Raw file	Experiment	Fraction	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV285	WT_Rep1	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		5957	34239	0	38203	30275	0	7928	6262	6093	0	169	16.39	20.13	NaN	2.13	5579	824119	32043	3.89	1052	3.28	125404	28218	26955	22.5	31.83	1559	5.52	+	0.4079	0.60812	0.27585	0.42135	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV286	WT_Rep1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6215	45910	0	50052	41768	0	8284	14952	14540	0	412	29.87	34.81	NaN	4.97	12599	958316	43539	4.54	1195	2.74	169732	39464	38832	23.25	26.33	1750	4.43	+	0.39638	0.58844	0.27024	0.42189	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV287	WT_Rep1	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6087	46121	0	49795	42447	0	7348	16719	16349	0	370	33.58	38.52	NaN	5.04	12969	978421	43848	4.48	1137	2.59	172325	40201	39711	23.33	25.87	1724	4.29	+	0.37806	0.55919	0.24283	0.37758	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV288	WT_Rep2	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		5750	35448	0	39374	31522	0	7852	6927	6726	0	201	17.59	21.34	NaN	2.56	6230	828663	33172	4	1168	3.52	129740	29305	28089	22.59	30.93	1672	5.71	+	0.41539	0.62086	0.28217	0.43122	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV289	WT_Rep2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6795	50654	0	55501	45807	0	9694	16502	16018	0	484	29.73	34.97	NaN	4.99	13703	1039786	48108	4.63	1290	2.68	182257	43310	42499	23.76	26.99	1938	4.47	+	0.40409	0.59761	0.28033	0.43401	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV290	WT_Rep2	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6227	41813	0	45227	38399	0	6828	14257	13964	0	293	31.52	36.37	NaN	4.29	11347	943166	39812	4.22	1069	2.69	163105	36421	35908	22.33	25.14	1543	4.24	+	0.37956	0.56249	0.24128	0.37489	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV291	WT_Rep3	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6878	30918	0	35249	26587	0	8662	4073	3987	0	86	11.55	15	NaN	0.99	3700	842584	28435	3.37	1210	4.26	109770	24275	23126	22.11	32.64	1732	7.13	+	0.39735	0.60165	0.26079	0.40231	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV292	WT_Rep3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6273	45878	0	50872	40884	0	9988	13809	13359	0	450	27.14	32.68	NaN	4.51	11694	937140	43081	4.6	1360	3.16	165090	38336	37558	23.22	26.74	1928	5.03	+	0.40887	0.60681	0.27993	0.43575	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV293	WT_Rep3	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6184	37281	0	40600	33962	0	6638	11262	11040	0	222	27.74	32.51	NaN	3.34	9198	867826	35093	4.04	1136	3.24	143007	31804	31346	22.24	25.37	1575	4.95	+	0.38017	0.5631	0.23033	0.35283	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV294	GPX_Rep1	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		8046	28751	0	34012	23490	0	10522	2076	2019	0	57	6.1	8.6	NaN	0.54	1917	900135	25793	2.87	1386	5.37	100370	20855	19711	20.78	32.42	2011	9.64	+	0.37667	0.5561	0.24128	0.36417	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV295	GPX_Rep1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6130	42407	0	47133	37681	0	9452	9841	9467	0	374	20.88	25.12	NaN	3.96	8601	878950	39334	4.48	1598	4.06	149044	34686	33877	23.27	27.4	2192	6.32	+	0.41304	0.60798	0.27634	0.42536	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV296	GPX_Rep1	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6509	32143	0	35891	28395	0	7496	5417	5283	0	134	15.09	18.61	NaN	1.79	4689	778528	29617	3.8	1325	4.47	110676	25910	25334	23.41	28.5	1771	6.84	+	0.37237	0.54676	0.21735	0.32933	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV297	GPX_Rep2	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		7229	30578	0	35684	25472	0	10212	1545	1483	0	62	4.33	5.82	NaN	0.61	1427	818446	27442	3.35	1506	5.49	99406	22571	21310	22.71	34.49	2199	9.74	+	0.39975	0.56953	0.26092	0.38746	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV298	GPX_Rep2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6451	43294	0	48881	37707	0	11174	7213	6910	0	303	14.76	18.33	NaN	2.71	6325	836640	39674	4.74	1801	4.54	140170	34225	33393	24.42	28.52	2480	7.25	+	0.42471	0.61448	0.28487	0.43551	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV299	GPX_Rep2	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		5970	35416	0	39327	31505	0	7822	6138	6014	0	124	15.61	19.09	NaN	1.59	5145	805024	32634	4.05	1427	4.37	125667	28753	28299	22.88	26.23	1939	6.74	+	0.39999	0.56782	0.23538	0.35375	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV300	GPX_Rep3	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		7402	30581	0	35759	25403	0	10356	2072	2019	0	53	5.79	7.95	NaN	0.51	1885	883667	27594	3.12	1411	5.11	107842	22634	21374	20.99	33.65	2099	9.27	+	0.4383	0.62463	0.28938	0.41778	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV301	GPX_Rep3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6308	43261	0	48421	38101	0	10320	7817	7505	0	312	16.14	19.7	NaN	3.02	6755	868232	40011	4.61	1648	4.12	145604	34902	34071	23.97	28.04	2333	6.68	+	0.42162	0.61151	0.28057	0.42802	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV302	GPX_Rep3	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Acetyl (K)	Carbamidomethyl (C)			False	False	1	3		Standard		6166	35391	0	39309	31473	0	7836	6719	6593	0	126	17.09	20.95	NaN	1.61	5628	837272	32702	3.91	1357	4.15	129858	28861	28368	22.23	25.95	1821	6.31	+	0.39581	0.57572	0.23696	0.356	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV324	WT_Rep1_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6222	42149	0	45473	38825	0	6648	17245	16893	0	352	37.92	43.51	NaN	5.29	13942	869217	40165	4.62	1172	2.92	148534	36821	36061	24.79	28.73	1675	4.55	+	0.36395	0.54403	0.23468	0.36175	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV325	WT_Rep2_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6565	49961	0	53692	46230	0	7462	22241	21786	0	455	41.42	47.13	NaN	6.1	18238	1017897	47864	4.7	1261	2.63	174200	44040	43003	25.28	28.97	1869	4.24	+	0.36732	0.55533	0.24524	0.37997	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV326	WT_Rep3_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6355	48221	0	51667	44775	0	6892	22145	21659	0	486	42.86	48.37	NaN	7.05	18046	988746	46294	4.68	1178	2.54	172569	42748	41833	24.77	28.24	1718	4.02	+	0.36758	0.558	0.24196	0.37939	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV327	GPX_Rep1_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6132	47929	0	51154	44704	0	6450	22185	21798	0	387	43.37	48.76	NaN	6	17781	996554	46058	4.62	1168	2.54	172691	42672	41772	24.71	28.1	1719	4.03	+	0.36408	0.5525	0.24859	0.3908	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV328	GPX_Rep2_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6174	48719	0	52176	45262	0	6914	20668	20287	0	381	39.61	44.82	NaN	5.51	16844	1039856	46886	4.51	1136	2.42	178684	43286	42260	24.22	27.51	1676	3.87	+	0.3702	0.55755	0.25122	0.39088	
180831_C18_017_QHF1_PTM_Rev02_#18_031_PTV329	GPX_Rep3_input	32767	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		6230	47434	0	51057	43811	0	7246	20313	19916	0	397	39.78	45.46	NaN	5.48	16332	1013795	45456	4.48	1217	2.68	173938	41749	40696	24	27.65	1757	4.21	+	0.37166	0.56395	0.2474	0.38534	
Total																			154255	974497	0	1074509	874485	0	200024	278398	271708	0	6690	25.91	31.07	NaN	3.34	48613	21752980					3489683	816047	795386	23.38	28.03	44680	5.48		0.3844	0.57323	0.2537	0.39344