Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Fixed modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP421_s HL_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 16930 51125 0 67569 34681 0 32888 13328 11372 0 1956 20 33 0 5.9 7516 1459131 39026 2.7 4923 13 120404 25523 23953 21 26 5217 20 + 0.80554 1.126 0.50768 0.73714 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP424_s PT_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17649 47988 0 62021 33955 0 28066 13884 12212 0 1672 22 36 0 6 8190 1480135 36749 2.5 5045 14 118686 24950 23926 21 26 5310 21 + 0.80927 1.1272 0.5049 0.73678 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP413_s LL_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 18317 43434 0 56256 30612 0 25644 12143 10679 0 1464 22 35 0 5.7 7879 1361126 34214 2.5 4436 13 106761 23213 22091 22 29 4838 21 + 0.78097 1.0881 0.49118 0.71734 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP419_s HL_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17025 50315 0 65320 35310 0 30010 14218 12313 0 1905 22 35 0 6.3 8311 1415209 38862 2.7 5040 13 117487 26180 24911 22 27 5446 21 + 0.80056 1.1183 0.50038 0.73589 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP414_sfce LL_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 22973 25768 0 34774 16762 0 18012 4987 4239 0 748 14 25 0 4.2 2768 1464125 19224 1.3 2674 14 88377 11961 11210 14 21 2576 22 + 0.77119 1.0839 0.4984 0.74132 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP428_s SL_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17134 48130 0 62134 34126 0 28008 15367 13488 0 1879 25 40 0 6.7 9495 1454868 37107 2.6 5061 14 116847 25108 24146 21 26 5552 22 + 0.79305 1.1176 0.50831 0.74601 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP431_s RFL_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 20266 36886 0 48273 25497 0 22776 10495 9251 0 1244 22 36 0 5.5 5889 1502725 26855 1.8 4197 16 100830 17427 16544 17 24 4283 25 + 0.74289 1.0547 0.46777 0.69288 210104_C20_018_QHF1_Standard_Rev02_#21_002_PAP861 SF_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 21807 29607 0 41757 17457 0 24300 4972 4152 0 820 12 24 0 3.4 2771 1207277 22642 1.9 2534 11 84143 13068 12100 16 22 2387 18 + 0.67143 0.96353 0.41008 0.61759 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP415_s ML_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 15632 54101 0 68531 39671 0 28860 19746 17423 0 2323 29 44 0 8 12784 1216245 44549 3.7 4614 10 119399 31692 30717 27 32 5777 18 + 0.78703 1.1104 0.51301 0.75878 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP416_s ML_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17209 48752 0 63531 33973 0 29558 14314 12416 0 1898 23 37 0 6.4 8646 1374928 37834 2.8 4926 13 115041 25437 24253 22 28 5347 21 + 0.78298 1.0952 0.48957 0.7187 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP433_s RFL_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 18147 46602 0 61737 31467 0 30270 12722 10818 0 1904 21 34 0 6.3 6961 1399238 34522 2.5 4860 14 106626 22242 20997 21 26 4955 22 + 0.78112 1.092 0.48097 0.70574 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP425_s PT_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 15598 52420 0 65906 38934 0 26972 18455 16394 0 2061 28 42 0 7.6 12053 1376085 43068 3.1 4381 10 126098 31019 30140 25 29 5231 17 + 0.80456 1.1321 0.53708 0.80108 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP430_s SL_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17470 49494 0 64666 34322 0 30344 14584 12506 0 2078 23 36 0 6.8 8315 1433930 37595 2.6 5180 14 115963 24936 23750 22 26 5465 22 + 0.81672 1.1445 0.51041 0.75217 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP412_sfce LL_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 20386 35472 0 48714 22230 0 26484 6941 5897 0 1044 14 27 0 3.9 3632 1405123 26707 1.9 3365 13 94358 15949 14964 17 24 3252 20 + 0.77946 1.0958 0.48822 0.72615 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP427_s SL_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 16269 50971 0 65367 36575 0 28792 17055 14910 0 2145 26 41 0 7.4 10387 1404965 40645 2.9 4631 11 122723 28205 27258 23 27 5352 19 + 0.77774 1.098 0.50966 0.75915 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP420_s HL_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 18057 46237 0 60763 31711 0 29052 12413 10728 0 1685 20 34 0 5.8 7043 1443037 35391 2.5 4708 13 113279 23303 22035 21 26 4865 21 + 0.78984 1.1073 0.48118 0.7039 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP434_s RFL_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 18160 46336 0 61242 31430 0 29812 12093 10230 0 1863 20 33 0 6.2 6658 1387695 34578 2.5 4783 14 105937 22307 21084 21 26 4817 22 + 0.77481 1.0921 0.47593 0.70816 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP411_sfce LL_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 23150 24861 0 32348 17374 0 14974 5671 5023 0 648 18 29 0 4.3 3442 1448874 18805 1.3 2690 14 86988 12567 11868 14 23 2798 22 + 0.81413 1.1474 0.54468 0.80585 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP417_s ML_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17472 48369 0 63333 33405 0 29928 13920 11943 0 1977 22 36 0 6.6 8057 1368841 37229 2.7 4851 13 112856 24777 23533 22 28 5114 21 + 0.79304 1.1167 0.48925 0.7208 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP426_s PT_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17704 47333 0 60571 34095 0 26476 15669 13713 0 1956 26 40 0 7.4 9812 1508970 36852 2.4 4997 14 121563 25332 24298 21 26 5504 22 + 0.78569 1.1107 0.49656 0.73324 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP411_s LL_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17311 47169 0 60998 33340 0 27658 12972 11277 0 1695 21 34 0 6.1 8519 1300246 37281 2.9 4758 13 108382 25362 24223 23 30 5289 21 + 0.75991 1.0822 0.48258 0.71848 210104_C20_018_QHF1_Standard_Rev02_#21_002_PAP862 SF_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 22149 27716 0 39401 16031 0 23370 3774 3102 0 672 9.6 19 0 2.9 2245 1213743 22055 1.8 1940 8.8 85811 12938 11933 15 22 1848 14 + 0.63106 0.91202 0.38843 0.59494 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP418_s ML_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 16911 49632 0 64103 35161 0 28942 14944 13017 0 1927 23 37 0 6.7 9408 1353332 38930 2.9 5016 13 115436 26532 25449 23 29 5586 21 + 0.78533 1.1077 0.5017 0.74248 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP432_s RFL_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17405 48938 0 63548 34328 0 29220 14434 12387 0 2047 23 36 0 7 8539 1371630 37458 2.7 5110 14 111291 25169 24066 23 28 5513 22 + 0.76753 1.0826 0.47796 0.70684 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP423_s PT_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 15923 50768 0 64701 36835 0 27866 16138 14200 0 1938 25 39 0 7 10090 1334271 41118 3.1 4382 11 117079 28780 27933 25 29 5205 18 + 0.76766 1.077 0.51383 0.76644 210104_C20_018_QHF1_Standard_Rev02_#21_002_PAP859 SF_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 19653 37430 0 51715 23145 0 28570 7125 6224 0 901 14 27 0 3.2 4166 1240653 28151 2.3 3860 14 92729 16588 15648 18 23 3818 23 + 0.67468 0.972 0.41998 0.6462 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP414_s LL_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 17353 46704 0 60121 33287 0 26834 14074 12394 0 1680 23 37 0 6.3 9243 1322291 37086 2.8 4652 13 110667 25526 24508 23 29 5221 20 + 0.72573 1.0331 0.45778 0.67973 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP413_sfce LL_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 24530 19310 0 25772 12848 0 12924 3403 2967 0 436 13 23 0 3.4 2139 1430278 14693 1 1824 12 80682 9497 8861 12 21 1804 19 + 0.77947 1.1004 0.49392 0.72247 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP422_s HL_4 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 18532 43689 0 57085 30293 0 26792 11684 10161 0 1523 20 34 0 5.7 6907 1519296 33391 2.2 4538 14 116791 22290 21195 19 25 4725 21 + 0.78065 1.1 0.48217 0.7138 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP412_s LL_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 16553 48591 0 62686 34496 0 28190 15453 13588 0 1865 25 39 0 6.6 10087 1224277 39196 3.2 4164 11 109656 27084 26174 25 30 4900 18 + 0.73405 1.0543 0.47232 0.70906 210104_C20_018_QHF1_Standard_Rev02_#21_002_PAP860 SF_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 21673 29775 0 42213 17337 0 24876 4601 3832 0 769 11 22 0 3.1 2593 1233898 23064 1.9 2459 11 87955 13280 12243 15 21 2280 17 + 0.66574 0.94723 0.40146 0.5976 200225_C20_009_QHF1_Standard_Rev02_#20_018_PAP429_s SL_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) Carbamidomethyl (C) True False 1 2 Standard 16944 48466 0 62302 34630 0 27672 15034 13478 0 1556 24 39 0 5.6 9420 1427825 37832 2.6 4721 12 116142 25897 24950 22 27 5324 21 + 0.78448 1.1097 0.50569 0.75219 Total 592292 1382389 0 1809458 955318 0 854140 386613 336334 0 50279 21 35 0 5.9 27790 44084267 3446987 714139 680961 21 27 145599 20 0.77558 1.0941 0.4924 0.72965