Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Fixed modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi652 NEM_07 AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 18149 39008 0 48919 29097 0 19822 885 857 0 28 1.8 2.9 0 0.14 791 1190363 35494 3 1602 4.5 98850 26290 24093 27 32 2554 9.7 + 0.61164 0.85058 0.36262 0.51597 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi653 NEM_08 AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 18621 37672 0 47709 27635 0 20074 720 706 0 14 1.5 2.6 0 0.07 679 1265656 34437 2.7 1513 4.4 104503 25117 22770 24 30 2289 9.1 + 0.61239 0.86815 0.35179 0.50588 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi662 SS_07 AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 19199 35294 0 44246 26342 0 17904 757 742 0 15 1.7 2.8 0 0.084 709 1143198 32304 2.8 1428 4.4 94516 23797 21575 25 31 2274 9.6 + 0.51147 0.69176 0.2934 0.40856 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi663 SS_08 AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 18367 37878 0 47489 28267 0 19222 909 879 0 30 1.9 3.1 0 0.16 856 1150659 34558 3 1454 4.2 95990 25572 23434 27 33 2384 9.3 + 0.56832 0.83853 0.33815 0.52047 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi654 NEM_09 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 18297 38482 0 48055 28909 0 19146 825 798 0 27 1.7 2.8 0 0.14 744 1234021 35105 2.8 1596 4.5 102856 26157 23790 25 31 2487 9.5 + 0.55494 0.79315 0.33107 0.49153 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi655 NEM_10 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 18225 38878 0 48688 29068 0 19620 721 696 0 25 1.5 2.4 0 0.13 651 1222989 35434 2.9 1561 4.4 101198 26348 23889 26 31 2462 9.3 + 0.56342 0.81204 0.33805 0.50981 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi664 SS_09 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 18075 39323 0 49373 29273 0 20100 731 682 0 49 1.5 2.3 0 0.24 681 1153429 35784 3.1 1501 4.2 98912 26436 24031 27 33 2506 9.5 + 0.54871 0.72341 0.33887 0.46237 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi665 SS_10 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 18225 38889 0 48907 28871 0 20036 1099 1060 0 39 2.2 3.7 0 0.19 980 1185460 35426 3 1487 4.2 99624 26094 23877 26 33 2451 9.4 + 0.54608 0.73779 0.33764 0.46952 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi656 NEM_11 Chymotrypsin+ Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 7 Standard 14683 51092 0 63524 38660 0 24864 4326 4188 0 138 6.8 11 0 0.56 3591 1097353 46621 4.2 1600 3.4 111282 35306 33343 32 37 3067 8.7 + 1.1118 1.3147 0.76692 0.95036 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi657 NEM_12 Chymotrypsin+ Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 7 Standard 15602 47708 0 59067 36349 0 22718 3698 3601 0 97 6.3 9.9 0 0.43 3182 1133662 43830 3.9 1432 3.3 111487 33426 31273 30 35 2674 8 + 0.66431 0.90828 0.44372 0.63395 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi666 SS_11 Chymotrypsin+ Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 7 Standard 14824 50546 0 62561 38531 0 24030 5589 5409 0 180 8.9 14 0 0.75 4621 1070894 46052 4.3 1621 3.5 110365 35070 33016 32 37 3146 9 + 0.78357 1.018 0.53477 0.7289 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi667 SS_12 Chymotrypsin+ Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 7 Standard 15592 47793 0 59608 35978 0 23630 3044 2912 0 132 5.1 8.1 0 0.56 2886 1107212 43451 3.9 1608 3.7 107699 32702 30351 30 36 2957 9 + 1.5432 1.7068 1.0614 1.2283 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi648 NEM_13 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 15478 46383 0 56788 35976 0 20812 6123 5981 0 142 11 17 0 0.68 5253 1048343 42028 4 2021 4.8 99015 32146 31461 32 38 3457 11 + 0.66154 0.94299 0.43743 0.65078 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi649 NEM_14 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 15206 47675 0 57986 37364 0 20622 8359 8140 0 219 14 22 0 1.1 7079 1056852 43359 4.1 1991 4.6 102846 33537 32787 33 37 3445 10 + 0.67041 0.95851 0.44212 0.65774 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi658 SS_13 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 15062 48328 0 58577 38079 0 20498 9530 9267 0 263 16 24 0 1.3 8014 977948 43914 4.5 1967 4.5 99754 34210 33445 34 40 3444 10 + 0.66136 0.9503 0.4403 0.66462 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi659 SS_14 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 2 Standard 14195 51600 0 61905 41295 0 20610 13386 12994 0 392 22 31 0 1.9 11168 993412 47042 4.7 1947 4.1 107940 37469 36638 35 40 3390 9 + 0.70398 1.0047 0.4786 0.72113 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi650 NEM_15 Trypsin/P;AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 21525 28489 0 36467 20511 0 15956 407 396 0 11 1.1 1.9 0 0.069 431 1391289 26057 1.9 1451 5.6 98763 18512 15440 19 25 1812 9.8 + 0.65284 0.88646 0.36913 0.52378 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi651 NEM_16 Trypsin/P;AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 20832 30966 0 39405 22527 0 16878 485 475 0 10 1.2 2.1 0 0.059 510 1365222 28354 2.1 1551 5.5 100085 20348 17308 20 27 1997 9.8 + 0.65437 0.90621 0.3809 0.5459 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi660 SS_15 Trypsin/P;AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 20477 31524 0 39253 23795 0 15458 969 934 0 35 2.5 3.9 0 0.23 1008 1199432 28955 2.4 1374 4.7 90835 21627 18733 24 33 1973 9.1 + 0.59636 0.84697 0.35368 0.52311 201204_C20_024_QHF1_Standard_Rev02_#20_074_JGi661 SS_16 Trypsin/P;AspN Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 20824 30375 0 38337 22413 0 15924 833 792 0 41 2.2 3.5 0 0.26 891 1183400 27818 2.4 1333 4.8 89023 20410 17457 23 32 1822 8.9 + 0.62467 0.86955 0.36451 0.52574 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI623 NEM_01 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 14076 52821 0 65575 40067 0 25508 8864 8285 0 579 14 21 0 2.3 7343 954456 47841 5 1875 3.9 101167 36099 35024 36 40 3620 10 + 1.3129 1.5285 0.87957 1.0491 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI624 NEM_02 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 13802 54572 0 67437 41707 0 25730 4738 4036 0 702 7 9.7 0 2.7 4247 970388 49442 5.1 1732 3.5 109159 37944 36846 35 40 3488 9.2 + 2.3555 2.5556 1.7887 1.9377 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI625 NEM_03 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 14069 53357 0 65924 40790 0 25134 8988 8341 0 647 14 20 0 2.6 7574 971257 48392 5 1740 3.6 107997 37184 36115 34 39 3352 9 + 1.5787 1.7809 1.0718 1.2153 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI626 SS_01 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 13547 55347 0 68029 42665 0 25364 8940 8235 0 705 13 19 0 2.8 7738 967346 50407 5.2 1754 3.5 111774 38981 37701 35 40 3397 8.7 + 1.6987 1.8701 1.1672 1.3182 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI627 SS_02 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 13435 55388 0 68079 42697 0 25382 10736 10045 0 691 16 24 0 2.7 9036 979227 50493 5.2 1633 3.2 116480 39147 37913 34 39 3294 8.4 + 1.4346 1.6107 0.94638 1.0877 201009_C20_021_QHF1_Standard_Rev02_#20_058_JGI628 SS_03 GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 3 Standard 14133 52943 0 65777 40109 0 25668 11172 10488 0 684 17 26 0 2.7 8655 999913 47600 4.8 2096 4.4 108416 36010 34895 33 39 3800 11 + 0.65239 0.88641 0.42718 0.61418 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi623_AspN NEM_04 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 13143 59770 0 71660 47880 0 23780 11186 10601 0 585 16 22 0 2.5 8734 1108185 55948 5 1185 2.1 142969 44945 42397 31 38 2660 5.9 + 0.62576 0.8871 0.41676 0.6252 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi624_AspN NEM_05 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 13502 57391 0 68204 46578 0 21626 10448 10030 0 418 15 22 0 1.9 8352 1120667 53975 4.8 1199 2.2 140867 43717 41264 31 38 2577 5.9 + 0.62077 0.89296 0.4104 0.61935 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi625_AspN NEM_06 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 13154 59487 0 70413 48561 0 21852 12319 11803 0 516 17 24 0 2.4 9584 1086169 56095 5.2 1141 2 142927 45684 43361 32 38 2607 5.7 + 0.72098 0.96816 0.4804 0.67981 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi626_AspN SS_04 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 13261 59146 0 70460 47832 0 22628 10579 10089 0 490 15 21 0 2.2 8250 1071130 55492 5.2 1275 2.3 138828 44759 41940 32 39 2736 6.1 + 0.63169 0.90225 0.42058 0.63001 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi627_AspN SS_05 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 13071 60173 0 71724 48622 0 23102 11439 10917 0 522 16 22 0 2.3 8814 1065071 56547 5.3 1248 2.2 139692 45495 42663 33 39 2784 6.1 + 0.64006 0.90637 0.42898 0.64077 201009_C20_022_QHF1_Standard_Rev02_#20_058_JGi628_AspN SS_06 AspN;GluC_phos Specific False Oxidation (M);Acetyl (Protein N-term);NEM_free_CAA Carbamidomethyl (C) Oxidation (M);Acetyl (Protein N-term) True False 1 4 Standard 14025 56394 0 68622 44166 0 24456 8511 8077 0 434 12 18 0 1.8 6662 1075068 52456 4.9 1353 2.6 129267 41014 38273 32 39 2798 6.8 + 0.60323 0.86847 0.38984 0.58754 Total 514676 1494692 0 1838768 1150614 0 688154 181316 172456 0 8860 9.9 15 0 1.3 46541 35539671 3515086 1051553 987103 30 36 89704 8.5 0.88796 1.1991 0.59792 0.84078