EV_Ubi_2	60.764	26.502	40723000	7527400	4322200	17055000	3855800	2360800	3433500	2168200	0	0			4521	1159	3976	12611;12612;12613;12614;12615;12616;12617	13228;13229;13230;13231;13232;13233;13234	13229				7
SISNKELSELIEQLQK	GlyGly (K)	1972.0477	0.047685059	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1		1								45.622	45.622	3	0.00012256	11721	20190821_JH_MUT_Ubi	116.58	45.062	1062300	0	1062300	0	0	0	0	0	0	0			4522	245	3977	12618	13235	13235		216		0
SISVIDSPGILSGEKQR	GlyGly (K)	1899.0062	0.0061545955	1936	sp|Q9H223|EHD4_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	35.278	35.278	3	0.00011562	9300	20190902_JH_MUT_Ubi_2	107.69	58.378	67997000	6389300	4309800	10216000	5560900	4535500	10818000	8802600	9192300	8172900			4523	1936	3978	12619;12620;12621;12622;12623;12624;12625;12626;12627	13236;13237;13238;13239;13240;13241;13242;13243;13244	13240		1875		9
SITFLCGDAGPLAVAAVLYHK	Unmodified	2202.1507	0.15071034	222	sp|O43813|LANC1_HUMAN	yes	yes	0	0	0	0	0			1					1		52.48	52.48	3	0.00063919	14776	20190821_JH_WT_Ubi	73.918	40.122	5359000	0	0	4692000	0	0	0	0	666970	0			4524	222	3979	12628;12629	13245;13246	13245				2
SIVDYKPNLDLLEQQHQLIQEALIFDNK	Unmodified	3323.7402	0.74015708	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|O43707-3|ACTN4_HUMAN	yes	no	0	0	0	0	1			1					1	1	51.576	51.576	4	0.0020648	14552	20190821_JH_WT_Ubi	55.163	37.542	14539000	0	0	8178800	0	0	0	0	4823700	1537000			4525	214	3980	12630;12631;12632	13247;13248;13249;13250	13247				4
SKDDQVTVIGAGVTLHEALAAAELLK	Unmodified	2648.4385	0.43849575	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	1	1									50.38	50.38	4	0.011904	13686	20190821_JH_EV_Ubi	47.931	20.027	2012500	2012500	0	0	0	0	0	0	0	0			4526	715	3981	12633	13251	13251				1
SKESDEPHHSK	GlyGly (K)	1393.6222	0.6222202	1575	sp|Q8IVM0|CCD50_HUMAN;sp|Q8IVM0-2|CCD50_HUMAN	yes	no	0	0	1	0	1							1		1	4.0552	4.0552	3	0.017783	977	20190902_JH_MUT_Ubi_3	74.698	39.93	1467800	0	0	0	0	0	0	837570	0	630270			4527	1575	3982	12634;12635	13252;13253	13252		1574		2
SKGHYEVTGSDDETGK	GlyGly (K)	1822.7969	0.79694968	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1							1		1	16.756	16.756	3	0.0016029	3592	20190902_JH_MUT_Ubi_3	86.777	59.134	1609500	0	0	0	0	0	0	787920	0	821570			4528	1190	3983	12636;12637	13254;13255	13254		1228		2
SKGPAVGIDLGTTYSCVGVFQHGK	Acetyl (Protein N-term);GlyGly (K)	2633.2908	0.29078565	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	1	0	1	0	1			1					1	1	41.999	41.999	3	5.4503E-18	10769	20190821_JH_WT_Ubi	146.34	120.32	52562000	0	0	31698000	0	0	0	0	10032000	10831000			4529	519	3984	12638;12639;12640	13256;13257;13258	13256		520		3
SKHSEDVNVK	GlyGly (K)	1255.6157	0.61567826	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	1	0	1			1							7.5619	7.5619	3	0.02268	1409	20190821_JH_WT_Ubi	72.531	37.633	3825500	0	0	3825500	0	0	0	0	0	0			4530	255	3985	12641	13259	13259		230;231		1
SKHSEDVNVKVSNAQSVTSER	2 GlyGly (K)	2528.2215	0.22152011	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	2	0	2	1	1		1	1		1			21.785	21.785	4	4.9881E-05	4555	20190902_JH_EV_Ubi_3	90.442	70.366	10650000	3413300	2073700	0	2290100	1063100	0	1810000	0	0			4531	255	3986	12642;12643;12644;12645;12646	13260;13261;13262;13263;13264	13262		230;231		5
SKLLSPYSPQTQETDSAVQK	GlyGly (K)	2320.1547	0.15466933	2087	sp|Q9P265|DIP2B_HUMAN	yes	yes	0	0	1	0	1							2			29.137	29.137	3	8.5028E-05	6717	20190902_JH_MUT_Ubi_3	94.632	56.054	538770	0	0	0	0	0	0	538770	0	0			4532	2087	3987	12647;12648	13265;13266	13265		1965		2
SKLPILIFPEGTCINNTSVMMFKK	2 Oxidation (M);Deamidation (NQ)	2800.4213	0.42133082	1551	sp|Q86UL3|GPAT4_HUMAN	yes	yes	0	1	0	2	2					1					47.02	47.02	3	0.030353	11805	20190902_JH_EV_Ubi_3	40.756	16.208	0	0	0	0	0	0	0	0	0	0			4533	1551	3988	12649	13267	13267	498;499		920;921	1
SKLSELAASTSVQEQNTTDEEK	GlyGly (K)	2508.1827	0.18273457	1399	sp|Q2KHT3-2|CL16A_HUMAN;sp|Q2KHT3|CL16A_HUMAN	yes	no	0	0	1	0	1						1				30.689	30.689	3	9.0609E-16	7610	20190902_JH_MUT_Ubi_2	138.77	106.07	8862200	0	0	0	0	0	8862200	0	0	0			4534	1399	3989	12650	13268	13268		1427		1
SKPVETPPEQNGTLTSQPNNR	GlyGly (K);Deamidation (NQ)	2408.1568	0.15679459	355	sp|O95721|SNP29_HUMAN	yes	yes	0	1	1	0	1			1							25.868	25.868	3	2.3299E-05	5112	20190821_JH_WT_Ubi	104.95	72.17	1331800	0	0	1331800	0	0	0	0	0	0			4535	355	3990	12651	13269	13269	113;114	321		1
SKPVETPPEQNGTLTSQPNNR	GlyGly (K);2 Deamidation (NQ)	2409.1408	0.14081018	355	sp|O95721|SNP29_HUMAN	yes	yes	0	2	1	0	1									1	26.863	26.863	3	0.012342	7035	20190902_JH_WT_Ubi_3	60.134	34.262	870920	0	0	0	0	0	0	0	0	870920			4536	355	3990	12652	13270	13270	113;114	321		1
SKSSSVAVGNDFGFSSPVPGTGDANPAVSEDALFR	GlyGly (K)	3582.6863	0.6862836	2051	sp|Q9NWM3-2|CUED1_HUMAN;sp|Q9NWM3|CUED1_HUMAN	yes	no	0	0	1	0	1	1									45.993	45.993	3	0.00035735	12455	20190821_JH_EV_Ubi	53.819	29.36	934070	934070	0	0	0	0	0	0	0	0			4537	2051	3991	12653	13271	13271		1944		1
SKSTHRIQHNIDYLK	2 GlyGly (K);2 Deamidation (NQ)	2069.029	0.029015303	2003	sp|Q9NQ76-3|MEPE_HUMAN;sp|Q9NQ76|MEPE_HUMAN;sp|Q9NQ76-2|MEPE_HUMAN	yes	no	0	2	2	0	2									1	51.171	51.171	2	0.034712	14950	20190902_JH_WT_Ubi_3	49.466	9.6175	0	0	0	0	0	0	0	0	0	0			4538	2003	3992	12654	13272	13272	644;1269			1
SKTEDHEEAGPLPTK	GlyGly (K)	1751.8326	0.83260691	1898	sp|Q9BXS4|TMM59_HUMAN	yes	yes	0	0	1	0	1				1				1		19.457	19.457	3	0.01328	4029	20190902_JH_EV_Ubi_2	66.568	26.093	3209600	0	0	0	2272200	0	0	0	937420	0			4539	1898	3993	12655;12656	13273;13274	13273		1838;1839		2
SKTEDHEEAGPLPTKVNLAHSEI	2 GlyGly (K)	2729.3257	0.32565083	1898	sp|Q9BXS4|TMM59_HUMAN	yes	yes	0	0	2	0	2	1			1				1	1	30.176	30.176	4	1.2829E-06	6931	20190902_JH_EV_Ubi_2	104.63	70.623	25718000	3330000	0	0	4726900	0	0	0	10652000	7008700			4540	1898	3994	12657;12658;12659;12660	13275;13276;13277;13278	13276		1838;1839		4
SKTSLNPNDLGPLPPGWEER	GlyGly (K)	2320.1448	0.14477334	1808	sp|Q96PU5-9|NED4L_HUMAN;sp|Q96PU5-4|NED4L_HUMAN;sp|Q96PU5-2|NED4L_HUMAN;sp|Q96PU5-6|NED4L_HUMAN;sp|Q96PU5-5|NED4L_HUMAN;sp|Q96PU5-7|NED4L_HUMAN;sp|Q96PU5|NED4L_HUMAN;sp|Q96PU5-3|NED4L_HUMAN	yes	no	0	0	1	0	1	1	1				1				39.114	39.114	3	8.9047E-05	9236	20190821_JH_MUT_Ubi	94.188	63.077	7041300	1338400	2671500	0	0	0	3031400	0	0	0			4541	1808	3995	12661;12662;12663	13279;13280;13281	13280		1771		3
SLAALSQIAYQR	Unmodified	1319.7197	0.7197494	1161	sp|Q05682-5|CALD1_HUMAN;sp|Q05682-3|CALD1_HUMAN	yes	no	0	0	0	0	0								1		38.888	38.888	2	0.036659	11465	20190902_JH_WT_Ubi_2	55.806	23.935	1066600	0	0	0	0	0	0	0	1066600	0			4542	1161	3996	12664	13282	13282				0
SLADELALVDVLEDK	Unmodified	1628.8509	0.85088273	442	sp|P07195|LDHB_HUMAN	yes	yes	0	0	0	0	0			1						1	54.607	54.607	3	1.7969E-05	15660	20190821_JH_WT_Ubi	122.1	40.531	5060500	0	0	3045300	0	0	0	0	0	2015300			4543	442	3997	12665;12666	13283;13284	13283				2
SLAGSSGPGASSGTSGDHGELVVR	Unmodified	2184.0407	0.040702201	717	sp|P29692|EF1D_HUMAN;sp|P29692-2|EF1D_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1	1	1	1	27.504	27.504	3	3.7541E-08	5600	20190821_JH_WT_Ubi	106	68.913	128080000	10347000	0	27995000	8575700	9168400	7645800	4595100	29330000	30426000			4544	717	3998	12667;12668;12669;12670;12671;12672;12673;12674	13285;13286;13287;13288;13289;13290;13291;13292;13293;13294	13291				10
SLAHLETLSHSFILSLK	Unmodified	1895.0516	0.051648225	74	sp|A2RRP1-2|NBAS_HUMAN;sp|A2RRP1|NBAS_HUMAN	yes	no	0	0	0	0	0			1							42.907	42.907	4	0.0075303	11159	20190821_JH_WT_Ubi	61.186	42.128	3083500	0	0	3083500	0	0	0	0	0	0			4545	74	3999	12675	13295	13295				1
SLANVILGGYGTTSTAGGK	Unmodified	1765.921	0.92102798	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1	1		1	1	42.488	42.488	3	3.0961E-24	10726	20190902_JH_EV_Ubi_2	169.58	107.11	17822000	3127000	0	4034000	2650200	2561200	799450	0	2087000	2563400			4546	1236	4000	12676;12677;12678;12679;12680;12681;12682	13296;13297;13298;13299;13300;13301;13302	13297				7
SLASYGLKDGDVVILR	GlyGly (K)	1818.984	0.98396259	1446	sp|Q5TDH0-3|DDI2_HUMAN;sp|Q5TDH0|DDI2_HUMAN;sp|Q5TDH0-2|DDI2_HUMAN	yes	no	0	0	1	0	1							1			38.391	38.391	3	5.2707E-06	9837	20190902_JH_MUT_Ubi_3	121.92	91.594	967020	0	0	0	0	0	0	967020	0	0			4547	1446	4001	12683	13303	13303		1463		1
SLAYLTAATHGLDEEAESLK	Unmodified	2118.0481	0.04807899	950	sp|P53621|COPA_HUMAN;sp|P53621-2|COPA_HUMAN	yes	no	0	0	0	0	0			1							41.991	41.991	3	0.0047131	10792	20190821_JH_WT_Ubi	61.648	26.694	4811500	0	0	4811500	0	0	0	0	0	0			4548	950	4002	12684	13304	13304				1
SLDLFNCEVTNLNDYR	Unmodified	1971.8996	0.89964061	806	sp|P39687|AN32A_HUMAN;sp|Q92688-2|AN32B_HUMAN;sp|Q92688|AN32B_HUMAN	yes	no	0	0	0	0	0	1									47.436	47.436	2	0.0035547	12867	20190821_JH_EV_Ubi	84.734	56.767	2269500	2269500	0	0	0	0	0	0	0	0			4549	806	4003	12685	13305	13305				0
SLEAASEKYSEK	GlyGly (K)	1454.6889	0.68890278	1092;1093	sp|P67936|TPM4_HUMAN;sp|P67936-2|TPM4_HUMAN	no	no	0	0	1	0	1						1				21.098	21.098	3	0.025987	4695	20190902_JH_MUT_Ubi_2	65.232	23.201	900200	0	0	0	0	0	900200	0	0	0			4550	1092;1093	4004	12686	13306	13306		1090		1
SLEQKNNPDYNWNVR	3 Deamidation (NQ)	1878.8384	0.83842057	146	sp|O14647|CHD2_HUMAN	yes	yes	0	3	0	0	1									1	51.077	51.077	2	0.036	14929	20190902_JH_WT_Ubi_3	43.604	15.399	0	0	0	0	0	0	0	0	0	0			4551	146	4005	12687	13307	13307	52;53;54;55			1
SLESLHSFVAAATK	Unmodified	1459.7671	0.76709352	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	36.315	36.315	3	0.00011709	8522	20190821_JH_WT_Ubi	115.12	67.41	75985000	0	0	30033000	0	0	7909700	0	19522000	18521000			4552	1332	4006	12688;12689;12690;12691	13308;13309;13310;13311	13309				4
SLESPANSSSSLHSLGSVSLCTR	Unmodified	2375.1387	0.13870169	1600	sp|Q8IZW8|TENS4_HUMAN	yes	yes	0	0	0	0	0	1	1								35.68	35.68	3	0.0051358	8609	20190821_JH_EV_Ubi	56.488	23.977	2741500	1813400	928140	0	0	0	0	0	0	0			4553	1600	4007	12692;12693	13312;13313	13312				2
SLETKIAKWNLQSR	Deamidation (NQ)	1673.9101	0.91006937	2166	sp|Q9ULJ1-5|ODF2L_HUMAN;sp|Q9ULJ1-6|ODF2L_HUMAN;sp|Q9ULJ1-3|ODF2L_HUMAN;sp|Q9ULJ1-2|ODF2L_HUMAN;sp|Q9ULJ1|ODF2L_HUMAN;sp|Q9ULJ1-4|ODF2L_HUMAN	yes	no	0	1	0	0	2						1				36.169	36.169	2	0.031233	9744	20190902_JH_MUT_Ubi_2	55.806	6.8082	0	0	0	0	0	0	0	0	0	0			4554	2166	4008	12694	13314	13314	691;1308			1
SLEVTKLQPGGSLNANTSNTIASTSATTPVK	GlyGly (K)	3200.6525	0.65246428	328	sp|O95171-3|SCEL_HUMAN;sp|O95171-2|SCEL_HUMAN;sp|O95171|SCEL_HUMAN	yes	no	0	0	1	0	1		1				1	1			36.571	36.571	3	1.4045E-11	9198	20190902_JH_MUT_Ubi_3	108.39	87.223	5544900	0	2158000	0	0	0	1654200	1732700	0	0			4555	328	4009	12695;12696;12697	13315;13316;13317;13318	13317		304		4
SLFGHTVGGAAGVVSR	Unmodified	1513.8001	0.80012499	1510	sp|Q709C8-4|VP13C_HUMAN;sp|Q709C8-2|VP13C_HUMAN;sp|Q709C8-3|VP13C_HUMAN;sp|Q709C8|VP13C_HUMAN	yes	no	0	0	0	0	0									1	31.569	31.569	3	0.011248	8625	20190902_JH_WT_Ubi_3	60.968	32.065	2725600	0	0	0	0	0	0	0	0	2725600			4556	1510	4010	12698	13319	13319				1
SLFVLPHTDHLVGYIIR	Unmodified	1979.0993	0.09926712	1527	sp|Q7Z392-4|TPC11_HUMAN;sp|Q7Z392-3|TPC11_HUMAN;sp|Q7Z392|TPC11_HUMAN	yes	no	0	0	0	0	0			1							44.726	44.726	4	0.02677	11931	20190821_JH_WT_Ubi	42.242	25.163	4013600	0	0	4013600	0	0	0	0	0	0			4557	1527	4011	12699	13320	13320				1
SLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTR	Unmodified	3356.8304	0.83036907	1547	sp|Q86U38|NOP9_HUMAN	yes	yes	0	0	0	0	0		1	1			1				54.159	54.159	3	0.00050802	14464	20190821_JH_MUT_Ubi	51.094	33.736	7204100	0	3874700	2543500	0	0	785900	0	0	0			4558	1547	4012	12700;12701;12702	13321;13322;13323	13321				3
SLGGLISAVGVGSTGGGCGGPGPGALPPANTYASIDFLSHHLK	Unmodified	4046.032	0.031998776	2232	sp|Q9Y4H2|IRS2_HUMAN	yes	yes	0	0	0	0	0		1	1						1	49.847	49.847	4	2.316E-06	13912	20190821_JH_WT_Ubi	58.058	38.94	30069000	0	4548500	23577000	0	0	0	0	0	1944000			4559	2232	4013	12703;12704;12705	13324;13325;13326;13327	13326				4
SLGNVIHPDVVVNGGQDQSK	Deamidation (NQ)	2063.0283	0.028346601	2027	sp|Q9NSE4|SYIM_HUMAN	yes	yes	0	1	0	0	0								1	1	34.395	34.395	3	0.0001727	9543	20190902_JH_WT_Ubi_3	93.115	43.127	9681500	0	0	0	0	0	0	0	3921800	5759600			4560	2027	4014	12706;12707	13328;13329	13329	646;1275;1276			2
SLGSADELFKHYEAVHDAGNDSGHGGESNLALK	GlyGly (K)	3538.6349	0.63491674	1326	sp|Q15075|EEA1_HUMAN	yes	yes	0	0	1	0	1			1						1	34.721	34.721	4	0.00017492	9682	20190902_JH_WT_Ubi_3	60.527	36.961	8080600	0	0	5019600	0	0	0	0	0	3061000			4561	1326	4015	12708;12709	13330;13331	13331		1382		2
SLGYDLPMVEEGEPDPEFEAILDTVDPNR	Oxidation (M)	3262.4864	0.48636973	1262	sp|Q13813-3|SPTN1_HUMAN;sp|Q13813|SPTN1_HUMAN;sp|Q13813-2|SPTN1_HUMAN	yes	no	0	0	0	1	0								1		55.988	55.988	3	0.00030741	16504	20190902_JH_WT_Ubi_2	64.707	38.151	622800	0	0	0	0	0	0	0	622800	0			4562	1262	4016	12710	13332	13332			785	1
SLHDALCVLAQTVK	Unmodified	1553.8236	0.82356254	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	0	0			1							42.923	42.923	3	0.0032321	11177	20190821_JH_WT_Ubi	83.499	40.944	16773000	0	0	16773000	0	0	0	0	0	0			4563	1105	4017	12711	13333	13333				1
SLHDALCVVK	Unmodified	1140.5961	0.59612879	607	sp|P17987|TCPA_HUMAN	yes	yes	0	0	0	0	0		1	1							28.894	28.894	3	0.016266	5924	20190821_JH_WT_Ubi	72.325	24.619	3170900	0	484930	2685900	0	0	0	0	0	0			4564	607	4018	12712;12713	13334;13335	13335				2
SLHLVIQNDQGHTSVLHSYPESVGR	Unmodified	2772.3943	0.39433952	1561	sp|Q86X10-4|RLGPB_HUMAN;sp|Q86X10-3|RLGPB_HUMAN;sp|Q86X10|RLGPB_HUMAN	yes	no	0	0	0	0	0	1				1					32.161	32.161	4	0.012946	7575	20190902_JH_EV_Ubi_3	43.611	21.493	4042300	2952000	0	0	0	1090300	0	0	0	0			4565	1561	4019	12714;12715	13336;13337	13337				2
SLHTLFGDELCK	Unmodified	1418.6864	0.68640036	5	CON__P02769	yes	yes	0	0	0	0	0	1		1			1	1			35.184	35.184	3	1.2449E-05	9287	20190902_JH_MUT_Ubi_2	136.81	98.024	14918000	1086800	0	10753000	0	0	1412100	1665600	0	0		+	4566	5	4020	12716;12717;12718;12719	13338;13339;13340;13341	13339				4
SLIGVEYKPVSATGAEDK	Unmodified	1862.9626	0.96255845	453	sp|P07814|SYEP_HUMAN	yes	yes	0	0	0	0	1							1	1	1	32.381	32.381	3	0.0039182	7768	20190902_JH_MUT_Ubi_3	83.418	37.544	4754900	0	0	0	0	0	0	1511800	0	3243200			4567	453	4021	12720;12721;12722	13342;13343;13344	13342				3
SLISVIHLITAAR	Unmodified	1392.8453	0.84528426	149	sp|O14735-3|CDIPT_HUMAN;sp|O14735|CDIPT_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	46.685	46.685	3	0.00037101	13655	20190902_JH_WT_Ubi_3	112.64	95.528	24933000	0	1090300	11221000	0	0	1050600	739240	3175000	7657000			4568	149	4022	12723;12724;12725;12726;12727;12728	13345;13346;13347;13348;13349;13350	13350				6
SLKEAEVLLK	GlyGly (K)	1242.7184	0.71835242	1725	sp|Q92817|EVPL_HUMAN	yes	yes	0	0	1	0	1	1			1	1					30.667	30.667	3	0.0040131	7132	20190902_JH_EV_Ubi_2	102.95	54.864	3374500	1009000	0	0	1269400	1096100	0	0	0	0			4569	1725	4023	12729;12730;12731	13351;13352;13353	13352		1718		3
SLKESEALPEK	GlyGly (K)	1343.6933	0.69325988	1476	sp|Q6NZI2|CAVN1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	22.501	22.501	3	0.00040491	4229	20190821_JH_WT_Ubi	132.03	58.142	170380000	5637200	6183100	23860000	9326800	14275000	9174500	13031000	44501000	44397000			4570	1476	4024	12732;12733;12734;12735;12736;12737;12738;12739;12740	13354;13355;13356;13357;13358;13359;13360;13361;13362;13363	13360		1491		10
SLKFNLMSDAPGDSPR	Oxidation (M);GlyGly (K)	1863.8785	0.87851124	1181	sp|Q08174|PCDH1_HUMAN;sp|Q08174-2|PCDH1_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	31.934	31.934	3	9.864E-05	7515	20190902_JH_MUT_Ubi_3	110.38	81.751	19108000	1333700	957600	2704800	1832400	1139200	1313600	2020700	3815400	3990200			4571	1181	4025	12741;12742;12743;12744;12745;12746;12747;12748;12749	13364;13365;13366;13367;13368;13369;13370;13371;13372	13369		1173	738	9
SLKSTQDEINQAR	GlyGly (K)	1602.7962	0.79616182	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN;sp|Q9UBC2-3|EP15R_HUMAN;sp|Q9UBC2-4|EP15R_HUMAN	yes	no	0	0	1	0	1						1				22.04	22.04	3	0.014594	4892	20190902_JH_MUT_Ubi_2	75.102	25.619	0	0	0	0	0	0	0	0	0	0			4572	2101	4026	12750	13373	13373		1978		1
SLLEGQEDHYNNLSASK	Unmodified	1903.8912	0.89118442	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0	1	1	1		1	1	1		1	29.459	29.459	3	0.00058276	7868	20190902_JH_WT_Ubi_3	90.259	20.657	743370000	55791000	36578000	209320000	0	122950000	54892000	41751000	0	222090000		+	4573	7;477	4027	12751;12752;12753;12754;12755;12756;12757	13374;13375;13376;13377;13378;13379;13380	13380				7
SLLEGQEDHYNNLSASK	Deamidation (NQ)	1904.8752	0.8752	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	0	0	0								1	1	30.482	30.482	3	0.017678	8191	20190902_JH_WT_Ubi_3	63.374	22.282	117690000	0	0	0	0	0	0	0	58963000	58722000		+	4574	7;477	4027	12758;12759	13381;13382	13382	5;715			2
SLLEGQEDHYNNLSASKVL	GlyGly (K)	2230.0866	0.086589761	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	36.905	36.905	3	1.4363E-48	9929	20190902_JH_MUT_Ubi_2	197.75	140.85	194340000	13592000	40846000	13272000	9361000	10160000	47261000	44106000	7566400	8177800		+	4575	7;477	4028	12760;12761;12762;12763;12764;12765;12766;12767;12768	13383;13384;13385;13386;13387;13388;13389;13390;13391	13387		18		9
SLLEGQEDHYNNLSASKVL	GlyGly (K);Deamidation (NQ)	2231.0706	0.070605346	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	1	0	1						1	1			38.121	38.121	3	4.1089E-29	9571	20190902_JH_MUT_Ubi_3	175.7	116.06	25675000	0	0	0	0	0	14654000	11021000	0	0		+	4576	7;477	4028	12769;12770	13392;13393	13393	5;715	18		2
SLLEKFLIPNASQAESK	GlyGly (K)	1988.0579	0.057855815	1079	sp|P63104-2|1433Z_HUMAN	yes	yes	0	0	1	0	1	1			1	1					42.59	42.59	3	0.001249	11307	20190821_JH_EV_Ubi	85.563	40.638	12903000	6418000	0	0	2814900	3669800	0	0	0	0			4577	1079	4029	12771;12772;12773	13394;13395;13396	13394		1072		3
SLLHGDFHAFSAGPGLFSYIR	Unmodified	2291.1487	0.14873651	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	0	0	0								1		46.246	46.246	4	0.010399	13918	20190902_JH_WT_Ubi_2	50.358	15.746	2844100	0	0	0	0	0	0	0	2844100	0			4578	462;463	4030	12774	13397	13397				1
SLLLTTIPQIGSTEWSETLHNLK	Unmodified	2580.3799	0.37991824	1215	sp|Q13126-4|MTAP_HUMAN;sp|Q13126|MTAP_HUMAN;sp|Q13126-3|MTAP_HUMAN;sp|Q13126-2|MTAP_HUMAN	yes	no	0	0	0	0	0			1							50.983	50.983	3	0.004042	14350	20190821_JH_WT_Ubi	58.693	29.928	1944800	0	0	1944800	0	0	0	0	0	0			4579	1215	4031	12775	13398	13398				1
SLLSHEFQDETDTEEETLYSSKH	GlyGly (K)	2838.2468	0.24679139	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		2		1	35.931	35.931	3;4	4.737E-05	8954	20190902_JH_MUT_Ubi_3	84.975	68.385	66378000	16211000	6924500	21889000	4886300	6455600	0	6723200	0	3288400			4580	308	4032	12776;12777;12778;12779;12780;12781;12782;12783	13399;13400;13401;13402;13403;13404;13405;13406	13403		293		8
SLLVIPNTLAVNAAQDSTDLVAK	Unmodified	2352.29	0.2900406	607	sp|P17987|TCPA_HUMAN	yes	yes	0	0	0	0	0			1				1		1	50.892	50.892	3	3.3312E-07	14374	20190821_JH_WT_Ubi	102.67	75.889	4677700	0	0	2314500	0	0	0	557300	0	1805900			4581	607	4033	12784;12785;12786	13407;13408;13409;13410	13408				4
SLLVVHFWAPWAPQCAQMNEVMAELAK	2 Oxidation (M)	3157.5188	0.51875345	309	sp|O76003|GLRX3_HUMAN	yes	yes	0	0	0	2	0			1							50.637	50.637	3	0.012667	14223	20190821_JH_WT_Ubi	53.281	22.399	0	0	0	0	0	0	0	0	0	0			4582	309	4034	12787	13411	13411			143;144	1
SLMDSDDDALLKSQHINTLGQFWTTK	Oxidation (M);GlyGly (K)	3093.4713	0.47132879	306	sp|O75911|DHRS3_HUMAN	yes	yes	0	0	1	1	1			1							42.612	42.612	4	0.0013937	11022	20190821_JH_WT_Ubi	61.04	38.152	12777000	0	0	12777000	0	0	0	0	0	0			4583	306	4035	12788	13412	13412		291	142	1
SLNILTAFQK	Unmodified	1133.6445	0.64445919	719	sp|P30040|ERP29_HUMAN	yes	yes	0	0	0	0	0			1							43.849	43.849	2	0.012562	11523	20190821_JH_WT_Ubi	89.029	18.213	5921600	0	0	5921600	0	0	0	0	0	0			4584	719	4036	12789	13413	13413				0
SLNRVHLLGR	Unmodified	1163.6887	0.68872404	1158	sp|Q04837|SSBP_HUMAN	yes	yes	0	0	0	0	1	1									24.449	24.449	3	0.023319	4454	20190821_JH_EV_Ubi	101.97	66.529	1354900	1354900	0	0	0	0	0	0	0	0			4585	1158	4037	12790	13414	13414				0
SLNYCGHIYTPISCK	Unmodified	1811.8335	0.8334753	1739	sp|Q93009-3|UBP7_HUMAN;sp|Q93009|UBP7_HUMAN	yes	no	0	0	0	0	0		1				1	1			32.357	32.357	3	0.020954	7669	20190902_JH_MUT_Ubi_3	54.094	16.543	5569300	0	1084100	0	0	0	2774300	1710900	0	0			4586	1739	4038	12791;12792;12793	13415;13416;13417	13417				3
SLPYGTAMEKAQLKPPATSDA	Oxidation (M);GlyGly (K)	2305.126	0.12601173	473	sp|P08648|ITA5_HUMAN	yes	yes	0	0	1	1	2									1	31.459	31.459	3	0.010606	8560	20190902_JH_WT_Ubi_3	63.639	25.263	5260500	0	0	0	0	0	0	0	0	5260500			4587	473	4039	12794	13418	13418		477	276	1
SLQDIIAILGMDELSEEDK	Oxidation (M)	2134.0351	0.035131042	433	sp|P06576|ATPB_HUMAN	yes	yes	0	0	0	1	0	1		1			1	1	1	1	56.095	56.095	3	7.2847E-06	15916	20190902_JH_WT_Ubi_3	110.64	66.039	8643700	664000	0	4147600	0	0	342920	0	1757900	1731300			4588	433	4040	12795;12796;12797;12798;12799;12800	13419;13420;13421;13422;13423;13424	13424			232	6
SLQEEHVAVAQLR	Unmodified	1478.7841	0.78414057	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0		1					1			28.397	28.397	3	0.016372	6375	20190902_JH_MUT_Ubi_3	64.224	24.288	5447700	0	2531500	0	0	0	0	2916200	0	0			4589	1332	4041	12801;12802	13425;13426	13426				2
SLQELFLAHILSPWGAEVK	Unmodified	2137.1572	0.15717593	496	sp|P09874|PARP1_HUMAN	yes	yes	0	0	0	0	0		1	1				1	1		54.051	54.051	3	2.0606E-05	15448	20190821_JH_WT_Ubi	107.69	61.827	17925000	0	5832600	4265100	0	0	0	872690	6954800	0			4590	496	4042	12803;12804;12805;12806	13427;13428;13429;13430	13429				4
SLQIMRQIMAGKGCEESSVMELLK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	2884.3803	0.38027064	66	sp|A0A1B0GTZ2|CC196_HUMAN	yes	yes	0	1	1	2	2	1									35.858	35.858	3	0.0046143	8686	20190821_JH_EV_Ubi	59.339	17.889	3566400	3566400	0	0	0	0	0	0	0	0			4591	66	4043	12807	13431	13431	733	64	38;39	1
SLQKIGPILDNSTLQSEVK	GlyGly (K)	2183.1798	0.17976186	731	sp|P30153|2AAA_HUMAN	yes	yes	0	0	1	0	1	1	1	1			1	1	1		37.686	37.686	3	7.1964E-08	9356	20190821_JH_EV_Ubi	123	92.776	22491000	1729400	3860600	7181700	0	0	3295800	3443800	2979500	0			4592	731	4044	12808;12809;12810;12811;12812;12813	13432;13433;13434;13435;13436;13437	13432		710		6
SLSALGNVISALAEGSTYVPYR	Unmodified	2267.1798	0.17976186	758	sp|P33176|KINH_HUMAN	yes	yes	0	0	0	0	0		1				1				55.121	55.121	3	2.0976E-22	14727	20190821_JH_MUT_Ubi	155.08	102.72	4689800	0	3630100	0	0	0	1059700	0	0	0			4593	758	4045	12814;12815	13438;13439	13438				2
SLSDSESDDSKSK	GlyGly (K)	1497.6431	0.6430748	1222	sp|Q13185|CBX3_HUMAN	yes	yes	0	0	1	0	1	1	1			1					12.62	12.62	3	0.0035306	2052	20190821_JH_MUT_Ubi	93.649	58.954	4286800	1319700	1017400	0	0	1949700	0	0	0	0			4594	1222	4046	12816;12817;12818	13440;13441;13442	13442		1287		3
SLSETFLPNGINGIKDAR	GlyGly (K);2 Deamidation (NQ)	2047.0222	0.02219859	1656	sp|Q8NFT2-3|STEA2_HUMAN;sp|Q8NFT2-2|STEA2_HUMAN;sp|Q8NFT2|STEA2_HUMAN	yes	no	0	2	1	0	1								1	1	40.365	40.365	3	0.00024969	11545	20190902_JH_WT_Ubi_3	100.68	65.593	8687800	0	0	0	0	0	0	0	4452000	4235800			4595	1656	4047	12819;12820	13443;13444	13444	539;540	1657		2
SLSHLPLHSSK	Unmodified	1204.6564	0.65642086	2033	sp|Q9NUM4|T106B_HUMAN	yes	yes	0	0	0	0	0			1							20.023	20.023	3	0.030257	3691	20190821_JH_WT_Ubi	57.149	29.82	1646000	0	0	1646000	0	0	0	0	0	0			4596	2033	4048	12821	13445	13445				1
SLSHLPLHSSKEDAYDGVTSENMR	Oxidation (M);GlyGly (K)	2802.2879	0.28788512	2033	sp|Q9NUM4|T106B_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1	1	2		1		27.326	27.326	3;4	1.8709E-07	7469	20190902_JH_WT_Ubi_2	99.11	71.186	47470000	8667800	2876600	11669000	5810500	7278600	9887300	0	1280200	0			4597	2033	4049	12822;12823;12824;12825;12826;12827;12828;12829	13446;13447;13448;13449;13450;13451;13452;13453	13453		1930	1093	8
SLSLHNNLLTYLPR	Unmodified	1639.9046	0.90459006	1768	sp|Q96CX6|LRC58_HUMAN	yes	yes	0	0	0	0	0							1			41.436	41.436	3	0.023396	10830	20190902_JH_MUT_Ubi_3	54.871	12.662	474500	0	0	0	0	0	0	474500	0	0			4598	1768	4050	12830	13454	13454				1
SLSLMSQLHPR	Unmodified	1267.6707	0.67069072	53		yes	no	0	0	0	0	0	1	1			1	2	2			38.526	38.526	3	0.0043937	9304	20190902_JH_MUT_Ubi_3	95.483	44.038	18592000	1453200	2593200	0	0	1372900	7252200	5921000	0	0	+		4599	53	4051	12831;12832;12833;12834;12835;12836;12837	13455;13456;13457;13458;13459;13460;13461	13460				7
SLSLNVLRK	GlyGly (K);Deamidation (NQ)	1143.6612	0.66117189	107	sp|O00154-5|BACH_HUMAN	yes	yes	0	1	1	0	1		1								21.325	21.325	3	0.029987	3312	20190821_JH_MUT_Ubi	72.23	11.832	1300300	0	1300300	0	0	0	0	0	0	0			4600	107	4052	12838	13462	13462	44	91		1
SLSNVIAHEISHSWTGNLVTNK	Unmodified	2406.2292	0.22917167	497	sp|P09960-3|LKHA4_HUMAN;sp|P09960-2|LKHA4_HUMAN;sp|P09960-4|LKHA4_HUMAN;sp|P09960|LKHA4_HUMAN	yes	no	0	0	0	0	0				1						40.582	40.582	3	1.2049E-11	10204	20190902_JH_EV_Ubi_2	129.51	95.67	2895400	0	0	0	2895400	0	0	0	0	0			4601	497	4053	12839	13463	13463				1
SLSPPQSQSKLSDSYSNTLPVR	GlyGly (K)	2504.2507	0.25069498	2194	sp|Q9UQB8-3|BAIP2_HUMAN;sp|Q9UQB8-5|BAIP2_HUMAN;sp|Q9UQB8-4|BAIP2_HUMAN;sp|Q9UQB8-2|BAIP2_HUMAN;sp|Q9UQB8|BAIP2_HUMAN;sp|Q9UQB8-6|BAIP2_HUMAN	yes	no	0	0	1	0	1		1				1				33.724	33.724	3	0.0061473	8614	20190902_JH_MUT_Ubi_2	59.614	34.821	4310000	0	2047500	0	0	0	2262500	0	0	0			4602	2194	4054	12840;12841	13464;13465	13465		2050		2
SLSSPTVTLSAPLEGAKDSPVR	GlyGly (K)	2325.2176	0.21760393	1808	sp|Q96PU5-9|NED4L_HUMAN;sp|Q96PU5-4|NED4L_HUMAN;sp|Q96PU5-2|NED4L_HUMAN;sp|Q96PU5-6|NED4L_HUMAN;sp|Q96PU5-5|NED4L_HUMAN;sp|Q96PU5-7|NED4L_HUMAN;sp|Q96PU5|NED4L_HUMAN	yes	no	0	0	1	0	1	1	1		1	1		1		1	37.44	37.44	3	1.8339E-11	9380	20190902_JH_MUT_Ubi_3	129.06	89.133	69537000	11449000	14896000	0	10678000	7695100	0	18264000	0	6555300			4603	1808	4055	12842;12843;12844;12845;12846;12847	13466;13467;13468;13469;13470;13471;13472;13473	13472		1772		8
SLSSSSIGSNSTYLTSKSK	GlyGly (K)	2047.0069	0.0069424565	1543	sp|Q86SQ4-2|AGRG6_HUMAN;sp|Q86SQ4|AGRG6_HUMAN;sp|Q86SQ4-4|AGRG6_HUMAN;sp|Q86SQ4-3|AGRG6_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			27.827	27.827	3	6.4133E-18	5711	20190821_JH_EV_Ubi	151.44	112.93	41509000	6543600	5376800	0	6046200	8563600	5712100	9266600	0	0			4604	1543	4056	12848;12849;12850;12851;12852;12853	13474;13475;13476;13477;13478;13479	13474		1534;1535		6
SLSTSGESLYHVLGLDK	Unmodified	1804.9207	0.92069363	1949	sp|Q9H3Z4-2|DNJC5_HUMAN;sp|Q9H3Z4|DNJC5_HUMAN	yes	no	0	0	0	0	0			1							43.062	43.062	3	0.030835	11226	20190821_JH_WT_Ubi	52.527	8.536	0	0	0	0	0	0	0	0	0	0			4605	1949	4057	12854	13480	13480				1
SLTGILIHIGSQPGK	Unmodified	1519.8722	0.8722273	1387	sp|Q16787-4|LAMA3_HUMAN;sp|Q16787-1|LAMA3_HUMAN;sp|Q16787-3|LAMA3_HUMAN;sp|Q16787|LAMA3_HUMAN	yes	no	0	0	0	0	0	1									39.101	39.101	3	0.034793	9798	20190821_JH_EV_Ubi	44.132	19.168	1752100	1752100	0	0	0	0	0	0	0	0			4606	1387	4058	12855	13481	13481				1
SLTGVVNAQALTSAFSPHTK	Unmodified	2028.064	0.064003825	194	sp|O43175|SERA_HUMAN	yes	yes	0	0	0	0	0	1									41.919	41.919	3	0.034012	10903	20190821_JH_EV_Ubi	45.577	21.29	0	0	0	0	0	0	0	0	0	0			4607	194	4059	12856	13482	13482				1
SLTMSGHVGFESLPDQLVNR	Oxidation (M)	2202.0739	0.073916585	2085	sp|Q9P0V9-3|SEP10_HUMAN;sp|Q9P0V9|SEP10_HUMAN;sp|Q9P0V9-2|SEP10_HUMAN	yes	no	0	0	0	1	0	1									39.268	39.268	3	0.02128	9879	20190821_JH_EV_Ubi	48.288	10.85	2121100	2121100	0	0	0	0	0	0	0	0			4608	2085	4060	12857	13483	13483			1112	1
SLVAFEGEGQFEKLCQESAK	GlyGly (K)	2370.1162	0.11617533	371	sp|O96028-6|NSD2_HUMAN;sp|O96028-5|NSD2_HUMAN;sp|O96028-3|NSD2_HUMAN;sp|O96028|NSD2_HUMAN	yes	no	0	0	1	0	1							1			38.188	38.188	3	0.018595	9766	20190902_JH_MUT_Ubi_3	50.831	28.949	2941500	0	0	0	0	0	0	2941500	0	0			4609	371	4061	12858	13484	13484		332		1
SLVEASSSGVSVLSLCEK	Unmodified	1850.9295	0.92954376	2193	sp|Q9UQ80|PA2G4_HUMAN	yes	yes	0	0	0	0	0							1			41.622	41.622	2	1.884E-35	10926	20190902_JH_MUT_Ubi_3	194.86	147.31	1986900	0	0	0	0	0	0	1986900	0	0			4610	2193	4062	12859	13485	13485				1
SLVHLHFPTWPELGLPDSPSNLLR	Unmodified	2724.4388	0.43877052	1947	sp|Q9H3S7|PTN23_HUMAN	yes	yes	0	0	0	0	0		1	1					1		51.268	51.268	4	0.0031655	14395	20190821_JH_WT_Ubi	57.142	26.715	11480000	0	1061100	6334200	0	0	0	0	4084800	0			4611	1947	4063	12860;12861;12862	13486;13487;13488	13487				3
SLYQSAGVAPESFEYIEAHGTGTK	Unmodified	2541.2023	0.2023478	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0			1			1	1	1	1	39.592	39.592	3	0.0039892	10086	20190902_JH_MUT_Ubi_3	56.748	26.333	20366000	0	0	5330800	0	0	5384900	2194400	3631400	3824500			4612	881	4064	12863;12864;12865;12866;12867	13489;13490;13491;13492;13493	13490				5
SLYYYIQQDTK	Unmodified	1420.6874	0.68744622	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	0	0	0			1							36.662	36.662	2	0.02857	8733	20190821_JH_WT_Ubi	69.01	26.723	58277000	0	0	58277000	0	0	0	0	0	0			4613	446	4065	12868	13494	13494				1
SLYYYIQQDTKGDYQK	GlyGly (K)	2125.9956	0.99564949	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	33.889	33.889	3	9.396E-26	8186	20190902_JH_MUT_Ubi_3	180.27	130.29	408830000	20173000	50248000	103310000	11777000	5862700	65138000	42723000	65985000	43615000			4614	446	4066	12869;12870;12871;12872;12873;12874;12875;12876;12877	13495;13496;13497;13498;13499;13500;13501;13502;13503	13500		445		9
SLYYYIQQDTKGDYQK	GlyGly (K);Deamidation (NQ)	2126.9797	0.97966507	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	1	1	0	1							1		1	34.211	34.211	3	0.0024502	8401	20190902_JH_MUT_Ubi_3	101.75	68.129	14531000	0	0	0	0	0	0	4805600	0	9725200			4615	446	4066	12878;12879	13504;13505	13504	833	445		2
SMEAEMIQLQEELAAAER	2 Oxidation (M)	2079.9453	0.94527018	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	2	0								1		41.073	41.073	2	0.011501	12172	20190902_JH_WT_Ubi_2	51.643	28.526	2787700	0	0	0	0	0	0	0	2787700	0			4616	776	4067	12880	13506	13506			493;494	1
SMEAGSSTEGKYEDEAK	Oxidation (M);GlyGly (K)	1947.8004	0.80038008	2114	sp|Q9UGH3-2|S23A2_HUMAN;sp|Q9UGH3|S23A2_HUMAN	yes	no	0	0	1	1	1	1				1					19.333	19.333	3	0.0034146	3303	20190821_JH_EV_Ubi	75.877	55.829	4826700	2044300	0	0	0	2782400	0	0	0	0			4617	2114	4068	12881;12882	13507;13508	13507		1987	1118	2
SMFCNLEPVLVQLIHSVNR	Oxidation (M)	2271.1504	0.15039277	1529	sp|Q7Z3J2-2|CP062_HUMAN;sp|Q7Z3J2|CP062_HUMAN	yes	no	0	0	0	1	0		1	1							53.052	53.052	3	0.0037881	15007	20190821_JH_WT_Ubi	67.902	44.103	3344000	0	1683600	1660400	0	0	0	0	0	0			4618	1529	4069	12883;12884	13509;13510	13510			916	2
SMFCNLEPVLVQLIHSVNR	Unmodified	2255.1555	0.15547814	1529	sp|Q7Z3J2-2|CP062_HUMAN;sp|Q7Z3J2|CP062_HUMAN	yes	no	0	0	0	0	0		1								54.583	54.583	3	0.036621	14557	20190821_JH_MUT_Ubi	37.157	12.748	503420	0	503420	0	0	0	0	0	0	0			4619	1529	4069	12885	13511	13511				1
SMIASTAITVHYLDLSLNPSGEVTR	Oxidation (M)	2690.3585	0.35853087	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN	yes	no	0	0	0	1	0	1	1				1	1			45.256	45.256	3	2.3651E-15	12284	20190821_JH_EV_Ubi	126.55	68.426	13260000	4083500	3758000	0	0	0	2633900	2784000	0	0			4620	1260	4070	12886;12887;12888;12889	13512;13513;13514;13515;13516	13512			784	5
SMIASTAITVHYLDLSLNPSGEVTR	Unmodified	2674.3636	0.36361624	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN	yes	no	0	0	0	0	0			1							47.778	47.778	3	0.006797	13137	20190821_JH_WT_Ubi	67.992	25.088	1801600	0	0	1801600	0	0	0	0	0	0			4621	1260	4070	12890	13517	13517				0
SMQDVVEDFK	Oxidation (M)	1212.5333	0.53325376	19	sp|P08729|K2C7_HUMAN;CON__Q3KNV1	yes	no	0	0	0	1	0							1			30.409	30.409	2	0.0094988	7145	20190902_JH_MUT_Ubi_3	90.827	44.698	1449700	0	0	0	0	0	0	1449700	0	0		+	4622	19	4071	12891	13518	13518			24	0
SMQDVVEDFKNK	Oxidation (M);GlyGly (K)	1568.7141	0.71407167	19	sp|P08729|K2C7_HUMAN;CON__Q3KNV1	yes	no	0	0	1	1	1	1	1	1	1	1	1	1			27.349	27.349	3	4.0994E-18	5491	20190821_JH_WT_Ubi	182.23	96.271	48824000	2994200	4819600	9518500	2769300	7988000	13758000	6976400	0	0		+	4623	19	4072	12892;12893;12894;12895;12896;12897;12898	13519;13520;13521;13522;13523;13524;13525	13525		41;42	24	7
SMQDVVEDFKNK	GlyGly (K)	1552.7192	0.71915705	19	sp|P08729|K2C7_HUMAN;CON__Q3KNV1	yes	no	0	0	1	0	1									1	34.115	34.115	2	0.033749	9501	20190902_JH_WT_Ubi_3	68.786	13.433	0	0	0	0	0	0	0	0	0	0		+	4624	19	4072	12899	13526	13526		41;42		1
SMQNHAAVFRVGSVLQEGCGK	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	2407.0896	0.089643003	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN;sp|P31040-3|SDHA_HUMAN	yes	no	0	3	1	1	1									1	41.935	41.935	3	0.021341	12166	20190902_JH_WT_Ubi_3	44.587	6.36	5897400	0	0	0	0	0	0	0	0	5897400			4625	739	4073	12900	13527	13527	261;887;888	713	459	1
SMVPVQVQLDVPVVK	Oxidation (M)	1652.9171	0.91712858	613	sp|P18754|RCC1_HUMAN;sp|P18754-2|RCC1_HUMAN	yes	no	0	0	0	1	0									1	42.969	42.969	2	0.0091165	12497	20190902_JH_WT_Ubi_3	70.622	31.747	799890	0	0	0	0	0	0	0	0	799890			4626	613	4074	12901	13528	13528			378	0
SNAHYNLQNAFNLAEQHLGLTK	Unmodified	2482.2353	0.23531968	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	0	0		1	1					1		42.301	42.301	4	0.0063401	10803	20190821_JH_WT_Ubi	54.058	16.37	15376000	0	3429500	8794600	0	0	0	0	3151800	0			4627	1129;1130	4075	12902;12903;12904	13529;13530;13531	13530				3
SNEEGSEEKGPEVR	GlyGly (K)	1659.7336	0.73362114	750	sp|P31947-2|1433S_HUMAN;sp|P31947|1433S_HUMAN	yes	no	0	0	1	0	1		1								18.37	18.37	3	0.020714	2792	20190821_JH_MUT_Ubi	62.891	35.218	371480	0	371480	0	0	0	0	0	0	0			4628	750	4076	12905	13532	13532		722		1
SNELGDVGVHCVLQGLQTPSCK	Unmodified	2397.1417	0.14167857	544	sp|P13489|RINI_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	40.197	40.197	3	8.8015E-30	10024	20190821_JH_WT_Ubi	167.97	117.79	21468000	2535900	0	10391000	0	0	0	0	4203700	4337300			4629	544	4077	12906;12907;12908;12909	13533;13534;13535;13536	13534				4
SNESHCSLQIKALAK	2 Deamidation (NQ)	1686.8247	0.82468476	1607	sp|Q8N1G2|CMTR1_HUMAN	yes	yes	0	2	0	0	1				1						32.947	32.947	2	0.015692	7874	20190902_JH_EV_Ubi_2	61.815	18.519	10356000	0	0	0	10356000	0	0	0	0	0			4630	1607	4078	12910	13537	13537	523;1133			1
SNFAEALAAHK	Unmodified	1157.5829	0.58292157	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0						1	1	1	1	27.684	27.684	3	0.0051591	7332	20190902_JH_WT_Ubi_3	93.442	64.865	12182000	0	0	0	0	0	1098600	1339800	4313800	5429600			4631	444	4079	12911;12912;12913;12914	13538;13539;13540;13541	13541				4
SNFLNCYVSGFHPSDIEVDLLK	Unmodified	2553.221	0.22097475	1028	sp|P61769|B2MG_HUMAN	yes	yes	0	0	0	0	0								1		50.442	50.442	3	3.6492E-06	15081	20190902_JH_WT_Ubi_2	95.365	57.094	3737500	0	0	0	0	0	0	0	3737500	0			4632	1028	4080	12915	13542	13542				1
SNFSNSADDIKSK	GlyGly (K)	1525.7009	0.70086445	848	sp|P45973|CBX5_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1		1	21.548	21.548	3	0.00039672	3394	20190821_JH_MUT_Ubi	116.19	82.961	22583000	1846500	2499400	2926700	2124700	0	3694600	3006400	0	6485300			4633	848	4081	12916;12917;12918;12919;12920;12921;12922	13543;13544;13545;13546;13547;13548;13549	13545		824;825		7
SNKELYGFLFNDFLLLTQITK	GlyGly (K)	2617.3792	0.37918995	1365	sp|Q15811-4|ITSN1_HUMAN;sp|Q15811-9|ITSN1_HUMAN;sp|Q15811-8|ITSN1_HUMAN;sp|Q15811|ITSN1_HUMAN	yes	no	0	0	1	0	1									1	50.18	50.18	3	0.015463	14709	20190902_JH_WT_Ubi_3	51.348	24.871	1336100	0	0	0	0	0	0	0	0	1336100			4634	1365	4082	12923	13550	13550		1407		1
SNLAYDIVQLPTGLTGIK	Unmodified	1902.0462	0.046228496	767	sp|P34932|HSP74_HUMAN;sp|P34932-2|HSP74_HUMAN	yes	no	0	0	0	0	0								1	1	51.209	51.209	2;3	0.0011113	14920	20190902_JH_WT_Ubi_3	77.505	32.492	2517400	0	0	0	0	0	0	0	1606000	911420			4635	767	4083	12924;12925	13551;13552	13552				1
SNLTQHQRIHIGDK	GlyGly (K);Deamidation (NQ)	1760.8918	0.89179354	1169	sp|Q06730|ZN33A_HUMAN;sp|Q06730-2|ZN33A_HUMAN;sp|Q06730-3|ZN33A_HUMAN	yes	no	0	1	1	0	1									1	50.2	50.2	2	0.026622	14704	20190902_JH_WT_Ubi_3	60.167	16.748	835290	0	0	0	0	0	0	0	0	835290			4636	1169	4084	12926	13553	13553	386	1161		0
SNLVDNTNQVEVLQR	Unmodified	1727.8802	0.8802258	2036	sp|Q9UMR2-2|DD19B_HUMAN;sp|Q9UMR2-4|DD19B_HUMAN;sp|Q9NUU7|DD19A_HUMAN;sp|Q9UMR2|DD19B_HUMAN	yes	no	0	0	0	0	0			1							35.003	35.003	2	1.005E-05	8004	20190821_JH_WT_Ubi	120.59	57.956	1556200	0	0	1556200	0	0	0	0	0	0			4637	2036	4085	12927	13554	13554				0
SNMDNMFESYINNLRR	2 Oxidation (M)	2034.8888	0.88875835	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000292931	yes	no	0	0	0	2	1				1						37.849	37.849	3	0.022534	9355	20190902_JH_EV_Ubi_2	43.548	20.067	1113000	0	0	0	1113000	0	0	0	0	0		+	4638	6	4086	12928	13555	13555			7;8	1
SNMGHPEPASGLAALAK	Oxidation (M)	1665.8145	0.81445442	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	1	0				1	1					28.612	28.612	3	5.5039E-08	6472	20190902_JH_EV_Ubi_3	130.01	93.985	5624100	0	0	0	2855500	2768600	0	0	0	0			4639	881	4087	12929;12930	13556;13557	13557			554	2
SNMHFTSSSTGGLSSSQSSYSPSNR	Oxidation (M)	2608.1096	0.1095864	2082	sp|Q9P0J7|KCMF1_HUMAN	yes	yes	0	0	0	1	0				1						25.518	25.518	3	0.00014823	5507	20190902_JH_EV_Ubi_2	77.689	51.062	746300	0	0	0	746300	0	0	0	0	0			4640	2082	4088	12931	13558;13559	13558			1109	2
SNNPAITTAECLKALEQVFGSVESSR	GlyGly (K)	2921.4189	0.41889929	1641	sp|Q8ND90|PNMA1_HUMAN	yes	yes	0	0	1	0	1						1				52.878	52.878	3	1.9506E-12	14839	20190902_JH_MUT_Ubi_2	116.92	97.159	482240	0	0	0	0	0	482240	0	0	0			4641	1641	4089	12932	13560	13560		1642		1
SNNVEDCKMMQVSSGDK	Oxidation (M);GlyGly (K)	2057.8452	0.84523856	1900	sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN	yes	no	0	0	1	1	1	1									22.445	22.445	3	0.026174	3991	20190821_JH_EV_Ubi	56.851	10.988	0	0	0	0	0	0	0	0	0	0			4642	1900	4090	12933	13561	13561		1842	1042;1043	1
SNNVEDCKMMQVSSGDK	2 Oxidation (M);GlyGly (K)	2073.8402	0.84015318	1900	sp|Q9BXS9-7|S26A6_HUMAN;sp|Q9BXS9|S26A6_HUMAN	yes	no	0	0	1	2	1				1						18.947	18.947	3	0.00073895	3935	20190902_JH_EV_Ubi_2	85.362	71.322	1537800	0	0	0	1537800	0	0	0	0	0			4643	1900	4090	12934	13562	13562		1842	1042;1043	1
SNNVEDCKMMVSSGDK	2 Oxidation (M);GlyGly (K)	1945.7816	0.78157567	1901	sp|Q9BXS9-5|S26A6_HUMAN;sp|Q9BXS9-4|S26A6_HUMAN;sp|Q9BXS9-3|S26A6_HUMAN	yes	no	0	0	1	2	1				1	1					19.427	19.427	3	0.014726	4047	20190902_JH_EV_Ubi_3	53.995	36.128	2371000	0	0	0	0	2371000	0	0	0	0			4644	1901	4091	12935;12936	13563;13564	13564		1843	1044;1045	2
SNPGIIGLGGLVSSIAGMITVAYPQMK	2 Oxidation (M);Deamidation (NQ)	2706.3972	0.39722456	275	sp|O75192-2|PX11A_HUMAN;sp|O75192|PX11A_HUMAN	yes	no	0	1	0	2	0			1							55.772	55.772	3	0.035097	15990	20190821_JH_WT_Ubi	40.519	17.042	0	0	0	0	0	0	0	0	0	0			4645	275	4092	12937	13565	13565	795			1
SNTAGSQSQVETEA	Unmodified	1407.6114	0.61138074	1142	sp|Q02790|FKBP4_HUMAN	yes	yes	0	0	0	0	0		1								23.59	23.59	2	0.00017722	3749	20190821_JH_MUT_Ubi	118.77	52.199	538400	0	538400	0	0	0	0	0	0	0			4646	1142	4093	12938	13566	13566				0
SNTGGQAFPQCVFDHWQILPGDPFDNSSR	Unmodified	3276.4683	0.4683091	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0			1					1		52.952	52.952	3	0.0015948	15775	20190902_JH_WT_Ubi_2	51.46	32.093	3775000	0	0	2258900	0	0	0	0	1516100	0			4647	545	4094	12939;12940	13567;13568;13569	13569				3
SNVGASGDHDDSAMKTLR	Oxidation (M);GlyGly (K)	1989.881	0.88103044	1490	sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN;sp|Q6S8J3-3|POTEE_HUMAN;sp|Q6S8J3-2|POTEE_HUMAN	yes	no	0	0	1	1	1	1			1				1		18.583	18.583	3	0.00016523	3854	20190902_JH_EV_Ubi_2	101.01	66.002	5791200	1577200	0	0	2174800	0	0	0	2039300	0			4648	1490	4095	12941;12942;12943	13570;13571;13572	13571		1500	906	3
SNVKIQSTPVK	GlyGly (K)	1313.7303	0.73031409	1058	sp|P62820|RAB1A_HUMAN;sp|P62820-3|RAB1A_HUMAN;sp|P62820-2|RAB1A_HUMAN	yes	no	0	0	1	0	1		1				1	1		1	20.004	20.004	3	2.5663E-05	3170	20190821_JH_MUT_Ubi	112.94	45.723	9820100	0	0	0	0	0	4812900	2511300	0	2495900			4649	1058	4096	12944;12945;12946;12947	13573;13574;13575;13576	13573		1034		4
SPAIKYRPENTPEPVSTSVSHYGAEPTTVSPCPSSSAK	GlyGly (K)	4128.9699	0.96985203	458	sp|P07947|YES_HUMAN	yes	yes	0	0	1	0	2									1	31.018	31.018	4	1.3379E-05	8427	20190902_JH_WT_Ubi_3	64.342	43.75	1777400	0	0	0	0	0	0	0	0	1777400			4650	458	4097	12948	13577	13577		462		1
SPCYVDKNCDLDVACR	GlyGly (K)	2084.8714	0.87139373	738	sp|P30838|AL3A1_HUMAN	yes	yes	0	0	1	0	1		1								29.701	29.701	3	0.009708	5755	20190821_JH_MUT_Ubi	67.326	43.283	500480	0	500480	0	0	0	0	0	0	0			4651	738	4098	12949	13578	13578		712		1
SPDEEDYDYESYEK	Unmodified	1767.6635	0.66353547	860	sp|P46821|MAP1B_HUMAN	yes	yes	0	0	0	0	0									1	31.481	31.481	2	2.3608E-05	8566	20190902_JH_WT_Ubi_3	128.85	103.99	881030	0	0	0	0	0	0	0	0	881030			4652	860	4099	12950	13579	13579				1
SPEEGAETPVYLALLPPDAEGPHGQFVSEK	Unmodified	3163.535	0.53497491	583	sp|P16152|CBR1_HUMAN	yes	yes	0	0	0	0	0								1		46.955	46.955	3	9.1623E-06	14145	20190902_JH_WT_Ubi_2	83.435	55.49	2228500	0	0	0	0	0	0	0	2228500	0			4653	583	4100	12951	13580	13580				1
SPFSVAVSPSLDLSK	Unmodified	1532.8086	0.80862399	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0						1				43.761	43.761	2	1.71E-05	12595	20190902_JH_MUT_Ubi_2	123.95	72.022	6590600	0	0	0	0	0	6590600	0	0	0			4654	637	4101	12952	13581	13581				1
SPGTKDVVVSVEYSK	GlyGly (K)	1707.8679	0.86792978	970	sp|P55011|S12A2_HUMAN;sp|P55011-3|S12A2_HUMAN	yes	no	0	0	1	0	1		1								29.042	29.042	3	0.0020886	5512	20190821_JH_MUT_Ubi	88.108	28.237	1675400	0	1675400	0	0	0	0	0	0	0			4655	970	4102	12953	13582	13582		940;942		1
SPGTRPEDEAEGKPPQR	GlyGly (K)	1963.9348	0.93478057	743	sp|P31641-2|SC6A6_HUMAN;sp|P31641|SC6A6_HUMAN	yes	no	0	0	1	0	2	1		1	1						18.354	18.354	4	0.020739	3821	20190902_JH_EV_Ubi_2	50.653	24.362	4555100	779840	0	2257400	1517900	0	0	0	0	0			4656	743	4103	12954;12955;12956	13583;13584;13585	13584		718		3
SPLCTFYFSNMLGFYPSITHR	Oxidation (M)	2553.1821	0.18208683	396	sp|P03915|NU5M_HUMAN	yes	yes	0	0	0	1	0			1					1		48.622	48.622	3	4.3811E-22	14655	20190902_JH_WT_Ubi_2	154.48	119.55	6518400	0	0	3386000	0	0	0	0	3132300	0			4657	396	4104	12957;12958	13586;13587	13587			187	2
SPLVAAMQHFLPVLK	Oxidation (M)	1665.9276	0.92763369	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	1	0	1	1		1		1	1			40.098	40.098	3	0.003093	9702	20190821_JH_MUT_Ubi	82.705	58.146	12573000	2160600	2950400	0	1566000	0	3630600	2265200	0	0			4658	341	4105	12959;12960;12961;12962;12963	13588;13589;13590;13591;13592	13590			160	5
SPLVAAMQHFLPVLK	Unmodified	1649.9327	0.93271906	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1		1	1	49.096	49.096	3	8.3849E-05	12946	20190821_JH_MUT_Ubi	111.88	88.966	11000000	1408800	2851500	2715100	0	0	2299600	0	561650	1163800			4659	341	4105	12964;12965;12966;12967;12968;12969	13593;13594;13595;13596;13597;13598	13594				6
SPNELVDDLFKGAK	GlyGly (K)	1645.8312	0.83115034	2181	sp|Q9UNZ2|NSF1C_HUMAN;sp|Q9UNZ2-5|NSF1C_HUMAN;sp|Q9UNZ2-4|NSF1C_HUMAN	yes	no	0	0	1	0	1		1								40.63	40.63	3	0.020616	9718	20190821_JH_MUT_Ubi	64.842	31.639	310240	0	310240	0	0	0	0	0	0	0			4660	2181	4106	12970	13599	13599		2039;2040		0
SPPTVLVICGPGNNGGDGLVCAR	Deamidation (NQ)	2310.1097	0.10965016	1640	sp|Q8NCW5-2|NNRE_HUMAN;sp|Q8NCW5|NNRE_HUMAN	yes	no	0	1	0	0	0									1	45.095	45.095	3	0.020369	13194	20190902_JH_WT_Ubi_3	50.956	16.862	1494400	0	0	0	0	0	0	0	0	1494400			4661	1640	4107	12971	13600	13600	533			1
SPSIDSIQKDPR	GlyGly (K)	1455.7318	0.73177065	1837	sp|Q99569-2|PKP4_HUMAN;sp|Q9UQB3-2|CTND2_HUMAN;sp|Q99569|PKP4_HUMAN;sp|Q9UQB3|CTND2_HUMAN	yes	no	0	0	1	0	1						1				24.982	24.982	3	0.014747	5682	20190902_JH_MUT_Ubi_2	74.962	16.332	3282700	0	0	0	0	0	3282700	0	0	0			4662	1837	4108	12972	13601	13601		1798		1
SPSSSQPLPQVPAPAQSQTQFHVQPQPQPK	Unmodified	3220.6265	0.6265243	1372	sp|Q15942|ZYX_HUMAN;sp|Q15942-2|ZYX_HUMAN	yes	no	0	0	0	0	0		1	1						1	35.567	35.567	3	1.5668E-08	8203	20190821_JH_WT_Ubi	98.627	74.558	6163500	0	990440	2842800	0	0	0	0	0	2330200			4663	1372	4109	12973;12974;12975	13602;13603;13604;13605;13606	13603				5
SPTTTQSPKSSFLASLNPK	GlyGly (K)	2104.08	0.08004782	1298	sp|Q14669-4|TRIPC_HUMAN;sp|Q14669|TRIPC_HUMAN;sp|Q14669-2|TRIPC_HUMAN;sp|Q14669-3|TRIPC_HUMAN	yes	no	0	0	1	0	1							1			33.704	33.704	3	0.016432	8301	20190902_JH_MUT_Ubi_3	54.103	26.46	823340	0	0	0	0	0	0	823340	0	0			4664	1298	4110	12976	13607	13607		1362		1
SPVAKDVDLEFLAK	GlyGly (K)	1644.8723	0.87228688	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	37.99	37.99	3	1.5908E-36	10289	20190902_JH_MUT_Ubi_2	195.71	149.33	113610000	5718400	12960000	17874000	4765300	3780300	14318000	18087000	14196000	21908000			4665	974	4111	12977;12978;12979;12980;12981;12982;12983;12984;12985	13608;13609;13610;13611;13612;13613;13614;13615;13616	13612		963		9
SPVYSHFNETLLGVSVIR	Unmodified	2017.0633	0.063275544	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1		1	42.828	42.828	3	7.6167E-05	11169	20190902_JH_MUT_Ubi_3	103.13	53.908	12073000	1676700	2196300	3216600	0	0	2330400	890400	0	1762400			4666	760	4112	12986;12987;12988;12989;12990;12991	13617;13618;13619;13620;13621;13622	13620				6
SPYEKVSAGNGGSSLSYTNPAVAATSANL	GlyGly (K);Deamidation (NQ)	2927.3785	0.37847427	579	sp|P15941-12|MUC1_HUMAN;sp|P15941-16|MUC1_HUMAN;sp|P15941-9|MUC1_HUMAN;sp|P15941-10|MUC1_HUMAN;sp|P15941-15|MUC1_HUMAN;sp|P15941-6|MUC1_HUMAN;sp|P15941-7|MUC1_HUMAN;sp|P15941-11|MUC1_HUMAN;sp|P15941-8|MUC1_HUMAN;sp|P15941-4|MUC1_HUMAN;sp|P15941-3|MUC1_HUMAN;sp|P15941|MUC1_HUMAN;sp|P15941-2|MUC1_HUMAN	yes	no	0	1	1	0	1	2	2	1	1	1	1	1			42.317	42.317	3	1.9035E-14	11276	20190902_JH_MUT_Ubi_3	112.06	74.568	172410000	27503000	54601000	7662200	13505000	5797300	29248000	34090000	0	0			4667	579	4113	12992;12993;12994;12995;12996;12997;12998;12999;13000	13623;13624;13625;13626;13627;13628;13629;13630;13631	13630	213;214	569		9
SPYEKVSAGNGGSSLSYTNPAVAATSANL	GlyGly (K);2 Deamidation (NQ)	2928.3625	0.36248985	579	sp|P15941-12|MUC1_HUMAN;sp|P15941-16|MUC1_HUMAN;sp|P15941-9|MUC1_HUMAN;sp|P15941-10|MUC1_HUMAN;sp|P15941-15|MUC1_HUMAN;sp|P15941-6|MUC1_HUMAN;sp|P15941-7|MUC1_HUMAN;sp|P15941-11|MUC1_HUMAN;sp|P15941-8|MUC1_HUMAN;sp|P15941-4|MUC1_HUMAN;sp|P15941-3|MUC1_HUMAN;sp|P15941|MUC1_HUMAN;sp|P15941-2|MUC1_HUMAN	yes	no	0	2	1	0	1						1				42.295	42.295	3	0.0019831	12112	20190902_JH_MUT_Ubi_2	58.858	31.943	971890	0	0	0	0	0	971890	0	0	0			4668	579	4113	13001	13632	13632	213;214	569		1
SQCTSPQPGTITPSASGCVR	Deamidation (NQ)	2090.9361	0.93610247	2093	sp|Q9P2F5-2|STOX2_HUMAN;sp|Q9P2F5|STOX2_HUMAN	yes	no	0	1	0	0	0			1							41.187	41.187	2	0.03255	10442	20190821_JH_WT_Ubi	55.261	19.609	0	0	0	0	0	0	0	0	0	0			4669	2093	4114	13002	13633	13633	1294			1
SQDGASQFQEVIR	Unmodified	1463.7005	0.70047052	1392	sp|Q16851-2|UGPA_HUMAN	yes	yes	0	0	0	0	0								1		33.822	33.822	2	0.027061	9734	20190902_JH_WT_Ubi_2	64.224	19.202	2850000	0	0	0	0	0	0	0	2850000	0			4670	1392	4115	13003	13634	13634				1
SQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K)	2533.1378	0.13775821	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	0	1	1	1	2	1	1	1	1	2	1	1	1	39.464	39.464	3	7.9936E-211	9325	20190821_JH_MUT_Ubi	313.59	256.69	262090000	49725000	20056000	16572000	57784000	41036000	14950000	29738000	14757000	17471000			4671	463	4116	13004;13005;13006;13007;13008;13009;13010;13011;13012;13013;13014	13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645;13646	13639		473;474	267	11
SQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);Oxidation (M);GlyGly (K);Deamidation (NQ)	2534.1218	0.1217738	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	1	1	1	1	1			1	1	1	1			39.298	39.298	3	5.2748E-60	11122	20190902_JH_MUT_Ubi_2	207.16	172.31	7981800	907130	0	0	1459500	2609200	1115300	1890700	0	0			4672	463	4116	13015;13016;13017;13018;13019	13647;13648;13649;13650;13651;13652	13650	173;838	473;474	267	6
SQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);GlyGly (K)	2517.1428	0.14284359	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	0	1	0	1	1	1	1	2	1	1	1		1	43.048	43.048	2;3	2.1854E-140	11257	20190821_JH_WT_Ubi	266.99	203.59	101460000	18324000	13949000	10300000	16621000	5144800	14081000	15885000	0	7151400			4673	463	4116	13020;13021;13022;13023;13024;13025;13026;13027;13028	13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663	13662		473;474		11
SQDTEVDMKEVELNELEPEK	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	2518.1269	0.12685918	463	sp|P08195-2|4F2_HUMAN	yes	yes	1	1	1	0	1				1		1				43.531	43.531	3	2.4781E-06	12549	20190902_JH_MUT_Ubi_2	120.31	72.557	1334800	0	0	0	671200	0	663610	0	0	0			4674	463	4116	13029;13030	13664;13665	13665	173;838	473;474		2
SQDTEVDMKEVELNELEPEK	Oxidation (M);GlyGly (K)	2491.1272	0.12719353	463	sp|P08195-2|4F2_HUMAN	yes	yes	0	0	1	1	1					1					34.482	34.482	3	0.0004934	8382	20190902_JH_EV_Ubi_3	83.393	44.724	903470	0	0	0	0	903470	0	0	0	0			4675	463	4116	13031	13666	13666		473;474	267	1
SQEGENEEGSEGELVVKFGETLPK	GlyGly (K)	2705.2668	0.26679855	1728	sp|Q92835-3|SHIP1_HUMAN;sp|Q92835-2|SHIP1_HUMAN;sp|Q92835|SHIP1_HUMAN	yes	no	0	0	1	0	1		1	1			1	1			41.118	41.118	3	1.0106E-10	10649	20190902_JH_MUT_Ubi_3	122.65	85.486	11873000	0	2332200	6491900	0	0	1690300	1358200	0	0			4676	1728	4117	13032;13033;13034;13035	13667;13668;13669;13670;13671	13670		1724		5
SQEMVHLVNKESSETPDQFMTADETR	2 Oxidation (M);GlyGly (K)	3154.3819	0.38192144	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	0	1	2	1	1	1	2		1		1	1	1	29.228	29.228	3;4	1.7015E-20	6091	20190821_JH_WT_Ubi	142.32	117.1	97506000	553520	2252700	16922000	0	14009000	0	5423200	29000000	29345000			4677	580	4118	13036;13037;13038;13039;13040;13041;13042;13043	13672;13673;13674;13675;13676;13677;13678;13679	13677		571	364;365	8
SQEMVHLVNKESSETPDQFMTADETR	GlyGly (K)	3122.3921	0.39209219	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	34.993	34.993	4	4.1571E-05	8011	20190821_JH_WT_Ubi	83.436	56.647	27670000	3029100	2293000	10683000	0	0	1371700	1611500	5043700	3637500			4678	580	4118	13044;13045;13046;13047;13048;13049;13050	13680;13681;13682;13683;13684;13685;13686	13684		571		7
SQEMVHLVNKESSETPDQFMTADETR	Oxidation (M);GlyGly (K)	3138.387	0.38700682	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	0	1	1	1			1	1	1			1	2	31.927	31.927	3;4	6.0274E-07	6978	20190821_JH_WT_Ubi	93.21	63.465	40696000	0	0	6977700	5108400	3335600	0	0	11089000	14185000			4679	580	4118	13051;13052;13053;13054;13055;13056	13687;13688;13689;13690;13691;13692;13693	13689		571	364;365	7
SQEMVHLVNKESSETPDQFMTADETR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3155.3659	0.36593702	580	sp|P16070-18|CD44_HUMAN;sp|P16070-12|CD44_HUMAN;sp|P16070-14|CD44_HUMAN;sp|P16070-13|CD44_HUMAN;sp|P16070-11|CD44_HUMAN;sp|P16070-10|CD44_HUMAN;sp|P16070-16|CD44_HUMAN;sp|P16070-8|CD44_HUMAN;sp|P16070-17|CD44_HUMAN;sp|P16070-6|CD44_HUMAN;sp|P16070-4|CD44_HUMAN;sp|P16070-3|CD44_HUMAN;sp|P16070-7|CD44_HUMAN;sp|P16070-5|CD44_HUMAN;sp|P16070|CD44_HUMAN	yes	no	0	1	1	2	1								1		29.397	29.397	3	0.0021718	8154	20190902_JH_WT_Ubi_2	83.317	43.032	0	0	0	0	0	0	0	0	0	0			4680	580	4118	13057	13694	13694	861;862	571	364;365	1
SQENLGNPSKNEDNVK	GlyGly (K)	1885.8766	0.87659699	1931	sp|Q9H0X4-2|F234A_HUMAN;sp|Q9H0X4|F234A_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	20.032	20.032	3	9.8894E-19	3116	20190821_JH_MUT_Ubi	160.04	96.315	58192000	7676600	1851300	7274200	11869000	6154100	4134800	5030400	8281900	5919800			4681	1931	4119	13058;13059;13060;13061;13062;13063;13064;13065;13066	13695;13696;13697;13698;13699;13700;13701;13702;13703	13698		1870;1871		9
SQEQLAAELAEYTAK	Unmodified	1650.8101	0.81008055	568	sp|P15311|EZRI_HUMAN	yes	yes	0	0	0	0	0			2	1		1		1	1	41.363	41.363	2;3	4.4032E-28	12404	20190902_JH_WT_Ubi_2	184.01	124.78	39389000	0	0	23484000	1234500	0	1468900	0	6420100	6781600			4682	568	4120	13067;13068;13069;13070;13071;13072	13704;13705;13706;13707;13708;13709	13708				6
SQGDSNPAAIPHAAEDIQGDDR	Acetyl (Protein N-term)	2305.0207	0.02069504	1100	sp|P68402|PA1B2_HUMAN;sp|P68402-3|PA1B2_HUMAN;sp|P68402-2|PA1B2_HUMAN;sp|P68402-4|PA1B2_HUMAN	yes	no	1	0	0	0	0			1					1	1	35.198	35.198	3	1.3743E-07	9816	20190902_JH_WT_Ubi_3	108.71	76.617	11106000	0	0	3249900	0	0	0	0	4156600	3699600			4683	1100	4121	13073;13074;13075	13710;13711;13712	13712				3
SQGLSQLYHNQSQGLLSQLQGQSK	Unmodified	2628.3256	0.32559125	1103	sp|P78344|IF4G2_HUMAN	yes	yes	0	0	0	0	0	1			1		1				38.826	38.826	3	1.919E-06	9763	20190821_JH_EV_Ubi	90.308	57.955	5571800	3442700	0	0	1260500	0	868560	0	0	0			4684	1103	4122	13076;13077;13078	13713;13714;13715	13713				3
SQGQLNEKPLPEGWEMR	Oxidation (M);GlyGly (K)	2128.0008	0.0007516416	1786	sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN	yes	no	0	0	1	1	1	1	1		1	1	1	1	1	1	31.573	31.573	3	0.00098556	7370	20190902_JH_EV_Ubi_3	90.754	53.171	24958000	3829700	1627600	0	3918100	2056500	2461800	3015700	4063500	3984800			4685	1786	4123	13079;13080;13081;13082;13083;13084;13085;13086	13716;13717;13718;13719;13720;13721;13722;13723	13718		1754	1005	8
SQGQLNEKPLPEGWEMR	GlyGly (K)	2112.0058	0.0058370195	1786	sp|Q96J02-3|ITCH_HUMAN;sp|Q96J02-2|ITCH_HUMAN;sp|Q96J02|ITCH_HUMAN	yes	no	0	0	1	0	1	1									34.721	34.721	3	0.017938	8284	20190821_JH_EV_Ubi	57.197	19.169	1265200	1265200	0	0	0	0	0	0	0	0			4686	1786	4123	13087	13724	13724		1754		1
SQHSGNAQVTQTK	Deamidation (NQ)	1385.6535	0.65352033	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN;sp|Q92499-2|DDX1_HUMAN	yes	no	0	1	0	0	0									1	29.313	29.313	2	0.037266	7815	20190902_JH_WT_Ubi_3	83.869	13.812	11613000	0	0	0	0	0	0	0	0	11613000			4687	1708	4124	13088	13725	13725				1
SQHSGNAQVTQTKFLPNAPK	GlyGly (K)	2266.1454	0.14544204	1708	sp|Q92499-3|DDX1_HUMAN;sp|Q92499|DDX1_HUMAN;sp|Q92499-2|DDX1_HUMAN	yes	no	0	0	1	0	1						1				25.388	25.388	4	0.017408	5797	20190902_JH_MUT_Ubi_2	49.141	25.578	1590800	0	0	0	0	0	1590800	0	0	0			4688	1708	4125	13089	13726	13726		1701		1
SQIFSTASDNQPTVTIK	Unmodified	1835.9265	0.92650729	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0	1				1				1	35.901	35.901	3	0.00050247	10132	20190902_JH_WT_Ubi_3	92.307	62.84	11075000	0	0	0	0	2070700	0	0	0	9004400			4689	517	4126	13090;13091;13092	13727;13728;13729	13729				3
SQNIFGLDVIETPEGDK	2 Deamidation (NQ)	1862.8786	0.87855405	1910	sp|Q9BZA7-7|PC11X_HUMAN;sp|Q9BZA7-2|PC11X_HUMAN;sp|Q9BZA8-3|PC11Y_HUMAN;sp|Q9BZA8-2|PC11Y_HUMAN;sp|Q9BZA8-4|PC11Y_HUMAN;sp|Q9BZA7-6|PC11X_HUMAN;sp|Q9BZA7-5|PC11X_HUMAN;sp|Q9BZA7-4|PC11X_HUMAN;sp|Q9BZA7-3|PC11X_HUMAN;sp|Q9BZA7-8|PC11X_HUMAN;sp|Q9BZA8|PC11Y_HUMAN;sp|Q9BZA7|PC11X_HUMAN	yes	no	0	2	0	0	0		1								20.234	20.234	4	0.031496	3105	20190821_JH_MUT_Ubi	46.156	13.626	2536700	0	2536700	0	0	0	0	0	0	0			4690	1910	4127	13093	13730	13730	610;1237			1
SQNRPQGQSTQPSNAAGTNTTSASTPR	Unmodified	2743.287	0.28697392	2126	sp|Q9UHD9|UBQL2_HUMAN	yes	yes	0	0	0	0	1				1						19.787	19.787	3	1.2152E-09	4134	20190902_JH_EV_Ubi_2	104.5	71.13	396750	0	0	0	396750	0	0	0	0	0			4691	2126	4128	13094	13731	13731				1
SQPFVDHVFTFTILDNR	Unmodified	2035.0163	0.016325351	1681	sp|Q8TDN6|BRX1_HUMAN	yes	yes	0	0	0	0	0			1							48.031	48.031	3	0.026067	13268	20190821_JH_WT_Ubi	46.249	17.929	4112200	0	0	4112200	0	0	0	0	0	0			4692	1681	4129	13095	13732	13732				1
SQPLQNVSTVLQKPNPLYNQNTDMVQK	Oxidation (M);GlyGly (K)	3213.6088	0.60882533	1299	sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN	yes	no	0	0	1	1	1		1	1			1	1	1		38.744	38.744	3	1.8407E-11	9180	20190821_JH_MUT_Ubi	110.89	93.528	11302000	0	2644100	3147000	0	0	2631000	2880400	0	0			4693	1299	4130	13096;13097;13098;13099;13100	13733;13734;13735;13736;13737	13733		1364;1365	811	5
SQPLQNVSTVLQKPNPLYNQNTDMVQK	GlyGly (K)	3197.6139	0.6139107	1299	sp|Q14677-3|EPN4_HUMAN;sp|Q14677-2|EPN4_HUMAN	yes	no	0	0	1	0	1						1				40.118	40.118	3	0.0029843	11207	20190902_JH_MUT_Ubi_2	55.417	39.141	1001200	0	0	0	0	0	1001200	0	0	0			4694	1299	4130	13101	13738	13738		1364;1365		1
SQQPQETAK	GlyGly (K);2 Deamidation (NQ)	1131.5044	0.50439648	1925	sp|Q9H078-4|CLPB_HUMAN	yes	yes	0	2	1	0	0						1				30.818	30.818	2	0.025928	7638	20190902_JH_MUT_Ubi_2	64.207	22.098	8262100	0	0	0	0	0	8262100	0	0	0			4695	1925	4131	13102	13739	13739	1240;1241	1861		0
SQTKEEQSQITSQVTGQIGWR	GlyGly (K)	2504.2255	0.22554286	1767	sp|Q96CW1-2|AP2M1_HUMAN	yes	yes	0	0	1	0	1		1								34.752	34.752	3	0.011156	7683	20190821_JH_MUT_Ubi	55.705	14.753	506310	0	506310	0	0	0	0	0	0	0			4696	1767	4132	13103	13740	13740		1743		1
SQTYESDGKNQANPSR	GlyGly (K)	1894.8405	0.84054583	1239	sp|Q13443|ADAM9_HUMAN	yes	yes	0	0	1	0	1			1		1	1	1	1	1	17.763	17.763	3	2.7697E-10	3222	20190821_JH_WT_Ubi	144.4	110.22	268290000	0	0	59140000	0	45368000	47864000	46905000	45053000	23959000			4697	1239	4133	13104;13105;13106;13107;13108;13109	13741;13742;13743;13744;13745;13746;13747	13744		1306		7
SQTYESDGKNQANPSR	GlyGly (K);Deamidation (NQ)	1895.8246	0.82456142	1239	sp|Q13443|ADAM9_HUMAN	yes	yes	0	1	1	0	1			1		1	1	1			18.331	18.331	3	9.8682E-13	3775	20190902_JH_EV_Ubi_3	157.07	128.11	25417000	0	0	1611000	0	10883000	5251700	7671300	0	0			4698	1239	4133	13110;13111;13112;13113	13748;13749;13750;13751	13748	403;1015;1016	1306		4
SQVFSTAADGQTQVEIK	Unmodified	1807.8952	0.89520716	802	sp|P38646|GRP75_HUMAN	yes	yes	0	0	0	0	0	1									34.358	34.358	2	6.4936E-08	8084	20190821_JH_EV_Ubi	130.66	79.382	3588200	3588200	0	0	0	0	0	0	0	0			4699	802	4134	13114	13752	13752				1
SQVVIPILQWAIASTTLDHR	Unmodified	2247.2376	0.23755152	2243	sp|Q9Y5L0-5|TNPO3_HUMAN;sp|Q9Y5L0-3|TNPO3_HUMAN;sp|Q9Y5L0|TNPO3_HUMAN;sp|Q9Y5L0-1|TNPO3_HUMAN	yes	no	0	0	0	0	0		1	1							55.039	55.039	3	0.0039255	15799	20190821_JH_WT_Ubi	62.709	40.488	7118300	0	2768600	4349700	0	0	0	0	0	0			4700	2243	4135	13115;13116	13753;13754	13754				2
SQYDYILPQVSFTAVGYHK	Unmodified	2215.095	0.094969603	1102	sp|Q5JPE7-3|NOMO2_HUMAN;sp|Q5JPE7-2|NOMO2_HUMAN;sp|P69849|NOMO3_HUMAN;sp|Q5JPE7|NOMO2_HUMAN;sp|Q15155|NOMO1_HUMAN	yes	no	0	0	0	0	0			1							45.643	45.643	3	0.0041056	12286	20190821_JH_WT_Ubi	64.454	41.801	5937200	0	0	5937200	0	0	0	0	0	0			4701	1102	4136	13117	13755	13755				1
SRPGHGGLMPVNGLGFPPQNVAR	Acetyl (Protein N-term);Oxidation (M);3 Deamidation (NQ)	2418.175	0.17502761	1565	sp|Q86Y01|DTX1_HUMAN	yes	yes	1	3	0	1	1									1	25.505	25.505	3	0.020541	6602	20190902_JH_WT_Ubi_3	64.26	21.552	0	0	0	0	0	0	0	0	0	0			4702	1565	4137	13118	13756	13756	508;509;1116		926	1
SRPQDTLGPKDPGLEPGPDSPGGSSPPR	GlyGly (K)	2911.406	0.40602642	1709	sp|Q92508|PIEZ1_HUMAN	yes	yes	0	0	1	0	2	1	1			1		1			29.026	29.026	3;4	5.0864E-07	6566	20190902_JH_EV_Ubi_3	89.891	64.068	26232000	8172100	402240	0	0	8892600	0	8765400	0	0			4703	1709	4138	13119;13120;13121;13122	13757;13758;13759;13760	13758		1705		4
SRYPTFEINTK	GlyGly (K);Deamidation (NQ)	1469.7151	0.71505795	2167	sp|Q9ULL1|PKHG1_HUMAN	yes	yes	0	1	1	0	1								1		41.294	41.294	3	0.032157	12271	20190902_JH_WT_Ubi_2	63.694	12.559	0	0	0	0	0	0	0	0	0	0			4704	2167	4139	13123	13761	13761	692			1
SSAQLSDGNVGSGATGSRPEGLAAVDIGSER	Unmodified	2944.4122	0.41223401	177	sp|O15231-5|ZN185_HUMAN;sp|O15231-4|ZN185_HUMAN;sp|O15231-7|ZN185_HUMAN;sp|O15231|ZN185_HUMAN;sp|O15231-3|ZN185_HUMAN;sp|O15231-8|ZN185_HUMAN;sp|O15231-6|ZN185_HUMAN	yes	no	0	0	0	0	1		1	1					1	1	35.066	35.066	3	2.0216E-10	9752	20190902_JH_WT_Ubi_3	101.75	76.149	12167000	0	977080	4573000	0	0	0	0	2854500	3762700			4705	177	4140	13124;13125;13126;13127	13762;13763;13764;13765	13765				4
SSAYESLMEIVKNSAK	GlyGly (K)	1869.9142	0.91422805	1311	sp|Q14974-2|IMB1_HUMAN;sp|Q14974|IMB1_HUMAN	yes	no	0	0	1	0	1		1	1			1				44.592	44.592	3	0.00071799	11407	20190821_JH_MUT_Ubi	96.707	52.511	5147300	0	1265500	3222300	0	0	659570	0	0	0			4706	1311	4141	13128;13129;13130	13766;13767;13768	13766		1370;1371		3
SSDEAVILCK	Unmodified	1120.5434	0.54342452	2177	sp|Q9UNM6|PSD13_HUMAN;sp|Q9UNM6-2|PSD13_HUMAN	yes	no	0	0	0	0	0									1	28.942	28.942	2	0.013157	7723	20190902_JH_WT_Ubi_3	89.886	25.465	1337600	0	0	0	0	0	0	0	0	1337600			4707	2177	4142	13131	13769	13769				0
SSDEAVILCKTAIGALK	GlyGly (K)	1888.9928	0.99281272	2177	sp|Q9UNM6|PSD13_HUMAN;sp|Q9UNM6-2|PSD13_HUMAN	yes	no	0	0	1	0	1		1	1	1	1	1	1			39.578	39.578	3	0.00022264	10957	20190902_JH_MUT_Ubi_2	103.39	61.692	18866000	0	2703100	6555200	2038300	1566800	3478400	2524000	0	0			4708	2177	4143	13132;13133;13134;13135;13136;13137	13770;13771;13772;13773;13774;13775	13773		2032		6
SSDNLGKSLSSSSIGSNSTYLTSK	GlyGly (K)	2533.2144	0.21436905	1543	sp|Q86SQ4-2|AGRG6_HUMAN;sp|Q86SQ4|AGRG6_HUMAN;sp|Q86SQ4-4|AGRG6_HUMAN;sp|Q86SQ4-3|AGRG6_HUMAN	yes	no	0	0	1	0	1		1		1			1			33.132	33.132	3	0.0001233	7951	20190902_JH_EV_Ubi_2	81.888	46.263	15362000	0	3501500	0	3723800	0	0	8136600	0	0			4709	1543	4144	13138;13139;13140	13776;13777;13778	13776		1534;1536		3
SSEAETQQPPAAPPAAPALSAADTK	Acetyl (Protein N-term)	2447.1816	0.18161236	1090	sp|P67809|YBOX1_HUMAN	yes	yes	1	0	0	0	0			1						1	40.899	40.899	3	0.00055965	10364	20190821_JH_WT_Ubi	67.136	27.287	17204000	0	0	8237500	0	0	0	0	0	8966400			4710	1090	4145	13141;13142	13779;13780	13779				2
SSEDATDDISSGNIPVLQKDK	GlyGly (K)	2332.103	0.10302769	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1		1		1	1	1	1	1		34.661	34.661	3	2.3483E-45	7751	20190821_JH_MUT_Ubi	187.5	127.64	49207000	0	6522900	0	4460900	6257200	7705300	11817000	12443000	0			4711	1570	4146	13143;13144;13145;13146;13147;13148	13781;13782;13783;13784;13785;13786	13783		1565;1566		5
SSEHENAYENVPEEEGKVR	GlyGly (K)	2316.0254	0.025446067	1213	sp|Q13113|PDZ1I_HUMAN	yes	yes	0	0	1	0	1	1	1				1				23.57	23.57	3;4	0.005489	3829	20190821_JH_MUT_Ubi	65.175	22.542	4022300	1720300	413200	0	0	0	1888800	0	0	0			4712	1213	4147	13149;13150;13151	13787;13788;13789	13788		1279		3
SSEHINEGETAMLVCK	Oxidation (M)	1819.808	0.80804841	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	0	0	1	0								1	1	26.205	26.205	3	0.00077146	7091	20190902_JH_WT_Ubi_2	94.673	40.149	5605700	0	0	0	0	0	0	0	2938700	2666900			4713	778	4148	13152;13153	13790;13791;13792;13793	13790			496	4
SSEHINEGETAMLVCK	Unmodified	1803.8131	0.81313379	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN;sp|P35613-3|BASI_HUMAN	yes	no	0	0	0	0	0								1		29.035	29.035	3	0.018261	7996	20190902_JH_WT_Ubi_2	53.828	18.092	6856100	0	0	0	0	0	0	0	6856100	0			4714	778	4148	13154	13794	13794				1
SSEMNVLIPTEGGDFNEFPVPEQFK	Oxidation (M)	2826.3058	0.30582659	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	0	0	1	0			1						1	51.065	51.065	3	5.707E-06	14897	20190902_JH_WT_Ubi_3	86.997	57.268	6148200	0	0	3026000	0	0	0	0	0	3122200			4715	1132	4149	13155;13156	13795;13796	13796			705	2
SSEPPPPYPGGPTAPLLEEKSGAPPTPGR	Acetyl (Protein N-term);GlyGly (K)	3038.4985	0.49852982	1942	sp|Q9H305-3|CDIP1_HUMAN;sp|Q9H305-2|CDIP1_HUMAN;sp|Q9H305|CDIP1_HUMAN	yes	no	1	0	1	0	1							1			42.431	42.431	3	0.0074406	11142	20190902_JH_MUT_Ubi_3	44.933	13.158	4619500	0	0	0	0	0	0	4619500	0	0			4716	1942	4150	13157	13797	13797		1877		1
SSESKEQHNVSPR	Acetyl (Protein N-term);GlyGly (K)	1639.755	0.75502529	905	sp|P50443|S26A2_HUMAN	yes	yes	1	0	1	0	1	1	1		1	1	1	1	1		17.111	17.111	3	0.00022348	3588	20190902_JH_EV_Ubi_2	117.95	66.935	70544000	10269000	2225500	0	24654000	13153000	10977000	5645100	3621900	0			4717	905	4151	13158;13159;13160;13161;13162;13163;13164	13798;13799;13800;13801;13802;13803;13804;13805	13799		870		8
SSESKEQHNVSPR	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	1640.739	0.73904087	905	sp|P50443|S26A2_HUMAN	yes	yes	1	1	1	0	1				1						18.099	18.099	3	0.019532	3783	20190902_JH_EV_Ubi_2	90.697	42.129	1284000	0	0	0	1284000	0	0	0	0	0			4718	905	4151	13165	13806	13806	312;935	870		1
SSFYVNGLTLGGQKCSVIR	GlyGly (K);Deamidation (NQ)	2200.0947	0.094652027	451	sp|P07737|PROF1_HUMAN	yes	yes	0	1	1	0	1						1	1		1	38.901	38.901	3	0.0070215	9923	20190902_JH_MUT_Ubi_3	87.669	61.195	20414000	0	0	0	0	0	10899000	5740500	0	3774500			4719	451	4152	13166;13167;13168	13807;13808;13809	13808	166	451		3
SSGCDVNLPGVNVKLPTGQISGPEIK	GlyGly (K)	2779.4174	0.41744273	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1				1			1			42.289	42.289	3	0.00028523	10729	20190902_JH_EV_Ubi_2	73.831	46.336	2275900	0	0	0	757740	0	0	1518200	0	0			4720	1190	4153	13169;13170	13810;13811	13810		1229		2
SSGGKGGSCSQAACSNSAQGSDESLITCK	GlyGly (K)	3004.2557	0.25567507	507	sp|P10321|1C07_HUMAN	yes	yes	0	0	1	0	1		1			1			1	1	24.495	24.495	3	1.0076E-31	5211	20190902_JH_EV_Ubi_3	149.91	122.89	7513900	0	1385500	0	0	933140	0	0	2209500	2985800			4721	507	4154	13171;13172;13173;13174	13812;13813;13814;13815;13816	13812		498;499		5
SSGGKGGSCSQAACSNSAQGSDESLITCKA	2 GlyGly (K)	3189.3357	0.3357163	507	sp|P10321|1C07_HUMAN	yes	yes	0	0	2	0	2						1				25.792	25.792	3	0.0077318	5942	20190902_JH_MUT_Ubi_2	65.33	43.382	433940	0	0	0	0	0	433940	0	0	0			4722	507	4155	13175	13817	13817		498;499		1
SSGGKGGSYSQAACSDSAQGSDVSLTA	GlyGly (K)	2648.1256	0.1256304	388	sp|Q31610|1B81_HUMAN;sp|Q04826|1B40_HUMAN;sp|P30486|1B48_HUMAN;sp|P30485|1B47_HUMAN;sp|P30481|1B44_HUMAN;sp|P30480|1B42_HUMAN;sp|P30479|1B41_HUMAN;sp|P30461|1B13_HUMAN;sp|P30460|1B08_HUMAN;sp|P18465|1B57_HUMAN;sp|P03989|1B27_HUMAN;sp|P01889|1B07_HUMAN	yes	no	0	0	1	0	1			1							29.652	29.652	3	1.5513E-08	6214	20190821_JH_WT_Ubi	99.078	75.384	2931200	0	0	2931200	0	0	0	0	0	0			4723	388	4156	13176	13818	13818		354		1
SSGIHVALVTGGNK	Acetyl (Protein N-term)	1380.7361	0.73612775	583	sp|P16152|CBR1_HUMAN;sp|P16152-2|CBR1_HUMAN	yes	no	1	0	0	0	0						1		1		34.924	34.924	2	3.0432E-15	10178	20190902_JH_WT_Ubi_2	160.72	105.35	37081000	0	0	0	0	0	14957000	0	22124000	0			4724	583	4157	13177;13178	13819;13820	13820				2
SSGNDPKYSTTTAQNSSSSSSQSK	GlyGly (K)	2549.1114	0.11136054	1924	sp|Q9H040|SPRTN_HUMAN	yes	yes	0	0	1	0	1		1		1	1	1	1			17.812	17.812	3	4.803E-23	2725	20190821_JH_MUT_Ubi	152.38	122.09	9585400	0	1183600	0	2446000	2208700	2064300	1682800	0	0			4725	1924	4158	13179;13180;13181;13182;13183	13821;13822;13823;13824;13825;13826	13824		1860		6
SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK	Oxidation (M)	3718.7129	0.71290906	1293	sp|Q14444-2|CAPR1_HUMAN;sp|Q14444|CAPR1_HUMAN	yes	no	0	0	0	1	0	1		1							27.325	27.325	3	3.1317E-06	5465	20190821_JH_WT_Ubi	64.405	38.957	1811900	648940	0	1162900	0	0	0	0	0	0			4726	1293	4159	13184;13185	13827;13828	13828			805	2
SSGSGAGKGAVSAEQVIAGFNR	GlyGly (K)	2163.0669	0.066857372	2135	sp|Q9UHV9|PFD2_HUMAN	yes	yes	0	0	1	0	1						1				34.44	34.44	3	5.2609E-05	9038	20190902_JH_MUT_Ubi_2	86.179	61.261	1251400	0	0	0	0	0	1251400	0	0	0			4727	2135	4160	13186	13829	13829		2006		1
SSGSNQPFPIKPLSESK	GlyGly (K)	1915.964	0.96395543	1455	sp|Q5W0Z9|ZDH20_HUMAN	yes	yes	0	0	1	0	1							1			31.365	31.365	3	0.028207	7467	20190902_JH_MUT_Ubi_3	50.079	15.901	1463000	0	0	0	0	0	0	1463000	0	0			4728	1455	4161	13187	13830	13830		1468		1
SSGVALSIAVGLLECTFPNTGAR	Unmodified	2319.1893	0.18928069	1350	sp|Q15436-2|SC23A_HUMAN;sp|Q15436|SC23A_HUMAN	yes	no	0	0	0	0	0		1								55.507	55.507	3	0.00049713	14824	20190821_JH_MUT_Ubi	73.346	18.372	766060	0	766060	0	0	0	0	0	0	0			4729	1350	4162	13188	13831	13831				1
SSHHETNSAYMLSPKPQKK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2301.0696	0.069559488	358	sp|O95800|GPR75_HUMAN	yes	yes	0	2	1	1	2						1				67.476	67.476	2	0.034955	16868	20190902_JH_MUT_Ubi_2	42.095	6.5726	0	0	0	0	0	0	0	0	0	0			4730	358	4163	13189	13832	13832	115;808			1
SSHKGSVVAQGNGAPASNR	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	1979.9409	0.94092858	1751	sp|Q96A54|PAQR1_HUMAN	yes	yes	1	1	1	0	1					1		1			19.903	19.903	3	0.0086783	4143	20190902_JH_EV_Ubi_3	60.669	35.022	1424100	0	0	0	0	1134800	0	289250	0	0			4731	1751	4164	13190;13191	13833;13834	13833	568	1737		2
SSHLKGQAVPASK	GlyGly (K)	1422.7579	0.75792582	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1		1								15.619	15.619	3	0.01088	2381	20190821_JH_MUT_Ubi	75.483	47.05	270170	0	270170	0	0	0	0	0	0	0			4732	1614	4165	13192	13835	13835		1609;1616		1
SSIKQGPELK	GlyGly (K)	1199.651	0.65100113	59		yes	no	0	0	1	0	1							1			22.063	22.063	3	0.014132	4704	20190902_JH_MUT_Ubi_3	85.355	13.029	5328300	0	0	0	0	0	0	5328300	0	0	+		4733	59	4166	13193	13836	13836		60		1
SSILLDVKPWDDETDMAK	Oxidation (M)	2077.9878	0.98778692	671	sp|P24534|EF1B_HUMAN	yes	yes	0	0	0	1	1		1	1	1		1				41.482	41.482	3	0.0017009	10602	20190821_JH_WT_Ubi	86.548	46.863	12443000	0	2644400	5718000	1042800	0	3038100	0	0	0			4734	671	4167	13194;13195;13196;13197	13837;13838;13839;13840	13840			414	4
SSKASLGSLEGEAEAEASSPK	GlyGly (K)	2148.0182	0.018235424	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1		1		31.996	31.996	3	2.0644E-11	7562	20190902_JH_EV_Ubi_2	130.52	83.63	22708000	5065600	1887900	0	6263000	3813600	3143200	0	2534300	0			4735	1190	4168	13198;13199;13200;13201;13202;13203	13841;13842;13843;13844;13845;13846	13842		1230		6
SSKTASTNNIAQAR	Acetyl (Protein N-term);GlyGly (K)	1603.7914	0.79141079	2102	sp|Q9UBI6|GBG12_HUMAN	yes	yes	1	0	1	0	1				1						22.882	22.882	2	0.0096706	4777	20190902_JH_EV_Ubi_2	73.951	9.1107	7671500	0	0	0	7671500	0	0	0	0	0			4736	2102	4169	13204	13847	13847		1981		1
SSLLSAVLGELAPSHGLVSVHGR	Unmodified	2285.2492	0.24917883	187	sp|O15439|MRP4_HUMAN;sp|O15439-4|MRP4_HUMAN;sp|O15439-3|MRP4_HUMAN;sp|O15439-2|MRP4_HUMAN	yes	no	0	0	0	0	0		1	1							47.799	47.799	4	0.019309	13075	20190821_JH_WT_Ubi	41.115	10.403	12747000	0	1726900	11020000	0	0	0	0	0	0			4737	187	4170	13205;13206	13848;13849	13849				2
SSLQYSSPAPDGCGDQTLGDLLLTPTR	Unmodified	2848.3549	0.35490205	648	sp|P22102|PUR2_HUMAN	yes	yes	0	0	0	0	0									1	48.825	48.825	3	0.0091433	14345	20190902_JH_WT_Ubi_3	46.106	10.933	1082900	0	0	0	0	0	0	0	0	1082900			4738	648	4171	13207	13850	13850				1
SSQAQAQELETKAELLQSDENGIPSSPQK	GlyGly (K);Deamidation (NQ)	3227.543	0.54297341	1295	sp|Q14542-3|S29A2_HUMAN;sp|Q14542|S29A2_HUMAN	yes	no	0	1	1	0	1		1								38.757	38.757	3	1.1898E-05	9038	20190821_JH_MUT_Ubi	90.127	62.036	469500	0	469500	0	0	0	0	0	0	0			4739	1295	4172	13208	13851	13851	416	1356		1
SSQIGAVVSHQSSVIPDR	Unmodified	1865.9595	0.95953875	2048	sp|Q9NVS9-3|PNPO_HUMAN;sp|Q9NVS9|PNPO_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	30.778	30.778	3	6.2838E-06	6608	20190821_JH_WT_Ubi	112.01	75.719	59845000	5685600	2852800	11390000	4786400	4734800	3540500	3622500	13081000	10151000			4740	2048	4173	13209;13210;13211;13212;13213;13214;13215;13216;13217	13852;13853;13854;13855;13856;13857;13858;13859;13860	13858				9
SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR	Oxidation (M);GlyGly (K)	3368.4303	0.43034497	1246	sp|Q13501-2|SQSTM_HUMAN;sp|Q13501|SQSTM_HUMAN	yes	no	0	0	1	1	1				1	1			1		28.514	28.514	3	7.8126E-05	7929	20190902_JH_WT_Ubi_2	72.728	54.429	4066600	0	0	0	595440	429950	0	0	3041200	0			4741	1246	4174	13218;13219;13220	13861;13862;13863	13863		1316	777	3
SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR	Oxidation (M);GlyGly (K);Deamidation (NQ)	3369.4144	0.41436055	1246	sp|Q13501-2|SQSTM_HUMAN;sp|Q13501|SQSTM_HUMAN	yes	no	0	1	1	1	1									1	28.446	28.446	3	0.00013577	7543	20190902_JH_WT_Ubi_3	75.588	55.685	2231500	0	0	0	0	0	0	0	0	2231500			4742	1246	4174	13221	13864	13864	1017	1316	777	1
SSSVGSSSSYPISPAVSR	Unmodified	1753.8483	0.84825697	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1	1	1				1			31.685	31.685	2	1.9414E-08	6832	20190821_JH_WT_Ubi	128.95	71.401	22086000	2594800	1957900	14184000	0	0	0	3349300	0	0			4743	1332	4175	13222;13223;13224;13225	13865;13866;13867;13868	13868				2
SSVLIAQQTDTSDPEK	Unmodified	1717.837	0.83702358	851	sp|P46060|RAGP1_HUMAN	yes	yes	0	0	0	0	0									1	29.756	29.756	2	3.5909E-14	7995	20190902_JH_WT_Ubi_3	157.56	103.99	3127400	0	0	0	0	0	0	0	0	3127400			4744	851	4176	13226	13869	13869				1
SSVNCPFSSQDMKYPSPFFVFGEK	Oxidation (M);GlyGly (K)	2914.2942	0.29421605	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	1	1	1		1								46.086	46.086	3	0.014305	11891	20190821_JH_MUT_Ubi	57.39	35.549	0	0	0	0	0	0	0	0	0	0			4745	1182	4177	13227	13870	13870		1175	742	1
SSVVSPSHPPPAPPLGSPPGPK	Unmodified	2088.1004	0.10038933	2264	sp|Q9Y6W5|WASF2_HUMAN	yes	yes	0	0	0	0	0									1	31.463	31.463	3	0.006911	8589	20190902_JH_WT_Ubi_3	55.337	21.502	2057700	0	0	0	0	0	0	0	0	2057700			4746	2264	4178	13228	13871	13871				1
SSYYKSLLSAEEAAK	GlyGly (K)	1759.8628	0.8628444	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	1	0	1		1								33.792	33.792	3	0.024139	7305	20190821_JH_MUT_Ubi	57.788	10.599	1358200	0	1358200	0	0	0	0	0	0	0			4747	1518	4179	13229	13872	13872		1515		1
STACQMLVCYAKELK	GlyGly (K)	1914.9002	0.90017466	124	sp|O00410|IPO5_HUMAN;sp|O00410-2|IPO5_HUMAN;sp|O00410-3|IPO5_HUMAN	yes	no	0	0	1	0	1		1				1				39.713	39.713	3	0.0069861	10981	20190902_JH_MUT_Ubi_2	73.91	51.756	2768000	0	1202500	0	0	0	1565500	0	0	0			4748	124	4180	13230;13231	13873;13874	13874		112;113		2
STAEGEAFIQALPGSGTTPLLR	Unmodified	2215.1485	0.14846174	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	0	0	0	1									48.309	48.309	2	2.4394E-45	13110	20190821_JH_EV_Ubi	185.14	98.371	1979200	1979200	0	0	0	0	0	0	0	0			4749	245	4181	13232	13875;13876	13876				2
STAGDTHLGGEDFDNR	Unmodified	1690.7183	0.71830543	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN;sp|P54652|HSP72_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	25.681	25.681	3	0.00029152	5559	20190902_JH_MUT_Ubi_3	101.75	77.925	229240000	8909400	3567400	52969000	11940000	10795000	5640100	7085600	58363000	69973000			4750	519	4182	13233;13234;13235;13236;13237;13238;13239;13240;13241	13877;13878;13879;13880;13881;13882;13883;13884;13885	13882				9
STAISLFYELSENDLNFIK	Unmodified	2203.1049	0.10486559	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0			1							55.564	55.564	3	0.0027143	15954	20190821_JH_WT_Ubi	69.188	27.493	3107600	0	0	3107600	0	0	0	0	0	0			4751	545	4183	13242	13886	13886				1
STANNVEIHIPVPNDADSPK	Unmodified	2117.0389	0.038911287	1899	sp|Q9BXS5|AP1M1_HUMAN;sp|Q9BXS5-2|AP1M1_HUMAN	yes	no	0	0	0	0	0			1							35.617	35.617	3	0.00010084	8224	20190821_JH_WT_Ubi	88.319	48.802	1035000	0	0	1035000	0	0	0	0	0	0			4752	1899	4184	13243	13887	13887				1
STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR	Unmodified	3441.5889	0.58889452	1227	sp|Q13263-2|TIF1B_HUMAN;sp|Q13263|TIF1B_HUMAN	yes	no	0	0	0	0	0			1	1					1	43.188	43.188	3	0.0032575	10941	20190902_JH_EV_Ubi_2	40.037	23.371	7423300	0	0	3776500	817720	0	0	0	0	2829100			4753	1227	4185	13244;13245;13246	13888;13889;13890	13888				3
STEEPIVKVVER	GlyGly (K)	1498.7991	0.79912193	1255	sp|Q13618-3|CUL3_HUMAN;sp|Q13618-2|CUL3_HUMAN;sp|Q13618|CUL3_HUMAN	yes	no	0	0	1	0	1				1	1			1	1	29.573	29.573	3	0.0049848	8285	20190902_JH_WT_Ubi_2	95.094	58.773	7684600	0	0	0	0	1913100	0	0	3082700	2688900			4754	1255	4186	13247;13248;13249;13250	13891;13892;13893;13894	13893		1322		4
STEPELIQVKSELPLDPLPVPTEEGNPLLK	GlyGly (K)	3395.8076	0.80756794	1364	sp|Q15758-3|AAAT_HUMAN;sp|Q15758-2|AAAT_HUMAN;sp|Q15758|AAAT_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	52.002	52.002	3	1.2004E-21	14734	20190821_JH_WT_Ubi	133.45	111.35	582420000	121370000	100700000	147390000	5053500	16765000	37337000	41779000	41703000	70330000			4755	1364	4187	13251;13252;13253;13254;13255;13256;13257;13258;13259	13895;13896;13897;13898;13899;13900;13901;13902;13903;13904;13905;13906;13907;13908	13906		1405;1406		14
STEPELIQVKSELPLDPLPVPTEEGNPLLK	GlyGly (K);Deamidation (NQ)	3396.7916	0.79158352	1364	sp|Q15758-3|AAAT_HUMAN;sp|Q15758-2|AAAT_HUMAN;sp|Q15758|AAAT_HUMAN	yes	no	0	1	1	0	1						1			1	52.243	52.243	3	1.1237E-14	15157	20190902_JH_WT_Ubi_3	113.68	85.584	5664600	0	0	0	0	0	2607400	0	0	3057200			4756	1364	4187	13260;13261	13909;13910;13911	13910	434	1405;1406		3
STEPELIQVKSELPLDPLPVPTEEGNPLLKHYR	2 GlyGly (K)	3966.0738	0.073846815	1364	sp|Q15758-3|AAAT_HUMAN;sp|Q15758-2|AAAT_HUMAN;sp|Q15758|AAAT_HUMAN	yes	no	0	0	2	0	2	1									46.466	46.466	4	0.00063737	12584	20190821_JH_EV_Ubi	61.436	48.287	4081700	4081700	0	0	0	0	0	0	0	0			4757	1364	4188	13262	13912	13912		1405;1406		1
STGGAPTFNVTVTK	Unmodified	1378.7092	0.70924429	451	sp|P07737|PROF1_HUMAN	yes	yes	0	0	0	0	0								1		33.066	33.066	2	1.6326E-18	9430	20190902_JH_WT_Ubi_2	184.98	124.54	181830000	0	0	0	0	0	0	0	181830000	0			4758	451	4189	13263	13913	13913				0
STGGAPTFNVTVTKTDK	GlyGly (K)	1836.9218	0.92175626	451	sp|P07737|PROF1_HUMAN	yes	yes	0	0	1	0	1		1	1	1		1	1	1	1	29.104	29.104	3	0.000201	6947	20190902_JH_MUT_Ubi_2	104.26	73.819	134540000	0	13069000	20720000	13315000	0	16602000	32479000	23731000	14620000			4759	451	4190	13264;13265;13266;13267;13268;13269;13270	13914;13915;13916;13917;13918;13919;13920	13916		452;453		7
STLINSLFLTDLYSPEYPGPSHR	Unmodified	2606.3017	0.30166791	1373	sp|Q16181-2|SEPT7_HUMAN;sp|Q16181|SEPT7_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	2	1	1	1	1	49.754	49.754	3	6.6619E-46	14301	20190821_JH_WT_Ubi	186.74	154.59	58343000	3051700	3030900	20082000	320620	1929300	2754700	2833000	11264000	13076000			4760	1373	4191	13271;13272;13273;13274;13275;13276;13277;13278;13279;13280	13921;13922;13923;13924;13925;13926;13927;13928;13929;13930;13931	13928				11
STLITDGSTPINLFNTAFGLLGMGPEGQPLGR	Oxidation (M)	3289.6653	0.66527757	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	1	0		1	1				1	1		57.445	57.445	3	3.1131E-18	16278	20190821_JH_WT_Ubi	122.67	104.72	11492000	0	3185600	3361700	0	0	0	2221500	2723300	0			4761	1306	4192	13281;13282;13283;13284	13932;13933;13934;13935;13936	13934			817	5
STLLINQPQYAWLK	Acetyl (Protein N-term)	1715.9247	0.9246568	884	sp|P49419-2|AL7A1_HUMAN	yes	yes	1	0	0	0	0			1							54.876	54.876	2	9.9534E-11	15750	20190821_JH_WT_Ubi	160.18	97.716	2096400	0	0	2096400	0	0	0	0	0	0			4762	884	4193	13285	13937	13937				0
STLLKQYENLILEFQQSFGK	Deamidation (NQ)	2386.242	0.24202777	1504	sp|Q6ZR62|RTL4_HUMAN	yes	yes	0	1	0	0	1								1		42.452	42.452	4	0.013912	12612	20190902_JH_WT_Ubi_2	63.145	30.581	1874100	0	0	0	0	0	0	0	1874100	0			4763	1504	4194	13286	13938	13938	1092;1093			0
STPVSQLGSADFPEAPDPFQPLGADSGDPFQSKK	GlyGly (K)	3630.7114	0.71143572	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1	1	48.396	48.396	3	6.592E-13	12731	20190902_JH_MUT_Ubi_3	106.66	92.855	37832000	4895100	6964700	9088000	0	1808900	4840700	2044100	4738100	3452200			4764	2101	4195	13287;13288;13289;13290;13291;13292;13293;13294	13939;13940;13941;13942;13943;13944;13945;13946;13947	13943		1979;1980		9
STPVSQLGSADFPEAPDPFQPLGADSGDPFQSKK	GlyGly (K);Deamidation (NQ)	3631.6955	0.69545131	2101	sp|Q9UBC2-2|EP15R_HUMAN;sp|Q9UBC2|EP15R_HUMAN	yes	no	0	1	1	0	1						1				48.654	48.654	3	0.00056469	14070	20190902_JH_MUT_Ubi_2	60.101	34.826	534330	0	0	0	0	0	534330	0	0	0			4765	2101	4195	13295	13948	13948	1297	1979;1980		1
STQAPLIIRPDSGNPLDTVLK	Unmodified	2234.227	0.22704641	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	1	1		1	1				1	1	44.295	44.295	3	2.3669E-05	12841	20190902_JH_WT_Ubi_3	96.562	73.535	98547000	4743700	0	43697000	1946000	0	0	0	18690000	29470000			4766	845	4196	13296;13297;13298;13299;13300	13949;13950;13951;13952;13953	13953				5
STRKYLQPDNLSK	2 Deamidation (NQ)	1550.794	0.79403656	978	sp|P55157|MTP_HUMAN	yes	yes	0	2	0	0	2						1				33.248	33.248	2	0.01651	8568	20190902_JH_MUT_Ubi_2	83.081	17.735	26108000	0	0	0	0	0	26108000	0	0	0			4767	978	4197	13301	13954	13954	324;950			1
STSAPQMSPGSSDNQSSSPQPAQQK	Oxidation (M)	2547.1143	0.11433743	1281	sp|Q14157-4|UBP2L_HUMAN;sp|Q14157-1|UBP2L_HUMAN;sp|Q14157-3|UBP2L_HUMAN;sp|Q14157|UBP2L_HUMAN;sp|Q14157-5|UBP2L_HUMAN	yes	no	0	0	0	1	0	1							1		21.23	21.23	3	1.5941E-12	5398	20190902_JH_WT_Ubi_2	119.34	91.203	2481100	510870	0	0	0	0	0	0	1970300	0			4768	1281	4198	13302;13303	13955;13956	13956			795	2
STSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAK	Unmodified	3937.7865	0.78651074	1196	sp|Q12797-6|ASPH_HUMAN;sp|Q12797-11|ASPH_HUMAN;sp|Q12797-2|ASPH_HUMAN;sp|Q12797|ASPH_HUMAN;sp|Q12797-9|ASPH_HUMAN;sp|Q12797-5|ASPH_HUMAN;sp|Q12797-8|ASPH_HUMAN;sp|Q12797-10|ASPH_HUMAN	yes	no	0	0	0	0	0			1					1	1	36.792	36.792	3	0.007145	10830	20190902_JH_WT_Ubi_2	38.029	12.303	8941800	0	0	3262700	0	0	0	0	2853500	2825600			4769	1196	4199	13304;13305;13306	13957;13958;13959	13958				3
STSTQKDSPLNDMIQSNDLCSK	2 Deamidation (NQ)	2470.0839	0.083948503	1146	sp|Q03001|DYST_HUMAN;sp|Q03001-9|DYST_HUMAN	yes	no	0	2	0	0	1	1									28.672	28.672	3	0.031357	5950	20190821_JH_EV_Ubi	53.768	19.935	790980	790980	0	0	0	0	0	0	0	0			4770	1146	4200	13307	13960	13960	375;991;992			1
STSVELTGDPNKTR	GlyGly (K)	1617.7958	0.79582747	877	sp|Q8TDS4|HCAR2_HUMAN;sp|P49019|HCAR3_HUMAN	yes	no	0	0	1	0	1							1			22.404	22.404	3	0.013779	4796	20190902_JH_MUT_Ubi_3	69.602	30.596	2810600	0	0	0	0	0	0	2810600	0	0			4771	877	4201	13308	13961	13961		855		1
STVFKTTIPEEEEEEEEAAGVVVEEELFHQQGTPR	GlyGly (K)	4086.9182	0.91819361	631	sp|P20700|LMNB1_HUMAN	yes	yes	0	0	1	0	1		1								47.693	47.693	4	3.6917E-05	12439	20190821_JH_MUT_Ubi	65.194	48.05	1427000	0	1427000	0	0	0	0	0	0	0			4772	631	4202	13309	13962	13962		604		1
STVHEILCKLSLEGDHSTPPSAYGSVK	Acetyl (Protein N-term);GlyGly (K)	3067.4921	0.49206423	446	sp|P07355|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	1	0	1	0	1	1	1	1			1				43.435	43.435	4	0.0001141	11394	20190821_JH_WT_Ubi	73.435	47.631	65164000	8459900	19378000	22427000	0	0	14899000	0	0	0			4773	446	4203	13310;13311;13312;13313	13963;13964;13965;13966	13966		442;446		4
STVLSLDWHPNNVLLAAGSCDFK	Unmodified	2543.2479	0.2478582	174	sp|O15143|ARC1B_HUMAN;sp|Q92747-2|ARC1A_HUMAN;sp|Q92747|ARC1A_HUMAN	yes	no	0	0	0	0	0		1	1							48.284	48.284	3	1.6326E-09	12673	20190821_JH_MUT_Ubi	121	93.518	16044000	0	3845400	12199000	0	0	0	0	0	0			4774	174	4204	13314;13315	13967;13968	13967				2
STVTIVDSKR	GlyGly (K)	1218.6568	0.65681479	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN;sp|Q8WZ42-3|TITIN_HUMAN;sp|Q8WZ42-10|TITIN_HUMAN;sp|Q8WZ42-9|TITIN_HUMAN	yes	no	0	0	1	0	1								1		28.7	28.7	3	0.0098741	7879	20190902_JH_WT_Ubi_2	94.692	16.357	6638300	0	0	0	0	0	0	0	6638300	0			4775	1705	4205	13316	13969	13969		1698		1
SVASSQPAKPTK	GlyGly (K)	1313.6939	0.69392858	1174	sp|Q07157-2|ZO1_HUMAN;sp|Q07157|ZO1_HUMAN	yes	no	0	0	1	0	1	1									16.831	16.831	3	0.019121	2784	20190821_JH_EV_Ubi	71.176	44.661	4014900	4014900	0	0	0	0	0	0	0	0			4776	1174	4206	13317	13970	13970		1164		1
SVEEIAPDPSEAKRPEPPSTSTLK	GlyGly (K)	2678.3399	0.33990391	2024	sp|Q9NS91|RAD18_HUMAN	yes	yes	0	0	1	0	2					1					29.986	29.986	3	0.026204	6928	20190902_JH_EV_Ubi_3	62.362	30.182	781490	0	0	0	0	781490	0	0	0	0			4777	2024	4207	13318	13971	13971		1927		1
SVEQTLLPLVSQITTLINHK	Unmodified	2233.2682	0.26818294	2108	sp|Q9UBT7-3|CTNL1_HUMAN;sp|Q9UBT7-2|CTNL1_HUMAN;sp|Q9UBT7|CTNL1_HUMAN	yes	no	0	0	0	0	0		1								55.281	55.281	3	0.0013253	14765	20190821_JH_MUT_Ubi	72.421	53.129	3408500	0	3408500	0	0	0	0	0	0	0			4778	2108	4208	13319	13972	13972				1
SVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR	GlyGly (K)	3672.7027	0.70272153	593	sp|P16989-2|YBOX3_HUMAN;sp|P16989|YBOX3_HUMAN;sp|P16989-3|YBOX3_HUMAN	yes	no	0	0	1	0	1			1							42.217	42.217	3	4.0209E-10	10866	20190821_JH_WT_Ubi	97.106	74.137	1753700	0	0	1753700	0	0	0	0	0	0			4779	593	4209	13320	13973	13973		582		1
SVGGSGGGSFGDNLVTR	Unmodified	1565.7434	0.74339797	390	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN	yes	no	0	0	0	0	0			1							32.706	32.706	2	0.00077309	7168	20190821_JH_WT_Ubi	97.631	45.868	11409000	0	0	11409000	0	0	0	0	0	0			4780	390	4210	13321	13974	13974				0
SVHFPGQAVGTR	Unmodified	1254.6469	0.64691881	1166	sp|Q06210-2|GFPT1_HUMAN;sp|Q06210|GFPT1_HUMAN	yes	no	0	0	0	0	0									1	25.649	25.649	3	0.024025	6668	20190902_JH_WT_Ubi_3	60.161	16.392	6286000	0	0	0	0	0	0	0	0	6286000			4781	1166	4211	13322	13975	13975				1
SVIDPVPAPVGDSHVDGAAK	Unmodified	1929.9796	0.97960549	1221	sp|Q13177|PAK2_HUMAN	yes	yes	0	0	0	0	0								1		33.863	33.863	3	0.033529	9735	20190902_JH_WT_Ubi_2	38.417	3.1129	3732700	0	0	0	0	0	0	0	3732700	0			4782	1221	4212	13323	13976	13976				1
SVINLLRNICSEAAQK	2 Deamidation (NQ)	1816.9353	0.93529784	1401	sp|Q2QD12|RPEL1_HUMAN	yes	yes	0	2	0	0	1						1				36.596	36.596	2	0.022837	9895	20190902_JH_MUT_Ubi_2	53.237	7.8045	592730	0	0	0	0	0	592730	0	0	0			4783	1401	4213	13324	13977	13977	442;1058			1
SVIVGAGYIAVEMAGILSALGSK	Oxidation (M)	2221.2028	0.20280549	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	1	0	1		1				1			54.141	54.141	3	0.0036949	15464	20190821_JH_WT_Ubi	60.761	24.164	5080500	1476200	0	3186700	0	0	0	417590	0	0			4784	376	4214	13325;13326;13327	13978;13979;13980	13980			171	1
SVKEDSNLTLQEK	GlyGly (K)	1603.8053	0.80532952	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	2	1	1		23.709	23.709	2;3	4.6891E-12	5259	20190902_JH_MUT_Ubi_2	161.87	115.07	32179000	3000700	2555300	5165900	4369300	3713000	4457500	2178000	6739200	0			4785	863	4215	13328;13329;13330;13331;13332;13333;13334;13335;13336	13981;13982;13983;13984;13985;13986;13987;13988;13989	13986		836		9
SVNESLNNLFITEEDYQALR	Unmodified	2354.139	0.13901926	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0								1	1	48.888	48.888	3	1.2272E-13	14288	20190902_JH_WT_Ubi_3	137.61	100.38	3822200	0	0	0	0	0	0	0	1269700	2552500			4786	1123	4216	13337;13338	13990;13991;13992	13992				3
SVPLAATSMLITQGLISK	Unmodified	1829.0332	0.033220969	2056	sp|Q9NX40-3|OCAD1_HUMAN;sp|Q9NX40-2|OCAD1_HUMAN;sp|Q9NX40-4|OCAD1_HUMAN;sp|Q9NX40|OCAD1_HUMAN	yes	no	0	0	0	0	0			1							51.117	51.117	3	0.0045315	14375	20190821_JH_WT_Ubi	66.152	44.618	1298600	0	0	1298600	0	0	0	0	0	0			4787	2056	4217	13339	13993	13993				1
SVPLAATSMLITQGLISK	Oxidation (M)	1845.0281	0.028135591	2056	sp|Q9NX40-3|OCAD1_HUMAN;sp|Q9NX40-2|OCAD1_HUMAN;sp|Q9NX40-4|OCAD1_HUMAN;sp|Q9NX40|OCAD1_HUMAN	yes	no	0	0	0	1	0									1	47.558	47.558	3	0.018522	13978	20190902_JH_WT_Ubi_3	51.798	24.468	2170600	0	0	0	0	0	0	0	0	2170600			4788	2056	4217	13340	13994	13994			1102	1
SVSEIQLMHNLGK	Deamidation (NQ)	1455.7392	0.73916421	386	sp|P01270|PTHY_HUMAN	yes	yes	0	1	0	0	0		1								42.685	42.685	3	0.031519	10569	20190821_JH_MUT_Ubi	87.713	34.923	1386100	0	1386100	0	0	0	0	0	0	0			4789	386	4218	13341	13995	13995	811			1
SVSNGTAKPATSENFDEDLK	GlyGly (K);Deamidation (NQ)	2224.0132	0.013150046	1792	sp|Q96K49-2|TM87B_HUMAN;sp|Q96K49|TM87B_HUMAN	yes	no	0	1	1	0	1									1	29.649	29.649	3	0.0053497	7981	20190902_JH_WT_Ubi_3	86.189	39.852	3674100	0	0	0	0	0	0	0	0	3674100			4790	1792	4219	13342	13996	13996	573	1758		1
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	1078	sp|P63104|1433Z_HUMAN	yes	yes	0	0	0	0	0	1	1								25.341	25.341	2	1.983E-47	4298	20190821_JH_MUT_Ubi	208.51	120.36	20926000	16098000	4827900	0	0	0	0	0	0	0			4791	1078	4220	13343;13344	13997;13998	13998				2
SVTGEIVLITGAGHGIGR	Unmodified	1735.9581	0.95808219	1633	sp|Q8NBQ5|DHB11_HUMAN	yes	yes	0	0	0	0	0	1		1							39.934	39.934	3	0.00063445	10186	20190821_JH_EV_Ubi	83.633	64.055	17893000	3667200	0	14226000	0	0	0	0	0	0			4792	1633	4221	13345;13346	13999;14000	13999				2
SVTVVEDDEDEDGDDLLHHHHVSGSR	Unmodified	2898.2652	0.26523542	391	sp|P02545-2|LMNA_HUMAN	yes	yes	0	0	0	0	0		1						1	1	27.763	27.763	4;5	0.02491	7225	20190902_JH_WT_Ubi_3	36.504	16.065	18593000	0	1729700	0	0	0	0	0	8739600	8123200			4793	391	4222	13347;13348;13349	14001;14002;14003	14003				3
SVTYTLAQLPCASMALQILWEAAR	Oxidation (M)	2708.3666	0.36659313	148	sp|O14684|PTGES_HUMAN	yes	yes	0	0	0	1	0			1							56.518	56.518	3	0.0069867	16153	20190821_JH_WT_Ubi	52.464	12.784	1010700	0	0	1010700	0	0	0	0	0	0			4794	148	4223	13350	14004	14004			66	1
SVVEFLQGYIGVPHGGFPEPFR	Unmodified	2431.2325	0.23246614	526	sp|P11498|PYC_HUMAN	yes	yes	0	0	0	0	0			1					1		52.751	52.751	3	0.00021235	14899	20190821_JH_WT_Ubi	79.462	54.587	3504400	0	0	1360700	0	0	0	0	2143700	0			4795	526	4224	13351;13352	14005;14006	14005				2
SVVLMSHLGRPDGVPMPDK	2 Oxidation (M)	2066.0289	0.028880647	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	2	1		1			1	1		1	1	28.884	28.884	3	0.0013722	7605	20190902_JH_WT_Ubi_3	83.894	61.419	75278000	0	2501300	0	0	3298800	7036900	0	34165000	28276000			4796	383	4225	13353;13354;13355;13356;13357	14007;14008;14009;14010;14011	14011			179;180	5
SVVLMSHLGRPDGVPMPDK	Unmodified	2034.0391	0.039051403	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	0	1		1	1							34.955	34.955	3	1.5291E-08	7925	20190821_JH_WT_Ubi	130.64	42.003	39546000	0	4858600	34688000	0	0	0	0	0	0			4797	383	4225	13358;13359	14012;14013	14013				2
SVVLMSHLGRPDGVPMPDK	Oxidation (M)	2050.034	0.033966025	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	1	1			1			1		1		31.589	31.589	3	0.0093458	7777	20190902_JH_MUT_Ubi_2	70.802	43.773	25307000	0	0	11750000	0	0	2113700	0	11443000	0			4798	383	4225	13360;13361;13362	14014;14015;14016	14014			179;180	3
SVVPGGGAVEAALSIYLENYATSMGSR	Oxidation (M)	2714.3221	0.32214536	607	sp|P17987|TCPA_HUMAN	yes	yes	0	0	0	1	0		1				1				55.266	55.266	3	0.0013032	14760	20190821_JH_MUT_Ubi	60.814	41.604	1493700	0	1157300	0	0	0	336410	0	0	0			4799	607	4226	13363;13364	14017;14018	14017			374	2
SVYAHFPINVVIQENGSLVEIR	Deamidation (NQ)	2484.3013	0.30127398	757	sp|P32969|RL9_HUMAN	yes	yes	0	1	0	0	0		1	1							49.15	49.15	3	1.0618E-06	12947	20190821_JH_MUT_Ubi	105.32	55.331	4056700	0	1285900	2770900	0	0	0	0	0	0			4800	757	4227	13365;13366	14019;14020;14021	14020	268			3
SWFNKLLNNSNVLQSK	GlyGly (K);Deamidation (NQ)	2006.0221	0.022139011	60		yes	no	0	1	1	0	1	1									52.629	52.629	3	0.013508	14155	20190821_JH_EV_Ubi	98.676	8.2424	3161900	3161900	0	0	0	0	0	0	0	0	+		4801	60	4228	13367	14022	14022	19	61		1
SWHDVQVSSAYVKTSEK	GlyGly (K)	2063.9912	0.99123281	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN	yes	no	0	0	1	0	1			1							28.339	28.339	3	0.0047162	5793	20190821_JH_WT_Ubi	72.207	29.965	4067600	0	0	4067600	0	0	0	0	0	0			4802	202	4229	13368	14023	14023		183		1
SWQDELAQQAEEGSAR	Unmodified	1803.8024	0.80236941	1549	sp|Q86UE4|LYRIC_HUMAN	yes	yes	0	0	0	0	0									1	38.577	38.577	2	0.0041789	10997	20190902_JH_WT_Ubi_3	101.72	46.322	0	0	0	0	0	0	0	0	0	0			4803	1549	4230	13369	14024	14024				1
SWVNQMESQTGEASKLPYDVTPEQALAHEEVK	Oxidation (M);GlyGly (K)	3730.7421	0.74208392	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	1	1	1	1	1	1	1		1			1	38.515	38.515	4	3.5626E-07	9511	20190902_JH_EV_Ubi_2	86.376	40.419	37939000	10823000	3361700	8297000	4515100	0	5251100	0	0	5690400			4804	863	4231	13370;13371;13372;13373;13374;13375	14025;14026;14027;14028;14029;14030;14031	14026		837	545	7
SWVNQMESQTGEASKLPYDVTPEQALAHEEVK	GlyGly (K)	3714.7472	0.7471693	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	1	0	1		1								42.007	42.007	4	0.0010935	10319	20190821_JH_MUT_Ubi	50.767	20.164	3586900	0	3586900	0	0	0	0	0	0	0			4805	863	4231	13376	14032	14032		837		1
SYALDGKEEAEAALEK	GlyGly (K)	1836.8741	0.87413737	1831	sp|Q96TC7-2|RMD3_HUMAN;sp|Q96TC7|RMD3_HUMAN	yes	no	0	0	1	0	1		1	1			1	1			32.87	32.87	3	0.00071247	7280	20190821_JH_WT_Ubi	96.773	57.264	11581000	0	1198800	6436400	0	0	1703600	2241900	0	0			4806	1831	4232	13377;13378;13379;13380	14033;14034;14035;14036	14036		1791		4
SYELPDGQVITIGNER	Unmodified	1789.8846	0.88464248	1000;1087;1094;1490;1420	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|Q9BYX7|ACTBM_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN;sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN	no	no	0	0	0	0	0			2			2	1	1	1	42.964	42.964	2;3	6.0112E-06	12508	20190902_JH_WT_Ubi_3	121.13	72.302	576780000	0	0	417470000	0	0	69603000	76257000	5784800	7666900			4807	1000;1087;1094;1420;1490	4233	13381;13382;13383;13384;13385;13386;13387	14037;14038;14039;14040;14041;14042;14043;14044;14045	14045				9
SYELPDGQVITIGNER	Deamidation (NQ)	1790.8687	0.86865806	1000;1087;1094;1490;1420	sp|P60709|ACTB_HUMAN;sp|P63267-2|ACTH_HUMAN;sp|Q9BYX7|ACTBM_HUMAN;sp|P63261|ACTG_HUMAN;sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN;sp|Q562R1|ACTBL_HUMAN;sp|Q6S8J3|POTEE_HUMAN;sp|A5A3E0|POTEF_HUMAN	no	no	0	1	0	0	0								1	1	43.645	43.645	2	7.9037E-25	13145	20190902_JH_WT_Ubi_2	174.95	116.27	25724000	0	0	0	0	0	0	0	11944000	13780000			4808	1000;1087;1094;1420;1490	4233	13388;13389	14046;14047	14046	959			2
SYGPAPGAGHVQEESNLSLQALESR	Unmodified	2596.2518	0.25175761	1219	sp|Q13155|AIMP2_HUMAN	yes	yes	0	0	0	0	0	1	1		1	1	1	1		1	36.802	36.802	3	1.9306E-15	9915	20190902_JH_MUT_Ubi_2	126.55	92.284	13730000	2846000	1789500	0	0	1318100	1595500	1042600	0	5138400			4809	1219	4234	13390;13391;13392;13393;13394;13395;13396	14048;14049;14050;14051;14052;14053;14054	14052				7
SYIEGYVPSQADVAVFEAVSSPPPADLCHALR	Unmodified	3444.666	0.66600585	671	sp|P24534|EF1B_HUMAN	yes	yes	0	0	0	0	0			1			1		1	1	51.014	51.014	3	0.0003504	14347	20190821_JH_WT_Ubi	57.648	21.417	13424000	0	0	8086100	0	0	603430	0	2329500	2405200			4810	671	4235	13397;13398;13399;13400	14055;14056;14057;14058;14059;14060	14057				6
SYIYSGSHDGHINYWDSETGENDSFAGK	Unmodified	3135.3119	0.31185126	268	sp|O75083|WDR1_HUMAN;sp|O75083-3|WDR1_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	35.161	35.161	4	0.00017161	8074	20190821_JH_WT_Ubi	68.97	59.637	29276000	2470100	1772200	11196000	0	0	1867000	1883700	6040900	4046000			4811	268	4236	13401;13402;13403;13404;13405;13406;13407	14061;14062;14063;14064;14065;14066;14067	14065				7
SYLEPLQMLTEASVK	Oxidation (M)	1723.8702	0.87023797	58		yes	no	0	0	0	1	0							1			16.378	16.378	3	0.02056	3530	20190902_JH_MUT_Ubi_3	58.116	17.388	1453400	0	0	0	0	0	0	1453400	0	0	+		4812	58	4237	13408	14068	14068			35	1
SYPFVLSANLHGGSLVVNYPFDDDEQGLATYSK	Deamidation (NQ)	3603.7046	0.70455943	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	1	0	0	0			1							50.98	50.98	3	0.0030537	14326	20190821_JH_WT_Ubi	58.861	40.505	0	0	0	0	0	0	0	0	0	0			4813	308	4238	13409	14069	14069	102			1
TAAAAADVNGFKPLSGNELK	GlyGly (K)	2087.0647	0.064732107	1135	sp|Q01804-5|OTUD4_HUMAN	yes	yes	0	0	1	0	1			1							50.125	50.125	3	0.013147	14059	20190821_JH_WT_Ubi	55.437	12.407	3089100	0	0	3089100	0	0	0	0	0	0			4814	1135	4239	13410	14070	14070		1131		1
TAAENDFVVLKK	GlyGly (K)	1447.7671	0.76709352	11	sp|P19013|K2C4_HUMAN;CON__P19013	no	no	0	0	1	0	1		1		1		1	1			29.261	29.261	3	1.041E-17	5752	20190821_JH_MUT_Ubi	180.97	101.48	12756000	0	1626900	0	1879000	0	5084300	4166000	0	0		+	4815	11	4240	13411;13412;13413;13414	14071;14072;14073;14074	14072		33		4
TAAENEFVTLK	Unmodified	1221.6241	0.62411768	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446;sp|P12035|K2C3_HUMAN;CON__P12035	yes	no	0	0	0	0	0		1			1					33.197	33.197	2	0.0013647	7136	20190821_JH_MUT_Ubi	143.4	79.19	11150000	0	3191200	0	0	7958800	0	0	0	0		+	4816	3	4241	13415;13416	14075;14076	14076				0
TAAENEFVTLKK	GlyGly (K)	1463.762	0.76200815	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446;sp|P12035|K2C3_HUMAN;CON__P12035	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	27.821	27.821	3	8.4145E-25	7686	20190902_JH_WT_Ubi_2	190.66	112.15	245890000	20847000	15119000	22769000	22915000	29895000	18067000	23815000	35406000	57059000		+	4817	3	4242	13417;13418;13419;13420;13421;13422;13423;13424;13425	14077;14078;14079;14080;14081;14082;14083;14084;14085	14084		6;7		9
TAAENEFVVLKK	Unmodified	1347.7398	0.73981614	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	1	1	1		1	1	1	1			29.146	29.146	3	1.2183E-05	6627	20190902_JH_MUT_Ubi_3	142.19	10.165	35846000	5828800	3927300	0	5686300	4232300	7635400	8535600	0	0		+	4818	8;19	4243	13426;13427;13428;13429;13430;13431	14086;14087;14088;14089;14090;14091	14091				6
TAAKGEAAAERPGEAAVASSPSK	GlyGly (K)	2269.1299	0.12985156	718	sp|P29966|MARCS_HUMAN	yes	yes	0	0	1	0	2		1	1			1	1	1	1	20.651	20.651	3;4	0.00099266	4355	20190902_JH_MUT_Ubi_3	70.02	44.412	30719000	0	914360	4404400	0	0	858110	1374000	13344000	9823900			4819	718	4244	13432;13433;13434;13435;13436;13437	14092;14093;14094;14095;14096;14097	14094		699;701		6
TAASGIPYHSEVPVSLK	Unmodified	1754.9203	0.9202997	1129	sp|Q01082|SPTB2_HUMAN	yes	yes	0	0	0	0	0		1				1	1		1	33.375	33.375	3	0.00061381	8066	20190902_JH_MUT_Ubi_3	89.466	61.7	26047000	0	3969900	0	0	0	8554600	4253800	0	9268400			4820	1129	4245	13438;13439;13440;13441	14098;14099;14100;14101	14100				4
TAASGVEANSRPLDHAQPPSSLVIDK	Unmodified	2659.3566	0.35655703	106	sp|O00151|PDLI1_HUMAN	yes	yes	0	0	0	0	1									1	31.465	31.465	4	0.024405	8564	20190902_JH_WT_Ubi_3	41.166	14.929	6860900	0	0	0	0	0	0	0	0	6860900			4821	106	4246	13442	14102	14102				1
TAATAGIIGWVYGGIPAFIHAK	Unmodified	2213.1997	0.19970945	2001	sp|Q9NPL8|TIDC1_HUMAN	yes	yes	0	0	0	0	0			1							52.903	52.903	3	0.0003645	14972	20190821_JH_WT_Ubi	74.993	46.881	1711800	0	0	1711800	0	0	0	0	0	0			4822	2001	4247	13443	14103	14103				1
TAAVSERIHEQVRDR	Unmodified	1765.9183	0.91834264	1596	sp|Q8IZ73-2|RUSD2_HUMAN;sp|Q8IZ73|RUSD2_HUMAN	yes	no	0	0	0	0	2	1									16.9	16.9	4	0.036659	2783	20190821_JH_EV_Ubi	46.797	6.3197	121260	121260	0	0	0	0	0	0	0	0			4823	1596	4248	13444	14104	14104				0
TAEEVIKNTEIVPCVLK	2 GlyGly (K)	2170.1304	0.13036883	1465	sp|Q68DQ2|CRBG3_HUMAN	yes	yes	0	0	2	0	1			1							50.955	50.955	2	0.022355	14308	20190821_JH_WT_Ubi	44.614	6.6742	2902500	0	0	2902500	0	0	0	0	0	0			4824	1465	4249	13445	14105	14105		1476;1477		1
TAEPAESSVPPVTSIGIDNLGLKLEENLQETHSAVL	GlyGly (K)	3871.9691	0.96910697	1583	sp|Q8IXU6-3|S35F2_HUMAN;sp|Q8IXU6|S35F2_HUMAN	yes	no	0	0	1	0	1						1				53.417	53.417	3	0.005784	14920	20190902_JH_MUT_Ubi_2	40.064	12.297	824300	0	0	0	0	0	824300	0	0	0			4825	1583	4250	13446	14106	14106		1584		1
TAFDDAIAELDTLNEDSYK	Unmodified	2129.9641	0.96407459	1034	sp|P61981|1433G_HUMAN	yes	yes	0	0	0	0	0			1					1	1	53.355	53.355	2;3	5.1824E-09	15079	20190821_JH_WT_Ubi	125.96	94.664	15750000	0	0	4925100	0	0	0	0	8228900	2595900			4826	1034	4251	13447;13448;13449	14107;14108;14109	14107				2
TAFDEAIAELDTLNEDSYK	Unmodified	2143.9797	0.97972465	695	sp|P27348|1433T_HUMAN	yes	yes	0	0	0	0	0			1	1	1		1	1	1	53.513	53.513	3	1.1398E-48	15453	20190902_JH_WT_Ubi_3	196.65	157.77	31279000	0	0	8465200	485310	1212500	0	1585700	9304600	10226000			4827	695	4252	13450;13451;13452;13453;13454;13455	14110;14111;14112;14113;14114;14115	14115				6
TAFDEAIAELDTLNEESYK	Unmodified	2157.9954	0.99537472	749	sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN	yes	no	0	0	0	0	0		1	1	1	1	1	1	1	1	53.527	53.527	3	3.3804E-49	13674	20190902_JH_MUT_Ubi_3	203.92	134.94	32995000	0	1392000	8128200	923710	1736100	1632700	2076200	8709800	8395800			4828	749	4253	13456;13457;13458;13459;13460;13461;13462;13463	14116;14117;14118;14119;14120;14121;14122;14123	14120				8
TAFDEAIAELDTLSEESYK	Unmodified	2130.9845	0.98447568	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	54.86	54.86	3	1.4955E-86	15737	20190902_JH_WT_Ubi_3	232.01	177.59	79272000	1983000	3117800	19150000	1810400	1927600	7426700	3592200	15105000	25159000			4829	1078;1079	4254	13464;13465;13466;13467;13468;13469;13470;13471;13472	14124;14125;14126;14127;14128;14129;14130;14131;14132	14132				9
TAKAMDEMKNLK	Oxidation (M);GlyGly (K);Deamidation (NQ)	1509.7167	0.71671421	1424	sp|Q5CZC0|FSIP2_HUMAN;sp|Q5CZC0-2|FSIP2_HUMAN	yes	no	0	1	1	1	2				1						33.044	33.044	2	0.01025	7886	20190902_JH_EV_Ubi_2	74.841	13.68	1222500	0	0	0	1222500	0	0	0	0	0			4830	1424	4255	13473	14133	14133	450	1441	874	0
TALAEAELEYNPEHVSR	Unmodified	1927.9276	0.92756992	2027	sp|Q9NSE4|SYIM_HUMAN	yes	yes	0	0	0	0	0			1							33.799	33.799	3	0.036854	7590	20190821_JH_WT_Ubi	39.427	0.42207	6654800	0	0	6654800	0	0	0	0	0	0			4831	2027	4256	13474	14134	14134				1
TALHVAAAEGHVEVVK	Unmodified	1629.8839	0.88385462	324	sp|O94925|GLSK_HUMAN	yes	yes	0	0	0	0	0			1							26.575	26.575	4	0.02308	5287	20190821_JH_WT_Ubi	46.68	22.426	1424600	0	0	1424600	0	0	0	0	0	0			4832	324	4257	13475	14135	14135				1
TALVANTSNMPVAAR	Oxidation (M)	1530.7824	0.78242601	801	sp|P38606-2|VATA_HUMAN;sp|P38606|VATA_HUMAN	yes	no	0	0	0	1	0			1							27.619	27.619	2	0.00045818	5570	20190821_JH_WT_Ubi	112.84	67.247	703940	0	0	703940	0	0	0	0	0	0			4833	801	4258	13476	14136	14136			511	0
TAMPAVMQMLQSTLR	Oxidation (M);Deamidation (NQ)	1693.8201	0.82013343	1973	sp|Q9H9B1-2|EHMT1_HUMAN	yes	yes	0	1	0	1	0		1								36.69	36.69	2	0.028634	8381	20190821_JH_MUT_Ubi	45.879	14.282	645530	0	645530	0	0	0	0	0	0	0			4834	1973	4259	13477	14137	14137	1255		1073	1
TAMSTPHVAEPAENEQDEQDENGAEASADLR	Oxidation (M)	3327.407	0.40695021	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	0	1	0	1	1	1		1			1	1	29.202	29.202	3	1.2135E-26	6182	20190821_JH_EV_Ubi	145.19	110.78	15780000	1123000	564180	3218500	0	1348000	0	0	5901400	3624900			4835	686	4260	13478;13479;13480;13481;13482;13483	14138;14139;14140;14141;14142;14143	14138			426	6
TAMSTPHVAEPAENEQDEQDENGAEASADLR	Oxidation (M);Deamidation (NQ)	3328.391	0.3909658	686	sp|P26038|MOES_HUMAN	yes	yes	0	1	0	1	0	1		1	1		1	1	2	1	29.655	29.655	3	5.4534E-73	6196	20190821_JH_WT_Ubi	198.85	171.31	29679000	1831200	0	4564700	1690000	0	1164300	989150	11953000	7486500			4836	686	4260	13484;13485;13486;13487;13488;13489;13490;13491	14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154	14150	242;243;881		426	10
TAMSTPHVAEPAENEQDEQDENGAEASADLR	Deamidation (NQ)	3312.3961	0.39605118	686	sp|P26038|MOES_HUMAN	yes	yes	0	1	0	0	0		1						1	1	32.031	32.031	3	2.1009E-07	8689	20190902_JH_WT_Ubi_3	93.505	79.609	5421400	0	531480	0	0	0	0	0	2728300	2161700			4837	686	4260	13492;13493;13494	14155;14156;14157;14158	14158	242;243;881			4
TAPVQAPPAPVIVTETPEPAMTSGVYRPPGAR	Oxidation (M)	3272.6863	0.68634737	2157	sp|Q9UKY7|CDV3_HUMAN;sp|Q9UKY7-2|CDV3_HUMAN;sp|Q9UKY7-3|CDV3_HUMAN	yes	no	0	0	0	1	1									1	39.645	39.645	3	0.0093526	11375	20190902_JH_WT_Ubi_3	48.854	34.217	4716100	0	0	0	0	0	0	0	0	4716100			4838	2157	4261	13495	14159	14159			1129	1
TASNVEEAFINTAKEIYEK	GlyGly (K)	2270.1067	0.1066565	1008	sp|P61019-2|RAB2A_HUMAN;sp|P61019|RAB2A_HUMAN	yes	no	0	0	1	0	1	1							1		45.783	45.783	3	0.0007277	12323	20190821_JH_EV_Ubi	82.121	32.898	4020900	1498100	0	0	0	0	0	0	2522800	0			4839	1008	4262	13496;13497	14160;14161	14160		997		2
TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR	Deamidation (NQ)	3456.7121	0.71210442	1154	sp|Q04637-6|IF4G1_HUMAN;sp|Q04637-7|IF4G1_HUMAN;sp|Q04637-5|IF4G1_HUMAN;sp|Q04637-4|IF4G1_HUMAN;sp|Q04637-3|IF4G1_HUMAN;sp|Q04637|IF4G1_HUMAN;sp|Q04637-8|IF4G1_HUMAN;sp|Q04637-9|IF4G1_HUMAN	yes	no	0	1	0	0	1									1	39.548	39.548	3	0.0034626	11338	20190902_JH_WT_Ubi_3	52.669	24.264	1271600	0	0	0	0	0	0	0	0	1271600			4840	1154	4263	13498	14162	14162	381			0
TATESFASDPILYRPVAVALDTK	Unmodified	2464.285	0.28495522	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	0	0	1	1	1	1	1	1	1	1	1	1	45.213	45.213	3	1.8303E-11	11397	20190902_JH_EV_Ubi_3	132.5	104.15	1465800000	93965000	95890000	557060000	35153000	47377000	88684000	87677000	234690000	225300000			4841	556	4264	13499;13500;13501;13502;13503;13504;13505;13506;13507	14163;14164;14165;14166;14167;14168;14169;14170;14171	14165				9
TATESFASDPILYRPVAVALDTKGPEIR	GlyGly (K)	3130.6299	0.62987835	556	sp|P14618|KPYM_HUMAN;sp|P14618-2|KPYM_HUMAN;sp|P14618-3|KPYM_HUMAN	yes	no	0	0	1	0	2	1		1							43.892	43.892	4	0.000332	11667	20190821_JH_EV_Ubi	64.962	41.677	20537000	4658400	0	15878000	0	0	0	0	0	0			4842	556	4265	13508;13509	14172;14173	14172		548		2
TATPQQAQEVHEK	Unmodified	1465.7161	0.71612058	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	0	0	0	1	1			1	1	1	1	1	17.471	17.471	3	0.00036594	4321	20190902_JH_WT_Ubi_2	112.84	83.295	277500000	8547800	14987000	0	0	15339000	10876000	17956000	110100000	99690000			4843	997	4266	13510;13511;13512;13513;13514;13515;13516	14174;14175;14176;14177;14178;14179;14180	14179				7
TATSLAEGLSLVVSPDSIHSVAPENEGR	Unmodified	2835.425	0.42503053	1876	sp|Q9BTV4|TMM43_HUMAN	yes	yes	0	0	0	0	0	1		1						1	45.999	45.999	3	0.00027056	12502	20190821_JH_EV_Ubi	66.401	42.12	7101600	1332500	0	4174600	0	0	0	0	0	1594500			4844	1876	4267	13517;13518;13519	14181;14182;14183	14181				3
TAVHAGNINFKWDPK	Acetyl (Protein N-term);GlyGly (K)	1852.922	0.92203104	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN	yes	no	1	0	1	0	1		1				1	1			36.358	36.358	3	0.0088254	9765	20190902_JH_MUT_Ubi_2	66.674	11.815	11129000	0	4462600	0	0	0	3529000	3137500	0	0			4845	769	4268	13520;13521;13522	14184;14185;14186	14185		753		3
TAVVVGTITDDVR	Unmodified	1344.7249	0.72489436	1171	sp|Q07020-2|RL18_HUMAN;sp|Q07020|RL18_HUMAN	yes	no	0	0	0	0	0								1	1	35.829	35.829	2	8.6966E-06	9998	20190902_JH_WT_Ubi_3	135.8	78.246	12033000	0	0	0	0	0	0	0	6170600	5862500			4846	1171	4269	13523;13524	14187;14188	14188				1
TCATVTIGGINIAEALVSK	Unmodified	1917.0241	0.024112846	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	0	0	1	1								50.394	50.394	3	3.6874E-06	13676	20190821_JH_EV_Ubi	111.09	68.78	2174100	1619000	555140	0	0	0	0	0	0	0			4847	1518	4270	13525;13526	14189;14190	14189				2
TCAYTNHTVLPEALER	Unmodified	1873.8992	0.89924668	523	sp|P11216|PYGB_HUMAN	no	no	0	0	0	0	0		1								32.897	32.897	3	0.03171	6911	20190821_JH_MUT_Ubi	44.252	1.4672	642810	0	642810	0	0	0	0	0	0	0			4848	523	4271	13527	14191	14191				1
TCEEHQLCVVAVLPHILDTGAAGR	Unmodified	2645.3054	0.30538986	1327	sp|Q15084-3|PDIA6_HUMAN;sp|Q15084|PDIA6_HUMAN;sp|Q15084-4|PDIA6_HUMAN;sp|Q15084-5|PDIA6_HUMAN;sp|Q15084-2|PDIA6_HUMAN	yes	no	0	0	0	0	0	1	1	1				1	1		43.94	43.94	4	0.00076022	11715	20190821_JH_EV_Ubi	67.864	42.194	21590000	5200100	4512800	8342600	0	0	0	2228500	1306200	0			4849	1327	4272	13528;13529;13530;13531;13532	14192;14193;14194;14195;14196	14192				3
TCKFTQEDEQLVQEKMEALK	Oxidation (M);3 GlyGly (K)	2812.3008	0.30075799	2091	sp|Q9P2E3|ZNFX1_HUMAN	yes	yes	0	0	3	1	2			1							42.159	42.159	3	0.03154	10834	20190821_JH_WT_Ubi	45.257	10.464	0	0	0	0	0	0	0	0	0	0			4850	2091	4273	13533	14197	14197			1115	1
TCLITFKPGAFIPGAPVQPVVLR	Unmodified	2480.3978	0.39775733	1651	sp|Q8NF37|PCAT1_HUMAN	yes	yes	0	0	0	0	1	1	1			1	1				49.278	49.278	3	2.3724E-05	14091	20190902_JH_MUT_Ubi_2	91.64	69.003	6030700	3383700	1597800	0	0	0	1049100	0	0	0			4851	1651	4274	13534;13535;13536;13537	14198;14199;14200;14201	14201				4
TCNCETEDYGEK	Unmodified	1504.5446	0.54462308	1128	sp|Q00839|HNRPU_HUMAN;sp|Q00839-2|HNRPU_HUMAN	yes	no	0	0	0	0	0						1				19.699	19.699	2	0.0087551	4327	20190902_JH_MUT_Ubi_2	87.667	48.649	5697500	0	0	0	0	0	5697500	0	0	0			4852	1128	4275	13538	14202	14202				1
TCVADESHAGCEK	Unmodified	1462.5817	0.58167729	5	CON__P02769	yes	yes	0	0	0	0	0			1							16.647	16.647	3	0.021974	3024	20190821_JH_WT_Ubi	59.116	27.968	2337600	0	0	2337600	0	0	0	0	0	0		+	4853	5	4276	13539	14203	14203				1
TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK	Unmodified	3621.5867	0.58668872	1723	sp|Q92804-2|RBP56_HUMAN;sp|Q92804|RBP56_HUMAN	yes	no	0	0	0	0	0			1					1		53.768	53.768	3	4.424E-07	15278	20190821_JH_WT_Ubi	77.504	54.259	5182900	0	0	3776700	0	0	0	0	1406200	0			4854	1723	4277	13540;13541	14204;14205	14204				2
TDAPQPDVKEEEEEKEEEK	Unmodified	2258.0074	0.0073959665	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	0	0	2	1			1				1	1	21.93	21.93	3	5.3184E-06	5689	20190902_JH_WT_Ubi_2	122.29	96.838	7057600	552530	0	0	1026200	0	0	0	2980800	2498100			4855	704	4278	13542;13543;13544;13545	14206;14207;14208;14209	14208				4
TDDCHPWVLPVVK	Unmodified	1564.7708	0.77079869	598	sp|P17174|AATC_HUMAN;sp|P17174-2|AATC_HUMAN	yes	no	0	0	0	0	0			1						1	39.255	39.255	3	0.017673	9693	20190821_JH_WT_Ubi	62.799	32.316	3641800	0	0	2064800	0	0	0	0	0	1577100			4856	598	4279	13546;13547	14210;14211	14210				2
TDDEVVQREEEAIQLDGLNASQIR	Unmodified	2727.3311	0.33113014	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	1	1	1	1					1		42.99	42.99	3	1.7451E-12	12912	20190902_JH_WT_Ubi_2	133.74	92.033	19197000	2496000	847900	11059000	0	0	0	0	4794200	0			4857	557	4280	13548;13549;13550;13551	14212;14213;14214;14215	14215				4
TDEAAFQKLMSNLDSNR	GlyGly (K)	2052.9535	0.9534671	689	sp|P26447|S10A4_HUMAN	yes	yes	0	0	1	0	1		1								42.971	42.971	3	0.0079161	10683	20190821_JH_MUT_Ubi	66.965	31.325	693910	0	693910	0	0	0	0	0	0	0			4858	689	4281	13552	14216	14216		677		1
TDEFQLHTNVNDGTEFGGSIYQK	Unmodified	2599.1827	0.18267499	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	0	0	1	1	1				1	1	1	38.521	38.521	3	2.1369E-23	11414	20190902_JH_WT_Ubi_2	158.33	112.49	65094000	5318900	4195200	30595000	0	0	0	2745300	16281000	5959600			4859	640	4282	13553;13554;13555;13556;13557;13558	14217;14218;14219;14220;14221;14222	14221				5
TDGALLVNAMFFK	Oxidation (M)	1441.7275	0.72753689	907	sp|P50454|SERPH_HUMAN	yes	yes	0	0	0	1	0			1							45.752	45.752	2	0.014654	12309	20190821_JH_WT_Ubi	92.239	41.147	2472200	0	0	2472200	0	0	0	0	0	0			4860	907	4283	13559	14223	14223			570	1
TDGCHAYLSK	Unmodified	1150.5077	0.50770771	1132	sp|Q01518|CAP1_HUMAN;sp|Q01518-2|CAP1_HUMAN	yes	no	0	0	0	0	0			1			1		1	1	18.435	18.435	3	0.013595	4517	20190902_JH_WT_Ubi_3	75.652	40.474	26536000	0	0	5013500	0	0	1363000	0	11330000	8829200			4861	1132	4284	13560;13561;13562;13563	14224;14225;14226;14227	14227				4
TDGKIVQYECEGDTCQEEK	GlyGly (K)	2402.0002	0.0002188736	1534	sp|Q7Z569-2|BRAP_HUMAN;sp|Q7Z569|BRAP_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	26.247	26.247	3	1.2922E-120	6007	20190902_JH_MUT_Ubi_2	261.06	205.21	83035000	6735500	10138000	13822000	4271600	0	7623600	15400000	14900000	10144000			4862	1534	4285	13564;13565;13566;13567;13568;13569;13570;13571	14228;14229;14230;14231;14232;14233;14234;14235;14236;14237	14233		1525		10
TDGKIVQYECEGDTCQEEK	GlyGly (K);Deamidation (NQ)	2402.9842	0.98423446	1534	sp|Q7Z569-2|BRAP_HUMAN;sp|Q7Z569|BRAP_HUMAN	yes	no	0	1	1	0	1						1		1		26.789	26.789	3	2.4203E-12	6161	20190902_JH_MUT_Ubi_2	136.33	114.52	2781400	0	0	0	0	0	1076600	0	1704800	0			4863	1534	4285	13572;13573	14238;14239	14238	1101;1102	1525		2
TDGKVFQFLNAK	GlyGly (K)	1480.7674	0.76742787	1110	sp|P83731|RL24_HUMAN	yes	yes	0	0	1	0	1		1				1	1	1	1	35.809	35.809	3	2.1444E-12	9525	20190902_JH_MUT_Ubi_2	169.52	141.09	19780000	0	1690600	0	0	0	3239500	1692500	6743700	6413700			4864	1110	4286	13574;13575;13576;13577;13578	14240;14241;14242;14243;14244	14241		1104		5
TDHLSWEWNLTIK	Unmodified	1641.8151	0.81510635	934	sp|P52565|GDIR1_HUMAN;sp|P52565-2|GDIR1_HUMAN	yes	no	0	0	0	0	0		1	1							43.393	43.393	3	0.003119	11319	20190821_JH_WT_Ubi	89.44	37.666	8295400	0	2092100	6203300	0	0	0	0	0	0			4865	934	4287	13579;13580	14245;14246	14246				2
TDHPEIGEGK	Unmodified	1081.504	0.50400254	1395	sp|Q16891-2|MIC60_HUMAN;sp|Q16891|MIC60_HUMAN;sp|Q16891-3|MIC60_HUMAN;sp|Q16891-4|MIC60_HUMAN	yes	no	0	0	0	0	0									1	17.556	17.556	3	0.0030113	4273	20190902_JH_WT_Ubi_3	102.06	50.726	878020	0	0	0	0	0	0	0	0	878020			4866	1395	4288	13581	14247	14247				1
TDHPEIGEGKPTPALSEEASSSSIR	Unmodified	2594.246	0.24600353	1395	sp|Q16891-2|MIC60_HUMAN;sp|Q16891|MIC60_HUMAN	yes	no	0	0	0	0	1			1							29.115	29.115	4	0.0070286	6039	20190821_JH_WT_Ubi	51.568	31.09	3940800	0	0	3940800	0	0	0	0	0	0			4867	1395	4289	13582	14248	14248				1
TDKAEVVNGYEAK	GlyGly (K);Deamidation (NQ)	1537.726	0.72601657	1595	sp|Q8IZ07|AN13A_HUMAN	yes	yes	0	1	1	0	1	1				1					22.878	22.878	2;3	0.0095185	4102	20190821_JH_EV_Ubi	88.803	40.009	2227000	485390	0	0	0	1741600	0	0	0	0			4868	1595	4290	13583;13584	14249;14250	14249	519	1589		2
TDLEMQIEGLK	Oxidation (M)	1291.633	0.63296781	7;477	CON__P08727;sp|P08779|K1C16_HUMAN;CON__P08779;sp|P08727|K1C19_HUMAN	no	no	0	0	0	1	0	1		1							38.98	38.98	2	0.003767	10264	20190821_JH_EV_Ubi	97.813	52.445	76291000	993530	0	75298000	0	0	0	0	0	0		+	4869	7;477	4291	13585;13586	14251;14252	14251			12	0
TDLEMQIEGLKEELAYLK	Oxidation (M);GlyGly (K)	2252.1246	0.12461475	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	1	1		1	1			1	1	1		52.508	52.508	3	4.9526E-20	14850	20190821_JH_WT_Ubi	164.8	54.488	8414200	0	927020	2732800	0	0	571180	738450	3444700	0		+	4870	7;477	4292	13587;13588;13589;13590;13591	14253;14254;14255;14256;14257;14258	14256		19	12	6
TDLEMQIEGLKEELAYLK	GlyGly (K)	2236.1297	0.12970013	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	0	1			1							52.333	52.333	3	0.0033594	14793	20190821_JH_WT_Ubi	72.187	25.85	2296700	0	0	2296700	0	0	0	0	0	0		+	4871	7;477	4292	13592	14259	14259		19		1
TDLHAFENLEIIR	Unmodified	1569.8151	0.81510635	382	sp|P00533|EGFR_HUMAN;sp|P00533-4|EGFR_HUMAN;sp|P00533-3|EGFR_HUMAN	yes	no	0	0	0	0	0									1	42.438	42.438	3	0.015385	12319	20190902_JH_WT_Ubi_3	65.495	9.0816	1039800	0	0	0	0	0	0	0	0	1039800			4872	382	4293	13593	14260	14260				1
TDLKGDDLEEGVTSEEFDK	GlyGly (K)	2239.9968	0.99683128	1509	sp|Q6ZVM7-3|TM1L2_HUMAN;sp|Q6ZVM7-5|TM1L2_HUMAN;sp|Q6ZVM7|TM1L2_HUMAN;sp|Q6ZVM7-4|TM1L2_HUMAN;sp|Q6ZVM7-2|TM1L2_HUMAN	yes	no	0	0	1	0	1		1		1						34.974	34.974	3	0.00010654	8474	20190902_JH_EV_Ubi_2	98.169	55.356	1975000	0	1173800	0	801170	0	0	0	0	0			4873	1509	4294	13594;13595	14261;14262	14261		1510		2
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	Unmodified	2980.1953	0.19525838	559	sp|P14866|HNRPL_HUMAN	yes	yes	0	0	0	0	0	1		1	1		1	1	1	1	18.666	18.666	3;4	1.9898E-10	3918	20190902_JH_EV_Ubi_2	98.394	87.705	48671000	3740100	0	12358000	2564500	0	3123500	218920	16804000	9862100			4874	559	4295	13596;13597;13598;13599;13600;13601;13602	14263;14264;14265;14266;14267;14268;14269	14264				7
TDQAQKAEGAGDAK	GlyGly (K)	1502.6961	0.69611342	425	sp|P05204|HMGN2_HUMAN	yes	yes	0	0	1	0	1	1	1								12.776	12.776	3	1.4478E-05	2046	20190821_JH_MUT_Ubi	130.66	88.102	2885500	1506400	1379100	0	0	0	0	0	0	0			4875	425	4296	13603;13604	14270;14271	14271		403		2
TDQVIQSLIALVNDPQPEHPLR	Unmodified	2482.318	0.31798668	1095	sp|P68036-2|UB2L3_HUMAN;sp|P68036|UB2L3_HUMAN;sp|P68036-3|UB2L3_HUMAN;sp|A0A1B0GUS4|UB2L5_HUMAN	yes	no	0	0	0	0	0	1	1	1			1			1	52.064	52.064	3	3.825E-12	14091	20190821_JH_EV_Ubi	133.35	82.522	14471000	1869700	1916200	6345700	0	0	899920	0	0	3439600			4876	1095	4297	13605;13606;13607;13608;13609	14272;14273;14274;14275;14276	14272				5
TDSKYFTTNK	Acetyl (Protein N-term);GlyGly (K)	1359.6307	0.63065962	1076	sp|P63010-2|AP2B1_HUMAN;sp|P63010|AP2B1_HUMAN	yes	no	1	0	1	0	1								1		28.615	28.615	2	2.4966E-09	7845	20190902_JH_WT_Ubi_2	123.86	56.902	0	0	0	0	0	0	0	0	0	0			4877	1076	4298	13610	14277	14277		1064		1
TDSREDEISPPPPNPVVKGR	GlyGly (K)	2303.1506	0.150587	513	sp|P10644-2|KAP0_HUMAN;sp|P10644|KAP0_HUMAN	yes	no	0	0	1	0	2							1			27.206	27.206	4	0.029048	6103	20190902_JH_MUT_Ubi_3	42.58	16.993	1599600	0	0	0	0	0	0	1599600	0	0			4878	513	4299	13611	14278	14278		507		1
TDTLEDLFPTTKIPNPR	GlyGly (K)	2071.0586	0.058584096	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	1	0	1			1							43.277	43.277	3	0.022956	11304	20190821_JH_WT_Ubi	60.968	18.711	0	0	0	0	0	0	0	0	0	0			4879	542	4300	13612	14279	14279		535		1
TDYMVGSYGPR	Oxidation (M)	1260.5445	0.54448715	934	sp|P52565|GDIR1_HUMAN	yes	yes	0	0	0	1	0			1						1	29.089	29.089	2	3.8893E-11	6032	20190821_JH_WT_Ubi	183.67	126.5	39980000	0	0	21258000	0	0	0	0	0	18721000			4880	934	4301	13613;13614	14280;14281	14280			585	0
TEAAAAAPQR	Unmodified	984.49886	0.49885759	361	sp|O95817|BAG3_HUMAN	yes	yes	0	0	0	0	0		1								17.377	17.377	2	0.028773	2616	20190821_JH_MUT_Ubi	69.598	21.75	510260	0	510260	0	0	0	0	0	0	0			4881	361	4302	13615	14282	14282				0
TEAASDPQHPAASEGAAAAAASPPLLR	Unmodified	2556.2568	0.25684299	1836	sp|Q99536|VAT1_HUMAN;sp|Q99536-3|VAT1_HUMAN	yes	no	0	0	0	0	0			1					1	1	33.543	33.543	3	1.105E-12	9222	20190902_JH_WT_Ubi_3	112.88	79.532	35144000	0	0	9968900	0	0	0	0	11654000	13521000			4882	1836	4303	13616;13617;13618	14283;14284;14285	14285				3
TEAEQCKNLELK	GlyGly (K)	1575.7563	0.75627084	298	sp|O75643|U520_HUMAN	yes	yes	0	0	1	0	1		1								23.161	23.161	3	0.025283	3673	20190821_JH_MUT_Ubi	65.842	23.045	1315000	0	1315000	0	0	0	0	0	0	0			4883	298	4304	13619	14286	14286		283		1
TEAPESKPGSSSSLSLR	GlyGly (K)	1845.9068	0.90683448	1229	sp|Q13286-4|CLN3_HUMAN;sp|Q13286-6|CLN3_HUMAN;sp|Q13286-2|CLN3_HUMAN;sp|Q13286-7|CLN3_HUMAN;sp|Q13286-3|CLN3_HUMAN;sp|Q13286|CLN3_HUMAN	yes	no	0	0	1	0	1			1					1		25.577	25.577	3	0.0081583	4971	20190821_JH_WT_Ubi	66.568	28.231	28813000	0	0	24246000	0	0	0	0	4566700	0			4884	1229	4305	13620;13621	14287;14288	14287		1297		2
TEDHEEAGPLPTKVNLAHSEI	GlyGly (K)	2400.1557	0.15573196	1898	sp|Q9BXS4|TMM59_HUMAN	yes	yes	0	0	1	0	1	1	1	1	2	2	1	1	1	1	33.289	33.289	3;4	8.8202E-22	7447	20190821_JH_WT_Ubi	151.03	104.49	488170000	44719000	33181000	27453000	56718000	63497000	53242000	51040000	81741000	76581000			4885	1898	4306	13622;13623;13624;13625;13626;13627;13628;13629;13630;13631;13632	14289;14290;14291;14292;14293;14294;14295;14296;14297;14298;14299	14297		1839		11
TEDLEATSEHFK	Unmodified	1405.6361	0.63613893	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	0	0	0			1					1	1	26.144	26.144	3	0.0054953	5144	20190821_JH_WT_Ubi	87.001	24.178	15075000	0	0	2847800	0	0	0	0	7072200	5155100			4886	1882	4307	13633;13634;13635	14300;14301;14302	14300				3
TEEKDGGLGNEETLCDLQAQECPDQAGHR	GlyGly (K)	3370.4426	0.44262421	1524	sp|Q7RTX9-2|MOT14_HUMAN;sp|Q7RTX9|MOT14_HUMAN	yes	no	0	0	1	0	1	1		1	1	1	1			1	31.848	31.848	4	2.7647E-16	7232	20190821_JH_EV_Ubi	118.08	90.959	28886000	7869000	0	2232500	8296500	5072400	2101600	0	0	3314100			4887	1524	4308	13636;13637;13638;13639;13640;13641	14303;14304;14305;14306;14307;14308;14309;14310	14303		1519		8
TEFLSFMNTELAAFTK	Oxidation (M)	1864.8917	0.89170169	751	sp|P31949|S10AB_HUMAN	yes	yes	0	0	0	1	0									1	49.413	49.413	3	0.034185	14496	20190902_JH_WT_Ubi_3	46.701	16.642	2979400	0	0	0	0	0	0	0	0	2979400			4888	751	4309	13642	14311	14311			472	1
TEFLSFMNTELAAFTK	Oxidation (M);Deamidation (NQ)	1865.8757	0.87571727	751	sp|P31949|S10AB_HUMAN	yes	yes	0	1	0	1	0									1	50.698	50.698	2	1.2959E-07	14824	20190902_JH_WT_Ubi_3	124.12	77.275	1421300	0	0	0	0	0	0	0	0	1421300			4889	751	4309	13643	14312	14312	265		472	1
TELAEPIAIRPTSETVMYPAYAK	Oxidation (M)	2566.2989	0.29889072	453	sp|P07814|SYEP_HUMAN	yes	yes	0	0	0	1	1									1	38.669	38.669	3	0.00060792	11044	20190902_JH_WT_Ubi_3	80.541	50.114	4927900	0	0	0	0	0	0	0	0	4927900			4890	453	4310	13644	14313	14313			254	1
TELEDTLDSTAAQQELR	Unmodified	1918.912	0.91197944	776	sp|P35579|MYH9_HUMAN	yes	yes	0	0	0	0	0			1					1		38.613	38.613	3	7.4648E-14	11418	20190902_JH_WT_Ubi_2	149	64.27	7269800	0	0	3457300	0	0	0	0	3812500	0			4891	776	4311	13645;13646	14314;14315	14315				2
TELFIAAEGIHTGQFVYCGK	Unmodified	2240.0936	0.093589394	1071	sp|P62917|RL8_HUMAN	yes	yes	0	0	0	0	0								1		42.888	42.888	3	0.012253	12842	20190902_JH_WT_Ubi_2	51.495	20.176	2680500	0	0	0	0	0	0	0	2680500	0			4892	1071	4312	13647	14316	14316				1
TELVEPTEYLVVHLK	Unmodified	1768.9611	0.96110188	564	sp|P15144|AMPN_HUMAN	yes	yes	0	0	0	0	0			1							43.457	43.457	3	0.00095068	11393	20190821_JH_WT_Ubi	95.264	58.252	26446000	0	0	26446000	0	0	0	0	0	0			4893	564	4313	13648	14317;14318	14318				2
TEMENEFVLIKK	Oxidation (M);GlyGly (K)	1609.8022	0.8021584	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000016045	yes	no	0	0	1	1	1	1			1	1	1	1	1	1	30.953	30.953	3	3.6353E-17	7215	20190902_JH_MUT_Ubi_3	172.61	120.54	30564000	3743800	0	0	4833100	5054700	4343700	2456400	5260200	4871700		+	4894	6	4314	13649;13650;13651;13652;13653;13654;13655	14319;14320;14321;14322;14323;14324;14325	14323		12;13	9	7
TEMENEFVLIKK	GlyGly (K)	1593.8072	0.80724378	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__H-INV:HIT000016045	yes	no	0	0	1	0	1	1	1	1			1	1			34.455	34.455	3	0.00021809	8289	20190821_JH_EV_Ubi	128.88	79.249	6632500	1551900	890060	1654700	0	0	1372700	1163200	0	0		+	4895	6	4314	13656;13657;13658;13659;13660	14326;14327;14328;14329;14330	14326		12;13		5
TENLVDSSVTFKTTSR	GlyGly (K)	1897.9381	0.93813461	925	sp|P51809-3|VAMP7_HUMAN;sp|P51809|VAMP7_HUMAN	yes	no	0	0	1	0	1		1	1				1			31.572	31.572	3	5.7029E-06	6521	20190821_JH_MUT_Ubi	121.82	86.738	9814600	0	1559000	6210400	0	0	0	2045200	0	0			4896	925	4315	13661;13662;13663	14331;14332;14333	14331		889		3
TENPGDASDLQGR	Unmodified	1358.6062	0.60623578	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	0	0	0			1							23.739	23.739	2	0.0063652	4491	20190821_JH_WT_Ubi	86.114	27.518	2534300	0	0	2534300	0	0	0	0	0	0			4897	245	4316	13664	14334	14334				1
TENPLILIDEVDK	Unmodified	1497.7926	0.79263957	787	sp|P36776-3|LONM_HUMAN;sp|P36776-2|LONM_HUMAN;sp|P36776|LONM_HUMAN	yes	no	0	0	0	0	0			1							47.962	47.962	2	0.019886	13202	20190821_JH_WT_Ubi	69.815	40.282	1534500	0	0	1534500	0	0	0	0	0	0			4898	787	4317	13665	14335	14335				1
TEQDLALGTDAEGQKVK	GlyGly (K)	1915.9487	0.9486993	112	sp|O00186|STXB3_HUMAN	yes	yes	0	0	1	0	1		1		1						27.358	27.358	3	1.8082E-05	6022	20190902_JH_EV_Ubi_2	115.56	63.966	1658800	0	892840	0	765960	0	0	0	0	0			4899	112	4318	13666;13667	14336;14337	14336		98;99		2
TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR	Unmodified	3120.4748	0.47483427	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1		1	1	42.573	42.573	3	1.7065E-07	12302	20190902_JH_WT_Ubi_3	87.772	61.113	35414000	5923100	2963900	16059000	961920	0	1842400	0	3941500	3722600			4900	542	4319	13668;13669;13670;13671;13672;13673;13674	14338;14339;14340;14341;14342;14343;14344;14345	14344				8
TEQGPQIDQKQFDK	GlyGly (K)	1774.8486	0.84859132	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	25.244	25.244	3	1.8606E-07	6793	20190902_JH_WT_Ubi_2	142.39	100.99	787870000	72388000	51105000	134340000	38599000	71841000	68209000	80770000	170640000	99974000			4901	865	4320	13675;13676;13677;13678;13679;13680;13681;13682;13683	14346;14347;14348;14349;14350;14351;14352;14353;14354	14353		845;846		9
TEQGPQIDQKQFDK	GlyGly (K);Deamidation (NQ)	1775.8326	0.83260691	865	sp|P47895|AL1A3_HUMAN	yes	yes	0	1	1	0	1					1	1				26.161	26.161	2;3	0.010495	6043	20190902_JH_MUT_Ubi_2	80.469	46.09	5132900	0	0	0	0	4590200	542700	0	0	0			4902	865	4320	13684;13685	14355;14356	14356	931;932	845;846		1
TESEMHTLSSSAKADTSK	Oxidation (M);GlyGly (K)	2038.9113	0.91132751	2137	sp|Q9UHX3-5|AGRE2_HUMAN;sp|Q9UHX3-4|AGRE2_HUMAN;sp|Q9UHX3-6|AGRE2_HUMAN;sp|Q9UHX3-3|AGRE2_HUMAN;sp|Q9UHX3-2|AGRE2_HUMAN;sp|Q9UHX3|AGRE2_HUMAN	yes	no	0	0	1	1	1								1		17.783	17.783	3	0.014519	4328	20190902_JH_WT_Ubi_2	68.261	46.42	0	0	0	0	0	0	0	0	0	0			4903	2137	4321	13686	14357	14357		2007	1126	1
TESTPITAVKQPEKVAATR	2 GlyGly (K)	2254.1917	0.19172353	2254	sp|Q9Y678|COPG1_HUMAN	yes	yes	0	0	2	0	2				1					1	26.333	26.333	4	0.0021761	6870	20190902_JH_WT_Ubi_3	83.418	58.524	7051000	0	0	0	992270	0	0	0	0	6058700			4904	2254	4322	13687;13688	14358;14359	14359		2089;2090		2
TETPIVSKSLSSSLDDTEVK	GlyGly (K)	2249.1275	0.12745152	334	sp|O95292|VAPB_HUMAN	yes	yes	0	0	1	0	1						1				34.943	34.943	3	0.005659	9254	20190902_JH_MUT_Ubi_2	62.589	35.558	1208900	0	0	0	0	0	1208900	0	0	0			4905	334	4323	13689	14360	14360		310		1
TETQEKNPLPSK	GlyGly (K)	1484.7471	0.74708636	1050	sp|P62328|TYB4_HUMAN	yes	yes	0	0	1	0	1		1	1				1			20.056	20.056	3	0.00077436	4220	20190902_JH_MUT_Ubi_3	116.24	40.418	4131000	0	839430	1862800	0	0	0	1428800	0	0			4906	1050	4324	13690;13691;13692	14361;14362;14363	14362		1022;1023		3
TETQEKNTLPTK	GlyGly (K)	1502.7577	0.75765105	12	CON__P21752;sp|P63313|TYB10_HUMAN	yes	no	0	0	1	0	1									1	18.775	18.775	2	0.0077826	4616	20190902_JH_WT_Ubi_3	92.611	33.458	833190	0	0	0	0	0	0	0	0	833190		+	4907	12	4325	13693	14364	14364		36;37		0
TETVEEPMEEEEAAK	Unmodified	1720.7349	0.73492628	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0			1				1			28.703	28.703	2	5.1378E-05	6517	20190902_JH_MUT_Ubi_3	120.06	63.657	5898400	0	0	5663400	0	0	0	234990	0	0			4908	557	4326	13694;13695	14365;14366	14365				2
TEVNSGFFYKSAEER	GlyGly (K)	1876.8592	0.85915601	809	sp|P40227-2|TCPZ_HUMAN;sp|P40227|TCPZ_HUMAN	yes	no	0	0	1	0	1		1								31.356	31.356	3	0.027957	6369	20190821_JH_MUT_Ubi	55.176	24.214	367740	0	367740	0	0	0	0	0	0	0			4909	809	4327	13696	14367	14367		787		1
TEVNYTQLVDLHAR	Unmodified	1657.8424	0.84238373	792	sp|P36969-2|GPX4_HUMAN;sp|P36969|GPX4_HUMAN	yes	no	0	0	0	0	0	1		1					1	1	36.611	36.611	3	4.6478E-05	10734	20190902_JH_WT_Ubi_2	121.42	85.681	25131000	1147200	0	10930000	0	0	0	0	6217200	6835900			4910	792	4328	13697;13698;13699;13700	14368;14369;14370;14371	14370				4
TEVTGDHIPTPQDLPQR	Unmodified	1902.9436	0.94355434	987	sp|P56211-2|ARP19_HUMAN;sp|P56211|ARP19_HUMAN	yes	no	0	0	0	0	0			1		1	1		1		32.554	32.554	3	0.01302	7183	20190821_JH_WT_Ubi	56.872	28.291	10270000	0	0	4276300	0	749520	789540	0	4454200	0			4911	987	4329	13701;13702;13703;13704	14372;14373;14374;14375	14374				4
TEWLDGK	Unmodified	847.40758	0.40758296	1072	sp|P62937|PPIA_HUMAN;sp|P62937-2|PPIA_HUMAN;sp|Q9Y536|PAL4A_HUMAN;sp|P0DN37|PAL4G_HUMAN;sp|P0DN26|PAL4F_HUMAN;sp|F5H284|PAL4D_HUMAN;sp|A0A0B4J2A2|PAL4C_HUMAN;sp|A0A075B759|PAL4E_HUMAN	yes	no	0	0	0	0	0									1	28.695	28.695	1	0.029592	7612	20190902_JH_WT_Ubi_3	138.85	94.156	10764000	0	0	0	0	0	0	0	0	10764000			4912	1072	4330	13705	14376	14376				0
TEYMAFPKPFESSSSIGAEK	Oxidation (M);GlyGly (K)	2335.0678	0.067828154	1333	sp|Q15154-4|PCM1_HUMAN;sp|Q15154-2|PCM1_HUMAN;sp|Q15154-5|PCM1_HUMAN;sp|Q15154|PCM1_HUMAN	yes	no	0	0	1	1	1						1			1	35.484	35.484	3	0.0043267	9995	20190902_JH_WT_Ubi_3	67.579	32.651	4098500	0	0	0	0	0	1374800	0	0	2723600			4913	1333	4331	13706;13707	14377;14378	14378		1390;1391	833	2
TFAGNTPLHLAAGLGYPTLTR	Unmodified	2170.1535	0.15348753	1124	sp|Q00653-4|NFKB2_HUMAN;sp|Q00653|NFKB2_HUMAN	yes	no	0	0	0	0	0			1							43.73	43.73	3	0.0022485	11496	20190821_JH_WT_Ubi	65.149	34.061	3406300	0	0	3406300	0	0	0	0	0	0			4914	1124	4332	13708	14379	14379				1
TFAYTNHTVLPEALER	Unmodified	1860.937	0.9370124	436	sp|P06737-2|PYGL_HUMAN;sp|P06737|PYGL_HUMAN	yes	no	0	0	0	0	0			1							36.79	36.79	3	0.018111	8658	20190821_JH_WT_Ubi	53.981	16.968	11932000	0	0	11932000	0	0	0	0	0	0			4915	436	4333	13709	14380	14380				1
TFCGTPDYIAPEIIAYQPYGK	Unmodified	2403.1457	0.14568454	422	sp|P05129-2|KPCG_HUMAN;sp|P05771|KPCB_HUMAN;sp|P17252|KPCA_HUMAN;sp|P05771-2|KPCB_HUMAN;sp|P05129|KPCG_HUMAN	yes	no	0	0	0	0	0								1	1	48.711	48.711	3	0.0063115	14308	20190902_JH_WT_Ubi_3	57.989	19.572	1191700	0	0	0	0	0	0	0	0	1191700			4916	422	4334	13710;13711	14381;14382	14382				2
TFDAQIVIIEHK	Unmodified	1412.7664	0.76636524	566	sp|P15170-2|ERF3A_HUMAN;sp|P15170-3|ERF3A_HUMAN;sp|P15170|ERF3A_HUMAN	yes	no	0	0	0	0	0	1	1	1							36.803	36.803	3	0.010609	8644	20190821_JH_WT_Ubi	74.78	36.841	9403400	1263200	2703600	5436600	0	0	0	0	0	0			4917	566	4335	13712;13713;13714	14383;14384;14385	14385				3
TFDQLTPDESK	Unmodified	1279.5932	0.59321148	1339	sp|Q15293|RCN1_HUMAN	yes	yes	0	0	0	0	0		1	1							30.962	30.962	2	0.0070464	6551	20190821_JH_WT_Ubi	93.058	41.865	12661000	0	1312500	11349000	0	0	0	0	0	0			4918	1339	4336	13715;13716	14386;14387	14387				0
TFDQLTPEESKER	GlyGly (K)	1692.7955	0.79549312	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-5|CALU_HUMAN;sp|O43852-9|CALU_HUMAN;sp|O43852-10|CALU_HUMAN;sp|O43852-6|CALU_HUMAN;sp|O43852-13|CALU_HUMAN;sp|O43852-14|CALU_HUMAN;sp|O43852-11|CALU_HUMAN;sp|O43852-12|CALU_HUMAN;sp|O43852-7|CALU_HUMAN;sp|O43852-8|CALU_HUMAN	yes	no	0	0	1	0	1						1	1			26.578	26.578	3	0.0030506	6188	20190902_JH_MUT_Ubi_2	95.981	57.953	4478400	0	0	0	0	0	2685100	1793300	0	0			4919	225	4337	13717;13718	14388;14389;14390	14389		203		3
TFFSFPAVVAPFK	Unmodified	1456.7755	0.77547336	821	sp|P41250|GARS_HUMAN	yes	yes	0	0	0	0	0			1							53.374	53.374	2	0.016671	15161	20190821_JH_WT_Ubi	72.321	47.445	5246700	0	0	5246700	0	0	0	0	0	0			4920	821	4338	13719	14391	14391				1
TFHETLDCCGSSTLTALTTSVLK	Unmodified	2541.2091	0.20908944	996	sp|P60033|CD81_HUMAN	yes	yes	0	0	0	0	0	1		1			1		1		44.494	44.494	3	0.0010829	11919	20190821_JH_EV_Ubi	68.676	38.538	11441000	1721700	0	6461100	0	0	994690	0	2263600	0			4921	996	4339	13720;13721;13722;13723	14392;14393;14394;14395;14396	14392				5
TFHIFYYLLSGAGEHLK	Unmodified	1995.0254	0.025433475	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0			1					1		46.521	46.521	3;4	7.1064E-26	12681	20190821_JH_WT_Ubi	177.39	140.21	15108000	0	0	6749100	0	0	0	0	8358900	0			4922	776	4340	13724;13725	14397;14398	14397				2
TFIGPGGNMPGYLRPETAQGIFLNFK	Oxidation (M)	2840.432	0.43197058	821	sp|P41250|GARS_HUMAN	yes	yes	0	0	0	1	1			1			1		1	1	46.833	46.833	3	6.9216E-07	12834	20190821_JH_WT_Ubi	97.589	73.27	24960000	0	0	9993200	0	0	2863100	0	4284800	7819300			4923	821	4341	13726;13727;13728;13729	14399;14400;14401;14402	14400			523	4
TFIGPGGNMPGYLRPETAQGIFLNFK	Unmodified	2824.4371	0.43705596	821	sp|P41250|GARS_HUMAN	yes	yes	0	0	0	0	1			1							49.539	49.539	3	0.02042	13802	20190821_JH_WT_Ubi	53.381	30.355	4193800	0	0	4193800	0	0	0	0	0	0			4924	821	4341	13730	14403	14403				1
TFIPGQGNNAYVFPGVALGVIAGGIR	Unmodified	2587.3911	0.39109204	1389	sp|Q16798|MAON_HUMAN	yes	yes	0	0	0	0	0			1							54.975	54.975	3	7.672E-05	15780	20190821_JH_WT_Ubi	79.455	53.437	813850	0	0	813850	0	0	0	0	0	0			4925	1389	4342	13731	14404	14404				1
TFNIKNDFTEEEEAQVR	GlyGly (K)	2183.0131	0.013090467	1082	sp|P63208|SKP1_HUMAN	yes	yes	0	0	1	0	1	1	1	1		1	1	1	1	1	35.596	35.596	3	2.4309E-33	8086	20190821_JH_MUT_Ubi	191.96	146.52	33054000	2644600	4578200	5977600	0	2646000	4083200	2888000	3811200	6425000			4926	1082	4343	13732;13733;13734;13735;13736;13737;13738;13739	14405;14406;14407;14408;14409;14410;14411;14412	14407		1075		8
TFNLIPAVGLNVHSMLK	Oxidation (M)	1869.0182	0.018239607	1908	sp|Q9BYD3|RM04_HUMAN	yes	yes	0	0	0	1	0						1				42.567	42.567	3	0.024075	12308	20190902_JH_MUT_Ubi_2	50.305	19.4	1198500	0	0	0	0	0	1198500	0	0	0			4927	1908	4344	13740	14413	14413			1046	1
TFNQVEIKPEMIGHYLGEFSITYK	Oxidation (M)	2859.4153	0.41531746	1062	sp|P62841|RS15_HUMAN	yes	yes	0	0	0	1	1			1					1		45.368	45.368	4	0.0058818	12156	20190821_JH_WT_Ubi	51.044	26.366	8586300	0	0	6333000	0	0	0	0	2253300	0			4928	1062	4345	13741;13742	14414;14415	14414			653	2
TFNTSTGGLLLPSDTK	Unmodified	1650.8465	0.84646606	541	sp|P12956-2|XRCC6_HUMAN;sp|P12956|XRCC6_HUMAN	yes	no	0	0	0	0	0									1	39.568	39.568	2	0.0063785	11455	20190902_JH_WT_Ubi_3	76.01	28.166	16863000	0	0	0	0	0	0	0	0	16863000			4929	541	4346	13743	14416	14416				0
TFPTVNPSTGEVICQVAEGDK	Unmodified	2248.0682	0.068162505	421	sp|P05091-2|ALDH2_HUMAN;sp|P05091|ALDH2_HUMAN	yes	no	0	0	0	0	0				1				1		42.914	42.914	2;3	0.0013607	10822	20190902_JH_EV_Ubi_2	69.986	33.463	1787100	0	0	0	881680	0	0	0	905400	0			4930	421	4347	13744;13745	14417;14418	14417				1
TFQLQLLSPSSSIVPAFNTGTITQVIK	Unmodified	2889.5852	0.58515998	217	sp|O43747|AP1G1_HUMAN;sp|O43747-2|AP1G1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			54.96	54.96	3	3.1238E-64	14713	20190821_JH_MUT_Ubi	198.73	171.53	37824000	0	21376000	12329000	0	0	1902200	2216600	0	0			4931	217	4348	13746;13747;13748;13749	14419;14420;14421;14422;14423	14419				5
TFQTKANLSQHQRIHSGEK	3 Deamidation (NQ)	2212.0873	0.087258463	1673	sp|Q8TBZ5|ZN502_HUMAN	yes	yes	0	3	0	0	2									1	39.146	39.146	3	0.031773	11217	20190902_JH_WT_Ubi_3	48.907	7.705	7869700	0	0	0	0	0	0	0	0	7869700			4932	1673	4349	13750	14424	14424	1156;1157;1158			0
TFSHELSDFGLESTAGEIPVVAIR	Unmodified	2574.2966	0.29658254	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	48.345	48.345	3	1.108E-38	14112	20190902_JH_WT_Ubi_3	182.22	142.08	130950000	9902100	16386000	41419000	1730200	3692300	8181800	8553600	21670000	19413000			4933	730	4350	13751;13752;13753;13754;13755;13756;13757;13758;13759	14425;14426;14427;14428;14429;14430;14431;14432;14433;14434	14434				10
TFSVWYVPEVTGTHK	Unmodified	1749.8726	0.87262123	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	41.575	41.575	3	1.4321E-05	12482	20190902_JH_WT_Ubi_2	122.66	101.82	51613000	2681100	4416100	16391000	1442000	1532500	5593400	3244000	8117100	8195400			4934	637	4351	13760;13761;13762;13763;13764;13765;13766;13767;13768	14435;14436;14437;14438;14439;14440;14441;14442;14443	14442				9
TFVNITPAEVGVLVGK	Unmodified	1642.9294	0.92940782	451	sp|P07737|PROF1_HUMAN	yes	yes	0	0	0	0	0	1	1				1				48.756	48.756	2;3	1.0936E-13	12855	20190821_JH_MUT_Ubi	151.38	87.435	26641000	647170	1120100	0	0	0	24873000	0	0	0			4935	451	4352	13769;13770;13771	14444;14445;14446	14445				2
TFVNITPAEVGVLVGKDR	GlyGly (K)	2028.1004	0.10038933	451	sp|P07737|PROF1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1	1	1	44.075	44.075	3	1.9831E-11	11237	20190821_JH_MUT_Ubi	144.4	114.77	46596000	4377300	6709400	9939000	1243800	0	6913200	11510000	0	5903900			4936	451	4353	13772;13773;13774;13775;13776;13777;13778;13779	14447;14448;14449;14450;14451;14452;14453;14454;14455	14449		454		9
TFVSGACDASIK	Unmodified	1254.5914	0.59143734	1067	sp|P62879|GBB2_HUMAN;sp|P62879-2|GBB2_HUMAN	yes	no	0	0	0	0	0			1							29.084	29.084	2	0.014653	6018	20190821_JH_WT_Ubi	73.067	16.635	1426300	0	0	1426300	0	0	0	0	0	0			4937	1067	4354	13780	14456	14456				0
TFYGLHQDFPSVVLVGLGK	Unmodified	2076.1044	0.10441208	711	sp|P28838-2|AMPL_HUMAN;sp|P28838|AMPL_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1	1	1	1	48.148	48.148	3	4.9224E-09	14526	20190902_JH_WT_Ubi_2	126.42	96.35	81938000	2427900	8543600	36201000	0	962480	4635500	4962800	10083000	14121000			4938	711	4355	13781;13782;13783;13784;13785;13786;13787;13788	14457;14458;14459;14460;14461;14462;14463;14464;14465;14466	14465				10
TGAGSKGLQSSYSEEYLR	GlyGly (K)	2045.9654	0.96541199	1894	sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN	yes	no	0	0	1	0	1	1		1			1		1	1	28.949	28.949	3	8.0865E-34	8051	20190902_JH_WT_Ubi_2	187.56	156.24	47629000	1076400	0	13919000	0	0	1137900	0	16266000	15230000			4939	1894	4356	13789;13790;13791;13792;13793	14467;14468;14469;14470;14471	14470		1832		5
TGAHLELSLAK	Unmodified	1138.6346	0.63462279	1121	sp|Q00341-2|VIGLN_HUMAN;sp|Q00341|VIGLN_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			28.941	28.941	3	0.0002805	6893	20190902_JH_MUT_Ubi_2	132.25	95.579	6018400	0	1037700	2144300	0	0	1819800	1016600	0	0			4940	1121	4357	13794;13795;13796;13797	14472;14473;14474;14475	14473				4
TGAIVDVPVGEELLGR	Unmodified	1623.8832	0.88318591	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN	yes	no	0	0	0	0	0	1	1								46.855	46.855	2	3.1481E-26	12688	20190821_JH_EV_Ubi	182.25	142.82	9888100	9888100	0	0	0	0	0	0	0	0			4941	680	4358	13798;13799	14476;14477	14476				2
TGALLLQGFIQDR	Unmodified	1430.7882	0.78816332	1176	sp|Q07812-5|BAX_HUMAN;sp|Q07812-8|BAX_HUMAN;sp|Q07812|BAX_HUMAN;sp|Q07812-2|BAX_HUMAN;sp|Q07812-7|BAX_HUMAN	yes	no	0	0	0	0	0		1								47.09	47.09	2	0.025756	12211	20190821_JH_MUT_Ubi	65.241	12.452	691280	0	691280	0	0	0	0	0	0	0			4942	1176	4359	13800	14478	14478				1
TGASFQKAQQEFAAGVFSNPAVR	GlyGly (K)	2524.2459	0.24588437	157	sp|O14828-2|SCAM3_HUMAN;sp|O14828|SCAM3_HUMAN	yes	no	0	0	1	0	1		1	1		1	1		1	1	40.446	40.446	3	1.1021E-22	10108	20190821_JH_WT_Ubi	156.32	102.99	32111000	0	2717100	8238000	0	1972500	2393400	0	7506500	9283900			4943	157	4360	13801;13802;13803;13804;13805;13806	14479;14480;14481;14482;14483;14484;14485;14486	14484		131		8
TGDFQLHTNVNDGTEFGGSIYQK	Unmodified	2527.1615	0.16154562	847	sp|P45880-2|VDAC2_HUMAN;sp|P45880|VDAC2_HUMAN;sp|P45880-1|VDAC2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1		1	1	1	1	37.351	37.351	3	4.5325E-68	10536	20190902_JH_WT_Ubi_3	207.54	163.71	65808000	4303800	4459000	36356000	1181000	0	2556800	2468700	10446000	4036900			4944	847	4361	13807;13808;13809;13810;13811;13812;13813;13814	14487;14488;14489;14490;14491;14492;14493;14494;14495;14496	14496				10
TGDVEDSTVLKSLHLPK	GlyGly (K)	1952.0215	0.021470309	2178	sp|Q9UNN5-2|FAF1_HUMAN;sp|Q9UNN5|FAF1_HUMAN	yes	no	0	0	1	0	1						1				35.741	35.741	4	0.0065976	9580	20190902_JH_MUT_Ubi_2	65.956	23.531	2890700	0	0	0	0	0	2890700	0	0	0			4945	2178	4362	13815	14497	14497		2034;2035		1
TGEEAQSFQLQPVDPWPEGQSQKK	GlyGly (K);Deamidation (NQ)	2828.3253	0.32531648	594	sp|P17040-4|ZSC20_HUMAN;sp|P17040-2|ZSC20_HUMAN;sp|P17040-3|ZSC20_HUMAN;sp|P17040|ZSC20_HUMAN	yes	no	0	1	1	0	1				1						31.553	31.553	3	0.011263	7409	20190902_JH_EV_Ubi_2	59.574	12.872	6499000	0	0	0	6499000	0	0	0	0	0			4946	594	4363	13816	14498	14498	866;867	583;584		1
TGEENISKVIAQAGYAKYQEFETK	GlyGly (K);3 Deamidation (NQ)	2820.3341	0.33414983	253	sp|O60522-2|TDRD6_HUMAN;sp|O60522|TDRD6_HUMAN	yes	no	0	3	1	0	2			1							59.243	59.243	3	0.031289	16548	20190821_JH_WT_Ubi	46.154	19.315	0	0	0	0	0	0	0	0	0	0			4947	253	4364	13817	14499	14499	81;788;789			1
TGEEVGFVVDAK	Unmodified	1249.619	0.6190323	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0							1			34.345	34.345	2	5.2694E-05	8456	20190902_JH_MUT_Ubi_3	115	69.868	2405600	0	0	0	0	0	0	2405600	0	0			4948	282	4365	13818	14500	14500				0
TGEEVGFVVDAKTAGK	GlyGly (K)	1720.8632	0.86317875	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	0	1		1				1				31.214	31.214	3	0.0030515	7707	20190902_JH_MUT_Ubi_2	79.652	38.56	2152800	0	939680	0	0	0	1213200	0	0	0			4949	282	4366	13819;13820	14501;14502	14502		274		2
TGEMSGPVFTDSGIHIILR	Oxidation (M)	2045.0252	0.025175478	1249	sp|Q13526|PIN1_HUMAN	yes	yes	0	0	0	1	0	1	1	1		1					42.185	42.185	3	3.2533E-13	11088	20190821_JH_EV_Ubi	137.17	99.138	10979000	4781000	1561200	3478300	0	1158300	0	0	0	0			4950	1249	4367	13821;13822;13823;13824	14503;14504;14505;14506;14507	14504			779	5
TGEMSGPVFTDSGIHIILR	Unmodified	2029.0303	0.030260856	1249	sp|Q13526|PIN1_HUMAN	yes	yes	0	0	0	0	0			1							44.373	44.373	3	0.01823	11779	20190821_JH_WT_Ubi	48.623	18.899	2259400	0	0	2259400	0	0	0	0	0	0			4951	1249	4367	13825	14508	14508				1
TGEPHCPGDEDETFK	Unmodified	1717.689	0.68897914	308	sp|O75976|CBPD_HUMAN;sp|O75976-2|CBPD_HUMAN	yes	no	0	0	0	0	0								1		23.759	23.759	3	0.0014687	6202	20190902_JH_WT_Ubi_2	88.282	69.224	4961500	0	0	0	0	0	0	0	4961500	0			4952	308	4368	13826	14509	14509				1
TGESSSEGKAPLIGGR	GlyGly (K)	1658.8224	0.82237657	1824	sp|Q96T49-2|PP16B_HUMAN;sp|Q96T49|PP16B_HUMAN	yes	no	0	0	1	0	1	1			1	1					23.87	23.87	3	0.00014565	5081	20190902_JH_EV_Ubi_3	108.66	83.808	4482400	1029300	0	0	1222000	2231100	0	0	0	0			4953	1824	4369	13827;13828;13829	14510;14511;14512	14512		1787		3
TGFQAVTGK	Unmodified	907.47633	0.47633123	625	sp|P20042|IF2B_HUMAN	yes	yes	0	0	0	0	0					1					24.423	24.423	2	0.020835	5224	20190902_JH_EV_Ubi_3	81.95	38.827	1329900	0	0	0	0	1329900	0	0	0	0			4954	625	4370	13830	14513	14513				0
TGFSTSPESPYTHWK	Unmodified	1723.7842	0.78420015	1852	sp|Q99873-2|ANM1_HUMAN;sp|Q99873-3|ANM1_HUMAN;sp|Q99873|ANM1_HUMAN;sp|Q99873-5|ANM1_HUMAN	yes	no	0	0	0	0	0		1	1	1				1	1	31.797	31.797	3	0.0014775	8607	20190902_JH_WT_Ubi_3	88.163	44.558	42766000	0	1975100	10781000	3617500	0	0	0	13700000	12692000			4955	1852	4371	13831;13832;13833;13834;13835	14514;14515;14516;14517;14518	14518				5
TGFTPLHIAAHYENLNVAQLLLNR	Unmodified	2704.4449	0.44491853	584	sp|P16157-2|ANK1_HUMAN;sp|P16157-8|ANK1_HUMAN;sp|P16157-12|ANK1_HUMAN;sp|P16157-21|ANK1_HUMAN;sp|P16157|ANK1_HUMAN;sp|P16157-3|ANK1_HUMAN;sp|P16157-16|ANK1_HUMAN;sp|P16157-5|ANK1_HUMAN;sp|P16157-15|ANK1_HUMAN;sp|P16157-11|ANK1_HUMAN;sp|P16157-10|ANK1_HUMAN;sp|P16157-13|ANK1_HUMAN;sp|P16157-4|ANK1_HUMAN;sp|P16157-7|ANK1_HUMAN;sp|P16157-6|ANK1_HUMAN;sp|P16157-9|ANK1_HUMAN;sp|P16157-14|ANK1_HUMAN	yes	no	0	0	0	0	0		1								48.315	48.315	4	0.029802	12613	20190821_JH_MUT_Ubi	33.127	17.02	2148400	0	2148400	0	0	0	0	0	0	0			4956	584	4372	13836	14519	14519				1
TGGMAFHSYFMEAIAPPLLQELK	2 Oxidation (M)	2582.2549	0.25491742	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	2	0		1								48.509	48.509	3	0.018491	12715	20190821_JH_MUT_Ubi	45.696	9.4496	922370	0	922370	0	0	0	0	0	0	0			4957	881	4373	13837	14520	14520			555;556	1
TGIEQGSDAGYLCESQK	Unmodified	1841.8102	0.8101569	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0			1							30.582	30.582	3	0.0020741	6472	20190821_JH_WT_Ubi	75.143	53.61	1763200	0	0	1763200	0	0	0	0	0	0			4958	818	4374	13838	14521	14521				1
TGISDVFAK	Unmodified	936.49165	0.49164694	618	sp|P19338|NUCL_HUMAN	yes	yes	0	0	0	0	0	1								1	35.041	35.041	1;2	0.019887	8418	20190821_JH_EV_Ubi	82.75	21.779	8352500	7187900	0	0	0	0	0	0	0	1164600			4959	618	4375	13839;13840	14522;14523	14522				0
TGISHGHTVYVVHDGFEGLAK	Unmodified	2223.1073	0.10726562	604	sp|P17858|PFKAL_HUMAN;sp|P17858-2|PFKAL_HUMAN	yes	no	0	0	0	0	0	1	1	1					1	1	29.289	29.289	4	5.379E-07	8031	20190902_JH_WT_Ubi_2	105.2	70.274	50801000	1622100	1126000	18594000	0	0	0	0	19720000	9739300			4960	604	4376	13841;13842;13843;13844;13845	14524;14525;14526;14527;14528	14527				5
TGIYSSTSCHK	Unmodified	1239.5554	0.55538619	493	sp|P09668|CATH_HUMAN	yes	yes	0	0	0	0	0			1							16.81	16.81	3	0.013599	3049	20190821_JH_WT_Ubi	73.499	39.739	6384900	0	0	6384900	0	0	0	0	0	0			4961	493	4377	13846	14529	14529				1
TGKTEDDSSPK	GlyGly (K)	1277.5735	0.57353867	255	sp|O60669|MOT2_HUMAN	yes	yes	0	0	1	0	1	1	1			1				1	7.3878	7.3878	3	0.00050287	760	20190821_JH_MUT_Ubi	129.74	58.926	122380000	1248800	2155200	0	0	12419000	0	0	0	106550000			4962	255	4378	13847;13848;13849;13850	14530;14531;14532;14533	14532		233		4
TGKTVSYLGLE	GlyGly (K)	1280.6612	0.66123147	119	sp|O00244|ATOX1_HUMAN	yes	yes	0	0	1	0	1								1		34.851	34.851	2	0.013104	10144	20190902_JH_WT_Ubi_2	94.363	35.687	28176000	0	0	0	0	0	0	0	28176000	0			4963	119	4379	13851	14534	14534		106		1
TGLWVGDCFIYTSSVNR	Unmodified	1973.9305	0.93054681	777	sp|P35606-2|COPB2_HUMAN;sp|P35606|COPB2_HUMAN	yes	no	0	0	0	0	0			1							47.535	47.535	2	0.025866	13000	20190821_JH_WT_Ubi	53.967	24.668	1706400	0	0	1706400	0	0	0	0	0	0			4964	777	4380	13852	14535	14535				1
TGNLAQTRAR	2 Deamidation (NQ)	1088.5574	0.5574351	1704	sp|Q8WXR4-6|MYO3B_HUMAN;sp|Q8WXR4-3|MYO3B_HUMAN;sp|Q8WXR4-5|MYO3B_HUMAN;sp|Q8WXR4-2|MYO3B_HUMAN;sp|Q8WXR4-4|MYO3B_HUMAN;sp|Q8WXR4|MYO3B_HUMAN;sp|Q8WXR4-7|MYO3B_HUMAN	yes	no	0	2	0	0	1			1							32.794	32.794	2	0.026079	7202	20190821_JH_WT_Ubi	68.626	9.2761	4446100	0	0	4446100	0	0	0	0	0	0			4965	1704	4381	13853	14536	14536	553;1169			0
TGPAATTLPDGAAAESLVESSEVAVIGFFK	Unmodified	2934.4862	0.4862338	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	56.855	56.855	3	1.2311E-32	15405	20190902_JH_MUT_Ubi_2	156.79	120.87	23539000	0	3460500	11029000	0	0	1227200	0	5420500	2401500			4966	444	4382	13854;13855;13856;13857;13858;13859	14537;14538;14539;14540;14541;14542	14538				6
TGQAPGYSYTAANK	Unmodified	1427.6681	0.66810776	1119	sp|P99999|CYC_HUMAN	yes	yes	0	0	0	0	0					1					24.156	24.156	2	0.020001	5172	20190902_JH_EV_Ubi_3	66.326	24.136	2306200	0	0	0	0	2306200	0	0	0	0			4967	1119	4383	13860	14543	14543				1
TGQAPGYSYTAANK	Deamidation (NQ)	1428.6521	0.65212334	1119	sp|P99999|CYC_HUMAN	yes	yes	0	1	0	0	0								1		25.6	25.6	2	0.010401	6850	20190902_JH_WT_Ubi_2	85.672	44.445	2892800	0	0	0	0	0	0	0	2892800	0			4968	1119	4383	13861	14544	14544	981			1
TGQATVASGIPAGWMGLDCGPESSK	Oxidation (M)	2492.1312	0.13117347	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	41.473	41.473	3	1.3027E-43	10394	20190902_JH_EV_Ubi_2	176.9	142.26	151400000	9873200	7063100	27125000	8922900	10356000	10329000	7749800	35335000	34648000			4969	383	4384	13862;13863;13864;13865;13866;13867;13868;13869;13870	14545;14546;14547;14548;14549;14550;14551;14552;14553;14554	14546			181	10
TGQATVASGIPAGWMGLDCGPESSK	Unmodified	2476.1363	0.13625884	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	45.279	45.279	3	6.2727E-34	13708	20190902_JH_WT_Ubi_2	159.46	132.19	46957000	2274100	2019200	18170000	1434700	1133500	2691800	3034800	8165800	8033300			4970	383	4384	13871;13872;13873;13874;13875;13876;13877;13878;13879	14555;14556;14557;14558;14559;14560;14561;14562;14563;14564	14563				10
TGQATVASGIPAGWMGLDCGPESSKK	Oxidation (M);GlyGly (K)	2734.2691	0.26906393	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	1	1	1	1	1			1	1	1	1	36.689	36.689	3	9.6757E-28	10343	20190902_JH_WT_Ubi_3	158.8	127.34	28064000	1009000	2852800	5266500	0	0	2577900	2393300	5854900	8109400			4971	383	4385	13880;13881;13882;13883;13884;13885;13886	14565;14566;14567;14568;14569;14570;14571;14572	14572		348;349	181	8
TGQATVASGIPAGWMGLDCGPESSKK	GlyGly (K)	2718.2741	0.27414931	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	0	1		1	1							40.115	40.115	3	9.6345E-16	9915	20190821_JH_WT_Ubi	131.33	97.108	6333500	0	2249200	4084300	0	0	0	0	0	0			4972	383	4385	13887;13888	14573;14574;14575	14574		348;349		3
TGQEVVFVAEPDNK	Unmodified	1531.7518	0.75183739	414	sp|P04844-2|RPN2_HUMAN;sp|P04844|RPN2_HUMAN	yes	no	0	0	0	0	0						1				33.873	33.873	2	0.018984	8818	20190902_JH_MUT_Ubi_2	66.393	29.281	895920	0	0	0	0	0	895920	0	0	0			4973	414	4386	13889	14576	14576				0
TGQEYKPGNPPAEIGQNISSNSSASILESK	Unmodified	3102.5106	0.51055107	453	sp|P07814|SYEP_HUMAN	yes	yes	0	0	0	0	1									1	35.847	35.847	3	0.021399	10127	20190902_JH_WT_Ubi_3	48.694	28.663	1022400	0	0	0	0	0	0	0	0	1022400			4974	453	4387	13890	14577	14577				1
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	2 Oxidation (M);GlyGly (K)	4559.1392	0.13917856	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	0	1	2	1	1	1	1		1	1	1	1		43.016	43.016	3;4	6.0471E-11	11264	20190821_JH_WT_Ubi	81.36	65.181	43591000	5118300	7482000	8692100	0	1613500	9402800	9383900	1898100	0			4975	260	4388	13891;13892;13893;13894;13895;13896;13897	14578;14579;14580;14581;14582;14583;14584;14585;14586	14585		249	114;115	9
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	4560.1232	0.12319414	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	1	1	2	1	1									43.267	43.267	3	0.00013775	11433	20190821_JH_EV_Ubi	48.281	24.132	735710	735710	0	0	0	0	0	0	0	0			4976	260	4388	13898	14587	14587	94	249	114;115	1
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	Oxidation (M);GlyGly (K)	4543.1443	0.14426393	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	0	1	1	1		2	1			1	1	1	1	45.281	45.281	3;4	2.3694E-11	13664	20190902_JH_WT_Ubi_2	85.628	63.284	23126000	0	5573900	7549500	0	0	1109200	3919500	2792500	2181900			4977	260	4388	13899;13900;13901;13902;13903;13904;13905	14588;14589;14590;14591;14592;14593;14594;14595	14594		249	114;115	8
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	GlyGly (K);Deamidation (NQ)	4528.1334	0.1333649	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	1	1	0	1						1				47.967	47.967	3	2.2784E-06	13893	20190902_JH_MUT_Ubi_2	65.592	49.669	0	0	0	0	0	0	0	0	0	0			4978	260	4388	13906	14596	14596	94	249		1
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	GlyGly (K)	4527.1493	0.14934931	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	0	1	0	1			1				1			47.952	47.952	3;4	1.6089E-07	12672	20190902_JH_MUT_Ubi_3	62.89	48.336	5328900	0	0	2004500	0	0	0	3324500	0	0			4979	260	4388	13907;13908	14597;14598	14597		249		2
TGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR	Oxidation (M);GlyGly (K);Deamidation (NQ)	4544.1283	0.12827952	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	1	1	1	1							1			44.81	44.81	3	1.7103E-05	11930	20190902_JH_MUT_Ubi_3	55.921	37.301	704130	0	0	0	0	0	0	704130	0	0			4980	260	4388	13909	14599	14599	94	249	114;115	0
TGSPGSPGAGGVQSTAK	Unmodified	1457.711	0.71103521	195	sp|O43237-2|DC1L2_HUMAN;sp|O43237|DC1L2_HUMAN	yes	no	0	0	0	0	0				1						19.988	19.988	2	2.8751E-06	4185	20190902_JH_EV_Ubi_2	108.23	70.724	2733400	0	0	0	2733400	0	0	0	0	0			4981	195	4389	13910	14600	14600				0
TGTAYTFFTPNNIK	Unmodified	1573.7777	0.77765821	603	sp|P17844-2|DDX5_HUMAN;sp|P17844|DDX5_HUMAN	yes	no	0	0	0	0	0									1	40.149	40.149	2	0.0086622	11538	20190902_JH_WT_Ubi_3	76.927	31.766	1833400	0	0	0	0	0	0	0	0	1833400			4982	603	4390	13911	14601	14601				1
TGTITTFEHAHNMR	Oxidation (M)	1630.7522	0.75218852	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	1	0	1	1	1					1	1	20.812	20.812	3	0.022415	5146	20190902_JH_WT_Ubi_3	59.57	19.054	88241000	2901200	2083800	5700500	0	0	0	0	44300000	33255000			4983	545	4391	13912;13913;13914;13915;13916	14602;14603;14604;14605;14606	14606			330	5
TGTITTFEHAHNMR	Unmodified	1614.7573	0.75727389	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0			1						1	23.34	23.34	3	0.022077	4445	20190821_JH_WT_Ubi	56.087	28.677	18242000	0	0	6098200	0	0	0	0	0	12144000			4984	545	4391	13917;13918	14607;14608	14607				2
TGTQPQGKMEVLR	Oxidation (M);GlyGly (K)	1573.7882	0.78823967	1552	sp|Q86UW9-2|DTX2_HUMAN;sp|Q86UW9|DTX2_HUMAN	yes	no	0	0	1	1	1		1								20.434	20.434	3	0.031943	3132	20190821_JH_MUT_Ubi	62.298	24.773	347540	0	347540	0	0	0	0	0	0	0			4985	1552	4392	13919	14609	14609			923	1
TGVHFHPKQTLDFLRSDMANSK	2 Deamidation (NQ)	2530.2275	0.22745711	1474	sp|Q6KC79-2|NIPBL_HUMAN;sp|Q6KC79|NIPBL_HUMAN	yes	no	0	2	0	0	2			1							34.064	34.064	4	0.026433	7690	20190821_JH_WT_Ubi	47.814	20.883	1571900	0	0	1571900	0	0	0	0	0	0			4986	1474	4393	13920	14610	14610	465;1084			0
TGVHHYSGNNIELGTACGK	Unmodified	2013.9327	0.93267208	1068	sp|P62888|RL30_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1	1	1	2	1	22.851	22.851	3;4	1.4144E-30	4792	20190902_JH_MUT_Ubi_3	174.35	118.01	108800000	14390000	0	16135000	13259000	5252500	9838800	8812000	20193000	20921000			4987	1068	4394	13921;13922;13923;13924;13925;13926;13927;13928;13929	14611;14612;14613;14614;14615;14616;14617;14618;14619;14620	14615				10
TGVHHYSGNNIELGTACGK	Deamidation (NQ)	2014.9167	0.91668766	1068	sp|P62888|RL30_HUMAN	yes	yes	0	1	0	0	0			1		1				1	24.366	24.366	3	1.349E-05	5239	20190902_JH_EV_Ubi_3	110.74	72.707	14124000	0	0	991790	0	4182900	0	0	0	8949600			4988	1068	4394	13930;13931;13932	14621;14622;14623	14621	343			3
TGVTGPYVLGTGLILYALSK	Unmodified	2022.1401	0.14012888	672	sp|P24539|AT5F1_HUMAN	yes	yes	0	0	0	0	0	1							1		55.886	55.886	3	9.3436E-24	14752	20190821_JH_EV_Ubi	161.75	105.29	1923000	1176000	0	0	0	0	0	0	746990	0			4989	672	4395	13933;13934	14624;14625	14624				2
TGYSANIIFHTK	Unmodified	1350.6932	0.6932003	1822	sp|Q96SU4-5|OSBL9_HUMAN;sp|Q96SU4-4|OSBL9_HUMAN;sp|Q96SU4-3|OSBL9_HUMAN;sp|Q96SU4-7|OSBL9_HUMAN;sp|Q96SU4-2|OSBL9_HUMAN;sp|Q96SU4|OSBL9_HUMAN;sp|Q96SU4-6|OSBL9_HUMAN	yes	no	0	0	0	0	0		1				1		1		31.683	31.683	3	0.010358	6544	20190821_JH_MUT_Ubi	75.088	44.359	4986100	0	726800	0	0	0	1122500	0	3136700	0			4990	1822	4396	13935;13936;13937	14626;14627;14628	14626				3
THEAEIVEGENHTYCIR	Unmodified	2056.9273	0.92725235	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1					1	1	26.946	26.946	3	2.4342E-10	5335	20190821_JH_WT_Ubi	140.68	119.32	26732000	1191000	482460	7545000	0	0	0	0	11178000	6336100			4991	637	4397	13938;13939;13940;13941;13942	14629;14630;14631;14632;14633	14631				5
THESKDCESESYK	GlyGly (K)	1712.6948	0.6947928	320	sp|O94901-3|SUN1_HUMAN;sp|O94901-9|SUN1_HUMAN	yes	no	0	0	1	0	1		1								11.793	11.793	3	0.021689	1932	20190821_JH_MUT_Ubi	65.495	49.555	365220	0	365220	0	0	0	0	0	0	0			4992	320	4398	13943	14634	14634		299		1
THINIVVIGHVDSGK	Unmodified	1587.8733	0.87328993	1096;1160	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN;sp|Q05639|EF1A2_HUMAN	no	no	0	0	0	0	0	1	3	2			3	3	1	2	28.749	28.749	3	1.1092E-07	6496	20190821_JH_EV_Ubi	137.39	112.2	439700000	19724000	53776000	126950000	0	0	80536000	30975000	51591000	76156000			4993	1096;1160	4399	13944;13945;13946;13947;13948;13949;13950;13951;13952;13953;13954;13955;13956;13957;13958	14635;14636;14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654;14655	14635				21
THIQDNHDGTYTVAYVPDVTGR	Unmodified	2458.1513	0.15131528	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1		1	1	33.047	33.047	3;4	8.6253E-16	9040	20190902_JH_WT_Ubi_3	135.91	98.028	34605000	3316800	1478800	14299000	0	1010000	1380200	0	6642800	6477500			4994	637	4400	13959;13960;13961;13962;13963;13964;13965	14656;14657;14658;14659;14660;14661;14662	14662				7
THLPGFVEQAEALK	Unmodified	1538.8093	0.80929269	723	sp|P30044-2|PRDX5_HUMAN;sp|P30044|PRDX5_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	36.146	36.146	3	6.0625E-11	8979	20190902_JH_MUT_Ubi_3	153.81	91.451	31671000	0	1717200	10542000	0	0	3156400	3174500	7106500	5974500			4995	723	4401	13966;13967;13968;13969;13970;13971	14663;14664;14665;14666;14667;14668	14665				6
THLPLALLPQTLLDQK	Unmodified	1800.0509	0.050919944	902	sp|P50226|ST1A2_HUMAN;sp|P50225|ST1A1_HUMAN	yes	no	0	0	0	0	0	1	1								47.492	47.492	3	7.2634E-08	12906	20190821_JH_EV_Ubi	130.61	77.235	5822100	3717900	2104300	0	0	0	0	0	0	0			4996	902	4402	13972;13973	14669;14670	14669				2
THNSSLEYNIFEGMECR	Oxidation (M)	2101.8833	0.88333862	1376	sp|Q16555-2|DPYL2_HUMAN;sp|Q16555|DPYL2_HUMAN	yes	no	0	0	0	1	0			1	1		1				34.317	34.317	3	0.0030591	7817	20190821_JH_WT_Ubi	81.594	61.831	6461700	0	0	3946600	876140	0	1638900	0	0	0			4997	1376	4403	13974;13975;13976	14671;14672;14673	14673			855	1
THSDQFLVAFK	Unmodified	1291.6561	0.65608651	784	sp|P36542-2|ATPG_HUMAN;sp|P36542|ATPG_HUMAN	yes	no	0	0	0	0	0									1	33.991	33.991	3	0.018006	9459	20190902_JH_WT_Ubi_3	68.132	16.205	1942000	0	0	0	0	0	0	0	0	1942000			4998	784	4404	13977	14674	14674				1
THSQGGYGSQGYK	Unmodified	1368.6058	0.60584185	2204	sp|Q9Y285-2|SYFA_HUMAN;sp|Q9Y285|SYFA_HUMAN	yes	no	0	0	0	0	0			1							13.918	13.918	3	0.0066981	2634	20190821_JH_WT_Ubi	78.287	36.748	194730	0	0	194730	0	0	0	0	0	0			4999	2204	4405	13978	14675	14675				1
THSTSSSLGSGESPFSR	Unmodified	1722.7809	0.78090569	2119	sp|Q9UGV2|NDRG3_HUMAN;sp|Q9UGV2-2|NDRG3_HUMAN;sp|Q9UGV2-3|NDRG3_HUMAN	yes	no	0	0	0	0	0	1							1		25.87	25.87	3	0.0041059	4926	20190821_JH_EV_Ubi	70.451	38.389	2480300	523520	0	0	0	0	0	0	1956700	0			5000	2119	4406	13979;13980	14676;14677	14676				2
THTDTESEASILGDSGEYK	Unmodified	2038.8967	0.89672331	2223	sp|Q9Y3E5|PTH2_HUMAN	yes	yes	0	0	0	0	0	1									30.478	30.478	3	0.018142	6596	20190821_JH_EV_Ubi	48.677	21.648	970720	970720	0	0	0	0	0	0	0	0			5001	2223	4407	13981	14678	14678				1
THTQDAVPLTLGQEFSGYVQQVK	Unmodified	2545.2813	0.28126682	460	sp|P07954-2|FUMH_HUMAN;sp|P07954|FUMH_HUMAN	yes	no	0	0	0	0	0	1	1				1				44.283	44.283	3	3.4082E-06	11831	20190821_JH_EV_Ubi	92.805	54.352	12887000	6419600	3518800	0	0	0	2948500	0	0	0			5002	460	4408	13982;13983;13984	14679;14680;14681	14679				3
THYIVGYNLPSYEYLYNLGDQYALK	Unmodified	2996.4596	0.45962512	413	sp|P04843|RPN1_HUMAN	yes	yes	0	0	0	0	0								1		50.165	50.165	3	3.0507E-12	15016	20190902_JH_WT_Ubi_2	114.19	82.43	3041800	0	0	0	0	0	0	0	3041800	0			5003	413	4409	13985	14682;14683	14683				2
THYPAQQGEYQTHQPVYHK	Unmodified	2311.077	0.077028128	361	sp|O95817|BAG3_HUMAN	yes	yes	0	0	0	0	0	1	1		1	1	1		1	1	20.792	20.792	3;4	0.0058989	3243	20190821_JH_MUT_Ubi	59.862	36.3	21472000	3914500	1432900	0	2479500	4262700	3315400	0	0	6066900			5004	361	4410	13986;13987;13988;13989;13990;13991;13992	14684;14685;14686;14687;14688;14689;14690	14687				7
THYSELTTLTSQYIK	Unmodified	1783.8992	0.89922991	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0						1			1	37.089	37.089	3	3.8391E-06	10521	20190902_JH_WT_Ubi_3	131.08	95.319	12845000	0	0	0	0	0	3977600	0	0	8867500			5005	1332	4411	13993;13994	14691;14692	14692				2
THYSNIEANESEEVR	Unmodified	1776.7915	0.79147037	410	sp|P04632|CPNS1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	23.434	23.434	3	5.8934E-21	4258	20190821_JH_EV_Ubi	174.24	108.34	178360000	13905000	9124400	20658000	16232000	9666300	14265000	15354000	47911000	31245000			5006	410	4412	13995;13996;13997;13998;13999;14000;14001;14002;14003	14693;14694;14695;14696;14697;14698;14699;14700;14701	14693				9
TIAECLADELINAAK	Unmodified	1630.8236	0.82362212	859	sp|P46782|RS5_HUMAN	yes	yes	0	0	0	0	0									1	51.675	51.675	3	2.9487E-06	15073	20190902_JH_WT_Ubi_3	132.06	49.208	852890	0	0	0	0	0	0	0	0	852890			5007	859	4413	14004	14702	14702				1
TIAIIAEGIPEALTR	Unmodified	1566.8981	0.8981077	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	0	0	0	1									48.349	48.349	2	0.0010183	13113	20190821_JH_EV_Ubi	100.09	41.494	1143300	1143300	0	0	0	0	0	0	0	0			5008	946	4414	14005	14703	14703				1
TIATALEYVYKGQLQSAPS	GlyGly (K)	2153.1004	0.10044891	1108	sp|P78537-2|BL1S1_HUMAN;sp|P78537|BL1S1_HUMAN	yes	no	0	0	1	0	1						1	1			46.024	46.024	3	0.0023812	12245	20190902_JH_MUT_Ubi_3	72.676	31.264	3582600	0	0	0	0	0	1975500	1607100	0	0			5009	1108	4415	14006;14007	14704;14705	14705		1103		2
TIDGQQTIIACIESHQFQPK	Unmodified	2313.1423	0.1423305	941	sp|P52907|CAZA1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	41.838	41.838	3	7.5699E-05	10675	20190821_JH_WT_Ubi	92.236	59.255	28329000	0	0	17868000	0	0	0	0	3663400	6797800			5010	941	4416	14008;14009;14010	14706;14707;14708	14706				3
TIELSDDDFLGECECTLGQIVSSK	Unmodified	2715.2255	0.22552736	270	sp|O75131|CPNE3_HUMAN	yes	yes	0	0	0	0	0			1							52.017	52.017	3	0.0027139	14685	20190821_JH_WT_Ubi	80.277	51.141	0	0	0	0	0	0	0	0	0	0			5011	270	4417	14011	14709	14709				1
TIESANQQTDK	Unmodified	1233.5837	0.58370943	314	sp|O76094-2|SRP72_HUMAN;sp|O76094|SRP72_HUMAN	yes	no	0	0	0	0	0			1							16.432	16.432	2	0.03344	3012	20190821_JH_WT_Ubi	61.593	9.7391	1052100	0	0	1052100	0	0	0	0	0	0			5012	314	4418	14012	14710	14710				0
TIGGGDDSFNTFFSETGAGK	Deamidation (NQ)	2007.8698	0.86978027	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	1	0	0	0	1			1						45.584	45.584	2	3.026E-23	11716	20190902_JH_EV_Ubi_2	167.29	119.1	1059800	726130	0	0	333680	0	0	0	0	0			5013	1097;1515;1858	4419	14013;14014	14711;14712	14712	360			2
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	1097;1515;1858	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN	no	no	0	0	0	0	0					1			1	1	45.209	45.209	3	0.00028946	13655	20190902_JH_WT_Ubi_2	83.229	40.709	3881200	0	0	0	0	0	0	0	1368300	2512900			5014	1097;1515;1858	4419	14015;14016;14017	14713;14714;14715	14714				3
TIGSTYMAASGVTPDVNTNGFASSNKEDK	Oxidation (M);GlyGly (K);Deamidation (NQ)	3092.3881	0.38805267	233	sp|O60266-2|ADCY3_HUMAN;sp|O60266|ADCY3_HUMAN	yes	no	0	1	1	1	1				1						34.117	34.117	3	0.0015552	8273	20190902_JH_EV_Ubi_2	65.387	42.854	759580	0	0	0	759580	0	0	0	0	0			5015	233	4420	14018	14716	14716	74	208	102	1
TIGTGLVTNTLAMTEEEK	Oxidation (M)	1922.9507	0.95067313	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	0	1	0			1					1		39.599	39.599	2	7.3213E-203	9715	20190821_JH_WT_Ubi	309.49	244.26	14691000	0	0	8494200	0	0	0	0	6197000	0			5016	883	4421	14019;14020	14717;14718	14717			562	1
TIGTGLVTNTLAMTEEEKNIK	Oxidation (M);GlyGly (K)	2392.2156	0.21555502	883	sp|P49411|EFTU_HUMAN	yes	yes	0	0	1	1	1						1				43.867	43.867	2	0.030799	12641	20190902_JH_MUT_Ubi_2	46.746	19.097	0	0	0	0	0	0	0	0	0	0			5017	883	4422	14021	14719	14719			562	1
TIHGLIYNALK	Unmodified	1241.7132	0.71320746	1232	sp|Q13362-2|2A5G_HUMAN;sp|Q13362-3|2A5G_HUMAN;sp|Q14738-3|2A5D_HUMAN;sp|Q13362|2A5G_HUMAN;sp|Q13362-4|2A5G_HUMAN;sp|Q13362-5|2A5G_HUMAN;sp|Q14738-2|2A5D_HUMAN;sp|Q14738|2A5D_HUMAN	yes	no	0	0	0	0	0			1							33.542	33.542	3	0.010665	7479	20190821_JH_WT_Ubi	79.07	50.362	2403800	0	0	2403800	0	0	0	0	0	0			5018	1232	4423	14022	14720	14720				1
TIHSEQAVFDIYYPTEQVTIQVLPPK	Unmodified	3015.5593	0.55933916	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN	yes	no	0	0	0	0	0	1									48.749	48.749	3	0.01198	13317	20190821_JH_EV_Ubi	45.072	9.8984	818350	818350	0	0	0	0	0	0	0	0			5019	1260	4424	14023	14721	14721				1
TIIQNPTDQQK	Unmodified	1284.6674	0.66737948	2193	sp|Q9UQ80|PA2G4_HUMAN;sp|Q9UQ80-2|PA2G4_HUMAN	yes	no	0	0	0	0	0	1				1					25.496	25.496	2	0.016875	4895	20190821_JH_EV_Ubi	80.24	41.277	4071400	1910000	0	0	0	2161400	0	0	0	0			5020	2193	4425	14024;14025	14722;14723	14722				1
TIKVTTAAAAAATSQDPEQHLTELR	GlyGly (K)	2736.4042	0.40423551	2111	sp|Q9UBW8|CSN7A_HUMAN	yes	yes	0	0	1	0	1		1				1	1			33.97	33.97	4	0.011248	7550	20190821_JH_MUT_Ubi	47.472	23.121	5582600	0	1397000	0	0	0	2556000	1629500	0	0			5021	2111	4426	14026;14027;14028	14724;14725;14726	14724		1985		3
TILPKNNPPTIVHDK	GlyGly (K)	1799.9894	0.98938232	260	sp|O60784-3|TOM1_HUMAN;sp|O60784|TOM1_HUMAN;sp|O60784-2|TOM1_HUMAN;sp|O60784-4|TOM1_HUMAN	yes	no	0	0	1	0	1		1	1	1	1				1	26.289	26.289	3;4	0.01171	5678	20190902_JH_EV_Ubi_3	64.394	26.366	38736000	0	3193800	9587100	1825000	8522000	0	0	0	15608000			5022	260	4427	14029;14030;14031;14032;14033	14727;14728;14729;14730;14731	14728		250		5
TILSNQTVDIPENVDITLKGR	GlyGly (K)	2439.2969	0.29691689	757	sp|P32969|RL9_HUMAN	yes	yes	0	0	1	0	1		1	1			1		1	1	41.977	41.977	3	7.2669E-95	10753	20190821_JH_WT_Ubi	237.16	197.23	100230000	0	22695000	44102000	0	0	14728000	0	9247600	9453000			5023	757	4428	14034;14035;14036;14037;14038	14732;14733;14734;14735;14736;14737;14738	14735		729		7
TIQEVAGYVLIALNTVER	Unmodified	1988.0942	0.094241321	382	sp|P00533|EGFR_HUMAN;sp|P00533-4|EGFR_HUMAN;sp|P00533-3|EGFR_HUMAN;sp|P00533-2|EGFR_HUMAN	yes	no	0	0	0	0	0			1					1		56.53	56.53	3	0.0021052	16611	20190902_JH_WT_Ubi_2	72.968	40.876	2245400	0	0	1588800	0	0	0	0	656570	0			5024	382	4429	14039;14040	14739;14740	14740				2
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	1515;1858	sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0								1		47.222	47.222	2	1.9249E-12	14221	20190902_JH_WT_Ubi_2	167.84	107.35	5092700	0	0	0	0	0	0	0	5092700	0			5025	1515;1858	4430	14041	14741	14741				1
TIQQCCENILLNAAWLK	Unmodified	2074.034	0.033966025	983	sp|P55786-2|PSA_HUMAN;sp|P55786|PSA_HUMAN	yes	no	0	0	0	0	0		1								49.008	49.008	3	0.01277	12880	20190821_JH_MUT_Ubi	57.148	20.51	692410	0	692410	0	0	0	0	0	0	0			5026	983	4431	14042	14742	14742				1
TIQQNITEQASVMQKR	GlyGly (K);2 Deamidation (NQ)	1989.979	0.97895357	1788	sp|Q96JH7|VCIP1_HUMAN	yes	yes	0	2	1	0	1				1						29.671	29.671	3	0.033441	6838	20190902_JH_EV_Ubi_2	43.03	7.3733	41374000	0	0	0	41374000	0	0	0	0	0			5027	1788	4432	14043	14743	14743	570;1188;1189;1190			0
TISFDIPPQEILTK	Unmodified	1600.8712	0.87122424	693	sp|P27105|STOM_HUMAN	yes	yes	0	0	0	0	0					1					46.403	46.403	2	0.011865	11726	20190902_JH_EV_Ubi_3	74.698	31.047	952540	0	0	0	0	952540	0	0	0	0			5028	693	4433	14044	14744	14744				0
TISHVIIGLK	Unmodified	1079.6703	0.67028001	2201	sp|Q9Y265|RUVB1_HUMAN;sp|Q9Y265-2|RUVB1_HUMAN	yes	no	0	0	0	0	0		1	1	1	1		1	1	1	30.255	30.255	3	0.00061021	8508	20190902_JH_WT_Ubi_2	131.62	91.558	44294000	0	3089500	10760000	1097000	1033600	0	5169500	12567000	10578000			5029	2201	4434	14045;14046;14047;14048;14049;14050;14051	14745;14746;14747;14748;14749;14750;14751	14750				7
TISQHQISTSIITSTQK	Unmodified	1871.9953	0.99525556	396	sp|P03915|NU5M_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	29.696	29.696	3	4.2065E-53	6413	20190821_JH_EV_Ubi	213.94	132.75	73111000	9529900	2287100	10687000	12496000	6059800	3753400	2822700	10545000	14930000			5030	396	4435	14052;14053;14054;14055;14056;14057;14058;14059;14060	14752;14753;14754;14755;14756;14757;14758;14759;14760	14752				9
TITLEVEPSDTIENVKAK	GlyGly (K)	2100.095	0.095029182	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		2	1	1	32.427	32.427	3	9.2024E-82	8274	20190821_JH_MUT_Ubi	242.19	168.36	1532700000	189440000	191840000	394200000	47573000	74748000	0	269620000	196190000	169070000			5031	1074	4436	14061;14062;14063;14064;14065;14066;14067;14068;14069	14761;14762;14763;14764;14765;14766;14767;14768;14769	14764		1050;1056		9
TITMLDEQKEQLNR	Oxidation (M);GlyGly (K)	1847.9047	0.90472599	109	sp|O00161|SNP23_HUMAN;sp|O00161-2|SNP23_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	27.051	27.051	3	1.9798E-05	5899	20190902_JH_EV_Ubi_3	130.19	88.626	76200000	7250300	3782000	6194100	8869600	8256800	6348400	5989000	14242000	15267000			5032	109	4437	14070;14071;14072;14073;14074;14075;14076;14077;14078	14770;14771;14772;14773;14774;14775;14776;14777;14778;14779	14772		94	50	10
TITMLDEQKEQLNR	GlyGly (K)	1831.9098	0.90981137	109	sp|O00161|SNP23_HUMAN;sp|O00161-2|SNP23_HUMAN	yes	no	0	0	1	0	1	1	1	1					1	1	30.587	30.587	3	0.0059296	8558	20190902_JH_WT_Ubi_2	80.312	50.738	26385000	2506600	2688800	8212000	0	0	0	0	6207800	6769900			5033	109	4437	14079;14080;14081;14082;14083	14780;14781;14782;14783;14784	14783		94		5
TITVALADGGRPDNTGR	Unmodified	1712.8806	0.88056015	888	sp|P49588|SYAC_HUMAN;sp|P49588-2|SYAC_HUMAN	yes	no	0	0	0	0	1		1	1		1	1	1			29.355	29.355	3	0.00078907	5762	20190821_JH_MUT_Ubi	104.9	52.115	16216000	0	2626700	4744900	0	3023500	3172200	2648700	0	0			5034	888	4438	14084;14085;14086;14087;14088	14785;14786;14787;14788;14789	14786				5
TIVHYSPNLVFSGIEAIQK	Unmodified	2115.1364	0.13644049	986	sp|P56199|ITA1_HUMAN	yes	yes	0	0	0	0	0								1	1	44.112	44.112	3	3.0133E-05	12797	20190902_JH_WT_Ubi_3	105.77	60.634	4440100	0	0	0	0	0	0	0	1510500	2929600			5035	986	4439	14089;14090	14790;14791;14792;14793	14792				4
TKAEATIPLVPGR	GlyGly (K)	1465.8253	0.8252771	1871	sp|Q9BT67|NFIP1_HUMAN	yes	yes	0	0	1	0	1						1	1			30.245	30.245	3	0.020548	7060	20190902_JH_MUT_Ubi_3	66.538	29.691	15680000	0	0	0	0	0	7546100	8134300	0	0			5036	1871	4440	14091;14092	14794;14795	14795		1816		2
TKAEATIPLVPGRDEDFVGR	GlyGly (K)	2284.1812	0.18115885	1871	sp|Q9BT67|NFIP1_HUMAN	yes	yes	0	0	1	0	2	1									34.947	34.947	3	0.014464	8331	20190821_JH_EV_Ubi	73.953	45.405	1433300	1433300	0	0	0	0	0	0	0	0			5037	1871	4441	14093	14796	14796		1816		1
TKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAR	Oxidation (M);GlyGly (K)	4057.9076	0.90758612	963	sp|P54725-2|RD23A_HUMAN;sp|P54725-3|RD23A_HUMAN;sp|P54725|RD23A_HUMAN	yes	no	0	0	1	1	1			1		1		1			29.709	29.709	4	2.3876E-05	6746	20190902_JH_MUT_Ubi_3	57.488	37.037	11923000	0	0	4135000	0	4058800	0	3729200	0	0			5038	963	4442	14094;14095;14096	14797;14798;14799	14798		932	602	3
TKEEINELNR	GlyGly (K)	1358.679	0.6790068	14	sp|P78386|KRT85_HUMAN;CON__P78386;sp|O43790|KRT86_HUMAN;CON__O43790;sp|P78385|KRT83_HUMAN;CON__Q6NT21;CON__P78385;sp|Q14533|KRT81_HUMAN;CON__Q14533;sp|A6NCN2|KR87P_HUMAN	yes	no	0	0	1	0	1		1								21.761	21.761	3	0.025246	3398	20190821_JH_MUT_Ubi	70.412	7.6122	789560	0	789560	0	0	0	0	0	0	0		+	5039	14	4443	14097	14800	14800		39		1
TKEGLEEEQSTSGR	GlyGly (K)	1663.7649	0.76492127	1440	sp|Q5T3U5-2|MRP7_HUMAN;sp|Q5T3U5|MRP7_HUMAN	yes	no	0	0	1	0	1	1	1								18.411	18.411	3	0.0055778	3075	20190821_JH_EV_Ubi	81.128	51.8	702140	453070	249070	0	0	0	0	0	0	0			5040	1440	4444	14098;14099	14801;14802;14803	14801		1456		3
TKFETEQALR	GlyGly (K)	1335.6783	0.67827852	7;477;15	CON__P08727;sp|P08727|K1C19_HUMAN;CON__Q04695;sp|Q04695|K1C17_HUMAN;CON__Q9QWL7	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	23.577	23.577	3	2.2897E-22	4922	20190902_JH_EV_Ubi_2	187.97	123.76	653970000	38345000	53356000	52527000	65442000	62385000	96072000	104280000	142980000	38582000		+	5041	7;477;15	4445	14100;14101;14102;14103;14104;14105;14106;14107;14108	14804;14805;14806;14807;14808;14809;14810;14811;14812	14805		20		9
TKFETEQALR	Unmodified	1221.6354	0.63535107	7;477;15	CON__P08727;sp|P08727|K1C19_HUMAN;CON__Q04695;sp|Q04695|K1C17_HUMAN;CON__Q9QWL7	no	no	0	0	0	0	1		1								23.248	23.248	3	0.035111	3667	20190821_JH_MUT_Ubi	94.465	31.392	1280400	0	1280400	0	0	0	0	0	0	0		+	5042	7;477;15	4445	14109	14813	14813				1
TKGVDEVTIVNILTNR	GlyGly (K)	1885.0269	0.026890038	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN	yes	no	0	0	1	0	1		1	1			1	1	1	1	43.048	43.048	3	1.2582E-32	10806	20190821_JH_MUT_Ubi	186.77	124.04	71102000	0	14339000	12045000	0	0	13744000	16077000	4913400	9983200			5043	446	4446	14110;14111;14112;14113;14114;14115	14814;14815;14816;14817;14818;14819	14814		438		6
TKIYHPNIDEK	GlyGly (K)	1470.7467	0.74669243	1095	sp|P68036-2|UB2L3_HUMAN;sp|P68036|UB2L3_HUMAN;sp|P68036-3|UB2L3_HUMAN;sp|A0A1B0GUS4|UB2L5_HUMAN	yes	no	0	0	1	0	1		1	1				1	1		21.181	21.181	3	0.0008602	4419	20190902_JH_MUT_Ubi_3	121.36	67.793	16029000	0	2159400	3549100	0	0	0	4713500	5607200	0			5044	1095	4447	14116;14117;14118;14119	14820;14821;14822;14823	14821		1094;1095		4
TKLLNGPGDVETGTSITVPQK	GlyGly (K)	2268.1961	0.19614021	1984	sp|Q9HC07-2|TM165_HUMAN;sp|Q9HC07|TM165_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			33.961	33.961	3	8.6543E-16	8088	20190821_JH_EV_Ubi	141.74	96.907	100900000	23104000	12613000	0	20245000	15440000	16809000	12691000	0	0			5045	1984	4448	14120;14121;14122;14123;14124;14125	14824;14825;14826;14827;14828;14829	14824		1909		6
TKLLNGPGDVETGTSITVPQK	GlyGly (K);Deamidation (NQ)	2269.1802	0.1801558	1984	sp|Q9HC07-2|TM165_HUMAN;sp|Q9HC07|TM165_HUMAN	yes	no	0	1	1	0	1	1	1			1	1	1			34.522	34.522	3	4.3919E-07	8981	20190902_JH_MUT_Ubi_2	116.98	58.162	13658000	3199200	2309200	0	0	2254700	2991100	2903700	0	0			5046	1984	4448	14126;14127;14128;14129;14130	14830;14831;14832;14833;14834	14833	630	1909		5
TKQLTGPNLVMQSTGVLTATR	Oxidation (M);GlyGly (K)	2345.2373	0.23729352	656	sp|P22794|EVI2A_HUMAN;sp|P22794-2|EVI2A_HUMAN	yes	no	0	0	1	1	1									1	35.637	35.637	3	0.00053518	9987	20190902_JH_WT_Ubi_3	77.959	51.616	1410600	0	0	0	0	0	0	0	0	1410600			5047	656	4449	14131	14835;14836	14835		630	409	2
TKSSSEEVLER	GlyGly (K)	1377.6736	0.67358707	1829	sp|Q96T83|SL9A7_HUMAN	yes	yes	0	0	1	0	1							1			19.031	19.031	3	0.027473	4073	20190902_JH_MUT_Ubi_3	66.326	19.024	1386500	0	0	0	0	0	0	1386500	0	0			5048	1829	4450	14132	14837	14837		1789		1
TKSTGGAPTFNVTVTK	GlyGly (K)	1721.8948	0.89481323	451	sp|P07737|PROF1_HUMAN	yes	yes	0	0	1	0	1		1								28.241	28.241	3	0.02026	5208	20190821_JH_MUT_Ubi	57.788	21.018	813480	0	813480	0	0	0	0	0	0	0			5049	451	4451	14133	14838	14838		452;455		1
TKTLSGGIQVNGPR	GlyGly (K);Deamidation (NQ)	1541.8162	0.81616898	755	sp|P32455|GBP1_HUMAN	yes	yes	0	1	1	0	1								1		18.764	18.764	3	0.034812	4655	20190902_JH_WT_Ubi_2	80.522	27.509	9061300	0	0	0	0	0	0	0	9061300	0			5050	755	4452	14134	14839	14839	266;889			1
TLAEHQQLIPLVEKAK	GlyGly (K)	1931.084	0.084010986	2242	sp|Q9Y5K5-3|UCHL5_HUMAN;sp|Q9Y5K5|UCHL5_HUMAN	yes	no	0	0	1	0	1		1		1						31.597	31.597	3	0.014914	7362	20190902_JH_EV_Ubi_2	61.649	24.636	2635200	0	1280700	0	1354500	0	0	0	0	0			5051	2242	4453	14135;14136	14840;14841	14840		2081;2082		2
TLAESALQLLYTAK	Unmodified	1520.845	0.84500949	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	0	0			1							50.163	50.163	2	0.0074006	14021	20190821_JH_WT_Ubi	86.463	51.66	4786000	0	0	4786000	0	0	0	0	0	0			5052	2230	4454	14137	14842	14842				0
TLAGDVHIVR	Unmodified	1079.6087	0.60874239	2104	sp|Q9UBQ0|VPS29_HUMAN;sp|Q9UBQ0-2|VPS29_HUMAN	yes	no	0	0	0	0	0	1		1	1			1	1	1	27.306	27.306	3	0.0075963	7137	20190902_JH_WT_Ubi_3	90.827	39.481	30831000	1066600	0	7512900	1286400	0	0	2881900	9492800	8590700			5053	2104	4455	14138;14139;14140;14141;14142;14143	14843;14844;14845;14846;14847;14848	14848				6
TLAKMSESQDIK	Oxidation (M);GlyGly (K)	1479.7239	0.72390808	118	sp|O00238|BMR1B_HUMAN;sp|O00238-2|BMR1B_HUMAN	yes	no	0	0	1	1	1							1			18.271	18.271	3	0.025701	3926	20190902_JH_MUT_Ubi_3	65.395	34.523	0	0	0	0	0	0	0	0	0	0			5054	118	4456	14144	14849	14849		105	53	1
TLASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV	GlyGly (K)	3876.8364	0.83637824	1838	sp|Q99576-4|T22D3_HUMAN;sp|Q99576|T22D3_HUMAN;sp|Q99576-3|T22D3_HUMAN	yes	no	0	0	1	0	1		1				1				47.355	47.355	3	2.1309E-05	12419	20190821_JH_MUT_Ubi	69.142	50.177	1783900	0	1141100	0	0	0	642870	0	0	0			5055	1838	4457	14145;14146	14850;14851	14850		1799		2
TLAYLLPAIVHINHQPYLER	Unmodified	2360.3005	0.30048612	1729	sp|Q92841-1|DDX17_HUMAN;sp|Q92841-3|DDX17_HUMAN;sp|Q92841-2|DDX17_HUMAN;sp|Q92841|DDX17_HUMAN	yes	no	0	0	0	0	0		1	1			1	3	1	1	43.96	43.96	3;4	0.00092265	11296	20190821_JH_MUT_Ubi	74.12	44.037	246300000	0	12605000	88246000	0	0	13411000	40357000	29266000	62418000			5056	1729	4458	14147;14148;14149;14150;14151;14152;14153;14154	14852;14853;14854;14855;14856;14857;14858;14859	14852				7
TLDGGLNVIQLETAVGAAIK	Unmodified	1982.1048	0.10480601	1392	sp|Q16851-2|UGPA_HUMAN;sp|Q16851|UGPA_HUMAN	yes	no	0	0	0	0	0			1							53.553	53.553	3	0.0014325	15255	20190821_JH_WT_Ubi	71.969	37.484	1682100	0	0	1682100	0	0	0	0	0	0			5057	1392	4459	14155	14860	14860				1
TLDPNSAFLHTLDQQKPRVSK	Deamidation (NQ)	2395.2496	0.24957276	705	sp|P27987|IP3KB_HUMAN	yes	yes	0	1	0	0	2				1						47.983	47.983	3	0.033339	11890	20190902_JH_EV_Ubi_2	53.453	8.1059	689470	0	0	0	689470	0	0	0	0	0			5058	705	4460	14156	14861	14861	249			1
TLEDPDLNVR	Unmodified	1170.5881	0.58806652	1557	sp|Q86VP6|CAND1_HUMAN;sp|Q86VP6-2|CAND1_HUMAN	yes	no	0	0	0	0	0							1			31.555	31.555	2	0.02951	7536	20190902_JH_MUT_Ubi_3	70.1	31.324	1451700	0	0	0	0	0	0	1451700	0	0			5059	1557	4461	14157	14862	14862				0
TLEEDEEELFK	Unmodified	1380.6297	0.62965657	844	sp|P43487-2|RANG_HUMAN;sp|P43487|RANG_HUMAN	yes	no	0	0	0	0	0			1					1		39.777	39.777	2	0.015545	11809	20190902_JH_WT_Ubi_2	80.755	44.373	9805600	0	0	5807600	0	0	0	0	3998000	0			5060	844	4462	14158;14159	14863;14864	14864				0
TLEGELHDLR	Unmodified	1181.6041	0.60405094	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	0	0	0				1			1			29.691	29.691	3	0.028408	6834	20190902_JH_MUT_Ubi_3	60.064	30.29	14923000	0	0	0	6086400	0	0	8836800	0	0			5061	390;391	4463	14160;14161	14865;14866	14866				2
TLEVVSPSQSVTGSAGHTPYYQSPTDEK	Unmodified	2964.3989	0.39887536	860	sp|P46821|MAP1B_HUMAN	yes	yes	0	0	0	0	0			1					1	1	34.663	34.663	3	0.0011344	9630	20190902_JH_WT_Ubi_3	57.432	26.161	10747000	0	0	3038100	0	0	0	0	4100600	3608100			5062	860	4464	14162;14163;14164	14867;14868;14869	14869				3
TLFASPPAKSTANGNLLEPR	GlyGly (K);Deamidation (NQ)	2198.1331	0.13314602	93	sp|A8CG34|P121C_HUMAN	yes	yes	0	1	1	0	1	1									37.679	37.679	3	0.036752	9282	20190821_JH_EV_Ubi	48.376	6.9532	0	0	0	0	0	0	0	0	0	0			5063	93	4465	14165	14870	14870	37;38	81		1
TLFASPPAKSTANGNLLEPR	GlyGly (K);2 Deamidation (NQ)	2199.1172	0.11716161	93	sp|A8CG34|P121C_HUMAN	yes	yes	0	2	1	0	1							1			36.9	36.9	3	0.023262	9360	20190902_JH_MUT_Ubi_3	60.062	30.722	0	0	0	0	0	0	0	0	0	0			5064	93	4465	14166	14871	14871	37;38	81		1
TLFGLHLSQK	Unmodified	1142.6448	0.64479354	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	0	0		1	2					1	1	33.978	33.978	2;3	0.018563	7618	20190821_JH_WT_Ubi	69.65	44.775	179870000	0	1697300	127640000	0	0	0	0	27765000	22769000			5065	746	4466	14167;14168;14169;14170;14171	14872;14873;14874;14875;14876	14873				4
TLFSNIVLSGGSTLFK	Unmodified	1682.9243	0.92432245	1017	sp|P61163|ACTZ_HUMAN	yes	yes	0	0	0	0	0						1				51.881	51.881	3	0.0064694	14691	20190902_JH_MUT_Ubi_2	85.988	37.877	1449600	0	0	0	0	0	1449600	0	0	0			5066	1017	4467	14172	14877	14877				0
TLHEWLQQHGIPGLQGVDTR	Unmodified	2284.1713	0.17126286	701	sp|P27708|PYR1_HUMAN	yes	yes	0	0	0	0	0						1				40.173	40.173	3	0.011737	11217	20190902_JH_MUT_Ubi_2	52.19	7.4017	1049200	0	0	0	0	0	1049200	0	0	0			5067	701	4468	14173	14878	14878				1
TLHNLVIQYASQGR	Unmodified	1598.8529	0.85288884	1179	sp|Q9H0B6-2|KLC2_HUMAN;sp|Q07866-8|KLC1_HUMAN;sp|Q07866-2|KLC1_HUMAN;sp|Q07866-3|KLC1_HUMAN;sp|Q07866|KLC1_HUMAN;sp|Q07866-7|KLC1_HUMAN;sp|Q07866-5|KLC1_HUMAN;sp|Q07866-10|KLC1_HUMAN;sp|Q9H0B6|KLC2_HUMAN;sp|Q07866-6|KLC1_HUMAN;sp|Q07866-4|KLC1_HUMAN;sp|Q07866-9|KLC1_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	33.085	33.085	3	0.00016675	7352	20190821_JH_WT_Ubi	111.12	51.868	30039000	0	1351100	10888000	0	0	1693000	0	9110600	6996800			5068	1179	4469	14174;14175;14176;14177;14178	14879;14880;14881;14882;14883	14881				5
TLHPAPNAPQPCQVSSLSER	Unmodified	2188.0695	0.069499909	1612	sp|Q8N3E9|PLCD3_HUMAN	yes	yes	0	0	0	0	0		1				1	1	1		29.62	29.62	3	0.0029034	5823	20190821_JH_MUT_Ubi	65.765	27.188	5981900	0	1848600	0	0	0	0	1948400	2184800	0			5069	1612	4470	14179;14180;14181;14182	14884;14885;14886;14887	14884				4
TLHPAVHAGILAR	Unmodified	1354.7834	0.78335271	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	0	0				1		1	1	1	1	25.077	25.077	3	0.00039932	5681	20190902_JH_MUT_Ubi_2	111.52	79.536	103980000	0	0	0	4741300	0	11293000	10351000	38248000	39351000			5070	746	4471	14183;14184;14185;14186;14187	14888;14889;14890;14891;14892	14889				5
TLHPDLGTDK	Unmodified	1095.556	0.55603811	373	sp|P00338|LDHA_HUMAN;sp|P00338-3|LDHA_HUMAN;sp|P00338-4|LDHA_HUMAN;sp|P00338-5|LDHA_HUMAN;sp|P00338-2|LDHA_HUMAN	yes	no	0	0	0	0	0		1	1	1	1		1	1	1	22.444	22.444	3	1.3989E-06	5866	20190902_JH_WT_Ubi_2	153.97	85.747	314330000	0	12048000	49368000	3175100	4311000	0	23656000	108950000	112820000			5071	373	4472	14188;14189;14190;14191;14192;14193;14194	14893;14894;14895;14896;14897;14898;14899	14898				7
TLHYECIVLVK	Unmodified	1373.7377	0.73770765	2152	sp|Q9UKK9|NUDT5_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	34.79	34.79	3	1.3627E-06	7842	20190821_JH_MUT_Ubi	148.91	100.94	48225000	3863300	3661900	10644000	2697400	3474900	5021700	4517900	7591000	6752700			5072	2152	4473	14195;14196;14197;14198;14199;14200;14201;14202;14203	14900;14901;14902;14903;14904;14905;14906;14907;14908	14903				9
TLIPPQPPDVASPR	Unmodified	1486.8144	0.81437807	1927	sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN	yes	no	0	0	0	0	0			1						1	23.254	23.254	3	0.020216	4418	20190821_JH_WT_Ubi	57.802	13.502	13058000	0	0	3525000	0	0	0	0	0	9533200			5073	1927	4474	14204;14205	14909;14910	14909				2
TLIPPQPPDVASPRVESSMR	Oxidation (M);Deamidation (NQ)	2193.11	0.10996774	1927	sp|Q9H0E3-2|SP130_HUMAN;sp|Q9H0E3-3|SP130_HUMAN	yes	no	0	1	0	1	1								1		45.786	45.786	2	0.028242	13782	20190902_JH_WT_Ubi_2	49.12	27.571	0	0	0	0	0	0	0	0	0	0			5074	1927	4475	14206	14911	14911	1244		1053	1
TLITVAHTDGNYLGNSWHEILK	Unmodified	2481.2652	0.26522283	2258	sp|Q9Y6D6|BIG1_HUMAN	no	no	0	0	0	0	0			1							41.021	41.021	3	0.00017183	10362	20190821_JH_WT_Ubi	81.017	42.6	6952800	0	0	6952800	0	0	0	0	0	0			5075	2258	4476	14207	14912	14912				1
TLKATASSSAQEMEQQLAER	Oxidation (M);GlyGly (K)	2308.0965	0.09650252	1975	sp|Q9H9Q2-2|CSN7B_HUMAN;sp|Q9H9Q2|CSN7B_HUMAN	yes	no	0	0	1	1	1	1	1		1	1	1	2			26.723	26.723	3	5.5249E-18	5257	20190821_JH_EV_Ubi	148.06	76.366	4271900	827260	728680	0	0	634100	1545900	535980	0	0			5076	1975	4477	14208;14209;14210;14211;14212;14213;14214	14913;14914;14915;14916;14917;14918;14919	14913		1903	1074	7
TLKATASSSAQEMEQQLAER	GlyGly (K)	2292.1016	0.1015879	1975	sp|Q9H9Q2-2|CSN7B_HUMAN;sp|Q9H9Q2|CSN7B_HUMAN	yes	no	0	0	1	0	1		1								34.085	34.085	3	0.00047093	7387	20190821_JH_MUT_Ubi	105.79	55.862	0	0	0	0	0	0	0	0	0	0			5077	1975	4477	14215	14920	14920		1903		1
TLKLTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M);GlyGly (K)	3179.5955	0.59548345	1099;448	sp|P68371|TBB4B_HUMAN;sp|P04350|TBB4A_HUMAN;sp|Q9BVA1|TBB2B_HUMAN;sp|Q13885|TBB2A_HUMAN;sp|P07437|TBB5_HUMAN	no	no	0	0	1	1	1			1							43.824	43.824	4	0.021044	11462	20190821_JH_WT_Ubi	41.047	16.072	3845500	0	0	3845500	0	0	0	0	0	0			5078	1099;448	4478	14216	14921	14921		450	251	0
TLKSQGDMQDLNGNNQSVTR	Oxidation (M);GlyGly (K);Deamidation (NQ)	2336.0663	0.066265024	812	sp|P40763-3|STAT3_HUMAN;sp|P40763-2|STAT3_HUMAN;sp|P40763|STAT3_HUMAN	yes	no	0	1	1	1	1	1				1					23.042	23.042	3	1.4656E-17	4825	20190902_JH_EV_Ubi_3	151.28	107.43	4129200	2362900	0	0	0	1766300	0	0	0	0			5079	812	4479	14217;14218	14922;14923	14923	285;286;287;914;915	789	518	2
TLKSQGDMQDLNGNNQSVTR	Oxidation (M);GlyGly (K);3 Deamidation (NQ)	2338.0343	0.034296194	812	sp|P40763-3|STAT3_HUMAN;sp|P40763-2|STAT3_HUMAN;sp|P40763|STAT3_HUMAN	yes	no	0	3	1	1	1		2								24.128	24.128	3	0.017958	3895	20190821_JH_MUT_Ubi	56.327	30.783	0	0	0	0	0	0	0	0	0	0			5080	812	4479	14219;14220	14924;14925	14925	285;286;287;914;915	789	518	2
TLKSQGDMQDLNGNNQSVTR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2337.0503	0.050280609	812	sp|P40763-3|STAT3_HUMAN;sp|P40763-2|STAT3_HUMAN;sp|P40763|STAT3_HUMAN	yes	no	0	2	1	1	1						1				23.456	23.456	3	5.58E-05	5248	20190902_JH_MUT_Ubi_2	100.95	59.625	489510	0	0	0	0	0	489510	0	0	0			5081	812	4479	14221	14926	14926	285;286;287;914;915	789	518	1
TLLEGSGLESIISIIHSSLAEPR	Unmodified	2421.3115	0.31150432	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0	1	1					1			55.336	55.336	3	1.3991E-12	14791	20190821_JH_MUT_Ubi	133.93	112.26	12559000	1976200	9066400	0	0	0	0	1516000	0	0			5082	881	4480	14222;14223;14224	14927;14928;14929	14928				3
TLLENTAITIGR	Unmodified	1300.7351	0.73506511	1735	sp|Q92973-3|TNPO1_HUMAN;sp|Q92973-2|TNPO1_HUMAN;sp|Q92973|TNPO1_HUMAN	no	no	0	0	0	0	0		1								39.563	39.563	2	0.022615	9239	20190821_JH_MUT_Ubi	60.167	21.391	843660	0	843660	0	0	0	0	0	0	0			5083	1735	4481	14225	14930	14930				0
TLLMIKFAEKSLDR	Unmodified	1663.9331	0.93311299	1964	sp|Q9H792|PEAK1_HUMAN	yes	yes	0	0	0	0	2		1								36.028	36.028	3	0.027713	8127	20190821_JH_MUT_Ubi	61.532	26.328	0	0	0	0	0	0	0	0	0	0			5084	1964	4482	14226	14931	14931				1
TLLPHDPTADVFVTPAEEK	Unmodified	2079.0524	0.052436086	1681	sp|Q8TDN6|BRX1_HUMAN	yes	yes	0	0	0	0	0									1	39.983	39.983	3	0.0018339	11498	20190902_JH_WT_Ubi_3	72.184	39.368	1439900	0	0	0	0	0	0	0	0	1439900			5085	1681	4483	14227	14932	14932				1
TLLQGSGCLAGIYLEDTK	Unmodified	1937.9768	0.9768283	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0	1					1				45.433	45.433	2;3	0.00070639	13157	20190902_JH_MUT_Ubi_2	82.709	55.065	5044700	4453300	0	0	0	0	591400	0	0	0			5086	1332	4484	14228;14229	14933;14934	14934				1
TLMMFVTVSGSPTEK	Oxidation (M)	1642.7946	0.79463018	1303	sp|Q14696|MESD_HUMAN	yes	yes	0	0	0	1	0								1		41.17	41.17	2	0.0022626	12227	20190902_JH_WT_Ubi_2	94.402	66.538	0	0	0	0	0	0	0	0	0	0			5087	1303	4485	14230	14935	14935			813	1
TLMNLGGLAVAR	Oxidation (M)	1230.6754	0.67544174	796	sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN	yes	no	0	0	0	1	0			1							36.333	36.333	2	2.3819E-27	8423	20190821_JH_WT_Ubi	212.21	145.41	25934000	0	0	25934000	0	0	0	0	0	0			5088	796	4486	14231	14936	14936			509	0
TLNAHEHFVTSLDFHK	Unmodified	1894.9326	0.93259572	838	sp|P43034|LIS1_HUMAN	yes	yes	0	0	0	0	0	1		1	1				1	1	29.389	29.389	4;5	0.0055367	6316	20190821_JH_EV_Ubi	67.685	39.823	25729000	2290800	0	15206000	790590	0	0	0	3368900	4073600			5089	838	4487	14232;14233;14234;14235;14236	14937;14938;14939;14940;14941	14937				5
TLNDELEIIEGMK	Oxidation (M)	1519.744	0.74397482	515	sp|P10809|CH60_HUMAN	yes	yes	0	0	0	1	0			1	1	1	1	1	1	1	42.901	42.901	2;3	3.3782E-08	12495	20190902_JH_WT_Ubi_3	149.69	99.234	16431000	0	0	10437000	452600	346840	399170	396740	2039600	2359600			5090	515	4488	14237;14238;14239;14240;14241;14242;14243	14942;14943;14944;14945;14946;14947;14948	14948			303	6
TLNETELTELQSQISDTSVVLSMDNSR	Oxidation (M)	3025.4398	0.43975389	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	1	0	1		1		1	1		1	1	50.415	50.415	3	2.1086E-64	14734	20190902_JH_WT_Ubi_3	202.44	176.04	38356000	1708100	0	15586000	0	0	1118400	0	8023500	11920000		+	5091	8;19	4489	14244;14245;14246;14247;14248;14249	14949;14950;14951;14952;14953;14954;14955	14954			17	7
TLNETELTELQSQISDTSVVLSMDNSR	Unmodified	3009.4448	0.44483927	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	0	0	0		1	1							52.875	52.875	3	5.4014E-44	14929	20190821_JH_WT_Ubi	173.18	149.69	6097900	0	859240	5238700	0	0	0	0	0	0		+	5092	8;19	4489	14250;14251	14956;14957;14958	14958				3
TLNIPVLTVIEWSQVHFLR	Unmodified	2264.2681	0.26812336	1271	sp|Q14108|SCRB2_HUMAN	yes	yes	0	0	0	0	0			1							55.402	55.402	3	0.0049472	15904	20190821_JH_WT_Ubi	62.658	34.008	4940400	0	0	4940400	0	0	0	0	0	0			5093	1271	4490	14252	14959	14959				1
TLNNKFASFIDK	GlyGly (K)	1510.778	0.77799256	19;8;3;6	CON__P08729;sp|Q9NSB2|KRT84_HUMAN;CON__Q9NSB2;CON__Q6ISB0;sp|P08729|K2C7_HUMAN;CON__Q3KNV1;sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN;CON__P50446;sp|P12035|K2C3_HUMAN;CON__P12035;CON__Q8VED5;CON__Q6IFZ6;sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN;CON__Q9H552	no	no	0	0	1	0	1		1				1	1	1	1	34.768	34.768	3	0.0014365	9081	20190902_JH_MUT_Ubi_2	109.6	75.599	40837000	0	7435600	0	0	0	8891400	7581500	8482700	8445800		+	5094	8;19;3;6	4491	14253;14254;14255;14256;14257	14960;14961;14962;14963;14964	14961		8;30		5
TLPSWGQALLSQDFELLCR	Unmodified	2233.1201	0.1201385	471	sp|P08582|TRFM_HUMAN	yes	yes	0	0	0	0	0			1					1		55.244	55.244	3	0.01014	16389	20190902_JH_WT_Ubi_2	56.036	31.995	1194700	0	0	0	0	0	0	0	1194700	0			5095	471	4492	14258;14259	14965;14966	14966				2
TLQAGLSSNHVSHGEVLR	Unmodified	1903.9864	0.98642221	327	sp|O95163|ELP1_HUMAN	yes	yes	0	0	0	0	0	1									25.438	25.438	3	0.017953	4808	20190821_JH_EV_Ubi	60.209	30.869	0	0	0	0	0	0	0	0	0	0			5096	327	4493	14260	14967	14967				1
TLQALEFHTVPFQLLAR	Unmodified	1983.0942	0.094181742	1187	sp|Q08380|LG3BP_HUMAN	yes	yes	0	0	0	0	0	1				1					48.048	48.048	3	2.604E-14	13133	20190821_JH_EV_Ubi	155.57	127.48	3184300	2179100	0	0	0	1005200	0	0	0	0			5097	1187	4494	14261;14262	14968;14969	14968				2
TLQEKELTCQILEQKIK	2 GlyGly (K);2 Deamidation (NQ)	2331.1992	0.19917668	1238	sp|Q13439-3|GOGA4_HUMAN;sp|Q13439-4|GOGA4_HUMAN;sp|Q13439|GOGA4_HUMAN;sp|Q13439-5|GOGA4_HUMAN	yes	no	0	2	2	0	2					1					38.848	38.848	3	0.02361	9650	20190902_JH_EV_Ubi_3	58.814	25.41	1109900	0	0	0	0	1109900	0	0	0	0			5098	1238	4495	14263	14970	14970	1013;1014	1303;1304;1305		1
TLQEVTQLSQEAQR	Unmodified	1629.8322	0.83221298	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	33.675	33.675	3	4.0397E-06	9283	20190902_JH_WT_Ubi_3	133.47	53.777	10018000	0	767750	2777000	0	0	0	0	3494700	2978700			5099	818	4496	14264;14265;14266;14267	14971;14972;14973;14974	14974				4
TLQGLEIELQSQLSMK	Oxidation (M)	1832.9554	0.95536458	7;477	CON__P08727;CON__P19001;sp|P13646-2|K1C13_HUMAN;sp|P13646-3|K1C13_HUMAN;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__A2A4G1;sp|P13646|K1C13_HUMAN;CON__P13646-1;sp|P08727|K1C19_HUMAN	no	no	0	0	0	1	0	1	1	1	1	1	1	1	1	1	46.669	46.669	3	9.0678E-96	14135	20190902_JH_WT_Ubi_2	249.36	183.34	459730000	81599000	100260000	70650000	10297000	16941000	59760000	46090000	27927000	46202000		+	5100	7;477	4497	14268;14269;14270;14271;14272;14273;14274;14275;14276	14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985	14984			13	11
TLQGLEIELQSQLSMK	Unmodified	1816.9604	0.96044996	7;477	CON__P08727;CON__P19001;sp|P13646-2|K1C13_HUMAN;sp|P13646-3|K1C13_HUMAN;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__A2A4G1;sp|P13646|K1C13_HUMAN;CON__P13646-1;sp|P08727|K1C19_HUMAN	no	no	0	0	0	0	0	1	1	1			1	1			48.714	48.714	3	1.4597E-95	13286	20190821_JH_EV_Ubi	244	183.7	48839000	6208800	22090000	17726000	0	0	1735000	1079000	0	0		+	5101	7;477	4497	14277;14278;14279;14280;14281	14986;14987;14988;14989;14990	14986				5
TLQGLEIELQSQLSMK	Oxidation (M);Deamidation (NQ)	1833.9394	0.93938016	7;477	CON__P08727;CON__P19001;sp|P13646-2|K1C13_HUMAN;sp|P13646-3|K1C13_HUMAN;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__A2A4G1;sp|P13646|K1C13_HUMAN;CON__P13646-1;sp|P08727|K1C19_HUMAN	no	no	0	1	0	1	0						1	1	1	1	48.089	48.089	3	1.8502E-09	13885	20190902_JH_MUT_Ubi_2	135.55	78.678	9417500	0	0	0	0	0	3279100	2400100	1740600	1997800		+	5102	7;477	4497	14282;14283;14284;14285	14991;14992;14993;14994	14991	716;717;718		13	4
TLQGLEIELQSQLSMKAALEDTLAETEAR	Oxidation (M);GlyGly (K);Deamidation (NQ)	3318.6501	0.65008102	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	1	1	1	1	2									50.897	50.897	3	0.00029137	13811	20190821_JH_EV_Ubi	88.278	65.677	0	0	0	0	0	0	0	0	0	0		+	5103	7;477	4498	14286;14287	14995;14996	14996	716;717;718	21	13	2
TLQGLEIELQSQLSMKAALEDTLAETEAR	Oxidation (M);GlyGly (K)	3317.6661	0.66606543	7;477	CON__P08727;sp|P08727|K1C19_HUMAN	no	no	0	0	1	1	1		1								50.777	50.777	3	4.5319E-07	13478	20190821_JH_MUT_Ubi	92.412	69.852	1567900	0	1567900	0	0	0	0	0	0	0		+	5104	7;477	4498	14288	14997	14997		21	13	1
TLRPALVGVVK	Unmodified	1151.739	0.73902828	1978	sp|Q9HAV7|GRPE1_HUMAN	yes	yes	0	0	0	0	1	1	1	1		1		1	1	1	30.011	30.011	3	1.1391E-09	8394	20190902_JH_WT_Ubi_2	164.33	141.61	47353000	3462900	1168900	6366700	0	4309900	0	2377400	11995000	17673000			5105	1978	4499	14289;14290;14291;14292;14293;14294;14295	14998;14999;15000;15001;15002;15003;15004	15003				6
TLSDYNIQKESTLHLVLR	GlyGly (K)	2243.191	0.19099525	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1	3	1	3	2	1	1	3		1	33.894	33.894	3;4	0.00010164	773	20190902_JH_MUT_Ubi_3	103.6	79.01	134900000000	26703000	15810000000	63428000000	9883300000	3359800000	5899100	27057000	0	42363000000			5106	1074	4500	14296;14297;14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310	15005;15006;15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020	15015		1053		14
TLSDYNIQKESTLHLVLR	Unmodified	2129.1481	0.14806781	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	0	0	1				1	1	1	1			36.341	36.341	4	0.00098743	9782	20190902_JH_MUT_Ubi_2	82.942	44.281	59710000	0	0	0	12626000	9646300	25305000	12134000	0	0			5107	1074	4500	14311;14312;14313;14314	15021;15022;15023;15024	15023				4
TLSDYNIQKESTLHLVLR	GlyGly (K);Deamidation (NQ)	2244.175	0.17501084	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	1	1	0	1								1	1	38.331	38.331	4	0.0057804	11326	20190902_JH_WT_Ubi_2	62.237	37.643	1371300000	0	0	0	0	0	0	0	847120000	524160000			5108	1074	4500	14315;14316	15025;15026;15027	15025	347;968	1053		3
TLSHNLLVSEVYNQLK	Unmodified	1856.9996	0.99961265	1256	sp|Q13620-3|CUL4B_HUMAN;sp|Q13620-1|CUL4B_HUMAN;sp|Q13620|CUL4B_HUMAN	yes	no	0	0	0	0	0		1	1						1	40.523	40.523	3	0.00060641	10143	20190821_JH_WT_Ubi	95.067	44.845	5133500	0	763240	3133100	0	0	0	0	0	1237200			5109	1256	4501	14317;14318;14319	15028;15029;15030	15029				3
TLSPGDSFSTFDTPYCR	Unmodified	1949.8465	0.84654241	2006	sp|Q9NQR4|NIT2_HUMAN	yes	yes	0	0	0	0	0								1	1	42.108	42.108	2	0.0018523	12633	20190902_JH_WT_Ubi_2	89.301	66.767	5141800	0	0	0	0	0	0	0	2440200	2701600			5110	2006	4502	14320;14321	15031;15032	15031				0
TLSQLSQQEGIKM	Oxidation (M);GlyGly (K)	1591.7876	0.78757097	789	sp|P36897-3|TGFR1_HUMAN;sp|P36897|TGFR1_HUMAN;sp|P36897-2|TGFR1_HUMAN	yes	no	0	0	1	1	1	1		1	1	1				1	29.92	29.92	2	1.647E-11	6483	20190821_JH_EV_Ubi	169.52	121.65	4893700	1235000	0	0	1315700	1054500	0	0	0	1288600			5111	789	4503	14322;14323;14324;14325;14326	15033;15034;15035;15036;15037	15033		770	501	2
TLSSPSNRPSGETSVPPPPAVGR	Unmodified	2289.1713	0.17132244	1702	sp|Q8WWM7-6|ATX2L_HUMAN;sp|Q8WWM7-8|ATX2L_HUMAN;sp|Q8WWM7-5|ATX2L_HUMAN;sp|Q8WWM7-4|ATX2L_HUMAN;sp|Q8WWM7-9|ATX2L_HUMAN;sp|Q8WWM7-2|ATX2L_HUMAN;sp|Q8WWM7|ATX2L_HUMAN;sp|Q8WWM7-3|ATX2L_HUMAN	yes	no	0	0	0	0	1			1	1	1			1		28.818	28.818	3	0.0098908	5991	20190821_JH_WT_Ubi	64.203	24.966	9430500	0	0	2088500	1491900	781100	0	0	5069000	0			5112	1702	4504	14327;14328;14329;14330	15038;15039;15040;15041	15040				4
TLTAAAVSGAQPILSK	Unmodified	1526.8668	0.86680757	254	sp|O60664-4|PLIN3_HUMAN;sp|O60664-3|PLIN3_HUMAN;sp|O60664|PLIN3_HUMAN	yes	no	0	0	0	0	0						1	1	1	1	36.319	36.319	2	0.0058266	9160	20190902_JH_MUT_Ubi_3	77.644	30.825	57421000	0	0	0	0	0	4017300	3639700	27581000	22182000			5113	254	4505	14331;14332;14333;14334	15042;15043;15044;15045	15043				0
TLTAVHDAILEDLVFPSEIVGK	Unmodified	2366.2733	0.2733279	1036	sp|P62081|RS7_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	52.73	52.73	3	6.9624E-16	15735	20190902_JH_WT_Ubi_2	138.07	86.465	20012000	0	2522800	9231800	0	0	0	0	5534400	2723000			5114	1036	4506	14335;14336;14337;14338	15046;15047;15048;15049	15048				4
TLTDELAALQITGVK	Unmodified	1571.877	0.8770379	1633	sp|Q8NBQ5|DHB11_HUMAN	yes	yes	0	0	0	0	0			1						1	48.904	48.904	3	0.00078011	14340	20190902_JH_WT_Ubi_3	112.62	64.78	0	0	0	0	0	0	0	0	0	0			5115	1633	4507	14339;14340	15050;15051	15051				2
TLTGKEIEIDIEPTDK	GlyGly (K)	1914.9786	0.97860244	1369	sp|Q15843|NEDD8_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1			35.864	35.864	3	1.0296E-13	9549	20190902_JH_MUT_Ubi_2	153.94	99.945	40262000	6178500	8515300	0	2944800	0	13408000	9216100	0	0			5116	1369	4508	14341;14342;14343;14344;14345	15052;15053;15054;15055;15056	15055		1409		5
TLTGKTITLEVEPSDTIENVK	GlyGly (K)	2401.2588	0.25880005	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	1	2	4	3	4	2	7	9	4	3	38.056	38.056	3;4	2.0224E-45	11192	20190902_JH_WT_Ubi_2	188.54	125.4	33663000000	4366800000	4696600000	8847500000	1446800000	1536800000	3068400000	3328700000	2262400000	4108700000			5117	1074	4509	14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383	15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120	15116		1055;1056		63
TLTGKTITLEVEPSDTIENVK	GlyGly (K);Deamidation (NQ)	2402.2428	0.24281563	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	1	1	0	1								1	1	38.897	38.897	3	1.2332E-09	11039	20190902_JH_WT_Ubi_3	123.83	76.075	204380000	0	0	0	0	0	0	0	79661000	124720000			5118	1074	4509	14384;14385	15121;15122;15123	15122	348	1055;1056		3
TLTGKTITLEVEPSDTIENVKAK	GlyGly (K)	2600.3909	0.39087685	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	1	0	2		1								35.362	35.362	4	0.023695	7894	20190821_JH_MUT_Ubi	42.123	15.068	1286200	0	1286200	0	0	0	0	0	0	0			5119	1074	4510	14386	15124	15124		1050;1055;1056		1
TLTGKTITLEVEPSDTIENVKAK	2 GlyGly (K)	2714.4338	0.4338043	1074	sp|P62979|RS27A_HUMAN;sp|P62987|RL40_HUMAN;sp|P0CG47|UBB_HUMAN;sp|P0CG48|UBC_HUMAN	yes	no	0	0	2	0	2						1				34.871	34.871	4	0.0057103	9226	20190902_JH_MUT_Ubi_2	68.134	37.798	4043000	0	0	0	0	0	4043000	0	0	0			5120	1074	4510	14387	15125	15125		1050;1055;1056		1
TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK	Unmodified	3057.5693	0.56925192	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	0	0			1		1	1		1	1	48.243	48.243	3	1.3813E-21	13381	20190821_JH_WT_Ubi	132.39	106.72	14281000	0	0	7948000	0	486880	491900	0	2307500	3046400			5121	1015	4511	14388;14389;14390;14391;14392	15126;15127;15128;15129;15130	15128				5
TLTPEQGCRNLSLK	2 Deamidation (NQ)	1617.8032	0.80322103	43		yes	no	0	2	0	0	1				1						26.385	26.385	3	0.036384	5729	20190902_JH_EV_Ubi_2	46.069	6.2843	28369000	0	0	0	28369000	0	0	0	0	0	+		5122	43	4512	14393	15131	15131	16			0
TLTTVQGIADDYDK	Deamidation (NQ)	1539.7304	0.73043325	258	sp|P41567|EIF1_HUMAN;sp|O60739|EIF1B_HUMAN	yes	no	0	1	0	0	0								1		36.238	36.238	2	0.014175	10577	20190902_JH_WT_Ubi_2	76.927	45.056	6626300	0	0	0	0	0	0	0	6626300	0			5123	258	4513	14394	15132	15132	791			0
TLVDEVQELEAK	Unmodified	1372.7086	0.70857559	2209	sp|Q9Y2Q0-3|AT8A1_HUMAN;sp|Q9Y2Q0-2|AT8A1_HUMAN;sp|Q9Y2Q0|AT8A1_HUMAN	yes	no	0	0	0	0	0			1					1		36.799	36.799	3	0.01393	8660	20190821_JH_WT_Ubi	70.728	1.4529	97265000	0	0	35925000	0	0	0	0	61340000	0			5124	2209	4514	14395;14396	15133;15134	15133				2
TLVLSNLSYSATEETLQEVFEK	Unmodified	2500.2585	0.2584657	618	sp|P19338|NUCL_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1		1	1	54.075	54.075	3	2.5196E-37	15591	20190902_JH_WT_Ubi_3	181.23	133.83	28524000	1509700	2593000	17582000	0	0	1166200	0	2596300	3077000			5125	618	4515	14397;14398;14399;14400;14401;14402	15135;15136;15137;15138;15139;15140	15140				6
TLYFADTYLKDSSR	GlyGly (K)	1792.8632	0.86317875	1479	sp|Q6P1M3-2|L2GL2_HUMAN;sp|Q6P1M3|L2GL2_HUMAN	yes	no	0	0	1	0	1		1					1			36.657	36.657	3	0.012751	9189	20190902_JH_MUT_Ubi_3	70.628	39.63	3649600	0	1903700	0	0	0	0	1745900	0	0			5126	1479	4516	14403;14404	15141;15142	15142		1494		2
TLYGFGG	Unmodified	713.33844	0.33844077	1057	sp|P62805|H4_HUMAN	yes	yes	0	0	0	0	0							1		1	40.968	40.968	1	0.0038917	10643	20190902_JH_MUT_Ubi_3	109.94	109.94	27226000	0	0	0	0	0	0	1821300	0	25404000			5127	1057	4517	14405;14406	15143;15144	15143				2
TMAAPQDSLRPGEEDEGMQLLQTKDSMAK	3 Oxidation (M);GlyGly (K)	3338.5065	0.50647002	1894	sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN	yes	no	0	0	1	3	2	1	1	1	1		1				30.915	30.915	3;4	0.00014478	7549	20190902_JH_MUT_Ubi_2	70.407	44.25	100360000	13913000	6561000	67991000	10869000	0	1025000	0	0	0			5128	1894	4518	14407;14408;14409;14410;14411	15145;15146;15147;15148;15149	15148		1833	1036;1037;1038	5
TMAAPQDSLRPGEEDEGMQLLQTKDSMAK	Oxidation (M);GlyGly (K)	3306.5166	0.51664078	1894	sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN	yes	no	0	0	1	1	2		1	1				1			35.835	35.835	4	0.00026537	8333	20190821_JH_WT_Ubi	68.207	42.722	36431000	0	4769100	28400000	0	0	0	3262000	0	0			5129	1894	4518	14412;14413;14414	15150;15151;15152	15152		1833	1036;1037;1038	3
TMAAPQDSLRPGEEDEGMQLLQTKDSMAK	3 Oxidation (M);GlyGly (K);Deamidation (NQ)	3339.4905	0.49048561	1894	sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN	yes	no	0	1	1	3	2								1		31.631	31.631	4	0.0080636	8926	20190902_JH_WT_Ubi_2	63.563	35.159	22899000	0	0	0	0	0	0	0	22899000	0			5130	1894	4518	14415	15153	15153	1227	1833	1036;1037;1038	1
TMAAPQDSLRPGEEDEGMQLLQTKDSMAK	2 Oxidation (M);GlyGly (K)	3322.5116	0.5115554	1894	sp|Q9BX79-3|STRA6_HUMAN;sp|Q9BX79|STRA6_HUMAN;sp|Q9BX79-6|STRA6_HUMAN;sp|Q9BX79-5|STRA6_HUMAN;sp|Q9BX79-4|STRA6_HUMAN	yes	no	0	0	1	2	2									1	33.741	33.741	3	0.00029232	9384	20190902_JH_WT_Ubi_3	64.701	42.46	2076900	0	0	0	0	0	0	0	0	2076900			5131	1894	4518	14416	15154	15154		1833	1036;1037;1038	1
TMLEDLGMDDEGDDDPVPLPNVNAAILKK	2 Oxidation (M);GlyGly (K);Deamidation (NQ)	3271.5112	0.51120428	1082	sp|P63208|SKP1_HUMAN;sp|P63208-2|SKP1_HUMAN	yes	no	0	1	1	2	1		1				1				45.308	45.308	3	4.2344E-09	13184	20190902_JH_MUT_Ubi_2	112.37	70.679	912460	0	0	0	0	0	912460	0	0	0			5132	1082	4519	14417;14418	15155;15156	15156	351;352	1076;1077	665;666	1
TMLEDLGMDDEGDDDPVPLPNVNAAILKK	2 Oxidation (M);GlyGly (K)	3270.5272	0.52718869	1082	sp|P63208|SKP1_HUMAN;sp|P63208-2|SKP1_HUMAN	yes	no	0	0	1	2	1								1		45.679	45.679	3	0.00017994	13736	20190902_JH_WT_Ubi_2	64.377	34.443	1199000	0	0	0	0	0	0	0	1199000	0			5133	1082	4519	14419	15157	15157		1076;1077	665;666	1
TMLITHMQDLQEVTQDLHYENFR	2 Oxidation (M)	2893.3375	0.33747785	1316	sp|Q15019|SEPT2_HUMAN;sp|Q15019-3|SEPT2_HUMAN;sp|Q15019-2|SEPT2_HUMAN	yes	no	0	0	0	2	0			1							39.114	39.114	4	0.010367	9588	20190821_JH_WT_Ubi	58.082	31.167	3739900	0	0	3739900	0	0	0	0	0	0			5134	1316	4520	14420	15158;15159	15158			822;823	2
TMPLTSTSLTIGSLALAGMPFLTGFYSK	2 Oxidation (M)	2936.4915	0.49151887	396	sp|P03915|NU5M_HUMAN	yes	yes	0	0	0	2	0			1							55.661	55.661	3	0.0016439	15980	20190821_JH_WT_Ubi	55.063	27.102	2495600	0	0	2495600	0	0	0	0	0	0			5135	396	4521	14421	15160	15160			188;189	1
TMSLQQVINAR	Oxidation (M);Deamidation (NQ)	1276.6445	0.64453555	2169	sp|Q9ULV0|MYO5B_HUMAN	yes	yes	0	1	0	1	0			1							30.767	30.767	2	0.034239	6551	20190821_JH_WT_Ubi	51.059	9.6327	45374000	0	0	45374000	0	0	0	0	0	0			5136	2169	4522	14422	15161	15161	1310;1311			1
TNCNVAVINVGAPAAGMNAAVR	Oxidation (M)	2185.0732	0.073205078	1136	sp|Q01813|PFKAP_HUMAN;sp|Q01813-2|PFKAP_HUMAN	yes	no	0	0	0	1	0	2	1		1	1	1	1		1	35.902	35.902	2;3	2.0073E-36	8859	20190821_JH_EV_Ubi	171.25	112.53	37592000	6258100	3060500	0	4886900	3573000	4431200	3917100	0	11465000			5137	1136	4523	14423;14424;14425;14426;14427;14428;14429;14430	15162;15163;15164;15165;15166;15167;15168;15169	15162			708	8
TNEAQAIETAR	Unmodified	1202.5891	0.58912916	1013	sp|P61088|UBE2N_HUMAN;sp|Q5JXB2|UE2NL_HUMAN	yes	no	0	0	0	0	0								1		24.143	24.143	2	0.00020809	6354	20190902_JH_WT_Ubi_2	139.32	70.048	3362900	0	0	0	0	0	0	0	3362900	0			5138	1013	4524	14431	15170	15170				1
TNEVKSGGAVEPLGTR	GlyGly (K)	1727.8802	0.8802258	278	sp|O75312|ZPR1_HUMAN	yes	yes	0	0	1	0	1			1		1			1	1	24.323	24.323	3	6.573E-08	6267	20190902_JH_WT_Ubi_3	132.25	70.901	45465000	0	0	9769700	0	1352000	0	0	23711000	10632000			5139	278	4525	14432;14433;14434;14435	15171;15172;15173;15174	15174		265		4
TNHIGHTGYLNTVTVSPDGSLCASGGK	Unmodified	2742.3031	0.30314125	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	1	31.597	31.597	3;4	1.6491E-34	8973	20190902_JH_WT_Ubi_2	161.41	113.69	143020000	31489000	9562600	7606500	20076000	11594000	2442700	13363000	8338200	38551000			5140	1085	4526	14436;14437;14438;14439;14440;14441;14442;14443;14444	15175;15176;15177;15178;15179;15180;15181;15182;15183	15182				9
TNHIGHTGYLNTVTVSPDGSLCASGGK	Deamidation (NQ)	2743.2872	0.28715684	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	1	0	0	0				2					1	33.026	33.026	4	0.0022202	8983	20190902_JH_WT_Ubi_3	51.628	17.013	6865600	0	0	0	2925900	0	0	0	0	3939700			5141	1085	4526	14445;14446;14447	15184;15185;15186	15186	354			2
TNHLVTVEGGWPQFGVGAEICAR	Unmodified	2497.2172	0.21722678	522	sp|P11177|ODPB_HUMAN;sp|P11177-2|ODPB_HUMAN;sp|P11177-3|ODPB_HUMAN	yes	no	0	0	0	0	0		1								43.926	43.926	3	0.0055048	11065	20190821_JH_MUT_Ubi	55.744	22.763	1051700	0	1051700	0	0	0	0	0	0	0			5142	522	4527	14448	15187	15187				1
TNIVTASVDAINFHDK	Unmodified	1743.8792	0.87916317	107	sp|O00154-5|BACH_HUMAN;sp|O00154-2|BACH_HUMAN;sp|O00154-3|BACH_HUMAN;sp|O00154-6|BACH_HUMAN;sp|O00154-4|BACH_HUMAN;sp|O00154-7|BACH_HUMAN;sp|O00154|BACH_HUMAN	yes	no	0	0	0	0	0		1								38.915	38.915	3	0.010159	9080	20190821_JH_MUT_Ubi	62.077	15.04	1577100	0	1577100	0	0	0	0	0	0	0			5143	107	4528	14449	15188	15188				1
TNLATGIPSSKVK	GlyGly (K)	1428.7936	0.79364262	1752	sp|Q96A57|TM230_HUMAN;sp|Q96A57-2|TM230_HUMAN	yes	no	0	0	1	0	1		1	1			2	1	1	1	25.478	25.478	2;3	0.00048561	6605	20190902_JH_WT_Ubi_3	113.69	59.689	55544000	0	4232900	7183300	0	0	13589000	5898500	8394000	16246000			5144	1752	4529	14450;14451;14452;14453;14454;14455;14456	15189;15190;15191;15192;15193;15194;15195	15195		1739;1740		6
TNLIVNYLPQNMTQDELR	Oxidation (M)	2177.0787	0.078667612	1362	sp|Q15717|ELAV1_HUMAN;sp|Q15717-2|ELAV1_HUMAN	yes	no	0	0	0	1	0	1									43.528	43.528	3	0.019976	11527	20190821_JH_EV_Ubi	50.831	14.234	527090	527090	0	0	0	0	0	0	0	0			5145	1362	4530	14457	15196	15196			849	1
TNLPNPSVDVKGIGDELYNPETHK	GlyGly (K)	2750.3511	0.3511373	1966	sp|Q9H7F0|AT133_HUMAN;sp|Q9H7F0-2|AT133_HUMAN	yes	no	0	0	1	0	1	1									38.575	38.575	4	0.0011243	9593	20190821_JH_EV_Ubi	66.732	30.759	14993000	14993000	0	0	0	0	0	0	0	0			5146	1966	4531	14458	15197	15197		1896		1
TNPPGGKGSGIFDESTPVQTR	GlyGly (K)	2258.0927	0.092737771	1971	sp|Q9H910-2|JUPI2_HUMAN;sp|Q9H910|JUPI2_HUMAN;sp|Q9H910-3|JUPI2_HUMAN	yes	no	0	0	1	0	1		1				1	1			30.199	30.199	3	1.6272E-05	6100	20190821_JH_MUT_Ubi	88.951	54.454	8245600	0	2320700	0	0	0	1917800	4007100	0	0			5147	1971	4532	14459;14460;14461	15198;15199;15200	15198		1902		3
TNQELQEINR	Unmodified	1243.6157	0.61567826	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	0	0	0						1				24.846	24.846	2	0.0015616	5612	20190902_JH_MUT_Ubi_2	125.74	55.929	19690000	0	0	0	0	0	19690000	0	0	0			5148	446	4533	14462	15201	15201				1
TNQELQEINR	Deamidation (NQ)	1244.5997	0.59969384	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	1	0	0	0							1			25.903	25.903	2	0.030081	5689	20190902_JH_MUT_Ubi_3	67.214	25.766	1382400	0	0	0	0	0	0	1382400	0	0			5149	446	4533	14463	15202	15202	834			0
TNTSWCIHVNNWLQNTFAAKHNNK	2 GlyGly (K);2 Deamidation (NQ)	3127.4319	0.43186401	1897	sp|Q9BXM9-2|FSD1L_HUMAN;sp|Q9BXM9|FSD1L_HUMAN	yes	no	0	2	2	0	1								1		39.164	39.164	3	0.0333	11556	20190902_JH_WT_Ubi_2	45.784	16.337	0	0	0	0	0	0	0	0	0	0			5150	1897	4534	14464	15203	15203	602;603;1229			1
TNVANFPGHSGPITSIAFSENGYYLATAADDSSVK	Deamidation (NQ)	3601.6849	0.68488662	2174	sp|Q9UMS4|PRP19_HUMAN	yes	yes	0	1	0	0	0			1							46.853	46.853	3	0.00084705	12787	20190821_JH_WT_Ubi	51.242	29.294	2673300	0	0	2673300	0	0	0	0	0	0			5151	2174	4535	14465	15204	15204	693			1
TNVLGHLQQGGAPTPFDR	Unmodified	1906.965	0.96495848	604	sp|P17858|PFKAL_HUMAN;sp|P17858-2|PFKAL_HUMAN	yes	no	0	0	0	0	0			1			1	1	1	1	34.949	34.949	3	6.9849E-05	9771	20190902_JH_WT_Ubi_3	103.87	61.551	27973000	0	0	8757200	0	0	1998000	2062400	7384400	7770700			5152	604	4536	14466;14467;14468;14469;14470	15205;15206;15207;15208;15209;15210	15210				6
TPAALAALSLTGSGTPPTAANYPSSSR	Unmodified	2558.2976	0.29764517	2192	sp|Q9UQ35|SRRM2_HUMAN	yes	yes	0	0	0	0	0								1		44.713	44.713	3	0.0093406	13432	20190902_JH_WT_Ubi_2	45.941	1.9949	1397100	0	0	0	0	0	0	0	1397100	0			5153	2192	4537	14471	15211	15211				1
TPAEVVSTCDITFACVSDPKAAK	GlyGly (K)	2580.22	0.21998847	1413	sp|Q49A26-5|GLYR1_HUMAN;sp|Q49A26-4|GLYR1_HUMAN;sp|Q49A26-3|GLYR1_HUMAN;sp|Q49A26|GLYR1_HUMAN;sp|Q49A26-2|GLYR1_HUMAN	yes	no	0	0	1	0	1		1				1				38.059	38.059	3	7.8645E-46	8869	20190821_JH_MUT_Ubi	188.09	150.51	3157800	0	1639400	0	0	0	1518400	0	0	0			5154	1413	4538	14472;14473	15212;15213	15212		1431;1432		2
TPAILEASAGAIQNLCAGR	Unmodified	1911.9836	0.98364501	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	0	0	0						1				45.172	45.172	2	0.00036805	13128	20190902_JH_MUT_Ubi_2	111.83	76.713	0	0	0	0	0	0	0	0	0	0			5155	257	4539	14474	15214	15214				1
TPALKYQQLFEDIR	GlyGly (K)	1834.9577	0.95774784	761	sp|P33991|MCM4_HUMAN	yes	yes	0	0	1	0	1	1	1				1				41.163	41.163	3	0.0022975	10060	20190821_JH_MUT_Ubi	92.457	48.696	4640800	1234300	836940	0	0	0	2569600	0	0	0			5156	761	4540	14475;14476;14477	15215;15216;15217	15216		744		3
TPAQYDASELK	Unmodified	1221.5877	0.58773217	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	0	0	0		1								27.147	27.147	2	5.7331E-11	4807	20190821_JH_MUT_Ubi	181.4	110.85	22199000	0	22199000	0	0	0	0	0	0	0			5157	446	4541	14478	15218	15218				0
TPAQYDASELK	Deamidation (NQ)	1222.5717	0.57174776	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	1	0	0	0							1			27.564	27.564	2	0.024794	6226	20190902_JH_MUT_Ubi_3	75.566	30.585	2996300	0	0	0	0	0	0	2996300	0	0			5158	446	4541	14479	15219	15219	835			0
TPAQYDASELKASMK	Oxidation (M);GlyGly (K)	1768.8302	0.83016406	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	1	1						1				25.376	25.376	3	0.0088321	5798	20190902_JH_MUT_Ubi_2	73.758	49.716	1112800	0	0	0	0	0	1112800	0	0	0			5159	446	4542	14480	15220	15220		436;444	248	1
TPASPVVHIR	Unmodified	1075.6138	0.61382777	559	sp|P14866|HNRPL_HUMAN	yes	yes	0	0	0	0	0		1					1	1	1	24.32	24.32	3	0.012	6250	20190902_JH_WT_Ubi_3	79.986	40.733	6312900	0	1071200	0	0	0	0	2125400	1875600	1240700			5160	559	4543	14481;14482;14483;14484	15221;15222;15223;15224	15224				4
TPAVEGLTEAEEEELRAELTK	Unmodified	2314.154	0.15400062	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN;sp|O43399-6|TPD54_HUMAN	yes	no	0	0	0	0	1								1	1	43.438	43.438	3	0.001659	13082	20190902_JH_WT_Ubi_2	78.917	45.609	11107000	0	0	0	0	0	0	0	5217100	5890400			5161	202	4544	14485;14486	15225;15226;15227	15225				3
TPAVSISCLELSNNLEKK	GlyGly (K)	2116.0834	0.083418639	2261	sp|Q9Y6M5|ZNT1_HUMAN	yes	yes	0	0	1	0	1			1							37.54	37.54	3	0.00049683	8963	20190821_JH_WT_Ubi	90.453	57.595	3236200	0	0	3236200	0	0	0	0	0	0			5162	2261	4545	14487	15228	15228		2095;2096		1
TPEFEEFNGKPDSLFFNDGQR	GlyGly (K)	2587.1615	0.16154562	1415	sp|Q4KMQ2-3|ANO6_HUMAN;sp|Q4KMQ2|ANO6_HUMAN;sp|Q4KMQ2-2|ANO6_HUMAN;sp|Q4KMQ2-4|ANO6_HUMAN	yes	no	0	0	1	0	1		1		1						43.249	43.249	3	0.011405	10914	20190902_JH_EV_Ubi_2	55.453	26.803	1900200	0	1381700	0	518510	0	0	0	0	0			5163	1415	4546	14488;14489	15229;15230	15229		1437		2
TPEFEEFNGKPDSLFFNDGQR	GlyGly (K);Deamidation (NQ)	2588.1456	0.1455612	1415	sp|Q4KMQ2-3|ANO6_HUMAN;sp|Q4KMQ2|ANO6_HUMAN;sp|Q4KMQ2-2|ANO6_HUMAN;sp|Q4KMQ2-4|ANO6_HUMAN	yes	no	0	1	1	0	1		1								44.508	44.508	3	0.017055	11247	20190821_JH_MUT_Ubi	74.698	48.895	855720	0	855720	0	0	0	0	0	0	0			5164	1415	4546	14490	15231	15231	449	1437		1
TPELNLDQFHDK	Unmodified	1455.6994	0.69940789	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	33.284	33.284	3	8.6149E-06	8521	20190902_JH_MUT_Ubi_2	140.01	105.47	38094000	1971700	2401800	7078200	1418300	1933500	3648300	3891000	8501600	7249400			5165	704	4547	14491;14492;14493;14494;14495;14496;14497;14498;14499	15232;15233;15234;15235;15236;15237;15238;15239;15240	15236				9
TPFLLSGTSYK	Unmodified	1212.639	0.63903946	975	sp|P55084-2|ECHB_HUMAN;sp|P55084|ECHB_HUMAN	yes	no	0	0	0	0	0									1	37.839	37.839	2	0.0011883	10754	20190902_JH_WT_Ubi_3	117.7	63.541	11260000	0	0	0	0	0	0	0	0	11260000			5166	975	4548	14500	15241	15241				1
TPFLLVGTQIDLR	Unmodified	1471.8399	0.83986454	1005	sp|P60953|CDC42_HUMAN;sp|P60953-1|CDC42_HUMAN	yes	no	0	0	0	0	0	1									49.768	49.768	2	0.019548	13513	20190821_JH_EV_Ubi	67.456	29.054	1574400	1574400	0	0	0	0	0	0	0	0			5167	1005	4549	14501	15242	15242				0
TPGAATASASGAAEDGACGCLPNPGTFEECHR	Unmodified	3218.3452	0.34515878	370	sp|O96008|TOM40_HUMAN;sp|O96008-2|TOM40_HUMAN	yes	no	0	0	0	0	0			1							35.093	35.093	3	3.8621E-08	8033	20190821_JH_WT_Ubi	89.299	68.54	2305900	0	0	2305900	0	0	0	0	0	0			5168	370	4550	14502	15243;15244	15243				2
TPGHQNSVQPGAASPSNPCPATR	Unmodified	2330.0822	0.08218986	1600	sp|Q8IZW8|TENS4_HUMAN	yes	yes	0	0	0	0	0	1	1		1		1				22.839	22.839	3	2.1145E-06	4729	20190902_JH_EV_Ubi_2	95.624	48.922	1950400	818960	272540	0	858850	0	0	0	0	0			5169	1600	4551	14503;14504;14505;14506	15245;15246;15247;15248	15246				4
TPHVLVLGSGVYR	Unmodified	1396.7827	0.78268401	701	sp|P27708|PYR1_HUMAN	yes	yes	0	0	0	0	0						1	1			32.824	32.824	3	9.3071E-05	8444	20190902_JH_MUT_Ubi_2	124.6	62.191	4626600	0	0	0	0	0	1920400	2706200	0	0			5170	701	4552	14507;14508	15249;15250	15249				2
TPHVQAVQGPLGSPPKR	GlyGly (K)	1882.0173	0.017328404	1332	sp|Q15149|PLEC_HUMAN	yes	yes	0	0	1	0	1		1	1	1		1	1	1	1	24.734	24.734	4	0.0080376	5290	20190902_JH_MUT_Ubi_3	61.265	37.809	24113000	0	1327500	4454600	1850100	0	2577700	2321400	6792200	4789100			5171	1332	4553	14509;14510;14511;14512;14513;14514;14515	15251;15252;15253;15254;15255;15256;15257	15254		1385		7
TPIAAGHPSMNLLLR	Oxidation (M)	1605.8661	0.86609606	901	sp|P50213-2|IDH3A_HUMAN;sp|P50213|IDH3A_HUMAN	yes	no	0	0	0	1	0			1							31.346	31.346	3	0.027694	6752	20190821_JH_WT_Ubi	52.5	22.192	4011700	0	0	4011700	0	0	0	0	0	0			5172	901	4554	14516	15258	15258			567	1
TPIGSFLGSLSLLPATK	Unmodified	1700.9713	0.97127264	673	sp|P24752-2|THIL_HUMAN;sp|P24752|THIL_HUMAN	yes	no	0	0	0	0	0									1	54.096	54.096	3	0.0005305	15594	20190902_JH_WT_Ubi_3	91.592	0.15143	418140	0	0	0	0	0	0	0	0	418140			5173	673	4555	14517	15259	15259				1
TPLHEIALSIK	Unmodified	1220.7129	0.71287311	1182	sp|Q08211|DHX9_HUMAN	yes	yes	0	0	0	0	0	1		1	1		1				33.378	33.378	3	5.2821E-09	7462	20190821_JH_WT_Ubi	128.88	73.816	10115000	742810	0	0	404900	0	8967000	0	0	0			5174	1182	4556	14518;14519;14520;14521	15260;15261;15262;15263	15263				4
TPLHVSIMAGNEYVFSQLLQCK	Oxidation (M)	2550.2611	0.26106543	2098	sp|Q9P2R3|ANFY1_HUMAN;sp|Q9P2R3-2|ANFY1_HUMAN;sp|Q9P2R3-4|ANFY1_HUMAN	yes	no	0	0	0	1	0		1								46.535	46.535	3	0.017202	12036	20190821_JH_MUT_Ubi	48.354	11.717	1565100	0	1565100	0	0	0	0	0	0	0			5175	2098	4557	14522	15264	15264			1116	1
TPLLDEEEEENPDKASK	GlyGly (K)	2056.9437	0.9436735	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN	yes	no	0	0	1	0	1	1		1		1	1	1			27.975	27.975	3	4.7431E-19	6235	20190902_JH_EV_Ubi_3	160.93	92.183	12017000	3031300	0	1970700	0	3032400	1952600	2029800	0	0			5176	668	4558	14523;14524;14525;14526;14527	15265;15266;15267;15268;15269;15270	15266		649;650		5
TPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGK	Unmodified	3571.7842	0.78416393	1235	sp|Q13409-6|DC1I2_HUMAN;sp|Q13409-3|DC1I2_HUMAN;sp|Q13409-7|DC1I2_HUMAN;sp|Q13409-2|DC1I2_HUMAN;sp|Q13409-5|DC1I2_HUMAN;sp|Q13409|DC1I2_HUMAN	yes	no	0	0	0	0	0		1	1							37.121	37.121	4	9.3681E-06	8595	20190821_JH_MUT_Ubi	72.728	4.4372	20603000	0	2168100	18435000	0	0	0	0	0	0			5177	1235	4559	14528;14529	15271;15272	15271				2
TPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGK	Unmodified	3571.7842	0.78416393	142	sp|O14576-4|DC1I1_HUMAN;sp|O14576-3|DC1I1_HUMAN;sp|O14576-5|DC1I1_HUMAN;sp|O14576-2|DC1I1_HUMAN;sp|O14576|DC1I1_HUMAN	yes	no	0	0	0	0	0									1	36.515	36.515	4	0.011438	10346	20190902_JH_WT_Ubi_3	36.006	0	4200600	0	0	0	0	0	0	0	0	4200600			5178	142	4560	14530	15273	15273				1
TPLVSVLLEGPPHSGK	Unmodified	1629.909	0.90900673	855	sp|P46459-2|NSF_HUMAN;sp|P46459|NSF_HUMAN	yes	no	0	0	0	0	0	1	1		1	1	1	1		1	40.022	40.022	3	1.3602E-19	10014	20190902_JH_EV_Ubi_2	168.93	138.9	34109000	7578000	4312500	0	4648700	3526700	5847000	4911500	0	3284400			5179	855	4561	14531;14532;14533;14534;14535;14536;14537	15274;15275;15276;15277;15278;15279;15280	15275				7
TPQGPPEIYSDTQFPSLQSTAK	Unmodified	2391.1594	0.15942035	2157	sp|Q9UKY7|CDV3_HUMAN;sp|Q9UKY7-2|CDV3_HUMAN;sp|Q9UKY7-3|CDV3_HUMAN	yes	no	0	0	0	0	0								1		42.643	42.643	3	0.00060207	12758	20190902_JH_WT_Ubi_2	73.448	19.444	3308300	0	0	0	0	0	0	0	3308300	0			5180	2157	4562	14538	15281	15281				1
TPQSIPYQDLPHLVNADGQYLFCR	Unmodified	2831.3701	0.37009861	1841	sp|Q99685|MGLL_HUMAN;sp|Q99685-2|MGLL_HUMAN	yes	no	0	0	0	0	0			1						1	47.396	47.396	3	0.0025492	12993	20190821_JH_WT_Ubi	60.347	30.507	11057000	0	0	6428600	0	0	0	0	0	4628300			5181	1841	4563	14539;14540	15282;15283	15282				2
TPSFGISAPQVSIPDVNVNLK	Unmodified	2182.1634	0.16338352	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0					1	2	1	1	1	49.131	49.131	2;3	2.2501E-95	12085	20190902_JH_EV_Ubi_3	241.39	176.21	13085000	0	0	0	0	2923300	3655900	1892500	1770700	2843000			5182	1190	4564	14541;14542;14543;14544;14545;14546	15284;15285;15286;15287;15288;15289	15284				4
TPSFGISAPQVSIPDVNVNLKGPK	GlyGly (K)	2578.3755	0.37550156	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			44.848	44.848	3	2.2391E-09	11601	20190821_JH_MUT_Ubi	111.4	90.16	13129000	2153200	5012300	0	0	0	3906600	2056500	0	0			5183	1190	4565	14547;14548;14549;14550	15290;15291;15292;15293	15291		1231;1232		4
TPTKPSSLNNQLVSVDCK	GlyGly (K)	2101.0474	0.047367483	2078	sp|Q9NZV1|CRIM1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	29.689	29.689	3	1.8547E-34	6782	20190902_JH_MUT_Ubi_3	193.3	145.66	228380000	38486000	26759000	7778500	37831000	23682000	36522000	31896000	9666100	15757000			5184	2078	4566	14551;14552;14553;14554;14555;14556;14557;14558;14559	15294;15295;15296;15297;15298;15299;15300;15301;15302;15303	15299		1959;1961		10
TPTKPSSLNNQLVSVDCK	GlyGly (K);Deamidation (NQ)	2102.0314	0.031383068	2078	sp|Q9NZV1|CRIM1_HUMAN	yes	yes	0	1	1	0	1	1	1			1	1				30.837	30.837	3	2.3146E-05	6893	20190821_JH_EV_Ubi	122.01	76.286	16512000	5414200	4076000	0	0	1365300	5656500	0	0	0			5185	2078	4566	14560;14561;14562;14563	15304;15305;15306;15307	15304	661;662;1282	1959;1961		4
TPTKPSSLNNQLVSVDCKK	2 GlyGly (K)	2343.1853	0.18525795	2078	sp|Q9NZV1|CRIM1_HUMAN	yes	yes	0	0	2	0	2					1					26.56	26.56	4	0.030602	5835	20190902_JH_EV_Ubi_3	61.102	28.801	1938200	0	0	0	0	1938200	0	0	0	0			5186	2078	4567	14564	15308	15308		1959;1960;1961		1
TPVEPEVAIHR	Unmodified	1246.667	0.66698555	1002	sp|P60866|RS20_HUMAN;sp|P60866-2|RS20_HUMAN	yes	no	0	0	0	0	0		1	1	1	1	1	1	1	1	26.761	26.761	3	0.0006102	5373	20190821_JH_WT_Ubi	121.36	84.169	28545000	0	1363600	3670500	2323700	1146600	3653800	2435000	8227500	5723900			5187	1002	4568	14565;14566;14567;14568;14569;14570;14571;14572	15309;15310;15311;15312;15313;15314;15315;15316	15314				8
TPVKEPNSENVDISSGGGVTGWK	GlyGly (K)	2471.1928	0.19284575	1009	sp|P61026|RAB10_HUMAN	yes	yes	0	0	1	0	1	1	1		1		1	1			32.698	32.698	3	0.00036846	7786	20190902_JH_MUT_Ubi_3	75.225	44.114	7500900	1311300	1510600	0	953590	0	2178800	1546700	0	0			5188	1009	4569	14573;14574;14575;14576;14577	15317;15318;15319;15320;15321	15321		998		5
TPVTQVNEVTGTLR	Unmodified	1513.81	0.81002097	1234	sp|Q13405|RM49_HUMAN	yes	yes	0	0	0	0	0		1								34.202	34.202	2	0.0092624	7423	20190821_JH_MUT_Ubi	75.739	31.422	417490	0	417490	0	0	0	0	0	0	0			5189	1234	4570	14578	15322	15322				1
TPYTIMFGPDK	Unmodified	1268.6111	0.61111015	704	sp|P27824-3|CALX_HUMAN;sp|P27824|CALX_HUMAN;sp|P27824-2|CALX_HUMAN	yes	no	0	0	0	0	0									1	39.992	39.992	2	0.027299	11477	20190902_JH_WT_Ubi_3	66.92	25.044	3525700	0	0	0	0	0	0	0	0	3525700			5190	704	4571	14579	15323	15323				0
TQAIVCQQLDLTHLK	Unmodified	1766.9349	0.93490391	1019	sp|P61221|ABCE1_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1					36.731	36.731	3	7.406E-05	8463	20190821_JH_MUT_Ubi	113.4	79.131	14343000	2359200	2616100	8278900	0	1088900	0	0	0	0			5191	1019	4572	14580;14581;14582;14583	15324;15325;15326;15327	15326				3
TQCALKQCCGTLPQAPSGK	GlyGly (K)	2218.0293	0.029291353	2261	sp|Q9Y6M5|ZNT1_HUMAN	yes	yes	0	0	1	0	1	1		1			1		1	1	26.787	26.787	3	2.6398E-18	5295	20190821_JH_EV_Ubi	155.94	111.99	12867000	4004200	0	2420000	0	0	2077400	0	2089500	2275400			5192	2261	4573	14584;14585;14586;14587;14588	15328;15329;15330;15331;15332	15328		2097		5
TQDGVALEIQPLNSQEGIDNEEKDK	GlyGly (K)	2883.3734	0.37338889	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN;sp|P23634-5|AT2B4_HUMAN;sp|P23634-4|AT2B4_HUMAN;sp|P23634-3|AT2B4_HUMAN;sp|P23634-2|AT2B4_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	37.525	37.525	3	1.1483E-63	9227	20190902_JH_EV_Ubi_2	200.19	151.87	27775000	2492700	3025700	8201500	1691500	0	2653700	2734300	3533600	3442300			5193	668	4574	14589;14590;14591;14592;14593;14594;14595;14596	15333;15334;15335;15336;15337;15338;15339;15340	15334		646;651		8
TQDGVALEIQPLNSQEGIDNEEKDKK	GlyGly (K)	3011.4684	0.4683519	668	sp|P23634-7|AT2B4_HUMAN;sp|P23634-6|AT2B4_HUMAN;sp|P23634-8|AT2B4_HUMAN;sp|P23634|AT2B4_HUMAN;sp|P23634-5|AT2B4_HUMAN;sp|P23634-4|AT2B4_HUMAN;sp|P23634-3|AT2B4_HUMAN;sp|P23634-2|AT2B4_HUMAN	yes	no	0	0	1	0	2	1	1				1	1			34.082	34.082	4	0.0040683	8766	20190902_JH_MUT_Ubi_2	52.019	34.709	16476000	5284500	2840100	0	0	0	4940900	3410600	0	0			5194	668	4575	14597;14598;14599;14600	15341;15342;15343;15344	15343		646;651;652		4
TQEAIIQIMKMR	2 Oxidation (M);GlyGly (K)	1606.8171	0.81709696	1740	sp|Q93034|CUL5_HUMAN	yes	yes	0	0	1	2	1	1	1	1	1	1	1	1	1	1	27.51	27.51	3	7.676E-06	7176	20190902_JH_WT_Ubi_3	139.32	101.09	110260000	1652400	5348900	19499000	1172200	4199500	24195000	12691000	21578000	19922000			5195	1740	4576	14601;14602;14603;14604;14605;14606;14607;14608;14609	15345;15346;15347;15348;15349;15350;15351;15352;15353	15353		1732	988;989	9
TQEAIIQIMKMR	Oxidation (M);GlyGly (K)	1590.8222	0.82218234	1740	sp|Q93034|CUL5_HUMAN	yes	yes	0	0	1	1	1		2	2			1	1	2	2	32.772	32.772	3	0.0006119	7563	20190821_JH_WT_Ubi	120.55	81.545	67182000	0	5764400	15363000	0	0	6739800	5353800	17641000	16320000			5196	1740	4576	14610;14611;14612;14613;14614;14615;14616;14617;14618;14619	15354;15355;15356;15357;15358;15359;15360;15361;15362;15363	15359		1732	988;989	10
TQEAIIQIMKMR	GlyGly (K)	1574.8273	0.82726771	1740	sp|Q93034|CUL5_HUMAN	yes	yes	0	0	1	0	1			1			1		1	1	37.18	37.18	3	3.4783E-06	11003	20190902_JH_WT_Ubi_2	145.14	93.411	29429000	0	0	11845000	0	0	5116800	0	4242700	8224300			5197	1740	4576	14620;14621;14622;14623	15364;15365;15366;15367	15366		1732		4
TQEQLALEMAELTAR	Unmodified	1702.856	0.85598488	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	45.755	45.755	2;3	2.0224E-06	13345	20190902_JH_WT_Ubi_3	131.4	83.684	3805100	0	0	2436000	0	0	0	0	1369100	0			5198	686	4577	14624;14625;14626;14627	15368;15369;15370;15371	15371				4
TQETLSQAGQKTSAALSTVGSAISR	GlyGly (K)	2605.3307	0.33073621	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN;sp|O43399-6|TPD54_HUMAN	yes	no	0	0	1	0	1			1			1				37.736	37.736	3	0.0065031	9065	20190821_JH_WT_Ubi	59.789	31.586	3290900	0	0	2587100	0	0	703840	0	0	0			5199	202	4578	14628;14629	15372;15373	15373		184		1
TQHGVLSQQFVELINK	Unmodified	1839.9843	0.98429694	1198	sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN	yes	no	0	0	0	0	0	1	1	1				1			39.071	39.071	3	0.0014482	9852	20190821_JH_EV_Ubi	84.62	24.13	10295000	2035100	1613600	5492600	0	0	0	1153400	0	0			5200	1198	4579	14630;14631;14632;14633	15374;15375;15376;15377	15374				4
TQIAPGSQTVLGIGPGPADLIDK	Unmodified	2247.2111	0.21106199	2223	sp|Q9Y3E5|PTH2_HUMAN	yes	yes	0	0	0	0	0			1	1			1	1	1	47.188	47.188	3	4.6124E-09	13818	20190902_JH_WT_Ubi_3	117.01	79.972	6124700	0	0	3194900	545340	0	0	0	1218900	1165500			5201	2223	4580	14634;14635;14636;14637;14638	15378;15379;15380;15381;15382	15382				5
TQLASWSDPTEETGPVAGILDTETLEK	Unmodified	2887.3975	0.39747837	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	51.063	51.063	3	4.8378E-77	14355	20190821_JH_WT_Ubi	215.6	188.05	19331000	0	1744500	7917000	0	0	915180	683490	3793000	4278300			5202	1332	4581	14639;14640;14641;14642;14643;14644	15383;15384;15385;15386;15387;15388	15386				6
TQLGAIYIDASCLTWEGQQFQGK	Unmodified	2613.2533	0.25333751	1032	sp|P61970|NTF2_HUMAN	yes	yes	0	0	0	0	0								1		51.132	51.132	3	0.025183	15273	20190902_JH_WT_Ubi_2	39.935	18.07	1777300	0	0	0	0	0	0	0	1777300	0			5203	1032	4582	14645	15389	15389				1
TQNDVLHAENVK	Unmodified	1366.6841	0.68409218	773	sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN;sp|P35241-4|RADI_HUMAN;sp|P35241-2|RADI_HUMAN	yes	no	0	0	0	0	0									1	22.599	22.599	3	0.01867	5768	20190902_JH_WT_Ubi_3	64.945	27.436	4674600	0	0	0	0	0	0	0	0	4674600			5204	773	4583	14646	15390	15390				1
TQNDVLHAENVKAGR	GlyGly (K)	1764.8867	0.88670816	773	sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN;sp|P35241-4|RADI_HUMAN;sp|P35241-2|RADI_HUMAN	yes	no	0	0	1	0	1	1									22.163	22.163	4	0.0099896	3895	20190821_JH_EV_Ubi	69.261	30.266	1529200	1529200	0	0	0	0	0	0	0	0			5205	773	4584	14647	15391	15391		759		0
TQNLAALLHAIAR	Unmodified	1390.8045	0.80448208	1478	sp|Q6P179-3|ERAP2_HUMAN;sp|Q6P179|ERAP2_HUMAN	yes	no	0	0	0	0	0			1							42.737	42.737	3	0.032292	11085	20190821_JH_WT_Ubi	50.467	4.8144	1080500	0	0	1080500	0	0	0	0	0	0			5206	1478	4585	14648	15392	15392				1
TQQAAQANITLQEQIEAIHK	Unmodified	2234.1655	0.16550878	1352	sp|Q15459-2|SF3A1_HUMAN;sp|Q15459|SF3A1_HUMAN	yes	no	0	0	0	0	0		1								35.903	35.903	3	0.025874	8090	20190821_JH_MUT_Ubi	43.115	19.786	1102400	0	1102400	0	0	0	0	0	0	0			5207	1352	4586	14649	15393	15393				1
TQSGLQSYLLQFHGLVR	Unmodified	1946.0374	0.037395144	2179	sp|Q9UNN8|EPCR_HUMAN	yes	yes	0	0	0	0	0	1				1				1	44.816	44.816	3	0.0015701	12113	20190821_JH_EV_Ubi	79.346	56.472	9798000	3905000	0	0	0	1657900	0	0	0	4235100			5208	2179	4587	14650;14651;14652	15394;15395;15396	15394				3
TQSSASLAASYAAQQHPQAAASYR	Unmodified	2464.1731	0.17311336	1806	sp|Q96PK6|RBM14_HUMAN	yes	yes	0	0	0	0	0		1	1		1		1	1	1	29.782	29.782	3	1.1176E-12	8371	20190902_JH_WT_Ubi_2	129.75	101.28	24316000	0	1533200	4955700	0	522470	0	2125800	7874400	7304200			5209	1806	4588	14653;14654;14655;14656;14657;14658	15397;15398;15399;15400;15401;15402	15401				5
TQSSSCEDLPSTTQPKGR	GlyGly (K)	2091.9491	0.94911	161	sp|O14936-5|CSKP_HUMAN;sp|O14936-3|CSKP_HUMAN;sp|O14936-4|CSKP_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1		22.18	22.18	3	3.0015E-20	4158	20190821_JH_WT_Ubi	166.36	122.76	28281000	2234500	1119400	5883800	2135700	2211600	2044200	3290300	9361500	0			5210	161	4589	14659;14660;14661;14662;14663;14664;14665;14666	15403;15404;15405;15406;15407;15408;15409;15410	15409		136		8
TQTAIASEDMPNTLTEAEK	Oxidation (M)	2064.9521	0.95212969	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	0	0	1	0	1									31.02	31.02	2	0.0010613	6789	20190821_JH_EV_Ubi	88.311	48.887	2040400	2040400	0	0	0	0	0	0	0	0			5211	1129;1130	4590	14667	15411	15411			703	1
TQTVCNFTDGALVQHQEWDGK	Unmodified	2433.1019	0.10192225	96	sp|A8MUU1|FB5L3_HUMAN;sp|Q01469|FABP5_HUMAN	yes	no	0	0	0	0	0		1	1			1				36.629	36.629	3	0.00066806	9814	20190902_JH_MUT_Ubi_2	73.76	50.198	48571000	0	9642000	33178000	0	0	5750700	0	0	0			5212	96	4591	14668;14669;14670	15412;15413;15414;15415	15414				4
TREEECHFYAGGQVYPGEASR	Unmodified	2442.0659	0.065871094	1220	sp|Q13162|PRDX4_HUMAN	yes	yes	0	0	0	0	1			1							28.089	28.089	4	0.03391	5716	20190821_JH_WT_Ubi	43.696	19.229	7065600	0	0	7065600	0	0	0	0	0	0			5213	1220	4592	14671	15416	15416				1
TRPSSDQLKEASGTDVK	GlyGly (K)	1931.9548	0.95484731	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	0	1	0	2	1	1	1	2	1	1	1	1	1	21.056	21.056	3;4	7.5216E-10	5288	20190902_JH_WT_Ubi_3	145.79	101.35	255000000	30698000	9314800	19177000	38900000	51927000	20003000	21888000	36693000	26402000			5214	1603	4593	14672;14673;14674;14675;14676;14677;14678;14679;14680;14681	15417;15418;15419;15420;15421;15422;15423;15424;15425;15426	15426		1600;1604		10
TRPSSDQLKEASGTDVK	GlyGly (K);Deamidation (NQ)	1932.9389	0.93886289	1603	sp|Q8N0X7|SPART_HUMAN	yes	yes	0	1	1	0	2					1					21.956	21.956	3	0.026348	4609	20190902_JH_EV_Ubi_3	72.428	38.151	1407400	0	0	0	0	1407400	0	0	0	0			5215	1603	4593	14682	15427	15427	1130	1600;1604		1
TSAEAPSHHLQQQQQQQR	Unmodified	2101.0049	0.0049258171	1715	sp|Q92609|TBCD5_HUMAN;sp|Q92609-2|TBCD5_HUMAN	yes	no	0	0	0	0	0			1							16.427	16.427	3	0.0022142	2986	20190821_JH_WT_Ubi	72.662	42.126	308980	0	0	308980	0	0	0	0	0	0			5216	1715	4594	14683	15428	15428				1
TSATVGPKAPSGGK	GlyGly (K)	1370.7154	0.7153923	581	sp|P16104|H2AX_HUMAN	yes	yes	0	0	1	0	1	1					1	1	1	1	17.419	17.419	3	4.1152E-06	3826	20190902_JH_MUT_Ubi_2	133.98	84.51	15961000	886750	0	0	0	0	2490800	3887600	4676000	4019600			5217	581	4595	14684;14685;14686;14687;14688	15429;15430;15431;15432;15433	15430		574		5
TSFIQYLLEQEVPGSR	Unmodified	1865.9523	0.95232811	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	0	0	0			1			1		1	1	54.17	54.17	3	0.00060603	15472	20190821_JH_WT_Ubi	95.073	47.159	6212100	0	0	2278400	0	0	293290	0	2073100	1567300			5218	2074	4596	14689;14690;14691;14692	15434;15435;15436;15437	15435				4
TSGHDHPDVATMLNILALVYR	Oxidation (M)	2338.174	0.17396498	1179	sp|Q9H0B6-2|KLC2_HUMAN;sp|Q07866-8|KLC1_HUMAN;sp|Q07866-2|KLC1_HUMAN;sp|Q07866-3|KLC1_HUMAN;sp|Q07866|KLC1_HUMAN;sp|Q07866-7|KLC1_HUMAN;sp|Q07866-5|KLC1_HUMAN;sp|Q07866-10|KLC1_HUMAN;sp|Q9H0B6|KLC2_HUMAN;sp|Q07866-6|KLC1_HUMAN;sp|Q07866-4|KLC1_HUMAN;sp|Q07866-9|KLC1_HUMAN	yes	no	0	0	0	1	0		1	1			1	2	1	1	45.957	45.957	3;4	4.7896E-07	13428	20190902_JH_WT_Ubi_3	107.69	81.329	38556000	0	3085400	15365000	0	0	4038400	4062800	9685400	2318600			5219	1179	4597	14693;14694;14695;14696;14697;14698;14699	15438;15439;15440;15441;15442;15443;15444	15444			735	7
TSGHDHPDVATMLNILALVYR	Unmodified	2322.1791	0.17905036	1179	sp|Q9H0B6-2|KLC2_HUMAN;sp|Q07866-8|KLC1_HUMAN;sp|Q07866-2|KLC1_HUMAN;sp|Q07866-3|KLC1_HUMAN;sp|Q07866|KLC1_HUMAN;sp|Q07866-7|KLC1_HUMAN;sp|Q07866-5|KLC1_HUMAN;sp|Q07866-10|KLC1_HUMAN;sp|Q9H0B6|KLC2_HUMAN;sp|Q07866-6|KLC1_HUMAN;sp|Q07866-4|KLC1_HUMAN;sp|Q07866-9|KLC1_HUMAN	yes	no	0	0	0	0	0		1	1			1		1		53.308	53.308	4	0.0031688	15905	20190902_JH_WT_Ubi_2	61.52	37.065	15335000	0	2529100	6833000	0	0	326970	0	5645500	0			5220	1179	4597	14700;14701;14702;14703	15445;15446;15447;15448;15449	15449				5
TSGLQQKNVEVK	GlyGly (K)	1443.7682	0.76815616	2109	sp|Q9UBU8|MO4L1_HUMAN;sp|Q9UBU8-2|MO4L1_HUMAN;sp|Q9UBU8-3|MO4L1_HUMAN	yes	no	0	0	1	0	1		1	1			1		1		20.591	20.591	2;3	0.0040277	5235	20190902_JH_WT_Ubi_2	97.957	55.532	11205000	0	1062800	2044700	0	0	771740	0	7325700	0			5221	2109	4598	14704;14705;14706;14707	15450;15451;15452;15453	15453		1984		3
TSGTLISFIYPAQNPELLNK	Unmodified	2205.1681	0.16813455	1236	sp|Q13423|NNTM_HUMAN	yes	yes	0	0	0	0	0			1	1		1	1	1	1	50.323	50.323	3	3.7231E-10	14392	20190902_JH_MUT_Ubi_2	133.78	97.437	6447500	0	0	2388500	509780	0	785440	627640	0	2136200			5222	1236	4599	14708;14709;14710;14711;14712;14713	15454;15455;15456;15457;15458;15459;15460	15455				7
TSICFQYEVSAVHNLQPTQPSLIR	Unmodified	2787.4014	0.40139873	2063	sp|Q9NYK5|RM39_HUMAN;sp|Q9NYK5-2|RM39_HUMAN	yes	no	0	0	0	0	0		1								43.734	43.734	3	0.0056802	10984	20190821_JH_MUT_Ubi	52.522	23.773	998400	0	998400	0	0	0	0	0	0	0			5223	2063	4600	14714	15461;15462	15461				2
TSIDAYDNFDNISLAQR	Unmodified	1941.9068	0.90683448	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0									1	43.212	43.212	2	0.019771	12584	20190902_JH_WT_Ubi_3	58.04	19.081	3242200	0	0	0	0	0	0	0	0	3242200			5224	1123	4601	14715	15463	15463				1
TSIEDQDELSSLLQVPLVAGTVNR	Unmodified	2583.3392	0.33917563	988	sp|P56537|IF6_HUMAN;sp|P56537-2|IF6_HUMAN	yes	no	0	0	0	0	0	1		1	1	1	1	1	1	1	54.796	54.796	3	1.3276E-37	14585	20190821_JH_EV_Ubi	173.18	120.47	23236000	2217100	0	10858000	503150	0	1117600	869650	2994900	4675600			5225	988	4602	14716;14717;14718;14719;14720;14721;14722;14723	15464;15465;15466;15467;15468;15469;15470;15471;15472	15464				9
TSKSQGGVQPIPSQGGK	GlyGly (K)	1768.9068	0.9067749	2070	sp|Q9NZB2|F120A_HUMAN;sp|Q9NZB2-6|F120A_HUMAN	yes	no	0	0	1	0	1							1			19.664	19.664	3	0.02276	4214	20190902_JH_MUT_Ubi_3	61.165	28.233	0	0	0	0	0	0	0	0	0	0			5226	2070	4603	14724	15473	15473		1951		1
TSKTHTDTESEASILGDSGEYK	GlyGly (K)	2469.1143	0.11432065	2223	sp|Q9Y3E5|PTH2_HUMAN	yes	yes	0	0	1	0	1					1	1				26.704	26.704	3;4	9.1354E-07	5864	20190902_JH_EV_Ubi_3	102.24	62.856	5981600	0	0	0	0	1617400	4364200	0	0	0			5227	2223	4604	14725;14726	15474;15475	15474		2069		2
TSLVSTIAGILSTVTTSSSGTNPSSSASTTAMPVTQSVK	Oxidation (M)	3771.8936	0.89355877	1274	sp|Q14119|VEZF1_HUMAN	yes	yes	0	0	0	1	0						1				55.646	55.646	3	6.9334E-05	15265	20190902_JH_MUT_Ubi_2	55.801	31.818	1021900	0	0	0	0	0	1021900	0	0	0			5228	1274	4605	14727	15476	15476			791	1
TSNNSQVNKLTLTSDESTLIEDGGAR	GlyGly (K)	2863.3795	0.3795369	2020	sp|Q9NRX5|SERC1_HUMAN	yes	yes	0	0	1	0	1						1				36.239	36.239	3	0.0050066	9755	20190902_JH_MUT_Ubi_2	52.773	24.268	1046000	0	0	0	0	0	1046000	0	0	0			5229	2020	4606	14728	15477	15477		1926		1
TSPQQKLIIVEGCQR	GlyGly (K)	1869.9731	0.97308033	418;961	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P13637|AT1A3_HUMAN;sp|P13637-2|AT1A3_HUMAN;sp|P13637-3|AT1A3_HUMAN;sp|P50993|AT1A2_HUMAN;sp|Q13733|AT1A4_HUMAN;sp|P54707|AT12A_HUMAN;sp|P54707-2|AT12A_HUMAN	no	no	0	0	1	0	1		1								30.394	30.394	3	0.0036063	6081	20190821_JH_MUT_Ubi	82.55	9.0835	996860	0	996860	0	0	0	0	0	0	0			5230	418;961	4607	14729	15478	15478		400		1
TSPSSDKVQKDK	2 GlyGly (K)	1546.7587	0.75871368	800	sp|P38435|VKGC_HUMAN	yes	yes	0	0	2	0	2				1						10.584	10.584	2	0.021431	2303	20190902_JH_EV_Ubi_2	61.233	26.478	372430	0	0	0	372430	0	0	0	0	0			5231	800	4608	14730	15479	15479		779;781;782		0
TSQETADVKASVLLGSR	GlyGly (K)	1874.9698	0.96976909	1606	sp|Q8N1F7|NUP93_HUMAN	yes	yes	0	0	1	0	1						1				32.25	32.25	3	0.022195	8143	20190902_JH_MUT_Ubi_2	53.861	25.892	2148300	0	0	0	0	0	2148300	0	0	0			5232	1606	4609	14731	15480	15480		1606		1
TSRPENAIIYNNNEDFQVGQAK	Unmodified	2507.2041	0.20407913	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	0	0	0	1	1	1		1	1	1	1	1	1	32.895	32.895	3	1.7106E-28	9047	20190902_JH_WT_Ubi_3	161.08	78.727	79643000	8576400	6494400	0	7428300	5512300	7523800	6233900	22431000	15442000			5233	715	4610	14732;14733;14734;14735;14736;14737;14738;14739	15481;15482;15483;15484;15485;15486;15487;15488	15488				8
TSRPENAIIYNNNEDFQVGQAK	Deamidation (NQ)	2508.1881	0.18809472	715	sp|P29401|TKT_HUMAN;sp|P29401-2|TKT_HUMAN	yes	no	0	1	0	0	1			1	1		1	1	1	2	33.501	33.501	3	4.385E-08	8053	20190902_JH_MUT_Ubi_3	117.29	58.464	15493000	0	0	3066800	942680	0	1455700	621550	2971100	6435200			5234	715	4610	14740;14741;14742;14743;14744;14745;14746	15489;15490;15491;15492;15493;15494;15495	15491	250;251;883			7
TSSAETPTIPLGSAVEAIK	Unmodified	1870.9888	0.9887732	1395	sp|Q16891-2|MIC60_HUMAN;sp|Q16891|MIC60_HUMAN;sp|Q16891-3|MIC60_HUMAN;sp|Q16891-4|MIC60_HUMAN	yes	no	0	0	0	0	0				1						42.669	42.669	2	0.011755	10799	20190902_JH_EV_Ubi_2	59.898	0.35627	1164500	0	0	0	1164500	0	0	0	0	0			5235	1395	4611	14747	15496	15496				1
TSSAFVGKTPEASPEPK	GlyGly (K)	1845.9109	0.91085723	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	1	0	1	1			1	1	1	1			25.406	25.406	3	0.00015279	5791	20190902_JH_MUT_Ubi_2	106.19	70.865	93411000	13182000	0	0	17033000	22209000	22671000	18316000	0	0			5236	1833	4612	14748;14749;14750;14751;14752	15497;15498;15499;15500;15501	15500		1793		5
TSSAQVEGGVHSLHSYEK	Unmodified	1914.9072	0.90716883	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	0	0	0					1	1	1			23.004	23.004	3	0.0012018	5116	20190902_JH_MUT_Ubi_2	76.341	47.796	7890600	0	0	0	0	2646700	2945100	2298800	0	0			5237	533	4613	14753;14754;14755	15502;15503;15504	15503				3
TSSGLGGSTTDFLEEWK	Unmodified	1813.837	0.83702358	1785	sp|Q96IZ0|PAWR_HUMAN	yes	yes	0	0	0	0	0			1							45.57	45.57	2	0.0051904	12241	20190821_JH_WT_Ubi	72.681	32.527	3028600	0	0	3028600	0	0	0	0	0	0			5238	1785	4614	14756	15505	15505				1
TSSISGPLSPAYTGQVPYNYNQLEGR	Unmodified	2798.3511	0.3511373	1130	sp|Q01082-3|SPTB2_HUMAN	yes	yes	0	0	0	0	0	1			1	1		1	1		43.652	43.652	3	1.585E-07	11049	20190902_JH_EV_Ubi_2	97.662	50.959	8665900	1829800	0	0	880690	445650	0	3457500	2052300	0			5239	1130	4615	14757;14758;14759;14760;14761	15506;15507;15508;15509;15510;15511	15507				6
TSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPR	GlyGly (K)	3881.7886	0.788636	1250	sp|Q13530-2|SERC3_HUMAN;sp|Q13530|SERC3_HUMAN	yes	no	0	0	1	0	1					1	1	1		1	39.146	39.146	3	8.4721E-08	10855	20190902_JH_MUT_Ubi_2	80.473	49.759	6518600	0	0	0	0	851590	1442000	2369000	0	1856000			5240	1250	4616	14762;14763;14764;14765	15512;15513;15514;15515	15513		1319		4
TSVQFQNFSPTVVHPGDLQTQLAVQTK	Unmodified	2969.5247	0.52468499	357	sp|O95782-2|AP2A1_HUMAN;sp|O95782|AP2A1_HUMAN	yes	no	0	0	0	0	0		1	1							43.363	43.363	3	0.00053943	10867	20190821_JH_MUT_Ubi	64.257	44.497	12804000	0	3157200	9646400	0	0	0	0	0	0			5241	357	4617	14766;14767	15516;15517	15516				2
TTDLSIQPPSADLK	Unmodified	1484.7722	0.77223848	1573	sp|Q8IVF2|AHNK2_HUMAN;sp|Q8IVF2-3|AHNK2_HUMAN	yes	no	0	0	0	0	0									1	36.976	36.976	2	0.00062181	10481	20190902_JH_WT_Ubi_3	113.38	27.846	0	0	0	0	0	0	0	0	0	0			5242	1573	4618	14768	15518	15518				1
TTEKTPSLTR	GlyGly (K)	1246.6517	0.65172941	1114	sp|P98170|XIAP_HUMAN	yes	yes	0	0	1	0	1		1								19.878	19.878	3	0.023208	3056	20190821_JH_MUT_Ubi	72.096	26.187	431850	0	431850	0	0	0	0	0	0	0			5243	1114	4619	14769	15519	15519		1109		1
TTEMETIYDLGTK	Oxidation (M)	1516.6967	0.69669028	2197	sp|Q9Y230-2|RUVB2_HUMAN;sp|Q9Y230|RUVB2_HUMAN	yes	no	0	0	0	1	0					1					34.116	34.116	2	0.023787	8312	20190902_JH_EV_Ubi_3	58.274	38.959	715960	0	0	0	0	715960	0	0	0	0			5244	2197	4620	14770	15520	15520			1140	0
TTETGPDSEVKK	GlyGly (K)	1404.6733	0.67325272	1953	sp|Q9H4G0|E41L1_HUMAN	yes	yes	0	0	1	0	1						1				16.446	16.446	3	0.028987	3698	20190902_JH_MUT_Ubi_2	67.214	11.128	726210	0	0	0	0	0	726210	0	0	0			5245	1953	4621	14771	15521	15521		1887		1
TTGASFEKAQQEFATGVMSNK	Oxidation (M);GlyGly (K)	2361.0907	0.090688861	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	0	1	1	1	1					1		1	1	32.594	32.594	3	2.2162E-08	7453	20190821_JH_EV_Ubi	117.03	79.734	6866300	1430100	0	0	0	0	1266600	0	2216900	1952800			5246	173	4622	14772;14773;14774;14775	15522;15523;15524;15525	15522		144;149	72	4
TTGFGMIYDSLDYAKK	GlyGly (K)	1922.9084	0.90841439	1063	sp|P62847-2|RS24_HUMAN;sp|P62847-3|RS24_HUMAN;sp|P62847|RS24_HUMAN;sp|P62847-4|RS24_HUMAN	yes	no	0	0	1	0	1		1	1							41.218	41.218	3	0.003703	10036	20190821_JH_MUT_Ubi	79.771	50.758	4781400	0	1230200	3551100	0	0	0	0	0	0			5247	1063	4623	14776;14777	15526;15527;15528	15526		1040;1041		2
TTGIPIHVFGTETHMTAIVGMALGHR	Unmodified	2746.4047	0.40470997	946	sp|P53396|ACLY_HUMAN;sp|P53396-2|ACLY_HUMAN;sp|P53396-3|ACLY_HUMAN	yes	no	0	0	0	0	0			1							44.181	44.181	4	0.034351	11692	20190821_JH_WT_Ubi	28.748	13.804	5135200	0	0	5135200	0	0	0	0	0	0			5248	946	4624	14778	15529	15529				1
TTGIVETHFTFKDLYFK	GlyGly (K)	2160.0892	0.089155943	478	sp|P08754|GNAI3_HUMAN	yes	yes	0	0	1	0	1		1								41.155	41.155	3	0.0088871	9956	20190821_JH_MUT_Ubi	65.374	39.866	2088200	0	2088200	0	0	0	0	0	0	0			5249	478	4625	14779	15530	15530		480		1
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	Oxidation (M)	3198.6019	0.60194904	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	1	0	1	1	2	1	1	1	1	1	1	42.841	42.841	3;4	4.6277E-11	11172	20190902_JH_MUT_Ubi_3	103.74	74.146	922440000	12471000	39378000	308120000	5518500	7012400	51953000	40800000	197900000	259290000			5250	1000;1087	4626	14780;14781;14782;14783;14784;14785;14786;14787;14788;14789	15531;15532;15533;15534;15535;15536;15537;15538;15539;15540	15536			624	10
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	Unmodified	3182.607	0.60703441	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	0	0	1	1	1	1		2	1	1	1	44.486	44.486	3;4	3.419E-21	12776	20190902_JH_MUT_Ubi_2	128.33	103.5	576540000	4595300	42783000	303530000	1460600	0	20390000	23421000	79940000	100420000			5251	1000;1087	4626	14790;14791;14792;14793;14794;14795;14796;14797;14798	15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552	15547				12
TTGLVGLAVCNTPHER	Unmodified	1723.8676	0.86755262	1384	sp|Q16718|NDUA5_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1	1	1	1	1	32.062	32.062	3	9.3223E-06	7566	20190902_JH_EV_Ubi_3	119.96	67.072	90379000	10349000	0	18455000	10219000	6699500	3614000	3314000	19282000	18447000			5252	1384	4627	14799;14800;14801;14802;14803;14804;14805;14806	15553;15554;15555;15556;15557;15558;15559;15560	15555				8
TTHFVEGGDAGNR	Unmodified	1359.6167	0.61674089	609	sp|P18124|RL7_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1		1	19.174	19.174	3	0.0003148	4032	20190902_JH_MUT_Ubi_3	114.87	43.254	30749000	1611700	1595200	4947500	3126700	0	1800900	2434600	0	15232000			5253	609	4628	14807;14808;14809;14810;14811;14812;14813	15561;15562;15563;15564;15565;15566;15567	15565				7
TTHFVEGGDAGNREDQINR	Unmodified	2114.973	0.97295699	609	sp|P18124|RL7_HUMAN	yes	yes	0	0	0	0	1	1	1					1	1	1	22.335	22.335	3;4	0.0022813	5830	20190902_JH_WT_Ubi_2	84.41	54.276	41879000	4255700	2466600	0	0	0	0	1784900	7431100	25940000			5254	609	4629	14814;14815;14816;14817;14818	15568;15569;15570;15571;15572	15571				5
TTHTGQVLGSLVHVK	Unmodified	1575.8733	0.87328993	137	sp|O00748-2|EST2_HUMAN;sp|O00748|EST2_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1		28.285	28.285	3;4	8.0352E-12	5817	20190821_JH_WT_Ubi	157.37	118.41	23144000	0	2385000	7512500	0	0	4769000	3277900	5199800	0			5255	137	4630	14819;14820;14821;14822;14823;14824	15573;15574;15575;15576;15577;15578	15577				6
TTHVVNLGSNQYLFSVIVDPK	Unmodified	2330.227	0.22704641	1815	sp|Q96RS6-3|NUDC1_HUMAN;sp|Q96RS6-2|NUDC1_HUMAN;sp|Q96RS6|NUDC1_HUMAN	yes	no	0	0	0	0	0		1	1							45.872	45.872	3	1.5024E-08	12317	20190821_JH_WT_Ubi	115.88	76.031	8695900	0	1344200	7351700	0	0	0	0	0	0			5256	1815	4631	14825;14826	15579;15580	15580				2
TTHYTPLACGSNPLK	Unmodified	1658.8086	0.80864076	262	sp|O60832-2|DKC1_HUMAN;sp|O60832|DKC1_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1		1	1	28.534	28.534	3	0.0034528	7527	20190902_JH_WT_Ubi_3	78.401	37.184	18860000	1527000	1291800	5843500	0	1603700	2362100	0	0	6231500			5257	262	4632	14827;14828;14829;14830;14831;14832;14833	15581;15582;15583;15584;15585;15586;15587	15587				7
TTIPEEEEEEEEAAGVVVEEELFHQQGTPR	Unmodified	3410.5638	0.56376843	631	sp|P20700|LMNB1_HUMAN	yes	yes	0	0	0	0	0								1		49.496	49.496	3	0.018672	14846	20190902_JH_WT_Ubi_2	36.316	14.391	1060700	0	0	0	0	0	0	0	1060700	0			5258	631	4633	14834	15588	15588				1
TTITTTTTSSSGLGSPMIVGSPR	Oxidation (M)	2267.1315	0.13149104	1821	sp|Q96S97|MYADM_HUMAN	yes	yes	0	0	0	1	0	1		1	1	1			1	1	35.643	35.643	3	9.4852E-09	9968	20190902_JH_WT_Ubi_3	112.82	82.335	46131000	2632500	0	6376400	3709700	4457900	0	0	13003000	15951000			5259	1821	4634	14835;14836;14837;14838;14839;14840	15589;15590;15591;15592;15593;15594	15594			1008	6
TTLPQDCSNPAPLSSPLNGVHDR	Deamidation (NQ)	2476.1653	0.16525079	585	sp|P16278-2|BGAL_HUMAN;sp|P16278-3|BGAL_HUMAN;sp|P16278|BGAL_HUMAN	yes	no	0	1	0	0	0								1		35.941	35.941	3	0.029133	10476	20190902_JH_WT_Ubi_2	48.641	23.483	3505000	0	0	0	0	0	0	0	3505000	0			5260	585	4635	14841	15595	15595	217			1
TTLSIQVLTAQQLPK	Unmodified	1639.9509	0.95087155	1612	sp|Q8N3E9|PLCD3_HUMAN	yes	yes	0	0	0	0	0		2								44.138	44.138	2;3	0.020634	11153	20190821_JH_MUT_Ubi	54.402	32.736	4376300	0	4376300	0	0	0	0	0	0	0			5261	1612	4636	14842;14843	15596;15597	15596				1
TTNAGPLHPYWPQHLR	Acetyl (Protein N-term)	1928.9646	0.96456455	1330	sp|Q15125|EBP_HUMAN	yes	yes	1	0	0	0	0	1	1	1	1	1			1	1	37.348	37.348	3	1.5115E-05	9260	20190821_JH_EV_Ubi	115.83	80.299	74035000	19259000	3023000	21532000	7177200	9242900	0	0	7899000	5902700			5262	1330	4637	14844;14845;14846;14847;14848;14849;14850	15598;15599;15600;15601;15602;15603;15604	15598				7
TTPSATSLPQTVVMTSPVTLTSQTTK	Oxidation (M)	2692.3841	0.38407691	615	sp|P18846-2|ATF1_HUMAN;sp|P18846|ATF1_HUMAN	yes	no	0	0	0	1	0				2						41.876	41.876	3	0.012973	10574	20190902_JH_EV_Ubi_2	57.152	28.95	0	0	0	0	0	0	0	0	0	0			5263	615	4638	14851;14852	15605;15606	15605			379	2
TTQSGQMSGEGKAGPPGGSSR	Oxidation (M);GlyGly (K)	2105.9396	0.93960795	1381	sp|Q16630|CPSF6_HUMAN;sp|Q16630-2|CPSF6_HUMAN	yes	no	0	0	1	1	1	1	1		1	1	1	1			16.594	16.594	3	4.158E-08	3516	20190902_JH_MUT_Ubi_3	111.63	64.702	7855400	1200800	1125300	0	920220	2679200	1209400	720380	0	0			5264	1381	4639	14853;14854;14855;14856;14857;14858	15607;15608;15609;15610;15611;15612	15612		1420	857	6
TTQSGQMSGEGKAGPPGGSSR	GlyGly (K)	2089.9447	0.94469333	1381	sp|Q16630|CPSF6_HUMAN;sp|Q16630-2|CPSF6_HUMAN	yes	no	0	0	1	0	1							1			18.881	18.881	3	0.035235	4036	20190902_JH_MUT_Ubi_3	48.372	28.202	0	0	0	0	0	0	0	0	0	0			5265	1381	4639	14859	15613	15613		1420		1
TTQTLWPDVR	Unmodified	1215.6248	0.62478638	52		yes	yes	0	0	0	0	0		2				1	1			19.727	19.727	3	0.00094442	3090	20190821_JH_MUT_Ubi	125.75	33.88	26987000	0	8095400	0	0	0	8953200	9938700	0	0	+		5266	52	4640	14860;14861;14862;14863	15614;15615;15616;15617	15614				3
TTSCQHLVQYLATIAGISGNK	Unmodified	2261.1474	0.14741588	1716	sp|Q92614-5|MY18A_HUMAN;sp|Q92614-2|MY18A_HUMAN;sp|Q92614-3|MY18A_HUMAN;sp|Q92614-4|MY18A_HUMAN;sp|Q92614|MY18A_HUMAN	yes	no	0	0	0	0	0		1	1		1	1	1			47.158	47.158	3	1.1596E-11	12372	20190821_JH_MUT_Ubi	131.48	69.38	27888000	0	7752300	10174000	0	1657200	5185100	3119900	0	0			5267	1716	4641	14864;14865;14866;14867;14868	15618;15619;15620;15621;15622	15619				4
TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR	Unmodified	3724.7129	0.71289229	6	sp|P05787|K2C8_HUMAN;CON__P05787;sp|P05787-2|K2C8_HUMAN	yes	no	0	0	0	0	0			1							49.584	49.584	3	5.5877E-05	13839	20190821_JH_WT_Ubi	53.019	35.684	1729400	0	0	1729400	0	0	0	0	0	0		+	5268	6	4642	14869	15623	15623				1
TTSQKVAR	GlyGly (K)	1003.5411	0.54105675	1882	sp|Q9BV40|VAMP8_HUMAN	yes	yes	0	0	1	0	1		1								2.0823	2.0823	2	0.012235	338	20190821_JH_MUT_Ubi	134.81	70.603	850390	0	850390	0	0	0	0	0	0	0			5269	1882	4643	14870	15624	15624		1826		1
TTSSANNPNLMYQDECDRR	Oxidation (M)	2286.9594	0.95935711	1729	sp|Q92841-1|DDX17_HUMAN;sp|Q92841-3|DDX17_HUMAN;sp|Q92841-2|DDX17_HUMAN;sp|Q92841|DDX17_HUMAN	yes	no	0	0	0	1	1			1					1	1	23.706	23.706	3	0.0069968	6086	20190902_JH_WT_Ubi_3	69.331	46.701	7398200	0	0	1557300	0	0	0	0	2638500	3202300			5270	1729	4644	14871;14872;14873	15625;15626;15627	15627			983	3
TTWGDGGENSPCNVVSKQPGPVTNGQLQQPTTGAASGGYIK	GlyGly (K);Deamidation (NQ)	4272.9982	0.99819204	109	sp|O00161|SNP23_HUMAN	yes	yes	0	1	1	0	1	1	2	1	1	1	1				37.835	37.835	3;4	4.8513E-12	9288	20190902_JH_EV_Ubi_2	92.648	65.428	14821000	3540300	3951900	3080500	1699700	612500	1936400	0	0	0			5271	109	4645	14874;14875;14876;14877;14878;14879;14880	15628;15629;15630;15631;15632;15633;15634;15635	15630	45;46;47;756;757;758;759	93		8
TVAEGHGDTLYVGTTR	Unmodified	1675.8166	0.81656291	365	sp|O95834|EMAL2_HUMAN;sp|O95834-2|EMAL2_HUMAN;sp|O95834-3|EMAL2_HUMAN	yes	no	0	0	0	0	0			1					1		26.295	26.295	3	0.017697	5197	20190821_JH_WT_Ubi	54.402	20.138	7700800	0	0	2423700	0	0	0	0	5277200	0			5272	365	4646	14881;14882	15636;15637	15636				2
TVAGQDAVIVLLGTR	Unmodified	1511.8671	0.86714192	722	sp|P30043|BLVRB_HUMAN	yes	yes	0	0	0	0	0		1	1		1	1	1	1	1	46.618	46.618	2;3	3.8159E-16	12695	20190821_JH_WT_Ubi	169.58	111.79	31374000	0	3323200	7977800	0	1654600	3686300	2799400	5305400	6627000			5273	722	4647	14883;14884;14885;14886;14887;14888;14889	15638;15639;15640;15641;15642;15643;15644	15642				7
TVALIKSAAVAER	GlyGly (K)	1441.8253	0.8252771	1798	sp|Q96LD4|TRI47_HUMAN;sp|Q96LD4-2|TRI47_HUMAN	yes	no	0	0	1	0	1		1				1	1			28.721	28.721	3	0.0050997	6487	20190902_JH_MUT_Ubi_3	86.756	52.788	5429600	0	761200	0	0	0	2728500	1939900	0	0			5274	1798	4648	14890;14891;14892	15645;15646;15647	15647		1761		3
TVDTKQAHELAK	GlyGly (K)	1453.7525	0.75250609	384	sp|P01111|RASN_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1	1		17.417	17.417	3	0.0011778	3628	20190902_JH_EV_Ubi_2	110.84	78.232	104810000	9594700	6860000	0	25667000	27441000	9781900	10609000	14858000	0			5275	384	4649	14893;14894;14895;14896;14897;14898;14899	15648;15649;15650;15651;15652;15653;15654	15649		352		7
TVDTKQAQDLAR	GlyGly (K)	1458.7427	0.74266969	385	sp|P01116-2|RASK_HUMAN;sp|P01116|RASK_HUMAN	yes	no	0	0	1	0	1	1		1		1	1			1	22.159	22.159	3	0.00087401	4638	20190902_JH_EV_Ubi_3	114.71	69.453	31108000	4269200	0	9016900	0	4092400	4173900	0	0	9555400			5276	385	4650	14900;14901;14902;14903;14904	15655;15656;15657;15658;15659	15656		353		5
TVEEAENIAVTSGVVR	Unmodified	1672.8632	0.86317875	312	sp|O76070|SYUG_HUMAN	yes	yes	0	0	0	0	0			1							36.462	36.462	3	0.0066534	8563	20190821_JH_WT_Ubi	85.473	53.751	1967700	0	0	1967700	0	0	0	0	0	0			5277	312	4651	14905	15660	15660				0
TVEEQDCLSQQDLSPQLKHSEPKNK	GlyGly (K);3 Deamidation (NQ)	3054.4088	0.40878812	1567	sp|Q86YC2|PALB2_HUMAN	yes	yes	0	3	1	0	2			1							45.352	45.352	3	0.027955	12137	20190821_JH_WT_Ubi	41.296	10.321	2364500	0	0	2364500	0	0	0	0	0	0			5278	1567	4652	14906	15661	15661	1118;1119;1120	1551		0
TVEEVLGHFGVNESTGLSLEQVK	Unmodified	2471.2544	0.25438337	591	sp|P16615-5|AT2A2_HUMAN;sp|P16615-2|AT2A2_HUMAN;sp|P16615-3|AT2A2_HUMAN;sp|P16615-4|AT2A2_HUMAN;sp|P16615|AT2A2_HUMAN	yes	no	0	0	0	0	0	1									45.033	45.033	3	0.011148	12138	20190821_JH_EV_Ubi	49.076	19.348	1073600	1073600	0	0	0	0	0	0	0	0			5279	591	4653	14907	15662	15662				1
TVEGVLIVHEHR	Unmodified	1387.7572	0.75719754	221	sp|O43809|CPSF5_HUMAN	yes	yes	0	0	0	0	0		1	1							25.752	25.752	3	0.0099868	5016	20190821_JH_WT_Ubi	75.819	33.819	19115000	0	2371200	16744000	0	0	0	0	0	0			5280	221	4654	14908;14909	15663;15664	15664				2
TVEIPDPVEAGEEVK	Unmodified	1610.8039	0.80393254	645	sp|P21980|TGM2_HUMAN	yes	yes	0	0	0	0	0			1							39.291	39.291	3	0.0047348	9633	20190821_JH_WT_Ubi	81.904	47.154	0	0	0	0	0	0	0	0	0	0			5281	645	4655	14910	15665	15665				1
TVFAEHISDECK	Unmodified	1434.6449	0.64492948	804	sp|P39023|RL3_HUMAN	yes	yes	0	0	0	0	0								1		26.534	26.534	3	0.024025	7141	20190902_JH_WT_Ubi_2	60.161	23.737	13897000	0	0	0	0	0	0	0	13897000	0			5282	804	4656	14911	15666	15666				1
TVFEALQAPACHENMVK	Oxidation (M)	1959.9183	0.91826757	357	sp|O95782-2|AP2A1_HUMAN;sp|O95782|AP2A1_HUMAN	yes	no	0	0	0	1	0									1	32.176	32.176	3	0.036867	8814	20190902_JH_WT_Ubi_3	53.169	11.525	0	0	0	0	0	0	0	0	0	0			5283	357	4657	14912	15667	15667				1
TVGAALDILCPSGPIK	Unmodified	1610.8702	0.87017839	585	sp|P16278-2|BGAL_HUMAN;sp|P16278-3|BGAL_HUMAN;sp|P16278|BGAL_HUMAN	yes	no	0	0	0	0	0			1							44.984	44.984	2	3.1126E-05	12026	20190821_JH_WT_Ubi	112.02	79.609	1715000	0	0	1715000	0	0	0	0	0	0			5284	585	4658	14913	15668	15668				0
TVGTPIASVPGSTNTGTVPGSEKDSDSMETEEK	Oxidation (M);GlyGly (K)	3437.5628	0.56278215	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	1	1	1	1		1	1	1	1		1	1	32.036	32.036	3	5.8946E-07	9147	20190902_JH_WT_Ubi_2	81.507	62.644	50054000	7656100	0	5929000	8256200	6803700	4058400	0	6961500	10389000			5285	1833	4659	14914;14915;14916;14917;14918;14919;14920	15669;15670;15671;15672;15673;15674;15675;15676;15677	15676		1792;1794	1010	9
TVGTPIASVPGSTNTGTVPGSEKDSDSMETEEK	GlyGly (K)	3421.5679	0.56786753	1833	sp|Q99460-2|PSMD1_HUMAN;sp|Q99460|PSMD1_HUMAN	yes	no	0	0	1	0	1	1	1		1						33.801	33.801	3	0.00041959	7361	20190821_JH_MUT_Ubi	56.631	39.619	3667100	1477100	1491200	0	698850	0	0	0	0	0			5286	1833	4659	14921;14922;14923	15678;15679;15680	15680		1792;1794		3
TVHSGSLMLVTVELK	Oxidation (M)	1628.8807	0.88074307	115	sp|O00203-3|AP3B1_HUMAN;sp|O00203|AP3B1_HUMAN	yes	no	0	0	0	1	0				1	1	1				35.646	35.646	3	0.0078564	9523	20190902_JH_MUT_Ubi_2	71.513	18.512	6329900	0	0	0	2043900	0	4286000	0	0	0			5287	115	4660	14924;14925;14926	15681;15682;15683	15683			52	3
TVHYLPILFIDQLSNR	Unmodified	1928.052	0.051982576	1794	sp|Q96KA5-2|CLP1L_HUMAN;sp|Q96KA5|CLP1L_HUMAN	yes	no	0	0	0	0	0	1	1	1					1	1	49.938	49.938	3	6.202E-10	14533	20190902_JH_WT_Ubi_3	138.55	91.844	8073500	813300	553390	2736300	0	0	0	0	1458500	2512100			5288	1794	4661	14927;14928;14929;14930;14931	15684;15685;15686;15687;15688	15688				5
TVIFVATGEGK	Unmodified	1120.6128	0.61282471	337	sp|O95336|6PGL_HUMAN	yes	yes	0	0	0	0	0						1				33.125	33.125	2	0.0030063	8529	20190902_JH_MUT_Ubi_2	105.98	49.964	1428700	0	0	0	0	0	1428700	0	0	0			5289	337	4662	14932	15689	15689				1
TVIGCSGFHGDCLTLTK	Unmodified	1864.8812	0.88115378	629	sp|P20618|PSB1_HUMAN	yes	yes	0	0	0	0	0			1			1			1	33.972	33.972	3	0.0099988	9442	20190902_JH_WT_Ubi_3	60.209	32.24	28493000	0	0	14627000	0	0	6178100	0	0	7688200			5290	629	4663	14933;14934;14935	15690;15691;15692	15692				3
TVIVHGFTLGEK	Unmodified	1299.7187	0.71868677	2027	sp|Q9NSE4|SYIM_HUMAN	yes	yes	0	0	0	0	0			1							33.024	33.024	3	0.027398	7308	20190821_JH_WT_Ubi	57.52	29.193	8252900	0	0	8252900	0	0	0	0	0	0			5291	2027	4664	14936	15693	15693				1
TVKNCLALADDK	GlyGly (K)	1460.7293	0.72932781	281	sp|O75367-2|H2AY_HUMAN;sp|O75367-3|H2AY_HUMAN;sp|O75367|H2AY_HUMAN	yes	no	0	0	1	0	1	1	1	1		1					25.127	25.127	3	0.011999	4747	20190821_JH_EV_Ubi	79.492	14.313	11397000	1537600	2159500	5249400	0	2450600	0	0	0	0			5292	281	4665	14937;14938;14939;14940	15694;15695;15696;15697	15694		270		4
TVLCGTCGQPADKASASGSGAQVGGPISSGSSASSVTVTR	GlyGly (K)	3865.8171	0.81705656	390	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN	yes	no	0	0	1	0	1	1		1	1		1				32.56	32.56	3	3.5634E-12	8140	20190902_JH_MUT_Ubi_2	92.126	62.516	15923000	4076800	0	8109200	505090	0	3232000	0	0	0			5293	390	4666	14941;14942;14943;14944	15698;15699;15700;15701;15702	15700		361		5
TVLDLAVVLFETATLR	Unmodified	1760.0084	0.0083864269	557	sp|P14625|ENPL_HUMAN	yes	yes	0	0	0	0	0					1			1		59.989	59.989	3	0.001923	17225	20190902_JH_WT_Ubi_2	81.327	45.436	1223900	0	0	0	0	475700	0	0	748160	0			5294	557	4667	14945;14946	15703;15704	15704				2
TVLGTPEVLLGALPGAGGTQR	Unmodified	2006.116	0.1160394	818	sp|P40939|ECHA_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1		1	49.87	49.87	3	1.1539E-06	13986	20190821_JH_WT_Ubi	100.39	45.44	33973000	4101500	1980400	10186000	2083900	2337000	2185000	2113100	0	8986200			5295	818	4668	14947;14948;14949;14950;14951;14952;14953;14954	15705;15706;15707;15708;15709;15710;15711;15712	15711				8
TVMENFVAFVDK	Oxidation (M)	1414.6803	0.68025235	5	CON__P02769	yes	yes	0	0	0	1	0			1							41.021	41.021	2	0.031587	10341	20190821_JH_WT_Ubi	49.632	17.597	4877500	0	0	4877500	0	0	0	0	0	0		+	5296	5	4669	14955	15713	15713			4	0
TVNDIVSALLNAEDEKREEEK	GlyGly (K)	2515.2402	0.24018987	1244	sp|Q13490-2|BIRC2_HUMAN;sp|Q13490|BIRC2_HUMAN	yes	no	0	0	1	0	2			1							43.738	43.738	4	0.017243	11517	20190821_JH_WT_Ubi	48.372	19.96	2634400	0	0	2634400	0	0	0	0	0	0			5297	1244	4670	14956	15714	15714		1312		1
TVPPAVTGITFLSGGQSEEEASINLNAINK	Unmodified	3056.5666	0.56660939	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	50.888	50.888	3	4.9344E-11	14471	20190902_JH_MUT_Ubi_2	103.33	70.304	76565000	2018900	5152800	31161000	631760	892920	3277900	3552400	12744000	17133000			5298	400	4671	14957;14958;14959;14960;14961;14962;14963;14964;14965	15715;15716;15717;15718;15719;15720;15721;15722;15723;15724	15720				10
TVPPAVTGITFLSGGQSEEEASINLNAINK	Deamidation (NQ)	3057.5506	0.55062497	400	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN	yes	no	0	1	0	0	0			1							51.583	51.583	3	0.0002819	14513	20190821_JH_WT_Ubi	69.71	43.501	3491600	0	0	3491600	0	0	0	0	0	0			5299	400	4671	14966	15725	15725	135;136;137			1
TVQDLTSVVQTLLQQMQDK	Oxidation (M)	2190.1202	0.12019808	292	sp|O75506|HSBP1_HUMAN	yes	yes	0	0	0	1	0	1		1	1	1					54.534	54.534	3	2.7556E-39	14538	20190821_JH_EV_Ubi	188.9	142.01	5226500	1833200	0	1392300	664130	1336900	0	0	0	0			5300	292	4672	14967;14968;14969;14970	15726;15727;15728;15729	15726			134	4
TVQGSGHQEHINIHK	Unmodified	1683.8441	0.84411507	1287	sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN	yes	no	0	0	0	0	0			1							16.068	16.068	3	0.010146	2918	20190821_JH_WT_Ubi	65.374	26.369	17636000	0	0	17636000	0	0	0	0	0	0			5301	1287	4673	14971	15730	15730				1
TVQPVAMGPDGLPVDASSVSNNYIQTLGR	Oxidation (M);Deamidation (NQ)	3002.4655	0.46551513	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN	yes	no	0	1	0	1	0			1							47.042	47.042	3	0.03111	12804	20190821_JH_WT_Ubi	45.042	16.896	2018600	0	0	2018600	0	0	0	0	0	0			5302	257	4674	14972	15731	15731	90;91;790		112	0
TVQTAAANAASTAASSAAQNAFK	Unmodified	2151.0556	0.055623984	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	0	0	0	0	1									37.788	37.788	3	0.025776	9336	20190821_JH_EV_Ubi	39.549	6.7331	1303000	1303000	0	0	0	0	0	0	0	0			5303	173	4675	14973	15732	15732				1
TVQTAAANAASTAASSAAQNAFKGNQI	GlyGly (K)	2677.3056	0.30558409	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1		40.309	40.309	3;4	3.0993E-78	12052	20190902_JH_WT_Ubi_2	218.81	179.46	161670000	34870000	33712000	29614000	7107800	16055000	5248100	23320000	11739000	0			5304	173	4676	14974;14975;14976;14977;14978;14979;14980;14981	15733;15734;15735;15736;15737;15738;15739;15740	15740		145		8
TVQTAAANAASTAASSAAQNAFKGNQI	GlyGly (K);Deamidation (NQ)	2678.2896	0.28959968	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	1	1	0	1	1	1		1	1	2	3			40.032	40.032	3	3.9489E-19	9709	20190902_JH_MUT_Ubi_3	141.69	104.05	28961000	2497900	2978400	0	1524500	1840600	8887800	11232000	0	0			5305	173	4676	14982;14983;14984;14985;14986;14987;14988;14989;14990	15741;15742;15743;15744;15745;15746;15747;15748;15749;15750	15748	63;64;65;769;770;771	145		10
TVQTAAANAASTAASSAAQNAFKGNQI	GlyGly (K);2 Deamidation (NQ)	2679.2736	0.27361526	173	sp|O15126|SCAM1_HUMAN	yes	yes	0	2	1	0	1	1						1			41.675	41.675	3	0.0053143	10980	20190902_JH_MUT_Ubi_3	57.152	13.977	999820	0	0	0	0	0	0	999820	0	0			5306	173	4676	14991;14992	15751;15752	15752	63;64;65;769;770;771	145		1
TVRPSVSPKDLELYENWNK	GlyGly (K);Deamidation (NQ)	2389.1914	0.19138918	1486	sp|Q6PIW4-2|FIGL1_HUMAN;sp|Q6PIW4|FIGL1_HUMAN	yes	no	0	1	1	0	2		1								44.875	44.875	4	0.035198	11386	20190821_JH_MUT_Ubi	47.855	19.383	562930	0	562930	0	0	0	0	0	0	0			5307	1486	4677	14993	15753	15753	469;470			0
TVSFKLGDLEEAPER	GlyGly (K)	1803.9003	0.90029254	1693	sp|Q8WUM9|S20A1_HUMAN	yes	yes	0	0	1	0	1	1			1	1	1	1			36.467	36.467	3	0.0054887	9014	20190902_JH_EV_Ubi_3	76.358	38.021	13631000	3515700	0	0	3113800	1931200	3076900	1993700	0	0			5308	1693	4678	14994;14995;14996;14997;14998	15754;15755;15756;15757;15758	15756		1688		5
TVSYNGILGPECGTK	GlyGly (K)	1708.809	0.80903469	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	1	0	0		1								34.998	34.998	2	0.0027067	7732	20190821_JH_MUT_Ubi	80.17	28.894	312390	0	312390	0	0	0	0	0	0	0			5309	645	4679	14999	15759	15759		620		1
TVSYNGILGPECGTKYLLNLNLEPFSEK	GlyGly (K);Deamidation (NQ)	3270.6118	0.61184502	645	sp|P21980|TGM2_HUMAN	yes	yes	0	1	1	0	1									1	52.313	52.313	3	0.0071439	15206	20190902_JH_WT_Ubi_3	68.97	38.461	745620	0	0	0	0	0	0	0	0	745620			5310	645	4680	15000	15760	15760	228;229	620		1
TVTAMDVVYALK	Oxidation (M)	1325.6901	0.69008876	1057	sp|P62805|H4_HUMAN	yes	yes	0	0	0	1	0		1								39.515	39.515	2	0.015195	9252	20190821_JH_MUT_Ubi	68.626	26.277	2098600	0	2098600	0	0	0	0	0	0	0			5311	1057	4681	15001	15761	15761			649	0
TVTAMDVVYALK	Unmodified	1309.6952	0.69517413	1057	sp|P62805|H4_HUMAN	yes	yes	0	0	0	0	0								1		45.265	45.265	2	0.0035314	13564	20190902_JH_WT_Ubi_2	102.06	61.068	15020000	0	0	0	0	0	0	0	15020000	0			5312	1057	4681	15002	15762	15762				1
TVTESSSSHPPEPQGLGLR	Unmodified	1977.9756	0.97558275	1885	sp|Q9BW04|SARG_HUMAN	yes	yes	0	0	0	0	0							1			28.425	28.425	3	0.023118	6515	20190902_JH_MUT_Ubi_3	45.618	17.969	990190	0	0	0	0	0	0	990190	0	0			5313	1885	4682	15003	15763	15763				1
TVTNAVVTVPAYFNDSQR	Unmodified	1980.9905	0.99050453	519	sp|P11142|HSP7C_HUMAN;sp|P11142-2|HSP7C_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	41.615	41.615	3	2.5622E-54	12467	20190902_JH_WT_Ubi_2	216.71	142.83	146470000	15119000	7208500	28878000	11268000	17440000	10824000	7537100	23659000	24538000			5314	519	4683	15004;15005;15006;15007;15008;15009;15010;15011;15012	15764;15765;15766;15767;15768;15769;15770;15771;15772	15771				9
TVTSGSIQPVTQAPQAGQMVDTKR	Oxidation (M);GlyGly (K)	2629.313	0.31297766	1896	sp|Q9BXF6|RFIP5_HUMAN	yes	yes	0	0	1	1	1		1				1	1			28.428	28.428	3	2.4545E-06	6752	20190902_JH_MUT_Ubi_2	89.659	39.423	3938100	0	892990	0	0	0	2129100	916030	0	0			5315	1896	4684	15013;15014;15015	15773;15774;15775;15776	15774		1836	1040	4
TVWSSGDDKEQLVK	GlyGly (K)	1704.8319	0.83187862	199	sp|O43291-2|SPIT2_HUMAN;sp|O43291|SPIT2_HUMAN	yes	no	0	0	1	0	1	1	1								29.289	29.289	3	0.023032	6172	20190821_JH_EV_Ubi	61.375	26.691	10500000	4072000	6427700	0	0	0	0	0	0	0			5316	199	4685	15016;15017	15777;15778	15777		179;180		2
TVWSSGDDKEQLVKNTYVL	2 GlyGly (K)	2409.1812	0.18121843	199	sp|O43291-2|SPIT2_HUMAN;sp|O43291|SPIT2_HUMAN	yes	no	0	0	2	0	2							1			39.164	39.164	3	0.007513	10072	20190902_JH_MUT_Ubi_3	89.877	61.917	4153400	0	0	0	0	0	0	4153400	0	0			5317	199	4686	15018	15779	15779		179;180		1
TWDHFWLNEGHTVYLER	Unmodified	2202.0283	0.028287021	497	sp|P09960-3|LKHA4_HUMAN;sp|P09960-2|LKHA4_HUMAN;sp|P09960-4|LKHA4_HUMAN;sp|P09960|LKHA4_HUMAN	yes	no	0	0	0	0	0								1		40.792	40.792	4	0.012148	12108	20190902_JH_WT_Ubi_2	55.011	28.864	1655900	0	0	0	0	0	0	0	1655900	0			5318	497	4687	15019	15780	15780				1
TWHPEHFFCAQCGAFFGPEGFHEK	Unmodified	2922.2431	0.24312395	878	sp|P49023-4|PAXI_HUMAN;sp|P49023-2|PAXI_HUMAN;sp|P49023|PAXI_HUMAN;sp|P49023-3|PAXI_HUMAN	yes	no	0	0	0	0	0								1		40.22	40.22	5	0.010561	11900	20190902_JH_WT_Ubi_2	48.229	21.329	2596100	0	0	0	0	0	0	0	2596100	0			5319	878	4688	15020	15781	15781				1
TWKPTLVILR	Unmodified	1225.7547	0.75467834	174	sp|O15143|ARC1B_HUMAN	yes	yes	0	0	0	0	1		1	1			1	1	1	1	37.758	37.758	3	0.0048983	10184	20190902_JH_MUT_Ubi_2	128.03	89.013	11971000	0	1313300	3357400	0	0	1641900	1867300	1665700	2125500			5320	174	4689	15021;15022;15023;15024;15025;15026	15782;15783;15784;15785;15786;15787	15783				6
TWTLCGTPEYLAPEIILSKGYNK	GlyGly (K)	2767.3891	0.38910271	601	sp|P17612-2|KAPCA_HUMAN;sp|P17612|KAPCA_HUMAN;sp|P22694-8|KAPCB_HUMAN;sp|P22694-10|KAPCB_HUMAN;sp|P22694-4|KAPCB_HUMAN;sp|P22694-3|KAPCB_HUMAN;sp|P22694|KAPCB_HUMAN;sp|P22612|KAPCG_HUMAN;sp|P22694-5|KAPCB_HUMAN;sp|P22694-7|KAPCB_HUMAN;sp|P22694-6|KAPCB_HUMAN;sp|P22694-9|KAPCB_HUMAN;sp|P22694-2|KAPCB_HUMAN	yes	no	0	0	1	0	1		1					1			48.673	48.673	3	0.0028312	12905	20190821_JH_MUT_Ubi	62.792	35.757	1863100	0	1324600	0	0	0	0	538580	0	0			5321	601	4690	15027;15028	15788;15789	15788		589		2
TYASTEQEQDAEENGVTGVSGPGKEAK	GlyGly (K);Deamidation (NQ)	2896.2846	0.28463346	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	1	1	0	1	1	2	1	1	2	2	3	2	3	26.904	26.904	3	2.9613E-120	6985	20190902_JH_WT_Ubi_3	248.01	213.35	148780000	15903000	14012000	6356500	18223000	21526000	26760000	24411000	12030000	9555900			5322	760	4691	15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045	15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809	15807	272;894	734;741		19
TYDATTHFETTCDDIK	Unmodified	1916.8098	0.80982255	904	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	29.665	29.665	3	4.9444E-09	6388	20190821_JH_EV_Ubi	134.88	109.28	67854000	6829800	3722000	9156100	7073900	3824400	6915400	5357200	8874100	16102000			5323	904	4692	15046;15047;15048;15049;15050;15051;15052;15053;15054	15810;15811;15812;15813;15814;15815;15816;15817;15818	15810				9
TYDATTHFETTCDDIKNIYK	GlyGly (K)	2549.138	0.13803298	904	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN	yes	no	0	0	1	0	1						1				33.783	33.783	3	0.00020796	8806	20190902_JH_MUT_Ubi_2	86.367	49.074	919440	0	0	0	0	0	919440	0	0	0			5324	904	4693	15055	15819	15819		868		1
TYEGMMHSSCQQEMMDVK	4 Oxidation (M)	2254.8309	0.8309104	296	sp|O75608-2|LYPA1_HUMAN;sp|O75608|LYPA1_HUMAN	yes	no	0	0	0	4	0									1	18.666	18.666	3	0.0036234	4616	20190902_JH_WT_Ubi_3	98.573	93.12	1455900	0	0	0	0	0	0	0	0	1455900			5325	296	4694	15056	15820	15820			135;136;137;138	1
TYFSCTSAHTSTGDGTAMITR	Oxidation (M)	2279.9787	0.97869557	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1	1	27.791	27.791	3	2.3745E-29	7679	20190902_JH_WT_Ubi_2	166.47	147.77	60776000	0	2025200	9845100	0	0	1959900	4169100	16287000	26489000			5326	739	4695	15057;15058;15059;15060;15061;15062	15821;15822;15823;15824;15825;15826;15827	15826			460	7
TYFSCTSAHTSTGDGTAMITR	Unmodified	2263.9838	0.98378095	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN	yes	no	0	0	0	0	0			1					1	1	30.624	30.624	3	9.7658E-06	8627	20190902_JH_WT_Ubi_2	90.729	69.876	17683000	0	0	5905300	0	0	0	0	5028300	6749300			5327	739	4695	15063;15064;15065	15828;15829;15830	15829				3
TYGADLASVDFQHASEDAR	Unmodified	2051.9185	0.9184618	737	sp|P30740|ILEU_HUMAN	yes	yes	0	0	0	0	0			1	1	1	1	1	1	1	35.864	35.864	3	4.9405E-05	9583	20190902_JH_MUT_Ubi_2	101.9	66.593	25992000	0	0	5380600	2385900	1157700	1791300	1770900	5804300	7701100			5328	737	4696	15066;15067;15068;15069;15070;15071;15072	15831;15832;15833;15834;15835;15836;15837	15833				7
TYGLVPAAGEHYAPEDSSNSYYVVAVVR	Unmodified	3013.4458	0.44576597	471	sp|P08582|TRFM_HUMAN	yes	yes	0	0	0	0	0		1	1					1	1	43.211	43.211	3	1.7325E-16	11299	20190821_JH_WT_Ubi	120.54	94.325	29299000	0	1133300	12591000	0	0	0	0	8693300	6882000			5329	471	4697	15073;15074;15075;15076	15838;15839;15840;15841;15842;15843	15840				6
TYGLVPAAGEHYAPEDSSNSYYVVAVVR	Deamidation (NQ)	3014.4298	0.42978155	471	sp|P08582|TRFM_HUMAN	yes	yes	0	1	0	0	0			1							44.459	44.459	3	0.0010699	11805	20190821_JH_WT_Ubi	62.646	28.981	2623000	0	0	2623000	0	0	0	0	0	0			5330	471	4697	15077	15844	15844	177			1
TYGQNGHTHFGNDNFGPQEKTHQPK	GlyGly (K);Deamidation (NQ)	2953.3128	0.31279474	1916	sp|Q9C0K1-2|S39A8_HUMAN;sp|Q9C0K1-3|S39A8_HUMAN;sp|Q9C0K1|S39A8_HUMAN	yes	no	0	1	1	0	1									1	22.864	22.864	3	8.7732E-25	5826	20190902_JH_WT_Ubi_3	153.14	112.42	2575000	0	0	0	0	0	0	0	0	2575000			5331	1916	4698	15078	15845	15845	613	1851		1
TYQELLVNQNPIAQPLASR	Unmodified	2154.1433	0.14331678	2055	sp|Q9NX24|NHP2_HUMAN	yes	yes	0	0	0	0	0	1				1			1		44.011	44.011	3	4.916E-09	11107	20190902_JH_EV_Ubi_3	126.43	75.286	4197700	1357800	0	0	0	699960	0	0	2140000	0			5332	2055	4699	15079;15080;15081	15846;15847;15848	15847				3
TYSTSFTPMYHAVTK	Oxidation (M)	1748.808	0.80797206	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	1	0						1				29.019	29.019	3	0.029987	7000	20190902_JH_MUT_Ubi_2	50.897	15.123	2607700	0	0	0	0	0	2607700	0	0	0			5333	376	4700	15082	15849	15849			172	1
TYSYLTPDLWKETVFTK	GlyGly (K)	2205.0994	0.099386279	576	sp|P15880|RS2_HUMAN	yes	yes	0	0	1	0	1			1							46.209	46.209	3	0.022115	12507	20190821_JH_WT_Ubi	53.924	26.271	2039800	0	0	2039800	0	0	0	0	0	0			5334	576	4701	15083	15850	15850		568		1
TYTMDKQPLNTGEQK	Oxidation (M);GlyGly (K)	1882.8731	0.87309151	1511	sp|Q70CQ2-3|UBP34_HUMAN;sp|Q70CQ2-2|UBP34_HUMAN;sp|Q70CQ2|UBP34_HUMAN	yes	no	0	0	1	1	1	1			1	1					21.723	21.723	3	0.017548	3828	20190821_JH_EV_Ubi	65.565	36.925	5591700	1176500	0	0	2163300	2251900	0	0	0	0			5335	1511	4702	15084;15085;15086	15851;15852;15853	15851		1512	910	2
TYYMSGGLQPVPIVFR	Oxidation (M)	1842.9338	0.93384128	522	sp|P11177|ODPB_HUMAN;sp|P11177-2|ODPB_HUMAN	yes	no	0	0	0	1	0			1							45.858	45.858	2	6.1959E-05	12370	20190821_JH_WT_Ubi	119.21	75.701	3394400	0	0	3394400	0	0	0	0	0	0			5336	522	4703	15087	15854	15854			313	1
TYYMSGGLQPVPIVFR	Unmodified	1826.9389	0.93892665	522	sp|P11177|ODPB_HUMAN;sp|P11177-2|ODPB_HUMAN	yes	no	0	0	0	0	0			1							48.617	48.617	2	0.00025371	13503	20190821_JH_WT_Ubi	111.12	69.082	2270100	0	0	2270100	0	0	0	0	0	0			5337	522	4703	15088	15855	15855				0
VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR	GlyGly (K)	3746.8785	0.87851783	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	1	0	1		1								52.571	52.571	4	3.3098E-06	13914	20190821_JH_MUT_Ubi	74.476	58.233	1890700	0	1890700	0	0	0	0	0	0	0			5338	770	4704	15089	15856	15856		756		1
VAEDEAEAAAAAKFTGLSK	GlyGly (K)	1991.98	0.97999942	463;462	sp|P08195|4F2_HUMAN;sp|P08195-3|4F2_HUMAN;sp|P08195-4|4F2_HUMAN;sp|P08195-2|4F2_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1		36.938	36.938	3	2.2391E-30	9153	20190821_JH_EV_Ubi	173.28	130.23	113190000	20087000	9149700	12984000	11597000	22905000	16727000	19743000	0	0			5339	462;463	4705	15090;15091;15092;15093;15094;15095;15096;15097	15857;15858;15859;15860;15861;15862;15863;15864	15857		470;471		8
VAGHPNIVINNAAGNFISPTER	Unmodified	2290.1818	0.18182755	1383	sp|Q16698-2|DECR_HUMAN;sp|Q16698|DECR_HUMAN	yes	no	0	0	0	0	0			1				1	1	1	36.584	36.584	3	1.4273E-09	8696	20190821_JH_WT_Ubi	122.16	89.163	39588000	0	0	15156000	0	0	0	792470	8060000	15579000			5340	1383	4706	15098;15099;15100;15101	15865;15866;15867;15868	15866				4
VAHALAEGLGVIACIGEK	Unmodified	1806.9662	0.96620404	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN;sp|P60174-4|TPIS_HUMAN	yes	no	0	0	0	0	0	1	1	1			1		1	1	41.785	41.785	3	5.5539E-05	10333	20190821_JH_MUT_Ubi	105.53	71.842	78716000	3916100	7004000	39652000	0	0	8203600	0	8916600	11023000			5341	997	4707	15102;15103;15104;15105;15106;15107	15869;15870;15871;15872;15873;15874	15870				6
VAHILNISPPLNLNPVWFK	Unmodified	2171.2255	0.22553027	1500	sp|Q6YN16|HSDL2_HUMAN	yes	yes	0	0	0	0	0		1	1					1		50.558	50.558	3	1.7189E-23	14169	20190821_JH_WT_Ubi	162.81	137.66	24821000	0	5324000	16149000	0	0	0	0	3348200	0			5342	1500	4708	15108;15109;15110	15875;15876;15877	15876				3
VAHPIRPKPPSATSIPAILK	Unmodified	2092.2521	0.25207937	2174	sp|Q9UMS4|PRP19_HUMAN	yes	yes	0	0	0	0	2					1					30.569	30.569	4	0.015662	7091	20190902_JH_EV_Ubi_3	55.322	46.979	4604200	0	0	0	0	4604200	0	0	0	0			5343	2174	4709	15111	15878	15878				1
VALIGSPVDLTYTYDHLGDSPK	Unmodified	2360.19	0.1899922	708	sp|P28331-3|NDUS1_HUMAN;sp|P28331-4|NDUS1_HUMAN;sp|P28331-5|NDUS1_HUMAN;sp|P28331|NDUS1_HUMAN;sp|P28331-2|NDUS1_HUMAN	yes	no	0	0	0	0	0								1	1	46.15	46.15	3	0.0081098	13454	20190902_JH_WT_Ubi_3	53.327	26.779	10617000	0	0	0	0	0	0	0	5602700	5014700			5344	708	4710	15112;15113	15879;15880	15880				2
VAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR	Oxidation (M)	3224.7268	0.72675562	509	sp|P10515|ODP2_HUMAN	yes	yes	0	0	0	1	0					1					52.939	52.939	3	0.0031247	12714	20190902_JH_EV_Ubi_3	47.647	26.969	400930	0	0	0	0	400930	0	0	0	0			5345	509	4711	15114	15881	15881			295	1
VAPDEHPILLTEAPLNPK	Unmodified	1953.0571	0.057127534	1420	sp|Q562R1|ACTBL_HUMAN	yes	yes	0	0	0	0	0					1					35.834	35.834	3	0.00026364	8793	20190902_JH_EV_Ubi_3	91.657	1.7911	90271000	0	0	0	0	90271000	0	0	0	0			5346	1420	4712	15115	15882	15882				1
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	0	0	0	1	1	1	1		1	1	1	1	36.103	36.103	3	2.049E-06	8952	20190902_JH_MUT_Ubi_3	119.56	8.1243	2915000000	115900000	19296000	780180000	98661000	0	47931000	28865000	1000100000	824030000			5347	1000;1087	4713	15116;15117;15118;15119;15120;15121;15122;15123	15883;15884;15885;15886;15887;15888;15889;15890	15887				8
VAPEEHPVLLTEAPLNPKANR	GlyGly (K)	2408.2812	0.28120724	1000;1087	sp|P60709|ACTB_HUMAN;sp|P63261|ACTG_HUMAN	no	no	0	0	1	0	1	2	1		1	1	1	1	1		32.842	32.842	3;4	0.00098263	9423	20190902_JH_WT_Ubi_2	72.489	49.316	111530000	15637000	11850000	0	13967000	11302000	19855000	13011000	25905000	0			5348	1000;1087	4714	15124;15125;15126;15127;15128;15129;15130;15131	15891;15892;15893;15894;15895;15896;15897;15898	15898		986		8
VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR	Unmodified	3118.5796	0.57957411	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	0	0	0	0			1					1	1	36.788	36.788	3	3.6835E-12	10329	20190902_JH_WT_Ubi_3	107.24	84.349	21903000	0	0	6561000	0	0	0	0	5871000	9471500			5349	1306	4715	15132;15133;15134	15899;15900;15901	15901				3
VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR	Deamidation (NQ)	3119.5636	0.56358969	1306	sp|Q14764|MVP_HUMAN	yes	yes	0	1	0	0	0									1	37.473	37.473	3	1.4356E-06	10610	20190902_JH_WT_Ubi_3	85.76	66.023	1893300	0	0	0	0	0	0	0	0	1893300			5350	1306	4715	15135	15902	15902	417			1
VAVAIPNRPPDAVLTDTTSLNQAALYR	Unmodified	2865.5349	0.53485575	923	sp|P51659-3|DHB4_HUMAN;sp|P51659|DHB4_HUMAN;sp|P51659-2|DHB4_HUMAN	yes	no	0	0	0	0	1			1					1		44.112	44.112	3	0.00038907	11641	20190821_JH_WT_Ubi	78.122	59.874	7232700	0	0	4842100	0	0	0	0	2390700	0			5351	923	4716	15136;15137	15903;15904	15903				2
VAVCDMMEGKCPCPEPLR	2 Oxidation (M);GlyGly (K)	2293.9622	0.96219934	1969	sp|Q9H832-2|UBE2Z_HUMAN;sp|Q9H832|UBE2Z_HUMAN	yes	no	0	0	1	2	1		1	1			1	1	1	1	27.462	27.462	3	3.0426E-05	6345	20190902_JH_MUT_Ubi_2	107.63	78.999	19063000	0	799090	3639600	0	0	2432300	1748100	5493300	4951000			5352	1969	4717	15138;15139;15140;15141;15142;15143	15905;15906;15907;15908;15909;15910;15911	15906		1901	1071;1072	7
VAVCDMMEGKCPCPEPLR	GlyGly (K)	2261.9724	0.9723701	1969	sp|Q9H832-2|UBE2Z_HUMAN;sp|Q9H832|UBE2Z_HUMAN	yes	no	0	0	1	0	1			1							35.15	35.15	3	0.0017351	8069	20190821_JH_WT_Ubi	75.968	52.242	1375700	0	0	1375700	0	0	0	0	0	0			5353	1969	4717	15144	15912	15912		1901		1
VAVEEVDEEGK	Unmodified	1202.5667	0.56666238	390;391	sp|P02545-3|LMNA_HUMAN;sp|P02545|LMNA_HUMAN;sp|P02545-5|LMNA_HUMAN;sp|P02545-4|LMNA_HUMAN;sp|P02545-6|LMNA_HUMAN;sp|P02545-2|LMNA_HUMAN	no	no	0	0	0	0	0									1	25.154	25.154	2	0.015153	6505	20190902_JH_WT_Ubi_3	79.07	49.983	21226000	0	0	0	0	0	0	0	0	21226000			5354	390;391	4718	15145	15913	15913				0
VAVEYLDPSPEVQKK	GlyGly (K)	1814.9414	0.94142907	213	sp|O43684-2|BUB3_HUMAN;sp|O43684|BUB3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1		1	1	1	31.593	31.593	3	0.0012895	6522	20190821_JH_MUT_Ubi	98	71.459	29786000	2718900	3281700	5555600	1389500	2141900	0	0	6978700	7720100			5355	213	4719	15146;15147;15148;15149;15150;15151;15152;15153	15914;15915;15916;15917;15918;15919;15920;15921	15917		192;193		8
VAVLGASGGIGQPLSLLLK	Unmodified	1792.0822	0.082220072	816	sp|P40926-2|MDHM_HUMAN;sp|P40926|MDHM_HUMAN	yes	no	0	0	0	0	0		1	1							53.016	53.016	2	0.0011351	14029	20190821_JH_MUT_Ubi	91.307	66.01	31576000	0	14058000	17518000	0	0	0	0	0	0			5356	816	4720	15154;15155	15922;15923	15922				0
VAVLISGTGSNLQALIDSTR	Unmodified	2014.1059	0.10586864	648	sp|P22102|PUR2_HUMAN	yes	yes	0	0	0	0	0		1								49.552	49.552	3	2.0816E-09	13018	20190821_JH_MUT_Ubi	127.53	94.606	1155000	0	1155000	0	0	0	0	0	0	0			5357	648	4721	15156	15924	15924				1
VAVPSTIHCDHLIEAQVGGEK	Unmodified	2259.1318	0.13176581	1847	sp|Q99798|ACON_HUMAN	yes	yes	0	0	0	0	0			1						1	32.214	32.214	4	0.017265	7054	20190821_JH_WT_Ubi	45.347	24.908	28344000	0	0	17677000	0	0	0	0	0	10666000			5358	1847	4722	15157;15158	15925;15926	15925				2
VAVQECGPPAVSWVPEEGEKLDQEDEDQVK	GlyGly (K)	3480.5991	0.59910808	870	sp|P48065|S6A12_HUMAN	yes	yes	0	0	1	0	1		1								41.008	41.008	3	0.014825	9887	20190821_JH_MUT_Ubi	40.668	24.22	859960	0	859960	0	0	0	0	0	0	0			5359	870	4723	15159	15927	15927		850		1
VAWLNRSNILYAGNDRWTSDPR	3 Deamidation (NQ)	2606.2514	0.25136368	86	sp|A6NGN9|IGLO5_HUMAN	yes	yes	0	3	0	0	2			1							32.757	32.757	3	0.014043	7197	20190821_JH_WT_Ubi	49.326	7.6369	2170800	0	0	2170800	0	0	0	0	0	0			5360	86	4724	15160	15928	15928	30;31;32			1
VCALLSCTSHKDYPFHEEF	GlyGly (K)	2453.078	0.078015685	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	1	0	1			1							36.37	36.37	3	0.018128	8528	20190821_JH_WT_Ubi	52.569	31.716	5187300	0	0	5187300	0	0	0	0	0	0			5361	563	4725	15161	15929	15929		555		1
VCEGDIVQLEVK	GlyGly (K);Deamidation (NQ)	1502.7287	0.72865911	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN;sp|Q8WZ42-3|TITIN_HUMAN;sp|Q8WZ42-10|TITIN_HUMAN;sp|Q8WZ42-9|TITIN_HUMAN;sp|Q8WZ42-6|TITIN_HUMAN	yes	no	0	1	1	0	0					1					19.583	19.583	3	0.02966	4088	20190902_JH_EV_Ubi_3	60.598	17.096	0	0	0	0	0	0	0	0	0	0			5362	1705	4726	15162	15930	15930	1170	1699		1
VCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD	Oxidation (M);GlyGly (K);Deamidation (NQ)	4402.0192	0.019186762	519	sp|P11142|HSP7C_HUMAN	yes	yes	0	1	1	1	1			1							51.171	51.171	3	0.012943	14376	20190821_JH_WT_Ubi	41.721	16.965	1150000	0	0	1150000	0	0	0	0	0	0			5363	519	4727	15163	15931	15931	857	514	308;309	0
VDAAWEPSKNTLIMGLGTQGAEK	Oxidation (M);GlyGly (K)	2545.2483	0.24825214	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	1	1		1				1				39.457	39.457	3	6.3758E-06	9396	20190821_JH_MUT_Ubi	92.29	55.053	3048700	0	1975600	0	0	0	1073100	0	0	0			5364	1570	4728	15164;15165	15932;15933	15932		1563;1567	927	2
VDAAWEPSKNTLIMGLGTQGAEK	GlyGly (K)	2529.2533	0.25333751	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	0	1	0	1		1								41.945	41.945	3	0.00046074	10304	20190821_JH_MUT_Ubi	74.703	41.907	1904900	0	1904900	0	0	0	0	0	0	0			5365	1570	4728	15166	15934	15934		1563;1567		1
VDAAWEPSKNTLIMGLGTQGAEK	GlyGly (K);Deamidation (NQ)	2530.2374	0.2373531	1570	sp|Q86YT6|MIB1_HUMAN	yes	yes	0	1	1	0	1							1			41.379	41.379	3	0.022813	10807	20190902_JH_MUT_Ubi_3	53.779	23.352	0	0	0	0	0	0	0	0	0	0			5366	1570	4728	15167	15935	15935	514	1563;1567		1
VDANEEVEALIVKSPQK	GlyGly (K)	1982.032	0.032034995	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1		1	1	1		1	1	1	1	37.611	37.611	3	5.3235E-19	9274	20190902_JH_EV_Ubi_2	159.69	102.28	45534000	0	5058700	10118000	5061100	0	5860700	5241500	5802600	8390900			5367	760	4729	15168;15169;15170;15171;15172;15173;15174	15936;15937;15938;15939;15940;15941;15942	15936		733		7
VDATAETDLAKR	GlyGly (K)	1402.7052	0.70522155	546	sp|P13667|PDIA4_HUMAN	yes	yes	0	0	1	0	1		1								24.32	24.32	3	0.031135	3957	20190821_JH_MUT_Ubi	65.695	22.951	600680	0	600680	0	0	0	0	0	0	0			5368	546	4730	15175	15943	15943				1
VDATEESDLAQQYGVR	Unmodified	1779.8275	0.82752153	444	sp|P07237|PDIA1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	36.285	36.285	3	3.1539E-65	10209	20190902_JH_WT_Ubi_3	221.86	152.52	13159000	0	0	3027200	0	0	0	0	5232400	4899400			5369	444	4731	15176;15177;15178	15944;15945;15946	15946				2
VDCTANTNTCNKYGVSGYPTLK	GlyGly (K)	2576.1635	0.16353623	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			30.826	30.826	3	1.7774E-08	6292	20190821_JH_MUT_Ubi	114.1	86.6	11545000	1225200	2896500	0	0	0	4596100	2826700	0	0			5370	730	4732	15179;15180;15181;15182	15947;15948;15949;15950	15948		709		4
VDCTQHYELCSGNQVR	Unmodified	1964.8469	0.84689354	1636	sp|Q8NBS9-2|TXND5_HUMAN;sp|Q8NBS9|TXND5_HUMAN	yes	no	0	0	0	0	0								1	1	26.032	26.032	3	0.0010625	6743	20190902_JH_WT_Ubi_3	87.363	29.284	3674100	0	0	0	0	0	0	0	1920600	1753400			5371	1636	4733	15183;15184	15951;15952	15952				2
VDEAVAVLQAHHAK	Unmodified	1486.7892	0.78922595	1230	sp|Q13310-2|PABP4_HUMAN;sp|Q13310|PABP4_HUMAN;sp|Q13310-3|PABP4_HUMAN	yes	no	0	0	0	0	0								1		35.956	35.956	3	0.029006	10477	20190902_JH_WT_Ubi_2	50.145	10.966	3192500	0	0	0	0	0	0	0	3192500	0			5372	1230	4734	15185	15953	15953				1
VDEFPLCGHMVSDEYEQLSSEALEAAR	Unmodified	3081.3696	0.36956584	698	sp|P27635|RL10_HUMAN	yes	yes	0	0	0	0	0			1							49.311	49.311	3	8.1208E-07	13746	20190821_JH_WT_Ubi	88.418	57.652	3368900	0	0	3368900	0	0	0	0	0	0			5373	698	4735	15186	15954	15954				1
VDELMQDIADQQELAEEISTAISK	Oxidation (M);Deamidation (NQ)	2692.2637	0.26368701	1950	sp|Q9H444|CHM4B_HUMAN	yes	yes	0	1	0	1	0			1							54.32	54.32	3	4.8166E-06	15598	20190821_JH_WT_Ubi	89.043	51.931	1331300	0	0	1331300	0	0	0	0	0	0			5374	1950	4736	15187	15955	15955	1246		1061	1
VDENGKISR	GlyGly (K)	1130.568	0.56799978	1074	sp|P62979|RS27A_HUMAN	yes	yes	0	0	1	0	1	1		1		1	1	1	1	1	16.049	16.049	3	0.0091322	3984	20190902_JH_WT_Ubi_2	95.358	26.083	201180000	3828800	0	47287000	0	5749300	21212000	9984200	69146000	43973000			5375	1074	4737	15188;15189;15190;15191;15192;15193;15194	15956;15957;15958;15959;15960;15961;15962	15961		1057		7
VDGAEWGVDLPSVEAQLGSHR	Unmodified	2221.0764	0.076359426	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0		1	1			1		1	1	44.944	44.944	3	2.0527E-09	11979	20190821_JH_WT_Ubi	122.19	82.679	21285000	0	2514200	11388000	0	0	1129200	0	2777500	3476300			5376	1332	4738	15195;15196;15197;15198;15199	15963;15964;15965;15966;15967;15968	15966				6
VDGEKDTYSYLA	GlyGly (K)	1473.6624	0.66235368	1254	sp|Q13616|CUL1_HUMAN	yes	yes	0	0	1	0	1						1				33.234	33.234	2	0.021127	8564	20190902_JH_MUT_Ubi_2	78.939	55.585	1417300	0	0	0	0	0	1417300	0	0	0			5377	1254	4739	15200	15969	15969		1321		0
VDIDAPDVDVHGPDWHLK	Unmodified	2026.9749	0.97485447	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	0	0	0	1		1			1	1	1		38.063	38.063	4	0.0021577	11267	20190902_JH_WT_Ubi_2	71.545	5.2561	40036000	4670300	0	19720000	0	0	3873300	2818000	8954600	0			5378	1190	4740	15201;15202;15203;15204;15205	15970;15971;15972;15973;15974	15974				5
VDIDVPDVNLEAPEGKLK	GlyGly (K)	2064.0739	0.07389981	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1									40.971	40.971	3	0.0093876	10555	20190821_JH_EV_Ubi	61.962	34.813	869880	869880	0	0	0	0	0	0	0	0			5379	1190	4741	15206	15975	15975		1233		1
VDIDVPDVNVQGPDWHLK	Unmodified	2045.0218	0.02180466	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0		1	1							44.176	44.176	3	0.010978	11199	20190821_JH_MUT_Ubi	56.774	38.478	5968900	0	817810	5151000	0	0	0	0	0	0			5380	1190	4742	15207;15208	15976;15977	15976				2
VDIEAPDVSLEGPEGKLK	GlyGly (K)	2009.0317	0.031700644	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1				38.107	38.107	3	0.00021174	9528	20190821_JH_EV_Ubi	97.235	60.291	20552000	4554500	2424600	0	3783600	4321900	5466900	0	0	0			5381	1190	4743	15209;15210;15211;15212;15213	15978;15979;15980;15981;15982	15978		1186;1234		5
VDIEGPDVNIEGPEGKLK	GlyGly (K)	2022.0269	0.026949617	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1	1						1			36.249	36.249	3	0.018247	9065	20190902_JH_MUT_Ubi_3	54.412	18.753	4469300	1933200	0	0	0	0	0	2536100	0	0			5382	1190	4744	15214;15215	15983;15984	15984		1235;1236		2
VDIKAPDVEGQGLDWSLK	GlyGly (K)	2083.0586	0.058584096	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1		1		1		1			41.947	41.947	3	0.00015276	10915	20190902_JH_MUT_Ubi_3	99.392	62.975	6376600	2649900	0	1978800	0	315400	0	1432500	0	0			5383	1190	4745	15216;15217;15218;15219	15985;15986;15987;15988	15987		1237		4
VDINAPDVDVHGPDWHLK	Unmodified	2025.9908	0.99083888	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0								1		37.545	37.545	4	0.023379	11034	20190902_JH_WT_Ubi_2	43.37	25.669	3318000	0	0	0	0	0	0	0	3318000	0			5384	1190	4746	15220	15989	15989				1
VDINAPDVDVQGPDWHLK	Unmodified	2016.9905	0.99050453	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	0	0	0	1		1							41.158	41.158	3	0.00020299	10395	20190821_JH_WT_Ubi	94.639	49.524	12786000	1728500	0	11058000	0	0	0	0	0	0			5385	1190	4747	15221;15222	15990;15991	15991				2
VDINAPDVEVQGKVK	GlyGly (K)	1723.9105	0.9104633	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								31.569	31.569	3	0.029539	6432	20190821_JH_MUT_Ubi	54.094	33.253	1017300	0	1017300	0	0	0	0	0	0	0			5386	1190	4748	15223	15992	15992		1238		1
VDINAPDVGVQGPDWHLK	Unmodified	1958.985	0.98502522	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1					1	1	40.398	40.398	3	0.010957	10149	20190821_JH_WT_Ubi	56.799	4.2989	8633200	0	0	3281300	0	0	0	0	2646700	2705200			5387	1190	4749	15224;15225;15226	15993;15994;15995	15993				3
VDIVAINDPFIDLNYMVYMFQYDSTHGK	Unmodified	3307.557	0.55697268	407	sp|P04406|G3P_HUMAN	yes	yes	0	0	0	0	0					1		1	1	1	57.542	57.542	3	6.9868E-16	16127	20190902_JH_WT_Ubi_3	112.55	84.404	6650600	0	0	0	0	864250	0	1839500	1310300	2636500			5388	407	4750	15227;15228;15229;15230	15996;15997;15998;15999	15999				4
VDIVAINDPFIDLNYMVYMFQYDSTHGK	2 Oxidation (M)	3339.5468	0.54680192	407	sp|P04406|G3P_HUMAN	yes	yes	0	0	0	2	0								1		54.269	54.269	3	0.0015211	16176	20190902_JH_WT_Ubi_2	55.871	35.631	2198200	0	0	0	0	0	0	0	2198200	0			5389	407	4750	15231	16000	16000			200;201	1
VDKATMAQPLVFSK	Oxidation (M);Deamidation (NQ)	1550.8014	0.80143012	1300	sp|Q14678-2|KANK1_HUMAN;sp|Q14678|KANK1_HUMAN	yes	no	0	1	0	1	1									1	33.346	33.346	2	0.036422	9374	20190902_JH_WT_Ubi_3	41.689	14.36	101080000	0	0	0	0	0	0	0	0	101080000			5390	1300	4751	15232	16001	16001				1
VDLHFIALVHVDGHLYELDGR	Unmodified	2417.2492	0.24917883	570	sp|P15374|UCHL3_HUMAN	yes	yes	0	0	0	0	0							1			37.46	37.46	3	0.021318	9385	20190902_JH_MUT_Ubi_3	45.094	4.4794	4098200	0	0	0	0	0	0	4098200	0	0			5391	570	4752	15233	16002	16002				1
VDLYPTLSDQIRRWQK	2 Deamidation (NQ)	2019.0425	0.042540102	1689	sp|Q8TF62|AT8B4_HUMAN	yes	yes	0	2	0	0	2	1	1								45.874	45.874	3	0.0087835	11834	20190821_JH_MUT_Ubi	84.297	37.26	9744700	5651000	4093700	0	0	0	0	0	0	0			5392	1689	4753	15234;15235	16003;16004	16004	1166;1167			2
VDNDENEHQLSLR	Unmodified	1567.7227	0.72266253	438	sp|P06748-3|NPM_HUMAN;sp|P06748-2|NPM_HUMAN;sp|P06748|NPM_HUMAN	yes	no	0	0	0	0	0			1					1	1	24.712	24.712	3	0.0052742	4770	20190821_JH_WT_Ubi	82.202	28.004	91225000	0	0	25489000	0	0	0	0	31782000	33954000			5393	438	4754	15236;15237;15238	16005;16006;16007	16005				3
VDQIQEIVTGNPTVIK	Unmodified	1752.9622	0.96216452	863	sp|P46940|IQGA1_HUMAN	yes	yes	0	0	0	0	0			1		1					41.645	41.645	2	2.2006E-24	10682	20190821_JH_WT_Ubi	188.12	130.78	9414000	0	0	8660400	0	753650	0	0	0	0			5394	863	4755	15239;15240	16008;16009	16009				1
VDQSAVGFEYQGKTEK	GlyGly (K)	1898.901	0.90102082	1287	sp|Q14247-3|SRC8_HUMAN;sp|Q14247|SRC8_HUMAN;sp|Q14247-2|SRC8_HUMAN	yes	no	0	0	1	0	1						1	1			27.473	27.473	3	0.0030515	6487	20190902_JH_MUT_Ubi_2	79.652	49.518	4113400	0	0	0	0	0	1353000	2760400	0	0			5395	1287	4756	15241;15242	16010;16011	16010		1346		2
VDSDDQWGEYSCVFLPEPMGTANIQLHGPPR	Unmodified	3514.5922	0.59218898	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN	yes	no	0	0	0	0	0			1							50.098	50.098	3	0.0017701	14039	20190821_JH_WT_Ubi	59.561	31.538	1173500	0	0	1173500	0	0	0	0	0	0			5396	778	4757	15243	16012	16012				0
VDSDDQWGEYSCVFLPEPMGTANIQLHGPPR	Oxidation (M)	3530.5871	0.58710361	778	sp|P35613-4|BASI_HUMAN;sp|P35613-2|BASI_HUMAN;sp|P35613|BASI_HUMAN	yes	no	0	0	0	1	0									1	47.345	47.345	3	0.0047289	13890	20190902_JH_WT_Ubi_3	47.478	20.712	1795900	0	0	0	0	0	0	0	0	1795900			5397	778	4757	15244	16013	16013			497	1
VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	GlyGly (K)	3556.7057	0.70568164	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.15	39.15	3	3.6083E-18	10686	20190902_JH_MUT_Ubi_2	118.67	104.44	114780000	24870000	18700000	1982300	10667000	10845000	17087000	26309000	1756000	2569200			5398	2171	4758	15245;15246;15247;15248;15249;15250;15251;15252;15253	16014;16015;16016;16017;16018;16019;16020;16021;16022;16023	16019		2023;2024		10
VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	Acetyl (Protein N-term);GlyGly (K)	3598.7162	0.71624633	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	1	0	1	0	1	1	1		1	1	1	1		1	44.913	44.913	3	3.2252E-18	11616	20190821_JH_MUT_Ubi	117.15	100.88	72262000	11732000	13438000	0	7659600	10534000	14276000	12113000	0	2509000			5399	2171	4758	15254;15255;15256;15257;15258;15259;15260	16024;16025;16026;16027;16028;16029;16030;16031	16028		2023;2024		8
VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	GlyGly (K);Deamidation (NQ)	3557.6897	0.68969723	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	0	1	1	0	1					1		1			39.429	39.429	3	2.7035E-12	10108	20190902_JH_MUT_Ubi_3	108.3	84.111	2449300	0	0	0	0	1043600	0	1405700	0	0			5400	2171	4758	15261;15262	16032;16033	16033	1312	2023;2024		2
VDSTEYEVASQPEVETSPLGDGASPGPEQVKLK	Acetyl (Protein N-term);GlyGly (K);Deamidation (NQ)	3599.7003	0.70026191	2171	sp|Q9UM01|YLAT1_HUMAN	yes	yes	1	1	1	0	1						1				45.505	45.505	3	0.004155	13237	20190902_JH_MUT_Ubi_2	62.052	44.617	0	0	0	0	0	0	0	0	0	0			5401	2171	4758	15263	16034	16034	1312	2023;2024		1
VDTIGQMSCNPSFGGIGKGHLMR	Oxidation (M);GlyGly (K)	2591.2043	0.20429561	2214	sp|Q9Y2Z2-3|MTO1_HUMAN;sp|Q9Y2Z2-2|MTO1_HUMAN;sp|Q9Y2Z2-4|MTO1_HUMAN;sp|Q9Y2Z2|MTO1_HUMAN;sp|Q9Y2Z2-6|MTO1_HUMAN	yes	no	0	0	1	1	1									1	43.635	43.635	3	0.0076013	12708	20190902_JH_WT_Ubi_3	58.082	13.692	3674000	0	0	0	0	0	0	0	0	3674000			5402	2214	4759	15264	16035	16035		2066	1146	1
VDTNAPDLSLEGPEGKLK	GlyGly (K)	1996.0113	0.011299553	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1				1	1				34.639	34.639	3	0.0011255	9049	20190902_JH_MUT_Ubi_2	81.526	52.57	10051000	3192700	0	0	0	3634200	3224000	0	0	0			5403	1190	4760	15265;15266;15267	16036;16037;16038	16038		1190;1239		3
VDVDVPDVNIEGPDAKLK	GlyGly (K)	2036.0426	0.042599681	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1	1	1				1	1			38.627	38.627	3	0.00046734	10531	20190902_JH_MUT_Ubi_2	88.319	42.001	11723000	1819700	2041700	0	0	0	3378200	4483100	0	0			5404	1190	4761	15268;15269;15270;15271	16039;16040;16041;16042	16041		1240;1241		4
VDVECPDVNIEGPEGKWK	GlyGly (K)	2184.0157	0.015733004	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1	1			35.844	35.844	3	0.0052546	9672	20190902_JH_MUT_Ubi_2	68.41	33.319	2394600	0	0	0	0	0	1242600	1152100	0	0			5405	1190	4762	15272;15273	16043;16044	16043		1242;1243		2
VDVEVPDVSLEGPEGKLK	GlyGly (K)	2023.0474	0.047350708	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1			39.384	39.384	3	0.00019491	10065	20190821_JH_EV_Ubi	97.823	54.415	23993000	4203900	4692000	0	4796800	2547100	2602900	5150400	0	0			5406	1190	4763	15274;15275;15276;15277;15278;15279	16045;16046;16047;16048;16049;16050	16045		1244;1245		6
VDVSAPDVEAHGPEWNLK	Unmodified	1961.9483	0.94830537	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1					1		37.232	37.232	3	0.022114	8838	20190821_JH_WT_Ubi	47.217	20.488	14053000	0	0	6253000	0	0	0	0	7799900	0			5407	1190	4764	15280;15281	16051;16052	16051				2
VDYLSSLGKTQTAVVQR	GlyGly (K)	1978.0484	0.048353761	1288	sp|Q14254|FLOT2_HUMAN	yes	yes	0	0	1	0	1	1	1				1	1			35.48	35.48	3	9.9716E-06	9396	20190902_JH_MUT_Ubi_2	119	72.107	16187000	4838600	2608000	0	0	0	4411600	4328400	0	0			5408	1288	4765	15282;15283;15284;15285	16053;16054;16055;16056	16055		1348		4
VEADGSLSSMQGDLK	Oxidation (M)	1551.7087	0.70865195	1573	sp|Q8IVF2|AHNK2_HUMAN;sp|Q8IVF2-3|AHNK2_HUMAN	yes	no	0	0	0	1	0			1							37.639	37.639	2	0.017652	8972	20190821_JH_WT_Ubi	61.213	20.104	3221500	0	0	3221500	0	0	0	0	0	0			5409	1573	4766	15286	16057	16057			930	0
VEAIPNCKSEEETSPLVTHQNPAGPVASAPELESK	GlyGly (K)	3828.8476	0.84761163	837	sp|P43007|SATT_HUMAN;sp|P43007-2|SATT_HUMAN	yes	no	0	0	1	0	1	1	1		1					1	34.736	34.736	4	0.0014646	8351	20190821_JH_EV_Ubi	48.831	29.831	39155000	14340000	12191000	0	10132000	0	0	0	0	2492100			5410	837	4767	15287;15288;15289;15290	16058;16059;16060;16061;16062	16059		808;810		5
VEAVNMAEGIIHDTETK	Unmodified	1855.8986	0.89857798	802	sp|P38646|GRP75_HUMAN	yes	yes	0	0	0	0	0			1							38.743	38.743	3	0.012191	9433	20190821_JH_WT_Ubi	57.788	28.447	3350100	0	0	3350100	0	0	0	0	0	0			5411	802	4768	15291	16063	16063				1
VECFPLGLLIEPR	Unmodified	1541.8276	0.82758529	39		yes	yes	0	0	0	0	0									1	42.693	42.693	3	0.011819	12415	20190902_JH_WT_Ubi_3	70.089	28.059	1445200	0	0	0	0	0	0	0	0	1445200	+		5412	39	4769	15292	16064	16064				1
VECGPKYPEAPPSVR	GlyGly (K)	1798.8672	0.86721827	1366	sp|Q15819|UB2V2_HUMAN	yes	yes	0	0	1	0	1								1		27.407	27.407	3	0.023713	7452	20190902_JH_WT_Ubi_2	58.079	20.715	3389900	0	0	0	0	0	0	0	3389900	0			5413	1366	4770	15293	16065	16065		1408		1
VECYDYDNDGSHDLIGTFQTTMTK	Oxidation (M)	2825.1796	0.1796398	270	sp|O75131|CPNE3_HUMAN	yes	yes	0	0	0	1	0								1		38.605	38.605	3	0.024962	11374	20190902_JH_WT_Ubi_2	41.703	26.388	1323900	0	0	0	0	0	0	0	1323900	0			5414	270	4771	15294	16066	16066			119	1
VEEEDGKTATQPLLK	GlyGly (K)	1770.9	0.89995819	970	sp|P55011|S12A2_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	26.192	26.192	3	1.766E-07	5686	20190902_JH_MUT_Ubi_3	136.14	61.149	53161000	6099800	4927700	3573600	7915500	10503000	6159900	5993400	4812800	3175000			5415	970	4772	15295;15296;15297;15298;15299;15300;15301;15302;15303	16067;16068;16069;16070;16071;16072;16073;16074;16075	16072		948		9
VEEEIQTLSQVLAAKEK	GlyGly (K)	2028.0739	0.07389981	982	sp|P55327-8|TPD52_HUMAN;sp|P55327-2|TPD52_HUMAN;sp|P55327-4|TPD52_HUMAN;sp|P55327|TPD52_HUMAN;sp|P55327-7|TPD52_HUMAN;sp|P55327-5|TPD52_HUMAN;sp|P55327-6|TPD52_HUMAN;sp|P55327-3|TPD52_HUMAN	yes	no	0	0	1	0	1			1					1	1	41.018	41.018	3	4.9703E-10	10319	20190821_JH_WT_Ubi	137.79	90.75	19467000	0	0	11293000	0	0	0	0	3507200	4666200			5416	982	4773	15304;15305;15306	16076;16077;16078	16076		967;968		3
VEEQEPELTSTPNFVVEVIK	Unmodified	2286.1631	0.16310875	1172	sp|Q07021|C1QBP_HUMAN	yes	yes	0	0	0	0	0			1			1		1		48.678	48.678	2;3	1.0711E-06	14680	20190902_JH_WT_Ubi_2	114.9	81.206	5812600	0	0	3407700	0	0	0	0	2404900	0			5417	1172	4774	15307;15308;15309	16079;16080;16081	16081				3
VEGAVSLLVGGQVGTETLVTHGKGGPAHSEGPGPP	GlyGly (K)	3404.7324	0.73244594	2226	sp|Q9Y3P4|RHBD3_HUMAN	yes	yes	0	0	1	0	1		1	1			1				39.212	39.212	4	0.00022726	9639	20190821_JH_WT_Ubi	55.819	31.207	17929000	0	4536100	9518200	0	0	3874800	0	0	0			5418	2226	4775	15310;15311;15312	16082;16083;16084	16084		2072		3
VEGDLKGPEADIK	GlyGly (K)	1483.7518	0.75183739	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1				1				25.981	25.981	3	0.026085	5913	20190902_JH_MUT_Ubi_2	62.088	17.545	3128100	0	1088500	0	0	0	2039600	0	0	0			5419	1190	4776	15313;15314	16085;16086	16086		1246		2
VEGDLKGPEIDIK	GlyGly (K)	1525.7988	0.79878758	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								31.652	31.652	3	0.034646	6463	20190821_JH_MUT_Ubi	61.11	20.614	0	0	0	0	0	0	0	0	0	0			5420	1190	4777	15315	16087	16087				1
VEGDLKGPEVDIR	GlyGly (K)	1539.7893	0.78928553	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1		1			1					29.728	29.728	3	0.032653	6741	20190902_JH_EV_Ubi_3	58.098	21.154	2179700	0	859440	0	0	1320300	0	0	0	0			5421	1190	4778	15316;15317	16088;16089	16088				1
VEGDTCSLNEFTITGSTYAPIGEVHK	Unmodified	2824.3225	0.32253929	591	sp|P16615-5|AT2A2_HUMAN;sp|P16615-2|AT2A2_HUMAN;sp|P16615-3|AT2A2_HUMAN;sp|P16615-4|AT2A2_HUMAN;sp|P16615|AT2A2_HUMAN	yes	no	0	0	0	0	0			1					1	1	42.793	42.793	3	5.0503E-10	12857	20190902_JH_WT_Ubi_2	100.94	81.253	8915200	0	0	4516000	0	0	0	0	2329600	2069600			5422	591	4779	15318;15319;15320	16090;16091;16092	16091				3
VEGEIKAPDVDIK	GlyGly (K)	1525.7988	0.79878758	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1				1	1	1	1	1		30.372	30.372	3	0.0018535	7449	20190902_JH_MUT_Ubi_2	102.73	42.333	9625700	0	0	0	2071200	1507700	2236000	2242300	1568500	0			5423	1190	4780	15321;15322;15323;15324;15325	16093;16094;16095;16096;16097	16095		1247		5
VEGEMKVPDVDIK	Oxidation (M);GlyGly (K)	1587.7814	0.78142296	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	1	1	1	1		1		1				28.486	28.486	3	0.0056834	6704	20190902_JH_MUT_Ubi_2	88.552	31.378	13103000	2992900	2042900	0	4074500	0	3992400	0	0	0			5424	1190	4781	15326;15327;15328;15329	16098;16099;16100;16101	16101		1248	753	4
VEGEMKVPDVDIK	GlyGly (K)	1571.7865	0.78650834	1190	sp|Q09666|AHNK_HUMAN	yes	no	0	0	1	0	1		1				1				32.473	32.473	3	0.024709	8229	20190902_JH_MUT_Ubi_2	62.924	18.308	1366900	0	0	0	0	0	1366900	0	0	0			5425	1190	4781	15330;15331	16102;16103	16103		1248		2
VEGEMKVPDVEIK	Oxidation (M);GlyGly (K)	1601.7971	0.79707302	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	1	1	1	1		1	1					28.661	28.661	3	0.018615	6412	20190902_JH_EV_Ubi_3	71.607	31.494	16996000	3851100	1672500	0	5454200	6017900	0	0	0	0			5426	1190	4782	15332;15333;15334;15335	16104;16105;16106;16107	16106		1249	754	4
VEGFPTIYFAPSGDK	Unmodified	1626.793	0.79297392	546	sp|P13667|PDIA4_HUMAN	yes	yes	0	0	0	0	0			1							46.356	46.356	2	0.034042	12537	20190821_JH_WT_Ubi	54.023	16.055	7015200	0	0	7015200	0	0	0	0	0	0			5427	546	4783	15336	16108	16108				0
VEGGVKGGQIGLQAPGLSVSGPQGHLESGSGK	GlyGly (K)	3100.5901	0.5901388	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1				1				34.01	34.01	4	1.9371E-05	8674	20190902_JH_MUT_Ubi_2	73.389	48.745	34288000	13903000	9540300	0	0	0	10844000	0	0	0			5428	1190	4784	15337;15338;15339	16109;16110;16111	16111		1250		3
VEGSFAQPPLNAPK	GlyGly (K);Deamidation (NQ)	1568.7835	0.78347187	160	sp|O14924-5|RGS12_HUMAN;sp|O14924-4|RGS12_HUMAN;sp|O14924|RGS12_HUMAN	yes	no	0	1	1	0	0		1	1		1			1		24.244	24.244	3;4	0.0053558	5077	20190902_JH_EV_Ubi_3	98.407	25.876	148750000	0	14693000	39880000	0	33788000	0	0	60389000	0			5429	160	4785	15340;15341;15342;15343	16112;16113;16114;16115	16112	59	133		4
VEGTEPTTAFNLFVGNLNFNK	Unmodified	2311.1485	0.14846174	618	sp|P19338|NUCL_HUMAN	yes	yes	0	0	0	0	0			2			1	1		1	53.423	53.423	2;3	2.1194E-244	15181	20190821_JH_WT_Ubi	318.7	247.61	20870000	0	0	17028000	0	0	530460	435870	0	2875500			5430	618	4786	15344;15345;15346;15347;15348	16116;16117;16118;16119;16120;16121	16118				6
VEGTLKGPEVDLK	GlyGly (K)	1497.8039	0.80387296	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1				29.155	29.155	3	0.00052821	6623	20190902_JH_EV_Ubi_2	112.5	49.207	15826000	3766200	2045800	0	3225100	3245400	3543500	0	0	0			5431	1190	4787	15349;15350;15351;15352;15353	16122;16123;16124;16125;16126	16123		1251		5
VEHSDLSFSK	Unmodified	1147.551	0.55095274	1028	sp|P61769|B2MG_HUMAN	yes	yes	0	0	0	0	0			1							23.177	23.177	3	0.007194	4370	20190821_JH_WT_Ubi	91.658	29.967	1067500	0	0	1067500	0	0	0	0	0	0			5432	1028	4788	15354	16127	16127				1
VEIAGPGFINVHLR	Unmodified	1520.8463	0.8463469	958	sp|P54136-2|SYRC_HUMAN;sp|P54136|SYRC_HUMAN	yes	no	0	0	0	0	0		1				1	1			39.929	39.929	3	0.0074054	10199	20190902_JH_MUT_Ubi_3	72.937	31.82	7612600	0	3250400	0	0	0	2356600	2005700	0	0			5433	958	4789	15355;15356;15357	16128;16129;16130	16130				3
VEILANDQGNR	Unmodified	1227.6208	0.62076364	596	sp|P48741|HSP77_HUMAN;sp|P17066|HSP76_HUMAN	yes	no	0	0	0	0	0							1	1		26.18	26.18	2	0.00089456	7117	20190902_JH_WT_Ubi_2	149.33	0	10816000	0	0	0	0	0	0	1662300	9154200	0			5434	596	4790	15358;15359	16131;16132	16132				1
VELEAKVDALNDEINFLR	GlyGly (K)	2201.1328	0.13281167	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	1	1		1							46.864	46.864	3	2.3117E-10	12740	20190821_JH_WT_Ubi	135.09	95.571	13234000	1630900	0	11603000	0	0	0	0	0	0		+	5435	8;19	4791	15360;15361	16133;16134	16134		32		2
VELQAKADTLTDEINFLR	GlyGly (K)	2189.1328	0.13281167	3	sp|P02538|K2C6A_HUMAN;CON__P02538;sp|P48668|K2C6C_HUMAN;CON__P48668;CON__P04259;sp|P04259|K2C6B_HUMAN	yes	no	0	0	1	0	1	1		1							44.624	44.624	3	2.5918E-05	11859	20190821_JH_WT_Ubi	115.53	70.72	7820000	1294100	0	6525900	0	0	0	0	0	0		+	5436	3	4792	15362;15363	16135;16136	16136		9		1
VELSDVQNPAISITENVLHFK	Unmodified	2352.2325	0.23252572	2081	sp|Q9P035-2|HACD3_HUMAN;sp|Q9P035|HACD3_HUMAN	yes	no	0	0	0	0	0	1		1							50.927	50.927	3	0.0019742	14287	20190821_JH_WT_Ubi	66.644	32.808	5154800	858560	0	4296200	0	0	0	0	0	0			5437	2081	4793	15364;15365	16137;16138	16138				2
VENFEAYFKK	GlyGly (K)	1387.6772	0.67721588	1203	sp|Q12913|PTPRJ_HUMAN	yes	yes	0	0	1	0	1			1			1	1	1	1	32.954	32.954	3	0.0034478	9555	20190902_JH_WT_Ubi_2	107.55	65.865	29387000	0	0	7226800	0	0	2389900	2368400	8802300	8599700			5438	1203	4794	15366;15367;15368;15369;15370	16139;16140;16141;16142;16143	16142		1268;1270		4
VENLVDQLNK	GlyGly (K);Deamidation (NQ)	1285.6514	0.65139506	1359	sp|Q15643|TRIPB_HUMAN	yes	yes	0	1	1	0	0			1							40.825	40.825	2	0.031149	10160	20190821_JH_WT_Ubi	58.815	9.7183	8406500	0	0	8406500	0	0	0	0	0	0			5439	1359	4795	15371	16144	16144	432			0
VEPITKHIGLVYSGMGPDYR	Oxidation (M);GlyGly (K)	2361.1787	0.17871601	682	sp|P25787|PSA2_HUMAN	yes	yes	0	0	1	1	1		1	1		1	1	1	2	1	33.669	33.669	3;4	4.0096E-05	9753	20190902_JH_WT_Ubi_2	102.47	68.8	110800000	0	1189400	27395000	0	3390000	10515000	9255500	30557000	28503000			5440	682	4796	15372;15373;15374;15375;15376;15377;15378;15379	16145;16146;16147;16148;16149;16150;16151;16152	16151		667	421	8
VEPITKHIGLVYSGMGPDYR	GlyGly (K)	2345.1838	0.18380139	682	sp|P25787|PSA2_HUMAN	yes	yes	0	0	1	0	1		1	1			1				36.283	36.283	4	0.010443	9614	20190902_JH_MUT_Ubi_2	55.094	31.412	24063000	0	3927200	15797000	0	0	4338800	0	0	0			5441	682	4796	15380;15381;15382	16153;16154;16155	16154		667		3
VEPWKEQFFESYYGQSSGLSLEDSK	GlyGly (K)	3053.3931	0.3930617	1516	sp|Q76L83-2|ASXL2_HUMAN;sp|Q76L83|ASXL2_HUMAN	yes	no	0	0	1	0	1		1						1		45.621	45.621	3	2.683E-08	11760	20190821_JH_MUT_Ubi	99.078	70.489	3654700	0	1111200	0	0	0	0	0	2543600	0			5442	1516	4797	15383;15384	16156;16157	16156		1513		2
VEQIAAIAQELNELDYYDSHNVNTR	Unmodified	2904.389	0.38897937	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN	yes	no	0	0	0	0	0	1		1		1	1		1	1	48.53	48.53	3	2.1046E-15	14675	20190902_JH_WT_Ubi_2	125.78	99.414	37746000	3648500	0	18688000	0	1180400	587140	0	7126900	6515400			5443	214	4798	15385;15386;15387;15388;15389;15390	16158;16159;16160;16161;16162;16163;16164	16162				7
VEQLQQEYTEMK	Oxidation (M)	1540.7079	0.70792366	1290	sp|Q14258|TRI25_HUMAN	yes	yes	0	0	0	1	0								1		26.998	26.998	2	6.4292E-17	7307	20190902_JH_WT_Ubi_2	153.95	74.04	0	0	0	0	0	0	0	0	0	0			5444	1290	4799	15391	16165	16165			804	1
VESDLKGPEVDIEGPEGK	GlyGly (K)	2010.9746	0.9745797	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1				1	1			32.222	32.222	3	1.1606E-14	8081	20190902_JH_MUT_Ubi_2	150.92	111.29	5386400	0	1144100	0	0	0	1940600	2301700	0	0			5445	1190	4800	15392;15393;15394	16166;16167;16168	16167		1252		3
VESEIKVPDVELK	GlyGly (K)	1597.8563	0.85630246	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			35.05	35.05	3	0.000378	8512	20190821_JH_EV_Ubi	116.71	73.737	26299000	3897400	2729500	0	4339700	4172300	5194600	5965200	0	0			5446	1190	4801	15395;15396;15397;15398;15399;15400	16169;16170;16171;16172;16173;16174	16169		1253		6
VETFSGVYK	Unmodified	1028.5179	0.51786169	1036	sp|P62081|RS7_HUMAN	yes	yes	0	0	0	0	0								1		29.966	29.966	2	0.022132	8338	20190902_JH_WT_Ubi_2	77.282	11.209	2807400	0	0	0	0	0	0	0	2807400	0			5447	1036	4802	15401	16175	16175				1
VETGILRPGMVVTFAPVNITTEVK	Oxidation (M)	2586.4091	0.40910987	1160	sp|Q05639|EF1A2_HUMAN	yes	yes	0	0	0	1	1	1	1		1	1	1	1			45.191	45.191	3	1.0193E-11	11392	20190902_JH_EV_Ubi_3	123.36	90.369	61096000	17269000	11921000	0	4247200	4204900	10188000	13266000	0	0			5448	1160	4803	15402;15403;15404;15405;15406;15407	16176;16177;16178;16179;16180;16181;16182	16178			724	7
VETGILRPGMVVTFAPVNITTEVK	Unmodified	2570.4142	0.41419525	1160	sp|Q05639|EF1A2_HUMAN	yes	yes	0	0	0	0	1	1	1			1	1	1			47.722	47.722	3	3.1034E-12	13062	20190821_JH_EV_Ubi	132.66	112.4	47844000	11276000	19757000	0	0	1226400	7310300	8273800	0	0			5449	1160	4803	15408;15409;15410;15411;15412	16183;16184;16185;16186;16187	16183				5
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	1	1	1	1	1	1	1	1	1			42.36	42.36	3	6.7145E-09	10604	20190902_JH_EV_Ubi_3	111.25	81.862	162810000	46605000	13684000	5186100	28340000	46136000	11493000	11368000	0	0			5450	1096	4804	15413;15414;15415;15416;15417;15418;15419	16188;16189;16190;16191;16192;16193;16194;16195	16191			679	8
VETGVLKPGMVVTFAPVNVTTEVK	Unmodified	2514.3767	0.37674711	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	0	1	1	1	1	1	1	1	1			44.807	44.807	3	5.9642E-09	11296	20190902_JH_EV_Ubi_3	115.83	85.18	89371000	32104000	14565000	0	10266000	10394000	14209000	7833500	0	0			5451	1096	4804	15420;15421;15422;15423;15424;15425;15426	16196;16197;16198;16199;16200;16201;16202	16198				7
VETSDEEIHDLHQR	Unmodified	1706.786	0.78599106	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	0	0			1							22.345	22.345	3	0.034961	4187	20190821_JH_WT_Ubi	46.159	13.543	1429100	0	0	1429100	0	0	0	0	0	0			5452	441	4805	15427	16203	16203				1
VEYPIMYSTDPENGHIFNCIQR	Oxidation (M);Deamidation (NQ)	2699.1996	0.19958738	158	sp|O14880|MGST3_HUMAN	yes	yes	0	1	0	1	0								1		42.237	42.237	3	0.017076	12596	20190902_JH_WT_Ubi_2	57.41	36.753	3132900	0	0	0	0	0	0	0	3132900	0			5453	158	4806	15428	16204	16204	58		68	1
VEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSR	Unmodified	4295.9481	0.94811353	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0			1						1	48.268	48.268	3	0.001018	13393	20190821_JH_WT_Ubi	46.245	32.604	14677000	0	0	11598000	0	0	0	0	0	3079200			5454	637	4807	15429;15430	16205;16206;16207	16205				3
VFAENKEIQK	GlyGly (K)	1318.6881	0.68811492	367	sp|O95994|AGR2_HUMAN	yes	yes	0	0	1	0	1		1								21.81	21.81	3	0.018495	3380	20190821_JH_MUT_Ubi	76.943	22.746	1244600	0	1244600	0	0	0	0	0	0	0			5455	367	4808	15431	16208	16208		330		1
VFANPEDCVAFGKGENAK	GlyGly (K)	2065.9527	0.95273882	512	sp|P10620|MGST1_HUMAN;sp|P10620-2|MGST1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	31.842	31.842	3	6.3382E-06	6931	20190821_JH_WT_Ubi	115.2	75.112	135830000	4852400	5232400	23126000	6753700	4004100	7996400	8986300	37279000	37598000			5456	512	4809	15432;15433;15434;15435;15436;15437;15438;15439;15440	16209;16210;16211;16212;16213;16214;16215;16216;16217;16218	16216		503;504		10
VFANPEDCVAFGKGENAK	GlyGly (K);Deamidation (NQ)	2066.9368	0.9367544	512	sp|P10620|MGST1_HUMAN;sp|P10620-2|MGST1_HUMAN	yes	no	0	1	1	0	1			1						1	33.334	33.334	3	0.0091128	9201	20190902_JH_WT_Ubi_3	91.592	58.904	6758200	0	0	3042200	0	0	0	0	0	3716000			5457	512	4809	15441;15442	16219;16220	16220	195	503;504		2
VFANPEDCVAFGKGENAKK	2 GlyGly (K)	2308.0906	0.090629281	512	sp|P10620|MGST1_HUMAN;sp|P10620-2|MGST1_HUMAN	yes	no	0	0	2	0	2								1	1	28.571	28.571	4	0.00036822	7491	20190902_JH_WT_Ubi_3	98.281	73.114	17622000	0	0	0	0	0	0	0	7011500	10610000			5458	512	4810	15443;15444	16221;16222	16222		503;504;505		2
VFDFELSSQDMTTLLSYNR	Oxidation (M)	2281.0573	0.057263468	563	sp|P15121|ALDR_HUMAN	yes	yes	0	0	0	1	0			1					1	1	49.68	49.68	3	4.2964E-05	13854	20190821_JH_WT_Ubi	104.78	74.291	6954800	0	0	3410300	0	0	0	0	1366000	2178500			5459	563	4811	15445;15446;15447	16223;16224;16225	16223			353	3
VFDKDGNGYISAAELR	GlyGly (K)	1867.9064	0.90644055	504	sp|P0DP25|CALM3_HUMAN;sp|P0DP24|CALM2_HUMAN;sp|P0DP23|CALM1_HUMAN	yes	no	0	0	1	0	1							1			33.975	33.975	3	0.029553	8378	20190902_JH_MUT_Ubi_3	59.634	14.427	827940	0	0	0	0	0	0	827940	0	0			5460	504	4812	15448	16226	16226		496		0
VFELMTSLHTK	Oxidation (M)	1320.6748	0.67477304	1167	sp|Q06323-3|PSME1_HUMAN;sp|Q06323|PSME1_HUMAN;sp|Q06323-2|PSME1_HUMAN	yes	no	0	0	0	1	0		1								31.384	31.384	3	0.036737	6380	20190821_JH_MUT_Ubi	57.348	15.138	1298500	0	1298500	0	0	0	0	0	0	0			5461	1167	4813	15449	16227	16227				1
VFELMTSLHTK	Unmodified	1304.6799	0.67985842	1167	sp|Q06323-3|PSME1_HUMAN;sp|Q06323|PSME1_HUMAN;sp|Q06323-2|PSME1_HUMAN	yes	no	0	0	0	0	0			1			1				35.633	35.633	3	0.014752	9533	20190902_JH_MUT_Ubi_2	72.096	26.187	1122700	0	0	0	0	0	1122700	0	0	0			5462	1167	4813	15450;15451	16228;16229	16228				2
VFHLLGVDTLVVTNAAGGLNPK	Unmodified	2234.2423	0.24230254	379	sp|P00491|PNPH_HUMAN	yes	yes	0	0	0	0	0		1	1			1				47.165	47.165	3	8.3234E-12	12360	20190821_JH_MUT_Ubi	131.25	88.669	32573000	0	12974000	12068000	0	0	7531400	0	0	0			5463	379	4814	15452;15453;15454	16230;16231;16232	16230				3
VFHLQPCENSPTMSQNGYFEDSSYYKCDTDDTFEAR	Oxidation (M);GlyGly (K);Deamidation (NQ)	4468.8107	0.81071013	1635	sp|Q8NBS3-3|S4A11_HUMAN	yes	yes	0	1	1	1	1						1				39.291	39.291	4	0.00033905	10885	20190902_JH_MUT_Ubi_2	50.88	12.795	2431000	0	0	0	0	0	2431000	0	0	0			5464	1635	4815	15455	16233	16233	532	1637	950	1
VFIMDNCEELIPEYLNFIR	Oxidation (M)	2430.16	0.1599544	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	0	1	0								1		54.874	54.874	3	0.011588	16314	20190902_JH_WT_Ubi_2	56.906	13.498	1664100	0	0	0	0	0	0	0	1664100	0			5465	455	4816	15456	16234	16234			259	1
VFQSSANYAENFIQSIISTVEPAQR	Deamidation (NQ)	2799.3715	0.37153839	788	sp|P36871|PGM1_HUMAN	yes	yes	0	1	0	0	0								1		57.462	57.462	3	0.0049726	16743	20190902_JH_WT_Ubi_2	70.994	39.373	0	0	0	0	0	0	0	0	0	0			5466	788	4817	15457	16235	16235	909			1
VFQVEYAMKAVENSSTAIGIR	GlyGly (K)	2426.2264	0.22639448	683	sp|P25788-2|PSA3_HUMAN;sp|P25788|PSA3_HUMAN	yes	no	0	0	1	0	1		1								46.888	46.888	3	0.018352	12169	20190821_JH_MUT_Ubi	50.098	21.518	1508200	0	1508200	0	0	0	0	0	0	0			5467	683	4818	15458	16236	16236		668		1
VFTASPASIAATSFSEDTLKK	GlyGly (K)	2284.1587	0.15869207	2173	sp|Q9UMD9-2|COHA1_HUMAN;sp|Q9UMD9|COHA1_HUMAN	yes	no	0	0	1	0	1			1					1	1	40.011	40.011	3	2.5813E-08	9958	20190821_JH_WT_Ubi	115.91	87.271	23385000	0	0	9558800	0	0	0	0	5795300	8030900			5468	2173	4819	15459;15460;15461	16237;16238;16239	16237		2028;2029		3
VFVTPQAPLEAIQAYLAGHYR	Unmodified	2343.2376	0.23755152	1458	sp|Q63HN8|RN213_HUMAN;sp|Q63HN8-4|RN213_HUMAN	yes	no	0	0	0	0	0			1							53.524	53.524	3	0.013836	15252	20190821_JH_WT_Ubi	49.606	27.595	2066400	0	0	2066400	0	0	0	0	0	0			5469	1458	4820	15462	16240	16240				1
VGDAIPAVEVFEGEPGNK	Unmodified	1826.905	0.90504357	723	sp|P30044-2|PRDX5_HUMAN;sp|P30044|PRDX5_HUMAN;sp|P30044-3|PRDX5_HUMAN	yes	no	0	0	0	0	0								1	1	44.17	44.17	3	0.0015853	13323	20190902_JH_WT_Ubi_2	74.428	38.037	5298600	0	0	0	0	0	0	0	2429300	2869300			5470	723	4821	15463;15464	16241;16242	16241				2
VGEAGLLSVDCSEAGPGALGLEAVSDSGTK	Unmodified	2845.3651	0.36513239	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1							47.696	47.696	3	2.7263E-07	13093	20190821_JH_WT_Ubi	117	86.348	0	0	0	0	0	0	0	0	0	0			5471	282	4822	15465	16243	16243				1
VGEEFEEQTVDGRPCKSLVK	GlyGly (K)	2420.1642	0.16418815	714	sp|P29373|RABP2_HUMAN	yes	yes	0	0	1	0	2			1							29.589	29.589	4	0.025331	6205	20190821_JH_WT_Ubi	44.662	11.866	6148800	0	0	6148800	0	0	0	0	0	0			5472	714	4823	15466	16244	16244		694		1
VGEMGLEIKLLKLEQK	Oxidation (M)	1843.0489	0.048871033	33		yes	no	0	0	0	1	2			1						1	44.006	44.006	4	0.02431	11688	20190821_JH_WT_Ubi	46.964	15.137	43036000	0	0	31908000	0	0	0	0	0	11129000	+		5473	33	4824	15467;15468	16245;16246	16245			29	2
VGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTR	Unmodified	3695.8067	0.80673309	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0			1				1	1	1	51.379	51.379	3	2.1484E-26	14512	20190821_JH_WT_Ubi	129.6	85.608	6612100	0	0	3942800	0	0	0	408280	1323500	937560			5474	282	4825	15469;15470;15471;15472	16247;16248;16249;16250;16251	16249				5
VGEQAQVVIIDMNDPSNPIR	Oxidation (M);Deamidation (NQ)	2211.0841	0.08414692	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	1	0	1	0					1					40.081	40.081	3	0.035217	10064	20190902_JH_EV_Ubi_3	41.513	14.364	0	0	0	0	0	0	0	0	0	0			5475	1123	4826	15473	16252	16252	984			1
VGFYVNTFQSIAGLEENFHK	Unmodified	2299.1273	0.12733236	131	sp|O00499-9|BIN1_HUMAN;sp|O00499-10|BIN1_HUMAN;sp|O00499-7|BIN1_HUMAN;sp|O00499-8|BIN1_HUMAN;sp|O00499-4|BIN1_HUMAN;sp|O00499-6|BIN1_HUMAN;sp|O00499-11|BIN1_HUMAN;sp|O00499-3|BIN1_HUMAN;sp|O00499-2|BIN1_HUMAN;sp|O00499-5|BIN1_HUMAN;sp|O00499|BIN1_HUMAN	yes	no	0	0	0	0	0								1		48.708	48.708	3	0.013911	14659	20190902_JH_WT_Ubi_2	50.392	17.411	2839400	0	0	0	0	0	0	0	2839400	0			5476	131	4827	15474	16253	16253				1
VGGSGVNVNAKGLDLGGR	GlyGly (K)	1782.9337	0.93365835	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1	1			30.549	30.549	3	1.251E-08	7569	20190902_JH_MUT_Ubi_2	130.47	96.703	13897000	0	0	0	0	0	8156600	5740100	0	0			5477	1190	4828	15475;15476	16254;16255	16254		1254		2
VGIDTPDIDIHGPEGK	Unmodified	1661.8261	0.82606496	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1	1					1	35.584	35.584	3	0.000377	9991	20190902_JH_WT_Ubi_3	98.942	71.279	12075000	0	0	5355400	1006300	0	0	0	0	5713700			5478	1190	4829	15477;15478;15479	16256;16257;16258	16258				3
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	0	0	0	1		1	1	1	1		1	1	41.259	41.259	2;3	4.1855E-07	10714	20190821_JH_EV_Ubi	121.56	75.206	195000000	47396000	0	125170000	2633800	3807400	1654500	0	5809200	8529000			5479	1097;1098;1515;1858	4830	15480;15481;15482;15483;15484;15485;15486	16259;16260;16261;16262;16263;16264;16265	16259				5
VGINYQPPTVVPGGDLAKVQR	GlyGly (K)	2321.2492	0.24917883	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	38.464	38.464	3	8.3387E-16	11399	20190902_JH_WT_Ubi_2	141.93	112.25	404550000	41042000	33228000	72051000	20278000	33453000	56995000	56905000	51868000	38732000			5480	1097;1098;1515;1858	4831	15487;15488;15489;15490;15491;15492;15493;15494;15495	16266;16267;16268;16269;16270;16271;16272;16273;16274;16275	16274		1099		10
VGINYQPPTVVPGGDLAKVQR	GlyGly (K);Deamidation (NQ)	2322.2332	0.23319442	1097;1515;1858;1098	sp|P68363|TBA1B_HUMAN;sp|P68363-2|TBA1B_HUMAN;sp|P68366-2|TBA4A_HUMAN;sp|P68366|TBA4A_HUMAN;sp|Q71U36|TBA1A_HUMAN;sp|Q71U36-2|TBA1A_HUMAN;sp|Q13748|TBA3C_HUMAN;sp|Q13748-2|TBA3C_HUMAN;sp|Q6PEY2|TBA3E_HUMAN;sp|Q9BQE3|TBA1C_HUMAN;sp|Q9NY65-2|TBA8_HUMAN;sp|Q9NY65|TBA8_HUMAN	no	no	0	1	1	0	1								1		39.517	39.517	3	0.015379	11659	20190902_JH_WT_Ubi_2	67.43	42.638	3087200	0	0	0	0	0	0	0	3087200	0			5481	1097;1098;1515;1858	4831	15496	16276	16276	975	1099		1
VGLNFSPGQSFPASQAHLR	Unmodified	2012.0228	0.022807713	0	CON__ENSEMBL:ENSBTAP00000024146	yes	yes	0	0	0	0	0			1					1	1	37.835	37.835	3	1.7188E-13	10669	20190902_JH_WT_Ubi_3	140.68	95.059	89773000	0	0	39111000	0	0	0	0	20324000	30337000		+	5482	0	4832	15497;15498;15499	16277;16278;16279	16279				3
VGNVEYFGLGNSPGFPLQYYPYYGK	Unmodified	2828.3486	0.34861811	419	sp|P05026-2|AT1B1_HUMAN;sp|P05026|AT1B1_HUMAN	yes	no	0	0	0	0	0								1		53.578	53.578	3	3.2179E-12	15959	20190902_JH_WT_Ubi_2	113.7	84.571	12543000	0	0	0	0	0	0	0	12543000	0			5483	419	4833	15500	16280	16280				1
VGPEPTTDCFVAVMHGDTEGTVPGNALVVDPDK	Unmodified	3423.5963	0.59627131	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	0	0	0			1							46.317	46.317	3	4.9575E-07	12544	20190821_JH_WT_Ubi	78.757	56.676	3801200	0	0	3801200	0	0	0	0	0	0			5484	2074	4834	15501	16281	16281				1
VGPEPTTDCFVAVMHGDTEGTVPGNALVVDPDK	Oxidation (M)	3439.5912	0.59118593	2074	sp|Q9NZN4|EHD2_HUMAN	yes	yes	0	0	0	1	0								1		42.456	42.456	3	0.0067924	12674	20190902_JH_WT_Ubi_2	42.319	26.178	2721500	0	0	0	0	0	0	0	2721500	0			5485	2074	4834	15502	16282	16282			1108	1
VGQGYPHDPPKVK	GlyGly (K)	1534.7892	0.78922595	1011	sp|P61081|UBC12_HUMAN	yes	yes	0	0	1	0	1								1		20.749	20.749	4	0.0093731	5199	20190902_JH_WT_Ubi_2	74.237	47.878	9218500	0	0	0	0	0	0	0	9218500	0			5486	1011	4835	15503	16283	16283		1000		1
VGQSMNMGSDFDVFAHITNNTAEEYVCR	2 Oxidation (M)	3223.3645	0.36449723	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	2	0	1	1	1	1	1			1	1	43.919	43.919	3	1.2324E-25	13245	20190902_JH_WT_Ubi_2	141	121.62	101150000	5421100	2815700	38429000	603850	1458600	0	0	24506000	27921000			5487	645	4836	15504;15505;15506;15507;15508;15509;15510	16284;16285;16286;16287;16288;16289;16290;16291	16290			396;397	8
VGQSMNMGSDFDVFAHITNNTAEEYVCR	Oxidation (M)	3207.3696	0.36958261	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	1	0	1		1						2	45.176	45.176	3	9.1349E-16	12017	20190821_JH_WT_Ubi	111.84	91.179	12886000	0	0	6069700	0	0	0	0	0	6815900			5488	645	4836	15511;15512;15513;15514	16292;16293;16294;16295;16296	16293			396;397	5
VGQSMNMGSDFDVFAHITNNTAEEYVCR	Unmodified	3191.3747	0.37466799	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	0		1	1					1		47.75	47.75	3	3.1773E-05	13051	20190821_JH_WT_Ubi	80.191	68.667	18429000	0	1433800	16214000	0	0	0	0	781000	0			5489	645	4836	15515;15516;15517	16297;16298;16299;16300	16299				4
VGQSMNMGSDFDVFAHITNNTAEEYVCR	2 Oxidation (M);Deamidation (NQ)	3224.3485	0.34851282	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	1	0	2	0								1	1	44.602	44.602	3	1.886E-16	13433	20190902_JH_WT_Ubi_2	120.38	106.98	8235300	0	0	0	0	0	0	0	5263100	2972200			5490	645	4836	15518;15519	16301;16302	16301	230		396;397	2
VGSAADIPINISETDLSLLTATVVPPSGR	Unmodified	2892.5444	0.54441738	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1		1	1				1	1	55.757	55.757	3	3.6575E-16	15855	20190902_JH_WT_Ubi_3	115.83	93.129	35087000	3743300	0	19284000	799400	0	0	0	5202800	6057500			5491	637	4837	15520;15521;15522;15523;15524	16303;16304;16305;16306;16307	16307				5
VGSFQLFVEGYKDADYWLR	GlyGly (K)	2406.1644	0.16444615	1875	sp|Q9BTU6|P4K2A_HUMAN	yes	yes	0	0	1	0	1								1		51.38	51.38	3	0.011337	15375	20190902_JH_WT_Ubi_2	58.712	30.629	1906700	0	0	0	0	0	0	0	1906700	0			5492	1875	4838	15525	16308	16308		1820		1
VGSHITGGDIYGIVSENSLIK	Deamidation (NQ)	2159.111	0.1110136	801	sp|P38606-2|VATA_HUMAN;sp|P38606|VATA_HUMAN	yes	no	0	1	0	0	0	1									42.497	42.497	3	0.006379	11142	20190821_JH_EV_Ubi	63.302	15.57	1839500	1839500	0	0	0	0	0	0	0	0			5493	801	4839	15526	16309	16309	281			1
VGSLPLEKGSPVTTTK	2 GlyGly (K)	1840.9894	0.9894419	1525	sp|Q7Z2K8-2|GRIN1_HUMAN;sp|Q7Z2K8|GRIN1_HUMAN	yes	no	0	0	2	0	1	1									36.277	36.277	3	0.020168	8863	20190821_JH_EV_Ubi	71.531	22.198	4279300	4279300	0	0	0	0	0	0	0	0			5494	1525	4840	15527	16310	16310		1520;1521		1
VGSTENIKHQPGGGR	GlyGly (K)	1649.8234	0.82337962	703	sp|P27816-2|MAP4_HUMAN;sp|P27816-6|MAP4_HUMAN;sp|P27816|MAP4_HUMAN;sp|P27816-5|MAP4_HUMAN	yes	no	0	0	1	0	1						1				16.35	16.35	3	0.015289	3691	20190902_JH_MUT_Ubi_2	64.224	32.55	258260	0	0	0	0	0	258260	0	0	0			5495	703	4841	15528	16311	16311		687		1
VGVEVPDVNIEGPEGKLK	GlyGly (K)	1992.0528	0.052770437	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1			1		1	1			37.894	37.894	3	0.00019491	10323	20190902_JH_MUT_Ubi_2	97.823	70.056	12043000	3467800	0	0	2260500	0	2619400	3695100	0	0			5496	1190	4842	15529;15530;15531;15532	16312;16313;16314;16315	16314		1255;1256		4
VHAELADVLTEAVVDSILAIK	Unmodified	2205.2256	0.22564942	809	sp|P40227-2|TCPZ_HUMAN;sp|P40227|TCPZ_HUMAN	yes	no	0	0	0	0	0		1	1							57.419	57.419	3	0.0010578	16287	20190821_JH_WT_Ubi	71.637	46.026	1327800	0	669820	658010	0	0	0	0	0	0			5497	809	4843	15533;15534	16316;16317	16317				2
VHGAMELQVQTGK	Oxidation (M)	1412.7082	0.70819844	1967	sp|Q9H7M9|VISTA_HUMAN	yes	yes	0	0	0	1	0									1	21.576	21.576	3	0.00046092	5513	20190902_JH_WT_Ubi_3	112.44	45.842	2866000	0	0	0	0	0	0	0	0	2866000			5498	1967	4844	15535	16318	16318			1070	1
VHGPGIQSGTTNKPNK	Unmodified	1633.8536	0.85361712	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	1	1		1		1			1		16.556	16.556	3	0.001759	2984	20190821_JH_WT_Ubi	101.72	70.067	10774000	2709100	0	1905400	0	2096500	0	0	4063100	0			5499	637	4845	15536;15537;15538;15539	16319;16320;16321;16322	16321				4
VHKISNPWQSPSGTLPALR	GlyGly (K)	2201.1705	0.17053458	1247	sp|Q13505-3|MTX1_HUMAN;sp|Q13505-2|MTX1_HUMAN;sp|Q13505|MTX1_HUMAN	yes	no	0	0	1	0	1		1	1							34.071	34.071	3;4	0.00016798	7420	20190821_JH_MUT_Ubi	94.61	61.302	58188000	0	4274000	53914000	0	0	0	0	0	0			5500	1247	4846	15540;15541	16323;16324	16323		1318		2
VHLQFLGHPILNDPIYNSVAWGPSR	Unmodified	2829.4715	0.47146763	1596	sp|Q8IZ73-2|RUSD2_HUMAN;sp|Q8IZ73|RUSD2_HUMAN	yes	no	0	0	0	0	0			1							46.237	46.237	4	0.031414	12532	20190821_JH_WT_Ubi	31.27	12.06	2640100	0	0	2640100	0	0	0	0	0	0			5501	1596	4847	15542	16325	16325				1
VHNDAQSFDYDHDAFLGAEEAK	Unmodified	2478.0724	0.07239626	225	sp|O43852|CALU_HUMAN;sp|O43852-3|CALU_HUMAN;sp|O43852-2|CALU_HUMAN;sp|O43852-4|CALU_HUMAN;sp|O43852-5|CALU_HUMAN;sp|O43852-9|CALU_HUMAN;sp|O43852-10|CALU_HUMAN;sp|O43852-6|CALU_HUMAN;sp|O43852-13|CALU_HUMAN;sp|O43852-14|CALU_HUMAN;sp|O43852-11|CALU_HUMAN;sp|O43852-12|CALU_HUMAN;sp|O43852-7|CALU_HUMAN;sp|O43852-8|CALU_HUMAN	yes	no	0	0	0	0	0			1						1	33.62	33.62	4	0.00081036	9293	20190902_JH_WT_Ubi_3	70.986	41.814	21967000	0	0	9424000	0	0	0	0	0	12543000			5502	225	4848	15543;15544	16326;16327	16327				2
VHSPSGALEECYVTEIDQDK	Unmodified	2276.0267	0.026691621	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1		1	1	1			1	1	34.903	34.903	3	1.1561E-49	7962	20190821_JH_WT_Ubi	204.81	160.42	37881000	2092800	0	16407000	1070500	1130800	0	0	9013500	8166300			5503	637	4849	15545;15546;15547;15548;15549;15550	16328;16329;16330;16331;16332;16333	16331				6
VHSPSGAVEECHVSELEPDK	Unmodified	2205.0008	0.0008112211	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0			1					1		26.376	26.376	4	0.029319	7126	20190902_JH_WT_Ubi_2	37.171	18.386	10044000	0	0	4551400	0	0	0	0	5492400	0			5504	282	4850	15551;15552	16334;16335	16335				2
VHTQNLEVSHPECKAQMLENPSIQR	Oxidation (M);GlyGly (K);Deamidation (NQ)	3075.4502	0.4502162	1592	sp|Q8IYU4|UBQLN_HUMAN	yes	yes	0	1	1	1	1		1								51.668	51.668	3	0.032231	13686	20190821_JH_MUT_Ubi	51.503	12.628	2364400	0	2364400	0	0	0	0	0	0	0			5505	1592	4851	15553	16336	16336	518;1129		936	1
VHYENNSPFLTITSMTR	Oxidation (M)	2024.9626	0.96257522	413	sp|P04843|RPN1_HUMAN	yes	yes	0	0	0	1	0			1					1	1	35.65	35.65	3	3.2229E-05	9934	20190902_JH_WT_Ubi_3	110.84	73.189	6778000	0	0	2390400	0	0	0	0	1925900	2461700			5506	413	4852	15554;15555;15556	16337;16338;16339	16339			209	3
VIANPPKAEEEQTCPVPQEEEEEVR	GlyGly (K)	3020.4033	0.40330881	1751	sp|Q96A54|PAQR1_HUMAN	yes	yes	0	0	1	0	1	1	1								30.753	30.753	3	3.7641E-12	6665	20190821_JH_EV_Ubi	115.31	86.892	2222700	1715300	507450	0	0	0	0	0	0	0			5507	1751	4853	15557;15558	16340;16341;16342	16340		1738		3
VICAEEPYICKDFPETNNILK	GlyGly (K)	2666.272	0.27202404	900	sp|P49915-2|GUAA_HUMAN;sp|P49915|GUAA_HUMAN	yes	no	0	0	1	0	1	1		1				1			41.334	41.334	3	0.0018852	10688	20190902_JH_MUT_Ubi_3	70.114	35.849	6125300	2282300	0	2693300	0	0	0	1149700	0	0			5508	900	4854	15559;15560;15561	16343;16344;16345	16344		867		3
VIFVQNCPDTAKK	2 GlyGly (K);Deamidation (NQ)	1747.8563	0.85631924	1675	sp|Q8TCQ1-2|MARH1_HUMAN;sp|Q8TCQ1|MARH1_HUMAN	yes	no	0	1	2	0	1			1							35.664	35.664	3	0.027569	8243	20190821_JH_WT_Ubi	54.776	7.1694	9048100	0	0	9048100	0	0	0	0	0	0			5509	1675	4855	15562	16346	16346	547;1159	1670;1671		1
VIHDNFGIVEGLMTTVHAITATQK	Unmodified	2594.3527	0.35265763	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0	2	2	1		1	2	2	1	1	50.927	50.927	3;4	1.672E-30	14388	20190902_JH_MUT_Ubi_2	165	138.53	3944600000	85926000	2214300000	1175500000	0	2199400	103640000	65746000	64240000	233000000			5510	407	4856	15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574	16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361	16354				15
VIHDNFGIVEGLMTTVHAITATQK	Oxidation (M)	2610.3476	0.34757225	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	1	0		2	4	1	1	2	3	2	3	44.397	44.397	3;4	7.0517E-23	390	20190902_JH_MUT_Ubi_3	147.75	120.99	6292800000	0	1181600000	2078500000	62626000	135380000	1133500000	654350000	933220000	113570000			5511	407	4856	15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592	16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386	16373			202	24
VIHDNFGIVEGLMTTVHAITATQK	Oxidation (M);Deamidation (NQ)	2611.3316	0.33158783	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	1	0	1	0		1			1	1		2	2	47.466	47.466	3;4	3.1091E-46	13453	20190902_JH_WT_Ubi_3	185.3	160.41	254740000	0	1671600	0	0	4318500	0	0	91954000	156800000			5512	407	4856	15593;15594;15595;15596;15597;15598;15599	16387;16388;16389;16390;16391;16392;16393;16394	16393	143;820		202	7
VIHDNFGIVEGLMTTVHAITATQK	Deamidation (NQ)	2595.3367	0.33667321	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	1	0	0	0		1	1						1	53.474	53.474	3;4	3.4063E-22	14986	20190821_JH_MUT_Ubi	134.42	111.52	21113000	0	888540	3366300	0	0	0	0	0	16858000			5513	407	4856	15600;15601;15602	16395;16396;16397	16395	143;820			2
VIHDNFGIVEGLMTTVHAITATQKTVDGPSGK	Oxidation (M);GlyGly (K)	3465.7562	0.75621785	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	1	1	1			1							44.196	44.196	4	0.00069248	11703	20190821_JH_WT_Ubi	51.234	29.287	3317900	0	0	3317900	0	0	0	0	0	0			5514	407	4857	15603	16398	16398		374	202	1
VIHLSNLPHSGYSDSAVLK	Unmodified	2036.0691	0.069089203	841	sp|P43243|MATR3_HUMAN;sp|P43243-2|MATR3_HUMAN	yes	no	0	0	0	0	0	1	1	1		1			1	1	32.329	32.329	3;4	0.0008881	7070	20190821_JH_WT_Ubi	75.91	41.488	27748000	536650	1026500	7039700	0	1552300	0	0	11612000	5980600			5515	841	4858	15604;15605;15606;15607;15608;15609	16399;16400;16401;16402;16403;16404;16405	16402				6
VIHVVTSEMDNYEPGVYTEK	Oxidation (M)	2325.0835	0.083478218	769	sp|P35221-2|CTNA1_HUMAN;sp|P35221|CTNA1_HUMAN;sp|P35221-3|CTNA1_HUMAN	yes	no	0	0	0	1	0	1							1		32.715	32.715	3	1.5913E-06	9313	20190902_JH_WT_Ubi_2	113.14	71.938	3717400	583030	0	0	0	0	0	0	3134400	0			5516	769	4859	15610;15611	16406;16407	16407			483	2
VIISAPSADAPMFVMGVNHEK	2 Oxidation (M)	2244.0919	0.091874835	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	2	0	1	1	1	1		1	1	1	1	36.518	36.518	3	0.0010471	9748	20190902_JH_MUT_Ubi_2	72.359	24.791	1951600000	157030000	95308000	339050000	211690000	0	178870000	120790000	387880000	461000000			5517	407	4860	15612;15613;15614;15615;15616;15617;15618;15619	16408;16409;16410;16411;16412;16413;16414;16415	16411			198;199	8
VIISAPSADAPMFVMGVNHEK	Oxidation (M)	2228.097	0.096960213	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	1	0	1	1	2	1	1	1		1	1	39.203	39.203	3	0.0014756	9625	20190821_JH_WT_Ubi	70.837	42.626	837260000	39965000	33905000	403800000	31666000	41310000	73222000	0	108680000	104720000			5518	407	4860	15620;15621;15622;15623;15624;15625;15626;15627;15628	16416;16417;16418;16419;16420;16421;16422;16423;16424	16421			198;199	9
VIISAPSADAPMFVMGVNHEK	Unmodified	2212.102	0.10204559	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1	1	1	1	42.451	42.451	3	8.1304E-05	11021	20190821_JH_WT_Ubi	85.087	59.529	542080000	43833000	59664000	239100000	0	7304200	23826000	31496000	75820000	61043000			5519	407	4860	15629;15630;15631;15632;15633;15634;15635;15636	16425;16426;16427;16428;16429;16430;16431;16432	16430				8
VILALVLPFHPYVENVGGK	Unmodified	2064.1772	0.17718309	1932	sp|Q9H1A3|METL9_HUMAN	yes	yes	0	0	0	0	0			1							50.762	50.762	3	0.011872	14259	20190821_JH_WT_Ubi	53.828	38.574	2695200	0	0	2695200	0	0	0	0	0	0			5520	1932	4861	15637	16433	16433				1
VIQAQTAFSANPANPAILSEASAPIPHDGNLYPR	Unmodified	3529.7954	0.79538054	132	sp|O00560|SDCB1_HUMAN;sp|O00560-2|SDCB1_HUMAN	yes	no	0	0	0	0	0									1	45.43	45.43	3	2.1598E-07	13290	20190902_JH_WT_Ubi_3	82.538	60.695	1123000	0	0	0	0	0	0	0	0	1123000			5521	132	4862	15638	16434	16434				1
VIQGDGVDINTLQEIVEGMK	Oxidation (M)	2173.0936	0.093648974	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	1	0									1	50.403	50.403	3	1.6831E-06	14763	20190902_JH_WT_Ubi_3	112.56	71.472	1591300	0	0	0	0	0	0	0	0	1591300			5522	845	4863	15639	16435	16435			537	1
VIQTSAANFSLNNSK	GlyGly (K);Deamidation (NQ)	1707.8428	0.84277766	2088	sp|Q9P2C4|TM181_HUMAN	yes	yes	0	1	1	0	0								1		34.252	34.252	2	0.025472	9874	20190902_JH_WT_Ubi_2	55.353	11.84	1675600	0	0	0	0	0	0	0	1675600	0			5523	2088	4864	15640	16436	16436	665;666	1966		1
VIRPLDQPSSFDATPYIK	Unmodified	2046.0786	0.078591257	1557	sp|Q86VP6|CAND1_HUMAN	yes	yes	0	0	0	0	1									1	38.416	38.416	3	0.029092	10935	20190902_JH_WT_Ubi_3	65.298	37.802	2744700	0	0	0	0	0	0	0	0	2744700			5524	1557	4865	15641	16437	16437				1
VISGVLQLGNIVFK	Unmodified	1485.8919	0.89190011	776	sp|P35579|MYH9_HUMAN;sp|P35579-2|MYH9_HUMAN	yes	no	0	0	0	0	0	1	1	1				1			50.925	50.925	3	1.7022E-28	13543	20190821_JH_MUT_Ubi	193.28	168.43	6546700	357150	2255600	2296000	0	0	0	1638000	0	0			5525	776	4866	15642;15643;15644;15645	16438;16439;16440;16441	16439				4
VISSIEQKTSADGNEK	GlyGly (K)	1818.8959	0.89593544	1034	sp|P61981|1433G_HUMAN	yes	yes	0	0	1	0	1			1						1	22.93	22.93	3	0.012641	4323	20190821_JH_WT_Ubi	63.29	29.674	5527600	0	0	2555400	0	0	0	0	0	2972200			5526	1034	4867	15646;15647	16442;16443	16442		1012		2
VITNQYNNPAGLYSSENISNFNNALESK	Unmodified	3100.4738	0.47377163	106	sp|O00151|PDLI1_HUMAN	yes	yes	0	0	0	0	0	1		1			1		1	1	44.44	44.44	3	5.7415E-21	11800	20190821_JH_WT_Ubi	129.22	99.768	11748000	1607900	0	6040100	0	0	520570	0	2759400	820110			5527	106	4868	15648;15649;15650;15651;15652	16444;16445;16446;16447;16448;16449;16450;16451	16446				8
VIVCLEEELSVVTSERNQLR	Unmodified	2372.237	0.23695917	887	sp|P49454|CENPF_HUMAN	yes	yes	0	0	0	0	1			1							38.251	38.251	3	0.034139	9235	20190821_JH_WT_Ubi	50.966	3.2867	0	0	0	0	0	0	0	0	0	0			5528	887	4869	15653	16452	16452				1
VIVLDKGEIQEYGAPSDLLQQR	GlyGly (K)	2584.3497	0.34968074	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1	1	1								43.105	43.105	3	1.5232E-08	11349	20190821_JH_EV_Ubi	121.63	83.662	1762300	0	1762300	0	0	0	0	0	0	0			5529	760	4870	15654;15655	16453;16454	16453		742		2
VKAMEVDERPTEQYSDIGGLDK	Oxidation (M);GlyGly (K)	2609.2279	0.22791062	606	sp|P17980|PRS6A_HUMAN	yes	yes	0	0	1	1	2	1				1					29.458	29.458	4	1.2842E-05	6306	20190821_JH_EV_Ubi	88.282	65.38	11608000	4437200	0	0	0	7170400	0	0	0	0			5530	606	4871	15656;15657	16455;16456	16455		593	372	2
VKAMEVDERPTEQYSDIGGLDK	GlyGly (K)	2593.233	0.232996	606	sp|P17980|PRS6A_HUMAN	yes	yes	0	0	1	0	2	1									32.067	32.067	4	0.020646	7256	20190821_JH_EV_Ubi	45.237	14.004	2132700	2132700	0	0	0	0	0	0	0	0			5531	606	4871	15658	16457	16457		593		1
VKDASPNQVAEK	GlyGly (K)	1398.7103	0.71030693	203	sp|O43402-2|EMC8_HUMAN;sp|O43402|EMC8_HUMAN	yes	no	0	0	1	0	1			1				1	1		17.362	17.362	2;3	0.013294	3155	20190821_JH_WT_Ubi	77.204	29.902	2873100	0	0	1009100	0	0	0	275250	1588700	0			5532	203	4872	15659;15660;15661	16458;16459;16460	16459		185		3
VKDLESLFHR	GlyGly (K)	1356.715	0.71499837	1150	sp|Q03252|LMNB2_HUMAN	yes	yes	0	0	1	0	1		1								32.507	32.507	3	0.020256	6739	20190821_JH_MUT_Ubi	74.533	11.901	328870	0	328870	0	0	0	0	0	0	0			5533	1150	4873	15662	16461	16461		1152		1
VKEPSQDTVATEPSEVEGSAANK	GlyGly (K)	2486.1773	0.17725526	1817	sp|Q96RU2-3|UBP28_HUMAN;sp|Q96RU2-2|UBP28_HUMAN;sp|Q96RU2|UBP28_HUMAN	yes	no	0	0	1	0	1	1	1		1	1	1	1	1	1	26.513	26.513	3	6.4365E-16	7222	20190902_JH_WT_Ubi_2	136.11	96.757	15264000	1514000	502740	0	2112300	1707400	1366200	856500	3964800	3239700			5534	1817	4874	15663;15664;15665;15666;15667;15668;15669;15670	16462;16463;16464;16465;16466;16467;16468;16469	16468		1783		8
VKGHFGPINSVAFHPDGK	GlyGly (K)	2020.0279	0.027893091	1231	sp|Q13347|EIF3I_HUMAN	yes	yes	0	0	1	0	1									1	27.503	27.503	4	0.03584	7241	20190902_JH_WT_Ubi_3	40.52	14.372	2142700	0	0	0	0	0	0	0	0	2142700			5535	1231	4875	15671	16470	16470				1
VKLPKNYMMSNGYK	2 Oxidation (M);Deamidation (NQ)	1704.8215	0.82151363	1347	sp|Q15413-3|RYR3_HUMAN;sp|Q15413-2|RYR3_HUMAN;sp|Q15413|RYR3_HUMAN	yes	no	0	1	0	2	2				1						20.129	20.129	3	0.035959	4217	20190902_JH_EV_Ubi_2	43.991	6.3778	0	0	0	0	0	0	0	0	0	0			5536	1347	4876	15672	16471	16471	428			1
VKMPEQEYEFPEPR	Oxidation (M);GlyGly (K)	1907.8724	0.87236323	1961	sp|Q9H6X2-5|ANTR1_HUMAN;sp|Q9H6X2|ANTR1_HUMAN	yes	no	0	0	1	1	1						1	1	1	1	29.819	29.819	3	0.0031119	8084	20190902_JH_WT_Ubi_3	90.759	36.813	4007600	0	0	0	0	0	1082400	992910	0	1932300			5537	1961	4877	15673;15674;15675;15676	16472;16473;16474;16475	16475		1890	1066	4
VKPAPDETSFSEALLK	GlyGly (K)	1844.952	0.95199376	1199	sp|Q12905|ILF2_HUMAN	yes	yes	0	0	1	0	1		1				1	1	1	1	35.783	35.783	3	3.8483E-05	8879	20190902_JH_MUT_Ubi_3	113.65	72.903	15130000	0	1584000	0	0	0	3635300	1885400	4336600	3688800			5538	1199	4878	15677;15678;15679;15680;15681	16476;16477;16478;16479;16480	16478		1267		5
VKPVGAAGGSSTPSPR	GlyGly (K)	1580.8271	0.82706802	79	sp|A4D1S0-2|KLRG2_HUMAN;sp|A4D1S0|KLRG2_HUMAN	yes	no	0	0	1	0	1							1			19.746	19.746	3	0.0059366	4231	20190902_JH_MUT_Ubi_3	72.523	42.718	658620	0	0	0	0	0	0	658620	0	0			5539	79	4879	15682	16481	16481		74		1
VKQMHLNFMDEKDR	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	1921.8662	0.866232	1997	sp|Q9NNZ3|DNJC4_HUMAN	yes	yes	0	2	1	1	2									1	33.071	33.071	2	0.032289	9137	20190902_JH_WT_Ubi_3	52.391	6.7376	0	0	0	0	0	0	0	0	0	0			5540	1997	4880	15683	16482	16482	641;1265		1078	1
VKTPSFGISAPQVSIPDVNVNLK	GlyGly (K)	2523.3697	0.3696879	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1				1	1			45.011	45.011	3	4.3085E-06	13017	20190902_JH_MUT_Ubi_2	93.572	69.215	10376000	0	5046900	0	0	0	2695900	2633500	0	0			5541	1190	4881	15684;15685;15686	16483;16484;16485	16484		1231;1257		3
VLAALAASSGSSSASSSSAPVAASSGQATTQSK	Unmodified	2923.4371	0.43705178	1441	sp|Q5T4S7-3|UBR4_HUMAN;sp|Q5T4S7-4|UBR4_HUMAN;sp|Q5T4S7|UBR4_HUMAN;sp|Q5T4S7-2|UBR4_HUMAN	yes	no	0	0	0	0	0	1			1	1			1	1	32.939	32.939	3	1.0365E-56	9472	20190902_JH_WT_Ubi_2	176	141.78	7392700	1974500	0	0	1669400	1117500	0	0	2631400	0			5542	1441	4882	15687;15688;15689;15690;15691	16486;16487;16488;16489;16490;16491;16492	16490				7
VLAGQTLDINMAGEPKPDRPK	Oxidation (M)	2265.1787	0.17871601	2154	sp|Q9UKM9-2|RALY_HUMAN;sp|Q9UKM9|RALY_HUMAN	yes	no	0	0	0	1	2	1									29.098	29.098	4	0.011079	6094	20190821_JH_EV_Ubi	50.392	25.499	2249900	2249900	0	0	0	0	0	0	0	0			5543	2154	4883	15692	16493	16493			1128	1
VLAVNQENEHLMEDYEK	Oxidation (M)	2075.947	0.94698474	214	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN	yes	no	0	0	0	1	0	1							1	1	28.997	28.997	3	0.003732	8024	20190902_JH_WT_Ubi_2	72.898	54.664	24362000	1721500	0	0	0	0	0	0	12658000	9982300			5544	214	4884	15693;15694;15695	16494;16495;16496	16495			89	3
VLCLAVAVGHVK	Unmodified	1264.7326	0.73256269	1069	sp|P62906|RL10A_HUMAN	yes	yes	0	0	0	0	0			1			1	1		1	33.529	33.529	3	1.3956E-05	7610	20190821_JH_WT_Ubi	135.55	109.61	14096000	0	0	7848200	0	0	1877600	1051900	0	3318600			5545	1069	4885	15696;15697;15698;15699	16497;16498;16499;16500	16499				4
VLDALFPCVQGGTTAIPGAFGCGK	Unmodified	2435.1977	0.19773689	801	sp|P38606-2|VATA_HUMAN;sp|P38606|VATA_HUMAN	yes	no	0	0	0	0	0			1							51.754	51.754	3	0.026038	14611	20190821_JH_WT_Ubi	38.237	5.4405	2146500	0	0	2146500	0	0	0	0	0	0			5546	801	4886	15700	16501	16501				1
VLDFEHFLPMLQTVAK	Oxidation (M)	1902.9914	0.99135615	999	sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN	yes	no	0	0	0	1	0		1	1			1	1	1	1	49.807	49.807	3	3.3275E-08	13210	20190821_JH_MUT_Ubi	133.48	58.804	87104000	0	11085000	29069000	0	0	11520000	6284000	12739000	16406000			5547	999	4887	15701;15702;15703;15704;15705;15706	16502;16503;16504;16505;16506;16507	16502			611	6
VLDFEHFLPMLQTVAK	Unmodified	1886.9964	0.99644153	999	sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN	yes	no	0	0	0	0	0		2	1				1			53.462	53.462	2;3	6.6285E-19	15185	20190821_JH_WT_Ubi	160.65	115.72	43136000	0	14305000	24797000	0	0	0	4033800	0	0			5548	999	4887	15707;15708;15709;15710	16508;16509;16510;16511	16511				4
VLDFEHFLPMLQTVAK	Oxidation (M);Deamidation (NQ)	1903.9754	0.97537174	999	sp|P60660|MYL6_HUMAN;sp|P60660-2|MYL6_HUMAN	yes	no	0	1	0	1	0								1	1	51.073	51.073	3	0.025532	14877	20190902_JH_WT_Ubi_3	60.657	26.816	3314700	0	0	0	0	0	0	0	1373200	1941600			5549	999	4887	15711;15712	16512;16513	16513	955		611	2
VLDKYEDVVQGLQK	GlyGly (K)	1746.9152	0.91521432	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1							1			35.335	35.335	3	0.026598	8874	20190902_JH_MUT_Ubi_3	64.798	37.769	0	0	0	0	0	0	0	0	0	0			5550	245	4888	15713	16514	16514		217;218		1
VLDNYLTSPLPEEVDETSAEDEGVSQR	Unmodified	2991.3833	0.38328487	121	sp|O00299|CLIC1_HUMAN	yes	yes	0	0	0	0	0								1		46.417	46.417	3	3.897E-05	13999	20190902_JH_WT_Ubi_2	81.799	45.927	12656000	0	0	0	0	0	0	0	12656000	0			5551	121	4889	15714	16515	16515				1
VLDSEKLLYVLEADAAIAK	GlyGly (K)	2174.1835	0.18345026	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1	1									51.984	51.984	3	0.00057831	14034	20190821_JH_EV_Ubi	83.891	54.507	584230	584230	0	0	0	0	0	0	0	0			5552	245	4890	15715	16516	16516		219		1
VLEDDPEATYTTSGGKIPIR	GlyGly (K)	2275.1332	0.1332056	713	sp|P29317|EPHA2_HUMAN	yes	yes	0	0	1	0	1		1		1	1	1				34.361	34.361	3	0.00062166	8324	20190902_JH_EV_Ubi_2	79.88	56.78	6090100	0	1349000	0	1712500	1669800	1358800	0	0	0			5553	713	4891	15716;15717;15718;15719	16517;16518;16519;16520	16517		693		4
VLELDPALAPVVSR	Unmodified	1477.8504	0.85042922	110	sp|O00170|AIP_HUMAN	yes	yes	0	0	0	0	0			1							45.798	45.798	2	0.012331	12356	20190821_JH_WT_Ubi	73.632	40.407	2878900	0	0	2878900	0	0	0	0	0	0			5554	110	4892	15720	16521	16521				0
VLEQHKLNK	GlyGly (K)	1221.683	0.68296996	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	1	0	1	1	1	1							15.32	15.32	3	0.015088	2601	20190821_JH_EV_Ubi	84.498	12.255	11810000	4105200	2536400	5168100	0	0	0	0	0	0			5555	686	4893	15721;15722;15723	16522;16523;16524	16522		674;675		3
VLEQHKLTK	GlyGly (K)	1208.6877	0.68772099	773	sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN	yes	no	0	0	1	0	1	1		1							16.524	16.524	3	0.030014	2775	20190821_JH_EV_Ubi	68.735	15.138	26492000	9618500	0	16873000	0	0	0	0	0	0			5556	773	4894	15724;15725	16525;16526	16525		760		2
VLEQLIVAHFPMQSR	Unmodified	1766.9502	0.95016004	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	0	0	0	0		1								43.622	43.622	3	0.0067376	10945	20190821_JH_MUT_Ubi	70.98	17.452	1771000	0	1771000	0	0	0	0	0	0	0			5557	1107	4895	15726	16527	16527				1
VLEQLIVAHFPMQSR	Oxidation (M)	1782.9451	0.94507466	1107	sp|P78527-2|PRKDC_HUMAN;sp|P78527|PRKDC_HUMAN	yes	no	0	0	0	1	0			1			1	1	1	1	40.271	40.271	3	0.0029379	10171	20190821_JH_WT_Ubi	83.292	38.012	24439000	0	0	9188300	0	0	2185800	2485500	5911200	4668400			5558	1107	4895	15727;15728;15729;15730;15731	16528;16529;16530;16531;16532	16530			689	5
VLEQLTGQTPVFSKAR	GlyGly (K)	1887.0214	0.021410729	1070	sp|P62913-2|RL11_HUMAN;sp|P62913|RL11_HUMAN	yes	no	0	0	1	0	1						1	1			34.767	34.767	3	0.00024818	8644	20190902_JH_MUT_Ubi_3	105.99	62.301	10337000	0	0	0	0	0	4918100	5418600	0	0			5559	1070	4896	15732;15733	16533;16534	16534		1047		2
VLETKWTLLQEQGTK	GlyGly (K)	1887.0102	0.010177341	3	sp|P02538|K2C6A_HUMAN;CON__P02538	yes	no	0	0	1	0	1		1		1					1	35.901	35.901	3	0.00060025	8205	20190821_JH_MUT_Ubi	104.09	64.927	5585000	0	1815700	0	864290	0	0	0	0	2905000		+	5560	3	4897	15734;15735;15736	16535;16536;16537	16536		3		3
VLFEDPLFPATDDSLYYKGTPGPAVR	GlyGly (K)	2981.4811	0.48108884	188	sp|O15484|CAN5_HUMAN	yes	yes	0	0	1	0	1			1			1		1		48.837	48.837	3	0.0016714	13563	20190821_JH_WT_Ubi	61.903	40.202	11348000	0	0	7557400	0	0	1161000	0	2629800	0			5561	188	4898	15737;15738;15739	16538;16539;16540	16539		170		2
VLGAHILGPGAGEMVNEAALALEYGASCEDIAR	Oxidation (M)	3369.6333	0.63332552	491	sp|P09622-2|DLDH_HUMAN;sp|P09622-3|DLDH_HUMAN;sp|P09622|DLDH_HUMAN	yes	no	0	0	0	1	0			1							47.612	47.612	3	5.3274E-05	13062	20190821_JH_WT_Ubi	67.033	42.756	2033400	0	0	2033400	0	0	0	0	0	0			5562	491	4899	15740	16541	16541			284	1
VLGHVNNILISAVLPTAFR	Unmodified	2033.1786	0.17858007	1666	sp|Q8TB36-2|GDAP1_HUMAN;sp|Q8TB36|GDAP1_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	49.088	49.088	3	4.9271E-05	13657	20190821_JH_WT_Ubi	101.92	81.266	8682100	0	553430	4890800	0	0	0	0	869060	2368800			5563	1666	4900	15741;15742;15743;15744	16542;16543;16544;16545	16543				4
VLGIVVGVLLQDHDVR	Unmodified	1731.0043	0.004304102	81	sp|A5YKK6-3|CNOT1_HUMAN;sp|A5YKK6-2|CNOT1_HUMAN;sp|A5YKK6|CNOT1_HUMAN	yes	no	0	0	0	0	0			1							47.244	47.244	3	0.028673	12947	20190821_JH_WT_Ubi	46.206	12.941	1315900	0	0	1315900	0	0	0	0	0	0			5564	81	4901	15745	16546	16546				1
VLGQLHGGPSSCSATGTNR	Unmodified	1897.9065	0.90645733	10	CON__P15636	yes	yes	0	0	0	0	0	1	1	1	1	1	1	1	1	2	23.48	23.48	2;3	3.9769E-39	6197	20190902_JH_WT_Ubi_2	184.21	136.97	775300000	36869000	8450800	165500000	36923000	33839000	12610000	11326000	367600000	102190000		+	5565	10	4902	15746;15747;15748;15749;15750;15751;15752;15753;15754;15755	16547;16548;16549;16550;16551;16552;16553;16554;16555;16556;16557;16558	16555				12
VLGQLHGGPSSCSATGTNR	Deamidation (NQ)	1898.8905	0.89047291	10	CON__P15636	yes	yes	0	1	0	0	0				1				1	1	24.423	24.423	3	5.1244E-05	6489	20190902_JH_WT_Ubi_2	107.65	78.232	15666000	0	0	0	861760	0	0	0	9323400	5481100		+	5566	10	4902	15756;15757;15758	16559;16560;16561	16560	9;722			3
VLGSLEALEPVHYEEK	Unmodified	1811.9305	0.93053004	694	sp|P27338|AOFB_HUMAN	yes	yes	0	0	0	0	0								1	1	39.09	39.09	3	0.0047309	11112	20190902_JH_WT_Ubi_3	71.513	40.785	6819600	0	0	0	0	0	0	0	3439500	3380100			5567	694	4903	15759;15760	16562;16563	16563				2
VLGSQEALHPVHYEEK	Unmodified	1834.9214	0.92136233	638	sp|P21397|AOFA_HUMAN;sp|P21397-2|AOFA_HUMAN	yes	no	0	0	0	0	0			1					1	1	26.074	26.074	4	0.002133	6722	20190902_JH_WT_Ubi_3	76.759	40.467	96880000	0	0	23931000	0	0	0	0	40265000	32683000			5568	638	4904	15761;15762;15763	16564;16565;16566	16566				3
VLGVQRPLLQSTIIVEK	Unmodified	1892.1459	0.14588296	1753	sp|Q96A65|EXOC4_HUMAN	yes	yes	0	0	0	0	1	1									39.041	39.041	3	0.032847	9777	20190821_JH_EV_Ubi	67.326	46.675	2112100	2112100	0	0	0	0	0	0	0	0			5569	1753	4905	15764	16567	16567				1
VLHEAEGHIVTCETNTGEVYR	Unmodified	2413.1332	0.13322238	1049	sp|P62318-2|SMD3_HUMAN;sp|P62318|SMD3_HUMAN	yes	no	0	0	0	0	0			1					1		27.521	27.521	3	8.4585E-22	5544	20190821_JH_WT_Ubi	148.19	93.238	6695400	0	0	3540100	0	0	0	0	3155300	0			5570	1049	4906	15765;15766	16568;16569	16568				2
VLHPLEGAVVIIFK	Unmodified	1533.9283	0.92828561	1260	sp|Q13740-2|CD166_HUMAN;sp|Q13740|CD166_HUMAN	yes	no	0	0	0	0	0	1	1	1			1	1	1	1	44.907	44.907	3	1.0154E-20	12180	20190821_JH_EV_Ubi	176.87	136.85	40152000	11717000	9658500	7404500	0	0	3594400	4498000	1883100	1396100			5571	1260	4907	15767;15768;15769;15770;15771;15772;15773	16570;16571;16572;16573;16574;16575;16576	16570				7
VLIFQEENEIPASVFVKQPVSGAVEGK	GlyGly (K)	3027.5917	0.59170192	359	sp|O95810|CAVN2_HUMAN	yes	yes	0	0	1	0	1	1		1							46.62	46.62	3	7.6733E-05	12638	20190821_JH_WT_Ubi	79.586	54.329	4373000	1038600	0	3334400	0	0	0	0	0	0			5572	359	4908	15774;15775	16577;16578	16578		322		2
VLKQVHPDTGISSK	GlyGly (K)	1621.8788	0.87876924	261;666;995	sp|Q16778|H2B2E_HUMAN;sp|P62807|H2B1C_HUMAN;sp|P57053|H2BFS_HUMAN;sp|P06899|H2B1J_HUMAN;sp|O60814|H2B1K_HUMAN;sp|Q99880|H2B1L_HUMAN;sp|Q99879|H2B1M_HUMAN;sp|Q99877|H2B1N_HUMAN;sp|Q8N257|H2B3B_HUMAN;sp|P33778|H2B1B_HUMAN;sp|Q96A08|H2B1A_HUMAN;sp|Q93079|H2B1H_HUMAN;sp|Q5QNW6|H2B2F_HUMAN;sp|P23527|H2B1O_HUMAN;sp|Q5QNW6-2|H2B2F_HUMAN;sp|P58876|H2B1D_HUMAN	no	no	0	0	1	0	1			1	1		1	1		1	20.988	20.988	3;4	0.0057424	4422	20190902_JH_MUT_Ubi_3	80.746	43.59	45467000	0	0	9318500	2807100	0	10825000	11509000	0	11007000			5573	261;666;995	4909	15776;15777;15778;15779;15780	16579;16580;16581;16582;16583	16581		254		5
VLKVLSVCSSNK	GlyGly (K)	1446.7864	0.78644876	770	sp|P35222|CTNB1_HUMAN	yes	yes	0	0	1	0	1		1								27.991	27.991	3	0.022793	5094	20190821_JH_MUT_Ubi	67.997	38.061	838500	0	838500	0	0	0	0	0	0	0			5574	770	4910	15781	16584	16584		757		1
VLLSICSLLCDPNPDDPLVPEIAR	Unmodified	2705.3768	0.37682347	1010	sp|P62837-2|UB2D2_HUMAN;sp|P62837|UB2D2_HUMAN;sp|P61077|UB2D3_HUMAN;sp|P61077-2|UB2D3_HUMAN;sp|P61077-3|UB2D3_HUMAN	yes	no	0	0	0	0	0		1	1							55.712	55.712	3	9.5536E-05	15961	20190821_JH_WT_Ubi	81.379	52.243	4596900	0	1529900	3067000	0	0	0	0	0	0			5575	1010	4911	15782;15783	16585;16586;16587	16586				3
VLLSLEHGLWAPNLHFHSPNPEIPALLDGR	Unmodified	3341.7673	0.7673153	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0		1	1					1		48.258	48.258	4;5	0.0023193	12647	20190821_JH_MUT_Ubi	49.559	32.124	20302000	0	6567200	7997200	0	0	0	0	5738100	0			5576	881	4912	15784;15785;15786	16588;16589;16590	16588				3
VLMEKEFPGFLENQK	Oxidation (M);GlyGly (K)	1937.9557	0.95569893	1004	sp|P60903|S10AA_HUMAN	yes	yes	0	0	1	1	1	1	1				1		1		36.389	36.389	3	3.2485E-08	8352	20190821_JH_MUT_Ubi	145.49	99.175	49279000	9530700	10556000	0	0	0	14723000	0	14469000	0			5577	1004	4913	15787;15788;15789;15790	16591;16592;16593;16594	16592		993;994	628	4
VLMEKEFPGFLENQK	GlyGly (K)	1921.9608	0.96078431	1004	sp|P60903|S10AA_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1	1	1	39.408	39.408	3	2.9668E-15	9410	20190821_JH_MUT_Ubi	162.88	123.36	46797000	2833000	8308900	8911800	1214200	1884500	6737000	9387100	3471700	4048700			5578	1004	4913	15791;15792;15793;15794;15795;15796;15797;15798;15799	16595;16596;16597;16598;16599;16600;16601;16602;16603	16598		993;994		9
VLNEAVGALMYHTITLTR	Unmodified	2001.0717	0.07173174	1233	sp|Q13363-2|CTBP1_HUMAN;sp|Q13363|CTBP1_HUMAN	yes	no	0	0	0	0	0			1							46.074	46.074	3	0.0012308	12450	20190821_JH_WT_Ubi	75.968	41.356	5957400	0	0	5957400	0	0	0	0	0	0			5579	1233	4914	15800	16604	16604				1
VLNLVLPNLSLGPIDSSVLSR	Unmodified	2205.2733	0.27326832	1841	sp|Q99685|MGLL_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1			55.421	55.421	3	8.1087E-22	14819	20190821_JH_MUT_Ubi	148.64	96.623	17068000	0	11296000	3402500	0	0	1027500	1341500	0	0			5580	1841	4915	15801;15802;15803;15804	16605;16606;16607;16608	16605				4
VLNNMEIGTSLFDEEGAK	Unmodified	1965.9354	0.93535742	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	0	0		1	1							45.337	45.337	2	8.8678E-204	12101	20190821_JH_WT_Ubi	312.67	191.31	23055000	0	1994600	21060000	0	0	0	0	0	0			5581	383	4916	15805;15806	16609;16610	16610				2
VLNNMEIGTSLFDEEGAK	Oxidation (M)	1981.9303	0.93027204	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	0	1	0								1	1	41.047	41.047	3	0.00036731	11783	20190902_JH_WT_Ubi_3	89.877	53.856	6490000	0	0	0	0	0	0	0	2796100	3693900			5582	383	4916	15807;15808	16611;16612	16612			182	2
VLNNMEIGTSLFDEEGAK	Deamidation (NQ)	1966.9194	0.919373	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	1	0	0	0									1	47.03	47.03	2	0.0027288	13764	20190902_JH_WT_Ubi_3	82.515	26.111	1415300	0	0	0	0	0	0	0	0	1415300			5583	383	4916	15809	16613	16613	123;124			0
VLNNMEIGTSLFDEEGAKIVK	Oxidation (M);GlyGly (K)	2436.2206	0.2206404	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN	yes	no	0	0	1	1	1		1		1		1	1			40.122	40.122	3	0.00023559	10289	20190902_JH_MUT_Ubi_3	83.393	46.538	6788100	0	1774000	0	1498500	0	2074300	1441300	0	0			5584	383	4917	15810;15811;15812;15813	16614;16615;16616;16617	16617		350;351	182	4
VLPAQATEYAFAFIQVPQDDDAR	Unmodified	2564.2547	0.25471772	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	0	0			1							53.7	53.7	3	0.00099228	15311	20190821_JH_WT_Ubi	69.398	42.874	5418600	0	0	5418600	0	0	0	0	0	0			5585	1518	4918	15814	16618	16618				1
VLPQLISTITASVQNPALR	Unmodified	2020.1681	0.16807497	1717	sp|Q92616|GCN1_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1			52.198	52.198	2;3	1.2721E-13	13896	20190821_JH_MUT_Ubi	142.35	72.865	4751200	0	1474400	2115900	0	0	910470	250400	0	0			5586	1717	4919	15815;15816;15817;15818	16619;16620;16621;16622	16619				3
VLPYLKGICSGGGGDPER	GlyGly (K)	1987.9786	0.97855964	151	sp|O14763-2|TR10B_HUMAN;sp|O14763|TR10B_HUMAN	yes	no	0	0	1	0	1		1	1			1	1	1	1	34.865	34.865	3	0.0010008	9710	20190902_JH_WT_Ubi_3	82.663	51.551	44036000	0	3608100	10552000	0	0	5717600	4657900	10341000	9160200			5587	151	4920	15819;15820;15821;15822;15823;15824	16623;16624;16625;16626;16627;16628	16628		123		6
VLQATVVAVGSGSK	Unmodified	1314.7507	0.75071518	1026	sp|P61604|CH10_HUMAN	yes	yes	0	0	0	0	0								1		31.649	31.649	3	0.0061895	8952	20190902_JH_WT_Ubi_2	74.649	41.609	7989600	0	0	0	0	0	0	0	7989600	0			5588	1026	4921	15825	16629	16629				1
VLQLYQITQINHGLMMVGPSGSGK	2 Oxidation (M)	2602.3247	0.32472832	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	2	0	1	1	1	1						41.73	41.73	3	0.0009816	10662	20190821_JH_WT_Ubi	68.401	46.284	14331000	3928000	1286200	7453800	1663400	0	0	0	0	0			5589	1284	4922	15826;15827;15828;15829	16630;16631;16632;16633	16633			798;799	4
VLQLYQITQINHGLMMVGPSGSGK	Oxidation (M);Deamidation (NQ)	2587.3138	0.31382928	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	1	0	1	0	1									44.386	44.386	3	0.037186	11867	20190821_JH_EV_Ubi	44.105	11.924	1455800	1455800	0	0	0	0	0	0	0	0			5590	1284	4922	15830	16634	16634			798;799	1
VLQQTLNYINQGVSHALTWK	Unmodified	2312.2277	0.22771511	341	sp|O95373|IPO7_HUMAN	yes	yes	0	0	0	0	0			1							45.953	45.953	3	0.0050709	12408	20190821_JH_WT_Ubi	61.167	32.834	13106000	0	0	13106000	0	0	0	0	0	0			5591	341	4923	15831	16635	16635				1
VLRPPGGGSNFSLGFDEPTEQPVR	Unmodified	2555.2769	0.27685015	2149	sp|Q9UK76|JUPI1_HUMAN;sp|Q9UK76-2|JUPI1_HUMAN	yes	no	0	0	0	0	1		1	1			1		1	1	39.642	39.642	3	1.1999E-22	9783	20190821_JH_WT_Ubi	155.16	106.34	15065000	0	1451000	5980500	0	0	1226900	0	3604300	2802500			5592	2149	4924	15832;15833;15834;15835;15836	16636;16637;16638;16639;16640;16641;16642	16638				7
VLRPQVTAVAQQNQGEVPEPQDMK	Oxidation (M)	2677.3494	0.34936316	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	1	1			1					1	1	30.789	30.789	3	1.2029E-30	6589	20190821_JH_WT_Ubi	170.02	124.58	11996000	0	0	3998900	0	0	0	0	3406300	4590800			5593	1284	4925	15837;15838;15839	16643;16644;16645	16643			800	3
VLRPQVTAVAQQNQGEVPEPQDMK	Unmodified	2661.3544	0.35444854	1284	sp|Q14204|DYHC1_HUMAN	yes	yes	0	0	0	0	1			1							33.299	33.299	3	0.024692	7412	20190821_JH_WT_Ubi	56.461	22.241	1170100	0	0	1170100	0	0	0	0	0	0			5594	1284	4925	15840	16646	16646				1
VLSAPPHFHFGQTNR	Unmodified	1706.8641	0.86412223	691	sp|P26641|EF1G_HUMAN;sp|P26641-2|EF1G_HUMAN	yes	no	0	0	0	0	0	1	1	1			1		1		29.36	29.36	3;4	0.021831	8071	20190902_JH_WT_Ubi_2	49.62	29.781	439770000	2219600	23425000	156310000	0	0	40855000	0	216960000	0			5595	691	4926	15841;15842;15843;15844;15845	16647;16648;16649;16650;16651	16651				5
VLSEDEEDVDFDIIHNANDTFTVK	Unmodified	2764.2715	0.27154958	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1					1		45.848	45.848	3	1.329E-09	12335	20190821_JH_WT_Ubi	113.33	85.919	9947600	0	0	6209500	0	0	0	0	3738100	0			5596	282	4927	15846;15847	16652;16653	16652				2
VLSGTIHAGQPVK	Unmodified	1305.7405	0.74048484	1317	sp|Q15029-2|U5S1_HUMAN;sp|Q15029-3|U5S1_HUMAN;sp|Q15029|U5S1_HUMAN	yes	no	0	0	0	0	0		1	1	1						23.549	23.549	2;3	0.0064727	4882	20190902_JH_EV_Ubi_2	90.05	54.539	9724800	0	1929900	6154000	1641000	0	0	0	0	0			5597	1317	4928	15848;15849;15850	16654;16655;16656	16654				2
VLSIAQAHSPAFSCEQVR	Unmodified	1998.9945	0.99454405	468	sp|P08571|CD14_HUMAN	yes	yes	0	0	0	0	0									1	32.813	32.813	3	0.005088	9051	20190902_JH_WT_Ubi_3	64.588	40.757	2695900	0	0	0	0	0	0	0	0	2695900			5598	468	4929	15851	16657	16657				1
VLSKEFHLNESGDPSSK	GlyGly (K)	1986.9647	0.96468371	1131	sp|Q01105|SET_HUMAN;sp|Q01105-3|SET_HUMAN;sp|Q01105-4|SET_HUMAN;sp|Q01105-2|SET_HUMAN	yes	no	0	0	1	0	1								1		26.907	26.907	3	0.0031788	7281	20190902_JH_WT_Ubi_2	74.726	38.835	3147200	0	0	0	0	0	0	0	3147200	0			5599	1131	4930	15852	16658	16658		1123;1126		1
VLSLETYPVSSPKSMSNK	Oxidation (M);GlyGly (K)	2096.046	0.0459705	1966	sp|Q9H7F0|AT133_HUMAN	yes	yes	0	0	1	1	1	1			1	1		1			31.618	31.618	3	0.0057841	7221	20190821_JH_EV_Ubi	69.594	46.032	10326000	1880800	0	0	4528500	2153100	0	1763700	0	0			5600	1966	4931	15853;15854;15855;15856	16659;16660;16661;16662	16659		1897;1898	1068	4
VLSSSGSEAAVPSVCFLVPPPNQEAQEAVTR	Unmodified	3225.5976	0.59759194	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	0	0	0	0			1	1				1		47.731	47.731	3	1.1335E-07	14430	20190902_JH_WT_Ubi_2	91.617	60.247	23973000	0	0	16853000	648000	0	0	0	6472300	0			5601	1332	4932	15857;15858;15859	16663;16664;16665	16665				3
VLSSSGSEAAVPSVCFLVPPPNQEAQEAVTR	Deamidation (NQ)	3226.5816	0.58160752	1332	sp|Q15149|PLEC_HUMAN;sp|Q15149-7|PLEC_HUMAN;sp|Q15149-8|PLEC_HUMAN;sp|Q15149-9|PLEC_HUMAN;sp|Q15149-5|PLEC_HUMAN;sp|Q15149-4|PLEC_HUMAN;sp|Q15149-6|PLEC_HUMAN;sp|Q15149-3|PLEC_HUMAN;sp|Q15149-2|PLEC_HUMAN	yes	no	0	1	0	0	0					1					47.534	47.534	3	0.0029874	11895	20190902_JH_EV_Ubi_3	67.848	28.695	0	0	0	0	0	0	0	0	0	0			5602	1332	4932	15860	16666	16666	1044			1
VLTFALSEEVRPQDTVSVIGGVAGGSK	Unmodified	2715.4443	0.44430941	983	sp|P55786-2|PSA_HUMAN;sp|P55786|PSA_HUMAN	yes	no	0	0	0	0	1			1							46.102	46.102	3	0.00039867	12453	20190821_JH_WT_Ubi	77.894	57.028	4061500	0	0	4061500	0	0	0	0	0	0			5603	983	4933	15861	16667	16667				1
VLVGGGTGFIGTALTQLLNAR	Unmodified	2057.1633	0.16332394	2014	sp|Q9NRG7-2|D39U1_HUMAN	yes	yes	0	0	0	0	0		1	1							55.666	55.666	3	1.1468E-30	14857	20190821_JH_MUT_Ubi	170.79	116.4	11632000	0	5143000	6489300	0	0	0	0	0	0			5604	2014	4934	15862;15863	16668;16669	16668				2
VLVLDKGVVAEFDSPANLIAAR	GlyGly (K)	2410.322	0.32200943	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN	yes	no	0	0	1	0	1		1				1	1			48.268	48.268	3	2.3063E-11	12714	20190902_JH_MUT_Ubi_3	127.49	81.785	2610000	0	1244600	0	0	0	728770	636610	0	0			5605	186	4935	15864;15865;15866	16670;16671;16672	16672		165		3
VLYAYGYYTGEPSK	Unmodified	1609.7664	0.76642482	158	sp|O14880|MGST3_HUMAN	yes	yes	0	0	0	0	0			1							36.757	36.757	2	2.5223E-18	8646	20190821_JH_WT_Ubi	181.31	131.89	17688000	0	0	17688000	0	0	0	0	0	0			5606	158	4936	15867	16673	16673				0
VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR	Unmodified	3415.7412	0.74121971	647	sp|P22087|FBRL_HUMAN	yes	yes	0	0	0	0	0			1							49.323	49.323	4	0.0075124	13731	20190821_JH_WT_Ubi	38.553	10.408	12683000	0	0	12683000	0	0	0	0	0	0			5607	647	4937	15868	16674	16674				1
VLYTCFQSIQAQKSSEYER	GlyGly (K)	2450.1536	0.15362347	856	sp|P46736-2|BRCC3_HUMAN;sp|P46736-3|BRCC3_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	34.398	34.398	3	2.2185E-13	10037	20190902_JH_WT_Ubi_2	141.22	87.502	152110000	10084000	16609000	32877000	3213700	3237800	16042000	12111000	26608000	31331000			5608	856	4938	15869;15870;15871;15872;15873;15874;15875;15876;15877	16675;16676;16677;16678;16679;16680;16681;16682;16683	16682		833		9
VMALLQLMVSALNRCQIEPVTK	Oxidation (M);GlyGly (K)	2643.391	0.39103374	51		yes	no	0	0	1	1	1								1		39.279	39.279	3	0.0098526	11609	20190902_JH_WT_Ubi_2	57.482	21.51	2616400	0	0	0	0	0	0	0	2616400	0	+		5609	51	4939	15878	16684	16684		54	34	1
VMELESENLNLKSKMK	Oxidation (M);GlyGly (K);Deamidation (NQ)	2022.9966	0.99657747	1671	sp|Q8TBZ0-2|CC110_HUMAN;sp|Q8TBZ0|CC110_HUMAN	yes	no	0	1	1	1	2								1		37.233	37.233	3	0.015217	10895	20190902_JH_WT_Ubi_2	68.972	18.166	13256000	0	0	0	0	0	0	0	13256000	0			5610	1671	4940	15879	16685	16685	544	1669	961	1
VMETQAQVDELKGIMVR	2 Oxidation (M);GlyGly (K)	2092.0293	0.029274578	925	sp|P51809-3|VAMP7_HUMAN;sp|P51809|VAMP7_HUMAN;sp|P51809-2|VAMP7_HUMAN	yes	no	0	0	1	2	1						1				32.569	32.569	3	0.021916	8283	20190902_JH_MUT_Ubi_2	55.546	24.862	1482800	0	0	0	0	0	1482800	0	0	0			5611	925	4941	15880	16686	16686		890	581;582	0
VMKQSEENNNLQSQVQK	Oxidation (M);GlyGly (K)	2133.012	0.012044609	1546	sp|Q86TG7|PEG10_HUMAN;sp|Q86TG7-2|PEG10_HUMAN	yes	no	0	0	1	1	1		1					1			20.281	20.281	3	1.5081E-19	3176	20190821_JH_MUT_Ubi	168.47	106.09	1196400	0	467460	0	0	0	0	728960	0	0			5612	1546	4942	15881;15882	16687;16688	16687		1542	919	2
VMLGETNPADSKPGTIR	Oxidation (M);GlyGly (K)	1914.9469	0.94692516	652;573	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN;sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	no	no	0	0	1	1	1	1	1	1			1	1	1	1	27.729	27.729	3	3.6113E-08	6436	20190902_JH_MUT_Ubi_2	132.81	96.18	47841000	2172400	4956500	5370300	0	0	5564200	8176100	9418000	12184000			5613	652;573	4943	15883;15884;15885;15886;15887;15888;15889	16689;16690;16691;16692;16693;16694;16695;16696	16692		565	359	8
VMTIAPGLFGTPLLTSLPEK	Oxidation (M)	2100.1541	0.15406439	1843	sp|Q99714|HCD2_HUMAN	yes	yes	0	0	0	1	0						1	1	1	1	53.054	53.054	3	3.5263E-05	15347	20190902_JH_WT_Ubi_3	100.07	56.276	6106100	0	0	0	0	0	579790	1038000	2322400	2166000			5614	1843	4944	15890;15891;15892;15893	16697;16698;16699;16700	16700			1019	4
VMTIPYQPMPASSPVICAGGQDR	2 Oxidation (M)	2506.1655	0.16545048	1341	sp|Q15365|PCBP1_HUMAN	yes	yes	0	0	0	2	0			1	1	1			1	1	38.553	38.553	3	3.6178E-22	10937	20190902_JH_WT_Ubi_3	147.75	108.55	17171000	0	0	3956100	1151900	1227400	0	0	5563900	5271500			5615	1341	4945	15894;15895;15896;15897;15898	16701;16702;16703;16704;16705;16706	16706			843;844	6
VMYTPMAPGNYLISVK	Oxidation (M)	1798.8998	0.89976395	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	1	0							1			42.31	42.31	2	0.011731	11132	20190902_JH_MUT_Ubi_3	69.451	30.303	0	0	0	0	0	0	0	0	0	0			5616	282	4946	15899	16707	16707			126	1
VNAAMNGQLPFAVVGSMDEVKVGNKMVK	2 Oxidation (M);3 Deamidation (NQ)	2967.4392	0.43916573	2085	sp|Q9P0V9-3|SEP10_HUMAN;sp|Q9P0V9|SEP10_HUMAN;sp|Q9P0V9-2|SEP10_HUMAN	yes	no	0	3	0	2	2			1							54.999	54.999	3	0.00014545	15791	20190821_JH_WT_Ubi	70.391	27.193	8333600	0	0	8333600	0	0	0	0	0	0			5617	2085	4947	15900	16708	16708	663;664;1285		1113;1114	1
VNDGVCDCCDGTDEYNSGVICENTCK	Unmodified	3040.1249	0.12492017	552	sp|P14314-2|GLU2B_HUMAN;sp|P14314|GLU2B_HUMAN	yes	no	0	0	0	0	0								1		33.927	33.927	3	6.9538E-07	9761	20190902_JH_WT_Ubi_2	92.363	82.286	2166100	0	0	0	0	0	0	0	2166100	0			5618	552	4948	15901	16709	16709				1
VNFSEEGETEEDDQDSSHSSVTTVK	Unmodified	2755.158	0.15803596	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN;sp|Q5JTV8-2|TOIP1_HUMAN	yes	no	0	0	0	0	0									1	28.405	28.405	3	0.0010729	7531	20190902_JH_WT_Ubi_3	63.376	40.083	2729900	0	0	0	0	0	0	0	0	2729900			5619	1430	4949	15902	16710	16710				1
VNFSEEGETEEDDQDSSHSSVTTVKAR	GlyGly (K)	3096.3392	0.33918823	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN;sp|Q5JTV8-2|TOIP1_HUMAN	yes	no	0	0	1	0	1	1	1	1				1	1		26.728	26.728	3;4	6.8158E-05	4763	20190821_JH_MUT_Ubi	78.428	57.163	28236000	8106900	2914000	1654000	0	0	0	1751300	13810000	0			5620	1430	4950	15903;15904;15905;15906;15907	16711;16712;16713;16714;16715	16712		1449		5
VNGDASPAAAESGAKEELQANGSAPAADK	GlyGly (K);2 Deamidation (NQ)	2841.2901	0.29005319	718	sp|P29966|MARCS_HUMAN	yes	yes	0	2	1	0	1			1							31.23	31.23	3	0.012411	6703	20190821_JH_WT_Ubi	55.998	28.094	0	0	0	0	0	0	0	0	0	0			5621	718	4951	15908	16716	16716	252;255	697;702		1
VNHEPEPAGGATPGATLPK	Unmodified	1841.9272	0.92717599	131	sp|O00499-9|BIN1_HUMAN;sp|O00499-10|BIN1_HUMAN;sp|O00499-7|BIN1_HUMAN;sp|O00499-8|BIN1_HUMAN;sp|O00499-4|BIN1_HUMAN;sp|O00499-6|BIN1_HUMAN;sp|O00499-11|BIN1_HUMAN;sp|O00499-3|BIN1_HUMAN;sp|O00499-2|BIN1_HUMAN;sp|O00499-5|BIN1_HUMAN;sp|O00499|BIN1_HUMAN	yes	no	0	0	0	0	0			1							26.25	26.25	3	0.033471	5218	20190821_JH_WT_Ubi	39.244	5.9712	1673600	0	0	1673600	0	0	0	0	0	0			5622	131	4952	15909	16717	16717				1
VNIAFNYDMPEDSDTYLHR	Oxidation (M)	2315.0165	0.016461285	1264	sp|Q13838|DX39B_HUMAN;sp|Q13838-2|DX39B_HUMAN	yes	no	0	0	0	1	0			1					1		39.016	39.016	3	0.0086599	11519	20190902_JH_WT_Ubi_2	82.707	58.113	3121200	0	0	3121200	0	0	0	0	0	0			5623	1264	4953	15910;15911	16718;16719	16719			786	2
VNICIQQEIIKK	2 Deamidation (NQ)	1486.8065	0.8065155	1893	sp|Q9BX26|SYCP2_HUMAN	yes	yes	0	2	0	0	1						1				23.038	23.038	3	0.023464	5129	20190902_JH_MUT_Ubi_2	58.676	18.087	4115800	0	0	0	0	0	4115800	0	0	0			5624	1893	4954	15912	16720	16720	599;1225;1226			0
VNNASLIGLGYTQTLRPGVK	Unmodified	2100.1691	0.1691376	2202	sp|Q9Y277|VDAC3_HUMAN;sp|Q9Y277-2|VDAC3_HUMAN	yes	no	0	0	0	0	1			1			1	1	1	1	38.046	38.046	3	1.287E-08	9233	20190821_JH_WT_Ubi	127.32	82.323	114300000	0	0	43566000	0	0	7472100	6270900	23932000	33061000			5625	2202	4955	15913;15914;15915;15916;15917	16721;16722;16723;16724;16725	16723				5
VNNSSLIGLGYTQTLKPGIK	Unmodified	2102.1736	0.17355427	640	sp|P21796|VDAC1_HUMAN	yes	yes	0	0	0	0	1				1						38.037	38.037	3	0.0004068	9411	20190902_JH_EV_Ubi_2	93.495	74.736	15026000	0	0	0	15026000	0	0	0	0	0			5626	640	4956	15918	16726	16726				1
VNNSSLIGVGYTQTLRPGVK	Unmodified	2102.1484	0.14840216	847	sp|P45880-2|VDAC2_HUMAN;sp|P45880|VDAC2_HUMAN;sp|P45880-1|VDAC2_HUMAN	yes	no	0	0	0	0	1	1		1							35.568	35.568	3	4.104E-05	8154	20190821_JH_WT_Ubi	109.04	54.031	34017000	6601100	0	27416000	0	0	0	0	0	0			5627	847	4957	15919;15920	16727;16728	16728				2
VNPTVFFDIAVDGEPLGR	Unmodified	1944.9945	0.99452728	1072	sp|P62937|PPIA_HUMAN	yes	yes	0	0	0	0	0		1	2			1		1	1	53.956	53.956	2;3	2.0147E-27	15391	20190821_JH_WT_Ubi	181.86	139.62	81176000	0	10528000	57894000	0	0	3069400	0	6047900	3636900			5628	1072	4958	15921;15922;15923;15924;15925;15926	16729;16730;16731;16732;16733;16734	16731				5
VNQWTTNVVEQTLSQLTKLGK	GlyGly (K)	2500.3286	0.32855137	1081	sp|P63172|DYLT1_HUMAN	yes	yes	0	0	1	0	1			1							51.925	51.925	3	0.022504	14656	20190821_JH_WT_Ubi	58.997	26.072	2291900	0	0	2291900	0	0	0	0	0	0			5629	1081	4959	15927	16735	16735		1073;1074		0
VNVDIINFGEEEVNTEK	Unmodified	1947.9426	0.94255129	971;73	sp|A2A3N6|PIPSL_HUMAN;sp|P55036|PSMD4_HUMAN;sp|P55036-2|PSMD4_HUMAN	no	no	0	0	0	0	0									1	44.599	44.599	2	1.8052E-05	13010	20190902_JH_WT_Ubi_3	128.95	60.882	0	0	0	0	0	0	0	0	0	0			5630	73;971	4960	15928	16736	16736				1
VNVEAPDVNLEGLGGKLK	GlyGly (K)	1965.0531	0.053104788	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			39.101	39.101	3	0.000379	9922	20190821_JH_EV_Ubi	91.401	54.309	14757000	3025600	2534300	0	2052000	1468800	3224000	2452700	0	0			5631	1190	4961	15929;15930;15931;15932;15933;15934	16737;16738;16739;16740;16741;16742	16737		1258;1259		6
VNVHGIFSVSSASLVEVHK	Unmodified	2008.0742	0.074174581	767	sp|P34932|HSP74_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1	1	36.994	36.994	4	8.9022E-06	8818	20190821_JH_WT_Ubi	109.67	75.721	97125000	13536000	6841400	40731000	0	0	8544200	4814300	11963000	10696000			5632	767	4962	15935;15936;15937;15938;15939;15940;15941	16743;16744;16745;16746;16747;16748;16749	16747				7
VNVNLLIFLLNKK	Unmodified	1526.9548	0.95483471	863;1556	sp|P46940|IQGA1_HUMAN;sp|Q86VI3|IQGA3_HUMAN	no	no	0	0	0	0	1			1							49.405	49.405	3	0.026077	13770	20190821_JH_WT_Ubi	68.786	46.73	742770	0	0	742770	0	0	0	0	0	0			5633	863;1556	4963	15942	16750	16750				1
VNVTVDYIRPASPATETVPAFSER	Unmodified	2618.334	0.33403068	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	0	1	1	1	1	1	1		1	1	1	40.665	40.665	3	6.1885E-30	10526	20190821_JH_EV_Ubi	167.34	128.25	54878000	6666300	2930100	23663000	2263700	2567100	0	2497000	7096300	7194500			5634	1518	4964	15943;15944;15945;15946;15947;15948;15949;15950	16751;16752;16753;16754;16755;16756;16757;16758;16759	16751				9
VNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNR	Oxidation (M);Deamidation (NQ)	3872.9248	0.92481609	87	sp|P30046-2|DOPD_HUMAN;sp|P30046|DOPD_HUMAN;sp|A6NHG4|DDTL_HUMAN	yes	no	0	1	0	1	1		1								46.654	46.654	3	2.1758E-05	12097	20190821_JH_MUT_Ubi	66.959	45.034	599360	0	599360	0	0	0	0	0	0	0			5635	87	4965	15951	16760	16760	33		44	1
VPAATSAIITNDGIGINPAQTAGNVFLK	Unmodified	2752.4759	0.47594389	1031	sp|P61960|UFM1_HUMAN;sp|P61960-2|UFM1_HUMAN	yes	no	0	0	0	0	0			1					1	1	49.89	49.89	3	0.00028009	15002	20190902_JH_WT_Ubi_2	66.012	38.738	4284100	0	0	2223800	0	0	0	0	1308100	752260			5636	1031	4966	15952;15953;15954	16761;16762;16763	16762				2
VPADTEVVCAPPTAYIDFAR	Unmodified	2191.062	0.061954915	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN	yes	no	0	0	0	0	0		1				1	1			46.805	46.805	3	0.0014419	12260	20190821_JH_MUT_Ubi	71.929	30.962	5035300	0	1392500	0	0	0	1901800	1741100	0	0			5637	997	4967	15955;15956;15957	16764;16765;16766	16764				3
VPAINVNDSVTKSK	GlyGly (K)	1584.8471	0.84713476	665	sp|P23526-2|SAHH_HUMAN;sp|P23526|SAHH_HUMAN	yes	no	0	0	1	0	1		1								27.104	27.104	3	0.0015399	4811	20190821_JH_MUT_Ubi	98.582	53.325	890720	0	890720	0	0	0	0	0	0	0			5638	665	4968	15958	16767	16767		636		1
VPATLQVLQTLPEENYQVLR	Unmodified	2310.2583	0.25834654	1180	sp|Q07960|RHG01_HUMAN	yes	yes	0	0	0	0	0								1		49.918	49.918	3	0.0054781	14953	20190902_JH_WT_Ubi_2	60.618	21.703	910120	0	0	0	0	0	0	0	910120	0			5639	1180	4969	15959	16768	16768				1
VPEVPTAPATDAAPKR	GlyGly (K)	1732.9108	0.91079765	2125	sp|Q9UHD8-3|SEPT9_HUMAN;sp|Q9UHD8-7|SEPT9_HUMAN;sp|Q9UHD8-2|SEPT9_HUMAN;sp|Q9UHD8-5|SEPT9_HUMAN;sp|Q9UHD8|SEPT9_HUMAN	yes	no	0	0	1	0	1		1				1	1			27.782	27.782	3	0.0079997	6192	20190902_JH_MUT_Ubi_3	71.692	41.466	5903900	0	1075700	0	0	0	1417900	3410300	0	0			5640	2125	4970	15960;15961;15962	16769;16770;16771;16772	16772		1995		4
VPFIHVGNQVVSELGPIVQFVK	Unmodified	2405.3471	0.34710196	289	sp|O75431-2|MTX2_HUMAN;sp|O75431|MTX2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	51.64	51.64	3	1.8616E-11	13771	20190821_JH_MUT_Ubi	126.43	102.99	14228000	0	3193400	7398100	0	0	336870	814090	676600	1808900			5641	289	4971	15963;15964;15965;15966;15967;15968	16773;16774;16775;16776;16777;16778	16773				6
VPGIDATTKLNVGAPDVTLR	GlyGly (K)	2150.1695	0.16953153	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1		1								40.458	40.458	3	0.0038116	9684	20190821_JH_MUT_Ubi	66.606	40.611	1579900	0	1579900	0	0	0	0	0	0	0			5642	1190	4972	15969	16779	16779		1225		1
VPHVALQALTLLGACVANCGK	Unmodified	2191.1606	0.16056352	305	sp|O75886-2|STAM2_HUMAN;sp|O75886|STAM2_HUMAN	yes	no	0	0	0	0	0		1	1							48.203	48.203	3	4.0491E-06	13252	20190821_JH_WT_Ubi	96.447	72.647	3092600	0	563110	2529500	0	0	0	0	0	0			5643	305	4973	15970;15971	16780;16781	16781				2
VPIPWVSGTSASTPVFGGILSLINEHR	Unmodified	2833.5127	0.51266374	152	sp|O14773-2|TPP1_HUMAN;sp|O14773|TPP1_HUMAN	yes	no	0	0	0	0	0			1					1		55.215	55.215	3	1.0664E-26	16398	20190902_JH_WT_Ubi_2	151.23	131.53	39320000	0	0	20507000	0	0	0	0	18813000	0			5644	152	4974	15972;15973	16782;16783	16783				2
VPNCNVVPHFNKIQDFNDTFYR	GlyGly (K)	2837.3344	0.3343818	1669	sp|Q8TBC4-2|UBA3_HUMAN;sp|Q8TBC4|UBA3_HUMAN	yes	no	0	0	1	0	1	1	1	1		1	1	1	1		39.263	39.263	4	9.0187E-05	9351	20190821_JH_MUT_Ubi	84.436	59.791	49949000	4241500	9125200	14210000	0	1481400	7703800	6397800	6789200	0			5645	1669	4975	15974;15975;15976;15977;15978;15979;15980	16784;16785;16786;16787;16788;16789;16790	16786		1668		7
VPPFTFHVK	Unmodified	1070.5913	0.59130141	1476	sp|Q6NZI2|CAVN1_HUMAN;sp|Q6NZI2-2|CAVN1_HUMAN;sp|Q6NZI2-3|CAVN1_HUMAN	yes	no	0	0	0	0	0			1					1	1	32.917	32.917	3	0.010195	8931	20190902_JH_WT_Ubi_3	85.862	57.755	166600000	0	0	47325000	0	0	0	0	60104000	59171000			5646	1476	4976	15981;15982;15983	16791;16792;16793	16793				3
VPSVSSSALVSSLHLLK	Unmodified	1722.988	0.98798534	2254	sp|Q9Y678|COPG1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1				42.888	42.888	3	0.00091716	11367	20190821_JH_EV_Ubi	85.28	58.748	9969900	1754800	1636300	3310500	1041700	0	2226500	0	0	0			5647	2254	4977	15984;15985;15986;15987;15988	16794;16795;16796;16797;16798	16794				5
VPTANVSVVDLTCR	Unmodified	1529.7872	0.78717704	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0								1		38.566	38.566	3	0.028063	11351	20190902_JH_WT_Ubi_2	60.55	28.842	0	0	0	0	0	0	0	0	0	0			5648	407	4978	15989	16799	16799				1
VPTQPHAPIPTFGQTIQTTVDRGLLFFAENGDR	Unmodified	3622.8532	0.85322977	1387	sp|Q16787-4|LAMA3_HUMAN;sp|Q16787-1|LAMA3_HUMAN;sp|Q16787-3|LAMA3_HUMAN;sp|Q16787|LAMA3_HUMAN	yes	no	0	0	0	0	1	1									44.973	44.973	5	0.036097	12074	20190821_JH_EV_Ubi	18.949	2.8079	1196900	1196900	0	0	0	0	0	0	0	0			5649	1387	4979	15990	16800	16800				1
VPVLGSLLNLPGIR	Unmodified	1446.8922	0.89223446	2222	sp|Q9Y3E0|GOT1B_HUMAN	yes	yes	0	0	0	0	0	1									53.412	53.412	3	0.013778	14316	20190821_JH_EV_Ubi	63.966	36.538	626750	626750	0	0	0	0	0	0	0	0			5650	2222	4980	15991	16801	16801				1
VQANLGAPDINIEGLDAKVK	GlyGly (K)	2178.1644	0.16444615	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1	1	1	1		1	40.029	40.029	3	7.404E-49	10231	20190902_JH_MUT_Ubi_3	197.1	160.33	72654000	15857000	12140000	11508000	6284500	4730100	7958500	8802900	0	5373800			5651	1190	4981	15992;15993;15994;15995;15996;15997;15998;15999	16802;16803;16804;16805;16806;16807;16808;16809	16807		1257;1260		8
VQAQAEQGQQELKNLR	GlyGly (K);2 Deamidation (NQ)	1954.9708	0.97083172	1886	sp|Q9BW19|KIFC1_HUMAN	yes	yes	0	2	1	0	1				1						28.46	28.46	3	0.031993	6424	20190902_JH_EV_Ubi_2	59.68	26.372	19955000	0	0	0	19955000	0	0	0	0	0			5652	1886	4982	16000	16810	16810	1221;1222;1223			1
VQAQHDYTATDTDELQLK	Unmodified	2074.9807	0.98072771	131	sp|O00499-9|BIN1_HUMAN;sp|O00499-10|BIN1_HUMAN;sp|O00499-7|BIN1_HUMAN;sp|O00499-8|BIN1_HUMAN;sp|O00499-4|BIN1_HUMAN;sp|O00499-6|BIN1_HUMAN;sp|O00499-11|BIN1_HUMAN;sp|O00499-3|BIN1_HUMAN;sp|O00499-2|BIN1_HUMAN;sp|O00499-5|BIN1_HUMAN;sp|O00499|BIN1_HUMAN	yes	no	0	0	0	0	0			1							30.554	30.554	3	0.0041232	6469	20190821_JH_WT_Ubi	67.299	12.488	2468500	0	0	2468500	0	0	0	0	0	0			5653	131	4983	16001	16811	16811				1
VQASLAANTFTITGHAETK	Unmodified	1959.0062	0.0061545955	628	sp|P20290-2|BTF3_HUMAN;sp|P20290|BTF3_HUMAN	yes	no	0	0	0	0	0	1	1	1							33.635	33.635	3	7.6886E-05	7275	20190821_JH_MUT_Ubi	98.062	55.745	16283000	0	4372000	11910000	0	0	0	0	0	0			5654	628	4984	16002;16003;16004	16812;16813;16814	16813				3
VQDDEVGDGTTSVTVLAAELLR	Unmodified	2287.1543	0.15433498	1105	sp|P78371|TCPB_HUMAN;sp|P78371-2|TCPB_HUMAN	yes	no	0	0	0	0	0									1	54.642	54.642	3	2.8636E-16	15698	20190902_JH_WT_Ubi_3	143.4	87.85	1326600	0	0	0	0	0	0	0	0	1326600			5655	1105	4985	16005	16815	16815				1
VQEAESPVFKELPGAK	GlyGly (K)	1841.9523	0.95232811	1184	sp|Q08357|S20A2_HUMAN	yes	yes	0	0	1	0	1	1	1			1	1	1	1		33.235	33.235	3	0.00071799	7207	20190821_JH_MUT_Ubi	96.707	48.241	33209000	7826800	4349200	0	0	6593700	6329700	6227800	1881700	0			5656	1184	4986	16006;16007;16008;16009;16010;16011	16816;16817;16818;16819;16820;16821	16818		1177;1179		6
VQEKCQLEINFNTLQTK	GlyGly (K)	2206.1052	0.10521671	214;537	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|P35609-2|ACTN2_HUMAN;sp|P35609|ACTN2_HUMAN;sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	no	no	0	0	1	0	1	1									36.34	36.34	3	3.4315E-10	8865	20190821_JH_EV_Ubi	140.68	110.14	4142900	4142900	0	0	0	0	0	0	0	0			5657	214;537	4987	16012	16822	16822		196		1
VQEKCQLEINFNTLQTK	GlyGly (K);2 Deamidation (NQ)	2208.0732	0.073247883	214;537	sp|O43707|ACTN4_HUMAN;sp|O43707-2|ACTN4_HUMAN;sp|P35609-2|ACTN2_HUMAN;sp|P35609|ACTN2_HUMAN;sp|P12814-2|ACTN1_HUMAN;sp|P12814|ACTN1_HUMAN;sp|P12814-3|ACTN1_HUMAN;sp|P12814-4|ACTN1_HUMAN	no	no	0	2	1	0	1		1								36.187	36.187	3	0.0011474	8243	20190821_JH_MUT_Ubi	100.69	57.706	12368000	0	12368000	0	0	0	0	0	0	0			5658	214;537	4987	16013	16823	16823	70;776	196		1
VQELEKQQVTILATPLPEESMK	Oxidation (M);GlyGly (K)	2640.368	0.36803292	1198	sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN	yes	no	0	0	1	1	1	1	1		1			1	1		38.507	38.507	3	6.389E-06	9700	20190902_JH_MUT_Ubi_3	95.361	55.046	4782900	0	1419500	0	1170300	0	0	2193100	0	0			5659	1198	4988	16014;16015;16016;16017;16018	16824;16825;16826;16827;16828	16827		1266	757	5
VQELEKQQVTILATPLPEESMK	GlyGly (K)	2624.3731	0.3731183	1198	sp|Q12846-2|STX4_HUMAN;sp|Q12846|STX4_HUMAN	yes	no	0	0	1	0	1		1								40.856	40.856	3	0.019117	9834	20190821_JH_MUT_Ubi	48.656	17.711	871540	0	871540	0	0	0	0	0	0	0			5660	1198	4988	16019	16829	16829		1266		1
VQEQVHTLLSQDQAQAAR	Unmodified	2021.029	0.029015303	1173	sp|Q07065|CKAP4_HUMAN	yes	yes	0	0	0	0	0			1					1	1	28.714	28.714	3	2.6411E-06	7571	20190902_JH_WT_Ubi_3	118.5	87.014	15853000	0	0	4921900	0	0	0	0	5311600	5619700			5661	1173	4989	16020;16021;16022	16830;16831;16832	16832				3
VQFLEQQNKVLETK	GlyGly (K)	1816.9683	0.96831253	11	sp|P19013|K2C4_HUMAN;CON__P19013	yes	no	0	0	1	0	1		1				1	1			31.563	31.563	3	0.0015702	7421	20190902_JH_MUT_Ubi_3	98.337	58.91	24979000	0	6271600	0	0	0	8270700	10437000	0	0		+	5662	11	4990	16023;16024;16025	16833;16834;16835	16835		34;35		3
VQGGALEDSQLVAGVAFK	Unmodified	1787.9418	0.94176342	1850	sp|Q99832|TCPH_HUMAN;sp|Q99832-4|TCPH_HUMAN;sp|Q99832-3|TCPH_HUMAN	yes	no	0	0	0	0	0							1			42.605	42.605	2	0.014052	11200	20190902_JH_MUT_Ubi_3	64.394	33.522	1374900	0	0	0	0	0	0	1374900	0	0			5663	1850	4991	16026	16836	16836				0
VQGPKGLVEPVDVVDNADGTQTVNYVPSR	GlyGly (K)	3166.5895	0.58947009	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	1	0	1		1					1			40.468	40.468	3	0.0016014	10383	20190902_JH_MUT_Ubi_3	55.587	27.848	3246400	0	1605000	0	0	0	0	1641400	0	0			5664	637	4992	16027;16028	16837;16838	16838		609		2
VQKASTEGVAIQGQQGTR	GlyGly (K)	1971.0134	0.013365238	1718	sp|Q92621|NU205_HUMAN	yes	yes	0	0	1	0	1	1	1								22.219	22.219	3	4.2338E-05	3514	20190821_JH_MUT_Ubi	108.49	52.51	1737700	1029500	708140	0	0	0	0	0	0	0			5665	1718	4993	16029;16030	16839;16840	16840		1710		2
VQLMRIRQQEDR	Oxidation (M);2 Deamidation (NQ)	1588.7991	0.79913871	1461	sp|Q66K66|TM198_HUMAN	yes	yes	0	2	0	1	2				1						26.625	26.625	3	0.030123	5943	20190902_JH_EV_Ubi_2	64.439	28.793	1138400	0	0	0	1138400	0	0	0	0	0			5666	1461	4994	16031	16841	16841	1078;1079		892	1
VQNATLAVANITNADSATR	Unmodified	1928.9916	0.99156716	693	sp|P27105|STOM_HUMAN	yes	yes	0	0	0	0	0					1					36.364	36.364	3	0.033313	8994	20190902_JH_EV_Ubi_3	39.349	6.0762	1208800	0	0	0	0	1208800	0	0	0	0			5667	693	4995	16032	16842	16842				1
VQPTHVIHLAAMVGGLFR	Oxidation (M)	1961.0669	0.066921134	1257	sp|Q13630|FCL_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	39.618	39.618	4	0.0045563	11283	20190902_JH_WT_Ubi_3	65.943	41.668	25410000	0	2002900	11770000	0	0	1394300	1844500	4474400	3924000			5668	1257	4996	16033;16034;16035;16036;16037;16038	16843;16844;16845;16846;16847;16848	16848			781	6
VQPTHVIHLAAMVGGLFR	Unmodified	1945.072	0.072006512	1257	sp|Q13630|FCL_HUMAN	yes	yes	0	0	0	0	0			1							44.072	44.072	4	0.0071027	11617	20190821_JH_WT_Ubi	59.634	42.556	4655000	0	0	4655000	0	0	0	0	0	0			5669	1257	4996	16039	16849	16849				1
VQQLQISVDQHGDNLK	Unmodified	1820.9381	0.93807503	11	sp|P19013|K2C4_HUMAN;CON__P19013	yes	no	0	0	0	0	0						1	1			30.33	30.33	3	0.0005617	7098	20190902_JH_MUT_Ubi_3	95.822	30.944	12339000	0	0	0	0	0	7165800	5173100	0	0		+	5670	11	4997	16040;16041	16850;16851	16851				2
VQQLVAKELGQTGTR	GlyGly (K)	1740.9482	0.94824579	2255	sp|Q9Y679|AUP1_HUMAN;sp|Q9Y679-2|AUP1_HUMAN;sp|Q9Y679-3|AUP1_HUMAN	yes	no	0	0	1	0	1		1	1			1		1		28.391	28.391	3	0.0057661	5785	20190821_JH_WT_Ubi	75.445	37.424	10335000	0	1406300	3474900	0	0	1430700	0	4023400	0			5671	2255	4998	16042;16043;16044;16045	16852;16853;16854;16855	16854		2092		4
VQSDGQIVLVDDWIK	Deamidation (NQ)	1714.8778	0.87776618	1182	sp|Q08211|DHX9_HUMAN;sp|Q08211-2|DHX9_HUMAN	yes	no	0	1	0	0	0	1									47.841	47.841	2	0.013913	13009	20190821_JH_EV_Ubi	73.466	33.886	0	0	0	0	0	0	0	0	0	0			5672	1182	4999	16046	16856	16856	1005			1
VQVTEAKADGALTQEEK	GlyGly (K);Deamidation (NQ)	1930.9484	0.94836495	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN	yes	no	0	1	1	0	1				1		1				26.642	26.642	3	0.0050236	6167	20190902_JH_MUT_Ubi_2	89.877	53.684	7358800	0	0	0	4022500	0	3336300	0	0	0			5673	186	5000	16047;16048	16857;16858	16858	773	164		2
VQVTEAKADGALTQEEK	GlyGly (K)	1929.9643	0.96434936	186	sp|O15438|MRP3_HUMAN;sp|O15438-4|MRP3_HUMAN;sp|O15438-2|MRP3_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1			26.161	26.161	3	4.2315E-31	5196	20190821_JH_WT_Ubi	179.66	128.39	220120000	0	42497000	0	0	74167000	37902000	65551000	0	0			5674	186	5000	16049;16050;16051;16052;16053	16859;16860;16861;16862;16863	16863		164		5
VRQEESEQIKTLNNK	GlyGly (K)	1928.9916	0.99156716	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	0	1	0	2		1	1				1	1	1	20.206	20.206	3	1.2239E-05	3150	20190821_JH_MUT_Ubi	134.4	79.295	10523000	0	548700	3390100	0	0	0	1538900	1676300	3368600		+	5675	8;19	5001	16054;16055;16056;16057;16058	16864;16865;16866;16867;16868	16864		29;30		5
VRQEESEQIKTLNNK	GlyGly (K);Deamidation (NQ)	1929.9756	0.97558275	19;8	CON__P08729;sp|P08729|K2C7_HUMAN;CON__Q3KNV1	no	no	0	1	1	0	2			1				1			20.844	20.844	3;4	0.028583	4401	20190902_JH_MUT_Ubi_3	82.483	31.64	2709400	0	0	1847300	0	0	0	862080	0	0		+	5676	8;19	5001	16059;16060	16869;16870	16869	7	29;30		2
VSAPGVQGDVKGPQVALK	GlyGly (K)	1863.0214	0.021410729	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	1	0	1						1	1			30.353	30.353	3	0.0017318	7097	20190902_JH_MUT_Ubi_3	75.998	45.037	10963000	0	0	0	0	0	6770200	4192900	0	0			5677	1190	5002	16061;16062	16871;16872	16872		1198;1261		1
VSAVNCAGQGEPIEMNEPVQAK	3 Deamidation (NQ)	2330.0406	0.040627125	1705	sp|Q8WZ42-5|TITIN_HUMAN;sp|Q8WZ42-11|TITIN_HUMAN;sp|Q8WZ42-4|TITIN_HUMAN;sp|Q8WZ42-7|TITIN_HUMAN;sp|Q8WZ42-2|TITIN_HUMAN;sp|Q8WZ42|TITIN_HUMAN;sp|Q8WZ42-8|TITIN_HUMAN;sp|Q8WZ42-13|TITIN_HUMAN;sp|Q8WZ42-12|TITIN_HUMAN;sp|Q8WZ42-3|TITIN_HUMAN;sp|Q8WZ42-10|TITIN_HUMAN;sp|Q8WZ42-9|TITIN_HUMAN	yes	no	0	3	0	0	0									1	57.072	57.072	3	0.011307	16053	20190902_JH_WT_Ubi_3	51.348	12.111	1720700	0	0	0	0	0	0	0	0	1720700			5678	1705	5003	16063	16873	16873	557;1171;1172			1
VSDESLSKVQEAESPVFK	GlyGly (K)	2092.0324	0.032428925	1184	sp|Q08357|S20A2_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1		1	33.939	33.939	3	3.4951E-20	8193	20190902_JH_EV_Ubi_2	165.58	122.21	29139000	5642500	2280300	0	5160200	4339500	5252400	3389600	0	3074000			5679	1184	5004	16064;16065;16066;16067;16068;16069;16070	16874;16875;16876;16877;16878;16879;16880	16875		1179;1180		7
VSDMSSLVLSPR	Oxidation (M)	1305.6599	0.65985126	25		yes	yes	0	0	0	1	0		1	1							26.345	26.345	3	0.015636	5183	20190821_JH_WT_Ubi	72.152	31.27	3806400	0	869670	2936700	0	0	0	0	0	0	+		5680	25	5005	16071;16072	16881;16882	16882			26	2
VSDSISAQYPVVDHEFDAVVVGAGGAGLR	Unmodified	2914.4461	0.44610032	739	sp|P31040|SDHA_HUMAN;sp|P31040-2|SDHA_HUMAN;sp|P31040-3|SDHA_HUMAN	yes	no	0	0	0	0	0			1						1	46.559	46.559	3	7.1464E-21	12679	20190821_JH_WT_Ubi	125.37	80.784	8059100	0	0	5481800	0	0	0	0	0	2577200			5681	739	5006	16073;16074	16883;16884	16883				2
VSEEAESQQQWDTSKGEQVSQNGLPAEQGSPR	GlyGly (K);Deamidation (NQ)	3600.6201	0.62005453	1129;1130	sp|Q01082|SPTB2_HUMAN;sp|Q01082-2|SPTB2_HUMAN;sp|Q01082-3|SPTB2_HUMAN	no	no	0	1	1	0	1		1				1				31.929	31.929	3	3.737E-11	6634	20190821_JH_MUT_Ubi	110.03	92.165	2631600	0	1404300	0	0	0	1227300	0	0	0			5682	1129;1130	5007	16075;16076	16885;16886	16885	367	1122		2
VSETEYSALEQSTK	GlyGly (K)	1684.7792	0.77917435	675	sp|P25106|ACKR3_HUMAN	yes	yes	0	0	1	0	0			1							30.211	30.211	2	2.2877E-60	6369	20190821_JH_WT_Ubi	223.08	119.2	2296700	0	0	2296700	0	0	0	0	0	0			5683	675	5008	16077	16887	16887		658		1
VSFSYAGLSGDDPDLGPAHVVTVIAR	Unmodified	2642.334	0.33403068	1876	sp|Q9BTV4|TMM43_HUMAN	yes	yes	0	0	0	0	0	1		1		1	1	1	1	1	46.737	46.737	3	1.1531E-13	12785	20190821_JH_EV_Ubi	122.65	96.851	24966000	4287200	0	9256200	0	723990	1580500	1359100	3790300	3968900			5684	1876	5009	16078;16079;16080;16081;16082;16083;16084	16888;16889;16890;16891;16892;16893;16894;16895	16888				8
VSGDYGHPVYIVQEMPPQSPANIYYK	Oxidation (M)	2967.4113	0.41129472	1115	sp|P98172|EFNB1_HUMAN;sp|P52799|EFNB2_HUMAN	yes	no	0	0	0	1	0									1	38.864	38.864	3	0.00063741	11116	20190902_JH_WT_Ubi_3	68.445	34.78	1378100	0	0	0	0	0	0	0	0	1378100			5685	1115	5010	16085	16896	16896			690	1
VSGDYGHPVYIVQEMPPQSPANIYYKV	Oxidation (M);GlyGly (K)	3180.5226	0.52263608	1115	sp|P98172|EFNB1_HUMAN;sp|P52799|EFNB2_HUMAN	yes	no	0	0	1	1	1	1	1	1	1	1	1	1	1	1	41.656	41.656	3	8.2964E-16	10792	20190902_JH_MUT_Ubi_3	125.37	90.211	61010000	4843000	4427200	16155000	2423400	2641300	2755400	4950400	10046000	12768000			5686	1115	5011	16086;16087;16088;16089;16090;16091;16092;16093;16094	16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907	16902		1111	690	11
VSGDYGHPVYIVQEMPPQSPANIYYKV	GlyGly (K)	3164.5277	0.52772146	1115	sp|P98172|EFNB1_HUMAN;sp|P52799|EFNB2_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1		44.094	44.094	3	5.2037E-07	13257	20190902_JH_WT_Ubi_2	95.209	66.91	14473000	1077400	2510200	6638500	0	0	1058400	1539200	1649200	0			5687	1115	5011	16095;16096;16097;16098;16099;16100	16908;16909;16910;16911;16912;16913;16914;16915;16916	16915		1111		9
VSGDYGHPVYIVQEMPPQSPANIYYKV	Oxidation (M);GlyGly (K);Deamidation (NQ)	3181.5067	0.50665167	1115	sp|P98172|EFNB1_HUMAN;sp|P52799|EFNB2_HUMAN	yes	no	0	1	1	1	1									1	42.243	42.243	3	0.0069058	12262	20190902_JH_WT_Ubi_3	48.286	14.147	2191600	0	0	0	0	0	0	0	0	2191600			5688	1115	5011	16101	16917	16917	979	1111	690	1
VSHVSTGGGASLELLEGK	Unmodified	1739.9054	0.90537792	383	sp|P00558-2|PGK1_HUMAN;sp|P00558|PGK1_HUMAN;sp|P07205|PGK2_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1		1	32.697	32.697	3	9.577E-35	8243	20190902_JH_MUT_Ubi_2	193.77	143.3	153900000	30650000	24192000	0	15336000	25142000	35602000	22974000	0	0			5689	383	5012	16102;16103;16104;16105;16106;16107;16108;16109	16918;16919;16920;16921;16922;16923;16924;16925	16922				8
VSLLYSFDILKMGYGR	Oxidation (M);GlyGly (K)	1991.0186	0.018633537	23		yes	no	0	0	1	1	1			1							34.159	34.159	3	0.027962	7685	20190821_JH_WT_Ubi	56.147	22.84	5591400	0	0	5591400	0	0	0	0	0	0	+		5690	23	5013	16110	16926	16926		44	25	1
VSQGSKDPAEGDGAQPEETPR	GlyGly (K)	2268.0254	0.025446067	1304	sp|Q14697|GANAB_HUMAN	yes	yes	0	0	1	0	1								1		21.836	21.836	3	0.0037409	5597	20190902_JH_WT_Ubi_2	78.987	38.186	0	0	0	0	0	0	0	0	0	0			5691	1304	5014	16111	16927	16927		1366		1
VSQMAQYFEPLTLAAVGAASK	Oxidation (M)	2197.1089	0.10890511	2230	sp|Q9Y490|TLN1_HUMAN	yes	yes	0	0	0	1	0			1					1	1	47.97	47.97	3	0.00052683	14013	20190902_JH_WT_Ubi_3	75.057	49.234	3303500	0	0	1403000	0	0	0	0	693610	1206900			5692	2230	5015	16112;16113;16114	16928;16929;16930	16930			1154	2
VSVGAPDLSLEASEGSIK	Unmodified	1757.9047	0.90470922	1190	sp|Q09666|AHNK_HUMAN	yes	yes	0	0	0	0	0			1							40.029	40.029	2	0.017953	9929	20190821_JH_WT_Ubi	63.76	26.913	5770900	0	0	5770900	0	0	0	0	0	0			5693	1190	5016	16115	16931	16931				0
VSVHVIEGDHR	Unmodified	1246.6418	0.64183343	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0				1						20.791	20.791	3	0.02727	4355	20190902_JH_EV_Ubi_2	59.367	18.643	758100	0	0	0	758100	0	0	0	0	0			5694	881	5017	16116	16932	16932				1
VSVIQFLEAPIGDEDAEEAAAEKR	GlyGly (K)	2700.3243	0.32425385	1282	sp|Q14160-3|SCRIB_HUMAN;sp|Q14160|SCRIB_HUMAN;sp|Q14160-2|SCRIB_HUMAN	yes	no	0	0	1	0	1						1				47.583	47.583	3	4.202E-06	13788	20190902_JH_MUT_Ubi_2	87.793	51.114	996640	0	0	0	0	0	996640	0	0	0			5695	1282	5018	16117	16933	16933		1344		1
VSYGIGDEEHDQEGR	Unmodified	1689.7231	0.72305646	700	sp|P27695|APEX1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	25.065	25.065	3	0.0085288	4852	20190821_JH_WT_Ubi	68.034	50.753	17575000	0	0	4637600	0	0	0	0	7124400	5813200			5696	700	5019	16118;16119;16120	16934;16935;16936	16934				3
VTASGPGLSSYGVPASLPVDFAIDAR	Unmodified	2546.3017	0.30166791	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	52.479	52.479	3	3.9787E-20	14763	20190902_JH_MUT_Ubi_2	138	80.194	33518000	2416100	4975500	8183600	568860	1074500	3852000	3373300	4941400	4132700			5697	282	5020	16121;16122;16123;16124;16125;16126;16127;16128;16129	16937;16938;16939;16940;16941;16942;16943;16944;16945	16941				9
VTEGLTDVILYHQPDDK	Unmodified	1941.9684	0.96837211	252	sp|O60506-4|HNRPQ_HUMAN;sp|O60506-3|HNRPQ_HUMAN;sp|O60506-2|HNRPQ_HUMAN;sp|O60506|HNRPQ_HUMAN;sp|O60506-5|HNRPQ_HUMAN	yes	no	0	0	0	0	0								1	1	38.945	38.945	3	0.0018019	11061	20190902_JH_WT_Ubi_3	77.24	40.148	12185000	0	0	0	0	0	0	0	4975200	7209700			5698	252	5021	16130;16131	16946;16947	16947				2
VTELESVDKSAGQVAR	GlyGly (K)	1801.917	0.91700524	1214	sp|Q13114-2|TRAF3_HUMAN;sp|Q13114|TRAF3_HUMAN	yes	no	0	0	1	0	1		1		1		1		1		27.899	27.899	3	0.0026344	5161	20190821_JH_MUT_Ubi	81.703	33.171	8895800	0	1961100	0	1671600	0	2308400	0	2954800	0			5699	1214	5022	16132;16133;16134;16135	16948;16949;16950;16951	16949		1280		4
VTFNSALAQKEAK	GlyGly (K)	1519.7995	0.79945628	2205	sp|Q9Y287-2|ITM2B_HUMAN;sp|Q9Y287|ITM2B_HUMAN	yes	no	0	0	1	0	1		1	1			1	1	1	1	26.88	26.88	3	9.4016E-05	6209	20190902_JH_MUT_Ubi_2	127.78	96.779	38134000	0	3400300	6486100	0	0	8322000	4932900	10258000	4734400			5700	2205	5023	16136;16137;16138;16139;16140;16141	16952;16953;16954;16955;16956;16957	16953		2059;2060		6
VTFNSALAQKEAKK	2 GlyGly (K)	1761.9373	0.93734675	2205	sp|Q9Y287-2|ITM2B_HUMAN;sp|Q9Y287|ITM2B_HUMAN	yes	no	0	0	2	0	2									1	23.79	23.79	4	0.027957	6159	20190902_JH_WT_Ubi_3	59.796	32.767	6946200	0	0	0	0	0	0	0	0	6946200			5701	2205	5024	16142	16958	16958		2059;2060;2061		0
VTGEADVEFATHEDAVAAMSK	Oxidation (M)	2192.9896	0.98957783	748	sp|P31943|HNRH1_HUMAN	yes	yes	0	0	0	1	0			1							31.999	31.999	3	1.1195E-06	6955	20190821_JH_WT_Ubi	102.69	67.031	3356400	0	0	3356400	0	0	0	0	0	0			5702	748	5025	16143	16959	16959			469	1
VTHAVVTVPAYFNDAQR	Unmodified	1886.9639	0.96389585	517	sp|P11021|BIP_HUMAN	yes	yes	0	0	0	0	0			1	1	1	1	1	1	1	34.87	34.87	3	3.6725E-08	9150	20190902_JH_MUT_Ubi_2	130.95	91.207	173950000	0	0	46388000	7850600	11009000	16781000	16544000	35454000	39928000			5703	517	5026	16144;16145;16146;16147;16148;16149;16150	16960;16961;16962;16963;16964;16965;16966	16962				7
VTHAVVTVPAYFNDAQR	Deamidation (NQ)	1887.9479	0.94791144	517	sp|P11021|BIP_HUMAN	yes	yes	0	1	0	0	0								1	1	35.966	35.966	3	0.0011308	10141	20190902_JH_WT_Ubi_3	93.424	47.106	13633000	0	0	0	0	0	0	0	3471800	10161000			5704	517	5026	16151;16152	16967;16968	16968	200			2
VTHETSAHEGQTEAPSIDEK	Unmodified	2164.9873	0.98726965	570	sp|P15374|UCHL3_HUMAN	yes	yes	0	0	0	0	0			1						1	20.129	20.129	3	5.2312E-05	3683	20190821_JH_WT_Ubi	115.91	62.416	986970	0	0	0	0	0	0	0	0	986970			5705	570	5027	16153;16154	16969;16970	16969				2
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	0	0	0	0	1	1	1	1	1	1	1	1	1	52.142	52.142	3	3.3972E-72	14748	20190821_JH_WT_Ubi	220.64	180.62	753250000	90632000	119410000	127260000	43585000	33582000	120020000	87734000	50916000	80102000			5706	499;416	5028	16155;16156;16157;16158;16159;16160;16161;16162;16163	16971;16972;16973;16974;16975;16976;16977;16978;16979	16977				9
VTIAQGGVLPNIQAVLLPK	Deamidation (NQ)	1931.1455	0.14554861	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	1	0	0	0			1			1	1	1	1	53.112	53.112	2;3	6.3663E-48	14841	20190902_JH_MUT_Ubi_2	200.81	188.3	35590000	0	0	2467900	0	0	5185900	4415700	3918600	19602000			5707	499;416	5028	16164;16165;16166;16167;16168	16980;16981;16982;16983;16984	16980	144;822;823			3
VTIAQGGVLPNIQAVLLPKK	GlyGly (K)	2172.2994	0.29942349	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	0	1	0	1	2	4	3	1	1	5	6	1	2	46.501	46.501	3	3.2653E-31	13700	20190902_JH_WT_Ubi_2	180.62	158.43	41373000000	4350300000	15536000000	17891000000	830710000	1351400000	7914200	1398400000	3397200	3553300			5708	499;416	5029	16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193	16985;16986;16987;16988;16989;16990;16991;16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007;17008;17009;17010;17011;17012;17013;17014	17012		383;384		28
VTIAQGGVLPNIQAVLLPKK	Unmodified	2058.2565	0.25649604	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	0	0	0	1	1			1		1		1	1	46.347	46.347	3	0.0010481	13548	20190902_JH_WT_Ubi_3	78.228	52.153	31309000	1002200	0	0	716950	0	14353000	0	8246400	6990500			5709	499;416	5029	16194;16195;16196;16197;16198	17015;17016;17017;17018;17019	17019				5
VTIAQGGVLPNIQAVLLPKK	GlyGly (K);Deamidation (NQ)	2173.2834	0.28343908	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	1	1	0	1	1	2	1	2	3	3	3	2	4	47.565	47.565	3	6.4993E-39	12637	20190902_JH_MUT_Ubi_3	185.71	176.89	3029200000	8518000	61286000	70810000	62707000	161200000	917550000	674020000	243500000	829640000			5710	499;416	5029	16199;16200;16201;16202;16203;16204;16205;16206;16207;16208;16209;16210;16211;16212;16213;16214;16215;16216;16217;16218;16219	17020;17021;17022;17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048	17036	144;822;823	383;384		28
VTIAQGGVLPNIQAVLLPKK	GlyGly (K);2 Deamidation (NQ)	2174.2675	0.26745466	499;416	sp|Q99878|H2A1J_HUMAN;sp|Q96KK5|H2A1H_HUMAN;sp|Q9BTM1|H2AJ_HUMAN;sp|Q16777|H2A2C_HUMAN;sp|Q6FI13|H2A2A_HUMAN;sp|P20671|H2A1D_HUMAN;sp|P0C0S8|H2A1_HUMAN;sp|Q93077|H2A1C_HUMAN;sp|Q7L7L0|H2A3_HUMAN;sp|P04908|H2A1B_HUMAN	no	no	0	2	1	0	1				1	2		1	1	2	48.735	48.735	3	5.2404E-19	12770	20190902_JH_MUT_Ubi_3	157.7	144.86	78307000	0	0	0	1273500	4525300	0	17251000	14185000	41072000			5711	499;416	5029	16220;16221;16222;16223;16224;16225;16226	17049;17050;17051;17052;17053;17054;17055;17056;17057	17053	144;822;823	383;384		8
VTKAAGVNTTDK	2 GlyGly (K);Deamidation (NQ)	1432.7158	0.71578623	641	sp|P21802-16|FGFR2_HUMAN	yes	yes	0	1	2	0	1									1	35.022	35.022	3	0.0251	9819	20190902_JH_WT_Ubi_3	57.019	24.49	2764400	0	0	0	0	0	0	0	0	2764400			5712	641	5030	16227	17058	17058	226	613;614		0
VTNGAFTGEISPGMIK	Oxidation (M);Deamidation (NQ)	1637.7971	0.79707302	997	sp|P60174|TPIS_HUMAN;sp|P60174-1|TPIS_HUMAN	yes	no	0	1	0	1	0									1	36.515	36.515	2	0.0003114	10305	20190902_JH_WT_Ubi_3	101.45	49.611	9992500	0	0	0	0	0	0	0	0	9992500			5713	997	5031	16228	17059	17059	326		610	0
VTNSTELQHQLDK	GlyGly (K);Deamidation (NQ)	1626.7849	0.78492843	1326	sp|Q15075|EEA1_HUMAN	yes	yes	0	1	1	0	0		1								15.267	15.267	4	0.0297	2359	20190821_JH_MUT_Ubi	48.513	8.6982	192290	0	192290	0	0	0	0	0	0	0			5714	1326	5032	16229	17060	17060	425	1383		0
VTPNPDLLDLVQTADEKR	GlyGly (K)	2137.1015	0.10151154	1614	sp|Q8N3V7-3|SYNPO_HUMAN;sp|Q8N3V7-2|SYNPO_HUMAN;sp|Q8N3V7|SYNPO_HUMAN	yes	no	0	0	1	0	1					1					42.65	42.65	3	0.0054649	10819	20190902_JH_EV_Ubi_3	69.979	33.475	5305600	0	0	0	0	5305600	0	0	0	0			5715	1614	5033	16230	17061	17061		1613		1
VTQQGLKMVVPGLDGAQIPR	Oxidation (M);GlyGly (K)	2236.1998	0.1997858	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	1	1	1		1					1			37.539	37.539	3	7.0923E-05	9398	20190902_JH_MUT_Ubi_3	97.713	74.731	9198600	0	4710800	0	0	0	0	4487800	0	0			5716	881	5034	16231;16232	17062;17063	17063		859	557	2
VTSEELHYFVQNHFTSAR	Unmodified	2164.0338	0.033766329	655	sp|P22695|QCR2_HUMAN	yes	yes	0	0	0	0	0	1	1	1		1	1		1		35.603	35.603	3;4	1.536E-11	8639	20190821_JH_EV_Ubi	144.15	115.6	33532000	3120200	1106300	23023000	0	1737900	0	0	4544200	0			5717	655	5035	16233;16234;16235;16236;16237;16238	17064;17065;17066;17067;17068;17069	17064				6
VTSKSESQVTMLQR	Oxidation (M);GlyGly (K)	1722.857	0.85704752	935	sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN	yes	no	0	0	1	1	1	1	1	1		1	1	1	1	1	21.752	21.752	3	9.9488E-37	5535	20190902_JH_WT_Ubi_3	201.3	153.68	48568000	563130	1753800	5692700	0	1814200	3685800	3031800	15956000	16071000			5718	935	5036	16239;16240;16241;16242;16243;16244;16245;16246	17070;17071;17072;17073;17074;17075;17076;17077	17077		901	586	8
VTSKSESQVTMLQR	GlyGly (K)	1706.8621	0.8621329	935	sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN	yes	no	0	0	1	0	1							1		1	24.153	24.153	3	0.0022021	6294	20190902_JH_WT_Ubi_3	93.228	53.281	5410500	0	0	0	0	0	0	1135600	0	4274900			5719	935	5036	16247;16248	17078;17079	17079		901		2
VTSSEPPNPASSSKSEK	GlyGly (K)	1844.8752	0.8752	1712	sp|Q92575|UBXN4_HUMAN	yes	yes	0	0	1	0	1	1	1		1						19.308	19.308	3	0.010712	2941	20190821_JH_MUT_Ubi	62.861	17.847	6170200	1771500	830280	0	3568400	0	0	0	0	0			5720	1712	5037	16249;16250;16251	17080;17081;17082	17082		1707;1708		3
VTSVVFHPSQDLVFSASPDATIR	Unmodified	2472.2649	0.26488848	2174	sp|Q9UMS4|PRP19_HUMAN	yes	yes	0	0	0	0	0	1		1	1	1		1	1	1	42.745	42.745	3	1.5309E-09	11192	20190821_JH_WT_Ubi	121.14	73.234	28466000	2096300	0	10880000	1198000	2027000	0	1833800	4675500	5755900			5721	2174	5038	16252;16253;16254;16255;16256;16257;16258	17083;17084;17085;17086;17087;17088;17089	17087				7
VTSVVFHPSQDLVFSASPDATIR	Deamidation (NQ)	2473.2489	0.24890406	2174	sp|Q9UMS4|PRP19_HUMAN	yes	yes	0	1	0	0	0		1								43.182	43.182	3	0.0012449	10764	20190821_JH_MUT_Ubi	81.144	36.566	2984500	0	2984500	0	0	0	0	0	0	0			5722	2174	5038	16259	17090	17090	1313			1
VTTGSVPVSMATVIIHIPQYTK	Oxidation (M)	2357.2665	0.26646838	599	sp|P17301|ITA2_HUMAN	yes	yes	0	0	0	1	0				1						40.947	40.947	3	0.019817	10301	20190902_JH_EV_Ubi_2	47.016	23.569	6774200	0	0	0	6774200	0	0	0	0	0			5723	599	5039	16260	17091	17091			368	1
VTTGSVPVSMATVIIHIPQYTK	Unmodified	2341.2716	0.27155376	599	sp|P17301|ITA2_HUMAN	yes	yes	0	0	0	0	0			1						1	46.667	46.667	3	0.0069877	12754	20190821_JH_WT_Ubi	55.209	33.165	49005000	0	0	36683000	0	0	0	0	0	12322000			5724	599	5039	16261;16262	17092;17093	17092				2
VTTMDAELEFAIQPNTTGK	Oxidation (M)	2080.9987	0.99868596	686;568;773	sp|P26038|MOES_HUMAN;sp|P35241|RADI_HUMAN;sp|P35241-5|RADI_HUMAN;sp|P35241-3|RADI_HUMAN;sp|P15311|EZRI_HUMAN	no	no	0	0	0	1	0	1	1						1		41.175	41.175	2;3	0.00020609	9937	20190821_JH_MUT_Ubi	104.17	57.686	4981400	1279800	1227800	0	0	0	0	0	2473800	0			5725	686;773;568	5040	16263;16264;16265	17094;17095;17096	17095			357	3
VTVAGGVHISGLHTESAPR	Unmodified	1886.9963	0.99625861	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	0	0	0		1				1				28.407	28.407	3;4	0.0014187	6644	20190902_JH_MUT_Ubi_2	73.597	48.275	6818100	0	4134300	0	0	0	2683700	0	0	0			5726	881	5041	16266;16267	17097;17098	17098				2
VTVNTNMVDLNDYLQHILK	Oxidation (M)	2245.1413	0.14126787	949	sp|P53618|COPB_HUMAN	yes	yes	0	0	0	1	0	1	1		1		1				47.71	47.71	3	7.7016E-18	13017	20190821_JH_EV_Ubi	148.52	107.55	20335000	10128000	4743400	0	2414200	0	3049000	0	0	0			5727	949	5042	16268;16269;16270;16271	17099;17100;17101;17102	17099			593	4
VTVVCEPEDYVVVSTEMQSSESK	Oxidation (M)	2617.1775	0.17751454	746	sp|P31939-2|PUR9_HUMAN;sp|P31939|PUR9_HUMAN	yes	no	0	0	0	1	0								1	1	40.255	40.255	3	0.00075703	12001	20190902_JH_WT_Ubi_2	72.383	32.997	3764600	0	0	0	0	0	0	0	2316600	1448000			5728	746	5043	16272;16273	17103;17104	17103			464	2
VTWLAETTHALPIPVICVTYEHLITK	Unmodified	3004.6096	0.6096006	453	sp|P07814|SYEP_HUMAN	yes	yes	0	0	0	0	0		1	1							51.514	51.514	4	0.00091749	13655	20190821_JH_MUT_Ubi	62.193	35.112	21244000	0	7211900	14032000	0	0	0	0	0	0			5729	453	5044	16274;16275	17105;17106	17105				2
VTYHPDGPEGQAYDVDFTPPFR	Unmodified	2507.1394	0.13935361	1321	sp|Q15046|SYK_HUMAN;sp|Q15046-2|SYK_HUMAN	yes	no	0	0	0	0	0								1		42.071	42.071	3	0.00021223	12530	20190902_JH_WT_Ubi_2	79.467	43.633	3292400	0	0	0	0	0	0	0	3292400	0			5730	1321	5045	16276	17107	17107				1
VTYLVHNFEEGGGVAMGMYNQDK	2 Oxidation (M)	2590.1468	0.14682353	304	sp|O75874|IDHC_HUMAN	yes	yes	0	0	0	2	0			1					1	1	34.446	34.446	3	1.3144E-29	10023	20190902_JH_WT_Ubi_2	163.49	132.81	15795000	0	0	3210400	0	0	0	0	5416300	7168300			5731	304	5046	16277;16278;16279	17108;17109;17110	17109			139;140	3
VVAAPQRPGTEPQPEMPDTVLQSETLK	Oxidation (M)	2933.4804	0.48043692	331	sp|O95202|LETM1_HUMAN	yes	yes	0	0	0	1	1			1							34.559	34.559	3	0.017205	7838	20190821_JH_WT_Ubi	53.589	28.688	0	0	0	0	0	0	0	0	0	0			5732	331	5047	16280	17111	17111			155	1
VVASVHASISGSSASSTSSTPEVK	Unmodified	2274.1339	0.13393388	936	sp|P52594-2|AGFG1_HUMAN;sp|P52594-3|AGFG1_HUMAN;sp|P52594|AGFG1_HUMAN;sp|P52594-4|AGFG1_HUMAN	yes	no	0	0	0	0	0	1	1	1							27.286	27.286	3	0.0017112	5410	20190821_JH_EV_Ubi	62.442	29.754	6848800	3728000	870700	2250100	0	0	0	0	0	0			5733	936	5048	16281;16282;16283	17112;17113;17114	17112				3
VVDLMAHMASK	Oxidation (M)	1216.5944	0.59441423	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	1	0		1	1				1	1	1	24.54	24.54	3	0.023043	4749	20190821_JH_WT_Ubi	67.153	31.975	87640000	0	2597500	18216000	0	0	0	5536100	33369000	27921000			5734	407	5049	16284;16285;16286;16287;16288	17115;17116;17117;17118;17119	17117			203;204	5
VVDLMAHMASK	Unmodified	1200.5995	0.59949961	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0		1	1					1	1	30.495	30.495	3	0.011532	6099	20190821_JH_MUT_Ubi	76.843	49.54	62025000	0	2995800	17486000	0	0	0	0	24833000	16710000			5735	407	5049	16289;16290;16291;16292	17120;17121;17122;17123	17120				4
VVDLMAHMASK	2 Oxidation (M)	1232.5893	0.58932885	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	2	0			1			1				20.174	20.174	3	0.024501	3724	20190821_JH_WT_Ubi	63.694	31.476	83678000	0	0	51673000	0	0	32005000	0	0	0			5736	407	5049	16293;16294	17124;17125	17125			203;204	2
VVDYSQFQESDDADEDYGR	Unmodified	2236.9033	0.90326525	1933	sp|Q9H1E3|NUCKS_HUMAN	yes	yes	0	0	0	0	0				1						36.165	36.165	2	0.009229	8872	20190902_JH_EV_Ubi_2	71.531	43.978	648470	0	0	0	648470	0	0	0	0	0			5737	1933	5050	16295	17126	17126				0
VVETDPSPYCIVAPDTVIHCEGEPIK	Unmodified	2924.3936	0.39359574	974	sp|P55072|TERA_HUMAN	yes	yes	0	0	0	0	0			1					1		42.285	42.285	3	1.8012E-10	10858	20190821_JH_WT_Ubi	107.57	78.825	12733000	0	0	8057400	0	0	0	0	4675600	0			5738	974	5051	16296;16297	17127;17128	17127				2
VVGDRENGSDNLPSSAGSGDK	Deamidation (NQ)	2060.9247	0.92466939	202	sp|O43399|TPD54_HUMAN;sp|O43399-5|TPD54_HUMAN;sp|O43399-7|TPD54_HUMAN;sp|O43399-2|TPD54_HUMAN;sp|O43399-4|TPD54_HUMAN;sp|O43399-3|TPD54_HUMAN;sp|O43399-6|TPD54_HUMAN	yes	no	0	1	0	0	1								1		23.823	23.823	3	0.010478	6271	20190902_JH_WT_Ubi_2	66.76	29.21	3341900	0	0	0	0	0	0	0	3341900	0			5739	202	5052	16298	17129	17129	69			1
VVGFHVLGPNAGEVTQGFAAALK	Unmodified	2281.2219	0.22190145	1394	sp|Q16881-7|TRXR1_HUMAN;sp|Q16881-5|TRXR1_HUMAN;sp|Q16881-2|TRXR1_HUMAN;sp|Q16881-4|TRXR1_HUMAN;sp|Q16881-3|TRXR1_HUMAN;sp|Q16881-6|TRXR1_HUMAN;sp|Q16881|TRXR1_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	44.979	44.979	3	3.1731E-30	11662	20190821_JH_MUT_Ubi	168.99	124.42	89118000	0	9954000	39099000	0	0	6224100	3600000	14248000	15994000			5740	1394	5053	16299;16300;16301;16302;16303;16304	17130;17131;17132;17133;17134;17135;17136	17130				7
VVGIHMQGLGCDEMLQGFAVAVK	2 Oxidation (M)	2490.2069	0.20692137	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	2	0	1			1	1					39.374	39.374	3	1.7576E-06	9821	20190902_JH_EV_Ubi_2	96.848	54.78	3891500	1583500	0	0	1304400	1003600	0	0	0	0			5741	376	5054	16305;16306;16307	17137;17138;17139	17138			173;174	3
VVGIHMQGLGCDEMLQGFAVAVK	Oxidation (M)	2474.212	0.21200675	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	1	0	1									43.417	43.417	3	0.002129	11492	20190821_JH_EV_Ubi	63.454	22.252	1278000	1278000	0	0	0	0	0	0	0	0			5742	376	5054	16308	17140	17140			173;174	1
VVGIHMQGLGCDEMLQGFAVAVK	Unmodified	2458.2171	0.21709212	376	sp|P00390-5|GSHR_HUMAN;sp|P00390-4|GSHR_HUMAN;sp|P00390-2|GSHR_HUMAN;sp|P00390-3|GSHR_HUMAN;sp|P00390|GSHR_HUMAN	yes	no	0	0	0	0	0	1	1								47.004	47.004	3	0.0014327	12771	20190821_JH_EV_Ubi	65.887	37.805	2797000	1117400	1679600	0	0	0	0	0	0	0			5743	376	5054	16309;16310	17141;17142	17141				2
VVGKEQGQNLAR	GlyGly (K)	1411.7532	0.75317479	1061	sp|P62834|RAP1A_HUMAN;sp|P61224-3|RAP1B_HUMAN;sp|P61224|RAP1B_HUMAN;sp|A6NIZ1|RP1BL_HUMAN;sp|P61224-2|RAP1B_HUMAN;sp|P61224-4|RAP1B_HUMAN	yes	no	0	0	1	0	1			1							19.025	19.025	3	0.018853	3490	20190821_JH_WT_Ubi	72.531	35.946	1523500	0	0	1523500	0	0	0	0	0	0			5744	1061	5055	16311	17143	17143		1039		0
VVHLLNDQHLGVVTAATSLITTLAQK	Unmodified	2741.544	0.54396387	325	sp|O94973-3|AP2A2_HUMAN;sp|O94973|AP2A2_HUMAN;sp|O94973-2|AP2A2_HUMAN	yes	no	0	0	0	0	0		2	1			1	1	1	1	50.266	50.266	4	0.00039939	13357	20190821_JH_MUT_Ubi	69.07	57.937	147690000	0	27690000	80568000	0	0	2066300	2329500	4150400	30888000			5745	325	5056	16312;16313;16314;16315;16316;16317;16318	17144;17145;17146;17147;17148;17149;17150;17151	17144				8
VVHLLNDQHLGVVTAATSLITTLAQK	Deamidation (NQ)	2742.528	0.52797946	325	sp|O94973-3|AP2A2_HUMAN;sp|O94973|AP2A2_HUMAN;sp|O94973-2|AP2A2_HUMAN	yes	no	0	1	0	0	0			1							53.291	53.291	4	0.018906	15153	20190821_JH_WT_Ubi	48.867	33.924	9856100	0	0	9856100	0	0	0	0	0	0			5746	325	5056	16319	17152	17152	802			1
VVHLLNDQHMGVVTAAVSLITCLCK	Oxidation (M)	2793.434	0.43396119	357	sp|O95782-2|AP2A1_HUMAN;sp|O95782|AP2A1_HUMAN	yes	no	0	0	0	1	0			1					1		47.775	47.775	4	0.0023372	13176	20190821_JH_WT_Ubi	59.356	39.634	25949000	0	0	23859000	0	0	0	0	2089800	0			5747	357	5057	16320;16321	17153;17154	17153			161	2
VVITGIGLVTPLGVGTHLVWDR	Unmodified	2301.3209	0.32088721	2052	sp|Q9NWU1-2|OXSM_HUMAN;sp|Q9NWU1|OXSM_HUMAN	yes	no	0	0	0	0	0			1							52.447	52.447	3	0.0090291	14819	20190821_JH_WT_Ubi	51.786	30.837	2758400	0	0	2758400	0	0	0	0	0	0			5748	2052	5058	16322	17155	17155				1
VVLPSYEEALSLPSKTPEGGPAPPPYSEV	GlyGly (K)	3123.5652	0.5652124	1253	sp|Q13571|LAPM5_HUMAN	yes	yes	0	0	1	0	1			1					1	1	48.938	48.938	3	8.5228E-05	14268	20190902_JH_WT_Ubi_3	74.274	40.234	10897000	0	0	3916000	0	0	0	0	2898300	4082600			5749	1253	5059	16323;16324;16325	17156;17157;17158	17158		1320		3
VVLSVSSGGQHTVLLVK	Unmodified	1722.004	0.003969751	613	sp|P18754|RCC1_HUMAN;sp|P18754-2|RCC1_HUMAN	yes	no	0	0	0	0	0		1								35.373	35.373	3	0.031886	7891	20190821_JH_MUT_Ubi	42.568	5.7984	796920	0	796920	0	0	0	0	0	0	0			5750	613	5060	16326	17159	17159				1
VVNGAAASQPPSK	Deamidation (NQ)	1225.6303	0.63026569	293	sp|O75533|SF3B1_HUMAN	yes	yes	0	1	0	0	0									1	20.56	20.56	2	0.013647	5155	20190902_JH_WT_Ubi_3	76.165	18.991	1410200	0	0	0	0	0	0	0	0	1410200			5751	293	5061	16327	17160	17160	100			0
VVNVANVGAVPSGQDNIHR	Unmodified	1945.013	0.012971308	115	sp|O00203-3|AP3B1_HUMAN;sp|O00203|AP3B1_HUMAN	yes	no	0	0	0	0	0								1		30.866	30.866	3	0.01263	8677	20190902_JH_WT_Ubi_2	52.862	32.692	4206700	0	0	0	0	0	0	0	4206700	0			5752	115	5062	16328	17161	17161				1
VVPLADIITPNQFEAELLSGR	Unmodified	2281.2318	0.23179744	140	sp|O00764-3|PDXK_HUMAN;sp|O00764-2|PDXK_HUMAN;sp|O00764|PDXK_HUMAN	yes	no	0	0	0	0	0			1							55.184	55.184	3	3.5071E-11	15854	20190821_JH_WT_Ubi	124.08	100.63	2959500	0	0	2959500	0	0	0	0	0	0			5753	140	5063	16329	17162	17162				1
VVQVSAGDSHTAALTDDGR	Unmodified	1897.913	0.91298249	613	sp|P18754|RCC1_HUMAN;sp|P18754-2|RCC1_HUMAN	yes	no	0	0	0	0	0								1		27.287	27.287	3	0.034476	7420	20190902_JH_WT_Ubi_2	38.578	18.915	2015000	0	0	0	0	0	0	0	2015000	0			5754	613	5064	16330	17163	17163				1
VVSGMVNCNDDQGVLLGR	Unmodified	1931.9193	0.9193302	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	0	0	1									37.971	37.971	2	4.1855E-07	9374	20190821_JH_EV_Ubi	121.56	69.796	3987800	3987800	0	0	0	0	0	0	0	0			5755	645	5065	16331	17164	17164				0
VVSGMVNCNDDQGVLLGR	Oxidation (M);Deamidation (NQ)	1948.8983	0.8982604	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	1	0	1	0				1						35.979	35.979	2	0.006002	8851	20190902_JH_EV_Ubi_2	60.196	30.652	1060300	0	0	0	1060300	0	0	0	0	0			5756	645	5065	16332	17165	17165	231		398	1
VVSGMVNCNDDQGVLLGR	Oxidation (M)	1947.9142	0.91424482	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN;sp|P21980-3|TGM2_HUMAN	yes	no	0	0	0	1	0			1					1	1	34.244	34.244	3	1.5467E-15	7735	20190821_JH_WT_Ubi	157.84	104.67	25230000	0	0	4659200	0	0	0	0	12812000	7758400			5757	645	5065	16333;16334;16335	17166;17167;17168	17166			398	3
VVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLR	Unmodified	3451.7293	0.72933439	888	sp|P49588|SYAC_HUMAN;sp|P49588-2|SYAC_HUMAN	yes	no	0	0	0	0	0		1	1							52.398	52.398	3	4.3603E-07	14804	20190821_JH_WT_Ubi	77.646	60.669	4137400	0	1630000	2507300	0	0	0	0	0	0			5758	888	5066	16336;16337	17169;17170	17170				1
VVSLLLSHLPLLQPGNTEAK	Unmodified	2128.2256	0.22558985	1432	sp|Q5PRF9|SMAG2_HUMAN	yes	yes	0	0	0	0	0	1		1			1	1		1	47.626	47.626	3	3.8205E-05	13151	20190821_JH_WT_Ubi	98.077	27.986	16323000	1233500	0	6643000	0	0	1732400	1313900	0	5399900			5759	1432	5067	16338;16339;16340;16341;16342	17171;17172;17173;17174;17175	17174				5
VVSSIEQKTEGAEK	GlyGly (K)	1617.821	0.82097959	1078	sp|P63104|1433Z_HUMAN	yes	yes	0	0	1	0	1		1	1			1		1	1	22.299	22.299	3	0.0026719	4165	20190821_JH_WT_Ubi	89.43	63.318	37501000	0	2781500	8144900	0	0	4703700	0	12188000	9682700			5760	1078	5068	16343;16344;16345;16346;16347	17176;17177;17178;17179;17180	17178		1070		5
VVTNYNSAHDQNSNLLIEYFR	Unmodified	2496.2034	0.20335085	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	41.851	41.851	3	4.985E-56	12067	20190902_JH_WT_Ubi_3	198.88	151.91	609580000	0	30919000	245190000	0	0	20814000	30406000	133210000	149040000			5761	645	5069	16348;16349;16350;16351;16352;16353	17181;17182;17183;17184;17185;17186;17187	17186				7
VVTNYNSAHDQNSNLLIEYFR	Deamidation (NQ)	2497.1874	0.18736644	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	1	0	0	0			3			3	1	2	1	43.294	43.294	3	7.0892E-06	13355	20190902_JH_WT_Ubi_2	97.621	64.824	82167000	0	0	48334000	0	0	5800400	1511300	20377000	6145100			5762	645	5069	16354;16355;16356;16357;16358;16359;16360;16361;16362;16363	17188;17189;17190;17191;17192;17193;17194;17195;17196;17197	17196	232;233;234;877			10
VVTNYNSAHDQNSNLLIEYFR	2 Deamidation (NQ)	2498.1714	0.17138202	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	2	0	0	0			1							46.866	46.866	3	0.0067729	12790	20190821_JH_WT_Ubi	58.479	29.731	3523300	0	0	3523300	0	0	0	0	0	0			5763	645	5069	16364	17198	17198	232;233;234;877			1
VVVAENFDEIVNNENK	Unmodified	1831.8952	0.89520716	730	sp|P30101|PDIA3_HUMAN	yes	yes	0	0	0	0	0			1						1	39.921	39.921	2;3	0.0050057	11449	20190902_JH_WT_Ubi_3	70.98	33.026	29148000	0	0	24871000	0	0	0	0	0	4276900			5764	730	5070	16365;16366	17199;17200	17200				2
VVVHPLVLLSVVDHFNR	Unmodified	1942.1153	0.11525153	924	sp|P51665|PSMD7_HUMAN	yes	yes	0	0	0	0	0			1					1		46.014	46.014	4	0.00013181	12415	20190821_JH_WT_Ubi	103.3	79.936	10165000	0	0	6084500	0	0	0	0	4080200	0			5765	924	5071	16367;16368	17201;17202	17201				2
VVVQVLAEEPEAVLKGAK	GlyGly (K)	1992.1255	0.12554145	881	sp|P49327|FAS_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			40.331	40.331	3	7.3392E-15	10413	20190821_JH_EV_Ubi	153.92	133.37	86657000	18467000	18632000	0	10375000	7073600	17800000	14310000	0	0			5766	881	5072	16369;16370;16371;16372;16373;16374	17203;17204;17205;17206;17207;17208	17203		860		6
VVVTEKAAATAEEPDPK	GlyGly (K)	1867.9527	0.95272204	1845	sp|Q99733|NP1L4_HUMAN;sp|Q99733-2|NP1L4_HUMAN	yes	no	0	0	1	0	1	1	1				1				25.983	25.983	3	0.0059432	5868	20190902_JH_MUT_Ubi_2	70.197	34.54	2728400	675480	995410	0	0	0	1057500	0	0	0			5767	1845	5073	16375;16376;16377	17209;17210;17211	17211		1803		3
VVVTEVKEEDAFYSK	GlyGly (K)	1855.9204	0.92035928	2155	sp|Q9UKX7-2|NUP50_HUMAN;sp|Q9UKX7|NUP50_HUMAN	yes	no	0	0	1	0	1							1			31.527	31.527	3	0.024811	7532	20190902_JH_MUT_Ubi_3	57.328	28	1317600	0	0	0	0	0	0	1317600	0	0			5768	2155	5074	16378	17212	17212		2016		1
VVVVDDLLATGGTMNAACELLGR	Oxidation (M)	2389.1981	0.19813082	452	sp|P07741|APT_HUMAN	yes	yes	0	0	0	1	0			1					1	1	51.071	51.071	3	0.0039461	14351	20190821_JH_WT_Ubi	60.347	34.11	4697800	0	0	2128900	0	0	0	0	1310900	1258000			5769	452	5075	16379;16380;16381	17213;17214;17215	17213			253	3
VVVYSNTIQSIIAIIR	Unmodified	1788.0509	0.050919944	478	sp|P08754|GNAI3_HUMAN	yes	yes	0	0	0	0	0		1	1							54.436	54.436	3	3.36E-19	14549	20190821_JH_MUT_Ubi	165.78	105.42	3027000	0	1179000	1848100	0	0	0	0	0	0			5770	478	5076	16382;16383	17216;17217	17216				2
VVYGGGAAEISCALAVSQEADK	Unmodified	2194.0576	0.057597819	875	sp|P48643-2|TCPE_HUMAN;sp|P48643|TCPE_HUMAN	yes	no	0	0	0	0	0									1	42.875	42.875	3	0.0067415	12480	20190902_JH_WT_Ubi_3	55.621	16.098	2612000	0	0	0	0	0	0	0	0	2612000			5771	875	5077	16384	17218	17218				1
VVYSSKDPAQPK	GlyGly (K)	1431.7358	0.73579339	760	sp|P33527-2|MRP1_HUMAN;sp|P33527|MRP1_HUMAN;sp|P33527-6|MRP1_HUMAN;sp|P33527-5|MRP1_HUMAN;sp|P33527-4|MRP1_HUMAN;sp|P33527-3|MRP1_HUMAN;sp|P33527-9|MRP1_HUMAN;sp|P33527-8|MRP1_HUMAN;sp|P33527-7|MRP1_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1			20.038	20.038	3	0.0023228	4377	20190902_JH_MUT_Ubi_2	105.36	59.706	30089000	1896500	4229100	3231300	0	0	10795000	9936400	0	0			5772	760	5078	16385;16386;16387;16388;16389	17219;17220;17221;17222;17223	17221		731;743		5
VWAHYEEQPVEEVMPVLEEK	Oxidation (M)	2456.157	0.15697751	1518	sp|Q7KZF4|SND1_HUMAN	yes	yes	0	0	0	1	0			1							38.053	38.053	3	0.0013621	9165	20190821_JH_WT_Ubi	99.092	64.442	0	0	0	0	0	0	0	0	0	0			5773	1518	5079	16390	17224	17224			912	1
VWTSQLKSTIQTAEALR	GlyGly (K)	2045.0906	0.090552927	1393	sp|Q16875-3|F263_HUMAN;sp|Q16875-2|F263_HUMAN;sp|Q16875|F263_HUMAN;sp|Q16875-4|F263_HUMAN	yes	no	0	0	1	0	1		1								40.998	40.998	3	4.3785E-08	9878	20190821_JH_MUT_Ubi	131.61	93.468	3638900	0	3638900	0	0	0	0	0	0	0			5774	1393	5080	16391	17225	17225		1425		1
VWYEWAVTAPVCSAIHNPTGR	Unmodified	2413.1637	0.16373465	150	sp|O14744-4|ANM5_HUMAN;sp|O14744-3|ANM5_HUMAN;sp|O14744-5|ANM5_HUMAN;sp|O14744-2|ANM5_HUMAN;sp|O14744|ANM5_HUMAN	yes	no	0	0	0	0	0		1								45.108	45.108	3	0.00022559	11510	20190821_JH_MUT_Ubi	80.508	53.729	2194600	0	2194600	0	0	0	0	0	0	0			5775	150	5081	16392	17226	17226				1
VYDDAHNMLNTLISQKK	Deamidation (NQ)	1989.983	0.98297631	1842	sp|Q99707-2|METH_HUMAN;sp|Q99707|METH_HUMAN	yes	no	0	1	0	0	1								1		44.466	44.466	3	0.037187	13341	20190902_JH_WT_Ubi_2	44.925	21.084	0	0	0	0	0	0	0	0	0	0			5776	1842	5082	16393	17227	17227	591			1
VYNVTQHAVGIVVNK	Unmodified	1639.9046	0.90459006	858	sp|P46778|RL21_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	31.237	31.237	3	8.396E-06	7703	20190902_JH_MUT_Ubi_2	126.09	84.056	24184000	0	1504000	6689300	0	0	2671700	1914700	5750600	5653400			5777	858	5083	16394;16395;16396;16397;16398;16399	17228;17229;17230;17231;17232;17233	17229				6
VYQVSSKEHMQPFKENMEQFIIQAK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	3284.5482	0.54819891	2069	sp|Q9NZ56-2|FMN2_HUMAN;sp|Q9NZ56|FMN2_HUMAN	yes	no	0	2	2	1	2			1							38.889	38.889	3	0.025701	9480	20190821_JH_WT_Ubi	46.353	8.5452	0	0	0	0	0	0	0	0	0	0			5778	2069	5084	16400	17234	17234	656;1280	1949;1950	1104	1
VYSPHVLNLTLIDLPGITK	Unmodified	2092.1932	0.19322708	908	sp|P50570-3|DYN2_HUMAN;sp|P50570-2|DYN2_HUMAN;sp|P50570-5|DYN2_HUMAN;sp|P50570-4|DYN2_HUMAN;sp|P50570|DYN2_HUMAN;sp|Q9UQ16-5|DYN3_HUMAN;sp|Q9UQ16-2|DYN3_HUMAN;sp|Q9UQ16-3|DYN3_HUMAN;sp|Q9UQ16|DYN3_HUMAN;sp|Q9UQ16-4|DYN3_HUMAN	yes	no	0	0	0	0	0		1	1			1	1			49.633	49.633	3	3.8183E-14	12949	20190902_JH_MUT_Ubi_3	145.69	116.26	17807000	0	6371600	5468300	0	0	3299400	2667600	0	0			5779	908	5085	16401;16402;16403;16404	17235;17236;17237;17238	17237				4
VYVPTGFSAFPFELLHTPEK	Unmodified	2278.1674	0.16740626	441	sp|P07099|HYEP_HUMAN	yes	yes	0	0	0	0	0	1								1	51.969	51.969	3	0.0066945	14080	20190821_JH_EV_Ubi	58.98	35.881	6002200	2653400	0	0	0	0	0	0	0	3348800			5780	441	5086	16405;16406	17239;17240	17239				2
WAELLPLLQQCQVVR	Unmodified	1852.0029	0.0029238935	544	sp|P13489|RINI_HUMAN	yes	yes	0	0	0	0	0			1							51.787	51.787	2	0.027054	14594	20190821_JH_WT_Ubi	58.274	30.412	993190	0	0	993190	0	0	0	0	0	0			5781	544	5087	16407	17241	17241				0
WDTGENPIYKSAVTTVVNPK	GlyGly (K)	2332.1699	0.16992546	429	sp|P05556|ITB1_HUMAN	yes	yes	0	0	1	0	1	1	1	1	1		1	1	1	1	39.543	39.543	3	8.2222E-49	11746	20190902_JH_WT_Ubi_2	196.01	129.07	488050000	80874000	40017000	89646000	58126000	0	41743000	55042000	62200000	60399000			5782	429	5088	16408;16409;16410;16411;16412;16413;16414;16415	17242;17243;17244;17245;17246;17247;17248;17249	17248		414;415		8
WEVLIGSSHILTPTR	Unmodified	1707.9308	0.93080481	1367	sp|Q15833-2|STXB2_HUMAN;sp|Q15833|STXB2_HUMAN;sp|Q15833-3|STXB2_HUMAN	yes	no	0	0	0	0	0			1							41.083	41.083	3	0.010791	10399	20190821_JH_WT_Ubi	64.313	24.889	6624600	0	0	6624600	0	0	0	0	0	0			5783	1367	5089	16416	17250	17250				1
WGDAGAEYVVESTGVFTTMEK	Oxidation (M)	2292.0256	0.025628988	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	1	0	1			1		1	1			46.527	46.527	3	2.3631E-11	11670	20190902_JH_EV_Ubi_2	129.06	94.854	10093000	4332500	0	0	2801800	0	1573700	1384900	0	0			5784	407	5090	16417;16418;16419;16420	17251;17252;17253;17254	17252			197	4
WGDAGAEYVVESTGVFTTMEK	Unmodified	2276.0307	0.030714366	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	0	0	0		1	1	1	1	2	1	1	1	49.772	49.772	2;3	3.8133E-17	13895	20190821_JH_WT_Ubi	146.78	98.105	22673000	0	852820	9190500	635200	653040	1632900	365400	3640800	5702500			5785	407	5090	16421;16422;16423;16424;16425;16426;16427;16428;16429	17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266	17262				11
WGLGGTCVNVGCIPK	Unmodified	1616.7803	0.78031752	1394;1996	sp|Q16881-7|TRXR1_HUMAN;sp|Q16881-5|TRXR1_HUMAN;sp|Q16881-2|TRXR1_HUMAN;sp|Q16881-4|TRXR1_HUMAN;sp|Q16881-3|TRXR1_HUMAN;sp|Q16881-6|TRXR1_HUMAN;sp|Q16881|TRXR1_HUMAN;sp|Q9NNW7-2|TRXR2_HUMAN;sp|Q9NNW7|TRXR2_HUMAN	no	no	0	0	0	0	0						1				41.139	41.139	2	0.00054756	11665	20190902_JH_MUT_Ubi_2	113.38	60.653	2847400	0	0	0	0	0	2847400	0	0	0			5786	1394;1996	5091	16430	17267	17267				0
WISLNTVALVTDNAVYHWSMEGESQPVK	Oxidation (M)	3189.5441	0.54409981	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	1	0								1		52.813	52.813	3	0.0091824	15724	20190902_JH_WT_Ubi_2	46.295	22.786	1036400	0	0	0	0	0	0	0	1036400	0			5787	1123	5092	16431	17268	17268			698	1
WLMVNVAHDVLAAALYGAATGIMSDQMQR	3 Oxidation (M)	3179.5202	0.52021002	1870	sp|Q9BSK0|MALD1_HUMAN	yes	yes	0	0	0	3	0			1							53.619	53.619	3	0.0060034	15273	20190821_JH_WT_Ubi	43.206	22.438	1764800	0	0	1764800	0	0	0	0	0	0			5788	1870	5093	16432	17269	17269			1025;1026;1027	1
WLPAGDALLQMITIHLPSPVTAQK	Oxidation (M)	2615.4145	0.4145296	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	1	0		1	1			1	1	1	1	53.371	53.371	3	5.5964E-08	14168	20190821_JH_MUT_Ubi	104.82	72.243	225110000	0	47060000	99022000	0	0	15906000	17309000	19688000	26125000			5789	545	5094	16433;16434;16435;16436;16437;16438	17270;17271;17272;17273;17274;17275	17270			331	6
WLPAGDALLQMITIHLPSPVTAQK	Unmodified	2599.4196	0.41961498	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0		1				1		1		55.435	55.435	3	3.1341E-08	14789	20190821_JH_MUT_Ubi	106.89	88.896	35256000	0	31121000	0	0	0	1257400	0	2878000	0			5790	545	5094	16439;16440;16441	17276;17277;17278	17276				3
WNQQQLDDLYLIAICHR	Unmodified	2185.0739	0.073857005	1764	sp|Q96C86|DCPS_HUMAN	yes	yes	0	0	0	0	0								1		48.694	48.694	3	0.013091	14661	20190902_JH_WT_Ubi_2	56.793	32.802	1204000	0	0	0	0	0	0	0	1204000	0			5791	1764	5095	16442	17279	17279				1
WSAEASGKPSPSDPGSGTATMMNSSSR	2 Oxidation (M);GlyGly (K)	2828.1977	0.19774948	1429	sp|Q5JRA6-4|TGO1_HUMAN;sp|Q5JRA6-2|TGO1_HUMAN;sp|Q5JRA6|TGO1_HUMAN	yes	no	0	0	1	2	1							1			24.639	24.639	3	0.0057894	5384	20190902_JH_MUT_Ubi_3	47.806	30.202	388230	0	0	0	0	0	0	388230	0	0			5792	1429	5096	16443	17280	17280		1445	877;878	1
WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK	Unmodified	3470.7106	0.71064786	729	sp|P30086|PEBP1_HUMAN	yes	yes	0	0	0	0	0									1	42.233	42.233	4	0.032781	12254	20190902_JH_WT_Ubi_3	25.313	8.5124	2155900	0	0	0	0	0	0	0	0	2155900			5793	729	5097	16444	17281	17281				1
WTTTALGLLTIPIIIHPIDR	Unmodified	2243.3042	0.30417452	2112	sp|Q9UDX5|MTFP1_HUMAN	yes	yes	0	0	0	0	0		1	1							54.881	54.881	3	2.4682E-22	15713	20190821_JH_WT_Ubi	156.67	118.75	526120	0	526120	0	0	0	0	0	0	0			5794	2112	5098	16445;16446	17282;17283	17283				2
YADLTEDQLPSCESLKDTIAR	GlyGly (K)	2538.1908	0.19079684	612	sp|P18669|PGAM1_HUMAN	yes	yes	0	0	1	0	1							1			39.256	39.256	3	0.022379	10131	20190902_JH_MUT_Ubi_3	48.376	18.484	1869800	0	0	0	0	0	0	1869800	0	0			5795	612	5099	16447	17284	17284		597		1
YAHLVDVGQVGVNVPIPVPLPMFSFTGSR	Oxidation (M)	3111.6216	0.62156227	1140	sp|Q02252-2|MMSA_HUMAN;sp|Q02252|MMSA_HUMAN	yes	no	0	0	0	1	0		1								54.209	54.209	3	0.0019097	14462	20190821_JH_MUT_Ubi	51.783	22.313	5876000	0	5876000	0	0	0	0	0	0	0			5796	1140	5100	16448	17285	17285			709	1
YALQMEQLNGILLHLESELAQTR	Oxidation (M);Deamidation (NQ)	2686.3636	0.36361624	430	sp|P05783|K1C18_HUMAN	yes	yes	0	1	0	1	0	1		1			1	1	1	1	53.028	53.028	3	2.5198E-45	14837	20190902_JH_MUT_Ubi_2	184.62	113.7	31403000	2754400	0	10873000	0	0	2962700	1454800	9129200	4229200			5797	430	5101	16449;16450;16451;16452;16453;16454	17286;17287;17288;17289;17290;17291	17287	153;827		225	6
YALQMEQLNGILLHLESELAQTR	Oxidation (M)	2685.3796	0.37960066	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	1	0		1								53.715	53.715	3	1.7868E-05	14264	20190821_JH_MUT_Ubi	86.832	41.821	1540200	0	1540200	0	0	0	0	0	0	0			5798	430	5101	16455	17292	17292			225	1
YALQMEQLNGILLHLESELAQTR	Deamidation (NQ)	2670.3687	0.36870162	430	sp|P05783|K1C18_HUMAN	yes	yes	0	1	0	0	0		1	1							54.203	54.203	3	1.1976E-10	14473	20190821_JH_MUT_Ubi	123.12	78.864	7065500	0	3410800	3654700	0	0	0	0	0	0			5799	430	5101	16456;16457	17293;17294	17293	153;827			2
YAPTEAQLNAVDALIDSMSLAK	Oxidation (M)	2336.157	0.15697751	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	0	1	0									1	50.38	50.38	3	6.5387E-12	14760	20190902_JH_WT_Ubi_3	132.65	65.228	2736000	0	0	0	0	0	0	0	0	2736000			5800	542	5102	16458	17295;17296	17296			324	2
YASGPLLPTLTAPLLPIPFPLAPGTGR	Unmodified	2729.552	0.55200936	1960	sp|Q9H6T0-2|ESRP2_HUMAN;sp|Q9H6T0|ESRP2_HUMAN	yes	no	0	0	0	0	0		1								58.261	58.261	3	1.052E-07	15203	20190821_JH_MUT_Ubi	97.825	84.927	1968100	0	1968100	0	0	0	0	0	0	0			5801	1960	5103	16459	17297	17297				1
YASICQQNGIVPIVEPEILPDGDHDLK	Deamidation (NQ)	3020.4801	0.48010256	400;498	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN;sp|P09972|ALDOC_HUMAN	no	no	0	1	0	0	0		1	1		1	1		1	1	48.008	48.008	3	2.7242E-12	14412	20190902_JH_WT_Ubi_2	112.88	65.072	64243000	0	4575600	19692000	0	1379700	970100	0	5462600	32164000			5802	400;498	5104	16460;16461;16462;16463;16464;16465	17298;17299;17300;17301;17302;17303;17304	17302	138;815;816			7
YASICQQNGIVPIVEPEILPDGDHDLK	2 Deamidation (NQ)	3021.4641	0.46411815	400;498	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN;sp|P09972|ALDOC_HUMAN	no	no	0	2	0	0	0								1	1	48.686	48.686	3	1.8767E-07	14227	20190902_JH_WT_Ubi_3	99.097	65.647	5686200	0	0	0	0	0	0	0	1893800	3792500			5803	400;498	5104	16466;16467	17305;17306;17307	17307	138;815;816			3
YASICQQNGIVPIVEPEILPDGDHDLK	Unmodified	3019.4961	0.49608698	400;498	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN;sp|P09972|ALDOC_HUMAN	no	no	0	0	0	0	0									1	46.66	46.66	3	0.00021316	13732	20190902_JH_WT_Ubi_3	72.158	37.665	1810500	0	0	0	0	0	0	0	0	1810500			5804	400;498	5104	16468	17308	17308				1
YASICQQNGIVPIVEPEILPDGDHDLKR	GlyGly (K);Deamidation (NQ)	3290.6241	0.62414104	400;498	sp|P04075|ALDOA_HUMAN;sp|P04075-2|ALDOA_HUMAN;sp|P09972|ALDOC_HUMAN	no	no	0	1	1	0	1						1				43.986	43.986	4	0.0095204	12682	20190902_JH_MUT_Ubi_2	44.167	18.12	9437000	0	0	0	0	0	9437000	0	0	0			5805	400;498	5105	16469	17309	17309	138;815;816	370		1
YAVIPLSTNSGLIGWVPHCDTLHALIR	Unmodified	3002.58	0.5800318	829	sp|P42345|MTOR_HUMAN	yes	yes	0	0	0	0	0		1	1							49.851	49.851	4	0.01283	13876	20190821_JH_WT_Ubi	40.756	23.228	19051000	0	4101400	14950000	0	0	0	0	0	0			5806	829	5106	16470;16471	17310;17311	17311				2
YAVWFGGSMLASTPEFYQVCHTK	Oxidation (M)	2694.2247	0.22467992	1015	sp|P61158|ARP3_HUMAN	yes	yes	0	0	0	1	0								1		45.344	45.344	3	0.012356	13634	20190902_JH_WT_Ubi_2	49.768	32.838	1554500	0	0	0	0	0	0	0	1554500	0			5807	1015	5107	16472	17312	17312			630	1
YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY	Unmodified	3992.6305	0.63054414	1832	sp|Q99439|CNN2_HUMAN;sp|Q99439-2|CNN2_HUMAN	yes	no	0	0	0	0	0			1							48.652	48.652	3	0.0335	13508	20190821_JH_WT_Ubi	23.925	4.9755	1136000	0	0	1136000	0	0	0	0	0	0			5808	1832	5108	16473	17313	17313				1
YCTTYQSKGQTLTLTQQQR	GlyGly (K)	2418.1598	0.15977148	1117	sp|P98194-2|AT2C1_HUMAN;sp|P98194-4|AT2C1_HUMAN;sp|P98194|AT2C1_HUMAN;sp|P98194-3|AT2C1_HUMAN;sp|P98194-5|AT2C1_HUMAN;sp|P98194-8|AT2C1_HUMAN;sp|P98194-9|AT2C1_HUMAN;sp|P98194-6|AT2C1_HUMAN;sp|P98194-7|AT2C1_HUMAN	yes	no	0	0	1	0	1	1	1	1			1	1	1	1	28.495	28.495	3	1.1935E-60	5844	20190821_JH_WT_Ubi	218.36	173.61	34156000	1498500	2124500	7267100	0	0	2516400	1913900	8167300	10668000			5809	1117	5109	16474;16475;16476;16477;16478;16479;16480	17314;17315;17316;17317;17318;17319;17320;17321	17319		1113		8
YDAPFVFAEVNADVVDWIQQDDGSVHK	Unmodified	3063.425	0.42503053	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	0		1	1					1		55.08	55.08	3	2.4787E-07	15784	20190821_JH_WT_Ubi	95.926	71.282	20719000	0	3740800	11635000	0	0	0	0	5343500	0			5810	645	5110	16481;16482;16483	17322;17323;17324	17323				3
YDDMAACMKSVTEQGAELSNEER	2 Oxidation (M);GlyGly (K)	2779.1371	0.13712306	1078	sp|P63104|1433Z_HUMAN	yes	yes	0	0	1	2	1									1	28.493	28.493	3	0.019168	7563	20190902_JH_WT_Ubi_3	40.994	18.871	1389900	0	0	0	0	0	0	0	0	1389900			5811	1078	5111	16484	17325	17325		1071	661;662	1
YDDMATCMKAVTEQGAELSNEER	2 Oxidation (M);GlyGly (K)	2793.1528	0.15277312	695	sp|P27348|1433T_HUMAN	yes	yes	0	0	1	2	1		1							1	29.23	29.23	3	3.3856E-06	5558	20190821_JH_MUT_Ubi	91.166	58.618	379970	0	379970	0	0	0	0	0	0	0			5812	695	5112	16485;16486	17326;17327	17326		682	436;437	2
YDDMATCMKAVTEQGAELSNEER	Oxidation (M);GlyGly (K)	2777.1579	0.1578585	695	sp|P27348|1433T_HUMAN	yes	yes	0	0	1	1	1		1								34.457	34.457	3	0.009157	7559	20190821_JH_MUT_Ubi	56.29	42.559	424790	0	424790	0	0	0	0	0	0	0			5813	695	5112	16487	17328	17328		682	436;437	1
YDGHLPIEIK	Unmodified	1183.6237	0.62372375	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0			1					1	1	33.493	33.493	3	0.0072301	9654	20190902_JH_WT_Ubi_2	91.584	36.602	21571000	0	0	6384000	0	0	0	0	8387000	6799600			5814	845	5113	16488;16489;16490	17329;17330;17331	17330				3
YDGSTIVPGEQGAEYQHFIQQCTDDVR	Unmodified	3112.3832	0.38324207	1268	sp|Q14019|COTL1_HUMAN	yes	yes	0	0	0	0	0	1		1					1	1	41.329	41.329	3	3.3267E-10	11857	20190902_JH_WT_Ubi_3	100.14	81.947	93589000	2491400	0	43013000	0	0	0	0	23870000	24214000			5815	1268	5114	16491;16492;16493;16494	17332;17333;17334;17335;17336	17336				5
YDKSNILWDK	GlyGly (K)	1394.683	0.68302954	1379	sp|Q16625-4|OCLN_HUMAN;sp|Q16625-3|OCLN_HUMAN;sp|Q16625|OCLN_HUMAN	yes	no	0	0	1	0	1		1								31.61	31.61	3	0.016857	6451	20190821_JH_MUT_Ubi	80.102	32.208	911530	0	911530	0	0	0	0	0	0	0			5816	1379	5115	16495	17337	17337		1419		1
YDLLVSNAIQFLASVCERPHYK	Unmodified	2622.3264	0.32644288	973	sp|P55060|XPO2_HUMAN;sp|P55060-3|XPO2_HUMAN	yes	no	0	0	0	0	1		1								52.029	52.029	4	0.0012636	13760	20190821_JH_MUT_Ubi	71.637	46.379	3498600	0	3498600	0	0	0	0	0	0	0			5817	973	5116	16496	17338	17338				1
YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNK	Oxidation (M)	4134.9357	0.93565555	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	1	0		1	1			1		1	1	44.803	44.803	4;5	0.00010374	13004	20190902_JH_WT_Ubi_3	55.096	40.085	163390000	0	20707000	59925000	0	0	14167000	0	66004000	2584200			5818	637	5117	16497;16498;16499;16500;16501	17339;17340;17341;17342;17343	17343			390	5
YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNK	Unmodified	4118.9407	0.94074093	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0		1	1					1		46.545	46.545	5	9.4622E-05	12587	20190821_JH_WT_Ubi	55.925	39.261	66962000	0	16872000	45554000	0	0	0	0	4535400	0			5819	637	5117	16502;16503;16504	17344;17345;17346	17345				3
YDNSLKIISNASCTTNCLAPLAK	GlyGly (K)	2667.2996	0.29963578	407	sp|P04406|G3P_HUMAN;sp|P04406-2|G3P_HUMAN	yes	no	0	0	1	0	1		1				1	1			40.414	40.414	3	5.3484E-06	9827	20190821_JH_MUT_Ubi	91.964	61.082	8004500	0	2938800	0	0	0	2722200	2343600	0	0			5820	407	5118	16505;16506;16507	17347;17348;17349	17347		375		3
YDSVNEKLSDSPSMGR	Oxidation (M);GlyGly (K)	1913.8425	0.84251967	229	sp|O60245|PCDH7_HUMAN;sp|O60245-2|PCDH7_HUMAN	yes	no	0	0	1	1	1	1			1	1					25.219	25.219	3	3.0494E-07	4803	20190821_JH_EV_Ubi	124.2	59.023	8483400	2956900	0	0	2089000	3437400	0	0	0	0			5821	229	5119	16508;16509;16510	17350;17351;17352	17350		206	97	3
YDSVNEKLSDSPSMGR	GlyGly (K)	1897.8476	0.84760504	229	sp|O60245|PCDH7_HUMAN;sp|O60245-2|PCDH7_HUMAN	yes	no	0	0	1	0	1						1	1			28.114	28.114	3	0.018817	6370	20190902_JH_MUT_Ubi_3	58.83	36.027	1162900	0	0	0	0	0	683670	479210	0	0			5822	229	5119	16511;16512	17353;17354	17354		206		2
YEATSVQQKVNFSEEGETEEDDQDSSHSSVTTVK	GlyGly (K)	3903.7042	0.70423767	1430	sp|Q5JTV8-3|TOIP1_HUMAN;sp|Q5JTV8|TOIP1_HUMAN;sp|Q5JTV8-2|TOIP1_HUMAN	yes	no	0	0	1	0	1		1		1					1	30.955	30.955	4	1.6672E-07	7212	20190902_JH_EV_Ubi_2	83.939	68.505	11606000	0	3102100	0	2788000	0	0	0	0	5715900			5823	1430	5120	16513;16514;16515	17355;17356;17357	17355		1449;1450		3
YEDFSNLGTTHLLR	Unmodified	1664.8158	0.81583463	655	sp|P22695|QCR2_HUMAN	yes	yes	0	0	0	0	0									1	37.443	37.443	3	0.0075869	10576	20190902_JH_WT_Ubi_3	72.681	43.875	4799300	0	0	0	0	0	0	0	0	4799300			5824	655	5121	16516	17358	17358				1
YEDICPSTHNMDVPNIK	Oxidation (M)	2047.8979	0.89792605	1084	sp|P63241|IF5A1_HUMAN;sp|Q6IS14|IF5AL_HUMAN;sp|P63241-2|IF5A1_HUMAN;sp|Q9GZV4|IF5A2_HUMAN	yes	no	0	0	0	1	0	1		1	1	1			1	1	30.037	30.037	3	0.0013007	8431	20190902_JH_WT_Ubi_2	83.966	58.376	51162000	4300900	0	7589900	3318100	3580400	0	0	18481000	13891000			5825	1084	5122	16517;16518;16519;16520;16521;16522	17359;17360;17361;17362;17363;17364	17363			669	6
YEDVVQGLQKR	GlyGly (K)	1447.7419	0.74194141	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1	1	1		1	1	1	1			27.294	27.294	3	8.9574E-18	6018	20190902_JH_EV_Ubi_2	149.33	112.15	64094000	5346900	11315000	0	0	6221900	25007000	16203000	0	0			5826	245	5123	16523;16524;16525;16526;16527;16528	17365;17366;17367;17368;17369;17370	17366		218		6
YEHLLQLLDLAQEK	Unmodified	1711.9145	0.91448604	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	0	0	0		1								45.945	45.945	3	0.0014259	11845	20190821_JH_MUT_Ubi	94.781	45.501	610380	0	610380	0	0	0	0	0	0	0			5827	245	5124	16529	17371	17371				1
YEPAAVSEQGDKK	GlyGly (K)	1534.7264	0.72635092	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	0	1	1	1	1	1	1	1	1	1	1	19.837	19.837	3	8.0406E-06	4347	20190902_JH_MUT_Ubi_2	137.09	95.983	243570000	22970000	12243000	19233000	37210000	36181000	35267000	19295000	28940000	32235000			5828	418	5125	16530;16531;16532;16533;16534;16535;16536;16537;16538	17372;17373;17374;17375;17376;17377;17378;17379;17380;17381	17377		393;394		10
YEPAAVSEQGDKK	GlyGly (K);Deamidation (NQ)	1535.7104	0.71036651	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	1	1	0	1									1	20.675	20.675	3	0.030259	5212	20190902_JH_WT_Ubi_3	75.589	38.34	2503200	0	0	0	0	0	0	0	0	2503200			5829	418	5125	16539	17382	17382	825	393;394		1
YESHPVCADLQAK	Unmodified	1516.698	0.69802768	2057	sp|Q9NX63|MIC19_HUMAN	yes	yes	0	0	0	0	0									1	23.748	23.748	3	0.030605	6126	20190902_JH_WT_Ubi_3	51.726	20.854	8323300	0	0	0	0	0	0	0	0	8323300			5830	2057	5126	16540	17383	17383				1
YESQLSTNEEKVDTDDR	GlyGly (K)	2141.9349	0.93489973	1237	sp|Q13433-2|S39A6_HUMAN;sp|Q13433|S39A6_HUMAN	yes	no	0	0	1	0	1	1		1	1	1					25.345	25.345	3	2.4084E-11	4819	20190821_JH_EV_Ubi	146.67	120.18	17231000	6198800	0	1694500	3717600	5620100	0	0	0	0			5831	1237	5127	16541;16542;16543;16544	17384;17385;17386;17387;17388	17384		1302		5
YESQLSTNEEKVDTDDRTEGYLR	GlyGly (K)	2861.2951	0.29513857	1237	sp|Q13433-2|S39A6_HUMAN;sp|Q13433|S39A6_HUMAN	yes	no	0	0	1	0	2	1	1	1	1		1	1	1	1	29.742	29.742	4	0.0014446	6814	20190902_JH_MUT_Ubi_3	66.702	50.301	83179000	20840000	7110600	6295300	13427000	0	10941000	6905500	8359200	9300600			5832	1237	5128	16545;16546;16547;16548;16549;16550;16551;16552	17389;17390;17391;17392;17393;17394;17395;17396	17393		1302		8
YESSTASALVA	Unmodified	1097.5241	0.52406928	1046	sp|P62277|RS13_HUMAN	yes	yes	0	0	0	0	0									1	34.965	34.965	1	0.034844	9794	20190902_JH_WT_Ubi_3	37.727	15.596	2049000	0	0	0	0	0	0	0	0	2049000			5833	1046	5129	16553	17397	17397				1
YEVLKTENPGDASDLQGR	GlyGly (K)	2105.0025	0.0025257806	245	sp|O60437|PEPL_HUMAN	yes	yes	0	0	1	0	1		1			1	1	1	1		30.173	30.173	3	1.4096E-08	6969	20190902_JH_MUT_Ubi_3	129.88	89.81	14965000	0	3237800	0	0	1472200	2671900	5913500	1670000	0			5834	245	5130	16554;16555;16556;16557;16558	17398;17399;17400;17401;17402	17401		220		5
YFAGNLASGGAAGATSLCFVYPLDFAR	Unmodified	2795.3377	0.33773584	532	sp|P12236|ADT3_HUMAN	no	no	0	0	0	0	0			1							54.133	54.133	3	0.034931	15511	20190821_JH_WT_Ubi	31.127	2.7091	4053000	0	0	4053000	0	0	0	0	0	0			5835	532	5131	16559	17403	17403				1
YFHVVIAGPQDSPFEGGTFK	Unmodified	2195.0688	0.068754852	1013	sp|P61088|UBE2N_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1	1	1	42.665	42.665	3	4.4486E-49	10715	20190821_JH_MUT_Ubi	198.61	148.56	83549000	0	14056000	32165000	0	0	9359300	5446900	11892000	10630000			5836	1013	5132	16560;16561;16562;16563;16564;16565	17404;17405;17406;17407;17408;17409;17410	17404				7
YGADVDAGSIVHAAQKLGEPPVLPVSR	GlyGly (K)	2859.4879	0.48790556	1433	sp|Q5R3F8|PPR29_HUMAN	yes	yes	0	0	1	0	1	1									44.749	44.749	4	0.0068667	12005	20190821_JH_EV_Ubi	48.489	19.724	2432600	2432600	0	0	0	0	0	0	0	0			5837	1433	5133	16566	17411	17411		1452		1
YGAFGLPITVAHVDGQTHMLFGSDR	Oxidation (M)	2704.3068	0.30677007	2210	sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN;sp|Q9Y2Q3-4|GSTK1_HUMAN	yes	no	0	0	0	1	0			1							43.641	43.641	4	0.012237	11445	20190821_JH_WT_Ubi	45.992	30.696	27590000	0	0	27590000	0	0	0	0	0	0			5838	2210	5134	16567	17412	17412			1144	1
YGAFGLPITVAHVDGQTHMLFGSDR	Unmodified	2688.3119	0.31185545	2210	sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN;sp|Q9Y2Q3-4|GSTK1_HUMAN	yes	no	0	0	0	0	0			1							45.643	45.643	4	0.026459	12282	20190821_JH_WT_Ubi	34.217	13.592	19602000	0	0	19602000	0	0	0	0	0	0			5839	2210	5134	16568	17413	17413				1
YGDFNKEVHK	GlyGly (K)	1349.6364	0.6364137	686	sp|P26038|MOES_HUMAN	yes	yes	0	0	1	0	1									1	19.943	19.943	3	0.029127	4980	20190902_JH_WT_Ubi_3	67.207	37.28	2060300	0	0	0	0	0	0	0	0	2060300			5840	686	5135	16569	17414	17414		676		1
YGDGGSTFQSTTGHCVHMR	Oxidation (M)	2112.8742	0.87417092	748	sp|P31943|HNRH1_HUMAN	yes	yes	0	0	0	1	0	1		1					1	1	21.479	21.479	4	0.00031235	3982	20190821_JH_WT_Ubi	85.469	59.394	28889000	1439500	0	3438200	0	0	0	0	16984000	7027300			5841	748	5136	16570;16571;16572;16573	17415;17416;17417;17418	17416			470	4
YGDSEFTVQSTTGHCVHMR	Oxidation (M)	2226.9423	0.94225048	937	sp|P52597|HNRPF_HUMAN	yes	yes	0	0	0	1	0			1					1	1	25.068	25.068	4	0.0019837	6714	20190902_JH_WT_Ubi_2	71.601	47.966	11502000	0	0	2920400	0	0	0	0	5391000	3190700			5842	937	5137	16574;16575;16576	17419;17420;17421	17420			587	3
YGDSEFTVQSTTGHCVHMR	Unmodified	2210.9473	0.94733586	937	sp|P52597|HNRPF_HUMAN	yes	yes	0	0	0	0	0								1		27.997	27.997	4	0.015372	7651	20190902_JH_WT_Ubi_2	48.391	23.07	2036700	0	0	0	0	0	0	0	2036700	0			5843	937	5137	16577	17422	17422				1
YGGPNHIVGSPFK	Unmodified	1371.6935	0.69353465	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	0	0	0									1	28.777	28.777	3	0.029362	7667	20190902_JH_WT_Ubi_3	52.79	18.036	3117100	0	0	0	0	0	0	0	0	3117100			5844	282	5138	16578	17423	17423				1
YGGPNHIVGSPFKAK	GlyGly (K)	1684.8685	0.8685389	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN	yes	no	0	0	1	0	1		1				1	1			25.171	25.171	4	0.0046121	5674	20190902_JH_MUT_Ubi_2	75.102	32.676	8184700	0	1065300	0	0	0	4492300	2627200	0	0			5845	282	5139	16579;16580;16581	17424;17425;17426	17425		275		3
YGGPPPDSVYSGQQPSVGTEIFVGK	Unmodified	2565.2387	0.23873331	252	sp|O60506-4|HNRPQ_HUMAN;sp|O60506-3|HNRPQ_HUMAN;sp|O60506-2|HNRPQ_HUMAN;sp|O60506|HNRPQ_HUMAN	yes	no	0	0	0	0	0			1					1	1	43.225	43.225	3	0.00014016	11323	20190821_JH_WT_Ubi	76.156	30.899	8143700	0	0	3219900	0	0	0	0	2518400	2405400			5846	252	5140	16582;16583;16584	17427;17428;17429	17427				3
YGGQPVPNFPSKLQVEPAVDTSGVQCYGPGIEGQGVFR	GlyGly (K)	4148.0062	0.0061779556	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	1	0	1	1	1					1		1	46.453	46.453	3;4	1.8188E-06	13556	20190902_JH_WT_Ubi_3	74.171	51.891	15922000	2534200	8035000	0	0	0	0	3090200	0	2262100			5847	637	5141	16585;16586;16587;16588	17430;17431;17432;17433	17433		610		4
YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR	GlyGly (K)	3196.5789	0.57890541	1152	sp|Q04323|UBXN1_HUMAN;sp|Q04323-2|UBXN1_HUMAN	yes	no	0	0	1	0	1		1	1		1	1	1	1	1	32.736	32.736	3	4.7747E-06	8982	20190902_JH_WT_Ubi_3	85.291	47.145	15283000	0	2273300	1815600	0	696450	1923800	1848400	3115300	3610000			5848	1152	5142	16589;16590;16591;16592;16593;16594;16595	17434;17435;17436;17437;17438;17439;17440;17441;17442;17443	17443		1155		10
YGINTTDIFQTVDLWEGK	Unmodified	2099.0211	0.021135958	796	sp|P37802|TAGL2_HUMAN;sp|P37802-2|TAGL2_HUMAN	yes	no	0	0	0	0	0			1					1		54.352	54.352	3	1.6068E-10	16224	20190902_JH_WT_Ubi_2	135.09	87.542	3336500	0	0	2211700	0	0	0	0	1124800	0			5849	796	5143	16596;16597	17444;17445	17445				2
YGKDATNVGDEGGFAPNILENK	GlyGly (K)	2422.1401	0.14008189	435	sp|P06733|ENOA_HUMAN;sp|P06733-2|ENOA_HUMAN	yes	no	0	0	1	0	1				1		1	1			36.534	36.534	3	9.5406E-12	9890	20190902_JH_MUT_Ubi_2	131.98	89.932	4879800	0	0	0	1766100	0	1614100	1499600	0	0			5850	435	5144	16598;16599;16600	17446;17447;17448	17447		434		3
YGKSLYYYIQQDTK	GlyGly (K)	1882.9101	0.91012895	446	sp|P07355|ANXA2_HUMAN;sp|P07355-2|ANXA2_HUMAN;sp|A6NMY6|AXA2L_HUMAN	yes	no	0	0	1	0	1						1	1	1	1	35.068	35.068	3	3.2466E-07	9842	20190902_JH_WT_Ubi_3	138.87	84.272	8502900	0	0	0	0	0	1957600	1936800	2299600	2308900			5851	446	5145	16601;16602;16603;16604	17449;17450;17451;17452	17452		445;447		4
YGNKKQSMISAK	Oxidation (M);2 GlyGly (K);Deamidation (NQ)	1598.7723	0.77225526	1424	sp|Q5CZC0|FSIP2_HUMAN	yes	yes	0	1	2	1	2	1									18.616	18.616	3	0.035422	3135	20190821_JH_EV_Ubi	46.844	14.59	1738900	1738900	0	0	0	0	0	0	0	0			5852	1424	5146	16605	17453	17453	1067			0
YGNTVASLQAWLEDAEKMLNQSENAKK	Oxidation (M);2 GlyGly (K);2 Deamidation (NQ)	3283.5303	0.53030023	1652	sp|Q8NF91-5|SYNE1_HUMAN;sp|Q8NF91-6|SYNE1_HUMAN;sp|Q8NF91-10|SYNE1_HUMAN;sp|Q8NF91-7|SYNE1_HUMAN;sp|Q8NF91-4|SYNE1_HUMAN;sp|Q8NF91|SYNE1_HUMAN	yes	no	0	2	2	1	2		1								38.667	38.667	3	0.0066224	9005	20190821_JH_MUT_Ubi	56.625	27.279	611920	0	611920	0	0	0	0	0	0	0			5853	1652	5147	16606	17454	17454	536;537;538;1150;1151	1650;1651;1652	955	1
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	Unmodified	3783.8032	0.80316804	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	0	0	0			1							42.375	42.375	4	0.00077033	10965	20190821_JH_WT_Ubi	57.602	38.224	4278300	0	0	4278300	0	0	0	0	0	0			5854	559	5148	16607	17455	17455				0
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	Oxidation (M)	3799.7981	0.79808266	559	sp|P14866|HNRPL_HUMAN;sp|P14866-2|HNRPL_HUMAN	yes	no	0	0	0	1	0									1	39.989	39.989	4	0.0022622	11507	20190902_JH_WT_Ubi_3	46.557	11.237	1704300	0	0	0	0	0	0	0	0	1704300			5855	559	5148	16608	17456	17456			351	1
YGQCWVFAAVACTVLR	Unmodified	1899.9124	0.91239433	645	sp|P21980|TGM2_HUMAN;sp|P21980-2|TGM2_HUMAN	yes	no	0	0	0	0	0			1							53.83	53.83	3	1.1255E-19	15366	20190821_JH_WT_Ubi	169.3	122.55	5589200	0	0	5589200	0	0	0	0	0	0			5856	645	5149	16609	17457	17457				1
YGSDIVPFSKVDEEQMK	Oxidation (M);GlyGly (K)	2100.9674	0.96738583	542	sp|P13010|XRCC5_HUMAN	yes	yes	0	0	1	1	1					1					34.129	34.129	3	0.0029692	8307	20190902_JH_EV_Ubi_3	78.191	47.708	586680	0	0	0	0	586680	0	0	0	0			5857	542	5150	16610	17458	17458		536	325	1
YGYIHLYDLETGTCIYMNR	Oxidation (M)	2397.077	0.076953052	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	1	0			1							42.855	42.855	3	0.0044913	11156	20190821_JH_WT_Ubi	65.949	41.411	5016800	0	0	5016800	0	0	0	0	0	0			5858	1123	5151	16611	17459	17459			699	1
YHEQLSTQSLIELFESFK	Unmodified	2198.0895	0.089549874	1123	sp|Q00610-2|CLH1_HUMAN;sp|Q00610|CLH1_HUMAN	yes	no	0	0	0	0	0								1	1	40.372	40.372	3	0.00010603	16097	20190902_JH_WT_Ubi_2	99.663	45.885	15957000	0	0	0	0	0	0	0	3940700	12017000			5859	1123	5152	16612;16613	17460;17461	17460				2
YHPDKNPDNPEAADK	GlyGly (K)	1823.8075	0.80745479	1949	sp|Q9H3Z4-2|DNJC5_HUMAN;sp|Q9H3Z4|DNJC5_HUMAN	yes	no	0	0	1	0	1				1						18.222	18.222	3	0.027608	3817	20190902_JH_EV_Ubi_2	55.414	16.41	1587500	0	0	0	1587500	0	0	0	0	0			5860	1949	5153	16614	17462	17462		1885		1
YHTSQSGDEMTSLSEYVSR	Oxidation (M)	2191.9328	0.93279124	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	1	0	1	1	1					1	1	29.726	29.726	3	6.6189E-05	6202	20190821_JH_WT_Ubi	100.97	73.94	49336000	2961300	871620	11891000	0	0	0	0	14055000	19557000			5861	465	5154	16615;16616;16617;16618;16619	17463;17464;17465;17466;17467	17465			271	5
YHTSQSGDEMTSLSEYVSR	Unmodified	2175.9379	0.93787661	465	sp|P08238|HS90B_HUMAN	yes	yes	0	0	0	0	0			1							34.372	34.372	3	0.014816	7803	20190821_JH_WT_Ubi	50.722	21.142	5524900	0	0	5524900	0	0	0	0	0	0			5862	465	5154	16620	17468	17468				1
YHYELLNYIDLPVLAIHGK	Unmodified	2270.2099	0.20993978	2047	sp|Q9NVP1|DDX18_HUMAN	yes	yes	0	0	0	0	0	1		1							49.453	49.453	3	8.0941E-14	13744	20190821_JH_WT_Ubi	144.08	109.04	5586400	956390	0	4630000	0	0	0	0	0	0			5863	2047	5155	16621;16622	17469;17470	17470				2
YIAENMKAQNEAK	Oxidation (M)	1524.7242	0.72424243	753	sp|P32297-3|ACHA3_HUMAN;sp|P32297-1|ACHA3_HUMAN;sp|P32297|ACHA3_HUMAN	yes	no	0	0	0	1	1							1			31.218	31.218	3	0.014368	7448	20190902_JH_MUT_Ubi_3	79.283	9.1939	6594700	0	0	0	0	0	0	6594700	0	0			5864	753	5156	16623	17471	17471			473	0
YIAIVSTTVETK	Unmodified	1323.7286	0.72858275	904	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN	yes	no	0	0	0	0	0						1				35.223	35.223	2	0.029309	9341	20190902_JH_MUT_Ubi_2	61.161	26.909	1913400	0	0	0	0	0	1913400	0	0	0			5865	904	5157	16624	17472	17472				0
YIAIVSTTVETKEPEK	GlyGly (K)	1921.0044	0.004423261	904	sp|P50395-2|GDIB_HUMAN;sp|P50395|GDIB_HUMAN	yes	no	0	0	1	0	1	1	1				1			1	32.041	32.041	3	0.005477	6717	20190821_JH_MUT_Ubi	73.156	41.329	7951800	1493600	1906200	0	0	0	2158900	0	0	2393000			5866	904	5158	16625;16626;16627;16628	17473;17474;17475;17476	17474		869		4
YIDQEELNKTK	GlyGly (K)	1493.7362	0.73618733	455;465;1422	sp|P08238|HS90B_HUMAN;sp|Q58FF8|H90B2_HUMAN;sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN;sp|Q14568|HS902_HUMAN	no	no	0	0	1	0	1						1				23.169	23.169	3	0.015966	5164	20190902_JH_MUT_Ubi_2	83.045	49.504	0	0	0	0	0	0	0	0	0	0			5867	465;1422;455	5159	16629	17477	17477		459		1
YILRPLASCPSLHAVIESQPNIVIIR	Unmodified	2958.6477	0.64771744	198	sp|O43264-2|ZW10_HUMAN;sp|O43264|ZW10_HUMAN	yes	no	0	0	0	0	1	1	1								45.359	45.359	4	0.017601	12231	20190821_JH_EV_Ubi	44.848	23.499	3710000	2384300	1325700	0	0	0	0	0	0	0			5868	198	5160	16630;16631	17478;17479	17478				2
YIQEQNEKIYAPQGLLLTDPIER	GlyGly (K)	2844.4658	0.46577313	1536	sp|Q7Z5G4-3|GOGA7_HUMAN;sp|Q7Z5G4|GOGA7_HUMAN	yes	no	0	0	1	0	1	1	1	1	1		1	1	1	1	43.481	43.481	3	3.0138E-09	12616	20190902_JH_WT_Ubi_3	120.33	74.44	42906000	6552700	3594500	13420000	2934700	0	2967200	1909100	6273300	5254900			5869	1536	5161	16632;16633;16634;16635;16636;16637;16638;16639	17480;17481;17482;17483;17484;17485;17486;17487;17488	17488		1526		9
YIYDQCPAVAGYGPIEQLPDYNR	Unmodified	2701.2483	0.24825214	744	sp|P31930|QCR1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	46.614	46.614	3	2.6302E-12	13607	20190902_JH_WT_Ubi_3	132.86	98.169	12080000	0	0	6043700	0	0	0	0	3068100	2968100			5870	744	5162	16640;16641;16642	17489;17490;17491;17492	17492				4
YKDDADSPTEDGDKPR	GlyGly (K)	1921.829	0.82897809	236	sp|O60291-4|MGRN1_HUMAN;sp|O60291|MGRN1_HUMAN;sp|O60291-3|MGRN1_HUMAN;sp|O60291-2|MGRN1_HUMAN	yes	no	0	0	1	0	2					1					17.712	17.712	3	0.022206	3673	20190902_JH_EV_Ubi_3	72.428	42.438	0	0	0	0	0	0	0	0	0	0			5871	236	5163	16643	17493	17493		210		1
YKSTTSVSEEDVSSR	GlyGly (K)	1787.8174	0.81735077	1785	sp|Q96IZ0|PAWR_HUMAN	yes	yes	0	0	1	0	1		1					1	1	1	21.669	21.669	3	0.0078538	5531	20190902_JH_WT_Ubi_3	72.898	32.422	4533900	0	554720	0	0	0	0	1276900	0	2702300			5872	1785	5164	16644;16645;16646;16647	17494;17495;17496;17497	17497		1751		4
YLAEVAAGDDK	Unmodified	1150.5506	0.55061839	1078;1079	sp|P63104|1433Z_HUMAN;sp|P63104-2|1433Z_HUMAN	no	no	0	0	0	0	0						1				27.488	27.488	2	0.012409	6450	20190902_JH_MUT_Ubi_2	85.355	33.5	4675200	0	0	0	0	0	4675200	0	0	0			5873	1078;1079	5165	16648	17498	17498				0
YLEGAAGQQPTAPDKSK	GlyGly (K)	1873.917	0.91700524	343	sp|O95436|NPT2B_HUMAN;sp|O95436-2|NPT2B_HUMAN	yes	no	0	0	1	0	1				1			1			23.255	23.255	3	1.8193E-19	4895	20190902_JH_EV_Ubi_2	167.18	127.55	37711000	0	0	0	25704000	0	0	12007000	0	0			5874	343	5166	16649;16650	17499;17500	17499		315;316		2
YLEGAAGQQPTAPDKSK	GlyGly (K);Deamidation (NQ)	1874.901	0.90102082	343	sp|O95436|NPT2B_HUMAN;sp|O95436-2|NPT2B_HUMAN	yes	no	0	1	1	0	1					1					24.31	24.31	3	0.0052363	5174	20190902_JH_EV_Ubi_3	89.232	54.028	1229700	0	0	0	0	1229700	0	0	0	0			5875	343	5166	16651	17501	17501	807	315;316		1
YLFLQNLPSALVSHVLNPQPGEK	Unmodified	2563.3799	0.37985866	1685	sp|Q8TEA1|NSUN6_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1		1	52.566	52.566	3	2.8632E-07	14002	20190821_JH_MUT_Ubi	103.9	76.292	6332900	0	2264000	2392400	0	0	488590	511370	0	676620			5876	1685	5167	16652;16653;16654;16655;16656	17502;17503;17504;17505;17506;17507;17508	17502				7
YLLETSGNLDGLEYK	Unmodified	1713.8461	0.8461317	845	sp|P43490|NAMPT_HUMAN	yes	yes	0	0	0	0	0									1	42.309	42.309	2	0.0088312	12273	20190902_JH_WT_Ubi_3	73.273	33.119	1050100	0	0	0	0	0	0	0	0	1050100			5877	845	5168	16657	17509	17509				1
YLLHGLECVVAMHQAQLISK	Oxidation (M)	2325.1973	0.19734296	969	sp|P55010|IF5_HUMAN	yes	yes	0	0	0	1	0		1	1				1		1	39.364	39.364	3;4	0.0037541	9677	20190821_JH_WT_Ubi	65.085	37.936	16010000	0	1770400	7388000	0	0	0	2042400	0	4808800			5878	969	5169	16658;16659;16660;16661	17510;17511;17512;17513	17512			605	4
YLLHGLECVVAMHQAQLISK	Unmodified	2309.2024	0.20242834	969	sp|P55010|IF5_HUMAN	yes	yes	0	0	0	0	0		1	1			1				41.326	41.326	3	2.6162E-18	10555	20190821_JH_WT_Ubi	149.95	126.23	17901000	0	3708500	12584000	0	0	1609000	0	0	0			5879	969	5169	16662;16663;16664	17514;17515;17516	17516				3
YLLPLSALGTVAGAAVLLK	Unmodified	1869.1339	0.13392129	1632	sp|Q8NBN7|RDH13_HUMAN	yes	yes	0	0	0	0	0		1								56.175	56.175	3	0.0024268	14959	20190821_JH_MUT_Ubi	70.167	58.412	877750	0	877750	0	0	0	0	0	0	0			5880	1632	5170	16665	17517	17517				1
YLQDNPASGEKFAYVPFGAGR	GlyGly (K)	2400.1499	0.14985872	1391	sp|Q16850-2|CP51A_HUMAN;sp|Q16850|CP51A_HUMAN	yes	no	0	0	1	0	1									1	39.651	39.651	3	1.5352E-05	11377	20190902_JH_WT_Ubi_3	89.604	58.09	3455700	0	0	0	0	0	0	0	0	3455700			5881	1391	5171	16666	17518	17518		1424		1
YLSEVASGDNKQTTVSNSQQAYQEAFEISK	GlyGly (K)	3435.6066	0.6066363	749	sp|P31946-2|1433B_HUMAN;sp|P31946|1433B_HUMAN	yes	no	0	0	1	0	1			1	1		1	1	1	1	37.518	37.518	3	6.8027E-32	11121	20190902_JH_WT_Ubi_2	150.06	127.52	36228000	0	0	14866000	1973000	0	3444200	2647200	4908200	8388500			5882	749	5172	16667;16668;16669;16670;16671;16672	17519;17520;17521;17522;17523;17524	17523		721		6
YLYSSEDYIKSGALLACGIVNSGVR	GlyGly (K);Deamidation (NQ)	2849.3906	0.39055928	1224	sp|Q13200|PSMD2_HUMAN;sp|Q13200-2|PSMD2_HUMAN;sp|Q13200-3|PSMD2_HUMAN	yes	no	0	1	1	0	1		1								47.221	47.221	3	0.010033	12295	20190821_JH_MUT_Ubi	73.459	42.874	714300	0	714300	0	0	0	0	0	0	0			5883	1224	5173	16673	17525	17525	400	1292		1
YLYSSEDYIKSGALLACGIVNSGVR	GlyGly (K)	2848.4065	0.40654369	1224	sp|Q13200|PSMD2_HUMAN;sp|Q13200-2|PSMD2_HUMAN;sp|Q13200-3|PSMD2_HUMAN	yes	no	0	0	1	0	1		1	1			1	1	1	1	48.197	48.197	3	2.6326E-20	12688	20190821_JH_MUT_Ubi	144.33	106.93	18581000	0	3689200	7822000	0	0	1164900	1491200	1688200	2725000			5884	1224	5173	16674;16675;16676;16677;16678;16679	17526;17527;17528;17529;17530;17531	17526		1292		6
YMGSHIPESPLQFYVNYPNSGSVSAYGPGLVYGVANK	Oxidation (M)	3977.8934	0.89343961	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	1	0	1	1	1				1	1		49.511	49.511	3	9.0508E-08	13809	20190821_JH_WT_Ubi	78.909	55.161	23558000	4418900	4152000	7287900	0	0	0	1294000	6405700	0			5885	282	5174	16680;16681;16682;16683;16684	17532;17533;17534;17535;17536	17535			127	5
YMGSHIPESPLQFYVNYPNSGSVSAYGPGLVYGVANK	Unmodified	3961.8985	0.89852499	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0			1							50.367	50.367	3	6.6491E-14	14159	20190821_JH_WT_Ubi	102.6	80.254	1781600	0	0	1781600	0	0	0	0	0	0			5886	282	5174	16685	17537	17537				1
YMHSGPVVAMVWEGLNVVK	2 Oxidation (M)	2147.0544	0.054367116	652;573	sp|P22392-2|NDKB_HUMAN;sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	no	no	0	0	0	2	0		1	1			1	1	1	1	41.912	41.912	3	7.7055E-18	10789	20190821_JH_WT_Ubi	147.64	86.721	59607000	0	6181200	18002000	0	0	4025100	6998800	10120000	14280000			5887	652;573	5175	16686;16687;16688;16689;16690;16691	17538;17539;17540;17541;17542;17543;17544	17541			360;361	7
YMHSGPVVAMVWEGLNVVK	Oxidation (M)	2131.0595	0.059452494	652;573	sp|P22392-2|NDKB_HUMAN;sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	no	no	0	0	0	1	0		2	2			2	2	2	2	45.023	45.023	3	5.0537E-09	11437	20190821_JH_WT_Ubi	127.83	70.507	65937000	0	8609800	34063000	0	0	3886900	3529400	5811300	10037000			5888	652;573	5175	16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703	17545;17546;17547;17548;17549;17550;17551;17552;17553;17554;17555;17556;17557;17558	17552			360;361	14
YMHSGPVVAMVWEGLNVVK	Unmodified	2115.0645	0.064537872	652;573	sp|P22392-2|NDKB_HUMAN;sp|P15531|NDKA_HUMAN;sp|P15531-2|NDKA_HUMAN	no	no	0	0	0	0	0		1	1			1			1	48.607	48.607	3	2.8986E-06	12842	20190821_JH_MUT_Ubi	112.3	69.183	12885000	0	2956300	9234700	0	0	693790	0	0	0			5889	652;573	5175	16704;16705;16706;16707	17559;17560;17561;17562	17559				4
YMMIVDPAISSSGPAGSYRPYDEGLR	2 Oxidation (M)	2863.3157	0.31567977	505	sp|P10253|LYAG_HUMAN	yes	yes	0	0	0	2	1			1							38.878	38.878	3	0.003928	9489	20190821_JH_WT_Ubi	58.914	29.53	2516500	0	0	2516500	0	0	0	0	0	0			5890	505	5176	16708	17563	17563			293;294	0
YMNSGPVVAMVWEGLNVVK	2 Oxidation (M)	2124.0384	0.038382701	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN	yes	no	0	0	0	2	0		1	1			1	1	1	1	48.357	48.357	3	4.5842E-09	12695	20190902_JH_MUT_Ubi_3	127.97	97.424	14851000	0	1497700	5749500	0	0	1695300	1524900	1952300	2431200			5891	652	5177	16709;16710;16711;16712;16713;16714	17564;17565;17566;17567;17568;17569;17570	17566			403;404	7
YMNSGPVVAMVWEGLNVVK	Oxidation (M)	2108.0435	0.043468079	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN	yes	no	0	0	0	1	0		1	1				1			53.555	53.555	3	4.7319E-18	15233	20190821_JH_WT_Ubi	152.59	114.95	10325000	0	3454700	6243000	0	0	0	627100	0	0			5892	652	5177	16715;16716;16717	17571;17572;17573;17574	17574			403;404	4
YMNSGPVVAMVWEGLNVVK	Unmodified	2092.0486	0.048553457	652	sp|P22392-2|NDKB_HUMAN;sp|P22392|NDKB_HUMAN;sp|O60361|NDK8_HUMAN	yes	no	0	0	0	0	0		1								54.692	54.692	3	6.5477E-09	14605	20190821_JH_MUT_Ubi	123.54	86.767	1442700	0	1442700	0	0	0	0	0	0	0			5893	652	5177	16718	17575	17575				1
YMSVNQAAQQLLEIVQNQR	Oxidation (M)	2248.127	0.12701479	1939	sp|Q9H2P9-3|DPH5_HUMAN;sp|Q9H2P9-2|DPH5_HUMAN;sp|Q9H2P9-6|DPH5_HUMAN;sp|Q9H2P9-4|DPH5_HUMAN;sp|Q9H2P9|DPH5_HUMAN;sp|Q9H2P9-5|DPH5_HUMAN	yes	no	0	0	0	1	0	1									51.491	51.491	3	3.3502E-06	13934	20190821_JH_EV_Ubi	112.91	67.374	875710	875710	0	0	0	0	0	0	0	0			5894	1939	5178	16719	17576	17576			1059	1
YNACILEYKQSGESIDIITR	GlyGly (K)	2486.2111	0.21113835	1374	sp|Q16531|DDB1_HUMAN	yes	yes	0	0	1	0	1	1	1								40.436	40.436	3	4.2848E-05	9711	20190821_JH_MUT_Ubi	99.413	71.019	3358100	1202100	2156000	0	0	0	0	0	0	0			5895	1374	5179	16720;16721	17577;17578	17578		1415		2
YNAYNYTDMDGNLLQWVPK	Oxidation (M);GlyGly (K);2 Deamidation (NQ)	2436.058	0.057991749	2182	sp|Q9UP79|ATS8_HUMAN	yes	yes	0	2	1	1	0						1				24.43	24.43	3	0.037048	5504	20190902_JH_MUT_Ubi_2	40.515	19.032	0	0	0	0	0	0	0	0	0	0			5896	2182	5180	16722	17579	17579	694;695			1
YNDKHIPGSPFTAK	GlyGly (K)	1687.8318	0.83181904	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	1	0	1		1				1				26.184	26.184	3	0.029074	4671	20190821_JH_MUT_Ubi	57.425	9.3105	3373300	0	1897300	0	0	0	1476000	0	0	0			5897	282	5181	16723;16724	17580;17581	17580		276		2
YNLAIEEHCTFGDPIV	Unmodified	1876.8665	0.86654957	2107	sp|Q9UBR2|CATZ_HUMAN	yes	yes	0	0	0	0	0			1							45.442	45.442	2	0.0035761	12190	20190821_JH_WT_Ubi	79.659	36.575	4883300	0	0	4883300	0	0	0	0	0	0			5898	2107	5182	16725	17582	17582				1
YNLGSSAMK	Oxidation (M);GlyGly (K)	1099.4968	0.49680868	1602	sp|Q8IZY5|BLID_HUMAN	yes	yes	0	0	1	1	0								1		20.152	20.152	2	0.027198	5018	20190902_JH_WT_Ubi_2	67.169	11.159	144660000	0	0	0	0	0	0	0	144660000	0			5899	1602	5183	16726	17583	17583		1596	940	0
YNMGLPVDFDQYNELHLPAVILK	Oxidation (M)	2704.3571	0.3570743	1180	sp|Q07960|RHG01_HUMAN	yes	yes	0	0	0	1	0		1	1							51.636	51.636	3	0.0058296	14518	20190821_JH_WT_Ubi	57.248	30.469	3206800	0	1367500	1839300	0	0	0	0	0	0			5900	1180	5184	16727;16728	17584;17585	17585			737	2
YNMPFKAQIQK	2 Deamidation (NQ)	1368.6748	0.67477304	1684	sp|Q8TE73|DYH5_HUMAN	yes	yes	0	2	0	0	1								1		25.444	25.444	2	0.028215	6849	20190902_JH_WT_Ubi_2	61.679	18.961	62699000	0	0	0	0	0	0	0	62699000	0			5901	1684	5185	16729	17586	17586	550;1163			0
YNPMRKASNQNENLILHQNIQILK	GlyGly (K);2 Deamidation (NQ)	2994.5345	0.53453817	1994	sp|Q9HCZ1|ZN334_HUMAN	yes	yes	0	2	1	0	2					1					45.947	45.947	4	0.035808	11607	20190902_JH_EV_Ubi_3	41.257	14.939	966060	0	0	0	0	966060	0	0	0	0			5902	1994	5186	16730	17587	17587	638;639			0
YNSWPSSLQELLRPTFPGVIR	Unmodified	2459.2961	0.29612903	2066	sp|Q9NYU2-2|UGGG1_HUMAN;sp|Q9NYU2|UGGG1_HUMAN	yes	no	0	0	0	0	1		1	1					1		52.653	52.653	3	0.0012621	15695	20190902_JH_WT_Ubi_2	81.01	59.334	23187000	0	3429000	7703400	0	0	0	0	12055000	0			5903	2066	5187	16731;16732;16733	17588;17589;17590	17590				3
YPHLVAGALAASAPVLAVAGLGDSNQFFR	Unmodified	2911.5345	0.53446182	2130	sp|Q9UHL4|DPP2_HUMAN	yes	yes	0	0	0	0	0			1					1		53.779	53.779	3	0.00013154	16028	20190902_JH_WT_Ubi_2	70.704	51.823	17626000	0	0	12469000	0	0	0	0	5157200	0			5904	2130	5188	16734;16735	17591;17592	17592				2
YPIEHGIITNWDDMEK	Oxidation (M)	1975.8986	0.89857798	1094	sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	yes	no	0	0	0	1	0	1	1	1			1	1	1	1	35.179	35.179	3	3.4157E-15	8071	20190821_JH_WT_Ubi	158.89	122.45	453910000	4656000	8601500	135570000	0	0	14271000	14590000	159750000	116470000			5905	1094	5189	16736;16737;16738;16739;16740;16741;16742	17593;17594;17595;17596;17597;17598;17599	17597			675	7
YPIEHGIITNWDDMEK	Unmodified	1959.9037	0.90366336	1094	sp|P68133|ACTS_HUMAN;sp|P68032|ACTC_HUMAN;sp|P63267|ACTH_HUMAN;sp|P62736|ACTA_HUMAN	yes	no	0	0	0	0	0		1	1	1		1	1	1	1	38.044	38.044	3	3.9604E-10	10772	20190902_JH_WT_Ubi_3	141.65	107.16	140620000	0	4729500	68799000	1467700	0	5741500	5383500	26616000	27882000			5906	1094	5189	16743;16744;16745;16746;16747;16748;16749	17600;17601;17602;17603;17604;17605;17606	17606				7
YPIFFFGTHETAFLGPK	Unmodified	1970.9931	0.99307071	1533	sp|Q9Y3E1|HDGR3_HUMAN;sp|Q7Z4V5-2|HDGR2_HUMAN;sp|Q7Z4V5|HDGR2_HUMAN;sp|Q7Z4V5-4|HDGR2_HUMAN;sp|Q7Z4V5-3|HDGR2_HUMAN	yes	no	0	0	0	0	0			1							47.854	47.854	3	0.0045911	13186	20190821_JH_WT_Ubi	69.331	10.037	6170600	0	0	6170600	0	0	0	0	0	0			5907	1533	5190	16750	17607	17607				1
YPNLQVIGGNVVTAAQAK	Unmodified	1841.9999	0.99994701	533	sp|P12268|IMDH2_HUMAN	yes	yes	0	0	0	0	0	1			1	1		1			41.768	41.768	2;3	2.0088E-10	10873	20190902_JH_MUT_Ubi_3	136.14	85.942	3615200	1140400	0	0	738500	486520	0	1249800	0	0			5908	533	5191	16751;16752;16753;16754	17608;17609;17610;17611	17611				3
YQEAAPNVANNTGPHAASCFGAKK	GlyGly (K)	2616.2139	0.21393231	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	0	1	0	1		1		1	1	2	1			25.42	25.42	3;4	0.00062498	5508	20190902_JH_MUT_Ubi_3	70.072	43.235	47681000	0	6632900	0	3048800	2936200	23691000	11372000	0	0			5909	257	5192	16755;16756;16757;16758;16759;16760	17612;17613;17614;17615;17616;17617;17618	17618		244;245		7
YQEAAPNVANNTGPHAASCFGAKK	GlyGly (K);Deamidation (NQ)	2617.1979	0.1979479	257	sp|O60716-3|CTND1_HUMAN;sp|O60716-5|CTND1_HUMAN;sp|O60716-11|CTND1_HUMAN;sp|O60716-21|CTND1_HUMAN;sp|O60716-19|CTND1_HUMAN;sp|O60716-13|CTND1_HUMAN;sp|O60716|CTND1_HUMAN;sp|O60716-18|CTND1_HUMAN;sp|O60716-2|CTND1_HUMAN;sp|O60716-9|CTND1_HUMAN;sp|O60716-10|CTND1_HUMAN;sp|O60716-17|CTND1_HUMAN;sp|O60716-7|CTND1_HUMAN;sp|O60716-8|CTND1_HUMAN;sp|O60716-15|CTND1_HUMAN;sp|O60716-16|CTND1_HUMAN;sp|O60716-29|CTND1_HUMAN;sp|O60716-23|CTND1_HUMAN;sp|O60716-27|CTND1_HUMAN;sp|O60716-24|CTND1_HUMAN;sp|O60716-26|CTND1_HUMAN;sp|O60716-4|CTND1_HUMAN;sp|O60716-6|CTND1_HUMAN;sp|O60716-25|CTND1_HUMAN;sp|O60716-12|CTND1_HUMAN;sp|O60716-14|CTND1_HUMAN;sp|O60716-22|CTND1_HUMAN;sp|O60716-20|CTND1_HUMAN;sp|O60716-31|CTND1_HUMAN;sp|O60716-32|CTND1_HUMAN;sp|O60716-28|CTND1_HUMAN;sp|O60716-30|CTND1_HUMAN	yes	no	0	1	1	0	1		1								26.863	26.863	4	0.020207	4719	20190821_JH_MUT_Ubi	41.296	17.849	3150700	0	3150700	0	0	0	0	0	0	0			5910	257	5192	16761	17619	17619	92;93	244;245		1
YQLLQLVEPFGVISNHLILNK	Unmodified	2437.3733	0.37331671	841	sp|P43243|MATR3_HUMAN;sp|P43243-2|MATR3_HUMAN	yes	no	0	0	0	0	0		1	1			1	1	1	1	53.934	53.934	3	3.2146E-29	14367	20190821_JH_MUT_Ubi	163.45	105.44	170610000	0	48129000	78675000	0	0	4604000	3943000	30850000	4406200			5911	841	5193	16762;16763;16764;16765;16766;16767	17620;17621;17622;17623;17624;17625;17626	17620				7
YQLSIHKNPNTSEPQHLLVMK	Oxidation (M);GlyGly (K)	2606.3275	0.32750551	418	sp|P05023-4|AT1A1_HUMAN;sp|P05023|AT1A1_HUMAN;sp|P05023-3|AT1A1_HUMAN;sp|P05023-2|AT1A1_HUMAN	yes	no	0	0	1	1	1		1								29.065	29.065	4	0.028187	5524	20190821_JH_MUT_Ubi	40.759	16.532	1198200	0	1198200	0	0	0	0	0	0	0			5912	418	5194	16768	17627	17627		401	215	1
YQNIWNINLQLRPSLITGIMK	Oxidation (M)	2530.373	0.37299914	2210	sp|Q9Y2Q3-3|GSTK1_HUMAN;sp|Q9Y2Q3|GSTK1_HUMAN;sp|Q9Y2Q3-2|GSTK1_HUMAN;sp|Q9Y2Q3-4|GSTK1_HUMAN	yes	no	0	0	0	1	1			1							49.257	49.257	3	2.7787E-06	13702	20190821_JH_WT_Ubi	105.06	83.662	8890200	0	0	8890200	0	0	0	0	0	0			5913	2210	5195	16769	17628	17628			1145	1
YQPGLSYDQPKCSPEK	GlyGly (K)	2009.9153	0.91529068	935	sp|P52569|CTR2_HUMAN;sp|P52569-2|CTR2_HUMAN;sp|P52569-3|CTR2_HUMAN	yes	no	0	0	1	0	1	1		1					1	1	26.594	26.594	3	0.0011134	7203	20190902_JH_WT_Ubi_2	91.969	59.778	20748000	1683700	0	3919100	0	0	0	0	7664600	7480600			5914	935	5196	16770;16771;16772;16773	17629;17630;17631;17632	17631		902;903		4
YQSFNNQSDLEK	4 Deamidation (NQ)	1475.594	0.59399934	890	sp|P49642|PRI1_HUMAN	yes	yes	0	4	0	0	0	1									19.915	19.915	2	0.036813	3376	20190821_JH_EV_Ubi	41.399	21.409	0	0	0	0	0	0	0	0	0	0			5915	890	5197	16774	17633	17633	308;309			1
YSAGCIYYYPSFHYTHNPSQAEK	Unmodified	2782.2122	0.21220098	349	sp|O95487-2|SC24B_HUMAN;sp|O95487|SC24B_HUMAN;sp|O95487-3|SC24B_HUMAN	yes	no	0	0	0	0	0			1					1	2	33.674	33.674	3;4	0.0010992	7543	20190821_JH_WT_Ubi	66.702	48.147	25947000	0	0	11373000	0	0	0	0	7507100	7066500			5916	349	5198	16775;16776;16777;16778	17634;17635;17636;17637	17634				4
YSAGSVYYYPSYHHQHNPVQVQK	Unmodified	2751.283	0.28299816	348	sp|O95486|SC24A_HUMAN	yes	yes	0	0	0	0	0			1						2	27.226	27.226	3;4	3.3248E-05	7107	20190902_JH_WT_Ubi_3	85.937	58.217	25068000	0	0	10040000	0	0	0	0	0	15028000			5917	348	5199	16779;16780;16781	17638;17639;17640	17639				3
YSAHSSHVTNVSFTHNDSHLISTGGK	Unmodified	2782.3059	0.30591844	1985	sp|Q9HC35-2|EMAL4_HUMAN;sp|Q9HC35|EMAL4_HUMAN	yes	no	0	0	0	0	0	1	1	1	1				2	1	24.836	24.836	3;4	1.0455E-76	6562	20190902_JH_WT_Ubi_2	215.43	174.44	55967000	4668800	1542800	16596000	3220000	0	0	0	16628000	13312000			5918	1985	5200	16782;16783;16784;16785;16786;16787;16788	17641;17642;17643;17644;17645;17646;17647	17646				7
YSAHSSHVTNVSFTHNDSHLISTGGK	Deamidation (NQ)	2783.2899	0.28993403	1985	sp|Q9HC35-2|EMAL4_HUMAN;sp|Q9HC35|EMAL4_HUMAN	yes	no	0	1	0	0	0	1	1	1			1		1	1	26.723	26.723	4	1.7352E-12	7216	20190902_JH_WT_Ubi_2	113.08	82.423	17838000	1579000	431940	4042400	0	0	1693200	0	6102900	3988500			5919	1985	5200	16789;16790;16791;16792;16793;16794	17648;17649;17650;17651;17652;17653	17652	631			6
YSGLCPHVVVLVATVR	Unmodified	1768.9658	0.96581011	527	sp|P11586|C1TC_HUMAN	yes	yes	0	0	0	0	0		1	1			1	1			39.892	39.892	3	3.8378E-10	9653	20190821_JH_MUT_Ubi	141.82	94.194	27294000	0	6892900	9537700	0	0	7382400	3480900	0	0			5920	527	5201	16795;16796;16797;16798	17654;17655;17656;17657	17654				4
YSNVIFLEVDVDDCQDVASECEVK	Unmodified	2832.247	0.24699109	510	sp|P10599|THIO_HUMAN	yes	yes	0	0	0	0	0			1							49.156	49.156	3	0.0037933	13688	20190821_JH_WT_Ubi	57.238	35.336	3218200	0	0	3218200	0	0	0	0	0	0			5921	510	5202	16799	17658	17658				1
YSPVSKAVLGDDEITR	GlyGly (K)	1862.9374	0.93740633	1204	sp|Q12959-4|DLG1_HUMAN;sp|Q12959-2|DLG1_HUMAN;sp|Q12959-8|DLG1_HUMAN;sp|Q12959-9|DLG1_HUMAN;sp|Q12959-5|DLG1_HUMAN;sp|Q12959-3|DLG1_HUMAN;sp|Q12959-6|DLG1_HUMAN;sp|Q12959|DLG1_HUMAN;sp|Q12959-7|DLG1_HUMAN	yes	no	0	0	1	0	1							1			32.721	32.721	3	0.022894	7949	20190902_JH_MUT_Ubi_3	55.885	28.916	1630300	0	0	0	0	0	0	1630300	0	0			5922	1204	5203	16800	17659	17659		1272		1
YSSDPTGALTEDSIDDTFLPVPEYINQSVPK	Unmodified	3397.6089	0.60892771	382	sp|P00533|EGFR_HUMAN	yes	yes	0	0	0	0	0									1	54.318	54.318	3	0.012362	15646	20190902_JH_WT_Ubi_3	38.349	7.3912	4650300	0	0	0	0	0	0	0	0	4650300			5923	382	5204	16801	17660	17660				1
YSYISYSNNKDGETSLVTGEADEGR	GlyGly (K)	2868.2686	0.26858946	1790	sp|Q96JK2-2|DCAF5_HUMAN;sp|Q96JK2-3|DCAF5_HUMAN;sp|Q96JK2|DCAF5_HUMAN	yes	no	0	0	1	0	1							1			33.981	33.981	3	0.0043158	8396	20190902_JH_MUT_Ubi_3	57.21	39.78	551040	0	0	0	0	0	0	551040	0	0			5924	1790	5205	16802	17661	17661		1757		1
YTDQGGEEEEDYESEEQLQHR	Unmodified	2570.0317	0.031713237	276	sp|O75208|COQ9_HUMAN;sp|O75208-2|COQ9_HUMAN	yes	no	0	0	0	0	0			1					1		27.889	27.889	3	0.00078236	7699	20190902_JH_WT_Ubi_2	73.138	54.353	4665500	0	0	2284100	0	0	0	0	2381400	0			5925	276	5206	16803;16804	17662;17663	17663				2
YTEFYHVPTHSDASK	Unmodified	1780.8057	0.80566387	1783	sp|Q96HC4-7|PDLI5_HUMAN;sp|Q96HC4-4|PDLI5_HUMAN;sp|Q96HC4|PDLI5_HUMAN;sp|Q96HC4-6|PDLI5_HUMAN;sp|Q96HC4-3|PDLI5_HUMAN;sp|Q96HC4-2|PDLI5_HUMAN	yes	no	0	0	0	0	0								1	1	25.868	25.868	3	0.010087	6995	20190902_JH_WT_Ubi_2	65.472	39.824	9432600	0	0	0	0	0	0	0	4518500	4914200			5926	1783	5207	16805;16806	17664;17665	17664				2
YTIVVSATASDAAPLQYLAPYSGCSMGEYFR	Oxidation (M)	3403.5741	0.5740793	680	sp|P25705-2|ATPA_HUMAN;sp|P25705|ATPA_HUMAN;sp|P25705-3|ATPA_HUMAN	yes	no	0	0	0	1	0								1		52.78	52.78	3	1.5414E-07	15718	20190902_JH_WT_Ubi_2	90.78	66.43	2887800	0	0	0	0	0	0	0	2887800	0			5927	680	5208	16807	17666	17666			420	1
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	Unmodified	3097.5529	0.55293316	412	sp|P04792|HSPB1_HUMAN	yes	yes	0	0	0	0	0			1					1		50.98	50.98	3	0.00014919	14318	20190821_JH_WT_Ubi	67.463	23.969	2390300	0	0	1581400	0	0	0	0	808910	0			5928	412	5209	16808;16809	17667;17668;17669	17668				3
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	Oxidation (M)	3113.5478	0.54784778	412	sp|P04792|HSPB1_HUMAN	yes	yes	0	0	0	1	0								1	1	48.912	48.912	3	5.1154E-05	14280	20190902_JH_WT_Ubi_3	74.392	49.995	5988700	0	0	0	0	0	0	0	1999200	3989500			5929	412	5209	16810;16811	17670;17671	17671			208	2
YTPTQQGNMQVLVTYGGDPIPK	Oxidation (M)	2422.1839	0.18386096	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	1	0	1	1					1			39.109	39.109	3	1.511E-09	9871	20190902_JH_MUT_Ubi_3	122.3	88.944	9395600	4210000	3403700	0	0	0	0	1781900	0	0			5930	282	5210	16812;16813;16814	17672;17673;17674;17675;17676	17675			128	5
YTPTQQGNMQVLVTYGGDPIPK	Unmodified	2406.1889	0.18894634	282	sp|O75369-2|FLNB_HUMAN;sp|O75369-9|FLNB_HUMAN;sp|O75369|FLNB_HUMAN;sp|O75369-8|FLNB_HUMAN;sp|O75369-7|FLNB_HUMAN;sp|O75369-6|FLNB_HUMAN;sp|O75369-3|FLNB_HUMAN;sp|O75369-5|FLNB_HUMAN;sp|O75369-4|FLNB_HUMAN	yes	no	0	0	0	0	0	1	1				1				43.085	43.085	3	9.1248E-06	11425	20190821_JH_EV_Ubi	87.793	46.28	5471400	1498600	2268800	0	0	0	1704000	0	0	0			5931	282	5210	16815;16816;16817	17677;17678;17679	17677				3
YTPVQQGPVGVNVTYGGDPIPK	Unmodified	2285.1692	0.16919718	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0	1	1	1		1	1	1	1	1	40.685	40.685	3	2.7535E-22	12152	20190902_JH_WT_Ubi_2	153.83	115.74	50384000	6740000	3338700	13356000	0	4704500	3524600	4621000	7906900	6191900			5932	637	5211	16818;16819;16820;16821;16822;16823;16824;16825	17680;17681;17682;17683;17684;17685;17686;17687;17688	17686				9
YTVQDESHSEWVSCVR	Unmodified	1980.8636	0.86358946	1085	sp|P63244|RACK1_HUMAN	yes	yes	0	0	0	0	0			1					1	1	31.661	31.661	3	0.00032073	9018	20190902_JH_WT_Ubi_2	100.68	58.212	16193000	0	0	5406300	0	0	0	0	5960800	4825700			5933	1085	5212	16826;16827;16828	17689;17690;17691	17690				3
YVASYLLAALGGNSSPSAK	Unmodified	1867.968	0.96797818	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	0	0	0			1						1	47.725	47.725	3	0.0094588	13179	20190821_JH_WT_Ubi	56.906	24.172	4238400	0	0	2593200	0	0	0	0	0	1645200			5934	427	5213	16829;16830	17692;17693	17692				2
YVASYLLAALGGNSSPSAKDIK	GlyGly (K)	2338.2169	0.21687565	427	sp|P05387|RLA2_HUMAN	yes	yes	0	0	1	0	1									1	43.55	43.55	3	1.2983E-05	12693	20190902_JH_WT_Ubi_3	87.676	58.785	1530700	0	0	0	0	0	0	0	0	1530700			5935	427	5214	16831	17694	17694		407		1
YVATLGVEVHPLVFHTNR	Unmodified	2051.0952	0.095244374	1059	sp|P62826|RAN_HUMAN	yes	yes	0	0	0	0	0		1	1			1		1	1	37.203	37.203	3;4	2.8159E-06	8873	20190821_JH_WT_Ubi	118.19	82.3	754450000	0	59076000	295070000	0	0	68765000	0	102940000	228590000			5936	1059	5215	16832;16833;16834;16835;16836	17695;17696;17697;17698;17699	17697				5
YVATLGVEVHPLVFHTNR	Deamidation (NQ)	2052.0793	0.079259959	1059	sp|P62826|RAN_HUMAN	yes	yes	0	1	0	0	0								1		38.588	38.588	4	0.022691	11360	20190902_JH_WT_Ubi_2	42.813	16.378	1243000	0	0	0	0	0	0	0	1243000	0			5937	1059	5215	16837	17700	17700	339			1
YVAVMPPHIGDQPLTGAYTVTLDGR	Oxidation (M)	2686.3425	0.34248687	722	sp|P30043|BLVRB_HUMAN	yes	yes	0	0	0	1	0	1	1								43.858	43.858	3	7.6797E-13	11592	20190821_JH_EV_Ubi	121.33	90.563	7985600	3967900	4017700	0	0	0	0	0	0	0			5938	722	5216	16838;16839	17701;17702	17701			452	2
YVAVMPPHIGDQPLTGAYTVTLDGR	Unmodified	2670.3476	0.34757225	722	sp|P30043|BLVRB_HUMAN	yes	yes	0	0	0	0	0		1	1				1			45.347	45.347	3	7.6816E-05	11915	20190902_JH_MUT_Ubi_3	81.224	56.349	14460000	0	3628300	8390500	0	0	0	2441100	0	0			5939	722	5216	16840;16841;16842	17703;17704;17705;17706	17704				4
YVELFLNSTAGASGGAYEHR	Unmodified	2141.0178	0.017781914	748	sp|P31943|HNRH1_HUMAN	yes	yes	0	0	0	0	0	1	1	1	1		1	1			37.887	37.887	3	7.4172E-05	8843	20190821_JH_MUT_Ubi	92.474	55.297	38881000	5702900	6590600	16265000	1382600	0	5020900	3919100	0	0			5940	748	5217	16843;16844;16845;16846;16847;16848	17707;17708;17709;17710;17711;17712	17709				6
YVEPIEDVPCGNIVGLVGVDQFLVK	Unmodified	2758.4252	0.42515387	545	sp|P13639|EF2_HUMAN	yes	yes	0	0	0	0	0			1					1	1	54.98	54.98	3	7.7646E-10	16366	20190902_JH_WT_Ubi_2	99.964	73.521	21739000	0	0	15906000	0	0	0	0	3598300	2233800			5941	545	5218	16849;16850;16851	17713;17714;17715;17716	17715				4
YVWLVYEQDRPLKCDEPILSNR	GlyGly (K)	2906.4385	0.43851252	729	sp|P30086|PEBP1_HUMAN	yes	yes	0	0	1	0	2		1								41.159	41.159	3	0.024479	9977	20190821_JH_MUT_Ubi	66.777	38.815	735160	0	735160	0	0	0	0	0	0	0			5942	729	5219	16852	17717	17717		708		1
YWPQEAGEYAVHVLCNSEDIR	Unmodified	2535.1489	0.14887244	637	sp|P21333-2|FLNA_HUMAN;sp|P21333|FLNA_HUMAN	yes	no	0	0	0	0	0			1					1	1	46.109	46.109	3	0.0016212	12412	20190821_JH_WT_Ubi	68.567	30.568	14650000	0	0	6721300	0	0	0	0	5688000	2240900			5943	637	5220	16853;16854;16855	17718;17719;17720	17718				3
YWSQQIEESTTVVTTQSAEVGAAETTLTELR	Unmodified	3427.6631	0.66308855	430	sp|P05783|K1C18_HUMAN	yes	yes	0	0	0	0	0	1	1	1				1			50.78	50.78	3	2.5783E-73	14247	20190821_JH_WT_Ubi	195.41	156.2	19969000	3511600	3286000	12477000	0	0	0	694350	0	0			5944	430	5221	16856;16857;16858;16859	17721;17722;17723;17724;17725	17724				5
YWSQQIEESTTVVTTQSAEVGAAETTLTELR	Deamidation (NQ)	3428.6471	0.64710413	430	sp|P05783|K1C18_HUMAN	yes	yes	0	1	0	0	0		1								51.101	51.101	3	0.0061203	13526	20190821_JH_MUT_Ubi	62.858	23.469	0	0	0	0	0	0	0	0	0	0			5945	430	5221	16860	17726	17726	828			1
YWTLTATGGVQSTASSK	Unmodified	1756.8632	0.86317875	1382	sp|Q16658|FSCN1_HUMAN	yes	yes	0	0	0	0	0				1						36.65	36.65	2	1.6446E-202	9018	20190902_JH_EV_Ubi_2	309.49	241.79	6108100	0	0	0	6108100	0	0	0	0	0			5946	1382	5222	16861	17727	17727				1
YYALCGFGGVLSCGLTHTAVVPLDLVK	Unmodified	2909.482	0.48195724	1120	sp|Q00325-2|MPCP_HUMAN	yes	yes	0	0	0	0	0	1	1	1			1	1	1	1	53.198	53.198	3	1.4807E-20	14269	20190821_JH_EV_Ubi	140.12	118.15	156020000	8144300	31474000	68153000	0	0	3338600	5651600	30151000	9104400			5947	1120	5223	16862;16863;16864;16865;16866;16867;16868	17728;17729;17730;17731;17732;17733;17734;17735;17736;17737	17728				10
YYSSEYHYVGGFYGGCNEALMK	Oxidation (M)	2610.0832	0.083160642	951	sp|P53634|CATC_HUMAN	yes	yes	0	0	0	1	0									1	35.638	35.638	3	8.5493E-16	10034	20190902_JH_WT_Ubi_3	138.05	120.9	1814800	0	0	0	0	0	0	0	0	1814800			5948	951	5224	16869	17738	17738			596	1
YYTSASGDEMVSLKDYCTR	Oxidation (M);GlyGly (K)	2375.0046	0.00457597	455	sp|P07900|HS90A_HUMAN;sp|P07900-2|HS90A_HUMAN	yes	no	0	0	1	1	1						1				30.894	30.894	3	0.014922	7724	20190902_JH_MUT_Ubi_2	58.09	41.775	1478800	0	0	0	0	0	1478800	0	0	0			5949	455	5225	16870	17739	17739		460	260	1
YYVTIIDAPGHR	Unmodified	1403.7197	0.7197494	1096	sp|P68104|EF1A1_HUMAN;sp|P68104-2|EF1A1_HUMAN;sp|Q5VTE0|EF1A3_HUMAN	yes	no	0	0	0	0	0				1						33.278	33.278	3	0.035721	7986	20190902_JH_EV_Ubi_2	51.013	24.34	967340	0	0	0	967340	0	0	0	0	0			5950	1096	5226	16871	17740	17740				1