Sequence Modifications Mass Mass Fractional Part Protein Groups Proteins Gene Names Protein Names Unique (Groups) Unique (Proteins) Acetyl (N-term) Acetyl (Protein N-term) Oxidation (M) Phospho (STY) Missed cleavages Fraction Average Fraction Std. Dev. Fraction 1 Fraction 2 Fraction 3 Fraction 4 Fraction 5 Fraction 6 Fraction 7 Fraction 8 Fraction 9 Retention time Calibrated retention time Charges PEP MS/MS scan number Raw file Score Delta score Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity 1 Reporter intensity 2 Reporter intensity 3 Reporter intensity 4 Reporter intensity 5 Reporter intensity 6 Reporter intensity count 1 Reporter intensity count 2 Reporter intensity count 3 Reporter intensity count 4 Reporter intensity count 5 Reporter intensity count 6 Intensity Reverse Potential contaminant id Protein group IDs Peptide ID Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs Phospho (STY) site IDs MS/MS Count AAAAAAAGDSDSWDADAFSVEDPVRK Acetyl (Protein N-term) 2634.1834 0.18340327 303 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 1 0 0 1 3 0 1 69.32 69.32 3 7.2338E-22 22825 TMT1-2 81.949 75.983 15.886 14.507 22.854 0 14.109 15.587 15 15 22 0 14 15 1 1 1 0 1 1 5026 0 303 1 0 0 0 1 AAAAAATAAAAASIR Acetyl (Protein N-term) 1298.6943 0.69426293 2273 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 yes yes 0 1 0 0 0 6 0 1 65.354 65.354 2 1.1297E-10 20204 TMT1-5 55.578 33.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2273 3 1 1 1 1 AAAAAEQQQFYLLLGNLLSPDNVVR Acetyl (Protein N-term) 2742.4341 0.43407907 65 O00410 IPO5 Importin-5 yes yes 0 1 0 0 0 7 0 1 111.27 111.27 3 2.9865E-19 34078 TMT1-6 57.278 37.563 1.068 4.1699 0.84489 4.3062 0.82367 2.1085 1 4 1 4 1 2 1 2 1 2 1 1 5037.8 2 65 4 2 2;3 3 2 AAAAEGVLATR Acetyl (Protein N-term) 1070.572 0.57202253 2042 Q6QNY1 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes yes 0 1 0 0 0 2 0 1 54.853 54.853 2 0.00089287 16791 TMT1-1 46.64 21.022 30.634 44.017 43.894 20.616 43.252 53.132 29 44 44 22 44 51 1 1 1 1 1 1 11312 3 2042 6 3 4 4 1 AAAAELSLLEK Acetyl (Protein N-term) 1156.634 0.63395409 168 O43324;O43324-2 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes no 0 1 0 0 0 3.5 0.5 1 1 77.589 77.589 2 3.5411E-07 26006 TMT1-2 71.614 40.384 116.86 114.94 99.697 71.429 128.56 150.9 110 117 102 73 131 145 3 3 3 3 3 3 19091 4 168 7 4;5 5;6;7 5 3 AAAAVVEFQR Acetyl (Protein N-term) 1102.5771 0.57710791 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 1 0 0 0 3 0 1 59.143 59.143 2 1.9699E-29 18898 TMT1-2 133.86 93.594 38.32 27.801 28.203 29.486 28.202 22.647 36 29 29 29 29 22 1 1 1 1 1 1 19607 5 54 8 6 8 8 1 AAADFATHGK Unmodified 987.47739 0.47739386 2256 Q8TDZ2-4;Q8TDZ2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 6 0 1 35.555 35.555 3 0.012049 8399 TMT1-5 62.303 23.34 129.61 222.91 209.03 166.23 204.24 226.56 123 221 213 167 210 218 1 1 1 1 1 1 15810 6 2256 9 7 9 9 1 AAADGDDSLYPIAVLIDELR Acetyl (Protein N-term) 2158.0794 0.079379118 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 1 0 0 0 4 0 1 113.04 113.04 3 6.0189E-05 32383 TMT1-3 55.763 37.167 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 536.24 7 956 10 8 10 10 1 AAAEAAAEAK Unmodified 901.45051 0.45051041 2927 Q9UNF1-2;Q9UNF1 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 0 0 2.5 0.5 1 1 36.253 36.253 2;3 5.9024E-05 9572 TMT1-1 90.15 35.169 108.16 152.98 87.014 111.57 126.72 150.95 102 152 94 109 131 145 1 1 1 1 1 1 10169 8 2927 11 9;10 11;12 11 2 AAAEAAVPR Unmodified 854.46102 0.46101552 2804 Q9NZQ3-3;Q9NZQ3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-2 NCKIPSD NCK-interacting protein with SH3 domain yes no 0 0 0 0 0 3 0 1 32.229 32.229 2 0.002068 8230 TMT1-2 107.01 65.799 99.835 84.143 101.29 78.987 128.47 143.44 94 87 102 80 131 138 1 1 1 1 1 1 14598 9 2804 12 11 13 13 1 AAAEEGHIIPR Unmodified 1162.6095 0.60947067 360 O95551-3;O95551;O95551-2 TDP2 Tyrosyl-DNA phosphodiesterase 2 yes no 0 0 0 0 0 3 0 1 33.909 33.909 3 0.0010731 8922 TMT1-2 85.958 57.945 38.17 51.127 33.681 45.15 49.71 45.486 36 51 36 44 51 44 1 1 1 1 1 1 3040.6 10 360 13 12 14 14 1 AAAEVNQDYGLDPK Unmodified 1489.7049 0.7048872 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 4 0 1 49.547 49.547 3 1.3939E-10 14242 TMT1-3 124.62 104.52 99.318 176.6 109.83 102.82 112.48 120.45 94 174 116 102 116 116 1 1 1 1 1 1 70903 11 553 14 13 15 15 1 AAAFEEQENETVVVK Unmodified 1662.8101 0.81008055 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.75 0.829 1 3 6 2 53.873 53.873 2;3;4 9.1929E-23 16917 TMT1-2 178.71 145.3 4286.5 5336.7 4877.9 4054.2 4693.5 5659.8 4047 5364 4991 4056 4851 5435 24 24 24 24 24 24 932440 12 3010 15 14;15;16;17;18;19;20;21;22;23;24;25 16;17;18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35;36;37;38;39;40;41;42;43 30 28 AAAFEQLQK Unmodified 1004.5291 0.52909508 326 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 0 6.5 0.5 1 1 50.284 50.284 2 0.00029824 13714 TMT1-6 96.331 32.766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 326 16 26;27 44;45 45 2 AAAGAPGVR Unmodified 768.42424 0.42423608 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 5 0 1 26.97 26.97 2 0.0092275 4907 TMT1-4 60.294 44.855 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 2131 17 28 46 46 1 AAAGEDYK Unmodified 823.3712 0.37119746 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 3 0 1 33.748 33.748 3 0.035849 8817 TMT1-2 52.403 10.065 38.109 43.403 50.419 44.146 50.049 36.948 36 44 51 44 51 36 1 1 1 1 1 1 3784.7 15 860 18 29 47 47 1 AAAGELQEDSGLCVLAR Unmodified 1758.857 0.85704752 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 3.33 0.471 2 1 58.121 58.121 2;3 5.7046E-52 18476 TMT1-2 217.09 183.71 131.16 182.07 163.29 130.54 154.6 197.06 124 182 167 131 160 189 3 3 3 3 3 3 60162 16 2376 19 30;31;32 48;49;50 48 3 AAAGGGGGGAAAAGR Acetyl (N-term) 1112.5323 0.53228298 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 1 0 0 0 0 2 0 1 23.81 23.81 2 1.6226E-08 4563 TMT1-1 67.726 56.504 15.936 14.647 14.256 22.788 21.73 6.8419 15 15 15 22 22 7 1 1 1 1 1 1 1206.3 17 2905 20 33 51 51 1 AAAGLGGGDSGDGTAR Unmodified 1331.6066 0.60657014 2456 Q96T51;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 32.372 32.372 2 0.00015085 7961 TMT1-1 82.171 71.341 16.063 6.3649 0 7.3723 14.817 15.567 15 7 0 7 15 15 1 1 0 1 1 1 3039.2 18 2456 21 34;35 52;53 52 2 AAAIGIDLGTTYSCVGVFQHGK Unmodified 2264.126 0.12595216 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 8 0 1 66.113 66.113 3 4.9169E-29 19929 TMT1-7 136.26 120.28 107.75 199.34 115.68 134.34 103.7 120.7 102 196 124 131 109 116 2 2 2 2 2 2 35997 19 618 22 36 54;55 54 2 AAALEFLNR Unmodified 1003.5451 0.5450795 986 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 58.445 58.445 2 0.0074113 16950 TMT1-7 63.419 32.849 177.09 177.25 202.82 119.02 177.37 188.95 167 181 203 123 181 182 2 2 2 2 2 2 23680 20 986 23 37;38 56;57;58 58 3 AAALEQFK Unmodified 876.47052 0.47051757 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 6.67 0.471 1 2 51.577 51.577 2;3 0.0030441 14149 TMT1-6 133.55 75.989 548.23 782.91 791.97 706.39 670.21 921.09 519 783 807 701 702 882 3 3 3 3 3 3 72448 21 1702 24 39;40;41 59;60;61 60 3 AAANEQLTR Unmodified 972.49886 0.49885759 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 0 3 0 1 28.707 28.707 2 0.001957 6809 TMT1-2 109.44 60.683 84.997 116.98 42.605 115.16 76.341 59.65 80 116 51 109 80 58 1 1 1 1 1 1 13446 22 2775 25 42 62 62 1 AAAPAPEEEMDECEQALAAEPK Unmodified 2356.0199 0.019891683 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 2 0 2 59.095 59.095 3;4 0.00046554 18528 TMT1-1 53.359 39.344 30.574 58.961 41.249 59.88 56.105 52.765 29 58 44 58 58 51 2 2 2 2 2 2 13955 23 904 26 43;44 63;64 64 2 AAAPAPVSEAVCR Unmodified 1297.6449 0.6448699 819 P20810-8;P20810-2;P20810;P20810-5;P20810-10;P20810-6;P20810-3;P20810-4;P20810-9;P20810-7 CAST Calpastatin yes no 0 0 0 0 0 4 0 1 40.346 40.346 2 2.352E-07 10459 TMT1-3 97.734 69.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 819 27 45 65 65 1 AAAPDVAPAPGPAPR Unmodified 1356.715 0.71499837 2391 Q96D96-4;Q96D96-3;Q96D96 HVCN1 Voltage-gated hydrogen channel 1 yes no 0 0 0 0 0 4 0 1 39.792 39.792 3 4.0073E-05 10235 TMT1-3 88.163 68.401 76.689 185.43 118.44 70.271 130.74 89.011 73 181 123 73 131 87 1 1 1 1 1 1 9524 25 2391 28 46 66 66 1 AAAQCYIDLIIK Unmodified 1377.7326 0.73262227 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 8 0 1 73.395 73.395 3 0.00013633 22823 TMT1-7 96.103 48.815 85.003 93.253 61.706 58.369 71.624 59.784 80 94 65 58 73 58 1 1 1 1 1 1 11790 26 1286 29 47 67 67 1 AAAQLLQSQAQQSGAQQTK Unmodified 1956.0025 0.0024662011 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 7 0 1 47.918 47.918 3 1.6413E-43 12700 TMT1-6 161.75 144.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27 2757 30 48 68 68 1 AAAQLTYCSLCPPDDLADR Unmodified 2135.9616 0.96158894 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 4.5 0.5 1 1 61.255 61.255 3 6.5927E-11 18671 TMT1-3 103.85 88.259 153.51 171.39 202.86 128.6 132.71 166.77 145 174 203 131 138 160 3 3 3 3 3 3 28308 28 772 31 49;50 69;70;71 69 3 AAATAEEPDPK Unmodified 1098.5193 0.51931826 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 2 0 1 35.571 35.571 3 4.8147E-05 9193 TMT1-1 105.98 82.739 185.57 109.27 98.286 102.95 142.28 135.59 174 116 102 102 145 131 1 1 1 1 1 1 16722 29 2488 32 51 72 72 1 AAATGPSFWLGNETLK Acetyl (Protein N-term) 1703.8519 0.85188578 674 P12955;P12955-3;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 1 0 0 0 6 0 2 80.669 80.669 2;3 4.3945E-10 26197 TMT1-5 102.4 77.18 106.79 144.69 143.17 100.99 104.17 151.6 101 145 145 102 109 145 3 3 3 3 3 3 21164 30 674 33 52;53 73;74;75 75 3 AAATPAKK Unmodified 756.44939 0.4493882 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 8 0 1 28.707 28.707 3 0.037004 5328 TMT1-7 60.76 24.574 92.898 39.843 42.437 51.906 69.554 98.219 87 44 44 51 72 94 1 1 1 1 1 1 2473.2 31 786 34 54 76 76 1 AAAVAAAGAGEPQSPDELLPK Acetyl (Protein N-term) 2004.0164 0.016384931 2738 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 1 0 0 0 3 0 1 71.649 71.649 3 1.0535E-18 23772 TMT1-2 50.425 32.508 37.975 74.329 46.812 83.472 62.606 45.118 36 73 51 80 65 44 1 1 1 1 1 1 18908 32 2738 35 55 77 77 1 AAAVGTANK Unmodified 801.43447 0.43446642 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 0 1 31.996 31.996 2 1.1634E-09 7041 TMT1-5 178.83 114.05 291.24 160.02 327.79 165.73 377.35 151.26 274 174 320 176 373 152 1 1 1 1 1 1 55954 33 776 36 56 78 78 1 AAAVGTANKSTVEGIQASVK Unmodified 1901.0218 0.02180466 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 7 0 1 48.267 48.267 4 1.1752E-23 12851 TMT1-6 136.2 118.29 107.65 151.58 172.88 129.08 201.81 133.89 102 152 174 131 203 131 1 1 1 1 1 1 14510 34 776 37 57 79 79 1 AAAVLPVLDLAQR Unmodified 1335.7874 0.78743503 791 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 0 0 0 8 0 1 70.434 70.434 2 9.0109E-08 21613 TMT1-7 122.96 73.604 61.173 110.44 84.688 80.682 90.957 137.05 58 109 88 80 95 131 2 2 2 2 2 2 12691 35 791 38 58 80;81 80 2 AAAVSAEGK Unmodified 802.41848 0.418482 2620 Q9H1K6 MESDC1 Mesoderm development candidate 1 yes yes 0 0 0 0 0 5 0 1 33.389 33.389 2 0.0033054 7417 TMT1-4 71.692 28.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 2620 39 59 82 82 1 AAAVSALAK Unmodified 800.4756 0.47560295 2838 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 0 8 0 1 45.334 45.334 2 0.0016806 11763 TMT1-7 115.49 53.387 107.55 143.73 197.58 119.5 168.26 240.38 102 145 196 123 174 230 1 1 1 1 1 1 11377 37 2838 40 60 83 83 1 AACEQQAVALTLQEDR Unmodified 1801.8629 0.86286118 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 2.5 0.5 1 1 52.75 52.75 3 2.8121E-18 16258 TMT1-2 146.75 114.59 61.645 56.704 50.915 36.737 35.612 53.35 58 58 52 37 36 51 2 2 2 2 1 2 16296 38 2539 41 61;62 84;85 85 2 AACLPLPGYR Unmodified 1116.575 0.57499942 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 53.59 53.59 2 0.00013853 14853 TMT1-6 135.35 99.839 1329.7 2141.7 1388.6 1304.4 1387.1 2090.3 1257 2119 1462 1293 1452 1998 5 5 5 5 5 5 210960 39 690 42 63;64 86;87;88;89;90 86 5 AADAEAEVASLNR Unmodified 1315.6368 0.63680763 518 P06753 TPM3 Tropomyosin alpha-3 chain yes yes 0 0 0 0 0 2 0 1 43.224 43.224 3 5.5456E-06 12374 TMT1-1 108.59 2.4206 54.22 49.901 42.311 45.57 0 46.904 51 51 44 44 0 44 1 1 1 1 0 1 412670 40 518 43 65 91 91 1 AADAEAEVASLNRR Unmodified 1471.7379 0.73791866 518 P06753 TPM3 Tropomyosin alpha-3 chain yes yes 0 0 0 0 1 3 0 1 38.071 38.071 3 0.00016139 10480 TMT1-2 85.837 1.9685 68.673 133.63 66.956 82.296 61.341 83.53 65 131 73 80 65 80 1 1 1 1 1 1 38658 41 518 44 66 92 92 1 AADALEEQQR Unmodified 1129.5364 0.53636531 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 2 0 1 34.369 34.369 2 0.034277 8764 TMT1-1 68.557 39.396 23.417 21.604 13.457 30.503 20.826 22.858 22 22 15 29 22 22 1 1 1 1 1 1 3842.8 42 1805 45 67 93 93 1 AADAVEDLR Unmodified 958.47197 0.47197413 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 2 0 1 42.637 42.637 2 0.0013406 11939 TMT1-1 120.87 51.241 192.85 237.8 208.67 244.3 238.59 249.03 182 239 217 239 247 240 2 2 2 2 2 2 44503 43 2926 46 68 94;95 94 2 AADCEVEQWDSDEPIPAK Unmodified 2058.8841 0.88405013 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 2 0 1 59.492 59.492 3 0.0025091 18657 TMT1-1 53.278 42.334 23.141 20.836 60.496 20.049 20.793 37.783 22 22 58 22 22 36 1 1 1 1 1 1 7332.9 44 2843 47 69 96 96 1 AADDTWEPFASGK Unmodified 1393.615 0.61500956 446 P02766 TTR Transthyretin yes yes 0 0 0 0 0 5 0 1 59.951 59.951 3 3.0206E-06 17926 TMT1-4 112.43 88.138 238.75 273.94 217.05 196.76 240.77 248.97 225 276 225 196 247 240 2 2 2 2 2 2 33659 45 446 48 70 97;98 98 2 AADEEAFEDNSEEYIR Unmodified 1886.7806 0.78063091 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 2 0 1 53.855 53.855 3 6.752E-12 16414 TMT1-1 125.33 118.38 30.654 51.628 34.066 36.68 33.881 60.861 29 51 36 36 36 58 1 1 1 1 1 1 12759 46 1310 49 71 99 99 1 AADEVAEGK Unmodified 888.41888 0.41887593 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 2 0 1 36.246 36.246 2 0.00016745 9460 TMT1-1 147.51 71.654 130.41 150.67 135.52 91.959 143.85 104.63 123 152 138 94 145 102 1 1 1 1 1 1 14933 47 553 50 72 100 100 1 AADFIDQALAQK Unmodified 1289.6616 0.66156582 1241 P51452;P51452-2 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 0 6 0 1 69.347 69.347 3 0.00052819 21754 TMT1-5 84.289 56.96 171.32 230.45 226.2 227.4 268.08 296.16 162 231 232 225 276 285 1 1 1 1 1 1 47407 48 1241 51 73 101 101 1 AADGSPCNVLLCSVVPSR Unmodified 1900.9135 0.91351654 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 0 6.5 0.5 1 1 62.886 62.886 3 7.1488E-11 18649 TMT1-6 90.654 67.663 46.498 64.938 64.989 27.173 34.575 53.379 44 65 65 29 36 51 1 1 1 1 1 1 18548 49 1969 52 74;75 102;103 103 2 AADIDQEVK Unmodified 987.48729 0.48728985 2116 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 43.034 43.034 2 0.00026503 12470 TMT1-2 142.92 83.123 169.33 263.42 171.67 168.73 189.76 218.45 160 261 181 167 196 210 2 2 2 2 2 2 23123 50 2116 53 76;77 104;105 105 2 AADIEQQAVFAVFDENK Unmodified 1893.9109 0.91085723 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 4.67 0.471 1 2 76.47 76.47 3 3.7868E-19 24407 TMT1-4 137.73 112.93 176.7 183.71 263.63 178.31 202.87 280.97 167 188 262 181 211 269 3 3 3 3 3 3 78128 + 51 666;31 54 78;79;80 106;107;108;109 108 4 AADISESSGADCK Acetyl (N-term) 1351.5562 0.55617405 181 O43583 DENR Density-regulated protein yes yes 1 0 0 0 0 2 0 1 44.604 44.604 2 2.7937E-09 12782 TMT1-1 73.885 43.227 23.372 21.48 21.065 29.921 27.669 37.586 22 22 22 29 29 36 1 1 1 1 1 1 5038 52 181 55 81 110 110 1 AAEALAAEAVASR Acetyl (Protein N-term) 1270.6517 0.65172941 7 A2RTX5-2;A2RTX5 TARSL2 Probable threonine--tRNA ligase 2, cytoplasmic yes no 0 1 0 0 0 2 0 1 66.264 66.264 2 0.001587 21193 TMT1-1 42.629 27.478 23.216 44.789 27.599 21.869 28.295 30.107 22 44 29 22 29 29 1 1 1 1 1 1 3482.7 53 7 56 82 111 111 1 AAEALHGEADSSGVLAAVDATVNK Unmodified 2295.1343 0.13426824 1780 Q14554 PDIA5 Protein disulfide-isomerase A5 yes yes 0 0 0 0 0 5 0 1 63.321 63.321 4 1.52E-06 19176 TMT1-4 66.871 49.382 68.384 116.64 129.87 101.62 112.79 112.98 65 116 131 102 116 109 1 1 1 1 1 1 15999 54 1780 57 83 112 112 1 AAECVHR Unmodified 841.38647 0.38647037 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 2.5 0.5 1 1 19.023 19.023 3 0.0028622 3340 TMT1-1 101.69 82.908 26.585 21.241 22.392 14.516 28.927 21.561 25 22 22 15 29 21 3 3 2 3 3 3 2670.2 55 704 58 84;85 113;114;115 113 3 AAEDDEDDDVDTK Unmodified 1436.5427 0.54269205 507 P06454-2;P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 0 0 2 0 1 37.486 37.486 3 5.7563E-11 9956 TMT1-1 134.56 115.24 99.499 177.11 79.063 88.522 98.732 113.38 94 174 87 87 102 109 1 1 1 1 1 1 14253 56 507 59 86 116 116 1 AAEDDEDDDVDTKK Unmodified 1564.6377 0.63765507 507 P06454-2;P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 0 1 2 0 2 37.154 37.154 3;4 7.4784E-17 9828 TMT1-1 147.39 131.08 831.72 1915 1237.4 1294 1547.7 1723.3 791 1872 1307 1278 1593 1658 2 2 2 2 2 2 97903 57 507 60 87;88 117;118 117 2 AAEDLFVNIR Unmodified 1146.6033 0.60332266 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 0 5 0 1 60.945 60.945 2 0.041872 18266 TMT1-4 65.933 29.722 92.268 115.8 83.869 64.026 107.44 105.67 87 116 87 65 109 102 1 1 1 1 1 1 14924 58 2963 61 89 119 119 1 AAEEAFVNDIDESSPGTEWER Unmodified 2351.019 0.018963706 596 P09496-2;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 0 2 0 2 67.187 67.187 3;4 4.3742E-18 21516 TMT1-1 120.73 107 53.725 94.933 87.348 42.673 72.052 68.3 51 94 88 44 73 66 3 3 3 2 3 3 42424 59 596 62 90;91 120;121;122 120 3 AAEEPVSEVTVGVSVLAER Unmodified 1941.0055 0.0054858935 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 3 0 1 67.035 67.035 3 1.1823E-09 21958 TMT1-2 94.856 80.773 30.607 51.498 42.014 52.749 26.069 53.622 29 51 44 51 29 51 1 1 1 1 1 1 11495 60 1596 63 92 123 123 1 AAEESLR Unmodified 774.38718 0.38718187 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 28.468 28.468 2 0.0073121 6382 TMT1-1 129.39 30.253 77.381 117.2 59.953 66.319 61.269 106.98 73 116 65 65 65 102 1 1 1 1 1 1 9979.6 61 3042 64 93 124 124 1 AAEGGLSSPEFSELCIWLGSQIK Unmodified 2478.2101 0.21007572 1945 Q52LJ0-1;Q52LJ0 FAM98B Protein FAM98B yes no 0 0 0 0 0 7 0 1 88.087 88.087 4 5.9737E-05 28363 TMT1-6 61.511 47.639 15.812 21.857 29.023 21.646 35.635 29.897 15 22 29 22 36 29 1 1 1 1 1 1 2303.3 62 1945 65 94 125 125 1 AAEILYYFALR Unmodified 1328.7129 0.71287311 1901 Q16706 MAN2A1 Alpha-mannosidase 2 yes yes 0 0 0 0 0 9 0 1 82.792 82.792 2 0.0061848 24660 TMT1-8 78.098 40.539 38.365 27.925 20.607 29.806 35.26 29.908 36 29 22 29 36 29 1 1 1 1 1 1 3805.9 63 1901 66 95 126 126 1 AAEINGEVDDDDAGGEWR Unmodified 1917.7977 0.79767796 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 2 0 1 51.296 51.296 3 0.00020237 15405 TMT1-1 67.995 57.937 23.337 28.938 20.622 29.81 35.003 37.377 22 29 22 29 36 36 1 1 1 1 1 1 3387 64 2306 67 96 127 127 1 AAELEPDQLLAWQGLANLYEK Unmodified 2371.206 0.20597662 2037 Q6PGP7 TTC37 Tetratricopeptide repeat protein 37 yes yes 0 0 0 0 0 6 0 1 88.02 88.02 3 7.957E-06 29046 TMT1-5 58.093 45.539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65 2037 68 97 128 128 1 AAELGAR Unmodified 686.37114 0.37113788 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 4 0 1 29.514 29.514 2 0.005325 6189 TMT1-3 81.32 19.826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66 389 69 98 129 129 1 AAELIANSLATAGDGLIELR Unmodified 1997.0793 0.079319539 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 6 0 1 87.284 87.284 3 1.4878E-23 28775 TMT1-5 133.21 102.23 54.057 57.002 63.695 66.052 63.648 68.54 51 58 65 65 66 66 2 2 2 2 2 2 28630 67 1012 70 99 130;131 131 2 AAESLADPTEYENLFPGLK Unmodified 2064.0052 0.0051515425 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 6 0 2 79.484 79.484 3;4 0.00016895 25738 TMT1-5 63.827 47.885 76.923 154.78 105.05 72.085 76.71 106.54 73 152 109 73 80 102 2 2 2 2 2 2 12473 68 1021 71 100;101 132;133 132 2 AAEVLNK Unmodified 743.41775 0.41775372 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 5 0 1 42.027 42.027 2 0.0079842 10865 TMT1-4 121.29 55.489 238.8 453.41 237.6 198.03 282.55 401.28 226 445 254 199 292 384 1 1 1 1 1 1 23325 69 1261 72 102 134 134 1 AAEVPNEELINLLLK Unmodified 1664.9349 0.93488713 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 6 0 1 84.119 84.119 3 1.1547E-05 27543 TMT1-5 92.457 79.32 0 37.428 52.394 12.176 58.299 52.702 0 36 51 15 58 51 0 1 1 1 1 1 2984 70 2064 73 103 135 135 1 AAEWYNIDFSLQNQLR Unmodified 1966.9537 0.95372509 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 7 0 1 74.518 74.518 3 1.5074E-08 23163 TMT1-6 106.19 98.406 30.586 66.549 32.785 45.341 42.372 45.695 29 65 36 44 44 44 1 1 1 1 1 1 14855 71 1666 74 104 136 136 1 AAFDDAIAELDTLSEESYK Unmodified 2086.9583 0.95826093 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 4 0.816 1 1 1 88.906 88.906 3 8.8117E-40 29414 TMT1-3 177.04 145.43 240.39 280.8 296.82 251.09 353.87 263.86 227 283 298 252 358 257 8 7 6 8 8 8 55292 72 1422 75 105;106;107 137;138;139;140;141;142;143;144 140 8 AAFNSGK Unmodified 693.34459 0.34458878 472 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 0 0 0 0 0 6.25 3.11 1 1 1 1 35.732 35.732 2 0.0075008 7960 TMT1-6 127.12 85.815 3295 4754.4 4123.3 3430.5 4680.5 5565.3 3116 4742 4231 3444 4808 5346 7 7 7 7 7 7 633650 73 472 76 108;109;110;111 145;146;147;148;149;150;151 147 7 AAFQLGSPWR Unmodified 1131.5825 0.58252764 483 P05091 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 60.077 60.077 2 0.0022985 15756 TMT1-8 85.807 56.234 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74 483 77 112 152 152 1 AAFSQEK Unmodified 779.38137 0.38136821 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 6 0 1 36.947 36.947 2 0.019116 8954 TMT1-5 98.299 51.733 84.379 139.01 127.76 117.08 111.56 127.93 80 138 131 116 116 123 1 1 1 1 1 1 8131 75 2853 78 113 153 153 1 AAFTECCQAADK Unmodified 1370.5595 0.55948529 28 CON__P02768-1;P02768 ALB Serum albumin yes no 0 0 0 0 0 4.67 0.471 1 2 42.425 42.425 2;3 4.0894E-10 10980 TMT1-4 158.47 120.11 1327.4 1680.1 1452.3 1005 1414.1 1643.9 1253 1686 1483 1023 1450 1580 4 4 4 4 4 4 255860 + 76 28 79 114;115;116 154;155;156;157 156 4 AAFVAYALAFPR Unmodified 1295.7026 0.70264277 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 9 0 1 75.823 75.823 2 1.2113E-08 21924 TMT1-8 136.8 100.21 84.38 146.57 121.13 85.726 114.07 96.949 80 145 124 87 116 94 2 2 2 2 2 2 14794 77 2053 80 117 158;159 158 2 AAFVLPEFAR Unmodified 1119.6077 0.60767975 795 P19623 SRM Spermidine synthase yes yes 0 0 0 0 0 8 0 1 67.259 67.259 2 0.00072271 20357 TMT1-7 108.74 49.393 46.52 81.19 47.424 59.547 54.252 107.18 44 80 51 58 58 102 1 1 1 1 1 1 13192 78 795 81 118 160 160 1 AAGASDVVLYK Unmodified 1092.5815 0.58152458 2740 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 0 0 6 0 1 50.695 50.695 2 2.2104E-05 14443 TMT1-5 118.71 74.265 68.876 79.157 78.902 57.506 63.031 67.491 65 80 80 58 65 65 1 1 1 1 1 1 11880 79 2740 83 119 161 161 1 AAGEVLEPANLLAEEKDEDLLFE Unmodified 2514.2377 0.23773025 3030 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 0 1 3 0 1 84.161 84.161 3 0.0049265 28386 TMT1-2 44.105 36.019 0 4.256 0 7.5245 6.7267 7.2701 0 4 0 7 7 7 0 1 0 1 1 1 1374.7 80 3030 84 120 162 162 1 AAGHPGDPESQQR Unmodified 1348.612 0.61198986 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.22 2.04 1 4 1 1 1 1 20.157 20.157 3 2.5197E-08 3592 TMT1-3 120.03 103.01 85.922 103.54 78.866 72.11 100.26 90.947 81 104 82 72 102 88 8 8 8 8 8 8 43279 81 3010 85 121;122;123;124;125;126;127;128;129 163;164;165;166;167;168;169;170;171;172;173;174 171 12 AAGIDEQENWHEGKENIR Unmodified 2094.9719 0.97189435 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 1 4 0 1 40.149 40.149 4 5.1627E-08 10376 TMT1-3 99.569 98.122 115.57 152.19 104.33 87.315 82.826 121.29 109 152 109 87 87 116 1 1 1 1 1 1 12689 82 932 86 130 175 175 1 AAGKGDVPTK Unmodified 942.51345 0.51344502 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 1 6 0 1 34.168 34.168 3 0.012469 7860 TMT1-5 67.726 43.382 123.32 89.76 116.04 77.668 151.84 104.4 116 94 116 80 152 102 1 1 1 1 1 1 5193.6 83 1438 87 131 176 176 1 AAGPSLSHTSGGTQSK Unmodified 1484.7219 0.72193424 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 0 8 0 1 29.7 29.7 3 9.1094E-07 5719 TMT1-7 97.797 89.198 15.82 29.433 21.302 14.725 21.295 30.306 15 29 22 15 22 29 1 1 1 1 1 1 3318.1 84 913 88 132 177 177 1 AAGQPYEQHAK Unmodified 1198.5731 0.57308516 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 4 0 1 28.139 28.139 3 4.6905E-05 5626 TMT1-3 106.29 72.882 22.996 51.733 58.651 19.879 35.716 29.895 22 51 58 22 36 29 1 1 1 1 1 1 3175.5 85 119 89 133 178 178 1 AAGVEAAAEVAATEIK Acetyl (N-term) 1541.7937 0.7937022 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 1 0 0 0 0 2.5 0.5 1 1 81.548 81.548 2 5.3601E-95 26578 TMT1-1 101.39 78.021 60.254 103.38 64.748 76.391 91.72 112.12 57 102 69 75 94 109 4 4 4 4 4 5 25968 86 1261 90 134;135 179;180;181;182;183 180 5 AAGVNVEPFWPGLFAK Unmodified 1701.8879 0.88787736 494 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 0 0 0 0 0 9 0 1 81.271 81.271 3 5.6255E-17 23979 TMT1-8 128.96 101.86 450.41 473.42 541.79 508.03 619.18 631.53 425 482 550 505 635 609 2 2 2 2 2 2 144660 87 494 91 136 184;185 184 2 AAHIFFTDTCPEPLFSELGR Unmodified 2307.0994 0.099403054 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 7 0 1 71.578 71.578 3 1.0415E-23 22031 TMT1-6 135.89 132.65 69.022 48.261 80.692 58.907 40.979 68.121 65 51 80 59 44 65 1 1 1 1 1 1 57837 88 1878 92 137 186 186 1 AAHLCAEAALR Unmodified 1181.5975 0.59752577 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 5 0 1 35.352 35.352 2 0.0014629 8224 TMT1-4 98.048 66.759 23.258 36.271 27.783 29.22 43.663 29.668 22 36 29 29 44 29 1 1 1 1 1 1 8175.9 89 2943 93 138 187 187 1 AAHLSYGR Acetyl (Protein N-term) 915.45626 0.45626449 2365 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 1 0 0 0 3 0 1 31.033 31.033 2 0.012003 7756 TMT1-2 50.703 40.954 23.055 59.45 42.307 36.312 27.375 37.595 22 58 44 36 29 36 1 1 1 1 1 1 2567.4 90 2365 94 139 188 188 1 AAHSEGNTTAGLDMR Unmodified 1529.6893 0.68925391 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 3 0 1 30.89 30.89 3 2.3626E-20 7689 TMT1-2 166.86 146.01 46.703 50.4 42.751 35.867 49.624 60.412 44 51 44 36 51 58 1 1 1 1 1 1 14073 91 1504 95 140 189 189 1 AAIAQALAGEVSVVPPSR Unmodified 1734.9628 0.96283322 1923 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 67.793 67.793 3 1.6282E-10 20640 TMT1-7 112.3 94.12 68.892 86.756 69.788 81.836 76.811 90.55 65 87 73 80 80 87 2 2 2 2 2 2 8232.9 92 1923 96 141 190;191 191 2 AAIDWFDGK Unmodified 1021.4869 0.48689592 2318;1026 P35637-2;P35637;Q92804-2;Q92804 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 0 6 0 1 66.446 66.446 2 0.0018017 20723 TMT1-5 112.84 34.326 356.33 576.88 397.18 346.65 417.94 524.27 337 571 415 346 432 503 2 2 2 2 2 2 35932 93 1026;2318 97 142 192;193 193 2 AAIDWFDGKEFHGNIIK Unmodified 1959.9843 0.98429694 2318 Q92804-2;Q92804 TAF15 TATA-binding protein-associated factor 2N yes no 0 0 0 0 1 7 0 1 64.55 64.55 4 0.0032786 19293 TMT1-6 54.501 29.447 61.302 103.24 69.158 74.645 54.364 83.729 58 102 73 73 58 80 1 1 1 1 1 1 10040 94 2318 98 143 194 194 1 AAIGLLAR Unmodified 783.49667 0.49667274 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 9 0 1 50.697 50.697 2 0.00024759 12056 TMT1-8 158.16 26.154 613.16 800.36 504.45 547.51 614.35 749.99 578 799 536 539 636 720 1 1 1 1 1 1 79374 95 541 99 144 195 195 1 AAIISAEGDSK Unmodified 1060.5401 0.5400537 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 4.5 0.5 1 1 44.699 44.699 2;3 2.2317E-08 12200 TMT1-3 158.79 118.79 354.24 457.21 308.24 221.39 327.81 392.53 334 457 321 225 336 377 2 2 2 2 2 2 50229 96 1012 100 145;146 196;197 196 2 AAILPTSIFLTNK Unmodified 1387.8075 0.80750177 103 O14744-2;O14744;O14744-3;O14744-5 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 0 9 0 1 74.694 74.694 3 0.00019123 21495 TMT1-8 85.288 61.258 46.561 81.303 40.496 44.881 42.393 45.694 44 80 44 44 44 44 1 1 1 1 1 1 6714.9 97 103 101 147 198 198 1 AAITSYEK Unmodified 881.44945 0.44944778 957 P30273 FCER1G High affinity immunoglobulin epsilon receptor subunit gamma yes yes 0 0 0 0 0 5.5 0.5 1 1 42.306 42.306 2 8.5799E-05 11088 TMT1-5 155.75 115.65 245.52 298.35 320.79 190.19 261.47 325.13 232 301 322 196 269 312 2 2 2 2 2 2 45847 98 957 102 148;149 199;200 200 2 AAIYGGVEGGGTR Acetyl (N-term) 1248.6099 0.6098646 2884 Q9UJ70 NAGK N-acetyl-D-glucosamine kinase yes yes 1 0 0 0 0 2 0 1 50.741 50.741 2 0.00083117 15211 TMT1-1 71.555 31.488 30.849 28.425 20.977 21.688 58.908 52.685 29 29 22 22 59 51 1 1 1 1 1 1 17504 99 2884 103 150 201 201 1 AALAAER Unmodified 700.38679 0.38678794 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 4 0 1 29.519 29.519 2 0.0064222 6191 TMT1-3 79.454 27.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1226 104 151 202 202 1 AALADDFDTPR Unmodified 1190.5568 0.5567664 2667 Q9HA77 CARS2 Probable cysteine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 2 0 1 50.709 50.709 2 5.1688E-06 15196 TMT1-1 97.277 76.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101 2667 105 152 203 203 1 AALADVLR Unmodified 827.4865 0.48650199 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 6 0 1 52.837 52.837 2 0.005857 15255 TMT1-5 113.1 47.015 160.72 274.73 165.95 137.18 200.09 294.9 152 271 175 138 207 282 1 1 1 1 1 1 15059 102 2687 106 153 204 204 1 AALAGGTTMIIDHVVPEPGTSLLAAFDQWR Unmodified 3136.6016 0.6015551 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 8 0 1 88.878 88.878 3 0.00052696 28764 TMT1-7 41.475 34.6 0 0 23.804 0 0 15.99 0 0 22 0 0 15 0 0 1 0 0 1 5395.9 103 1892 107 154 205 205 1 AALAHSEEVTASQVAATK Unmodified 1782.9112 0.91119158 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 45.43 45.43 3 5.5114E-36 12200 TMT1-4 148.52 129.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104 1833 108 155 206 206 1 AALANLCIGDVITAIDGENTSNMTHLEAQNR Unmodified 3311.5874 0.58743796 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6 0.816 1 1 1 80.214 80.214 3;4 1.8823E-27 25054 TMT1-6 115.76 110.23 62.497 56.015 88.683 64.141 86.037 89.221 59 58 88 65 88 86 3 3 3 3 3 3 32533 105 41 109 156;157;158 207;208;209 209 3 AALANLCIGDVITAIDGENTSNMTHLEAQNR Oxidation (M) 3327.5824 0.58235258 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 1 0 0 6 0 1 75.899 75.899 4 9.2411E-09 24375 TMT1-5 68.516 60.873 15.857 21.981 21.391 22.771 0 38.376 15 22 22 22 0 36 1 1 1 1 0 1 8004.9 106 41 109 159 210 210 10 1 AALAPLPPLPAQFK Acetyl (N-term) 1474.8548 0.85478632 2701 Q9NP79 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes yes 1 0 0 0 0 8 0 1 85.496 85.496 3 9.7931E-06 27469 TMT1-7 74.698 53.326 146.33 150.15 166.24 105.72 186.36 188.69 138 153 167 109 189 182 2 2 2 2 2 2 36011 107 2701 110 160 211;212 212 2 AALCHFCIDMLNAK Unmodified 1662.768 0.76803828 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 8 0 1 62.414 62.414 4 0.00080141 18502 TMT1-7 71.555 58.929 30.687 44.164 34.851 29.099 27.707 37.585 29 44 36 29 29 36 1 1 1 1 1 1 3834.9 108 1304 111 161 213 213 1 AALDSLSLFTSLGLSEQK Acetyl (Protein N-term) 1921.0044 0.004423261 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 1 0 0 0 7 0 1 101.89 101.89 3 7.0255E-06 33117 TMT1-6 71.085 50.422 7.3101 22.672 14.546 6.4455 18 15.476 7 22 15 7 18 15 1 1 1 1 1 1 5282.7 109 1146 112 162 214 214 1 AALEACHK Unmodified 898.43309 0.43308621 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 5 0 1 31.307 31.307 3 0.0027774 6549 TMT1-4 94.114 48.397 222.64 219.94 266.3 234.44 231.49 255.63 210 225 269 233 240 246 2 2 2 2 2 2 34443 110 660 113 163 215;216 215 2 AALEALGSCLNNK Unmodified 1359.6816 0.68164933 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 8 0 1 61.158 61.158 2 1.0717E-20 18005 TMT1-7 145.41 100.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111 1006 114 164 217 217 1 AALEAVGGTVVLE Unmodified 1227.6711 0.67106787 1276 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 72.002 72.002 2 7.3902E-06 22932 TMT1-3 114.84 94.512 23.258 36.271 27.776 29.378 35.279 29.907 22 36 29 29 36 29 1 1 1 1 1 1 11868 112 1276 115 165;166 218;219 218 2 AALEEVYPDLTPEETRR Unmodified 1987.9851 0.9850848 2611 Q9H0D6-2;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 1 3 0 1 55.164 55.164 3 8.6682E-10 17325 TMT1-2 110.9 101.32 46.642 34.041 66.886 26.193 80.689 52.064 44 36 65 29 80 51 1 1 1 1 1 1 9326.6 113 2611 116 167 220 220 1 AALEGTATYR Unmodified 1051.5298 0.52982336 2732 Q9NRV9 HEBP1 Heme-binding protein 1 yes yes 0 0 0 0 0 4 0 1 37.865 37.865 2 0.00021756 9494 TMT1-3 128.36 119.54 215.1 291.61 209.92 165.6 235.19 209.69 203 291 218 167 239 203 2 2 2 2 2 2 15358 114 2732 117 168 221;222 222 2 AALEQLLK Unmodified 884.53312 0.53311783 2317 Q92797;Q92797-2 SYMPK Symplekin yes no 0 0 0 0 0 7 0 1 62.627 62.627 2 0.036665 18509 TMT1-6 78.334 19.757 61.495 72.477 62.732 65.976 70.724 75.8 58 73 65 65 73 73 1 1 1 1 1 1 5813.8 115 2317 118 169 223 223 1 AALETDENLLLCAPTGAGK Unmodified 1942.967 0.9669919 293 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 0 5 0 1 67.214 67.214 3 8.7651E-10 20768 TMT1-4 97.32 84.657 38.22 58.821 18.756 29.774 42.831 53.144 36 58 22 29 44 51 1 1 1 1 1 1 9094.1 116 293 119 170 224 224 1 AALGPLVTGLYDVQAFK Unmodified 1761.9665 0.96652161 644 P11172 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 0 0 9 0 1 82.825 82.825 3 5.7328E-20 24630 TMT1-8 132.08 110.21 84.663 117.13 98.605 72.332 84.028 106.33 80 117 101 73 87 102 2 2 2 2 2 2 12284 117 644 120 171 225;226 225 2 AALGYDYK Unmodified 899.43888 0.43888309 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 6 0 1 46.944 46.944 2 0.0057225 12933 TMT1-5 114.93 90.597 187.67 533.7 286.85 277.49 376.3 489.22 179 518 307 276 388 469 1 1 1 1 1 1 28560 118 701 121 172 227 227 1 AALGYDYKGETEK Unmodified 1443.6882 0.6881745 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 1 5.5 0.5 1 1 45.245 45.245 3 1.5457E-05 12234 TMT1-5 89.43 63.564 77.435 86.053 77.361 81.833 52.97 114.68 73 87 80 80 58 109 1 1 1 1 1 1 8471.4 119 701 122 173;174 228;229 229 2 AALLELWELR Unmodified 1212.6867 0.68665836 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 80.433 80.433 2 0.00018291 25496 TMT1-7 130.66 74.093 54.04 80.701 46.366 83.105 83.532 106.35 51 80 51 80 87 102 1 1 1 1 1 1 12253 120 1737 123 175 230 230 1 AALLELWELRR Unmodified 1368.7878 0.78776939 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 9 0 1 67.396 67.396 3 0.0044802 18628 TMT1-8 77.64 32.793 46.772 58.147 24.601 68.521 56.258 36.771 44 58 29 65 58 36 1 1 1 1 1 1 6405.7 121 1737 124 176 231 231 1 AALLNFDEFAVSK Unmodified 1423.7347 0.73473076 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 75.088 75.088 3 6.665E-05 23443 TMT1-6 96.591 69.993 191.92 208.07 209.24 125.88 199.03 219.25 181 211 211 130 203 211 3 3 3 3 3 3 42964 122 3042 125 177;178 232;233;234 233 3 AALLWALAAALER Unmodified 1367.7925 0.79252041 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 9 0 1 96.98 96.98 2 3.1702E-16 29913 TMT1-8 157.78 106.87 42.263 64.31 55.99 36.193 48.415 64.71 40 64 57 37 50 62 2 2 2 2 2 2 13996 123 2157 126 179 235;236 236 2 AALNEIESR Unmodified 1001.5142 0.5141733 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 3 0.816 1 1 1 42.122 42.122 2 0.0010019 12069 TMT1-2 125.71 56.085 575.72 793.71 671.25 605.39 669.59 830.49 544 793 692 602 694 797 5 5 5 5 5 5 122020 124 288 127 180;181;182 237;238;239;240;241 239 5 AALQEEEQASK Unmodified 1202.5779 0.57789577 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 2.33 0.471 2 1 39.004 39.004 2;3 1.0762E-16 10676 TMT1-1 156.58 98.621 54.048 56.979 65.107 34.385 57.534 45.262 51 58 65 36 58 44 1 1 1 1 1 1 9400.4 125 39 128 183;184;185 242;243;244 242 3 AALQELLSK Unmodified 971.56515 0.56514624 1450 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 0 8 0 1 65.312 65.312 2 1.0202E-05 19710 TMT1-7 157.96 88.758 361.59 656.26 528.45 425.6 627.4 593.98 343 648 544 429 638 574 2 2 2 2 2 2 45821 126 1450 129 186 245;246 246 2 AALRPLVKPK Unmodified 1091.7179 0.71789891 1458 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 2 9 0 1 40.339 40.339 4 0.0077928 8215 TMT1-8 76.465 66.343 376.31 375.24 94.542 390.12 401.98 291.27 353 378 126 369 411 284 1 1 1 1 1 1 16875 127 1458 130 187 247 247 1 AALSASEGEEVPQDK Unmodified 1529.7209 0.72093119 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 2 0 1 45.313 45.313 4 0.020259 13074 TMT1-1 44.968 26.83 23.178 44.682 34.138 45.255 42.669 37.158 22 44 36 44 44 36 1 1 1 1 1 1 2535.7 128 373 131 188 248 248 1 AALSEEELER Unmodified 1145.5564 0.55643205 173 O43432-4;O43432;O43432-3 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 0 0 0 0 0 2 0 1 43.366 43.366 2 0.0035577 12310 TMT1-1 95.775 54.893 38.098 66.037 33.169 36.556 43.326 29.678 36 65 36 36 44 29 1 1 1 1 1 1 5859.1 129 173 132 189 249 249 1 AALSSQQQQQLALLLQQFQTLK Unmodified 2484.37 0.37002225 2055 Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 0 0 9 0 1 89.169 89.169 4 0.012933 27122 TMT1-8 36.217 17.852 23.296 33.141 23.951 22.299 17.015 22.966 22 33 25 22 18 22 1 1 1 1 1 1 3773.4 130 2055 133 190 250 250 1 AALTGLLHR Unmodified 950.56615 0.56614929 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 9 0 1 46.493 46.493 3 6.4193E-05 10355 TMT1-8 133.68 52.038 30.694 43.104 34.573 36.778 27.097 45.065 29 43 36 36 29 43 1 1 1 1 1 1 35926 131 1312 134 191 251 251 1 AALTTLFK Acetyl (Protein N-term) 905.52222 0.52221879 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 1 0 0 0 7.5 0.5 1 1 81.751 81.751 2 0.00010842 26018 TMT1-6 79.597 50.024 339.6 421.51 275.12 286.05 365.38 460.75 320 422 291 283 377 442 3 3 3 3 3 3 69901 132 2434 135 192;193 252;253;254 252 3 AALVLEDGSVLR Acetyl (N-term) 1283.7085 0.70851601 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 1 0 0 0 0 3 0 1 78.133 78.133 2 1.1239E-05 26283 TMT1-2 87.258 61.364 7.3593 22.809 6.1684 0 7.0727 7.2602 7 22 7 0 7 7 1 1 1 0 1 1 5604.5 133 917 136 194 255 255 1 AAMEALVVEVTK Unmodified 1259.6795 0.67952407 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 0 6 0 1 71.286 71.286 3 0.0024083 22508 TMT1-5 72.089 21.414 53.859 87.751 70.879 57.709 77.664 97.988 51 87 73 58 80 94 1 1 1 1 1 1 9207.4 134 1619 137 195 256 256 1 AAMEPIVISAK Unmodified 1128.6213 0.62128091 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.8 2.64 1 2 1 1 57.388 57.388 2;3 8.9026E-17 16364 TMT1-6 186.78 164.04 1071.2 1317 1163.8 981.03 1103.1 1441.7 1011 1324 1194 980 1145 1382 5 5 5 5 5 5 575980 135 3010 138 196;197;198;199;200 257;258;259;260;261;262 260 6 AAMEPIVISAK Oxidation (M) 1144.6162 0.61619553 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 7 0 1 49.899 49.899 2 0.00072902 13453 TMT1-6 115.42 70.666 99.601 114.79 114.61 78.748 98.925 120.83 94 116 116 80 102 116 1 1 1 1 1 1 22857 136 3010 138 201 263 263 323 1 AAMIWIVGEYAER Unmodified 1507.7493 0.74933497 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 7.5 0.5 1 1 75.474 75.474 2;3 0.00013205 23716 TMT1-7 80.102 73.569 30.755 28.165 36.892 29.125 19.826 53.8 29 29 37 29 22 51 1 1 1 1 1 1 3304.6 137 1467;1637 139 202;203 264;265 265 2 AAMLAPLLEVIK Unmodified 1267.7574 0.75738046 1761 Q14191 WRN Werner syndrome ATP-dependent helicase yes yes 0 0 0 0 0 6 3.56 1 1 1 43.916 43.916 3;4 0.00192 9252 TMT1-8 67.385 29.704 8689.4 9879 10153 8015.9 10955 13046 8201 9995 10302 8076 11254 12532 5 5 5 5 5 5 502090 138 1761 140 204;205;206 266;267;268;269;270 270 5 AAMPPQIIQFPEDQK Unmodified 1711.8603 0.86034198 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 6 0 1 65.293 65.293 3 8.0472E-05 20207 TMT1-5 82.908 59.076 92.07 131.44 103.92 127.13 117.33 159.75 87 131 109 124 123 153 2 2 2 2 2 2 8957.1 139 1870 141 207 271;272 271 2 AANAITK Unmodified 687.39154 0.39153897 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 6.5 0.5 1 1 35.054 35.054 2 0.010017 8152 TMT1-5 109.86 62.796 314.49 250.22 311.86 253.37 301 308.01 296 260 314 254 309 297 2 2 2 2 2 2 26978 140 2788 142 208;209 273;274 273 2 AANATTNPSQLLPLELVDK Acetyl (N-term) 2036.079 0.078985188 3021 Q9Y4Y9 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes yes 1 0 0 0 0 5 0 1 86.253 86.253 2 4.8099E-10 28193 TMT1-4 47.532 34.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 141 3021 143 210 275 275 1 AANDAGYFNDEMAPIEVK Unmodified 1953.8778 0.87784254 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 4 0 1 65.036 65.036 3 0.00099215 20198 TMT1-3 46.027 28.538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142 1102 144 211 276 276 1 AANFENHSGK Unmodified 1073.489 0.48902118 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.25 1.92 1 2 1 30.249 30.249 3;4 0.00011365 6213 TMT1-4 112.85 88.691 3415.7 4368.7 4173.5 3172.1 3614.4 4849.5 3227 4388 4246 3192 3754 4646 6 6 6 6 6 6 492110 143 776 145 212;213;214;215 277;278;279;280;281;282 279 6 AANFENHSGKLGATAEK Unmodified 1743.854 0.85401105 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 6 0 1 37.822 37.822 4 9.8887E-06 9320 TMT1-5 86.455 67.163 253.84 157.61 304.66 109.53 358.72 129.41 239 169 296 123 352 131 1 1 1 1 1 1 15533 144 776 146 216 283 283 1 AANILVGENLVCK Unmodified 1399.7493 0.74933497 673;549 P12931;P12931-2;P07947 SRC;YES1 Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Yes no no 0 0 0 0 0 7 0 1 62.799 62.799 2 1.4793E-28 18548 TMT1-6 203.03 142.97 138.64 150.16 196.29 136.4 145.18 219.72 131 153 196 138 152 210 1 1 1 1 1 1 51503 145 673;549 147 217 284 284 1 AANILVSASLVCK Unmodified 1344.7435 0.74352131 573 P08631-3;P08631-2;P08631-4;P08631 HCK Tyrosine-protein kinase HCK yes no 0 0 0 0 0 9 0 1 65.041 65.041 3 0.012879 17747 TMT1-8 48.112 5.3683 22.862 82.658 55.038 59.334 41.472 53.183 22 80 58 58 44 51 1 1 1 1 1 1 3820.4 146 573 148 218 285 285 1 AANILVSDTLSCK Unmodified 1390.7126 0.71261511 504 P06239-3;P06239 LCK Tyrosine-protein kinase Lck yes no 0 0 0 0 0 7 0 1 60.072 60.072 3 0.00088227 17495 TMT1-6 76.588 56.125 68.916 71.711 78.623 73.784 70.109 83.279 65 73 80 73 73 80 1 1 1 1 1 1 7146 147 504 149 219 286 286 1 AANSLEAFIFETQDK Unmodified 1682.8152 0.81516593 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 75.805 75.805 2 2.2958E-14 24180 TMT1-4 135.58 111.29 61.632 71.778 40.314 60.089 47.997 75.382 58 72 44 58 51 72 2 2 2 2 2 2 10384 148 3017 150 220;221 287;288 287 2 AANVLLSEHGEVK Unmodified 1365.7252 0.72522871 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 5 0 1 45.046 45.046 3 2.1729E-09 12063 TMT1-4 128.76 108.92 268.19 326.32 274.46 242.73 346.04 381.35 253 328 283 243 354 367 1 1 1 1 1 1 36207 149 3054 151 222 289 289 1 AANVLLSEQGDVK Unmodified 1342.7092 0.70924429 2825 Q9P289;Q9P289-2;Q9P289-3 STK26 Serine/threonine-protein kinase 26 no no 0 0 0 0 0 5 0 1 53.258 53.258 3 2.7254E-08 15278 TMT1-4 119.25 84.05 161.44 210.89 99.541 110.68 134.34 143.27 152 210 109 109 138 138 1 1 1 1 1 1 19101 150 2825 152 223 290 290 1 AAPAPGLISVFSSSQELGAALAQLVAQR Acetyl (Protein N-term) 2793.5025 0.50249299 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 1 0 0 0 9 0 1 116.37 116.37 3 6.3661E-19 35636 TMT1-8 71.052 51.33 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 18231 151 349 153 224 291;292 292 2 AAPASSAGASDAR Unmodified 1130.5316 0.53161428 2222 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 0 3 0 1 23.9 23.9 2 0.0029487 4940 TMT1-2 59.908 34.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 152 2222 154 225 293 293 1 AAPAVQTK Unmodified 784.4443 0.44430282 1312 P55084 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 0 0 0 0 0 6 0 1 33.646 33.646 3 0.025732 7664 TMT1-5 58.604 14.073 46.417 73.348 71.441 65.318 78.084 75.59 44 73 73 65 80 73 1 1 1 1 1 1 3433 153 1312 155 226 294 294 1 AAPCIYWLPLTDSQIVQK Unmodified 2102.087 0.087047453 2897 Q9UKV3-5;Q9UKV3;Q9UKV3-3;Q9UKV3-2 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 9 0 1 79.489 79.489 3 6.1221E-06 23380 TMT1-8 71.594 47.306 30.731 44.288 27.262 29.261 43.111 45.674 29 44 29 29 44 44 1 1 1 1 1 1 5790.5 154 2897 156 227 295 295 1 AAPEASGTPSSDAVSR Unmodified 1501.7009 0.70086445 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 2.75 1.48 1 1 1 1 32.875 32.875 3 6.0077E-29 8445 TMT1-2 186.29 163.17 247.84 312.71 279.83 264.26 346.92 326.96 234 314 288 263 354 316 4 4 4 4 4 4 214760 155 971 157 228;229;230;231 296;297;298;299;300 299 5 AAPEASGTPSSDAVSRLEEEMR Unmodified 2289.0543 0.054303355 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 2.5 0.5 1 1 55.511 55.511 3 1.8166E-28 17096 TMT1-1 130.01 116.42 130.27 182.66 131.81 132.14 169.69 181.71 123 182 138 131 174 175 3 3 3 3 3 3 79403 156 971 158 232;233 301;302;303 301 3 AAPGAEFAPNKR Unmodified 1227.636 0.63601977 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 1 7 0 1 37.543 37.543 3 0.01182 8659 TMT1-6 62.338 39.618 177.57 194.78 107.37 124.84 169.88 185.97 167 196 116 123 174 179 1 1 1 1 1 1 15958 157 1837 159 234 304 304 1 AAPGYHMAK Oxidation (M) 960.44874 0.44873627 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 1 0 0 7 0 1 27.569 27.569 3 0.035286 4786 TMT1-6 63.48 46.848 19.22 5.9712 10.815 14.188 24.974 15.277 18 7 11 14 25 15 1 1 1 1 1 1 575.81 158 648;515 160 235 305 305 79 1 AAPGYHMAK Unmodified 944.45382 0.45382165 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 0 7 0 1 33.641 33.641 3 0.024098 7101 TMT1-6 53.968 33.639 108.28 114.47 99.073 87.037 114.26 89.481 102 116 102 87 116 87 1 1 1 1 1 1 5770.2 159 648;515 160 236 306 306 1 AAPLDSIHSLAAYYIDCIR Unmodified 2148.0674 0.067374644 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 8 0 1 78.758 78.758 3 1.0532E-15 24883 TMT1-7 104.76 83.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 160 1176 161 237 307 307 1 AAPSGGVNCEEFAEFQELLK Acetyl (Protein N-term) 2237.031 0.031048717 1944 Q4VC31 CCDC58 Coiled-coil domain-containing protein 58 yes yes 0 1 0 0 0 4 0 1 88.91 88.91 3 0.00028887 29384 TMT1-3 60.564 56.845 30.842 29.486 21.224 14.72 21.808 15.368 29 30 22 15 22 15 1 1 1 1 1 1 5964.9 161 1944 162 238 308 308 1 AAPSVTLFPPSSEELQANK Unmodified 1985.0106 0.010571271 620 P0DOY3;P0DOY2;P0CF74;A0M8Q6 IGLC6;IGLC7 Ig lambda-6 chain C region;Ig lambda-7 chain C region yes no 0 0 0 0 0 6 0 2 63.989 63.989 3;4 8.8651E-11 19825 TMT1-5 103.67 87.784 245.3 392.89 457.79 290.76 407.55 383.86 233 392 458 298 415 371 5 5 5 5 5 5 23920 162 620 163 239;240 309;310;311;312;313 312 5 AAPVDLELK Acetyl (Protein N-term) 996.54916 0.54916182 247 O60925 PFDN1 Prefoldin subunit 1 yes yes 0 1 0 0 0 2.5 0.5 1 1 67.415 67.415 2 0.00049239 22003 TMT1-2 59.8 26.003 23.173 44.671 34.847 29.37 13.292 30.535 22 44 36 29 15 29 1 1 1 1 1 1 5771.7 163 247 164 241;242 314;315 315 2 AAQAGVAVGDWVLSIDGENAGSLTHIEAQNK Unmodified 3120.5476 0.54760528 2718 Q9NR12;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6 0 1 74.594 74.594 4 3.7132E-35 23826 TMT1-5 124.08 106.57 61.845 25.96 43.412 52.232 49.128 52.964 58 29 44 51 51 51 1 1 1 1 1 1 11157 164 2718 165 243 316 316 1 AAQAPSSFQLLYDLK Unmodified 1650.8617 0.86172219 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 7.5 0.5 1 1 74.006 74.006 3 3.9263E-06 23037 TMT1-7 100.43 66.54 106.83 176.09 110.28 116.99 171.75 142.21 101 174 117 116 174 138 2 2 2 2 2 2 28967 165 657 166 244;245 317;318 318 2 AAQASDLEK Unmodified 931.46108 0.4610751 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 3 0.816 1 1 1 37.675 37.675 2 0.00033149 9258 TMT1-3 140.75 64.899 625.72 1242.9 903.64 680.17 896.6 1125.7 594 1222 935 687 924 1080 4 4 4 4 4 4 169410 166 1053 167 246;247;248 319;320;321;322 321 4 AAQDRDQIYR Unmodified 1234.6054 0.60544792 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 1 3 0 1 26.805 26.805 3 0.0093254 6029 TMT1-2 72.365 54.029 61.316 110.83 60.419 66.281 61.821 90.978 58 109 65 65 65 87 1 1 1 1 1 1 14450 167 1465 168 249 323 323 1 AAQEEYVK Unmodified 936.45526 0.45526144 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 2.5 1.12 1 1 1 1 37.38 37.38 2 0.00078843 10181 TMT1-2 148.05 102.34 1810.8 3209.8 2581.2 2114.1 2967.2 2815.9 1717 3172 2659 2126 3022 2721 8 8 8 8 8 8 373470 168 459 169 250;251;252;253 324;325;326;327;328;329;330;331 327 8 AAQEEYVKR Unmodified 1092.5564 0.55637247 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 4 0 1 31.002 31.002 3 0.00052265 6744 TMT1-3 115.78 69.785 3343.3 5154.4 3421.9 2843.6 3065.1 4806.5 3159 5110 3581 2841 3213 4591 2 2 2 2 2 2 617940 169 459 170 254 332;333 332 2 AAQFVDLLGYFSLK Unmodified 1570.8395 0.83953018 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 92.438 92.438 3 6.6808E-05 28290 TMT1-8 79.652 59.642 30.723 35.63 36.048 13.718 28.121 46.102 29 36 36 15 29 44 1 1 1 1 1 1 4494.4 170 1977 171 255 334 334 1 AAQGEPQVQFK Acetyl (N-term) 1243.6197 0.619701 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 1 0 0 0 0 3.5 0.5 1 1 53.466 53.466 2 1.7681E-05 15652 TMT1-3 114.89 55.649 459.57 642.96 482.77 486.27 568.34 709.73 434 641 504 481 588 681 3 3 3 3 3 3 123080 171 1445 172 256;257 335;336;337 336 3 AAQIPESDQIK Acetyl (Protein N-term) 1240.6299 0.62993134 3027 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 0 1 0 0 0 2 0 1 53.965 53.965 2 0.0011726 16440 TMT1-1 53.089 41.184 38.039 58.319 49.516 44.348 42.161 53.163 36 58 51 44 44 51 1 1 1 1 1 1 7435 172 3027 173 258 338 338 1 AAQLATEIADIK Unmodified 1242.682 0.68196691 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 0 5 0 1 65.879 65.879 3 4.2684E-05 20210 TMT1-4 102.66 59.149 30.539 66.419 40.806 59.774 63.183 60.025 29 65 44 58 65 58 1 1 1 1 1 1 6337.3 173 1825 174 259 339 339 1 AAQLCGAGMAAVVDK Unmodified 1460.7116 0.71156925 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6 0 1 56.604 56.604 2 4.4897E-05 16758 TMT1-5 95.428 64.878 46.592 73.833 41.684 28.263 50.486 45.463 44 73 44 29 51 44 1 1 1 1 1 1 7594.2 174 787 175 260 340 340 1 AAQLCGAGVAAVVEK Unmodified 1442.7551 0.75514863 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 6 0 1 55.866 55.866 3 0.0094375 16459 TMT1-5 52.522 41.261 76.772 170.55 117.23 117.57 118.58 136.26 73 167 123 116 123 131 1 1 1 1 1 1 10205 175 1275 176 261 341 341 1 AAQLGFK Unmodified 733.41227 0.41227441 600 P09622;P09622-3 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 47.264 47.264 2 0.010517 12485 TMT1-7 107.74 45.747 309.92 547.79 287.55 350.32 337.36 611.85 293 539 312 342 358 583 1 1 1 1 1 1 48577 176 600 177 262 342 342 1 AAQLQLPQLPLAALQALGEAASCQLLAR Unmodified 2914.6062 0.60624655 867 P23610 F8A1 Factor VIII intron 22 protein yes yes 0 0 0 0 0 9 0 1 103.36 103.36 4 2.9477E-13 32243 TMT1-8 73.655 63.306 4.209 7.0305 7.9962 4.8651 6.5558 15.803 4 7 8 5 7 15 1 1 1 1 1 1 3510.2 177 867 178 263 343 343 1 AAQSANISVR Unmodified 1015.5411 0.54105675 1032 P35914 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 0 0 0 0 0 5 0 1 32.417 32.417 2 0.0008675 7027 TMT1-4 104.39 62.946 46.275 72.953 95.653 32.44 64.183 67.459 44 73 94 36 65 65 1 1 1 1 1 1 9705.5 178 1032 179 264 344 344 1 AAQSLLNK Unmodified 843.48142 0.48141661 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 7.5 0.5 1 1 46.176 46.176 2 0.00070713 11941 TMT1-7 114.5 51.783 77.329 109.5 75.292 96.7 82.65 113.84 73 109 80 94 87 109 1 1 1 1 1 1 5675.9 179 2752 180 265;266 345;346 346 2 AAQTTIETAIHSLIETLK Unmodified 1939.0626 0.062606842 332 O94915;O94915-2 FRYL Protein furry homolog-like yes no 0 0 0 0 0 8 0 1 88.721 88.721 4 0.00074974 28614 TMT1-7 60.062 37.587 14.826 22.172 14.15 15.147 21.532 22.838 14 22 15 15 22 22 1 1 1 1 1 1 1831.3 180 332 181 267 347 347 1 AASAFFTYVSLSQEGR Unmodified 1732.842 0.84204938 42 O00154-4;O00154-6;O00154-5;O00154-7;O00154 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 0 9 0 1 71.622 71.622 3 5.0096E-06 20315 TMT1-8 80.411 61.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181 42 182 268 348 348 1 AASAGQEPLHNEELAGAGR Unmodified 1876.9028 0.90275216 2416 Q96HY6;Q96HY6-2 DDRGK1 DDRGK domain-containing protein 1 yes no 0 0 0 0 0 2 0 1 36.864 36.864 3 1.9857E-07 9723 TMT1-1 69.747 58.468 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 182 2416 183 269 349 349 1 AASAHAIGTVK Unmodified 1024.5665 0.56654322 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 8 1 1 1 33.201 33.201 3 0.0004134 6847 TMT1-6 94.465 64.992 153.81 179.76 146.69 139.46 139.84 158.04 145 181 152 138 145 152 2 2 2 2 2 2 25278 183 974 184 270;271 350;351 350 2 AASAYAVGDVK Unmodified 1050.5346 0.53457439 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 5 0 1 44.689 44.689 3 0.00014315 11896 TMT1-4 101.93 57.482 76.889 163.32 103.57 93.895 142.19 150.51 73 160 109 94 145 145 1 1 1 1 1 1 17046 184 695 185 272 352 352 1 AASDELSK Unmodified 819.39741 0.39741221 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 2.33 1.25 1 1 1 37.017 37.017 2 3.8937E-07 9897 TMT1-1 137.9 50.288 2421.6 2782.5 2891.9 2008.2 2554.2 2648.6 2286 2814 2921 2039 2617 2553 3 3 3 3 3 3 395130 185 776 187 273;274;275 353;354;355;356 354 4 AASDIAMTELPPTHPIR Unmodified 1818.9298 0.92981853 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 5 0 2 51.09 51.09 3;4 2.6357E-07 14561 TMT1-4 92.703 88.983 321.49 442.74 414.66 308.83 397.32 414 304 443 422 312 407 399 4 4 4 4 4 4 26408 186 1422 188 276;277 357;358;359;360 360 4 AASGEAKPK Unmodified 857.46068 0.46068117 630;745;743 P10412;P16401;P16403 HIST1H1E;HIST1H1B;HIST1H1C Histone H1.4;Histone H1.5;Histone H1.2 no no 0 0 0 0 1 6 0 1 27.82 27.82 3 0.031706 5402 TMT1-5 59.426 36.686 738.99 255.63 376.31 378.76 694.48 134.75 692 293 381 379 685 145 1 1 1 1 1 1 26292 187 630;743;745 189 278 361 361 1 AASIFGGAKPVDTAAR Unmodified 1530.8154 0.8154407 866 P23588-2;P23588 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 1 9 0 1 48.505 48.505 3 0.021213 11194 TMT1-8 51.317 16.633 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188 866 190 279 362 362 1 AASQPPNSSEAGR Unmodified 1270.5902 0.59019179 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 0 2.5 0.5 1 1 24.024 24.024 3 0.00038043 4908 TMT1-2 81.565 54.596 30.722 36.706 35.323 52.847 42.063 44.638 29 37 37 51 44 43 2 2 2 2 2 2 5355.4 189 2872 191 280;281 363;364 364 2 AASSAAQGAFQGN Unmodified 1178.5316 0.53161428 127 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 0 0 0 0 0 4 0 1 40.435 40.435 2 3.6974E-10 10480 TMT1-3 131.82 117.3 54.097 57.115 56.765 51.445 48.651 67.902 51 58 58 51 51 65 1 1 1 1 1 1 16190 190 127 192 282 365 365 1 AATAAADFTAK Unmodified 1036.5189 0.51892433 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 6 0 1 46.042 46.042 2 1.0313E-08 12572 TMT1-5 163.38 125.65 153.47 282.43 116.72 163.89 214.3 180.43 145 277 131 160 218 175 1 1 1 1 1 1 19040 191 3000 193 283 366 366 1 AATALKDVVK Unmodified 1014.6073 0.6073454 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 8 0 1 47.732 47.732 3 0.0043183 12663 TMT1-7 80.763 46.385 404.82 456.32 284.43 289.94 187.03 531.93 381 459 302 284 209 504 1 1 1 1 1 1 33418 192 1827 194 284 367 367 1 AATAPLLEAVDNLSAFASNPEFSSIPAQISPEGR Unmodified 3469.7365 0.73652826 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.33 2 1 2 4 2 96.839 96.839 3;4;5 8.3114E-51 32229 TMT1-5 138.16 129.4 468.89 527.94 473.6 402.89 516.52 497.1 442 532 485 402 526 480 19 17 19 18 18 20 1053200 193 3010 195 285;286;287;288;289;290;291;292;293 368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389 371 22 AATASAGAGGIDGKPR Acetyl (Protein N-term) 1440.7321 0.732105 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 1 0 0 1 4 0 1 38.225 38.225 2 1.6781E-35 9601 TMT1-3 119.55 105.61 23.179 44.688 33.814 52.518 64.323 36.541 22 44 36 51 65 36 1 1 1 1 1 1 11025 194 1575 196 294 390 390 1 AATFFGCIGIDK Unmodified 1298.6329 0.63290823 1318 P55263-3;P55263-4;P55263-2;P55263 ADK Adenosine kinase yes no 0 0 0 0 0 8.5 0.5 1 1 69.507 69.507 2 4.2375E-08 21329 TMT1-7 132.17 102.36 70.098 87.051 47.307 51.596 70.595 68.342 66 87 51 51 72 66 2 2 2 2 2 2 11186 195 1318 197 295;296 391;392 391 2 AATFFGEVVK Acetyl (Protein N-term) 1109.5757 0.57571092 355 O95456-2;O95456 PSMG1 Proteasome assembly chaperone 1 yes no 0 1 0 0 0 5 0 1 79.356 79.356 2 5.4887E-05 25515 TMT1-4 48.794 22.718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196 355 198 297 393 393 1 AATFGLILDDVSLTHLTFGK Unmodified 2118.1361 0.13610614 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 9 0 2 85.317 85.317 3;4 4.3752E-15 25601 TMT1-8 99.413 84.49 139.15 87.902 163.37 60.367 108.16 89.656 131 94 159 66 109 87 3 3 3 3 3 3 12383 197 1012 199 298;299 394;395;396 395 3 AATGEEVPR Unmodified 928.46141 0.46140945 140 O15294-4;O15294-2;O15294-3;O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 0 2 0 1 29.772 29.772 2 0.007246 6917 TMT1-1 93.267 64.097 15.747 45.42 20.005 22.317 28.531 22.638 15 44 22 22 29 22 1 1 1 1 1 1 2301.3 198 140 200 300 397 397 1 AATGEEVSAEDLGGADLHCR Unmodified 2056.912 0.91199621 2689 Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 2 0 1 45.306 45.306 3 7.8514E-07 13066 TMT1-1 69.122 66.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199 2689 201 301 398 398 1 AATITATSPGALWGLDR Unmodified 1699.8893 0.88933392 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 8 0 1 66.748 66.748 3 3.1173E-08 20195 TMT1-7 103.04 83.326 54.095 57.11 57.101 43.895 42.182 53.162 51 58 58 44 44 51 1 1 1 1 1 1 23314 200 974 202 302 399 399 1 AATIVATSEGSLWGLDR Unmodified 1745.8948 0.89481323 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 6 0 1 68.625 68.625 3 0.00075823 21553 TMT1-5 65.105 47.009 54.303 42.578 34.499 36.477 43.329 29.678 51 44 36 36 44 29 1 1 1 1 1 1 21257 201 695 203 303 400 400 1 AATLAQELEK Unmodified 1072.5764 0.57643921 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 4 0 1 49.044 49.044 2 0.028163 13863 TMT1-3 71.692 18.906 115.58 113.36 136.01 132.87 117.36 151.22 109 116 138 131 123 145 1 1 1 1 1 1 21987 202 1790 204 304 401 401 1 AATQCLSCR Unmodified 1065.4695 0.46954807 933 P29122-2;P29122-8;P29122;P29122-7 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 5 0 1 30.071 30.071 2 0.034442 6131 TMT1-4 72.23 63.457 7.2622 14.984 29.119 29.717 12.983 39.072 7 15 29 29 15 37 1 1 1 1 1 1 1315.8 203 933 205 305 402 402 1 AATTGSGVK Acetyl (N-term) 832.42905 0.42904669 1697 Q13404-8;Q13404 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 1 0 0 0 0 3 0 1 34.517 34.517 2 0.0099427 9084 TMT1-2 78.334 35.736 92.048 154.04 88.412 80.582 84.454 82.87 87 152 94 80 87 80 1 1 1 1 1 1 45419 204 1697 206 306 403 403 1 AAVAAGCR Unmodified 774.38066 0.38065671 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 5 0 1 24.634 24.634 2 0.0044646 4129 TMT1-4 124.86 91.892 16.974 17.712 17.655 15.107 12.514 11.369 16 18 18 15 13 11 1 1 1 1 1 1 1460 205 932 207 307 404 404 1 AAVAATAAAK Unmodified 843.48142 0.48141661 2054 Q6Y1H2 HACD2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 yes yes 0 0 0 0 0 7 0 1 37.292 37.292 2 0.0013898 8502 TMT1-6 74.301 54.665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206 2054 208 308 405 405 1 AAVAGEDGR Unmodified 844.40389 0.40389457 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 0 2 0.816 1 1 1 24.994 24.994 2 0.0019608 5104 TMT1-1 109.36 60.299 195.49 167.8 184.57 150.55 243.88 159.34 184 173 187 152 245 156 4 4 4 4 4 4 25008 207 547 209 309;310;311 406;407;408;409 407 4 AAVATFLQSVQVPEFTPK Unmodified 1932.0357 0.03566381 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 9 0 2 81.346 81.346 2;4 4.0614E-19 24067 TMT1-8 128.54 106.8 352.65 480.66 375.7 327.28 469.46 512.14 333 480 389 328 480 493 3 3 3 3 3 3 66453 208 845 210 312;313 410;411;412 410 3 AAVAWEAGKPLSIEEIEVAPPK Unmodified 2304.2365 0.23654846 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 1 6 0 1 68.739 68.739 4 6.6373E-06 21481 TMT1-5 66.636 54.44 92.307 139.65 57.175 96.76 136.85 88.837 87 138 65 94 138 87 1 1 1 1 1 1 29133 209 660 211 314 413 413 1 AAVDSFYLLYR Acetyl (Protein N-term) 1358.6871 0.68705229 1930 Q3SXM5;Q3SXM5-2 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 0 1 0 0 0 5 0 1 83.616 83.616 2 0.001456 27125 TMT1-4 70.256 44.317 0 53.659 36.18 14.239 0 23.452 0 51 37 15 0 22 0 1 1 1 0 1 3570 210 1930 212 315 414 414 1 AAVDTYCR Unmodified 954.42292 0.42291545 467;802 Q29974;P04229;Q30167;Q30154;P13760;P20039;Q95IE3;Q5Y7A7;P01911 HLA-DRB1;HLA-DRB5 HLA class II histocompatibility antigen, DRB1-16 beta chain;HLA class II histocompatibility antigen, DRB1-1 beta chain;HLA class II histocompatibility antigen, DRB1-10 beta chain;HLA class II histocompatibility antigen, DR beta 5 chain;HLA class II histocompatibility antigen, DRB1-4 beta chain;HLA class II histocompatibility antigen, DRB1-11 beta chain;HLA class II histocompatibility antigen, DRB1-12 beta chain;HLA class II histocompatibility antigen, DRB1-13 beta chain;HLA class II histocompatibility antigen, DRB1-15 beta chain no no 0 0 0 0 0 3 0 1 32.658 32.658 2 0.0018741 8370 TMT1-2 139.68 92.612 84.27 185.11 106.98 157.14 139.28 150.6 80 181 116 152 145 145 1 1 1 1 1 1 20325 211 467;802 213 316 415 415 1 AAVDYQK Unmodified 793.39702 0.39701828 973 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 0 5 0 1 37.243 37.243 2 0.029747 8948 TMT1-4 90.777 54.581 99.092 137.12 181.29 130.72 87.902 128.61 94 138 181 131 94 123 1 1 1 1 1 1 10662 212 973 214 317 416 416 1 AAVEEGIVLGGGCALLR Unmodified 1683.8978 0.89779012 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 67.356 67.356 2;3 6.3677E-35 20970 TMT1-5 185.3 123.9 131.74 128.62 112.28 133.16 177.25 203.88 124 131 117 131 182 196 3 3 3 3 3 3 76536 213 638 215 318;319 417;418;419 419 3 AAVELEEPEDAR Unmodified 1327.6256 0.62557424 331 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 0 2 0 1 44.768 44.768 2 0.00083121 12833 TMT1-1 94.363 70.987 46.758 58.107 27.021 14.256 28.096 46.102 44 58 29 15 29 44 1 1 1 1 1 1 3636.9 214 331 216 320 420 420 1 AAVENHVR Unmodified 894.46716 0.46716353 1173 P49247 RPIA Ribose-5-phosphate isomerase yes yes 0 0 0 0 0 2.5 0.5 1 1 21.597 21.597 3 0.00026859 3899 TMT1-1 106.36 85.801 30.684 35.522 42.636 36.012 42.288 60.621 29 36 43 36 44 58 1 1 1 1 1 1 4933.6 215 1173 217 321;322 421;422 421 2 AAVENLPTFLVELSR Unmodified 1657.9039 0.90392136 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 0 7 0 2 82.169 82.169 2;3 3.0606E-16 26175 TMT1-6 141.75 99.707 137.9 166.29 125.85 117.07 118.07 182.11 130 167 131 116 124 174 2 2 2 2 2 2 101110 216 1803 218 323;324 423;424 424 2 AAVESLGFILFR Unmodified 1321.7394 0.73942221 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 9 0 2 81.667 81.667 2;3 0.0001645 24173 TMT1-8 91.313 69.32 85.143 63.422 63.451 59.369 71.028 75.791 80 66 65 59 73 73 2 2 2 2 2 2 27050 217 2465 219 325;326 425;426 425 2 AAVEWFDGK Unmodified 1021.4869 0.48689592 1560 Q01844-2;Q01844-6;Q01844-3;Q01844;Q01844-5 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 0 6 0 1 60.869 60.869 2 0.001252 18418 TMT1-5 122.13 22.333 122.84 206.05 99.405 124.61 207.51 187.02 116 203 109 123 210 181 1 1 1 1 1 1 17121 218 1560 220 327 427 427 1 AAVEWFDGKDFQGSK Unmodified 1683.7893 0.78928553 1560 Q01844-2;Q01844-6;Q01844-3;Q01844;Q01844-5 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 1 7 0 1 60.742 60.742 3 7.084E-08 17819 TMT1-6 113.59 86.251 91.735 193.11 107.88 125.24 147.45 168.48 87 189 116 123 152 162 1 1 1 1 1 1 24608 219 1560 221 328 428 428 1 AAVHLEGK Unmodified 823.4552 0.45520186 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 2.16 1 1 1 34.99 34.99 3 0.0048932 8236 TMT1-5 85.212 49.718 9035.2 11945 10704 8061.3 10285 12380 8536 11967 10929 8136 10593 11889 5 5 5 5 5 5 1242600 220 776 222 329;330;331 429;430;431;432;433 433 5 AAVHYDR Unmodified 830.4035 0.40350064 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 0 3 0 1 23.055 23.055 3 0.0028741 4631 TMT1-2 101.64 39.644 77.274 109.35 84.719 55.317 160.99 111.6 73 109 87 58 160 109 1 1 1 1 1 1 20768 221 2113 223 332 434 434 1 AAVLEAMTAFR Unmodified 1178.6118 0.61177885 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 9 0 1 69.06 69.06 2 0.0017322 19259 TMT1-8 88.392 58.919 85.156 71.015 54.746 74.514 106.96 105.68 80 73 58 73 109 102 1 1 1 1 1 1 21476 222 688 224 333 435 435 1 AAVLQQVLER Acetyl (Protein N-term) 1167.6612 0.66117189 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 1 0 0 0 4 0 1 81.608 81.608 2 3.0994E-05 26721 TMT1-3 103.55 55.373 14.944 15.459 0 7.5245 6.7267 14.732 14 15 0 7 7 14 2 1 0 1 1 2 6359.8 223 668 225 334 436;437 437 2 AAVLVQQWVSYADTELIPAACGATLPALGLR Unmodified 3253.7169 0.71691921 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 102.71 102.71 4 1.7975E-10 32024 TMT1-8 66.36 52.629 0 23.408 0 0 7.322 0 0 22 0 0 7 0 0 1 0 0 1 0 3712.4 224 903 226 335 438 438 1 AAVPDAVGK Unmodified 826.45487 0.45486751 481 P05023-3;P05023-4;P05023;P05023-2;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 5 0 1 42.202 42.202 2 0.00079397 10920 TMT1-4 128.69 69.705 84.503 131.8 112.99 93.909 111.57 158.85 80 131 116 94 116 152 1 1 1 1 1 1 11347 225 481 227 336 439 439 1 AAVPELLQQQEEDR Acetyl (Protein N-term) 1666.8162 0.81622856 3038 Q9Y5X3;Q9Y5X3-2 SNX5 Sorting nexin-5 yes no 0 1 0 0 0 2 0 1 67.664 67.664 2 5.3337E-19 21692 TMT1-1 124.67 102.58 0 15.849 6.6231 0 6.7795 15.797 0 15 7 0 7 15 0 1 1 0 1 1 9286.6 226 3038 228 337 440 440 1 AAVPSGASTGIYEALELR Unmodified 1803.9367 0.93667805 514;581 P06733;P09104;P09104-2;P13929-3;P13929-2;P13929 ENO1;ENO2;ENO3 Alpha-enolase;Gamma-enolase;Beta-enolase no no 0 0 0 0 0 5 2.1 1 1 2 1 67.061 67.061 2;3 5.0509E-36 20759 TMT1-4 185.02 159.87 434.81 836.92 691.43 547.42 607.72 729.92 413 825 710 549 629 701 6 6 6 6 6 6 668590 227 514;581 229 338;339;340;341;342 441;442;443;444;445;446;447;448;449 443 9 AAVPSIK Unmodified 684.41703 0.41702544 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 7.5 0.5 1 1 44.013 44.013 2 0.010591 11212 TMT1-6 107.43 87.952 2713 4058.6 2967.9 2776.5 3539.4 3998.8 2564 4033 3095 2763 3637 3846 2 2 2 2 2 2 328640 228 397 230 343;344 450;451 450 2 AAVQVLDDIEK Unmodified 1199.6398 0.63976774 838 P22033 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 0 0 0 0 0 4 0 1 62.552 62.552 2 0.0053575 19270 TMT1-3 86.313 48.837 30.699 51.751 26.471 36.971 42.5 53.153 29 51 29 36 44 51 1 1 1 1 1 1 8943.7 229 838 231 345 452 452 1 AAVTEAVR Unmodified 815.45012 0.45011648 2702 Q9NP81;Q9NP81-2 SARS2 Serine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 4 0 1 32.473 32.473 2 0.0080093 7330 TMT1-3 68.915 29.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 230 2702 232 346 453 453 1 AAVVENVVK Acetyl (Protein N-term) 969.5495 0.54949617 2316 Q92785-2;Q92785 DPF2 Zinc finger protein ubi-d4 yes no 0 1 0 0 0 3 0 1 64.323 64.323 2 0.00029096 20847 TMT1-2 63.565 22.992 45.799 34.752 27.747 29.523 27.687 37.586 43 36 29 29 29 36 1 1 1 1 1 1 6910.9 231 2316 233 347 454 454 1 AAVVESHK Unmodified 839.45012 0.45011648 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 5 0 1 29.809 29.809 3 0.00092959 6038 TMT1-4 122.52 53.341 567.24 746.04 692.8 672.66 859.7 535.12 536 748 712 668 869 525 1 1 1 1 1 1 57134 232 389 234 348 455 455 1 AAWEAGK Unmodified 731.36024 0.36023884 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 6 0 1 41.086 41.086 2 0.0053389 10614 TMT1-5 81.297 38.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233 878 235 349 456 456 1 AAWEHMK Unmodified 871.40106 0.4010578 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 6 0 1 39.02 39.02 3 0.0079117 9797 TMT1-5 85.849 67.069 92.106 131.54 97.779 94.925 105.77 113.18 87 131 102 94 109 109 1 1 1 1 1 1 6471.5 234 1250 236 350 457 457 1 AAYFGVYDTAK Unmodified 1204.5764 0.57643921 665 P12236;P12235 SLC25A6;SLC25A4 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 yes no 0 0 0 0 0 7 0 1 56.7 56.7 3 0.0015499 16137 TMT1-6 81.017 54.344 122.64 197.93 140.31 91.72 141.37 177.19 116 196 145 94 145 170 1 1 1 1 1 1 20441 235 665 237 351 458 458 1 AAYIYFTDFCPDNLFNK Unmodified 2097.9506 0.95061355 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 8 0 1 85.566 85.566 3 1.9157E-07 27458 TMT1-7 70.134 60.176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236 48 238 352 459 459 1 AAYLLGCSLEELSSAIFK Unmodified 1971.0023 0.002314771 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 9 0 1 100.79 100.79 3 6.3153E-09 31345 TMT1-8 90.348 61.372 23.405 14.017 21.849 22.35 20.944 30.316 22 15 22 22 22 29 1 1 1 1 1 1 3925.7 237 2306 239 353 460 460 1 AAYLQETGKPLDETLK Unmodified 1775.9305 0.93053004 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 5 0 1 55.129 55.129 3 0.02344 16048 TMT1-4 49.354 30.758 61.115 134.02 74.566 81.831 61.912 67.523 58 131 80 80 65 65 1 1 1 1 1 1 9250.8 238 461 240 354 461 461 1 AAYNLVR Unmodified 805.44464 0.44463717 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 6 0 1 39.604 39.604 2 0.0095576 10010 TMT1-5 111.81 67.202 1514.2 2469.8 1833 1431.2 1952.1 2219.1 1433 2446 1897 1443 2002 2134 1 1 1 1 1 1 212470 239 1747 241 355 462 462 1 AAYNPGQAVPWNAVK Unmodified 1584.8049 0.80487601 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 8 0 1 59.306 59.306 3 1.527E-10 17267 TMT1-7 119.01 108.23 99.734 107.61 98.44 111.46 96.358 151.82 94 109 102 109 102 145 1 1 1 1 1 1 17917 240 2162 242 356 463 463 1 AAYNQVK Unmodified 792.413 0.41300269 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 6 0 1 34.632 34.632 2 0.013106 8018 TMT1-5 102.98 52.853 138.43 224.05 169.07 113.46 172.68 180.56 131 222 174 116 176 174 1 1 1 1 1 1 20116 241 851 243 357 464 464 1 AAYSFYNVHTQTPLLDLMSDALVLAK Unmodified 2880.4732 0.47316669 959 P30419-2;P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 0 0 9 0 1 92.822 92.822 4 2.1554E-33 28430 TMT1-8 111.97 90.376 23.101 59.581 34.31 21.335 35.393 37.366 22 58 36 22 36 36 1 1 1 1 1 1 4115.9 242 959 244 358 465 465 1 AAYVLFYQR Unmodified 1129.592 0.59202969 3012;1671 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;P51784;Q13107-2;Q13107 USP15;USP11;USP4 Ubiquitin carboxyl-terminal hydrolase 15;Ubiquitin carboxyl-terminal hydrolase 11;Ubiquitin carboxyl-terminal hydrolase 4 no no 0 0 0 0 0 9 0 1 59.625 59.625 2 0.013185 15601 TMT1-8 88.35 56.236 61.611 56.609 56.757 51.445 48.651 67.902 58 58 58 51 51 65 1 1 1 1 1 1 10059 243 3012;1671 245 359 466 466 1 ACADATLSQITNNIDPVGR Unmodified 2014.9742 0.97420254 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 0 5 0 1 66.088 66.088 3 6.2093E-24 20350 TMT1-4 139.88 123.27 54.25 33.795 50.903 44.408 34.588 29.927 51 36 51 44 36 29 1 1 1 1 1 1 19840 244 1453 246 360 467 467 1 ACANPAAGSVILLENLR Unmodified 1767.9302 0.93015288 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 5 2.83 1 2 69.108 69.108 2;3 1.3195E-35 21008 TMT1-6 184.8 157.16 201.92 289.49 262.9 219.31 349.35 316.23 191 289 269 221 354 306 3 3 3 3 3 3 370430 245 397 247 361;362;363 468;469;470 470 3 ACEAFEAQECER Unmodified 1498.5817 0.58167729 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 2 0 1 39.292 39.292 3 0.00018048 10744 TMT1-1 93.011 74.182 131.38 166.5 139.34 154.78 162.17 157.4 124 167 145 152 167 152 2 2 2 2 2 2 14204 246 2662 248 364 471;472 472 2 ACEFAGFQCQIQFGPHNEQK Unmodified 2395.0474 0.047384258 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.33 0.471 2 1 57.588 57.588 3;4 2.6474E-31 17097 TMT1-5 151.87 129.64 1194.9 1612.9 1233.2 977.12 1381.8 1373 1128 1611 1275 985 1409 1325 5 5 5 5 5 5 478260 247 3010 249 365;366;367 473;474;475;476;477 474 5 ACEPGVDYVYK Unmodified 1299.5805 0.58053831 409;33 P01024;CON__Q2UVX4 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 no no 0 0 0 0 0 4 0 1 50.341 50.341 3 0.014019 14419 TMT1-3 57.836 37.997 292.64 356.38 286.86 261.23 369.35 439.31 276 358 297 261 379 422 2 2 2 2 2 2 16665 + 248 409;33 250 368 478;479 478 2 ACFHCETCK Unmodified 1211.4522 0.45218344 1801 Q14847;Q14847-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 31.947 31.947 3 0.00018708 7064 TMT1-5 126.24 113.68 482.02 553.77 572.14 467.88 565.37 607.48 455 560 581 469 581 585 2 2 2 2 2 2 69451 249 1801 251 369;370 480;481 481 2 ACGDSTLTQITAGLDPVGR Unmodified 1930.9418 0.94183978 1454 P62879 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes yes 0 0 0 0 0 5 0 1 67.284 67.284 3 2.6702E-13 20761 TMT1-4 109.72 89.067 54.301 42.572 34.834 28.962 35.042 37.376 51 44 36 29 36 36 1 1 1 1 1 1 15842 250 1454 252 371 482 482 1 ACGLVASNLNLKPGECLR Acetyl (N-term) 2013.0136 0.013564934 586 P09382 LGALS1 Galectin-1 yes yes 1 0 0 0 1 6.5 0.5 1 1 63.571 63.571 3 4.1375E-07 18882 TMT1-6 67.995 57.14 230.29 352.75 310.49 276.98 270.53 371.78 218 351 319 275 283 356 2 2 2 2 2 2 153880 251 586 253 372;373 483;484 484 2 ACGVDYEVK Unmodified 1039.4644 0.46444592 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 0 4 0 1 43.728 43.728 2 0.0012645 11783 TMT1-3 121.96 102.7 342.38 502.27 461.15 227.11 410.94 461.58 324 501 465 240 418 444 2 2 2 2 2 2 28146 252 1179 254 374 485;486 486 2 ACGVNCHK Unmodified 944.39565 0.39565484 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 6 0 1 24.843 24.843 3 0.0075643 4349 TMT1-5 77.674 46.302 46.761 19.262 59.423 43.594 50.844 14.539 44 22 58 44 51 15 1 1 1 1 1 1 3163.4 253 2085 255 375 487 487 1 ACGVSRPVIACSVTIK Unmodified 1716.9015 0.90149529 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 1 9 0 1 47.481 47.481 3 0.034879 10803 TMT1-8 40.014 12.365 99.681 107.46 107.47 79.042 105.98 128.09 94 109 109 80 109 123 1 1 1 1 1 1 6459.2 254 1323 256 376 488 488 1 ACIDSNEDGDLSK Unmodified 1422.5933 0.59328784 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 2 0 1 44.86 44.86 3 0.0040749 12852 TMT1-1 64.394 6.7985 77.391 93.488 78.337 49.908 62.024 106.96 73 94 80 51 65 102 1 1 1 1 1 1 15834 255 934 257 377 489 489 1 ACLDYPVTSVLPPASLCK Unmodified 1989.9904 0.99036988 1290 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 0 0 7.67 0.471 1 2 71.616 71.616 3;4 5.7774E-11 22058 TMT1-7 115.31 84.35 322.65 368.25 283.11 326 365.89 392.51 304 371 297 320 377 378 6 6 6 6 6 6 38281 256 1290 258 378;379;380 490;491;492;493;494;495 493 6 ACLISLGYDIGNDPQGEAEFAR Unmodified 2395.1114 0.1114243 672 P12814 ACTN1 Alpha-actinin-1 yes yes 0 0 0 0 0 4.75 0.829 2 1 1 72.569 72.569 3;4 9.3072E-64 22904 TMT1-4 202.6 187.91 268.93 339.34 319.8 276.05 348.63 291.73 254 341 327 276 355 283 5 5 5 5 5 5 326920 257 672 259 381;382;383;384 496;497;498;499;500 499 5 ACLISLGYDVENDR Unmodified 1623.7563 0.75627084 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 5 0 1 64.685 64.685 3 4.6092E-19 19714 TMT1-4 162.72 135.75 100.47 137.89 129.51 77.555 115.2 105.44 95 138 131 80 117 102 2 2 2 2 2 2 31788 258 195 260 385 501;502 501 2 ACLISLGYDVENDRQGEAEFNR Unmodified 2555.1711 0.17106445 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 4 0 1 63.457 63.457 3 0.003764 19584 TMT1-3 48.244 38.029 38.24 35.134 35.356 29.074 27.414 46.122 36 36 36 29 29 44 1 1 1 1 1 1 6657.3 259 195 261 386 503 503 1 ACNCLLLK Unmodified 990.49906 0.49905728 581 P09104;P09104-2;P13929-3;P13929-2;P13929 ENO2;ENO3 Gamma-enolase;Beta-enolase yes no 0 0 0 0 0 8 0 1 51.462 51.462 2 0.0057335 14156 TMT1-7 114.78 92.697 138.85 173.41 141.31 100.53 134.55 150.73 131 174 145 102 138 145 1 1 1 1 1 1 20025 260 581 262 387 504 504 1 ACPLDQAIGLLVAIFHK Acetyl (Protein N-term) 1907.0339 0.033889671 510 P06703 S100A6 Protein S100-A6 yes yes 0 1 0 0 0 9 0 1 115.13 115.13 3 1.549E-09 35331 TMT1-8 88.73 64.171 112.87 222.04 137.55 122.26 153.34 214.15 107 218 145 122 159 205 3 3 3 3 3 3 67852 261 510 263 388 505;506;507 505 3 ACQSIYPLHDVFVR Unmodified 1703.8454 0.84536062 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 7 0 1 55.805 55.805 3 0.00016672 15756 TMT1-6 80.632 47.428 252.97 338.66 297.75 239.42 274.12 317.31 239 339 305 240 283 305 2 2 2 2 2 2 53007 262 1386 264 389 508;509 508 2 ACVGNAYHK Unmodified 1018.4654 0.46544897 2900 Q9UKX7-2;Q9UKX7 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 0 6 0 1 31.632 31.632 3 0.002113 6873 TMT1-5 87.696 60.075 92.441 108.73 60.761 57.894 99.884 120.81 87 109 65 58 102 116 1 1 1 1 1 1 3703.2 263 2900 265 390 510 510 1 ACVHVYK Unmodified 875.43236 0.43235793 2821 Q9P253 VPS18 Vacuolar protein sorting-associated protein 18 homolog yes yes 0 0 0 0 0 7 0 1 34.525 34.525 3 0.0012301 7410 TMT1-6 80.377 69.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 264 2821 266 391 511 511 1 ACVVHGSDLK Unmodified 1084.5335 0.53352853 481 P05023-3;P05023-4;P05023 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 no no 0 0 0 0 0 6 0 1 35.41 35.41 3 0.0013486 8349 TMT1-5 88.681 60.938 153.81 188.4 139.33 122.95 169.09 211.57 145 189 145 123 174 203 1 1 1 1 1 1 11337 265 481 267 392 512 512 1 ACYLSINPQKDETLETEK Unmodified 2138.0201 0.02014968 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 1 5 0 1 55.035 55.035 4 3.5838E-08 15988 TMT1-4 101.05 78.181 107.99 161.14 108.99 141.71 139.73 158.04 102 160 116 138 145 152 1 1 1 1 1 1 16650 266 1381 268 393 513 513 1 ACYYSLASK Unmodified 1061.4852 0.48518136 1114 P43403;P43403-3;P43403-2 ZAP70 Tyrosine-protein kinase ZAP-70 yes no 0 0 0 0 0 7 0 1 48.881 48.881 3 0.00082822 13070 TMT1-6 99.802 75.42 77.144 108.99 106.82 93.962 128.33 127.46 73 109 109 94 131 123 1 1 1 1 1 1 8512.4 267 1114 269 394 514 514 1 ADAASQVLLGSGLTILSQPLMYVK Acetyl (Protein N-term) 2516.356 0.35601167 3052 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 1 0 0 0 9 0 1 111.98 111.98 3 1.3477E-31 34624 TMT1-8 45.363 25.973 7.3961 15.356 6.3003 7.0726 10.789 11.418 7 15 7 7 11 11 1 1 1 1 1 1 5661.8 268 3052 270 395 515 515 1 ADAEGESDLENSR Unmodified 1391.5801 0.58008061 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 1.5 0.5 2 2 34.352 34.352 2;3 3.045E-21 8741 TMT1-1 186.36 161.98 209.43 283.59 267.29 225.01 206.67 290.45 198 284 273 224 217 278 4 4 4 4 4 4 84507 269 3010 271 396;397;398;399 516;517;518;519 518 4 ADAEGESDLENSRK Unmodified 1519.675 0.67504363 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 2.5 1.12 1 1 1 1 34.616 34.616 3;4 7.2835E-06 8829 TMT1-1 100.02 97.58 508.09 611.36 649.99 437.23 612.05 751.12 480 617 655 446 629 721 4 4 4 4 4 4 108960 270 3010 272 400;401;402;403 520;521;522;523;524 521 5 ADAETLRK Unmodified 902.48214 0.48214489 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 1 4.5 0.5 1 1 32.677 32.677 3 0.0032897 7112 TMT1-4 99.136 17.945 947.71 1875 1253.4 975.5 1345.3 1890 899 1842 1307 984 1391 1809 2 2 2 2 2 2 89575 271 578 273 404;405 525;526 526 2 ADAEYYAAHK Unmodified 1137.5091 0.50908792 280 O75477 ERLIN1 Erlin-1 yes yes 0 0 0 0 0 4 0 1 38.118 38.118 3 0.036317 9564 TMT1-3 48.44 22.321 207 360.64 250.56 230.03 283.83 321.29 196 356 262 229 292 309 1 1 1 1 1 1 16922 272 280 274 406 527 527 1 ADAFGDELFSVFEGDSTTAAGTK Acetyl (Protein N-term) 2377.0598 0.059765888 1094 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 1 0 0 0 4 0 1 100.44 100.44 3 9.2461E-07 31527 TMT1-3 42.746 29.558 6.3787 4.7913 5.8999 6.1159 4.8073 4.1268 6 5 6 6 5 4 1 1 1 1 1 1 1105.2 273 1094 275 407 528 528 1 ADAVQDSEMVELVELEIR Unmodified 2044.9987 0.99868596 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 3 0 1 82.885 82.885 3 0.00049434 27923 TMT1-2 64.2 46.061 0 7.3521 5.7361 31.355 0 15.99 0 7 7 29 0 15 0 1 1 1 0 1 1298.7 274 1180 276 408 529 529 1 ADAWEEIRR Acetyl (Protein N-term) 1186.5731 0.57308516 327 O94874;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 1 0 0 1 2 0 1 49.24 49.24 2 0.010669 14593 TMT1-1 45.489 19.105 23.289 28.802 28.902 14.149 27.844 53.571 22 29 29 15 29 51 1 1 1 1 1 1 6404.6 275 327 277 409 530 530 1 ADCASGIFLAAEK Unmodified 1351.6442 0.6442012 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 6 0 1 60.835 60.835 3 7.4829E-06 18432 TMT1-5 105.65 74.013 160.76 203.61 219.42 149.92 167.04 235.08 152 205 221 152 174 225 1 1 1 1 1 1 15134 276 199 278 410 531 531 1 ADCILYYGFGDIFR Unmodified 1708.7919 0.79192806 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 0 8 0 1 86.105 86.105 2 1.0253E-05 27668 TMT1-7 83.182 67.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277 1125 279 411 532 532 1 ADCLVPSEIR Unmodified 1158.5703 0.57030797 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 4 0 1 50.791 50.791 2 0.027481 14561 TMT1-3 72.042 31.997 122.72 192.76 131.19 133.45 101.61 182.58 116 191 138 131 109 174 1 1 1 1 1 1 21245 278 2486 280 412 533 533 1 ADCTITMADSDFLALMTGK Unmodified 2059.9264 0.92644899 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 0 7 0 1 89.125 89.125 3 0.0065389 28761 TMT1-6 35.624 25.284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279 844 281 413 534 534 1 ADDADEFGYSR Unmodified 1244.4946 0.49456007 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 43.093 43.093 2 1.3043E-08 12155 TMT1-1 162.34 147.65 46.478 81.072 54.689 66.633 61.255 106.98 44 80 58 65 65 102 1 1 1 1 1 1 13623 280 2071 282 414 535 535 1 ADDGRPFPQVIK Unmodified 1341.7041 0.70409934 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 6.33 0.471 2 1 47.928 47.928 3;4 6.8917E-07 13369 TMT1-5 116.81 79.256 4402 5543.5 4770.7 3788.7 4447.9 5736.1 4155 5564 4893 3803 4607 5500 4 4 4 4 4 4 651960 281 459 283 415;416;417 536;537;538;539;540 537 5 ADDKETCFAEEGK Unmodified 1498.6246 0.62458797 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 3 0.816 1 1 1 42.322 42.322 3 1.2828E-05 12208 TMT1-2 106.14 70.483 511.05 534.87 758.48 460.45 718.63 723.56 483 547 752 475 731 698 3 3 3 3 3 3 61458 + 282 28 284 418;419;420 541;542;543 542 3 ADDLDFETGDAGASATFPMQCSALR Acetyl (Protein N-term) 2687.1479 0.14794574 1477 P63241;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 0 1 0 0 0 3 0 1 79.577 79.577 3 5.2785E-06 26706 TMT1-2 40.986 36.915 7.4147 0 16.193 0 0 0 7 0 15 0 0 0 1 0 1 0 0 0 4581.4 283 1477 285 421 544 544 1 ADDLGKGGNEESTK Unmodified 1419.6478 0.64776625 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 1 4 0 2 36.336 36.336 3;4 4.5886E-06 8844 TMT1-3 103.14 59.339 1423.2 1775.7 1140.4 1212.5 1129.7 1544.4 1341 1777 1209 1191 1184 1479 3 3 3 3 3 3 135370 284 392 286 422;423 545;546;547 545 3 ADDPSSYMEVVQAANTSGNWEELVK Unmodified 2739.2334 0.23338993 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5 0 1 81.443 81.443 4 1.4068E-10 26382 TMT1-4 81.373 79.06 92.284 93.179 100.42 87.277 97.229 128.34 87 95 102 87 101 123 2 2 2 2 2 2 25565 285 1540 287 424 548;549 549 2 ADDVDQQQTTNTVEEPLDLIR Acetyl (N-term) 2441.1558 0.15579154 1430 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 1 0 0 0 0 2 0 1 76.041 76.041 3 5.5664E-06 24763 TMT1-1 56.081 43.648 0 0 0 23.934 5.9722 7.2916 0 0 0 22 7 7 0 0 0 1 1 1 7421.8 286 1430 288 425 550 550 1 ADDYEQVK Unmodified 966.42944 0.42944062 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 39.88 39.88 2 0.00085828 11011 TMT1-1 112.84 93.365 139.46 112.51 90.334 88.012 90.123 121.08 131 116 94 87 94 116 1 1 1 1 1 1 6247.7 287 1391 289 426;427 551;552 551 2 ADDYIEITGAGGK Unmodified 1308.6198 0.61976058 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 4 0 1 55.757 55.757 2 4.0227E-05 16491 TMT1-3 105.17 69.756 84.901 132.9 45.201 35.445 64.301 59.993 80 131 51 36 65 58 1 1 1 1 1 1 36423 288 3006 290 428 553 553 1 ADDYIEITGAGGKK Unmodified 1436.7147 0.7147236 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 5 0 1 50.288 50.288 3 0.0010723 14119 TMT1-4 55.186 32.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 289 3006 291 429 554 554 1 ADEDPALFQSVK Unmodified 1318.6405 0.64049603 1166 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 0 4 0 1 57.044 57.044 3 0.00052819 17044 TMT1-3 84.289 70.543 61.005 86.222 133.54 61.042 108.64 74.718 58 87 131 65 109 73 1 1 1 1 1 1 11972 290 1166 292 430 555 555 1 ADEGISFR Unmodified 893.4243 0.42429566 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 3 0 1 42.872 42.872 2 0.015049 12427 TMT1-2 93.162 51.935 847.75 1270.7 893.13 950.78 1012.2 1235.4 801 1262 939 936 1050 1186 1 1 1 1 1 1 201240 291 1606 293 431 556 556 1 ADENYYK Unmodified 901.38176 0.38176214 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 3 0 1 38.465 38.465 2 0.0038791 10700 TMT1-2 85.212 50.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 292 1115 294 432 557 557 1 ADEWLMK Unmodified 891.41604 0.41603916 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 5.5 0.5 1 1 59.042 59.042 2 0.0079653 17511 TMT1-4 121.52 55.262 2120.7 2482.4 2321.3 1848.1 2010.1 2745.2 2001 2504 2369 1852 2093 2629 4 4 4 4 4 4 307880 293 1019;1020 295 433;434 558;559;560;561 558 4 ADFCIIHYAGK Unmodified 1293.6176 0.61759251 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 4 3 1 1 55.98 55.98 3 7.7791E-06 13791 TMT 1-phospho 116.23 99.601 3840.7 4727.2 4756.3 3696 4542.4 6122.5 3628 4761 4828 3719 4706 5865 4 4 4 4 4 4 749870 294 1019;1020 296 435;436 562;563;564;565 562 4 ADFDDRVSDEEK Acetyl (N-term) 1466.6161 0.61613177 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 1 0 0 0 1 2 0 1 46.166 46.166 3 0.0031786 13365 TMT1-1 99.011 76.682 146.07 195.85 170.36 121.76 134.07 166.73 138 196 174 123 139 160 1 1 1 1 1 1 36228 295 1277 297 437 566 566 1 ADFLEQPVLGFVR Unmodified 1489.7929 0.79291434 440 P02730-2;P02730 SLC4A1 Band 3 anion transport protein yes no 0 0 0 0 0 7 0 1 77.186 77.186 2 2.5903E-05 24165 TMT1-6 109.39 73.944 46.626 57.741 49.494 44.65 26.185 61.081 44 58 51 44 29 58 1 1 1 1 1 1 11534 296 440 298 438 567 567 1 ADFSGMSQTDLSLSK Unmodified 1585.7294 0.72938739 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 6 0 1 62.004 62.004 3 7.6166E-08 18881 TMT1-5 86.497 67.173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 297 1014 299 439 568 568 1 ADFVLAANSYDLAIK Unmodified 1609.8352 0.83517309 1772 Q14318-2;Q14318 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 0 0 7 0 1 74.726 74.726 3 1.8072E-10 23293 TMT1-6 117.08 90.957 46.634 65.316 41.848 36.063 42.029 68.091 44 65 44 36 44 65 1 1 1 1 1 1 7966.7 298 1772 300 440 569 569 1 ADGETILK Unmodified 845.44945 0.44944778 1274 P52788-2;P52788 SMS Spermine synthase yes no 0 0 0 0 0 4 0 1 45.409 45.409 2 0.0041618 12454 TMT1-3 127.02 57.589 273.29 466.77 381.15 305.58 385.73 420.72 259 462 392 307 396 405 1 1 1 1 1 1 26172 299 1274 301 441 570 570 1 ADGGAEYATYQTK Unmodified 1373.6099 0.60992418 723 P15529-16;P15529-7;P15529-4;P15529-6;P15529-3;P15529-5;P15529-2 CD46 Membrane cofactor protein yes no 0 0 0 0 0 4 0 1 42.055 42.055 3 0.0088487 11151 TMT1-3 57.434 35.236 231.23 366.34 320.86 195.84 251.36 307.3 219 364 326 201 259 295 1 1 1 1 1 1 13968 300 723 302 442 571 571 1 ADGGTQVIDTK Unmodified 1103.5459 0.54586736 600 P09622;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 4 0 1 41.136 41.136 3 0.034343 10726 TMT1-3 48.044 18.697 99.569 130.89 106.41 71.171 121 127.67 94 131 109 73 123 123 1 1 1 1 1 1 24863 301 600 303 443 572 572 1 ADGIVSK Unmodified 688.37555 0.37555455 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 0 5 0 1 39.993 39.993 2 0.046598 10010 TMT1-4 83.265 31.477 344.25 663.45 549.88 301.27 312.91 597.63 327 654 559 311 332 569 1 1 1 1 1 1 71434 302 1476 304 444 573 573 1 ADGLAVIGVLMK Unmodified 1185.6791 0.67913014 405 P00915 CA1 Carbonic anhydrase 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 79.452 79.452 2 2.1892E-09 23270 TMT1-8 145.89 102.64 170.05 148.84 148.44 140.05 103.14 129.24 160 153 152 138 109 124 3 3 3 3 3 3 21458 303 405 305 445;446 574;575;576 576 3 ADGQVAELLLR Acetyl (N-term) 1225.6667 0.6666512 2960 Q9Y285-2;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 1 0 0 0 0 3 0 1 77.137 77.137 2 1.7216E-81 25864 TMT1-2 177.97 124.22 0 0 37.199 23.14 0 7.462 0 0 37 22 0 7 0 0 2 1 0 1 14161 304 2960 306 447 577;578 578 2 ADGYEPPVQESV Unmodified 1289.5776 0.57756142 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 2 0 2 54.233 54.233 2 7.2517E-05 16647 TMT1-1 107.24 93.086 30.764 28.189 35.47 36.715 27.613 30.126 29 29 36 36 29 29 1 1 1 1 1 1 38026 305 1386 307 448;449 579;580 579 2 ADGYVLEGK Unmodified 950.47091 0.4709115 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 4 0 1 48.695 48.695 3 0.030816 13740 TMT1-3 51.445 16.638 187.65 329.5 282.08 270.96 331.95 327.38 178 326 291 269 340 316 1 1 1 1 1 1 19581 306 1417 308 450 581 581 1 ADHDFVVQEDFMK Unmodified 1579.6977 0.69769333 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 4 0 1 56.732 56.732 3 5.2123E-05 16923 TMT1-3 98.531 73.972 77.646 79.086 47.741 51.737 61.683 114.43 73 80 51 51 65 109 1 1 1 1 1 1 11638 307 1437 309 451 582 582 1 ADHGEPIGR Unmodified 950.45699 0.45699277 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 2 0.816 1 1 1 22.71 22.71 3 0.00020499 4303 TMT1-1 124.92 95.179 120.32 183.57 180.99 121.12 192.83 132.01 114 183 183 124 194 129 4 4 4 4 4 4 22174 308 561 310 452;453;454 583;584;585;586 585 4 ADHQPLTEASYVNLPTIALCNTDSPLR Unmodified 2995.4709 0.47093486 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 6 0 1 69.036 69.036 4 6.0196E-08 21614 TMT1-5 68.386 56.072 30.705 20.47 51.878 43.113 42.218 53.161 29 22 51 43 44 51 1 1 1 1 1 1 12013 309 579 311 455 587 587 1 ADIDISGPNVDVDVPDVNIEGPDAK Unmodified 2563.229 0.22895648 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 72.81 72.81 4 0.02251 23218 TMT1-3 32.985 17.219 46.518 81.185 47.773 51.705 63.297 67.484 44 80 51 51 65 65 1 1 1 1 1 1 6030 310 1632 313 456 588 588 1 ADIDVSGPSVDTDAPDLDIEGPEGK Unmodified 2511.15 0.15003746 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 0 2 67.774 67.774 3;4 4.5004E-16 22255 TMT1-2 104.23 89.685 92.752 192.88 117.59 101.94 135 135.79 88 189 124 102 138 131 4 4 4 4 4 4 17327 311 1632 314 457;458 589;590;591;592 591 4 ADIEISGPK Unmodified 928.48656 0.48656157 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4.5 0.5 1 1 48.202 48.202 2 0.0013929 13316 TMT1-4 120.12 68.773 253.06 388.56 240.17 226.01 297.77 316.63 239 385 254 225 305 305 2 2 2 2 2 2 26351 312 1632 315 459;460 593;594 594 2 ADIFMFDEPSSYLDVK Unmodified 1875.8601 0.86006721 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 6 0 1 82.378 82.378 3 0.0045009 26872 TMT1-5 41.554 23.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313 1383 316 461 595 595 1 ADIFVDPVLHTACALDIK Unmodified 1997.0292 0.029198224 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 0 6 0 1 77.479 77.479 3 0.0030174 24968 TMT1-5 41.912 17.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314 2327 317 462 596 596 1 ADIGCTPGSGK Unmodified 1061.4812 0.48115861 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 5 0 1 38.543 38.543 2 0.033191 9497 TMT1-4 65.627 29.102 15.717 21.591 45.3 20.946 21.265 22.845 15 22 44 22 22 22 1 1 1 1 1 1 4843.2 315 409 318 463 597 597 1 ADILEDKDGK Unmodified 1102.5506 0.55061839 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 4.5 0.5 1 1 48.059 48.059 3 0.0019415 13256 TMT1-4 90.653 59.425 1196.7 2068.9 1447.5 1066.6 1521.8 2048.1 1133 2043 1502 1081 1569 1962 2 2 2 2 2 2 97218 316 1261 319 464;465 598;599 599 2 ADILQVGLR Unmodified 983.57638 0.57637963 2607 Q9H074-3;Q9H074-2;Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes no 0 0 0 0 0 7 0 1 58.861 58.861 2 0.034911 17052 TMT1-6 72.042 22.081 77.669 55.404 64.045 57.678 100.96 89.861 73 58 65 58 102 87 1 1 1 1 1 1 7345.6 317 2607 320 466 600 600 1 ADIQLLVYTIDDLIDK Unmodified 1846.9928 0.99279594 2749 Q9NUJ1;Q9NUJ1-2 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 0 6 0 1 108.27 108.27 3 5.1581E-09 34353 TMT1-5 113.29 89.959 11.681 12.883 9.634 7.9493 11.722 13.523 11 13 10 8 12 13 2 2 2 2 2 2 2424.8 318 2749 321 467 601;602 602 2 ADISGNITK Unmodified 917.48181 0.48181054 2797 Q9NZD2 GLTP Glycolipid transfer protein yes yes 0 0 0 0 0 6 0 1 43.853 43.853 2 0.0022095 11714 TMT1-5 77.192 20.144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319 2797 322 468 603 603 1 ADIWSFGITAIELATGAAPYHK Unmodified 2331.1899 0.18993262 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 9 0 1 97.298 97.298 4 2.7624E-17 30012 TMT1-8 107.72 83.671 61.637 71.791 39.558 52.742 34.189 60.852 58 72 43 51 37 58 2 2 2 2 2 2 7303.6 320 367 323 469 604;605 604 2 ADIWSLGITAIELAK Unmodified 1599.8872 0.88720866 2825 Q9P289;Q9P289-2 STK26 Serine/threonine-protein kinase 26 no no 0 0 0 0 0 8.5 0.5 1 1 95.158 95.158 3 1.6346E-11 29260 TMT1-8 119.32 94.461 122.91 151.19 134.47 115.8 158.19 142.59 116 152 138 116 161 138 3 3 3 3 3 3 21816 321 2825 324 470;471 606;607;608 608 3 ADIWSLGITAIELAR Unmodified 1627.8934 0.89335667 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 8 0 1 92.783 92.783 3 3.8509E-19 30098 TMT1-7 159.82 120 54.006 72.837 71.373 66.692 63.392 75.143 51 73 73 66 66 72 2 3 3 3 3 2 34105 322 3054 325 472 609;610;611 610 3 ADKDYHFK Unmodified 1022.4821 0.48214489 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 1 6 0 2 37.06 37.06 3;4 0.01051 9006 TMT1-5 81.594 55.935 482.32 797.64 494.65 543.01 536.04 873.75 456 788 526 533 565 834 2 2 2 2 2 2 185980 323 517 326 473;474 612;613 612 2 ADKEAAFDDAVEER Acetyl (Protein N-term) 1606.7111 0.71109479 1630 Q09028-3;Q09028 RBBP4 Histone-binding protein RBBP4 yes no 0 1 0 0 1 2 0 1 53.947 53.947 3 0.00050042 16431 TMT1-1 54.812 36.399 77.642 62.886 62.145 90.25 60.462 98.479 73 65 65 87 65 94 1 1 1 1 1 1 21667 324 1630 327 475 614 614 1 ADKLAEEHSS Unmodified 1085.4989 0.49891717 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 1 2.5 0.5 1 1 32.722 32.722 3 0.012945 8361 TMT1-2 67.022 46.076 376.02 463.28 430 416.42 381.29 554.1 355 466 442 411 401 530 2 2 2 2 2 2 40036 325 508 328 476;477 615;616 616 2 ADLAAVEAK Unmodified 886.476 0.47599688 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 48.67 48.67 2 4.9942E-06 13752 TMT1-3 131.44 103.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 326 1763 330 478 617 617 1 ADLAECNIK Acetyl (N-term) 1074.5016 0.5015597 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 1 0 0 0 0 2 0 1 54.918 54.918 2 0.00026868 16853 TMT1-1 87.616 54.776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327 998 331 479 618 618 1 ADLAEEYSK Unmodified 1024.4713 0.47130543 1489 P68036;P68036-3;P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 0 3.5 0.5 1 1 47.588 47.588 2 0.0011314 13263 TMT1-3 123.86 80.052 330.76 505.77 426 284.18 451.57 390.06 313 503 435 291 457 378 3 3 3 3 3 3 45985 328 1489 332 480;481 619;620;621 620 3 ADLAEEYSKDR Unmodified 1295.5994 0.59935949 1489 P68036;P68036-3;P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 1 3 1 1 1 42.154 42.154 3 0.00045289 12094 TMT1-1 76.522 57.128 356.58 466.41 448.48 461.17 442.34 483.07 337 468 461 454 459 465 1 1 1 1 1 1 33880 329 1489 333 482;483 622;623 622 2 ADLDKLNIDSIIQR Acetyl (N-term) 1654.889 0.88899957 1044 P36873;P36873-2 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 1 0 0 0 1 5 0 1 74.11 74.11 3 0.00013075 23434 TMT1-4 59.294 30.318 30.605 51.492 42.382 44.502 56.556 60.214 29 51 44 44 58 58 1 1 1 1 1 1 19865 330 1044 334 484 624 624 1 ADLDVSGPK Unmodified 900.45526 0.45526144 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4.2 0.748 1 2 2 44.626 44.626 2;3 0.00030542 12276 TMT1-3 141.48 0 1325.2 2424.4 1363 1133.2 1620.6 1886.4 1254 2384 1447 1139 1661 1813 5 5 5 5 5 5 378970 331 1632 335 485;486;487;488;489 625;626;627;628;629 627 5 ADLEAQR Unmodified 801.39808 0.39808091 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 2 0 1 30.481 30.481 2 0.022657 7143 TMT1-1 95.541 26.308 123.15 136.76 105.57 79.599 82.374 144.76 116 138 109 80 87 138 1 1 1 1 1 1 32491 332 1378 336 490 630 630 1 ADLEEQLSDEEK Acetyl (N-term) 1446.6362 0.63619851 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 1 0 0 0 0 2 0 1 63.781 63.781 2 1.3278E-23 20276 TMT1-1 120.68 95.297 115.25 175.04 138.88 155.54 123.12 196.89 109 174 145 152 131 188 2 2 2 2 2 2 64247 333 1143 337 491 631;632 631 2 ADLEEQLSDEEKVR Acetyl (N-term) 1701.8057 0.80572345 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 1 0 0 0 1 2 0 1 57.852 57.852 2 1.4428E-05 17981 TMT1-1 83.862 65.998 30.896 28.555 13.026 29.967 50.701 36.929 29 29 15 29 51 36 1 1 1 1 1 1 10145 334 1143 338 492 633 633 1 ADLGALELWR Unmodified 1142.6084 0.60840804 2470 Q99523 SORT1 Sortilin yes yes 0 0 0 0 0 6 0 1 71.214 71.214 2 0.0032091 22490 TMT1-5 96.89 35.917 53.928 64.2 79.162 73.501 83.461 121.27 51 65 80 73 87 116 1 1 1 1 1 1 10213 335 2470 339 493 634 634 1 ADLGVSGPK Unmodified 842.44978 0.44978213 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5.5 0.5 1 1 43.336 43.336 2 0.00033607 11389 TMT1-4 102.07 64.518 200.11 242 246.53 116.7 162.2 207.51 189 244 247 123 167 199 1 1 1 1 1 1 17383 336 1632 340 494;495 635;636 635 2 ADLIAYLK Unmodified 905.52222 0.52221879 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 0 7.5 0.5 1 1 70.26 70.26 2 0.0020237 21601 TMT1-7 138.9 109.32 604.69 354.26 682.71 766.68 716.35 1080.7 569 382 685 751 754 1033 2 2 2 2 2 2 127160 337 1533 341 496;497 637;638 638 2 ADLINNLGTIAK Unmodified 1241.698 0.69795133 545;561;1955 P08238;P07900;P07900-2;Q14568;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 0 7.67 0.471 1 2 66.396 66.396 2;3 1.3028E-05 20011 TMT1-7 107.97 93.506 1248 2064.9 1665.7 1317.5 1904.9 1798.4 1182 2046 1714 1329 1938 1738 5 5 5 5 5 5 545840 338 561;545;1955 342 498;499;500 639;640;641;642;643 641 5 ADLISEDVQR Unmodified 1144.5724 0.57241646 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 2.5 0.5 1 1 48.338 48.338 2 2.5223E-09 14259 TMT1-1 170.95 132.15 130.41 181.96 109.39 102.14 150.2 119.37 123 181 116 102 152 116 1 1 1 1 1 1 35345 339 2325 343 501;502 644;645 644 2 ADLLGIVSELQLK Unmodified 1397.813 0.81298108 2386 Q96CV9-3;Q96CV9;Q96CV9-2 OPTN Optineurin yes no 0 0 0 0 0 8 0 1 88.136 88.136 3 0.00016132 28377 TMT1-7 89.629 57.787 45.653 58.09 32.521 60.957 26.498 30.158 43 58 36 58 29 29 1 1 1 1 1 1 8499 340 2386 344 503 646 646 1 ADLNQGIGEPQSPSR Unmodified 1567.759 0.75904803 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 3 0 1 42.28 42.28 3 0.001051 12254 TMT1-2 67.707 43.516 53.737 94.967 85.292 64.492 78.122 75.589 51 94 87 65 80 73 1 1 1 1 1 1 18144 341 2376 345 504 647 647 1 ADLNTITESSAALQNLIEGSEPILEER Unmodified 2912.4615 0.46147561 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 5 0 1 92.809 92.809 4 0.03938 30708 TMT1-4 24.984 24.974 0 23.305 6.1758 0 15.449 7.0212 0 22 7 0 15 7 0 1 1 0 1 1 770.11 342 1138 346 505 648 648 1 ADLPDQR Unmodified 813.39808 0.39808091 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 2 0 1 32.691 32.691 2 0.0097947 8104 TMT1-1 110.81 66.993 358.2 443.04 376.25 292.11 361.97 429.93 338 445 386 294 373 413 1 1 1 1 1 1 123850 343 50 347 506 649 649 1 ADLPEGVAVSGPSPAEFCR Unmodified 1957.9204 0.92037606 2145 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 0 0 4 0 1 60.311 60.311 3 0.036243 18407 TMT1-3 36.053 25.996 38.06 74.566 32.265 45.382 41.857 60.634 36 73 36 44 44 58 1 1 1 1 1 1 7880.5 344 2145 348 507 650 650 1 ADLQDDTFIGNEPLTPEVR Unmodified 2129.0277 0.027677899 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 2.5 0.5 1 1 66.895 66.895 3 2.614E-17 21436 TMT1-1 117.37 114.45 69.842 110.08 70.717 88.751 54.897 146.61 66 109 73 86 58 139 4 4 3 4 3 4 28247 345 817 349 508;509 651;652;653;654 651 4 ADLSGITGAR Unmodified 959.50361 0.50360861 408 P01011 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 0 0 0 0 0 5 0 1 45.437 45.437 2 0.046201 12242 TMT1-4 65.157 20.135 130.8 136.64 82.098 71.34 189.04 156.64 123 138 87 73 189 152 1 1 1 1 1 1 11782 346 408 350 510 655 655 1 ADLSGMSGAR Unmodified 963.44438 0.44437918 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 5 0 1 38.426 38.426 2 1.7246E-06 9388 TMT1-4 161.28 73.588 175.84 302.22 306.68 169.53 184.26 255.91 167 300 308 175 192 245 1 1 1 1 1 1 53417 347 967 351 511 656 656 1 ADLSLADALTEPSPDIEGEIKR Acetyl (Protein N-term) 2381.1962 0.19619979 919 P27816-2;P27816-6;P27816;P27816-7;P27816-5 MAP4 Microtubule-associated protein 4 yes no 0 1 0 0 1 2.5 0.5 1 1 77.435 77.435 3 1.7552E-10 25911 TMT1-2 48.354 45.958 0 22.917 29.369 28.234 21.83 15.367 0 22 29 29 22 15 0 1 1 2 1 1 5132.9 348 919 352 512;513 657;658 658 2 ADLTALFLPR Unmodified 1115.6339 0.63389451 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 9 0 1 75.954 75.954 2 7.4406E-06 21941 TMT1-8 143.37 107.18 153.26 179.32 238.69 212.34 215.96 280.59 145 182 240 211 225 269 2 2 2 2 2 2 38903 349 1666 353 514 659;660 659 2 ADLTEYLSTHYK Unmodified 1439.6933 0.69325988 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 7 1 1 1 58.65 58.65 3 1.3459E-06 17553 TMT1-5 116.13 91.843 419.64 677.43 491.65 390.83 558.65 632.19 397 671 510 394 572 608 2 2 2 2 2 2 91395 350 979 354 515;516 661;662 661 2 ADLVPYLLK Unmodified 1030.6063 0.60628277 254 O75165 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 0 0 0 0 0 8 0 1 73.542 73.542 2 0.0019673 22885 TMT1-7 109.21 51.719 53.768 87.498 86.426 49.109 78.866 74.502 51 87 87 51 80 72 1 1 1 1 1 1 7176.8 351 254 355 517 663 663 1 ADLYLEGK Unmodified 907.4651 0.46509784 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 5 0 1 53.079 53.079 2 0.0062714 15209 TMT1-4 107.47 73.387 107.49 206.16 154.39 130.65 177.13 180.43 102 203 160 131 181 174 1 1 1 1 1 1 14108 352 2741 356 518 664 664 1 ADMGGAATICSAIVSAAK Unmodified 1692.8175 0.81749089 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 7 0 1 67.563 67.563 3 3.1087E-06 20415 TMT1-6 87.388 60.659 61.405 79.782 71.656 50.143 70.683 98.187 58 80 73 51 73 94 1 1 1 1 1 1 13242 353 932 357 519 665 665 1 ADMQNLVER Oxidation (M);Acetyl (N-term) 1132.5183 0.5182724 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 1 0 1 0 0 2 0 3 51.664 51.664 2 0.0040547 16172 TMT1-1 60.59 29.516 30.835 20.832 29.723 5.609 14.385 30.504 29 22 29 7 15 29 1 1 1 1 1 1 4292.5 354 1555;1556 358 520;521;522 666;667;668 667 248 3 ADMQNLVER Acetyl (Protein N-term) 1116.5234 0.52335778 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 1 0 0 0 2 0 1 54.912 54.912 2 7.3837E-06 16818 TMT1-1 141.39 102.58 61.497 72.483 62.36 74.33 92.621 66.647 58 73 65 73 94 65 2 2 2 2 2 2 79641 355 1555;1556 358 523 669;670 669 2 ADMVIEAVFEDLSLK Unmodified 1678.8488 0.84877424 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 5.5 0.5 1 1 104.11 104.11 3 2.5221E-10 33481 TMT1-4 116.96 91.937 48.72 61.63 54.939 38.38 51.733 87.002 46 61 56 39 54 83 5 4 5 5 5 5 8020.5 356 1076 359 524;525 671;672;673;674;675 671 5 ADMWSFGITAIELATGAAPYHK Unmodified 2349.1464 0.14635325 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 9 0 1 93.786 93.786 4 0.00028699 28837 TMT1-8 48.968 31.051 15.74 36.766 28.511 13.058 28.957 22.626 15 36 29 14 29 22 1 1 1 1 1 1 3860.9 357 2853 360 526 676 676 1 ADNFEYSDPVDGSISR Unmodified 1770.7697 0.7696723 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 2.5 0.5 1 1 54.669 54.669 3 1.6459E-08 16778 TMT1-1 105.19 85.088 101.04 108.18 58.993 97.371 98.618 104.85 95 109 65 94 102 101 2 2 2 2 2 2 33523 358 1043 361 527;528 677;678 677 2 ADPEELFTK Unmodified 1048.5077 0.50769094 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 5 0 1 59.576 59.576 2 0.0016552 17724 TMT1-4 116.05 72.968 99.701 115.07 97.643 119.3 88.941 113.66 94 116 102 116 94 109 1 1 1 1 1 1 11694 359 3054 362 529 679 679 1 ADPSLNPEQLK Unmodified 1210.6194 0.61936665 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 4 0 2 51.772 51.772 2;3 1.8113E-06 14982 TMT1-3 136.5 117.23 183.88 326.9 197.92 221.03 231.82 264.15 174 322 211 217 240 254 2 2 2 2 2 2 27285 360 2926 363 530;531 680;681 681 2 ADPVAGIAGSAAK Acetyl (N-term) 1168.6088 0.60880197 2469 Q99501-3;Q99501-2;Q99501-4;Q99501 GAS2L1 GAS2-like protein 1 yes no 1 0 0 0 0 4 0 1 58.265 58.265 2 0.00043222 17568 TMT1-3 76.143 33.077 115.41 160.38 124.53 132.99 147.17 166.36 109 160 130 131 152 160 2 2 2 2 2 2 12280 361 2469 364 532 682;683 683 2 ADQAPFDTDVNTLTR Acetyl (Protein N-term) 1704.7955 0.79549312 589 P09467 FBP1 Fructose-1,6-bisphosphatase 1 yes yes 0 1 0 0 0 2 0 1 65.528 65.528 2 1.5776E-08 20926 TMT1-1 64.224 58.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362 589 365 533 684 684 1 ADQCYEDVR Unmodified 1154.4662 0.46623683 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 2 0.816 1 1 1 34.195 34.195 2 0.0002727 8686 TMT1-1 142.56 116.18 380.16 781.32 546.38 459.74 557.07 768.68 361 767 569 460 578 736 4 4 4 4 4 4 217450 363 971 366 534;535;536 685;686;687;688 686 4 ADQDSEAMKR Unmodified 1149.5084 0.508436 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 3.5 0.5 1 1 28.665 28.665 3 0.0039275 6779 TMT1-2 80.623 45.185 439.77 543.47 468.11 392.98 344.48 712.92 415 546 481 391 370 678 3 3 3 3 3 3 39722 364 3010 367 537;538 689;690;691 689 3 ADQELLLYSHDNIICGITSVAFSK Unmodified 2693.3371 0.33706714 2674 Q9HAV0 GNB4 Guanine nucleotide-binding protein subunit beta-4 yes yes 0 0 0 0 0 7.5 0.5 1 1 82.062 82.062 3;4 1.1987E-09 26083 TMT1-6 84.107 65.062 122.97 136.27 136.02 100.99 126.91 159.48 116 138 138 102 131 153 3 3 3 3 3 3 14692 365 2674 368 539;540 692;693;694 692 3 ADQELLMYSHDNIICGITSVAFSR Unmodified 2739.2996 0.29963578 1454 P62879;P62879-2 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 0 0 0 0 0 7 0 1 79.528 79.528 3 2.5248E-13 25105 TMT1-6 99.135 82.11 16.025 6.2601 6.4223 15.608 21.511 22.838 15 7 7 15 22 22 1 1 1 1 1 1 9078.1 366 1454 369 541 695 695 1 ADQIETQQLMR Unmodified 1331.6503 0.65034921 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 4 0 2 46.939 46.939 2;3 1.8869E-11 13033 TMT1-3 167.76 123.19 199.35 429.84 215.47 196.65 252.07 346.72 189 420 232 196 261 332 2 2 2 2 2 2 51367 367 2654;2802 370 542;543 696;697 697 2 ADQLTEEQIAEFK Acetyl (N-term) 1562.7464 0.74641766 621 P0DP25;P0DP24;P0DP23 yes no 1 0 0 0 0 2.75 0.433 1 3 72.081 72.081 2;3 9.5153E-46 23822 TMT1-2 113.44 88.59 2303 3661.5 2787.2 2191.3 2916 3137.2 2179 3631 2880 2207 2987 3021 4 4 4 4 4 4 755160 368 621 371 544;545;546;547 698;699;700;701;702 700 5 ADRDESSPYAAMLAAQDVAQR Unmodified 2264.0492 0.049158397 1423 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 1 4 0 1 55.677 55.677 3 1.8357E-05 16513 TMT1-3 63.165 57.848 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369 1423 373 548 703 703 1 ADRDQYELLCLDNTR Unmodified 1880.8687 0.86867484 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 3 0 1 52.289 52.289 3 9.5855E-18 16129 TMT1-2 153.23 110.05 138.93 188.74 115.17 156.63 140.37 119.65 131 188 124 152 145 116 2 2 2 2 2 2 36048 370 451 374 549 704;705 704 2 ADSDGPEFK Unmodified 964.41379 0.41379055 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 3 0 1 41.95 41.95 2 0.0072865 12076 TMT1-2 93.178 56.477 37.632 96.041 86 48.991 86.457 66.823 36 94 87 51 87 65 1 1 1 1 1 1 6750.8 371 2064 375 550 706 706 1 ADSELQLVEQR Acetyl (Protein N-term) 1328.6572 0.65720872 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 1 0 0 0 2 0 1 59.889 59.889 2 1.1531E-119 18804 TMT1-1 218.73 159.38 99.554 145.96 96.134 111.58 97.122 129.41 94 145 102 109 102 124 3 3 3 3 3 3 67000 372 541 376 551 707;708;709 708 3 ADSGTAGGAALAAPAPGPGSGGPGPR Acetyl (N-term) 2158.0403 0.04030827 2380 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes yes 1 0 0 0 0 3 0 1 50.33 50.33 3 8.3309E-10 15405 TMT1-2 43.156 25.904 54.355 41.643 26.556 45.998 27.186 30.138 51 43 29 44 29 29 1 1 1 1 1 1 7430.7 373 2380 377 552 710 710 1 ADSLLAVVK Unmodified 914.54368 0.54368251 1853;1753 Q14151;Q15424-2;Q15424;Q15424-4;Q15424-3 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 0 0 7 0 1 63.962 63.962 2 0.0044353 19005 TMT1-6 99.442 37.242 192.94 271.51 164.92 160.94 218.76 267.72 182 270 175 160 225 257 2 2 2 2 2 2 19875 374 1753;1853 378 553 711;712 711 2 ADTIDTIEK Unmodified 1004.5026 0.50260556 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;Q9Y4E8-4 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 3 0.816 1 1 1 48.587 48.587 2 0.0004817 14627 TMT1-2 136.57 105.19 130.04 213.32 144.45 147.26 139.22 165.52 123 211 152 145 145 159 2 2 2 2 2 2 14265 375 3012 379 554;555;556 713;714;715 714 3 ADTLTLEER Unmodified 1046.5244 0.52440364 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 2.5 0.5 1 1 44.427 44.427 2 9.6687E-09 12802 TMT1-1 170.95 99.255 246.8 387.34 210.9 181.13 278.09 279.88 233 383 225 182 283 270 2 2 2 2 2 2 55786 376 2864 380 557;558 716;717 716 2 ADTLTPEECQQFK Unmodified 1565.7032 0.70317264 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 4 0 1 50.47 50.47 3 1.5166E-08 14530 TMT1-3 123.84 97.713 274.84 524.34 431.35 315.31 348.33 461.23 261 517 442 318 362 442 2 2 2 2 2 2 71508 377 1883 381 559 718;719 719 2 ADTLTPEECQQFKK Unmodified 1693.7981 0.79813565 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 5 0 1 46.839 46.839 3 6.822E-08 12748 TMT1-4 115.12 87.78 200.22 234.75 234.26 134.6 120.71 295.04 189 237 236 138 131 280 1 1 1 1 1 1 27419 378 1883 382 560 720 720 1 ADTPSLGEGPEK Unmodified 1199.567 0.56699673 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 3 0.707 1 2 1 43.927 43.927 2;3 2.0739E-08 12860 TMT1-2 141.44 85.01 323.09 372.89 385.87 296 298.7 409.35 305 377 391 297 312 392 3 3 3 3 3 3 116080 379 1878 383 561;562;563;564 721;722;723;724 722 4 ADTQTYQPYNK Unmodified 1327.6044 0.60444487 1521 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 0 0 0 5 0 1 40.665 40.665 2 4.5397E-17 10330 TMT1-4 189.58 154.07 38.176 51.144 32.673 67.749 71.705 44.858 36 51 36 65 73 44 1 1 1 1 1 1 7981.1 380 1521 384 565 725 725 1 ADTTICLK Unmodified 920.46372 0.46371763 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6 0 1 47.873 47.873 2 0.0032083 13272 TMT1-5 132.69 55.789 375.28 433.87 219.32 352.12 341.73 512.59 353 435 243 340 359 490 2 2 2 2 2 2 41197 381 570 386 566 726;727 726 2 ADVAFHFNPR Unmodified 1172.5727 0.57269123 52 O00214;O00214-2 LGALS8 Galectin-8 yes no 0 0 0 0 0 7 0 1 46.368 46.368 3 0.0045266 12081 TMT1-6 74.162 60.005 53.686 94.826 93.901 41.454 55.377 98.624 51 94 94 44 58 94 1 1 1 1 1 1 6373.6 382 52 387 567 728 728 1 ADVDISGPK Unmodified 900.45526 0.45526144 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4 0 1 44.352 44.352 3 0.0051581 11995 TMT1-3 75.378 1.2162 301.53 496.05 297.85 311.16 294.61 538.45 285 490 317 306 313 513 1 1 1 1 1 1 121500 383 1632 388 568 729 729 1 ADVDVSGPK Unmodified 886.43961 0.43961137 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3.33 0.943 1 2 40.658 40.658 2 7.3266E-18 10456 TMT1-3 161.92 105.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384 1632 389 569;570;571 730;731;732 731 3 ADVFHAYLSLLK Unmodified 1375.75 0.7499869 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 1 77.05 77.05 3 6.5821E-05 22500 TMT1-8 95.401 72.927 107.82 144.5 150.18 138.12 199.82 179.78 102 145 153 138 203 174 2 2 2 2 2 2 23644 385 2116 390 572 733;734 734 2 ADVFPGNDSTASQDVANR Acetyl (Protein N-term) 1904.85 0.85004788 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 1 0 0 0 2 0 1 55.871 55.871 3 0.00035814 17268 TMT1-1 59.502 46.366 23.41 12.951 21.9 22.638 5.4821 23.296 22 14 22 22 7 22 1 1 1 1 1 1 4322.2 386 757 391 573 735 735 1 ADVIQATGDAICIFR Unmodified 1648.8243 0.82429083 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 7 0 1 73.65 73.65 3 0.00014988 22848 TMT1-6 61.444 37.732 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 387 1627 392 574 736 736 1 ADVLTTGAGNPVGDK Unmodified 1413.71 0.70997257 457 P04040 CAT Catalase yes yes 0 0 0 0 0 5 0 1 52.223 52.223 3 5.3444E-06 14835 TMT1-4 98.943 72.508 383.85 548.03 484.16 348.62 618.55 528.14 363 547 494 356 624 512 2 2 2 2 2 2 85278 388 457 393 575 737;738 737 2 ADVLTTGAGNPVGDKLNVITVGPR Unmodified 2363.2809 0.28087289 457 P04040 CAT Catalase yes yes 0 0 0 0 1 8 0 1 66.322 66.322 3 5.008E-23 20006 TMT1-7 120.85 105.12 77.454 70.996 86.943 57.037 62.502 83.496 73 73 87 58 65 80 1 1 1 1 1 1 37440 389 457 394 576 739 739 1 ADVVESWIGEK Unmodified 1231.6085 0.60846762 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 69.113 69.113 3 0.00050793 21481 TMT1-4 91.855 52.145 77.489 93.76 61.688 58.952 40.683 76.657 73 94 65 58 44 73 1 1 1 1 1 1 6957.4 390 1737 395 577 740 740 1 ADVVISAFGSVLSDPK Unmodified 1603.8457 0.84573777 1652 Q12882 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 8 0 1 83.411 83.411 3 2.1084E-06 26667 TMT1-7 91.657 70.817 61.857 33.548 34.996 36.625 33.883 60.861 58 36 36 36 36 58 1 1 1 1 1 1 9431.7 391 1652 396 578 741 741 1 ADVVVSGPK Unmodified 870.48108 0.48108226 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 5.5 0.5 1 1 43.372 43.372 2;3 0.00011577 11391 TMT1-4 149.94 92.833 283.8 387.55 304.16 220.49 330.45 377.53 268 387 313 224 338 363 2 2 2 2 2 2 40394 392 1632 397 579;580 742;743 742 2 ADYEIASK Unmodified 895.42871 0.42871234 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383;Q9NQ29-2;Q9NQ29-3;Q9NQ29 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 0 4 0 1 43.765 43.765 2 0.0061428 11834 TMT1-3 109.21 59.088 183.81 332.12 204.08 221.37 251.81 321.14 174 327 217 218 261 308 1 1 1 1 1 1 22793 393 2414 398 581 744 744 1 ADYSSILQK Unmodified 1023.5237 0.52367535 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 6 0 1 55.067 55.067 2 0.0017622 16129 TMT1-5 113.71 90.966 37.502 135.61 74.265 89.099 83.257 106.36 36 131 80 87 87 102 1 1 1 1 1 1 7928.9 394 2449 399 582 745 745 1 AEAAASALADADADLEER Unmodified 1787.8174 0.81735077 186 O43633 CHMP2A Charged multivesicular body protein 2a yes yes 0 0 0 0 0 2 0 2 61.894 61.894 2;3 4.9636E-19 19564 TMT1-1 139.3 107.41 23.071 75.686 25.734 22.138 19.891 61.26 22 73 29 22 22 58 2 2 2 2 2 2 20527 395 186 400 583;584 746;747 746 2 AEADVASLNR Unmodified 1044.52 0.51998696 595 P09493-8 no no 0 0 0 0 0 2 0 1 39.211 39.211 2 9.6426E-29 10618 TMT1-1 209.6 129.89 271.17 442.18 396.78 255.2 458.05 422.92 257 439 403 263 463 409 2 2 2 2 2 2 76239 396 595 401 585 748;749 748 2 AEADVASLNRR Unmodified 1200.6211 0.62109799 595 P09493-8 no no 0 0 0 0 1 4 0 1 33.405 33.405 3 0.0015383 7657 TMT1-3 87.216 43.908 77.168 92.867 116.36 71.598 66.764 183.58 73 94 116 73 73 174 1 1 1 1 1 1 15687 397 595 402 586 750 750 1 AEAEEDGDLQCLCVK Unmodified 1735.7393 0.73930015 636 P10720 PF4V1 Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) yes yes 0 0 0 0 0 2.6 0.49 2 3 55 55 2;3;4 5.8671E-15 16911 TMT1-1 133.48 106.75 791.76 1024.4 955.02 798.1 913.97 1101.7 748 1028 976 798 945 1058 8 8 8 8 8 8 158130 398 636 403 587;588;589;590;591 751;752;753;754;755;756;757;758;759;760 752 10 AEAEQEKDQLR Unmodified 1315.6368 0.63680763 2386 Q96CV9-3;Q96CV9;Q96CV9-2 OPTN Optineurin yes no 0 0 0 0 1 2 0 1 34.061 34.061 3 9.0273E-07 8580 TMT1-1 130.44 98.714 92.523 92.764 60.628 82.387 76.529 98.02 87 94 65 80 80 94 1 1 1 1 1 1 7231.5 399 2386 404 592 761 761 1 AEAGAGSATEFQFR Unmodified 1440.6634 0.66335673 1137 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 0 4 0 1 48.301 48.301 2 0.00093532 13631 TMT1-3 79.492 56.851 38.228 58.844 17.338 61.572 41.919 37.18 36 58 22 58 44 36 1 1 1 1 1 1 8207.6 400 1137 405 593 762 762 1 AEAGDAALSVAEWLR Acetyl (Protein N-term) 1599.7893 0.78928553 2440 Q96P48-3;Q96P48 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 1 0 0 0 3.5 0.5 1 1 88.842 88.842 2 1.4139E-19 29307 TMT1-3 96.64 77.325 2.1246 25.241 9.0782 2.0701 14.145 21.982 2 24 9 2 14 21 1 3 2 1 2 3 11571 401 2440 406 594;595 763;764;765;766 765 4 AEAGDNLGALVR Unmodified 1184.6149 0.61494998 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 49.55 49.55 2 2.678E-05 13990 TMT1-3 113.44 62.332 324.8 505.38 345.89 383.54 478.66 473.5 307 501 365 378 490 457 3 3 3 3 3 3 94240 402 1180 407 596;597 767;768;769 768 3 AEAGEAGQATAEAECHR Unmodified 1756.7435 0.74347432 363 O95671-3;O95671;O95671-2 ASMTL N-acetylserotonin O-methyltransferase-like protein yes no 0 0 0 0 0 2 0 1 30.841 30.841 3 4.9299E-19 7336 TMT1-1 136.39 119.99 23.409 21.582 14.817 0 22.485 15.348 22 22 15 0 22 15 1 1 1 0 1 1 3531.2 403 363 408 598 770 770 1 AEAGGGWEGSASYK Unmodified 1368.5946 0.59460847 2350 Q969T9;Q969T9-2 WBP2 WW domain-binding protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 45.409 45.409 3 0.0002807 12190 TMT1-4 61.657 49.681 250.27 406.34 333.5 293.39 313.04 482.49 237 403 344 292 328 461 1 1 1 1 1 1 14143 404 2350 409 599;600 771;772 772 2 AEAGPEGVAPAPEGEK Unmodified 1507.7155 0.71545188 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 2 0 1 42.567 42.567 3 2.2564E-05 11944 TMT1-1 84.508 61.975 38.039 58.319 49.509 44.501 34.034 45.933 36 58 51 44 36 44 1 1 1 1 1 1 9607.5 405 3017 410 601 773 773 1 AEAGVPAEFSIWTR Unmodified 1532.7623 0.7623425 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.16 1 2 2 2 1 1 67.399 67.399 2;3 9.6418E-153 20917 TMT1-5 293.71 255.13 1526.4 1955.9 1844.6 1473 1611 2014.6 1442 1964 1881 1476 1671 1933 11 11 11 11 11 11 1488700 406 831 411 602;603;604;605;606;607;608;609;610 774;775;776;777;778;779;780;781;782;783;784;785 777 12 AEAIQNK Unmodified 772.40792 0.40791731 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 33.853 33.853 3 0.03559 7656 TMT1-4 56.122 21.314 85.092 93.5 46.535 58.555 109.82 43.77 80 94 51 58 109 44 1 1 1 1 1 1 21103 407 651 412 611 786 786 1 AEALPLQR Unmodified 896.50797 0.50796571 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 5 0 1 42.087 42.087 2 0.030822 10914 TMT1-4 81.191 72.428 230.95 235.87 298.18 152.06 268.3 146.91 218 241 296 160 268 145 1 1 1 1 1 1 21303 408 856 413 612 787 787 1 AEALTEPLNA Unmodified 1027.5186 0.51858998 2776 Q9NX76 CMTM6 CKLF-like MARVEL transmembrane domain-containing protein 6 yes yes 0 0 0 0 0 2.5 0.5 1 1 58.505 58.505 2 2.9103E-09 18591 TMT1-2 169.57 138.2 393.12 322.51 380.56 305.23 289.92 439.45 370 334 384 305 305 420 4 4 4 4 4 4 178180 409 2776 414 613;614 788;789;790;791 791 4 AEAQVELR Unmodified 914.48214 0.48214489 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 3.75 3.11 1 1 1 1 36.613 36.613 2 5.0075E-13 9735 TMT1-1 190.93 93.893 3852.4 4951.5 4592.9 3294.8 4419.7 4964 3639 4970 4673 3341 4533 4775 6 6 6 6 6 6 1168300 410 565 415 615;616;617;618 792;793;794;795;796;797 794 6 AEASIQAGAGDGEWEESEVK Unmodified 2061.9127 0.91270772 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2 0 1 54.483 54.483 3 1.7633E-24 16681 TMT1-1 113.49 102.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 411 1632 416 619 798 798 1 AEASQELLAQLNR Unmodified 1441.7525 0.75250609 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 5.5 0.5 1 1 58.114 58.114 2 3.0898E-21 17186 TMT1-4 186.27 152.08 115.56 114.39 138.11 84.305 135.81 135.77 109 117 138 87 138 131 2 2 2 2 2 2 21021 412 1081 417 620;621 799;800 799 2 AEASQLGHK Unmodified 939.47739 0.47739386 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.43 2.19 1 1 1 1 2 1 30.351 30.351 3 1.7945E-09 5928 TMT1-6 171.33 114.67 3881.3 4937 4966.1 3653 4478 4462.4 3668 4964 5032 3690 4588 4306 13 13 13 13 13 13 726680 413 3010 418 622;623;624;625;626;627;628 801;802;803;804;805;806;807;808;809;810;811;812;813 810 13 AECLNPSQPSR Unmodified 1257.5772 0.57718426 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 4 0 1 33.78 33.78 2 5.9957E-07 7833 TMT1-3 147.91 105.57 46.553 73.727 48.23 51.5 72.746 36.3 44 73 51 51 73 36 1 1 1 1 1 1 9012.3 414 704 419 629 814 814 1 AECMLQQAER Unmodified 1234.5434 0.54344129 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 3 0.816 1 1 1 43.337 43.337 2 0.0001989 12626 TMT1-2 129.28 121.71 448.95 709.85 407.17 442.77 505.79 700.85 424 702 436 436 526 671 4 4 4 4 4 4 148800 415 690 420 630;631;632 815;816;817;818 816 4 AEDGENYDIK Unmodified 1152.4935 0.49349744 265 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 0 2 0 1 43.283 43.283 2 1.6134E-05 12263 TMT1-1 118.4 74.699 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 416 265 421 633 819 819 1 AEDGENYDIKK Unmodified 1280.5885 0.58846046 265 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 1 4 0 2 40.495 40.495 3;4 0.00063977 10517 TMT1-3 89.548 65.459 524.13 852.04 636.26 589.53 402.87 821.05 496 844 662 581 438 781 2 2 2 2 2 2 52157 417 265 422 634;635 820;821 821 2 AEDGHAVAK Unmodified 896.43519 0.4351947 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 3 0 1 26.253 26.253 3 0.0087135 5848 TMT1-2 68.016 50.991 273.52 210.19 198.24 166.56 220.77 140.81 257 218 203 167 223 138 1 1 1 1 1 1 11265 418 1577 423 636 822 822 1 AEDGSVIDYELIDQDAR Unmodified 1907.8749 0.87486565 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 0 2.5 0.5 1 1 63.613 63.613 3 4.2876E-43 20350 TMT1-1 201.3 190.02 113.93 181.99 174.2 82.158 135.62 144.3 108 181 175 87 138 139 3 3 3 3 3 3 74113 419 534 424 637;638 823;824;825 824 3 AEDKEWMPVTK Unmodified 1332.6384 0.63838754 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 1 6 0 1 50.4 50.4 3 0.028098 14307 TMT1-5 56.122 36.284 138.94 173.66 125.77 108.9 145.64 243.16 131 174 131 109 152 232 1 1 1 1 1 1 8046.2 420 727 425 639 826 826 1 AEDLPLR Unmodified 812.43922 0.43921744 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 3 0 1 43.267 43.267 2 0.022657 12634 TMT1-2 95.541 45.002 99.474 184.59 76.879 127.46 127.31 112.56 94 181 87 123 131 109 1 1 1 1 1 1 20556 421 2525 426 640 827 827 1 AEDLVGK Unmodified 730.38612 0.38611924 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 4 0 1 44.342 44.342 2 0.027324 12031 TMT1-3 91.906 63.394 290.75 354 246.26 252.99 355.03 440.79 274 355 259 251 365 423 1 1 1 1 1 1 20609 422 409 427 641 828 828 1 AEDNADTLALVFEAPNQEK Unmodified 2073.9855 0.98547873 663 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 0 4 0 1 71.434 71.434 4 1.4063E-05 22687 TMT1-3 75.608 67.007 68.473 116.89 114.64 78.88 91.862 82.659 65 116 116 80 94 80 1 1 1 1 1 1 9969.5 423 663 428 642 829 829 1 AEDSLLAAEEAAAK Unmodified 1387.6831 0.68308912 595 P09493-8 no no 0 0 0 0 0 2.5 0.5 1 1 59.791 59.791 3 5.148E-08 19118 TMT1-2 114.7 104.52 450.21 642.65 793.74 453.8 786.52 643.81 427 645 790 472 793 625 5 5 5 5 5 5 97473 424 595 429 643;644 830;831;832;833;834 834 5 AEDWLDCPALGPGWK Acetyl (Protein N-term) 1755.7927 0.79265635 2883 Q9UIS9-4;Q9UIS9-11;Q9UIS9-8;Q9UIS9-7;Q9UIS9-6;Q9UIS9-5;Q9UIS9-10;Q9UIS9-2;Q9UIS9;Q9UIS9-9;Q9UIS9-12 MBD1 Methyl-CpG-binding domain protein 1 yes no 0 1 0 0 0 5 0 1 86.983 86.983 2 0.00012011 28478 TMT1-4 49.5 33.247 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 425 2883 430 645 835 835 1 AEDYDVVK Unmodified 937.43928 0.43927702 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 2 0 1 45.45 45.45 2 0.0055633 13114 TMT1-1 117.04 66.158 123.39 106.12 91.92 62.836 145.19 104.59 116 109 94 65 145 102 1 1 1 1 1 1 9727.2 426 251 431 646 836 836 1 AEEDEILNR Unmodified 1087.5146 0.51456723 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 2 0 1 42.105 42.105 2 8.9154E-50 11840 TMT1-1 234.82 134.07 292.41 449.63 246.93 327.66 334.57 418.98 276 445 268 319 348 402 2 2 2 2 2 2 75008 427 920 432 647 837;838 838 2 AEEDVEPECIMEK Unmodified 1577.6589 0.65892456 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 2 0 1 55.711 55.711 3 0.028003 17215 TMT1-1 47.606 34.774 53.882 72.706 79.695 50.077 48.714 67.9 51 73 80 51 51 65 1 1 1 1 1 1 28473 428 2887 433 648 839 839 1 AEEEFNK Unmodified 865.38176 0.38176214 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 2.5 0.5 1 1 39.747 39.747 2 0.0083387 11192 TMT1-2 117.02 33.405 1121 1544.1 1445.5 1147.5 1180 1689 1060 1545 1474 1149 1234 1616 4 4 4 4 4 4 181430 429 2849 434 649;650 840;841;842;843 843 4 AEEEIQK Unmodified 845.41306 0.41306227 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 2 0 1 37.069 37.069 3 0.0057987 9806 TMT1-1 90.706 40.167 115.72 145.06 85 166.6 171.08 95.322 109 145 94 160 174 94 1 1 1 1 1 1 10003 430 2753 435 651 844 844 1 AEEEQAGSAPGAGSTATK Unmodified 1660.754 0.75402223 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 2 0 1 34.578 34.578 3 4.6652E-14 8818 TMT1-1 117.33 93.044 46.681 57.893 40.175 83.598 76.987 83.083 44 58 44 80 80 80 1 1 1 1 1 1 12760 431 2309 436 652 845 845 1 AEEFSEAQDMYYLETSAK Unmodified 2110.9041 0.90411687 1873 Q15771 RAB30 Ras-related protein Rab-30 yes yes 0 0 0 0 0 3 0 1 68.67 68.67 3 0.00042518 22590 TMT1-2 52.644 44.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 432 1873 437 653 846 846 1 AEEGIAAGGVMDVNTALQEVLK Acetyl (N-term) 2256.1308 0.13076276 884 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 0 0 0 4 0 1 96.054 96.054 3 6.3713E-16 31104 TMT1-3 61.181 47.309 18.039 20.855 16.287 17.163 23.785 15.458 17 21 17 17 24 15 2 2 2 2 2 1 7975.8 433 884 438 654 847;848 847 2 AEEILEK Unmodified 830.43855 0.43854874 1459 P62913-2;P62913 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 0 3.5 0.5 1 1 49.106 49.106 2 0.0088226 14927 TMT1-2 114.93 32.261 734.63 1298.7 945.52 769.86 1051.2 1377.1 696 1282 981 774 1084 1320 3 3 3 3 3 3 77334 434 1459 439 655;656 849;850;851 849 3 AEELIENEEPVVLTDTNLVYPALK Unmodified 2698.3953 0.39529353 2766 Q9NWT6 HIF1AN Hypoxia-inducible factor 1-alpha inhibitor yes yes 0 0 0 0 0 4 0 1 83.055 83.055 4 1.2726E-06 27171 TMT1-3 68.88 55.823 14.632 54.01 19.814 15.177 43.502 53.125 14 52 22 15 44 51 2 2 2 1 2 2 2429.3 435 2766 440 657 852;853 852 2 AEELLAEEK Unmodified 1030.5183 0.51825563 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 2.5 0.5 1 1 52.676 52.676 2;3 4.3673E-06 16028 TMT1-1 163.32 70.88 254.52 243.69 116.73 180.12 164.89 257.53 239 247 130 174 174 246 2 2 2 2 2 2 20829 436 68 441 658;659 854;855 854 2 AEELLLK Unmodified 814.48002 0.48001963 1317 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 yes yes 0 0 0 0 0 5 0 1 57.097 57.097 2 0.0291 16779 TMT1-4 91.065 0 77.278 78.064 110.4 55.351 77.772 97.985 73 80 109 58 80 94 1 1 1 1 1 1 5858.2 437 1317 442 660 856 856 1 AEEQPQVELFVK Acetyl (Protein N-term) 1457.7402 0.74021007 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 1 0 0 0 3 0.816 1 1 1 72.175 72.175 3 0.00011565 23956 TMT1-2 88.441 53.554 916.98 1143.8 1268.2 903.64 1109.6 1416 867 1151 1277 915 1147 1358 7 6 7 7 7 7 232790 438 59 443 661;662;663 857;858;859;860;861;862;863 860 7 AEESTAIIAVVQK Unmodified 1357.7453 0.74529545 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 5.5 0.5 1 1 59.771 59.771 2;3 8.9516E-37 17863 TMT1-4 212.72 161.28 217.47 405.59 256.2 284.46 277.56 339.6 206 399 272 279 289 326 2 2 2 2 2 2 16006 439 161 444 664;665 864;865 864 2 AEEVVVVAK Acetyl (Protein N-term) 984.54916 0.54916182 742 P16333 NCK1 Cytoplasmic protein NCK1 yes yes 0 1 0 0 0 2 0 1 60.289 60.289 2 0.00033031 18998 TMT1-1 54.408 32.26 69.021 79.559 54.27 75.522 54.873 67.724 65 80 58 73 58 65 2 2 2 2 2 2 10297 440 742 445 666 866;867 867 2 AEEWGVQYVETSAK Unmodified 1595.7468 0.74675201 650 P11234;P11234-2;P11234-3 RALB Ras-related protein Ral-B yes no 0 0 0 0 0 5 0 1 59.968 59.968 3 0.00033762 17902 TMT1-4 59.68 41.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 441 650 446 667 868 868 1 AEEYEFLTPVEEAPK Unmodified 1750.8301 0.83014729 1268 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 0 0 0 2.83 0.687 2 3 1 65.9 65.9 2;3;4 2.1216E-17 21432 TMT1-2 153.63 132 811.73 1414 1055.1 1012.8 1269.1 1224.9 769 1397 1099 1006 1298 1183 10 10 10 10 10 10 390360 442 1268 447 668;669;670;671;672;673 869;870;871;872;873;874;875;876;877;878 874 10 AEFAEVSK Unmodified 879.4338 0.43379771 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 3.33 1.7 1 1 1 46.44 46.44 2;3 0.0020101 12776 TMT1-3 99.305 76.475 1682.4 3000.1 2340.2 1724.3 2546 2809.8 1595 2963 2408 1749 2602 2704 4 4 4 4 4 4 454480 + 443 28 448 674;675;676 879;880;881;882 880 4 AEFFADVVPAVR Unmodified 1319.6874 0.68738664 2871 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 0 0 7 0 1 69.507 69.507 2 0.00016763 21221 TMT1-6 81.263 34.838 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 444 2871 449 677 883 883 1 AEFFQHLIEDR Unmodified 1403.6834 0.68336389 358 O95487-2;O95487;O95487-3 SEC24B Protein transport protein Sec24B yes no 0 0 0 0 0 6 0 1 64.069 64.069 3 0.038686 19701 TMT1-5 46.481 14.473 61.365 79.669 78.574 65.031 70.768 75.799 58 80 80 65 73 73 1 1 1 1 1 1 5912.7 445 358 450 678 884 884 1 AEFNYSVGFK Unmodified 1160.5502 0.55022446 2099 Q7Z5R6;Q7Z5R6-2 APBB1IP Amyloid beta A4 precursor protein-binding family B member 1-interacting protein yes no 0 0 0 0 0 7 0 1 59.438 59.438 2 9.3853E-05 17220 TMT1-6 140.07 90.657 68.541 133.27 89.432 88.327 76.256 98.028 65 131 94 87 80 94 1 1 1 1 1 1 15020 446 2099 451 679 885 885 1 AEFTVETR Unmodified 951.46616 0.46616048 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.2 1.72 1 1 1 1 1 41.455 41.455 2 6.3072E-13 10709 TMT1-3 190.52 124.71 5499.7 7231.3 6946.3 5234.7 6564.2 7542.3 5198 7254 7062 5281 6753 7251 8 8 8 8 8 8 1216700 447 831 452 680;681;682;683;684 886;887;888;889;890;891;892;893;894 892 9 AEFVEVTK Unmodified 921.48075 0.48074791 29 CON__P02769 yes yes 0 0 0 0 0 5 0 1 51.165 51.165 2 0.0045975 14457 TMT1-4 123.92 89.109 169.8 94.361 1499.2 58.827 141.23 225.16 167 123 1394 138 145 215 1 1 1 1 1 1 30479 + 448 29 453 685 895 895 1 AEFWLDLQPQAK Unmodified 1444.7351 0.73506511 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 7 0 1 72.577 72.577 3 0.0003454 22482 TMT1-6 88.441 66.682 93.2 107.78 114.43 93.094 150.36 126.83 88 109 116 94 152 123 2 2 2 2 2 2 23377 449 1596 454 686 896;897 897 2 AEGDVAALNR Unmodified 1014.5094 0.50942227 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 0 2.25 0.829 1 1 2 37.855 37.855 2 2.6972E-29 10185 TMT1-1 215.42 147.04 888.43 854.96 901.58 684.87 1001.9 1069.4 837 874 913 693 1023 1030 3 3 3 3 3 3 321550 450 1486 455 687;688;689;690 898;899;900;901;902 900 5 AEGDVAALNRR Unmodified 1170.6105 0.6105333 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 3 0 1 32.332 32.332 3 1.8596E-05 8327 TMT1-2 115.29 75.438 326.99 409.11 240.55 351.47 134.61 361.8 308 409 261 337 156 343 1 1 1 1 1 1 115750 451 1486 456 691 903 903 1 AEGGQCPSLLFDLR Unmodified 1561.7559 0.75587691 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6 0.707 1 2 1 64.94 64.94 2;3 7.3664E-35 20038 TMT1-5 200.76 175.29 674.75 858.17 743.7 654.18 751.36 912.38 637 861 765 652 777 876 6 6 6 6 6 6 484940 452 565 457 692;693;694;695 904;905;906;907;908;909;910 908 7 AEGGQCPSLLFDLRDETR Unmodified 2062.9742 0.97420254 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 4.33 0.471 2 1 58.34 58.34 3 5.6892E-28 17263 TMT1-4 166.9 153.83 655.13 860.81 792.23 632.08 668.35 1287.8 619 863 809 633 709 1226 4 4 4 4 4 4 246700 453 565 458 696;697;698 911;912;913;914;915 915 5 AEGLECTK Unmodified 906.41168 0.41168206 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 4 0 1 37.792 37.792 2 0.006986 9415 TMT1-3 103.74 4.6004 301.07 767.3 685.8 515.57 807.94 790.3 288 751 699 523 821 763 1 1 1 1 1 1 129650 454 471 459 699 916 916 1 AEGLGDGYR Unmodified 936.43011 0.43010932 2565 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 0 2 0 1 36.701 36.701 2 0.029365 9665 TMT1-1 74.269 45.167 115.65 106.01 129.95 108.75 140.7 174.01 109 109 131 109 145 167 1 1 1 1 1 1 13592 455 2565 460 700 917 917 1 AEGPDVAVDLPK Unmodified 1209.6241 0.62411768 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 55.297 55.297 3 0.0017202 16314 TMT1-3 75.045 42.982 122.95 159.94 120.12 61.725 114.88 105.45 116 160 123 65 116 102 1 1 1 1 1 1 31308 456 1632 461 701 918 918 1 AEGPEVDVNLPK Unmodified 1266.6456 0.6455814 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3 0.816 1 1 1 54.384 54.384 3 6.8579E-08 15873 TMT1-3 124.46 100.6 698.29 1086.3 560.55 642.36 681.92 939.94 659 1074 608 630 711 900 4 4 4 4 4 4 218440 457 1632 462 702;703;704 919;920;921;922 921 4 AEGPGLSR Unmodified 785.40317 0.40316629 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3 0.816 1 1 1 29.541 29.541 2 9.6927E-08 7162 TMT1-2 171.38 77.378 1737.6 1868.7 1949.2 1548.8 2074.7 2056.8 1639 1897 1977 1559 2119 1985 5 5 5 5 5 5 368780 458 831 463 705;706;707 923;924;925;926;927 926 5 AEGSDVANAVLDGADCIMLSGETAK Oxidation (M) 2509.1312 0.13123305 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 0 4 0 1 70.669 70.669 4 0.00192 22461 TMT1-3 41.763 23.668 45.464 96.421 31.671 28.432 73.257 52.276 43 94 36 29 73 51 1 1 1 1 1 1 17942 459 706;707 464 708 928 928 131 1 AEGSDVANAVLDGADCIMLSGETAK Unmodified 2493.1363 0.13631842 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 4.33 0.471 2 1 80.011 80.011 4;5 1.1871E-30 26061 TMT1-3 133.48 120.68 711.27 961.55 650.14 668 603.85 1199.1 671 959 685 657 646 1141 7 7 7 7 7 7 181660 460 706;707 464 709;710;711 929;930;931;932;933;934;935 930 7 AEGTFPGK Unmodified 805.39702 0.39701828 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 0 6 0 1 41.444 41.444 2 0.0013021 10721 TMT1-5 143.12 75.14 171.1 247.11 248.72 136.84 362.87 215.64 162 247 250 145 360 212 1 1 1 1 1 1 34081 461 712 465 712 936 936 1 AEGTFPGKI Unmodified 918.48108 0.48108226 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 1 6 0 1 50.138 50.138 2 0.0025052 14104 TMT1-5 114.5 66.649 346.39 646.92 384.52 440.48 466.82 437.6 328 636 411 432 480 423 2 2 2 2 2 2 32565 462 712 466 713 937;938 937 2 AEGYEVAHGGR Unmodified 1144.5261 0.52613497 1281 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 0 3 0 1 26.505 26.505 3 0.0048987 5973 TMT1-2 68.548 53.405 69.228 63.945 32.746 45.363 41.308 76.639 65 65 36 44 44 73 1 1 1 1 1 1 3697 463 1281 467 714 939 939 1 AEHDSILAEK Unmodified 1111.551 0.55095274 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3.5 0.5 1 1 38.637 38.637 3 0.0059451 10894 TMT1-2 70.412 40.644 285.15 354.77 286.18 303.87 254.41 378.63 269 356 298 298 269 362 3 3 3 3 3 3 21720 464 902 468 715;716 940;941;942 941 3 AEHIPAGK Unmodified 821.43955 0.43955179 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 5 0 1 30.981 30.981 3 0.020995 6410 TMT1-4 62.2 26.976 92.285 132.04 67.287 74.343 76.349 114.02 87 131 73 73 80 109 1 1 1 1 1 1 36500 465 2411 469 717 943 943 1 AEHQQDSEDLFKK Unmodified 1573.7372 0.73724996 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 1 4 0 1 40.138 40.138 4 0.0082656 10343 TMT1-3 56.648 46.163 138.57 216.89 151.14 185.68 167.49 174.31 131 215 160 181 174 168 1 1 1 1 1 1 19667 466 2859 470 718 944 944 1 AEHQVGEDGFLLK Unmodified 1441.7201 0.72014333 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 4 0 1 50.085 50.085 3 0.0013345 14296 TMT1-3 73.887 52.934 84.733 132.44 73.87 96.913 75.861 98.039 80 131 80 94 80 94 1 1 1 1 1 1 7850.5 467 1093;1253 471 719 945 945 1 AEIEYLEK Unmodified 993.50188 0.50187728 697 P14151;P14151-2 SELL L-selectin yes no 0 0 0 0 0 4 0 1 54.571 54.571 2 0.004794 16071 TMT1-3 122.52 45.617 115.08 208.04 138.99 108.5 125.1 202.17 109 205 145 109 131 193 1 1 1 1 1 1 12519 468 697 472 720 946 946 1 AEIGIAMGSGTAVAK Unmodified 1374.7177 0.71770049 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 7 0 1 55.966 55.966 3 0.00064877 15884 TMT1-6 72.615 43.809 231.36 283.4 189.73 190.8 237.48 230.94 218 284 200 189 243 223 1 1 1 1 1 1 13839 469 2344;748 473 721 947 947 1 AEIIADK Unmodified 758.41742 0.41741937 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 0 4 0 1 45.364 45.364 2 0.0088226 12450 TMT1-3 114.93 8.985 407.15 563.72 342.76 414.4 358.39 675.21 384 561 367 404 383 643 1 1 1 1 1 1 36470 470 1675 474 722 948 948 1 AEIITVSDGR Unmodified 1059.556 0.55603812 2515 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 0 4 0 1 45.785 45.785 2 6.7539E-05 12611 TMT1-3 108.81 67.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471 2515 475 723 949 949 1 AEISCTDNQDGTCSVSYLPVLPGDYSILVK Unmodified 3300.553 0.55300951 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.57 1.92 1 4 2 84.403 84.403 4;5 2.7314E-26 27296 TMT1-5 104.51 102.83 534.82 696.88 772.99 642.71 745.23 862.45 506 701 782 643 769 829 9 9 9 9 9 9 343180 472 831 476 724;725;726;727;728;729;730 950;951;952;953;954;955;956;957;958 951 9 AEISELPSIVQDLANGNITWADVEAR Unmodified 2810.4087 0.40865218 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 6 0 1 94.963 94.963 4 0.02912 31365 TMT1-5 29.135 16.457 7.3262 30.272 5.4068 7.0498 14.832 15.567 7 29 7 7 15 15 1 1 1 1 1 1 1429.3 473 1084 477 731 959 959 1 AEISFEDR Unmodified 965.44543 0.44542503 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.5 0.5 1 1 44.755 44.755 2 2.1248E-26 12947 TMT1-1 205.13 101.22 2532.2 3182.7 3454.7 2424.5 3742.8 2781 2394 3206 3481 2471 3776 2709 5 5 5 5 5 5 636330 474 831 478 732;733 960;961;962;963;964 961 5 AEISFEDRK Unmodified 1093.5404 0.54038805 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.6 2.06 1 1 1 1 1 41.412 41.412 3 1.6032E-05 10882 TMT1-3 152.97 96.244 6823.4 9410.5 8409.4 6177.2 7896.6 9942.2 6450 9409 8580 6246 8147 9538 8 8 8 8 8 8 1165300 475 831 479 734;735;736;737;738 965;966;967;968;969;970;971;972 967 8 AEITLVATKPEK Unmodified 1298.7446 0.74456717 2838 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 1 7 0 1 50.424 50.424 3 0.00091104 13684 TMT1-6 84.734 55.928 115.99 90.776 84.857 72.866 99.195 120.83 109 94 87 73 102 116 1 1 1 1 1 1 7432.4 476 2838 480 739 973 973 1 AEKDEPGAWEETFK Unmodified 1635.7417 0.74166663 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 4.5 0.5 1 1 53.441 53.441 3 1.484E-13 15292 TMT1-4 121.82 89.428 390.97 584.19 519.83 397.01 547.85 572.8 370 582 531 401 560 552 2 2 2 2 2 2 69209 477 1792 481 740;741 974;975;976 976 3 AEKDNAEIR Unmodified 1044.52 0.51998696 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 2.5 0.5 1 1 28.934 28.934 3 0.02202 6827 TMT1-2 64.103 26.759 276.44 389.55 277.64 255.33 305.62 262.04 261 388 290 254 312 254 2 2 2 2 2 2 31660 478 2496 482 742;743 977;978 978 2 AEKGFLLLASLR Unmodified 1316.7816 0.78162138 554;32 CON__Q28194;P07996 THBS1 Thrombospondin-1 no no 0 0 0 0 1 9 0 1 67.199 67.199 3 0.00059212 18552 TMT1-8 81.632 45.107 357.12 279.93 335.89 227.74 193.15 436.88 336 291 337 230 209 415 1 1 1 1 1 1 34766 + 479 32;554 483 744 979 979 1 AELAESR Unmodified 774.38718 0.38718187 519;521 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 2.5 0.5 1 1 29.746 29.746 2 7.6609E-08 6957 TMT1-1 172.03 29.012 1757.9 2666.5 2196 1806.1 2082.1 2684.5 1663 2652 2260 1808 2158 2574 2 2 2 2 2 2 350030 480 519;521 484 745;746 980;981 980 2 AELATEEFLPVTPILEGFVILR Unmodified 2456.3567 0.3566636 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 6.5 0.5 1 1 102.5 102.5 3 2.2926E-17 33232 TMT1-6 105.91 81.368 11.619 26.635 14.703 11.365 17.77 15.602 11 26 15 11 18 15 2 3 2 2 3 2 6316.7 481 1683 485 747;748 982;983;984 984 3 AELDDTPMR Unmodified 1046.4703 0.47025958 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 2 0 1 42.148 42.148 2 0.0034721 11813 TMT1-1 70.856 39.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 857 486 749 985 985 1 AELDEVNK Unmodified 916.45018 0.45017606 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2.5 0.5 1 1 43.515 43.515 2 0.0013136 12415 TMT1-1 143.01 103.47 207.69 291.34 192.27 198.57 223.15 302.77 196 290 203 196 232 290 2 2 2 2 2 2 21050 483 1577 487 750;751 986;987 986 2 AELEIQKDALEPGQR Unmodified 1695.8792 0.87916317 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 1 4 0 1 50.672 50.672 3 0.00017401 14512 TMT1-3 80.738 52.507 207.73 275.26 199.39 230.42 192.39 272.74 196 275 210 225 203 261 2 2 2 2 2 2 31289 484 541 488 752 988;989 988 2 AELELELGR Unmodified 1028.5502 0.55022446 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 56.115 56.115 2 0.017745 17581 TMT1-2 78.934 15.261 92.2 131.8 81.833 88.179 108.19 82.193 87 131 87 87 110 80 2 2 2 2 2 2 20491 485 1833 489 753;754 990;991 991 2 AELGALPDDFIDSLEK Unmodified 1731.8567 0.85669639 2579 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 0 0 4 0 1 82.436 82.436 3 0.00099943 26960 TMT1-3 51.606 32.774 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 486 2579 490 755 992 992 1 AELGSQEGYVPK Unmodified 1276.6299 0.62993134 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 4 0 1 47.472 47.472 3 1.6397E-09 13250 TMT1-3 149.38 111.83 184.36 227.88 200.1 159.5 183.87 280.44 174 229 205 160 192 268 1 1 1 1 1 1 38886 487 300 491 756 993 993 1 AELNEFLTR Unmodified 1091.5611 0.56112349 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 5 0 1 57.544 57.544 2 0.00067332 16910 TMT1-4 131.22 72.41 271.6 499.51 275.37 207.41 245.62 337.31 257 491 292 209 255 323 1 1 1 1 1 1 102000 488 861 492 757 994 994 1 AELQEGAR Unmodified 872.43519 0.4351947 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 2 0 1 29.369 29.369 2 0.025306 6743 TMT1-1 85.161 56.987 53.801 80.034 87.203 41.701 63.464 76.007 51 80 87 44 65 73 1 1 1 1 1 1 8489.7 489 431 493 758 995 995 1 AELRDDPIISTHLAK Unmodified 1677.905 0.90498399 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 1 5 0 1 48.241 48.241 4 0.00017934 13301 TMT1-4 78.69 57.737 146.01 180.57 193.39 159.6 199.34 164.87 138 182 196 160 203 160 1 1 1 1 1 1 17760 490 54 496 759 996 996 1 AELSEEALLSVLPTIR Acetyl (Protein N-term) 1781.9775 0.97748023 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 1 0 0 0 4.5 0.5 1 1 99.704 99.704 2 1.3006E-67 31483 TMT1-3 99.5 83.61 2.136 8.3248 2.5811 6.3867 5.0418 4.1201 2 8 3 6 5 4 1 3 2 2 2 2 5581.9 491 1122 497 760;761 997;998;999 998 3 AELSEGQVR Unmodified 987.49852 0.49852324 595;593;592 P09493-2;P09493-3;P09493-10;P09493-8 no no 0 0 0 0 0 2.5 1.12 1 1 1 1 34.082 34.082 2 3.55E-20 8709 TMT1-1 199.8 102.77 2132.2 2528 2162.1 1837.2 2221.5 2513.1 2011 2545 2224 1837 2287 2417 6 6 6 6 6 6 417670 492 592;593;595 498 762;763;764;765 1000;1001;1002;1003;1004;1005 1001 6 AELTKVEEEIVTLR Unmodified 1628.8985 0.89850163 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 1 4 0 1 68.662 68.662 3 0.0049187 21578 TMT1-3 64.394 42.521 61.368 87.234 71.543 42.635 63.421 76.008 58 87 73 44 65 73 1 1 1 1 1 1 8592.5 493 172 499 766 1006 1006 1 AELTSQESQISTYEEELAK Unmodified 2155.0168 0.016838441 1098 P42566;P42566-2 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 0 0 0 0 2.5 0.5 1 1 65.822 65.822 3;4 1.0562E-17 21073 TMT1-1 124.63 107.35 93.284 100.46 106.52 110.49 122.08 74.335 88 102 109 109 124 73 3 3 3 3 3 3 10457 494 1098 500 767;768 1007;1008;1009 1007 3 AEMDQILHGLDK Unmodified 1368.6708 0.6707503 473 P04424-3;P04424-2;P04424 ASL Argininosuccinate lyase yes no 0 0 0 0 0 5 0 1 62.186 62.186 3 0.0026878 18780 TMT1-4 70.889 43.841 108.27 114.45 100.13 63.356 91.513 113.58 102 116 102 65 94 109 1 1 1 1 1 1 12228 495 473 501 769 1010 1010 1 AEMELGLR Unmodified 917.46405 0.46405199 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 4 0 1 48.954 48.954 2 0.0058275 13821 TMT1-3 113.5 42.126 137.89 279.76 211.72 149.91 191.7 248.24 131 275 218 152 198 238 1 1 1 1 1 1 33277 496 787 502 770 1011 1011 1 AEMEVLLASK Unmodified 1089.574 0.57399637 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 63.708 63.708 3 0.00077944 19543 TMT1-5 94.297 76.432 30.495 74.931 40.986 44.29 72.271 59.766 29 73 44 44 73 58 1 1 1 1 1 1 6474.6 497 1833 503 771 1012 1012 1 AEMVVPDFSELFK Unmodified 1510.7378 0.73776723 2693 Q9HD20-2;Q9HD20 ATP13A1 Manganese-transporting ATPase 13A1 yes no 0 0 0 0 0 7 0 1 85.601 85.601 3 0.0001069 27491 TMT1-6 70.412 47.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 498 2693 504 772 1013 1013 1 AENFFILR Unmodified 1008.5393 0.53926584 1351 P59998;P59998-3;P59998-2;P59998-4 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 7.5 0.5 1 1 63.809 63.809 2 2.0826E-05 19085 TMT1-7 164.53 89.284 799.5 946.86 982.12 754.88 918.14 1007.8 755 956 995 760 944 970 1 1 1 1 1 1 237490 499 1351 505 773;774 1014;1015 1015 2 AENLAAQLSFYR Unmodified 1381.699 0.69901396 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 7 0 1 62.695 62.695 2 2.4106E-08 18523 TMT1-6 140 102.66 61.644 49.145 57.56 43.484 62.613 98.417 58 51 58 44 65 94 1 1 1 1 1 1 14257 500 2779 506 775 1016 1016 1 AENNPWVTPIADQFQLGVSHVFEYIR Unmodified 3029.5036 0.50355562 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 8 0.816 1 1 1 88.872 88.872 3;4 8.2176E-29 28763 TMT1-7 121.94 119.96 93.208 125.07 98.4 89.566 67.823 98.269 88 125 102 88 72 94 5 5 5 4 5 5 109960 501 1851 507 776;777;778 1017;1018;1019;1020;1021 1019 5 AENNSEVGASGYGVPGPTWDR Unmodified 2161.9665 0.96647463 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 3 0 1 53.871 53.871 3 2.1192E-08 16810 TMT1-2 91.091 81.837 15.855 21.975 21.757 14.56 28.632 30.097 15 22 22 15 29 29 1 1 1 1 1 1 6008.1 502 1619 508 779 1022 1022 1 AENQVLAMR Unmodified 1030.523 0.52296385 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 4 0 1 41.859 41.859 2 0.033413 11024 TMT1-3 72.643 39.714 153.77 216.36 121.69 141.23 125.21 368.46 145 215 131 138 138 349 1 1 1 1 1 1 27289 503 1244 509 780 1023 1023 1 AENSSLNLIGK Unmodified 1144.6088 0.60880197 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 6 0 1 52.945 52.945 3 0.0027327 15309 TMT1-5 75.819 50.602 153.73 203.3 139.13 107.48 178.71 165.46 145 203 145 109 181 160 1 1 1 1 1 1 26001 504 1129 510 781 1024 1024 1 AENYDIPSADR Unmodified 1249.5575 0.55749468 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 2 0 1 41.352 41.352 2 1.7715E-06 11480 TMT1-1 136.81 118.03 222.99 261.93 171.51 168.28 214.33 234.8 210 263 181 167 220 226 2 2 2 2 2 2 37841 505 845 511 782 1025;1026 1025 2 AEPASVAAESLAGSR Acetyl (N-term) 1456.7158 0.71578623 2715 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 1 0 0 0 0 2 0 1 57.937 57.937 2 0.00029402 18053 TMT1-1 72.731 42.921 15.482 43.604 66.032 36.006 26.583 61.069 15 43 65 37 29 58 1 1 1 1 1 1 5592.9 506 2715 512 783 1027 1027 1 AEPDESNAR Unmodified 987.42575 0.42575222 1377 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 0 1 0 1 22.201 22.201 2 0.0024819 4456 TMT 1-phospho 75.825 55.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 507 1377 513 784 1028 1028 1 AEPEDHYFLLTEPPLNTPENR Unmodified 2481.1812 0.18121843 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 2.67 1.25 1 1 1 62.258 62.258 3 1.1898E-45 20164 TMT1-2 186.45 167.57 270.26 292.51 315.7 261.11 342.25 345.21 255 297 320 262 350 333 6 6 6 6 6 6 227850 508 1379 514 785;786;787 1029;1030;1031;1032;1033;1034;1035 1031 7 AEPEKTEGAAEAK Unmodified 1329.6412 0.64122431 1513 P80723 BASP1 Brain acid soluble protein 1 yes yes 0 0 0 0 1 3 0 1 33.808 33.808 3 0.00052722 8862 TMT1-2 84.734 29.282 99.506 114.53 130.92 77.362 120.98 120.2 94 116 131 80 123 116 1 1 1 1 1 1 7148 509 1513 515 788 1036 1036 1 AEPLETFPFDQSK Unmodified 1507.7195 0.71947463 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 5 0 1 65.848 65.848 3 0.00027205 20162 TMT1-4 85.554 68.668 183.59 330.44 242.2 266.7 278.11 377.96 174 326 254 262 290 362 2 2 2 2 2 2 23957 510 3063 516 789 1037;1038 1037 2 AEPLNSVAH Unmodified 936.46649 0.46649483 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 0 4.5 1.5 1 1 37.222 37.222 2 0.0002542 9007 TMT1-5 112.17 94.786 68.578 134.45 82.188 79.328 170.84 218.99 65 132 87 80 174 210 1 1 1 1 1 1 14738 511 368 517 790;791 1039;1040 1040 2 AEPPQCTSLAWSADGQTLFAGYTDNLVR Unmodified 3067.4345 0.43454936 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 6 0 2 78.316 78.316 3;4 3.6153E-08 25257 TMT1-5 68.444 56.92 30.429 81.767 77.842 57.841 48.577 61.508 29 80 79 58 51 59 2 3 3 3 3 3 23030 512 1478 518 792;793 1041;1042;1043 1041 3 AEPTNPSK Unmodified 842.4134 0.41339662 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 4 0 1 30.142 30.142 2 0.002119 6407 TMT1-3 138.4 80.932 61.599 49.021 65.182 42.561 87.522 44.407 58 51 65 44 87 44 1 1 1 1 1 1 5723.3 513 2914 519 794 1044 1044 1 AEPVEVVAPR Unmodified 1065.5819 0.58185893 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 2 0 1 43.682 43.682 2 0.00083413 12413 TMT1-1 105.4 62.482 38.105 43.392 51.137 28.04 32.409 115.27 36 44 51 29 36 109 1 1 1 1 1 1 4762.7 514 606 520 795 1045 1045 1 AEQAEADKK Unmodified 988.48254 0.48253882 595;1487;593;551;552 P09493-3;P09493-10;P09493-8;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 4 0 1 29.74 29.74 3 0.00067987 6275 TMT1-3 104.79 6.4028 453.79 200.21 386.8 225.94 418.17 191.67 426 223 380 235 416 191 1 1 1 1 1 1 13862 + 515 593;595;1487;551;552 521 796 1046 1046 1 AEQDITTLEQSISR Unmodified 1589.7897 0.78967946 3041 Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5;Q9Y608-3 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 0 2.5 0.5 1 1 63.16 63.16 3 1.8637E-27 20432 TMT1-2 181.71 156.53 100.67 132.33 100.16 63.709 130.75 97.539 95 130 103 66 131 95 3 2 3 3 3 3 40965 516 3041 522 797;798 1047;1048;1049 1049 3 AEQEEEFISNTLFK Unmodified 1683.7992 0.79918151 1885 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 0 0 4 0 1 72.788 72.788 3 2.8944E-10 23269 TMT1-3 119.32 91.98 54.135 57.222 50.252 27.476 65.181 45.044 51 58 51 29 65 44 1 1 1 1 1 1 9684.7 517 1885 523 799 1050 1050 1 AEQENQELPDEGTLEETLTNETR Unmodified 2645.194 0.19402754 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 2 0 1 64.74 64.74 3 1.3787E-06 20674 TMT1-1 74.579 67.781 15.668 21.455 53.623 4.3258 6.8738 7.2659 15 22 51 7 7 7 1 1 1 1 1 1 4334.4 518 1229 524 800 1051 1051 1 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK Acetyl (N-term) 3605.6758 0.6757785 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 1 0 0 0 1 2.8 0.748 2 2 1 62.243 62.243 4;5 1.2212E-13 19693 TMT1-1 63.925 57.095 460.15 711.68 506.91 507.66 574.88 673.3 435 706 531 502 594 647 5 5 5 5 5 5 355370 519 1268 525 801;802;803;804;805 1052;1053;1054;1055;1056 1052 5 AEQINQAAGEASAVLAK Unmodified 1669.8635 0.8635131 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 6 0 1 61.266 61.266 3 2.2004E-07 18595 TMT1-5 94.639 75.807 92.397 92.414 82.038 136.62 89.207 82.734 87 94 87 131 94 80 1 1 1 1 1 1 10232 520 2890 526 806 1057 1057 1 AEQQEELAASFSSLLTYGLSLIR Unmodified 2525.3013 0.30133356 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 110.37 110.37 3 4.854E-08 34216 TMT1-8 71.905 59.704 0 4.256 0 4.372 0 0 0 4 0 4 0 0 0 1 0 1 0 0 998.1 521 2066 527 807 1058 1058 1 AEQSLHDLQER Unmodified 1324.6371 0.63714198 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 3.5 1.5 1 1 35.726 35.726 3 0.00046985 8212 TMT1-4 92.906 66.392 286.85 274.42 248.62 234.84 266.55 208.79 270 280 256 233 272 203 2 2 2 2 2 2 47068 522 1724 528 808;809 1059;1060 1060 2 AESAALHAGLR Unmodified 1094.5833 0.58325592 274 O75410-10;O75410-5;O75410-4;O75410-6;O75410-3;O75410-7;O75410-9;O75410;O75410-2;O75410-8 TACC1 Transforming acidic coiled-coil-containing protein 1 yes no 0 0 0 0 0 5 0 1 33.824 33.824 3 2.9064E-06 7555 TMT1-4 122.69 76.284 61.414 48.507 96.655 41.137 63.49 76.006 58 51 94 44 65 73 1 1 1 1 1 1 5451.9 523 274 529 810 1061 1061 1 AESAPLPVSADDTPEVLNR Unmodified 1979.98 0.97999942 364 O95674 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 58.559 58.559 2;3 1.92E-14 18529 TMT1-2 96.734 66.184 54.109 64.702 48.398 59.025 78.923 59.576 51 65 51 58 80 58 2 2 2 2 2 2 13396 524 364 530 811;812 1062;1063;1064 1064 3 AESFFQTK Unmodified 956.46035 0.46034682 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 7 0 1 52.991 52.991 2 0.0035785 14672 TMT1-6 130.75 89.299 207.51 294.06 221.03 180.97 196.19 319.53 196 293 229 181 206 305 1 1 1 1 1 1 24729 525 692 531 813 1065 1065 1 AESLQQEVEALK Unmodified 1343.6933 0.69325988 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 4 0 1 63.338 63.338 3 1.6338E-05 19537 TMT1-3 105.65 91.622 77.395 93.499 77.685 64.547 99.321 128.28 73 94 80 65 102 123 1 1 1 1 1 1 16583 526 1762 532 814 1066 1066 1 AESLQQEVEALKER Unmodified 1628.837 0.836964 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 1 4 0 1 59.165 59.165 3 1.5721E-05 17886 TMT1-3 99.747 79.64 68.921 79.281 71.293 58.113 54.867 91.176 65 80 73 58 58 87 1 1 1 1 1 1 9544.5 527 1762 533 815 1067 1067 1 AESTFLFLVGQDDHNWK Unmodified 2005.9534 0.95339074 1195 P49753;Q86TX2;P49753-2 ACOT2;ACOT1 Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 1 yes no 0 0 0 0 0 7 0 2 72.324 72.324 3;4 3.3425E-25 22340 TMT1-6 153.2 127.34 108.55 85.008 78.039 64.502 100.61 90.937 102 88 80 65 102 88 2 2 2 2 2 2 16216 528 1195 534 816;817 1068;1069 1069 2 AESVVLEHR Unmodified 1038.5458 0.54580778 2562 Q9BWS9-3;Q9BWS9;Q9BWS9-2 CHID1 Chitinase domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 33.728 33.728 3 0.00031681 8816 TMT1-2 116.52 96.188 68.811 94.084 77.289 73.608 83.712 113.81 65 94 80 73 87 109 1 1 1 1 1 1 6862.4 529 2562 535 818 1070 1070 1 AETAANR Unmodified 731.35622 0.3562161 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;P35609-2 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 1 0 1 17.409 17.409 2 0.0058293 3173 TMT 1-phospho 80.462 50.621 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 530 672;195;1022 536 819 1071 1071 1 AETEEGPDVLR Unmodified 1214.5779 0.57789577 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 2 0 1 41.759 41.759 2 2.3903E-05 11663 TMT1-1 117.71 67.579 46.691 65.475 32.102 60.298 62.902 67.495 44 65 36 58 65 65 1 1 1 1 1 1 8318.4 531 1857 537 820 1072 1072 1 AETLSGLGDSGAAGAAALSSASSETGTR Acetyl (Protein N-term) 2536.1889 0.18888258 1853 Q15424-2;Q15424;Q15424-4;Q15424-3 SAFB Scaffold attachment factor B1 yes no 0 1 0 0 0 3 0 1 68.845 68.845 3 3.8431E-12 22642 TMT1-2 43.291 34.349 15.855 21.975 21.757 14.555 28.888 22.628 15 22 22 15 29 22 1 1 1 1 1 1 7839.8 532 1853 539 821 1073 1073 1 AETSEGSGSAPAVPEASASPK Unmodified 1928.8963 0.89632937 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 3 0 1 42.296 42.296 3 1.9737E-10 12237 TMT1-2 97.525 79.161 30.776 44.412 19.661 29.704 43.641 29.669 29 44 22 29 44 29 1 1 1 1 1 1 9744.6 533 1247 540 822 1074 1074 1 AETYDFLFK Acetyl (Protein N-term) 1174.5546 0.55464113 1369 P61018 RAB4B Ras-related protein Rab-4B yes yes 0 1 0 0 0 4 0 1 83.83 83.83 2 9.3561E-05 27502 TMT1-3 62.2 29.979 46.811 26.956 44.484 28.519 27.99 30.115 44 29 44 29 29 29 1 1 1 1 1 1 4248.3 534 1369 541 823 1075 1075 1 AEVAAAAAR Unmodified 828.44537 0.44536545 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 4 0 1 30.571 30.571 2 0.0021713 6616 TMT1-3 104.75 36.262 107.98 129.83 136.13 108.92 111.94 127.92 102 131 138 109 116 123 1 1 1 1 1 1 24568 535 1081 542 824 1076 1076 1 AEVAAEFLNDR Unmodified 1233.599 0.59896556 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 4 0 1 58.234 58.234 2 0.0076903 17496 TMT1-3 81.625 49.404 61.491 72.465 63.442 50.066 100.77 74.942 58 73 65 51 101 73 1 1 1 1 1 1 10353 536 2241 543 825 1077 1077 1 AEVAELLVHSGDFLVR Unmodified 1753.9363 0.93628412 532 P07332-3;P07332 FES Tyrosine-protein kinase Fes/Fps yes no 0 0 0 0 0 6 0 1 74.424 74.424 3 1.6462E-06 23758 TMT1-5 92.38 60.741 30.778 35.782 26.698 53.386 40.698 53.205 29 36 29 51 43 51 1 1 1 1 1 1 9046.2 537 532 544 826 1078 1078 1 AEVDAEKPGATDR Unmodified 1357.6474 0.64737232 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 1 3 0 1 34.347 34.347 3 0.00029287 9069 TMT1-2 74.649 28.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 538 2325 545 827 1079 1079 1 AEVDDVIQVR Unmodified 1142.5932 0.5931519 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 2.5 0.5 1 1 51.081 51.081 2 6.2184E-07 15453 TMT1-1 165.15 126.38 322.48 358.06 320.9 220.08 357.48 383.15 304 362 327 225 364 369 3 3 3 3 3 3 89425 + 539 666;31 546 828;829 1080;1081;1082 1081 3 AEVEETLK Acetyl (Protein N-term) 959.48114 0.48114184 2262 Q8TF09;Q9NP97;Q9NP97-2 DYNLRB2;DYNLRB1 Dynein light chain roadblock-type 2;Dynein light chain roadblock-type 1 yes no 0 1 0 0 0 2 0 1 55.105 55.105 2 0.0016346 16927 TMT1-1 44.447 16.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 540 2262 547 830 1083 1083 1 AEVEETLKR Acetyl (Protein N-term) 1115.5823 0.58225287 2262 Q8TF09;Q9NP97;Q9NP97-2 DYNLRB2;DYNLRB1 Dynein light chain roadblock-type 2;Dynein light chain roadblock-type 1 yes no 0 1 0 0 1 2 0 1 46.887 46.887 2 0.0086329 13734 TMT1-1 55.37 41.992 46.478 81.072 54.697 66.45 70.995 67.264 44 80 58 65 73 65 1 1 1 1 1 1 18532 541 2262 548 831 1084 1084 1 AEVELEYSR Unmodified 1094.5244 0.52440364 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 2 0 1 44.89 44.89 2 0.014497 12871 TMT1-1 82.749 41.301 38.289 35.27 27.026 45.847 33.716 53.404 36 36 29 44 36 51 1 1 1 1 1 1 4833.7 542 1530 549 832 1085 1085 1 AEVETISK Unmodified 875.46001 0.46001246 1344 P57764 GSDMD Gasdermin-D yes yes 0 0 0 0 0 4 0 1 41.779 41.779 2 2.6166E-05 11028 TMT1-3 131.06 49.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543 1344 550 833 1086 1086 1 AEVHPAGDTAK Unmodified 1094.5356 0.53563702 1798 Q14789-4;Q14789-3;Q14789;Q14789-2 GOLGB1 Golgin subfamily B member 1 yes no 0 0 0 0 0 4 0 1 28.395 28.395 3 0.014814 5806 TMT1-3 57.019 37.748 30.654 51.627 34.092 36.102 64.528 52.525 29 51 36 36 65 51 1 1 1 1 1 1 2207.9 544 1798 551 834 1087 1087 1 AEVLSEEPILK Unmodified 1226.6758 0.6758189 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 59.965 59.965 3 0.00037328 18162 TMT1-3 95.573 51.264 54.046 88.271 39.05 67.102 85.88 59.377 51 87 44 65 87 58 1 1 1 1 1 1 8524.6 545 2073 552 835 1088 1088 1 AEVQVLVLDGR Acetyl (N-term) 1239.6823 0.68230126 1071 P40429 RPL13A 60S ribosomal protein L13a yes yes 1 0 0 0 0 2 0 1 73.004 73.004 2 2.6977E-05 23627 TMT1-1 92.051 81.584 0 30.644 12.661 14.547 0 14.924 0 29 14 14 0 14 0 2 2 2 0 2 13449 546 1071 553 836 1089;1090 1089 2 AEVSELK Unmodified 774.41233 0.41233399 1486;1487;1922 P67936;P67936-2;Q2TAC2-2;Q2TAC2 TPM4;CCDC57 Tropomyosin alpha-4 chain;Coiled-coil domain-containing protein 57 no no 0 0 0 0 0 3 1.41 1 1 1 1 1 42.547 42.547 2 0.0080509 10049 TMT 1-phospho 120.49 27.226 21616 30639 27064 20499 25480 30699 20439 30591 27657 20669 26268 29480 7 7 7 7 7 7 2622900 547 1486;1487;1922 554 837;838;839;840;841 1091;1092;1093;1094;1095;1096;1097 1091 7 AEVSQPR Unmodified 785.40317 0.40316629 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 2.5 0.5 1 1 24.785 24.785 2 0.0097947 5191 TMT1-2 110.81 34.773 100.78 99.904 109.36 70.778 132.53 66.574 95 102 110 73 132 66 3 3 3 3 3 3 22517 548 845 555 842;843 1098;1099;1100 1099 3 AEVVETTQVYTEEETRR Unmodified 2038.9807 0.98072771 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2 0 2 46.061 46.061 3;4 9.711E-25 13327 TMT1-1 126.26 101.21 23.259 44.908 20.34 14.655 28.077 46.103 22 44 22 15 29 44 1 1 1 1 1 1 3447.6 549 1833 556 844;845 1101;1102 1102 2 AEVVGAVR Unmodified 799.4552 0.45520186 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7;Q9Y6F6-6 MRVI1 Protein MRVI1 yes no 0 0 0 0 0 4 0 1 35.794 35.794 2 0.0088576 8623 TMT1-3 101.28 34.291 115.92 106.75 84.287 64.153 99.339 128.28 109 109 87 65 102 123 1 1 1 1 1 1 11855 550 3056 557 846 1103 1103 1 AEWQVYKEEISR Unmodified 1536.7573 0.75725712 1535 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 1 6 0 1 54.373 54.373 3 0.0002191 15891 TMT1-5 97.084 68.459 123.08 136.55 118.33 133.35 147.92 143.95 116 138 123 131 152 139 1 1 1 1 1 1 17273 551 1535 558 847 1104 1104 1 AEYEFDSPYWDDISDSAK Unmodified 2136.88 0.88001061 1746 Q14012;Q8IU85-2;Q8IU85 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D yes no 0 0 0 0 0 4 0 1 71.472 71.472 3 4.5032E-08 22733 TMT1-3 99.392 75.092 61.297 103.23 69.924 57.46 93.909 51.686 58 102 73 58 94 51 1 1 1 1 1 1 22670 552 1746 559 848 1105 1105 1 AEYGTLLQDLTNNITLEDLEQLK Acetyl (N-term) 2675.3542 0.35415699 1831 Q15121 PEA15 Astrocytic phosphoprotein PEA-15 yes yes 1 0 0 0 0 5.5 0.5 1 1 110.01 110.01 3 2.7539E-11 34440 TMT1-5 43.497 21.062 4.2331 6.0183 4.8 5.108 3.77 5.2224 4 6 5 5 4 5 2 2 2 2 2 2 1589.4 553 1831 560 849;850 1106;1107 1107 2 AEYLASIFGTEK Acetyl (N-term) 1369.6765 0.67654718 619 P0DN76;Q01081;Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 1 0 0 0 0 5.67 0.471 1 2 94.049 94.049 2 6.6923E-30 30970 TMT1-5 107.79 76.714 41.369 53.01 35.46 26.594 42.721 60.609 39 53 37 27 44 58 2 2 2 2 2 2 18694 554 619 561 851;852;853 1108;1109;1110 1110 3 AEYLASIFGTEKDK Acetyl (N-term) 1612.7985 0.79845323 619 P0DN76;Q01081;Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 1 0 0 0 1 6 0 1 82.008 82.008 3 0.0092132 26785 TMT1-5 48.625 15.216 23.337 28.938 20.622 29.815 34.71 45.914 22 29 22 29 36 44 1 1 1 1 1 1 8472 555 619 562 854 1111 1111 1 AEYSPCR Unmodified 881.37015 0.3701516 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 3.5 0.5 1 1 29.007 29.007 2 3.7294E-12 6958 TMT1-2 180 123.11 1589.7 2081.3 1920.6 1242.4 1951.9 2112.5 1502 2087 1949 1275 1990 2034 4 4 4 4 4 4 310140 556 565 563 855;856 1112;1113;1114;1115 1113 4 AFAAGADIK Unmodified 862.45487 0.45486751 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 6 0 1 47.772 47.772 2 0.00026318 13270 TMT1-5 143.01 80.81 50.331 394.17 404.13 301.38 419.77 531.68 51 380 408 305 432 510 1 1 1 1 1 1 34973 557 952 564 857 1116 1116 1 AFAAQEDLEK Unmodified 1120.5401 0.5400537 1015 P35241;P35241-5;P35241-4;P35241-2 RDX Radixin yes no 0 0 0 0 0 4 0 1 49.578 49.578 2 1.756E-06 14097 TMT1-3 161.17 108.59 115.82 137.77 74.827 64.713 99.57 120.81 109 138 80 65 102 116 1 1 1 1 1 1 15100 558 1015 565 858 1117 1117 1 AFADALEVIPMALSENSGMNPIQTMTEVR Unmodified 3134.5086 0.50864228 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 7 0 2 99.25 99.25 3;4 0.017505 32316 TMT1-6 31.111 18.915 7.3497 15.227 14.197 0 0 15.99 7 15 14 0 0 15 1 1 1 0 0 1 2410.7 559 1161 566 859;860 1118;1119 1119 2 AFADAMEVIPSTLAENAGLNPISTVTELR Unmodified 3029.538 0.53795179 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 6.33 0.471 2 1 94.889 94.889 3 9.0189E-06 30810 TMT1-6 58.08 51.049 0 0 16.23 0 6.523 23.266 0 0 15 0 7 22 0 0 1 0 1 1 3027.7 560 1233 567 861;862;863 1120;1121;1122 1122 3 AFAETHIK Unmodified 915.48142 0.48141661 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 38.847 38.847 3 0.027057 9742 TMT1-5 57.598 43.441 122.85 182.34 117.03 100.99 187.38 165.21 116 181 123 102 189 160 1 1 1 1 1 1 11535 561 1101 568 864 1123 1123 1 AFALEVIK Unmodified 889.5273 0.52730417 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 8 0 1 64.271 64.271 2 0.0060952 19216 TMT1-7 109.86 48.026 155.1 420.26 266.49 283.73 516.15 459.64 148 409 282 283 521 445 1 1 1 1 1 1 29113 562 2633 569 865 1124 1124 1 AFALNDLDDYEK Unmodified 1412.646 0.64597533 1760 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 0 5 0 1 65.854 65.854 3 0.00030754 20216 TMT1-4 89.301 51.347 77.54 62.602 79.499 65.409 47.716 76.456 73 65 80 65 51 73 1 1 1 1 1 1 5065.8 563 1760 570 866 1125 1125 1 AFAMIIDK Unmodified 907.48372 0.48372479 1843;1844 Q15365;Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP1;PCBP2 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2 no no 0 0 0 0 0 8 0 1 65.224 65.224 2 0.012511 19608 TMT1-7 96.492 44.804 91.654 169.14 141.79 100.8 118.84 151.18 87 167 145 102 123 145 1 1 1 1 1 1 9155.5 564 1843;1844 571 867 1126 1126 1 AFASPVENPDNYCFCTEK Unmodified 2147.8928 0.89284068 749 P16671;P16671-3;P16671-4 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 5.33 0.471 2 1 62.023 62.023 3;4 7.3966E-15 18813 TMT1-5 127.62 112.69 330.28 417.91 400.79 458.46 447.12 560.75 312 420 414 449 466 538 4 4 4 4 4 4 146900 565 749 572 868;869;870 1127;1128;1129;1130 1130 4 AFAVVASALGIPSLLPFLK Unmodified 1913.139 0.13900667 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 9 0 1 106.58 106.58 3 5.6984E-10 33294 TMT1-8 86.548 72.282 0 11.519 11.045 3.7137 0 11.726 0 11 11 4 0 11 0 1 1 1 0 1 901.52 566 286 573 871 1131 1131 1 AFCAENLEEK Unmodified 1209.5336 0.53358811 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 0 4 0 2 50.636 50.636 2;3 0.0019923 14470 TMT1-3 83.883 58.666 145.68 249.8 190.31 135.48 213.26 248.69 138 247 196 138 218 239 2 2 2 2 2 2 67520 567 1179 574 872;873 1132;1133 1132 2 AFCDDAVGLR Unmodified 1122.5128 0.51279309 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 4 0 1 49.484 49.484 2 4.1118E-29 14064 TMT1-3 214.23 164.79 99.436 121.89 136.34 115.84 149.83 111.92 94 123 138 116 152 109 1 1 1 1 1 1 20209 568 2004 575 874 1134 1134 1 AFCVANK Unmodified 808.39016 0.39015876 1823 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 yes yes 0 0 0 0 0 8 0 1 43.924 43.924 2 0.024783 11191 TMT1-7 93.885 51.993 122.93 143.7 137 69.056 136.51 135.75 116 145 138 73 138 131 1 1 1 1 1 1 8237.9 569 1823 576 875 1135 1135 1 AFDEVKVDK Unmodified 1049.5393 0.53932542 2252 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 1 5 0 1 46.711 46.711 3 0.011988 12682 TMT1-4 72.2 42.391 171.24 265.84 210.05 202.4 137.71 348.92 162 264 218 199 152 331 1 1 1 1 1 1 13607 570 2252 577 876 1136 1136 1 AFDFLSEETEASLASR Unmodified 1771.8265 0.8264589 219 O60271-5;O60271-3;O60271-4;O60271-2;O60271;O60271-9 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 0 0 4 0 1 73.327 73.327 3 1.2351E-08 23469 TMT1-3 108.14 68.07 30.797 20.725 36.255 29.148 20.632 30.325 29 22 36 29 22 29 1 1 1 1 1 1 4677.9 571 219 578 877 1137 1137 1 AFDLIVDRPVTLVR Unmodified 1612.9301 0.93007653 382 O96000;O96000-2 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 0 1 8 0 1 65.076 65.076 3 0.00025528 19524 TMT1-7 82.515 49.107 61.834 49.676 25.046 68.234 70.107 90.741 58 51 29 65 73 87 1 1 1 1 1 1 8342.9 572 382 579 878 1138 1138 1 AFDLVPPEAVPEQKDPDPEFPTVK Unmodified 2664.3323 0.33229934 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 1 5.33 0.471 2 1 70.675 70.675 4;5 2.4916E-05 22173 TMT1-4 64.488 54.902 324.1 412.58 362.57 279.85 418.15 546.65 306 414 371 283 430 524 4 4 4 4 4 4 47084 573 2407 580 879;880;881 1139;1140;1141;1142 1140 4 AFDSAVAK Unmodified 807.41267 0.41266834 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 6 0 1 44.122 44.122 2 0.00492 11812 TMT1-5 121.62 55.361 200.61 216.42 183.34 160.84 165.25 211.68 189 219 189 160 172 203 1 1 1 1 1 1 19774 574 1913 581 882 1143 1143 1 AFDSGIIPMEFVNK Unmodified 1566.7752 0.77521537 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 7 0 1 76.571 76.571 3 2.2908E-05 23997 TMT1-6 92.039 55.269 30.53 58.837 48.85 59.442 55.319 76.239 29 58 51 58 58 73 1 1 1 1 1 1 8955.4 575 1283 582 883 1144 1144 1 AFEADSTVIEK Unmodified 1208.5925 0.5924832 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 53.454 53.454 3 0.0015499 15664 TMT1-3 81.017 48.07 68.804 125.37 51.889 67.317 91.88 97.582 65 123 58 66 94 94 1 1 1 1 1 1 6563.4 576 1138 583 884 1145 1145 1 AFEDELR Unmodified 878.4134 0.41339662 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 2 0 1 45.691 45.691 2 0.011528 13209 TMT1-1 104.21 37.216 115.83 106.51 99.14 95.4 76.187 90.568 109 109 102 94 80 87 1 1 1 1 1 1 10368 577 651 584 885 1146 1146 1 AFEEAEK Unmodified 822.37595 0.37594848 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2.5 0.5 1 1 40.533 40.533 2 0.0075382 11475 TMT1-2 126.67 95.594 580.77 644.43 670.05 468.56 741.95 703.71 548 653 677 478 753 680 2 2 2 2 2 2 58862 578 1311 585 886;887 1147;1148 1148 2 AFEGQAHGADR Unmodified 1157.5214 0.52138394 642 P11169;Q8TDB8-4;Q8TDB8-2;Q8TDB8;Q8TDB8-5;Q8TDB8-3 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 0 0 0 0 0 3 0.707 1 2 1 25.047 25.047 2;3 3.4008E-09 5168 TMT1-1 160.62 134.72 432.67 451.05 296.9 281.07 270.33 463.46 407 456 313 278 286 442 8 8 8 8 8 8 136850 579 642 586 888;889;890;891 1149;1150;1151;1152;1153;1154;1155;1156 1149 8 AFEVMDEFDGR Unmodified 1314.5551 0.55505184 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 3 0 1 65.735 65.735 2 0.0006214 21446 TMT1-2 74.841 57.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 580 2852 587 892 1157 1157 1 AFFAEVVSDGVPLVLALVPHR Unmodified 2235.2416 0.24157426 2061 Q6ZNJ1-2;Q6ZNJ1 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 97.772 97.772 4 2.8164E-06 30055 TMT1-8 67.645 49.845 7.511 15.589 22.209 22.038 36.407 37.337 7 15 22 22 37 36 1 1 1 2 2 2 5831.9 581 2061 588 893 1158;1159 1158 2 AFFAGSQR Unmodified 882.4348 0.43480077 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 42.574 42.574 2 0.0013031 8932 TMT1-8 147.16 74.801 146.35 157.77 155.69 137.93 192.76 172.52 138 160 159 138 196 167 2 2 2 2 2 2 22017 582 1792 589 894 1160;1161 1160 2 AFFPCFDTPAVK Unmodified 1398.6642 0.66420836 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 9 0 1 70.805 70.805 3 0.00014943 19948 TMT1-8 91.937 63.769 46.404 95.976 54.497 50.876 86.077 75.362 44 94 58 51 87 73 1 1 1 1 1 1 13459 583 2648 590 895 1162 1162 1 AFFSEVER Unmodified 983.47125 0.47124585 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 5 0 1 52.358 52.358 2 0.0060623 14891 TMT1-4 110.31 92.085 168.92 325.96 187.45 191.69 197.46 268.33 160 320 200 189 206 257 1 1 1 1 1 1 75346 584 2943 591 896 1163 1163 1 AFFTEEYVR Unmodified 1160.5502 0.55022446 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 5 0 1 57.395 57.395 2 0.00036075 16890 TMT1-4 105.81 93.961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 585 2305 592 897 1164 1164 1 AFGDVVVK Unmodified 833.4647 0.46470391 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6.5 0.5 1 1 53.448 53.448 2 0.0045747 14904 TMT1-6 124.08 48.7 483.23 1050 668.66 595.92 483.58 990.37 459 1028 703 590 521 942 2 2 2 2 2 2 108040 586 570 593 898;899 1165;1166 1166 2 AFGELCPNTAPLPQLVTEALQTGTTEWFHLK Unmodified 3468.7388 0.73877687 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 98.921 98.921 5 0.036384 30590 TMT1-8 21.467 3.3725 23.45 14.141 14.235 23.095 5.461 23.296 22 15 15 22 7 22 1 1 1 1 1 1 1797.5 587 2066 594 900 1167 1167 1 AFGFSHLEALLDDSK Unmodified 1648.8097 0.80968662 2405 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 0 6.5 0.5 1 1 72.523 72.523 3 5.3527E-15 22330 TMT1-6 134.24 97.605 238.81 249.28 227.87 156.96 288.69 216.69 225 253 232 161 290 211 3 3 3 3 3 3 40564 588 2405 595 901;902 1168;1169;1170 1169 3 AFGFSHLEALLDDSKELQR Unmodified 2175.096 0.096032235 2405 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 1 7 0 1 70.295 70.295 4 1.3458E-06 21502 TMT1-6 82.865 66.359 176.52 278.19 213.37 159.09 163.49 143.51 167 276 220 160 168 139 1 1 1 1 1 1 19533 589 2405 596 903 1171 1171 1 AFGGPGAGCISEGR Unmodified 1334.6037 0.60373336 2646 Q9H479 FN3K Fructosamine-3-kinase yes yes 0 0 0 0 0 5 0 1 43.22 43.22 2 5.7896E-17 11344 TMT1-4 153.11 128.83 30.57 58.95 41.939 44.401 63.34 76.011 29 58 44 44 65 73 1 1 1 1 1 1 7693.7 590 2646 597 904 1172 1172 1 AFGHHAVSLLDGGLR Unmodified 1548.8161 0.8161094 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 8 0 1 47.396 47.396 4 0.0011502 12574 TMT1-7 65.809 44.837 69.098 72.219 47.509 67.154 56.32 36.769 65 73 51 65 58 36 1 1 1 1 1 1 11504 591 883 598 905 1173 1173 1 AFGPGLQGGSAGSPAR Unmodified 1428.711 0.71097563 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.67 2.62 1 2 2 1 43.706 43.706 2;3 7.8392E-114 11016 TMT1-6 275.44 234.82 1055.7 1217.1 1160.1 982.1 1000.1 1301.8 996 1229 1185 979 1042 1248 6 6 6 6 6 6 829250 592 831 599 906;907;908;909;910;911 1174;1175;1176;1177;1178;1179 1175 6 AFGYYGPLR Unmodified 1042.5236 0.52361577 1524 P84103-2;P84103 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 0 0 8.5 0.5 1 1 55.304 55.304 2 0.00047008 15681 TMT1-7 136.89 102.11 398.61 679.02 417.94 491.26 508.51 617.63 377 670 446 481 528 593 3 3 3 3 3 3 102210 593 1524 600 912;913 1180;1181;1182 1180 3 AFHNEAQVNPER Unmodified 1410.664 0.66402543 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 3.5 0.5 1 1 30.644 30.644 3 4.05E-09 6564 TMT1-3 141.38 117.9 122.88 159.76 131.1 179.9 131.4 166.81 116 160 138 174 139 160 3 3 3 3 3 3 56495 594 770 601 914;915 1183;1184;1185 1185 3 AFHNEAQVNPERK Unmodified 1538.759 0.75898845 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 1 5 0 1 31.379 31.379 4 0.0019203 6578 TMT1-4 68.83 38.392 146.7 158.75 95.834 95.757 125.83 197.88 138 160 102 95 131 189 2 2 2 2 2 2 17246 595 770 602 916 1186;1187 1186 2 AFIDVTAAAENIR Unmodified 1389.7252 0.72522871 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 65.108 65.108 2 4.5144E-28 20083 TMT1-5 198.81 149.44 122.94 143.73 135.25 108.26 149.66 126.85 116 145 138 109 152 123 1 1 1 1 1 1 47471 596 856 603 917 1188 1188 1 AFIHWVSQPLMCEVR Unmodified 1871.9175 0.9174797 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 9 0 1 66.18 66.18 3 0.00062302 18168 TMT1-8 63.037 39.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 597 1146 604 918 1189 1189 1 AFIISFK Unmodified 824.47963 0.47962569 2669 Q9HAB8;Q9HAB8-2 PPCS Phosphopantothenate--cysteine ligase yes no 0 0 0 0 0 9 0 1 68.148 68.148 2 0.013713 18914 TMT1-8 107.43 30.583 115.72 113.75 112.1 134.88 86.099 175.57 109 116 116 131 94 167 1 1 1 1 1 1 17920 598 2669 605 919 1190 1190 1 AFIPAIDSFGFETDLR Unmodified 1797.8938 0.8937506 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 7 0 1 83.564 83.564 3 9.7346E-08 26700 TMT1-6 103.79 84.716 23.193 28.537 45.192 13.172 28.146 46.101 22 29 44 15 29 44 1 1 1 1 1 1 9926.2 599 1816 606 920 1191 1191 1 AFIQLWAFDAVK Unmodified 1407.7551 0.75507227 443 P02760 AMBP Protein AMBP;Alpha-1-microglobulin;Inter-alpha-trypsin inhibitor light chain;Trypstatin yes yes 0 0 0 0 0 9 0 1 84.482 84.482 3 1.3672E-05 25272 TMT1-8 99.215 70.888 61.534 72.584 56.132 43.964 41.629 69.168 58 73 58 44 44 66 2 2 2 2 2 2 4259.1 600 443 607 921 1192;1193 1192 2 AFITNIPFDVK Unmodified 1263.6863 0.68632401 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 8.5 0.5 1 1 73.301 73.301 3 0.0003601 20878 TMT1-8 84.658 57.56 291.89 501.08 290.22 355.24 416.37 436.9 276 494 312 348 428 421 4 4 4 4 4 4 55742 601 1261 608 922;923 1194;1195;1196;1197 1196 4 AFLADPSAFVAAAPVAAATTAAPAAAAAPAK Unmodified 2751.4596 0.45956554 496 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 0 9 0 2 80.055 80.055 3;4 1.2608E-16 23631 TMT1-8 83.236 63.339 83.621 141.04 73.079 103.21 150.39 142.82 79 139 80 101 153 138 3 3 3 3 3 3 35966 602 496 609 924;925 1198;1199;1200 1199 3 AFLDFHALPYQVVEVNPVR Unmodified 2213.1633 0.16332394 2658 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 0 0 0 0 0 8 0 1 75.258 75.258 3 3.0811E-08 23551 TMT1-7 71.592 52.833 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 603 2658 610 926 1201 1201 1 AFLDNPGILSELCGTLSR Unmodified 1961.9881 0.98806169 2021 Q6NXE6-2;Q6NXE6 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 0 0 7 0 1 82.76 82.76 3 0.00020015 26365 TMT1-6 68.123 50.617 15.832 37.021 12.909 22.893 20.369 46.323 15 36 15 22 22 44 1 1 1 1 1 1 4710.1 604 2021 611 927 1202 1202 1 AFLEETNAK Unmodified 1021.508 0.50802529 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 5 0 1 49.244 49.244 2 0.00035885 13706 TMT1-4 105.52 78.406 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605 2375 612 928 1203 1203 1 AFLHVPAK Unmodified 881.51232 0.51232281 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 9 0 1 46.355 46.355 3 0.0024748 10383 TMT1-8 81.635 51.825 161.04 194.67 180.17 144.15 191.3 267.44 152 196 184 145 198 256 1 1 1 1 1 1 43806 606 704 613 929 1204 1204 1 AFLIEEQK Unmodified 976.52295 0.52294707 1172 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 0 5.5 0.5 1 1 55.248 55.248 2 0.0055907 16125 TMT1-5 116.73 55.753 198.71 277.86 270.96 224.4 285.84 209.31 188 278 276 225 290 204 2 2 2 2 2 2 49763 607 1172 614 930;931 1205;1206 1206 2 AFLLMFIK Unmodified 981.57215 0.57214587 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 86.705 86.705 2 0.0071035 26190 TMT1-8 117.7 48.267 38.163 51.109 34.769 20.752 64.977 59.974 36 51 36 22 65 58 1 1 1 1 1 1 2956 608 1229 615 932 1207 1207 1 AFLQGGQEATDIALLLR Unmodified 1814.989 0.98904797 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 80.31 80.31 3 7.1905E-14 25399 TMT1-6 122.13 100.67 30.641 35.403 49.924 66.887 62.856 60.034 29 36 51 65 65 58 1 1 1 1 1 1 16757 609 1762 616 933 1208 1208 1 AFLSDMIK Unmodified 923.47864 0.47863942 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 65.146 65.146 2 0.0060952 19554 TMT1-7 109.86 66.836 99.849 123.03 66.062 113.1 111.45 136.47 94 123 73 109 116 131 1 1 1 1 1 1 14580 610 1229 617 934 1209 1209 1 AFLTLAEDILR Unmodified 1260.7078 0.70778773 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 8 0.816 1 1 1 88.807 88.807 2 3.9238E-23 28749 TMT1-7 193.38 137.7 632.85 1073.9 929.46 764.68 912.27 1013.3 600 1064 953 766 939 975 6 6 6 6 6 6 233520 611 1372 618 935;936;937 1210;1211;1212;1213;1214;1215 1213 6 AFLTSHK Unmodified 802.43374 0.43373813 2395 Q96DZ9-4;Q96DZ9-5;Q96DZ9-3;Q96DZ9-6;Q96DZ9-2;Q96DZ9 CMTM5 CKLF-like MARVEL transmembrane domain-containing protein 5 yes no 0 0 0 0 0 9 0 1 38.739 38.739 3 0.0018964 7700 TMT1-8 112.37 58.691 520.58 755.1 593.8 750.73 567.88 917.61 492 752 624 729 606 876 2 2 2 2 2 2 83609 612 2395 619 938 1216;1217 1217 2 AFMTADLPNELIELLEK Unmodified 1946.0071 0.0070657979 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 6.8 0.748 2 2 1 99.823 99.823 3;4 1.0363E-18 32456 TMT1-6 130.06 110.22 166.6 198.83 163.95 162.08 160.82 162.77 157 200 170 160 165 157 6 7 7 7 6 7 33436 613 1540 620 939;940;941;942;943 1218;1219;1220;1221;1222;1223;1224 1221 7 AFNDPFIQK Unmodified 1078.5447 0.54474515 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 7 0 1 60.222 60.222 3 0.028034 17540 TMT1-6 52.49 21.416 130.5 174.64 101.24 124.9 186.54 218.54 123 174 109 123 191 210 1 1 1 1 1 1 12583 614 2303 621 944 1225 1225 1 AFNFLNEIK Unmodified 1094.576 0.57604528 1255 P51809;P51809-2;P51809-3 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 0 8 0 1 70.818 70.818 3 0.00039971 21779 TMT1-7 107.15 51.143 68.49 93.191 132.01 85.23 105.96 120.63 65 94 131 87 109 116 1 1 1 1 1 1 12896 615 1255 622 945 1226 1226 1 AFPALTSLDLSDNPGLGER Unmodified 1971.9902 0.99017018 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 6 0 1 74.87 74.87 3 3.4896E-07 23973 TMT1-5 89.049 70.954 99.463 114.41 138.2 84.156 143.44 127.02 94 116 138 87 145 123 1 1 1 1 1 1 25702 616 568 623 946 1227 1227 1 AFPAWADTSVLSR Unmodified 1419.7147 0.71466402 1567 Q02252-2;Q02252 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes no 0 0 0 0 0 8 0 1 67.359 67.359 2 4.2132E-10 20475 TMT1-7 129.88 98.006 37.807 88.973 62.561 50.277 92.371 106.1 36 87 65 51 94 102 1 1 1 1 1 1 12633 617 1567 624 947 1228 1228 1 AFPCWDEPAIK Unmodified 1332.6173 0.61725816 1324 P55786 NPEPPS Puromycin-sensitive aminopeptidase yes yes 0 0 0 0 0 6 0 2 64.243 64.243 2;3 0.0064237 19827 TMT1-5 84.17 46.662 313.8 319.53 369.32 303.3 427.95 321.45 296 326 373 305 433 313 2 2 2 2 2 2 21994 618 1324 625 948;949 1229;1230 1230 2 AFPFHIIFDR Unmodified 1261.6608 0.66077796 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 9 0 1 68.243 68.243 3 0.0012122 18987 TMT1-8 84.17 40.924 38.149 34.88 50.937 43.992 56.579 60.213 36 36 51 44 58 58 1 1 1 1 1 1 7036.7 619 1565 626 950 1231 1231 1 AFPNPYADYNK Unmodified 1298.5932 0.5931519 205 O43813 LANCL1 LanC-like protein 1 yes yes 0 0 0 0 0 7 0 1 55.365 55.365 2 6.1587E-05 15664 TMT1-6 115.18 81.215 30.357 74.547 64.5 27.035 43.507 37.135 29 73 65 29 44 36 1 1 1 1 1 1 7874.7 620 205 627 951 1232 1232 1 AFQAVQNLPTK Unmodified 1215.6612 0.66117189 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 8 0 1 54.227 54.227 3 0.00043593 15257 TMT1-7 93.843 56.731 192.01 276.31 136.53 233.27 240.13 279.9 181 274 152 225 249 269 1 1 1 1 1 1 25198 621 2172 628 952 1233 1233 1 AFQAVQNLPTKK Unmodified 1343.7561 0.75613491 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 1 9 0 2 49.354 49.354 3;4 0.0027007 11544 TMT1-8 60.628 34.504 252.71 412.4 279.19 216.61 267.07 339.89 239 408 291 218 276 326 2 2 2 2 2 2 23060 622 2172 629 953;954 1234;1235 1235 2 AFQGLLDTYSVWR Unmodified 1554.7831 0.78307794 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 9 0 1 77.816 77.816 3 2.6112E-13 22706 TMT1-8 138.42 97.832 30.445 58.601 63.295 75.556 24.508 68.591 29 58 65 73 29 65 1 1 1 1 1 1 16332 623 2053 630 955 1236 1236 1 AFQNVFAPR Unmodified 1048.5454 0.54541385 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 9 0 1 54.018 54.018 2 0.0042335 13403 TMT1-8 103.83 76.53 99.932 91.968 78.335 49.469 85.372 97.768 94 94 80 51 87 94 1 1 1 1 1 1 6772 624 725 631 956 1237 1237 1 AFQSLLTEVNK Unmodified 1248.6714 0.67140222 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 7.5 0.5 1 1 67.015 67.015 3 2.5092E-07 20277 TMT1-7 140.48 99.768 289.88 552.49 405.63 416 422.72 475.1 275 544 424 410 438 457 3 3 3 3 3 3 56022 625 1222 632 957;958 1238;1239;1240 1239 3 AFQYVETHGEVCPANWTPDSPTIKPSPAASK Unmodified 3384.6085 0.60849098 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 1 7 0 1 59.379 59.379 5 1.8062E-09 17221 TMT1-6 76.835 75.169 170.65 218.71 167.48 152.71 183.19 248.48 161 219 174 152 190 238 1 1 1 1 1 1 44443 626 949 633 959 1241 1241 1 AFREEAIK Unmodified 962.51853 0.5185304 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 5 0 1 38.164 38.164 3 0.010533 9297 TMT1-4 81.548 34.35 558.38 957.4 560 722.53 837.34 936.57 528 944 603 706 863 901 1 1 1 1 1 1 40091 627 676 634 960 1242 1242 1 AFSDLTSR Acetyl (Protein N-term) 937.45051 0.45051041 6 A1L3X0 ELOVL7 Elongation of very long chain fatty acids protein 7 yes yes 0 1 0 0 0 3 0 1 55.613 55.613 2 0.0050563 17442 TMT1-2 70.919 37.122 23.37 21.474 21.401 22.377 20.943 30.316 22 22 22 22 22 29 1 1 1 1 1 1 6778 628 6 635 961 1243 1243 1 AFSDPFVEAEK Unmodified 1238.5819 0.58191851 1009 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 0 5 0 1 62.183 62.183 2 3.3061E-07 18769 TMT1-4 151.15 107.64 146.09 161.36 196.34 119.38 178.71 149.47 138 164 196 123 181 145 1 1 1 1 1 1 22591 629 1009 636 962 1244 1244 1 AFSGYLGTDQSK Unmodified 1272.5986 0.59863121 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 6.33 0.471 2 1 53.085 53.085 2;3 1.2084E-09 15339 TMT1-5 120.55 86.59 177.14 217.32 160.96 130.15 182.9 226.1 167 218 167 131 188 217 2 2 2 2 2 2 23230 630 637 637 963;964;965 1245;1246;1247 1246 3 AFSITQGLLK Unmodified 1076.623 0.62299547 124 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 0 9 0 1 66.445 66.445 2 0.00021774 18281 TMT1-8 127.76 70.849 68.905 63.046 87.794 49.604 48.186 83.905 65 65 87 51 51 80 1 1 1 1 1 1 7225.7 631 124 638 966 1248 1248 1 AFSTSMEISIK Oxidation (M) 1228.6009 0.6009394 2289 Q8WYK0-2;Q8WYK0 ACOT12 Acyl-coenzyme A thioesterase 12 yes no 0 0 1 0 0 6 0 1 39.866 39.866 3 0.039297 10147 TMT1-5 57.348 41.592 225.05 358.85 284.61 194.58 316.9 258.52 213 356 292 199 320 251 1 1 1 1 1 1 39022 632 2289 639 967 1249 1249 289 1 AFSYYGPLR Unmodified 1072.5342 0.53418046 1895 Q16629-3;Q16629-2;Q16629-4;Q16629 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 0 8 0 1 55.079 55.079 2 4.7148E-20 15605 TMT1-7 198.07 137.48 227.58 310.13 261.18 178.6 311.16 294.93 215 310 267 183 315 285 1 1 1 1 1 1 45992 633 1895 640 968 1250 1250 1 AFTELQAK Unmodified 906.48108 0.48108226 247 O60925 PFDN1 Prefoldin subunit 1 yes yes 0 0 0 0 0 6 0 1 49.67 49.67 2 0.036665 14021 TMT1-5 78.334 53.336 139.05 150.24 126.13 132.45 171.04 142.23 131 152 131 131 174 138 1 1 1 1 1 1 9955.5 634 247 641 969 1251 1251 1 AFTGEGQK Unmodified 836.40283 0.40283194 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 6 0 1 36.944 36.944 2 0.032246 8955 TMT1-5 80.165 29.287 115.95 90.646 92.851 63.622 100.43 97.338 109 94 94 65 102 94 1 1 1 1 1 1 6255.5 635 2934 642 970 1252 1252 1 AFTGFIVEADTPGIQIGR Unmodified 1890.984 0.98396259 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 75.334 75.334 2 0.0052326 23515 TMT1-6 44.829 18.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 636 653 643 971 1253 1253 1 AFTHTAQYDEAISDYFR Unmodified 2033.9119 0.91191986 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 5 0 1 60.806 60.806 3 1.4018E-26 18219 TMT1-4 160.04 151.1 53.965 64.301 72.961 42.535 64.232 52.533 51 65 73 44 65 51 1 1 1 1 1 1 32080 637 981 644 972 1254 1254 1 AFTKPEEACSFILSADFPALVVK Unmodified 2539.3032 0.30324782 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 1 8 0 1 81.248 81.248 5 0.00053403 25801 TMT1-7 52.509 33.79 23.291 28.808 28.58 21.372 51.609 21.979 22 29 29 22 51 22 1 1 1 1 1 1 4589.6 638 842 645 973 1255 1255 1 AFTPFSGPK Unmodified 950.48617 0.48616764 674 P12955;P12955-3;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 0 9 0 1 54.982 54.982 2 0.00070634 13732 TMT1-8 131.06 61.063 108.24 145.65 79.822 112.85 81.102 137.33 102 145 87 109 87 131 1 1 1 1 1 1 12573 639 674 646 974 1256 1256 1 AFVDFLSDEIK Unmodified 1282.6445 0.64451877 1608 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 79.188 79.188 3 0.014814 25602 TMT1-5 57.019 40.387 54.374 26.585 36.137 21.231 35.141 44.835 51 29 36 22 36 43 1 1 1 1 1 1 1635.3 640 1608 647 975 1257 1257 1 AFVDFLSDEIKEER Unmodified 1696.8308 0.83081599 1608 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 1 5 0 1 72.513 72.513 3 3.2212E-17 22897 TMT1-4 152 137.35 430.56 559.57 560.3 440.2 564.06 499.85 407 562 569 443 575 484 2 2 2 2 2 2 82361 641 1608 648 976 1258;1259 1259 2 AFVGAFK Unmodified 738.40646 0.40646075 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 55.125 55.125 2 0.026721 13749 TMT1-8 91.26 59.146 146.14 203.59 152.59 170.12 176.12 157.01 138 203 160 167 181 152 1 1 1 1 1 1 15431 642 2061 649 977 1260 1260 1 AFVGNQLPFIGFTYYR Unmodified 1891.9621 0.96210494 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 9 0 1 81.668 81.668 3 1.0182E-05 24288 TMT1-8 72.175 45.74 23.226 52.371 19.543 22.498 20.388 46.322 22 51 22 22 22 44 1 1 1 1 1 1 20822 643 251 650 978 1261 1261 1 AFVGNQLPFVGFTYYSNR Unmodified 2079.0214 0.021410729 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 9 0 1 78.414 78.414 3 1.2751E-05 22987 TMT1-8 70.802 46.612 30.797 20.725 36.287 28.437 58.357 29.249 29 22 36 29 58 29 1 1 1 1 1 1 8214.5 644 1708 651 979 1262 1262 1 AFVHWYVGEGMEEGEFSEAR Oxidation (M) 2345.0059 0.005896599 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 1 0 0 5 0 1 59.537 59.537 3 2.6774E-05 17705 TMT1-4 76.176 67.08 30.453 43.513 74.728 33.525 72.782 28.837 29 44 73 36 72 29 1 1 1 1 1 1 32272 645 622;1491;2068;2510;1492;2783 652 980 1263 1263 115 1 AFVHWYVGEGMEEGEFSEAR Unmodified 2329.011 0.010981977 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 5.33 0.471 2 1 64.287 64.287 3;4 9.3757E-40 19680 TMT1-4 174.87 169.97 563.07 983.4 831.67 709.43 730.99 822.35 534 973 855 707 757 791 7 7 7 7 7 7 162030 646 622;1491;2068;2510;1492;2783 652 981;982;983 1264;1265;1266;1267;1268;1269;1270 1265 7 AFVLSSVDELEQQR Unmodified 1619.8155 0.81550028 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 66.643 66.643 3 2.613E-06 20494 TMT1-4 103.11 92.26 38.115 43.42 49.391 67.205 47.633 76.459 36 44 51 65 51 73 1 1 1 1 1 1 21654 647 471 653 984 1271 1271 1 AFVPPLAEDLLAR Unmodified 1410.7871 0.78710068 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 78.892 78.892 2 4.2132E-10 24891 TMT1-6 129.88 89.445 68.998 94.604 45.449 83.263 78.065 52.138 65 94 51 80 80 51 2 2 2 2 2 2 11249 648 2440 654 985 1272;1273 1273 2 AFYAELYHIISSNLEK Unmodified 1896.9622 0.96216452 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 9 0 1 84.377 84.377 3 4.7649E-20 25309 TMT1-8 141.85 113.55 130.08 220.97 132.54 234.39 193.23 242.86 123 218 145 225 203 233 2 2 2 2 2 2 40951 649 2907 655 986 1274;1275 1275 2 AFYGDTLVTGFAR Unmodified 1416.7038 0.70376498 2689 Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 7 0 1 66.348 66.348 2 0.0033456 19979 TMT1-6 58.274 32.837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650 2689 656 987 1276 1276 1 AFYMEEGVPYCER Unmodified 1649.6854 0.68541408 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 4 0 1 57.809 57.809 3 0.034097 17383 TMT1-3 45.28 41.312 68.644 109.81 91.904 64.408 61.65 98.445 65 109 94 65 65 94 1 1 1 1 1 1 14999 651 2718 657 988 1277 1277 1 AFYPEEISSMVLTK Unmodified 1613.8011 0.80109577 618 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 6.5 0.5 1 1 76.351 76.351 3 5.9351E-15 23914 TMT1-6 137.68 121.54 303.89 445.76 305.04 265.9 179.77 501.22 287 443 319 263 200 475 4 4 4 4 4 4 54259 652 618 658 989;990 1278;1279;1280;1281 1279 4 AFYVNVLNEEQR Unmodified 1480.731 0.73104237 457 P04040 CAT Catalase yes yes 0 0 0 0 0 5 0 2 60.711 60.711 2;3 5.9654E-09 18251 TMT1-4 151.07 107.58 77.302 93.238 93.621 71.51 85.405 97.767 73 94 95 72 88 94 2 2 2 2 2 2 74218 653 457 659 991;992 1282;1283 1283 2 AGAAEEPGVR Unmodified 955.47231 0.47230849 90 O14523;O14523-2 C2CD2L C2 domain-containing protein 2-like yes no 0 0 0 0 0 2 0 1 28.706 28.706 2 0.0039841 6495 TMT1-1 65.246 35.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 654 90 660 993 1284 1284 1 AGAAPYVQAFDSLLAGPVAEYLK Unmodified 2350.2209 0.2208984 1555 Q01518 CAP1 Adenylyl cyclase-associated protein 1 yes yes 0 0 0 0 0 7.8 0.748 2 2 1 96.578 96.578 3;4 1.1924E-29 31552 TMT1-7 139.98 107 673.55 902.34 906.97 645.82 794.46 1039.1 637 905 918 654 822 996 12 12 12 12 12 12 549630 655 1555 661 994;995;996;997;998 1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296 1293 12 AGACNTVIK Unmodified 932.47495 0.47495102 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 6.5 0.5 1 1 37.767 37.767 2 0.00067918 9218 TMT1-5 131.06 55.682 364.52 550.36 486.29 397.09 184.81 666.31 345 548 498 393 216 630 2 2 2 2 2 2 48274 656 2344 662 999;1000 1297;1298 1297 2 AGADIIITYYTPQLLQWLKEE Unmodified 2464.289 0.28897796 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 1 8 0 1 99.468 99.468 3 0.033547 32543 TMT1-7 38.377 24.646 0 0 7.402 3.8602 3.7541 7.3549 0 0 7 4 4 7 0 0 1 1 1 1 604.88 657 688 663 1001 1299 1299 1 AGAEVVK Unmodified 672.38064 0.38063993 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5 0 1 35.482 35.482 2 0.045814 8244 TMT1-4 83.614 8.3036 129.74 245.95 167.08 129.77 183.69 203.69 123 242 174 131 188 196 1 1 1 1 1 1 7848.2 658 1297 664 1002 1300 1300 1 AGAGLGDGER Unmodified 901.42536 0.42535829 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 0 2 0 1 29.358 29.358 2 0.021625 6724 TMT1-1 75.043 53.341 30.582 66.538 33.506 29.179 27.703 37.585 29 65 36 29 29 36 1 1 1 1 1 1 3306.9 659 2568 665 1003 1301 1301 1 AGAGSATLSMAYAGAR Unmodified 1453.6984 0.69836203 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 2 47.903 47.903 2;3 3.327E-35 12674 TMT1-6 198.33 170.12 131.75 136.21 103.84 118.08 133.75 150.75 124 138 109 116 138 145 2 2 2 2 2 2 37033 660 1075 666 1004;1005 1302;1303 1302 2 AGAHLQGGAK Unmodified 908.48281 0.48281359 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 6.22 2.1 1 4 2 1 1 26.859 26.859 3 6.1545E-06 5047 TMT1-5 149.72 75.79 12638 15646 14877 10363 16003 10783 11934 15740 15103 10568 16108 10544 15 15 15 15 15 15 1198400 661 472 667 1006;1007;1008;1009;1010;1011;1012;1013;1014 1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321 1308 18 AGAHLQGGAKR Unmodified 1064.5839 0.58392462 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 1 8 0 2 22.689 22.689 3;4 0.0012556 3686 TMT1-7 89.029 71.22 73.151 88.528 73.896 59.615 82.995 92.506 69 89 76 60 85 89 2 2 2 2 2 2 11081 662 472 668 1015;1016 1322;1323 1323 2 AGAIAPCEVTVPAQNTGLGPEK Unmodified 2179.0943 0.094317676 496 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 6 0 1 57.717 57.717 4 3.0729E-06 17188 TMT1-5 70.414 67.126 77.498 71.12 79.361 57.055 85.536 82.839 73 73 80 58 87 80 1 1 1 1 1 1 8042.6 663 496 669 1017 1324 1324 1 AGAISASGPELQGAGHSK Unmodified 1636.8169 0.81689726 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 2 39.424 39.424 3;4 1.2592E-27 9947 TMT1-5 165.66 134.67 107.18 275.45 148.08 178.91 188.23 249.4 102 268 160 175 196 239 2 2 2 2 2 2 21113 664 1632 670 1018;1019 1325;1326 1325 2 AGALEMALK Unmodified 902.48954 0.48953845 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 7 0 1 57.652 57.652 2 5.8442E-05 16562 TMT1-6 152.63 87.794 107.99 137.41 128.1 108.88 139.37 212.42 102 138 131 109 145 203 1 1 1 1 1 1 19387 665 772 671 1020 1327 1327 1 AGALEMALKR Unmodified 1058.5906 0.59064948 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 8 0 1 49.505 49.505 3 0.0014083 13409 TMT1-7 60.547 24.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666 772 672 1021 1328 1328 1 AGALNSNDAFVLK Unmodified 1318.6881 0.68811492 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 5.25 2.49 1 1 2 59.163 59.163 3 2.3891E-08 16996 TMT1-6 120.53 91.723 2620.5 3243 2989.5 2234.8 2577.7 3609.5 2474 3261 3047 2252 2681 3455 6 6 6 6 6 6 439590 + 667 506 673 1022;1023;1024;1025 1329;1330;1331;1332;1333;1334;1335 1332 7 AGALQCSPSDAYTK Unmodified 1467.6664 0.6663932 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.8 2.04 1 2 1 1 44.863 44.863 3;4 7.7372E-19 11895 TMT1-4 157.5 136.54 2802 3456.1 3321.6 2608.6 3207.3 3600 2646 3478 3382 2623 3299 3463 8 8 8 8 8 8 480450 668 3010 674 1026;1027;1028;1029;1030 1336;1337;1338;1339;1340;1341;1342;1343 1337 8 AGALQCSPSDAYTKK Unmodified 1595.7614 0.76135622 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7 0 2 42.478 42.478 3;4 9.2862E-15 10526 TMT1-6 133.66 106.69 544.94 728.6 489.26 458.42 401.37 796.57 514 727 514 453 430 758 2 2 2 2 2 2 119710 669 3010 675 1031;1032 1344;1345 1344 2 AGAPTVSLPELR Acetyl (N-term) 1251.6823 0.68230126 2226 Q8NFU3-3;Q8NFU3 TSTD1 Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 yes no 1 0 0 0 0 3.5 0.5 1 1 66.354 66.354 2 0.01292 20641 TMT1-3 72.006 55.803 46.615 42.599 64.202 74.915 55.691 75.163 44 44 65 73 59 72 2 2 2 2 2 2 19920 670 2226 676 1033;1034 1346;1347 1347 2 AGASISTLAGLSLK Unmodified 1287.7398 0.73981614 2888 Q9UJW0-3;Q9UJW0;Q9UJW0-2 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 0 9 0 2 66.747 66.747 2;3 1.5972E-19 18385 TMT1-8 167.2 97.527 84.909 92.993 77.635 65.501 106.86 120.61 80 94 80 66 109 116 2 2 2 2 2 2 12527 671 2888 677 1035;1036 1348;1349 1348 2 AGATSEGVLANFFNSLLSK Unmodified 1924.9894 0.9894419 3057 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 0 9 0 1 93.252 93.252 3 1.5651E-08 28609 TMT1-8 79.676 57.873 54.463 26.834 20.928 22.267 28.277 30.107 51 29 22 22 29 29 1 1 1 1 1 1 4379.7 672 3057 678 1037 1350 1350 1 AGAVEQLR Unmodified 842.46102 0.46101552 562 P08240-2;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 0 0 4 0 1 35.445 35.445 2 0.026407 8496 TMT1-3 84.368 19.056 77.266 101.77 92.37 63.794 92.812 75.17 73 102 94 65 94 73 1 1 1 1 1 1 6864 673 562 679 1038 1351 1351 1 AGAVGPK Unmodified 598.34386 0.34386049 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 6 0 1 32.023 32.023 2 0.046679 7036 TMT1-5 83.229 36.878 69.09 72.195 48.946 34.921 80.287 52.075 65 73 51 36 80 51 1 1 1 1 1 1 3107.4 674 1633 680 1039 1352 1352 1 AGAVSALAK Unmodified 786.45995 0.45995289 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 44.22 44.22 2 0.0010529 11290 TMT1-6 124.98 49.604 230.86 347.87 218.2 242.3 373.13 324.08 218 345 232 240 378 314 2 2 2 2 2 2 20266 675 3047 681 1040;1041 1353;1354 1353 2 AGAYDFPSPEWDTVTPEAK Unmodified 2079.9426 0.94255129 1719;1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6;Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3;Q13554-2;Q13554-5;Q13554-8;Q13554-7;Q13554-3;Q13554-6;Q9UQM7-2;Q13554-4;Q9UQM7;Q13554 CAMK2G;CAMK2D;CAMK2B;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha no no 0 0 0 0 0 5 0 1 68.388 68.388 3 0.00024241 21213 TMT1-4 63.337 40.237 46.507 73.597 56.166 43.552 63.379 76.009 44 73 58 44 65 73 1 1 1 1 1 1 10396 676 1718;1719 682 1042 1355 1355 1 AGCAVTSLLASELTK Unmodified 1519.7916 0.79159371 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 72.246 72.246 3 3.8157E-06 22252 TMT1-6 100.54 64.805 46.808 19.391 51.482 51.652 54.358 114.64 44 22 51 51 58 109 1 1 1 1 1 1 14573 677 228 683 1043 1356 1356 1 AGCECLNESDEHGFDNCLR Unmodified 2281.8787 0.87866395 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 0 2 0 1 44.335 44.335 3 1.1216E-05 12704 TMT1-1 77.08 74.856 23.326 21.35 29.016 21.637 36.148 14.958 22 22 29 22 36 15 1 1 1 1 1 1 8479.1 678 171 684 1044 1357 1357 1 AGDALWLR Unmodified 900.48175 0.48175096 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 7 0.816 1 1 1 53.989 53.989 2 0.00033721 15698 TMT1-5 152.39 65.106 2825 3628.8 3273.4 2338.1 3099.7 3500.8 2668 3641 3336 2371 3181 3367 4 4 4 4 4 4 841500 679 2112 685 1045;1046;1047 1358;1359;1360;1361 1359 4 AGDEFVEK Unmodified 893.41306 0.41306227 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 44.714 44.714 2;3 0.015601 13140 TMT1-2 92.439 48.304 279.11 378.1 378.77 331.91 271.57 450.63 264 379 386 329 289 430 2 2 2 2 2 2 40270 680 1909 686 1048;1049 1362;1363 1363 2 AGDISCNADINPLK Unmodified 1486.7086 0.70859237 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 5 0 1 54.662 54.662 3 6.2986E-05 15808 TMT1-4 88.706 68.887 76.7 162.8 135.73 76.937 128.31 150.91 73 160 138 80 131 145 1 1 1 1 1 1 29710 681 758 687 1050 1364 1364 1 AGDSGPLAYAAAGELEK Acetyl (N-term) 1660.7944 0.79443049 2684 Q9HBX8-1;Q9HBX8-2;Q9HBX8 LGR6 Leucine-rich repeat-containing G-protein coupled receptor 6 yes no 1 0 0 0 0 2 0 1 74.225 74.225 2 0.00092823 24107 TMT1-1 48.004 22.787 21.299 14.275 14.881 8.6563 15.621 20.874 20 15 15 9 16 20 1 1 1 1 1 1 7748.8 682 2684 688 1051 1365 1365 1 AGDTVIPLYIPQCGECK Unmodified 1919.9121 0.91211956 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 6 0 1 67.38 67.38 3 0.01076 21067 TMT1-5 48.883 38.961 68.984 87.01 54.219 66.651 61.804 90.978 65 87 58 65 65 87 1 1 1 1 1 1 33559 683 660 689 1052 1366 1366 1 AGDVEEDASQLIFPK Unmodified 1617.7886 0.78861683 151 O15514 POLR2D DNA-directed RNA polymerase II subunit RPB4 yes yes 0 0 0 0 0 4 0 1 69.783 69.783 3 1.549E-05 22047 TMT1-3 69.92 65.029 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 684 151 690 1053 1367 1367 1 AGEAGKLEEVMQELR Unmodified 1658.8298 0.82977013 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 1 5 0 1 65.822 65.822 3 7.7065E-08 20187 TMT1-4 113.29 70.341 201.76 337.62 248.32 214.59 239.89 311.89 191 334 258 214 249 299 1 1 1 1 1 1 38361 685 2512 691 1054 1368 1368 1 AGELTEDEVER Unmodified 1246.5677 0.56772501 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 0 2 0 1 40.109 40.109 2 2.4889E-06 10987 TMT1-1 131.28 94.759 138.06 142.97 119.71 116.28 179.4 133.46 130 145 124 116 181 130 2 2 2 2 2 2 21369 686 1425 692 1055 1369;1370 1369 2 AGESALELWGGPEPGTQLYDWPYR Unmodified 2691.2605 0.26053138 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 82.221 82.221 3 5.2464E-07 26622 TMT1-4 75.868 67.971 54.105 64.692 49.034 44.766 21.454 46.292 51 65 51 44 22 44 2 2 2 2 1 2 20141 687 224 693 1056;1057 1371;1372 1371 2 AGESVELFGK Unmodified 1035.5237 0.52367535 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5.5 0.5 1 1 55.824 55.824 2 6.2156E-10 16331 TMT1-4 177.7 66.663 273.05 481.23 407.95 340.3 430.86 552.69 259 476 419 341 445 530 2 2 2 2 2 2 60424 688 1870 694 1058;1059 1373;1374 1373 2 AGEVFIHK Unmodified 899.4865 0.48650199 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 6 0 1 42.485 42.485 3 0.004678 11147 TMT1-5 86.011 34.015 317.05 606.67 300.98 478.71 500.31 477.15 300 595 333 463 515 461 1 1 1 1 1 1 66806 689 1837 695 1060 1375 1375 1 AGEVINQPMMMAAR Unmodified 1517.7153 0.71527442 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 0 1 53.714 53.714 2 1.9971E-21 15614 TMT1-5 148.76 111.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 690 776 696 1061 1376 1376 1 AGFAALQLEYFFTAGPDEVR Unmodified 2201.0793 0.079319539 2745 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 7 0 1 89.826 89.826 3 2.7773E-05 28974 TMT1-6 70.094 60.81 15.897 22.093 14.535 6.5053 14.857 15.566 15 22 15 7 15 15 1 1 1 1 1 1 4215.6 691 2745 697 1062 1377 1377 1 AGFAGDDAPR Unmodified 975.44101 0.44100836 1357;1479;1488;2044;9;615 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;A5A3E0;P0CG39;Q6S8J3 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;POTEF;POTEJ;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member J;POTE ankyrin domain family member E no no 0 0 0 0 0 4.33 2.24 1 2 4 2 2 1 1 1 1 35.808 35.808 2 1.2083E-31 9914 TMT1-2 217.66 134.95 65865 96778 79568 62296 78999 104480 62280 96381 81776 62694 81691 100120 34 34 34 34 34 34 12957000 692 1357;1479;1488;9;615;2044 698 1063;1064;1065;1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077 1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412 1392 35 AGFAGDQIPK Unmodified 1002.5134 0.51344502 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 0 6 0 2 48.044 48.044 2;3 0.003197 13331 TMT1-5 77.677 68.245 207.92 230.46 205.26 159.08 189.4 241.91 196 233 210 160 196 232 2 2 2 2 2 2 57387 693 1381;1087 699 1078;1079 1413;1414 1413 2 AGFLAFTQLPK Unmodified 1191.6652 0.66519463 254 O75165 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 0 0 0 0 0 9 0 1 72.015 72.015 3 0.0059973 20487 TMT1-8 60.434 28.371 37.875 74.052 63.751 43.656 33.817 53.401 36 73 65 44 36 51 1 1 1 1 1 1 5704.3 694 254 700 1080 1415 1415 1 AGFLDLK Unmodified 762.42759 0.42759012 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.33 3.09 1 1 1 60.675 60.675 2 0.010436 17726 TMT1-7 108.09 37.057 12505 16872 16519 12146 16448 16964 11825 16909 16761 12296 16815 16354 6 6 6 6 6 6 1401200 695 3010 701 1081;1082;1083 1416;1417;1418;1419;1420;1421 1420 6 AGFLDLKDFLPK Unmodified 1362.7547 0.75473792 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8.67 0.471 1 2 76.454 76.454 3;4 0.0004519 22156 TMT1-8 84.479 52.417 5245.4 7456.3 6033.5 4828.8 4480.1 9406.5 4957 7435 6213 4824 4804 8944 5 5 5 5 5 5 368810 696 3010 702 1084;1085;1086 1422;1423;1424;1425;1426 1424 5 AGFWEEFESLQK Unmodified 1469.6827 0.68269519 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6.33 0.471 2 1 76.261 76.261 2;3 1.0802E-10 24514 TMT1-5 155.26 114.21 344.58 549.78 410.81 369.99 470.01 469.49 326 545 427 369 481 453 4 4 4 4 4 4 111490 697 936 703 1087;1088;1089 1427;1428;1429;1430 1428 4 AGGAAGLFAK Unmodified 861.47085 0.47085192 2849 Q9UBW5;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 8.5 0.5 1 1 51.265 51.265 2 1.6979E-09 14178 TMT1-7 173.88 142.5 505.04 686.33 378.44 432.99 361.24 841.43 476 683 408 423 392 799 3 3 3 3 3 3 78492 698 2849 704 1090;1091 1431;1432;1433 1432 3 AGGAAVVITEPEHTK Unmodified 1478.7729 0.77290718 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 4 0 2 41.314 41.314 3;4 1.2798E-07 10818 TMT1-3 105.99 74.561 153.18 264.37 179.68 183.77 178.53 281.66 145 261 189 181 188 269 2 2 2 2 2 2 26086 699 2822 705 1092;1093 1434;1435 1434 2 AGGADAVQTVTGGLR Unmodified 1371.7106 0.71064128 2622 Q9H223 EHD4 EH domain-containing protein 4 yes yes 0 0 0 0 0 5 0 1 48.659 48.659 2 5.2565E-10 13501 TMT1-4 122.52 89.124 30.44 58.588 64.105 57.383 116.43 65.967 29 58 65 58 116 65 1 1 1 1 1 1 10452 700 2622 706 1094 1436 1436 1 AGGAGVPAFYTPTGYGTLVQEGGSPIK Unmodified 2594.3017 0.30166791 1326 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 0 7 0 1 70.722 70.722 4 4.1299E-12 21661 TMT1-6 89.721 75.411 53.739 103.61 77.514 57.431 71.41 67.252 51 102 80 58 73 65 1 1 1 1 1 1 26910 701 1326 707 1095 1437 1437 1 AGGANYDAQTE Unmodified 1095.4469 0.4468816 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 2 0.816 1 1 1 34.454 34.454 2 2.1211E-05 7730 TMT 1-phospho 119.21 96.719 204.66 205.73 233.88 157.5 240.96 235.11 193 210 235 161 245 227 4 4 4 4 4 4 106110 702 1747 708 1096;1097;1098 1438;1439;1440;1441 1438 4 AGGDAEPRPAEPPAWAGGAR Unmodified 1931.9238 0.92382195 2415 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 1 4 0 1 40.679 40.679 3 0.00020387 10614 TMT1-3 64.83 51.417 54.159 42.177 59.067 19.874 34.654 60.839 51 44 58 22 36 58 1 1 1 1 1 1 7260.7 703 2415 709 1099 1442 1442 1 AGGEAGVTLGQPHLSR Acetyl (Protein N-term) 1590.8114 0.81141795 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 1 0 0 0 3 0 1 45.259 45.259 2 6.3977E-12 13355 TMT1-2 71.219 57.061 7.2718 22.565 21.081 29.911 28.167 53.562 7 22 22 29 30 51 1 1 1 1 1 1 16015 704 1077 710 1100 1443 1443 1 AGGEDRGDGEPVSVVTVR Unmodified 1798.881 0.88095408 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 1 2 0 1 39.744 39.744 3 2.5923E-10 10828 TMT1-1 112.82 78.976 54.018 73.084 56.537 35.049 49.405 67.88 51 73 58 36 51 65 1 1 1 1 1 1 10718 705 3042 711 1101 1444 1444 1 AGGEELDEGVAK Unmodified 1173.5513 0.55134667 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 2 0 1 43.736 43.736 3 0.00018482 12403 TMT1-1 92.707 51.713 68.626 117.31 88.652 127.31 98.011 82.483 65 116 94 123 102 80 1 1 1 1 1 1 12844 706 1924 712 1102 1445 1445 1 AGGFLMK Unmodified 722.37853 0.37853144 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 8.5 0.5 1 1 52.6 52.6 2 0.0082251 12746 TMT1-8 130.65 87.654 730.33 1176.6 690.61 633.49 741.23 1113.1 690 1163 733 630 773 1064 3 3 3 3 3 3 115320 707 397 713 1103;1104 1446;1447;1448 1447 3 AGGGAAEQEELHYIPIR Unmodified 1809.901 0.90096124 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 3 0 1 48.925 48.925 3 1.1431E-24 14802 TMT1-2 149.22 139.29 53.845 80.158 79.609 41.986 72.377 59.763 51 80 80 44 73 58 1 1 1 1 1 1 24112 708 2251 714 1105 1449 1449 1 AGGGAGDPGLGAAAAPAPETR Acetyl (N-term) 1804.8704 0.8703894 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 1 0 0 0 0 2 0 1 48.355 48.355 2 0.00061264 14291 TMT1-1 49.595 33.705 15.803 14.275 37.055 21.576 13.907 23.055 15 15 36 22 15 22 1 1 1 1 1 1 5823.9 709 1734 715 1106 1450 1450 1 AGGIETIANEYSDR Unmodified 1494.6951 0.69505079 1009 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 0 3 0 2 53.078 53.078 2;3 7.5541E-12 16430 TMT1-2 129.29 99.961 84.584 123.39 106.61 78.497 137.66 89.88 80 123 109 80 138 88 3 3 3 3 3 3 38000 710 1009 716 1107;1108 1451;1452;1453 1451 3 AGGPATPLSPTR Unmodified 1123.5986 0.59857163 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 6 0 1 37.448 37.448 2 3.1481E-08 9166 TMT1-5 136.84 94.766 84.995 85.676 69.442 89.238 91.129 90.142 80 87 73 87 94 87 1 1 1 1 1 1 13922 711 1577 717 1109 1454 1454 1 AGGPGLER Unmodified 755.3926 0.3926016 831;270 O75369-2;O75369-9;O75369;O75369-8;O75369-6;O75369-3;O75369-7;P21333-2;P21333 FLNB;FLNA Filamin-B;Filamin-A no no 0 0 0 0 0 4.25 2.95 1 1 1 1 28.44 28.44 2 0.0012909 6800 TMT1-2 143.23 80.514 4751.1 6060.2 4979.7 4044.1 4850.8 6850.3 4484 6075 5127 4055 5040 6556 6 6 6 6 6 6 641920 712 270;831 718 1110;1111;1112;1113 1455;1456;1457;1458;1459;1460 1458 6 AGGPTTPLSPTR Unmodified 1153.6091 0.60913632 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 6 0 1 37.535 37.535 2 3.6789E-08 9271 TMT1-5 134.57 91.284 68.874 79.151 79.238 49.961 56.305 60.221 65 80 80 51 58 58 1 1 1 1 1 1 43634 713 816 719 1114 1461 1461 1 AGGSAALSPSK Unmodified 944.49271 0.49270958 2295 Q92522 H1FX Histone H1x yes yes 0 0 0 0 0 6.5 0.5 1 1 36.636 36.636 2;3 6.1607E-09 8776 TMT1-5 164.97 107.37 185.41 262.26 175.71 247.8 215.14 257.16 175 261 188 240 225 247 2 2 2 2 2 2 20172 714 2295 720 1115;1116 1462;1463 1462 2 AGGSAALSPSKK Unmodified 1072.5877 0.58767259 2295 Q92522 H1FX Histone H1x yes yes 0 0 0 0 1 8 0 1 34.304 34.304 3 0.0002953 7403 TMT1-7 92.856 58.65 138.55 211.43 159.71 267.67 197.56 285.38 131 210 171 257 210 273 1 1 1 1 1 1 15583 715 2295 721 1117 1464 1464 1 AGGSFDLR Unmodified 821.40317 0.40316629 200 O43760;O43760-2 SYNGR2 Synaptogyrin-2 yes no 0 0 0 0 0 5 0 1 41.113 41.113 2 0.023428 10470 TMT1-4 86.512 42.092 177.43 187.91 136.44 185.83 205.99 210.52 167 190 145 181 212 203 1 1 1 1 1 1 19550 716 200 722 1118 1465 1465 1 AGGTSDSFVK Unmodified 967.46108 0.4610751 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 5 0 1 41.035 41.035 2 0.036912 10433 TMT1-4 67.207 52.056 115.02 225.12 135.47 164.5 122.41 205.44 109 221 145 160 131 196 1 1 1 1 1 1 16284 717 2378 723 1119 1466 1466 1 AGHGAGKPTAK Unmodified 993.53558 0.53557744 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 1 8 0 1 24.667 24.667 4 0.0099625 4098 TMT1-7 63.624 45.893 128.03 47.437 82.925 76.08 108.76 51.263 120 54 83 76 109 51 1 1 1 1 1 1 2922.9 718 1150 724 1120 1467 1467 1 AGHGFLLVFAINDR Unmodified 1528.815 0.81504677 628 P10301 RRAS Ras-related protein R-Ras yes yes 0 0 0 0 0 9 0 1 65.515 65.515 3 0.00093991 17929 TMT1-8 60.157 40.598 46.278 80.517 88.688 32.851 64.421 59.99 44 80 88 36 65 58 1 1 1 1 1 1 7290.7 719 628 725 1121 1468 1468 1 AGHIAWTSSGK Unmodified 1113.5567 0.55670682 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 8 0 1 37.888 37.888 3 0.017295 8834 TMT1-7 54.471 35.691 84.722 132.41 75.674 56.443 129.76 135.94 80 131 80 58 131 131 1 1 1 1 1 1 4304.5 720 463 726 1122 1469 1469 1 AGHPPAVK Unmodified 775.43407 0.43407249 1240 P51397 DAP Death-associated protein 1 yes yes 0 0 0 0 0 6 0 1 27.487 27.487 3 0.013596 5239 TMT1-5 68.915 9.7097 207.93 260.68 179.57 160.75 182.27 203.73 196 261 188 160 188 196 2 2 2 2 2 2 11363 721 1240 727 1123 1470;1471 1470 2 AGIFQSVK Unmodified 848.4756 0.47560295 604 P09669 COX6C Cytochrome c oxidase subunit 6C yes yes 0 0 0 0 0 9 0 1 51.978 51.978 2 0.00048523 12543 TMT1-8 155.75 82.138 235.37 583.81 342.78 309.25 253.93 476.72 224 569 363 306 272 454 1 1 1 1 1 1 84747 722 604 728 1124 1472 1472 1 AGIIASAR Unmodified 757.44464 0.44463717 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 7 0 1 36.977 36.977 2 0.005857 8362 TMT1-6 113.1 72.25 249.66 471.56 380.72 238.51 408.42 336.93 237 465 389 246 412 327 1 1 1 1 1 1 38452 723 685 729 1125 1473 1473 1 AGIIQVLLEAVAIAAK Unmodified 1578.9709 0.97087871 1756 Q14156-3;Q14156-2;Q14156 EFR3A Protein EFR3 homolog A yes no 0 0 0 0 0 9 0 1 112.76 112.76 3 0.00017253 34826 TMT1-8 65.805 52.377 0 4.256 0 0 7.322 0 0 4 0 0 7 0 0 1 0 0 1 0 870.61 724 1756 730 1126 1474 1474 1 AGIISTVEVLK Unmodified 1128.6754 0.67542497 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 7 0 1 66.037 66.037 3 7.7791E-06 19828 TMT1-6 116.23 99.601 130.56 151.08 110.2 125.48 127.14 120.03 123 152 116 123 131 116 1 1 1 1 1 1 15522 725 1324 731 1127 1475 1475 1 AGILFEDIFDVK Acetyl (Protein N-term) 1407.7286 0.72858275 1266 P52434-2;P52434;P52434-4 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 0 1 0 0 0 5 0 1 108.31 108.31 2 7.0519E-06 33752 TMT1-4 86.275 59.677 7.3947 14.273 7.4522 6.9624 12.998 8.1571 7 14 8 7 13 8 2 2 2 2 2 2 1913.8 726 1266 732 1128 1476;1477 1476 2 AGIPVYAWK Unmodified 1003.5491 0.54910224 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 0 9 0 1 61.477 61.477 2 0.00023026 16304 TMT1-8 138.85 83.478 153.31 237.74 181.21 185.23 95.955 308.53 145 236 189 181 110 292 1 1 1 1 1 1 26361 727 864 733 1129 1478 1478 1 AGIQTEEHPNPGKR Unmodified 1532.7696 0.76955314 2253 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L yes yes 0 0 0 0 1 5 0 1 28.329 28.329 4 0.0039639 5448 TMT1-4 61.11 48.01 46.834 43.208 26.903 36.955 41.988 68.092 44 44 29 36 44 65 1 1 1 1 1 1 1297.9 728 2253 734 1130 1479 1479 1 AGISEAQLTDAETSK Unmodified 1519.7366 0.73658126 1103 P42768 WAS Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 0 4 0 1 49.911 49.911 3 1.2355E-19 14243 TMT1-3 122.93 101.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 729 1103 735 1131 1480 1480 1 AGISFIIK Unmodified 847.51674 0.51673948 1502 P78347-2;P78347-4;P78347-3;P78347;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 0 9 0 1 63.452 63.452 2 0.0067468 17073 TMT1-8 98.523 31.491 146.81 135.31 97.281 94.846 111.52 158.85 138 138 102 94 116 152 1 1 1 1 1 1 7773.4 730 1502 736 1132 1481 1481 1 AGITTIEAVK Acetyl (N-term) 1043.5863 0.58627561 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 1 0 0 0 0 2.67 1.25 1 1 1 64.204 64.204 2 1.7569E-08 19930 TMT1-3 69.954 49.624 2827.6 3606.2 3216 2685.6 3461.4 3560.8 2670 3619 3296 2692 3544 3433 6 6 6 6 6 6 1095200 731 519;520;521 737 1133;1134;1135 1482;1483;1484;1485;1486;1487 1487 6 AGITTIEAVKR Acetyl (N-term) 1199.6874 0.68738664 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 1 0 0 0 1 6 0.816 1 1 1 53.214 53.214 2 1.9424E-22 15364 TMT1-4 123.21 90.368 933.63 1743 1567.7 1169.2 1268.5 2008.4 887 1722 1598 1177 1330 1918 3 3 3 3 3 3 371690 732 519;520;521 738 1136;1137;1138 1488;1489;1490;1491 1489 4 AGKDLVSSLTSGLLTIGDR Unmodified 1902.0422 0.042205751 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 9 0 1 77.728 77.728 3 0.014665 22751 TMT1-8 43.476 21.603 54.254 42.442 42.806 44.482 56.3 67.683 51 44 44 44 58 65 1 1 1 1 1 1 7060.1 733 1283 739 1139 1492 1492 1 AGKEPGLQIWR Unmodified 1253.6881 0.68805534 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 8.5 0.5 1 1 48.313 48.313 3 0.0024939 11112 TMT1-8 71.219 47.614 1026.3 1462.1 1198.8 952.68 1279.2 1802.3 970 1458 1233 959 1324 1725 2 2 2 2 2 2 813360 + 734 506 740 1140;1141 1493;1494 1494 2 AGKLDPHLVLDQLR Unmodified 1573.894 0.89402537 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 8 0 2 57.694 57.694 3;4 9.5344E-05 16656 TMT1-7 87.363 60.334 2257.3 2594.8 2175.7 1889.1 1451.9 3226.9 2128 2616 2243 1872 1577 3066 3 3 3 3 3 3 246280 735 1019;1020 741 1142;1143 1495;1496;1497 1496 3 AGKPVICATQMLESMIK Unmodified 1875.962 0.96204664 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 8.5 0.5 1 1 75.24 75.24 3 9.0363E-20 21564 TMT1-8 131.56 91.278 270.1 367.61 279.04 278.51 346.79 494.32 255 367 291 276 360 473 4 4 4 4 4 4 67603 736 706;707 742 1144;1145 1498;1499;1500;1501 1499 4 AGKPYCQPCFLK Unmodified 1467.7003 0.70027629 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 1 9 0 1 48.405 48.405 3 1.4835E-05 11143 TMT1-8 101.39 64.624 99.913 69.25 100.76 111.05 110.49 167.41 94 73 102 109 116 160 1 1 1 1 1 1 12691 737 165 743 1146 1502 1502 1 AGLAADK Unmodified 644.34934 0.3493398 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 5 0 1 34.109 34.109 2 0.020693 7597 TMT1-4 97.071 34.229 154.36 127.34 97.748 94.233 142.69 135.57 145 131 102 94 145 131 1 1 1 1 1 1 16866 738 1744 744 1147 1503 1503 1 AGLAADKK Unmodified 772.4443 0.44430282 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 1 7 0 1 34.801 34.801 3 0.0055127 7520 TMT1-6 54.549 11.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 739 1744 745 1148 1504 1504 1 AGLECSDIEK Unmodified 1120.507 0.50703901 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 3.5 0.5 1 1 45.223 45.223 2;3 0.00059058 12357 TMT1-3 112.71 26.575 131.36 150.24 157.24 139.25 117.56 167.21 124 152 160 138 124 160 2 2 2 2 2 2 15152 740 214 746 1149;1150 1505;1506 1506 2 AGLELGAEPETIVNSGLISPEGLAIDHIR Unmodified 2970.5662 0.56621546 1749 Q14112-2;Q14112 NID2 Nidogen-2 yes no 0 0 0 0 0 5 0 1 77.255 77.255 4 0.00015154 24665 TMT1-4 50.294 43.137 15.868 29.568 13.015 30.545 20.018 46.333 15 29 15 29 22 44 1 1 1 1 1 1 5928.6 741 1749 747 1151 1507 1507 1 AGLELLSDQGYR Acetyl (Protein N-term) 1362.6779 0.67794416 2703 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 0 1 0 0 0 3 0 1 72.576 72.576 2 0.0046848 24139 TMT1-2 44.318 10.314 23.213 36.147 35.384 28.777 43.134 45.673 22 36 36 29 44 44 1 1 1 1 1 1 5866.9 742 2703 748 1152 1508 1508 1 AGLEVLFASAAPAITCR Acetyl (Protein N-term) 1787.924 0.92400487 2296 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 0 1 0 0 0 7 0 1 97.045 97.045 2 1.3774E-24 31614 TMT1-6 86.288 71.412 20.255 10.111 13.62 18.4 24.56 21.685 19 11 14 18 25 21 2 2 2 2 2 2 7328.4 743 2296 749 1153 1509;1510 1510 2 AGLFSQEQYER Unmodified 1326.6204 0.62042929 2277 Q8WWA1-2;Q8WWA1 TMEM40 Transmembrane protein 40 yes no 0 0 0 0 0 4.5 0.5 1 1 48.328 48.328 2 0.0029774 13372 TMT1-4 91.095 64.402 253.91 257.11 207.85 254.13 183.6 283.65 239 261 218 247 196 271 2 2 2 2 2 2 29481 744 2277 750 1154;1155 1511;1512 1512 2 AGLGSGLSLSGLVHPELSR Unmodified 1849.0058 0.005760665 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 63.649 63.649 3 3.3409E-25 19008 TMT1-7 142.02 124.21 46.435 80.954 61.907 74.786 69.806 90.75 44 80 65 73 73 87 1 1 1 1 1 1 22057 745 1194 751 1156 1513 1513 1 AGLLAGDR Unmodified 771.4239 0.42390173 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 0 5 0 1 39.673 39.673 2 0.006858 9924 TMT1-4 103.91 68.274 322.75 538.15 303.46 344.8 406.43 465.97 305 531 326 339 419 448 1 1 1 1 1 1 38228 746 104 752 1157 1514 1514 1 AGLLALEFYTPEAFNWR Unmodified 1997.0047 0.0046980325 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 9 0 1 89.443 89.443 3 1.9467E-08 27195 TMT1-8 86.378 62.546 7.2678 22.554 21.76 14.693 21.553 22.837 7 22 22 15 22 22 1 1 1 1 1 1 7000.8 747 2782 753 1158 1515 1515 1 AGLLFIFNFHPSK Unmodified 1489.8082 0.80817048 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 9 0 1 76.41 76.41 3 0.00024886 22200 TMT1-8 81.431 52.455 38.105 43.392 51.146 27.846 42.663 60.611 36 44 51 29 44 58 1 1 1 1 1 1 3957.1 748 1583 754 1159 1516 1516 1 AGLLQSVEAEKDK Unmodified 1386.7355 0.73545904 2819 Q9P1Z2-2;Q9P1Z2-3;Q9P1Z2;Q9P1Z2-4 CALCOCO1 Calcium-binding and coiled-coil domain-containing protein 1 yes no 0 0 0 0 1 6 0 1 54.262 54.262 3 0.0059746 15843 TMT1-5 65.472 35.034 91.998 138.79 109.7 157.56 108.35 167.47 87 138 116 152 116 160 1 1 1 1 1 1 10649 749 2819 755 1160 1517 1517 1 AGLNSLEAVK Acetyl (Protein N-term) 1042.5659 0.56587452 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 1 0 0 0 3 1.22 1 1 2 62.987 62.987 2 1.9358E-10 19386 TMT1-3 90.657 54.777 6465.5 8596.8 7930.6 6087.5 8370.3 8845.6 6110 8614 8087 6146 8560 8522 8 8 8 8 8 8 1939700 750 1486 756 1161;1162;1163;1164 1518;1519;1520;1521;1522;1523;1524;1525 1522 8 AGLNSLEAVKR Acetyl (Protein N-term) 1198.667 0.66698555 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 1 0 0 1 3 1.63 1 1 1 52.049 52.049 2 9.6828E-08 14845 TMT1-4 80.787 39.213 1612 2010.7 1659.7 1265.5 1318.9 2574.1 1521 2018 1705 1271 1401 2450 4 4 4 4 4 4 555730 751 1486 757 1165;1166;1167 1526;1527;1528;1529 1528 4 AGLNSLEAVKR Unmodified 1156.6564 0.65642086 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 6 0 1 56.878 56.878 3 0.030708 16840 TMT1-5 53.569 21.698 170.08 140.29 150.82 98.192 228.89 148.04 160 145 152 102 228 145 1 1 1 1 1 1 28395 752 1486 757 1168 1530 1530 1 AGLQFPVGR Unmodified 943.52395 0.52395013 612;732;2343;2134;611 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2;P16104;Q8IUE6;Q93077;Q71UI9;P0C0S5;Q71UI9-2 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;H2AFX;HIST2H2AB;HIST1H2AC;H2AFV;H2AFZ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A.V;Histone H2A.Z no no 0 0 0 0 0 6.5 3.2 1 2 1 51.349 51.349 2;3 1.6267E-13 14118 TMT1-7 183.9 121.43 10166 16304 10389 13972 16633 16965 9609 16131 11128 13636 17072 16360 8 8 8 8 8 8 4007300 753 612;732;2134;2343;611 758 1169;1170;1171;1172 1531;1532;1533;1534;1535;1536;1537;1538 1534 8 AGLQVYNK Unmodified 891.48142 0.48141661 696 P13987;P13987-2 CD59 CD59 glycoprotein yes no 0 0 0 0 0 7 0 1 44.544 44.544 2 0.0033216 11380 TMT1-6 132.09 87.483 108.3 99.416 108.26 71.076 120.2 151.14 102 102 109 73 123 145 1 1 1 1 1 1 10510 754 696 759 1173 1539 1539 1 AGLRPASCGPHK Unmodified 1249.635 0.63497391 1201 P49767 VEGFC Vascular endothelial growth factor C yes yes 0 0 0 0 1 8 0 1 28.213 28.213 4 0.015772 5132 TMT1-7 55.314 21.428 46.917 34.804 20.15 29.838 35.002 37.377 44 36 22 29 36 36 1 1 1 1 1 1 1380.1 755 1201 760 1174 1540 1540 1 AGLVDDFEK Unmodified 992.48148 0.48147619 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 4 0 2 56.234 56.234 2;3 0.00036679 16701 TMT1-3 110.87 67.625 323.41 413.71 298.05 317.9 284.55 395.89 305 414 313 312 299 379 2 2 2 2 2 2 99075 756 316 761 1175;1176 1541;1542 1542 2 AGLVGPEFHEK Unmodified 1182.6033 0.60332266 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5.5 0.5 1 1 44.389 44.389 3 1.4877E-05 11793 TMT1-4 91.313 52.291 91.635 184.19 132.38 121.77 253.9 180.37 87 181 138 123 254 176 1 1 1 1 1 1 21866 757 1833 762 1177;1178 1543;1544 1543 2 AGLVIGK Unmodified 656.42211 0.42211082 2361;2334 Q96AE4;Q96AE4-2;Q92945 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 no no 0 0 0 0 0 8 0 1 48.601 48.601 2 0.032708 13079 TMT1-7 89.457 44.511 259.54 729.84 484.2 335.56 382.97 643.6 248 710 503 340 402 614 1 1 1 1 1 1 40754 758 2361;2334 763 1179 1545 1545 1 AGMSAEQAQGLLEK Unmodified 1431.7028 0.70277871 2969 Q9Y2Q3;Q9Y2Q3-3;Q9Y2Q3-2;Q9Y2Q3-4 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 5.5 0.5 1 1 55.324 55.324 3 4.1656E-05 16226 TMT1-5 90.367 62.006 246.09 371.35 343.22 219.78 302.68 395.38 233 370 348 225 312 379 2 2 2 2 2 2 34040 759 2969 764 1180;1181 1546;1547 1547 2 AGMSSLKG Unmodified 749.37417 0.37417435 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 1 8 0 1 40.524 40.524 2 0.0018989 9841 TMT1-7 87.323 42.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 760 1068 765 1182 1548 1548 1 AGMTHIVR Unmodified 883.46981 0.46980607 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 7 0 1 30.084 30.084 3 0.03851 5768 TMT1-6 51.346 31.709 38.133 27.281 60.044 19.811 34.913 53.37 36 29 58 22 36 51 1 1 1 1 1 1 2896.3 761 1061 766 1183 1549 1549 1 AGNASKDEIDSAVK Unmodified 1403.6892 0.68923713 860 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 0 0 0 0 1 4.5 0.5 1 1 41.191 41.191 3 9.8656E-05 10511 TMT1-4 75.911 69.224 122.71 135.54 180.26 153.4 106.16 236.82 116 138 181 152 116 225 1 1 1 1 1 1 12965 762 860 767 1184;1185 1550;1551 1551 2 AGNELLESSAGDDASSLR Unmodified 1790.8282 0.82824981 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 2 0 1 51.484 51.484 3 0.00015068 15502 TMT1-1 70.986 51.742 30.812 35.878 20.845 14.609 28.886 22.628 29 36 22 15 29 22 1 1 1 1 1 1 4715.7 763 2935 768 1186 1552 1552 1 AGNILLTEPGQVK Unmodified 1338.7507 0.75071518 2630;2082 Q9H2K8;Q7L7X3;Q7L7X3-3 TAOK3;TAOK1 Serine/threonine-protein kinase TAO3;Serine/threonine-protein kinase TAO1 no no 0 0 0 0 0 6 0 1 56.484 56.484 2 0.013614 16706 TMT1-5 66.486 43.588 54.041 49.403 72.805 66.094 32.528 60.9 51 51 73 65 36 58 1 1 1 1 1 1 8287.1 764 2630;2082 769 1187 1553 1553 1 AGNLGGGVVTIER Unmodified 1241.6728 0.67279921 1017 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 0 5.5 0.5 1 1 47.535 47.535 2;3 0.0023145 13092 TMT1-4 68.033 32.522 84.253 146.21 142.88 107.96 141.27 188.91 80 145 145 109 146 181 2 2 2 2 2 2 50023 765 1017 770 1188;1189 1554;1555 1554 2 AGNNMLLVGVHGPR Unmodified 1433.7562 0.75615168 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 3.56 1 1 1 45.993 45.993 3 1.4466E-07 11882 TMT1-7 110.58 98.663 2267.7 3301.9 3435.9 2790.1 3308 4140.8 2148 3301 3484 2797 3421 3973 4 4 4 4 4 4 387490 766 831 771 1190;1191;1192 1556;1557;1558;1559 1558 4 AGNNMLLVGVHGPR Oxidation (M) 1449.7511 0.7510663 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 8.5 0.5 1 1 39.87 39.87 3 2.4871E-05 9630 TMT1-7 99.531 82.414 200.18 230.32 245.09 140.32 188.91 281.36 189 233 246 145 196 269 2 2 2 2 2 2 61019 767 831 771 1193;1194 1560;1561;1562 1561 155 3 AGNVLMTLEGDIR Unmodified 1387.7129 0.71294946 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 69.998 69.998 2 0.0098825 21808 TMT1-4 70.412 48.539 46.469 81.048 56.116 34.636 72.715 59.753 44 80 58 36 73 58 1 1 1 1 1 1 8317.2 768 325 772 1195 1563 1563 1 AGNYEEALQLYQHAVQYFLHVVK Unmodified 2719.3758 0.37583591 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 0 9 0 1 90.435 90.435 4 2.4726E-16 27509 TMT1-8 94.837 79.245 60.924 125.93 113.41 95.086 105.76 113.18 58 124 116 95 109 109 3 3 3 3 3 3 9431.7 769 267 773 1196 1564;1565;1566 1564 3 AGPESDAQYQFTGIK Unmodified 1610.7577 0.75765105 2423 Q96IX5 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 0 0 0 0 0 5 0 1 54.798 54.798 2 2.6499E-14 15919 TMT1-4 134.56 106.39 38.006 65.783 48.737 51.786 55.964 67.693 36 65 51 51 58 65 1 1 1 1 1 1 11254 770 2423 774 1197 1567 1567 1 AGPFDEFQIATMLK Unmodified 1566.7752 0.77521537 2825 Q9P289;Q9P289-2;Q9P289-3 STK26 Serine/threonine-protein kinase 26 yes no 0 0 0 0 0 7 0 2 80.9 80.9 3 1.1054E-08 25711 TMT1-6 99.011 85.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 771 2825 775 1198;1199 1568;1569 1569 2 AGPGSPLR Unmodified 753.41334 0.41333704 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6 0 1 31.398 31.398 2 0.019801 6774 TMT1-5 89.123 25.821 130.76 136.53 88.639 94.692 147.1 219.66 123 138 94 94 152 210 1 1 1 1 1 1 8697.5 772 936 776 1200 1570 1570 1 AGPGVVR Unmodified 654.38131 0.38130863 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 5 0 1 27.579 27.579 2 0.012184 5155 TMT1-4 103.7 48.241 77.477 86.171 70.14 73.749 98.898 128.3 73 87 73 73 102 123 1 1 1 1 1 1 7711.4 773 1868 777 1201 1571 1571 1 AGPHCPTAQLIATLK Unmodified 1576.8395 0.83954696 449;636 P02776;P10720 PF4;PF4V1 Platelet factor 4;Platelet factor 4, short form;Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) no no 0 0 0 0 0 7.73 2.18 1 6 4 53.434 53.434 3;4 2.1833E-34 15169 TMT1-7 159.13 111.21 6511.3 6709.4 7607.6 7106.1 8876.5 11629 6142 6838 7726 7069 9180 11147 9 9 9 9 9 9 1221500 774 449;636 778 1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212 1572;1573;1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585 1577 14 AGPLAGGVTTFVALYDYESR Unmodified 2086.0371 0.037120373 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 7 0 1 81.907 81.907 3 9.0741E-25 25977 TMT1-6 141.6 130.49 84.375 107.7 154.92 84.022 97.62 151.78 80 109 153 87 102 145 2 2 2 2 2 2 52831 775 673 779 1213 1586;1587 1586 2 AGPVQVLIVK Unmodified 1022.6488 0.64881629 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 9 0 1 60.192 60.192 2 0.00061748 15806 TMT1-8 109.21 50.637 68.929 79.304 69.881 89.768 61.547 67.534 65 80 73 87 65 65 1 1 1 1 1 1 5939.6 776 2284 780 1214 1588 1588 1 AGQATEGHCPR Unmodified 1182.52 0.52000373 1345 P57772-2;P57772 EEFSEC Selenocysteine-specific elongation factor yes no 0 0 0 0 0 3 0 1 18.8 18.8 3 0.0033844 3273 TMT1-2 73.632 46.925 2.101 7.2832 1.3832 7.4814 4.6346 7.3297 2 7 2 7 5 7 1 1 1 1 1 1 515.28 777 1345 781 1215 1589 1589 1 AGQAVDDFIEK Unmodified 1191.5772 0.57716749 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 3 0.816 1 1 1 57.3 57.3 3 4.6112E-05 16937 TMT1-3 106.49 55.224 724.67 717.49 1129.3 585.53 912.96 1019.7 685 738 1111 613 932 981 4 4 4 4 4 4 132340 778 1260 782 1216;1217;1218 1590;1591;1592;1593 1592 4 AGQGNVGLALLWSEK Unmodified 1541.8202 0.82019173 1975 Q5T440 IBA57 Putative transferase CAF17, mitochondrial yes yes 0 0 0 0 0 8 0 1 71.682 71.682 3 1.5984E-10 22151 TMT1-7 118.52 85.576 61.483 72.443 64.817 19.226 50.902 45.451 58 73 65 22 51 44 1 1 1 1 1 1 5355.3 779 1975 783 1219 1594 1594 1 AGQLLSELFTNR Unmodified 1347.7147 0.71466402 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 8 0 1 74.81 74.81 2 5.8408E-05 23349 TMT1-7 109.16 0 53.956 88.023 54.234 66.641 62.317 76.04 51 87 58 65 65 73 1 1 1 1 1 1 11983 780 853 784 1220 1595 1595 1 AGQMVTVWAAGAGVAHSPPSTLVWK Unmodified 2520.2947 0.29474882 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 9 0 1 70.257 70.257 4 2.5919E-05 19752 TMT1-8 55.994 28.274 53.775 126.37 52.29 58.655 86.269 59.366 51 123 58 58 87 58 1 1 1 1 1 1 7079.1 781 1577 785 1221 1596 1596 1 AGQPLQLLDASWYLPK Unmodified 1798.9618 0.96177059 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 8.67 0.471 1 2 82.677 82.677 2;3 4.1907E-07 26465 TMT1-7 101.42 67.449 170.19 208.77 254.51 155.55 221.25 202.62 161 211 254 160 225 196 3 3 3 3 3 3 30839 782 883 786 1222;1223;1224 1597;1598;1599;1600 1597 4 AGQSAAGAAPGGGVDTR Unmodified 1441.691 0.69096847 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.5 0.957 1 2 2 1 30.391 30.391 2;3 1.1798E-73 7461 TMT1-2 235.02 175.09 560.37 593.8 534.76 467.02 555.22 630.15 528 602 549 466 572 606 7 7 7 7 7 7 1001100 783 831 787 1225;1226;1227;1228;1229;1230 1601;1602;1603;1604;1605;1606;1607;1608 1604 8 AGQTVTIWAANAGVTASPPTDLIWK Unmodified 2567.3384 0.33838777 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 9 0 1 80.69 80.69 4 2.3011E-11 23875 TMT1-8 79.236 61.747 123.64 197.66 152.35 185.93 149.94 228.11 117 196 160 181 159 218 2 2 2 2 2 2 23729 784 816 788 1231 1609;1610 1610 2 AGQVFLEELGNHK Unmodified 1440.7361 0.73612775 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 0 6 0 1 57.17 57.17 3 1.091E-06 16978 TMT1-5 93.494 65.167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 785 599 789 1232 1611 1611 1 AGQVVTIWAAGAGATHSPPTDLVWK Unmodified 2532.3125 0.31250737 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 9 0 1 70.84 70.84 3 2.8872E-16 19991 TMT1-8 86.946 70.85 30.963 13.634 14.253 22.512 36.386 37.338 29 15 15 22 37 36 1 1 1 1 1 1 5768.5 786 429 790 1233 1612 1612 1 AGSATVLSGSIAGLEGGSQLALR Unmodified 2114.1331 0.13314602 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 7 0 1 69.167 69.167 3 5.6264E-24 21068 TMT1-6 128.67 115.11 46.764 58.124 26 37.157 34.115 53.393 44 58 29 36 36 51 1 1 1 1 1 1 11218 787 2306 791 1234 1613 1613 1 AGSIVLK Unmodified 686.43268 0.4326755 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 0 8 0 1 46.738 46.738 2 0.011071 12246 TMT1-7 105.39 21.776 2083.6 3118.1 2442.7 2035.8 2743.2 3442.7 1970 3101 2524 2043 2825 3303 2 2 2 2 2 2 334840 788 150 792 1235 1614;1615 1614 2 AGSPSPQPSGELPR Unmodified 1378.6841 0.68409218 2309 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes yes 0 0 0 0 0 4 0 1 36.996 36.996 2 1.5012E-12 9133 TMT1-3 119.21 49.492 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 789 2309 793 1236 1616 1616 1 AGSSSLEAVR Acetyl (N-term) 1017.5091 0.50908792 594 P09493-5 yes yes 1 0 0 0 0 2 0 1 40.857 40.857 2 0.0019432 11230 TMT1-1 90.64 49.862 99.628 131.05 96.384 126.05 140.67 151.62 94 131 102 123 145 146 2 2 2 2 2 2 46964 790 594 794 1237 1617;1618 1617 2 AGSSSTPGEQPNNHR Unmodified 1537.6869 0.68694572 3080 yes no 0 0 0 0 0 2 0 1 36.198 36.198 3 0.0049407 9478 TMT1-1 57.136 27.808 77.39 85.929 84.991 80.761 85.765 44.457 73 87 87 80 87 44 1 1 1 1 1 1 13766 + 791 3080 795 1238 1619 1619 1 AGSSTPGDAPPAVAEVQGR Unmodified 1765.8595 0.85949036 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 3 0 1 42.38 42.38 3 0.00070466 12281 TMT1-2 55.094 28.947 46.778 34.419 43.706 35.943 42.548 53.152 44 36 44 36 44 51 1 1 1 1 1 1 6622 792 2100 796 1239 1620 1620 1 AGSTALYWACHGGHK Unmodified 1614.7361 0.73614452 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 8 0 1 41.84 41.84 4 5.1231E-06 10348 TMT1-7 97.716 84.037 190.72 308.34 326.17 159.34 257.69 324.17 181 307 326 168 264 311 1 1 1 1 1 1 24376 793 2324 797 1240 1621 1621 1 AGSVADSDAVVK Acetyl (Protein N-term) 1159.5721 0.57208211 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 1 0 0 0 2 0 1 50.267 50.267 2 3.4154E-14 14959 TMT1-1 90.108 41.825 200.14 272.32 215.16 245.6 207.06 281.91 189 272 225 240 218 270 2 2 2 2 2 2 72298 794 1934 798 1241 1622;1623 1622 2 AGSVPSLAAGLLFGSLAGLGAYQLSQDPR Unmodified 2815.4868 0.48684292 2815 Q9P0S9 TMEM14C Transmembrane protein 14C yes yes 0 0 0 0 0 9 0 1 100.27 100.27 4 5.8617E-11 31131 TMT1-8 72.082 57.259 0 15.589 22.215 14.666 21.554 22.837 0 15 22 15 22 22 0 1 1 1 1 1 3364 795 2815 799 1242 1624 1624 1 AGSVSLDSVLADVR Unmodified 1387.7307 0.73070802 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 5 0 1 67.263 67.263 2 1.2682E-09 20741 TMT1-4 120.86 77.086 77.496 102.41 53.243 66.847 54.466 91.188 73 102 58 65 58 87 1 1 1 1 1 1 18595 796 356 800 1243 1625 1625 1 AGTGLVAGEVVVDALPYFDQGYEAPGVR Acetyl (Protein N-term) 2891.4341 0.43413865 312 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 0 1 0 0 0 4 0 1 98.682 98.682 3 4.8243E-08 31408 TMT1-3 45.862 31.847 0 3.192 0 0 0 3.198 0 3 0 0 0 3 0 1 0 0 0 1 740.26 797 312 801 1244 1626 1626 1 AGTGVDNVDLEAATR Unmodified 1487.7216 0.72159989 159 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 0 3 0 1 47.565 47.565 3 0.00017728 14304 TMT1-2 59.728 36.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 798 159 802 1245 1627 1627 1 AGTLDLDK Acetyl (Protein N-term) 873.44436 0.4443624 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 1 0 0 0 2 0 1 58.323 58.323 2 0.00019025 18197 TMT1-1 93.162 41.732 146.33 190.09 132.02 115.68 172.06 134.74 138 190 138 116 174 131 1 1 1 1 1 1 23229 799 2085 803 1246 1628 1628 1 AGTLDLDKGCTVEELLR Acetyl (N-term) 1930.967 0.9669919 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 1 0 0 0 1 4 0 1 74.126 74.126 3 0.0092676 23817 TMT1-3 66.673 47.283 138.59 211.55 152.09 171.47 106.37 236.81 131 210 160 167 117 225 2 2 2 2 2 2 37071 800 2085 804 1247 1629;1630 1630 2 AGTLDLSLTVQGK Unmodified 1301.7191 0.7190807 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6.75 0.433 1 3 62.485 62.485 2;3 4.6127E-59 18238 TMT1-6 234.9 163.45 2243 3471.5 2935.9 2297.9 3632.7 3568.7 2123 3451 3011 2325 3691 3445 10 10 10 10 10 10 759920 + 801 32;554 805 1248;1249;1250;1251 1631;1632;1633;1634;1635;1636;1637;1638;1639;1640 1632 10 AGTLSITEFADMLSGNAGGFR Unmodified 2114.0103 0.010253695 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 87.535 87.535 3 6.0749E-18 28161 TMT1-7 117.29 94.648 15.917 29.705 4.6643 23.508 13.818 23.058 15 29 7 22 15 22 1 1 1 1 1 1 11759 802 1833 806 1252 1641 1641 1 AGTLTVEELGATLTSLLAQAQAQAR Unmodified 2512.3497 0.34968074 1346 P58107 EPPK1 Epiplakin yes no 0 0 0 0 0 9 0 1 101.89 101.89 3 5.0829E-06 31740 TMT1-8 59.197 35.397 0 23.172 14.147 15.552 0 15.99 0 22 15 15 0 15 0 1 1 1 0 1 2197.1 803 1346 807 1253 1642 1642 1 AGTQIENIDEDFRDGLK Unmodified 1919.9225 0.92248455 195 O43707;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 3.5 0.5 2 2 59.832 59.832 3;4 2.1376E-24 18072 TMT1-3 148.97 118.84 327.95 563.23 309.53 295.58 389.01 490.99 310 555 331 294 401 471 3 3 3 3 3 3 97097 804 195 808 1254;1255;1256;1257 1643;1644;1645;1646 1645 4 AGTQIENIEEDFR Unmodified 1520.7107 0.71070086 672;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;P35609-2;P35609 ACTN1;ACTN3;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-2 no no 0 0 0 0 0 2.5 0.5 1 1 59.909 59.909 2;3 8.2355E-13 18840 TMT1-1 162.31 79.557 138.66 173.97 172.1 137.22 178.44 133.49 131 175 175 138 181 130 3 3 3 3 3 3 45937 805 672;1022 809 1258;1259 1647;1648;1649 1647 3 AGTQIENIEEDFRDGLK Unmodified 1933.9381 0.93813461 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 3.2 0.748 1 2 2 66.158 66.158 3;4 1.0126E-18 20544 TMT1-3 135.55 108.33 2357.8 3015.2 2781.4 2554.9 2602 2991.6 2227 3027 2854 2534 2698 2876 10 10 10 10 10 10 565430 806 672 810 1260;1261;1262;1263;1264 1650;1651;1652;1653;1654;1655;1656;1657;1658;1659 1657 10 AGTQYLLR Unmodified 920.50797 0.50796571 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 6 0 1 43.807 43.807 2 0.018154 11705 TMT1-5 90.308 10.84 250.85 332.41 298.29 235.87 344.59 432.56 237 333 305 238 354 415 1 1 1 1 1 1 31171 807 1222 811 1265 1660 1660 1 AGTVVLDDVELR Acetyl (Protein N-term) 1327.6983 0.69834526 882 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 1 0 0 0 2 0 1 72.272 72.272 2 0.00023788 23423 TMT1-1 61.353 47.584 7.511 0 0 0 7.322 0 7 0 0 0 7 0 1 0 0 0 1 0 5501.6 808 882 812 1266 1661 1661 1 AGVAPLQVK Unmodified 881.53345 0.53345218 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.92 1 1 2 47.739 47.739 2;3 2.4355E-09 12621 TMT1-6 177.65 118.45 3951.6 5459.1 5338.2 3844.3 3762 13968 3738 5465 5413 3873 4224 13204 6 6 6 6 6 6 1629200 809 831 813 1267;1268;1269;1270 1662;1663;1664;1665;1666;1667 1663 6 AGVDTSPDTQK Unmodified 1117.5251 0.52513192 2698 Q9NNW7-2;Q9NNW7;Q9NNW7-4;Q9NNW7-3 TXNRD2 Thioredoxin reductase 2, mitochondrial yes no 0 0 0 0 0 4 0 1 35.138 35.138 3 0.0051618 8392 TMT1-3 49.5 33.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 810 2698 814 1271 1668 1668 1 AGVETTKPSK Unmodified 1016.5502 0.55022446 22 P0DOX8;B9A064;P0CG04 IGLL5;IGLC1 Immunoglobulin lambda-like polypeptide 5;Ig lambda-1 chain C regions yes no 0 0 0 0 1 7 0 1 34.222 34.222 3 0.01347 7296 TMT1-6 66.486 33.88 138.77 180.74 148.47 99.984 141.1 174 131 181 152 102 145 167 1 1 1 1 1 1 6091.3 811 22 815 1272 1669 1669 1 AGVETTTPSK Unmodified 989.50294 0.50293991 620 P0DOY3;P0DOY2 yes no 0 0 0 0 0 5 0 1 35.352 35.352 3 0.0004327 8180 TMT1-4 100.02 51.926 217.11 308.37 217.76 209.56 255.52 259.21 205 307 228 208 262 250 1 1 1 1 1 1 25660 812 620 816 1273 1670 1670 1 AGVLAGHDNR Unmodified 1008.5101 0.51009098 1454;1453;2674 P62879;P62879-2;Q9HAV0;P62873;P62873-2 GNB2;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 0 5 0.816 1 1 1 27.156 27.156 3 2.5968E-07 5000 TMT1-4 162.64 127.83 330.88 383.96 328.65 228.96 325.27 425.65 312 387 336 233 335 408 4 4 4 4 4 4 70895 813 1454;2674;1453 817 1274;1275;1276 1671;1672;1673;1674 1672 4 AGVLAHLEEER Unmodified 1222.6306 0.63060004 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 4.14 2.23 1 1 1 1 1 1 1 45.683 45.683 3 8.9141E-13 12441 TMT1-3 176.95 146.38 3004.5 4487.1 3398.4 2510.1 3731.3 3093.7 2840 4461 3507 2546 3779 3002 12 12 12 12 12 12 3139200 814 1019;1020 818 1277;1278;1279;1280;1281;1282;1283 1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687 1682 13 AGVLAHLEEERDLK Unmodified 1578.8366 0.83657007 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 5 0 1 49.445 49.445 4 2.2522E-07 13740 TMT1-4 108.59 74.709 265.01 184.01 207.75 159.21 174.85 452.32 249 193 210 160 189 429 1 1 1 1 1 1 51828 815 1019;1020 819 1284 1688 1688 1 AGVLSQADYLNLVQCETLEDLK Unmodified 2478.2312 0.23120509 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 82.224 82.224 3;4 2.8379E-14 26829 TMT1-5 104.18 81.082 46.256 96.645 78.7 65.319 55.049 76.247 44 95 81 65 58 73 2 2 2 2 2 2 8767.7 816 1391 820 1285;1286 1689;1690 1690 2 AGVNFSEFTGVWK Unmodified 1440.7038 0.70376498 264 O75340-2;O75340 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 0 8.5 0.5 1 1 72.427 72.427 3 9.0943E-05 22436 TMT1-7 93.348 80.581 106.62 191.7 132.09 116.41 133.27 166.76 101 189 138 116 138 160 2 2 2 2 2 2 29256 817 264 821 1287;1288 1691;1692 1691 2 AGVNTVTTLVENK Unmodified 1344.7249 0.72489436 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 6 0 1 58.073 58.073 2 1.1854E-07 17382 TMT1-5 120.87 65.471 30.797 20.725 36.261 29.015 27.71 37.585 29 22 36 29 29 36 1 1 1 1 1 1 5051.3 818 1438 822 1289 1693 1693 1 AGVSFSGHR Acetyl (N-term) 958.46208 0.46207815 1897 Q16643;Q16643-3 DBN1 Drebrin yes no 1 0 0 0 0 3 0 1 32.396 32.396 2 0.00017729 8252 TMT1-2 110.31 72.176 38.201 43.658 34.837 29.243 20.078 46.331 36 44 36 29 22 44 1 1 1 1 1 1 25140 819 1897 823 1290 1694 1694 1 AGVVGPELHEQLLSAEK Unmodified 1775.9418 0.94176342 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 54.162 54.162 3 3.7135E-08 15682 TMT1-4 102.78 82.191 99.167 199.93 115.37 117.27 140.56 166.55 94 196 123 116 145 160 1 1 1 1 1 1 27603 820 1833 824 1291 1695 1695 1 AGVVTPGITEDQLWR Unmodified 1640.8522 0.85222014 2561 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 0 5.5 0.5 1 1 63.529 63.529 3 0.004677 19391 TMT1-5 57.794 34.418 139.14 120.27 136.88 101.53 95.474 160.37 131 124 138 102 101 153 2 2 2 2 2 2 37490 821 2561 825 1292;1293 1696;1697 1697 2 AGVYPER Unmodified 790.39735 0.39735263 1591 Q05193-3;Q05193;Q05193-5;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 0 0 3 0 1 31.64 31.64 2 0.005325 7993 TMT1-2 81.32 46.215 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822 1591 826 1294 1698 1698 1 AGWNAYIDNLMADGTCQDAAIVGYK Acetyl (Protein N-term);Oxidation (M) 2774.2316 0.23161579 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 1 1 0 0 5 0 1 86.331 86.331 3 9.6764E-11 28272 TMT1-4 49.902 41.301 68.672 125 74.405 96.743 83.198 97.83 65 123 80 94 87 94 1 1 1 1 1 1 59340 823 540 827 1295 1699 1699 96 1 AGWNAYIDNLMADGTCQDAAIVGYK Acetyl (N-term) 2758.2367 0.23670117 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 1 0 0 0 0 6 0 1 96.22 96.22 3 3.5619E-09 31865 TMT1-5 40.669 24.969 76.979 123.64 122.14 70.494 107.15 105.67 73 123 123 73 109 102 1 1 1 1 1 1 49541 824 540 827 1296 1700 1700 1 AGYTDKVVIGMDVAASEFFR Unmodified 2175.067 0.067040293 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 7 0 1 80.782 80.782 4 0.0039061 25658 TMT1-6 49.973 46.479 23.152 59.722 25.633 45.915 34.519 29.929 22 58 29 44 36 29 1 1 1 1 1 1 4004.6 825 514 828 1297 1701 1701 1 AHAFAVQQK Unmodified 998.52976 0.52976379 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 33.585 33.585 3 0.00034431 7127 TMT1-7 113.41 79.861 153.87 213.41 106.76 116.02 234.34 178.8 145 212 116 116 235 174 1 1 1 1 1 1 14739 826 1833 829 1298 1702 1702 1 AHAHLDTGR Unmodified 976.48388 0.48387622 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 4 0 1 19.247 19.247 3 0.013774 3531 TMT1-3 62.823 45.985 2.1132 2.9999 2.9692 1.9333 4.0259 2.0171 2 3 3 2 4 2 1 1 1 1 1 1 323.76 827 1792 830 1299 1703 1703 1 AHATGAGPAGR Unmodified 964.48388 0.48387622 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 2.63 1 1 1 1 1 1 16.754 16.754 3 3.749E-17 3185 TMT1-7 180.09 142.28 120.82 149.35 126.83 121.4 122.7 133.01 114 150 131 120 127 128 15 15 15 14 16 14 53314 828 3010 831 1300;1301;1302;1303;1304;1305 1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719 1712 16 AHCIQQMTSK Unmodified 1202.5536 0.55361205 2486 Q99719 SEPT5 Septin-5 yes yes 0 0 0 0 0 8 0 1 35.009 35.009 3 0.034788 7717 TMT1-7 48.998 12.695 57.324 49.361 62.101 38.896 59.698 67.586 54 51 62 40 61 65 1 1 1 1 1 1 9013.4 829 2486 832 1306 1720 1720 1 AHDGGIYAISWSPDSTHLLSASGDK Unmodified 2584.2194 0.21939485 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 7 0.816 1 1 1 60.331 60.331 4 1.3548E-30 18208 TMT1-5 132.26 118.24 414.19 565.32 600.45 383.22 502.31 577.3 392 567 604 392 516 555 4 4 4 4 4 4 88691 830 250 833 1307;1308;1309 1721;1722;1723;1724 1721 4 AHEAQDAGYR Unmodified 1116.4948 0.49483484 1618;741 P16298-2;P16298-3;P16298;P16298-4;P48454-2;P48454;P48454-3;Q08209-3;Q08209-2;Q08209;Q08209-5 PPP3CB;PPP3CC;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform no no 0 0 0 0 0 2 0 1 21.295 21.295 3 0.010833 3739 TMT1-1 63.426 55.122 15.865 29.558 13.683 15.58 0 15.99 15 29 15 15 0 15 1 1 1 1 0 1 3618.4 831 741;1618 834 1310 1725 1725 1 AHECLGEALR Unmodified 1154.5502 0.55024123 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 4 0 1 33.085 33.085 3 0.0055243 7530 TMT1-3 71.524 47.233 122.06 274.03 173.05 153.09 145.46 219.71 116 268 182 152 153 210 2 2 2 2 2 2 35272 832 2309 835 1311 1726;1727 1726 2 AHEEQLK Unmodified 853.42938 0.42938104 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 27.488 27.488 3 0.0018278 6220 TMT1-2 112.37 34.046 216.59 213.91 205.56 173.64 228 194.97 204 218 210 174 232 189 2 2 2 2 2 2 20600 833 1833 836 1312;1313 1728;1729 1729 2 AHEPTYFTVDCAEAGQGDVSIGIK Unmodified 2564.1853 0.18531753 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.67 0.471 3 6 60.826 60.826 3;4 1.3324E-50 17785 TMT1-4 170.11 149.45 754.01 1016.6 814.11 745.76 889.45 941.48 712 1016 843 742 914 907 14 14 14 14 14 14 135170 834 831 837 1314;1315;1316;1317;1318;1319;1320;1321;1322 1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746 1739 17 AHESVVK Unmodified 768.413 0.41300269 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 5.33 1.25 1 1 1 26.649 26.649 3 0.0043736 4529 TMT1-6 95.62 47.714 292.03 391.36 361.22 318.1 422.62 304.54 276 392 370 318 428 297 5 5 5 5 5 5 27515 835 677 838 1323;1324;1325 1747;1748;1749;1750;1751 1750 5 AHGFTFTR Unmodified 935.46135 0.46134987 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 8 0 1 35.251 35.251 3 0.0025369 7751 TMT1-7 95.741 68.604 61.384 94.833 62.427 42.745 86.451 75.351 58 94 65 44 87 73 1 1 1 1 1 1 10991 836 566 839 1326 1752 1752 1 AHGGYSVFAGVGER Unmodified 1405.6739 0.67386184 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6.33 1.25 1 1 1 41.662 41.662 2;3 1.6918E-13 10805 TMT1-5 122.18 87.8 261.75 324.59 276.47 200.68 251.04 371.27 247 326 283 203 261 355 2 2 2 2 2 2 90272 837 508 840 1327;1328;1329 1753;1754;1755 1754 3 AHGLLAEENR Unmodified 1108.5625 0.56252048 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 3 0 1 30.788 30.788 3 0.0066586 7654 TMT1-2 68.525 43.399 85.29 62.751 39.332 91.616 60.106 107.02 80 65 44 87 65 102 1 1 1 1 1 1 5302 838 1805 841 1330 1756 1756 1 AHIAQLCEK Unmodified 1068.5386 0.53861391 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 6 0 1 36.92 36.92 3 0.00040388 8920 TMT1-5 106.68 85.219 323.87 517.89 492.47 355.18 417.76 548.8 307 515 500 359 433 526 2 2 2 2 2 2 105800 839 1540 842 1331 1757;1758 1757 2 AHIVFDFHQAADGIQEQQR Unmodified 2209.0665 0.066463441 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 6 0 1 51.146 51.146 4 4.1116E-07 14615 TMT1-5 87.676 85.214 108.21 130.46 97.364 103.86 96.964 144.34 102 131 102 102 102 138 1 1 1 1 1 1 12541 840 962 843 1332 1759 1759 1 AHLAELQR Unmodified 936.51411 0.51411372 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 5 0 1 31.307 31.307 3 0.00058128 6590 TMT1-4 133.79 90.545 100 99.714 60.222 81.279 136.76 112.29 94 101 65 80 138 109 2 2 2 2 2 2 12569 841 20 844 1333 1760;1761 1760 2 AHLEASAEK Unmodified 954.47706 0.47705951 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 30.47 30.47 3 0.01987 6608 TMT1-3 57.55 31.991 54.181 49.793 48.933 67.084 55.517 60.244 51 51 51 65 58 58 1 1 1 1 1 1 9842.4 842 1138 845 1334 1762 1762 1 AHLILFK Unmodified 840.52216 0.52215921 2663 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 0 0 9 0 1 52.047 52.047 3 0.004279 12575 TMT1-8 90.285 84.182 84.784 101.28 91.623 80.395 84.206 90.339 80 102 94 80 87 87 1 1 1 1 1 1 7874.4 843 2663 846 1335 1763 1763 1 AHLLSAEFGK Unmodified 1071.5713 0.57129425 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 1 49.007 49.007 3 0.00075547 13175 TMT1-6 94.692 59.884 122.76 191.81 124.13 123.13 207.84 179.55 116 190 131 123 210 174 1 1 1 1 1 1 12800 844 651 847 1336 1764 1764 1 AHLVAVFNEYQR Unmodified 1445.7415 0.74154747 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 7.5 0.5 1 1 49.31 49.31 3 1.9326E-05 13258 TMT1-6 104.3 84.535 213.85 344.26 375.05 249.79 291.04 328.55 203 343 377 254 300 316 2 2 2 2 2 2 68181 845 1234 848 1337;1338 1765;1766 1765 2 AHMGMFTELAILYSK Unmodified 1710.8473 0.84733445 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 9 0 1 73.167 73.167 3 1.6133E-05 20918 TMT1-8 79.614 52.645 46.547 65.074 56.685 43.369 71.507 83.24 44 65 58 44 73 80 1 1 1 1 1 1 8248.8 846 1540 849 1339 1767 1767 1 AHPEPGTWDSFLEK Unmodified 1612.7522 0.75217174 617 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2 SULT1A4;SULT1A3 Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 0 0 0 0 0 5 0 1 57.411 57.411 3 0.00011369 16889 TMT1-4 84.759 63.806 68.89 86.75 70.136 74.02 84.5 90.331 65 87 73 73 87 87 1 1 1 1 1 1 14768 847 617 850 1340 1768 1768 1 AHPPELK Unmodified 790.43374 0.43373813 18 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 0 5.5 0.5 1 1 33.374 33.374 3 0.017838 7267 TMT1-4 70.268 24.55 481.52 725.08 510.45 407.6 595.59 600.22 455 720 531 411 607 579 3 3 3 3 3 3 31378 848 18 851 1341;1342 1769;1770;1771 1769 3 AHPPELKK Unmodified 918.5287 0.52870115 18 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 1 7 0 1 33.477 33.477 4 0.033906 7013 TMT1-6 51.346 19.973 153.29 196.69 218.32 111.74 108.33 229.3 145 198 218 116 116 218 1 1 1 1 1 1 5719.1 849 18 852 1343 1772 1772 1 AHQDALPR Unmodified 906.46716 0.46716353 1108 P43155-3;P43155-2;P43155 CRAT Carnitine O-acetyltransferase yes no 0 0 0 0 0 3 0 1 23.393 23.393 3 0.0069899 4737 TMT1-2 50.607 23.605 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 850 1108 853 1344 1773 1773 1 AHQITDESLESTR Unmodified 1485.7059 0.70594983 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 2.5 0.5 1 1 33.878 33.878 3 3.7103E-13 8577 TMT1-1 155.66 138.64 139.41 112.36 99.391 79.218 122.19 112.71 131 116 102 80 124 109 2 2 2 2 2 2 32434 851 45 854 1345;1346 1774;1775 1774 2 AHQITDESLESTRR Unmodified 1641.8071 0.80706086 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 1 3.5 1.12 1 1 1 1 29.612 29.612 4 1.4371E-05 6953 TMT1-1 95.631 77.822 193.89 270.02 186.79 206.1 246.85 303.16 183 269 197 203 255 291 5 5 5 5 5 5 38175 852 45 855 1347;1348;1349;1350 1776;1777;1778;1779;1780 1776 5 AHQLVHEGYK Unmodified 1180.5989 0.59890598 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 0 5.5 0.5 1 1 30.174 30.174 4 0.0022223 6280 TMT1-5 78.655 54.273 192.51 276.81 231.64 234.86 261.27 240.92 182 276 240 232 268 233 3 3 3 3 3 3 14112 853 86 856 1351;1352 1781;1782;1783 1782 3 AHQVVEDGYEFFAK Unmodified 1638.7678 0.7678218 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 5.33 0.471 2 1 58.25 58.25 3;4 2.3003E-10 17303 TMT1-4 121.42 96.626 245.33 329.12 326.49 288.16 264.85 309.04 232 330 333 286 276 297 2 2 2 2 2 2 127570 854 1044;1413;1414 857 1353;1354;1355 1784;1785;1786 1785 3 AHSCPSVWK Unmodified 1070.4967 0.4967491 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 8.5 0.5 1 1 35.858 35.858 3 0.0004565 7901 TMT1-7 104.01 88.474 300.05 350.19 308.97 233.77 306.3 393.14 283 353 316 236 316 377 2 2 2 2 2 2 22976 855 529 858 1356;1357 1787;1788 1787 2 AHSIQIMK Oxidation (M) 942.49569 0.49568646 1568 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 1 0 0 8 0 1 34.791 34.791 3 0.025298 7605 TMT1-7 75.109 47.367 68.396 124.23 121.5 84.98 152.57 73.464 65 123 123 87 152 73 1 1 1 1 1 1 5344.9 856 1568 859 1358 1789 1789 253 1 AHSSMVGVNLPQK Unmodified 1366.7027 0.70271913 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 8.2 0.748 1 2 2 43.543 43.543 3;4 2.1159E-13 10959 TMT1-7 160.67 126.79 1047.4 1536.4 1378.3 1264.4 1628.1 1735.9 991 1532 1416 1260 1669 1672 8 8 8 8 8 8 225600 857 397 860 1359;1360;1361;1362;1363 1790;1791;1792;1793;1794;1795;1796;1797 1792 8 AHSSMVGVNLPQK Oxidation (M) 1382.6976 0.69763375 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 0 8.5 0.5 1 1 38.97 38.97 3 2.2339E-10 9164 TMT1-7 129.74 95.549 108.09 129.04 119.3 147.79 190.43 226.95 102 130 124 145 196 218 2 2 2 2 2 2 26778 858 397 860 1364;1365 1798;1799 1798 44 2 AHTPSVAASSQAR Unmodified 1281.6426 0.64256171 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 5 0 1 24.117 24.117 3 0.0016707 3980 TMT1-4 71.879 63.082 11.691 15.07 6.0971 11.534 6.6522 4.0742 11 15 7 11 7 4 1 1 1 1 1 1 1584.7 859 2223 861 1366 1800 1800 1 AHTSSTQLQEELEK Unmodified 1599.774 0.77402939 3066 Q9Y6Y8-2;Q9Y6Y8 SEC23IP SEC23-interacting protein yes no 0 0 0 0 0 4 0 1 41.333 41.333 3 0.00014252 10869 TMT1-3 82.515 34.601 37.866 65.393 72.615 50.648 40.809 84.116 36 65 73 51 44 80 1 1 1 1 1 1 6952.6 860 3066 862 1367 1801 1801 1 AHVDEFK Unmodified 844.40792 0.40791731 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 4 0 1 35.624 35.624 3 0.0018369 8538 TMT1-3 112.17 68.036 154.57 425.26 351.31 291.74 228.31 484.91 148 415 361 290 247 461 1 1 1 1 1 1 48209 861 1910 863 1368 1802 1802 1 AHVEGDGVVEGIIR Unmodified 1449.7576 0.75759147 16 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 47.006 47.006 3 1.3833E-14 14065 TMT1-2 131.66 101.46 46.622 57.728 50.246 27.767 49.74 67.871 44 58 51 29 51 65 1 1 1 1 1 1 12151 862 16 864 1369 1803 1803 1 AHVETAQK Unmodified 882.45593 0.45593014 2193 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 0 0 4 0 1 25.222 25.222 3 0.031074 4491 TMT1-3 54.549 25.211 23.413 21.593 14.142 15.132 22.317 0 22 22 15 15 22 0 1 1 1 1 1 0 1337.2 863 2193 865 1370 1804 1804 1 AHVQEVAQHNLK Unmodified 1372.7211 0.72114638 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 6 0 1 31.717 31.717 4 0.00038061 6897 TMT1-5 85.288 59.903 122.84 177.99 122.75 172.77 130.17 181.77 116 177 131 167 138 174 1 1 1 1 1 1 5996.1 864 2109 866 1371 1805 1805 1 AHVVPCFDASK Unmodified 1229.5863 0.58629239 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.14 1 2 3 1 43.986 43.986 3;4 1.0374E-05 11188 TMT1-6 115.57 105.62 4621.7 5794 5132.3 3979 5327.7 5902.9 4363 5819 5250 4012 5462 5680 9 9 9 9 9 9 1145600 865 831 867 1372;1373;1374;1375;1376;1377;1378 1806;1807;1808;1809;1810;1811;1812;1813;1814 1811 9 AHYETEGSR Unmodified 1048.4574 0.4573867 362 Q12968;Q14934-6;O95644-10;Q14934-10;Q12968-2;Q14934-9;Q14934-8;Q14934;Q14934-7;O95644-6;Q14934-14;Q14934-5;Q14934-4;O95644;Q14934-3;Q14934-2;Q12968-4;Q12968-3;Q14934-12;Q14934-11;O95644-4;O95644-11;Q14934-15;Q14934-16;Q14934-17;Q12968-6;Q14934-13;Q14934-18;O95644-2;O95644-5;Q12968-5;O95644-8;O95644-3;Q13469-2;Q13469-5;Q13469;Q13469-4;Q13469-3 NFATC3;NFATC4;NFATC1;NFATC2 Nuclear factor of activated T-cells, cytoplasmic 3;Nuclear factor of activated T-cells, cytoplasmic 4;Nuclear factor of activated T-cells, cytoplasmic 1;Nuclear factor of activated T-cells, cytoplasmic 2 yes no 0 0 0 0 0 2 0 1 19.586 19.586 3 0.0097549 3392 TMT1-1 66.299 39.915 3.1758 3.9768 3.8921 4.0689 3.7811 6.2881 3 4 4 4 4 6 1 1 1 1 1 1 527.08 866 362 868 1379 1815 1815 1 AHYGGFTVQNEANK Unmodified 1534.7165 0.71645494 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 6.17 2.67 1 1 1 2 1 39.648 39.648 3;4 5.6215E-28 9396 TMT 1-phospho 189.24 164.74 1902.9 2423.5 2019.2 1689 2069.2 2728.5 1796 2430 2079 1691 2142 2615 10 10 10 10 10 10 866460 867 438 869 1380;1381;1382;1383;1384;1385 1816;1817;1818;1819;1820;1821;1822;1823;1824;1825 1816 10 AIADMLR Unmodified 788.42146 0.42145889 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.5 2.29 1 1 1 1 53.106 53.106 2 1.2651E-05 14732 TMT1-6 131.3 45.411 2345.4 3323.3 2989.4 2307.1 2742.2 4266.8 2218 3319 3053 2321 2863 4076 4 4 4 4 4 4 373790 868 3010 870 1386;1387;1388;1389 1826;1827;1828;1829;1830 1830 5 AIADTGANVVVTGGK Unmodified 1371.7358 0.73579339 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 6 0 1 51.34 51.34 2 7.5736E-18 14653 TMT1-5 154.47 110.27 115.52 144.5 119.29 101.96 128.22 120 109 145 123 102 131 116 1 1 1 1 1 1 25386 869 1232 871 1390 1831 1831 1 AIAEGLGSELLVGTTK Unmodified 1557.8614 0.86138784 1926 Q32P44-2;Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 yes no 0 0 0 0 0 6 0 1 69.807 69.807 3 5.2057E-16 21945 TMT1-5 135.14 111.07 77.284 116.93 76.606 57.209 86.079 66.834 73 116 80 58 87 65 1 1 1 1 1 1 8033.3 870 1926 872 1391 1832 1832 1 AIAELGIYPAVDPLDSTSR Unmodified 1987.0262 0.026221336 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 5 0 1 75.817 75.817 3 1.2429E-35 24095 TMT1-4 160.81 143.32 184.72 222.4 144.34 131.3 174.66 221.01 174 223 152 131 180 212 1 1 1 1 1 1 193540 871 508 873 1392 1833 1833 1 AIAGVINQPYYNYEAGPDAVLGR Unmodified 2450.223 0.22302366 375 O95861-3;O95861-4;O95861;O95861-2 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 0 6 0 1 70.408 70.408 3 0.0034294 22215 TMT1-5 41.482 29.423 23.248 28.69 35.819 29.051 27.159 53.591 22 29 36 29 29 51 1 1 1 1 1 1 7317.7 872 375 874 1393 1834 1834 1 AIAGVSGFGYDHLILNVEWAKPSTN Unmodified 2658.3442 0.34420143 302 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 1 8 0 1 76.79 76.79 4 0.00053879 24153 TMT1-7 51.234 41.647 23.254 36.26 28.467 13.869 44.112 37.117 22 36 29 15 44 36 1 1 1 1 1 1 3564.1 873 302 875 1394 1835 1835 1 AIANECQANFISIK Unmodified 1577.7872 0.78717704 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 7 0 1 59.428 59.428 3 1.3048E-05 17216 TMT1-6 97.417 76.324 562.58 691.33 801.95 579.75 455.92 903.75 532 698 806 582 491 860 2 2 2 2 2 2 102950 874 1311 876 1395 1836;1837 1836 2 AIANYEK Unmodified 807.41267 0.41266834 17 P14598;A6NI72;P14598-2 NCF1;NCF1B Neutrophil cytosol factor 1;Putative neutrophil cytosol factor 1B yes no 0 0 0 0 0 5 0 1 40.249 40.249 2 0.0020562 10147 TMT1-4 91.626 26.823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 875 17 877 1396 1838 1838 1 AIAQLFEK Unmodified 918.51747 0.51746776 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 8 0 2 64.007 64.007 2;3 0.0021257 19101 TMT1-7 98.523 37.875 417.19 579.42 445.32 324.47 456.24 565.82 394 578 459 329 469 543 2 2 2 2 2 2 68114 876 1592 878 1397;1398 1839;1840 1840 2 AIASIPTER Unmodified 956.5291 0.52909508 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 5 0 1 42.745 42.745 2 0.0015831 11103 TMT1-4 117.4 54.74 169.09 294.04 186.85 151.07 209.11 257.33 160 290 196 152 215 247 1 1 1 1 1 1 31817 877 758 879 1399 1841 1841 1 AIASSLK Unmodified 688.41194 0.41194006 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 8 0 1 42.748 42.748 2 0.0083263 10694 TMT1-7 117.17 46.901 882.37 1166.6 934.38 695.47 1031.7 1131.4 833 1167 961 705 1054 1089 2 2 2 2 2 2 105850 878 316 880 1400 1842;1843 1842 2 AIAVTVQEMVTK Unmodified 1288.7061 0.70607317 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 0.957 1 2 2 1 66.261 66.261 2;3 7.7253E-45 19899 TMT1-6 229.64 161.41 2068.2 2550.9 2259.4 1765.8 1524.4 3109.7 1952 2564 2312 1765 1637 2958 9 9 9 9 9 9 828240 879 3010 881 1401;1402;1403;1404;1405;1406 1844;1845;1846;1847;1848;1849;1850;1851;1852 1846 9 AIAVTVQEMVTK Oxidation (M) 1304.701 0.70098779 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 7.5 0.5 1 1 52.837 52.837 2 6.0228E-06 14572 TMT1-6 122.55 90.613 61.3 103.23 69.562 65.573 70.486 83.269 58 102 73 65 73 80 1 1 1 1 1 1 18103 880 3010 881 1407;1408 1853;1854 1853 324 2 AIAYATHR Unmodified 901.477 0.47699993 922 P28062-2;P28062 PSMB8 Proteasome subunit beta type-8 yes no 0 0 0 0 0 6.5 0.5 1 1 29.18 29.18 3 0.00082721 5963 TMT1-5 126.28 72.524 45.156 143.05 44.053 52.055 56.465 52.755 43 138 51 51 58 51 1 1 1 1 1 1 13897 881 922 882 1409;1410 1855;1856 1855 2 AICDHVR Unmodified 869.41777 0.41777049 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 2.5 1.5 1 1 25.588 25.588 3 0.0052983 4783 TMT1-3 91.906 66.983 73.378 64.336 56.215 76.157 73.104 84.26 69 66 59 74 76 81 2 2 2 2 2 2 18604 882 1074 883 1411;1412 1857;1858 1858 2 AICIDPAYSK Unmodified 1136.5536 0.55359527 201 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 0 6 0 1 53.985 53.985 2 0.00041345 15691 TMT1-5 118.71 93.495 77.463 78.578 78.899 57.379 69.8 114.2 73 80 80 58 73 109 1 1 1 1 1 1 9784.7 883 201 884 1413 1859 1859 1 AICLDHAK Unmodified 926.46439 0.46438634 2338 Q93008-1;Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 0 6 0 1 37.964 37.964 3 0.0042455 9384 TMT1-5 87.616 50.141 146.57 118.45 152.16 100.02 127.5 143.47 138 123 152 102 131 138 1 1 1 1 1 1 7888.1 884 2338 885 1414 1860 1860 1 AIDIYEQVGTNAMDSPLLK Unmodified 2077.0402 0.04015684 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 6 0 1 75.839 75.839 3 1.4535E-09 24343 TMT1-5 92.671 75.592 30.568 58.943 42.312 36.031 42.287 60.621 29 58 44 36 44 58 1 1 1 1 1 1 10140 885 1304 886 1415 1861 1861 1 AIDLFTDAIK Unmodified 1105.6019 0.60192568 1224 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 0 6.5 0.5 1 1 72.491 72.491 2 2.7386E-09 22965 TMT1-5 170.18 151.87 385.52 522.63 405.61 372.9 390.2 657.25 364 522 421 370 411 627 4 4 4 4 4 4 78413 886 1224 887 1416;1417 1862;1863;1864;1865 1862 4 AIDLVTK Unmodified 758.4538 0.45380487 2923 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 0 0 6 0 1 52.609 52.609 2 0.0094733 15057 TMT1-5 112.17 25.218 138.82 181.97 138.71 147.21 160.06 228.89 131 182 145 145 167 219 1 1 1 1 1 1 54265 887 2923 888 1418 1866 1866 1 AIDTIYQTTDFSGIR Unmodified 1699.8417 0.84171503 101 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 0 5.5 0.5 1 1 65.425 65.425 3 7.6206E-08 20030 TMT1-4 110.44 92.3 160.35 256.43 244.1 156.19 220.41 226.1 152 255 247 160 225 218 2 2 2 2 2 2 40540 888 101 889 1419;1420 1867;1868 1867 2 AIDTTQLFSLPK Unmodified 1332.7289 0.7289171 1908 Q16822;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 8 0 1 71.974 71.974 3 0.00057113 22226 TMT1-7 83.314 52.585 53.746 103.63 76.438 81.568 70.007 75.82 51 102 80 80 73 73 1 1 1 1 1 1 13077 889 1908 890 1421 1869 1869 1 AIEALKEFNEDGALAVLQQFK Unmodified 2333.2267 0.22671206 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 8 0 1 87.075 87.075 4 1.1846E-10 27976 TMT1-7 100.92 86.149 161.2 211.3 139.33 115.56 155.54 189.57 152 211 146 116 160 182 3 3 3 3 3 3 11811 890 226;227 891 1422 1870;1871;1872 1871 3 AIEDEGGNPDEIEITSEGNKK Unmodified 2244.0394 0.039364797 1853 Q15424-2;Q15424;Q15424-4;Q15424-3 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 1 3 0 1 49.984 49.984 3 0.00019374 15278 TMT1-2 63.184 58.832 46.785 43.073 35.184 21.283 35.395 37.366 44 44 36 22 36 36 1 1 1 1 1 1 8925.2 891 1853 892 1423 1873 1873 1 AIEHADGGVAAGVAVLDNPYPV Unmodified 2134.0695 0.069483134 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 4 0 2 68.708 68.708 3;4 3.309E-06 21622 TMT1-3 69.737 51.82 61.703 73.056 27.249 68.915 26.879 99.437 58 73 29 65 29 94 2 2 1 2 1 2 24075 892 1160 893 1424;1425 1874;1875 1874 2 AIEINPDSAQPYK Unmodified 1444.7198 0.71980898 1224 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 0 5 0 1 54.004 54.004 2 4.7182E-08 15582 TMT1-4 126.12 63.856 153.57 219.03 153.36 131.15 154.05 212 145 218 160 131 160 203 1 1 1 1 1 1 37698 893 1224 894 1426 1876 1876 1 AIEIYTDMGR Unmodified 1167.5594 0.55940893 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 4 0 1 56.052 56.052 2 0.010638 16667 TMT1-3 83.358 58.221 60.787 133.11 130.31 70.43 84.665 90.326 58 131 131 73 87 87 1 1 1 1 1 1 11427 894 1304 895 1427 1877 1877 1 AIELDKK Unmodified 815.47527 0.4752686 1281 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 1 6 0 1 42.681 42.681 3 0.017275 11253 TMT1-5 79.469 24.919 609.93 932.42 573.4 522.53 794.13 848.26 576 924 606 523 810 817 1 1 1 1 1 1 29562 895 1281 896 1428 1878 1878 1 AIELNPANAVYFCNR Unmodified 1750.8461 0.8460889 201 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 0 7 0 1 64.309 64.309 2 1.4778E-05 19174 TMT1-6 80.014 72.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 896 201 897 1429 1879 1879 1 AIEMLGGELGSK Unmodified 1203.6169 0.61692381 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 6 0 1 63.601 63.601 3 0.00015181 19492 TMT1-5 95.018 89.525 46.406 95.982 54.142 58.84 70.539 90.729 44 94 58 58 73 87 1 1 1 1 1 1 11454 897 553 898 1430 1880 1880 1 AIENCEYAFNLK Unmodified 1470.6813 0.68131498 1875 Q15796-2;Q15796 SMAD2 Mothers against decapentaplegic homolog 2 yes no 0 0 0 0 0 6 0 1 59.777 59.777 3 0.0020949 18071 TMT1-5 73.435 46.298 160.68 260.59 184.43 81.389 144.08 112.08 152 258 189 87 145 109 1 1 1 1 1 1 8874.2 898 1875 899 1431 1881 1881 1 AIENELLAR Unmodified 1027.5662 0.56620887 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 3.5 0.5 1 1 51.145 51.145 2 0.0059369 15758 TMT1-2 96.143 51.794 192.35 315.21 226.44 275.56 205.5 287.29 182 312 239 268 218 275 3 3 3 3 3 3 46760 899 1160 900 1432;1433 1882;1883;1884 1882 3 AIENIDTLTNLESLFLGK Unmodified 1990.0623 0.062272491 1856 Q15435-5;Q15435-4;Q15435-3;Q15435-2;Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 0 7 0 1 95.859 95.859 3 5.3043E-12 31206 TMT1-6 116.82 94.662 58.045 115.22 65.409 45.871 85.134 109.5 55 113 69 47 87 105 2 2 2 2 2 2 24258 900 1856 901 1434 1885;1886 1886 2 AIEPNDYTGK Unmodified 1106.5244 0.52440364 258 O75223;O75223-3 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 0 0 4 0 1 44.845 44.845 2 0.00091718 12253 TMT1-3 104.22 56.283 123.09 160.34 95.503 103.7 111.12 158.86 116 160 102 102 116 152 1 1 1 1 1 1 13138 901 258 902 1435 1887 1887 1 AIEPPPLDAVIEAEHTLR Unmodified 1970.0473 0.047291129 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 4 0 1 69.754 69.754 3 3.8879E-36 22075 TMT1-3 186.75 182.5 92.05 123.83 113.8 110.12 118.96 135.19 87 124 117 109 123 130 2 2 2 2 2 2 45336 902 1619 903 1436 1888;1889 1889 2 AIEQADLLQEEAETPR Unmodified 1811.8901 0.89012178 1334 P56377 AP1S2 AP-1 complex subunit sigma-2 yes yes 0 0 0 0 0 2 0 1 57.453 57.453 3 1.1823E-11 17816 TMT1-1 122.16 110.89 61.265 110.69 69.094 66.045 46.88 99.932 58 109 73 65 51 95 2 2 2 2 2 2 29704 903 1334 904 1437 1890;1891 1890 2 AIEQADLLQEEDESPR Unmodified 1841.8643 0.86430096 1407 P61966 AP1S1 AP-1 complex subunit sigma-1A yes yes 0 0 0 0 0 2 0 1 54.617 54.617 2 9.1257E-06 16734 TMT1-1 78.486 53.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 904 1407 905 1438 1892 1892 1 AIETTDIISR Unmodified 1117.5979 0.59790293 2415 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 0 4 0 1 48.957 48.957 2 0.00016651 13828 TMT1-3 132.39 75.732 60.968 133.61 99.557 55.748 91.056 137.05 58 131 102 58 94 131 1 1 1 1 1 1 13623 905 2415 906 1439 1893 1893 1 AIFLADGK Unmodified 833.4647 0.46470391 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 7 0 1 56.404 56.404 2 0.0059255 16043 TMT1-6 112.17 51.21 514.04 548.77 423.84 448.33 448.03 608.69 484 555 443 441 468 583 1 1 1 1 1 1 43524 906 2512 907 1440 1894 1894 1 AIFLADGNVFTTGFSR Unmodified 1714.8679 0.8678702 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 9 0 3 77.18 77.18 2;3 3.944E-32 22345 TMT1-8 182.02 150.19 478.72 485.59 463.21 431.07 485.04 589.52 451 494 472 428 502 566 8 8 7 8 8 8 258400 907 2913 908 1441;1442;1443 1895;1896;1897;1898;1899;1900;1901;1902 1896 8 AIFLHPEPFSIENGLLTPTLK Unmodified 2336.278 0.27801935 2910 Q9ULC5-3;Q9ULC5;Q9ULC5-4 ACSL5 Long-chain-fatty-acid--CoA ligase 5 yes no 0 0 0 0 0 8 0 1 80.234 80.234 4 0.00058171 25492 TMT1-7 53.278 45.286 38.129 58.568 34.289 21.48 27.764 46.112 36 58 36 22 29 44 1 1 1 1 1 1 5064.6 908 2910 909 1444 1903 1903 1 AIFMIPTNPPPTFR Unmodified 1600.8436 0.8435697 1665;1682 Q13043;Q13043-2;Q13188;Q13188-2 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit no no 0 0 0 0 0 9 0 1 72.305 72.305 2 0.00034641 20640 TMT1-8 83.862 56.12 15.822 29.439 20.966 22.26 28.534 22.638 15 29 22 22 29 22 1 1 1 1 1 1 3255.8 909 1665;1682 910 1445 1904 1904 1 AIFQTIQNR Unmodified 1089.5931 0.59309232 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 9 0 1 50.421 50.421 2 0.00066943 11948 TMT1-8 131.41 80.869 84.838 77.686 102.5 62.204 145.22 104.59 80 80 102 65 145 102 1 1 1 1 1 1 13838 910 352 911 1446 1905 1905 1 AIFSVYVVNK Unmodified 1138.6386 0.63864553 2962 Q9Y296-2;Q9Y296 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 0 0 0 0 0 9 0 1 66.158 66.158 2 0.00020117 18176 TMT1-8 128.38 76.388 46.561 81.303 40.52 44.348 70.672 75.801 44 80 44 44 72 73 1 1 1 1 1 1 5402 911 2962 912 1447 1906 1906 1 AIFTGYYGK Unmodified 1018.5124 0.51238239 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 0 9 0 1 57.821 57.821 2 0.0017773 14850 TMT1-8 114.89 61.728 69.004 63.321 70.925 87.869 159.23 119.11 65 65 73 87 160 116 1 1 1 1 1 1 6977.8 912 599 913 1448 1907 1907 1 AIGAVPLIQGEYMIPCEK Unmodified 1988.0111 0.011105318 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 7 0 2 74.002 74.002 3;4 6.8789E-15 22963 TMT1-6 127.75 120.3 122.4 221.01 161.03 129.95 193.12 172.51 116 218 167 131 196 167 2 2 2 2 2 2 21488 913 533 914 1449;1450 1908;1909 1909 2 AIGDHFYK Unmodified 949.46577 0.46576654 142 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 0 6 0 1 42.18 42.18 3 0.037229 11019 TMT1-5 51.854 28.963 115.6 168.45 86.052 111.49 134.05 150.74 109 167 94 109 138 145 1 1 1 1 1 1 8982.6 914 142 915 1451 1910 1910 1 AIGISNFNHLQVEMILNKPGLK Unmodified 2435.3359 0.33588535 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 1 9 0 1 68.836 68.836 4 1.7303E-16 19267 TMT1-8 106.03 71.367 46.74 34.312 50.257 59.063 71.042 75.791 44 36 51 58 73 73 1 1 1 1 1 1 7804.8 915 716 916 1452 1911 1911 1 AIGLVQDVTMGTK Unmodified 1331.7119 0.71188683 3070 yes no 0 0 0 0 0 6 0 1 56.221 56.221 2 0.038588 16603 TMT1-5 59.426 4.3622 92.167 107.96 107.47 79.145 100.48 74.951 87 109 109 80 102 73 1 1 1 1 1 1 17507 + 916 3070 917 1453 1912 1912 1 AIGSASEGAQSSLQEVYHK Unmodified 1960.949 0.94903365 924 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 0 0 0 5 0 1 49.325 49.325 3 4.4462E-72 13709 TMT1-4 227 197.66 122.79 167.07 139.66 147.81 124.79 158.47 116 167 145 145 131 152 1 1 1 1 1 1 52317 917 924 918 1454 1913 1913 1 AIGVKPPR Unmodified 836.52322 0.52322184 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 9 0 1 35.191 35.191 3 0.0017411 6487 TMT1-8 93.561 28.758 602.09 750.52 602.59 574.53 668.04 856.12 568 753 625 570 692 821 2 2 2 2 2 2 28943 918 1311 919 1455 1914;1915 1915 2 AIGVLTSGGDAQGMNAAVR Unmodified 1786.8996 0.89958103 1559;765 P17858;Q01813 PFKL;PFKP ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 0 0 0 0 0 6 0 1 54.795 54.795 3 0.00053826 16022 TMT1-5 58.061 44.843 68.77 125.27 57.729 106.37 89.279 121.11 65 123 65 102 94 116 1 1 1 1 1 1 15315 919 765;1559 920 1456 1916 1916 1 AIGYLIPLMDAEYANYYTR Unmodified 2236.0874 0.087441384 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 8 0 1 87.818 87.818 3 0.00050933 28313 TMT1-7 58.577 43.323 7.2678 22.554 21.76 14.693 21.553 22.837 7 22 22 15 22 22 1 1 1 1 1 1 2294.5 920 286 921 1457 1917 1917 1 AIHDLGK Unmodified 752.41809 0.41808807 2543 Q9BUP3;Q9BUP3-3 HTATIP2 Oxidoreductase HTATIP2 yes no 0 0 0 0 0 6 0 1 36.196 36.196 3 0.016365 8650 TMT1-5 72.138 51.583 199.62 306.47 274.45 253.27 250.83 276.4 189 305 282 251 260 266 1 1 1 1 1 1 13599 921 2543 922 1458 1918 1918 1 AIHSWLTR Unmodified 982.53485 0.53484916 925 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 0 0 0 9 0 1 41.866 41.866 3 0.00011921 8718 TMT1-8 152.63 108.18 146.36 184.76 132.03 146.87 199.01 191.53 138 185 139 145 203 185 1 1 1 1 1 1 30749 922 925 923 1459 1919 1919 1 AIHYALNCCGLAGGVEQFISDICPK Unmodified 2792.3084 0.30842633 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 0 8 0 2 79.746 79.746 4;5 2.056E-31 25373 TMT1-7 140.64 121.1 270.12 371.97 272.55 223.97 303.8 356.97 255 371 283 225 312 343 3 3 3 3 3 3 155820 923 835 924 1460;1461 1920;1921;1922 1922 3 AIIEDLEPR Unmodified 1054.5659 0.56587452 2118 Q86VS8 HOOK3 Protein Hook homolog 3 yes yes 0 0 0 0 0 3 0 1 58.028 58.028 2 0.0084433 18437 TMT1-2 91.069 42.895 85.049 93.383 53.742 66.956 47.131 91.397 80 94 58 65 51 87 1 1 1 1 1 1 7276.9 924 2118 925 1462 1923 1923 1 AIIEDVQR Unmodified 942.51345 0.51344502 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 2 0 1 43.805 43.805 2 0.014846 12483 TMT1-1 93.429 58.536 38.196 35.01 43.006 51.827 71.924 59.776 36 36 44 51 73 58 1 1 1 1 1 1 4039.1 925 2911 926 1463 1924 1924 1 AIIIFVPVPQLK Unmodified 1336.8482 0.84824438 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 9 0 1 83.058 83.058 3 3.0724E-06 24827 TMT1-8 107.79 75.458 130.46 143.25 133.44 148.57 162.16 165.93 123 145 138 146 167 160 2 2 2 2 2 2 37338 926 1412 927 1464 1925;1926 1926 2 AIIKPQYVDQIPK Unmodified 1511.8712 0.87116466 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 1 8 0 2 55.168 55.168 3;4 0.0021259 15612 TMT1-7 74.769 54.106 370.49 496.66 428.81 325.96 429.38 493.03 350 497 439 329 441 474 2 2 2 2 2 2 30539 927 1383 928 1465;1466 1927;1928 1927 2 AIILNTPHNPLGK Unmodified 1386.7983 0.79833407 2058 Q6YP21;Q6YP21-3 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 0 0 0 0 0 9 0 1 53.534 53.534 3 0.00031393 13215 TMT1-8 77.062 50.548 53.994 80.571 54.304 75.102 77.121 90.541 51 80 58 73 80 87 1 1 1 1 1 1 8707.8 928 2058 929 1467 1929 1929 1 AIISLLLIFSCQACVIGM Unmodified 2008.0559 0.055947021 3087 yes no 0 0 0 0 0 7 0 1 49.818 49.818 3 0.002249 13451 TMT1-6 43.024 10.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 929 3087 930 1468 1930 1930 1 AIIVEFAQQGLNAALFYENKDPR Unmodified 2606.3493 0.34928681 242 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 1 9 0 1 86.645 86.645 4 0.00039417 26117 TMT1-8 53.909 30.579 54.303 42.578 34.491 36.64 34.689 37.386 51 44 36 36 36 36 1 1 1 1 1 1 3885.5 930 242 931 1469 1931 1931 1 AILENYISALNTLWHPECFVCR Unmodified 2705.3094 0.3094126 1169 P49023-4;P49023-2;P49023;P49023-3 PXN Paxillin yes no 0 0 0 0 0 9 0 1 92.205 92.205 3 2.0841E-10 28198 TMT1-8 82.36 70.572 7.3655 22.826 5.1141 23.644 5.1793 30.766 7 22 7 22 7 29 1 1 1 1 1 1 3585.4 931 1169 932 1470 1932 1932 1 AILFAVVAR Unmodified 958.59639 0.59638679 1255 P51809;P51809-2;P51809-3 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 0 9 0 1 66.919 66.919 2 0.0017842 18421 TMT1-8 114.59 17.113 77.587 62.733 71.517 74.381 60.899 106.99 73 65 73 73 65 102 1 1 1 1 1 1 10077 932 1255 933 1471 1933 1933 1 AILILDNDGDR Unmodified 1213.6303 0.63026569 1402 P61923-5;P61923;P61923-4 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 0 4.5 0.5 1 1 59.259 59.259 2 0.00027166 17941 TMT1-3 104.82 72.89 207.47 290.73 229.96 227.76 236.97 318.37 196 290 239 225 247 305 3 3 3 3 3 3 29430 933 1402 934 1472;1473 1934;1935;1936 1934 3 AILILDNDGDRLFAK Unmodified 1672.9148 0.91482039 1402 P61923-5;P61923;P61923-4 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 1 7 0 1 68.897 68.897 3 1.9346E-05 21012 TMT1-6 93.237 61.175 77.168 124.17 89.935 88.327 74.644 144.98 73 123 94 87 80 138 1 1 1 1 1 1 12280 934 1402 935 1474 1937 1937 1 AILPCQDTPSVK Unmodified 1327.6806 0.6805867 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 6 0 1 51.805 51.805 2 6.2782E-05 14861 TMT1-5 108.56 64.929 84.971 101.8 59.793 89.819 90.846 97.612 80 102 65 87 94 94 1 1 1 1 1 1 18741 935 608 936 1475 1938 1938 1 AILQATLR Unmodified 884.54435 0.54435122 1653 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 0 9 0 1 49.852 49.852 2 0.0049866 11729 TMT1-8 99.305 39.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 936 1653 937 1476 1939 1939 1 AILQQLGLNSTCDDSILVK Unmodified 2087.0933 0.093255043 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 8 0 1 77.2 77.2 3 2.4292E-17 24263 TMT1-7 118.23 99.637 100.51 130.45 128.89 101.53 121.17 112.74 95 131 131 102 124 109 2 2 2 2 2 2 43317 937 787 938 1477 1940;1941 1940 2 AILSNEATK Unmodified 945.51311 0.51311067 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 6 0 1 43.009 43.009 2 0.00040662 11401 TMT1-5 138.66 79.983 68.307 132.62 129.26 93.781 66.807 152.66 65 131 131 94 73 145 1 1 1 1 1 1 10077 938 2 939 1478 1942 1942 1 AILSTKPPGTFLLR Unmodified 1512.9028 0.90279914 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 1 9 0 1 61.137 61.137 3 0.00013654 16168 TMT1-8 72.175 45.548 160.63 265.85 188.55 151.86 161.49 180.88 152 263 196 152 167 174 1 1 1 1 1 1 19268 939 1073 940 1479 1943 1943 1 AILTAAIVDADR Unmodified 1227.6823 0.68230126 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 6 0 1 62.309 62.309 2 0.0051586 18989 TMT1-5 78.136 46.502 100.1 77.313 63.265 43.129 63.398 76.009 94 80 65 44 65 73 1 1 1 1 1 1 10262 940 3034 941 1480 1944 1944 1 AILVDLEPGTMDSVR Oxidation (M) 1630.8236 0.82362212 537;1713 P07437;Q13509 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain no no 0 0 1 0 0 4.5 0.5 1 1 63.608 63.608 3 0.00020184 19617 TMT1-3 83.692 64.448 77.319 133.22 56.867 114.05 90.229 113.62 73 131 65 109 95 109 2 2 2 2 2 2 57421 941 537;1713 942 1481;1482 1945;1946 1945 89 2 AILVDLEPGTMDSVR Unmodified 1614.8287 0.8287075 537;1713 P07437;Q13509 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain no no 0 0 0 0 0 4.75 0.829 2 1 1 69.051 69.051 2;3 2.0287E-17 21509 TMT1-4 148.48 126.28 354.54 440.76 272.78 286.6 343.62 453.9 334 441 290 283 356 435 5 5 5 5 5 5 229730 942 537;1713 942 1483;1484;1485;1486 1947;1948;1949;1950;1951 1950 5 AILVVFANK Unmodified 973.59605 0.59605244 1072 P40616-2;P40616 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 0 0 9 0 1 69.028 69.028 2 6.7902E-15 19337 TMT1-8 190.52 106.72 77.128 101.39 115.86 71.292 84.625 90.327 73 102 116 73 87 87 1 1 1 1 1 1 11213 943 1072 943 1487 1952 1952 1 AIMTYVSSFYHAFSGAQK Unmodified 2006.956 0.95603328 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 9 0 1 79.79 79.79 4 5.2107E-31 23465 TMT1-8 147.83 133.14 124.04 136.18 137.08 77.172 111.53 182.3 117 138 138 80 116 174 2 2 2 2 2 2 20010 944 672;195 944 1488 1953;1954 1953 2 AINCATSGVVGLVNCLR Unmodified 1802.9131 0.91312261 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 68.739 68.739 3 8.8623E-05 19151 TMT1-8 66.289 49.154 61.747 56.987 33.581 36.838 27.058 46.132 58 58 36 36 29 44 1 1 1 1 1 1 6372.5 945 1176 945 1489 1955 1955 1 AINCPEDIVFPALDILR Unmodified 1955.0186 0.018633537 2954 Q9Y263 PLAA Phospholipase A-2-activating protein yes yes 0 0 0 0 0 6.5 0.5 1 1 87.923 87.923 3 0.00024957 29061 TMT1-5 72.819 66.915 55.234 42.11 58.73 51.703 28.703 70.603 52 44 59 51 30 67 3 3 3 3 2 3 8045.7 946 2954 946 1490;1491 1956;1957;1958 1957 3 AINEAYKEDYHK Unmodified 1479.6994 0.69940789 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 5 0 1 39.103 39.103 3 0.00034157 9706 TMT1-4 92.295 71.833 122.51 206.22 154.32 130.48 186.57 149.25 116 204 160 131 189 145 1 1 1 1 1 1 14549 947 555 947 1492 1959 1959 1 AINIADELPR Unmodified 1110.6033 0.60332266 2227 Q8NFV4;Q8NFV4-4 ABHD11 Alpha/beta hydrolase domain-containing protein 11 yes no 0 0 0 0 0 4 0 1 57.855 57.855 2 0.00025913 17336 TMT1-3 126.31 100.75 115.07 159.44 181.67 90.315 143.12 128.1 109 160 181 95 145 124 2 2 2 2 2 2 12628 948 2227 948 1493 1960;1961 1960 2 AINLQMFHK Unmodified 1100.5801 0.5800848 2456 Q96T51;Q96T51-2 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 55.83 55.83 3 0.0017253 14102 TMT1-8 90.709 65.492 107.82 144.48 151.19 91.257 131.54 251.02 102 145 152 94 138 239 1 1 1 1 1 1 8385.6 949 2456 949 1494 1962 1962 1 AINPINTFTK Unmodified 1117.6132 0.61315906 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 57.952 57.952 2 1.657E-08 14877 TMT1-8 166.19 91.078 285.47 368.8 400.72 263.96 270 373.92 270 371 403 268 282 358 3 3 3 3 3 3 52667 950 1616 950 1495;1496 1963;1964;1965 1964 3 AINQIAAALFTIHK Unmodified 1509.8667 0.86674799 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 0 9 0 1 75.17 75.17 3 1.8359E-10 21707 TMT1-8 118.13 76.587 68.933 86.869 62.842 43.297 55.805 83.688 65 87 65 44 58 80 1 1 1 1 1 1 5884.3 951 2963 951 1497 1966 1966 1 AINQQTGAFVEISR Unmodified 1532.7947 0.79470526 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 6 0 1 51.96 51.96 3 0.0012544 14921 TMT1-5 69.403 63.455 130.52 119.67 143.51 124.34 81.929 97.866 123 123 145 123 87 94 1 1 1 1 1 1 14636 952 2334 952 1498 1967 1967 1 AINTAVK Unmodified 715.42284 0.4228391 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 38.905 38.905 2 0.016353 9120 TMT1-6 100.45 51.093 69.018 79.552 54.701 65.873 101.64 58.928 65 80 58 65 102 58 1 1 1 1 1 1 6277.7 953 1763 953 1499 1968 1968 1 AINVFVSANR Unmodified 1089.5931 0.59309232 2541 Q9BUL8 PDCD10 Programmed cell death protein 10 yes yes 0 0 0 0 0 9 0 1 52.698 52.698 2 0.00037894 12830 TMT1-8 119.68 65.523 84.751 108.74 90.837 87.982 90.124 121.08 80 109 94 87 94 116 1 1 1 1 1 1 26709 954 2541 954 1500 1969 1969 1 AINVQEEK Unmodified 929.48181 0.48181054 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 40.28 40.28 2 0.0053909 10430 TMT1-3 118.26 53.012 184.81 178.41 166.32 207.28 249.33 290.3 174 182 173 203 257 279 1 1 1 1 1 1 21257 955 1737 955 1501 1970 1970 1 AIPDLTAPVAAVQAAVSNLVR Unmodified 2075.1739 0.17388863 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 9 0 7 95.631 95.631 2;3 7.2744E-52 29922 TMT1-8 174.72 149.4 287.53 332.63 264.38 361.3 320.27 363.96 271 335 279 350 334 350 9 9 9 8 9 9 777990 956 776 956 1502;1503;1504;1505;1506;1507;1508 1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982 1974 12 AIPNQGEILVIR Unmodified 1321.7718 0.77178497 1226 P50570-5;P50570;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 0 0 6 0 1 58.749 58.749 3 9.5013E-08 17619 TMT1-5 122.18 98.429 37.981 50.601 65.907 26.833 49.783 67.869 36 51 65 29 51 65 1 1 1 1 1 1 5442.7 957 1226 957 1509 1983 1983 1 AIPQLQGYLR Unmodified 1157.6557 0.65569258 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 0 8 0 1 59.866 59.866 3 0.00010042 17463 TMT1-7 114.89 76.761 30.636 44.022 43.553 28.279 43.706 29.667 29 44 44 29 44 29 1 1 1 1 1 1 9445.1 958 1573 958 1510 1984 1984 1 AIQDPAFSDGIR Unmodified 1288.6412 0.64116473 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 4 0 1 51.719 51.719 2 0.00010442 14955 TMT1-3 82.489 55.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 959 2100 959 1511 1985 1985 1 AIQDYLSTQLAQDSEFVK Unmodified 2055.0161 0.01605058 2320 Q92835;Q92835-2 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 6 0 1 78.561 78.561 3 6.3566E-08 25387 TMT1-5 97.32 68.451 30.605 51.492 42.388 44.369 63.635 67.474 29 51 44 44 65 65 1 1 1 1 1 1 10902 960 2320 960 1512 1986 1986 1 AIQLEYSEAR Unmodified 1178.5932 0.5931519 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 4 0 1 47.232 47.232 2 8.1916E-05 13183 TMT1-3 96.957 53.833 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961 162 961 1513 1987 1987 1 AIQLSGAEQLEALK Unmodified 1469.809 0.80895834 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 6 0 1 65.455 65.455 2 7.9256E-10 20242 TMT1-5 124.12 76.56 61.345 103.36 61.882 43.497 48.21 91.366 58 102 65 44 51 87 1 1 1 1 1 1 10685 962 2532 962 1514 1988 1988 1 AIQLTYNPDESSKPNMIDAATLK Unmodified 2519.2578 0.25775419 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 5.83 2.27 1 2 2 1 65.222 65.222 3;4;5 4.4062E-63 19382 TMT1-6 195.13 177.03 930.08 1360.4 1046.9 842.29 1121 1714.1 879 1354 1082 847 1165 1638 7 7 7 7 7 7 517560 963 439 963 1515;1516;1517;1518;1519;1520 1989;1990;1991;1992;1993;1994;1995 1994 7 AIQLTYNPDESSKPNMIDAATLK Oxidation (M) 2535.2527 0.25266881 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 1 0 1 6.67 0.471 1 2 59.986 59.986 3;4 1.776E-12 17509 TMT1-6 93.404 73.855 291.86 495.6 300.07 287.41 272.03 527.37 276 489 318 284 290 502 3 3 3 3 3 3 64014 964 439 963 1521;1522;1523 1996;1997;1998 1998 56 3 AIQMASR Unmodified 775.40106 0.4010578 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 6 0 1 33.576 33.576 2 0.0082888 7676 TMT1-5 117.62 49.732 325.13 287.01 295.64 372.36 360.58 454.49 306 295 306 363 376 436 1 1 1 1 1 1 51666 965 567 964 1524 1999 1999 1 AIQMVANSLK Unmodified 1073.5903 0.59031513 978 P31751-2;P31751 AKT2 RAC-beta serine/threonine-protein kinase yes no 0 0 0 0 0 9 0 1 59.561 59.561 2 0.0023544 15552 TMT1-8 85.533 32.953 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 966 978 965 1525 2000 2000 1 AIQSLKK Unmodified 786.49634 0.49633839 319 O75964;Q7Z4Y8 ATP5L;ATP5L2 ATP synthase subunit g, mitochondrial;ATP synthase subunit g 2, mitochondrial yes no 0 0 0 0 1 9 0 1 39.731 39.731 3 0.037529 8095 TMT1-8 79.469 20.864 255.75 560.83 362.47 308.77 391.47 553.81 243 549 380 309 406 530 1 1 1 1 1 1 16897 967 319 966 1526 2001 2001 1 AIRPENR Unmodified 854.47225 0.47224891 1218 P50402 EMD Emerin yes yes 0 0 0 0 1 5 0 1 20.851 20.851 3 0.041703 3578 TMT1-4 64.803 29.31 7.4092 9.9959 8.6424 10.292 6.5261 9.4078 7 10 9 10 7 9 1 1 1 1 1 1 528.08 968 1218 967 1527 2002 2002 1 AIRPQIDLK Unmodified 1052.6342 0.63422886 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 8 0 1 45.538 45.538 3 0.0064046 11826 TMT1-7 78.655 38.387 138.06 408.86 253.81 245.49 439.42 308.33 132 397 268 246 441 301 1 1 1 1 1 1 19677 969 1507 968 1528 2003 2003 1 AISAANLHLR Unmodified 1064.6091 0.60907674 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 42.039 42.039 3 7.3829E-28 10444 TMT1-7 174.41 92.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 970 2028 969 1529 2004 2004 1 AISEELDHALNDMTSI Unmodified 1757.8142 0.81417965 521;518 P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 3 0 1 80.201 80.201 3 0.0075891 26932 TMT1-2 37.555 17.977 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 971 521;518 970 1530 2005 2005 1 AISESGVALTSVLVK Unmodified 1472.845 0.84500949 853 P23141-3;P23141;P23141-2;Q9UKY3-2;Q9UKY3 CES1;CES1P1 Liver carboxylesterase 1;Putative inactive carboxylesterase 4 yes no 0 0 0 0 0 8 0 1 68.812 68.812 2 1.081E-42 21021 TMT1-7 205.12 146.75 46.582 57.616 57.101 44.063 33.285 68.34 44 58 58 44 36 65 1 1 1 1 1 1 7526.8 972 853 971 1531 2006 2006 1 AISGVHTVR Unmodified 938.52976 0.52976379 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 6 0 1 28.333 28.333 3 0.0034386 5635 TMT1-5 78.939 72.634 30.689 44.17 34.509 36.777 27.353 37.595 29 44 36 36 29 36 1 1 1 1 1 1 3171.4 973 1077 972 1532 2007 2007 1 AISHEHSPSDLEAHFVPLVK Unmodified 2212.1277 0.12766671 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 6 0 1 50.874 50.874 5 1.3366E-13 14451 TMT1-5 107.34 89.201 122.4 239.38 144 123.22 140.29 166.56 116 235 152 123 145 160 1 1 1 1 1 1 20882 974 956 973 1533 2008 2008 1 AISSSAISK Unmodified 862.476 0.47599688 2187 Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 0 7 0 1 41.995 41.995 2 0.019239 10397 TMT1-6 78.334 28.988 30.695 44.187 33.433 60.903 26.501 30.158 29 44 36 58 29 29 1 1 1 1 1 1 5089 975 2187 974 1534 2009 2009 1 AISSYFVSTMSSSIK Unmodified 1606.7913 0.79125936 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 9 0 1 70.862 70.862 3 1.5311E-05 19978 TMT1-8 80.632 41.998 53.809 80.057 85.824 72.641 108.11 74.733 51 80 87 73 109 73 1 1 1 1 1 1 12188 976 268 975 1535 2010 2010 1 AISVLAK Unmodified 700.44833 0.44832557 1697 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 0 0 0 0 0 8 0 1 50.81 50.81 2 0.0098358 13882 TMT1-7 110.63 31.18 171.16 435.26 259.29 326.17 316.38 463.21 163 424 278 318 332 443 1 1 1 1 1 1 51067 977 1697 976 1536 2011 2011 1 AITAATLK Unmodified 787.48035 0.48035398 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 8 0 1 46.837 46.837 2 0.00019261 12407 TMT1-7 153.78 83.874 207.1 333.95 255.47 228.4 296.49 290.02 196 331 265 228 303 280 1 1 1 1 1 1 22583 978 651 977 1537 2012 2012 1 AITGASLADIMAK Unmodified 1260.6748 0.67477304 1517 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 0 0 8 0 1 68.119 68.119 3 2.1868E-06 20743 TMT1-7 91.858 64.448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 979 1517 978 1538 2013 2013 1 AITGIQAFTASK Unmodified 1206.6608 0.66083754 2335 Q92947 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 59.919 59.919 3 0.00299 15693 TMT1-8 63.662 36.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 980 2335 979 1539 2014 2014 1 AITIAGIPQSIIECVK Unmodified 1711.9542 0.95424237 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 0 8 0 2 78.043 78.043 3;4 1.3835E-08 24673 TMT1-7 107.07 87.496 231.26 259.4 225.92 212.28 259.41 325.19 218 262 233 211 268 312 3 3 3 3 3 3 49731 981 1844 980 1540;1541 2015;2016;2017 2016 3 AITIAGVPQSVTECVK Unmodified 1671.8866 0.88655673 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 7 0 1 62.466 62.466 3 1.7932E-11 18385 TMT1-6 118.33 93.797 284.05 354.78 290.19 213.98 314.05 285.25 268 356 298 217 319 276 2 2 2 2 2 2 109290 982 1843 981 1542 2018;2019 2018 2 AITIANQTNCPLYITK Unmodified 1819.9502 0.95021962 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 8.33 0.471 2 1 62.284 62.284 3;4 1.044E-11 18418 TMT1-7 123.02 103.18 222.98 350.58 278.43 271.77 242.27 318.22 211 348 289 268 254 305 4 4 4 4 4 4 51706 983 1892 982 1543;1544;1545 2020;2021;2022;2023 2020 4 AITSAYYR Unmodified 943.47633 0.47633123 1880 Q15907;Q15907-2;P62491-2;P62491;P57735 RAB11B;RAB11A;RAB25 Ras-related protein Rab-11B;Ras-related protein Rab-11A;Ras-related protein Rab-25 yes no 0 0 0 0 0 6.67 1.7 1 1 1 40.47 40.47 2 0.0029767 10279 TMT1-5 133.9 89.785 577.18 578.68 608.04 467.86 627.12 728.3 544 590 616 472 644 700 4 4 4 4 4 4 134520 984 1880 983 1546;1547;1548 2024;2025;2026;2027 2025 4 AITSGGITYQDQPWHADCFVCVTCSK Unmodified 3000.3204 0.32044758 1735 Q13642-1;Q13642-5;Q13642-4;Q13642 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 7 0 2 64.077 64.077 4;5 3.0955E-36 19066 TMT1-6 136.4 120.63 192.87 207.66 229.54 180.86 233.41 271.57 182 211 232 182 240 261 2 2 2 2 2 2 44329 985 1735 984 1549;1550 2028;2029 2028 2 AITTSLTTK Unmodified 934.53351 0.53351176 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 8 0 1 47.001 47.001 2 5.5802E-38 12388 TMT1-7 219.51 140.04 207.37 249.42 282.57 122.66 195.55 172.44 196 252 281 131 198 167 1 1 1 1 1 1 32193 986 2789 985 1551 2030 2030 1 AIVAGDQNVEYK Unmodified 1305.6565 0.65648044 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 4.33 0.471 2 1 47.73 47.73 2;3 4.0469E-10 13345 TMT1-3 158.56 116.56 934.72 1223 1103.8 841.35 1048.9 1134.1 883 1226 1127 848 1077 1092 4 4 4 4 4 4 221150 987 1735 986 1552;1553;1554 2031;2032;2033;2034 2031 4 AIVAHNR Unmodified 779.44022 0.4402205 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 6 0 1 20.433 20.433 2 0.036336 3680 TMT1-5 87.839 75.934 4.25 4.986 2.8389 1.9432 3.9155 5.2183 4 5 3 2 4 5 1 1 1 1 1 1 294.41 988 740 987 1555 2035 2035 1 AIVAIENPADVSVISSR Unmodified 1739.9418 0.94176342 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 5.5 0.5 1 1 64.943 64.943 2;3 1.1856E-25 19891 TMT1-4 155.39 135.2 146.37 204.22 113.83 140.69 178.78 149.47 138 203 123 138 182 145 3 3 3 3 3 3 35043 989 579 988 1556;1557 2036;2037;2038 2036 3 AIVDCIISIIEENSESK Unmodified 1918.9558 0.95575851 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 6 0 1 102.22 102.22 3 5.8222E-10 33716 TMT1-5 110.38 93.363 15.898 22.096 14.338 10.908 13.864 8.1324 15 22 15 11 14 8 2 2 2 2 2 2 1442.8 990 3047 989 1558 2039;2040 2039 2 AIVDCIISIVEENPESK Unmodified 1914.9608 0.96084389 2838 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 0 5 0 1 92.151 92.151 3 2.608E-14 30448 TMT1-4 99.747 82.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 991 2838 990 1559 2041 2041 1 AIVDGNLK Unmodified 828.47052 0.47051757 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 6 0 1 46.823 46.823 2 0.00075436 12955 TMT1-5 148.38 59.44 730.41 968.57 852.75 650.05 799.84 937.64 690 970 872 655 824 901 2 2 2 2 2 2 103920 992 270;831;1771 991 1560 2042;2043 2043 2 AIVFVVDSAAFQR Unmodified 1421.7667 0.76669959 3032 Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes yes 0 0 0 0 0 9 0 1 71.833 71.833 2 0.0014157 20430 TMT1-8 83.869 44.906 30.713 59.345 17.687 53.909 41.465 60.645 29 58 22 51 44 58 1 1 1 1 1 1 6430.4 993 3032 992 1561 2044 2044 1 AIVICPTDEDLKDR Unmodified 1643.8189 0.8188711 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 1 5 0 1 52.168 52.168 3 0.00010009 14843 TMT1-4 89.26 79.972 99.062 192.08 139.72 115.54 155.03 204.51 94 189 145 116 160 196 1 1 1 1 1 1 15590 994 2540 993 1562 2045 2045 1 AIVQLVNER Unmodified 1040.5978 0.59784335 1828 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 0 6 0 1 51.08 51.08 2 0.0072935 14567 TMT1-5 93.162 43.74 161.2 181.09 164.67 97.563 218.45 148.34 152 183 167 102 218 145 1 1 1 1 1 1 16495 995 1828 994 1563 2046 2046 1 AIVWGMQTR Unmodified 1060.5488 0.54878467 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 9 0 1 53.956 53.956 2 0.0017359 13404 TMT1-8 116.73 71.414 61.578 64.072 56.011 58.157 100.93 89.862 58 65 58 58 102 87 1 1 1 1 1 1 11823 996 1283 995 1564 2047 2047 1 AIVWLAGYNATTQEIVRPSELLAGVK Unmodified 2798.5331 0.53306483 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 1 9 0 1 81.811 81.811 4 2.6597E-33 24268 TMT1-8 119.02 98.943 38.121 50.991 42.026 52.319 48.867 60.434 36 51 44 51 51 58 1 1 1 1 1 1 7205.6 997 1314 996 1565 2048 2048 1 AIVWNNDLLWEDYEEK Unmodified 2035.9527 0.95272204 2849 Q9UBW5;Q9UBW5-3 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 5.67 0.471 1 2 78.937 78.937 3 5.173E-20 25465 TMT1-5 121.79 97.988 372.28 438.12 359.11 315.48 394.17 527.08 351 441 367 315 408 505 4 4 3 4 4 4 93601 998 2849 997 1566;1567;1568 2049;2050;2051;2052;2053;2054 2053 6 AIWAALQTQTSNAAK Unmodified 1572.826 0.82600539 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 9 0 1 63.921 63.921 3 1.0124E-22 17259 TMT1-8 148.52 123.2 92.069 138.99 97.634 88.148 59.753 121.95 87 138 102 87 65 116 1 1 1 1 1 1 21456 999 2789 998 1569 2055 2055 1 AIWGYCDQLK Unmodified 1252.591 0.59104341 2441 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 0 8 0 1 60.979 60.979 3 0.00089176 17933 TMT1-7 64.654 41.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1000 2441 999 1570 2056 2056 1 AIWHAFTALDQDHSGK Unmodified 1795.8642 0.86418181 2858 Q9UH65 SWAP70 Switch-associated protein 70 yes yes 0 0 0 0 0 8 0 1 57.042 57.042 4 8.0018E-05 16380 TMT1-7 78.069 62.434 115.45 151.86 124.71 164.7 146.26 150.4 109 152 131 160 152 145 1 1 1 1 1 1 6467.6 1001 2858 1000 1571 2057 2057 1 AIWNVINWENVTER Unmodified 1742.874 0.87401821 465 P04179-4;P04179;P04179-2;P04179-3 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 8 0.816 1 1 1 78.005 78.005 3 5.7715E-17 24637 TMT1-7 145.52 120.33 300.45 445.63 390.2 273.58 373.13 464.79 284 444 398 278 384 446 5 6 6 6 6 6 235470 1002 465 1001 1572;1573;1574 2058;2059;2060;2061;2062;2063 2061 6 AIYDFTDTVIR Unmodified 1312.6663 0.66631685 1829 Q15118 PDK1 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 67.341 67.341 2 5.1563E-08 20843 TMT1-4 118.91 77.112 38.117 50.979 42.734 36.434 19.49 53.81 36 51 44 36 22 51 1 1 1 1 1 1 6328.4 1003 1829 1002 1575;1576 2064;2065 2064 2 AIYDTPCIQAESEK Unmodified 1623.745 0.74503745 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 0 4 0 1 52.781 52.781 3 0.011954 15387 TMT1-3 52.527 31.276 115.64 129.71 112.24 110.06 127.04 143.48 109 131 116 109 131 138 1 1 1 1 1 1 16429 1004 55 1003 1577 2066 2066 1 AIYHDLEQSIR Unmodified 1343.6834 0.68336389 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 48.206 48.206 3 1.7384E-09 13275 TMT1-4 163.9 127.23 261.95 317.6 248.48 328.34 293.31 340.21 247 319 262 319 306 327 3 3 3 3 3 3 52168 1005 2926 1004 1578;1579 2067;2068;2069 2069 3 AIYVEYGYHITK Unmodified 1455.7398 0.73981614 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 7 0 1 53.469 53.469 3 1.6343E-05 14902 TMT1-6 105.65 92.245 153.6 207.25 157.78 145.08 212.85 186.87 145 207 164 145 216 181 1 1 1 1 1 1 12324 1006 2407 1005 1580 2070 2070 1 AKDFSLILDDVAITELSFSR Unmodified 2239.1736 0.17361385 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 1 7 0 2 88.834 88.834 3;4 0.00043398 28696 TMT1-6 58.914 44.928 46.666 58.93 41.854 44.509 57.859 52.715 44 59 44 44 59 51 2 2 2 2 2 2 14711 1007 2479 1006 1581;1582 2071;2072 2072 2 AKDINQEVYNFLATAGAK Unmodified 1952.0003 0.0003409361 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 73.761 73.761 4 1.4011E-06 22956 TMT1-7 90.223 67.571 68.803 134 44.824 44.254 62.027 114.42 65 131 51 44 65 109 1 1 1 1 1 1 11430 1008 2492 1007 1583 2073 2073 1 AKDPFAHLPK Unmodified 1122.6186 0.61857879 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 8 0 1 44.253 44.253 4 0.0076935 11303 TMT1-7 69.01 42.412 1762.9 2743.5 1830.7 1645.2 2204.2 2299.4 1666 2719 1920 1643 2255 2216 2 2 2 2 2 2 137770 1009 904 1008 1584 2074;2075 2074 2 AKEAAEQDVEK Unmodified 1216.5935 0.59354583 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 1 4 0 1 36.218 36.218 3 0.0029735 8821 TMT1-3 79.875 38.335 239 264.92 182.75 177.14 230.33 274.85 225 267 192 176 237 264 1 1 1 1 1 1 15820 1010 897 1009 1585 2076 2076 1 AKEAEGGAATAGPSR Unmodified 1371.6743 0.67425577 2821 Q9P253 VPS18 Vacuolar protein sorting-associated protein 18 homolog yes yes 0 0 0 0 1 4 0 1 27.254 27.254 3 0.00069982 5294 TMT1-3 75.764 71.902 15.745 45.414 20.335 14.921 13.957 30.516 15 44 22 15 15 29 1 1 1 1 1 1 2189.4 1011 2821 1010 1586 2077 2077 1 AKEAQDDLVK Unmodified 1115.5823 0.58225287 720 P15311 EZR Ezrin yes yes 0 0 0 0 1 4 0 1 38.646 38.646 3 0.0092368 9773 TMT1-3 72.496 37.609 222.06 439.59 176.69 225.6 172.19 379.91 210 430 198 219 187 361 1 1 1 1 1 1 22078 1012 720 1011 1587 2078 2078 1 AKEFTNVYIK Unmodified 1211.655 0.65502388 662 P11940-2;P11940;Q13310-2;Q13310;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 yes no 0 0 0 0 1 8 0 1 49.998 49.998 3 0.0093424 13575 TMT1-7 72.34 36.381 324.03 469.6 325.5 257.96 362.83 420.31 306 467 339 260 372 404 1 1 1 1 1 1 33577 1013 662 1012 1588 2079 2079 1 AKEGVVAAAEK Unmodified 1071.5924 0.59242362 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 1 5.5 0.5 1 1 38.575 38.575 3 0.0065692 9604 TMT1-5 72.681 32.185 1327.5 1656.7 1262.2 1078.9 1048.9 1762 1252 1661 1309 1074 1108 1681 2 2 2 2 2 2 90205 1014 1054 1013 1589;1590 2080;2081 2081 2 AKEILQEEEDLAEIVQLVGK Unmodified 2253.2104 0.21039329 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 1 5 0 1 89.47 89.47 4 9.5657E-10 29387 TMT1-4 93.684 80.626 53.89 80.283 72 42.598 63.973 60.003 51 80 73 44 65 58 2 2 2 2 2 2 6115.4 1015 1057 1014 1591 2082;2083 2082 2 AKEIYMTFLSSK Unmodified 1416.7323 0.73228792 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 1 9 0 1 65.485 65.485 3 0.0037737 17883 TMT1-8 63.631 33.193 176.98 224.44 180.91 207.08 213.39 271.07 167 225 189 203 222 260 1 1 1 1 1 1 14625 1016 188 1015 1592 2084 2084 1 AKELPTLK Unmodified 898.54877 0.54876789 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 8 0 1 45.602 45.602 3 0.020541 11829 TMT1-7 72.006 13.329 254.93 623.3 447.95 394.59 381.01 652.18 243 609 466 392 403 622 1 1 1 1 1 1 40328 1017 1152;1153 1016 1593 2085 2085 1 AKELSVMFIETSAK Unmodified 1552.8171 0.81708018 2733 Q9NRW1;Q9NRW1-2 RAB6B Ras-related protein Rab-6B yes no 0 0 0 0 1 8 0 1 63.574 63.574 3 7.1595E-05 18937 TMT1-7 90.498 64.632 115.56 175.91 85.559 112.52 80.86 144.8 109 174 94 109 87 138 1 1 1 1 1 1 16001 1018 2733 1017 1594 2086 2086 1 AKETADAITK Unmodified 1046.5608 0.56078914 1543 Q00765 REEP5 Receptor expression-enhancing protein 5 yes yes 0 0 0 0 1 5 0 1 37.704 37.704 3 0.021146 9154 TMT1-4 62.528 37.673 249.37 395.02 314.01 211.87 292.45 429.78 236 392 322 216 303 411 1 1 1 1 1 1 17783 1019 1543 1018 1595 2087 2087 1 AKFEELNMDLFR Unmodified 1511.7442 0.74424959 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 7 0 1 65.499 65.499 2 0.023229 19640 TMT1-6 86.463 57.376 53.699 103.5 84.349 74.182 30.837 99.324 51 102 87 73 36 94 1 1 1 1 1 1 16747 1020 640 1019 1596 2088 2088 1 AKFENLCK Unmodified 1008.5063 0.50625115 561;1955 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 1 8 0 1 43.147 43.147 3 0.015341 10953 TMT1-7 76.221 50.836 670.7 1066.7 886.04 651.77 719.09 1032.7 635 1059 908 657 750 988 2 2 2 2 2 2 72785 1021 561;1955 1020 1597 2089;2090 2090 2 AKFYPEDVSEELIQDITQR Unmodified 2280.1274 0.12739194 894 P26038 MSN Moesin yes yes 0 0 0 0 1 5.5 0.5 1 1 76.668 76.668 3;4 4.0703E-17 24491 TMT1-4 118.96 94.953 261.7 325.55 283.26 217.13 226.66 389.02 247 327 290 218 239 371 4 4 4 4 4 4 29527 1022 894 1021 1598;1599 2091;2092;2093;2094 2091 4 AKHDELTYF Unmodified 1122.5346 0.53457439 460 P04080 CSTB Cystatin-B yes yes 0 0 0 0 1 5 0 1 46.163 46.163 3 0.0061632 12446 TMT1-4 78.934 72.973 355.48 687.84 445.96 389.68 648.41 578.46 337 676 468 392 656 560 2 2 2 2 2 2 87960 1023 460 1022 1600 2095;2096 2095 2 AKKPAGATPK Unmodified 967.58147 0.581465 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 2 9 0 1 29.884 29.884 4 0.027658 4880 TMT1-8 62.271 34.103 388.78 262.05 259.37 192.9 312.15 33.733 365 275 264 196 308 40 1 1 1 1 1 1 8091.2 1024 743 1023 1601 2097 2097 1 AKKPALVAK Unmodified 924.61204 0.61203685 941;874 P29692;P29692-2;P29692-3;P29692-4;P24534 EEF1D;EEF1B2 Elongation factor 1-delta;Elongation factor 1-beta no no 0 0 0 0 2 9 0 1 37.287 37.287 4 0.023657 7143 TMT1-8 66.435 44.562 445.49 913.76 634.84 571.35 618.74 955.6 423 897 663 568 648 913 1 1 1 1 1 1 19849 1025 941;874 1024 1602 2098 2098 1 AKLEEHFK Unmodified 1000.5342 0.53418046 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 1 6 0 1 37.507 37.507 4 0.021985 9172 TMT1-5 64.091 35.348 215.12 250.65 241.55 166.39 150.61 326.16 203 253 245 168 162 310 1 1 1 1 1 1 15661 1026 65 1025 1603 2099 2099 1 AKPAEAPAAAAPK Unmodified 1191.6612 0.66117189 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 1 6.5 0.5 1 1 35.249 35.249 3 0.00030696 8228 TMT1-5 89.26 56.762 277.03 387.07 360.01 206.85 239.41 457.94 262 387 364 213 253 436 3 3 3 3 3 3 35742 1027 1046 1026 1604;1605 2100;2101;2102 2100 3 AKPALEDLR Unmodified 1011.5713 0.57129425 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 1 6 0 1 41.384 41.384 3 0.026031 10707 TMT1-5 62.166 31.056 408.82 600.2 572.58 428.08 297.7 718.52 387 599 582 428 327 682 1 1 1 1 1 1 47883 1028 431 1027 1606 2103 2103 1 AKPLTDSEK Acetyl (N-term) 1029.5342 0.53424004 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 1 0 0 0 1 4 0 1 40.178 40.178 2 0.029166 10380 TMT1-3 62.582 38.814 137.54 271.22 278.48 144.43 271.38 250.23 131 268 279 152 274 242 1 1 1 1 1 1 21095 1029 648 1029 1607 2104 2104 1 AKPSAPVVSGPAAR Unmodified 1306.7357 0.73573382 1500 Q5TFQ8;P78324-4;P78324;P78324-2 SIRPB1;SIRPA Signal-regulatory protein beta-1 isoform 3;Tyrosine-protein phosphatase non-receptor type substrate 1 yes no 0 0 0 0 1 8 0 1 35.905 35.905 3 0.0055314 8007 TMT1-7 63.754 35.457 53.732 126.25 59.53 66.325 62.332 76.039 51 123 65 65 65 73 1 1 1 1 1 1 8473.8 1030 1500 1030 1608 2105 2105 1 AKPVTQIVSAEAWGR Unmodified 1611.8733 0.87328993 1 P0DSE2;P01850;A0A5B9 TRBC1;TRBC2 T-cell receptor beta-1 chain C region;T-cell receptor beta-2 chain C region yes no 0 0 0 0 1 8 0 1 53.545 53.545 3 0.0019991 15037 TMT1-7 66.913 45.355 77.23 101.67 98.576 118.93 105.21 97.202 73 102 102 116 109 94 1 1 1 1 1 1 12624 1031 1 1031 1609 2106 2106 1 AKPYEGSILEADCDILIPAASEK Unmodified 2489.236 0.23595611 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 1 5 0 1 67.555 67.555 4 5.9552E-13 20874 TMT1-4 99.11 77.91 138.27 246.28 176.1 144.46 187.47 256.89 131 243 183 145 194 246 1 1 1 1 1 1 37479 1032 387 1032 1610 2107 2107 1 AKQTLENER Unmodified 1087.5622 0.56218613 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5 0 1 30.206 30.206 3 0.0050145 6214 TMT1-4 82.831 36.374 227.93 399.78 306.81 296.65 166.04 433.39 216 395 319 291 186 411 1 1 1 1 1 1 44965 1033 1019 1033 1611 2108 2108 1 AKTPVTLK Unmodified 856.5382 0.53820321 1090 P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 9 0 1 40.045 40.045 3 0.028427 8111 TMT1-8 52.49 18.412 96.718 123.5 50.807 90.949 59.221 133.69 91 123 58 87 65 127 1 1 1 1 1 1 10702 1034 1090 1034 1612 2109 2109 1 AKWDAWNELK Unmodified 1259.6299 0.62987176 526 P07108;P07108-3;P07108-2;P07108-4;P07108-5 DBI Acyl-CoA-binding protein yes no 0 0 0 0 1 8 0 2 58.281 58.281 3;4 6.1832E-05 16878 TMT1-7 131.17 74.39 1121.7 1908.8 1203.6 1009.3 1043.5 1889 1061 1884 1265 1007 1104 1800 2 2 2 2 2 2 95650 1035 526 1035 1613;1614 2110;2111 2111 2 AKWDTANNPLYK Unmodified 1419.7147 0.71466402 484 P05106 ITGB3 Integrin beta-3 yes yes 0 0 0 0 1 6.75 3.34 1 1 2 50.957 50.957 3;4 6.3193E-09 13869 TMT1-7 142.76 98.951 2315.3 3162.7 2404.3 1865.1 1946.2 3153.1 2186 3157 2485 1871 2046 3010 5 5 5 5 5 5 325220 1036 484 1036 1615;1616;1617;1618 2112;2113;2114;2115;2116 2113 5 AKWFPEVR Unmodified 1031.5553 0.55525025 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 1 9 0 1 50.147 50.147 3 0.0071604 11854 TMT1-8 69.716 45.88 177.61 178.69 114.84 148.76 153.06 217.36 167 181 123 145 160 208 1 1 1 1 1 1 11815 1037 717 1037 1619 2117 2117 1 ALAAAGYDVEK Unmodified 1106.5608 0.56078914 630;745;744 P10412;Q02539;P22492;P16402;P16403 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 0 0 0 0 0 4.8 2.04 1 2 1 1 50.493 50.493 2;3 6.9047E-42 14178 TMT1-4 220.45 162.49 3934.5 6521 4069.9 4143.1 5837.6 2960 3720 6442 4312 4113 5860 2933 5 5 5 5 5 5 1332900 1038 630;744;745 1038 1620;1621;1622;1623;1624 2118;2119;2120;2121;2122;2123;2124;2125 2120 8 ALAAFLK Unmodified 732.45341 0.45341094 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 0 9 0 1 63.535 63.535 2 0.00022825 17120 TMT1-8 127.32 45.645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1039 1060 1039 1625 2126 2126 1 ALAAGGVGSIVR Unmodified 1069.6244 0.62439245 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 49.431 49.431 2 2.1845E-33 13320 TMT1-7 207.68 109.16 972.46 1344 970.62 920.14 1001.1 1356.2 918 1340 1014 912 1042 1299 5 5 5 5 5 5 447550 1040 150 1040 1626;1627;1628;1629 2127;2128;2129;2130;2131 2130 5 ALAAGGYDVEK Unmodified 1092.5451 0.54513908 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 0 3.33 1.7 1 1 1 48.557 48.557 2;3 1.8229E-16 13344 TMT1-4 180.8 94.789 605.56 2031.6 1098.2 1032.5 1479.7 763.67 580 1965 1173 1030 1485 756 4 4 4 4 4 4 342920 1041 743 1041 1630;1631;1632 2132;2133;2134;2135 2134 4 ALAAHPWK Unmodified 892.49192 0.49192172 1062 P39210 MPV17 Protein Mpv17 yes yes 0 0 0 0 0 9 0 1 41.634 41.634 3 0.0050356 8646 TMT1-8 70.268 34.972 99.345 161.57 118.02 109.43 141.88 138.8 94 160 123 109 145 134 1 1 1 1 1 1 7412.6 1042 1062 1042 1633 2136 2136 1 ALADQMNLILSK Oxidation (M) 1331.7119 0.71188683 2839 Q9UBJ2 ABCD2 ATP-binding cassette sub-family D member 2 yes yes 0 0 1 0 0 7 0 1 56.408 56.408 2 0.028238 16054 TMT1-6 86.624 24.322 84.829 61.469 117.89 78.691 91.614 90.128 80 65 116 80 94 87 1 1 1 1 1 1 12413 1043 2839 1043 1634 2137 2137 317 1 ALADTENLR Unmodified 1001.5142 0.5141733 2675 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 0 3 0 1 40.89 40.89 2 1.3345E-05 11656 TMT1-2 155.07 84.543 84.718 123.76 83.77 56.383 107.28 120.59 80 123 87 58 109 116 1 1 1 1 1 1 12047 1044 2675 1044 1635 2138 2138 1 ALADYIR Unmodified 820.4443 0.44430282 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 6 0 1 51.184 51.184 2 0.02412 14579 TMT1-5 94.401 0 129.56 255.14 190.81 143.35 200.09 164.85 123 251 197 145 203 160 1 1 1 1 1 1 31631 1045 2521 1045 1636 2139 2139 1 ALAEEAK Unmodified 730.38612 0.38611924 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 36.975 36.975 2 0.0012883 9124 TMT1-3 102.77 5.3007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1046 1833 1046 1637 2140 2140 1 ALAEEAKR Unmodified 886.48723 0.48723027 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 5 0 1 31.242 31.242 3 0.0047171 6571 TMT1-4 93.162 32.201 250.53 278.45 217.79 172.56 246.56 295.71 236 281 225 174 253 284 1 1 1 1 1 1 13911 1047 1833 1047 1638 2141 2141 1 ALAEGVLLR Unmodified 940.57057 0.57056597 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 6 0 1 54.772 54.772 2 3.7388E-06 16040 TMT1-5 163.9 79.538 128.39 354.42 302.84 239.47 197.39 267.26 123 346 310 239 208 256 1 1 1 1 1 1 46508 1048 1160 1048 1639 2142 2142 1 ALAEIAK Unmodified 714.42759 0.42759012 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 6 0 1 47.8 47.8 2 0.011071 13314 TMT1-5 105.39 13.484 356.23 376.58 222.45 288.34 294.46 421.2 335 380 240 281 308 403 1 1 1 1 1 1 55257 1049 857 1049 1640 2143 2143 1 ALAENSGVK Unmodified 887.47125 0.47124585 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5 0 1 37.64 37.64 2 9.2228E-09 9108 TMT1-4 171.36 89.726 252.33 411.36 343.3 187.74 262.37 485.01 239 408 349 195 275 462 1 1 1 1 1 1 35341 1050 1232 1050 1641 2144 2144 1 ALAFHPVEPVLVTASEDHTLK Unmodified 2273.2056 0.20558268 1664 Q13033-2;Q13033 STRN3 Striatin-3 yes no 0 0 0 0 0 6 0 1 59.712 59.712 4 7.855E-05 17973 TMT1-5 63.857 56.826 68.656 117.4 83.464 73.633 62.802 52.574 65 116 87 73 65 51 1 1 1 1 1 1 10034 1051 1664 1051 1642 2145 2145 1 ALAGCDFLTISPK Unmodified 1391.7119 0.71188683 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 7.67 0.471 1 2 67.351 67.351 2;3 5.6688E-11 20397 TMT1-7 147.37 101.21 470.97 625.94 564.01 408.67 426.88 851.28 445 627 575 412 454 810 3 3 3 3 3 3 252930 1052 1053 1052 1643;1644;1645 2146;2147;2148 2147 3 ALAGNPK Unmodified 669.38097 0.38097428 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 0 6.5 0.5 1 1 34.944 34.944 2 0.005571 7684 TMT1-6 133.99 68.312 1379 1824.4 1842.3 1621.6 1969 1809.3 1304 1831 1877 1618 2013 1750 4 4 4 4 4 4 251100 1053 2626 1053 1646;1647 2149;2150;2151;2152 2151 4 ALALGASTVMMGSLLAATTEAPGEYFFSDGIR Unmodified 3246.5941 0.59408647 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 9 0 1 104.02 104.02 4 1.5656E-07 32441 TMT1-8 59.211 52.099 14.778 22.037 22.407 0 22.485 31.338 14 22 22 0 22 30 2 2 2 0 1 2 2584.1 1054 667 1054 1648 2153;2154 2153 2 ALALLEDEER Unmodified 1157.5928 0.59281755 3 A0FGR8-2;A0FGR8;A0FGR8-6 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 2.5 0.5 1 1 59.927 59.927 2 0.00021267 18831 TMT1-1 128.6 79.184 216.59 206.35 212.51 197.88 195.7 250.26 204 211 217 196 204 240 4 4 4 4 4 4 32264 1055 3 1055 1649;1650 2155;2156;2157;2158 2155 4 ALAMGYKPK Unmodified 977.53682 0.536823 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 1 9 0 1 44.732 44.732 3 0.0010426 9722 TMT1-8 101.43 67.509 191.91 239.34 184.16 136.69 168.31 215.86 181 240 190 138 174 207 1 1 1 1 1 1 16000 1056 1312 1056 1651 2159 2159 1 ALANSLACQGK Unmodified 1131.5706 0.57064232 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 5.33 3.09 1 1 1 45.34 45.34 2;3 3.2606E-23 11662 TMT1-7 195.36 130.11 1036.5 1639.3 1313 965.56 871.72 1590.1 981 1627 1349 970 928 1515 4 4 4 4 4 4 238350 1057 459 1057 1652;1653;1654 2160;2161;2162;2163;2164 2163 5 ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK Unmodified 3807.9214 0.92138569 494 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 0 0 0 0 0 7 0 2 75.209 75.209 4;5 4.1751E-13 23464 TMT1-6 68.154 61.394 176.56 265.35 217.5 205.22 196.45 249.17 167 264 225 203 205 239 2 2 2 2 2 2 69413 1058 494 1058 1655;1656 2165;2166 2166 2 ALAPEYAK Unmodified 861.45962 0.45961853 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 5.33 0.471 2 1 44.192 44.192 2;3 0.0022329 11685 TMT1-4 97.798 52.717 729.32 1114.5 912.3 792.87 688.38 1251 690 1108 941 787 734 1192 4 4 4 4 4 4 150780 1059 530 1059 1657;1658;1659 2167;2168;2169;2170 2167 4 ALAPTWEQLALGLEHSETVK Unmodified 2192.1477 0.14773345 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 6.5 0.5 1 1 74.748 74.748 3 8.6169E-10 23253 TMT1-6 92.932 77.34 92.061 122.78 112.79 109.85 136.49 112.3 87 123 116 109 139 109 3 3 3 3 3 3 26110 1060 2205 1060 1660;1661 2171;2172;2173 2172 3 ALAQALK Unmodified 713.44357 0.44357454 1696 Q13363-2;Q13363;P56545;P56545-3;P56545-2 CTBP1;CTBP2 C-terminal-binding protein 1;C-terminal-binding protein 2 yes no 0 0 0 0 0 8 0 1 46.513 46.513 2 0.0082823 12250 TMT1-7 117.7 38.245 252.31 375.5 197.29 283.27 352.77 374.76 238 372 216 276 362 361 1 1 1 1 1 1 23021 1061 1696 1061 1662 2174 2174 1 ALASIDSK Unmodified 803.43888 0.43888309 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 2.16 1 1 1 45.774 45.774 2 0.0013035 12332 TMT1-5 143.11 72.194 8299.6 10082 9320.6 6704.7 8518.1 9777.3 7834 10148 9488 6789 8759 9400 4 4 4 4 4 4 797510 1062 776 1062 1663;1664;1665 2175;2176;2177;2178 2177 4 ALASLMTYK Unmodified 996.5314 0.53140327 387 P00367;P00367-3;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 63.432 63.432 3 0.0018714 17038 TMT1-8 89.355 57.42 61.546 80.172 47.745 51.998 47.819 91.377 58 80 51 51 51 87 1 1 1 1 1 1 14176 1063 387 1063 1666 2179 2179 1 ALASPEQLAQLPSSGVPR Unmodified 1819.9792 0.97921156 3005 Q9Y3Q8-2;Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 yes no 0 0 0 0 0 7 0 1 62.074 62.074 3 0.015873 18229 TMT1-6 41.988 21.035 76.951 139.75 113.21 79.276 75.316 137.5 73 138 116 80 80 131 1 1 1 1 1 1 54374 1064 3005 1064 1667 2180 2180 1 ALASQLQDSLK Unmodified 1172.6401 0.6401021 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.4 2.24 1 2 2 56.513 56.513 2;3 5.2532E-24 16703 TMT1-5 203.52 115.38 3355 4347.2 4112.9 3037.7 4098.1 4497.8 3170 4363 4183 3074 4199 4329 8 8 8 8 8 8 1495100 1065 776 1065 1668;1669;1670;1671;1672 2181;2182;2183;2184;2185;2186;2187;2188 2185 8 ALASQLQDSLKDLK Unmodified 1528.8461 0.84607213 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 7.5 0.5 1 1 63.597 63.597 3;4 2.7303E-10 18906 TMT1-6 124.16 95.836 283.72 398.11 309.29 261.1 305.09 300.43 268 397 320 261 313 290 2 2 2 2 2 2 22207 1066 776 1066 1673;1674 2189;2190 2189 2 ALAVEGK Unmodified 686.39629 0.39629 1546 Q01082;Q01082-3;Q01082-2;O15020-2;O15020 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 0 0 0 0 0 6 0 1 41.364 41.364 2 0.029153 10774 TMT1-5 91.041 43.974 184.15 239.15 226.6 156.69 249.07 335.08 174 240 230 160 256 321 1 1 1 1 1 1 22809 1067 1546 1067 1675 2191 2191 1 ALAVGGLGSIIR Unmodified 1125.687 0.68699271 2505 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 0 0 0 0 0 9 0 1 64.208 64.208 2 2.9435E-07 17361 TMT1-8 127.94 71.854 137.12 226.71 205.94 156.8 250.49 232.7 130 225 210 159 254 225 2 2 2 2 2 2 33582 1068 2505 1068 1676 2192;2193 2192 2 ALAVLEK Unmodified 742.45889 0.45889025 2006 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 0 7 0 1 54.438 54.438 2 0.027324 15237 TMT1-6 91.906 29.189 207.06 353.27 245.67 155.4 257.08 255.97 196 349 254 160 261 247 2 2 2 2 2 2 13879 1069 2006 1069 1677 2194;2195 2194 2 ALAVNPR Unmodified 739.43407 0.43407249 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 0 1 34.647 34.647 2 0.0011789 8058 TMT1-5 98.513 33.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1070 3010 1070 1678 2196 2196 1 ALCADLSPR Unmodified 1001.4964 0.49641475 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 5 0 1 44.494 44.494 2 0.0021844 11829 TMT1-4 77.318 44.197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1071 2717 1071 1679 2197 2197 1 ALCAEADR Unmodified 904.40727 0.40726539 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 2.5 0.5 1 1 31.73 31.73 2 0.013083 7999 TMT1-2 95.741 46.986 76.524 62.834 69.774 89.204 91.884 98.648 72 65 72 87 95 95 2 2 2 2 2 2 10138 1072 1737 1072 1680;1681 2198;2199 2199 2 ALCAVLGLR Unmodified 971.55862 0.55862107 2668 Q9HA90 EFCC1 EF-hand and coiled-coil domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 46.988 46.988 2 0.00034975 12815 TMT1-4 94.163 20.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1073 2668 1073 1682 2200 2200 1 ALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFAR Unmodified 3921.8956 0.89556487 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.25 0.433 6 2 89.922 89.922 4;5 7.1703E-41 28504 TMT1-7 126.05 124.71 302.51 390.38 320.81 255.81 329.56 363.7 285 391 328 256 336 350 12 15 15 15 13 16 594050 1074 3010 1074 1683;1684;1685;1686;1687;1688;1689;1690 2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216 2215 16 ALCGLDESK Unmodified 991.46445 0.46444592 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 5 0 1 46.969 46.969 2 0.010006 12823 TMT1-4 88.921 40.638 61.497 80.036 56.082 35.071 49.66 60.411 58 80 58 36 51 58 1 1 1 1 1 1 7758.2 1075 1042 1075 1691 2217 2217 1 ALCSGSPAER Unmodified 1046.4815 0.48149296 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 4 0 1 30.538 30.538 2 0.0023345 6544 TMT1-3 99.688 41.254 77.311 93.263 92.123 80.804 60.897 98.466 73 94 94 80 65 94 1 1 1 1 1 1 17753 1076 800 1076 1692 2218 2218 1 ALCTGEK Unmodified 777.36909 0.36908897 958;1204;1626 P49792;P30405;P30405-2;Q08752 RANBP2;PPIF;PPID E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase D no no 0 0 0 0 0 5.5 0.5 1 1 35.582 35.582 2 0.0091139 8462 TMT1-5 113.7 0 513.21 638.36 668.91 534.11 514.84 619.58 485 643 678 534 536 595 3 3 3 3 3 3 82634 1077 1204;958;1626 1077 1693;1694 2219;2220;2221 2221 3 ALDCSEVTVR Unmodified 1148.5496 0.54957253 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 2.5 0.5 1 1 42.28 42.28 2 5.1091E-05 12206 TMT1-2 146.27 122.05 153.8 188.39 139.66 115.53 155.84 181.04 145 189 145 116 160 174 1 1 1 1 1 1 23067 1078 2053 1078 1695;1696 2222;2223 2223 2 ALDDFVLGSAR Unmodified 1162.5982 0.59823728 240 O60831 PRAF2 PRA1 family protein 2 yes yes 0 0 0 0 0 5 0 1 63.164 63.164 2 8.5471E-06 19154 TMT1-4 126.29 62.807 61.036 102.5 114.48 102.7 104.6 136.66 58 102 116 102 109 131 1 1 1 1 1 1 13532 1079 240 1079 1697 2224 2224 1 ALDDILNLK Unmodified 1013.5757 0.57571092 112 O14920-4;O14920-2;O14920 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta yes no 0 0 0 0 0 6 0 1 72.162 72.162 2 0.0019781 22882 TMT1-5 108.98 73.097 38.009 74.424 40.959 44.715 49.73 45.485 36 73 44 44 51 44 1 1 1 1 1 1 4043.4 1080 112 1080 1698 2225 2225 1 ALDDMISTLK Unmodified 1105.5689 0.56891099 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6 0 1 69.646 69.646 2 3.6024E-05 21870 TMT1-5 148.96 67.363 77.21 124.28 82.689 80.795 91.261 97.6 73 123 87 80 94 94 1 1 1 1 1 1 9491.5 1081 1178 1081 1699 2226 2226 1 ALDDTAR Unmodified 760.37153 0.37153181 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 2 0 1 29.369 29.369 2 0.006827 6789 TMT1-1 130.77 58.411 153.97 205.03 98.513 142.48 131.82 174.26 145 204 109 138 138 167 1 1 1 1 1 1 23569 1082 816 1082 1700 2227 2227 1 ALDEGDIALLK Unmodified 1156.634 0.63395408 1033 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 0 5 0 1 65.822 65.822 2 2.0483E-06 20173 TMT1-4 134.68 56.342 99.069 230.96 105.56 125.51 140.48 158.02 94 225 116 123 145 152 1 1 1 1 1 1 16317 1083 1033 1083 1701 2228 2228 1 ALDELFEAIEQK Unmodified 1404.7137 0.71366097 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 5.5 0.5 1 1 86.435 86.435 3 9.2725E-09 28277 TMT1-4 129.84 74.856 261.63 301.61 315.16 237.52 261.68 255.83 247 305 319 239 269 247 3 3 3 3 3 3 43481 1084 1916 1084 1702;1703 2229;2230;2231 2230 3 ALDELMDGDIIVFQK Unmodified 1705.8597 0.85967328 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 5 0 1 83.83 83.83 3 4.0726E-05 27261 TMT1-4 68.277 58.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1085 2339 1085 1704 2232 2232 1 ALDESHNQNLK Unmodified 1267.6157 0.61567826 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 4 0 1 34.587 34.587 3 4.2034E-07 8160 TMT1-3 133.76 119.5 138.82 180.89 139.88 122.5 191.34 234.39 131 181 145 123 196 225 1 1 1 1 1 1 17845 1086 325 1086 1705 2233 2233 1 ALDEYYDK Unmodified 1015.4498 0.44984171 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 4 0 1 49.812 49.812 2 0.008661 14198 TMT1-3 101.54 68.279 200.31 192.91 254.64 194.91 220.06 184.53 189 198 255 196 225 179 1 1 1 1 1 1 20282 1087 1057 1087 1706 2234 2234 1 ALDFIASK Unmodified 863.47527 0.4752686 672;195 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707 ACTN1;ACTN3;ACTN4 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4 no no 0 0 0 0 0 6 2.92 1 1 2 61.186 61.186 2;3 8.4892E-05 17888 TMT1-6 155.88 74.777 8684.4 12606 11575 8363.5 11036 13555 8217 12580 11782 8473 11363 13011 6 6 6 6 6 6 1467100 1088 672;195 1088 1707;1708;1709;1710 2235;2236;2237;2238;2239;2240 2238 6 ALDGAFTEENR Unmodified 1221.5626 0.56258006 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.5 0.866 1 3 3 1 46.738 46.738 2 1.6884E-67 13664 TMT1-1 250.49 196.81 4456.3 5543.3 5202.2 4150.6 4642 5692.2 4208 5574 5307 4161 4807 5464 15 15 15 15 15 15 1388300 1089 3010 1089 1711;1712;1713;1714;1715;1716;1717;1718 2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255 2245 15 ALDGPEQMELEEGK Acetyl (N-term) 1586.7134 0.71340297 1416 P62195 PSMC5 26S protease regulatory subunit 8 yes yes 1 0 0 0 0 2 0 1 65.47 65.47 2 0.0012069 20904 TMT1-1 79.659 55.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1090 1416 1090 1719 2256 2256 1 ALDLDPENDSYK Unmodified 1378.6252 0.62523989 2398 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta yes yes 0 0 0 0 0 4 0 1 57.232 57.232 3 0.00075035 17125 TMT1-3 61.48 20.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091 2398 1091 1720 2257 2257 1 ALDLDSSCK Unmodified 1007.4594 0.45936054 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5 0 1 47.456 47.456 3 0.0011346 12959 TMT1-4 96.331 37.086 138.59 189.97 170.02 138.05 141.08 184.66 131 190 174 138 147 177 1 1 1 1 1 1 15688 1092 986 1092 1721 2258 2258 1 ALDLFSDNAPPPELLEIINEDIAK Unmodified 2636.3585 0.35851409 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 5.6 0.49 2 3 98.927 98.927 3;4;5 5.0197E-37 32830 TMT1-4 143.47 129.87 199.26 248.09 204.08 189.04 227.77 241.88 188 249 210 188 234 233 9 9 8 9 9 9 56420 1093 1827 1093 1722;1723;1724;1725;1726 2259;2260;2261;2262;2263;2264;2265;2266;2267 2262 9 ALDLFSDNAPPPELLEIINEDIAKR Unmodified 2792.4596 0.45962512 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 6 0 1 90.718 90.718 4 4.3518E-19 29843 TMT1-5 105.56 103.33 99.753 92.549 107.97 87.723 107.69 97.131 94 95 109 88 110 94 2 2 2 2 2 2 16674 1094 1827 1094 1727 2268;2269 2268 2 ALDLGTFTGYSALALALALPADGR Unmodified 2376.2689 0.26891122 2119 Q86VU5 COMTD1 Catechol O-methyltransferase domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 99.935 99.935 3 1.0088E-21 31036 TMT1-8 101.6 83.527 15.981 14.772 6.6071 0 7.322 0 15 15 7 0 7 0 1 1 1 0 1 0 1719.6 1095 2119 1095 1728 2270 2270 1 ALDLLDK Unmodified 786.44872 0.4487195 930 P28482 MAPK1 Mitogen-activated protein kinase 1 yes yes 0 0 0 0 0 6 0 1 61.747 61.747 2 0.011901 18822 TMT1-5 103.92 36.161 147.81 362.03 278.55 335.1 303.53 368.7 141 354 292 327 317 354 1 1 1 1 1 1 46477 1096 930 1096 1729 2271 2271 1 ALDQASEEIWNDFR Unmodified 1692.7744 0.77436375 1227 P50579-3;P50579-2;P50579 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 0 4 0 1 73.772 73.772 3 9.082E-08 23625 TMT1-3 112.96 96.078 30.781 13.126 45.398 28.455 28.506 15.177 29 15 44 29 29 15 1 1 1 1 1 1 5889.9 1097 1227 1097 1730 2272 2272 1 ALDTNYCFSSTEK Unmodified 1534.661 0.66097347 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 5 0 1 53.146 53.146 3 0.00037112 15206 TMT1-4 81.908 60.955 122.98 136.28 135.35 115.96 146.89 197.28 116 138 138 116 152 189 1 1 1 1 1 1 45387 1098 415 1098 1731 2273 2273 1 ALDTVLFGPPLLTR Unmodified 1511.8712 0.87116466 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 9 0 1 80.526 80.526 3 3.5998E-10 23797 TMT1-8 113.72 74.063 68.94 85.81 62.564 50.966 55.709 76.228 65 86 65 51 58 73 2 2 2 2 2 2 26794 1099 1724 1099 1732 2274;2275 2275 2 ALDVGSGSGILTACFAR Unmodified 1693.8458 0.84575455 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 8 0 1 67.155 67.155 2 3.3669E-26 20346 TMT1-7 163.93 142.38 30.561 51.368 49.983 44.074 55.256 98.627 29 51 51 44 58 94 1 1 1 1 1 1 13778 1100 840 1100 1733 2276 2276 1 ALDVMVSTFHK Unmodified 1246.638 0.63799361 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 0 8.5 0.5 1 1 60.069 60.069 3 8.0446E-07 15773 TMT1-8 116.74 80.066 1306 2386.1 1377 1262.8 1542.2 2319.3 1236 2347 1463 1257 1606 2217 4 4 4 4 4 4 455890 1101 899 1101 1734;1735 2277;2278;2279;2280 2280 4 ALDVSASDDEIAR Unmodified 1360.647 0.64703797 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 2 0 2 48.782 48.782 2;3 1.8887E-73 14420 TMT1-1 253.71 206.14 145.61 249.59 203.41 206.07 196.13 226.79 138 247 211 203 204 218 3 3 3 3 3 3 32149 1102 692 1102 1736;1737 2281;2282;2283 2282 3 ALDYYMLR Unmodified 1043.511 0.51100218 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 0.816 1 1 1 59.212 59.212 2 1.1199E-07 17807 TMT1-5 170.06 106.49 1500.6 1883.6 1377 1358.7 1383.3 2342 1415 1887 1440 1342 1459 2234 4 4 4 4 4 4 483020 1103 3010 1103 1738;1739;1740 2284;2285;2286;2287 2286 4 ALEAAQIIIDVLQLPMSK Unmodified 1952.1016 0.10163489 1624 Q08623;Q08623-4;Q08623-3 HDHD1 Pseudouridine-5'-phosphatase yes no 0 0 0 0 0 9 0 1 108.35 108.35 3 2.3059E-07 33633 TMT1-8 73.138 46.702 9.5541 18.481 1.6262 9.5434 10.455 17.824 9 18 2 9 11 17 2 2 1 2 2 2 1000.3 1104 1624 1104 1741 2288;2289 2288 2 ALEALVAK Unmodified 813.496 0.49600404 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 7 0 1 57.904 57.904 2 0.018927 16688 TMT1-6 89.752 53.946 265.92 331.51 291.18 249.28 235.52 301.35 251 333 299 248 246 289 1 1 1 1 1 1 37173 1105 705 1105 1742 2290 2290 1 ALEATTEHIR Unmodified 1139.5935 0.59348625 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.5 1.5 1 1 2 2 1 1 34.193 34.193 2;3 3.3109E-21 7660 TMT1-4 195.3 153.43 3873.5 4821.2 4221.9 3562.5 4147.7 5215.9 3656 4843 4334 3561 4293 5004 17 17 17 17 17 17 1773900 1106 3010 1106 1743;1744;1745;1746;1747;1748;1749;1750 2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307 2304 17 ALEATTEHIRQELAVFCSPEPPAK Unmodified 2693.3483 0.34830053 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6 0 2 68.094 68.094 4;5 1.541E-09 21241 TMT1-5 83.436 69.844 337.66 449.39 397.48 295.07 369.79 564.02 319 450 406 298 385 539 4 4 4 4 4 4 43344 1107 3010 1107 1751;1752 2308;2309;2310;2311 2311 4 ALEAVFGK Unmodified 833.4647 0.46470391 1056 P38159;P38159-2;P38159-3 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 0 7.5 0.5 1 1 61.803 61.803 2 0.0045747 18278 TMT1-7 124.08 55.658 582.65 717.83 472.23 632.43 617.94 927.91 549 719 505 615 649 887 2 2 2 2 2 2 80024 1108 1056 1108 1753;1754 2312;2313 2313 2 ALEDAFLAIDAK Unmodified 1275.6711 0.67106787 142 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 0 5 0 1 76.999 76.999 2 6.8072E-05 24568 TMT1-4 107.85 56.969 30.723 35.629 36.08 13.006 65.846 45.025 29 36 36 15 65 44 1 1 1 1 1 1 4808.8 1109 142 1109 1755 2314 2314 1 ALEDMFDALEGK Unmodified 1337.6173 0.61731774 870 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 0 5 0 1 85.023 85.023 3 0.0015489 27747 TMT1-4 75.78 44.953 23.216 44.789 27.599 21.874 28.039 37.576 22 44 29 22 29 36 1 1 1 1 1 1 2864.3 1110 870 1110 1756 2315 2315 1 ALEEAGFK Unmodified 863.43888 0.43888309 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 5 0 1 49.528 49.528 2 0.0045747 13833 TMT1-4 124.08 23.628 296.27 354.05 220.81 265.04 259.66 308.13 279 355 236 259 270 296 1 1 1 1 1 1 25499 1111 761 1111 1757 2316 2316 1 ALEEAMEQK Unmodified 1047.4907 0.49066067 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2.5 0.957 1 2 2 1 50.507 50.507 2;3 8.7664E-06 15378 TMT1-2 159.28 134.38 3376.4 4745.5 3244.5 2926.2 3480.2 5278.7 3187 4725 3398 2914 3629 5045 7 7 7 7 7 7 738290 1112 1019 1112 1758;1759;1760;1761;1762;1763 2317;2318;2319;2320;2321;2322;2323 2320 7 ALEEAMEQK Oxidation (M) 1063.4856 0.48557529 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 3.33 0.943 1 2 39.358 39.358 2;3 0.0042826 9939 TMT1-3 80.455 42.151 123.72 221.63 118.72 204.33 150.14 228.1 117 218 131 196 160 218 2 2 2 2 2 2 34875 1113 1019 1112 1764;1765;1766 2324;2325;2326 2326 177 3 ALEEAMEQKAELER Unmodified 1645.7981 0.79813565 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 4 0 1 57.841 57.841 3 0.00027517 17390 TMT1-3 81.651 53.354 84.632 123.52 98.265 95.657 65.328 193.21 80 123 102 94 73 183 1 1 1 1 1 1 10683 1114 1019 1113 1767 2327 2327 1 ALEEDLNQK Unmodified 1058.5244 0.52440364 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 2.5 0.5 1 1 46.917 46.917 2 2.5869E-06 13767 TMT1-1 164.96 82.503 122.48 212.62 153.23 146.34 160.43 219.28 116 210 160 145 167 210 2 2 2 2 2 2 19856 1115 325 1114 1768;1769 2328;2329 2328 2 ALEEPANDIKEDAIAPR Unmodified 1850.9374 0.93740633 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 1 3 0.816 1 1 1 52.521 52.521 3 5.0629E-10 15215 TMT1-3 113.77 80.367 468.56 555.01 488.73 397.04 470.39 544.1 442 559 501 398 485 523 5 5 5 5 5 5 58703 1116 2363 1115 1770;1771;1772 2330;2331;2332;2333;2334 2334 5 ALEGEAHR Unmodified 881.43553 0.43552905 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 2 0 1 23.107 23.107 3 0.0097596 4348 TMT1-1 74.486 38.301 15.864 29.557 13.707 15.035 28.866 22.628 15 29 15 15 29 22 1 1 1 1 1 1 2956.7 1117 799 1116 1773 2335 2335 1 ALEGLQYPFAVTSYGK Unmodified 1742.8879 0.88793694 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 8 0 1 72.791 72.791 3 1.5396E-11 22570 TMT1-7 119.92 100.63 107.72 206.81 114.55 125.41 116.9 174.69 102 203 123 123 123 167 1 1 1 1 1 1 30515 1118 704 1117 1774 2336 2336 1 ALEHFPMLQK Unmodified 1212.6325 0.6325143 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 55.253 55.253 3 0.00016174 15648 TMT1-7 105.4 78.723 76.743 146.73 142.19 123.75 117.52 158.68 73 145 145 123 123 152 1 1 1 1 1 1 15026 1119 1112 1118 1775 2337 2337 1 ALEHFTDLYDIKR Unmodified 1619.8308 0.83075641 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 8 0 1 56.629 56.629 4 0.007322 16242 TMT1-7 58.21 39.846 92.206 100.52 107.24 94.406 103.41 182.53 87 102 109 94 109 174 1 1 1 1 1 1 8428.3 1120 1540 1119 1776 2338 2338 1 ALEHLHSK Unmodified 933.50321 0.50321468 1130 P46734-2;P46734;P46734-3;P52564-2 MAP2K3;MAP2K6 Dual specificity mitogen-activated protein kinase kinase 3;Dual specificity mitogen-activated protein kinase kinase 6 no no 0 0 0 0 0 6 0 1 29.707 29.707 3 0.012216 6131 TMT1-5 70.919 22.636 46.586 57.627 56.455 58.555 78.395 75.581 44 58 58 58 80 73 1 1 1 1 1 1 2543.8 1121 1130 1120 1777 2339 2339 1 ALELCEILAK Unmodified 1158.6318 0.63184559 1177 P49354-2;P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 0 0 0 0 0 6 0 1 71.566 71.566 2 0.0032793 22626 TMT1-5 96.665 50.275 137.78 143.28 165.97 121.92 139.8 182.56 130 146 167 123 145 175 2 2 2 2 2 2 6755.9 1122 1177 1121 1778 2340;2341 2340 2 ALELDSNLYR Unmodified 1192.6088 0.60880197 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.57 1.59 1 1 3 2 56.114 56.114 2;3 1.5975E-47 16389 TMT1-5 200.07 131.16 3416.3 4709 3613.1 2664.3 3625.3 4054 3226 4699 3726 2697 3716 3900 6 6 6 6 6 6 1754400 1123 1019 1122 1779;1780;1781;1782;1783;1784;1785 2342;2343;2344;2345;2346;2347;2348;2349;2350 2349 9 ALELENDR Unmodified 958.47197 0.47197413 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2 0 1 41.589 41.589 2 0.006021 11601 TMT1-1 110.87 52.09 200.51 237.72 182.84 167.71 208.8 213.64 189 239 190 167 214 206 1 1 1 1 1 1 30408 1124 1577 1123 1786 2351 2351 1 ALELEQER Unmodified 986.50327 0.50327426 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2.5 0.5 1 1 41.979 41.979 2 1.4326E-08 11807 TMT1-1 178.65 57.728 2295.4 3664.7 2625.9 2385 2832.9 3073.5 2171 3631 2739 2374 2914 2959 2 2 2 2 2 2 459720 1125 894 1124 1787;1788 2352;2353 2352 2 ALELEQERK Unmodified 1114.5982 0.59823728 894 P26038 MSN Moesin yes yes 0 0 0 0 1 4 0 1 39.004 39.004 3 0.0005425 9949 TMT1-3 114.39 60.877 241.83 569.41 350.84 292.51 188.67 541.47 230 556 369 290 211 513 1 1 1 1 1 1 33757 1126 894 1125 1789 2354 2354 1 ALELFLESLLK Unmodified 1274.7486 0.74858991 1802 Q14919;Q14919-2 DRAP1 Dr1-associated corepressor yes no 0 0 0 0 0 9 0 1 100.86 100.86 2 1.0906E-08 31323 TMT1-8 145.89 90.21 15.795 44.473 12.796 15.39 12.872 61.461 15 43 15 15 15 58 1 1 1 1 1 1 2492.4 1127 1802 1126 1790 2355 2355 1 ALELTGLK Unmodified 843.50657 0.50656873 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 58.511 58.511 2 0.0030441 16949 TMT1-6 133.55 43.998 399.62 754.5 544.66 556.73 635.97 778.15 379 743 570 550 658 747 2 2 2 2 2 2 166030 1128 786 1127 1791 2356;2357 2357 2 ALENDPDCR Unmodified 1088.4557 0.45567214 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 2 0.816 1 1 1 31.194 31.194 2 5.9497E-10 7517 TMT1-1 179.36 161.99 283.06 491.26 340.27 266.23 399.29 383.03 268 485 354 269 406 370 4 4 4 4 4 4 88575 1129 690;691 1128 1792;1793;1794 2358;2359;2360;2361 2359 4 ALEQFATVVEAK Unmodified 1304.6976 0.69761697 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 2 68.161 68.161 2;3 3.8404E-07 21279 TMT1-5 123.95 112.35 138.7 196.74 146.5 122.51 169.88 189.16 131 196 152 123 174 182 2 2 2 2 2 2 49658 1130 1194 1129 1795;1796 2362;2363 2362 2 ALEQQVEEMK Unmodified 1203.5805 0.58053831 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2.83 1.07 1 1 2 2 52.989 52.989 2;3 2.1404E-06 15319 TMT1-3 159.83 100.48 1650.8 2440.9 1802.4 1727.5 1989.8 2615.7 1560 2427 1880 1713 2064 2507 7 7 7 7 7 7 670770 1131 1019 1130 1797;1798;1799;1800;1801;1802 2364;2365;2366;2367;2368;2369;2370 2369 7 ALEQQVEEMK Oxidation (M) 1219.5755 0.57545293 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 3 1 1 1 43.847 43.847 3 0.029424 12583 TMT1-1 63.408 37.749 192.75 277.47 191.42 238.06 276.6 246.88 182 276 203 233 283 239 2 2 2 2 2 2 30435 1132 1019 1130 1803;1804 2371;2372 2371 178 2 ALEQQVEEMKTQLEELEDELQATEDAK Unmodified 3146.4813 0.48128436 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 5 0 1 94.647 94.647 4 5.7572E-06 31300 TMT1-4 64.547 57.843 7.264 29.739 37.523 15.495 15.156 46.472 7 29 37 15 15 44 1 2 2 1 1 2 1613.9 1133 1019 1131 1805 2373;2374 2373 2 ALESALK Unmodified 730.4225 0.42250475 998 P33176;O60282;O60282-2 KIF5B;KIF5C Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C yes no 0 0 0 0 0 6 0 1 46.8 46.8 2 0.018037 12688 TMT1-5 99.139 40.893 230.84 326.21 240.54 158.52 165.59 326.8 218 325 248 161 176 311 1 1 1 1 1 1 180110 1134 998 1132 1806 2375 2375 1 ALESGDVNTVWK Unmodified 1317.6565 0.65648044 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 56.841 56.841 2 1.6413E-08 16692 TMT1-4 143.97 99.597 68.797 86.49 86.055 57.085 62.757 76.027 65 87 87 58 65 73 1 1 1 1 1 1 11268 1135 1139 1133 1807 2376 2376 1 ALESPERPFLAILGGAK Unmodified 1767.9883 0.98831969 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 7 3.03 1 2 2 69.449 69.449 3;4 1.3434E-30 19392 TMT1-8 151.44 117.44 2479.1 3677.1 2928.5 2550.7 3234.6 3735.7 2344 3659 3027 2549 3327 3591 8 8 8 8 8 8 487060 1136 397 1134 1808;1809;1810;1811;1812 2377;2378;2379;2380;2381;2382;2383;2384 2383 8 ALESSIAPIVIFASNR Unmodified 1686.9305 0.93047046 2955 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 0 8 0 1 77.618 77.618 2 5.6337E-08 24448 TMT1-7 109.16 80.201 39.356 35.181 28.09 21.978 20.961 30.316 37 36 29 22 22 29 1 1 1 1 1 1 4793.4 1137 2955 1135 1813 2385 2385 1 ALETMGLWVDCR Unmodified 1449.6745 0.67445547 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 0 6.33 0.471 2 1 69.527 69.527 2;3 1.0823E-33 21197 TMT1-6 212.72 191.04 277.19 409.09 315.16 260.96 294.08 377.5 262 407 326 261 305 362 4 4 4 4 4 4 96742 1138 711 1136 1814;1815;1816 2386;2387;2388;2389 2388 4 ALETNTHVK Unmodified 1011.5349 0.53490874 2788 Q9NYL9;Q9NZR1 TMOD3;TMOD2 Tropomodulin-3;Tropomodulin-2 yes no 0 0 0 0 0 5 0 1 32.808 32.808 3 2.3571E-06 7220 TMT1-4 156.16 95.188 526.71 689.95 520.39 469.69 459.02 838.64 497 690 541 466 487 799 1 1 1 1 1 1 70963 1139 2788 1137 1817 2390 2390 1 ALEVAEYLTPVLK Unmodified 1444.8177 0.81773211 2742 Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 0 7 0 2 79.452 79.452 2;3 0.00096853 25037 TMT1-6 76.073 51.218 61.472 87.522 53.884 74.329 61.451 90.988 58 87 58 72 65 87 2 2 2 2 2 2 28144 1140 2742 1138 1818;1819 2391;2392 2391 2 ALEYTIYNQELNETR Unmodified 1855.8952 0.89520716 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 4 0 1 59.931 59.931 3 5.688E-05 18145 TMT1-3 85.976 58.328 6.9442 52.954 50.38 35.692 34.733 37.385 7 51 51 36 36 36 1 1 1 1 1 1 7565.9 1141 2944 1139 1820 2393 2393 1 ALFEEVPELLTEAEK Unmodified 1716.8822 0.88218286 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 4.5 0.5 1 1 85.028 85.028 3 3.0361E-06 27620 TMT1-4 101.36 82.961 84.629 115.96 105.26 143.16 132.56 151.85 80 116 110 139 138 146 3 3 3 3 3 3 19426 1142 981 1140 1821;1822 2394;2395;2396 2395 3 ALFEEVPELLTEAEKK Unmodified 1844.9771 0.97714588 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 1 5 0 2 79.16 79.16 3;4 0.0017397 25461 TMT1-4 62.165 50.886 192.82 270.12 185.36 213.98 239.21 271.4 182 269 196 210 247 261 3 3 3 3 3 3 21239 1143 981 1141 1823;1824 2397;2398;2399 2399 3 ALFLIPR Unmodified 828.52216 0.52215921 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 0 9 0 1 64.142 64.142 2 0.012436 17403 TMT1-8 113.07 23.615 53.947 80.441 62.283 66.195 60.506 129.39 51 80 65 65 65 123 1 1 1 1 1 1 12717 1144 2892 1142 1825 2400 2400 1 ALFPGDSEIDQLFR Unmodified 1606.7991 0.79912193 1538 Q00526;P24941-2;P24941 CDK3;CDK2 Cyclin-dependent kinase 3;Cyclin-dependent kinase 2 yes no 0 0 0 0 0 6 0 1 79.863 79.863 3 0.0013772 25917 TMT1-5 68.277 41.736 15.81 21.85 29.414 12.871 36.038 29.886 15 22 29 14 36 29 1 1 1 1 1 1 2774.5 1145 1538 1143 1826 2401 2401 1 ALGADDSYYTAR Unmodified 1301.5888 0.58879481 1114 P43403;P43403-3;P43403-2 ZAP70 Tyrosine-protein kinase ZAP-70 yes no 0 0 0 0 0 3 0 1 44.782 44.782 2 7.4089E-07 13222 TMT1-2 117.99 93.132 53.919 95.475 54.148 58.549 86.017 66.835 51 94 58 58 87 65 1 1 1 1 1 1 16792 1146 1114 1144 1827 2402 2402 1 ALGALVDSCAPGLCPDWDSWDASK Unmodified 2590.1468 0.14682353 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 0 2 81.225 81.225 3;4 5.7986E-13 26413 TMT1-5 92.336 78.881 31.514 46.644 74.136 42.485 63.172 83.477 30 47 73 44 65 80 2 2 2 2 2 2 22822 1147 831 1145 1828;1829 2403;2404 2404 2 ALGALVDSCAPGLCPDWDSWDASKPVTNAR Unmodified 3228.4968 0.49683204 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6.67 0.471 2 4 74.579 74.579 3;4;5 5.1889E-15 22968 TMT1-6 91.655 85.162 385.48 514.58 441.65 400.62 487.06 510.57 364 515 455 399 500 492 5 6 6 6 6 6 778030 1148 831 1146 1830;1831;1832;1833;1834;1835 2405;2406;2407;2408;2409;2410;2411 2409 7 ALGDFDYK Unmodified 927.4338 0.43379771 1031 P35813-3;P35813;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 5 0 1 55.687 55.687 2 0.0064426 16219 TMT1-4 105.14 74.524 321.93 300.23 281.49 308.35 263.92 369.83 303 307 291 302 278 354 1 1 1 1 1 1 41143 1149 1031 1147 1836 2412 2412 1 ALGDLISATK Unmodified 987.56006 0.56006086 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 62.66 62.66 2 2.1787E-20 18515 TMT1-6 192.6 103.36 9894.3 12546 12055 8440.3 10375 13173 9347 12608 12231 8558 10722 12635 6 6 6 6 6 6 1608600 1150 3010 1148 1837;1838 2413;2414;2415;2416;2417;2418 2414 6 ALGEPITLFGEGPAER Unmodified 1655.8519 0.85188578 158 O43172-2;O43172 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 0 5 0 1 68.832 68.832 3 0.0049583 21383 TMT1-4 40.962 29.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1151 158 1149 1839 2419 2419 1 ALGFPEGLVIQAYFACEK Unmodified 2012.0077 0.0077344999 1302 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 0 8 0 1 86.632 86.632 3 3.0631E-10 27741 TMT1-7 108.18 66.629 76.966 124.68 123.48 63.2 83.934 121.26 73 124 124 66 87 116 3 3 3 3 3 3 9657.3 1152 1302 1150 1840 2420;2421;2422 2420 3 ALGFPESLVIQAYFACEK Unmodified 2042.0183 0.018299186 1301 P54725;P54725-3;P54725-2 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 0 8 0 1 87.574 87.574 4 0.0011832 28198 TMT1-7 55.097 31.871 15.883 37.163 4.2158 23.535 13.817 23.058 15 36 7 22 15 22 1 1 1 1 1 1 1540.3 1153 1301 1151 1841 2423 2423 1 ALGFPLERPK Unmodified 1126.6499 0.64987892 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 1 8 0 1 51.466 51.466 3 0.00020921 14115 TMT1-7 112.36 55.547 372.49 339.43 406.14 244.82 340.81 317.54 351 349 406 252 347 307 1 1 1 1 1 1 45492 1154 271 1152 1842 2424 2424 1 ALGFTDIVTVQVLPQCECR Unmodified 2205.0922 0.092209186 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 2 76.165 76.165 2;3 1.2405E-09 23800 TMT1-6 94.387 82.327 54.14 57.234 49.518 43.944 63.654 67.474 51 58 51 44 65 65 1 1 1 1 1 1 16345 1155 485 1153 1843;1844 2425;2426 2425 2 ALGHGVDLGHIYGDNLER Unmodified 1934.9599 0.9598731 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 4.5 0.5 1 1 50.914 50.914 4 1.541E-19 14340 TMT1-4 136.34 115.6 261.25 379.32 314.45 221.8 286.13 387.32 247 378 322 225 296 371 2 2 2 2 2 2 162920 1156 855 1154 1845;1846 2427;2428 2428 2 ALGHIAVALR Unmodified 1019.624 0.62399852 1097 P42356 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 0 0 0 0 0 9 0 1 45.566 45.566 3 0.0056847 10031 TMT1-8 64.485 26.926 23.295 28.819 27.882 37.034 34.671 37.387 22 29 29 36 36 36 1 1 1 1 1 1 3957.4 1157 1097 1155 1847 2429 2429 1 ALGISPFHEHAEVVFTANDSGPR Unmodified 2450.1979 0.19787154 446;1984 P02766;Q5U7I5 TTR Transthyretin no no 0 0 0 0 0 7 1 1 1 54.003 54.003 4 7.4432E-19 15706 TMT1-5 116.27 107.88 185.35 238.36 205.6 143.34 153.75 204.55 175 239 210 145 160 196 2 2 2 2 2 2 54287 1158 446;1984 1156 1848;1849 2430;2431 2430 2 ALGLDSANEK Unmodified 1016.5138 0.51383895 1706 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 0 0 5 0 1 45.679 45.679 2 0.00060235 12277 TMT1-4 112.36 58.864 76.737 178.01 116.75 118.18 87.929 144.6 73 174 123 116 94 138 1 1 1 1 1 1 11662 1159 1706 1157 1850 2432 2432 1 ALGLGVEQLPVVFEDVVLHQATILPK Unmodified 2784.579 0.57895239 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 8 0 2 95.252 95.252 4;5 1.8664E-06 31083 TMT1-7 65.854 52.925 38.111 74.1 59.947 42.514 48.512 83.896 36 73 59 43 51 80 2 3 2 3 3 3 12710 1160 1176 1158 1851;1852 2433;2434;2435 2434 3 ALGNICYDSHEGR Unmodified 1490.6572 0.6572255 1264 P52306-4;P52306;P52306-5 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 4 0 1 39.362 39.362 3 0.0038822 10060 TMT1-3 64.675 59.76 332.23 449.58 407.81 355.04 344.54 335.55 314 450 418 353 356 324 1 1 1 1 1 1 20824 1161 1264 1159 1853 2436 2436 1 ALGQNPTNAEVLK Unmodified 1353.7252 0.72522871 1356 P60660-2;P60660;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 0 0 0 4.75 2.28 1 1 1 1 49.676 49.676 3 9.1973E-12 13935 TMT1-5 148.62 110.59 2996.2 3940.1 3631.7 2747 3119.5 4569.4 2831 3950 3702 2765 3253 4370 8 8 8 8 8 8 850870 1162 1356 1160 1854;1855;1856;1857 2437;2438;2439;2440;2441;2442;2443;2444 2442 8 ALGSDHCPITLYLAL Unmodified 1642.8389 0.83887826 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 7 0 1 77.849 77.849 3 0.0011711 24437 TMT1-6 66.538 45.287 23.307 45.043 12.053 30.469 27.094 53.593 22 44 15 29 29 51 1 1 1 1 1 1 4803.1 1163 914 1161 1858 2445 2445 1 ALGSVGPVDLLVNNAAVALLQPFLEVTK Unmodified 2847.611 0.6109808 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 9 0 2 111.6 111.6 4 3.6173E-26 35246 TMT1-8 102.95 91.803 23.315 40.382 36.257 27.757 36.496 27.114 22 40 37 28 37 26 2 3 3 3 3 2 5013.5 1164 2098 1162 1859;1860 2446;2447;2448 2448 3 ALGTEVIQLFPEK Unmodified 1443.7973 0.79733102 373 O95831-3;O95831;O95831-2 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 7 0 2 74.152 74.152 2;3 3.4884E-16 23020 TMT1-6 174.84 130.64 169.3 209.38 221.94 181.59 218.18 257.08 160 211 225 182 225 247 3 3 3 3 3 3 33225 1165 373 1163 1861;1862 2449;2450;2451 2449 3 ALGYFAVVTGK Unmodified 1124.623 0.62299547 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 9 0 1 68.61 68.61 3 0.0013647 19091 TMT1-8 73.067 39.842 108.27 114.44 100.49 55.357 108.91 74.71 102 116 102 58 109 73 1 1 1 1 1 1 7826.1 1166 220 1164 1863 2452 2452 1 ALHELNPR Unmodified 948.51411 0.51411372 1979 Q5T6V5 C9orf64 UPF0553 protein C9orf64 yes yes 0 0 0 0 0 5 0 1 30.947 30.947 3 0.0020557 6464 TMT1-4 98.997 67.707 46.745 42.96 42.094 60.618 72.326 36.312 44 44 44 59 73 36 1 1 1 1 1 1 3985.4 1167 1979 1165 1864 2453 2453 1 ALHFVFK Unmodified 860.49086 0.49085908 2688 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 9 0 1 53.726 53.726 3 0.0021448 13303 TMT1-8 104.04 64.038 246.04 303.03 229.43 242.97 243.8 342.69 232 304 240 239 255 328 2 2 2 2 2 2 27869 1168 2688 1166 1865 2454;2455 2455 2 ALHHGIDLEK Unmodified 1131.6037 0.60365701 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 36.707 36.707 4 0.00071914 8884 TMT1-5 92.062 36.495 256.9 304.81 206.76 165.53 248.77 271.13 242 306 216 167 254 261 1 1 1 1 1 1 12965 1169 714 1167 1866 2456 2456 1 ALHLEQYTGLFEQHGLVWATECQGLSDTR Unmodified 3358.6041 0.6040743 2440 Q96P48-3;Q96P48 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 72.513 72.513 4 0.0227 22395 TMT1-6 28.443 20.821 69.175 56.243 48.109 75.191 92.031 82.654 65 58 51 73 94 80 1 1 1 1 1 1 6527.4 1170 2440 1168 1867 2457 2457 1 ALHSLLLR Unmodified 921.57599 0.5759857 1828 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 0 9 0 1 45.667 45.667 3 0.0010379 10082 TMT1-8 101.28 56.889 23.07 67.05 33.183 36.58 42.021 37.177 22 65 36 36 43 36 1 1 1 1 1 1 4798.9 1171 1828 1169 1868 2458 2458 1 ALHSVLQAVPLNELR Unmodified 1658.9468 0.94678922 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 8 0 1 61.538 61.538 3 5.3902E-06 18146 TMT1-7 98.895 76.902 139.33 128.34 98.409 79.73 98.073 144.31 131 131 102 80 102 138 1 1 1 1 1 1 18750 1172 1886 1170 1869 2459 2459 1 ALHTATFQALQR Unmodified 1355.731 0.73098279 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8.5 0.5 1 1 42.065 42.065 3 6.2677E-06 8747 TMT1-8 105.2 76.496 134.67 185.88 112.2 130.32 95.857 141.17 127 185 120 127 102 135 2 2 2 2 2 2 25679 1173 2066 1171 1870;1871 2460;2461 2461 2 ALIAAQYSGAQVR Unmodified 1346.7306 0.73064844 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 8 0 1 48.573 48.573 3 8.203E-05 12994 TMT1-7 94.538 58.01 169.59 193.99 186.66 119.93 238.09 186.15 160 196 189 124 239 181 2 2 2 2 2 2 57337 1174 904 1172 1872 2462;2463 2462 2 ALIADSGLK Unmodified 886.51238 0.51238239 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 7 0 1 52.662 52.662 2 0.00034054 14563 TMT1-6 140.5 34.554 160.94 218.12 178.03 136.35 206.02 214.78 152 218 183 138 210 207 1 1 1 1 1 1 23330 1175 2831 1173 1873 2464 2464 1 ALIAGGGAPEIELALR Unmodified 1549.8828 0.88279198 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 6 0 2 69.867 69.867 2;3 5.5916E-18 21957 TMT1-5 151.78 105.81 77.422 109.76 59.378 89.262 121.73 112.72 73 109 65 87 124 109 2 2 2 2 2 2 68364 1176 1233 1174 1874;1875 2465;2466 2465 2 ALIDQEVK Unmodified 914.5073 0.50729701 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 4.5 0.5 1 1 48.622 48.622 2 2.407E-11 13727 TMT1-3 150.28 52.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1177 291 1175 1876;1877 2467;2468 2467 2 ALIDSVIPK Unmodified 954.57498 0.57498264 938 P29466-2;P29466;Q5EG05-2;Q5EG05 CASP1;CARD16 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10;Caspase recruitment domain-containing protein 16 yes no 0 0 0 0 0 7 0 1 63.967 63.967 2 1.0307E-05 19081 TMT1-6 157.86 135.71 199.4 371.69 256.34 231.84 343.33 291.88 189 366 268 232 348 283 2 2 2 2 2 2 36803 1178 938 1176 1878 2469;2470 2470 2 ALIEHEMK Unmodified 969.49535 0.49535211 351 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 0 5 0 1 40.291 40.291 3 0.0024613 10153 TMT1-4 96.253 43.975 122.37 285.69 110.79 101.97 155.14 219.43 116 278 123 102 160 210 1 1 1 1 1 1 13520 1179 351 1177 1879 2471 2471 1 ALIEILATR Unmodified 998.61243 0.61243078 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 8.5 0.5 1 1 68.687 68.687 2 1.2324E-05 20954 TMT1-7 156.01 57.377 1055.1 1496 1027.4 986.82 1343.7 1464.7 996 1489 1078 982 1376 1410 4 4 4 4 4 4 235440 1180 555 1178 1880;1881 2472;2473;2474;2475 2472 4 ALIEMEK Unmodified 832.43644 0.43644025 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 5 0 1 52.75 52.75 2 0.011136 15077 TMT1-4 105.12 9.496 169.15 304.99 167.56 229.19 68.02 362.63 160 300 182 220 87 342 1 1 1 1 1 1 18995 1181 1837 1179 1882 2476 2476 1 ALIESYQNLTR Unmodified 1306.6881 0.68811492 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q8IZP0-11 ABI1 Abl interactor 1 yes no 0 0 0 0 0 7.5 0.5 1 1 56.515 56.515 2 1.0534E-31 16050 TMT1-6 209.21 189.95 207.47 268.04 250.43 187.45 223.63 303.82 196 269 255 189 232 291 3 3 3 3 3 3 50290 1182 2158 1180 1883;1884 2477;2478;2479 2477 3 ALIEVLQPLIAEHQAR Unmodified 1800.0258 0.025767826 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 8 0 1 72.523 72.523 3 3.2873E-09 22516 TMT1-7 114.63 75.362 115.44 168.03 112.07 86.691 149.59 157.76 109 167 117 88 152 152 2 2 2 2 2 2 66571 1183 860 1181 1885 2480;2481 2481 2 ALIFVSHGAGEHSGR Unmodified 1536.7797 0.77972389 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 8 0 1 37.193 37.193 4 1.138E-07 8490 TMT1-7 104.55 89.988 108.51 76.266 91.957 103.9 112.17 127.92 102 80 94 102 116 123 1 1 1 1 1 1 23803 1184 2482 1182 1886 2482 2482 1 ALIHSACVK Unmodified 997.53789 0.53788563 1620 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 8 0 1 37.393 37.393 3 0.0030878 8570 TMT1-7 80.787 73.308 215.92 167.62 176.86 175.89 199.64 164.86 203 174 181 174 204 160 1 1 1 1 1 1 15839 1185 1620 1183 1887 2483 2483 1 ALINADELASDVAGAEALLDR Unmodified 2126.0855 0.085527129 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 90.442 90.442 3 7.6976E-24 30023 TMT1-3 130.01 99.862 7.4331 31.419 0 23.51 28.477 22.639 7 30 0 22 29 22 1 2 0 2 2 2 10461 1186 1737 1184 1888 2484;2485 2485 2 ALIPLALEGTDVGQTK Unmodified 1624.9036 0.903587 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 7 0 1 71.659 71.659 2 1.1452E-06 22060 TMT1-6 102.87 70.349 23.342 28.949 19.902 45.956 50.479 22.012 22 29 22 44 51 22 1 1 1 1 1 1 5669.5 1187 2642 1185 1889 2486 2486 1 ALIQCAK Unmodified 802.43711 0.43710895 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.33 3.09 1 1 1 43.151 43.151 2 0.001712 10698 TMT1-7 145.87 42.158 1665.3 2440.9 2254.7 1896.7 2134.8 2672.3 1576 2435 2305 1895 2212 2564 5 5 5 5 5 5 391040 1188 776 1186 1890;1891;1892 2487;2488;2489;2490;2491 2489 5 ALIVVPYAEGVIPDEAK Unmodified 1782.9768 0.97675195 1595 Q05519-2;Q05519 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 0 6 0 1 75.083 75.083 3 1.0753E-05 24000 TMT1-5 84.842 66.925 37.838 81.503 63.713 34.478 57.017 60.201 36 80 65 36 58 58 1 1 1 1 1 1 12743 1189 1595 1187 1893 2492 2492 1 ALKDEEK Unmodified 831.4338 0.43379771 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 5 0 1 33.846 33.846 3 0.015033 7638 TMT1-4 84.743 10.442 3073.2 2439 3497.7 2641.8 4080.7 2063.5 2895 2542 3491 2678 4085 2045 1 1 1 1 1 1 532870 1190 519;520;521;518 1188 1894 2493 2493 1 ALKEDDPK Unmodified 914.47091 0.4709115 1382 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 1 5 0 1 35.286 35.286 3 0.032367 8160 TMT1-4 64.42 30.535 332.97 403.07 322.97 257.53 393.28 356.55 314 405 333 260 399 345 1 1 1 1 1 1 17132 1191 1382 1189 1895 2494 2494 1 ALKPPPIK Unmodified 862.56402 0.56402403 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 9 0 1 44.349 44.349 3 0.0029684 9521 TMT1-8 83.265 51.33 984.89 1508.1 906.26 928.15 1186 1321 930 1494 964 919 1218 1271 2 2 2 2 2 2 39122 1192 675 1190 1896 2495;2496 2495 2 ALLAEHLLKPLPADK Acetyl (Protein N-term) 1669.9767 0.97669237 2797 Q9NZD2 GLTP Glycolipid transfer protein yes yes 0 1 0 0 1 7 0 1 69.582 69.582 3 0.00049436 21241 TMT1-6 43.024 21.082 123.2 129.34 103.93 126.32 102.45 167.64 116 131 109 123 109 160 1 1 1 1 1 1 17376 1193 2797 1191 1897 2497 2497 1 ALLAGGPDEADR Unmodified 1183.5833 0.5833155 2643 Q9H3U5-2;Q9H3U5-3;Q9H3U5;Q9H3U5-5;Q9H3U5-6 MFSD1 Major facilitator superfamily domain-containing protein 1 yes no 0 0 0 0 0 3 0.816 1 1 1 45.37 45.37 2 5.0085E-10 12326 TMT1-3 156.48 126.67 116.11 158.2 188.02 143.63 193.78 135.18 110 159 189 145 196 132 3 3 3 3 3 3 23247 1194 2643 1192 1898;1899;1900 2498;2499;2500 2500 3 ALLAGQAALLQALMELAPASAPAR Unmodified 2346.3093 0.30933625 2537 Q9BTY7 HGH1 Protein HGH1 homolog yes yes 0 0 0 0 0 9 0 1 101.56 101.56 3 0.019519 31607 TMT1-8 33.342 22.707 0 0 7.2524 7.2188 0 7.462 0 0 7 7 0 7 0 0 1 1 0 1 1970.2 1195 2537 1193 1901 2501 2501 1 ALLALCGGED Unmodified 1017.4801 0.48009598 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 4.5 0.5 1 1 68.884 68.884 2 0.00036106 21353 TMT1-4 121.29 119.8 123.04 267.22 194.53 189.91 211.53 226.35 117 262 203 188 218 218 3 3 3 3 3 3 124040 1196 555 1194 1902;1903 2502;2503;2504 2503 3 ALLALNHGLDK Unmodified 1163.6663 0.66625727 1724 Q13586 STIM1 Stromal interaction molecule 1 yes yes 0 0 0 0 0 8 0 1 52.971 52.971 3 1.0374E-06 14765 TMT1-7 128.08 73.532 260.56 495.06 331.43 316.36 260.85 509.57 247 487 348 312 280 485 2 2 2 2 2 2 24102 1197 1724 1195 1904 2505;2506 2506 2 ALLANALTSALR Unmodified 1212.719 0.71902112 1340 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 0 9 0 1 70.216 70.216 2 9.5402E-09 19749 TMT1-8 139.15 88.187 98.954 225.24 129.8 123.6 164.92 118.95 94 220 138 123 167 116 1 1 1 1 1 1 24977 1198 1340 1196 1905 2507 2507 1 ALLCYNR Acetyl (Protein N-term) 950.46439 0.46438634 2862 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 1 0 0 0 3 0 1 55.938 55.938 2 0.0039487 17570 TMT1-2 62.842 50.937 15.808 21.845 29.738 5.5929 15.192 7.0285 15 22 29 7 15 7 1 1 1 1 1 1 3416.7 1199 2862 1197 1906 2508 2508 1 ALLDASETTSTR Unmodified 1263.6307 0.63065962 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 0 4 0 1 44.419 44.419 2 6.6743E-69 12070 TMT1-3 244.28 177.85 77.208 124.28 83.023 73.306 81.601 175.69 73 123 87 73 87 167 1 1 1 1 1 1 16239 1200 1769 1198 1907 2509 2509 1 ALLDQEGNR Unmodified 1014.5094 0.50942227 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 3.5 0.5 1 1 38.626 38.626 2 0.0017644 10851 TMT1-2 113.66 99.123 153.42 248.85 152.32 114.37 177.33 196.41 145 246 160 116 181 189 2 2 2 2 2 2 12649 1201 2085 1199 1908;1909 2510;2511 2510 2 ALLDSLQLGPDSLTVHLIHEVTK Unmodified 2498.3744 0.37443893 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 8 0 1 80.542 80.542 4 2.7972E-13 25600 TMT1-7 100.64 88.335 170.42 240.73 187.54 207.13 247.88 241.3 161 240 196 204 254 233 3 3 3 3 3 3 38616 1202 1792 1200 1910 2512;2513;2514 2513 3 ALLEEYNK Unmodified 978.50221 0.50221163 313 O75935;O75935-3 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 0 5 0 1 51.761 51.761 3 0.0024613 14677 TMT1-4 96.253 53.226 92.104 131.53 98.14 86.827 128.37 135.98 87 131 102 87 131 131 1 1 1 1 1 1 9852.1 1203 313 1201 1911 2515 2515 1 ALLEFLQR Unmodified 988.57057 0.57056597 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 9 0 1 70.573 70.573 2 0.0071206 19842 TMT1-8 104.75 58.181 238.34 283.57 278.67 209.3 250.72 216.71 225 286 283 211 256 210 2 2 2 2 2 2 40394 1204 2172 1202 1912 2516;2517 2516 2 ALLELQEYFGSLAA Unmodified 1523.7872 0.78716026 2571 Q9BY32;Q9BY32-2;Q9BY32-3 ITPA Inosine triphosphate pyrophosphatase yes no 0 0 0 0 0 7 0 2 102.18 102.18 2;3 0.0006458 33170 TMT1-6 83.862 56.732 2.0409 10.354 8.8924 4.8061 13.852 7.2665 2 10 9 5 14 7 1 1 1 1 2 1 11758 1205 2571 1203 1913;1914 2518;2519 2519 2 ALLELQLEPEELYQTFQR Unmodified 2219.1474 0.1473991 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6 0 1 86.075 86.075 3 2.794E-06 28237 TMT1-5 87.85 77.929 38.123 50.996 41.69 59.844 56.657 36.759 36 51 44 58 58 36 1 1 1 1 1 1 16115 1206 685 1204 1915 2520 2520 1 ALLELVPWR Unmodified 1095.6441 0.64406526 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 9 0 1 77.728 77.728 2 0.0027894 22688 TMT1-8 107.66 39.672 46.374 112.08 45.909 51.954 55.957 67.693 44 109 51 51 58 65 1 1 1 1 1 1 8343.5 1207 2935 1205 1916 2521 2521 1 ALLENLLQNIQSK Unmodified 1482.8406 0.84059282 141 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase yes yes 0 0 0 0 0 9 0 1 82.917 82.917 3 0.0088292 24675 TMT1-8 52.484 29.016 69.017 48.249 81.452 41.881 72.125 67.232 65 51 80 44 73 65 1 1 1 1 1 1 7804.1 1208 141 1206 1917 2522 2522 1 ALLEVLGR Unmodified 869.53345 0.53345218 1905 Q16775;Q16775-2 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 0 0 0 8 0 1 63.676 63.676 2 0.0055776 18970 TMT1-7 116.9 59.092 91.728 161.79 135.73 76.656 143.24 143.02 87 160 138 80 145 138 1 1 1 1 1 1 18436 1209 1905 1207 1918 2523 2523 1 ALLEVVQSGGK Unmodified 1099.6237 0.62372375 108 O14818;O14818-2;Q8TAA3-2;Q8TAA3-5;Q8TAA3 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 0 0 0 0 0 7.5 0.5 1 1 60.579 60.579 3 0.00040794 17748 TMT1-7 94.616 61.387 308.05 341.31 235.15 226.14 306.67 270.54 290 344 247 225 312 262 2 2 2 2 2 2 55829 1210 108 1208 1919;1920 2524;2525 2525 2 ALLFIPR Unmodified 828.52216 0.52215921 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 9 0 1 63.319 63.319 2 0.013299 17064 TMT1-8 109.88 25.696 591.37 566.35 397.2 503.88 774.69 708.1 556 576 422 496 786 685 1 1 1 1 1 1 151150 1211 561 1209 1921 2526 2526 1 ALLFVPR Unmodified 814.50651 0.50650915 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 9 0 1 59.563 59.563 2 0.013811 15583 TMT1-8 106.84 0 712.6 978.58 771.52 664.75 1030.9 922.52 673 977 798 668 1045 893 2 2 2 2 2 2 153330 1212 545 1210 1922 2527;2528 2528 2 ALLGLVQDVIGDLHQCQR Unmodified 2034.068 0.068043346 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8.5 0.5 1 1 87.237 87.237 3 3.9934E-31 26328 TMT1-8 153.22 140.86 84.805 116.45 75.2 88.57 108.43 74.724 80 116 80 87 110 73 3 3 3 3 3 3 28117 1213 2066 1211 1923;1924 2529;2530;2531 2531 3 ALLGYADNQCK Unmodified 1251.5918 0.59177169 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 6.5 0.5 1 1 51.341 51.341 3 6.6463E-07 14636 TMT1-5 129.16 68.183 299.37 478.87 315.72 346.36 400.94 410.7 283 474 334 341 412 396 2 2 2 2 2 2 39758 1214 2688 1212 1925;1926 2532;2533 2532 2 ALLLLCGEDD Unmodified 1117.5325 0.53252548 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 4.5 0.5 1 1 79.419 79.419 2 6.9461E-05 25848 TMT1-3 143 135.81 145.84 211.38 197.08 229.64 241.37 218.04 138 211 204 225 248 211 4 4 4 4 4 4 122400 1215 578 1213 1927;1928 2534;2535;2536;2537 2535 4 ALLLLLVGGVDQSPR Unmodified 1549.9192 0.91917749 1004 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 0 9 0 1 88.771 88.771 3 0.00034238 26939 TMT1-8 64.675 49.524 23.368 21.469 21.743 14.704 21.003 38.843 22 22 22 15 22 37 1 1 1 1 1 1 2165.9 1216 1004 1214 1929 2538 2538 1 ALLLPDYYLVTVMLSGIK Unmodified 2008.1319 0.13187238 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 106.24 106.24 3 2.465E-14 33215 TMT1-8 111.92 76.971 24.274 46.832 28.415 24.976 34.859 48.041 23 46 30 25 36 46 2 2 2 2 2 2 6372.3 1217 2071 1215 1930 2539;2540 2539 2 ALLLSTYIK Unmodified 1020.6219 0.62193284 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 9 0 1 68.218 68.218 2 6.5255E-07 18946 TMT1-8 170.22 116.74 130.64 151.3 97.092 79.38 120.88 120.21 123 152 102 80 123 116 1 1 1 1 1 1 15315 1218 335;369 1216 1931 2541 2541 1 ALLLTDQHLYK Unmodified 1313.7343 0.73433683 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 8 0 1 55.96 55.96 3 5.279E-05 15965 TMT1-7 104.79 92.298 340.24 475.28 302.16 359.36 275.51 512.35 321 473 322 350 296 488 1 1 1 1 1 1 42263 1219 20 1217 1932 2542 2542 1 ALLLVGDVAQAADVAIEHR Unmodified 1960.0742 0.074174581 2624 Q9H269-2;Q9H269 VPS16 Vacuolar protein sorting-associated protein 16 homolog yes no 0 0 0 0 0 6 0 1 79.466 79.466 3 3.992E-06 25748 TMT1-5 78.674 69.42 46.823 34.544 36.038 13.58 35.456 45.892 44 36 36 15 36 44 1 1 1 1 1 1 8909.8 1220 2624 1218 1933 2543 2543 1 ALLPHVLCK Unmodified 1049.6056 0.60557126 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 9 0 1 52.369 52.369 3 0.00026673 12682 TMT1-8 114.93 85.459 153.47 246.82 146.26 107.52 154.12 241.85 145 244 154 109 160 231 1 1 1 1 1 1 32735 1221 1915 1219 1934 2544 2544 1 ALLPILQWHK Unmodified 1217.7285 0.72846359 2811 Q9P0J1;Q9P0J1-2 PDP1 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial yes no 0 0 0 0 0 9 0 1 69.163 69.163 3 0.0015531 19304 TMT1-8 80.219 43.027 23.047 51.875 49.972 44.483 33.522 60.871 22 51 51 44 36 58 1 1 1 1 1 1 6927.1 1222 2811 1220 1935 2545 2545 1 ALLQEMPLTALLR Unmodified 1467.8483 0.84832073 626 P10155;P10155-3;P10155-5;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 9 0 1 83.488 83.488 3 0.00061838 24904 TMT1-8 70.622 37.501 23.417 21.604 13.451 30.642 13.49 23.067 22 22 15 29 15 22 1 1 1 1 1 1 4322.7 1223 626 1221 1936 2546 2546 1 ALLQMVQQFAVDFEK Unmodified 1765.9073 0.90729217 1591;2942 Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM1;DNM3 Dynamin-1;Dynamin-3 no no 0 0 0 0 0 9 0 1 99.194 99.194 3 1.0124E-22 30717 TMT1-8 148.52 120.55 69.281 41.429 42.804 44.196 71.485 52.326 65 44 44 44 72 51 2 2 2 2 2 2 8253.2 1224 1591;2942 1222 1937 2547;2548 2547 2 ALLQSHPR Unmodified 920.5192 0.5191991 1108 P43155-3;P43155-2;P43155 CRAT Carnitine O-acetyltransferase yes no 0 0 0 0 0 7 0 1 29.363 29.363 3 0.020391 5384 TMT1-6 62.659 52.672 15.812 21.857 29.011 21.913 21.477 15.377 15 22 29 22 22 15 1 1 1 1 1 1 585.93 1225 1108 1223 1938 2549 2549 1 ALLSNIEK Unmodified 886.51238 0.51238239 2727 Q9NRG1-2;Q9NRG1 PRTFDC1 Phosphoribosyltransferase domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 53.844 53.844 2 0.013266 15056 TMT1-6 95.502 22.954 99.536 107.06 132.07 61.578 84.815 97.784 94 109 131 65 87 94 1 1 1 1 1 1 10217 1226 2727 1224 1939 2550 2550 1 ALLSTLHTVLWDGESR Unmodified 1796.9421 0.94209778 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 9 0 1 70.857 70.857 3 2.8863E-06 20007 TMT1-8 87.519 61.395 15.475 44.663 66.366 27.086 34.835 45.91 15 44 65 29 36 44 1 1 1 1 1 1 6489.9 1227 119 1225 1940 2551 2551 1 ALLTLADGR Unmodified 928.53418 0.53418046 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 7 0 1 55.285 55.285 2 0.0004924 15625 TMT1-6 136.27 56.556 160.99 206.41 178.32 97.066 201.6 182.93 152 207 181 102 203 177 1 1 1 1 1 1 21927 1228 670 1226 1941 2552 2552 1 ALLTPVAIAAGR Unmodified 1151.7026 0.70264277 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 61.318 61.318 2 5.2017E-31 16225 TMT1-8 209.73 155.31 245.59 309.32 300.59 288.94 305.38 407.03 232 311 308 286 318 390 2 2 2 2 2 2 53047 1229 389 1227 1942 2553;2554 2553 2 ALLTQLLDK Unmodified 1013.6121 0.61209643 1650 Q12851-2;Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 yes no 0 0 0 0 0 9 0 1 73.13 73.13 2 0.0017859 20919 TMT1-8 114.51 50.249 46.872 34.679 27.771 28.96 57.527 52.724 44 36 29 29 58 51 1 1 1 1 1 1 3712.6 1230 1650 1228 1943 2555 2555 1 ALLVTASQCQQPAENK Unmodified 1756.8778 0.87778296 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 7.5 0.5 1 1 49.827 49.827 3 8.2248E-29 13427 TMT1-6 184 163.99 729.12 1010.1 853.78 741.21 831.34 964.46 689 1009 879 739 859 927 3 3 3 3 3 3 293220 1231 1555;1556 1229 1944;1945 2556;2557;2558 2556 3 ALLYEAIGYSETAVDPTLLK Unmodified 2166.146 0.14600212 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 7 0 1 87.866 87.866 3 8.3422E-07 28269 TMT1-6 80.975 63.896 31.01 21.317 0 31.439 13.71 15.599 29 22 0 29 15 15 1 1 0 1 1 1 2995.3 1232 2447 1230 1946 2559 2559 1 ALLYEDALYTVLHR Unmodified 1675.8934 0.89335667 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 7 0 1 74.156 74.156 3 2.4127E-22 23107 TMT1-6 171.62 135.94 107.69 182.99 139.46 132.66 117.61 174.67 102 181 145 131 124 167 2 2 2 2 2 2 80763 1233 2066 1231 1947 2560;2561 2561 2 ALLYLCGGDD Unmodified 1095.4907 0.49066067 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 5.67 0.471 1 2 72.808 72.808 2 4.7328E-05 22992 TMT1-4 146.94 136.53 107.53 206.28 147.17 122.6 163.35 165.9 102 203 153 123 167 160 2 2 2 2 2 2 103070 1234 534 1232 1948;1949;1950 2562;2563;2564;2565 2563 4 ALMAAEDK Unmodified 847.41095 0.41095378 595;593 P09493-3;P09493-10;P09493-8 no no 0 0 0 0 0 5 0 1 44.139 44.139 2 0.00045388 11680 TMT1-4 151.27 81.001 328.49 502.5 630.31 487.3 685.04 660.56 312 503 632 492 698 638 1 1 1 1 1 1 50400 1235 593;595 1233 1951 2566 2566 1 ALMDEVVK Unmodified 903.47355 0.47355404 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 5 0 1 55.33 55.33 2 0.0025466 16065 TMT1-4 136.16 69.473 581.12 1021.4 652.28 651.11 739.28 1085.4 550 1007 689 644 771 1038 2 2 2 2 2 2 208380 1236 397 1234 1952 2567;2568 2567 2 ALMGLYHGQVLCK Unmodified 1488.7581 0.75812552 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 9 0 1 56.076 56.076 3 0.00010239 14170 TMT1-8 80.979 57.374 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1237 1076 1235 1953 2569 2569 1 ALMLQGVDLLADAVAVTMGPK Unmodified 2112.1323 0.13228309 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 0 8.67 0.471 1 2 105.09 105.09 3;4 3.0477E-19 32836 TMT1-8 112.58 91.629 91.286 90.224 90.214 77.581 63.987 134.62 86 92 92 77 69 128 4 4 4 4 4 4 24679 1238 638 1236 1954;1955;1956 2570;2571;2572;2573 2573 4 ALMLQGVDLLADAVAVTMGPK Oxidation (M) 2128.1272 0.12719771 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 0 9 0 1 95.809 95.809 3 1.2634E-08 29539 TMT1-8 76.118 53.466 15.918 17.835 14.601 10.744 21.734 22.832 15 18 15 11 22 22 1 1 1 1 1 1 4083.1 1239 638 1236 1957 2574 2574 119 1 ALMPVLLQGQAR Unmodified 1295.7384 0.73837635 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 9 0 1 63.452 63.452 2 0.001928 17085 TMT1-8 86.136 28.855 46.508 64.967 63.247 66.246 54.75 83.718 44 65 65 65 58 80 1 1 1 1 1 1 10972 1240 378 1237 1958 2575 2575 1 ALNAGYILNGLTVSIPGLER Unmodified 2070.1473 0.14733952 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 9 0 1 85.758 85.758 3 0.045506 25807 TMT1-8 29.729 16.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1241 3047 1238 1959 2576 2576 1 ALNALCDGLIDELNQALK Unmodified 1970.0143 0.014276441 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 2 2 90.677 90.677 3;4 3.2279E-19 29366 TMT1-6 132.59 106.15 139.61 236.16 139.67 101.18 163.55 219.19 132 233 147 103 168 210 6 6 6 6 6 6 24228 1242 952 1239 1960;1961;1962;1963 2577;2578;2579;2580;2581;2582 2581 6 ALNEGGFQSIPK Unmodified 1259.651 0.65100113 1882 Q16134-3;Q16134 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes no 0 0 0 0 0 6 0 1 53.655 53.655 3 0.012588 15494 TMT1-5 56.122 33.924 99.804 122.91 73.632 113.37 73.236 152.48 94 123 80 109 80 145 1 1 1 1 1 1 10912 1243 1882 1240 1964 2583 2583 1 ALNEITESGR Unmodified 1088.5462 0.54620171 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 3 0.816 1 1 1 42.374 42.374 2 1.6598E-06 11153 TMT1-3 161.51 103.7 426.35 765.34 552.18 443.13 724.1 831.07 404 755 573 448 739 799 3 3 3 3 3 3 108650 1244 485 1241 1965;1966;1967 2584;2585;2586 2586 3 ALNFGGIGVVVGHELTHAFDDQGR Unmodified 2508.251 0.25096975 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 7 0 1 75.012 75.012 4 6.1703E-18 23422 TMT1-6 105.61 98.502 38.289 35.27 27.026 45.847 33.716 53.404 36 36 29 44 36 51 1 1 1 1 1 1 12798 1245 1106 1242 1968 2587 2587 1 ALNFLVNEFLLK Unmodified 1419.8126 0.81258715 2823 Q9P260;Q9P260-2 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 yes no 0 0 0 0 0 9 0 1 92.109 92.109 2 5.1184E-07 28150 TMT1-8 122.51 72.697 23.37 21.474 21.401 22.367 21.456 15.378 22 22 22 22 22 15 1 1 1 1 1 1 3806.1 1246 2823 1243 1969 2588 2588 1 ALNIPEQLPQWDMCNFLVNLQYR Unmodified 2861.3993 0.39929024 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 9 0 1 91.753 91.753 3 0.002618 28020 TMT1-8 45.395 33.092 7.3497 15.227 14.197 0 0 0 7 15 14 0 0 0 1 1 1 0 0 0 5596.3 1247 634 1244 1970 2589 2589 1 ALNLAYSSIYGSYR Unmodified 1576.7886 0.78855725 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 9 0 1 64.16 64.16 2 1.311E-17 17373 TMT1-8 159.77 126.58 30.72 36.701 35.655 21.098 43.78 37.127 29 37 36 22 44 36 1 1 1 1 1 1 6970.1 1248 2079 1245 1971 2590 2590 1 ALNSIIDVYHK Unmodified 1271.6874 0.68738664 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 6.25 3.11 1 1 1 1 58.37 58.37 3 8.118E-08 16633 TMT1-6 150.09 106.7 2716.3 3963.4 2854.9 2744.4 4209.3 4211 2566 3942 2984 2739 4283 4063 6 6 6 6 6 6 662220 1249 486 1246 1972;1973;1974;1975 2591;2592;2593;2594;2595;2596 2592 6 ALNVEPDGTGLTCSLAPNIISQL Unmodified 2382.2101 0.21007572 947 P30044-2;P30044;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 90.913 90.913 3 1.9494E-09 30004 TMT1-5 86.76 71.671 140.22 159.05 103.83 110.96 105.58 152.62 132 160 110 109 110 146 4 4 4 4 3 4 106180 1250 947 1247 1976;1977 2597;2598;2599;2600 2600 4 ALNVFYYLTYEGAVNLNSITDPVLR Unmodified 2844.4698 0.46979588 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 101.96 101.96 3 3.404E-16 31794 TMT1-8 85.062 72.172 0 0 0 7.5348 6.1765 23.276 0 0 0 7 7 22 0 0 0 1 1 1 1848.6 1251 1229 1248 1978 2601 2601 1 ALPAPIEK Unmodified 837.496 0.49600404 420;422 P0DOX5;P01857;P01860 IGHG1;IGHG3 Ig gamma-1 chain C region;Ig gamma-3 chain C region no no 0 0 0 0 0 6 0 1 49.704 49.704 2 0.0088247 13994 TMT1-5 101.33 56.015 486.78 607.67 447.39 353.42 421.87 705.38 459 609 464 355 442 673 2 2 2 2 2 2 118270 1252 420;422 1249 1979 2602;2603 2602 2 ALPAVQQNNLDEDLIR Unmodified 1807.9428 0.94282606 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4 0 1 61.438 61.438 3 4.1084E-18 18740 TMT1-3 142.97 134.15 122.37 205.84 177.47 145.71 117.01 174.68 116 204 182 145 124 167 2 2 2 2 2 2 79378 1253 845 1250 1980 2604;2605 2604 2 ALPAVQQNNLDEDLIRK Unmodified 1936.0378 0.037789075 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 5.67 0.471 1 2 57.007 57.007 3;4 5.2679E-25 16926 TMT1-5 151.9 133.17 176.71 278.74 180.15 151.12 227.72 233.35 167 276 189 152 232 225 2 2 2 2 2 2 27428 1254 845 1251 1981;1982;1983 2606;2607;2608 2608 3 ALPDGPVTIVIR Unmodified 1249.7394 0.73942221 1743 Q14005-3;Q14005-2;Q14005 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 0 6.5 0.5 1 1 63.198 63.198 2 0.0042039 18746 TMT1-6 78.932 28.971 138.48 212.33 169.44 145.22 168.31 235.05 131 211 175 145 175 225 2 2 2 2 2 2 33124 1255 1743 1252 1984;1985 2609;2610 2610 2 ALPEVHYHLGQK Unmodified 1390.7357 0.73573382 546 P07902-2;P07902 GALT Galactose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 7 0 1 43.969 43.969 4 0.00031499 11098 TMT1-6 87.184 58.98 92.14 123 99.318 71.87 106.31 128.08 87 123 102 73 109 123 1 1 1 1 1 1 10737 1256 546 1253 1986 2611 2611 1 ALPFWNEEIVPQIK Unmodified 1682.9032 0.90319307 782 P18669;P15259;Q8N0Y7 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 0 5.8 2.48 1 1 2 1 80.312 80.312 2;3 7.3712E-17 25301 TMT1-6 142.91 125.84 905.79 1456.2 1079.9 849.06 1121.4 1206.7 857 1443 1118 855 1149 1162 7 7 7 7 7 7 279280 1257 782 1254 1987;1988;1989;1990;1991 2612;2613;2614;2615;2616;2617;2618 2615 7 ALPGLSK Unmodified 684.41703 0.41702544 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 8 0 1 49.782 49.782 2 0.0079842 13518 TMT1-7 121.29 56.516 1861.5 2326.9 1661.4 1865.9 1819 2558.7 1755 2331 1750 1829 1905 2449 1 1 1 1 1 1 156020 1258 1797 1255 1992 2619 2619 1 ALPGQLKPFETLLSQNQGGK Unmodified 2125.1532 0.15315318 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 1 6 3.56 1 1 1 69.563 69.563 4 1.4806E-39 19073 TMT1-8 147.92 128.53 998.3 1811.8 1461.3 1101.4 1661.4 1441.8 947 1789 1501 1116 1684 1397 5 5 5 5 5 5 228030 1259 583 1256 1993;1994;1995 2620;2621;2622;2623;2624 2624 5 ALPLALVLHELGAGR Unmodified 1528.9089 0.90894715 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 9 0 1 78.078 78.078 3 3.045E-45 22860 TMT1-8 208.35 176.34 103.51 164.17 136.64 124.53 151.75 166.23 98 163 141 124 156 160 3 3 3 3 3 3 76267 1260 800 1258 1996 2625;2626;2627 2626 3 ALPLCLHQIAESYFQEEDYEK Unmodified 2582.1999 0.19990496 2039 Q6PJW8;Q6PJW8-2;Q6PJW8-3 CNST Consortin yes no 0 0 0 0 0 6 0 1 74.567 74.567 4 3.3709E-18 23797 TMT1-5 120.9 94.06 53.894 80.294 71.328 57.672 78.179 83.049 51 80 73 58 80 80 1 1 1 1 1 1 16218 1261 2039 1259 1997 2628 2628 1 ALPLLFNLIK Unmodified 1140.7271 0.72706661 2110 Q86UT6;Q86UT6-2 NLRX1 NLR family member X1 yes no 0 0 0 0 0 9 0 1 88.127 88.127 2 4.7908E-07 26720 TMT1-8 157.54 86.619 46.789 43.084 34.506 36.487 42.779 45.683 44 44 36 36 44 44 1 1 1 1 1 1 4667.9 1262 2110 1260 1998 2629 2629 1 ALPLRPDGFR Unmodified 1140.6404 0.64037687 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 1 8 0 1 47.074 47.074 3 0.0092559 12445 TMT1-7 56.013 25.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1263 2779 1261 1999 2630 2630 1 ALQAAYGASAPSVTSAALR Unmodified 1803.9479 0.94791144 176 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 0 0 7 0 2 55.249 55.249 2;3 3.7729E-20 15586 TMT1-6 119.58 74.218 99.69 115.04 99.437 79.072 129.79 105.03 94 116 102 80 131 102 1 1 1 1 1 1 39943 1264 176 1262 2000;2001 2631;2632 2632 2 ALQALEELR Unmodified 1041.5819 0.58185893 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4.5 0.5 1 1 60.901 60.901 2 0.0040694 18609 TMT1-3 100.25 21.218 237.61 357.11 338 162.82 383.93 329.1 225 356 340 174 385 319 3 3 3 3 3 3 36878 1265 1833 1263 2002;2003 2633;2634;2635 2633 3 ALQAQEIECR Unmodified 1216.587 0.58702067 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 0 3 0 1 40.399 40.399 2 0.011671 11504 TMT1-2 81.865 55.971 23.064 68.11 33.437 29.454 13.288 30.535 22 66 36 29 15 29 1 1 1 1 1 1 5502.3 1266 2198 1264 2004 2636 2636 1 ALQASALK Unmodified 800.4756 0.47560295 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 44.966 44.966 2 2.1223E-12 11397 TMT1-7 185.84 37.455 3486 4688.4 4178.5 3374.5 4286 5398.5 3294 4693 4277 3389 4423 5179 4 4 4 4 4 4 628170 1267 459 1265 2005;2006;2007;2008 2637;2638;2639;2640;2641 2639 5 ALQASLWDR Unmodified 1058.5509 0.55089316 2258 Q8TEB9-2;Q8TEB9 RHBDD1 Rhomboid-related protein 4 yes no 0 0 0 0 0 7 0 1 54.147 54.147 2 0.00029151 15162 TMT1-6 95.311 56.505 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1268 2258 1266 2009 2642 2642 1 ALQATVGNSYK Unmodified 1150.5982 0.59823728 652 P11279;P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 yes no 0 0 0 0 0 7 0 1 45.494 45.494 2 2.7501E-23 11738 TMT1-6 196.88 143.11 160.65 249.69 200.33 127.74 186.16 226.01 152 248 205 131 191 217 1 1 1 1 1 1 30835 1269 652 1267 2010 2643 2643 1 ALQDEWDAVMLHSFTLR Unmodified 2030.9884 0.98839604 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 0 7 0 1 79.4 79.4 3 4.4303E-06 25072 TMT1-6 89.039 78.404 23.295 28.819 27.881 37.04 34.377 45.923 22 29 29 36 36 44 1 1 1 1 1 1 8311.3 1270 2918 1268 2011 2644 2644 1 ALQDLENAASGDATVR Unmodified 1629.7958 0.79582747 2712 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 0 3 0 1 60.301 60.301 3 0.0025473 19267 TMT1-2 60.093 48.831 46.862 66.117 56.646 42.799 101.9 82.372 44 66 58 44 102 80 1 2 2 2 2 2 10657 1271 2712 1269 2012 2645;2646 2645 2 ALQEALVLSDR Unmodified 1213.6667 0.6666512 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 5 0 1 58.351 58.351 2 5.9329E-05 17334 TMT1-4 115.29 54.527 183.9 246.01 262.82 257.48 237.98 249.05 174 247 268 254 247 240 2 2 2 2 2 2 70897 1272 800 1270 2013 2647;2648 2648 2 ALQEGDLASSR Unmodified 1145.5677 0.56766543 2755 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 yes no 0 0 0 0 0 3 0 1 39.182 39.182 2 0.00085185 10985 TMT1-2 70.412 37.016 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1273 2755 1271 2014 2649 2649 1 ALQFLEEVK Unmodified 1075.5914 0.59136099 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 6 0 1 70.046 70.046 2 0.00017402 22005 TMT1-5 147.2 88.219 403.75 560.37 556.73 400.94 396.28 595.25 382 561 564 404 416 569 2 2 2 2 2 2 71001 1274 1068 1272 2015 2650;2651 2650 2 ALQGASQIIAEIR Unmodified 1368.7725 0.77251325 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 6.33 0.471 2 1 65.847 65.847 2;3 3.141E-21 20418 TMT1-5 190.68 133.09 300.41 323.12 272.09 296.67 275.35 387.63 283 327 283 291 289 371 4 4 4 4 4 4 71506 1275 68 1273 2016;2017;2018 2652;2653;2654;2655 2653 4 ALQLEEELFQLR Unmodified 1487.7984 0.79839365 11 A6NC98;A6NC98-5;A6NC98-2;A6NC98-4 CCDC88B Coiled-coil domain-containing protein 88B yes no 0 0 0 0 0 5 0 1 78.559 78.559 3 0.0037865 25198 TMT1-4 66.492 46.163 15.982 22.33 0 16.291 5.5174 30.757 15 22 0 15 7 29 1 1 0 1 1 1 3020.8 1276 11 1274 2019 2656 2656 1 ALQLEEER Unmodified 986.50327 0.50327426 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 2 0 1 42.127 42.127 2 0.00099916 11706 TMT1-1 146.03 40.781 191.66 293.68 180.59 119.41 226.93 237.64 181 291 189 123 230 229 1 1 1 1 1 1 383760 1277 720 1275 2020 2657 2657 1 ALQNAVTTFVNR Unmodified 1332.715 0.71499837 116 O14964-2;O14964 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 0 9 0 1 58.78 58.78 3 0.011893 15249 TMT1-8 52.555 36.331 46.429 80.937 62.964 51.085 48.118 83.907 44 80 65 51 51 80 1 1 1 1 1 1 7175.9 1278 116 1276 2021 2658 2658 1 ALQPLEEGEDEEK Unmodified 1485.6835 0.68348305 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 2 0 1 51.03 51.03 3 1.9116E-08 15296 TMT1-1 122.34 95.586 68.659 86.106 109.62 63.041 78.188 75.587 65 87 109 65 80 73 1 1 1 1 1 1 15650 1279 1796 1277 2022 2659 2659 1 ALQQAYDVLIK Unmodified 1260.7078 0.70778773 1996 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 DENND4C DENN domain-containing protein 4C yes no 0 0 0 0 0 7 0 1 68.035 68.035 2 0.00019767 20653 TMT1-6 108.47 59.674 38.098 66.037 33.155 36.868 26.8 53.601 36 65 36 36 29 51 1 1 1 1 1 1 3521.6 1280 1996 1278 2023 2660 2660 1 ALQQVQEK Unmodified 942.51345 0.51344502 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 38.874 38.874 2 0.0001569 9600 TMT1-4 122.19 67.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1281 1805 1279 2024 2661 2661 1 ALQQYTLEPSEKPFDLK Unmodified 2006.0361 0.03605774 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 1 7 0 1 63.011 63.011 3 1.6123E-05 18677 TMT1-6 86.005 62.443 61.429 94.958 54.793 43.905 48.998 67.892 58 94 58 44 51 65 1 1 1 1 1 1 9654.1 1282 3047 1280 2025 2662 2662 1 ALQSNIIPFCDEVMQLLLENLGNENVHR Unmodified 3265.6224 0.6223669 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 8 0 1 97.537 97.537 4 0.022337 31789 TMT1-7 29.736 23.441 7.511 0 0 0 0 7.462 7 0 0 0 0 7 1 0 0 0 0 1 2285 1283 1803 1281 2026 2663 2663 1 ALQSPALGLR Unmodified 1024.6029 0.60292873 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 50.02 50.02 2 0.00044211 13630 TMT1-7 117.3 38.154 106.98 265.2 189.24 143.25 210.22 205.07 102 259 196 145 214 198 1 1 1 1 1 1 29220 1284 1139 1282 2027 2664 2664 1 ALQSVGQIVGEVLK Unmodified 1439.8348 0.83477916 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 7.5 0.5 1 1 80.419 80.419 2;3 4.4812E-14 25509 TMT1-7 135.58 99.624 99.427 160.72 104.95 63.872 106.9 121.67 94 159 109 66 109 117 2 2 2 2 2 2 20580 1285 1437 1283 2028;2029 2665;2666 2666 2 ALQVLVDQSK Unmodified 1099.6237 0.62372375 2426 Q96JC1;Q96JC1-2 VPS39 Vam6/Vps39-like protein yes no 0 0 0 0 0 7 0 1 58.267 58.267 3 0.011215 16709 TMT1-6 63.073 38.282 77.508 78.702 71.284 58.124 54.317 107.18 73 80 73 58 58 102 1 1 1 1 1 1 2593600 1286 2426 1284 2030 2667 2667 1 ALRPDLADK Unmodified 997.55564 0.55564418 2247 Q8TCD5-2;Q8TCD5 NT5C 5'(3')-deoxyribonucleotidase, cytosolic type yes no 0 0 0 0 1 6 0 1 41.359 41.359 3 0.0037614 10706 TMT1-5 87.789 16.566 263.49 422.62 261 197.25 308.04 330.2 249 418 274 200 314 318 1 1 1 1 1 1 20718 1287 2247 1285 2031 2668 2668 1 ALSAETESHIYR Unmodified 1375.6732 0.67319314 94 O14569 CYB561D2 Cytochrome b561 domain-containing protein 2 yes yes 0 0 0 0 0 3 0 1 37.824 37.824 3 1.4382E-09 10429 TMT1-2 150.09 97.986 61.295 94.584 77.683 64.941 78.394 67.053 58 94 80 65 80 65 1 1 1 1 1 1 13602 1288 94 1286 2032 2669 2669 1 ALSDADVQK Acetyl (N-term) 987.48729 0.48728985 1039 P36543;P36543-2;P36543-3 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 1 0 0 0 0 2 0 1 50.034 50.034 2 0.00021799 14949 TMT1-1 117.02 61.008 60.679 147.91 136.01 92.634 106.42 97.167 58 145 138 94 109 94 1 1 1 1 1 1 25287 1289 1039 1287 2033 2670 2670 1 ALSGVLEQDR Unmodified 1086.5669 0.56693715 3007 Q9Y450;Q9Y450-4;Q9Y450-2 HBS1L HBS1-like protein yes no 0 0 0 0 0 4 0 1 48.076 48.076 2 0.03434 13516 TMT1-3 68.525 25.307 130.7 120.18 112.38 118.13 104.19 128.14 123 123 116 116 109 123 1 1 1 1 1 1 8614.8 1290 3007 1288 2034 2671 2671 1 ALSGYCGFMAANLYAR Unmodified 1763.8123 0.81234593 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 9 0 1 67.339 67.339 3 0.046052 18607 TMT1-8 32.715 10.517 83.96 169.14 172.63 113.84 141.53 143.07 80 167 174 116 145 138 1 1 1 1 1 1 6878.8 1291 1286 1289 2035 2672 2672 1 ALSIGFETCR Unmodified 1152.5597 0.55974328 730 P16070;P16070-15;P16070-5;P16070-7;P16070-3;P16070-6;P16070-4;P16070-17;P16070-9;P16070-8;P16070-16;P16070-10;P16070-11;P16070-13;P16070-14;P16070-12;P16070-18 CD44 CD44 antigen yes no 0 0 0 0 0 6.5 0.5 1 1 54.582 54.582 2 0.0045089 15946 TMT1-5 92.732 58.935 268.25 420.57 364.64 277.53 534.8 412.21 254 418 373 283 537 401 2 2 2 2 2 2 43160 1292 730 1290 2036;2037 2673;2674 2673 2 ALSNVEGFER Unmodified 1120.5513 0.55128709 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 4.67 2.36 1 1 1 1 1 1 48.104 48.104 2 5.2064E-39 13466 TMT1-3 226.39 145.2 5401.7 6403.6 6250.8 4339.2 5935.7 7393.9 5099 6459 6336 4413 6108 7095 8 8 8 8 8 8 1649800 1293 565 1291 2038;2039;2040;2041;2042;2043 2675;2676;2677;2678;2679;2680;2681;2682;2683 2678 9 ALSPLEEWLR Unmodified 1212.6503 0.65027285 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 7 0 1 73.697 73.697 2 0.015344 22850 TMT1-6 78.264 45.654 99.534 138.35 105.97 71.019 130.45 96.482 94 138 109 73 131 94 1 1 1 1 1 1 11255 1294 903 1292 2044 2684 2684 1 ALSQLAEVEEK Unmodified 1215.6347 0.63468237 235;1726 Q13596-2;Q13596;Q13596-3;O60749-2;O60749 SNX1;SNX2 Sorting nexin-1;Sorting nexin-2 no no 0 0 0 0 0 4 0 1 57.406 57.406 3 4.3765E-05 17199 TMT1-3 107.09 65.805 176.37 292.89 226.23 287.95 245.08 214.73 167 290 238 280 254 208 1 1 1 1 1 1 28831 1295 1726;235 1293 2045 2685 2685 1 ALSQYLTDR Unmodified 1065.5455 0.54547343 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 51.495 51.495 2 0.0046305 14687 TMT1-4 99.013 59.689 159.84 371.57 232.6 235.17 299.77 246.22 152 363 246 233 305 239 2 2 2 2 2 2 75034 1296 699 1294 2046;2047 2686;2687 2686 2 ALSSQHQAR Unmodified 996.51009 0.51009098 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 6.14 2.64 1 2 1 1 2 18.127 18.127 3 1.0421E-18 3359 TMT1-4 164.68 130.5 25.415 33.997 27.852 30.49 34.035 34.207 24 34 29 30 35 33 6 6 6 6 6 6 10959 1297 640 1295 2048;2049;2050;2051;2052;2053;2054 2688;2689;2690;2691;2692;2693;2694;2695 2690 8 ALSTDPAAPNLK Unmodified 1196.6401 0.6401021 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4 2.16 1 1 1 49.802 49.802 3 1.3327E-09 13960 TMT1-5 150.46 99.189 3326 3614.4 3832.5 2890 3249.1 4350.4 3138 3668 3877 2909 3376 4168 5 5 5 5 5 5 744610 1298 3010 1296 2055;2056;2057 2696;2697;2698;2699;2700 2699 5 ALSTDSIER Unmodified 990.49819 0.49818889 1829 Q15118;Q15118-2 PDK1 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial yes no 0 0 0 0 0 3 0 1 39.63 39.63 2 0.0010126 11164 TMT1-2 84.615 41.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1299 1829 1297 2058 2701 2701 1 ALSTGEK Unmodified 704.37047 0.37046918 1461 P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 0 0 0 0 0 6.67 1.7 1 1 1 39.147 39.147 2 0.0028444 8016 TMT1-5 140.98 49.998 4571.3 4222 4477.3 3439.3 5592 3620.5 4305 4259 4535 3487 5616 3546 5 4 5 5 5 5 839570 1300 1461 1298 2059;2060;2061 2702;2703;2704;2705;2706 2705 5 ALSVAELTQQMFDAR Unmodified 1678.8349 0.83485551 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 5.5 2.69 1 1 1 1 78.231 78.231 3 2.4783E-35 24619 TMT1-6 202.25 196.21 510.04 746.67 567.68 475.24 537.09 751.13 482 743 588 475 559 719 7 7 7 7 7 7 500090 1301 2650 1299 2062;2063;2064;2065 2707;2708;2709;2710;2711;2712;2713 2710 7 ALSVAELTQQMFDAR Oxidation (M) 1694.8298 0.82977013 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 7 0.707 1 2 1 63.848 63.848 2;3 1.5182E-05 19550 TMT1-5 98.676 92.239 129.92 156.84 213.66 102.72 195.93 157.51 123 159 211 109 197 153 4 4 4 4 4 4 81114 1302 2650 1299 2066;2067;2068;2069 2714;2715;2716;2717 2714 303 4 ALSVETEK Unmodified 875.46001 0.46001246 626 P10155;P10155-3;P10155-5;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 4 0 1 42.778 42.778 2 0.0013136 11391 TMT1-3 143.01 65.952 161.61 164.96 109.61 116.57 195.86 110.6 152 167 116 116 196 109 1 1 1 1 1 1 15243 1303 626 1300 2070 2718 2718 1 ALSVGLVK Unmodified 785.50109 0.50108942 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 9 0 1 54.644 54.644 2 0.0073468 13651 TMT1-8 112.17 54.612 146.01 203.23 174.66 185.26 173.15 223.18 138 203 181 182 181 214 2 2 2 2 2 2 12886 1304 2930 1301 2071 2719;2720 2720 2 ALSVGNIDDALQCYSEAIK Unmodified 2065.999 0.99902031 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 6 0 1 78.755 78.755 3 1.0168E-35 25412 TMT1-5 161.99 145.11 131.5 159.26 126.71 108.07 186.8 172.69 124 160 131 109 189 167 2 2 2 2 2 2 45026 1305 986 1302 2072 2721;2722 2721 2 ALSYLYEK Unmodified 985.51205 0.51204804 2058 Q6YP21;Q6YP21-3;Q6YP21-2 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 0 0 0 0 0 7 0 1 58.299 58.299 2 0.00067092 16803 TMT1-6 114.89 64.288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1306 2058 1303 2073 2723 2723 1 ALTAEIVK Unmodified 843.50657 0.50656873 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 6 0 1 51.411 51.411 2 0.0052491 14694 TMT1-5 119.27 51.517 122.64 200.11 137.38 154.51 182.98 221.84 116 198 145 152 189 213 1 1 1 1 1 1 13474 1307 1042 1304 2074 2724 2724 1 ALTDAGCNLNPLQYIK Unmodified 1789.9033 0.90326943 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 74.109 74.109 2 3.4494E-10 23102 TMT1-7 96.604 89.918 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1308 2273 1305 2075 2725 2725 1 ALTDFFR Unmodified 868.4443 0.44430282 931 P28676 GCA Grancalcin yes yes 0 0 0 0 0 8 0 1 64.583 64.583 2 0.0080481 19387 TMT1-7 120.52 79.669 176.76 270.24 178.9 190.55 285.44 235.97 167 268 189 189 289 229 1 1 1 1 1 1 43476 1309 931 1306 2076 2726 2726 1 ALTDMPQMR Unmodified 1061.4998 0.49978556 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 6 0.816 1 1 1 48.969 48.969 2 8.2594E-05 13605 TMT1-5 151.5 100.89 752.96 943.14 692.17 618.86 584.06 1170.9 710 945 721 614 624 1114 4 4 4 4 4 4 110080 1310 437 1307 2077;2078;2079 2727;2728;2729;2730 2728 4 ALTDSFR Unmodified 808.40792 0.40791731 966 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 0 6 0 1 43.598 43.598 2 0.026335 11571 TMT1-5 92.677 59.705 224.65 224.82 284.3 163.56 223.85 329.4 212 230 283 169 232 315 1 1 1 1 1 1 23279 1311 966 1308 2080 2731 2731 1 ALTEELHQK Unmodified 1067.5611 0.56112349 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 4 0 1 39.376 39.376 3 0.00022156 10073 TMT1-3 83.948 53.384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1312 1999 1309 2081 2732 2732 1 ALTELFFVTENR Unmodified 1438.7456 0.7456298 155 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 76.758 76.758 2 0.00040352 24060 TMT1-6 76.843 48.675 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1313 155 1310 2082 2733 2733 1 ALTEQQEQLR Unmodified 1214.6255 0.62551466 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 3 0 1 37.748 37.748 2 0.0017087 10415 TMT1-2 71.03 23.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1314 2131 1311 2083 2734 2734 1 ALTGGIAHLFK Unmodified 1126.6499 0.64987892 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 59.337 59.337 3 0.00031593 15401 TMT1-8 85.958 51.15 161.44 179.6 125.63 101.45 135.32 127.26 152 181 131 102 138 123 1 1 1 1 1 1 49871 1315 600 1312 2084 2735 2735 1 ALTGHLEEVVLALLK Unmodified 1604.9501 0.95014327 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 8.25 0.433 3 1 88.196 88.196 3;4 1.0314E-27 28513 TMT1-7 180.84 145.16 466.88 985.47 586.45 659.95 768.58 890.56 443 965 626 649 793 856 6 6 6 6 6 6 166750 1316 461 1313 2085;2086;2087;2088 2736;2737;2738;2739;2740;2741;2742 2737 7 ALTLGALTLPLAR Unmodified 1308.8129 0.8129215 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 1 76.483 76.483 2 8.7804E-06 22185 TMT1-8 106.16 74.928 199.15 229.44 238.29 124.37 245.16 217.93 188 232 239 131 247 211 2 2 2 2 2 2 38872 1317 2525 1314 2089 2743;2744 2743 2 ALTLGLAK Unmodified 785.50109 0.50108942 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 9 0 1 57.272 57.272 2 0.0018701 14606 TMT1-8 136.11 46.563 139.1 159.01 110.7 102.5 127.13 150.94 131 160 116 102 131 145 1 1 1 1 1 1 23205 1318 2539 1315 2090 2745 2745 1 ALTNEAENWADNEPNNKR Unmodified 2084.9512 0.95115891 733 P16109 SELP P-selectin yes yes 0 0 0 0 1 4 0 1 46.987 46.987 4 3.3461E-05 13044 TMT1-3 77.505 62.922 153.18 269.76 175.68 120.48 185.61 190.85 145 266 183 123 189 184 1 1 1 1 1 1 73208 1319 733 1316 2091 2746 2746 1 ALTNLPHTDFTLCK Unmodified 1629.8185 0.81847717 2842 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 0 8 0 1 58.963 58.963 3 1.9497E-17 17144 TMT1-7 139.3 121.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1320 2842 1317 2092 2747 2747 1 ALTPQCGSGEDLYILTGTVPSDYR Unmodified 2612.2428 0.24283241 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 5 0 1 72.184 72.184 4 2.6656E-07 22715 TMT1-4 77.053 62.469 77.695 79.221 39.462 67.374 70.147 90.74 73 80 44 65 73 87 1 1 1 1 1 1 25156 1321 333 1318 2093 2748 2748 1 ALTQTGGPHVK Unmodified 1107.6037 0.60365701 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 35.078 35.078 3 8.79E-23 6472 TMT1-8 187.58 130.4 2346.2 2933.2 2451 1946.3 2534.9 3048.9 2214 2944 2519 1958 2609 2928 8 8 8 8 8 8 671360 1322 831 1319 2094;2095;2096;2097;2098 2749;2750;2751;2752;2753;2754;2755;2756 2755 8 ALTSEIALLQSR Unmodified 1300.7351 0.73506511 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 64.171 64.171 2;3 2.6201E-09 19700 TMT1-5 145.95 99.483 138.45 219.79 168.93 122.4 163.11 173.37 131 218 174 124 167 167 2 2 2 2 2 2 50917 1323 478 1320 2099;2100 2757;2758 2757 2 ALTSELANAR Unmodified 1044.5564 0.55637247 894 P26038 MSN Moesin yes yes 0 0 0 0 0 5 0.816 1 1 1 43.916 43.916 2 1.6446E-79 11648 TMT1-4 265.55 165.16 971.98 1717.7 1276.6 1078.2 1448.1 1377.5 921 1696 1324 1081 1477 1331 4 4 4 4 4 4 481000 1324 894 1321 2101;2102;2103 2759;2760;2761;2762 2761 4 ALTSELANARDESK Unmodified 1503.7529 0.75290002 894 P26038 MSN Moesin yes yes 0 0 0 0 1 4 0 1 43.874 43.874 3 8.7585E-17 11880 TMT1-3 146.96 130.74 315.42 499.26 304.5 253.16 219.49 519.27 298 494 321 252 238 493 1 1 1 1 1 1 54959 1325 894 1322 2104 2763 2763 1 ALTSQLTDEELAQGR Unmodified 1630.8162 0.81622856 859 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 0 3 0.816 1 1 1 53.59 53.59 3 5.6513E-18 16563 TMT1-2 153.14 137 138.68 211.79 137.26 139.75 154.19 166.16 131 210 145 138 159 160 3 3 3 3 3 3 58105 1326 859 1323 2105;2106;2107 2764;2765;2766;2767 2765 4 ALTTMGFR Unmodified 895.45857 0.45857268 966 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 0 9 0 1 50.686 50.686 2 0.0068674 12043 TMT1-8 97.093 63.451 263.94 224 174.64 144.34 140.43 316.86 248 230 181 144 151 301 1 1 1 1 1 1 17647 1327 966 1324 2108 2768 2768 1 ALTVAELTQQMFDAK Oxidation (M) 1680.8393 0.83927219 1932 Q3ZCM7;A6NNZ2 TUBB8 Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334 yes no 0 0 1 0 0 7 0 1 74.964 74.964 3 0.043415 23347 TMT1-6 49.482 23.616 233.93 285.7 296.54 194.28 236.93 364.21 221 288 299 198 247 348 1 1 1 1 1 1 36009 1328 1932 1325 2109 2769 2769 272 1 ALTVPELTQQMFDAK Unmodified 1690.86 0.86000763 1493;1713 P68371;P04350;Q13509;Q13509-2 TUBB4B;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 0 0 0 0 0 7.5 0.5 1 1 75.841 75.841 3 4.0797E-15 23708 TMT1-6 136.14 108.27 572.63 1017.9 639.07 588.94 541.67 983.39 542 1003 674 583 576 937 5 5 5 5 5 5 131590 1329 1493;1713 1326 2110;2111 2770;2771;2772;2773;2774 2771 5 ALTVPELTQQVFDAK Unmodified 1658.8879 0.88793694 537 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 0 5 2.35 1 2 1 75.07 75.07 2;3 4.6311E-27 23987 TMT1-5 182.35 147.63 3201.6 4659.5 3298.5 2798 3499.6 4245.2 3024 4634 3437 2800 3608 4076 10 10 10 10 10 10 491180 1330 537 1327 2112;2113;2114;2115 2775;2776;2777;2778;2779;2780;2781;2782;2783;2784 2778 10 ALVADSHPESER Unmodified 1309.6262 0.62624295 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 30.17 30.17 3 0.00024456 7402 TMT1-2 90.731 81.925 68.955 94.485 52.714 90.364 84.261 75.414 65 94 58 87 87 73 1 1 1 1 1 1 7510 1331 1546 1328 2116 2785 2785 1 ALVAIGTHDLDTLSGPFTYTAK Unmodified 2290.1845 0.18451289 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 8 0 2 72.986 72.986 3;4 2.8718E-14 22631 TMT1-7 86.575 69.89 84.892 77.835 93.373 72.658 83.243 128.74 80 80 94 73 87 123 1 1 1 1 1 1 10050 1332 2740 1329 2117;2118 2786;2787 2787 2 ALVATPGK Unmodified 755.45414 0.45413923 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 8 0 1 42.937 42.937 2 0.0094927 10799 TMT1-7 100.45 63.43 122.67 205.58 127.89 190.22 173.77 259.41 116 203 138 184 183 248 1 1 1 1 1 1 18873 1333 786 1330 2119 2788 2788 1 ALVATPGKK Unmodified 883.5491 0.54910224 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 9 0 1 39.292 39.292 3 0.011531 7874 TMT1-8 82.749 43.497 138.76 215.27 119.91 184.5 212.7 412.87 131 213 131 179 225 393 1 1 1 1 1 1 14245 1334 786 1331 2120 2789 2789 1 ALVAYYQK Unmodified 954.51747 0.51746776 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 8 0 1 51.598 51.598 2 0.0009421 14205 TMT1-7 146.58 57.844 161.14 198.18 160.81 161.22 216.84 262.44 152 199 167 160 223 252 1 1 1 1 1 1 26400 1335 1419 1332 2121 2790 2790 1 ALVDELEWEIAQVDPK Unmodified 1853.9411 0.94109472 2964 Q9Y2B0;Q9Y2B0-2 CNPY2 Protein canopy homolog 2 yes no 0 0 0 0 0 4.5 0.5 2 2 90.559 90.559 3;4 0.00013048 30117 TMT1-3 77.562 67.281 94.191 163.07 112.75 80.451 72.431 84.279 89 161 117 81 73 81 4 5 5 5 3 5 14957 1336 2964 1333 2122;2123;2124;2125 2791;2792;2793;2794;2795 2793 5 ALVDGPCTQVR Unmodified 1214.6078 0.60775611 1231 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 0 5 0 1 42.155 42.155 2 1.2991E-08 10873 TMT1-4 162.36 138.59 69.038 94.716 38.567 67.57 62.568 67.505 65 94 44 65 65 65 1 1 1 1 1 1 19661 1337 1231 1334 2126 2796 2796 1 ALVDHHDAEVK Unmodified 1232.6149 0.61494998 2169 Q8N2F6-6;Q8N2F6-4;Q8N2F6-5;Q8N2F6-3;Q8N2F6-2;Q8N2F6 ARMC10 Armadillo repeat-containing protein 10 yes no 0 0 0 0 0 4 0 1 32.499 32.499 4 0.0041868 7342 TMT1-3 67.113 43.508 92.013 131.28 113.69 78.232 129.31 119.97 87 131 116 80 131 116 1 1 1 1 1 1 5772.8 1338 2169 1335 2127 2797 2797 1 ALVDPALHSEEELEAIVESALYK Unmodified 2525.2901 0.29010018 2239 Q8TB24-4;Q8TB24 RIN3 Ras and Rab interactor 3 yes no 0 0 0 0 0 5 0 1 92.794 92.794 4 2.5062E-06 30656 TMT1-4 68.49 60.099 15.845 29.975 52.414 19.971 50.574 53.989 15 30 51 22 51 52 1 2 2 2 2 2 1911.3 1339 2239 1336 2128 2798;2799 2798 2 ALVEEEITR Unmodified 1058.5608 0.56078914 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 2 0 1 47.652 47.652 2 0.0019128 13999 TMT1-1 110.41 89.709 92.638 85.531 47.285 51.587 71.129 83.25 87 87 51 51 73 80 1 1 1 1 1 1 7735.9 1340 119 1337 2129 2800 2800 1 ALVEFTNSPDCLSK Unmodified 1579.7552 0.75520821 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 6 0 1 61.665 61.665 3 8.5404E-07 18748 TMT1-5 90.367 70.528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1341 2876 1338 2130 2801 2801 1 ALVEMQDVVAELLR Unmodified 1584.8545 0.85452832 2595 Q9C0H2-3;Q9C0H2-2;Q9C0H2;Q9C0H2-4 TTYH3 Protein tweety homolog 3 yes no 0 0 0 0 0 6.5 0.5 1 1 94.987 94.987 3 0.00067871 30944 TMT1-6 74.678 45.702 70.369 72.115 48.553 43.715 48.765 44.446 66 73 51 43 50 43 2 3 3 2 3 3 5027.5 1342 2595 1339 2131;2132 2802;2803;2804 2804 3 ALVENCLVPDLWIR Unmodified 1696.8971 0.89706184 1813 Q15020;Q15020-4;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 0 7 0 1 79.317 79.317 3 0.00023365 25039 TMT1-6 63.292 60.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1343 1813 1340 2133 2805 2805 1 ALVEVLGPYEPLLSR Unmodified 1654.9294 0.92940782 2117 Q86VR2 FAM134C Protein FAM134C yes yes 0 0 0 0 0 7 0 1 80.034 80.034 3 7.349E-06 25320 TMT1-6 76.548 49.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1344 2117 1341 2134 2806 2806 1 ALVFVYGTLK Acetyl (Protein N-term) 1151.659 0.65904662 2554 Q9BVM4 GGACT Gamma-glutamylaminecyclotransferase yes yes 0 1 0 0 0 9 0 1 92.005 92.005 2 2.2184E-05 28160 TMT1-8 76.827 46.09 38.324 27.812 27.476 45.805 34.524 29.929 36 29 29 44 36 29 1 1 1 1 1 1 5834.8 1345 2554 1342 2135 2807 2807 1 ALVGGAVGGLAGAASK Unmodified 1297.7354 0.73539946 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 9 0 1 57.153 57.153 3 3.01E-06 14602 TMT1-8 87.083 52.195 107.99 137.4 128.8 93.237 97.196 151.8 102 138 131 94 102 145 1 1 1 1 1 1 6528.3 1346 2447 1343 2136 2808 2808 1 ALVGLCK Unmodified 759.4313 0.43129529 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 9 0 1 50.723 50.723 2 0.027024 12073 TMT1-8 91.093 41.735 160.45 253.45 230.56 172.72 198.01 246.99 152 252 235 174 205 237 1 1 1 1 1 1 11930 1347 2642 1344 2137 2809 2809 1 ALVHERDEAAYGELR Unmodified 1727.8591 0.85909643 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 1 2.5 0.5 1 1 37.79 37.79 4 5.8439E-11 10221 TMT1-1 126.16 99.132 430.04 496.25 340.3 412.08 489.84 536.08 405 499 361 404 504 516 4 4 4 4 4 4 78307 1348 2907 1345 2138;2139 2810;2811;2812;2813 2810 4 ALVILAK Unmodified 726.50036 0.50036114 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 9 0 1 59.633 59.633 2 0.0082772 15616 TMT1-8 140.79 96.674 2560.9 3765.8 2825.6 2473.3 3433.1 3753.5 2420 3746 2934 2476 3514 3613 2 2 2 2 2 2 365080 1349 2468 1346 2140 2814;2815 2815 2 ALVLDCHYPEDEVGQEDEAESDIFSIR Unmodified 3135.3979 0.39788908 1608 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 71.814 71.814 4 1.2253E-53 23968 TMT1-2 155.05 152.8 71.035 99.551 59.52 66.925 88.574 103.01 67 99 62 66 91 99 4 4 3 4 4 4 30602 1350 1608 1347 2141;2142 2816;2817;2818;2819 2818 4 ALVLDQDCTVLADQEVR Unmodified 1943.9622 0.96224087 180 O43566-6;O43566-5 RGS14 Regulator of G-protein signaling 14 yes no 0 0 0 0 0 3 0 1 62.967 62.967 3 0.0039631 20363 TMT1-2 41.323 29.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1351 180 1348 2143 2820 2820 1 ALVLELCCNDESGEDVEVPYVR Unmodified 2565.1727 0.17270393 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4 0 1 74.16 74.16 3 7.2055E-05 23774 TMT1-3 63.225 58.44 23.19 28.527 45.78 0 14.899 23.027 22 29 44 0 15 22 1 1 1 0 1 1 5897.7 1352 845 1349 2144 2821 2821 1 ALVLIAFAQYLQQCPFEDHVK Unmodified 2489.2777 0.27770177 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 9 0 3 90.779 90.779 3;4;5 3.8923E-32 27666 TMT1-8 138.66 112.29 465.97 602.48 523.57 425.66 639.58 695.97 440 604 537 429 653 670 7 7 7 7 7 7 294990 + 1353 28 1350 2145;2146;2147 2822;2823;2824;2825;2826;2827;2828 2822 7 ALVLIGNVEK Unmodified 1054.6386 0.63864553 2910 Q9ULC5-3;Q9ULC5;Q9ULC5-4 ACSL5 Long-chain-fatty-acid--CoA ligase 5 yes no 0 0 0 0 0 8 0 1 62.818 62.818 2 0.00038054 18646 TMT1-7 120.33 90.985 68.791 78.921 93.371 73.072 61.252 98.456 65 80 94 73 65 94 1 1 1 1 1 1 8991.7 1354 2910 1351 2148 2829 2829 1 ALVQNDTLLQVK Unmodified 1340.7664 0.76636524 2295 Q92522 H1FX Histone H1x yes yes 0 0 0 0 0 7 0 1 60.329 60.329 3 0.00016362 17752 TMT1-6 94.191 58.546 84.438 146.72 111.37 110.27 118.4 151.19 80 145 116 109 123 145 1 1 1 1 1 1 33667 1355 2295 1352 2149 2830 2830 1 ALVQSLLAK Unmodified 941.59097 0.59096706 2773 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 0 0 0 0 0 9 0 1 65.341 65.341 2 0.00049037 17835 TMT1-8 118.18 34.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1356 2773 1353 2150 2831 2831 1 ALVSAQWVAEALR Unmodified 1412.7776 0.77759863 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 9 0 1 73.586 73.586 3 4.8866E-08 21086 TMT1-8 105.66 59.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1357 883 1354 2151 2832 2832 1 ALVTGYFMQVAHLER Unmodified 1733.8923 0.89231081 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 9 0 1 68.272 68.272 3 4.5511E-07 18993 TMT1-8 84.842 52.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1358 153 1355 2152 2833 2833 1 ALVVEMSR Unmodified 903.48479 0.48478743 2443 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4;Q96PK6-5 RBM14 RNA-binding protein 14 yes no 0 0 0 0 0 6 0 1 47.569 47.569 2 0.0061175 13186 TMT1-5 72.485 41.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1359 2443 1356 2153 2834 2834 1 ALWCSEDK Unmodified 1007.4382 0.43823117 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 6 0 1 49.483 49.483 2 0.0031265 13946 TMT1-5 133.12 81.428 68.779 71.332 101.85 87.316 90.668 106.14 65 73 102 87 94 102 1 1 1 1 1 1 8372.1 1360 3000 1357 2154 2835 2835 1 ALWEDEGVR Unmodified 1073.5142 0.5141733 1469 P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 0 3.5 0.5 1 1 50.421 50.421 2 0.0024187 15447 TMT1-2 103.87 56.878 131.33 142.61 168.49 67.045 143.68 143.01 124 145 167 73 145 138 2 2 2 2 2 2 19933 1361 1469 1358 2155;2156 2836;2837 2836 2 ALWEVEVVQHDPCR Unmodified 1736.8304 0.83043884 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 5 0 1 55.825 55.825 3 0.047554 16272 TMT1-4 38.948 26.156 138.47 247.91 142 154.66 160.23 213.96 131 244 152 152 167 205 1 1 1 1 1 1 31135 1362 1785 1359 2157 2838 2838 1 ALYDFEAVEDNELTFK Unmodified 1902.8887 0.8887248 308 O75886;O75886-2 STAM2 Signal transducing adapter molecule 2 yes no 0 0 0 0 0 4 0 1 78.27 78.27 3 0.026403 25334 TMT1-3 42.338 24.637 30.804 28.301 28.559 21.669 35.89 22.428 29 29 29 22 36 22 1 1 1 1 1 1 3546.9 1363 308 1360 2158 2839 2839 1 ALYDNCPDCSDELAFSR Unmodified 2031.8302 0.83024042 2707 Q9NQ75;Q9NQ75-2;Q9NQ75-3 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 3 0 1 58.445 58.445 3 7.0707E-19 18545 TMT1-2 133.9 121.8 53.499 125.6 99.333 72.406 77.758 75.599 51 123 102 73 80 73 2 2 2 2 2 2 25604 1364 2707 1361 2159 2840;2841 2840 2 ALYDTFSAFGNILSCK Unmodified 1805.8658 0.86582129 662 P11940-2;P11940;Q13310-2;Q13310;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 yes no 0 0 0 0 0 9 0 1 87.924 87.924 3 1.6465E-11 26668 TMT1-8 111.64 76.756 68.61 109.71 97.805 126.4 117.4 158.68 65 109 102 123 123 152 1 1 1 1 1 1 22299 1365 662 1362 2160 2842 2842 1 ALYDYEGQEHDELSFK Unmodified 1942.8585 0.85848731 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 4 0 1 58.238 58.238 3 1.1312E-28 17498 TMT1-3 180.81 111.22 138.18 222.29 211.53 134.25 211.17 219.97 131 221 214 138 215 212 1 1 1 1 1 1 48579 1366 2926 1363 2161 2843 2843 1 ALYEAGER Unmodified 907.43995 0.43994572 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 2.5 0.5 1 1 36.08 36.08 2 4.2473E-05 9702 TMT1-2 161.6 84.758 709.5 1168.2 771.27 731.15 813.78 1063 671 1155 811 725 845 1019 3 3 3 3 3 3 187960 1367 461 1364 2162;2163 2844;2845;2846 2846 3 ALYEAGERR Unmodified 1063.5411 0.54105675 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 3 0 1 29.329 29.329 3 0.0021922 7076 TMT1-2 59.597 36.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1368 461 1365 2164 2847 2847 1 ALYEGYATVTDAPPECFLTLR Unmodified 2386.1515 0.1514982 2782 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 5 0 1 77.239 77.239 3 0.0027872 24721 TMT1-4 48.896 31.818 23.215 36.153 35.016 37.043 11.62 68.958 22 36 36 36 15 65 1 1 1 1 1 1 5397 1369 2782 1366 2165 2848 2848 1 ALYEHLTAK Unmodified 1044.5604 0.56039521 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 44.62 44.62 3 0.005831 11367 TMT1-6 73.985 43.421 115.36 167.79 126.98 92.376 148.78 173.78 109 167 131 94 152 167 1 1 1 1 1 1 5177.3 1370 1101 1367 2166 2849 2849 1 ALYEQSLHIK Unmodified 1200.6503 0.65027285 1382 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 0 6 0 1 48.584 48.584 3 0.00075091 13573 TMT1-5 94.767 66.754 115.16 194.23 137.03 171.1 173.33 237.04 109 192 145 167 181 227 1 1 1 1 1 1 9342.4 1371 1382 1368 2167 2850 2850 1 ALYESELADAR Unmodified 1236.5986 0.59863121 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2.5 0.5 1 1 49.728 49.728 2;3 0.00010134 15078 TMT1-2 103.08 42.565 315.02 519.72 355.05 353.92 397.35 596.28 298 514 373 350 415 570 3 3 3 3 3 3 26230 1372 1577 1369 2168;2169 2851;2852;2853 2853 3 ALYETELADAR Unmodified 1250.6143 0.61428128 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 2.5 0.5 2 2 51.14 51.14 2;3 1.6115E-16 15684 TMT1-2 182.16 90.094 292.51 392.7 279.17 239.12 290.89 316.83 276 392 291 239 299 305 5 5 5 5 5 5 156150 1373 816 1370 2170;2171;2172;2173 2854;2855;2856;2857;2858 2858 5 ALYETELADARR Unmodified 1406.7154 0.7153923 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 3 0 1 43.836 43.836 3 1.7771E-05 12813 TMT1-2 109.39 76.3 68.941 94.445 55.168 35.324 39.131 153.45 65 94 58 36 44 145 1 1 1 1 1 1 9794.9 1374 816 1371 2174 2859 2859 1 ALYIQANNCVEAK Unmodified 1492.7344 0.73441319 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 6 0 1 51.663 51.663 3 0.0083931 14800 TMT1-5 58.098 36.847 84.684 92.366 116.06 78.264 120.13 143.68 80 94 116 80 123 138 1 1 1 1 1 1 8229.1 1375 1786 1372 2175 2860 2860 1 ALYIVHPTMFIK Unmodified 1431.7948 0.7948286 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 9 0 1 64.602 64.602 3 7.9317E-07 17543 TMT1-8 103.22 77.835 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1376 1616 1373 2176 2861 2861 1 ALYLSDNDFEILPPDIGK Unmodified 2019.0201 0.020073325 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 5.6 0.49 2 3 81.998 81.998 3;4 4.4397E-25 26484 TMT1-4 149.3 130.84 884.64 1267.5 1188.6 972.67 1120 1296.3 837 1266 1213 974 1156 1246 12 12 12 12 12 12 338800 1377 1851 1374 2177;2178;2179;2180;2181 2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873 2863 12 ALYPFEAR Unmodified 965.49707 0.49706667 2801 Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 ITSN2 Intersectin-2 yes no 0 0 0 0 0 6 0 1 53.674 53.674 2 0.0017655 15597 TMT1-5 84.699 43.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1378 2801 1375 2182 2874 2874 1 ALYSLGSK Unmodified 837.45962 0.45961853 1305 P54922 ADPRH [Protein ADP-ribosylarginine] hydrolase yes yes 0 0 0 0 0 8 0 1 50.79 50.79 2 0.0030441 13839 TMT1-7 133.55 55.052 84.463 131.68 119.86 109.89 111.6 136.46 80 131 123 109 116 131 1 1 1 1 1 1 9381.7 1379 1305 1376 2183 2875 2875 1 ALYTFEPR Unmodified 995.50763 0.50763136 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 6 0 1 51.743 51.743 2 0.0065083 14821 TMT1-5 104.37 73.629 339.53 342.54 352.94 272.76 360.49 407.59 320 349 358 275 370 392 1 1 1 1 1 1 43511 1380 2324 1377 2184 2876 2876 1 ALYYLQIHPQELR Unmodified 1642.8831 0.88312633 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 8 0 1 58.933 58.933 3 0.0063825 17134 TMT1-7 61.03 43.221 298.72 414.3 298.71 280.91 273.45 312 282 413 312 278 284 300 1 1 1 1 1 1 24015 1381 1888 1378 2185 2877 2877 1 AMAAEAEASR Oxidation (M) 1021.4499 0.44985848 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 1 0 0 2 0 3 29.988 29.988 2;3 0.0025431 6670 TMT1-1 79.059 51.322 23.3 36.39 20.51 22.302 27.726 46.113 22 36 22 22 29 44 1 1 1 1 1 1 2036.3 1382 906 1379 2186;2187;2188 2878;2879;2880 2880 169 3 AMAAEAEASR Unmodified 1005.4549 0.45494386 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 2.5 0.5 1 1 31.706 31.706 2;3 2.7177E-05 7923 TMT1-2 150.53 83.026 139.45 219.53 180.63 224.3 170.7 242.44 132 218 189 218 181 232 4 4 4 4 4 4 23483 1383 906 1379 2189;2190 2881;2882;2883;2884 2883 4 AMAELAA Unmodified 675.32616 0.32616152 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 4 0 1 52.331 52.331 2 0.02099 15221 TMT1-3 96.839 96.839 302.52 388.88 403.68 265.72 225.13 490.33 286 391 407 269 243 466 1 1 1 1 1 1 108750 + 1384 506 1380 2191 2885 2885 1 AMAVLESLR Unmodified 988.53755 0.53755128 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 7 0 1 62.164 62.164 2 0.015683 18349 TMT1-6 81.119 45.292 84.796 108.87 83.229 88.564 83.281 106.36 80 109 87 87 87 102 1 1 1 1 1 1 8957.3 1385 1146 1381 2192 2886 2886 1 AMDVYQK Unmodified 853.40039 0.4003891 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 6 0 1 43.467 43.467 2 0.032499 11556 TMT1-5 89.55 69.913 153.23 235.35 196.95 175.19 173.25 233.84 145 234 203 174 181 224 1 1 1 1 1 1 14867 1386 986 1382 2193 2887 2887 1 AMEAVAAQGK Unmodified 974.48552 0.48551571 782 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 0 5.5 0.5 1 1 41.422 41.422 2 3.0557E-06 10727 TMT1-5 156.62 90.112 246.03 342.94 196.94 189.91 262 310.19 232 341 210 189 269 298 2 2 2 2 2 2 33280 1387 782 1383 2194;2195 2888;2889 2889 2 AMESIGLPK Unmodified 944.5001 0.50010314 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 7 0 1 54.406 54.406 2 0.030869 15269 TMT1-6 73.665 45.456 160.79 201.53 216.65 141.99 190.74 225.88 152 203 218 145 196 217 1 1 1 1 1 1 8923.1 1388 1723 1384 2196 2890 2890 1 AMEWITAK Unmodified 948.47389 0.47388839 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 8 0 1 60.169 60.169 2 0.0055633 17631 TMT1-7 117.04 64.32 169.14 224.05 236.18 157.96 151.17 260.05 160 225 238 160 160 248 1 1 1 1 1 1 23016 1389 1559 1385 2197 2891 2891 1 AMGIMNSFVNDIFER Unmodified 1742.812 0.81201158 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 0 0 6.75 2.33 1 1 2 3 1 85.524 85.524 2;3 3.9227E-54 25875 TMT1-8 217.2 190.65 838.74 1212.2 672.85 947.65 1015.9 1404.8 791 1203 732 920 1059 1345 14 15 15 14 15 15 793980 1390 239;524;2168;2498 1386 2198;2199;2200;2201;2202;2203;2204;2205 2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907 2907 16 AMGIMNSFVNDIFER 2 Oxidation (M) 1774.8018 0.80184082 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 2 0 0 7 0.816 1 1 1 68.466 68.466 3 1.2769E-06 20801 TMT1-7 103.14 88.451 285.61 332.31 227.48 242.9 311.64 347.15 269 334 240 240 320 334 5 5 5 5 5 5 40583 1391 239;524;2168;2498 1386 2206;2207;2208 2908;2909;2910;2911;2912 2911 26;27 5 AMGIMNSFVNDIFER Oxidation (M) 1758.8069 0.8069262 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 1 0 0 7.83 0.799 1 2 7 2 78.447 78.447 2;3 1.4241E-18 22853 TMT1-7 157.09 139.07 982.2 1255.9 852.08 1002.5 1123.4 1400.6 926 1256 903 983 1164 1344 23 23 23 23 23 23 347750 1392 239;524;2168;2498 1386 2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220 2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936 2921 26;27 24 AMGNLQIDFADPSR Unmodified 1533.7246 0.72457678 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 6 0 1 63.805 63.805 2 6.0121E-14 19617 TMT1-5 133.32 96.34 68.5 140.71 90.041 64.647 54.823 83.716 65 138 94 65 58 80 1 1 1 1 1 1 19698 1393 480 1387 2221 2937 2937 1 AMGPLVLTEVLFNEK Unmodified 1659.8906 0.89057948 1307 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 0 8 0 1 89.581 89.581 3 9.6457E-06 28981 TMT1-7 74.678 48.052 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1394 1307 1388 2222 2938 2938 1 AMGVVVATGVNTEIGK Unmodified 1544.8232 0.82322819 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 7 0 1 61.062 61.062 3 1.6089E-08 17864 TMT1-6 105.46 84.209 261.71 355.79 255.89 256.43 315.98 385.4 247 355 268 254 326 370 3 3 3 3 3 3 12943 1395 748 1389 2223 2939;2940;2941 2939 3 AMKDEEK Unmodified 849.39022 0.39021834 1486;1487;551;552 P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 5 0 1 31.371 31.371 3 0.045048 6580 TMT1-4 63.486 4.5687 906.54 572.21 621.12 510.06 840.74 543.12 851 605 631 515 844 532 1 1 1 1 1 1 65721 + 1396 1486;1487;551;552 1390 2224 2942 2942 1 AMKEYEEEER Unmodified 1312.5605 0.56053115 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 1 3 0 1 34.68 34.68 3 0.0052764 9173 TMT1-2 78.342 56.784 84.698 139.89 73.427 96.811 82.645 113.84 80 138 80 94 87 109 1 1 1 1 1 1 9625.7 1397 1891 1391 2225 2943 2943 1 AMLDELAMETLQEK Unmodified 1620.7739 0.77389474 1943 Q4V328-4;Q4V328;Q4V328-2;Q4V328-3 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 5 0 1 79.763 79.763 3 0.0055117 25675 TMT1-4 42.568 22.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1398 1943 1392 2226 2944 2944 1 AMLENEKK Unmodified 961.49027 0.49026674 894 P26038 MSN Moesin yes yes 0 0 0 0 1 6 0 1 37.69 37.69 3 0.022054 9237 TMT1-5 68.846 29.698 169.99 467.43 249.05 294.3 183.86 618.36 162 454 269 286 209 585 1 1 1 1 1 1 27767 1399 894 1393 2227 2945 2945 1 AMLESIGVPLEK Unmodified 1285.6952 0.69517413 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 7 0 1 68.577 68.577 2 0.00045127 20860 TMT1-6 99.522 57.538 46.787 43.079 34.848 28.814 42.875 53.143 44 44 36 29 44 51 1 1 1 1 1 1 5249.3 1400 1297 1394 2228 2946 2946 1 AMLPPNSFQGK Unmodified 1188.5961 0.59612879 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 8 0 1 53.381 53.381 3 0.0073935 14942 TMT1-7 45.077 21.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1401 1900 1395 2229 2947 2947 1 AMLSANIR Unmodified 874.46947 0.46947171 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 0 1 43.182 43.182 2 0.004963 10901 TMT1-7 121.31 69.883 210.04 265.84 180.54 180.37 240.36 191.42 198 266 190 179 244 186 1 1 1 1 1 1 16808 1402 1540 1396 2230 2948 2948 1 AMLSGPGQFAENETNEVNFR Unmodified 2210.0062 0.00623095 1845 Q15369-2;Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 0 0 5 0 1 62.364 62.364 3 1.0131E-10 18845 TMT1-4 103.04 99.542 68.927 79.298 70.248 81.557 90.163 128.55 65 80 73 80 94 123 1 1 1 1 1 1 12258 1403 1845 1397 2231 2949 2949 1 AMLTAVDWTLTK Unmodified 1348.7061 0.70607317 2693 Q9HD20-2;Q9HD20 ATP13A1 Manganese-transporting ATPase 13A1 yes no 0 0 0 0 0 9 0 1 74.832 74.832 3 0.035003 21569 TMT1-8 43.68 1.2849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1404 2693 1398 2232 2950 2950 1 AMLWLSEK Unmodified 976.50519 0.50518852 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 9 0 1 65.446 65.446 2 0.0068487 17861 TMT1-8 122.74 65.932 107.68 203.47 123.79 116.79 139.27 204.96 102 200 131 116 145 196 1 1 1 1 1 1 13427 1405 765 1399 2233 2951 2951 1 AMNNSWHPECFR Unmodified 1547.6398 0.63980129 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3;P0CW19-2 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 8 1 1 1 43.514 43.514 3 0.00027338 9277 TMT1-8 86.803 57.475 171.26 301.69 356.64 263.71 306.71 340.9 163 300 358 266 316 328 2 2 2 2 2 2 29155 1406 1149 1400 2234;2235 2952;2953 2953 2 AMQDAEVSK Unmodified 977.4488 0.44879585 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 38.872 38.872 2 0.0011392 9887 TMT1-3 123.75 95.236 84.641 132.18 89.434 87.913 98.247 128.31 80 131 94 87 102 123 1 1 1 1 1 1 10941 1407 1058 1401 2236 2954 2954 1 AMSTTSISSPQPGK Unmodified 1390.6762 0.67622961 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 7 0 1 43.352 43.352 3 1.4923E-07 10904 TMT1-6 110.38 92.462 123.66 90.683 59.532 106.27 88.733 137.11 116 94 65 102 94 131 1 1 1 1 1 1 9122.8 1408 2887 1402 2237 2955 2955 1 AMTGVEQWPYR Unmodified 1336.6234 0.62340617 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6 0 1 54.117 54.117 2 9.0204E-09 15743 TMT1-5 163.88 134.96 53.704 111.07 77.089 56.93 99.378 136.81 51 109 80 58 102 131 1 1 1 1 1 1 13457 1409 1178 1403 2238 2956 2956 1 AMTILLEEAK Unmodified 1117.6053 0.60529649 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 6 0 1 67.13 67.13 3 0.00055203 20896 TMT1-5 98.048 58.744 38.021 82.012 32.562 28.674 57.54 52.724 36 80 36 29 58 51 1 1 1 1 1 1 3895 1410 1319 1404 2239 2957 2957 1 AMTSNVASVQCDNSDKFPVYK Unmodified 2360.0777 0.077681334 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 1 7 0 1 54.876 54.876 4 4.4542E-14 15427 TMT1-6 112.56 89.388 256.21 435.81 392.23 343.26 264.81 510.52 243 432 402 340 285 486 2 2 2 2 2 2 63255 1411 535 1405 2240 2958;2959 2958 2 AMTTGAIAAMLSTILYSR Unmodified 1869.9692 0.9692405 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 9 0 2 97.345 97.345 2;3 3.8521E-31 30091 TMT1-8 153.48 130.25 15.974 21.713 36.965 37.848 20.738 15.578 15 22 37 37 22 15 1 2 2 2 2 1 11343 1412 813 1406 2241;2242 2960;2961 2961 2 AMVLDLR Unmodified 816.45276 0.45275902 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 7 0 1 54.394 54.394 2 0.041899 15282 TMT1-6 85.359 28.849 200.09 320.72 183.98 175.99 229.89 319.64 189 317 196 175 238 306 1 1 1 1 1 1 37271 1413 2907 1407 2243 2962 2962 1 AMVSEFLK Acetyl (Protein N-term);Oxidation (M) 981.48412 0.48411873 461 P04083 ANXA1 Annexin A1 yes yes 0 1 1 0 0 4 0 1 67.651 67.651 2 0.0001622 21211 TMT1-3 66.258 33.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1414 461 1408 2244 2963 2963 61 1 AMVSEFLK Acetyl (N-term) 965.4892 0.4892041 461 P04083 ANXA1 Annexin A1 yes yes 1 0 0 0 0 5 0 1 79.268 79.268 2 2.1836E-06 25486 TMT1-4 75.854 36.312 289.43 676.43 376.32 299.76 187.61 623.59 275 660 399 298 213 590 1 1 1 1 1 1 96287 1415 461 1408 2245 2964 2964 1 AMWPDGQQDITEVTK Unmodified 1717.7981 0.79813565 20 B0I1T2;B0I1T2-4 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 5 0 1 62.079 62.079 3 1.4617E-14 18733 TMT1-4 111.74 102.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1416 20 1409 2246 2965 2965 1 ANACNSVIK Unmodified 975.48076 0.48076468 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 6 0 1 36.975 36.975 2 1.7472E-05 8985 TMT1-5 154.56 81.517 91.776 121.99 161.29 90.876 119.81 136.23 87 123 160 94 123 131 1 1 1 1 1 1 9741.2 1417 748 1410 2247 2966 2966 1 ANALASATCER Acetyl (Protein N-term) 1204.5506 0.55063516 1149 P48059 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes yes 0 1 0 0 0 2 0 1 45.722 45.722 2 1.8944E-17 13290 TMT1-1 147.2 118.05 115.51 136.91 127.74 116.96 117.58 166.14 109 138 131 116 123 159 2 2 2 2 2 2 158250 1418 1149 1411 2248 2967;2968 2968 2 ANAQAAALYK Unmodified 1019.54 0.53999412 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 6.5 0.5 1 1 42.909 42.909 3 0.00013419 11251 TMT1-5 109.66 65.461 260.6 443.35 369.31 288.5 343.48 425.13 247 439 379 290 355 408 2 2 2 2 2 2 41966 1419 1066 1412 2249;2250 2969;2970 2969 2 ANDTQEFNLSAYFER Unmodified 1803.8064 0.80639216 1241 P51452;P51452-2 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 0 4.5 0.5 1 1 68.609 68.609 2;3 0.00026096 21577 TMT1-3 77.347 73.515 108.98 69.996 19.62 75.801 91.747 90.124 102 73 22 72 94 87 2 2 1 2 2 2 20924 1420 1241 1413 2251;2252 2971;2972 2971 2 ANDTTFGLAAGVFTR Unmodified 1539.7682 0.76815616 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 7 0 1 66.285 66.285 2 4.9426E-27 19954 TMT1-6 147.39 83.987 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1421 1171 1414 2253 2973 2973 1 ANEEYGLR Unmodified 950.44576 0.44575938 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 2 0 1 35.506 35.506 2 0.006311 9172 TMT1-1 106.93 48.21 99.724 107.58 100.18 72.534 68.297 137.7 94 109 102 73 73 131 1 1 1 1 1 1 12413 1422 2852 1415 2254 2974 2974 1 ANENASFLQK Unmodified 1120.5513 0.55128709 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 6 0 1 46.637 46.637 3 0.010852 12814 TMT1-5 63.408 40.722 115.68 121.19 112.42 117.56 134.58 127.28 109 123 116 116 138 123 1 1 1 1 1 1 8386.5 1423 965 1416 2255 2975 2975 1 ANEVISK Unmodified 759.41267 0.41266834 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5 0 1 39.079 39.079 2 0.0088315 9620 TMT1-4 114.89 23.826 363.85 646.71 517.38 419.54 636.3 525.5 345 639 533 423 644 510 1 1 1 1 1 1 111940 1424 1232 1417 2256 2976 2976 1 ANFENLAK Unmodified 905.46068 0.46068117 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 48.497 48.497 2 0.0062714 13609 TMT1-5 107.47 24.028 762.51 967.21 868.74 823.77 752.84 1343 720 971 894 814 800 1280 1 1 1 1 1 1 153040 1425 1766 1418 2257 2977 2977 1 ANFSLPEK Unmodified 904.46543 0.46543219 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 7 0 1 52.268 52.268 3 0.012007 14393 TMT1-6 71.223 10.25 92.346 100.91 83.341 95.914 98.942 97.381 87 102 87 94 102 94 1 1 1 1 1 1 11997 1426 1915 1419 2258 2978 2978 1 ANHASSVPR Unmodified 937.47298 0.47297719 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4.5 2.5 1 1 1 1 18.045 18.045 3 0.00027605 3310 TMT1-7 119.68 62.503 29.632 38.89 36.367 26.592 39.946 50.028 28 39 37 27 41 48 5 5 5 5 5 5 6735 1427 740 1420 2259;2260;2261;2262 2979;2980;2981;2982;2983 2983 5 ANHEEVLAAGK Unmodified 1137.5778 0.57783619 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 3.33 1.7 1 1 1 34.144 34.144 3 3.033E-06 7896 TMT1-3 122.33 78.008 1139.9 1530.7 1343.3 1099.6 1201.1 1443.2 1077 1532 1377 1100 1244 1386 4 4 4 4 4 4 231010 1428 394 1421 2263;2264;2265 2984;2985;2986;2987 2985 4 ANHFFTVTDPR Unmodified 1303.6309 0.63093439 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 7 0 1 43.995 43.995 3 0.020541 11102 TMT1-6 53.013 34.745 99.915 76.81 94.073 56.636 61.202 121.91 94 80 94 58 65 116 1 1 1 1 1 1 17216 1429 2664 1422 2266 2988 2988 1 ANINIEK Unmodified 800.43922 0.43921744 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 6 0 1 43.6 43.6 2 0.00816 11554 TMT1-5 119.17 30.031 799.31 1123.3 864.07 811.19 913.28 921.61 755 1120 898 805 939 889 2 2 2 2 2 2 116560 1430 1372 1423 2267 2989;2990 2989 2 ANINVENAFFTLAR Unmodified 1578.8154 0.8154407 1366 P61006 RAB8A Ras-related protein Rab-8A yes yes 0 0 0 0 0 8 0 1 73.256 73.256 2 3.9025E-18 22816 TMT1-7 159.77 109.99 153.78 157.02 170.52 169.49 152.8 197.11 145 160 174 167 160 189 2 2 2 2 2 2 62674 1431 1366 1424 2268 2991;2992 2992 2 ANITFEYMFEEVPIVIK Unmodified 2042.0435 0.043451304 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 7 0 1 90.685 90.685 3 0.003228 29317 TMT1-6 53.779 36.498 15.859 21.987 21.06 30.188 13.511 23.066 15 22 22 29 15 22 1 1 1 1 1 1 4745.4 1432 145 1425 2269 2993 2993 1 ANIVMVLEIVSGGELFER Oxidation (M) 1991.0398 0.03976291 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 1 0 0 8 0 1 97.537 97.537 3 0.0030046 31860 TMT1-7 58.672 39.094 7.3101 22.672 14.544 6.4947 15.392 0 7 22 15 7 15 0 1 1 1 1 1 0 1926.8 1433 1870 1426 2270 2994 2994 269 1 ANKLDHVVTIIK Unmodified 1349.8031 0.8030851 2497 Q99873-2;Q99873-3;Q99873;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 1 8 0 1 50.559 50.559 4 0.0079286 13827 TMT1-7 63.091 32.653 130.01 209.99 152.61 162.9 153.11 197.11 123 208 160 160 160 189 1 1 1 1 1 1 6137.2 1434 2497 1427 2271 2995 2995 1 ANLEIMTK Unmodified 918.48445 0.48445308 427 P01903 HLA-DRA HLA class II histocompatibility antigen, DR alpha chain yes yes 0 0 0 0 0 6 0 1 52.104 52.104 2 0.030617 14982 TMT1-5 81.338 42.013 91.746 169.39 126.25 109.26 124.88 207.5 87 167 131 109 131 198 1 1 1 1 1 1 14913 1435 427 1428 2272 2996 2996 1 ANLINNIFELAGLGK Unmodified 1585.8828 0.88279198 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 0 9 0 1 92.093 92.093 3 4.377E-11 28213 TMT1-8 113.72 82.084 38.298 43.929 18.221 61.821 25.909 46.165 36 44 22 58 29 44 1 1 1 1 1 1 8434.5 1436 2882 1429 2273 2997 2997 1 ANLPQSFQVDTSK Unmodified 1433.7151 0.71505795 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.5 2.06 1 3 2 54.534 54.534 2;3;4 9.3355E-12 15340 TMT1-6 148.52 133.64 5632.6 7371.9 6844.6 4715 6329.1 7405.1 5322 7393 6955 4796 6501 7116 9 9 9 9 9 9 1398400 1437 831 1430 2274;2275;2276;2277;2278;2279 2998;2999;3000;3001;3002;3003;3004;3005;3006 3004 9 ANLPVLPPVAVLPLGTGNDLAR Unmodified 2196.263 0.26303798 869 P23743 DGKA Diacylglycerol kinase alpha yes yes 0 0 0 0 0 9 0 1 83.112 83.112 3 7.5214E-10 24843 TMT1-8 75.773 54.528 32.002 21.019 13.797 22.683 28.771 15.169 30 22 15 22 29 15 1 1 1 1 1 1 10632 1438 869 1431 2280 3007 3007 1 ANLQIDQINTDLNLER Unmodified 1868.9592 0.9592044 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.33 0.471 2 1 64.625 64.625 2;3 6.8464E-44 20000 TMT1-3 210.41 152.04 646.5 681.74 591.8 515.69 634.66 749.41 609 691 609 515 654 720 6 6 6 6 6 6 569230 1439 1019 1432 2281;2282;2283 3008;3009;3010;3011;3012;3013 3009 6 ANLSLLR Unmodified 785.47594 0.4759373 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 8 0 1 48.507 48.507 2 0.010137 13043 TMT1-7 109.36 15.796 227.3 543.74 290.15 403.83 447.93 488.24 216 530 316 393 462 470 1 1 1 1 1 1 39981 1440 857 1433 2284 3014 3014 1 ANLVLLSGANEGK Unmodified 1284.7038 0.70376498 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 7 0 1 58.315 58.315 2 0.0010375 16833 TMT1-6 88.163 79.3 38.053 65.912 40.774 60.327 33.856 29.948 36 65 44 58 36 29 1 1 1 1 1 1 5541.6 1441 208 1434 2285 3015 3015 1 ANNLSSLSK Unmodified 932.49271 0.49270958 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 7 0 1 42.973 42.973 2 0.027939 10808 TMT1-6 74.841 26.972 38.133 58.579 33.623 36.411 49.599 60.413 36 58 36 36 51 58 1 1 1 1 1 1 13612 1442 272 1435 2286 3016 3016 1 ANPDLPILIR Unmodified 1120.6604 0.66044361 192 O43678;O43678-2 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes no 0 0 0 0 0 6 0 1 60.986 60.986 2 0.024637 18458 TMT1-5 73.499 44.35 68.445 133 105.73 87.089 90.422 113.61 65 131 109 87 94 109 1 1 1 1 1 1 10249 1443 192 1436 2287 3017 3017 1 ANPDPNCCLGVFGLSLYTTER Unmodified 2383.0937 0.093665749 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 0 7 0 1 75.23 75.23 3 0.0020725 23461 TMT1-6 50.426 47.028 30.696 51.746 26.827 28.996 58.588 21.78 29 51 29 29 58 22 1 1 1 1 1 1 15376 1444 1465 1437 2288 3018 3018 1 ANPFGGASHAK Unmodified 1055.5148 0.514842 1424 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 0 7.5 0.5 1 1 34.957 34.957 3 0.00010543 7579 TMT1-7 102.97 42.537 459.75 616.5 474.23 495 595.9 595.95 434 616 495 489 611 575 2 2 2 2 2 2 55158 1445 1424 1438 2289;2290 3019;3020 3020 2 ANPGAWILR Unmodified 996.5505 0.55049923 2789 Q9NYU2;Q9NYU2-2;Q9NYU1 UGGT1;UGGT2 UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2 yes no 0 0 0 0 0 9 0 1 56.802 56.802 2 0.015737 14423 TMT1-8 84.743 46.372 68.628 93.575 108.48 78.409 136.38 127.23 65 94 109 80 138 123 1 1 1 1 1 1 19527 1446 2789 1439 2291 3021 3021 1 ANPQVGVAFPHIK Unmodified 1376.7565 0.75646926 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 8 0 1 51.897 51.897 3 4.6558E-11 14335 TMT1-7 136.7 102.17 557.77 967.56 654.73 622.8 783.86 891.19 528 955 687 619 806 857 3 3 3 3 3 3 59082 1447 676 1440 2292 3022;3023;3024 3023 3 ANPVPDGHSR Unmodified 1048.505 0.5050056 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 3 0 1 23.356 23.356 3 0.0065195 4771 TMT1-2 68.893 59.005 30.841 20.849 28.659 29.458 28.203 22.647 29 22 29 29 29 22 1 1 1 1 1 1 6757.7 1448 1106 1441 2293 3025 3025 1 ANPWDGK Unmodified 786.36605 0.3660525 176 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 0 0 6 0 1 43.795 43.795 2 0.0079571 11686 TMT1-5 121.62 73.115 484.77 674.2 549.27 381.54 521.16 639.65 458 673 563 388 536 614 1 1 1 1 1 1 45343 1449 176 1442 2294 3026 3026 1 ANQAIQMACQSLGEPGCTQAQVLSAATIVAK Unmodified 3215.5737 0.57370215 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.33 0.471 2 1 76.176 76.176 4;5 2.1654E-13 23666 TMT1-7 79.9 68.268 330.13 449.85 400.06 310.23 369.22 377.49 312 450 409 312 379 364 6 6 6 6 6 6 126690 1450 3010 1443 2295;2296;2297 3027;3028;3029;3030;3031;3032 3030 6 ANQAIQMACQSLGEPGCTQAQVLSAATIVAK Oxidation (M) 3231.5686 0.56861677 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 8 0 1 71.119 71.119 4 4.5506E-07 21903 TMT1-7 65.893 49.227 84.543 93.053 139.13 93.843 90.368 106.15 80 95 138 95 94 102 2 2 2 2 2 2 16908 1451 3010 1443 2298 3033;3034 3033 325 2 ANQQFLVYCEIDGSGNGWTVFQK Unmodified 2660.2329 0.23293642 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 7.33 0.471 2 1 78.031 78.031 3;4 7.2881E-24 24509 TMT1-6 128.41 115.09 308.01 421.26 353.76 297.6 373.72 415.74 291 421 364 298 384 400 5 5 5 5 5 5 72292 1452 439 1444 2299;2300;2301 3035;3036;3037;3038;3039 3037 5 ANQQLEK Unmodified 829.42938 0.42938104 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 4 0 1 32.945 32.945 2 0.024489 7520 TMT1-3 94.114 36.834 92.599 22.822 107.11 31.89 57.136 60.198 87 29 102 36 58 58 1 1 1 1 1 1 5363.5 1453 1723 1445 2302 3040 3040 1 ANSILFCGR Unmodified 1036.5124 0.51239916 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 8 0 1 49.484 49.484 2 0.00059048 13402 TMT1-7 90.696 34.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1454 1222 1446 2303 3041 3041 1 ANSLEPEPWFFK Unmodified 1463.7085 0.70851601 504 P06239-3;P06239;P06239-2 LCK Tyrosine-protein kinase Lck yes no 0 0 0 0 0 7 0 1 72.199 72.199 3 0.029454 22251 TMT1-6 48.625 27.068 69.011 71.976 62.339 74.627 76.886 98.01 65 73 65 73 80 94 1 1 1 1 1 1 10944 1455 504 1447 2304 3042 3042 1 ANSPSLFGTEGKPK Unmodified 1431.7358 0.73579339 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 1 8 0 1 46.077 46.077 3 7.7391E-12 12052 TMT1-7 113.4 89.976 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1456 2369 1448 2305 3043 3043 1 ANTFVAELK Unmodified 991.53385 0.53384611 1075 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 56.362 56.362 2 0.00010147 16695 TMT1-5 150.61 128.12 667.77 1274.1 842.25 772.77 700.73 1223 633 1253 884 765 744 1166 4 4 4 4 4 4 146650 1457 1075 1449 2306;2307 3044;3045;3046;3047 3045 4 ANTLSQLSK Unmodified 960.52401 0.52400971 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7 0 1 45.909 45.909 2 0.0009613 11919 TMT1-6 126.29 78.424 53.735 94.961 85.654 56.374 101.82 66.384 51 94 87 58 102 65 1 1 1 1 1 1 6551.9 1458 1723 1450 2308 3048 3048 1 ANVAVVSGAPLQGQLVAR Unmodified 1748.9897 0.98971667 80 O00560-3;O00560 SDCBP Syntenin-1 yes no 0 0 0 0 0 8 0 1 57.197 57.197 3 0.00083118 16464 TMT1-7 61.167 37.931 53.816 87.633 78.145 64.775 85.731 66.844 51 87 80 65 87 65 1 1 1 1 1 1 7339.6 1459 80 1451 2309 3049 3049 1 ANVDISAPK Unmodified 913.4869 0.48689592 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5.5 0.5 1 1 43.811 43.811 2 0.0018076 11550 TMT1-4 112.71 86.109 153.33 241.03 175.27 144.02 213.4 202.85 145 239 182 145 217 196 2 2 2 2 2 2 20822 1460 1632 1452 2310;2311 3050;3051 3050 2 ANVSSPHR Unmodified 866.43586 0.4358634 2296 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 0 0 0 0 0 8 0 1 19.335 19.335 3 0.0049069 3367 TMT1-7 85.161 33.815 2.1246 1.9522 1.9474 1.9936 4.0598 0.95015 2 2 2 2 4 1 1 1 1 1 1 1 369.66 1461 2296 1453 2312 3052 3052 1 ANWEAQQR Unmodified 1001.4679 0.46789181 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 4 0 1 32.172 32.172 2 0.0088816 7182 TMT1-3 101.25 49.917 92.164 100.4 114.42 103.25 75.277 106.58 87 102 116 102 80 102 1 1 1 1 1 1 22633 1462 1883 1454 2313 3053 3053 1 ANWYFLLAR Unmodified 1152.608 0.60801411 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 72.982 72.982 2 0.03819 20836 TMT1-8 66.351 34.13 130.14 189.85 147.61 107.83 133.41 174.22 123 189 152 109 138 167 1 1 1 1 1 1 24602 1463 653 1455 2314 3054 3054 1 ANYGLVEPIPFEFPPTSVQWTPETLAAFDLTK Unmodified 3577.8021 0.80208863 1988 Q5VW32-2;Q5VW32 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 0 8 0 1 99.774 99.774 4 0.01233 32628 TMT1-7 32.553 22.926 11.696 18.322 2.4547 16.051 10.523 7.1617 11 18 4 15 11 7 1 1 1 1 1 1 1122.1 1464 1988 1456 2315 3055 3055 1 ANYWWLR Unmodified 1007.4977 0.49773538 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 1 61.48 61.48 2 0.013748 16269 TMT1-8 107.22 71.973 99.554 145.96 96.159 111.01 127.26 136.01 94 145 102 109 131 131 1 1 1 1 1 1 15933 1465 981 1457 2316 3056 3056 1 APAAHPEGQLK Unmodified 1117.588 0.58800695 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 5 0 1 32.09 32.09 3 0.0015189 6887 TMT1-4 81.338 34.14 92.445 108.74 60.034 74.204 106.72 113.15 87 109 65 73 109 109 1 1 1 1 1 1 7225 1466 1572 1458 2317 3057 3057 1 APALGGSFAGLEPMGLLWALEPEKPLVR Unmodified 2918.5728 0.57282116 1195 P49753;Q86TX2 ACOT2;ACOT1 Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 1 yes no 0 0 0 0 1 9 0 1 90.821 90.821 4 4.4333E-05 27773 TMT1-8 52.707 40.03 23.382 29.062 13.014 30.407 27.353 46.123 22 29 15 29 29 44 1 1 1 1 1 1 2860.1 1467 1195 1459 2318 3058 3058 1 APAPASAPPGPSEELLR Unmodified 1658.8628 0.86278482 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 4 0 1 51.257 51.257 3 1.5898E-05 14740 TMT1-3 81.428 70.793 184.3 234.19 204.46 174.59 181.07 250.67 174 235 210 174 189 240 2 2 2 2 2 2 46348 1468 3051 1460 2319 3059;3060 3059 2 APASAAASEDAPYPVCTVR Unmodified 1931.9047 0.90472599 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 3 0 2 48.582 48.582 3 1.179E-19 14753 TMT1-2 110.82 107.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1469 1081 1461 2320;2321 3061;3062 3062 2 APASVLPAATPR Unmodified 1149.6506 0.6506072 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 7 0 1 45.845 45.845 2 0.03715 11891 TMT1-6 62.466 40.229 54.053 56.991 64.373 50.848 56.264 60.222 51 58 65 51 58 58 1 1 1 1 1 1 7877 1470 695 1462 2322 3063 3063 1 APDEETLIALLAHAK Unmodified 1590.8617 0.86172219 2998 Q9Y3E5 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes yes 0 0 0 0 0 7 0 1 74.779 74.779 3 1.0555E-05 23319 TMT1-6 93.494 71.936 23.167 36.018 43.332 44.859 34.568 29.928 22 36 44 44 36 29 1 1 1 1 1 1 5180.5 1471 2998 1463 2323 3064 3064 1 APDELHYTYLDTFGRPVIVAYK Unmodified 2567.306 0.30602501 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 1 7 0 1 65.591 65.591 4 0.033707 19712 TMT1-6 35.174 32.292 68.662 133.61 68.723 42.66 71.027 98.177 65 131 73 44 73 94 1 1 1 1 1 1 6982.1 1472 478 1464 2324 3065 3065 1 APDFLPLLNK Unmodified 1126.6386 0.63864553 296 O75695 RP2 Protein XRP2 yes yes 0 0 0 0 0 8 0 1 74.704 74.704 2 0.00025713 23295 TMT1-7 126.41 62.932 61.121 102.74 99.986 87.687 76.798 83.089 58 102 102 87 80 80 1 1 1 1 1 1 21728 1473 296 1465 2325 3066 3066 1 APDFNEEHLR Unmodified 1226.568 0.56799978 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 3 0 1 38.946 38.946 3 0.00010584 10890 TMT1-2 84.658 62.427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1474 2223 1466 2326 3067 3067 1 APDFVFYAPR Unmodified 1181.5869 0.58694431 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 0 7.5 0.5 1 1 63.514 63.514 2 7.5243E-05 18904 TMT1-6 142.04 96.882 1010 1410.5 1105.8 1167.4 1255.2 1605.8 954 1407 1153 1150 1304 1540 3 3 3 3 3 3 372050 1475 894;720;1015 1467 2327;2328 3068;3069;3070 3069 3 APDGYIVK Unmodified 861.45962 0.45961853 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 5.5 0.5 1 1 47.458 47.458 2 0.0014989 13061 TMT1-5 87.616 40.549 99.247 152.66 142.05 116.23 111.05 143.94 94 152 145 116 116 138 1 1 1 1 1 1 14709 1476 2291 1468 2329;2330 3071;3072 3072 2 APDVEGQGLDWSLK Unmodified 1513.7413 0.7412727 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 65.423 65.423 3 0.0003783 20004 TMT1-4 77.431 66.17 123.04 160.2 104.2 78.778 130.35 89.022 116 160 109 80 131 87 1 1 1 1 1 1 24525 1477 1632 1469 2331 3073 3073 1 APDVVIGADTIVTVGGLILEKPVDK Unmodified 2518.4258 0.4258058 363 O95671-3;O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein yes no 0 0 0 0 1 7 0 1 87.92 87.92 4 1.73E-07 28237 TMT1-6 72.532 55.969 30.729 35.646 35.022 36.737 27.868 22.657 29 36 36 36 29 22 1 1 1 1 1 1 1823.6 1478 363 1470 2332 3074 3074 1 APEAWDYGQGFVNEEMIR Unmodified 2110.9418 0.94183978 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 4.5 0.5 1 1 70.254 70.254 3 2.3878E-19 21888 TMT1-4 135.08 119.23 153.92 247.17 250.92 186.45 216.64 295.5 146 246 254 188 225 283 5 5 5 5 5 5 55126 1479 388 1471 2333;2334 3075;3076;3077;3078;3079 3078 5 APEDAGPQPGSYEIR Unmodified 1585.7372 0.73724996 3040 Q9Y5Z4 HEBP2 Heme-binding protein 2 yes yes 0 0 0 0 0 2 0 1 44.809 44.809 3 3.9535E-06 12851 TMT1-1 100.4 79.168 46.54 65.057 57.742 19.657 50.369 60.391 44 65 58 22 51 58 1 1 1 1 1 1 13295 1480 3040 1472 2335 3080 3080 1 APEINLPGPMSLIDNTK Unmodified 1808.9342 0.93423521 994 P32456 GBP2 Interferon-induced guanylate-binding protein 2 yes yes 0 0 0 0 0 7 0 1 76.646 76.646 3 0.014951 24025 TMT1-6 46.159 37.514 23.337 28.938 20.622 29.805 35.26 29.908 22 29 22 29 36 29 1 1 1 1 1 1 2381.5 1481 994 1473 2336 3081 3081 1 APELLFRPDLIGEESEGIHEVLVFAIQK Unmodified 3148.6809 0.68085128 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 1 7 0 1 90.652 90.652 5 3.808E-08 29381 TMT1-6 69.619 55.889 77.433 94.683 70.349 57.593 85.511 82.84 73 95 73 58 87 80 2 2 2 2 2 2 8403.3 1482 1381 1474 2337 3082;3083 3083 2 APEPHVEEDDDDELDSK Unmodified 1938.7967 0.79667491 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 0 1.67 0.471 1 2 44.012 44.012 3 2.7855E-30 10327 TMT 1-phospho 173.58 155.04 754.74 1262 1024.4 893.08 1339.4 1013.9 715 1250 1057 896 1353 987 6 6 6 6 6 6 280010 1483 1269 1475 2338;2339;2340 3084;3085;3086;3087;3088;3089 3084 6 APEVSQYIYQVYDSILK Unmodified 2015.0252 0.025158703 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 7.5 0.5 1 1 89.752 89.752 3 0.00091482 28950 TMT1-6 64.275 45.679 31.965 28.472 13.691 15.041 28.609 30.098 30 29 15 15 29 29 1 1 1 1 1 1 5598.3 1484 1467 1476 2341;2342 3090;3091 3090 2 APFAAHGYGAFLTLSILDR Unmodified 2019.0578 0.057796236 1192 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 0 9 0 1 74.948 74.948 3 2.2023E-16 21583 TMT1-8 121.03 102.93 77.468 78.589 78.179 73.53 85.019 106.31 73 80 80 73 88 102 2 2 2 2 2 2 20178 1485 1192 1477 2343 3092;3093 3092 2 APFAAPSPFAELVLPPQQ Unmodified 1878.988 0.98798534 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 8 0 2 92.062 92.062 2;3 1.1545E-08 29868 TMT1-7 103.14 85.393 30.087 81.124 117.65 63.78 100.93 82.4 29 80 116 66 102 80 2 3 3 2 3 3 64317 1486 800 1478 2344;2345 3094;3095;3096 3095 3 APFDLFENR Unmodified 1107.5349 0.53490874 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 6 0 1 66.227 66.227 2 0.001231 20564 TMT1-5 122.44 87.655 84.82 92.744 92.882 63.616 100.68 89.869 80 94 94 65 102 87 1 1 1 1 1 1 20929 1487 545 1479 2346 3097 3097 1 APFPLYALQVDPSTGLLIAAGGGGAAK Unmodified 2554.3795 0.3795243 2692 Q9HCU5 PREB Prolactin regulatory element-binding protein yes yes 0 0 0 0 0 9 0 1 89.655 89.655 4 7.6697E-09 27328 TMT1-8 64.954 42.519 30.708 59.333 18.428 37.302 50.364 36.939 29 58 22 36 51 36 1 1 1 1 1 1 6344.5 1488 2692 1480 2347 3098 3098 1 APGALLAAAGLADAATEIVER Unmodified 1979.0688 0.068754852 2878 Q9UID3-2;Q9UID3 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes no 0 0 0 0 0 6 0 1 88.13 88.13 3 0.0010843 29138 TMT1-5 52.541 49.254 38.285 35.258 27.755 29.512 28.201 22.647 36 36 29 29 29 22 1 1 1 1 1 1 3213.6 1489 2878 1481 2348 3099 3099 1 APGFAQMLK Unmodified 961.50552 0.50552287 1232 P50990 CCT8 T-complex protein 1 subunit theta yes yes 0 0 0 0 0 9 0 1 58.971 58.971 2 0.010634 15262 TMT1-8 91.9 50.471 154.05 165.34 117.52 109.33 149.06 142.85 145 167 123 109 152 138 1 1 1 1 1 1 16243 1490 1232 1482 2349 3100 3100 1 APGIILLDEATSALDTSNER Unmodified 2085.059 0.058978027 2699 Q9NP58-4;Q9NP58 ABCB6 ATP-binding cassette sub-family B member 6, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 83.321 83.321 3 9.8087E-18 27004 TMT1-4 122.01 112.35 30.73 44.283 27.579 22.156 13.083 15.806 29 44 29 22 14 15 2 2 2 2 2 1 7878.1 1491 2699 1483 2350;2351 3101;3102 3102 2 APGIIPR Unmodified 722.44391 0.44390889 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0 1 41.568 41.568 2 0.026196 10250 TMT1-6 92.785 21.21 200.29 155.07 290.43 195.41 80.206 327.11 189 163 286 196 96 309 1 1 1 1 1 1 78311 1492 888 1484 2352 3103 3103 1 APGQLALFSVSDK Unmodified 1331.7085 0.70851601 981 P31939 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 0 0 8 0 1 65.287 65.287 2 0.0068474 19642 TMT1-7 73.927 44.84 46.326 73.094 87.007 56.293 101.83 66.384 44 73 87 58 102 65 1 1 1 1 1 1 8063 1493 981 1485 2353 3104 3104 1 APGQLECETAIAALNSCLR Unmodified 2072.9983 0.9983088 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 0 2 67.429 67.429 2;3 1.5806E-13 20983 TMT1-5 112.68 97.906 77.141 100.35 114.54 102.4 120.36 135.15 73 101 116 102 124 130 2 2 2 2 2 2 70621 1494 3010 1486 2354;2355 3105;3106 3105 2 APGTVLSQEEVEGELAELAMGFLGSR Unmodified 2689.3269 0.32689639 1187 P49593 PPM1F Protein phosphatase 1F yes yes 0 0 0 0 0 6 0 1 102.6 102.6 3 1.3579E-05 33819 TMT1-5 62.069 53.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1313.4 1495 1187 1487 2356 3107 3107 1 APHLAYLR Unmodified 939.52904 0.5290355 2559 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 0 7 0 1 39.602 39.602 3 0.0051934 9413 TMT1-6 84.097 55.991 68.762 93.947 85.67 55.683 138.48 96.252 65 94 87 58 138 94 1 1 1 1 1 1 9305.2 1496 2559 1488 2357 3108 3108 1 APIHFTIEK Unmodified 1054.5811 0.58113065 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 7.5 0.5 1 1 50.466 50.466 3 0.0032122 13720 TMT1-7 79.906 56.68 469.69 529.19 501.22 467.13 539.43 632.74 443 535 514 464 557 608 3 3 3 3 3 3 51791 1497 740 1489 2358;2359 3109;3110;3111 3110 3 APILIATDVASR Unmodified 1225.703 0.7030367 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 0 7 0 2 59.291 59.291 2;3 2.3449E-13 17245 TMT1-6 171.34 121.63 268.22 431.28 360.68 279.03 467.29 396.01 254 428 370 283 472 384 4 4 4 4 4 4 74633 1498 764;2321 1490 2360;2361 3112;3113;3114;3115 3113 4 APKPTLLWLQQFDTEYSFLK Unmodified 2424.2729 0.27293397 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 1 9 0 1 83.432 83.432 4 0.0026141 24941 TMT1-8 51.348 32.563 30.884 20.968 21.394 22.372 21.2 22.847 29 22 22 22 22 22 1 1 1 1 1 1 4261.3 1499 1999 1491 2362 3116 3116 1 APLDIPVPDPVK Unmodified 1259.7125 0.71253876 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 6 0 1 67.192 67.192 3 0.0074803 20898 TMT1-5 62.14 40.267 146.35 189.06 129.94 163.86 173.97 258.34 138 189 138 160 182 247 2 2 2 2 2 2 22389 1500 1603 1492 2363 3117;3118 3117 2 APLDIPVPDPVKEK Unmodified 1516.8501 0.85009487 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 1 6 0 1 61.354 61.354 4 0.00053662 18662 TMT1-5 76.759 61.605 405.63 664.19 512.86 468.38 494.62 748.08 384 658 532 465 518 715 2 2 2 2 2 2 48755 1501 1603 1493 2364 3119;3120 3120 2 APLDLDKYVEIAR Unmodified 1501.814 0.81404372 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 1 6 0 1 64.237 64.237 3 0.0003688 19732 TMT1-5 87.989 80.206 176.93 255.6 163.11 200.56 209.94 258.38 167 254 174 196 218 248 1 1 1 1 1 1 25379 1502 86 1494 2365 3121 3121 1 APLEVAQEH Unmodified 992.49271 0.49270958 329 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 0 2 0 1 41.842 41.842 2 0.021771 11654 TMT1-1 77.318 42.218 30.458 82.382 40.903 36.115 42.283 60.621 29 80 44 36 44 58 1 1 1 1 1 1 5907.2 1503 329 1495 2366 3122 3122 1 APLHLHENPDLAK Unmodified 1453.7678 0.76776223 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 5 0 1 39.929 39.929 4 0.0013972 9972 TMT1-4 71.241 48.005 139.03 168.51 115.65 148.66 155.63 142.67 131 169 123 145 160 138 1 1 1 1 1 1 21782 1504 1314 1496 2367 3123 3123 1 APLIPMEHCTTR Unmodified 1424.6904 0.69043988 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 8 0 1 41.948 41.948 3 0.014099 10407 TMT1-7 54.343 42.319 122.6 194.6 148.83 75.008 189.38 141.7 116 193 152 80 189 138 1 1 1 1 1 1 10753 1505 590 1497 2368 3124 3124 1 APLKPYPVSPSDK Unmodified 1397.7555 0.7554662 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 8 0 1 46.701 46.701 3 0.00066495 12309 TMT1-7 81.904 51.466 84.617 115.92 107.37 71.528 99 128.29 80 116 109 73 102 123 1 1 1 1 1 1 8967.1 1506 1085 1498 2369 3125 3125 1 APMVNPTLGVHEADLLK Unmodified 1803.9553 0.955305 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 6 0 1 60.722 60.722 3 8.8628E-10 18365 TMT1-5 106.94 89.145 68.726 133.78 57.944 90.092 82.148 137.3 65 131 65 87 87 131 1 1 1 1 1 1 13346 1507 1702 1499 2370 3126 3126 1 APNASNLK Unmodified 813.43447 0.43446642 798 P19838-2;P19838;P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 6 0 1 37.105 37.105 2 0.0068123 9035 TMT1-5 70.816 34.621 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1508 798 1500 2371 3127 3127 1 APNHAVVTR Unmodified 963.52501 0.52501276 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 5.5 0.5 1 1 23.017 23.017 3 0.0027252 3904 TMT1-5 83.358 54.196 17.904 26.955 33.868 27.209 15.046 43.277 17 27 34 27 17 41 2 2 2 2 2 2 2880.9 1509 451 1501 2372;2373 3128;3129 3129 2 APNVVVTR Unmodified 854.4974 0.49740102 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 0 4.67 2.62 1 1 1 36.908 36.908 2 0.0061505 8823 TMT1-5 109.11 90.006 888.66 1251 886.99 843.26 995.14 1327.6 839 1246 928 837 1032 1272 4 4 4 4 4 4 421140 1510 1269 1502 2374;2375;2376 3130;3131;3132;3133 3131 4 APPGPAGLSGGESLLVK Unmodified 1548.8512 0.8511575 2729 Q9NRL3-3;Q9NRL3;Q9NRL3-2 STRN4 Striatin-4 yes no 0 0 0 0 0 7 0 1 61.699 61.699 3 0.00042901 18149 TMT1-6 67.846 35.784 91.92 169.88 96.51 71.792 119.36 174.62 87 167 102 73 123 167 1 1 1 1 1 1 11035 1511 2729 1503 2377 3134 3134 1 APPILPPHLLQVILNK Unmodified 1762.0869 0.086911519 3008 Q9Y478 PRKAB1 5'-AMP-activated protein kinase subunit beta-1 yes yes 0 0 0 0 0 9 0 1 79.767 79.767 3 6.6626E-20 23478 TMT1-8 139.46 117.59 30.762 28.183 35.825 28.751 43.135 45.673 29 29 36 29 44 44 1 1 1 1 1 1 5847.7 1512 3008 1504 2378 3135 3135 1 APPNATLEHFYLTSGK Unmodified 1744.8784 0.87843489 2408 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 55.482 55.482 3 2.6209E-07 15659 TMT1-6 102.58 67.374 183.42 379.61 229.07 179.45 251.47 234.81 174 372 241 181 256 227 2 2 2 2 2 2 33286 1513 2408 1505 2379;2380 3136;3137 3136 2 APPSVFAEVPQAQPVLVFK Unmodified 2023.1142 0.11424848 756 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 0 0 8 0 1 77.693 77.693 3 0.00033711 24470 TMT1-7 61.648 44.769 77.709 55.517 57.124 67.159 83.716 122.33 73 58 59 66 87 117 2 2 2 2 2 2 11489 1514 756 1506 2381 3138;3139 3138 2 APPVDDAEVDELVLQTK Unmodified 1837.9309 0.93092397 2879 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 0 3 0 1 70.454 70.454 3 0.0014023 23287 TMT1-2 61.692 42.859 23.223 43.729 27.315 29.681 20.607 30.326 22 43 29 29 22 29 1 1 1 1 1 1 3744.6 1515 2879 1507 2382 3140 3140 1 APPWVPAMGFTLAPSLGCFVGSR Unmodified 2417.2024 0.20242834 963 P30536 TSPO Translocator protein yes yes 0 0 0 0 0 9 0 2 90.587 90.587 3;4 2.6027E-10 27723 TMT1-8 74.444 58.56 54.963 80.211 71.944 43.833 56.571 91.128 52 80 73 45 59 87 3 3 3 3 3 3 59361 1516 963 1508 2383;2384 3141;3142;3143 3142 3 APQCLGK Unmodified 772.39016 0.39015876 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 7 0 1 38.282 38.282 2 0.016847 8893 TMT1-6 100.07 48.279 346.57 445.4 345.25 330.33 403.88 468.18 327 446 359 328 416 450 1 1 1 1 1 1 43873 1517 1545 1509 2385 3144 3144 1 APQETYADIGGLDNQIQEIK Unmodified 2202.0804 0.080441751 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 4 0 2 67.379 67.379 3;4 5.1117E-10 21069 TMT1-3 97.59 75.155 99.241 191.5 110.07 101.73 111.7 174.83 94 188 117 101 117 167 3 3 3 3 3 3 31204 1518 1415 1510 2386;2387 3145;3146;3147 3145 3 APQLVGQFIAR Unmodified 1198.6822 0.68224168 1946 Q53EL6-2;Q53EL6 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 0 9 0 1 60.231 60.231 2 0.00014095 15783 TMT1-8 105.1 69.746 216.95 176.05 177.77 168.4 187.91 272.86 204 182 182 167 196 261 2 2 2 2 2 2 23430 1519 1946 1511 2388 3148;3149 3148 2 APSDLYQIILK Unmodified 1259.7125 0.71253876 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 8 0 1 73.569 73.569 2 1.6405E-05 22892 TMT1-7 121.9 57.062 123.47 98.798 83.987 80.738 90.201 128.54 116 102 87 80 94 123 1 1 1 1 1 1 15341 1520 536 1512 2389 3150 3150 1 APSHSESALNNDSK Unmodified 1455.659 0.65899964 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 4 0 1 29.67 29.67 3 0.0078247 6278 TMT1-3 54.898 39.705 15.927 5.9875 23.123 5.4262 45.013 22.168 15 7 22 7 44 22 1 1 1 1 1 1 2187.2 1521 2795 1513 2390 3151 3151 1 APSIIFIDELDAIGTK Unmodified 1701.9189 0.91890272 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 0 6 0 1 85.559 85.559 3 1.3591E-06 28116 TMT1-5 79.652 57.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1522 769 1514 2391 3152 3152 1 APSTSDSVR Unmodified 918.44067 0.44067401 854 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 0 3 0 1 26.142 26.142 2 0.031098 5833 TMT1-2 73.573 39.834 46.829 34.561 35.011 36.609 34.69 37.386 44 36 36 36 36 36 1 1 1 1 1 1 5231.9 1523 854 1515 2392 3153 3153 1 APSVANVGSHCDLSLK Unmodified 1653.8145 0.81445442 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7 0.816 1 1 1 47.978 47.978 3 1.1214E-23 13325 TMT1-5 173.03 147.31 300.09 336.26 315.06 310.33 284.44 378.84 283 340 324 306 298 363 2 2 2 2 2 2 51588 1524 831 1516 2393;2394;2395 3154;3155;3156 3154 3 APSVPAAEPEYPK Unmodified 1354.6769 0.67688153 1303 P54819-2;P54819;P54819-3;P54819-5 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 4.33 0.471 2 1 48.246 48.246 2;3 8.9492E-08 13579 TMT1-3 123.01 105.2 423.9 547.34 427.4 356.11 400.28 538.63 400 548 442 356 416 516 4 4 4 4 4 4 114300 1525 1303 1517 2396;2397;2398 3157;3158;3159;3160 3159 4 APTCGLCEVAR Unmodified 1232.5642 0.56417674 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 41.483 41.483 2 0.020644 10639 TMT1-4 71.555 50.93 37.954 58.082 64.066 58.09 78.966 59.575 36 58 65 58 80 58 1 1 1 1 1 1 10719 1526 471 1518 2399 3161 3161 1 APTIVGK Unmodified 684.41703 0.41702544 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 8 0 2 42.851 42.851 2 0.0066206 10716 TMT1-7 79.116 49.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1527 1063 1519 2400;2401 3162;3163 3162 2 APTYFCGQTLTFR Unmodified 1560.7395 0.73949856 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 8 0 1 60.82 60.82 2 9.7859E-08 17876 TMT1-7 122.39 94.528 30.597 51.469 43.788 12.97 43.347 60.591 29 51 44 15 44 58 1 1 1 1 1 1 7462 1528 2135 1520 2402 3164 3164 1 APVAGTCYQAEWDDYVPK Unmodified 2068.92 0.9200417 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 5 0 2 64.851 64.851 3;4 3.2979E-10 19783 TMT1-4 107.51 106.43 307.12 405.65 336.24 323.48 389.89 488.83 290 406 348 321 403 469 3 3 3 3 3 3 108460 1529 954 1521 2403;2404 3165;3166;3167 3166 3 APVDFGYVGIDSILEQMR Unmodified 2008.9928 0.99281272 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 6.67 0.471 1 2 89.288 89.288 2;3 8.5964E-06 28806 TMT1-6 89.507 48.223 34.783 74.624 42.028 20.809 38.945 56.453 33 73 44 22 40 54 2 2 2 2 2 2 31870 1530 2864 1522 2405;2406;2407 3168;3169;3170 3169 3 APVDITGQFEK Unmodified 1203.6136 0.61355299 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 57.906 57.906 3 0.046676 17230 TMT1-5 43.604 20 38.218 51.262 25.4 60.831 55.805 60.236 36 51 29 58 58 58 1 1 1 1 1 1 5532.1 1531 1185 1523 2408 3171 3171 1 APVIIIPQSSVSPNAVIADLGLIR Unmodified 2442.421 0.42099519 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 2 90.533 90.533 3;4 7.2582E-05 27675 TMT1-8 55.469 26.889 30.648 44.056 41.449 75.46 40.694 54.271 29 44 44 72 44 52 2 2 2 2 2 2 11291 1532 2064 1524 2409;2410 3172;3173 3173 2 APVILGSPDDVLEFLK Unmodified 1711.9396 0.93963816 589 P09467 FBP1 Fructose-1,6-bisphosphatase 1 yes yes 0 0 0 0 0 6.67 0.471 1 2 88.906 88.906 2;3 9.5498E-07 29317 TMT1-5 80.507 58.676 54.009 64.425 65.372 42.702 79.417 67.024 51 65 66 44 80 65 2 2 2 2 2 2 16833 1533 589 1525 2411;2412;2413 3174;3175;3176 3174 3 APVKPGIPYK Unmodified 1068.6332 0.63316622 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 1 9 0 1 46.024 46.024 3 0.013043 10248 TMT1-8 58.223 40.898 99.261 168.89 125.93 116.19 164.2 149.88 94 167 131 116 167 145 1 1 1 1 1 1 5409.9 1534 1702 1526 2414 3177 3177 1 APVLFNK Unmodified 787.45922 0.4592246 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 53.433 53.433 2 0.01434 13111 TMT1-8 103.71 66.337 68.668 124.99 75.095 81.263 90.433 121.08 65 123 80 80 94 116 1 1 1 1 1 1 18791 1535 1702 1527 2415 3178 3178 1 APVLVALALIECGMK Unmodified 1583.8779 0.8779063 1660 Q12974;Q12974-3 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 0 0 0 0 0 9 0 1 99.028 99.028 3 1.8335E-07 30659 TMT1-8 99.011 81.575 0 46.221 35.59 37.516 42.732 45.685 0 44 37 37 44 44 0 2 2 2 2 2 2482.2 1536 1660 1528 2416 3179;3180 3179 2 APVPTGEVYFADSFDR Unmodified 1769.8261 0.82606496 920 P27824-2;P27824 CANX Calnexin yes no 0 0 0 0 0 3.33 1.7 1 1 1 66.377 66.377 3 1.4176E-18 20369 TMT1-4 150.81 141.55 290.02 390.82 337.89 308.36 316.71 355.53 274 391 348 306 328 342 6 6 6 6 6 6 186100 1537 920 1529 2417;2418;2419 3181;3182;3183;3184;3185;3186 3186 6 APWELLELR Unmodified 1125.6182 0.61824444 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 7 0 1 74.67 74.67 2 0.024804 23212 TMT1-6 76.1 33.501 53.534 118.15 99.787 72.241 85.094 75.39 51 116 102 73 87 73 1 1 1 1 1 1 23849 1538 1297 1530 2420 3187 3187 1 APWIEQEGPEYWDQETR Unmodified 2132.9439 0.94394827 474 P04439;P04439-2 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 0 0 0 0 0 3.5 0.5 1 1 66.585 66.585 3 1.2247E-10 21780 TMT1-2 115.58 112.39 92.928 178.26 100.34 144.48 78.072 183.26 88 175 109 139 87 174 3 3 3 3 3 3 78996 1539 474 1531 2421;2422 3188;3189;3190 3188 3 APWIEQEGPEYWDR Unmodified 1774.7951 0.79509919 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 0 4.33 0.471 2 1 65.334 65.334 2;3 1.1696E-21 20315 TMT1-3 172.11 159.55 284.78 385.06 321.72 315.34 345.49 361.11 269 385 333 312 356 348 5 5 5 5 5 5 131850 1540 425 1532 2423;2424;2425 3191;3192;3193;3194;3195 3192 5 APWVEQEGPEYWDR Unmodified 1760.7794 0.77944912 629 P10321;P10321-2 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 0 0 0 0 0 4 0 1 62.739 62.739 3 2.2864E-05 19257 TMT1-3 92.063 82.314 84.542 131.9 106.45 70.76 84.649 90.326 80 131 109 72 87 87 2 2 2 2 2 2 28983 1541 629 1533 2426 3196;3197 3196 2 AQAALAVNISAAR Unmodified 1254.7044 0.70443369 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 7.33 0.471 2 1 49.162 49.162 2;3 4.1755E-11 13221 TMT1-7 149.38 108.26 200.8 247.17 125.47 155.32 235.64 240.59 189 247 137 153 240 232 3 3 3 3 3 3 40562 1542 1068 1534 2427;2428;2429 3198;3199;3200 3200 3 AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR Unmodified 3679.8774 0.87741239 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 9 0 2 94.055 94.055 4;5 3.8519E-07 28904 TMT1-8 51.533 40.222 14.617 52.523 45.171 6.61 21.668 46.286 14 51 45 7 22 44 2 3 3 1 2 3 7787.9 1543 901 1535 2430;2431 3201;3202;3203 3201 3 AQADLALEK Unmodified 957.51311 0.51311067 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 4 0 1 47.485 47.485 2 0.0098239 13290 TMT1-3 89.171 71.931 84.669 116.07 98.361 103.54 110.83 167.4 80 116 102 102 116 160 1 1 1 1 1 1 9541.2 1544 1805 1536 2432 3204 3204 1 AQAEAQQPTFDALRDELR Unmodified 2058.013 0.013030887 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 3 0 1 55.073 55.073 3 1.1386E-07 17221 TMT1-2 97.32 84.282 68.884 86.732 71.227 49.572 102.39 58.906 65 87 73 51 102 58 1 1 1 1 1 1 20430 1545 1833 1537 2433 3205 3205 1 AQAELVGTADEATR Unmodified 1430.7001 0.70013617 950 P30049 ATP5D ATP synthase subunit delta, mitochondrial yes yes 0 0 0 0 0 2 0 1 43.876 43.876 3 8.1595E-19 12534 TMT1-1 159.18 106.14 100.69 122.31 106.24 86.374 126.78 182.93 95 123 109 87 131 175 2 2 2 2 2 2 71885 1546 950 1538 2434 3206;3207 3207 2 AQAEQAALR Unmodified 956.50394 0.50394296 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 31.045 31.045 2 0.0019456 7411 TMT1-1 78.516 37.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1547 1833 1539 2435 3208 3208 1 AQALAIETEAELQR Unmodified 1541.8049 0.80493559 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 2.5 0.5 1 1 58.393 58.393 3 4.0644E-14 18331 TMT1-1 120.6 104.18 77.479 86.177 69.761 82.247 55.061 83.709 73 87 73 80 59 80 2 2 2 2 2 2 18271 1548 1796 1540 2436;2437 3209;3210;3211 3209 3 AQALSEEEFQR Acetyl (Protein N-term) 1348.6259 0.62590859 1943 Q4V328-4;Q4V328;Q4V328-2 GRIPAP1 GRIP1-associated protein 1 yes no 0 1 0 0 0 2 0 1 54.591 54.591 2 0.0027485 16746 TMT1-1 53.683 24.21 23.291 28.808 28.554 21.955 20.706 37.785 22 29 29 22 22 36 1 1 1 1 1 1 6584.4 1549 1943 1541 2438 3212 3212 1 AQALVQYLEEPLTQVAAS Unmodified 1930.0048 0.004757612 2970 Q9Y2Q5 LAMTOR2 Ragulator complex protein LAMTOR2 yes yes 0 0 0 0 0 5.5 0.5 1 1 92.755 92.755 2;3 1.7977E-05 30550 TMT1-5 62.165 49.782 0 15.96 0 7.651 0 0 0 15 0 7 0 0 0 1 0 1 0 0 1441.2 1550 2970 1542 2439;2440 3213;3214 3214 2 AQALVTDLGTAELAR Unmodified 1527.8257 0.82567103 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 5 0 1 62.926 62.926 3 0.0051064 19065 TMT1-4 41.871 15.198 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1551 2131 1543 2441 3215 3215 1 AQAQAAAEK Unmodified 886.45084 0.45084476 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 29.424 29.424 2 0.009304 6175 TMT1-3 89.886 38.198 30.88 20.956 22.134 5.7761 29.548 15.147 29 22 22 7 29 15 1 1 1 1 1 1 1606.5 1552 1833 1544 2442 3216 3216 1 AQASSIPVGSR Unmodified 1071.5673 0.5672715 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 6 0 1 34.229 34.229 2 4.2265E-06 7893 TMT1-5 99.283 65.279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1553 2461 1545 2443 3217 3217 1 AQATQLLEGLVQELQK Unmodified 1767.9731 0.97306355 1093 P42229;P42229-2 STAT5A Signal transducer and activator of transcription 5A yes no 0 0 0 0 0 7.5 0.5 1 1 88.616 88.616 3 3.1241E-15 28597 TMT1-7 115.38 88.121 54.14 57.234 49.499 44.349 42.161 53.163 51 58 51 44 44 51 1 1 1 1 1 1 17115 1554 1093 1546 2444;2445 3218;3219 3219 2 AQAVSEDAGGNEGR Unmodified 1359.6015 0.60148476 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 2 0 1 28.85 28.85 2 0.013482 6577 TMT1-1 64.64 52.774 7.3579 30.36 0 7.651 0 15.99 7 29 0 7 0 15 1 1 0 1 0 1 1800.1 1555 1328 1547 2446 3220 3220 1 AQAWCYSK Unmodified 1012.4437 0.44365089 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 7.5 0.5 1 1 45.651 45.651 2 0.020044 11792 TMT1-7 88.948 44.501 325.46 362.57 357.43 389.42 419.75 414.42 307 367 368 383 432 400 2 2 2 2 2 2 45023 1556 1237 1548 2447;2448 3221;3222 3222 2 AQAYQTGK Unmodified 865.42938 0.42938104 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 0 6 0 1 32.034 32.034 2 0.0048727 7015 TMT1-5 121.96 71.932 235.33 166.56 162.01 168.42 236.66 101.98 221 174 167 167 237 102 1 1 1 1 1 1 22704 1557 708 1549 2449 3223 3223 1 AQCPIVER Unmodified 971.48585 0.48585006 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 3.5 0.5 1 1 33.223 33.223 2 0.023855 7568 TMT1-3 86.205 54.253 84.328 170.16 109.99 109.61 157.94 127.68 80 167 116 109 160 124 2 2 2 2 2 2 16812 1558 1136 1550 2450;2451 3224;3225 3225 2 AQDEGLLSDVVPFK Unmodified 1516.7773 0.77732386 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 5 0 1 73.194 73.194 3 0.00012741 23100 TMT1-4 83.692 65.947 37.958 42.982 76.216 0 81.637 59.498 36 44 73 0 80 58 1 1 1 0 1 1 7964 1559 1312 1551 2452 3226 3226 1 AQDGSHPLSLQDLIEK Unmodified 1749.8897 0.88972785 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 5 0 2 62.349 62.349 3;4 8.6108E-07 18837 TMT1-4 98.165 70.516 138.87 150.8 157.18 139.11 125.41 152.06 131 153 160 138 131 146 2 2 2 2 2 2 18044 1560 336 1552 2453;2454 3227;3228 3227 2 AQDIEAGDGTTSVVIIAGSLLDSCTK Unmodified 2620.2902 0.29017653 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 5.33 0.471 2 1 84.434 84.434 3;4 2.8123E-05 27483 TMT1-4 57.156 43.425 78.176 147.66 80.888 89.635 91.901 97.582 74 145 87 88 95 94 3 3 3 3 3 3 20654 1561 1233 1553 2455;2456;2457 3229;3230;3231 3230 3 AQDIQCGLQSR Unmodified 1274.6037 0.60373336 2272 Q8WVJ2 NUDCD2 NudC domain-containing protein 2 yes yes 0 0 0 0 0 4 0 1 38.646 38.646 2 0.00018723 9808 TMT1-3 108.98 96.406 38.407 28.043 13.355 22.428 43.719 37.128 36 29 15 22 44 36 1 1 1 1 1 1 5381.2 1562 2272 1554 2458 3232 3232 1 AQDLFLDGVPLRK Unmodified 1470.8195 0.81946344 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 1 7 0 1 61.769 61.769 3 0.035182 18195 TMT1-6 49.988 27.79 61.195 125.6 68.248 64.952 107.69 97.131 58 123 73 65 109 94 1 1 1 1 1 1 8750.3 1563 1999 1555 2459 3233 3233 1 AQDPDQLR Unmodified 941.45666 0.45665842 2782 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 2 0 1 31.253 31.253 2 0.028654 7513 TMT1-1 82.75 29.399 46.704 50.4 42.745 35.995 42.802 45.683 44 51 44 36 44 44 1 1 1 1 1 1 5831 1564 2782 1556 2460 3234 3234 1 AQDPSEVLTMLTNETGFEISSSDATVK Unmodified 2869.3539 0.353899 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 5 0 1 87.891 87.891 4 1.3964E-06 28815 TMT1-4 65.881 63.119 31.843 35.687 28.11 21.7 35.632 29.897 30 36 29 22 36 29 1 1 1 1 1 1 4358.2 1565 1654 1557 2461 3235 3235 1 AQDTELAAYLENR Unmodified 1492.7158 0.71578623 1722 Q13574-6;Q13574-2;Q13574-4;Q13574-7;Q13574-5;Q13574-3;Q13574 DGKZ Diacylglycerol kinase zeta yes no 0 0 0 0 0 3 0 1 58.72 58.72 3 0.0094215 18742 TMT1-2 56.599 31.807 62.012 18.869 21.374 22.107 35.357 37.367 58 22 22 22 36 36 1 1 1 1 1 1 4821.9 1566 1722 1558 2462 3236 3236 1 AQEACGPLEMDSALSVVQNLEK Unmodified 2388.1301 0.13011083 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.8 1.47 1 2 2 78.709 78.709 3;4 6.8784E-38 25205 TMT1-4 154.08 136.21 1048.7 1764.8 1332.9 1077.9 1226.5 1707.9 993 1746 1379 1080 1276 1635 6 6 6 6 6 6 380930 1567 3010 1559 2463;2464;2465;2466;2467 3237;3238;3239;3240;3241;3242 3242 6 AQEACGPLEMDSALSVVQNLEK Oxidation (M) 2404.125 0.12502546 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 4.75 0.433 1 3 70.763 70.763 3;4 2.9231E-12 22101 TMT1-4 96.903 80.961 153.55 242.72 136.76 131.93 222.84 187.65 145 240 146 132 225 182 4 4 4 4 4 4 40614 1568 3010 1559 2468;2469;2470;2471 3243;3244;3245;3246;3247 3245 326 5 AQEACGPLEMDSALSVVQNLEKDLQEVK Unmodified 3100.5057 0.50566539 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5.5 0.5 1 1 90.991 90.991 4 2.2775E-29 30062 TMT1-4 124.17 112.86 116.26 183.44 141.9 124.95 112.77 183.12 110 182 147 124 118 174 5 5 5 5 4 4 14382 1569 3010 1560 2472;2473 3248;3249;3250;3251;3252 3249 5 AQEAEEAGAALR Unmodified 1214.5891 0.58912916 1815 Q15027 ACAP1 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 40.585 40.585 2 8.9209E-05 11194 TMT1-1 84.352 34.318 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1570 1815 1561 2474 3253 3253 1 AQEALLQLSQVLSLMETVK Unmodified 2100.15 0.15004164 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 9 0 2 102.96 102.96 3;4 3.296E-12 32184 TMT1-8 104.84 87.137 23.263 44.92 19.614 30.93 36.746 15.578 22 44 22 30 37 15 2 2 2 2 2 1 6646.6 1571 231 1562 2475;2476 3254;3255 3255 2 AQEAPGQAEPPAAAEVQGAGNENEPR Unmodified 2587.1899 0.18988563 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 0 2 0 1 42.678 42.678 3 5.1262E-16 12029 TMT1-1 95.287 94.303 0 30.489 21.975 0 0 0 0 29 22 0 0 0 0 1 1 0 0 0 10840 1572 104 1563 2477 3256 3256 1 AQEFIHQFLCNPL Unmodified 1615.7817 0.78169773 988 P32019-3;P32019-2;P32019 INPP5B Type II inositol 1,4,5-trisphosphate 5-phosphatase yes no 0 0 0 0 0 8 0 1 79.88 79.88 3 0.0066578 25307 TMT1-7 60.628 40.97 30.853 28.437 20.272 37.488 34.65 37.387 29 29 22 36 36 36 1 1 1 1 1 1 6008.6 1573 988 1564 2478 3257 3257 1 AQEIEAATLAGR Unmodified 1228.6412 0.64116473 1291 P53814-5;P53814;P53814-6 SMTN Smoothelin yes no 0 0 0 0 0 4 0 1 48.418 48.418 2 0.0012427 13653 TMT1-3 68.463 41.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1574 1291 1565 2479 3258 3258 1 AQEILSQLPIK Unmodified 1238.7234 0.72343779 1030 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 68.366 68.366 3 0.00016066 20871 TMT1-7 101.45 65.904 176.34 261.52 256.82 226.29 230.25 302.57 167 261 262 225 240 290 3 3 3 3 3 3 41195 1575 1030 1566 2480;2481 3259;3260;3261 3261 3 AQEIQDESAVLWLDEIQGGIWQSNK Unmodified 2856.393 0.39300212 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 89.683 89.683 4 0.00049037 29561 TMT1-4 50.055 35.821 7.2752 30.13 14.094 6.5364 14.599 23.035 7 29 15 7 15 22 1 1 1 1 1 1 3114 1576 1139 1567 2482 3262 3262 1 AQELGHSQSALASAQR Unmodified 1652.823 0.82304527 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 33.189 33.189 3 7.6382E-12 7622 TMT1-3 124.78 95.202 38.306 20.207 36.951 13.358 44.392 29.647 36 22 36 15 44 29 1 1 1 1 1 1 6528.4 1577 1805 1568 2483;2484 3263;3264 3263 2 AQELGVLQDYLLALTTDDHLLR Unmodified 2496.3224 0.32240336 155 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 92.801 92.801 4 0.0033611 30117 TMT1-6 41.446 32.514 30.882 20.961 21.785 13.592 21.86 15.366 29 22 22 14 22 15 1 1 1 1 1 1 1860.9 1578 155 1569 2485 3265 3265 1 AQEPESGLSEETQVK Unmodified 1630.7686 0.76860967 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 2 0 1 44.627 44.627 3 6.0597E-05 12878 TMT1-1 85.493 61.559 130.8 127.99 90.191 71.336 105.53 151.56 123 130 94 72 109 145 2 2 2 2 2 2 7802.4 1579 1507 1570 2486 3266;3267 3267 2 AQEPSAAIPK Unmodified 1010.5397 0.53965977 1860 Q15459 SF3A1 Splicing factor 3A subunit 1 yes yes 0 0 0 0 0 5 0 1 40.603 40.603 3 0.045532 10441 TMT1-4 45.077 24.748 107.98 129.82 136.53 100 177.99 196.4 102 131 138 102 181 189 1 1 1 1 1 1 20323 1580 1860 1571 2487 3268 3268 1 AQEQQSLIHTNQAESHTAVGR Unmodified 2304.1207 0.12068386 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 5 1.58 1 1 1 1 31.908 31.908 4 2.4818E-40 8108 TMT1-2 175.46 165.74 224.94 274.18 194.28 198.96 254.47 304.01 212 275 204 197 262 292 6 6 6 6 6 6 81149 1581 1684 1572 2488;2489;2490;2491 3269;3270;3271;3272;3273;3274 3269 6 AQESVGIYEVTHQFVK Unmodified 1833.9261 0.92611336 2768 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 0 0 6 0 2 59.769 59.769 3;4 1.2855E-09 18002 TMT1-5 116.06 88.725 169.17 279.16 185.24 207.15 254.44 263.5 160 276 196 204 261 254 2 2 2 2 2 2 36308 1582 2768 1573 2492;2493 3275;3276 3276 2 AQFAQPEILIGTIPGAGGTQR Unmodified 2124.1328 0.13275209 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 8 0 2 70.211 70.211 2;3 1.5066E-08 21593 TMT1-7 76.82 50.147 329.41 904.76 495.26 256.66 416.61 348.42 314 879 520 269 421 338 1 1 1 1 1 1 27305 1583 952 1574 2494;2495 3277;3278 3278 2 AQFDYDPK Unmodified 982.43961 0.43961137 1534 Q00013-2;Q00013 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 4 0 1 47.362 47.362 2 0.0016712 13235 TMT1-3 85.731 70.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1584 1534 1575 2496 3279 3279 1 AQFEGIVTDLIR Unmodified 1360.7351 0.73506511 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 74.307 74.307 2 3.3019E-13 23766 TMT1-5 167.84 145.8 199.1 253.05 226.08 196.5 226.11 280.3 188 254 232 196 234 269 2 2 2 2 2 2 65678 1585 1058 1576 2497 3280;3281 3281 2 AQFLVEK Unmodified 833.4647 0.46470391 2479 Q99623 PHB2 Prohibitin-2 yes yes 0 0 0 0 0 7 0 1 52.272 52.272 2 0.0074194 14408 TMT1-6 128.1 52.72 562.94 794.86 653.85 534.33 434.74 789.23 532 793 673 532 465 752 1 1 1 1 1 1 85025 1586 2479 1577 2498 3282 3282 1 AQGEKPLAGAK Unmodified 1068.5928 0.59275797 210 O43865-2;O43865;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 0 0 0 0 1 6 0 1 35.314 35.314 3 0.0003457 8331 TMT1-5 100.55 55.787 207.33 242.82 295.47 206.32 297.96 307.03 196 246 296 210 304 296 1 1 1 1 1 1 13347 1587 210 1578 2499 3283 3283 1 AQGEPVAGHESPK Unmodified 1305.6313 0.63132832 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 3 0 1 29.252 29.252 3 0.0067115 7016 TMT1-2 60.55 36.207 37.96 65.653 56.681 43.644 56.852 52.744 36 65 58 44 58 51 1 1 1 1 1 1 4884.6 1588 336 1579 2500 3284 3284 1 AQGNPGASLDGR Unmodified 1141.5476 0.54759869 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 3 0 1 32.261 32.261 2 0.0001633 8213 TMT1-2 103.43 75.42 61.621 72.826 41.321 36.08 42.798 45.683 58 73 44 36 44 44 1 1 1 1 1 1 6771.7 1589 377 1580 2501 3285 3285 1 AQGVVLK Unmodified 713.44357 0.44357454 2505 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 0 0 0 0 0 7 0 1 42.524 42.524 2 0.0011016 10570 TMT1-6 110.61 33.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1590 2505 1581 2502 3286 3286 1 AQGWQGLK Unmodified 886.4661 0.4661009 1626 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 0 8 0 1 47.461 47.461 2 0.019774 12623 TMT1-7 89.142 46.142 77.278 109.36 83.941 72.773 107.04 105.68 73 109 87 73 109 102 1 1 1 1 1 1 8382.5 1591 1626 1582 2503 3287 3287 1 AQGYSGLSVK Unmodified 1008.524 0.52400971 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6.17 2.48 1 1 3 1 45.161 45.161 2;3 1.1696E-28 11586 TMT1-6 207.88 128.43 2624.9 3849.4 3166.3 2647.1 3284.5 4073.3 2482 3834 3261 2651 3390 3909 8 8 8 8 8 8 2634500 + 1592 32;554 1583 2504;2505;2506;2507;2508;2509 3288;3289;3290;3291;3292;3293;3294;3295 3292 8 AQHIVPCTISQLLSATLVDEVFR Unmodified 2596.3683 0.36830769 728 P15927;P15927-2;P15927-3 RPA2 Replication protein A 32 kDa subunit yes no 0 0 0 0 0 9 0 1 88.379 88.379 3 0.00010075 26802 TMT1-8 55.718 41.846 7.3612 22.814 5.8478 7.1908 5.9358 30.745 7 22 7 7 7 29 1 1 1 1 1 1 7078.3 1593 728 1584 2510 3296 3296 1 AQHLQSSR Unmodified 925.47298 0.47297719 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 4.67 2.87 1 1 1 16.964 16.964 3 0.0011782 3213 TMT1-4 110.12 75.312 29.797 15.606 28.294 20.548 38.219 17.031 28 17 28 21 38 17 4 4 4 4 4 4 2555.2 1594 415 1585 2511;2512;2513 3297;3298;3299;3300 3298 4 AQHVFQHAVPQEGKPITNQK Unmodified 2256.1763 0.17634824 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 1 8 0 1 38.159 38.159 5 2.5339E-07 8961 TMT1-7 88.264 72.672 84.879 109.1 69.121 64.91 107.15 113.14 80 109 73 65 109 109 1 1 1 1 1 1 17205 1595 1739 1586 2514 3301 3301 1 AQIGTVLPSLIDR Unmodified 1381.7929 0.79291434 2093 Q7Z460-2;Q7Z460-4;Q7Z460-5;Q7Z460-3;Q7Z460 CLASP1 CLIP-associating protein 1 yes no 0 0 0 0 0 7 0 1 66.998 66.998 2 0.0091809 20235 TMT1-6 53.869 15.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1596 2093 1587 2515 3302 3302 1 AQIHDLVLVGGSTR Unmodified 1464.8049 0.80487601 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 7 0 2 48.628 48.628 2;3 3.9313E-05 12986 TMT1-6 100.38 51.009 245.96 358.93 195.34 228.69 297.15 300.66 232 356 211 225 304 290 3 3 3 3 3 3 177350 1597 618 1588 2516;2517 3303;3304;3305 3305 3 AQIIELLCIVEALK Unmodified 1611.927 0.92696498 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 9 0 1 103.86 103.86 3 0.00035115 32392 TMT1-8 68.972 46.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1598 3029 1589 2518 3306 3306 1 AQIIELLCIVEALKK Unmodified 1740.0219 0.021928001 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 1 9 0 2 93.501 93.501 3;4 0.00075381 28768 TMT1-8 68.944 55.265 61.454 79.918 63.305 43.112 64.19 83.448 58 80 65 44 66 80 2 2 2 2 2 2 6082.8 1599 3029 1590 2519;2520 3307;3308 3307 2 AQILPIR Acetyl (Protein N-term) 851.52289 0.52288749 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 1 0 0 0 4.5 0.5 1 1 62.37 62.37 2 0.0011369 19145 TMT1-3 94.669 25.279 7.3538 30.943 28.802 15.318 14.451 23.04 7 30 29 15 15 22 1 2 2 1 1 2 19180 1600 1540 1591 2521;2522 3309;3310 3309 2 AQIWDTAGQER Unmodified 1273.6051 0.60511357 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 5 0 1 46.103 46.103 2 1.287E-16 12436 TMT1-4 184.24 144.62 334.43 433.4 412.18 229.9 475.54 404.3 316 435 416 241 478 392 2 2 2 2 2 2 101920 1601 1880 1592 2523 3311;3312 3311 2 AQKPWAK Unmodified 827.46537 0.46537261 2926 Q9UNF0;Q9UNF0-2;Q9BY11 PACSIN2;PACSIN1 Protein kinase C and casein kinase substrate in neurons protein 2;Protein kinase C and casein kinase substrate in neurons protein 1 yes no 0 0 0 0 1 9 0 1 39.189 39.189 3 0.016027 7871 TMT1-8 70.912 38.442 82.038 419.59 283.46 276.33 274.59 254.4 80 404 297 273 283 246 1 1 1 1 1 1 13484 1602 2926 1593 2524 3313 3313 1 AQLAAITLIIGTFER Unmodified 1615.9297 0.92974218 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 2 94.232 94.232 2;3 0.00011024 29066 TMT1-8 70.197 50.435 31.842 36.764 27.306 38.282 28.28 53.559 30 37 29 37 29 51 2 2 2 2 1 2 5790.6 1603 2444 1594 2525;2526 3314;3315 3315 2 AQLDPAFIK Unmodified 1001.5546 0.55458155 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 6.5 0.5 1 1 57.391 57.391 2 0.00026267 17012 TMT1-5 143.03 69.103 183.85 262.08 256.39 210.16 217.42 241.11 174 262 261 210 225 232 2 2 2 2 2 2 27103 1604 883 1595 2527;2528 3316;3317 3316 2 AQLEEQLK Unmodified 957.51311 0.51311067 1098 P42566;P42566-2 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 0 0 0 0 4 0 1 45.742 45.742 2 0.0010109 12584 TMT1-3 145.92 40.134 115.15 143.47 182.29 97.961 141.45 166.52 109 145 181 102 145 160 1 1 1 1 1 1 13612 1605 1098 1596 2529 3318 3318 1 AQLELEVSK Unmodified 1015.555 0.55497548 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 5 0 1 52.975 52.975 2 0.002003 15134 TMT1-4 108.43 66.555 192.92 215.36 214.56 166.63 165.73 251.11 182 218 218 167 174 240 2 2 2 2 2 2 17687 1606 1796 1597 2530 3319;3320 3319 2 AQLELYPEPLLVANAIK Unmodified 1881.0612 0.061150279 2578 Q9BYI3-3;Q9BYI3 FAM126A Hyccin yes no 0 0 0 0 0 7 0 1 80.2 80.2 3 0.001664 25386 TMT1-6 44.391 18.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1607 2578 1598 2531 3321 3321 1 AQLEQSVEENKER Unmodified 1558.7587 0.75871368 2453 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 0 1 3 0 1 39.613 39.613 3 1.3572E-10 11141 TMT1-2 131.03 106.06 68.801 86.502 85.333 73.266 76.399 114.01 65 87 87 73 80 109 1 1 1 1 1 1 11780 1608 2453 1599 2532 3322 3322 1 AQLEVQASQHR Unmodified 1265.6476 0.64764709 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 4 0 1 29.944 29.944 3 0.01075 6399 TMT1-3 61.194 35.535 46.736 34.301 50.923 44.126 49.5 52.953 44 36 51 44 51 51 1 1 1 1 1 1 8305.1 1609 2851 1600 2533 3323 3323 1 AQLGGPEAAK Unmodified 940.49779 0.49779495 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 5 0 1 38.334 38.334 2 0.00013665 9368 TMT1-4 135.55 75.398 225.49 219.6 147.33 257.56 134.99 354.32 212 223 160 246 152 336 1 1 1 1 1 1 20255 1610 476 1601 2534 3324 3324 1 AQLGPDESK Unmodified 943.46108 0.4610751 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 37.732 37.732 2 0.0020648 9445 TMT1-3 107.08 46.396 77.07 132.53 99.232 62.665 131.09 89.001 73 131 102 65 131 87 1 1 1 1 1 1 10374 1611 664 1602 2535 3325 3325 1 AQLGVQAFADALLIIPK Unmodified 1767.0295 0.02945622 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 9 0 1 91.448 91.448 3 3.364E-14 27963 TMT1-8 115.31 96.581 238.1 319.61 287.93 292.84 254.09 372.25 225 320 297 288 268 356 5 5 5 5 5 5 52533 1612 1068 1603 2536 3326;3327;3328;3329;3330 3327 5 AQLLEELRR Unmodified 1126.6459 0.64585618 2177 Q8N490-4;Q8N490-3;Q8N490 PNKD Probable hydrolase PNKD yes no 0 0 0 0 1 6 0 1 48.649 48.649 3 0.0087573 13616 TMT1-5 74.841 28.135 108.52 83.831 84.95 80.971 74.725 152.44 102 87 87 80 80 145 1 1 1 1 1 1 12149 1613 2177 1604 2537 3331 3331 1 AQLLELPYAR Unmodified 1172.6554 0.65535823 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 7 0 1 62.336 62.336 2 0.00013584 18358 TMT1-6 135.63 82.464 191.99 261.14 152.65 183.32 287.92 203.92 181 260 164 181 290 199 1 1 1 1 1 1 50525 1614 1222 1605 2538 3332 3332 1 AQLLGLIQR Unmodified 1010.6237 0.62366417 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 9 0 1 61.876 61.876 2 6.0816E-10 16500 TMT1-8 178.87 107.73 175.85 369.16 248.29 248.54 294.36 386.02 167 362 261 246 305 370 2 2 2 2 2 2 64508 1615 2753 1606 2539 3333;3334 3334 2 AQLQPNPPAQLANYEFDVLISAAGGK Unmodified 2711.3919 0.39187991 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 7 0 1 88.488 88.488 4 0.0011315 28551 TMT1-6 42.106 34.746 39.313 36.139 34.611 68.605 78.189 68.125 37 37 37 66 80 66 2 2 2 2 2 2 4617.5 1616 2256 1607 2540 3335;3336 3336 2 AQLQQIQASLLGSMEQALR Unmodified 2084.1048 0.10482278 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 9 0 1 86.402 86.402 3 2.0829E-21 26039 TMT1-8 131.37 113.91 15.724 29.167 37.592 13.764 20.789 46.311 15 29 37 15 22 44 1 1 1 1 1 1 10029 1617 1275 1608 2541 3337 3337 1 AQLVDMK Unmodified 803.42112 0.42112454 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.5 0.5 1 1 47.911 47.911 2 0.0074194 13193 TMT1-5 128.1 68.894 1212.3 1904.4 1483.2 1309.8 1557.9 2926.5 1147 1890 1536 1306 1643 2787 3 3 3 3 3 3 383600 1618 437 1609 2542;2543 3338;3339;3340 3339 3 AQLVLAACESLLTSR Unmodified 1630.8712 0.87124102 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 9 0 1 71.784 71.784 3 9.7278E-09 20335 TMT1-8 109.48 88.177 84.647 139.75 82.075 72.889 106.78 113.15 80 138 87 73 109 109 1 1 1 1 1 1 19993 1619 1916 1610 2544 3341 3341 1 AQLYIDCEK Unmodified 1138.5329 0.53285983 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 4 2.16 1 1 1 49.826 49.826 2;3 6.6984E-05 12140 TMT 1-phospho 99.653 73.714 1308.5 1684.2 1731.2 1396.9 1891 1883 1237 1693 1757 1405 1931 1817 3 3 3 3 3 3 469500 + 1620 32;554 1611 2545;2546;2547 3342;3343;3344;3345 3342 4 AQMDLSGR Unmodified 876.41235 0.41235077 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 4.5 0.5 1 1 36.283 36.283 2 0.0023605 8914 TMT1-3 137.13 64.341 516.37 636.74 498.8 444.21 545.78 600.57 487 639 517 443 561 578 4 4 4 4 4 4 146310 1621 393 1612 2548;2549 3346;3347;3348;3349 3347 4 AQMVQEDLEK Oxidation (M) 1205.5598 0.55980286 894 P26038 MSN Moesin yes yes 0 0 1 0 0 2 0 1 44.728 44.728 3 0.0026129 12795 TMT1-1 91.549 59.22 100.03 84.681 68.344 113.53 81.62 121.33 94 87 73 109 87 116 1 1 1 1 1 1 7852.3 1622 894 1613 2550 3350 3350 167 1 AQMVQEDLEK Unmodified 1189.5649 0.56488824 894 P26038 MSN Moesin yes yes 0 0 0 0 0 3 0.816 1 1 1 49.503 49.503 2;3 1.2731E-20 13917 TMT1-3 197.79 172.94 553.84 811.1 546.87 534.78 633.35 1036.2 523 806 575 530 663 989 3 3 3 3 3 3 159550 1623 894 1613 2551;2552;2553 3351;3352;3353 3353 3 AQNAESSLQQK Unmodified 1202.5891 0.58912916 2456 Q96T51;Q96T51-2 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 35.856 35.856 3 0.0022042 8707 TMT1-3 77.593 63.336 92.251 100.64 99.617 95.264 81.91 137.31 87 102 102 94 87 131 1 1 1 1 1 1 9623.3 1624 2456 1614 2554 3354 3354 1 AQNDLIWNIKDELK Unmodified 1698.8941 0.89408495 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 7 0 1 69.12 69.12 3 0.0070045 21070 TMT1-6 52.522 42.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1625 606 1615 2555 3355 3355 1 AQPAQPADEPAEK Unmodified 1350.6416 0.64155866 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 2 0 1 35.096 35.096 3 4.9877E-06 9019 TMT1-1 109.44 87.21 61.52 95.211 39.273 51.897 80.057 36.092 58 94 44 51 80 36 1 1 1 1 1 1 7359.2 1626 890 1616 2556 3356 3356 1 AQPDTLR Unmodified 799.41882 0.41881635 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 3 0 1 28.765 28.765 2 9.5218E-05 6852 TMT1-2 121.31 56.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1627 1522 1617 2557 3357 3357 1 AQPPEAGPQGLHDLGR Unmodified 1641.8223 0.82231699 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 4 0 1 40.52 40.52 3 4.1486E-15 10527 TMT1-3 113.8 97.037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1628 3 1618 2558 3358 3358 1 AQPVQSKPQK Unmodified 1109.6193 0.61930707 2718 Q9NR12;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 1 8 0 1 31.545 31.545 3 0.00010772 6368 TMT1-7 123.8 64.259 720.37 224.54 465.55 362.52 577.53 211.64 675 264 461 367 575 214 1 1 1 1 1 1 32382 1629 2718 1619 2559 3359 3359 1 AQPVQVAEGSEPDGFWEALGGK Unmodified 2271.0808 0.080776102 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 4 2.16 2 2 2 73.791 73.791 3;4 4.2975E-23 23489 TMT1-5 125.09 109 1528.5 1593.5 1621 1223.7 1452.2 1888 1441 1620 1644 1233 1502 1810 9 9 9 9 8 9 998730 + 1630 506 1620 2560;2561;2562;2563;2564;2565 3360;3361;3362;3363;3364;3365;3366;3367;3368 3368 9 AQQALSELHTVEK Unmodified 1452.7573 0.75725712 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 5 0 1 48.562 48.562 3 0.0014568 13442 TMT1-4 73.156 42.329 145.35 412.02 289.55 288.36 254.94 383.95 139 401 303 284 269 367 1 1 1 1 1 1 10526 1631 1977 1622 2566 3369 3369 1 AQQDQLVLIFAGK Unmodified 1429.7929 0.79291434 2731 Q9NRR5-2;Q9NRR5 UBQLN4 Ubiquilin-4 yes no 0 0 0 0 0 8 0 1 72.893 72.893 3 0.00033592 22669 TMT1-7 83.204 58.35 23.122 44.529 43.546 28.595 26.923 61.06 22 44 44 29 29 58 1 1 1 1 1 1 4212.5 1632 2731 1623 2567 3370 3370 1 AQQEDALAQQAFEEAR Unmodified 1803.8388 0.83875492 1741 Q13951;Q13951-2 CBFB Core-binding factor subunit beta yes no 0 0 0 0 0 2 0 1 55.404 55.404 3 4.3061E-18 17039 TMT1-1 142.4 116.81 46.704 42.848 48.991 75.97 47.78 60.465 44 44 51 73 51 58 1 1 1 1 1 1 28239 1633 1741 1624 2568 3371 3371 1 AQQEFAAGVFSNPAVR Unmodified 1690.8427 0.84271808 109 O14828-2;O14828 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 0 6 0 1 57.583 57.583 3 0.0019655 17132 TMT1-5 62.203 33.439 30.522 51.261 56.552 66.778 47.653 76.458 29 51 58 65 51 73 1 1 1 1 1 1 10941 1634 109 1625 2569 3372 3372 1 AQQELEEQTR Unmodified 1230.584 0.58404378 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2 0 1 33.389 33.389 2 0.00010257 8298 TMT1-1 139.15 98.651 122.51 190.02 168.38 176.69 183.64 172.78 116 189 174 174 189 167 2 2 2 2 2 2 54531 1635 894 1626 2570 3373;3374 3373 2 AQQELEEQTRR Unmodified 1386.6852 0.68515481 894 P26038 MSN Moesin yes yes 0 0 0 0 1 2 0.816 1 1 1 30.033 30.033 3 1.2019E-07 7072 TMT1-1 150.51 105.15 584.55 804.61 620.16 497.78 624.95 873.34 552 803 641 500 648 836 5 5 5 5 5 5 106050 1636 894 1627 2571;2572;2573 3375;3376;3377;3378;3379 3376 5 AQQEQELAADAFK Unmodified 1447.6943 0.69432251 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 4 0 1 54.434 54.434 3 6.8302E-05 16013 TMT1-3 96.371 92.269 145.37 255.4 238.47 139.91 231.66 163.95 138 253 241 145 233 160 1 1 1 1 1 1 33925 1637 700 1628 2574 3380 3380 1 AQQLAEVEVK Unmodified 1113.603 0.60298831 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 4 0 1 49.023 49.023 3 0.0082175 13868 TMT1-3 65.842 48.406 37.793 81.379 71.338 57.805 71.1 75.789 36 80 73 58 73 73 1 1 1 1 1 1 11604 1638 1796 1629 2575 3381 3381 1 AQQSLELIQSK Unmodified 1243.6772 0.67721588 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 6 0 1 53.481 53.481 3 0.00066704 15521 TMT1-5 64.121 29.367 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1639 2109 1630 2576 3382 3382 1 AQQVSQGLDVLTAK Unmodified 1456.7886 0.78855725 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6.8 0.748 2 2 1 59.468 59.468 2;3 7.2634E-27 17250 TMT1-6 184.34 138.37 3636.9 4214.4 3919.4 3425.3 3800.1 4556.4 3431 4253 4014 3413 3933 4376 8 8 8 8 8 8 1288600 1640 776 1631 2577;2578;2579;2580;2581 3383;3384;3385;3386;3387;3388;3389;3390 3389 8 AQRPGAHAEDAR Unmodified 1277.6225 0.62249497 2500 Q99952-2;Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 yes no 0 0 0 0 1 3 0 1 16.837 16.837 4 0.00085121 3117 TMT1-2 80.014 49.402 3.1755 3.976 3.9437 2.9121 7.0121 5.1299 3 4 4 3 7 5 1 1 1 1 1 1 581.79 1641 2500 1632 2582 3391 3391 1 AQSELAAHQK Unmodified 1081.5516 0.55162144 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 7 0 1 29.707 29.707 3 0.0064752 5577 TMT1-6 69.01 34.478 30.687 44.164 34.864 28.802 43.426 37.137 29 44 36 29 44 36 1 1 1 1 1 1 2885.2 1642 890 1633 2583 3392 3392 1 AQSGPVR Unmodified 713.38204 0.38203692 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 3.25 1.48 1 1 1 1 20.724 20.724 2 0.0056478 3612 TMT1-3 133.79 89.344 184.84 152.57 183.9 187.48 200.25 131.8 174 158 187 185 204 129 6 6 6 6 6 6 40840 1643 1555;1556 1634 2584;2585;2586;2587 3393;3394;3395;3396;3397;3398 3395 6 AQSQEDGDYINANYIR Unmodified 1855.8337 0.83366954 1013 P35236;P35236-2;P35236-3 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 yes no 0 0 0 0 0 3 0 1 49.303 49.303 3 1.6118E-08 14988 TMT1-2 90.259 86.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1644 1013 1636 2588 3399 3399 1 AQTAPNKDVQR Unmodified 1226.6367 0.63674805 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 5 0 1 27.345 27.345 3 0.0029454 5067 TMT1-4 80.037 57.01 38.166 51.115 34.409 28.82 43.938 22.198 36 51 36 29 44 22 1 1 1 1 1 1 2209.7 1645 1184 1637 2589 3400 3400 1 AQTEGINISEEALNHLGEIGTK Unmodified 2323.1656 0.16556836 2955 Q9Y265 RUVBL1 RuvB-like 1 yes yes 0 0 0 0 0 5 0 2 66.238 66.238 3;4 3.7862E-23 20332 TMT1-4 125.62 89.369 115.68 129.82 105.38 94.049 128.29 128.52 109 131 109 94 131 124 2 2 2 2 2 2 20678 1646 2955 1638 2590;2591 3401;3402 3402 2 AQTVFEDLNQELLEELPILYNSR Unmodified 2733.3861 0.38612583 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 5.67 0.471 1 2 99.834 99.834 3;4 4.5008E-23 32956 TMT1-4 122.47 119.58 27.579 49.011 12.065 3.4299 18.38 38.918 26 48 12 4 19 37 4 4 2 2 3 3 13210 1647 2849 1639 2592;2593;2594 3403;3404;3405;3406 3404 4 AQVADVVVSR Unmodified 1042.5771 0.57710791 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 5 0 1 42.991 42.991 2 0.0064451 11235 TMT1-4 60 30.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1648 1176 1640 2595 3407 3407 1 AQVARPGGDTIFGK Unmodified 1415.7521 0.75211216 1203 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 1 8 0 2 45.885 45.885 3;4 1.3542E-05 11940 TMT1-7 100.41 82.308 453.67 737.9 492.13 440.48 416.33 750.31 429 730 516 437 442 715 2 2 2 2 2 2 104340 1649 1203 1641 2596;2597 3408;3409 3408 2 AQVEQELTTLR Unmodified 1286.683 0.68302954 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3.5 0.5 1 1 52.652 52.652 2 1.7715E-06 16289 TMT1-2 136.81 119.41 176.77 238.97 203.53 189.86 243.77 171.07 167 239 210 189 247 167 2 2 2 2 2 2 38354 1650 1833 1642 2598;2599 3410;3411 3410 2 AQVNTSDLNEELGQVEYVFTDK Unmodified 2498.1813 0.18127801 2965 Q9Y2G3 ATP11B Probable phospholipid-transporting ATPase IF yes yes 0 0 0 0 0 4 0 1 81.635 81.635 3 1.0861E-12 26689 TMT1-3 96.848 83.66 7.3654 22.826 5.1218 23.47 14.37 7.052 7 22 7 22 15 7 1 1 1 1 1 1 2536.3 1651 2965 1643 2600 3412 3412 1 AQVPFSSCLEAYGAPEQVDDFWSTALQAK Unmodified 3214.4917 0.49172988 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 88.331 88.331 4 8.994E-06 28450 TMT1-6 55.783 44.471 39.239 51.043 34.4 29.003 34.234 60.851 37 51 36 29 36 58 1 1 1 1 1 1 11092 1652 1122 1644 2601 3413 3413 1 AQVSLLIR Unmodified 898.56 0.56000128 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 8 0 1 52.715 52.715 2 0.013375 14634 TMT1-7 95.358 36.543 77.506 78.696 71.64 50.139 70.939 90.718 73 80 73 51 73 87 1 1 1 1 1 1 16243 1653 2479 1645 2602 3414 3414 1 AQVSLNVLNDLAK Unmodified 1383.7722 0.7721789 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 7 0 1 69.457 69.457 2 3.0691E-05 21202 TMT1-6 85.536 45.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1654 1138 1646 2603 3415 3415 1 AQVVSNLK Unmodified 857.49707 0.49706667 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.75 0.829 2 1 1 43.527 43.527 2 3.0638E-05 10988 TMT1-6 163.2 85.528 5335.8 7009 6902.7 4903.4 6182.9 7666.1 5044 7034 6995 4969 6378 7357 5 5 5 5 5 5 1064400 1655 3010 1647 2604;2605;2606;2607 3416;3417;3418;3419;3420 3417 5 AQYEDIAQK Unmodified 1064.5138 0.51383895 470 P04264 KRT1 Keratin, type II cytoskeletal 1 yes yes 0 0 0 0 0 4 0 1 43.765 43.765 2 0.0091421 11809 TMT1-3 90.108 41.321 68.405 101.59 139.09 84.936 99.153 105.9 65 102 138 87 102 102 1 1 1 1 1 1 8446.8 + 1656 470 1648 2608 3421 3421 1 AQYNALTLTFQR Unmodified 1424.7412 0.74121312 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 8 0 1 59.865 59.865 2 1.4628E-33 17510 TMT1-7 210.98 150.01 108.46 114.98 67.564 89.263 95.766 198.74 102 116 73 87 102 189 1 1 1 1 1 1 26605 1657 288 1649 2609 3422 3422 1 AQYPIADLVK Unmodified 1116.6179 0.61791009 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 6 0 1 61.107 61.107 2 6.4485E-05 18497 TMT1-5 143.89 93.537 260.52 356.61 275.31 183.81 337.96 299.5 246 356 283 189 341 290 2 2 2 2 2 2 26486 1658 1702 1650 2610 3423;3424 3423 2 AQYYLPDGSTIEIGPSR Unmodified 1865.9159 0.9159426 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 0 5 0 1 65.05 65.05 3 6.8661E-14 19878 TMT1-4 122.46 113.01 108.47 83.695 93.283 88.408 59.741 121.95 102 87 95 87 65 116 2 2 2 2 2 2 23587 1659 1381 1651 2611 3425;3426 3425 2 ARDDLITDLLNEAK Unmodified 1585.8312 0.83115034 1039 P36543;P36543-2 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 1 5 0 2 71.843 71.843 3;4 4.7832E-08 22523 TMT1-4 115.8 102.92 130.09 181.06 164.45 106.12 170.91 211.52 123 181 167 109 175 203 3 3 3 3 3 3 29347 1660 1039 1652 2612;2613 3427;3428;3429 3427 3 ARGEELDEDLFLQLTGGHEAF Unmodified 2346.1128 0.11280451 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 4.5 0.5 1 1 76.196 76.196 3;4 0.00036676 24202 TMT1-4 54.637 41.181 37.935 89.328 40.79 28.449 43.442 37.136 36 87 44 29 44 36 1 1 1 1 1 1 12471 1661 2112 1653 2614;2615 3430;3431 3431 2 ARPEDVISEGR Unmodified 1227.6208 0.62076364 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 1 2.5 0.5 1 1 35.391 35.391 3 0.00049938 9161 TMT1-1 98.182 73.847 138.42 188.42 200.19 167.32 174.38 211.42 131 189 203 167 181 203 2 2 2 2 2 2 27813 1662 883 1654 2616;2617 3432;3433 3432 2 ARPEDVVNLDLK Unmodified 1367.7409 0.74087877 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 1 5.5 0.5 1 1 53.038 53.038 3 1.1576E-13 15226 TMT1-4 167.73 104.91 2039.7 2463.8 2618.1 1996.8 2519 2743.4 1927 2486 2648 2013 2586 2641 3 3 3 3 3 3 432300 1663 2682 1655 2618;2619 3434;3435;3436 3434 3 ARPEYMLPVHFYGR Unmodified 1734.8664 0.86643041 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 1 8 0 1 50.822 50.822 4 3.5552E-05 13877 TMT1-7 91.28 73.913 92.111 100.25 123.48 70.143 121.56 112.73 87 102 123 73 123 109 1 1 1 1 1 1 17281 1664 648 1656 2620 3437 3437 1 ASAAPKPEPVPVQK Unmodified 1417.7929 0.79291434 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 1 7 0 1 41.344 41.344 3 1.3938E-07 10086 TMT1-6 113.54 101.56 138.51 188.65 185.72 151.87 170.14 142.25 131 189 189 152 174 138 1 1 1 1 1 1 21451 1665 2411 1657 2621 3438 3438 1 ASAATTAILIAR Unmodified 1157.6768 0.67682195 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 8 0 1 51.791 51.791 2 0.0091065 14285 TMT1-7 74.849 46.336 138.81 220.8 107.38 93.923 128.59 119.99 131 218 116 94 131 116 1 1 1 1 1 1 19335 1666 525 1658 2622 3439 3439 1 ASAELALGENSEVLK Unmodified 1529.7937 0.7937022 396 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 0 0 4 0 1 58.633 58.633 2 1.0629E-17 17687 TMT1-3 154.28 95.583 61.246 125.75 59.541 65.91 84.323 106.33 58 123 65 65 87 102 1 1 1 1 1 1 15931 1667 396 1659 2623 3440 3440 1 ASAELIEEEVAK Unmodified 1287.6558 0.65581174 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 2.5 0.5 1 1 59.293 59.293 3 1.2669E-07 18848 TMT1-2 119.45 63.223 145.64 249.68 197.91 135.16 206.21 241.43 138 247 203 138 211 232 3 3 3 3 3 3 25855 1668 664 1660 2624;2625 3441;3442;3443 3443 3 ASAFALQEQPVVNAVIDDTTK Unmodified 2216.1325 0.13247732 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 5.33 0.471 2 1 74.677 74.677 3;4 4.3663E-14 23734 TMT1-4 111.83 88.96 191.96 231.92 182.49 159.85 278.83 317.17 181 233 189 161 284 305 5 5 5 5 5 5 73860 1669 1046 1661 2626;2627;2628 3444;3445;3446;3447;3448 3446 5 ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK Unmodified 3331.4389 0.43890227 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 3 0 1 63.485 63.485 4 4.3842E-35 20556 TMT1-2 118.97 113.43 38.212 51.245 26.451 37.263 27.038 46.132 36 51 29 36 29 44 1 1 1 1 1 1 19288 1670 1766 1662 2629 3449 3449 1 ASAGPQPLLVQSCK Unmodified 1454.7551 0.75514863 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.33 3.09 1 1 1 49.687 49.687 3 8.4275E-44 13293 TMT1-6 215.09 156.72 2651.5 3428.9 3203.1 2310.6 2923.6 3547.4 2505 3441 3258 2339 3013 3406 6 6 6 6 6 6 699920 1671 3010 1663 2630;2631;2632 3450;3451;3452;3453;3454;3455 3452 6 ASAGSYISALR Unmodified 1094.572 0.57202253 922 P28062-2;P28062 PSMB8 Proteasome subunit beta type-8 yes no 0 0 0 0 0 6.5 0.5 1 1 48.875 48.875 2 1.657E-12 13634 TMT1-5 178.84 101.1 245.94 323.24 229.94 204.49 254.14 306.15 232 323 240 204 262 294 2 2 2 2 2 2 33397 1672 922 1664 2633;2634 3456;3457 3456 2 ASALEQFVNSVR Acetyl (Protein N-term) 1361.6939 0.69392858 2933 Q9UNS2 COPS3 COP9 signalosome complex subunit 3 yes yes 0 1 0 0 0 5.5 0.5 1 1 85.466 85.466 2 3.8847E-09 28059 TMT1-5 71.221 67.65 46.661 50.282 49.968 44.04 57.09 45.275 44 51 51 44 58 44 2 2 2 2 2 2 14981 1673 2933 1665 2635;2636 3458;3459 3459 2 ASAPAADPPR Unmodified 951.47739 0.47739386 2718 Q9NR12;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 3 0 1 28.338 28.338 2 0.00098216 6677 TMT1-2 104.01 60.206 107.98 129.82 136.47 101.36 105.71 136.63 102 131 138 102 110 131 2 2 2 2 2 2 16106 1674 2718 1666 2637 3460;3461 3461 2 ASAPAPGHH Unmodified 843.39875 0.39874961 1335 P56378;P56378-2 MP68 6.8 kDa mitochondrial proteolipid yes no 0 0 0 0 0 3 0 1 18.278 18.278 3 0.0031666 3214 TMT1-2 80.229 66.022 37.25 25.724 29.437 29.006 49.808 33.757 35 27 30 29 50 33 3 3 3 3 3 3 7292.3 1675 1335 1667 2638 3462;3463;3464 3463 3 ASAPESGLLSK Unmodified 1058.5608 0.56078914 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 47.723 47.723 2 1.4989E-05 13248 TMT1-5 122.69 83.669 76.844 154.56 118.53 109.87 117.36 182.14 73 152 123 109 123 174 1 1 1 1 1 1 16863 1676 2382 1668 2639 3465 3465 1 ASATSATLELDR Unmodified 1233.6201 0.62009493 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 0 3 0.816 1 1 1 43.896 43.896 2 2.1377E-13 12805 TMT1-2 172.1 123.94 346.2 389.15 274.78 312.23 253.24 371.2 326 392 290 305 268 355 4 4 4 4 4 4 62414 1677 165 1669 2640;2641;2642 3466;3467;3468;3469 3467 4 ASAVYQALQK Unmodified 1077.5819 0.58185893 1992 Q5VWZ2;Q5VWZ2-2 LYPLAL1 Lysophospholipase-like protein 1 yes no 0 0 0 0 0 8 0 1 53.217 53.217 2 0.00010724 14883 TMT1-7 138.66 73.407 77.435 86.053 77.381 81.378 77.089 83.08 73 87 80 80 80 80 1 1 1 1 1 1 10195 1678 1992 1670 2643 3470 3470 1 ASAYNNLK Unmodified 879.44503 0.4450311 829 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 0 0 0 0 6 0 1 38.94 38.94 2 0.00098074 9764 TMT1-5 98.933 48.036 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1679 829 1671 2644 3471 3471 1 ASCLYGQLPK Unmodified 1135.5696 0.56957969 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 5.75 2.77 1 2 1 51.856 51.856 2;3 0.00088601 14214 TMT1-6 92.538 72.157 1225.3 1821.6 1356.3 1135.2 1534 1784.4 1158 1811 1407 1139 1575 1715 5 5 5 5 5 5 359830 1680 583 1672 2645;2646;2647;2648 3472;3473;3474;3475;3476 3474 5 ASDAEGDVAALNR Unmodified 1287.6055 0.6055075 1487 P67936-2 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 0 2 0 2 42.237 42.237 2 5.2934E-16 11819 TMT1-1 172.21 131.44 46.502 64.95 64.287 42.92 71.271 90.708 44 65 65 44 73 87 1 1 1 1 1 1 17141 1681 1487 1673 2649;2650 3477;3478 3477 2 ASDCEGQDVVSLLR Unmodified 1547.725 0.72497071 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 3.5 0.5 1 1 58.578 58.578 2;3 1.5914E-05 18668 TMT1-2 95.854 80.588 46.702 50.395 43.074 28.609 27.692 38.652 44 51 44 29 29 37 1 1 1 1 1 1 6326.5 1682 1275 1674 2651;2652 3479;3480 3479 2 ASDNLVK Unmodified 745.39702 0.39701828 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.33 1.7 1 1 1 38.318 38.318 2 0.0048483 9335 TMT1-4 135.84 56.389 3864.1 4598 4179 3175.8 4330.9 4935.7 3646 4632 4266 3208 4442 4746 4 4 4 4 4 4 935350 1683 3010 1675 2653;2654;2655 3481;3482;3483;3484 3484 4 ASDVHEVR Unmodified 911.44609 0.44609374 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5 2.45 1 1 1 22.18 22.18 3 2.3851E-08 4065 TMT1-1 169.09 108.2 357.18 442.18 368.08 404.03 481.2 372.16 337 444 383 398 490 362 5 5 5 5 5 5 42864 1684 706;707 1676 2656;2657;2658 3485;3486;3487;3488;3489 3485 5 ASDVHEVRK Unmodified 1039.5411 0.54105675 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 5.33 1.25 1 1 1 26.005 26.005 4 0.0035639 4714 TMT1-3 77.677 70.297 219.11 325.08 228.36 240.51 203.33 275.62 207 323 240 236 214 264 3 3 3 3 3 3 15931 1685 706;707 1677 2659;2660;2661 3490;3491;3492 3490 3 ASEAGEVPFNHEILR Unmodified 1667.8267 0.82673367 2081 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 0 4 0 1 47.776 47.776 3 1.1073E-05 13385 TMT1-3 92.952 75.733 76.961 116.03 131.65 61.609 84.521 106.32 73 116 131 65 87 102 1 1 1 1 1 1 25771 1686 2081 1678 2662 3493 3493 1 ASEEAFVK Unmodified 879.4338 0.43379771 597 P09497-2 CLTB Clathrin light chain B yes yes 0 0 0 0 0 4 0 1 43.735 43.735 2 0.026227 11748 TMT1-3 84.498 30.09 115.34 182.86 116.32 116.97 153.64 242.93 109 181 123 116 160 232 1 1 1 1 1 1 32485 1687 597 1679 2663 3494 3494 1 ASEEHLK Unmodified 812.40283 0.40283194 846 P22392-2;P22392 NME2 Nucleoside diphosphate kinase B yes no 0 0 0 0 0 4 1.41 1 1 1 1 1 28.381 28.381 3 0.0010751 6691 TMT1-2 134.06 68.591 727.32 1081.8 1096.1 937.21 1380.9 1087.4 689 1080 1115 941 1397 1057 7 7 7 7 7 7 90336 1688 846 1680 2664;2665;2666;2667;2668 3495;3496;3497;3498;3499;3500;3501 3497 7 ASEELQKDLEEVK Acetyl (Protein N-term) 1558.7726 0.77263241 2678 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 0 1 0 0 1 2 0 2 63.594 63.594 2;3 0.0002316 20319 TMT1-1 50.563 11.557 115.65 137.3 103.81 119.21 73.993 122.61 109 138 109 116 80 117 2 2 2 2 2 2 36737 1689 2678 1681 2669;2670 3502;3503 3503 2 ASENAIVWK Unmodified 1016.5291 0.52909508 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 0 6 0 1 51.673 51.673 2 0.022704 14832 TMT1-5 76.943 31.263 115.51 136.91 127.75 116.7 131.68 212.64 109 138 131 116 138 203 1 1 1 1 1 1 10452 1690 2387 1682 2671 3504 3504 1 ASEQIYGTPSSSPYECLR Unmodified 2043.9208 0.92076999 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 4 0 1 51.976 51.976 3 0.0011033 15056 TMT1-3 44.729 34.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1691 1762 1683 2672 3505 3505 1 ASEVEVK Unmodified 760.39668 0.39668393 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 3.5 0.5 1 1 36.973 36.973 2 0.0266 9079 TMT1-3 92.47 39.787 168.96 333.61 175.13 190.8 225.63 240.87 160 327 189 188 232 232 2 2 2 2 2 2 18219 1692 1924 1684 2673;2674 3506;3507 3507 2 ASEWVQQVSGLMDGK Unmodified 1633.777 0.77700628 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 74.904 74.904 3 0.01319 23295 TMT1-6 50.787 23.138 77.341 125.73 59.476 89.853 90.038 121.09 73 124 66 87 94 116 2 2 2 2 2 2 8042.7 1693 1184 1685 2675 3508;3509 3508 2 ASFNHFDKDHGGALGPEEFK Unmodified 2202.013 0.013030887 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 6 0 1 48.538 48.538 5 1.8184E-05 13519 TMT1-5 72.883 53.303 449.85 611.08 519.56 530.24 613.02 598.66 425 611 538 524 629 578 2 2 2 2 2 2 64575 1694 195 1686 2676 3510;3511 3510 2 ASFNHFDR Unmodified 992.44643 0.44642809 672;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;P35609-2;P35609 ACTN1;ACTN3;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-2 no no 0 0 0 0 0 7 1.58 1 1 1 1 33.451 33.451 3 2.4566E-06 6020 TMT1-8 164.68 116.94 553.11 725.96 741.67 624.4 714.13 695.97 523 729 754 624 733 672 5 5 5 5 5 5 93090 1695 672;1022 1687 2677;2678;2679;2680 3512;3513;3514;3515;3516 3516 5 ASFNHFDRDHSGTLGPEEFK Unmodified 2290.0403 0.04030827 672 P12814;P12814-3 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4.5 2.18 1 2 1 46.7 46.7 4;5 1.0707E-30 12626 TMT1-4 142.26 111.57 1744.2 1992.9 2000.2 1500.1 1828 2330.3 1646 2015 2029 1513 1890 2235 6 6 6 6 6 6 233420 1696 672 1688 2681;2682;2683;2684 3517;3518;3519;3520;3521;3522 3519 6 ASFPIITVTAAHSGTYR Unmodified 1790.9315 0.93153309 2690 Q9HCN6-2;Q9HCN6;Q9HCN6-3 GP6 Platelet glycoprotein VI yes no 0 0 0 0 0 9 0 1 54.707 54.707 3 6.0051E-64 13632 TMT1-8 219.53 184.23 99.494 138.24 112.81 87.726 92.209 91.177 94 138 116 88 95 88 2 2 2 2 2 2 25703 1697 2690 1689 2685 3523;3524 3523 2 ASFPQGPIGGANR Unmodified 1270.6418 0.64183343 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 7 0 1 45.497 45.497 3 7.7867E-05 11717 TMT1-6 95.094 68.71 68.737 71.213 109.11 94.53 90.886 90.149 65 73 109 94 94 87 1 1 1 1 1 1 18463 1698 291 1690 2686 3525 3525 1 ASFSQPLFQAVAAICR Unmodified 1764.8981 0.89812447 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 9 0 2 76.511 76.511 2;3 8.1652E-20 22278 TMT1-8 137.58 118.18 61.471 48.665 86.984 88.007 101.03 260.42 58 51 87 87 109 247 2 2 2 2 2 2 82812 1699 2112 1691 2687;2688 3526;3527 3527 2 ASFTCTCKPGWQGEK Unmodified 1755.7709 0.77087505 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 1 8 0 1 46.505 46.505 3 1.9287E-07 12233 TMT1-7 107.74 70.185 84.281 170.03 117.9 102.36 111.69 143.92 80 167 123 102 116 138 1 1 1 1 1 1 12759 1700 529 1692 2689 3528 3528 1 ASFVQTR Unmodified 807.4239 0.42390173 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 7 0 1 35.387 35.387 2 0.0032996 7754 TMT1-6 87.251 45.022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1701 2744 1693 2690 3529 3529 1 ASFVTEVLAHSGR Acetyl (N-term) 1414.7205 0.72047768 164 O43264-2;O43264 ZW10 Centromere/kinetochore protein zw10 homolog yes no 1 0 0 0 0 5 0 1 73.268 73.268 2 0.0004537 23125 TMT1-4 44.612 22.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1702 164 1694 2691 3530 3530 1 ASGADSKGDDLSTAILK Acetyl (N-term) 1689.8421 0.84210896 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 1 0 0 0 1 4 0 1 60.048 60.048 3 7.852E-05 18276 TMT1-3 50.079 23.644 231.48 218.98 224.27 206.57 219.42 309.27 218 224 229 205 229 296 1 1 1 1 1 1 120110 1703 1311 1695 2692 3531 3531 1 ASGANYSFHK Unmodified 1080.4989 0.49885759 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 7.33 1.25 1 1 1 37.095 37.095 3 0.00050051 8417 TMT1-6 98.898 34.062 349.07 491.73 427.81 357.56 379.59 621.31 330 491 439 357 399 593 2 2 2 2 2 2 42165 1704 2887 1696 2693;2694;2695 3532;3533;3534 3533 3 ASGAQLEAK Unmodified 873.4556 0.45559579 2549 Q9BVC6 TMEM109 Transmembrane protein 109 yes yes 0 0 0 0 0 5 0 1 35.813 35.813 2 0.046953 8457 TMT1-4 67.207 26.261 38.07 50.849 50.711 27.581 58.14 36.717 36 51 51 29 58 36 1 1 1 1 1 1 23541 1705 2549 1697 2696 3535 3535 1 ASGIYYVPK Unmodified 996.52803 0.52803245 2099 Q7Z5R6;Q70E73-5;Q70E73-2;Q70E73-8;Q70E73-7;Q70E73-4;Q70E73-3;Q70E73-9;Q70E73-6;Q70E73 APBB1IP;RAPH1 Amyloid beta A4 precursor protein-binding family B member 1-interacting protein;Ras-associated and pleckstrin homology domains-containing protein 1 yes no 0 0 0 0 0 7 0 1 50.817 50.817 2 0.0076227 13840 TMT1-6 92.439 59.599 46.642 65.339 40.454 67.319 69.893 98.21 44 65 44 65 73 94 1 1 1 1 1 1 6231.2 1706 2099 1698 2697 3536 3536 1 ASGLGDHCEDINECLEDK Unmodified 2060.8415 0.84153339 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3 0.816 1 1 1 48.417 48.417 3 1.6377E-30 14393 TMT1-1 170.47 154.16 439.7 410.33 413.1 325.59 382.61 424.01 414 420 420 327 394 408 4 4 4 4 4 4 126810 1707 1797 1699 2698;2699;2700 3537;3538;3539;3540 3537 4 ASGNLETK Unmodified 818.4134 0.41339662 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 4.5 0.5 1 1 33.534 33.534 2 0.0056542 7495 TMT1-4 115.86 40.169 606.28 332.78 433.91 551.3 461.81 404.69 569 358 445 536 479 392 2 2 2 2 2 2 54600 1708 2959 1700 2701;2702 3541;3542 3542 2 ASGPGLNTTGVPASLPVEFTIDAK Unmodified 2341.2165 0.2165413 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.8 0.748 2 2 1 74.675 74.675 3;4;5 8.1662E-18 23906 TMT1-5 105.16 84.9 923.67 1225.9 974.97 671.34 907.83 1145.6 872 1226 1001 683 935 1099 6 6 6 6 6 6 491400 1709 831 1701 2703;2704;2705;2706;2707 3543;3544;3545;3546;3547;3548 3544 6 ASGPPVSELITK Unmodified 1197.6605 0.66050319 630;745;744 P10412;P16402;P16403 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 0 0 0 0 0 6.33 0.471 2 1 56.066 56.066 2;3 4.1645E-09 16530 TMT1-5 141.13 112.92 670.35 1060.2 771.54 1142.1 1337.6 1432.9 634 1051 822 1110 1376 1380 3 3 3 3 3 3 232560 1710 630;744;745 1702 2708;2709;2710 3549;3550;3551;3552 3550 4 ASGQAFELILSPR Unmodified 1387.746 0.74596415 752 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 0 7.5 0.5 1 1 65.734 65.734 2 2.0695E-05 19689 TMT1-6 110.92 80.236 161.9 256.59 164.53 168.88 204.66 241.47 153 254 174 167 211 232 3 3 3 3 3 3 40727 1711 752 1703 2711;2712 3553;3554;3555 3553 3 ASGVAVSDGVIK Acetyl (N-term) 1143.6136 0.61355299 865 P23528 CFL1 Cofilin-1 yes yes 1 0 0 0 0 3 1.41 1 1 1 1 1 57.029 57.029 2 3.9071E-32 18102 TMT1-2 100.48 66.224 7433.7 12472 9089.3 7269.1 9983.3 10736 7037 12336 9426 7318 10216 10339 12 12 12 12 12 12 3640800 1712 865 1704 2713;2714;2715;2716;2717 3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567 3562 12 ASGVEAR Unmodified 688.3504 0.35040244 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 3 0 1 21.544 21.544 2 0.04473 4021 TMT1-2 84.097 19.294 46.783 34.431 42.998 51.812 72.731 36.301 44 36 44 51 73 36 1 1 1 1 1 1 3007.9 1713 944 1705 2718 3568 3568 1 ASGVEGADVVK Unmodified 1030.5295 0.52948901 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 3.33 0.943 1 2 42.247 42.247 2;3 1.5487E-11 11107 TMT1-3 169.93 140.59 355.27 466.9 488.23 345.55 536.54 483.58 336 469 493 352 544 468 3 3 3 3 3 3 115210 1714 787 1706 2719;2720;2721 3569;3570;3571 3570 3 ASGVQVADEVCR Acetyl (N-term) 1331.614 0.6139637 1364 P60981 DSTN Destrin yes yes 1 0 0 0 0 2 0 1 48.228 48.228 2 1.8773E-12 14175 TMT1-1 121.6 111.32 77.667 64.034 56.992 58.656 71.317 68.321 73 66 59 58 73 66 2 2 2 2 2 2 41848 1715 1364 1707 2722 3572;3573 3572 2 ASHGYGGK Unmodified 775.3613 0.36130147 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 5.5 0.5 1 1 23.538 23.538 3 0.002426 3923 TMT1-4 96.492 53.491 133.13 98.141 84.384 95.904 96.189 116.65 125 102 88 94 100 112 4 4 4 4 4 4 5578.6 1716 1766 1708 2723;2724 3574;3575;3576;3577 3575 4 ASHLGLAR Unmodified 823.46644 0.46643525 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 7 0 1 28.622 28.622 3 0.022613 5125 TMT1-6 60.972 32.718 23.283 21.233 36.219 30.111 27.66 37.587 22 22 36 30 29 36 1 1 1 1 1 1 1908.2 1717 409 1709 2725 3578 3578 1 ASHPEDPASVVEAR Unmodified 1463.7005 0.70047052 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 2 0 1 36.108 36.108 3 2.4159E-07 9372 TMT1-1 106.29 98.379 30.432 89.863 39.049 67.659 56.297 36.77 29 87 44 65 58 36 1 1 1 1 1 1 7289.2 1718 2866 1710 2726 3579 3579 1 ASHPSVTER Unmodified 982.48321 0.48320752 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 3 0 1 19.975 19.975 3 0.016209 3475 TMT1-2 60.717 44.162 23.212 44.777 28.333 5.4208 28.795 37.554 22 44 29 7 29 36 1 1 1 1 1 1 1766.4 1719 1736 1711 2727 3580 3580 1 ASHTAPQVLFSHR Unmodified 1449.7477 0.74769548 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 33.506 33.506 4 4.4993E-06 6968 TMT1-7 108.32 89.367 283.01 423.12 407.27 311.34 345.38 369.64 268 422 414 313 356 356 4 4 4 4 4 4 84137 1720 129 1712 2728;2729 3581;3582;3583;3584 3583 4 ASHTAPQVLFSHREPPLELK Unmodified 2256.2015 0.20150036 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 7 0 1 47.529 47.529 5 7.768E-08 12531 TMT1-6 90.718 63.222 352.28 524.95 400.84 310.62 404.06 489.49 333 522 414 313 416 470 2 2 2 2 2 2 22123 1721 129 1713 2730 3585;3586 3585 2 ASIEIANESGETPLDIAK Unmodified 1856.9367 0.93673763 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 64.372 64.372 3 0.0001661 20048 TMT1-3 70.094 48.843 30.406 66.047 63.6 58.68 49.088 45.503 29 65 65 58 51 44 1 1 1 1 1 1 14607 1722 156 1714 2731 3587 3587 1 ASIELVEAEVSELETR Unmodified 1773.8996 0.89962384 1815 Q15027 ACAP1 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 80.407 80.407 3 0.0015553 26201 TMT1-1 63.691 46.479 16.063 6.3649 0 31.597 5.3266 15.838 15 7 0 29 7 15 1 1 0 1 1 1 1848.5 1723 1815 1715 2732 3588 3588 1 ASIHEAWTDGK Unmodified 1213.5728 0.57275081 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 6.4 1.02 1 2 1 1 41.776 41.776 3;4 3.4351E-07 10734 TMT1-4 136.81 93.072 4827.1 6408.3 5810.4 4447.9 5969.8 6379.2 4561 6420 5931 4489 6112 6144 9 9 9 9 9 9 984760 1724 672;195 1716 2733;2734;2735;2736;2737 3589;3590;3591;3592;3593;3594;3595;3596;3597 3590 9 ASILDEYENSLSR Acetyl (Protein N-term) 1537.726 0.72601657 2821 Q9P253 VPS18 Vacuolar protein sorting-associated protein 18 homolog yes yes 0 1 0 0 0 2 0 1 79.382 79.382 2 1.7533E-08 26000 TMT1-1 84.658 55.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1725 2821 1717 2738 3598 3598 1 ASILNTWISLK Unmodified 1244.7129 0.71287311 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 9 0 2 77.084 77.084 2;3 1.1415E-10 22411 TMT1-8 156.51 101.9 76.905 132.07 127.47 133.78 95.845 136.91 73 131 131 131 102 131 2 2 2 2 2 2 31290 1726 843 1718 2739;2740 3599;3600 3599 2 ASILTGK Unmodified 688.41194 0.41194006 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 8 0 1 46.259 46.259 2 0.019759 12124 TMT1-7 97.798 20.74 184.88 385.1 340.25 250.76 233.99 404.8 176 379 347 252 248 386 1 1 1 1 1 1 19045 1727 725 1719 2741 3601 3601 1 ASIPFSVVGSNQLIEAK Unmodified 1758.9516 0.95159983 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 8 0 2 70.576 70.576 2;3 2.336E-29 21697 TMT1-7 169.62 129.99 106.5 167.62 172.59 114.13 126.31 159.49 101 167 174 116 131 153 2 2 2 2 2 2 108720 1728 1812 1720 2742;2743 3602;3603 3602 2 ASIQYSK Unmodified 795.41267 0.41266834 1638 Q10588;Q10588-2 BST1 ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 yes no 0 0 0 0 0 7 0 1 39.442 39.442 2 0.025711 9330 TMT1-6 93.162 24.78 77.534 93.884 54.099 59.119 55.884 60.233 73 94 58 58 58 58 1 1 1 1 1 1 6474.5 1729 1638 1721 2744 3604 3604 1 ASITALEAK Unmodified 902.5073 0.50729701 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 50.372 50.372 2 4.2791E-39 14176 TMT1-5 229.44 88.049 8204 11304 10651 7938.4 10533 13202 7758 11311 10836 8025 10852 12667 11 11 11 11 11 11 1228200 1730 1019 1722 2745;2746;2747;2748;2749 3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615 3609 11 ASKPGWWLLNTEVGENQR Unmodified 2084.0439 0.043937085 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 8.5 0.5 1 1 62.139 62.139 3 5.4866E-10 18473 TMT1-7 108.18 73.515 191.29 252.74 276.37 161.96 218.06 286.93 181 254 277 167 225 275 4 4 4 4 4 4 47134 1731 666 1723 2750;2751 3616;3617;3618;3619 3617 4 ASLAETDKITLEVAK Unmodified 1587.872 0.87195252 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 1 6 0 1 57.698 57.698 3 3.2173E-17 17171 TMT1-5 149.22 111.26 275.03 259 264.29 196.73 209.23 223.22 259 265 268 198 216 215 1 1 1 1 1 1 28984 1732 1057 1724 2752 3620 3620 1 ASLASLPPLHVAK Unmodified 1302.766 0.76597131 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 9 0 2 55.295 55.295 3;4 5.4592E-05 13850 TMT1-8 94.191 30.908 295.23 322.93 240.67 249.76 370.18 399.85 278 326 252 248 378 385 2 2 2 2 2 2 21040 1733 1762 1725 2753;2754 3621;3622 3621 2 ASLCISTK Unmodified 878.45315 0.45315295 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 45.657 45.657 2 5.6772E-07 11737 TMT1-7 134.48 63.954 108.38 107.18 89.099 126.43 143.62 65.192 102 109 94 123 145 65 1 1 1 1 1 1 9428.3 1734 606 1726 2755;2756 3623;3624 3624 2 ASLDRPFTNLESAFYSIVGLSSLGAQVPDAK Unmodified 3252.6667 0.66665778 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 1 9 0 1 93.997 93.997 5 3.1169E-06 28864 TMT1-8 53.522 40.18 93.189 139.05 89.659 96.947 82.11 159.69 88 138 95 95 88 152 2 2 2 2 2 2 19640 1735 479 1727 2757 3625;3626 3625 2 ASLEDAPVDDLTR Unmodified 1400.6783 0.6783381 2086 Q7Z2W4;Q7Z2W4-3;Q7Z2W4-2 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 0 2 0 1 54.319 54.319 2 0.023785 16627 TMT1-1 63.611 56.921 23.37 21.474 21.401 22.377 20.943 30.316 22 22 22 22 22 29 1 1 1 1 1 1 4507.2 1736 2086 1728 2758 3627 3627 1 ASLGSLEGEAEAEASSPK Unmodified 1731.8163 0.81628814 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2.5 0.5 1 1 59.002 59.002 3 8.1558E-25 18754 TMT1-2 121.82 99.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1737 1632 1729 2759;2760 3628;3629 3629 2 ASLGTGTASPR Unmodified 1016.5251 0.52507234 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 5.5 0.5 1 1 31.858 31.858 2 2.1855E-07 6816 TMT1-4 111.61 66.525 217.01 175.15 167.72 200.76 184.63 172.75 204 181 174 196 191 167 1 1 1 1 1 1 16058 1738 2849 1730 2761;2762 3630;3631 3630 2 ASLHGGEPTTIIR Unmodified 1350.7256 0.72556306 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 5 0 1 37.836 37.836 3 7.2663E-09 9177 TMT1-4 126.83 92.147 115.5 120.69 143.21 131.57 163.75 142.44 109 123 145 131 167 138 1 1 1 1 1 1 32896 1739 704 1731 2763 3632 3632 1 ASLINNAFQLVSIGK Unmodified 1573.8828 0.88279198 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 79.903 79.903 3 3.3191E-08 23602 TMT1-8 108.06 87.636 115.86 121.71 80.933 119.31 141.28 143.08 109 123 87 116 145 138 2 2 2 2 2 2 20114 1740 2791 1732 2764 3633;3634 3634 2 ASLISAVSDK Unmodified 989.53933 0.53932542 2494 Q99816;Q99816-2 TSG101 Tumor susceptibility gene 101 protein yes no 0 0 0 0 0 7 0 1 55.155 55.155 2 9.8543E-07 15559 TMT1-6 163.88 142.98 161.11 211.06 154.51 115.19 126.81 143.49 152 211 160 116 131 138 1 1 1 1 1 1 20902 1741 2494 1733 2765 3635 3635 1 ASLLAVLSR Unmodified 928.57057 0.57056597 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 9 0 1 65.249 65.249 2 0.016935 17745 TMT1-8 81.972 27.915 115.5 168.2 101.65 126.02 183.86 203.69 109 167 109 124 188 196 2 2 2 2 2 2 29091 1742 2779 1734 2766 3636;3637 3636 2 ASLLQSDR Acetyl (Protein N-term) 930.47706 0.47705951 2888 Q9UJW0-3;Q9UJW0 DCTN4 Dynactin subunit 4 yes no 0 1 0 0 0 2 0 1 50.857 50.857 2 0.0059594 15261 TMT1-1 56.659 30.72 15.738 36.76 28.896 28.72 66.72 29.01 15 36 30 29 66 29 1 1 1 1 1 1 4103.9 1743 2888 1735 2767 3638 3638 1 ASLNPSDTPPSVVNEDFLHDLK Unmodified 2394.1703 0.17031939 38 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 0 5 0 1 67.942 67.942 4 4.3028E-06 21047 TMT1-4 66.889 59.937 54.097 57.115 56.796 50.739 86.083 75.362 51 58 58 51 87 73 1 1 1 1 1 1 11657 1744 38 1736 2768 3639 3639 1 ASLPGVK Unmodified 670.40138 0.40137537 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 8 0 1 43.916 43.916 3 0.015656 11170 TMT1-7 73.039 30.039 122.54 220.33 137.22 131 154.88 157.61 116 217 145 130 159 152 1 1 1 1 1 1 9208.4 1745 874 1737 2769 3640 3640 1 ASLQVLGTVGEPINPEAWLWYHR Unmodified 2635.3547 0.35470654 2719 Q9NR19;Q9NR19-2 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic yes no 0 0 0 0 0 8 0 1 80.548 80.548 4 0.0023511 25545 TMT1-7 43.176 28.247 38.19 34.993 44.038 28.689 20.396 37.794 36 36 44 29 22 36 1 1 1 1 1 1 3122.6 1746 2719 1738 2770 3641 3641 1 ASLQYLLR Unmodified 962.55492 0.5549159 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 9 0 1 58.308 58.308 2 0.0074373 15048 TMT1-8 110.12 9.7253 153.35 231.37 180.11 242.78 235.7 243.78 145 230 190 236 244 235 1 1 1 1 1 1 28174 1747 2309 1739 2771 3642 3642 1 ASLSLAPVNIFK Acetyl (Protein N-term) 1300.7391 0.73908786 1504 P78371 CCT2 T-complex protein 1 subunit beta yes yes 0 1 0 0 0 8 0 1 86.694 86.694 2 7.8828E-12 27895 TMT1-7 88.948 41.75 169.53 208.93 184.34 151.83 176.69 195.37 160 210 189 152 182 188 2 2 2 2 2 2 71327 1748 1504 1740 2772 3643;3644 3644 2 ASLTLEEK Unmodified 889.47566 0.47566253 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 0 5 0 2 46.196 46.196 2 0.015888 12769 TMT1-4 92.062 21.795 347.89 306.78 421.9 350.68 241.56 537.83 328 317 423 348 264 511 2 2 2 2 2 2 98652 1749 2029 1741 2773;2774 3645;3646 3646 2 ASLTLSGGPSALAFDLSK Unmodified 1733.92 0.91996535 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 8 0 1 74.328 74.328 3 0.015826 23168 TMT1-7 42.028 20.727 77.17 92.873 116.03 78.939 84.273 90.337 73 94 116 80 87 87 1 1 1 1 1 1 13657 1750 2539 1742 2775 3647 3647 1 ASMGTLAFDEYGRPFLIIK Acetyl (N-term) 2170.1133 0.1132622 1161 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 1 0 0 0 1 7 0 1 86.132 86.132 3 3.2974E-09 27656 TMT1-6 96.163 82.536 54.109 64.703 48.372 59.593 48.789 52.974 51 65 51 58 51 51 1 1 1 1 1 1 25957 1751 1161 1743 2776 3648 3648 1 ASNLENSTYDLYTIPK Unmodified 1827.8891 0.88905915 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 6 0 1 63.125 63.125 3 2.0376E-08 19325 TMT1-5 88.992 73.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1752 1287 1744 2777 3649 3649 1 ASNLLYGQLK Unmodified 1105.6132 0.61315906 2144 Q8IXB1;Q8IXB1-2 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 0 0 8 0 1 56.943 56.943 2 0.027171 16367 TMT1-7 72.2 43.457 37.824 73.91 72.477 42.278 79.436 67.023 36 73 73 44 80 65 1 1 1 1 1 1 4219.7 1753 2144 1745 2778 3650 3650 1 ASNTAEVFFDGVR Unmodified 1411.6732 0.67319314 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 58.488 58.488 3 2.4661E-06 17319 TMT1-4 91.441 64.112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1754 1194 1746 2779 3651 3651 1 ASPDWGYDDK Acetyl (Protein N-term) 1194.4829 0.48293275 405 P00915 CA1 Carbonic anhydrase 1 yes yes 0 1 0 0 0 2 0 1 58.481 58.481 2 0.0036241 18235 TMT1-1 65.305 48.972 61.729 49.382 43.053 28.753 20.1 46.33 58 51 44 29 22 44 1 1 1 1 1 1 8410.8 1755 405 1747 2780 3652 3652 1 ASPDWGYDDKNGPEQWSK Acetyl (Protein N-term) 2120.9076 0.90756276 405 P00915 CA1 Carbonic anhydrase 1 yes yes 0 1 0 0 1 4 0 1 61.52 61.52 3 7.1148E-06 18803 TMT1-3 80.603 72.213 200.79 247.14 127.49 134.36 65.214 114.33 189 247 138 131 72 109 2 2 2 2 2 2 14497 1756 405 1748 2781 3653;3654 3653 2 ASPFLLQYIQEEIPNYR Unmodified 2080.0629 0.062941193 1781 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 0 7 0 1 83.502 83.502 3 1.6445E-24 26681 TMT1-6 120.77 104.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1757 1781 1749 2782 3655 3655 1 ASPLTHSPPDEL Unmodified 1262.6143 0.61428128 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 0 3 0 1 47.344 47.344 2 0.0036438 14234 TMT1-2 80.239 60.452 37.679 64.873 104.46 40.824 55.406 98.623 36 65 102 44 58 94 1 1 1 1 1 1 10615 1758 2528 1750 2783 3656 3656 1 ASPSEVVFLDDIGANLKPAR Unmodified 2098.1059 0.10586864 1008 P34913;P34913-3;P34913-2 EPHX2 Bifunctional epoxide hydrolase 2;Cytosolic epoxide hydrolase 2;Lipid-phosphate phosphatase yes no 0 0 0 0 1 6 0 1 70.295 70.295 4 0.0035467 22152 TMT1-5 50.425 33.545 38.102 66.049 32.435 53.02 42.019 45.705 36 65 36 51 44 44 1 1 1 1 1 1 6720.6 1759 1008 1751 2784 3657 3657 1 ASQNLVVLAR Unmodified 1069.6244 0.62439245 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 7 0 1 47.515 47.515 2 0.00091603 12540 TMT1-6 79.16 48.442 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1760 2642 1752 2785 3658 3658 1 ASQSQGIQQLLQAEK Acetyl (N-term) 1669.8635 0.8635131 266 O75348;O95670-2;O95670 ATP6V1G1;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 1 0 0 0 0 4.5 0.5 1 1 69.773 69.773 3 0.00048033 22066 TMT1-3 57.328 37.566 115.03 190.62 162.54 137.8 177.85 180.41 109 189 167 138 182 174 2 2 2 2 2 2 29821 1761 266 1753 2786;2787 3659;3660 3659 2 ASQSSPGDFSISVR Unmodified 1436.6896 0.68957148 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 5 0 1 48.535 48.535 2 1.2167E-06 13450 TMT1-4 106.54 67.542 68.499 101.85 123.13 78.541 82.972 128.75 65 102 123 80 87 123 1 1 1 1 1 1 19715 1762 300 1754 2788 3661 3661 1 ASREEILAQAK Unmodified 1214.6619 0.66190017 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 4.75 2.28 1 1 1 1 38.557 38.557 3;4 0.00012981 9306 TMT1-4 103.88 61.325 2747.3 3628.7 3341.2 2793.5 2848.5 4053.7 2596 3637 3417 2787 2979 3879 5 5 5 5 5 5 606330 1763 1019 1755 2789;2790;2791;2792 3662;3663;3664;3665;3666 3663 5 ASSAEGDEGTVVALAGVLQSGFQELSLNK Acetyl (Protein N-term) 2918.4509 0.45091093 2023 Q6P1A2 LPCAT3 Lysophospholipid acyltransferase 5 yes yes 0 1 0 0 0 6 0 1 109.6 109.6 4 6.4109E-07 34427 TMT1-5 53.844 34.8 7.4186 7.8635 8.8693 8.0703 7.712 8.3079 7 8 9 8 8 8 2 2 2 2 2 2 3375.7 1764 2023 1756 2793 3667;3668 3668 2 ASSEGGTAAGAGLDSLHK Unmodified 1627.7802 0.7801774 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 5.2 1.17 2 1 1 1 42.412 42.412 3;4 9.6477E-31 11037 TMT1-5 174.35 145.02 867.51 1303.1 971.9 861.05 1058.6 1101.9 820 1295 1010 859 1086 1062 7 7 7 7 7 7 287430 1765 128 1757 2794;2795;2796;2797;2798 3669;3670;3671;3672;3673;3674;3675 3674 7 ASSFAGYVGMLTGFKPGLFSLTLNER Unmodified 2762.4102 0.41017251 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 1 9 0 1 89.09 89.09 4 6.0356E-05 27104 TMT1-8 54.744 42.547 23.268 52.49 12.266 15.664 0 38.376 22 51 15 15 0 36 1 1 1 1 0 1 6617.5 1766 1714 1758 2799 3676 3676 1 ASSGAGDPLDSK Acetyl (Protein N-term) 1145.52 0.52004654 2972 Q9Y2R0 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes yes 0 1 0 0 0 2 0 1 48.552 48.552 2 0.0022202 14359 TMT1-1 48.741 20.342 77.711 55.523 56.747 51.308 55.986 67.692 73 58 58 51 58 65 1 1 1 1 1 1 7683.1 1767 2972 1759 2800 3677 3677 1 ASSIIDELFQDR Unmodified 1392.6885 0.68850885 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 5.5 0.5 1 1 76.964 76.964 2 1.4622E-43 24666 TMT1-4 218.43 183.2 355.38 382.84 360.6 384.75 367.49 510.79 335 388 372 378 385 489 3 3 3 3 3 3 124530 1768 639 1760 2801;2802 3678;3679;3680 3679 3 ASSLIEEAK Unmodified 946.49713 0.49712625 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.33 1.7 1 1 1 48.644 48.644 2;3 6.6699E-09 13757 TMT1-3 173.73 85.972 5285.6 7656.2 7215 5359 7124.3 6873.9 5002 7644 7338 5419 7272 6639 5 5 5 5 5 5 1212300 1769 3010 1761 2803;2804;2805 3681;3682;3683;3684;3685;3686 3683 6 ASSLIEEAKK Unmodified 1074.5921 0.59208927 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4 2.16 1 1 1 46.683 46.683 3 0.00031806 11340 TMT 1-phospho 103.91 72.623 8433 10361 9747.6 6905 8250.8 10988 7962 10425 9907 6991 8552 10529 4 4 4 4 4 4 809900 1770 3010 1762 2806;2807;2808 3687;3688;3689;3690 3687 4 ASSLISLLK Unmodified 930.57498 0.57498264 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 9 0 1 70.15 70.15 2 0.0009153 19724 TMT1-8 129.1 61.118 169.56 230.59 161.27 106.29 172.06 208.29 160 230 167 109 176 200 1 1 1 1 1 1 18817 1771 1501 1763 2809 3691 3691 1 ASSQVNVEGQSR Unmodified 1260.6058 0.60584185 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 0 2.5 0.5 1 1 28.93 28.93 3 3.7037E-08 6849 TMT1-2 127.17 94.086 77.073 132.53 98.822 71.875 107.63 89.671 73 131 102 73 109 87 2 2 2 2 2 2 26740 1772 188 1764 2810;2811 3692;3693 3693 2 ASSSILIDESEPTTNIQIR Unmodified 2073.059 0.058978027 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 4 0 1 60.578 60.578 3 9.9708E-18 18461 TMT1-3 124.91 117.1 30.687 44.164 34.857 28.96 35.042 37.376 29 44 36 29 36 36 1 1 1 1 1 1 17618 1773 2934 1765 2812 3694 3694 1 ASSTSPVEISEWLDQK Unmodified 1775.8578 0.85775902 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 70.354 70.354 3 3.5688E-18 22014 TMT1-4 144.55 126.84 437.55 608.16 425.69 432.57 524.44 658.75 413 606 447 428 542 632 3 3 3 3 3 3 55181 1774 693 1766 2813;2814 3695;3696;3697 3696 3 ASSTVPVSAAGSANETPEIPDNVGDWLR Acetyl (Protein N-term) 2881.373 0.37299496 2368 Q96B49 TOMM6 Mitochondrial import receptor subunit TOM6 homolog yes yes 0 1 0 0 0 3 0 1 82.002 82.002 3 6.6844E-06 27566 TMT1-2 40.104 29.114 7.511 0 0 0 0 7.462 7 0 0 0 0 7 1 0 0 0 0 1 4305.8 1775 2368 1767 2815 3698 3698 1 ASSVIFGLK Unmodified 920.53312 0.53311783 2610 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 0 9 0 1 61.593 61.593 2 0.0083547 16353 TMT1-8 79.906 38.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1776 2610 1768 2816 3699 3699 1 ASTALSNEQQAR Unmodified 1274.6215 0.62149192 668 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 0 3 0 2 30.131 30.131 2;3 0.00086977 7383 TMT1-2 93.839 73.698 54.158 42.175 59.152 42.256 64.742 68.509 51 44 59 43 66 66 2 2 2 2 2 2 5509.7 1777 668 1769 2817;2818 3700;3701 3701 2 ASTNIQDTEGNTPLHLACDEERVEEAK Unmodified 3026.3887 0.38872138 304 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 0 1 3 0 1 50.972 50.972 4 4.6028E-16 15665 TMT1-2 93.949 82.532 38.143 34.863 52.008 19.974 51.674 21.977 36 36 51 22 51 22 1 1 1 1 1 1 9410.3 1778 304 1770 2819 3702 3702 1 ASTPNGYDNGIIWATWK Unmodified 1892.9057 0.90571227 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 8 0 2 70.969 70.969 2;3 5.0817E-10 21846 TMT1-7 111.22 86.934 231.8 310.72 272.56 164.75 197.67 298.17 219 311 277 169 206 285 2 2 2 2 2 2 35476 1779 439 1771 2820;2821 3703;3704 3703 2 ASVDELFAEIVR Unmodified 1347.7034 0.70343063 1385 P61225 RAP2B Ras-related protein Rap-2b yes yes 0 0 0 0 0 5 0 1 79.897 79.897 2 3.2302E-08 25679 TMT1-4 136.49 101.34 99.034 168.26 164.61 123.24 131.9 197.71 94 167 167 124 138 189 2 2 2 2 2 2 44615 1780 1385 1772 2822 3705;3706 3705 2 ASVDGWFK Unmodified 908.43922 0.43921744 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 0 7 0 1 59.236 59.236 2 0.0097228 17137 TMT1-6 100.15 75.814 566.51 686.79 866.81 513.94 669.81 794.24 536 695 863 529 689 763 2 2 2 2 2 2 73237 1781 501 1773 2823 3707;3708 3707 2 ASVEDADTQSK Unmodified 1149.515 0.51496116 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 2 0 2 35.051 35.051 2;3 1.363E-11 9026 TMT1-1 141.08 91.369 38.039 58.319 49.534 43.928 64.424 45.066 36 58 51 44 65 44 1 1 1 1 1 1 9504.5 1782 1720 1774 2824;2825 3709;3710 3710 2 ASVGCGSEAAR Unmodified 1063.4717 0.47165656 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 3 0 1 25.53 25.53 2 1.337E-05 5589 TMT1-2 123.6 89.41 30.894 28.55 13.349 22.714 28.513 22.638 29 29 15 22 29 22 1 1 1 1 1 1 2465.1 1783 1999 1775 2826 3711 3711 1 ASVGECPAPVPVK Acetyl (N-term) 1351.6806 0.6805867 1330 P56134-3;P56134 ATP5J2 ATP synthase subunit f, mitochondrial yes no 1 0 0 0 0 4 0 1 55.347 55.347 2 0.0019581 16382 TMT1-3 46.606 30.032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1784 1330 1776 2827 3712 3712 1 ASVGQDSPEPR Unmodified 1141.5364 0.53636531 2048 Q6UX71-2;Q6UX71 PLXDC2 Plexin domain-containing protein 2 yes no 0 0 0 0 0 2 0 1 30.088 30.088 2 0.016963 7026 TMT1-1 73.951 56.087 23.368 21.469 21.744 14.689 21.809 15.368 22 22 22 15 22 15 1 1 1 1 1 1 3078.3 1785 2048 1777 2828 3713 3713 1 ASVPIVLEK Unmodified 954.57498 0.57498264 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 0 7 0 1 57.386 57.386 2 0.001858 16435 TMT1-6 111.61 57.199 68.766 93.96 84.865 73.728 53.343 114.67 65 94 87 73 58 109 1 1 1 1 1 1 7624.8 1786 1707 1778 2829 3714 3714 1 ASVPTIQDQASAMQLSQCAK Unmodified 2133.0194 0.019438173 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.2 2.23 1 1 1 2 58.415 58.415 3;4 2.3108E-32 17329 TMT1-5 154.48 145.3 514.64 820.81 633.2 507.02 615.75 732.89 487 814 654 509 635 704 6 6 6 6 6 6 327080 1787 3010 1779 2830;2831;2832;2833;2834 3715;3716;3717;3718;3719;3720 3718 6 ASVPTIQDQASAMQLSQCAK Oxidation (M) 2149.0144 0.014352795 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6 0 1 51.829 51.829 4 7.6564E-07 14851 TMT1-5 82.367 78.099 177.05 266.73 133.4 147.98 135.89 261.56 167 264 145 145 145 249 1 1 1 1 1 1 25732 1788 3010 1779 2835 3721 3721 327 1 ASVQLLVQDSLNPAVK Unmodified 1680.941 0.94103514 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 7.86 0.833 3 2 2 70.374 70.374 2;3;4 1.1988E-66 21618 TMT1-6 236.7 186.49 1503 1271.9 1679.7 1022.6 1501.7 1900.5 1416 1317 1672 1053 1543 1823 10 10 10 10 10 10 1051600 1789 565 1780 2836;2837;2838;2839;2840;2841;2842 3722;3723;3724;3725;3726;3727;3728;3729;3730;3731 3725 10 ASVSQVEADLK Unmodified 1145.5928 0.59281755 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 4 0 1 53.336 53.336 2 0.00011176 15657 TMT1-3 112.7 41.48 46.661 50.282 49.987 43.615 79.631 59.556 44 51 51 44 80 58 1 1 1 1 1 1 13518 1790 1609 1782 2843 3732 3732 1 ASVTVGGEQISAIGR Unmodified 1443.7682 0.76815616 2257 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 0 0 0 0 0 5 0 1 50.836 50.836 2 5.3891E-34 14334 TMT1-4 193.11 175.7 92.588 77.836 62.278 65.441 100.6 89.871 87 80 65 65 102 87 1 1 1 1 1 1 15827 1791 2257 1783 2844 3733 3733 1 ASWSSLSMDEK Unmodified 1239.5442 0.5441528 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 6 0 1 55.751 55.751 2 2.6006E-08 16421 TMT1-5 157.38 132.16 68.711 125.11 67.817 74.459 68.502 129.16 65 123 73 73 73 123 1 1 1 1 1 1 15726 1792 677 1784 2845 3734 3734 1 ASWTSILAK Unmodified 975.53893 0.53893149 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 9 0 1 64.18 64.18 2 0.04091 17366 TMT1-8 65.404 18.337 91.964 131.14 122 61.751 107.55 105.66 87 131 123 65 109 102 1 1 1 1 1 1 10616 1793 2759 1785 2846 3735 3735 1 ASYAVSETIPK Unmodified 1164.6027 0.60265396 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 5 0 1 49.319 49.319 2 3.0589E-07 13736 TMT1-4 107.79 88.517 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1794 2717 1786 2847 3736 3736 1 ASYDDPYKK Unmodified 1085.5029 0.50293991 2443 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 1 5 0 1 38.508 38.508 3 0.029451 9439 TMT1-4 58.978 16.994 129.5 278.73 179.99 160 220.86 207.96 123 273 189 160 225 201 1 1 1 1 1 1 14846 1795 2443 1787 2848 3737 3737 1 ASYDVSDSGQLEHVQPWSV Unmodified 2102.9545 0.95451296 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 4 0 1 64.456 64.456 3 3.3963E-13 19941 TMT1-3 107.75 93.06 61.385 63.535 88.906 49.129 69.923 121.66 58 65 88 51 73 116 2 2 2 2 2 2 23071 1796 1559 1788 2849 3738;3739 3738 2 ASYILMEK Unmodified 953.4892 0.4892041 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 7 0 1 56.404 56.404 2 0.022323 16074 TMT1-6 87.308 44.061 122.61 197.86 144.37 170.77 167.66 189.23 116 196 152 167 174 182 1 1 1 1 1 1 11298 1797 1160 1789 2850 3740 3740 1 ASYLDCIR Unmodified 996.46987 0.46986564 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 5 0 1 48.2 48.2 2 0.0055139 13285 TMT1-4 117.39 77.185 129.56 245.44 198.28 134.46 242.14 140.2 123 242 203 138 242 138 1 1 1 1 1 1 17145 1798 451 1790 2851 3741 3741 1 ASYNNPHR Unmodified 957.44168 0.44167706 1301 P54725;P54725-3;P54725-2 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 0 3 0 1 19.035 19.035 3 0.0012476 3296 TMT1-2 105.25 96.386 15.979 10.448 10.696 11.189 10.453 15.692 15 11 11 11 11 15 1 1 1 1 1 1 1928.1 1799 1301 1791 2852 3742 3742 1 ASYYEILDVPR Acetyl (Protein N-term) 1366.6769 0.67688153 887 P25686-2;P25686 DNAJB2 DnaJ homolog subfamily B member 2 yes no 0 1 0 0 0 3 0 1 76.033 76.033 2 0.001873 25418 TMT1-2 62.303 47.788 0 15.716 14.595 15.525 0 15.99 0 15 15 15 0 15 0 1 1 1 0 1 6487.4 1800 887 1792 2853 3743 3743 1 ATAAESSDGSIK Unmodified 1135.5357 0.5356966 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 4 0 2 35.547 35.547 2;3 6.8165E-10 8560 TMT1-3 154.66 91.245 278.9 376.25 235.68 218.93 281.7 337.35 263 375 249 218 290 324 2 2 2 2 2 2 36732 1801 214 1793 2854;2855 3744;3745 3745 2 ATAAFILANEHNVALFK Unmodified 1828.9836 0.98356866 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 9 0 1 67.548 67.548 3 1.1955E-10 18721 TMT1-8 104.44 78.314 108.33 114.62 89.664 103.72 128.65 105.06 102 116 94 102 131 102 1 1 1 1 1 1 11917 1802 65 1794 2856 3746 3746 1 ATAAPAGAPPQPQDLEFTK Unmodified 1908.9581 0.95814177 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 5 0 1 56.684 56.684 3 3.3314E-11 16608 TMT1-4 85.146 67.657 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1803 851 1795 2857 3747 3747 1 ATAAYEQLK Acetyl (N-term) 1035.5237 0.52367535 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 1 0 0 0 0 3 0 1 55.325 55.325 2 8.5766E-27 17347 TMT1-2 119.17 74.481 475.91 647.95 437.1 385.69 540.07 631.65 449 646 458 386 554 607 2 2 2 2 2 2 110210 1804 2744 1796 2858 3748;3749 3748 2 ATADDELSFK Unmodified 1095.5084 0.50841922 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 3.33 0.943 1 2 51.901 51.901 2;3 6.0828E-05 14911 TMT1-3 123.63 89.759 541.07 884.77 646.68 722.55 387.39 911.04 512 876 679 703 432 865 4 4 4 4 4 4 160470 1805 1464 1797 2859;2860;2861 3750;3751;3752;3753 3751 4 ATADDELSFKR Unmodified 1251.6095 0.60953025 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 1 5 0 1 43.008 43.008 3 0.033875 11231 TMT1-4 52.863 29.012 153.15 198.44 241.48 172.65 167.01 236.15 145 200 242 174 175 226 1 1 1 1 1 1 8755.9 1806 1464 1798 2862 3754 3754 1 ATAEQISSQTGNK Unmodified 1333.6474 0.64737232 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 5 0 1 37.175 37.175 3 2.164E-13 8945 TMT1-4 160.52 106.96 214.99 299.93 222.11 196.5 238.75 277.81 203 299 231 196 246 267 1 1 1 1 1 1 46013 1807 1900 1799 2863 3755 3755 1 ATAEVLNIGK Acetyl (Protein N-term) 1056.5815 0.58152458 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 1 0 0 0 4 0 1 65.03 65.03 2 2.2803E-15 20142 TMT1-3 109.86 75.055 93.014 146.12 113.14 70.326 144.59 112.07 88 145 116 73 145 109 2 2 2 2 2 2 22894 1808 843 1800 2864 3756;3757 3756 2 ATAFPAEVK Unmodified 932.49673 0.49673232 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 6 0 1 47.692 47.692 2 0.036383 13324 TMT1-5 71.451 29.876 68.845 117.92 51.311 90.3 92.143 59.199 65 116 58 87 94 58 1 1 1 1 1 1 16188 1809 1961 1802 2865 3758 3758 1 ATAGDTHLGGEDFDNR Unmodified 1674.7234 0.72339081 618;754 P17066;P48741;P0DMV8;P0DMV9;P0DMV8-2 HSPA6;HSPA7;HSPA1A;HSPA1B Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 3 0.816 1 1 1 37.647 37.647 3 8.4167E-17 10083 TMT1-1 141.06 132.46 231.15 266.64 238.47 260.8 255.02 388.21 218 269 247 256 268 371 4 4 4 4 4 4 76590 1810 754;618 1803 2866;2867;2868 3759;3760;3761;3762 3759 4 ATAPQTQHVSPMR Unmodified 1422.7038 0.70378176 941 P29692;P29692-2;P29692-3;P29692-4 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 6.33 1.25 1 1 1 29.084 29.084 3 0.0016707 5464 TMT1-7 71.879 59.111 39.21 58.518 32.875 53.166 32.83 69.419 37 58 36 51 36 66 2 2 2 2 2 2 4229.9 1811 941 1804 2869;2870;2871 3763;3764;3765 3765 3 ATAPVSFNYYGVVTGPSASK Unmodified 2015 6.5850998E-06 1988 Q5VW32-2;Q5VW32 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 0 8 0 2 64.388 64.388 3;4 1.1901E-17 19254 TMT1-7 120.4 103.03 99.203 192.47 115.76 118.48 133.18 166.76 94 189 123 117 138 160 2 2 2 2 2 2 23200 1812 1988 1805 2872;2873 3766;3767 3767 2 ATAPYNYSYIFK Acetyl (Protein N-term) 1478.7082 0.70818166 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 1 0 0 0 6 0 1 76.477 76.477 2 4.6968E-08 24553 TMT1-5 88.496 59.578 115.29 112.56 184.86 81.94 113.44 120.42 109 116 181 87 116 116 1 1 1 1 1 1 35615 1813 1378 1806 2874 3768 3768 1 ATATPVPPR Acetyl (Protein N-term) 950.51853 0.5185304 816 P20700 LMNB1 Lamin-B1 yes yes 0 1 0 0 0 2 0 2 37.472 37.472 2 4.7321E-05 10042 TMT1-1 61.999 42.437 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1814 816 1807 2875;2876 3769;3770 3770 2 ATATQFVHHALK Unmodified 1322.7095 0.70951906 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 8.5 0.5 1 1 39.999 39.999 4 0.0031267 9538 TMT1-7 66.267 41.413 183.73 316.78 231.33 164.6 220.32 217.57 174 313 239 167 225 210 2 2 2 2 2 2 25007 1815 822 1808 2877;2878 3771;3772 3771 2 ATATQLLQHPFVR Unmodified 1480.815 0.81504677 1665 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 0 9 0 1 51.008 51.008 3 7.6707E-11 12173 TMT1-8 122.34 90.71 84.188 208.63 100.79 94.327 128.02 135.99 80 203 109 94 131 131 1 1 1 1 1 1 23807 1816 1665 1809 2879 3773 3773 1 ATAVMPDGQFK Unmodified 1163.5645 0.56449431 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 6 0 1 50.949 50.949 3 0.00016609 14477 TMT1-5 101.3 53.011 169.35 277.51 156 161.31 226.92 303.73 160 274 167 160 234 291 1 1 1 1 1 1 45855 1817 1606 1810 2880 3774 3774 1 ATAVVDGAFK Unmodified 977.5182 0.51819605 989 P32119;P32119-2 PRDX2 Peroxiredoxin-2 yes no 0 0 0 0 0 6 0 2 51.296 51.296 2;3 4.0416E-05 14631 TMT1-5 128.81 85.299 572.21 576.74 361.87 434.86 488.73 599 538 584 387 426 506 575 2 2 2 2 2 2 179750 1818 989 1811 2881;2882 3775;3776 3775 2 ATCAPQHGAPGPGPADASK Unmodified 1788.8213 0.82133071 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.5 1.12 1 1 1 1 32.212 32.212 3;4 9.0072E-14 6868 TMT1-4 113.86 103.93 963.6 1077.5 522.24 706.63 814.4 1351.9 906 1082 576 689 854 1290 5 5 5 5 5 5 122970 1819 831 1812 2883;2884;2885;2886 3777;3778;3779;3780;3781 3778 5 ATCIGNNSAAAVSMLK Unmodified 1606.7807 0.78071145 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 8 0 1 56.832 56.832 3 1.6344E-08 16312 TMT1-7 105.28 76.98 92.342 100.9 84.062 79.763 141.77 181.44 87 102 87 80 145 174 1 1 1 1 1 1 15543 1820 893 1813 2887 3782 3782 1 ATCPQHLK Unmodified 953.47529 0.47528537 995 P32942 ICAM3 Intercellular adhesion molecule 3 yes yes 0 0 0 0 0 6 0 1 29.424 29.424 3 0.0029133 6057 TMT1-5 93.195 59.023 91.871 153.55 118.54 109.24 150.68 95.904 87 152 123 109 152 94 1 1 1 1 1 1 7953.8 1821 995 1814 2888 3783 3783 1 ATDAEADVASLNR Unmodified 1331.6317 0.63172225 593;551;552 P09493-3;P09493-10;P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 0 2 0 1 45.318 45.318 3 9.0596E-22 13101 TMT1-1 183.08 153.55 84.282 161.4 125.08 122.91 216.77 163.31 80 159 130 123 218 159 2 2 2 2 2 2 47604 + 1822 593;551;552 1815 2889 3784;3785 3785 2 ATDAEADVASLNRR Unmodified 1487.7328 0.73283328 593;551;552 P09493-3;P09493-10;P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 1 3 0 1 40.029 40.029 3 0.0047886 11316 TMT1-2 63.989 40.138 53.747 94.996 83.488 104.95 82.821 97.841 51 94 87 102 87 94 1 1 1 1 1 1 11202 + 1823 593;551;552 1816 2890 3786 3786 1 ATDAQLCLESSPK Unmodified 1418.6711 0.67114423 1229 P50851-2;P50851;Q8NFP9 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 0 5 0 1 48.855 48.855 2 5.1474E-11 13554 TMT1-4 110.31 78.875 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1824 1229 1817 2891 3787 3787 1 ATDCVGHDVVTLLR Unmodified 1554.7824 0.78242601 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5 0 1 54.137 54.137 3 1.121E-07 15616 TMT1-4 112.02 88.036 76.841 115.7 152 115.34 126.8 143.49 73 116 152 116 131 138 1 1 1 1 1 1 55870 1825 787 1818 2892 3788 3788 1 ATDELATK Acetyl (N-term) 889.43928 0.43927702 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 1 0 0 0 0 2 0 1 46.768 46.768 2 0.0014827 13605 TMT1-1 77.058 40.037 91.749 220.13 82.696 119.92 103.04 159.09 87 214 94 116 109 152 1 1 1 1 1 1 40445 1826 2376 1819 2893 3789 3789 1 ATDFDVLSYK Unmodified 1157.5605 0.56045479 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 0 6 0 1 63.737 63.737 3 0.002263 19545 TMT1-5 81.865 44.706 115.75 113.85 105.93 103.19 105.64 105.72 109 116 109 102 109 102 1 1 1 1 1 1 11860 1827 2744 1820 2894 3790 3790 1 ATDFDVLSYKK Unmodified 1285.6554 0.65541781 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 1 7 0 1 57.126 57.126 3 0.0022193 16357 TMT1-6 82.85 57.529 202.75 356.73 247.14 239.69 304 330.31 192 352 259 238 312 318 1 1 1 1 1 1 23768 1828 2744 1821 2895 3791 3791 1 ATDFVADR Unmodified 893.4243 0.42429566 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 40.356 40.356 2 0.00712 11442 TMT1-2 103.56 89.356 717.57 905.68 720.86 612.23 729.6 992.95 677 908 745 612 757 951 2 2 2 2 2 2 220640 1829 1164 1822 2896;2897 3792;3793 3793 2 ATDFVVPGPGK Unmodified 1086.571 0.5709599 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 6 0 1 54.117 54.117 2 0.00019366 15742 TMT1-5 108.67 77.594 146.13 231.63 130.18 101.04 142.67 127.05 138 229 138 102 145 123 1 1 1 1 1 1 25641 1830 307 1823 2898 3794 3794 1 ATDVFNSK Acetyl (Protein N-term) 922.43961 0.43961137 353 O95379-3 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes yes 0 1 0 0 0 4 0 1 55.1 55.1 2 0.00027879 16264 TMT1-3 88.942 27.981 61.232 118.15 68.286 74.14 83.944 106.34 58 116 73 73 87 102 1 1 1 1 1 1 16324 1831 353 1824 2899 3795 3795 1 ATEEFIIR Acetyl (Protein N-term) 1019.5288 0.52876073 1796 Q14764 MVP Major vault protein yes yes 0 1 0 0 0 2 0 1 62.496 62.496 2 1.5428E-08 19876 TMT1-1 116.54 84.072 48.053 28.43 14.967 22.745 21.717 7.2815 45 30 15 22 22 7 2 2 1 2 2 1 11497 1832 1796 1825 2900 3796;3797 3797 2 ATEICVGDPK Unmodified 1088.5172 0.51720977 818 P20718 GZMH Granzyme H yes yes 0 0 0 0 0 4 0 1 45.402 45.402 2 5.8129E-06 12460 TMT1-3 121.5 68.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833 818 1826 2901 3798 3798 1 ATENDIANFFSPLNPIR Unmodified 1917.9585 0.95847612 982 P31942-2;P31942;P31942-3;P31942-6;P31942-5;P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 0 7.33 0.471 2 1 79.923 79.923 2;3 1.4511E-26 25276 TMT1-6 159.79 153.47 215.47 245.15 187.36 175.84 226.87 224.85 203 247 195 175 232 217 4 4 4 4 4 4 55906 1834 982 1827 2902;2903;2904 3799;3800;3801;3802 3799 4 ATENDIYNFFSPLNPMR Unmodified 2027.9411 0.9411115 1325 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 0 0 8 0 1 81.66 81.66 3 0.00038057 26069 TMT1-7 69.188 43.042 61.448 79.9 64.39 43.057 63.679 98.387 58 80 66 44 66 94 2 2 2 2 2 2 10679 1835 1325 1828 2905 3803;3804 3804 2 ATENDIYNFFSPLNPVR Unmodified 1995.969 0.96904081 983;1271 P31943;P52597 HNRNPH1;HNRNPF Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed no no 0 0 0 0 0 7.5 0.5 2 2 79.651 79.651 2;3 4.7273E-19 25237 TMT1-7 136.63 108.08 199.88 314.75 223.83 188.15 270.21 286.51 189 312 233 189 276 276 4 4 4 4 4 4 182560 1836 983;1271 1829 2906;2907;2908;2909 3805;3806;3807;3808 3808 4 ATEPVATSNPAGDPVGSTR Unmodified 1825.8806 0.88061973 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 3 0 1 40.627 40.627 3 1.9294E-15 11558 TMT1-2 102.39 84.473 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1837 1916 1830 2910 3809 3809 1 ATEPVIAFYEK Unmodified 1266.6496 0.64960415 398 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 61.825 61.825 3 2.8936E-05 18768 TMT1-5 110.86 71.709 269.84 310.58 191.2 213.9 225.07 256.88 254 312 204 210 233 247 2 2 2 2 2 2 33629 1838 398 1831 2911;2912 3810;3811 3811 2 ATETVELHK Acetyl (Protein N-term) 1068.5451 0.54513908 1515 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 1 0 0 0 2 0 1 43.469 43.469 2 2.306E-14 12308 TMT1-1 83.005 29.835 84.824 92.756 92.135 80.37 83.951 97.808 80 94 94 80 87 94 1 1 1 1 1 1 24344 1839 1515 1832 2913 3812 3812 1 ATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNR Unmodified 4036.7857 0.78569685 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 8 0 1 82.737 82.737 4 1.3429E-07 26425 TMT1-7 59.017 26.9 0 23.05 21.411 22.667 5.4807 23.296 0 22 22 22 7 22 0 1 1 1 1 1 8038.9 + 1840 506 1833 2914 3813 3813 1 ATFAGLYSLDVGEEGDQAIAEALAAPSR Unmodified 2821.377 0.3770177 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 5.33 0.471 2 1 86.151 86.151 3;4 4.4562E-29 28142 TMT1-4 117.03 96.59 69.048 72.079 56.063 45.349 63.024 114.4 65 73 58 44 66 109 2 2 2 1 2 2 20374 1841 1160 1834 2915;2916;2917 3814;3815;3816 3814 3 ATFDAISK Unmodified 851.43888 0.43888309 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 6 0 1 49.568 49.568 2 0.0027842 13942 TMT1-5 134.91 80.502 258.79 389.4 358.1 297.33 374.25 461.56 245 388 366 298 386 443 1 1 1 1 1 1 45537 1842 727 1835 2918 3817 3817 1 ATFDEEEGRDEYDEVAMPV Unmodified 2200.9107 0.91065881 440 P02730-2;P02730 SLC4A1 Band 3 anion transport protein yes no 0 0 0 0 1 2 0 1 64.916 64.916 3 0.0025516 20668 TMT1-1 53.278 42.644 23.337 28.938 20.617 29.933 28.438 15.179 22 29 22 29 29 15 1 1 1 1 1 1 2327.6 1843 440 1836 2919 3818 3818 1 ATFDISLVVPK Unmodified 1188.6754 0.67542497 1324 P55786;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 8 0 1 72.583 72.583 3 0.00030509 22431 TMT1-7 97.456 61.945 139.33 119.71 105.87 93.916 133.79 181.67 131 123 109 94 138 174 2 2 2 2 2 2 14318 1844 1324 1837 2920 3819;3820 3819 2 ATFISVQLK Acetyl (N-term) 1047.5964 0.59644637 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 1 0 0 0 0 7 0 1 75.408 75.408 2 0.016723 23499 TMT1-6 78.496 47.124 23.14 52.133 34.113 35.79 81.054 28.601 22 51 36 36 80 29 1 1 1 1 1 1 18287 1845 2267 1838 2921 3821 3821 1 ATFMVGSYGPRPEEYEFLTPVEEAPK Oxidation (M) 2959.395 0.39497595 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 1 0 1 5 0 1 68.718 68.718 4 3.8953E-05 21343 TMT1-4 58.92 56.754 54.093 57.103 57.504 34.869 55.936 91.146 51 58 58 36 58 87 1 1 1 1 1 1 12639 1846 1269 1839 2922 3822 3822 208 1 ATFMVGSYGPRPEEYEFLTPVEEAPK Unmodified 2943.4001 0.40006133 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 5.5 0.5 1 1 71.486 71.486 4 2.4683E-22 22530 TMT1-5 113.31 94.908 337.3 546.62 374.73 334.93 414.37 583 319 541 392 334 430 558 3 3 3 3 3 3 179960 1847 1269 1839 2923;2924 3823;3824;3825 3824 3 ATFYAAEIMCGLQFLHSK Unmodified 2086.0016 0.0016032645 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 9 0 1 83.162 83.162 3 6.7232E-05 24740 TMT1-8 64.298 47.079 23.382 29.062 13.015 30.387 28.417 15.179 22 29 15 29 29 15 1 1 1 1 1 1 4290.4 1848 1596 1840 2925 3826 3826 1 ATFYGEQVDYYK Unmodified 1482.6667 0.66671078 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 2 57.014 57.014 2;3 0.00057892 16705 TMT1-4 83.137 61.58 130.22 182.51 141.25 114.75 192.24 218.37 123 182 146 116 196 210 2 2 2 2 2 2 18851 1849 1139 1841 2926;2927 3827;3828 3827 2 ATFYLLIGNANAAKPDLDK Unmodified 2034.0786 0.078591257 326 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 1 9 0 1 70.245 70.245 4 2.0478E-08 19773 TMT1-8 82.482 58.683 77.505 109.99 45.212 66.898 77.241 98 73 109 51 65 80 94 1 1 1 1 1 1 13618 1850 326 1842 2928 3829 3829 1 ATFYTPQNPSSLAPAPLRPLEDR Unmodified 2540.3023 0.30233662 3015 Q9Y4H4 GPSM3 G-protein-signaling modulator 3 yes yes 0 0 0 0 1 7 0 1 62.529 62.529 3 1.471E-09 18472 TMT1-6 76.533 67.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1851 3015 1843 2929 3830 3830 1 ATGAAAAEAK Unmodified 859.43995 0.43994572 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 4 0 1 31.239 31.239 3 0.0094214 6853 TMT1-3 64.73 33.357 108.64 76.62 70.222 81.238 107.2 89.683 102 80 73 80 109 87 1 1 1 1 1 1 4918.2 1852 2219 1844 2930 3831 3831 1 ATGAEQEAQR Unmodified 1059.4945 0.49450049 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 2 0 1 22.851 22.851 2 0.0018052 4205 TMT1-1 101.38 72.294 7.3462 15.217 14.803 10.717 22.52 0 7 15 15 11 22 0 1 1 1 1 1 0 1213.9 1853 2753 1845 2931 3832 3832 1 ATGANATPLDFPSK Acetyl (Protein N-term) 1430.7042 0.70415892 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 yes no 0 1 0 0 0 5 0 1 64.341 64.341 3 0.00069579 19557 TMT1-4 47.201 17.513 30.703 51.763 25.756 53.014 63.494 60.016 29 51 29 51 65 58 1 1 1 1 1 1 10018 1854 1866 1846 2932 3833 3833 1 ATGDWFYDQK Unmodified 1229.5353 0.53530267 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 5.5 0.5 1 1 57.743 57.743 2;3 7.4742E-05 17013 TMT1-4 120.09 74.929 238.3 303.97 268.08 249.39 244.91 271.24 225 305 276 247 254 261 2 2 2 2 2 2 27550 1855 2378 1847 2933;2934 3834;3835 3834 2 ATGEADVEFVTHEDAVAAMSK Unmodified 2176.9947 0.99466321 982 P31942-2;P31942;P31942-3;P31942-6;P31942-5;P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 0 4 0 1 59.34 59.34 4 0.00022649 17911 TMT1-3 57.496 15.187 53.617 110.82 91.932 64.121 76.819 114 51 109 94 65 80 109 1 1 1 1 1 1 7936.5 1856 982 1848 2935 3836 3836 1 ATGHEFAVK Unmodified 958.48723 0.48723027 726 P15735;P15735-2 PHKG2 Phosphorylase b kinase gamma catalytic chain, liver/testis isoform yes no 0 0 0 0 0 6 0 1 35.888 35.888 3 0.0085423 8551 TMT1-5 68.371 36.61 84.07 145.7 174.03 113.89 134.2 143.28 80 145 174 116 138 138 1 1 1 1 1 1 5118 1857 726 1849 2936 3837 3837 1 ATGHSGGGCISQGR Unmodified 1343.6 0.60004497 2666 Q9HA64 FN3KRP Ketosamine-3-kinase yes yes 0 0 0 0 0 8 0 1 19.651 19.651 3 1.7881E-05 3377 TMT1-7 94.781 91.914 1.0448 2.0068 3.0335 1.9492 2.9782 2.047 1 2 3 2 3 2 1 1 1 1 1 1 604.08 1858 2666 1850 2937 3838 3838 1 ATGIDLENIVYYK Unmodified 1497.7715 0.7715102 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 6 0 1 72.283 72.283 3 2.149E-06 22927 TMT1-5 91.914 69.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1859 2256 1851 2938 3839 3839 1 ATGPPVSELITK Unmodified 1211.6762 0.67615325 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 0 6 0 1 57.024 57.024 3 1.199E-07 16869 TMT1-5 120.03 90.226 331.14 368.47 299.37 323.98 363.65 429.88 312 372 312 319 376 413 2 2 2 2 2 2 24426 1860 743 1852 2939 3840;3841 3840 2 ATGTSSGANSEESTAAEFCR Unmodified 2031.844 0.84397623 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 2 0 1 40.045 40.045 3 3.594E-52 10988 TMT1-1 192.6 157.67 38.29 43.906 19.64 30.001 27.922 30.117 36 44 22 29 29 29 1 1 1 1 1 1 15075 1861 1724 1853 2940 3842 3842 1 ATGYPLAYVAAK Unmodified 1223.655 0.65502388 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 59.274 59.274 2 7.9854E-07 17278 TMT1-7 117.02 74.202 23.162 36.005 44.084 27.987 57.572 52.723 22 36 44 29 58 51 1 1 1 1 1 1 7124.7 1862 917 1854 2941 3843 3843 1 ATHDGAPELGAGGTR Unmodified 1408.6695 0.66950474 2570 Q9BXW7-2;Q9BXW7 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 0 0 0 2 0 1 29.473 29.473 3 0.0047635 6794 TMT1-1 42.314 40.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1863 2570 1855 2942 3844 3844 1 ATIAGGGVIPHIHK Unmodified 1369.783 0.78301836 611 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 0 6.75 3.34 1 1 2 44.991 44.991 3;4 1.1423E-14 10942 TMT 1-phospho 131.13 85.407 1631 2629.7 1919.8 1999.4 2384.1 2981.8 1543 2605 2010 1975 2465 2861 6 6 6 6 6 6 268890 1864 611 1856 2943;2944;2945;2946 3845;3846;3847;3848;3849;3850 3845 6 ATIGADFLTK Unmodified 1035.5601 0.56006086 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 7 0 1 61.272 61.272 2 1.7293E-06 17997 TMT1-6 161.27 130.7 664.95 1623.6 1201.3 1083.6 1165.8 1398.4 634 1587 1248 1077 1208 1343 2 2 2 2 2 2 152890 1865 1237 1857 2947 3851;3852 3852 2 ATIGVDFALK Unmodified 1033.5808 0.5807963 1734;1341 Q13637;P57729 RAB32;RAB38 Ras-related protein Rab-32;Ras-related protein Rab-38 no no 0 0 0 0 0 7 0 1 64.48 64.48 2 0.00058933 19193 TMT1-6 112.75 80.527 100.18 77.56 48.1 43.166 109.47 74.694 94 80 51 44 109 73 1 1 1 1 1 1 15292 1866 1734;1341 1858 2948 3853 3853 1 ATIISEQQAK Unmodified 1087.5873 0.58733824 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 6 0 1 42.331 42.331 2 3.6101E-05 11117 TMT1-5 148.94 97.878 61.338 94.703 70.404 58.156 55.378 76.238 58 94 73 58 58 73 1 1 1 1 1 1 7135 1867 1093;1253 1859 2949 3854 3854 1 ATILCTSYVQFK Unmodified 1429.7275 0.72753689 1016 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 0 9 0 1 64.833 64.833 3 7.4499E-08 17646 TMT1-8 122.7 88.809 84.289 146.31 136.7 76.603 142.98 150.49 80 145 138 80 145 145 1 1 1 1 1 1 16954 1868 1016 1860 2950 3855 3855 1 ATILDLSCNK Unmodified 1133.5751 0.575059 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 7 0 1 57.789 57.789 2 1.1756E-09 16570 TMT1-6 175.73 100.35 153.34 229.2 182.87 183.78 167.87 226.53 145 228 190 181 176 217 1 1 1 1 1 1 31028 1869 2362 1861 2951 3856 3856 1 ATISDEEIER Unmodified 1161.5513 0.55134667 2945 Q9UQN3-2;Q9UQN3 CHMP2B Charged multivesicular body protein 2b yes no 0 0 0 0 0 2 0 1 40.319 40.319 2 0.00038546 11090 TMT1-1 120.09 77.007 23.113 67.168 25.911 29.638 27.389 46.122 22 65 29 29 29 44 1 1 1 1 1 1 4532.1 1870 2945 1862 2952 3857 3857 1 ATISNDGATILK Unmodified 1202.6507 0.65066678 2496 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 6 0 1 51.115 51.115 3 7.0483E-09 14557 TMT1-5 134.75 113.88 210.08 162.35 261.05 261.26 216.84 311.48 198 170 262 257 229 298 1 1 1 1 1 1 47075 1871 2496 1863 2953 3858 3858 1 ATLEEAR Unmodified 788.40283 0.40283194 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 2 0 1 31.014 31.014 2 0.0071249 7402 TMT1-1 130 58.623 77.119 132.66 90.867 55.955 107.56 113.12 73 131 94 58 109 109 1 1 1 1 1 1 11321 1872 1324 1864 2954 3859 3859 1 ATLENITNLRPVGEDFR Unmodified 1944.0065 0.0064889465 2768 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 0 1 6 0 1 60.235 60.235 3 0.00072451 18180 TMT1-5 68.525 51.156 99.153 152.4 158.05 121.92 164.74 126.42 94 152 160 123 167 123 1 1 1 1 1 1 33488 1873 2768 1865 2955 3860 3860 1 ATLEQAHQALEEEK Unmodified 1595.7791 0.77911477 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 3 0 1 47.334 47.334 3 2.8944E-10 14181 TMT1-2 119.32 95.474 77.432 117.35 51.284 90.726 69.586 75.832 73 116 58 87 73 73 1 1 1 1 1 1 11052 1874 1564 1866 2956 3861 3861 1 ATLLEDQQDPSPSS Unmodified 1486.6787 0.67873203 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 2 0 1 54.568 54.568 3 0.0074412 16713 TMT1-1 40.025 27.257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1875 2687 1868 2957 3862 3862 1 ATLPDADK Unmodified 829.41815 0.41814765 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 4 0 1 41.248 41.248 2 0.00095645 10817 TMT1-3 93.551 0.62625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1876 672 1869 2958 3863 3863 1 ATLPDADKER Unmodified 1114.5619 0.56185177 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 2.8 1.17 1 1 1 2 35.751 35.751 2;3 3.5065E-05 8596 TMT1-3 139.32 86.834 4358.7 6059.8 6011.3 4248.4 5187 6838.6 4124 6066 6087 4304 5370 6554 8 8 8 8 8 8 1307200 1877 672 1870 2959;2960;2961;2962;2963 3864;3865;3866;3867;3868;3869;3870;3871 3869 8 ATLPSPDKLPGFK Unmodified 1369.7606 0.76055158 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 8.67 0.471 1 2 57.984 57.984 3;4 2.8149E-09 14894 TMT1-8 112.44 67.18 707.27 1046 708.6 699.72 707.65 1088.4 668 1039 745 691 743 1040 3 3 3 3 3 3 78650 1878 845 1871 2964;2965;2966 3872;3873;3874 3873 3 ATLQAALCLENFSSQVVER Unmodified 2135.0681 0.068102925 1351 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 7.5 0.5 1 1 76.774 76.774 3 1.3328E-30 24080 TMT1-6 145.99 113.06 182.37 204.71 193.73 139.61 157.25 199.12 172 207 197 141 163 191 5 5 5 5 5 5 63243 1879 1351 1872 2967;2968 3875;3876;3877;3878;3879 3876 5 ATLQALLEVVASDDGDVLDSFQTSPSTESLK Unmodified 3235.5984 0.59836302 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 6 0 1 100.71 100.71 4 7.953E-09 33414 TMT1-5 66.879 55.672 7.4363 11.151 3.0995 11.718 6.3873 11.544 7 11 4 11 7 11 1 1 1 1 1 1 1182.3 1880 1530 1873 2969 3880 3880 1 ATLTQMLNVIFAR Unmodified 1476.8123 0.81226958 3053 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes yes 0 0 0 0 0 9 0 1 89.833 89.833 2 0.026009 27410 TMT1-8 57.802 30.687 23.3 36.39 20.517 22.129 36.916 22.399 22 36 22 22 37 22 1 1 1 1 1 1 2569.2 1881 3053 1874 2970 3881 3881 1 ATLVCLISDFYPGAVTVAWK Unmodified 2210.1446 0.14456233 22;620 P0DOX8;B9A064;P0CG04;P0DOY3;P0DOY2 IGLL5;IGLC1 Immunoglobulin lambda-like polypeptide 5;Ig lambda-1 chain C regions no no 0 0 0 0 0 9 0 2 97.958 97.958 3;4 5.7065E-09 30320 TMT1-8 78.917 59.339 84.836 108.98 76.337 73.113 113.04 143.88 80 109 80 73 116 138 2 2 2 2 2 2 48399 1882 22;620 1875 2971;2972 3882;3883 3883 2 ATLVLNSLQDFQPELFGLPSYE Unmodified 2480.2475 0.24750708 1624 Q08623;Q08623-4;Q08623-2 HDHD1 Pseudouridine-5'-phosphatase yes no 0 0 0 0 0 7 0 1 105.72 105.72 3 1.2425E-09 33630 TMT1-6 89.668 81.278 0 5.2348 5.0959 4.297 5.8974 5.2755 0 5 5 4 6 5 0 1 1 1 2 1 4718.1 1883 1624 1876 2973 3884;3885 3884 2 ATLWYVPLSLK Unmodified 1289.7384 0.73835958 42 O00154-4;O00154-2;O00154-3;O00154-6;O00154-5;O00154-7;O00154 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 0 9 0 1 78.516 78.516 3 0.0048523 22942 TMT1-8 63.408 41.322 99.336 152.91 126.84 117.41 96.891 128.35 94 152 131 116 102 123 2 2 2 2 2 2 21831 1884 42 1877 2974 3886;3887 3886 2 ATLYVTAIEDR Unmodified 1250.6507 0.65066678 2497 Q99873-2;Q99873-3;Q99873 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 0 4 0 1 56.415 56.415 2 0.00085653 16799 TMT1-3 101.3 73.992 115.75 152.7 72.873 88.487 120.21 127.69 109 152 80 87 123 123 1 1 1 1 1 1 15913 1885 2497 1878 2975 3888 3888 1 ATMEAYSR Unmodified 927.41202 0.41201641 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 3 0 1 33.966 33.966 2 0.016047 8908 TMT1-2 91.853 63.747 54.397 42.838 18.547 54.153 25.748 61.093 51 44 22 51 29 58 1 1 1 1 1 1 3957.7 1886 804 1879 2976 3889 3889 1 ATNDEIFSILK Unmodified 1249.6554 0.65541781 1631 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 0 6 0 1 70.283 70.283 3 0.00077075 22144 TMT1-5 62.89 32.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1887 1631 1880 2977 3890 3890 1 ATNDSVVADK Unmodified 1018.4931 0.49310351 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 0 2.5 0.5 1 1 37.779 37.779 2;3 0.00073584 10164 TMT1-1 108.35 76.976 168.64 209.51 153.19 146.15 170.41 142.25 159 210 160 145 174 138 2 2 2 2 2 2 14864 1888 1069 1881 2978;2979 3891;3892 3891 2 ATNIEQIFR Acetyl (Protein N-term) 1132.5877 0.58767259 780 P18583-8;P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9 SON Protein SON yes no 0 1 0 0 0 3.5 0.5 1 1 71.31 71.31 2 0.0012061 22633 TMT1-3 75.692 40.884 15.936 14.647 14.243 23.084 6.0112 7.2905 15 15 15 22 7 7 1 1 1 1 1 1 3303.4 1889 780 1882 2980;2981 3893;3894 3894 2 ATNIEVLSNTFQFTNEAR Unmodified 2054.0069 0.006882877 287 O75534-2;O75534;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 0 6 0 1 69.178 69.178 3 0.0073506 21692 TMT1-5 49.188 28.525 23.33 21.361 28.337 36.844 43.312 29.678 22 22 29 36 44 29 1 1 1 1 1 1 4744.6 1890 287 1883 2982 3895 3895 1 ATNYNAGDR Unmodified 980.43117 0.43117195 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 3 1.29 1 1 2 1 1 25.008 25.008 2 1.3582E-05 5223 TMT1-2 154.85 128.39 1496.5 2474.8 1921.8 1278.9 1926.1 1384.1 1417 2451 1973 1308 1943 1350 9 9 9 9 9 9 476530 1891 1397 1884 2983;2984;2985;2986;2987;2988 3896;3897;3898;3899;3900;3901;3902;3903;3904;3905 3900 10 ATPEQYQILK Unmodified 1189.6343 0.63428844 702 P14324-2;P14324 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 0 6 0 1 51.579 51.579 3 0.00049782 14766 TMT1-5 98.943 47.215 207.47 274.53 244.14 174.1 197.52 320.56 196 275 249 176 207 306 1 1 1 1 1 1 29363 1892 702 1885 2989 3906 3906 1 ATPGNLGSSVLASK Acetyl (Protein N-term) 1342.7092 0.70924429 1152 P48426 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha yes yes 0 1 0 0 0 5.33 0.471 2 1 62.596 62.596 2 2.3254E-10 19120 TMT1-5 119.45 91.28 115.74 106.25 115.03 79.054 81.336 175.7 109 109 116 80 87 167 1 1 1 1 1 1 24476 1893 1152 1886 2990;2991;2992 3907;3908;3909 3909 3 ATPPQIVNGDQYCGDYELFVEAVEQNTLQEFLK Unmodified 3814.8036 0.80362155 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 0 6 0 1 101.04 101.04 4 8.8188E-05 33483 TMT1-5 49.312 44.868 7.3761 19.618 6.0406 7.1641 6.7432 7.2696 7 19 7 7 7 7 1 1 1 1 1 1 1978.3 1894 2626 1887 2993 3910 3910 1 ATPSVSVSK Unmodified 874.476 0.47599688 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 6 0 1 39.993 39.993 2 0.001252 10207 TMT1-5 122.13 25.804 99.847 131.67 58.97 66.383 61.01 114.45 94 131 65 65 65 109 1 1 1 1 1 1 8380.9 1895 1229 1888 2994 3911 3911 1 ATQALVLAPTR Unmodified 1139.6663 0.66625727 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 0 7.5 0.5 1 1 48.47 48.47 2 0.0001516 12878 TMT1-6 110.74 71.73 214.87 274.78 263.01 210.89 215.77 288.06 203 276 268 211 225 276 2 2 2 2 2 2 47823 1896 1358 1889 2995;2996 3912;3913 3912 2 ATQASQEY Unmodified 896.38758 0.3875758 732 P16104 H2AFX Histone H2AX yes yes 0 0 0 0 0 2 0 1 34.226 34.226 2 0.0077636 8678 TMT1-1 102.72 85.333 38.277 27.682 35.462 36.735 26.549 61.07 36 29 36 36 29 58 1 1 1 1 1 1 6954.8 1897 732 1890 2997 3914 3914 1 ATQCEDLLSQAK Unmodified 1362.6449 0.64492948 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 49.385 49.385 3 0.00059713 14035 TMT1-3 63.662 35.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1898 2911 1891 2998 3915 3915 1 ATQLLEGLVQELQK Unmodified 1568.8774 0.87737225 1253 P51692 STAT5B Signal transducer and activator of transcription 5B yes yes 0 0 0 0 0 7.5 0.5 1 1 87.022 87.022 3 5.8405E-19 28013 TMT1-6 161.49 102.82 122.7 174.36 149.69 107.24 158.34 119.14 116 174 153 109 160 116 3 3 3 3 3 3 32134 1899 1253 1892 2999;3000 3916;3917;3918 3917 3 ATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIK Unmodified 3839.853 0.85301458 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 8 0 2 91.882 91.882 4;5 1.1028E-07 29799 TMT1-7 55.059 45.515 54.051 65.622 57.273 28.585 42.08 76.617 51 66 58 30 44 73 2 2 2 2 2 2 6576.8 1900 851 1893 3001;3002 3919;3920 3920 2 ATQQQHDFTLTQTADGR Unmodified 1916.8977 0.89766678 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 4 0 1 37.327 37.327 3 1.3026E-07 9315 TMT1-3 98.633 72.198 30.617 59.079 34.006 28.001 88.741 28.382 29 58 36 29 87 29 1 1 1 1 1 1 11985 1901 1507 1894 3003 3921 3921 1 ATSFATVVK Unmodified 922.51238 0.51238239 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 8 0 1 49.87 49.87 2 0.0037514 13554 TMT1-7 69.716 23.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1902 2935 1895 3004 3922 3922 1 ATSFLLALEPELEAR Unmodified 1658.8879 0.88793694 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 81.571 81.571 3 1.4171E-10 26472 TMT1-5 119.77 85.005 124.08 128.72 137.23 108.17 148.3 197.24 117 131 139 109 153 189 3 3 3 3 3 3 77712 1903 478 1896 3005;3006 3923;3924;3925 3924 3 ATSHVGEIEQELALAR Unmodified 1722.8901 0.89006221 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 3 0 1 54.178 54.178 3 2.3257E-05 16952 TMT1-2 84.266 52.626 46.739 42.942 43.187 36.127 34.419 45.922 44 44 44 36 36 44 1 1 1 1 1 1 8549.3 1904 965 1897 3007 3926 3926 1 ATSITVTGSGSCR Unmodified 1295.614 0.6139637 1750 Q14118 DAG1 Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan yes yes 0 0 0 0 0 6 0 1 35.645 35.645 2 0.017472 8491 TMT1-5 65.395 38.297 7.2678 22.554 21.759 14.698 21.296 30.306 7 22 22 15 22 29 1 1 1 1 1 1 3126.1 1905 1750 1898 3008 3927 3927 1 ATSNVFAMFDQSQIQEFK Unmodified 2089.9779 0.97789093 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 0 7.25 0.968 2 3 2 1 78.698 78.698 3;4 3.2121E-43 24832 TMT1-7 195.92 174.39 1308.3 1940.3 1557.3 1166.7 1551.2 1941.7 1237 1931 1601 1179 1598 1863 14 14 14 14 14 14 585320 1906 115;879 1899 3009;3010;3011;3012;3013;3014;3015;3016 3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941 3940 14 ATSNVFAMFDQSQIQEFK Oxidation (M) 2105.9728 0.97280556 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 1 0 0 7.5 0.5 1 1 71.051 71.051 3 2.4279E-10 21876 TMT1-7 114.4 101.46 176.6 232.02 238.23 149.07 210.48 311.66 167 233 240 153 218 298 2 2 2 2 2 2 64947 1907 115;879 1899 3017;3018 3942;3943 3943 14 2 ATSSSSGSLSATGR Unmodified 1267.6004 0.60042213 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 5 0 1 28.164 28.164 2 9.1839E-10 5378 TMT1-4 123.26 99.225 30.882 20.962 21.748 14.417 36.224 22.418 29 22 22 15 36 22 1 1 1 1 1 1 4073.9 1908 1577 1900 3019 3944 3944 1 ATSTATSGFAGAIGQK Unmodified 1466.7365 0.73652168 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 7.5 0.5 1 1 49.958 49.958 3 1.1961E-23 13524 TMT1-6 172.57 145.95 252.71 345.51 334.65 276.38 342.03 392.12 239 346 341 277 352 377 2 2 2 2 2 2 60772 1909 1250 1901 3020;3021 3945;3946 3945 2 ATTAALLLEAQAATGFLVDPVR Unmodified 2227.2212 0.22123275 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 3 92.929 92.929 2;3;4 1.1081E-13 30135 TMT1-7 103.4 88.788 7.4361 60.615 35.626 36.541 43.11 60.598 7 58 37 36 44 58 1 5 3 3 3 5 26097 1910 1833 1902 3022;3023;3024 3947;3948;3949;3950;3951 3947 5 ATTADGSSILDR Unmodified 1205.5888 0.58879481 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 2.5 0.5 1 1 42.127 42.127 2 2.1455E-11 12129 TMT1-2 166.86 111.88 130.37 150.54 143.16 90.686 187.36 149.22 123 152 145 94 188 145 2 2 2 2 2 2 27805 1911 2532 1903 3025;3026 3952;3953 3953 2 ATTLSNAVSSLASTGLSLTK Unmodified 1921.0368 0.036786022 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 0 9 0 1 79.241 79.241 3 6.634E-25 23267 TMT1-8 131.54 100.31 46.636 65.322 41.457 44.829 42.139 53.164 44 65 44 44 44 51 1 1 1 1 1 1 12246 1912 1710 1904 3027 3954 3954 1 ATTPADGEEPAPEAEALAAAR Unmodified 2036.9651 0.96507764 2450 Q96S44 TP53RK TP53-regulating kinase yes yes 0 0 0 0 0 2 0 1 52.099 52.099 3 2.4856E-08 15747 TMT1-1 90.968 73.051 30.753 28.16 37.241 21.294 28.322 30.106 29 29 37 22 29 29 1 1 1 1 1 1 5849.4 1913 2450 1905 3028 3955 3955 1 ATVEDEK Unmodified 790.37086 0.37086311 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 0 2 0 1 33.288 33.288 2 0.019759 8293 TMT1-1 97.798 39.221 399.49 202.97 313.06 304.9 347.08 237.41 375 221 315 302 353 232 1 1 1 1 1 1 21885 1914 641 1906 3029 3956 3956 1 ATVLESEGTR Unmodified 1061.5353 0.53530267 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 3 0 1 37.274 37.274 2 7.432E-05 10227 TMT1-2 107.08 73.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1915 2890 1907 3030 3957 3957 1 ATVMLYDDGNKR Oxidation (M) 1397.6609 0.66091389 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 1 0 1 5 0 1 40.029 40.029 3 0.030765 10092 TMT1-4 48.822 35.421 99.585 138.49 97.322 94.977 104.45 151.59 94 138 102 94 109 145 1 1 1 1 1 1 16838 1916 1225 1908 3031 3958 3958 206 1 ATVMLYDDGNKR Unmodified 1381.666 0.66599927 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 5.5 0.5 1 1 43.972 43.972 3 1.304E-08 11684 TMT1-5 132.5 111.15 610.83 725.54 597.79 569.32 437.56 965.04 576 730 619 561 475 917 3 3 3 3 3 3 83694 1917 1225 1908 3032;3033 3959;3960;3961 3960 3 ATVNLLGEEK Unmodified 1072.5764 0.57643921 1543 Q00765 REEP5 Receptor expression-enhancing protein 5 yes yes 0 0 0 0 0 5 0 1 53.329 53.329 2 8.292E-05 15318 TMT1-4 95.618 60.262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1918 1543 1909 3034 3962 3962 1 ATVNPSAPR Unmodified 911.48248 0.48247924 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 5 0 1 29.155 29.155 2 0.031944 5737 TMT1-4 73.233 49.805 15.485 52.245 58.303 27.853 19.628 61.268 15 51 58 29 22 58 1 1 1 1 1 1 4700.4 1919 568 1910 3035 3963 3963 1 ATVNQDTR Unmodified 903.44101 0.44100836 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 2.5 0.5 1 1 23.281 23.281 2 0.012634 4627 TMT1-2 96.331 73.44 70.253 56.183 47.386 91.386 46.814 67.954 66 58 51 87 51 65 2 2 2 2 2 2 5392.9 1920 714 1911 3036;3037 3964;3965 3965 2 ATVNTFGYIAK Unmodified 1183.6237 0.62372375 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 8 0 1 56.523 56.523 2 9.5713E-06 16185 TMT1-7 125.72 73.465 69.043 63.43 64.264 42.921 71.271 90.708 65 65 65 44 73 87 1 1 1 1 1 1 6764.8 1921 286 1912 3038 3966 3966 1 ATVQLITNPFIGLLTNR Unmodified 1870.0676 0.06763264 1599 Q05940-2;Q05940 SLC18A2 Synaptic vesicular amine transporter yes no 0 0 0 0 0 9 0 1 87.303 87.303 3 6.3587E-05 26402 TMT1-8 67.995 49.162 30.668 27.923 51.753 35.886 20.065 37.803 29 29 51 36 22 36 1 1 1 1 1 1 6574.9 1922 1599 1913 3039 3967 3967 1 ATVSAPFGK Unmodified 876.47052 0.47051757 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 2 47.99 47.99 2;3 6.2025E-09 12778 TMT1-7 174.16 130.91 214.46 360 258.81 214.85 367.41 283.73 203 356 269 217 370 276 3 3 3 3 3 3 37556 1923 1833 1914 3040;3041 3968;3969;3970 3968 3 ATVTATTK Acetyl (N-term) 833.44945 0.44944778 2949 Q9Y230 RUVBL2 RuvB-like 2 yes yes 1 0 0 0 0 3.5 0.5 1 1 38.868 38.868 2 0.0072014 9765 TMT1-3 53.166 24.744 146.65 183.41 84.349 126.06 178.4 149.48 138 183 94 123 181 145 1 1 1 1 1 1 16110 1924 2949 1915 3042;3043 3971;3972 3972 2 ATVTLEDHLACK Unmodified 1356.6708 0.6707503 413 P01127-2;P01127 PDGFB Platelet-derived growth factor subunit B yes no 0 0 0 0 0 5 0 1 46.289 46.289 3 0.0041847 12503 TMT1-4 66.023 41.731 130.54 135.9 127.43 123.48 178.78 142.01 123 138 131 123 181 138 1 1 1 1 1 1 11674 1925 413 1916 3044 3973 3973 1 ATVTPSPVK Unmodified 898.51238 0.51238239 2618 Q9H1E3-2;Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes no 0 0 0 0 0 7 0 1 39.991 39.991 2 0.00060123 9567 TMT1-6 133.23 98.135 115.5 152.01 115.68 172.88 146.69 126.93 109 152 123 167 152 123 1 1 1 1 1 1 14336 1926 2618 1917 3045 3974 3974 1 ATVVESSEK Unmodified 948.47639 0.47639081 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 3 0.816 1 1 1 36.361 36.361 2;3 9.6687E-09 9640 TMT1-1 170.95 112.66 471.28 638.66 501.97 472.63 651.37 594.36 445 638 521 471 663 575 2 2 2 2 2 2 103910 1927 1411 1918 3046;3047;3048 3975;3976;3977 3975 3 ATVVYQGER Unmodified 1021.5193 0.51925868 441 P02749 APOH Beta-2-glycoprotein 1 yes yes 0 0 0 0 0 4 0 1 34.905 34.905 2 0.0040694 8296 TMT1-3 100.25 57.245 46.582 57.616 57.134 43.327 72.315 59.764 44 58 58 44 73 58 1 1 1 1 1 1 5859.4 1928 441 1919 3049 3978 3978 1 ATYLEFIQQNEER Acetyl (Protein N-term) 1681.7948 0.79476484 1858 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 1 0 0 0 3 0 1 78.671 78.671 2 1.2026E-13 26454 TMT1-2 112.89 102.44 0 0 0 0 0 14 0 0 0 0 0 14 0 0 0 0 0 1 3824 1929 1858 1920 3050 3979 3979 1 AVAAAAAAAGPAGAGGGR Acetyl (Protein N-term) 1407.7219 0.72187466 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 1 0 0 0 4 0 1 49.512 49.512 2 2.1224E-10 14144 TMT1-3 44.82 33.106 38.167 51.12 34.097 35.816 79.733 67.015 36 51 36 36 80 65 1 1 1 1 1 1 14005 1930 1740 1921 3051 3980 3980 1 AVAAGNSCR Unmodified 904.4185 0.41849878 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 4 1.87 1 1 1 1 21.891 21.891 2 5.5278E-06 3646 TMT1-4 162.25 68.246 168.39 81.285 123 122.11 149.74 75.677 158 89 124 121 151 75 6 6 6 6 6 6 18990 1931 3010;3014 1922 3052;3053;3054;3055 3981;3982;3983;3984;3985;3986 3984 6 AVAALLTIPEAEK Unmodified 1324.7602 0.76021723 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 7 0 1 69.99 69.99 3 8.6364E-05 21363 TMT1-6 93.959 68.945 193.4 192.94 153.32 138.4 175.16 227.39 182 196 159 138 181 218 2 2 2 2 2 2 34202 1932 2116 1923 3056 3987;3988 3987 2 AVADLALIPDVDIDSDGVFK Acetyl (Protein N-term) 2114.0783 0.078316486 2735 Q9NRX4;Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase yes no 0 1 0 0 0 4 0 1 100.72 100.72 3 2.0337E-13 31546 TMT1-3 70.335 64.304 13.757 21.176 14.405 10.89 14.618 16.639 13 21 15 11 15 16 2 2 2 2 2 2 5240.4 1933 2735 1924 3057 3989;3990 3990 2 AVAEEYLSFFQFGGQSLDR Unmodified 2163.0273 0.027283968 2217 Q8NDX1-2;Q8NDX1 PSD4 PH and SEC7 domain-containing protein 4 yes no 0 0 0 0 0 7 0 1 85.667 85.667 3 4.7171E-05 27555 TMT1-6 69.148 53.726 15.789 36.902 20.169 30.118 20.037 46.332 15 36 22 29 22 44 1 1 1 1 1 1 5341.3 1934 2217 1925 3058 3991 3991 1 AVAEQIPLLVQGVR Unmodified 1491.8773 0.87731267 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 3.25 2 2 1 1 67.476 67.476 2;3 5.6967E-113 20316 TMT1-6 278.51 223.79 1634 2847.2 2133.9 1877.1 2163.9 2613.9 1548 2813 2215 1871 2237 2510 10 10 10 10 10 10 2235000 1935 3010 1926 3059;3060;3061;3062;3063;3064 3992;3993;3994;3995;3996;3997;3998;3999;4000;4001 3997 10 AVAFQNPQTHVIENLHAAAYR Unmodified 2349.1978 0.19781197 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 7 0 1 49.961 49.961 4 3.0363E-40 13495 TMT1-6 174.46 156.6 84.575 154.66 81.6 63.496 142.78 173.95 80 152 87 65 145 167 1 1 1 1 1 1 54115 1936 851 1927 3065 4002 4002 1 AVAFSPVTELK Unmodified 1160.6441 0.64412484 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 7 0 1 61.563 61.563 3 0.0049024 18060 TMT1-6 68.536 29.388 77.447 102.28 61.587 49.748 123.57 81.754 73 102 65 51 123 80 1 1 1 1 1 1 11291 1937 765 1928 3066 4003 4003 1 AVAFSPVTELKK Unmodified 1288.7391 0.73908786 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 1 8 0 1 55.771 55.771 4 0.0020049 15904 TMT1-7 72.652 49.416 53.912 87.899 61.835 66.202 61.568 98.447 51 87 65 65 65 94 1 1 1 1 1 1 3035.7 1938 765 1929 3067 4004 4004 1 AVAGDASESALLK Unmodified 1230.6456 0.6455814 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 5 0 1 51.429 51.429 3 0.00018379 14523 TMT1-4 88.803 48.287 122.89 151.15 136.91 61.024 98.934 144.28 116 152 138 65 102 138 1 1 1 1 1 1 18439 1939 481 1930 3068 4005 4005 1 AVAGNISDPGLQK Unmodified 1268.6725 0.67246486 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.8 1.94 1 1 3 48.298 48.298 2;3;4 3.7597E-47 13379 TMT1-5 224.58 147.39 2299.2 2694 2437.6 1870.5 1962.7 2969.3 2169 2716 2490 1878 2056 2838 6 6 6 6 6 6 1018700 1940 776 1931 3069;3070;3071;3072;3073 4006;4007;4008;4009;4010;4011 4010 6 AVAGVIDLGTVEIFPIFK Unmodified 1888.071 0.070986684 2935 Q9UPN3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 0 0 0 0 0 8 0 1 94.51 94.51 3 2.4521E-05 30773 TMT1-7 78.285 58.179 0 23.177 13.817 22.952 14.394 7.0513 0 22 15 22 15 7 0 1 1 1 1 1 2527.8 1941 2935 1932 3074 4012 4012 1 AVAHHTTAAFIR Unmodified 1293.6942 0.69420335 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 9 0 1 29.825 29.825 4 0.0065115 4874 TMT1-8 55.314 38.741 30.657 20.335 60.146 27.723 20.697 30.323 29 22 58 29 22 29 1 1 1 1 1 1 863.29 1942 1118 1933 3075 4013 4013 1 AVAIDLPGLGHSK Unmodified 1276.7139 0.71393574 2421 Q96IU4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes yes 0 0 0 0 0 7.5 0.5 1 1 56.038 56.038 3 1.3758E-16 15880 TMT1-6 169.6 127.12 686.16 651.04 803.96 550.7 831.81 870.64 647 668 805 562 848 839 3 3 3 3 3 3 83873 1943 2421 1934 3076;3077 4014;4015;4016 4014 3 AVAISLPK Unmodified 797.50109 0.50108942 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 8 0 1 54.887 54.887 2 0.006011 15524 TMT1-7 111.01 16.6 91.702 176.83 127.21 77.741 112.57 151.36 87 174 131 80 116 145 1 1 1 1 1 1 8642.6 1944 1223 1935 3078 4017 4017 1 AVALYFIDK Unmodified 1038.575 0.57498264 654 P11387;Q969P6-2;Q969P6 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 0 0 0 0 0 8 0 1 69.551 69.551 2 0.00079397 21291 TMT1-7 128.69 80.748 85.365 55.406 32.868 52.294 79.232 59.567 80 58 36 51 80 58 1 1 1 1 1 1 7901.9 1945 654 1936 3079 4018 4018 1 AVANETGAFFFLINGPEIMSK Unmodified 2255.1296 0.12964055 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 8.33 0.471 2 1 89.761 89.761 3 1.579E-24 29028 TMT1-7 109.37 72.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1946 1311 1937 3080;3081;3082 4019;4020;4021 4019 3 AVANSRPAK Unmodified 912.51411 0.51411372 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 8 0.816 1 1 1 25.412 25.412 3 0.0018827 4263 TMT1-7 97.277 50.943 2006.8 1057.4 1404.1 1028.8 1463.7 805.7 1883 1143 1408 1043 1471 795 4 4 4 4 4 4 87512 1947 776 1938 3083;3084;3085 4022;4023;4024;4025;4026 4024 5 AVANYDSVEEGEK Unmodified 1409.6311 0.63105355 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 2 0 1 45.051 45.051 3 3.8946E-13 12926 TMT1-1 155.08 126.32 108.16 114.13 119.75 133.51 134.61 104.89 102 116 123 131 138 102 1 1 1 1 1 1 27999 1948 1250 1939 3086 4027 4027 1 AVAPGGATR Unmodified 798.4348 0.43480077 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 5 0 1 25.924 25.924 2 0.0015578 4516 TMT1-4 80.462 29.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1949 1977 1940 3087 4028 4028 1 AVAPKPSSR Unmodified 911.51886 0.51886475 259 O75251-2;O75251 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 0 0 0 0 1 8 0 1 27.179 27.179 3 0.0012542 4846 TMT1-7 101.25 75.396 61.548 72.624 53.731 97.823 91.247 75.214 58 73 58 94 94 73 1 1 1 1 1 1 5112 1950 259 1941 3088 4029 4029 1 AVAPSPSGAIGGLLEQFAR Unmodified 1839.9843 0.98429694 2208 Q8NCE2-3;Q8NCE2-2;Q8NCE2 MTMR14 Myotubularin-related protein 14 yes no 0 0 0 0 0 8 0 1 79.615 79.615 3 1.3654E-09 25234 TMT1-7 93.381 81.235 31.752 35.433 43.637 13.526 14.277 23.045 30 36 43 15 15 22 1 1 1 1 1 1 7454.1 1951 2208 1942 3089 4030 4030 1 AVAQALEVIPR Unmodified 1165.6819 0.68190733 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6.33 0.471 2 1 60.083 60.083 2;3 2.1611E-06 17505 TMT1-6 133.81 76.248 446.48 621.49 356.47 461.54 481.94 608.79 421 618 385 450 501 584 4 4 4 4 4 4 113900 1952 1178 1943 3090;3091;3092 4031;4032;4033;4034 4034 4 AVASAAAALVLK Unmodified 1083.6652 0.66519463 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 9 0 4 64.916 64.916 2;3 6.1325E-39 18099 TMT1-8 214.83 133.24 4108.7 4678.4 4112.5 3462.9 4210.4 4986 3874 4722 4222 3465 4341 4790 9 9 9 9 9 9 1569900 1953 3010 1944 3093;3094;3095;3096 4035;4036;4037;4038;4039;4040;4041;4042;4043 4037 9 AVASDFYLR Acetyl (Protein N-term) 1082.5397 0.53965977 2360 Q96A72 MAGOHB Protein mago nashi homolog 2 yes yes 0 1 0 0 0 3 0 1 66.483 66.483 2 0.00049277 21661 TMT1-2 89.752 56.912 7.3474 15.22 14.6 15.258 14.198 23.047 7 15 15 15 15 22 1 1 1 1 1 1 5094.2 1954 2360 1945 3097 4044 4044 1 AVASLSVK Unmodified 773.4647 0.46470391 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 8 0 1 45.939 45.939 2 0.00091617 11997 TMT1-7 93.992 68.255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1955 668 1946 3098 4045 4045 1 AVATEANNSTFFSISSSDLVSK Unmodified 2274.1016 0.10157112 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 0 7 0 1 69.976 69.976 3 1.3876E-09 21407 TMT1-6 75.184 48.376 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1956 267 1947 3099 4046 4046 1 AVAVVVDPIQSVK Unmodified 1323.7762 0.77620165 74 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 0 7 0 1 63.097 63.097 3 2.2442E-06 18661 TMT1-6 113.61 88.392 84.547 139.47 99.079 55.909 84.013 128.72 80 138 102 58 87 123 1 1 1 1 1 1 14483 1957 74 1949 3100 4047 4047 1 AVCALLNSGGGIIK Unmodified 1371.7544 0.75442035 1628 Q08AF3;Q08AF3-2 SLFN5 Schlafen family member 5 yes no 0 0 0 0 0 9 0 1 65.813 65.813 3 5.5211E-07 18032 TMT1-8 102.97 66.123 84.875 109.09 69.781 50.097 79.077 67.034 80 109 73 51 80 65 1 1 1 1 1 1 7124.3 1958 1628 1950 3101 4048 4048 1 AVCCVGFSK Unmodified 1026.4627 0.46267178 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 8 0 1 47.733 47.733 2 0.0010297 12700 TMT1-7 125.31 101.96 100.05 77.182 71.293 57.408 92.336 97.569 94 80 73 58 94 94 1 1 1 1 1 1 11530 1959 374 1951 3102 4049 4049 1 AVCMLSNTTAIAEAWAR Oxidation (M) 1879.8921 0.89205282 1491;2068;1492;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 1 0 0 8 0.816 1 1 1 64.718 64.718 2;3 4.9578E-07 17597 TMT1-8 79.013 64.594 207.7 280.57 199.85 237.2 237.56 288.5 196 280 211 232 247 277 3 3 3 3 3 3 31839 1960 622;1491;2068;1492;2783 1952 3103;3104;3105 4050;4051;4052 4052 116 3 AVCMLSNTTAIAEAWAR Unmodified 1863.8971 0.89713819 1491;2068;1492;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 8.2 0.748 1 2 2 74.08 74.08 2;3 2.9077E-74 21134 TMT1-8 225.97 192 479.01 631.2 471.86 501.95 524.89 674.72 452 631 494 494 546 647 8 8 8 8 8 8 422060 1961 622;1491;2068;1492;2783 1952 3106;3107;3108;3109;3110 4053;4054;4055;4056;4057;4058;4059;4060 4060 8 AVCMLSNTTAVAEAWAR Unmodified 1849.8815 0.88148813 2510 Q9BQE3 TUBA1C Tubulin alpha-1C chain yes yes 0 0 0 0 0 8 0 2 69.795 69.795 2;3 4.0579E-18 21464 TMT1-7 132.97 126.08 77.179 109.09 100.83 33.975 130.28 150.85 73 109 101 36 131 145 2 2 2 1 2 2 80118 1962 2510 1953 3111;3112 4061;4062 4062 2 AVCMLSNTTAVAEAWAR Oxidation (M) 1865.8764 0.87640275 2510 Q9BQE3 TUBA1C Tubulin alpha-1C chain yes yes 0 0 1 0 0 8 0 1 60.611 60.611 3 2.0939E-10 17790 TMT1-7 89.311 69.419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1963 2510 1953 3113 4063 4063 297 1 AVDDGVNTFK Unmodified 1064.5138 0.51383895 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 4.5 0.5 1 1 48.08 48.08 2 2.4143E-09 13501 TMT1-3 171.33 105.03 471.15 502.13 458.94 310.85 498.25 548.63 444 509 467 318 508 528 2 2 2 2 2 2 78372 1964 1232 1954 3114;3115 4064;4065 4064 2 AVDEAADALLK Unmodified 1114.587 0.58700389 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 4 0 1 60.776 60.776 2 3.7538E-07 18486 TMT1-3 150.61 122.87 200.46 231.1 197.38 165.94 256.89 247.44 189 233 203 167 261 239 2 2 2 2 2 2 32595 1965 1913 1955 3116 4066;4067 4066 2 AVDFAER Unmodified 806.39227 0.39226725 1460 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 0 3 0 1 40.179 40.179 2 0.023785 11335 TMT1-2 94.662 69.212 115.89 114.24 81.743 111.18 164.17 157.35 109 116 87 109 167 152 1 1 1 1 1 1 30026 1966 1460 1956 3117 4068 4068 1 AVDGYVKPQIK Unmodified 1216.6816 0.68157298 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 8 0 1 46.619 46.619 3 0.00025475 12283 TMT1-7 101.95 77.163 241.66 460.82 291.97 303.05 338.03 442.34 229 453 309 299 351 424 1 1 1 1 1 1 22360 1967 1093;1253 1957 3118 4069 4069 1 AVDIPHMDIEALK Unmodified 1450.749 0.74900062 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 0 5.5 0.5 1 1 63.961 63.961 3 5.1334E-06 19600 TMT1-5 109.22 65.592 162.3 217.78 129.51 132.86 138.53 204.98 153 217 138 131 145 196 2 2 2 2 2 2 32563 1968 1457 1958 3119;3120 4070;4071 4071 2 AVDIPHMDIEALKK Unmodified 1578.844 0.84396364 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 1 7 0 1 59.656 59.656 4 0.0052776 17305 TMT1-6 58.32 38.214 169.44 289.61 131.76 154.88 180.95 280.52 160 285 145 152 189 268 1 1 1 1 1 1 23882 1969 1457 1959 3121 4072 4072 1 AVDITTPK Unmodified 843.47018 0.47018322 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 0 6 0 1 45.04 45.04 2 0.014846 12150 TMT1-5 93.429 70.409 161.53 165.8 123.31 172.18 159.72 205.44 152 168 131 167 167 197 1 1 1 1 1 1 21954 1970 279 1960 3122 4073 4073 1 AVDSLVPIGR Unmodified 1025.5869 0.58694431 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 3.5 2.5 1 1 55.268 55.268 2 5.2464E-05 16077 TMT1-5 146.03 98.373 527.23 835.3 670.2 772.83 777.54 1240 499 829 700 757 818 1184 3 3 3 3 3 3 133620 1971 888 1961 3123;3124 4074;4075;4076 4075 3 AVDSQILPK Unmodified 969.5495 0.54949617 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 0 6 0 1 49.769 49.769 2 0.0008423 14050 TMT1-5 128 107.67 202 461.49 284.18 335.87 360.87 342.55 192 451 303 329 371 331 1 1 1 1 1 1 52181 1972 1573 1962 3125 4077 4077 1 AVDVFFPPEAQNDFPVAMQISEK Unmodified 2578.2414 0.24137584 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 6 0 1 84.129 84.129 4 0.035883 27594 TMT1-5 29.745 14.975 38.21 51.24 26.799 29.461 33.956 68.321 36 51 29 29 36 65 1 1 1 1 1 1 6337.9 1973 1540 1963 3126 4078 4078 1 AVEDEATK Unmodified 861.40798 0.40797689 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2 0.816 1 1 1 34.033 34.033 2 7.0203E-05 8633 TMT1-1 157.86 80.961 3777.8 2112.7 3117.5 2599.1 3488.3 1916.3 3548 2274 3123 2608 3512 1891 4 4 4 4 4 4 465640 1974 3010 1964 3127;3128;3129 4079;4080;4081;4082 4080 4 AVEFQEAQAYADDNSLLFMETSAK Unmodified 2677.2218 0.22176261 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 5 0 1 78.252 78.252 3 1.6872E-06 25169 TMT1-4 68.445 57.607 15.897 22.093 14.535 6.5053 14.857 15.566 15 22 15 7 15 15 1 1 1 1 1 1 4597.9 1975 1236 1965 3130 4083 4083 1 AVEGCVSASQAATEDGQLLR Unmodified 2060.9797 0.97968185 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.67 0.943 1 6 6 1 1 52.845 52.845 2;3;4 6.3911E-45 16031 TMT1-1 180.12 157.77 1206.2 1648.7 1465.5 1274.7 1327.8 1572.8 1140 1649 1504 1269 1377 1511 20 20 20 20 20 20 803270 1976 3010 1966 3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145 4084;4085;4086;4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108 4087 25 AVEHINK Unmodified 809.43955 0.43955179 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 0 3.67 1.89 1 2 30.588 30.588 2;3 0.0021628 6360 TMT1-4 105.04 38.358 1455.2 2050.4 1828.5 1373.7 2001.4 1744.4 1376 2048 1867 1391 2031 1690 6 6 6 6 6 6 627970 1977 514 1967 3146;3147;3148 4109;4110;4111;4112;4113;4114 4112 6 AVEILADIIQNSTLGEAEIER Unmodified 2283.1958 0.19580586 278 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 0 6 0 1 95.963 95.963 3 0.040515 31784 TMT1-5 33.024 23.978 0 15.854 6.3173 6.8575 22.17 15.357 0 15 7 7 22 15 0 1 1 1 1 1 1821.4 1978 278 1968 3149 4115 4115 1 AVELAANTK Unmodified 915.50255 0.50254598 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 5.5 0.5 1 1 42.889 42.889 2 1.1675E-08 11299 TMT1-5 169.09 88.649 833.77 1783.8 1185.7 761.06 1455.3 1410.4 792 1748 1230 786 1471 1362 4 4 4 4 4 4 177790 1979 937 1969 3150;3151 4116;4117;4118;4119 4118 4 AVELGEK Unmodified 744.40177 0.4017693 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 4 0 1 42.857 42.857 2 0.0266 11358 TMT1-3 92.47 32.176 153.47 200.41 185.62 136.45 176.52 220.96 145 201 189 138 182 212 1 1 1 1 1 1 11447 1980 2339 1970 3152 4120 4120 1 AVELGGR Unmodified 700.38679 0.38678794 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 4 0 1 34.452 34.452 2 0.009578 8099 TMT1-3 111.73 34.231 68.343 147.83 110.33 133.97 140.35 150.57 65 145 116 131 145 145 1 1 1 1 1 1 13080 1981 699 1971 3153 4121 4121 1 AVELLGDIVQNCSLEDSQIEK Unmodified 2359.1577 0.15770579 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 5 0 1 79.404 79.404 4 2.5861E-07 25550 TMT1-4 80.752 77.654 84.607 132.09 95.298 150.72 110.79 105.57 80 131 102 145 116 102 1 1 1 1 1 1 16050 1982 979 1972 3154 4122 4122 1 AVELLGDIVQNCSLEDSQIEKER Unmodified 2644.3014 0.30140992 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 1 5 0 1 72.174 72.174 3 0.005948 22698 TMT1-4 40.132 30.012 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1983 979 1973 3155 4123 4123 1 AVENSSTAIGIR Unmodified 1216.6412 0.64116473 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 0 4.5 0.5 1 1 41.082 41.082 2 3.0675E-18 10742 TMT1-3 181.31 125.41 177.14 177.39 194.15 143.45 184.11 203.68 167 181 196 145 189 196 2 2 2 2 2 2 35839 1984 892 1974 3156;3157 4124;4125 4124 2 AVETELEYQK Unmodified 1208.5925 0.5924832 3011 Q9Y4D1;Q9Y4D1-2 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 4 0 1 48.802 48.802 3 0.0016245 13820 TMT1-3 86.624 64.538 76.965 116.05 130.93 77.637 106.31 120.62 73 116 131 80 109 116 1 1 1 1 1 1 10758 1985 3011 1975 3158 4126 4126 1 AVETKDER Unmodified 946.47197 0.47197413 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 1 3 0 1 25.958 25.958 3 0.023365 5729 TMT1-2 69.716 37.845 282.74 132.59 157.23 146.04 163.34 134.99 265 145 160 145 167 131 1 1 1 1 1 1 14379 1986 2849 1976 3159 4127 4127 1 AVETLLDLIMK Unmodified 1244.705 0.70501054 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 8 0.707 1 2 1 96.123 96.123 2;3 2.0712E-08 31314 TMT1-7 159.4 85.473 362.5 660.07 551.13 469.96 521.38 728.12 344 652 567 469 543 697 6 6 6 6 6 6 142150 1987 50 1977 3160;3161;3162;3163 4128;4129;4130;4131;4132;4133 4129 6 AVETLLDLIMK Oxidation (M) 1260.6999 0.69992516 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 1 0 0 8 0 1 87.109 87.109 3 0.00013671 28067 TMT1-7 105.4 68.872 146.81 126.67 104.98 103.7 81.266 144.79 138 130 109 102 87 138 2 2 2 2 2 2 23370 1988 50 1977 3164 4134;4135 4135 11 2 AVETLLDLIMKR Unmodified 1400.8061 0.80612157 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 1 9 0 1 85.223 85.223 3 0.0031966 25585 TMT1-8 74.698 53.397 61.584 80.278 41.226 28.167 57.05 67.662 58 80 44 29 58 65 1 1 1 1 1 1 4784.3 1989 50 1978 3165 4136 4136 1 AVETTAQSDNK Unmodified 1162.5466 0.54659564 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 2.5 0.5 1 1 32.302 32.302 3 0.014548 7948 TMT1-1 57.293 31.174 77.366 102.05 75.366 129.38 88.477 113.67 73 102 81 124 94 109 2 2 2 2 2 2 12155 1990 1057 1979 3166;3167 4137;4138 4137 2 AVEVAWETLQEEFSR Unmodified 1792.8632 0.86317875 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 5 0 1 85.526 85.526 3 3.9535E-06 27969 TMT1-4 100.4 90.477 46.925 51.016 4.9917 15.831 20.694 46.313 44 51 7 15 22 44 2 2 1 1 2 2 10454 1991 220 1980 3168 4139;4140 4140 2 AVEVLPK Unmodified 754.45889 0.45889025 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 5.5 0.5 1 1 48.071 48.071 2 0.0099031 13284 TMT1-4 110.35 37.524 7102.3 7987.6 8005 5286.5 7951.2 9634.7 6701 8083 8092 5410 8150 9251 3 3 3 3 3 3 781850 + 1992 506 1981 3169;3170 4141;4142;4143 4141 3 AVEVQGPSLESGDHGK Unmodified 1608.7744 0.77436375 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 42.071 42.071 3 3.7779E-09 11132 TMT1-3 114.28 108.82 115.68 129.82 105.38 93.93 134.6 158.19 109 131 109 94 138 152 1 1 1 1 1 1 16684 1993 1632 1982 3171 4144 4144 1 AVEYFQDNSPDSPELNK Unmodified 1951.88 0.87995103 2938 Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5;Q9UPT5-4 EXOC7 Exocyst complex component 7 yes no 0 0 0 0 0 4 0 1 58.007 58.007 3 8.0451E-05 17425 TMT1-3 77.506 61.564 54.13 49.652 57.562 43.602 56.341 67.682 51 51 58 44 58 65 1 1 1 1 1 1 9382.6 1994 2938 1983 3172 4145 4145 1 AVEYGLIQPNQDGE Unmodified 1531.7155 0.71545188 2642 Q9H3U1;Q9H3U1-2;Q9H3U1-3 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 3 0 1 62.702 62.702 3 0.021495 20328 TMT1-2 48.625 41.896 39.349 36.24 28.374 14.165 28.65 30.096 37 37 29 15 29 29 1 1 1 1 1 1 10108 1995 2642 1984 3173 4146 4146 1 AVEYLLMGIPGDR Unmodified 1432.7384 0.73843593 1302 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 0 7 0 1 75.716 75.716 3 0.00020324 23622 TMT1-6 88.087 64.851 22.252 44.085 9.943 54.947 10.813 38.067 21 43 14 51 14 36 1 1 1 1 1 1 11044 1996 1302 1985 3174 4147 4147 1 AVEYNALFK Unmodified 1053.5495 0.54949617 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 7 0 1 59.225 59.225 2 0.0016705 17168 TMT1-6 115.71 93.583 200.5 248.49 175.23 202.46 128.26 258.58 189 249 185 197 140 246 1 1 1 1 1 1 19749 1997 199 1986 3175 4148 4148 1 AVFDETYPDPVR Unmodified 1407.667 0.66704513 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3.5 0.5 1 1 56.561 56.561 2 2.2976E-08 17953 TMT1-2 140.49 101.47 138.79 166.77 156.65 129.42 177.15 181.5 131 168 160 130 181 175 3 3 3 3 3 3 34875 1998 1184 1987 3176;3177 4149;4150;4151 4150 3 AVFDNLIQLEHLNIVK Unmodified 1865.0411 0.041083539 2870 Q9UHY1 NRBP1 Nuclear receptor-binding protein yes yes 0 0 0 0 0 8 0 1 78.078 78.078 3 4.796E-17 24620 TMT1-7 141.55 101.87 69.045 63.436 63.903 51.029 48.12 83.907 65 65 65 51 51 80 1 1 1 1 1 1 12655 1999 2870 1988 3178 4152 4152 1 AVFDQIIELQNAQDAIYR Unmodified 2106.0746 0.074568512 2388 Q96CW5-2;Q96CW5 TUBGCP3 Gamma-tubulin complex component 3 yes no 0 0 0 0 0 6 0 1 80.702 80.702 3 0.00011397 26239 TMT1-5 73.11 50.635 38.32 27.801 28.197 29.634 20.353 37.795 36 29 29 29 22 36 1 1 1 1 1 1 5437.1 2000 2388 1989 3179 4153 4153 1 AVFDVDKK Unmodified 920.49673 0.49673232 1326 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 1 7 0 1 46.872 46.872 3 0.040426 12320 TMT1-6 59.153 28.822 184.46 259.46 156.29 177.59 174.38 197.56 174 258 167 174 181 190 1 1 1 1 1 1 20039 2001 1326 1990 3180 4154 4154 1 AVFPEGPCEEPLQLR Unmodified 1740.8505 0.85050558 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 62.87 62.87 2 6.1993E-05 19324 TMT1-3 91.961 56.547 23.33 21.362 28.269 38.371 20.464 22.868 22 22 29 37 22 22 1 1 1 1 1 1 6825.1 2002 2440 1991 3181 4155 4155 1 AVFPIYLDDVYENAVDAAR Unmodified 2140.0477 0.047685059 1920 Q2M389-2;Q2M389 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 0 5 0 1 84.777 84.777 3 2.0776E-09 27628 TMT1-4 81.723 69.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2003 1920 1992 3182 4156 4156 1 AVFPSIVGR Unmodified 944.54435 0.54435122 1357;1479;1488;2044;9 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;A5A3E0;Q6S8J3 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;POTEF;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member E no no 0 0 0 0 0 6.75 3.34 1 1 2 56.668 56.668 2 5.1469E-64 14013 TMT 1-phospho 254.37 153.16 23680 35563 31824 25384 39699 31121 22413 35425 32540 25643 40090 30257 6 6 6 6 6 6 4862700 2004 1357;1479;1488;9;2044 1993 3183;3184;3185;3186 4157;4158;4159;4160;4161;4162;4163 4157 7 AVFPSIVGRPR Unmodified 1197.6982 0.6982261 1357;1479;1488;2044;9 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;A5A3E0;Q6S8J3 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;POTEF;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member E no no 0 0 0 0 1 6.75 3.34 1 1 2 47.469 47.469 3 1.7561E-12 11581 TMT 1-phospho 176.65 144.33 1853.1 2554.2 2161.4 1753 1993.9 2614.5 1751 2552 2220 1756 2069 2506 8 8 8 8 8 8 471140 2005 1357;1479;1488;9;2044 1994 3187;3188;3189;3190 4164;4165;4166;4167;4168;4169;4170;4171 4165 8 AVFQANQENLPILK Unmodified 1583.8671 0.86714192 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 7.5 0.5 1 1 65.584 65.584 3 0.00013368 19704 TMT1-6 83.204 54.3 77.239 116.81 84.226 56.361 107.03 128.06 73 116 87 58 109 123 1 1 1 1 1 1 20817 2006 481 1995 3191;3192 4172;4173 4172 2 AVFQESIR Unmodified 948.50288 0.50288033 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 5 0 1 44.752 44.752 2 0.0015322 11931 TMT1-4 87.251 18.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2007 39 1996 3193 4174 4174 1 AVFSDSLVPALEAFGLEGVFR Unmodified 2223.1576 0.15756986 2018 Q6L8Q7-2;Q6L8Q7 PDE12 2',5'-phosphodiesterase 12 yes no 0 0 0 0 0 8 0 1 100.67 100.67 3 2.3035E-10 32797 TMT1-7 96.379 79.886 10.668 6.6496 4.7275 5.1566 1.4172 12.752 10 7 5 5 2 12 1 1 1 1 1 1 3260.9 2008 2018 1997 3194 4175 4175 1 AVFVDLEPTVIDEIR Unmodified 1714.9142 0.91415169 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 4 1.53 1 3 1 1 78.617 78.617 2;3 2.3011E-132 25605 TMT1-3 289.22 266.34 662.99 849.39 743.55 515.24 584.38 904.35 626 852 756 522 611 864 7 7 6 7 7 7 612530 2009 1492 1998 3195;3196;3197;3198;3199;3200 4176;4177;4178;4179;4180;4181;4182;4183 4179 8 AVFVDLEPTVIDEVR Unmodified 1700.8985 0.89850163 1491;2068;2510 P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 0 4.88 1.76 1 4 1 1 1 75.168 75.168 2;3 9.2531E-35 24023 TMT1-4 203.03 157.03 1036.2 1120.4 913.82 837.51 692.79 1184.8 976 1133 946 828 738 1130 9 9 9 9 9 9 1349500 2010 1491;2068;2510 1999 3201;3202;3203;3204;3205;3206;3207;3208 4184;4185;4186;4187;4188;4189;4190;4191;4192;4193;4194 4192 11 AVFVPDIYSR Unmodified 1165.6132 0.61315906 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 7 0 1 61.924 61.924 2 0.00098216 18201 TMT1-6 104.01 59.321 123.23 120.79 106.19 87.2 83.087 113.82 116 123 109 87 87 109 1 1 1 1 1 1 14148 2011 327 2000 3209 4195 4195 1 AVFVSEGK Unmodified 835.44397 0.44396847 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 7.33 1.25 1 1 1 46.286 46.286 2 0.0062398 12095 TMT1-6 107.9 50.336 628.64 1264.3 755.24 873.48 735.76 1042.9 596 1240 807 853 776 998 2 2 2 2 2 2 552020 2012 971 2001 3210;3211;3212 4196;4197;4198 4197 3 AVFWDIK Unmodified 877.46979 0.46978929 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 66.385 66.385 2 0.029153 20043 TMT1-7 91.041 47.795 115.31 206.53 101.11 86.537 134.39 174.19 109 203 109 87 138 167 1 1 1 1 1 1 13334 2013 2028 2002 3213 4199 4199 1 AVGAQASVGSR Unmodified 1001.5254 0.52540669 2769 Q9NWV8;Q9NWV8-3 BABAM1 BRISC and BRCA1-A complex member 1 yes no 0 0 0 0 0 5.5 0.5 1 1 29.182 29.182 2 3.7709E-16 5846 TMT1-4 153.1 108.34 15.763 21.721 37.352 4.8779 29.077 30.084 15 22 36 7 29 29 1 1 1 1 1 1 1670.9 2014 2769 2003 3214;3215 4200;4201 4200 2 AVGDASK Unmodified 646.3286 0.32860436 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.5 0.5 1 1 30.557 30.557 2 0.038323 6540 TMT1-3 86.953 28.786 414.41 198.42 334.45 266.17 420.55 251.3 389 218 333 269 422 247 2 2 2 2 2 2 23465 2015 3010 2004 3216;3217 4202;4203 4202 2 AVGDASKR Unmodified 802.42972 0.42971539 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 0 1 25.022 25.022 3 0.036551 4247 TMT1-4 60.973 7.8028 116.22 52.539 79.921 65.108 62.388 76.038 109 58 80 65 65 73 1 1 1 1 1 1 4869 2016 3010 2005 3218 4204 4204 1 AVGDGIVLCK Unmodified 1030.5481 0.54811597 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 6 0 1 53.964 53.964 2 0.00030142 15686 TMT1-5 124.23 87.537 153.92 133.68 166.09 130.36 155.67 166.12 145 138 167 131 160 160 1 1 1 1 1 1 16871 2017 691 2006 3219 4205 4205 1 AVGPEITK Unmodified 813.45962 0.45961853 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 5.5 0.5 1 1 43.271 43.271 2 3.7812E-05 11420 TMT1-5 130.27 49.894 291.5 497.83 358.99 394.83 127.44 451.55 276 492 377 383 154 427 1 1 1 1 1 1 37773 2018 956 2007 3220;3221 4206;4207 4207 2 AVGVAVATGLHTELGK Unmodified 1521.8515 0.85149185 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 7 0 2 55.944 55.944 3;4 1.0016E-35 15813 TMT1-6 194.59 168.55 595.83 784.01 724.89 577.94 738.38 813.61 563 786 740 581 758 783 3 3 3 3 3 3 113510 2019 2344 2008 3222;3223 4208;4209;4210 4208 3 AVHAHVNLGYTK Unmodified 1308.6939 0.693869 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 0 7 0 1 36.288 36.288 4 0.00012385 8099 TMT1-6 94.616 89.01 130.15 158.57 173.04 113.51 157.8 126.62 123 160 174 116 160 123 1 1 1 1 1 1 9480.3 2020 2855 2009 3224 4211 4211 1 AVHISNPK Unmodified 864.48175 0.48175096 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 7 0 1 33.676 33.676 3 0.023117 7045 TMT1-6 60.589 43.204 68.83 79.026 86.889 48.407 114.72 127.84 65 80 87 51 116 123 1 1 1 1 1 1 7978.4 2021 2740 2010 3225 4212 4212 1 AVIEHNLLSASK Unmodified 1280.7089 0.70885036 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 7 0 1 48.156 48.156 3 0.00065128 12843 TMT1-6 81.494 59.02 391.52 570.62 438.85 435.92 420.75 566.83 370 568 457 430 440 543 2 2 2 2 2 2 16926 2022 2532 2011 3226 4213;4214 4214 2 AVIFCLSADK Unmodified 1122.5743 0.57433072 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 0 8 0 2 64.05 64.05 2;3 0.00015948 19123 TMT1-7 133.13 63.79 176.98 232 174.27 175.96 203.8 226.57 167 232 182 174 210 218 2 2 2 2 2 2 16520 2023 1364 2012 3227;3228 4215;4216 4215 2 AVIFCLSADKK Unmodified 1250.6693 0.66929373 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 1 9 0 1 56.748 56.748 3 0.0038427 14401 TMT1-8 79.23 50.272 749.55 709.72 920.89 681.27 725.56 987.73 707 729 922 686 756 946 2 2 2 2 2 2 65492 2024 1364 2013 3229 4217;4218 4217 2 AVIHYRDDETMYVESK Unmodified 1954.9095 0.90947702 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 4 0 1 45.388 45.388 4 0.022551 12529 TMT1-3 46.249 27.416 115.27 167.56 141.11 115.44 156.35 166.1 109 167 145 116 160 160 1 1 1 1 1 1 21682 2025 129 2014 3230 4219 4219 1 AVIPGLR Unmodified 724.45956 0.45955895 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 8 0 1 48.311 48.311 2 0.010079 12914 TMT1-7 109.6 29.105 146.08 173.21 187.67 127.92 216.66 220.88 138 175 189 131 220 213 1 1 1 1 1 1 18944 2026 1658 2015 3231 4220 4220 1 AVIQHFQEK Unmodified 1098.5822 0.58219329 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 7 0 1 40.317 40.317 3 0.00016401 9683 TMT1-6 127.94 104.63 270.38 415.15 552.62 485.32 513.87 560.98 257 416 555 483 531 540 1 1 1 1 1 1 58723 2027 482 2016 3232 4221 4221 1 AVIQVSQIVAR Unmodified 1182.7085 0.70845643 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 8 0 1 55.472 55.472 2 0.00015734 15737 TMT1-7 110.46 79.771 84.855 85.286 93.323 63.757 91.751 106.11 80 87 94 65 94 102 1 1 1 1 1 1 14484 2028 2098 2017 3233 4222 4222 1 AVITSLLDQIPEMFADTR Unmodified 2019.0347 0.034677532 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 8 0 1 97.729 97.729 3 4.35E-07 31920 TMT1-7 91.317 78.376 7.3635 22.82 5.4569 15.956 6.0458 15.817 7 22 7 15 7 15 1 1 1 1 1 1 3359.9 2029 1293 2018 3234 4223 4223 1 AVLAELPQQVVQYFK Unmodified 1731.956 0.95595693 2403 Q96FN4-2;Q96FN4 CPNE2 Copine-2 yes no 0 0 0 0 0 9 0 1 83.829 83.829 3 5.4901E-05 25044 TMT1-8 71.513 48.936 61.784 49.535 33.658 45.141 50.26 29.48 58 51 36 44 51 29 1 1 1 1 1 1 6299.5 2030 2403 2019 3235 4224 4224 1 AVLAESYER Unmodified 1036.5189 0.51892433 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 3 0 1 42.138 42.138 2 0.00023952 12122 TMT1-2 144.12 103.92 68.679 102.35 92.384 63.676 99.068 136.82 65 102 94 65 102 131 1 1 1 1 1 1 11423 2031 832 2020 3236 4225 4225 1 AVLAVHPDK Unmodified 948.53927 0.53926584 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 6 0 1 39.79 39.79 3 0.031081 10109 TMT1-5 51.346 27.789 115.3 182.74 123.58 148.62 133.15 127.32 109 181 131 145 138 123 1 1 1 1 1 1 6397.5 2032 119 2021 3237 4226 4226 1 AVLCPPPVK Unmodified 979.55247 0.55247306 1466 P63000;P63000-2;P60763 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 0 0 8 0 1 50.231 50.231 2 8.2276E-05 13690 TMT1-7 151.51 75.656 383.93 467.28 540.65 428.1 514.13 599.35 363 472 545 430 530 576 3 3 3 3 3 3 40862 2033 1466 2022 3238 4227;4228;4229 4228 3 AVLCPPPVKK Unmodified 1107.6474 0.64743608 1466 P63000;P63000-2;P60763 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 0 1 9 0 1 45.975 45.975 3 0.0056976 10249 TMT1-8 83.948 42.5 115.78 98.819 113.78 117.2 149.25 126.86 109 102 116 116 152 123 1 1 1 1 1 1 6938.1 2034 1466 2023 3239 4230 4230 1 AVLCPQPTR Unmodified 1040.5437 0.54369929 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 37.548 37.548 2 0.0010297 8711 TMT1-6 125.31 68.768 191.27 291.51 248.39 179.21 202.82 280.97 181 290 254 181 211 269 3 3 3 3 3 3 44829 2035 717 2024 3240;3241 4231;4232;4233 4233 3 AVLDALLASK Unmodified 999.59645 0.59644637 2003 Q66K74-2;Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 0 0 9 0 1 75.036 75.036 2 0.00032874 21634 TMT1-8 123.63 73.585 61.391 94.85 61.374 66.353 55.001 76.249 58 94 65 65 58 73 1 1 1 1 1 1 8487.5 2036 2003 2025 3242 4234 4234 1 AVLDALLEGK Unmodified 1027.5914 0.59136099 1509 P78559-2;P78559;P46821 MAP1A;MAP1B Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2;Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 0 0 0 0 0 7 0 1 76.203 76.203 3 0.0024209 23857 TMT1-6 80.688 44.264 30.725 35.635 35.705 21.405 27.254 61.05 29 36 36 22 29 58 1 1 1 1 1 1 3887.4 2037 1509 2026 3243 4235 4235 1 AVLDVFEEGTEASAATAVK Unmodified 1906.9524 0.95238769 408 P01011 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 0 0 0 0 0 5 0 1 73.484 73.484 3 2.6428E-08 23210 TMT1-4 73.138 56.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2038 408 2027 3244 4236 4236 1 AVLEALGSCLNNK Unmodified 1387.7129 0.71294946 1005 P34896-3;P34896-2;P34896 SHMT1 Serine hydroxymethyltransferase, cytosolic yes no 0 0 0 0 0 9 0 1 66.56 66.56 3 0.00050131 18318 TMT1-8 71.241 49.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2039 1005 2028 3245 4237 4237 1 AVLEEDEEVTEEAEMEPEDK Unmodified 2319.9788 0.97879795 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 2 0 2 62.168 62.168 3;4 3.6327E-14 19719 TMT1-1 115.34 103.04 61.392 72.189 80.38 34.564 57.767 68.708 58 73 80 37 59 66 2 2 2 2 2 2 12247 2040 2650 2029 3246;3247 4238;4239 4239 2 AVLEEDEEVTEEAEMEPEDKGH Oxidation (M) 2530.0541 0.054088163 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 1 2 0 4 55.993 55.993 4 1.151E-22 16624 TMT1-1 122.53 120.32 176.66 271.04 195.11 190.13 256.25 294.37 167 269 204 189 263 283 5 5 5 5 5 5 25904 2041 2650 2030 3248;3249;3250;3251 4240;4241;4242;4243;4244 4240 304 5 AVLEEDEEVTEEAEMEPEDKGH Unmodified 2514.0592 0.05917354 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 1 2.5 0.5 1 1 57.102 57.102 4 1.0532E-28 17820 TMT1-1 131.54 114.58 299.43 460.7 320.32 316.03 313.33 626.39 283 457 336 312 334 596 3 3 3 3 3 3 120140 2042 2650 2030 3252;3253 4245;4246;4247 4246 3 AVLENNLGAAVLR Unmodified 1338.7619 0.76194857 2799 Q9NZL9-4;Q9NZL9-2;Q9NZL9;Q9NZL9-3 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 0 6 0 1 59.373 59.373 2 3.9691E-28 17848 TMT1-5 169.21 135.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2043 2799 2031 3254 4248 4248 1 AVLFCLSEDK Unmodified 1180.5798 0.57981002 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 7 0 1 64.972 64.972 2 0.0002692 19483 TMT1-6 125.82 31.508 306.78 428.43 375.42 287.62 370.67 426.48 290 428 384 290 381 410 2 2 2 2 2 2 69145 2044 865 2032 3255 4249;4250 4250 2 AVLFCLSEDKK Unmodified 1308.6748 0.67477304 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 6.8 2.93 1 3 1 57.586 57.586 3;4 2.2424E-07 14792 TMT1-8 133.91 101.41 30260 49340 41743 32302 42103 51114 28665 48946 42786 32554 43348 49076 9 9 9 9 9 9 1202900 2045 865 2033 3256;3257;3258;3259;3260 4251;4252;4253;4254;4255;4256;4257;4258;4259 4259 9 AVLGEVK Unmodified 714.42759 0.42759012 904 P26641;P26641-2;Q32ZD7;P06935;Q9Q6P4;P14335 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 6 0 1 45.762 45.762 2 0.0098358 12429 TMT1-5 110.63 6.5222 773.92 884.17 825.13 625.8 840.11 985.53 730 893 841 632 863 947 1 1 1 1 1 1 144820 2046 904 2034 3261 4260 4260 1 AVLHVALR Unmodified 877.54977 0.54977095 516;35 P06744;P06744-2;CON__Q3ZBD7 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 0 8.5 0.5 1 1 40.803 40.803 3 2.3949E-06 8422 TMT1-8 164.89 112.21 107.34 198.19 186.31 129.19 153.61 197.09 102 196 189 131 159 189 2 2 2 2 2 2 85599 + 2047 516;35 2035 3262;3263 4261;4262 4262 2 AVLIAGQPGTGK Unmodified 1110.6397 0.63970816 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 0 8 0 1 48.593 48.593 2 3.4095E-18 13040 TMT1-7 180.07 141.04 53.921 95.481 53.798 66.385 77.265 97.999 51 94 58 65 80 94 1 1 1 1 1 1 8918.4 2048 2949 2036 3264 4263 4263 1 AVLIDKDQSPK Unmodified 1212.6714 0.67140222 2020 Q6NVY1 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes yes 0 0 0 0 1 7 0 1 45.367 45.367 3 0.028161 11654 TMT1-6 56.087 24.739 76.931 154.81 103.68 102.77 134.71 143.26 73 152 109 102 138 138 1 1 1 1 1 1 10012 2049 2020 2037 3265 4264 4264 1 AVLLAGPPGTGK Unmodified 1079.6339 0.63389451 2955 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 0 9 0 1 53.939 53.939 3 0.00046198 13362 TMT1-8 80.979 44.286 108.04 129.98 126.48 155.39 170.79 118.78 102 131 131 152 174 116 1 1 1 1 1 1 10620 2050 2955 2038 3266 4265 4265 1 AVLLASDAQECTLEEVVER Unmodified 2131.0467 0.046698781 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 3 0.816 1 1 1 70.935 70.935 3 3.1455E-23 23470 TMT1-2 130.7 126.67 66.666 96.392 75.203 82.854 63.634 137.83 63 96 77 81 69 131 4 4 3 4 4 4 30580 2051 1916 2039 3267;3268;3269 4266;4267;4268;4269 4267 4 AVLLDEDDDLWVELR Unmodified 1799.8941 0.89414453 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 3.5 0.5 1 1 81.356 81.356 3 3.1123E-08 27400 TMT1-2 114.31 93.929 7.4501 3.6341 7.152 3.7351 11.199 3.9444 7 4 7 4 11 4 1 1 1 1 1 1 5043.4 2052 1878 2040 3270;3271 4270;4271 4270 2 AVLLGPPGAGK Unmodified 978.58622 0.58621603 1303 P54819-2;P54819;P54819-3;P54819-5 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 8.67 0.471 1 2 53.103 53.103 2;3 3.5477E-06 13040 TMT1-8 120.46 84.271 316.12 351.18 312.7 268.44 310.76 338.65 298 355 321 268 320 326 4 4 4 4 4 4 79462 2053 1303 2041 3272;3273;3274 4272;4273;4274;4275 4275 4 AVLNPLCQVDYR Unmodified 1446.7289 0.72893388 1857;1858 Q15436;Q15437 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B no no 0 0 0 0 0 7 0 1 59.811 59.811 2 7.1611E-13 17402 TMT1-6 144.55 92.823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2054 1857;1858 2042 3275 4276 4276 1 AVLNPTNADILIETK Unmodified 1610.8879 0.88793694 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 6 0 1 67.73 67.73 3 7.9225E-06 21111 TMT1-5 96.247 61.563 30.386 97.292 40.355 28.347 50.226 52.933 29 94 44 29 51 51 1 1 1 1 1 1 7208.7 2055 1785 2043 3276 4277 4277 1 AVLNPTPIK Unmodified 951.57532 0.57531699 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 8 0 1 50.049 50.049 2 0.001865 13637 TMT1-7 111.46 85.346 84.67 116.07 98.33 104.24 73.912 145 80 116 102 102 80 138 1 1 1 1 1 1 10976 2056 1522 2044 3277 4278 4278 1 AVLNPTPIKR Unmodified 1107.6764 0.67642802 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 1 9 0 1 41.383 41.383 3 0.0087379 8619 TMT1-8 76.332 34.679 61.359 79.652 79.618 41.602 92.77 106.08 58 80 80 44 94 102 1 1 1 1 1 1 16722 2057 1522 2045 3278 4279 4279 1 AVLNQFR Unmodified 846.47119 0.47118627 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 8 0 1 45.101 45.101 2 0.00094715 11623 TMT1-7 150.06 92.955 383.29 235.08 303.81 276.65 309.14 435.7 360 250 307 275 322 417 1 1 1 1 1 1 54161 2058 772 2046 3279 4280 4280 1 AVLPLLDAQQPCYLLYR Unmodified 2032.0816 0.081568145 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 8.67 0.471 1 2 80.355 80.355 2;3 1.6011E-24 25526 TMT1-7 146.96 119.93 131.58 143.31 125.77 150.69 132.21 151.86 124 145 131 147 138 146 3 3 3 3 3 3 71424 2059 2013 2047 3280;3281;3282 4281;4282;4283;4284 4281 4 AVLPTSK Unmodified 714.42759 0.42759012 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 8 0 1 42.677 42.677 2 0.0083263 10718 TMT1-7 117.17 14.189 432.74 590.83 527.47 382 507.97 688 409 591 538 387 525 659 1 1 1 1 1 1 45003 2060 2407 2048 3283 4285 4285 1 AVLQFTPASWTYVR Unmodified 1637.8566 0.85657723 1162 P48651-3;P48651-2;P48651 PTDSS1 Phosphatidylserine synthase 1 yes no 0 0 0 0 0 9 0 1 72.086 72.086 3 0.00035663 20519 TMT1-8 68.513 37.963 30.699 51.752 26.465 37.119 34.667 37.387 29 51 29 36 36 36 1 1 1 1 1 1 6119.4 2061 1162 2049 3284 4286 4286 1 AVLQWTK Unmodified 844.48069 0.48068833 2413 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 0 0 9 0 1 55.337 55.337 2 0.01221 13856 TMT1-8 113.89 55.338 77.353 124.68 58.447 90.062 82.149 137.3 73 123 65 87 87 131 1 1 1 1 1 1 10114 2062 2413 2050 3285 4287 4287 1 AVLTCSEQDGSPPSEYTWFK Unmodified 2301.026 0.025963339 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 6 0 1 68.295 68.295 3 2.793E-13 21334 TMT1-5 104.45 90.195 199.1 221.74 253.25 163.21 224.78 302.73 188 225 254 167 232 290 2 2 2 2 2 2 44631 2063 3046 2051 3286 4288;4289 4288 2 AVLTIDEK Unmodified 887.4964 0.49639797 407 P01009 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 0 0 0 0 0 5 0 1 51.084 51.084 2 0.0041482 14481 TMT1-4 127.12 103.59 145.57 244.1 213.82 149.79 191.7 187.48 138 242 218 152 196 181 1 1 1 1 1 1 74205 2064 407 2052 3287 4290 4290 1 AVLVDLEPGTMDSIR Unmodified 1614.8287 0.8287075 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 0 0 0 4.17 1.57 1 2 2 1 68.376 68.376 2;3 4.2695E-19 21544 TMT1-3 159 147.95 423.09 512.55 411.5 444.26 412.67 638.48 399 515 429 436 435 610 4 4 4 4 4 4 413940 2065 2650 2053 3288;3289;3290;3291;3292;3293 4291;4292;4293;4294;4295;4296;4297 4293 7 AVLVDLEPGTMDSIR Oxidation (M) 1630.8236 0.82362212 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 1 0 0 4 0 1 62.386 62.386 3 0.0056686 19098 TMT1-3 64.244 43.511 30.348 65.887 73.357 34.184 42.115 68.088 29 65 73 36 44 65 1 1 1 1 1 1 44658 2066 2650 2053 3294 4298 4298 305 1 AVLVDLEPGTMDSVR Unmodified 1600.8131 0.81305744 1493;1932 P68371;P04350;Q3ZCM7 TUBB4B;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain no no 0 0 0 0 0 4.5 0.5 1 1 65.677 65.677 2;3 1.4377E-34 20366 TMT1-3 168.98 112.2 68.931 79.309 69.563 96.904 89.97 113.63 65 80 73 94 94 109 1 1 1 1 1 1 39744 2067 1493;1932 2054 3295;3296 4299;4300 4299 2 AVMDDFAAFVEK Unmodified 1341.6275 0.6274885 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 5.6 1.02 1 1 2 1 77.665 77.665 2;3 1.3015E-13 24944 TMT1-5 175.15 152.24 1026.9 1640.8 944.31 1031.9 1245.4 1556.2 970 1622 1011 1017 1287 1492 10 10 10 10 10 9 283750 + 2068 28 2055 3297;3298;3299;3300;3301 4301;4302;4303;4304;4305;4306;4307;4308;4309;4310 4309 10 AVMDDFAAFVEK Oxidation (M) 1357.6224 0.62240312 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 1 0 0 5.5 0.5 1 1 67.691 67.691 3 0.00018271 20886 TMT1-4 100.93 87.252 123.82 198.16 121.51 148.93 123.15 174.51 117 196 130 145 130 167 2 2 2 2 2 2 25591 + 2069 28 2055 3302;3303 4311;4312 4311 3 2 AVMGIFSLVTGK Unmodified 1221.6791 0.67913014 2010 Q6IA69-2;Q6IA69 NADSYN1 Glutamine-dependent NAD(+) synthetase yes no 0 0 0 0 0 9 0 1 83.494 83.494 2 0.0013346 24897 TMT1-8 89.827 60.083 0 46.354 27.616 22.011 20.703 37.785 0 44 29 22 22 36 0 1 1 1 1 1 2568.9 2070 2010 2056 3304 4313 4313 1 AVMHFLVNHVK Unmodified 1293.7016 0.70159692 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 2 50.475 50.475 3;4 7.8494E-18 11953 TMT1-8 182.65 140.05 299.03 526.52 331.18 299.56 340.99 482.76 283 519 349 298 355 462 2 2 2 2 2 2 26963 2071 68 2057 3305;3306 4314;4315 4315 2 AVMIDLEPTVVDEVR Unmodified 1684.8706 0.87057232 2783 Q9NY65 TUBA8 Tubulin alpha-8 chain yes yes 0 0 0 0 0 3.33 0.471 2 1 71.253 71.253 2;3 2.8564E-19 22536 TMT1-3 161.76 131.62 169.88 172.13 156.46 147.26 159.29 251.29 160 175 161 146 167 240 4 4 4 4 4 4 51108 2072 2783 2058 3307;3308;3309 4316;4317;4318;4319 4318 4 AVNPFLADVDK Unmodified 1187.6186 0.61863837 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 6 0 1 62.902 62.902 2 0.0066205 19252 TMT1-5 83.775 42.658 53.795 72.463 94.588 56.147 85.578 82.838 51 73 94 58 87 80 1 1 1 1 1 1 7790.1 2073 1744 2059 3310 4320 4320 1 AVNSVASTTGAPPWANLVSILEEK Unmodified 2453.2802 0.28020419 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 90.986 90.986 3 8.496E-10 29361 TMT1-7 87.511 72.741 62.483 79.721 70.928 66.444 77.995 76.658 59 80 73 66 80 74 3 3 3 3 3 3 13519 2074 3042 2060 3311 4321;4322;4323 4322 3 AVNVYSTSITQETMSR Acetyl (N-term) 1827.8673 0.86727785 1862 Q15555-5 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes yes 1 0 0 0 0 3 0 1 63.308 63.308 2 0.0001273 20529 TMT1-2 56.569 52.417 23.466 21.74 5.0984 23.635 5.6927 15.828 22 22 7 22 7 15 1 1 1 1 1 1 7169.6 2075 1862 2061 3312 4324 4324 1 AVNVYSTSVTSDNLSR Acetyl (Protein N-term) 1753.8483 0.84825697 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 1 0 0 0 3 0 1 58.405 58.405 3 0.0010594 18614 TMT1-2 49.993 35.202 15.936 14.647 14.255 22.798 21.18 22.848 15 15 15 22 22 22 1 1 1 1 1 1 16641 2076 1868 2062 3313 4325 4325 1 AVNYFSK Unmodified 827.41775 0.41775372 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 0 1 48.769 48.769 3 0.0052983 13120 TMT1-7 91.906 54.431 274.22 378.71 298.73 209.63 343.97 333.44 259 378 307 214 349 322 1 1 1 1 1 1 16330 2077 1540 2063 3314 4326 4326 1 AVPDAVESR Unmodified 942.47706 0.47705951 740 P16284-3;P16284-2;P16284 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 3 0 1 35.994 35.994 2 0.0020089 9704 TMT1-2 108.3 84.182 46.742 34.318 49.889 67.308 40.592 68.132 44 36 51 65 44 65 1 1 1 1 1 1 7952.8 2078 740 2064 3315 4327 4327 1 AVPDSER Unmodified 772.37153 0.37153181 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 0 2 0 1 26.21 26.21 2 0.018037 5508 TMT1-1 99.139 63.89 54.288 33.901 44.39 20.439 51.139 36.917 51 36 44 22 51 36 1 1 1 1 1 1 4017.3 2079 86 2065 3316 4328 4328 1 AVPEGHEYYR Unmodified 1219.5622 0.56218613 940 P29597 TYK2 Non-receptor tyrosine-protein kinase TYK2 yes yes 0 0 0 0 0 3 0 1 31.968 31.968 3 0.0022673 8123 TMT1-2 56.043 35.071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2080 940 2066 3317 4329 4329 1 AVPEHAAR Unmodified 849.4457 0.4456998 313 O75935;O75935-2 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 0 3 0 1 20.5 20.5 3 0.0058802 3591 TMT1-2 81.548 43.31 46.779 43.055 36.283 20.918 51.337 30.515 44 44 37 22 51 30 2 2 2 2 2 2 5033.8 2081 313 2067 3318 4330;4331 4330 2 AVPGAPELLER Unmodified 1150.6346 0.63462279 2409 Q96GD0 PDXP Pyridoxal phosphate phosphatase yes yes 0 0 0 0 0 4 0 1 54.282 54.282 2 0.0041368 15963 TMT1-3 61.765 30.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2082 2409 2068 3319 4332 4332 1 AVPKEDIYSGGGGGGSR Unmodified 1605.7747 0.7746981 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 1 5 0 1 39.362 39.362 3 0.00024334 9808 TMT1-4 75.97 68.246 92.282 123.39 75.071 81.275 89.883 137.08 87 123 80 80 94 131 1 1 1 1 1 1 9897.5 2083 1675 2069 3320 4333 4333 1 AVPLAGFGYGLPISR Unmodified 1516.8402 0.84019889 1829 Q15118;Q15118-2 PDK1 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial yes no 0 0 0 0 0 9 0 1 72.614 72.614 3 0.00034976 20697 TMT1-8 64.499 48.246 30.554 51.35 51.06 19.913 57.943 52.713 29 51 51 22 58 51 1 1 1 1 1 1 5797 2084 1829 2070 3321 4334 4334 1 AVPLALALISVSNPR Unmodified 1519.9086 0.9086128 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 9 0 2 80.75 80.75 2;3 1.0349E-30 23833 TMT1-8 181.31 147.42 46.656 50.268 50.848 48.601 44.243 47.774 44 51 52 48 46 46 2 2 2 2 2 2 28177 2085 1683 2071 3322;3323 4335;4336 4335 2 AVPLIHQEGNR Unmodified 1232.6626 0.66256887 46 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 0 6 0 1 35.809 35.809 3 0.00016609 8500 TMT1-5 101.3 68.975 123.23 129.42 98.794 71.463 129.62 119.96 116 131 102 73 131 116 1 1 1 1 1 1 11984 2086 46 2072 3324 4337 4337 1 AVPLNASK Unmodified 798.45995 0.45995289 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 0 7 0 1 41.7 41.7 2 0.03602 10212 TMT1-6 78.516 19.599 68.815 102.73 69.175 74.087 83.947 106.34 65 102 73 73 87 102 1 1 1 1 1 1 12578 2087 2813 2073 3325 4338 4338 1 AVPPNNSNAAEDDLPTVELQGVVPR Unmodified 2601.3035 0.30345883 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 3.6 0.49 2 3 67.26 67.26 3;4 9.6332E-31 20707 TMT1-3 136.62 129.34 489.37 662.67 520.31 441.25 576.87 612.92 462 662 535 442 591 590 15 16 14 16 16 15 235690 2088 393 2074 3326;3327;3328;3329;3330 4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354 4348 16 AVPTDEAR Unmodified 857.4243 0.42429566 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 2 0.816 1 1 1 29.014 29.014 2 3.9256E-12 6742 TMT1-1 180.18 124.57 619.22 851.94 703.8 665.69 672.59 845.33 585 851 728 659 700 811 6 6 6 6 6 6 120870 2089 1880 2075 3331;3332;3333 4355;4356;4357;4358;4359;4360 4358 6 AVPTGDASK Unmodified 844.42905 0.42904669 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 1.87 1 1 1 1 34.968 34.968 2;3 0.00041607 8066 TMT1-4 138.4 63.183 2002.7 962.44 1625.2 1172.8 1707.4 1194.2 1880 1057 1613 1191 1723 1166 5 5 5 5 5 5 327520 2090 831 2076 3334;3335;3336;3337 4361;4362;4363;4364;4365;4366 4364 6 AVQADGQVK Unmodified 914.48214 0.48214489 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 5 0 1 34.7 34.7 2 0.00020543 7937 TMT1-4 145.72 40.156 130.76 105.24 115.06 77.997 137.46 96.282 123 109 116 80 138 94 1 1 1 1 1 1 15087 2091 2267 2077 3338 4367 4367 1 AVQASIEK Unmodified 844.46543 0.46543219 2177 Q8N490-4;Q8N490-3;Q8N490 PNKD Probable hydrolase PNKD yes no 0 0 0 0 0 5 0 1 40.154 40.154 2 0.0066364 10118 TMT1-4 104.2 67.628 84.146 130.8 173.86 137.72 146.44 181.31 80 131 174 138 152 174 1 1 1 1 1 1 10692 2092 2177 2078 3339 4368 4368 1 AVQEIMQEK Unmodified 1074.5379 0.53794521 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 5 0 1 51.287 51.287 2 0.00035028 14514 TMT1-4 104.22 37.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2093 842 2079 3340 4369 4369 1 AVQFTEEK Unmodified 950.47091 0.4709115 2984;2723 Q9Y371;Q9Y371-2;Q9NR46;Q9NR46-2 SH3GLB1;SH3GLB2 Endophilin-B1;Endophilin-B2 no no 0 0 0 0 0 4.5 0.5 1 1 44.609 44.609 2 0.00056537 12195 TMT1-3 116.05 47.629 107.88 152.21 134.1 124.39 109.36 182.36 102 152 138 123 116 174 1 1 1 1 1 1 24899 2094 2984;2723 2080 3341;3342 4370;4371 4370 2 AVQLYQQTANVFENEER Unmodified 2037.9756 0.97558275 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 4 0 1 63.397 63.397 3 0.0005575 19552 TMT1-3 52.644 46.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2095 2490 2081 3343 4372 4372 1 AVQMDELVPLGELTK Unmodified 1641.8648 0.86475866 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5.5 0.5 1 1 75.773 75.773 3 5.8745E-05 24282 TMT1-5 85.734 65.895 100.14 77.448 54.991 58.667 77.07 113.99 94 80 58 58 80 109 1 1 1 1 1 1 18029 2096 2066 2082 3344;3345 4373;4374 4374 2 AVQPGETYTYK Unmodified 1255.6085 0.60846762 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 5 0 1 44.123 44.123 3 5.3797E-08 11672 TMT1-4 151.79 120.96 207.91 342.85 292.44 236.62 323.75 307.36 197 340 300 238 330 297 1 1 1 1 1 1 58181 2097 666 2083 3346 4375 4375 1 AVQQPDGLAVLGIFLK Unmodified 1667.961 0.9610423 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 9 0 1 87.883 87.883 3 8.7728E-20 26634 TMT1-8 136.81 110.7 671.56 791.38 615.28 664.05 865.83 764.13 633 796 643 656 882 740 3 3 3 3 3 3 119390 2098 406 2084 3347 4376;4377;4378 4377 3 AVQSLDK Unmodified 759.41267 0.41266834 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 0 5.5 0.5 1 1 39.098 39.098 2 0.0070195 9729 TMT1-4 130.27 45.704 511.93 595.59 559.36 597.99 603.77 594.66 483 601 577 588 623 574 2 2 2 2 2 2 129090 2099 150 2085 3348;3349 4379;4380 4379 2 AVQSLDKNGVDLLMK Unmodified 1629.876 0.87599205 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 1 7 0 1 61.422 61.422 3 0.0091097 18053 TMT1-6 56.774 35.24 122.83 159.62 140.13 147.36 147.69 193 116 160 145 145 154 185 1 1 1 1 1 1 11192 2100 150 2086 3350 4381 4381 1 AVQVHQDTLR Unmodified 1165.6204 0.62036971 2898;2904 Q9UKV8-2;Q9UKV8;Q9UL18 AGO2;AGO1 Protein argonaute-2;Protein argonaute-1 no no 0 0 0 0 0 4 0 1 30.6 30.6 3 0.0062065 6580 TMT1-3 69.721 41.838 61.623 64.196 48.364 59.614 47.726 83.918 58 65 51 58 51 80 1 1 1 1 1 1 5386.7 2101 2898;2904 2087 3351 4382 4382 1 AVQYEEK Unmodified 865.41815 0.41814765 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 4 0 1 36.594 36.594 2 8.3403E-05 8973 TMT1-3 122.74 63.825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2102 288 2088 3352 4383 4383 1 AVQYEEKNPCR Unmodified 1392.6456 0.64559818 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 1 5 0 1 34.199 34.199 3 0.0029829 7726 TMT1-4 79.82 52.411 99.783 107.74 90.07 104.84 67.874 106.8 94 109 94 102 73 102 1 1 1 1 1 1 6609 2103 288 2089 3353 4384 4384 1 AVSDASAGDYGSAIETLVTAISLIK Unmodified 2451.2745 0.27445011 1896 Q16630-3;Q16630;Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 0 8.5 0.5 1 1 106.76 106.76 4 1.7265E-14 33760 TMT1-7 97.253 81.831 33.976 40.901 25.825 34.983 33.997 55.528 32 41 27 34 35 53 5 5 4 5 4 5 5028.8 2104 1896 2090 3354;3355 4385;4386;4387;4388;4389 4385 5 AVSDSFGPGEWDDR Unmodified 1536.6481 0.6481006 2354 Q969X1 TMBIM1 Protein lifeguard 3 yes yes 0 0 0 0 0 2.5 0.5 1 1 55.905 55.905 3 3.2793E-15 17577 TMT1-2 139.7 125.62 53.816 87.633 78.132 65.072 69.959 99.274 51 87 80 65 73 95 2 2 2 2 2 2 28677 2105 2354 2091 3356;3357 4390;4391 4391 2 AVSDSFGPGEWDDRK Unmodified 1664.7431 0.74306362 2354 Q969X1 TMBIM1 Protein lifeguard 3 yes yes 0 0 0 0 1 4 0 1 50.859 50.859 3 5.8021E-05 14611 TMT1-3 88.706 81.298 99.638 138.64 88.243 104.26 104.53 136.66 94 138 94 102 109 131 1 1 1 1 1 1 12306 2106 2354 2092 3358 4392 4392 1 AVSDWIDEQEK Unmodified 1318.6041 0.60411052 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 4 0 1 58.775 58.775 3 0.0050227 17723 TMT1-3 68.132 42.915 53.871 95.34 62.428 42.888 78.858 83.03 51 94 65 44 80 80 1 1 1 1 1 1 20366 2107 1655 2093 3359 4393 4393 1 AVSGASAGDYSDAIETLLTAIAVIK Unmodified 2435.2795 0.27953549 2187 Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 0 9 0 1 108.62 108.62 4 2.1385E-11 33696 TMT1-8 79.635 62.354 0 27.165 29.878 21.379 47.128 30.635 0 26 30 22 47 30 0 2 2 2 2 2 1957.8 2108 2187 2094 3360 4394;4395 4394 2 AVSGKEPR Unmodified 842.46102 0.46101552 162 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 0 1 6 0 1 25.779 25.779 3 0.030631 4688 TMT1-5 65.156 26.35 77.248 109.28 89.129 126.45 142.56 96.136 73 109 94 123 145 94 1 1 1 1 1 1 4518.5 2109 162 2095 3361 4396 4396 1 AVSIIECDMNVDFDAPLGYKEPER Unmodified 2767.2833 0.28331701 2326 Q92890-3;Q92890;Q92890-1 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 1 5 0 1 72.951 72.951 4 1.5446E-06 23003 TMT1-4 70.917 36.697 15.857 21.981 21.42 22.11 35.064 45.903 15 22 22 22 36 44 1 1 1 1 1 1 3529 2110 2326 2096 3362 4397 4397 1 AVSISPTNVILTWK Unmodified 1527.8661 0.86607929 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 9 0 2 75.003 75.003 2;3 2.1761E-19 21618 TMT1-8 165.09 100.44 92.261 108.22 91.521 72.483 98.422 113.39 87 109 94 73 101 109 2 2 2 2 2 2 41656 2111 1658 2097 3363;3364 4398;4399 4398 2 AVSNEIVR Unmodified 886.48723 0.48723027 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 2.5 1.5 1 1 35.827 35.827 2 0.021116 8546 TMT1-3 88.177 27.495 279.24 599 530.14 376.95 593.54 578.96 266 589 540 384 603 559 2 2 2 2 2 2 151210 2112 489 2098 3365;3366 4400;4401 4401 2 AVSNINTLLDK Unmodified 1186.6558 0.65575216 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-6 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 7 0 1 60.88 60.88 3 0.0011928 17801 TMT1-6 84.718 32.471 54.121 42.07 65.606 43.26 49.027 67.891 51 44 65 44 51 65 1 1 1 1 1 1 5659.9 2113 1977 2099 3367 4402 4402 1 AVSPLPYLR Unmodified 1014.5862 0.58621603 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 1 56.399 56.399 2 0.0014428 16069 TMT1-7 119.41 83.913 309.72 452.26 402.11 360.55 418.57 457.1 293 451 413 359 431 440 2 2 2 2 2 2 80874 2114 471 2100 3368 4403;4404 4403 2 AVSSAIAQLLGEVAQGNENYAGIAAR Unmodified 2572.3245 0.32452862 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.12 3.02 2 2 3 1 89.544 89.544 3;4 4.1809E-63 29139 TMT1-7 174.85 157.35 464.3 648.39 584.78 447.39 510.8 639.95 439 648 597 450 529 614 12 12 12 12 12 12 1193300 2115 3010 2101 3369;3370;3371;3372;3373;3374;3375;3376 4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416 4412 12 AVSTCAHLFWSGR Unmodified 1490.7089 0.70886714 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 49.602 49.602 3 7.6193E-05 11630 TMT1-8 81.619 55.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2116 2444 2102 3377 4417 4417 1 AVSTGGGGHVQLLR Unmodified 1350.7368 0.73679645 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 8 1 1 1 37.6 37.6 3 1.139E-27 8628 TMT1-6 185.9 150.25 207.72 274.15 202.4 188.61 255.72 281.59 196 274 211 188 262 271 2 2 2 2 2 2 78875 2117 772 2103 3378;3379 4418;4419 4418 2 AVSTGLPHMIQELQNHIHDEGLR Unmodified 2594.3024 0.30235339 1729 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 0 8.5 0.5 1 1 89.969 89.969 3 0.0034193 29158 TMT1-7 41.521 19.68 96.236 130.8 125.61 77.945 106.8 105.68 91 131 127 80 109 102 2 2 2 2 2 2 69273 2118 1729 2104 3380;3381 4420;4421 4420 2 AVSTGVQAGIPMPCFTTALSFYDGYR Unmodified 2808.3251 0.32512225 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 9 0 1 84.549 84.549 3 1.5687E-18 25317 TMT1-8 90.694 82.304 15.981 14.772 6.6071 0 29.301 30.078 15 15 7 0 29 29 1 1 1 0 1 1 10032 2119 1260 2105 3382 4422 4422 1 AVSVNEGYK Unmodified 965.48181 0.48181054 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 5 0 1 40.651 40.651 2 0.0050696 10406 TMT1-4 98.048 59.026 54.281 50.071 31.904 84.643 47.637 53.007 51 51 36 80 51 51 1 1 1 1 1 1 11068 2120 2596 2106 3383 4423 4423 1 AVTAYSPEDEK Unmodified 1208.5561 0.55609769 218 O60268-2;O60268-3;O60268 KIAA0513 Uncharacterized protein KIAA0513 yes no 0 0 0 0 0 3 0 1 43.124 43.124 2 2.8353E-08 12548 TMT1-2 156.48 102.73 38.143 34.863 52.008 19.984 51.16 36.916 36 36 51 22 51 36 1 1 1 1 1 1 4765.8 2121 218 2108 3384 4424 4424 1 AVTDEEPFLIFANR Unmodified 1620.8148 0.814772 1614 Q07954 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 0 0 0 0 0 5 0 1 73.575 73.575 2 0.0026762 23241 TMT1-4 76.143 43.619 23.335 28.932 20.947 22.537 13.863 23.056 22 29 22 22 15 22 1 1 1 1 1 1 5545.1 2122 1614 2109 3385 4425 4425 1 AVTDSINQLITMCTQQAPGQK Unmodified 2303.125 0.12496588 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 2.53 1 3 1 73.356 73.356 3;4 3.8784E-40 22727 TMT1-7 172.95 141.84 952.49 1323.8 917.7 850.17 995.53 1428.8 899 1319 961 845 1036 1367 10 10 10 10 10 10 277440 2123 3010 2110 3386;3387;3388;3389;3390 4426;4427;4428;4429;4430;4431;4432;4433;4434;4435 4433 10 AVTDSINQLITMCTQQAPGQK Oxidation (M) 2319.1199 0.1198805 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 8 0 1 68.615 68.615 4 3.0687E-14 20983 TMT1-7 113.54 95.247 261.33 264.96 217.46 196.89 232.63 272.65 246 269 225 196 240 262 2 2 2 2 2 2 40673 2124 3010 2110 3391 4436;4437 4437 328 2 AVTEGAQAVEEPSIC Unmodified 1559.7137 0.71373732 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 2 0 1 56.22 56.22 3 2.6676E-11 17340 TMT1-1 127.71 108.97 23.246 28.684 36.169 21.22 35.655 29.897 22 29 36 22 36 29 1 1 1 1 1 1 8951.1 2125 929 2111 3392 4438 4438 1 AVTELNEPLSNEDR Unmodified 1585.7584 0.75837933 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 2.2 0.748 1 2 2 48.446 48.446 2;3 3.2652E-65 14317 TMT1-1 233.46 216.44 284.82 356.03 339.45 247.78 278.7 355.55 269 358 345 250 289 341 5 5 5 5 5 5 255010 2126 1588 2112 3393;3394;3395;3396;3397 4439;4440;4441;4442;4443 4440 5 AVTELNEPLSNEDRNLLSVAYK Unmodified 2474.2653 0.26528241 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 1 5 0 2 65.193 65.193 3;4 2.6584E-11 19969 TMT1-4 82.406 62.509 92.464 85.046 77.024 89.067 76.222 98.029 87 87 80 87 80 94 1 1 1 1 1 1 12200 2127 1588 2113 3398;3399 4444;4445 4445 2 AVTEQGAELSNEER Unmodified 1531.7114 0.71142914 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 1.5 0.5 1 1 37.94 37.94 3 2.0399E-34 10129 TMT1-1 193.11 143.48 473.92 369.88 466.6 243.93 370.75 299.63 446 385 464 255 375 291 3 3 3 3 3 3 129030 2128 909 2114 3400;3401 4446;4447;4448 4447 3 AVTEQGHELSNEER Unmodified 1597.7332 0.73322721 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 2.5 1.12 1 1 1 1 29.599 29.599 3 1.1196E-95 6921 TMT1-1 255.91 202.83 379.17 522.23 391.6 445.67 517 614.19 358 521 411 438 534 590 5 5 5 5 5 5 143190 2129 984 2115 3402;3403;3404;3405 4449;4450;4451;4452;4453 4450 5 AVTFIDLTTLSGDDTSSNIQR Unmodified 2253.1125 0.11247016 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 6 0 1 75.26 75.26 3 0.034895 24108 TMT1-5 34.405 17.72 15.747 45.42 20.005 22.317 28.531 22.638 15 44 22 22 29 22 1 1 1 1 1 1 4144.3 2130 2982 2116 3406 4454 4454 1 AVTGYKDPYSGK Unmodified 1284.635 0.63501672 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 7 0 1 42.808 42.808 3 0.028627 10649 TMT1-6 53.448 30.212 91.915 146.12 117.55 141.62 117.47 136.29 87 145 123 138 123 131 1 1 1 1 1 1 15320 2131 1833 2117 3407 4455 4455 1 AVTGYRDPYTEQTISLFQAMK Unmodified 2418.1889 0.18894634 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 8 0 1 70.042 70.042 4 2.7223E-07 21507 TMT1-7 84.107 65.226 46.338 80.682 78.569 65.479 46.943 98.864 44 80 80 65 51 94 1 1 1 1 1 1 6572.6 2132 1833 2118 3408 4456 4456 1 AVTIFIR Unmodified 818.50142 0.50142377 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 9 0 1 55.926 55.926 2 0.0093118 14104 TMT1-8 125.08 35.381 209.17 288.24 308.3 318.46 222.51 374.21 198 289 315 312 239 357 1 1 1 1 1 1 35078 2133 1161 2119 3409 4457 4457 1 AVTLHDQGTAQWADLSSQFYLR Unmodified 2506.2241 0.2240863 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 7 0 2 67.946 67.946 3;4 1.3168E-17 20578 TMT1-6 110.61 90.358 115.59 129.59 119.48 117.7 104.68 114.27 109 131 123 116 109 110 3 3 3 3 3 3 57121 2134 845 2120 3410;3411 4458;4459;4460 4459 3 AVTNHSVYCSTK Unmodified 1365.6347 0.63469914 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 6 0 1 32.489 32.489 3 0.00016462 7216 TMT1-5 94.122 77.868 53.997 56.837 73.794 33.882 56.788 67.67 51 58 73 36 58 65 1 1 1 1 1 1 5151.2 2135 2098 2121 3412 4461 4461 1 AVTPNQVR Unmodified 883.48756 0.48756462 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 5 0 1 29.875 29.875 2 0.045885 6052 TMT1-4 75.738 43.803 23.162 36.005 44.072 28.253 43.451 37.136 22 36 44 29 44 36 1 1 1 1 1 1 2273.6 2136 2256 2122 3413 4462 4462 1 AVTQALNR Unmodified 871.48756 0.48756462 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 2.58 1 1 1 1 1 1 34.837 34.837 2 5.939E-08 8068 TMT1-5 174.69 70.779 2303.6 2581.9 2701 2108.8 2344.1 3027.7 2174 2615 2737 2117 2433 2903 7 7 7 7 7 7 637410 2137 3010 2123 3414;3415;3416;3417;3418;3419 4463;4464;4465;4466;4467;4468;4469 4465 7 AVTTNQWHR Unmodified 1111.5523 0.55229014 3066 Q9Y6Y8-2;Q9Y6Y8 SEC23IP SEC23-interacting protein yes no 0 0 0 0 0 7 0 1 30.965 30.965 3 0.015096 6055 TMT1-6 61.679 42.722 46.919 43.446 12.366 22.911 21.175 22.848 44 44 15 22 22 22 1 1 1 1 1 1 1261 2138 3066 2124 3420 4470 4470 1 AVVFLEPQWYR Unmodified 1406.7347 0.73467118 574 P08637 FCGR3A Low affinity immunoglobulin gamma Fc region receptor III-A yes yes 0 0 0 0 0 8 0 1 71.619 71.619 2 0.00026413 22083 TMT1-7 105.2 68.8 46.4 95.964 55.2 35.114 50.171 45.472 44 94 58 36 51 44 1 1 1 1 1 1 10279 2139 574 2125 3421 4471 4471 1 AVVGEEALTSDDLLYLEFLQK Unmodified 2352.2101 0.21005894 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 5 0 1 89.559 89.559 4 0.024281 29531 TMT1-4 35.389 19.797 15.857 21.981 21.403 22.505 14.121 15.587 15 22 22 22 15 15 1 1 1 1 1 1 2450.1 2140 828 2126 3422 4472 4472 1 AVVGVVAGGGR Unmodified 940.54541 0.54541385 1460 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 0 7 0 1 41.167 41.167 2 0.0060527 10084 TMT1-6 84.916 51.177 54.142 57.239 49.181 51.499 69.814 121.66 51 58 51 51 73 116 1 1 1 1 1 1 10056 2141 1460 2127 3423 4473 4473 1 AVVHTHLLNPEWLVNYFGSLSVEDSLECLR Unmodified 3496.7449 0.74492488 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8.5 0.5 1 1 86.759 86.759 4;5 1.6783E-13 27927 TMT1-7 85.19 85.19 55.214 28.916 73.33 81.774 68.898 107.83 52 30 73 80 73 103 3 2 3 3 3 3 10697 2142 1540 2128 3424;3425 4474;4475;4476 4474 3 AVVILVTDVSVDSVDAAADAAR Unmodified 2156.1325 0.13247732 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 85.35 85.35 3 2.2679E-17 27923 TMT1-4 106.03 88.947 70.009 65.218 80.706 59.946 64.878 77.033 66 67 81 59 66 74 4 4 4 3 3 4 7164.4 2143 471 2129 3426 4477;4478;4479;4480 4479 4 AVVISGAGK Unmodified 800.4756 0.47560295 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 8 0 1 43.01 43.01 2 1.0307E-05 10827 TMT1-7 157.86 72.648 284.07 573.22 461.89 413.12 514.16 557.77 270 564 477 412 528 537 1 1 1 1 1 1 40828 2144 1663 2130 3427 4481 4481 1 AVVIVDDR Unmodified 885.49198 0.4919813 857;1837 P23246;P23246-2;Q15233;Q15233-2 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 0 0 0 0 0 3.5 0.5 1 1 43.189 43.189 2 0.002037 12660 TMT1-2 138.83 64.851 819.04 1190.1 737.83 759.82 964.49 991.57 773 1182 783 752 988 956 3 3 3 3 3 3 136220 2145 857;1837 2131 3428;3429 4482;4483;4484 4483 3 AVVLAANHFGR Unmodified 1153.6356 0.63562584 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 42.581 42.581 3 1.2494E-11 8973 TMT1-8 157.59 99.344 436.21 514.48 370.37 367.68 488.75 596.87 411 517 388 365 503 573 1 1 1 1 1 1 22206 2146 1702 2132 3430 4485 4485 1 AVVMTPVPLFSK Unmodified 1287.7261 0.72608033 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 9 0 1 71.986 71.986 3 0.0067819 20435 TMT1-8 57.019 23.795 61.533 63.948 63.569 58.687 48.831 52.973 58 65 65 58 51 51 1 1 1 1 1 1 4113.2 2147 119 2133 3431 4486 4486 1 AVVPSYIPLVK Unmodified 1184.7169 0.71689585 1040 P36551 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 0 0 0 0 0 9 0 1 67.197 67.197 2 6.2181E-06 18566 TMT1-8 114.97 57.37 46.406 64.684 80.584 41.79 79.715 59.553 44 65 80 44 80 58 1 1 1 1 1 1 7102.3 2148 1040 2134 3432 4487 4487 1 AVVQLKPR Unmodified 909.57599 0.5759857 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 9 0 1 39.327 39.327 3 0.0014888 7910 TMT1-8 112.37 33.224 458.95 600.05 442.76 349.37 477.58 581.2 433 600 459 352 491 558 1 1 1 1 1 1 23108 2149 1833 2135 3433 4488 4488 1 AVVQVFEGTSGIDAK Unmodified 1519.7882 0.7882229 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 6 0 1 63.214 63.214 3 1.1833E-07 19320 TMT1-5 106.82 71.297 130.21 173.85 150.08 98.375 163.4 196.81 123 174 153 101 167 189 2 2 2 2 2 2 26982 2150 828 2136 3434 4489;4490 4489 2 AVVVCPK Unmodified 771.4313 0.43129529 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 8 0 1 41.562 41.562 2 0.00292 10253 TMT1-7 140.79 106.71 146.26 196.38 137.84 146.65 192.35 172.53 138 196 145 145 196 167 1 1 1 1 1 1 15868 2151 1545 2137 3435 4491 4491 1 AVVVNAAQLASYSQSK Unmodified 1634.8628 0.86278482 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 0 8.5 0.5 1 1 59.818 59.818 3 4.7413E-09 17505 TMT1-7 113.59 92.029 185.54 231.34 179.04 239 207.7 272.3 175 232 189 232 218 261 2 2 2 2 2 2 31283 2152 1575 2138 3436;3437 4492;4493 4492 2 AVVVTDGER Unmodified 944.49271 0.49270958 859 P23368;P23368-2;Q16798-2;Q16798 ME2;ME3 NAD-dependent malic enzyme, mitochondrial;NADP-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 35.376 35.376 2 0.00030757 9372 TMT1-2 110.12 56.366 30.559 43.809 56.603 75.654 40.465 60.673 29 44 58 73 44 58 1 1 1 1 1 1 20611 2153 859 2139 3438;3439 4494;4495 4495 2 AVVYSNTIQSIMAIVK Unmodified 1735.9542 0.95424237 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 9 0 1 84.354 84.354 3 1.0803E-23 25307 TMT1-8 156.24 114.86 115.09 206.99 137.67 139.73 154.17 197.07 109 204 145 138 160 189 2 2 2 2 2 2 42021 2154 480 2140 3440 4496;4497 4497 2 AVWLPAMK Unmodified 914.50479 0.50479459 1637 Q10567-3;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 64.438 64.438 2 0.0082894 17490 TMT1-8 94.163 64.787 337.34 540.25 373.31 375.29 365.08 441.57 319 535 392 370 380 424 1 1 1 1 1 1 43495 2155 1637 2141 3441 4498 4498 1 AVWLPAVK Unmodified 882.53272 0.5327239 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 9 0 1 63.119 63.119 2 0.0013515 16923 TMT1-8 146.21 68.464 246.58 330.6 296.29 259.46 259.39 353.97 233 331 304 258 271 339 2 2 2 2 2 2 33007 2156 1467 2142 3442 4499;4500 4499 2 AVWNVLGNLSEIQGEVLSFDGNR Unmodified 2516.266 0.26595111 2902 Q9UL15;Q9UL15-2 BAG5 BAG family molecular chaperone regulator 5 yes no 0 0 0 0 0 8 0 1 96.479 96.479 3 0.00010659 31481 TMT1-7 48.5 33.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2157 2902 2143 3443 4501 4501 1 AVYDTNPAK Unmodified 977.48181 0.48181054 2797 Q9NZD2 GLTP Glycolipid transfer protein yes yes 0 0 0 0 0 5 0 1 39.134 39.134 2 0.0018916 9705 TMT1-4 110.87 75.516 53.822 95.204 70.767 50.191 70.937 90.718 51 94 73 51 73 87 1 1 1 1 1 1 7844.2 2158 2797 2144 3444 4502 4502 1 AVYLGELPHDQDVVEYIMNQPNVVPR Unmodified 2994.4909 0.49094202 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 6 0 1 78.302 78.302 4 5.5569E-12 25304 TMT1-5 89.946 76.491 23.23 52.382 18.883 37.286 49.815 52.945 22 51 22 36 51 51 1 1 1 1 1 1 9429.7 2159 2789 2145 3445 4503 4503 1 AVYSTNCPVWEEAFR Unmodified 1827.825 0.82501911 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6 0 1 65.791 65.791 2 0.027649 20425 TMT1-5 56.087 31.705 15.982 22.33 0 16.006 20.686 46.314 15 22 0 15 22 44 1 1 0 1 1 1 15758 2160 2525 2146 3446 4504 4504 1 AWAEDVLALVK Unmodified 1213.6707 0.67067394 1542 Q00722-3;Q00722-2;Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 yes no 0 0 0 0 0 7.5 0.5 1 1 83.078 83.078 3 0.00067258 26560 TMT1-7 90.108 50.191 46.513 81.168 48.776 29.21 35.784 45.883 44 80 51 30 37 44 2 2 2 2 2 2 8029.1 2161 1542 2147 3447;3448 4505;4506 4506 2 AWALGQGLECFETSVK Unmodified 1794.8611 0.86107026 2558 Q9BW83-2;Q9BW83 IFT27 Intraflagellar transport protein 27 homolog yes no 0 0 0 0 0 7 0 1 75.115 75.115 3 3.6628E-06 23428 TMT1-6 74.772 56.855 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2162 2558 2148 3449 4507 4507 1 AWALLQK Unmodified 828.48577 0.48577371 1667 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 0 9 0 1 62.097 62.097 2 0.045759 16551 TMT1-8 74.832 34.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2163 1667 2149 3450 4508 4508 1 AWAYYSAVNPEK Unmodified 1397.6616 0.66156582 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 7 0 1 58.703 58.703 2 1.2399E-16 16964 TMT1-6 152.07 107.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 2164 666;31 2150 3451 4509 4509 1 AWCVNCFACSTCNTK Unmodified 1877.7317 0.73172912 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 9 0 1 56.822 56.822 3 3.9452E-27 14461 TMT1-8 165.64 146.32 54.029 33.18 88.6 73.427 57.498 207.3 51 36 87 73 65 196 1 1 1 1 1 1 19932 2165 1149 2151 3452 4510 4510 1 AWDDFFPGSDR Unmodified 1311.552 0.55201537 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 0 0 4.25 1.92 1 2 1 68.983 68.983 2;3 3.2446E-07 21509 TMT1-5 151.22 108 409.67 539.98 479.75 358.5 514.14 478.89 387 541 490 363 523 463 5 5 5 5 5 5 225810 2166 310 2152 3453;3454;3455;3456 4511;4512;4513;4514;4515 4514 5 AWDQEAEGAGPELGLR Unmodified 1697.8009 0.80091285 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 3 0.707 1 2 1 59.113 59.113 2;3 4.4039E-15 18840 TMT1-2 130.61 109.82 147.42 157.69 155.97 131.52 126.06 143.51 139 160 159 131 131 138 4 4 4 4 4 4 37681 2167 2157 2153 3457;3458;3459;3460 4516;4517;4518;4519 4517 4 AWEEYYK Unmodified 987.4338 0.43379771 2361;2334 Q96AE4;Q96AE4-2;Q92945 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 no no 0 0 0 0 0 5 0 1 53.485 53.485 2 0.032499 15343 TMT1-4 89.55 50.402 99.082 207.24 123.6 116.9 134.06 143.28 94 203 131 116 138 138 1 1 1 1 1 1 23602 2168 2361;2334 2154 3461 4520 4520 1 AWELTQK Unmodified 874.45487 0.45486751 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 7 0 1 51.136 51.136 2 0.001379 13942 TMT1-6 147.69 40.399 224.62 212.86 299.58 152.38 247.08 246.66 212 219 296 160 251 238 1 1 1 1 1 1 28858 2169 515 2155 3462 4521 4521 1 AWELYGSPNALVLLIAQEK Unmodified 2114.1412 0.14119151 1160 P48637 GSS Glutathione synthetase yes yes 0 0 0 0 0 8 0 2 91.776 91.776 3;4 8.7246E-10 29771 TMT1-7 97.352 89.906 85.253 57.254 50.069 52.307 117.9 60.596 80 60 52 51 117 60 4 4 4 3 4 4 7939.6 2170 1160 2156 3463;3464 4522;4523;4524;4525 4523 4 AWESLEEAEYRR Unmodified 1537.7161 0.71612058 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 1 3 0 1 49.675 49.675 3 0.00012318 15134 TMT1-2 100.31 70.77 61.465 79.947 61.537 82.747 54.541 67.734 58 80 65 80 58 65 1 1 1 1 1 1 11094 2171 651 2157 3465 4526 4526 1 AWEVDTCR Unmodified 1035.4444 0.44437918 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 4 0 1 42.785 42.785 2 0.026407 11441 TMT1-3 84.368 50.973 233.89 380.56 223.26 205.6 332.57 335.89 221 376 237 206 338 324 1 1 1 1 1 1 26555 2172 1287 2158 3466 4527 4527 1 AWGAVVPLVGK Unmodified 1095.6441 0.64406526 2751 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 0 9 0 1 68.262 68.262 2 1.4367E-06 18980 TMT1-8 128.1 91.079 61.611 56.608 56.801 50.468 100.48 113.33 58 58 58 51 102 109 1 1 1 1 1 1 8026.7 2173 2751 2159 3467 4528 4528 1 AWGESTPLANKPGK Unmodified 1454.7518 0.75177781 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 8 0 1 48.246 48.246 3 0.0029148 12909 TMT1-7 66.485 56.49 145.9 202.92 193.42 128.83 150.46 319.77 138 203 196 131 160 304 1 1 1 1 1 1 16607 2174 666 2160 3468 4529 4529 1 AWGPGLEGGVVGK Unmodified 1225.6455 0.64552182 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.75 2.77 1 2 1 59.107 59.107 2;3 3.7815E-59 17091 TMT1-6 236.33 167.91 3199 4361.6 3631.6 3106.1 3670.2 4652.8 3022 4359 3741 3103 3798 4463 5 5 5 5 5 5 1747400 2175 831 2161 3469;3470;3471;3472 4530;4531;4532;4533;4534 4533 5 AWGPHCEK Unmodified 983.42834 0.42833518 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 6 0 1 33.75 33.75 3 0.002921 7749 TMT1-5 93.143 70.995 507.91 671.32 628.58 497.13 633.07 789.96 480 673 641 500 653 758 2 2 2 2 2 2 80399 2176 1797 2162 3473 4535;4536 4536 2 AWHPEHFVCGGCSTALGGSSFFEK Unmodified 2667.1635 0.16347665 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 0 8 0 1 59.757 59.757 4 7.7584E-07 17482 TMT1-7 72.916 56.616 61.171 110.43 85.002 49.337 71.233 83.247 58 109 87 51 73 80 1 1 1 1 1 1 23439 2177 165 2163 3474 4537 4537 1 AWITNAWEASAAVVFASTDR Unmodified 2165.0542 0.054167421 737 P16219 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 91.04 91.04 3 0.0009987 27853 TMT1-8 53.059 33.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2178 737 2164 3475 4538 4538 1 AWLAGRPER Unmodified 1054.5672 0.56721192 678 P13224;P13224-2 GP1BB Platelet glycoprotein Ib beta chain yes no 0 0 0 0 1 6.75 3.34 1 1 2 37.021 37.021 2;3 0.00032096 8310 TMT1-7 126.82 83.956 709.26 892.11 865.75 755.14 807.93 1018.4 670 897 884 752 839 977 4 4 4 4 4 4 297190 2179 678 2165 3476;3477;3478;3479 4539;4540;4541;4542;4543 4541 5 AWLLFLR Unmodified 917.54871 0.54870831 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 9 0 1 79.376 79.376 2 6.4428E-08 23335 TMT1-8 180 68.992 1936.7 2232.8 2083.1 1674.7 1870.5 2839.7 1827 2254 2127 1678 1955 2714 2 2 2 2 2 2 333660 2180 535 2166 3480 4544;4545 4544 2 AWLTEIHEYAQR Unmodified 1515.747 0.74702678 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 6 0 1 56.75 56.75 3 4.3329E-14 16792 TMT1-5 171.74 159.95 61.391 103.49 53.97 50.902 86.369 66.825 58 102 58 51 87 65 1 1 1 1 1 1 17105 2181 2366 2167 3481 4546 4546 1 AWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVAR Unmodified 4098.1314 0.13136169 688 P13716 ALAD Delta-aminolevulinic acid dehydratase yes yes 0 0 0 0 0 8 0 2 97.758 97.758 4;5 3.9903E-16 31907 TMT1-7 81.82 72.519 26.367 32.507 49.449 9.0609 29.28 18.561 25 33 48 11 29 18 3 3 3 2 3 2 18735 2182 688 2168 3482;3483 4547;4548;4549 4549 3 AWQYLSNSK Unmodified 1095.5349 0.53490874 1940 Q4KMP7 TBC1D10B TBC1 domain family member 10B yes yes 0 0 0 0 0 9 0 1 54.495 54.495 2 0.0012918 13561 TMT1-8 125.56 92.442 26.489 32.847 28.644 14.144 28.907 22.627 25 33 29 15 29 22 1 1 1 1 1 1 2486.8 2183 1940 2169 3484 4550 4550 1 AWRDPDEPVLLEEPVVLALAEK Unmodified 2488.3213 0.32134072 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 1 5 0 2 82.606 82.606 3;4 3.3718E-14 26872 TMT1-4 104.18 90.727 161.38 179.43 135.93 141.02 149 266.51 152 181 138 139 153 254 3 3 2 3 2 3 24219 2184 705 2170 3485;3486 4551;4552;4553 4553 3 AWTVLTEYYK Unmodified 1272.639 0.63903946 163 O43252 PAPSS1 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 0 0 0 0 0 8 0 1 70.549 70.549 3 0.0005523 21649 TMT1-7 98.044 71.926 22.965 59.202 57.517 35.277 34.202 53.39 22 58 58 36 36 51 1 1 1 1 1 1 6070.9 2185 163 2171 3487 4554 4554 1 AWVGGVGNYK Unmodified 1049.5294 0.52942943 146 O15382;O15382-2 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 52.902 52.902 2 0.0027471 12963 TMT1-8 98.009 56.357 54.022 73.096 55.841 50.658 93.416 75.152 51 73 58 51 94 73 1 1 1 1 1 1 5324.7 2186 146 2172 3488 4555 4555 1 AWVWNTHADFADECPKPELLAIR Unmodified 2738.3275 0.32750551 1116 P43487-2;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 1 7.5 0.5 1 1 68.546 68.546 4 8.7397E-37 20887 TMT1-7 146.39 127.28 207.22 290.03 272.37 175.38 330.47 315.7 196 290 276 181 334 305 2 2 2 2 2 2 35662 2187 1116 2173 3489;3490 4556;4557 4557 2 AYAALAALEK Unmodified 1019.5651 0.56514624 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 7 0 2 62.731 62.731 2;3 3.4972E-06 18517 TMT1-6 155.07 130.14 268.92 363.08 300.32 317.07 321.57 385.24 254 363 312 312 334 370 3 3 3 3 3 3 47015 2188 1655 2174 3491;3492 4558;4559;4560 4558 3 AYADFYR Unmodified 904.40792 0.40791731 604 P09669 COX6C Cytochrome c oxidase subunit 6C yes yes 0 0 0 0 0 5 0 1 46.433 46.433 2 0.0022326 12574 TMT1-4 143.02 119.71 468.41 632.29 449.16 525.48 333.69 728.15 442 631 474 511 366 692 1 1 1 1 1 1 82264 2189 604 2175 3493 4561 4561 1 AYAEELASR Unmodified 1008.4876 0.4876242 1930 Q3SXM5;Q3SXM5-2 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 0 0 0 0 0 3 0 1 41.202 41.202 2 0.0056978 11813 TMT1-2 96.668 55.643 77.099 108.86 114.4 94.081 97.963 128.32 73 109 116 94 102 123 1 1 1 1 1 1 13670 2190 1930 2176 3494 4562 4562 1 AYALAFAER Unmodified 1010.5185 0.5185304 1250 P51659 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 0 0 0 0 0 7 0 1 54.07 54.07 2 0.00097118 15131 TMT1-6 85.212 43.103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2191 1250 2177 3495 4563 4563 1 AYAPGGPAYQPVVEAFGTDILHK Unmodified 2400.2114 0.21139634 1667 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 0 6.5 0.5 1 1 73.061 73.061 3;4 4.7077E-10 23257 TMT1-5 74.776 64.853 53.914 87.906 61.432 75.239 47.264 76.469 51 87 65 73 51 73 1 1 1 1 1 1 5496.6 2192 1667 2178 3496;3497 4564;4565 4564 2 AYAQGISR Unmodified 864.44537 0.44536545 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 32.552 32.552 2 0.006527 7265 TMT1-5 71.501 56.739 68.662 124.97 76.147 57.665 63.28 60.022 65 123 80 58 65 58 1 1 1 1 1 1 19491 2193 271 2179 3498;3499 4566;4567 4567 2 AYAQQLTEWAR Unmodified 1335.6571 0.65714914 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 57.117 57.117 2 8.4058E-17 16911 TMT1-5 187.1 153.68 114.79 213.69 183.58 168.72 152.58 204.58 109 211 189 167 160 196 2 2 2 2 2 2 44478 2194 2926 2180 3500;3501 4568;4569 4568 2 AYAYLFK Acetyl (Protein N-term) 916.46945 0.46945494 1370 P61019;P61019-2 RAB2A Ras-related protein Rab-2A yes no 0 1 0 0 0 6 0 1 78.332 78.332 2 0.0073117 25264 TMT1-5 54.525 13.023 23.212 44.777 28.333 5.4159 29.052 30.085 22 44 29 7 29 29 1 1 1 1 1 1 3427 2195 1370 2181 3502 4570 4570 1 AYDATHLVK Unmodified 1016.5291 0.52909508 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 5.5 0.5 1 1 42.418 42.418 3 0.00038079 11070 TMT1-5 109.29 77.356 569.79 956.56 627.92 582.09 650.51 990.94 539 945 660 578 680 947 3 3 3 3 3 3 128460 2196 637 2182 3503;3504 4571;4572;4573 4572 3 AYDAVQLFALTGPAESK Unmodified 1779.9043 0.90431529 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 7 0 1 74.814 74.814 3 0.01889 23246 TMT1-6 43.598 23.76 131.17 219.86 130.36 114.66 231.5 202.33 124 217 138 116 233 196 2 2 2 2 2 2 25786 2197 785 2183 3505 4574;4575 4574 2 AYDLAGSCR Unmodified 1011.4444 0.44437918 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 4 0 1 38.254 38.254 2 0.014497 9491 TMT1-3 82.749 57.013 23.138 52.128 34.429 28.696 50.466 45.464 22 51 36 29 51 44 1 1 1 1 1 1 291120 2198 1574 2184 3506 4576 4576 1 AYDPDYER Unmodified 1027.4247 0.42468959 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 2 0 1 36.222 36.222 2 0.017104 9430 TMT1-1 91.064 70.163 38.123 50.996 41.688 59.889 54.236 107.18 36 51 44 58 58 102 1 1 1 1 1 1 7393.1 2199 2852 2185 3507 4577 4577 1 AYDTDAGPVFVK Unmodified 1281.6241 0.62411768 2646 Q9H479 FN3K Fructosamine-3-kinase yes yes 0 0 0 0 0 5 0 1 56.042 56.042 3 1.1326E-05 16344 TMT1-4 109.16 85.407 84.316 122.64 152.26 99.344 163.1 204.28 80 123 152 102 167 196 1 1 1 1 1 1 22437 2200 2646 2186 3508 4578 4578 1 AYDYLVQNTSFANK Unmodified 1632.7784 0.77838649 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 7 0 1 62.839 62.839 3 7.3819E-05 18592 TMT1-6 87.863 67.2 138.94 173.66 126.15 100.42 188.47 134.27 131 174 131 102 189 131 1 1 1 1 1 1 21607 2201 934 2187 3509 4579 4579 1 AYEDAEAK Unmodified 895.39233 0.39232683 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 2 0 1 36.026 36.026 2 0.0040855 9381 TMT1-1 127.56 66.777 92.376 92.356 85.583 57.113 62.755 76.027 87 94 87 58 65 73 1 1 1 1 1 1 5458.9 2202 1742 2188 3510 4580 4580 1 AYEDGCK Unmodified 841.32762 0.32761808 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 3 0 1 32.488 32.488 2 0.0291 8319 TMT1-2 91.065 30.059 303.19 176.87 290.07 259.63 444.35 206.92 285 190 290 261 443 206 1 1 1 1 1 1 27882 2203 986 2189 3511 4581 4581 1 AYFAVFDGHGGVDAAR Unmodified 1651.7743 0.77430417 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 6 0 1 56.153 56.153 3 0.00032509 16614 TMT1-5 74.12 57.813 77.203 85.409 116.82 71.373 77.292 90.536 73 87 116 73 80 87 1 1 1 1 1 1 26695 2204 1187 2190 3512 4582 4582 1 AYFHLLNQIAPK Unmodified 1413.7769 0.77687035 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 no no 0 0 0 0 0 9 0 1 61.801 61.801 3 3.7201E-08 16424 TMT1-8 129.16 97.094 153.62 197.59 162.65 121.57 168.82 221.17 145 198 167 123 174 212 1 1 1 1 1 1 17216 2205 691 2191 3513 4583 4583 1 AYGELPEHAK Unmodified 1113.5455 0.54547343 96 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 0 0 4 0 1 37.805 37.805 3 1.7061E-05 9452 TMT1-3 97.456 59.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2206 96 2192 3514 4584 4584 1 AYGPGIEPTGNMVK Unmodified 1432.7021 0.70205043 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.5 2.5 1 1 52.399 52.399 3 7.8225E-15 15000 TMT1-5 136.24 114.37 971.02 1220.9 957.34 898.36 1038.7 1570.4 916 1224 994 892 1084 1501 3 3 3 3 3 3 274980 2207 831 2193 3515;3516 4585;4586;4587 4587 3 AYGPGIEPTGNMVK Oxidation (M) 1448.697 0.69696505 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 5.33 0.471 2 1 46.563 46.563 2;3 1.7683E-05 12670 TMT1-4 105.2 80.342 222.69 287.01 200.04 198.39 208.25 310.66 210 287 210 196 218 297 2 2 2 2 2 2 30356 2208 831 2193 3517;3518;3519 4588;4589;4590 4589 156 3 AYGPGIEPTGNMVKK Unmodified 1560.797 0.79701344 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 7 0 1 48.054 48.054 3 5.9821E-05 12750 TMT1-6 88.561 60.53 99.693 83.748 125.47 46.79 78.422 90.504 94 87 123 51 80 87 1 1 1 1 1 1 9353.2 2209 831 2194 3520 4591 4591 1 AYGPYSVTNCGEHDTTEYK Unmodified 2190.9164 0.91641289 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 4 0 1 45.384 45.384 3 1.6919E-35 12486 TMT1-3 158.45 156.04 38.058 34.626 66.526 34.444 49.946 52.941 36 36 65 36 51 51 1 1 1 1 1 1 11754 2210 936 2195 3521 4592 4592 1 AYGQALAK Unmodified 820.4443 0.44430282 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 6.5 0.5 1 1 41.595 41.595 2 0.0032851 10722 TMT1-5 132.29 57.543 274.43 623.56 417.34 374.81 483.89 485.08 261 610 437 374 495 468 2 2 2 2 2 2 42438 2211 937 2196 3522;3523 4593;4594 4593 2 AYHEQLSVAEITNACFEPANQMVK Unmodified 2749.284 0.28398571 1491;2068;1492;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366 TUBA3E;TUBA1B;TUBA1A;TUBA4A Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain no no 0 0 0 0 0 5.5 0.5 2 2 63.135 63.135 3;4;5 9.4527E-51 19250 TMT1-5 171.06 156.83 371.47 424.89 326.12 347.33 316.15 502.66 350 428 341 341 334 480 5 5 5 5 5 5 108940 2212 622;1491;2068;1492 2197 3524;3525;3526;3527 4595;4596;4597;4598;4599 4597 5 AYHPHCFTCVVCAR Unmodified 1776.7647 0.76468423 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 8 0 1 36.351 36.351 4 1.2899E-07 8171 TMT1-7 109.72 98.282 390.51 462.93 519.96 363.34 478.08 608.9 369 468 523 369 493 584 2 2 2 2 2 2 81280 2213 1881 2198 3528 4600;4601 4600 2 AYHSFLVEPISCHAWNK Acetyl (N-term) 2099.9887 0.98873039 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 1 0 0 0 0 7 0.816 1 1 1 61.574 61.574 3 7.1536E-34 18130 TMT1-6 103.61 71.059 201.33 238.03 224.5 252.08 239.99 411.02 190 240 232 247 254 392 3 3 3 3 3 3 62780 2214 128 2199 3529;3530;3531 4602;4603;4604 4603 3 AYIGFIQSLAQFLGADASR Unmodified 2027.0476 0.04762548 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 9 0 1 103.14 103.14 3 2.0938E-37 32229 TMT1-8 165.66 144.92 9.5257 23.508 19.223 21.523 15.14 17.69 9 23 20 21 16 17 1 2 2 2 2 2 8492.9 2215 1314 2200 3532 4605;4606 4606 2 AYILNLVK Unmodified 932.5695 0.56950333 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 9 0 1 66.74 66.74 2 0.0068903 18404 TMT1-8 122.54 36.693 180.57 311.95 405.28 250 474.8 551.43 172 311 403 259 483 530 1 1 1 1 1 1 40849 2216 1233 2201 3533 4607 4607 1 AYINKVEELK Unmodified 1205.6656 0.66558856 526 P07108;P07108-3;P07108-2;P07108-4;P07108-5 DBI Acyl-CoA-binding protein yes no 0 0 0 0 1 7 0 1 54.106 54.106 3 8.2172E-05 15132 TMT1-6 127.42 94.195 464.59 1007 773.14 569.58 681.13 968.75 442 988 796 575 708 927 1 1 1 1 1 1 69722 2217 526 2202 3534 4608 4608 1 AYIQENLELVEK Unmodified 1447.7559 0.75586013 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5 0 1 63.607 63.607 3 1.1343E-08 19333 TMT1-4 112.43 75.583 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2218 657 2203 3535 4609 4609 1 AYIVQLQIEDLTR Unmodified 1560.8512 0.8511575 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 SF1 Splicing factor 1 yes no 0 0 0 0 0 6.5 0.5 1 1 72.906 72.906 2 1.4167E-05 23180 TMT1-5 90.697 52.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2219 1866 2204 3536;3537 4610;4611 4610 2 AYLDQTVVPILLQGLAVLAK Unmodified 2124.2558 0.25582734 2592 Q9C005 DPY30 Protein dpy-30 homolog yes yes 0 0 0 0 0 9 0 1 108.76 108.76 3 1.6743E-15 33776 TMT1-8 105.99 86.912 61.551 63.998 60.51 54.415 53.215 52.847 58 65 62 54 55 51 3 3 3 3 3 3 6568.3 2220 2592 2205 3538 4612;4613;4614 4613 3 AYLEDTCVEWLHK Unmodified 1662.7712 0.77119262 689 P13747 HLA-E HLA class I histocompatibility antigen, alpha chain E yes yes 0 0 0 0 0 5.5 0.5 1 1 61.401 61.401 3 0.001341 18477 TMT1-4 73.848 45.215 161.45 148.33 150.42 121.41 216.04 186.78 152 152 153 123 218 181 2 2 2 2 2 2 23576 2221 689 2206 3539;3540 4615;4616 4615 2 AYLEGECVEWLR Unmodified 1523.7079 0.70786408 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 0 4.67 0.471 1 2 64.773 64.773 2;3 3.7315E-09 20032 TMT1-3 142.08 112.34 169.36 225.71 199.28 158.36 188.63 265.38 160 226 204 159 196 254 3 3 3 3 3 3 51042 2222 425 2207 3541;3542;3543 4617;4618;4619 4617 3 AYLEGTCVEWLR Unmodified 1495.7129 0.71294946 629 P10321;P10321-2 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 0 0 0 0 0 5.5 0.5 1 1 65.284 65.284 2 5.9789E-25 20113 TMT1-5 194.94 138.5 214.21 436.99 236.61 245.01 286.9 394.76 203 428 254 242 298 378 2 2 2 2 2 2 108170 2223 629 2208 3544;3545 4620;4621 4621 2 AYLESEVAISEELVQK Unmodified 1806.9251 0.92511031 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 4.4 0.49 3 2 74.517 74.517 3;4 8.8089E-24 23843 TMT1-3 174.51 140.82 1038.9 1324.2 1183.1 1002.7 1170.9 1360.9 981 1329 1213 1002 1202 1308 17 17 17 17 15 17 206550 2224 2708;2709 2209 3546;3547;3548;3549;3550 4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638 4625 17 AYLPTGK Unmodified 748.41194 0.41194006 2742 Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 0 7 0 1 45.541 45.541 2 0.042111 11733 TMT1-6 85.265 43.963 146.25 227.64 113.46 117.39 140.3 174.02 138 225 123 116 145 167 1 1 1 1 1 1 13669 2225 2742 2210 3551 4639 4639 1 AYLPVNESFGFTADLR Unmodified 1798.889 0.88899957 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 73.318 73.318 3 1.3473E-11 22668 TMT1-6 121.13 85.825 107.92 184.69 100.57 128.96 89.03 128.58 102 182 109 125 95 123 4 4 4 4 4 4 82567 2226 685 2211 3552;3553 4640;4641;4642;4643 4642 4 AYLQQLR Unmodified 890.4974 0.49740102 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 7 0 1 44.708 44.708 2 0.010729 11444 TMT1-6 106.84 55.387 1428.3 2152.3 1571.1 1262.8 1511.1 2007.9 1350 2138 1630 1267 1566 1924 1 1 1 1 1 1 234820 2227 130 2212 3554 4644 4644 1 AYLSIWTELQAYIK Unmodified 1697.9029 0.90285872 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 9 0 3 92.902 92.902 2;3;4 3.7611E-21 28603 TMT1-8 172.09 132.21 332.18 465.65 401.68 349.51 483.9 488.28 314 465 413 350 494 471 7 7 7 7 7 7 31384 2228 1555;1556 2213 3555;3556;3557 4645;4646;4647;4648;4649;4650;4651;4652 4648 8 AYMLHIGTLDK Unmodified 1260.6536 0.65364367 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 8 0 1 56.19 56.19 3 0.00018118 16010 TMT1-7 100.88 63.767 191.96 249.2 167.28 162.35 136.22 232.76 181 249 176 160 145 222 1 1 1 1 1 1 54751 2229 2662 2214 3558 4653 4653 1 AYNYVAQEVDDYHAFQTLTHIYNK Unmodified 2902.3562 0.35622268 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 6 0 1 70.779 70.779 4 1.8769E-07 22290 TMT1-5 77.693 59.446 46.098 72.461 125.75 86.14 77.419 67.081 44 73 124 87 80 65 1 1 1 1 1 1 12632 2230 2789 2215 3559 4654 4654 1 AYPDVAALSDGYWVVSNR Unmodified 1981.9534 0.95339074 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 6 0 1 73.774 73.774 3 1.7039E-30 23480 TMT1-5 170.09 139.55 122.8 143.35 158.47 121.92 163.38 165.9 116 145 160 123 167 160 2 2 2 2 2 2 83484 2231 105 2216 3560 4655;4656 4655 2 AYPHVFTK Unmodified 961.50215 0.50215205 114 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 0 0 8 0 1 43.029 43.029 3 0.020099 10891 TMT1-7 62.88 38.659 299.86 517.13 380.32 350.47 384.26 525.23 284 511 396 348 400 503 1 1 1 1 1 1 44975 2232 114 2217 3561 4657 4657 1 AYPLADAHLTK Unmodified 1198.6346 0.63462279 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 0 6 0 1 47.618 47.618 3 3.4567E-05 13205 TMT1-5 85.924 74.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2233 1323 2218 3562 4658 4658 1 AYQIDTVINLNVPFEVIK Unmodified 2075.1303 0.13029248 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 7 0 1 86.03 86.03 3 0.00015797 27660 TMT1-6 55.763 23.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2234 2881 2219 3563 4659 4659 1 AYQNWVK Unmodified 907.4552 0.45520186 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 8 0 1 48.626 48.626 2 0.017035 13089 TMT1-7 99.919 41.96 99.522 122.13 121.78 78.045 113.62 120.41 94 123 123 80 116 116 1 1 1 1 1 1 10112 2235 1106 2220 3564 4660 4660 1 AYSDPSTGEPATYGELQQR Unmodified 2068.9338 0.93377751 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3 0 1 47.298 47.298 3 6.9812E-45 14187 TMT1-2 184.31 175.25 46.418 112.21 38.313 52.28 62.721 83.49 44 109 44 51 65 80 1 1 1 1 1 1 28626 2236 1833 2221 3565 4661 4661 1 AYSEAHEISK Unmodified 1133.5353 0.53530267 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 4 0 1 34.664 34.664 2 0.0027842 8093 TMT1-3 98.249 57.817 30.518 51.249 57.27 50.68 87.698 28.411 29 51 58 51 87 29 1 1 1 1 1 1 184390 2237 1411 2222 3566 4662 4662 1 AYSNWPTYPQLYVK Unmodified 1728.8512 0.8511575 321 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 0 8.5 0.5 1 1 67.988 67.988 3 2.2212E-12 18895 TMT1-8 124.07 79.768 84.718 132.4 76.308 42.233 69.69 137.66 80 131 80 44 73 131 1 1 1 1 1 1 14108 2238 321 2223 3567;3568 4663;4664 4664 2 AYSPEYR Unmodified 884.40283 0.40283194 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 3 0 1 33.478 33.478 2 0.0079842 8697 TMT1-2 121.29 63.099 77.398 93.505 77.269 73.86 70.362 75.81 73 94 80 73 73 73 1 1 1 1 1 1 13511 2239 2852 2224 3569 4665 4665 1 AYTNFDAER Unmodified 1085.4778 0.47778779 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 3.33 0.471 2 1 40.64 40.64 2;3 0.0001251 11563 TMT1-2 132.01 107.5 647.48 1192.5 715.42 671.73 779.42 863.6 613 1173 758 667 803 831 3 3 3 3 3 3 243870 2240 534 2225 3570;3571;3572 4666;4667;4668;4669 4668 4 AYTNFDAERDALNIETAIK Unmodified 2154.0593 0.059312378 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 1 5 0 2 66.071 66.071 3;4 4.0508E-18 20264 TMT1-4 127.97 94.972 238.04 427.37 206.77 220.84 271.79 410.12 225 420 225 218 283 392 3 3 3 3 3 3 45022 2241 534 2226 3573;3574 4670;4671;4672 4670 3 AYVAVDGIPQGVLER Unmodified 1585.8464 0.84640648 739 P16278;P16278-3;P16278-2 GLB1 Beta-galactosidase yes no 0 0 0 0 0 5 0 1 62.845 62.845 3 0.00058322 19017 TMT1-4 73.415 43.084 84.862 124.16 59.108 75.091 62.478 60.045 80 123 65 73 65 58 1 1 1 1 1 1 11573 2242 739 2227 3575 4673 4673 1 AYVHEFK Unmodified 892.4443 0.44430282 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 6 0 1 38.844 38.844 3 0.01629 9666 TMT1-5 72.234 38.156 245.8 308.84 264.53 200.23 370.98 320.94 232 310 271 204 374 311 2 2 2 2 2 2 21758 2243 2648 2228 3576 4674;4675 4674 2 AYVVLGQFLVLK Unmodified 1348.8119 0.81185887 285 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 0 9 0 1 84.055 84.055 3 1.6259E-07 25140 TMT1-8 116.77 68.025 595.53 927.78 654.66 673.51 761.3 1053.9 563 920 687 665 792 1009 3 3 3 3 3 3 56229 2244 285 2229 3577 4676;4677;4678 4677 3 AYWQVHLDQVEVASGLTLCK Unmodified 2316.1573 0.15725228 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 7.5 0.5 1 1 71.397 71.397 4 4.1987E-10 22025 TMT1-7 97.284 81.162 122.8 151.99 151.03 107.18 157.28 150.08 116 153 153 109 160 145 2 2 2 2 2 2 14568 2245 533 2230 3578;3579 4679;4680 4680 2 AYYHLLEQVAPK Unmodified 1430.7558 0.75580056 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 5.5 2.69 1 1 1 1 59.334 59.334 3 7.3786E-11 16947 TMT1-6 159.09 144.84 882.51 1627.5 1240.8 1066.3 1440.2 1380.9 837 1605 1285 1068 1469 1334 5 5 5 5 5 5 255300 2246 690 2231 3580;3581;3582;3583 4681;4682;4683;4684;4685;4686 4684 6 AYYHLLEQVAPKGDEEGVPAVVIDMSGLR Unmodified 3155.5961 0.59613538 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 1 6.33 0.471 2 1 76.172 76.172 4;5 3.9542E-13 24533 TMT1-5 87.972 83.017 314.42 499.51 293.56 304.12 275.77 456.91 297 494 313 299 292 436 8 8 8 8 8 8 75142 2247 690 2232 3584;3585;3586 4687;4688;4689;4690;4691;4692;4693;4694 4692 8 CANLFEALVGTLK Unmodified 1434.7541 0.754086 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 0 9 0 1 85.95 85.95 3 5.2296E-12 25921 TMT1-8 131.06 89.842 100.53 138.05 119.8 100.94 181.15 133.41 95 138 123 102 182 130 2 2 2 2 2 2 25514 2248 2818 2233 3587 4695;4696 4696 2 CAPGVVGPAEADIDFDIIR Unmodified 2013.983 0.98297631 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 0 1 72.804 72.804 3 1.5355E-31 23193 TMT1-3 153.72 136.01 77.247 86.61 108.48 87.033 84.707 66.873 73 88 109 87 87 65 2 2 2 2 2 2 70235 2249 831 2234 3588 4697;4698 4697 2 CAPGVVGPAEADIDFDIIRNDNDTFTVK Unmodified 3048.4499 0.44986507 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5 0 1 73.456 73.456 4 1.2928E-11 23162 TMT1-4 83.362 65.568 84.72 123.77 83.388 64.937 60.527 130.46 80 123 87 65 65 124 2 2 2 2 2 2 15236 2250 831 2235 3589 4699;4700 4699 2 CAQIEAK Unmodified 818.39564 0.39563807 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 0 5 0 1 35.487 35.487 2 0.010017 8248 TMT1-4 109.86 38.95 146.74 142.65 104.09 102.15 166.71 95.447 138 145 109 102 167 94 1 1 1 1 1 1 11457 2251 1315;1316 2236 3590 4701 4701 1 CASPSLAAHGPLGR Unmodified 1392.6932 0.69321707 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 0 8 1 1 1 37.448 37.448 3 7.0432E-06 8576 TMT1-6 100.69 77.775 176.41 274.66 234.27 156.15 253.63 294.44 167 273 239 160 259 283 2 2 2 2 2 2 21716 2252 711 2237 3591;3592 4702;4703 4702 2 CATSKPAFFAEK Unmodified 1355.6544 0.65437195 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 8 0 1 48.389 48.389 3 0.00064615 12959 TMT1-7 88.092 58.111 211.32 326.97 273.86 188.84 307.65 291.83 200 325 280 193 312 282 1 1 1 1 1 1 20645 2253 461 2238 3593 4704 4704 1 CCAAADPHECYAK Unmodified 1551.5905 0.59046784 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 4 0 1 33.345 33.345 3 2.2442E-06 7651 TMT1-3 113.61 94.031 200.91 185.93 160.36 183.29 323.1 245.55 189 190 167 182 325 239 2 2 2 2 2 2 38162 + 2254 28 2239 3594 4705;4706 4705 2 CCPGYSGPK Unmodified 1024.4106 0.41063621 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 6 0 1 35.738 35.738 2 0.003037 8490 TMT1-5 102.51 65.493 61.615 56.619 56.117 65.793 101.39 66.397 58 58 58 65 102 65 1 1 1 1 1 1 7931.6 2255 1684 2240 3595 4707 4707 1 CCSGAIIVLTK Unmodified 1220.6257 0.62571436 706 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 0 8 0 2 57.061 57.061 2;3 0.0019813 16451 TMT1-7 78.342 51.555 192.92 200.25 227.16 244.12 189.59 335.71 182 204 232 239 203 320 3 3 3 3 3 3 43228 2256 706 2241 3596;3597 4708;4709;4710 4709 3 CCTESLVNR Unmodified 1137.4907 0.49067744 28;29 CON__P02768-1;P02768;P02768-2;P02768-3;CON__P02769 ALB Serum albumin no no 0 0 0 0 0 4 0 1 34.388 34.388 2 8.2594E-05 8091 TMT1-3 151.5 111.4 122.81 150.92 151.44 75.152 173.41 149.62 116 152 152 80 174 145 1 1 1 1 1 1 22354 + 2257 28;29 2242 3598 4711 4711 1 CDCGLGPFLGWLR Unmodified 1549.717 0.71698898 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 2 81.065 81.065 2 0.0014363 24039 TMT1-8 76.143 44.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2258 1067 2243 3599;3600 4712;4713 4713 2 CDDLEALK Unmodified 962.4379 0.43789681 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 3.5 0.5 1 1 51.527 51.527 2 0.00134 14849 TMT1-3 89.355 67.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2259 500 2244 3601;3602 4714;4715 4715 2 CDENILWLDYK Unmodified 1467.6704 0.67041595 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5 0 2 70.657 70.657 2;3 6.3633E-06 22074 TMT1-4 127.51 112.31 283.59 396.67 332.18 259.43 379.69 292.98 268 396 341 262 384 285 2 2 2 2 2 2 140570 2260 706;707 2245 3603;3604 4716;4717 4716 2 CDEPILSNR Unmodified 1102.5077 0.50770771 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 3 0 1 39.118 39.118 2 0.0051073 10962 TMT1-2 97.965 55.891 46.446 96.095 47.226 43.923 72.031 67.235 44 94 51 44 73 65 1 1 1 1 1 1 6642.4 2261 954 2246 3605 4718 4718 1 CDFTEDQTAEFK Acetyl (N-term) 1531.6137 0.61368893 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 1 0 0 0 0 2 0.632 1 3 1 62.333 62.333 2;3 3.0076E-42 19821 TMT1-1 152.28 125.6 1421.2 1943.3 1687.9 1401 1172.7 2112.4 1343 1943 1732 1394 1252 2013 6 6 6 6 6 6 1116000 2262 1356 2247 3606;3607;3608;3609;3610 4719;4720;4721;4722;4723;4724;4725 4721 7 CDISLQFFLPFSLGK Unmodified 1770.9015 0.90147851 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 1 93.407 93.407 3 0.014211 28689 TMT1-8 45.14 22.942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2263 676 2248 3611 4726 4726 1 CDLCQEVLADIGFVK Unmodified 1765.8379 0.83789198 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3;P0CW19-2 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 5.67 0.471 1 2 83.777 83.777 3;4 1.1537E-07 27465 TMT1-5 107.07 101.04 277.2 307.67 399.02 312.53 366.23 430.87 262 313 400 314 378 414 6 6 6 6 6 6 56177 2264 1149 2249 3612;3613;3614 4727;4728;4729;4730;4731;4732 4731 6 CDLEDER Unmodified 935.36546 0.36546015 1384;1447;365 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834;O95716 RAP1B;RAP1A;RAB3D Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A;Ras-related protein Rab-3D no no 0 0 0 0 0 2 0 1 31.628 31.628 2 0.0032903 7641 TMT1-1 87.284 59.797 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2265 1384;1447;365 2250 3615 4733 4733 1 CDLEDERVVGK Unmodified 1318.6187 0.61871473 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 1 2.5 0.5 1 1 42.257 42.257 3 0.00037262 11964 TMT1-1 78.342 57.564 169.92 178.72 143.81 203.7 104.1 229.42 160 181 152 196 116 218 1 1 1 1 1 1 13732 2266 1384;1447 2251 3616;3617 4734;4735 4734 2 CDLISIPK Unmodified 944.5001 0.50010314 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 7 0 1 58.039 58.039 2 0.016047 16695 TMT1-6 91.853 53.062 138.09 228.49 222.74 190.04 231.32 198.07 131 227 227 190 236 192 1 1 1 1 1 1 18313 2267 2913 2252 3618 4736 4736 1 CDNCPYNHNPDQADTDNNGEGDACAADIDGDGILNER Unmodified 4091.5824 0.58244153 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 2 0 1 52.131 52.131 4 6.1122E-23 15773 TMT1-1 102.32 98.046 7.3493 15.226 14.27 22.654 28.772 15.169 7 15 15 22 29 15 1 1 1 1 1 1 13362 + 2268 32;554 2253 3619 4737 4737 1 CDRVDQLTAQLADLAAR Unmodified 1914.9582 0.95815855 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 6 0 1 66.437 66.437 3 3.9128E-07 20595 TMT1-5 94.71 67.561 290.91 410.75 351.67 336.44 407.47 385.99 275 410 363 334 417 373 3 3 3 3 3 3 54317 2269 776 2254 3620 4738;4739;4740 4739 3 CDVDIRK Unmodified 904.44365 0.44365089 1357;1479;1952 P60709;P63261;Q562R1 ACTB;ACTG1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 0 0 1 5 0 1 35.22 35.22 3 0.024511 8174 TMT1-4 73.665 27.783 5958.5 8012.1 5806.4 5746.3 6858.6 8732 5623 7999 6075 5692 7096 8375 1 1 1 1 1 1 848650 2270 1357;1479;1952 2255 3621 4741 4741 1 CEAFGWHAIIVDGHSVEELCK Unmodified 2456.1253 0.12530023 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 6 0 1 61.313 61.313 4 0.00028838 18652 TMT1-5 54.834 40.221 53.773 95.067 79.135 32.548 110.76 51.205 51 94 80 36 109 51 1 1 1 1 1 1 11109 2271 937 2256 3622 4742 4742 1 CECGSCVCIQPGSYGDTCEK Unmodified 2365.8742 0.8741722 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 4 0 1 48.252 48.252 3 1.1769E-05 13605 TMT1-3 75.533 67.999 23.337 28.938 20.622 29.805 35.26 29.908 22 29 22 29 36 29 1 1 1 1 1 1 16139 2272 484 2257 3623 4743 4743 1 CEDCGKPLSIEADDNGCFPLDGHVLCR Unmodified 3133.3362 0.33617399 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 1 4 0 1 59.586 59.586 4 2.8086E-11 18049 TMT1-3 82.479 76.638 53.984 72.99 62.335 75.047 54.602 76.26 51 73 65 73 58 73 1 1 1 1 1 1 17772 2273 1881 2258 3624 4744 4744 1 CEFQDAYVLLSEK Unmodified 1600.7443 0.74430917 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 72.842 72.842 2 2.8586E-10 22933 TMT1-4 134.98 101.57 30.662 27.906 52.793 12.575 35.795 37.355 29 29 51 15 36 36 1 1 1 1 1 1 7031.8 2274 638 2259 3625 4745 4745 1 CEGGVDAALLYAK Unmodified 1365.6599 0.65985126 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 60.154 60.154 3 0.00010954 17975 TMT1-4 70.089 46.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2275 2309 2260 3626 4746 4746 1 CEGSSVQTR Unmodified 1022.4451 0.44510746 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 2 0.816 1 1 1 21.975 21.975 2 0.00044127 3991 TMT1-1 137.69 79.407 112.7 102.65 87.789 88.578 184.31 88.549 106 105 91 89 183 88 3 3 3 3 3 3 14651 + 2276 32;554 2261 3627;3628;3629 4747;4748;4749 4748 3 CEKPFLGHR Unmodified 1142.5655 0.56549736 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 1 7 0 1 33.515 33.515 4 0.020338 6963 TMT1-6 59.931 42.111 231.07 289.09 232.49 194.75 298.95 324.06 218 290 240 196 305 312 2 2 2 2 2 2 15931 2277 1149;2097 2262 3630 4750;4751 4750 2 CELCDVELADLGFVK Unmodified 1766.8219 0.82190756 2097 Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS2 LIM and senescent cell antigen-like-containing domain protein 2 yes no 0 0 0 0 0 5 0 1 87.874 87.874 3 0.00054265 28828 TMT1-4 73.91 54.332 61.283 86.997 86.055 57.243 54.358 107.18 58 87 87 58 58 102 1 1 1 1 1 1 13339 2278 2097 2263 3631 4752 4752 1 CELNCPK Unmodified 919.38917 0.38917248 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 35.726 35.726 2 0.027841 8353 TMT1-4 91.626 55.07 37.987 50.618 64.857 50.39 79.063 67.034 36 51 65 51 80 65 1 1 1 1 1 1 5223.2 2279 471 2264 3632 4753 4753 1 CENTDPGYNCLPCPPR Unmodified 1948.7866 0.78660147 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 3.5 0.5 1 1 47.054 47.054 3 2.0137E-23 14129 TMT1-2 167.56 143.76 546.99 535.92 487.05 476.03 634.49 624.69 515 546 502 473 648 603 5 5 5 5 5 5 90726 + 2280 32;554 2265 3633;3634 4754;4755;4756;4757;4758 4755 5 CESAPGCGVWQRPVIDNPNYK Unmodified 2446.1158 0.11579817 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 6 0 1 51.345 51.345 4 1.5887E-05 14701 TMT1-5 70.114 47.893 92.047 115.19 121.56 93.251 119.44 143.7 87 116 123 94 123 138 1 1 1 1 1 1 10683 2281 920 2266 3635 4759 4759 1 CESISGTLPISYQLLK Unmodified 1807.939 0.93898623 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 7 0 1 71.817 71.817 3 5.3466E-20 22128 TMT1-6 121.42 96.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2282 740 2267 3636 4760 4760 1 CFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR Unmodified 3396.6045 0.60446823 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 4 0 1 66.296 66.296 3 9.126E-05 20681 TMT1-3 37.63 31.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2283 250 2268 3637 4761 4761 1 CFSVLGFCK Unmodified 1116.5096 0.50962197 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 1 65.87 65.87 2 0.0043352 18047 TMT1-8 103.56 51.709 68.853 94.202 70.074 65.4 78.08 75.59 65 94 73 65 80 73 1 1 1 1 1 1 5600.2 2284 676 2269 3638 4762 4762 1 CGDLEEELK Unmodified 1091.4805 0.48048991 1486;1487;551 P67936;P67936-2;P07951 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 0 2 0 1 50.923 50.923 2 4.8809E-05 15249 TMT1-1 153.08 97.713 276.66 262.81 347.93 329.76 541.94 377.89 261 270 351 330 545 369 2 2 2 2 2 2 76631 + 2285 1486;1487;551 2270 3639 4763;4764 4763 2 CGDLEEELKNVTNNLK Unmodified 1874.9044 0.90439164 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 1 5 0 1 68.08 68.08 3 5.1939E-05 21060 TMT1-4 82.259 71.444 108.24 121.92 98.941 79.969 83.676 106.34 102 123 102 80 87 102 1 1 1 1 1 1 14653 2286 1486;1487 2271 3640 4765 4765 1 CGPASVQAIK Unmodified 1029.5277 0.52771487 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 7 0 1 42.729 42.729 3 0.0022516 10636 TMT1-6 81.95 46.007 207.5 290.8 225.15 262.9 243.85 284.06 196 290 236 257 254 273 1 1 1 1 1 1 22236 2287 393 2272 3641 4766 4766 1 CGPGWLGSQCECSEEDYRPSQQDECSPR Unmodified 3373.3129 0.31287237 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 3 0 2 48.905 48.905 4 1.0497E-11 14343 TMT1-2 84.947 83.089 46.472 81.055 55.711 43.713 56.299 68.749 44 80 58 44 58 66 2 2 2 2 2 2 31978 2288 484 2273 3642;3643 4767;4768 4767 2 CGTGIVGVFVK Unmodified 1135.606 0.6059652 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 9 0 1 62.401 62.401 2 2.5857E-07 16644 TMT1-8 134.25 77.835 162.03 194.37 194.32 118.28 243.58 272.34 153 196 196 123 247 262 2 2 2 2 2 2 26108 2289 41 2274 3644 4769;4770 4769 2 CGYAGSNFPEHIFPALVGR Unmodified 2090.9996 0.99962943 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 8 0 1 64.272 64.272 3 0.028113 19227 TMT1-7 37.85 29.465 176.96 162.87 236.28 164.55 207.4 197.69 167 168 235 167 212 191 1 1 1 1 1 1 11042 2290 1380 2275 3645 4771 4771 1 CHAIIDEQPLIFK Unmodified 1582.8177 0.81774888 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3;P0CW19-2 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 6 0 1 57.989 57.989 3 8.4626E-05 17347 TMT1-5 94.191 73.528 207.7 228.74 245.25 162.45 290.34 161.21 196 232 247 167 290 159 2 2 2 2 2 2 70258 2291 1149 2276 3646 4772;4773 4773 2 CHGCDFK Unmodified 922.34256 0.34255664 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 5 0 1 29.418 29.418 3 0.0038802 5883 TMT1-4 97.602 83.832 69.009 71.97 62.737 65.705 85.138 82.851 65 73 65 65 87 80 1 1 1 1 1 1 3946.1 2292 2718 2277 3647 4774 4774 1 CHLEDNLYK Unmodified 1190.539 0.53900784 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 4 0 1 41.293 41.293 3 0.0040478 10835 TMT1-3 77.677 53.296 84.499 131.79 113.68 78.533 113.34 127.88 80 131 116 80 116 123 1 1 1 1 1 1 5377.6 2293 485 2278 3648 4775 4775 1 CHQPLAR Unmodified 880.43375 0.43375491 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 5 0 1 20.209 20.209 3 0.020384 3550 TMT1-4 67.035 31.929 9.5431 9.8157 10.818 10.044 12.82 9.2282 9 10 11 10 13 9 2 2 2 2 2 2 1462.8 2294 1881 2279 3649 4776;4777 4777 2 CIAVGESDGSIWNPDGIDPK Unmodified 2128.9735 0.97353384 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 5 0 1 68.193 68.193 3 1.5739E-18 21134 TMT1-4 97.284 84.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2295 387 2280 3650 4778 4778 1 CIEGGQK Unmodified 790.36434 0.36433794 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 4.5 0.5 1 1 32.318 32.318 2 0.0083263 6974 TMT1-4 117.17 91.432 583.47 220.24 574.87 455.74 737.55 361.65 548 253 565 461 737 359 2 2 2 2 2 2 55415 2296 567 2281 3651;3652 4779;4780 4780 2 CIESLIAVFQK Unmodified 1306.6955 0.69550848 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 0 9 0 1 79.939 79.939 3 3.4092E-07 23569 TMT1-8 123.75 80.502 191.49 322.37 183.62 182.95 267.8 241.8 181 318 196 182 272 234 2 2 2 2 2 2 38935 2297 987 2282 3653 4781;4782 4782 2 CIIPNHEK Unmodified 1009.5015 0.50150012 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 0 0 0 3.5 2.5 1 1 35.938 35.938 3 0.0010987 8454 TMT1-5 115.7 47.801 1419.5 1741.8 1781.9 1309.1 2155 1713.4 1341 1755 1804 1332 2174 1665 3 3 3 3 3 3 163320 2298 1019;1020;1029 2283 3654;3655 4783;4784;4785 4784 3 CIIPNHEKK Unmodified 1137.5965 0.59646314 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 7 0 1 34.372 34.372 4 0.0014961 7359 TMT1-6 90.629 60.375 146.98 336.87 259.46 214.59 204.32 311.84 140 330 268 214 215 298 1 1 1 1 1 1 14717 2299 1019 2284 3656 4786 4786 1 CILVITWIQHLIPK Unmodified 1733.0062 0.0062183574 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 9 0 1 89.582 89.582 3 0.018492 27278 TMT1-8 44.511 21.393 23.092 51.999 42.37 44.941 33.244 68.341 22 51 44 44 36 65 1 1 1 1 1 1 7040 2300 2907 2285 3657 4787 4787 1 CIPALDSLTPANEDQK Unmodified 1770.8458 0.84581413 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 62.761 62.761 3 1.5886E-11 19028 TMT1-4 119.62 87.815 146.46 141.89 150.45 106.81 178.72 196.37 138 145 152 109 182 189 2 2 2 2 2 2 18453 2301 638 2286 3658 4788;4789 4789 2 CKDGVVFGVEK Unmodified 1236.6173 0.61725816 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 1 7 0 1 48.572 48.572 3 0.0055788 12956 TMT1-6 74.537 22.193 130.3 166.54 141.1 115.41 157.71 126.62 123 167 145 116 160 123 1 1 1 1 1 1 10706 2302 892 2287 3659 4790 4790 1 CLFASGSPFGPVK Unmodified 1365.6751 0.67510739 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 9 0 1 66.468 66.468 2 3.4199E-12 18283 TMT1-8 121.9 82.877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2303 859 2288 3660 4791 4791 1 CLFTLLGHLDYIR Unmodified 1619.8494 0.84938336 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 76.39 76.39 3 0.043063 22117 TMT1-8 38.399 21.562 46.829 34.561 34.999 36.896 19.469 53.81 44 36 36 36 22 51 1 1 1 1 1 1 4317.6 2304 1287 2289 3661 4792 4792 1 CLGIPAR Unmodified 785.42179 0.42179324 393 P00488;P16452-3;P16452;P16452-2 F13A1;EPB42 Coagulation factor XIII A chain;Erythrocyte membrane protein band 4.2 yes no 0 0 0 0 0 7 0 1 41.768 41.768 2 0.0073534 10276 TMT1-6 128.89 74.37 252.49 272.39 254.02 217.48 358.95 282.91 238 276 260 219 362 275 1 1 1 1 1 1 26253 2305 393 2290 3662 4793 4793 1 CLHPLANETFVAK Unmodified 1498.7602 0.76023401 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 7 0 1 49.436 49.436 3 6.0121E-05 13269 TMT1-6 97.463 76.623 183.59 234.36 324.92 166.44 232.91 274.78 174 237 321 174 239 264 1 1 1 1 1 1 38840 2306 1735 2291 3663 4794 4794 1 CLIEILASR Unmodified 1073.5903 0.59031513 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 8 0 1 67.508 67.508 2 0.00021751 20488 TMT1-7 145.16 92.219 200.85 237.58 126.44 170.75 225.77 233.41 189 238 138 167 231 225 1 1 1 1 1 1 32488 2307 555 2292 3664 4795 4795 1 CLMQQGIK Unmodified 976.48341 0.48340722 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 8 0 1 46.212 46.212 2 0.0017123 12078 TMT1-7 140.53 95.215 206.32 417.03 316.83 220.87 328.36 407.44 196 410 326 225 337 391 2 2 2 2 2 2 32857 2308 2112 2293 3665 4796;4797 4796 2 CLQSGTLFR Unmodified 1080.5386 0.53861391 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 8 0 1 49.18 49.18 2 0.0017607 13271 TMT1-7 113.74 88.796 99.574 122.27 112.79 109.59 150.11 111.91 94 123 116 109 152 109 1 1 1 1 1 1 14526 2309 536 2294 3666 4798 4798 1 CLSAAEEK Unmodified 906.41168 0.41168206 519;521 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 3 1 1 1 38.063 38.063 2 0.0013136 9521 TMT1-3 143.01 74.095 330.69 379.11 364.9 368.94 380.71 512.54 312 383 375 364 397 491 2 2 2 2 2 2 140400 2310 519;521 2295 3667;3668 4799;4800 4800 2 CLSSLKDER Unmodified 1106.539 0.53900784 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 6 0 1 39.322 39.322 3 0.0059041 9907 TMT1-5 79.311 48.439 309.56 322.12 359.06 287.73 416.75 455.02 292 328 363 290 426 438 1 1 1 1 1 1 24797 2311 1260 2296 3669 4801 4801 1 CLTAIVK Unmodified 803.45751 0.45751004 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 8 0 1 51.332 51.332 2 0.010436 14123 TMT1-7 108.09 26.128 222.18 315.8 261.72 232.42 237.59 507.03 210 315 270 231 254 482 1 1 1 1 1 1 24504 2312 461 2297 3670 4802 4802 1 CLVGEFVSDALLVPDK Unmodified 1760.9019 0.90187244 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10;P05067-2 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 6 0 1 83.284 83.284 3 0.00066128 27235 TMT1-5 68.173 43.38 54.172 49.769 50.371 34.845 79.778 67.014 51 51 51 36 80 65 1 1 1 1 1 1 7129.9 2313 482 2298 3671 4803 4803 1 CLYASVLTAQPR Unmodified 1377.7075 0.70747015 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 8 0 1 55.897 55.897 2 0.0009602 15950 TMT1-7 92.611 66.492 23.07 67.049 33.196 36.289 57.446 45.265 22 65 36 36 58 44 1 1 1 1 1 1 7509.9 2314 685 2299 3672 4804 4804 1 CMVQVGVISGFK Unmodified 1323.6679 0.66791353 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 64.685 64.685 3 0.0021264 17588 TMT1-8 66.498 45.247 77.33 117.06 68.679 64.952 106.34 136.61 73 116 73 65 109 131 1 1 1 1 1 1 4483.1 2315 471 2300 3673 4805 4805 1 CNEIINWLDK Unmodified 1303.6231 0.62307182 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 0 6.5 0.5 1 1 69.818 69.818 2;3 0.00016009 21380 TMT1-6 133.07 114.29 123.14 121.63 119.62 148.8 194.12 118.12 116 124 124 146 196 116 2 2 2 2 2 2 19885 2316 641 2301 3674;3675 4806;4807 4807 2 CNPDSNSANCLEEK Unmodified 1636.6457 0.64573411 624 P10124 SRGN Serglycin yes yes 0 0 0 0 0 3 0 1 39.646 39.646 3 6.3131E-11 11195 TMT1-2 127.32 104.18 46.587 65.186 49.83 27.082 87.464 66.794 44 65 51 29 87 65 1 1 1 1 1 1 9891.6 2317 624 2302 3676 4808 4808 1 CNTCGEPITDR Unmodified 1321.5391 0.5390842 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 2 0 1 31.651 31.651 2 0.00045787 7598 TMT1-1 103.43 76.541 61.681 41.693 57.68 50.819 79.043 67.034 58 44 58 51 80 65 2 2 2 2 2 2 13914 2318 1881 2303 3677 4809;4810 4809 2 CNTPTYCDLGK Acetyl (N-term) 1369.5642 0.56423631 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 1 0 0 0 0 3 0 1 52.824 52.824 2 0.00031569 16448 TMT1-2 114.36 74.654 145.75 233.81 192.28 112.82 133.18 174.22 138 232 196 116 138 167 2 2 2 2 2 2 69667 2319 2959 2304 3678 4811;4812 4812 2 CNVSFLLSEDGSGK Unmodified 1511.6926 0.69260795 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6 0 1 61.111 61.111 3 0.02625 18540 TMT1-5 46.68 26.017 61.248 94.455 85.627 56.809 78.768 67.042 58 94 87 58 80 65 1 1 1 1 1 1 8442.1 2320 787 2305 3679 4813 4813 1 CNYLGHYSDPMYR Unmodified 1674.6919 0.69189644 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5 0 1 45.646 45.646 3 0.00021922 12296 TMT1-4 87.498 80.459 68.766 93.96 84.917 72.577 114.38 105.47 65 94 87 73 116 102 1 1 1 1 1 1 14902 + 2321 32;554 2306 3680 4814 4814 1 CPALYWLSGLTCTEQNFISK Unmodified 2387.129 0.12898862 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 9 0 2 89.898 89.898 3;4 4.5359E-15 27442 TMT1-8 99.021 75.884 39.147 50.788 50.025 42.938 57.418 67.652 37 51 51 43 59 65 2 2 2 2 2 2 11111 2322 637 2307 3681;3682 4815;4816 4815 2 CPEALFQPSFLGMESCGIHETTFNSIMK Unmodified 3230.4545 0.45449822 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 8.5 0.5 1 1 78.049 78.049 4;5 3.2704E-13 22700 TMT1-8 72.425 59.787 146.51 142.02 142.49 139.71 140.08 150.57 138 145 146 138 145 145 3 3 3 3 3 3 32695 2323 1357;1479 2308 3683;3684 4817;4818;4819 4819 3 CPELFAPEQGSLDCSDTR Unmodified 2080.883 0.88300427 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 3.5 0.5 1 1 58.164 58.164 3 3.9702E-19 17448 TMT1-3 130.39 125.53 100.93 107.89 76.639 65.974 84.87 90.32 95 109 80 66 87 87 2 2 2 2 2 2 32112 2324 733 2309 3685;3686 4820;4821 4821 2 CPLLKPWALTFSYGR Unmodified 1807.9443 0.94434638 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 9 0 1 71.787 71.787 3 1.4384E-05 20372 TMT1-8 86.214 69.066 358.16 426.74 396.59 343.37 477.63 587.59 338 430 406 344 491 564 1 1 1 1 1 1 61631 2325 459 2310 3687 4822 4822 1 CPLPGTAAFK Unmodified 1060.5376 0.53755128 1797 Q14766;Q14766-4;Q14766-2;Q14766-5 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 8 0 2 52.627 52.627 2;3 0.00066753 14629 TMT1-7 96.143 64.771 107.72 136.66 174.14 121 162.91 180.84 102 138 174 123 167 174 2 2 2 2 2 2 14653 2326 1797 2311 3688;3689 4823;4824 4824 2 CPNLTYLNLSGNK Unmodified 1492.7344 0.73441319 2534 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 0 8 0 1 60.06 60.06 3 5.1067E-06 17574 TMT1-7 87.498 82.594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2327 2534 2312 3690 4825 4825 1 CPTCPDACTFK Unmodified 1355.5308 0.5308277 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 5.5 0.5 1 1 44.556 44.556 2;3 0.00020818 11975 TMT1-5 107.95 87.648 254.81 272.73 224.29 203.88 246.2 294.65 240 276 232 203 254 283 2 2 2 2 2 2 30103 2328 484 2313 3691;3692 4826;4827 4827 2 CQDEQQYAR Unmodified 1196.488 0.4880349 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 2 0 1 26.761 26.761 2 1.0202E-05 5718 TMT1-1 157.96 133.8 69.023 79.564 53.947 82.771 77.281 75.613 65 80 58 80 80 73 1 1 1 1 1 1 16252 2329 2112 2314 3693 4828 4828 1 CQHLQAEK Unmodified 1012.476 0.47601365 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.33 1.7 1 1 1 27.781 27.781 3 0.001531 5241 TMT1-4 102.55 54.542 916.03 1080.1 940.02 827.08 1338.4 947.86 864 1088 967 831 1347 925 4 4 4 4 4 4 125010 2330 1019 2315 3694;3695;3696 4829;4830;4831;4832 4831 4 CQHLQAEKK Unmodified 1140.571 0.57097667 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 6 0 1 27.715 27.715 4 0.043844 5443 TMT1-5 44.318 36.213 84.924 89.796 77.851 64.941 77.844 83.059 80 91 80 65 80 80 1 1 1 1 1 1 8700.6 2331 1019 2316 3697 4833 4833 1 CQLEINFNTLQTK Unmodified 1607.7977 0.79774172 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 7 0 2 64.241 64.241 3;4 2.961E-13 19109 TMT1-6 158.02 119.92 320.34 530.19 534.52 536.76 567.5 483.76 304 527 547 530 582 469 3 3 3 3 3 3 126390 2332 672;195;1022 2317 3698;3699 4834;4835;4836 4834 3 CQSLTEDLEFR Unmodified 1396.6293 0.62927941 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 3 0 1 56.681 56.681 2 0.00022393 17904 TMT1-2 107.18 90.507 69.265 56.492 32.858 52.866 48.842 60.434 65 58 36 51 51 58 1 1 1 1 1 1 9551.2 2333 816 2318 3700 4837 4837 1 CQYVTEK Unmodified 926.41677 0.41676744 459;609 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 0 4.5 0.5 1 1 37.09 37.09 2 0.0081516 9185 TMT1-3 119.27 95.244 345.71 544.46 406.22 407.16 600.54 547.84 327 540 424 405 610 530 2 2 2 2 2 2 62714 2334 459;609 2319 3701;3702 4838;4839 4838 2 CSGPGLER Unmodified 874.3967 0.3967007 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3 0 1 28.653 28.653 2 0.00078967 6757 TMT1-2 148.04 65.738 276.15 394.14 322.75 256.78 492.12 372.92 261 393 332 261 494 363 2 2 2 2 2 2 70757 2335 831 2320 3703 4840;4841 4840 2 CSGPGLSPGMVR Unmodified 1216.5693 0.56926211 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 0 1 41.7 41.7 2 1.36E-05 10857 TMT1-5 115.23 98.136 91.874 130.89 137.25 84.09 149.97 150.29 87 131 138 87 152 145 1 1 1 1 1 1 13131 2336 831 2321 3704 4842 4842 1 CSNPAVVFVTR Unmodified 1248.6285 0.62849155 682 P13501 CCL5 C-C motif chemokine 5;RANTES(3-68);RANTES(4-68) yes yes 0 0 0 0 0 8 0 1 50.671 50.671 2 0.0017063 13870 TMT1-7 96.745 57.035 61.505 80.059 54.688 66.327 77.524 90.53 58 80 58 65 80 87 1 1 1 1 1 1 8103.9 2337 682 2322 3705 4843 4843 1 CSQAVYAAEK Unmodified 1125.5125 0.51245874 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 4 0 1 38.545 38.545 3 0.0037539 9744 TMT1-3 53.252 31.054 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2338 830 2323 3706 4844 4844 1 CSVNLANKR Unmodified 1060.5448 0.54476192 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 1 8 0 1 33.092 33.092 3 0.0017864 6957 TMT1-7 96.665 46.312 161 194.56 187.04 111.73 207.78 196.61 152 196 189 116 210 190 1 1 1 1 1 1 14938 2339 1735 2324 3707 4845 4845 1 CTIQVTHLAQEFPEIIIQK Unmodified 2267.1984 0.19838882 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 7 0 1 72.571 72.571 3 2.9453E-05 22371 TMT1-6 73.057 57.465 30.674 35.494 44.395 20.857 28.855 15.167 29 36 44 22 29 15 1 1 1 1 1 1 6239.1 2340 740 2325 3708 4846 4846 1 CTKEEHLCTQR Unmodified 1460.65 0.65003163 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 5 0 1 26.465 26.465 4 0.00025146 4673 TMT1-4 100.04 94.327 223.92 275.5 183.52 244.52 306.6 308.92 211 276 196 239 314 298 2 2 2 2 2 2 22879 2341 519;520 2326 3709 4847;4848 4847 2 CTQDLGNSTK Unmodified 1122.4975 0.49753696 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.5 0.5 1 1 34.202 34.202 3 0.0001391 8005 TMT1-3 108.9 78.649 376.96 395.93 509.11 285.67 457.61 303.54 356 404 506 297 460 297 2 2 2 2 2 2 55856 2342 3010 2327 3710;3711 4849;4850 4849 2 CTSYPDGSWK Unmodified 1199.4917 0.4917233 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 6 0 2 46.681 46.681 2;3 0.00019052 12806 TMT1-5 129.85 71.175 356.94 463.09 390.97 274.97 587.31 470.4 337 464 400 283 589 457 2 2 2 2 2 2 98679 2343 554 2328 3712;3713 4851;4852 4851 2 CTVIVNNK Unmodified 946.4906 0.49060109 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 7 0 1 39.729 39.729 2 0.012693 9489 TMT1-6 96.253 47.692 69.214 56.35 41.547 52.333 49.673 36.959 65 58 44 51 51 36 1 1 1 1 1 1 3535 2344 740 2329 3714 4853 4853 1 CVALCDAMVAK Oxidation (M) 1252.5614 0.56139954 613 P0C6X5 yes yes 0 0 1 0 0 6 0 1 60.633 60.633 3 0.026222 18356 TMT1-5 62.303 49.166 243.26 270.1 365.01 280.25 388.82 334.29 230 275 365 283 395 324 1 1 1 1 1 1 77028 2345 613 2330 3715 4854 4854 112 1 CVAPPALR Unmodified 882.47456 0.47455709 678 P13224;P13224-2 GP1BB Platelet glycoprotein Ib beta chain yes no 0 0 0 0 0 7 0 1 41.43 41.43 2 0.0087155 10104 TMT1-6 101.47 66.27 160.92 186.79 206.71 117.81 229.28 171.48 152 189 207 123 230 167 1 1 1 1 1 1 34628 2346 678 2331 3716 4855 4855 1 CVAVGPGGYAVVVCIGQIVLLK Unmodified 2271.2483 0.2483159 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 9 0 1 91.789 91.789 4 0.014288 28135 TMT1-8 35.044 18.738 39.32 43.715 26.905 37.092 34.668 37.387 37 44 29 36 36 36 1 1 1 1 1 1 3106.2 2347 250 2332 3717 4856 4856 1 CVDIDECTQVQHLCSQGR Unmodified 2203.9409 0.94087028 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3 0 1 45.498 45.498 3 2.6318E-10 13511 TMT1-2 109.42 91.826 30.727 44.277 27.942 14.023 37.545 14.919 29 44 29 15 37 15 1 1 1 1 1 1 8343 2348 1797 2333 3718 4857 4857 1 CVELVHEEMQR Unmodified 1428.649 0.648969 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 3 0 1 41.163 41.163 3 0.0033844 11777 TMT1-2 73.632 66.593 30.495 66.294 48.414 59.182 70.523 90.73 29 65 51 58 73 87 1 1 1 1 1 1 6791.9 2349 68 2334 3719 4858 4858 1 CVNIHQHLLEER Unmodified 1546.7674 0.76744465 2030 Q6P3X3 TTC27 Tetratricopeptide repeat protein 27 yes yes 0 0 0 0 0 5 0 1 36.727 36.727 4 0.0073759 8723 TMT1-4 59.898 46.219 61.54 72.601 55.111 66.879 46.878 98.866 58 73 58 65 51 94 1 1 1 1 1 1 4258.1 2350 2030 2335 3720 4859 4859 1 CVNTTLQIK Unmodified 1075.5696 0.56957969 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 7.33 0.471 2 1 48.963 48.963 2;3 0.00033149 13089 TMT1-6 140.75 116.6 384.72 504.04 375.38 396.54 507.46 531.31 363 504 393 392 520 512 3 3 3 3 3 3 89490 2351 1555;1556 2336 3721;3722;3723 4860;4861;4862 4860 3 CVQTAHNILK Unmodified 1182.6179 0.61792687 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 7 0 1 38.694 38.694 3 0.0018883 9071 TMT1-6 84.658 59.273 99.511 153.39 97.148 78.81 151.02 126.81 94 152 102 80 152 123 1 1 1 1 1 1 8199.2 2352 2263 2337 3724 4863 4863 1 CVSCLPGQR Unmodified 1075.4903 0.49028351 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.5 0.5 1 1 37.079 37.079 2 1.0885E-05 8932 TMT1-5 157.33 109.73 199.79 286.44 262.79 201.97 283.7 271.2 189 286 268 204 289 262 2 2 2 2 2 2 67441 2353 3010 2338 3725;3726 4864;4865 4864 2 CVSTLLDLIQTK Unmodified 1389.7538 0.75375164 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 9 0 1 79.362 79.362 3 0.00069405 23364 TMT1-8 74.611 53.833 23.164 36.011 43.723 36.089 34.714 37.385 22 36 44 36 36 36 1 1 1 1 1 1 4912.3 2354 1467;1637 2339 3727 4866 4866 1 CVVVGDGAVGK Unmodified 1059.5383 0.53827956 1522;1363;717;1466 P60953;P60953-1;Q9H4E5-2;P17081;Q9H4E5;P15153;P63000;P63000-2;P60763;P84095 CDC42;RHOJ;RHOQ;RAC2;RAC1;RAC3;RHOG Cell division control protein 42 homolog;Rho-related GTP-binding protein RhoJ;Rho-related GTP-binding protein RhoQ;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Rho-related GTP-binding protein RhoG no no 0 0 0 0 0 5.5 0.5 1 1 45.688 45.688 2 1.7302E-07 12391 TMT1-5 153.05 98.269 335.85 511.99 287.66 344.54 586.17 471.5 317 507 310 341 591 458 2 2 2 2 2 2 79412 2355 1363;717;1466;1522 2340 3728;3729 4867;4868 4868 2 CYEMASHLR Oxidation (M) 1181.4958 0.49576282 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 0 4 1 1 1 28.435 28.435 3 0.0045565 6741 TMT1-2 90.761 87.783 99.56 114.68 121.59 116.6 156.32 135.19 94 116 124 116 159 131 3 3 3 3 3 3 11634 2356 540 2341 3730;3731 4869;4870;4871 4870 97 3 CYEMASHLR Unmodified 1165.5008 0.5008482 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 0 4 1 1 1 35.34 35.34 3 4.6013E-07 8075 TMT1-4 165.15 113.96 230.43 343.42 295.21 292.48 366.37 423.41 218 342 305 290 377 407 3 3 3 3 3 3 82269 2357 540 2341 3732;3733 4872;4873;4874 4873 3 CYVLSQNLR Unmodified 1151.5757 0.5757277 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7 0 1 46.882 46.882 2 0.046204 12305 TMT1-6 67.507 52.99 46.407 73.319 73.19 26.117 64.73 59.981 44 73 73 29 65 58 1 1 1 1 1 1 6197.9 2358 856 2342 3734 4875 4875 1 DAAAEYDELAEPQDFQDDPDIIAFR Unmodified 2853.2617 0.26171317 2888 Q9UJW0-3;Q9UJW0;Q9UJW0-2 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 0 2 0 1 77.719 77.719 3 2.8521E-05 25400 TMT1-1 59.429 56.154 0 7.448 0 0 0 7.462 0 7 0 0 0 7 0 1 0 0 0 1 2125 2359 2888 2343 3735 4876 4876 1 DAADKPR Unmodified 771.38752 0.38751622 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 1 7 0 1 33.849 33.849 3 0.045504 7144 TMT1-6 63.306 24.284 1814.8 11108 2787.7 2748.7 3264.1 3616.5 1759 10599 3314 2723 3360 3480 1 1 1 1 1 1 139890 2360 1681 2344 3736 4877 4877 1 DAAEFELFFR Unmodified 1243.5873 0.58733824 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 5 0 1 75.18 75.18 2 0.037389 23910 TMT1-4 66.962 36.392 61.265 110.69 69.113 65.62 69.421 114.21 58 109 73 65 73 109 1 1 1 1 1 1 10868 2361 2053 2345 3737 4878 4878 1 DAAFEALGTALK Unmodified 1205.6292 0.62920306 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 6 0 1 67.431 67.431 2 1.4087E-08 21016 TMT1-5 145.55 106.55 68.512 117 108.11 55.212 92.437 97.566 65 116 109 58 94 94 1 1 1 1 1 1 14330 2362 1744 2346 3738 4879 4879 1 DAAINSLLQMGEEP Unmodified 1486.6974 0.69735898 2612 Q9H0E2;Q9H0E2-2 TOLLIP Toll-interacting protein yes no 0 0 0 0 0 4 0 1 79.568 79.568 2 2.4634E-05 25965 TMT1-3 101.93 83.149 0 15.854 6.3241 6.7042 30.296 22.587 0 15 7 7 30 22 0 1 1 1 1 1 5560.7 2363 2612 2347 3739 4880 4880 1 DAALATALGDKK Unmodified 1172.6401 0.6401021 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 6.67 0.471 1 2 50.685 50.685 3;4 1.7492E-07 13783 TMT1-6 121.04 97.665 1242.5 2308.9 1476.9 1633.4 1979.8 2026.5 1177 2272 1566 1609 2031 1954 5 5 5 5 5 5 157620 2364 816 2348 3740;3741;3742 4881;4882;4883;4884;4885 4883 5 DAANLLNDALAIR Unmodified 1368.7361 0.73612775 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 6 0 1 71.911 71.911 2 0.00044976 22783 TMT1-5 71.976 56.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2365 1613 2349 3743 4886 4886 1 DAAQCSGGDVAR Unmodified 1205.5095 0.50949863 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 2.5 0.5 1 1 25.564 25.564 2 1.0115E-07 5310 TMT1-1 128.68 100.66 45.454 89.917 38.886 45.254 48.642 76.43 43 88 43 44 51 73 2 2 2 1 1 1 17245 2366 1067 2350 3744;3745 4887;4888 4887 2 DAASLESQLQDTQELLQEETR Unmodified 2403.1401 0.14014147 1020 P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 0 3 0 1 76.074 76.074 3 0.0089585 25463 TMT1-2 28.418 19.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2367 1020 2351 3746 4889 4889 1 DACLNAR Unmodified 818.37049 0.37048595 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 2.5 0.5 1 1 28.137 28.137 2 0.013371 6312 TMT1-1 102.77 49.422 92.058 123.85 112.37 117.69 127.75 112.55 87 124 116 116 131 109 2 2 2 2 2 2 22615 2368 748 2352 3747;3748 4890;4891 4890 2 DADETKEWIEEK Unmodified 1491.6729 0.67291837 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 3 0 1 55.259 55.259 3 0.011014 17353 TMT1-2 63.709 28.406 184.17 260.81 203.92 199.45 197.71 281.11 174 260 212 197 207 269 1 1 1 1 1 1 13121 2369 1737 2353 3749 4892 4892 1 DADIGVAEAER Unmodified 1144.536 0.53603095 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 2 0 1 41.016 41.016 2 0.012064 11421 TMT1-1 77.14 38.39 53.971 64.318 71.933 65.594 61.852 90.977 51 65 73 65 65 87 1 1 1 1 1 1 11790 2370 1767 2354 3750 4893 4893 1 DADPILISLR Unmodified 1111.6237 0.62372375 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 4 0 1 62.8 62.8 2 0.0032793 19284 TMT1-3 96.665 73.142 69.066 48.384 73.163 57.726 69.528 121.67 65 51 73 58 73 116 1 1 1 1 1 1 16681 2371 2512 2355 3751 4894 4894 1 DADSQNPDAPEGK Unmodified 1342.5637 0.56370227 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 2 0 1 33.577 33.577 3 3.1229E-05 8396 TMT1-1 101.32 82.488 61.594 80.306 39.497 66.938 93.217 59.168 58 80 44 65 94 58 1 1 1 1 1 1 7210.5 2372 1287 2356 3752 4895 4895 1 DADSQNPDAPEGKR Unmodified 1498.6648 0.6648133 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 2 0 1 27.864 27.864 3 0.0028642 6160 TMT1-1 66.215 54.01 23.378 29.051 13.687 15.317 13.938 30.516 22 29 15 15 15 29 1 1 1 1 1 1 1308.9 2373 1287 2357 3753 4896 4896 1 DADVQFLASVLPPDTDPAFFEHLR Unmodified 2699.3231 0.32313164 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 6 0 1 85.044 85.044 4 0.034746 27879 TMT1-5 29.154 20.866 23.28 28.779 30.368 5.5753 14.13 37.973 22 29 30 7 15 36 1 1 1 1 1 1 6076.2 2374 2053 2358 3754 4897 4897 1 DADVQNFVSFISK Unmodified 1468.7198 0.71980898 1088 P42126;P42126-2 ECI1 Enoyl-CoA delta isomerase 1, mitochondrial yes no 0 0 0 0 0 7 0 1 75.564 75.564 3 1.8845E-08 23604 TMT1-6 103.83 93.735 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2375 1088 2359 3755 4898 4898 1 DAEDAMDAMDGAVLDGR Unmodified 1750.7138 0.71381368 1549 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 0 0 0 0 0 2 0 1 66.469 66.469 3 3.8871E-10 21247 TMT1-1 112.57 99.145 30.979 21.234 5.1163 23.067 35.826 22.43 29 22 7 22 36 22 1 1 1 1 1 1 8076.2 2376 1549 2360 3756 4899 4899 1 DAEEWVQQLK Unmodified 1244.6037 0.60371659 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 5 0 1 64.148 64.148 3 0.00016174 19507 TMT1-4 105.4 49.996 369.03 396.16 399.8 286.86 334.02 428.59 348 402 405 290 346 411 2 2 2 2 2 2 48180 2377 289 2361 3757 4900;4901 4900 2 DAEGILEDLQSYR Unmodified 1507.7155 0.71545188 2751 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 0 3 0.816 1 1 1 70.935 70.935 2;3 9.5431E-17 23536 TMT1-2 172.76 147.32 134.75 154.83 123.7 108.32 183.12 157.64 127 156 128 109 185 152 4 4 4 4 4 3 51608 2378 2751 2362 3758;3759;3760 4902;4903;4904;4905 4904 4 DAEMPATEK Oxidation (M) 1006.4277 0.42772606 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 2 0 1 31.873 31.873 3 0.0094879 7738 TMT1-1 46.819 29.383 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2379 831 2363 3761 4906 4906 157 1 DAEMPATEK Unmodified 990.43281 0.43281144 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.33 0.471 2 1 39.065 39.065 2 5.71E-05 10646 TMT1-1 119.75 74.665 161.47 157.02 139.39 163.1 184.82 156.76 152 160 145 160 189 152 2 2 2 2 2 2 21390 2380 831 2363 3762;3763;3764 4907;4908;4909;4910 4907 4 DAEMPATEKDLAEDAPWK Unmodified 2015.9146 0.91462198 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.5 0.5 1 1 60.038 60.038 4 4.6606E-08 17900 TMT1-4 100.04 79.12 291.49 345.44 309.93 292.64 369.66 540.57 275 348 319 291 384 517 3 3 3 3 3 3 101320 2381 831 2364 3765;3766 4911;4912;4913 4913 3 DAFDRNPELQNLLLDDFFK Unmodified 2309.1328 0.13281167 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 6 0 2 83.666 83.666 3;4 1.7872E-10 27358 TMT1-5 103.17 82.165 154.11 141.76 127.24 117.19 164.96 126.41 145 145 131 117 167 123 2 2 2 2 2 2 23186 2382 1260 2365 3767;3768 4914;4915 4915 2 DAFDTLFDHAPDK Unmodified 1490.6678 0.66777341 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2;Q9NVD7 PARVB;PARVA Beta-parvin;Alpha-parvin yes no 0 0 0 0 0 4.25 0.433 3 1 63.248 63.248 2;3;4 2.1721E-05 19480 TMT1-3 88.338 62.219 878.73 955.16 1184.2 861.48 1060.3 1081.6 830 972 1187 871 1087 1043 5 5 5 5 5 5 266010 2383 2682 2366 3769;3770;3771;3772 4916;4917;4918;4919;4920;4921 4918 6 DAFDTLFDHAPDKLSVVK Unmodified 2017.0157 0.015656649 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 1 6.5 0.5 1 1 68.553 68.553 4 1.0617E-24 20822 TMT1-6 143.67 129.42 818.22 958.81 891.41 781.2 793.79 1121.2 772 967 913 777 830 1073 4 4 4 4 4 4 124370 2384 2682 2367 3773;3774 4922;4923;4924;4925 4924 4 DAFLVFR Unmodified 866.46504 0.46503826 3053 Q9Y6D6;Q9Y6D5 ARFGEF1;ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 1;Brefeldin A-inhibited guanine nucleotide-exchange protein 2 yes no 0 0 0 0 0 8 0 1 62.949 62.949 2 0.016071 18687 TMT1-7 100.67 67.699 38.027 50.731 57.976 34.667 65.143 36.517 36 51 58 36 65 36 1 1 1 1 1 1 7929.5 2385 3053 2368 3775 4926 4926 1 DAFPVAGQK Unmodified 931.47633 0.47633123 1302;1301 P54727;P54725;P54725-3;P54725-2 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A no no 0 0 0 0 0 6 0 1 45.953 45.953 3 0.0010375 12527 TMT1-5 97.431 49.828 84.569 147.09 88.88 80.294 98.304 136.84 80 145 94 80 102 131 1 1 1 1 1 1 10735 2386 1302;1301 2369 3776 4927 4927 1 DAFQEVFGLAVVVGEAGQSNIAPQPVGYAAGLK Unmodified 3301.6983 0.69829226 2437 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5;Q96M27-4 PRRC1 Protein PRRC1 yes no 0 0 0 0 0 8 0 1 96.958 96.958 4 1.4546E-09 31608 TMT1-7 70.151 54.263 7.3717 15.288 10.455 11.063 17.935 11.214 7 15 11 11 18 11 1 1 1 1 1 1 2492 2387 2437 2370 3777 4928 4928 1 DAFSYNCLQTPIITDFSPK Unmodified 2216.046 0.0459705 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 7 0 1 77.434 77.434 3 0.00050984 24298 TMT1-6 49.188 41.099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2388 2121 2371 3778 4929 4929 1 DAFVAIVQSVK Unmodified 1175.655 0.65502388 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 8.67 0.471 1 2 70.972 70.972 2;3 6.4747E-08 20118 TMT1-8 135.99 81.437 644.26 1027.4 675.21 631.36 961.04 1081.2 609 1017 710 631 982 1040 4 4 4 4 4 4 147760 2389 555 2372 3779;3780;3781 4930;4931;4932;4933 4933 4 DAFVILVENALR Unmodified 1358.7558 0.75580056 2278 Q8WWI5-3;Q8WWI5-2;Q8WWI5 SLC44A1 Choline transporter-like protein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 88.824 88.824 2;3 0.0034869 28663 TMT1-7 67.456 39.793 39.395 43.923 14.136 31.562 20.484 31.395 37 44 15 30 22 30 2 2 1 2 2 2 3938 2390 2278 2373 3782;3783 4934;4935 4935 2 DAFVYAIK Unmodified 925.49092 0.49091866 2696 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 0 0 7 0 1 59.793 59.793 3 0.0048932 17382 TMT1-6 85.212 61.239 61.275 110.72 67.294 82.127 69.228 67.315 58 109 72 80 72 65 1 1 1 1 1 1 5663.7 2391 2696 2374 3784 4936 4936 1 DAGAGLLAAAMIAVVPGYISR Unmodified 2015.0874 0.087381804 1141 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 0 9 0 1 93.211 93.211 3 5.0076E-09 28606 TMT1-8 77.391 53.104 15.855 21.975 21.751 14.688 21.809 15.368 15 22 22 15 22 15 1 1 1 1 1 1 2182.4 2392 1141 2375 3785 4937 4937 1 DAGEGGLSLAIEGPSK Unmodified 1499.7468 0.74675201 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.5 1.5 1 2 1 59.43 59.43 3;4 3.0869E-20 17692 TMT1-4 161.82 127.38 2685 3234.9 3153 2526.7 3160.8 3935 2535 3260 3210 2538 3262 3776 6 6 6 6 6 6 863460 2393 831 2376 3786;3787;3788;3789 4938;4939;4940;4941;4942;4943 4943 6 DAGEGLLAVQITDPEGK Unmodified 1711.8628 0.8628444 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 0 1 67.362 67.362 3 5.046E-19 21062 TMT1-3 136.26 115.03 99.386 130.38 137.56 77.104 113.66 120.41 94 131 138 80 116 116 1 1 1 1 1 1 29231 2394 831 2377 3790 4944 4944 1 DAGEGLLAVQITDPEGKPK Unmodified 1937.0106 0.010571271 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.25 1.92 1 2 1 61.088 61.088 3;4 3.2691E-23 18030 TMT1-4 132.13 102.04 2236.9 2732.2 2250.5 1848.1 2292.1 2971.6 2110 2745 2318 1853 2370 2849 6 6 6 6 6 6 515860 2395 831 2378 3791;3792;3793;3794 4945;4946;4947;4948;4949;4950 4946 6 DAGIEPGPDTYLALLNAYAEK Unmodified 2220.095 0.095029182 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 86.337 86.337 3 2.775E-07 28373 TMT1-5 82.482 78.819 23.162 36.006 44.053 28.678 20.91 22.855 22 36 44 29 22 22 1 1 1 1 1 1 6173.5 2396 1101 2379 3795 4951 4951 1 DAGMQLQGYR Unmodified 1137.5237 0.52369213 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 4 0 1 42.318 42.318 2 0.0051665 11261 TMT1-3 91.265 64.572 68.63 124.88 81.612 105.13 79.331 199.21 65 123 87 102 87 189 1 1 1 1 1 1 9955.5 2397 396 2380 3796 4952 4952 1 DAGPLLISLK Unmodified 1025.6121 0.61209643 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 7.67 0.471 1 2 67.041 67.041 2;3 1.7384E-05 20308 TMT1-6 152.28 54.311 1583.3 1564.5 2181.1 1992.4 1754.4 4940.9 1495 1605 2192 1972 1927 4682 5 5 5 5 5 5 456750 2398 971 2381 3797;3798;3799 4953;4954;4955;4956;4957 4954 5 DAGQISGLNVLR Unmodified 1241.6728 0.67279921 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 55.037 55.037 2 5.8739E-07 16101 TMT1-5 120.55 59.659 130.2 158.7 165.1 121.54 162.89 180.84 123 160 167 123 167 174 1 1 1 1 1 1 65130 2399 1058 2382 3800 4958 4958 1 DAGTIAGLNVLR Unmodified 1198.667 0.66698555 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 6.5 0.5 1 1 59.241 59.241 2 3.4541E-19 17816 TMT1-5 191.24 165.07 1179.6 1773.3 1503.1 1262.2 1758.5 1839.8 1116 1765 1545 1267 1797 1773 4 4 4 4 4 4 505080 2400 641 2383 3801;3802 4959;4960;4961;4962 4960 4 DAGTIAGLNVMR Unmodified 1216.6234 0.62340617 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7 0 1 55.397 55.397 2 4.5696E-09 15658 TMT1-6 123.11 97.218 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2401 640 2384 3803 4963 4963 1 DAGVIAGLNVLR Unmodified 1196.6877 0.68772099 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 6.67 0.471 1 2 64.239 64.239 2;3 8.5387E-08 19124 TMT1-6 123.01 85.068 253.65 272.56 239.13 211.14 278.35 231.91 239 276 246 211 283 225 3 3 3 3 3 3 204210 2402 618 2385 3804;3805;3806 4964;4965;4966 4965 3 DAGYEFDICFTSVQK Unmodified 1778.7822 0.78215124 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 0 5.33 0.471 2 1 70.154 70.154 3;4 2.6524E-08 21857 TMT1-4 114.7 105.05 253.95 379.34 278.76 246.51 364.1 368.04 240 377 290 247 371 355 4 4 4 4 4 4 24877 2403 782 2386 3807;3808;3809 4967;4968;4969;4970;4971 4967 5 DAGYGGLSLSIEGPSK Unmodified 1549.7624 0.76240208 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.33 0.471 2 1 62.266 62.266 2;3;4 6.1937E-28 18799 TMT1-4 180.09 147 244.57 462.98 341.5 329.53 342.18 408.11 232 456 356 326 355 392 3 3 3 3 3 3 89020 2404 831 2387 3810;3811;3812 4972;4973;4974 4972 3 DAGYGGLSLSIEGPSKVDINTEDLEDGTCR Unmodified 3167.4565 0.45646659 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.5 0.5 1 1 68.288 68.288 4 9.0447E-27 21136 TMT1-4 114.24 103.44 122.59 158.94 181.33 97.737 156.4 188.48 116 160 181 102 160 181 2 2 2 2 2 2 46763 2405 831 2388 3813;3814 4975;4976 4976 2 DAHKSEVAHR Unmodified 1148.5687 0.56866849 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 3.67 2.05 1 1 1 20.423 20.423 4 9.2858E-05 3681 TMT1-3 119.22 70.226 41.336 50.76 42.89 32.864 34.496 48.052 39 51 44 33 36 46 4 4 4 4 4 4 2396.8 + 2406 28 2389 3815;3816;3817 4977;4978;4979;4980 4979 4 DAHSQGEVVSCLEK Unmodified 1557.7093 0.70932065 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 0 4 0 1 41.782 41.782 3 3.7611E-05 11029 TMT1-3 71.98 50.729 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2407 2327 2390 3818 4981 4981 1 DAIAQAVR Unmodified 842.46102 0.46101552 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 4.5 0.5 1 1 36.805 36.805 2 0.0016379 8759 TMT1-4 86.095 31.89 129.7 214.52 201.18 159.57 176.52 250.8 123 213 205 160 184 240 1 1 1 1 1 1 74378 2408 937 2391 3819;3820 4982;4983 4983 2 DAIASLR Unmodified 744.413 0.41300269 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 0 9 0 1 56.897 56.897 2 0.036156 14440 TMT1-8 86.086 0 108.15 152.97 87.362 103.77 133.34 181.68 102 152 94 102 138 174 1 1 1 1 1 1 30679 2409 1707 2392 3821 4984 4984 1 DAILDALENLTAEELK Unmodified 1756.9095 0.90946024 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 4.5 0.5 1 1 95.164 95.164 3 1.9056E-05 31497 TMT1-4 85.734 67.003 51.879 62.457 64.39 43.356 47.772 43.409 49 63 65 44 49 42 3 3 3 3 3 3 4755.4 2410 2914 2393 3822;3823 4985;4986;4987 4986 3 DAILDALENLTAEELKK Unmodified 1885.0044 0.004423261 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 1 6 0.816 1 1 1 87.037 87.037 4 4.3923E-09 28617 TMT1-5 104.21 77.842 199.48 352.51 258.11 218.08 313.84 316.17 189 348 268 219 320 305 4 4 4 4 4 4 25662 2411 2914 2394 3824;3825;3826 4988;4989;4990;4991 4990 4 DAISGIGTDEK Unmodified 1104.5299 0.52988294 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 3 0.816 1 1 1 46.766 46.766 2;3 1.3347E-06 12851 TMT1-3 140.17 65.793 338.36 538.94 383.95 308.19 528.73 547.76 320 534 399 312 537 528 3 3 3 3 3 3 50543 2412 555 2395 3827;3828;3829 4992;4993;4994 4994 3 DALEETR Unmodified 832.39266 0.39266118 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 6 0 1 73.756 73.756 1 0.04675 23545 TMT1-5 20.282 20.282 30.814 35.884 20.49 22.584 12.798 54.001 29 36 22 22 15 51 1 1 1 1 1 1 2267.8 2413 2375 2396 3830 4995 4995 1 DALHSEK Unmodified 798.38718 0.38718187 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 4 0 1 28.255 28.255 3 0.00068843 5692 TMT1-3 87.284 41.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2414 228 2397 3831 4996 4996 1 DALIDELELELDQKDELIQK Unmodified 2369.2214 0.22135191 1742 Q13976-2 PRKG1 cGMP-dependent protein kinase 1 yes yes 0 0 0 0 1 4.5 0.5 1 1 84.851 84.851 4 2.2477E-13 27547 TMT1-4 108.49 94.029 61.016 140.22 85.871 89.772 68.824 99.306 58 137 88 88 73 95 3 3 2 3 3 3 8924.1 2415 1742 2398 3832;3833 4997;4998;4999 4999 3 DALLLIFANK Unmodified 1116.6543 0.6542956 1036 P36406-3;P36406-2;P36406 TRIM23 E3 ubiquitin-protein ligase TRIM23 yes no 0 0 0 0 0 9 0 1 77.993 77.993 2 1.3531E-05 22773 TMT1-8 138.4 0 322.8 464.9 356.87 337.46 336.68 496.74 305 463 371 334 353 475 3 3 3 3 3 3 28630 2416 1036 2399 3834 5000;5001;5002 5001 3 DALLLWCQMK Unmodified 1276.6308 0.63079974 1546;651 Q01082;Q01082-3;Q01082-2;O15020-2;O15020;P11277-2;P11277;P11277-3 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 0 0 0 0 0 9 0 1 73.576 73.576 3 0.027856 21088 TMT1-8 45.598 17.429 160.54 273.14 198.59 159.44 191.54 118.19 152 270 206 160 194 116 1 1 1 1 1 1 7781.1 2417 1546;651 2400 3835 5003 5003 1 DALLNWLK Unmodified 971.54402 0.54401687 61 O00329;P42338 PIK3CD;PIK3CB Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform;Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform yes no 0 0 0 0 0 8 0 1 73.933 73.933 2 0.0036694 23038 TMT1-7 130.27 48.724 53.889 71.647 79.423 57.613 55.696 67.701 51 72 80 58 58 65 1 1 1 1 1 1 6400.9 2418 61 2401 3836 5004 5004 1 DALNIETAIK Unmodified 1086.5921 0.59208927 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 5 0 1 58.349 58.349 2 1.155E-07 17311 TMT1-4 166.93 126.88 495.75 877.45 694.34 493.39 739.79 855.14 470 867 713 502 757 822 2 2 2 2 2 2 135800 2419 534 2402 3837 5005;5006 5006 2 DALNQATSQVESK Unmodified 1389.6736 0.67358707 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 4 0 1 47.311 47.311 2 4.6318E-11 13215 TMT1-3 111.31 102.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2420 2828 2403 3838 5007 5007 1 DALSDLALHFLNK Unmodified 1455.7722 0.7721789 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 8.5 0.5 1 1 77.925 77.925 3 2.8819E-11 24692 TMT1-7 140.14 105.25 230.58 335.2 276.79 182.68 335.08 384.86 218 334 283 188 341 370 3 3 3 3 3 3 48929 2421 1233 2404 3839;3840 5008;5009;5010 5009 3 DALSSVQESQVAQQAR Unmodified 1715.8438 0.84384029 436 P02656 APOC3 Apolipoprotein C-III yes yes 0 0 0 0 0 3.5 0.5 1 1 44.651 44.651 3 1.3563E-12 12116 TMT1-3 128.71 87.693 199.03 269.03 225.1 221.4 183.62 296.44 188 269 233 218 195 283 3 3 3 3 3 3 32878 2422 436 2405 3841;3842 5011;5012;5013 5012 3 DALTAEK Unmodified 746.38103 0.38103386 2678 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 0 0 0 0 0 3 1 1 1 39.35 39.35 2 7.557E-05 9856 TMT1-3 123.69 49.251 99.987 92.12 69.048 87.71 173.64 126.16 94 94 73 87 174 123 1 1 1 1 1 1 5258.6 2423 2678 2406 3843;3844 5014;5015 5015 2 DALTGHLR Unmodified 881.47191 0.47191456 1701 Q13422-8;Q9UKT9-3;Q9H2S9-2;Q9UKS7;Q13422;Q9UKT9;Q9UKS7-2;Q13422-7;Q9UKT9-7;Q9UKT9-4;Q9UKS7-7;Q9UKS7-6;Q9UKS7-4;Q9UKT9-8;Q13422-3;Q13422-2;Q9UKT9-6;Q9UKT9-9;Q13422-4;Q9UKT9-14;Q9H2S9 IKZF1;IKZF3;IKZF4;IKZF2 DNA-binding protein Ikaros;Zinc finger protein Aiolos;Zinc finger protein Eos;Zinc finger protein Helios yes no 0 0 0 0 0 5 0 1 33.191 33.191 3 0.0011522 7343 TMT1-4 111.95 64.865 37.897 89.222 47.308 52.3 33.163 60.882 36 87 51 51 36 58 1 1 1 1 1 1 4633.7 2424 1701 2407 3845 5016 5016 1 DALVDFSEQYTPEADPYFIQDR Unmodified 2618.1813 0.18127801 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3.5 0.5 2 2 78.52 78.52 3;4 7.461E-23 26327 TMT1-2 121.81 103.3 52.879 63.979 96.631 56.301 70.912 97.718 50 65 95 58 73 94 3 4 3 3 3 5 62553 2425 1797 2408 3846;3847;3848;3849 5017;5018;5019;5020;5021 5018 5 DALVNAVIDSLSAYR Unmodified 1605.8362 0.83623572 357 O95486 SEC24A Protein transport protein Sec24A yes yes 0 0 0 0 0 8 0 1 88.505 88.505 3 1.852E-05 28535 TMT1-7 90.966 71.127 0 38.233 4.2379 23.396 21.153 22.848 0 36 7 22 22 22 0 1 1 1 1 1 3648.8 2426 357 2409 3850 5022 5022 1 DANLYISGLPR Unmodified 1217.6404 0.64043645 1869 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 0 6 0 1 57.024 57.024 2 0.0002446 16961 TMT1-5 106.16 69.004 84.69 132.32 81.092 104.97 89.6 113.64 80 131 87 102 94 109 1 1 1 1 1 1 30601 2427 1869 2410 3851 5023 5023 1 DAPEGGFDAIMQATVCDEK Oxidation (M) 2068.8718 0.87177088 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 1 0 0 3.5 0.5 1 1 59.89 59.89 3;4 3.4912E-06 19178 TMT1-2 81.643 61.804 131.98 105.56 90.812 111.77 103.93 144.14 124 109 95 109 109 138 2 2 2 2 2 2 17193 2428 484 2411 3852;3853 5024;5025 5024 69 2 DAPEGGFDAIMQATVCDEK Unmodified 2052.8769 0.87685626 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 4.25 0.829 1 1 2 71.344 71.344 3;4 2.9947E-39 22703 TMT1-3 170.16 148.36 626.46 723.14 678.3 585.03 857.71 801.68 591 730 694 587 872 775 8 8 8 8 8 8 226090 2429 484 2411 3854;3855;3856;3857 5026;5027;5028;5029;5030;5031;5032;5033 5029 8 DAPITVFGCMQAR Unmodified 1464.6854 0.6853545 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 7 0 1 60.675 60.675 2 0.0088098 17743 TMT1-6 54.094 18.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2430 2263 2412 3858 5034 5034 1 DAPQDFHPDR Unmodified 1196.521 0.52104959 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.86 1.25 1 2 2 1 1 32.016 32.016 3 4.0384E-06 7838 TMT1-1 151.66 136.08 2223.8 3010.5 2587.1 2008.5 2578.4 3009.3 2101 3011 2651 2023 2652 2892 8 8 8 8 8 8 699510 2431 831 2413 3859;3860;3861;3862;3863;3864;3865 5035;5036;5037;5038;5039;5040;5041;5042;5043 5037 9 DAQALLLLYDITNK Unmodified 1589.8665 0.86647322 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 7.67 0.471 1 2 87.174 87.174 2;3 2.8201E-07 28011 TMT1-7 114.56 79.149 116.66 138.13 113.89 85.923 126.54 190.4 110 139 117 87 131 182 4 4 4 4 4 4 33554 2432 2366 2414 3866;3867;3868 5044;5045;5046;5047 5046 4 DAQELYAAGENR Unmodified 1335.6055 0.6055075 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 3 0 1 42.31 42.31 2 0.0023707 12211 TMT1-2 85.845 60.991 46.876 34.691 27.025 45.679 42.65 37.159 44 36 29 44 44 36 1 1 1 1 1 1 5390.2 2433 1234 2415 3869 5048 5048 1 DAQEQYNK Unmodified 994.43559 0.43558863 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 2.5 0.5 1 1 31.881 31.881 3 0.0047682 8020 TMT1-2 85.676 68.65 270.13 232.6 207.98 282.37 366.95 267.76 254 239 218 276 372 261 2 2 2 2 2 2 20725 2434 228 2416 3870;3871 5049;5050 5050 2 DAQGLVLFDVTGQVR Unmodified 1616.8522 0.85222014 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 6 0 1 70.936 70.936 3 0.001378 22510 TMT1-5 66.022 42.786 84.866 92.874 84.937 71.757 99.759 105.89 80 94 87 72 102 102 2 2 2 2 2 2 6992.2 2435 1796 2417 3872 5051;5052 5052 2 DAQHYGGWEHR Unmodified 1354.5803 0.58029581 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 3 0 1 28.29 28.29 4 6.9789E-05 6657 TMT1-2 103.43 86.218 137.62 188.17 154.24 154.79 114.48 205.67 130 188 160 152 123 196 2 2 2 2 2 2 15776 2436 1792 2418 3873 5053;5054 5053 2 DAQIFIQK Unmodified 961.52328 0.52328142 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6.5 0.5 1 1 53.786 53.786 2 0.0023847 15012 TMT1-6 137 36.854 480.97 860.8 668.37 469.07 778.46 766.63 456 850 687 479 790 740 2 2 2 2 2 2 82373 2437 457 2419 3874;3875 5055;5056 5056 2 DAQVVQVVLDGLSNILK Unmodified 1810.02 0.020013746 85 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 0 8.67 0.471 1 2 102.77 102.77 2;3 2.0555E-26 32149 TMT1-8 137.73 103.29 33.781 55.469 46.277 48.501 64.068 49.34 32 55 48 48 65 48 3 3 3 3 3 3 13044 2438 85 2420 3876;3877;3878 5057;5058;5059;5060 5059 4 DASDDLDDLNFFNQK Unmodified 1755.7588 0.75877326 803 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 0 4 0 1 73.467 73.467 3 4.9708E-16 23474 TMT1-3 141.46 121.89 84.932 109.25 60.016 74.772 76.586 106.55 80 109 65 73 80 102 1 1 1 1 1 1 17568 2439 803 2421 3879 5061 5061 1 DASDFVASLLPFGNK Unmodified 1579.7882 0.7882229 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 8 0 1 86.435 86.435 3 4.944E-05 27709 TMT1-7 86.944 83.165 39.126 65.84 40.785 60.051 48.475 61.511 37 65 44 58 51 59 2 2 2 2 2 2 7284.2 2440 161 2422 3880 5062;5063 5062 2 DASGVTFTWTPSSGK Unmodified 1539.7205 0.72053726 424 P01876 IGHA1 Ig alpha-1 chain C region yes yes 0 0 0 0 0 7 0 1 60.164 60.164 3 7.6806E-15 17551 TMT1-6 130.78 105.06 107.96 144.88 126.94 124.91 104.13 120.68 102 145 131 123 109 116 1 1 1 1 1 1 14876 2441 424 2423 3881 5064 5064 1 DASIVGFFDDSFSEAHSEFLK Unmodified 2347.0645 0.064457335 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5.33 0.471 2 1 81.395 81.395 3;4 1.2013E-10 26308 TMT1-4 100.21 83.909 46.372 64.589 86.383 81.756 28.478 46.091 44 65 87 80 29 44 2 2 2 2 1 2 20642 2442 955 2424 3882;3883;3884 5065;5066;5067 5065 3 DASTLQSQK Unmodified 976.48254 0.48253882 72 O00479 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes yes 0 0 0 0 0 5 0 1 35.17 35.17 3 0.0023904 8178 TMT1-4 85.731 35.124 108.27 106.89 106.77 94.532 98.199 120.85 102 109 109 94 102 116 1 1 1 1 1 1 9470.8 2443 72 2425 3885 5068 5068 1 DASVAEAWLLGQEPYLSSR Unmodified 2091.0273 0.027283968 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 5.5 0.5 1 1 79.023 79.023 3 4.8801E-10 25534 TMT1-5 100.45 91.971 77.423 87.101 78.385 57.429 68.751 114.23 73 88 80 58 72 109 2 2 2 2 2 2 29528 2444 1546 2426 3886;3887 5069;5070 5070 2 DATIASLEETNR Unmodified 1318.6365 0.63647328 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 47.924 47.924 2 1.5417E-43 14131 TMT1-1 217.78 196.09 183.63 338.1 229.38 204.13 274.98 339.67 174 333 240 204 283 326 4 4 4 4 4 4 24155 2445 251 2427 3888;3889 5071;5072;5073;5074 5072 4 DATLTALDR Unmodified 974.50327 0.50327426 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 3 0 1 45.63 45.63 2 2.0888E-09 13524 TMT1-2 177.97 90.219 211.12 366.34 274.59 265.26 252.22 372.3 200 362 286 262 265 356 1 1 1 1 1 1 55684 2446 1076 2428 3890 5075 5075 1 DATNDQVTK Unmodified 990.4618 0.46180338 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 3 0 1 32.514 32.514 2 0.0026995 8344 TMT1-2 103.26 57.92 54.144 57.245 48.833 59.285 63.718 45.086 51 58 51 58 65 44 1 1 1 1 1 1 4960 2447 307 2429 3891 5076 5076 1 DATNVAAAFEEAVR Unmodified 1462.7052 0.70522155 1238 P51151 RAB9A Ras-related protein Rab-9A yes yes 0 0 0 0 0 4 0 1 65.756 65.756 3 0.00016672 20451 TMT1-3 80.632 60.508 54.533 11.918 21.844 21.779 51.334 29.449 51 15 22 22 51 29 1 1 1 1 1 1 4773.8 2448 1238 2430 3892 5077 5077 1 DATNVGDEGGFAPNILENK Unmodified 1959.9174 0.91739917 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 3.2 1.17 1 1 3 64.386 64.386 3;4 3.0193E-39 19813 TMT1-3 170.08 142.44 1428.7 1995.6 1646.3 1388.4 1507.6 1789.4 1350 1992 1696 1386 1561 1719 8 8 8 8 8 8 799280 2449 514 2431 3893;3894;3895;3896;3897 5078;5079;5080;5081;5082;5083;5084;5085 5083 8 DATNVGDEGGFAPNILENKEGLELLK Unmodified 2742.3712 0.37120404 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 5 0 2 73.764 73.764 4;5 1.0606E-76 23314 TMT1-4 203.33 185.39 821.56 1031.1 628.7 557.25 458.2 1354.6 774 1031 665 552 507 1283 2 2 2 2 2 2 150840 2450 514 2432 3898;3899 5086;5087 5086 2 DATNVGDEGGFAPNILENSEALELVK Unmodified 2701.3083 0.30826943 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 4.5 0.5 1 1 80.823 80.823 3;4 2.8465E-11 26333 TMT1-3 84.365 72.623 77.797 48.207 48.506 76.133 40.7 53.205 73 51 51 73 44 51 2 2 2 2 2 2 24745 2451 581 2433 3900;3901 5088;5089 5088 2 DATSLLAAGEGGLLDEVEPLRPDELER Unmodified 2864.4403 0.44034624 2824 Q9P270 SLAIN2 SLAIN motif-containing protein 2 yes yes 0 0 0 0 1 3 0 1 80.058 80.058 4 0.00093184 26833 TMT1-2 45.957 31.942 7.392 12.107 9.747 6.9451 6.6434 10.47 7 12 10 7 7 10 1 1 1 1 1 1 2602.3 2452 2824 2434 3902 5090 5090 1 DAVALCELFNWLEK Unmodified 1706.8338 0.83379288 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7.67 0.471 1 2 96.475 96.475 2;3 6.0301E-05 31459 TMT1-7 98.156 72.218 66.873 80.78 53.526 17.956 73.299 65.066 63 81 55 19 73 63 3 3 3 2 3 3 12373 2453 2717 2435 3903;3904;3905 5091;5092;5093 5092 3 DAVLLLFANK Unmodified 1102.6386 0.63864553 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 9 0 1 77.394 77.394 2 3.2511E-12 22615 TMT1-8 176.79 106.52 176.01 253.03 320.31 197 308.01 270.5 167 254 319 203 312 262 2 2 2 2 2 2 56307 2454 774 2436 3906 5094;5095 5095 2 DAVLLVFANK Unmodified 1088.623 0.62299547 1519;1520 P84085;P84077;P61204;P61204-2 ARF5;ARF1;ARF3 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3 no no 0 0 0 0 0 8.5 0.5 1 1 72.125 72.125 2 2.038E-20 22291 TMT1-7 193.41 141.56 951.38 1386.8 1231.1 968.55 1437.3 1198.7 900 1383 1259 978 1456 1163 4 4 4 4 4 4 231250 2455 1520;1519 2437 3907;3908 5096;5097;5098;5099 5096 4 DAVTYTEHAK Unmodified 1133.5353 0.53530267 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 0 4.54 2.06 1 3 4 2 1 1 1 35.402 35.402 2;3;4 1.6077E-07 8184 TMT1-3 164.43 114.32 21297 35856 23948 26063 30710 41869 20149 35425 25294 25680 31879 40099 22 22 22 22 22 22 6064000 2456 1443 2438 3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921 5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122 5106 23 DAVTYTEHAKR Unmodified 1289.6364 0.6364137 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 5 0 1 30.658 30.658 4 0.025191 6389 TMT1-4 50.108 29.901 77.231 109.23 91.934 63.544 107.47 105.67 73 109 94 65 109 102 1 1 1 1 1 1 13234 2457 1443 2439 3922 5123 5123 1 DAVVYPILVEFTR Unmodified 1520.8239 0.82388012 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 6.67 0.471 1 2 80.809 80.809 2;3 4.5234E-11 25698 TMT1-6 111.52 78.578 30.636 35.388 50.884 45.36 42.114 53.164 29 36 51 45 44 51 2 2 2 2 2 2 14024 2458 3017 2440 3923;3924;3925 5124;5125;5126 5126 3 DAWEIPR Unmodified 885.43447 0.43446642 673;550;549;573 P07948-2;P07948;P08631-3;P08631-2;P08631-4;P08631;P12931;P12931-2;P07947 LYN;HCK;SRC;YES1 Tyrosine-protein kinase Lyn;Tyrosine-protein kinase HCK;Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Yes no no 0 0 0 0 0 4 0 1 49.875 49.875 2 0.0088724 14263 TMT1-3 114.72 62.084 467.03 413.33 504.92 394.59 375 613.98 440 426 508 395 396 586 1 1 1 1 1 1 119680 2459 550;573;673;549 2441 3926 5127 5127 1 DAYERDLEADIIGDTSGHFQK Unmodified 2379.0979 0.097882729 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 4 0 1 62.529 62.529 4 1.1169E-11 19208 TMT1-3 104.06 100.72 139.21 166.87 85.382 125.99 178.66 142.01 131 167 94 123 181 138 2 2 2 2 2 2 8536.4 2460 555 2442 3927 5128;5129 5129 2 DAYQVILDGVK Unmodified 1219.6449 0.64485312 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 5 0 1 66.343 66.343 2 1.7276E-07 20409 TMT1-4 113.61 102.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2461 2591 2443 3928 5130 5130 1 DCAVLSAIIDLIK Unmodified 1429.7851 0.78505177 2632 Q9H2U1-3;Q9H2U1-2;Q9H2U1 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 0 8 0 1 97.407 97.407 3 0.0045095 31804 TMT1-7 63.76 34.954 16.023 6.2537 6.8141 6.8224 22.464 6.821 15 7 7 7 22 7 1 1 1 1 1 1 1169.2 2462 2632 2444 3929 5131 5131 1 DCCFEISAPDKR Unmodified 1496.6388 0.63879824 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 1 5 0 1 45.736 45.736 3 5.7029E-09 12320 TMT1-4 142.76 115.35 194.58 384.57 333.06 217.46 399.82 341.44 185 379 339 224 403 331 1 1 1 1 1 1 31268 2463 289 2445 3930 5132 5132 1 DCCVEPGTELSPTLPHQL Unmodified 2051.9292 0.92922618 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 0 3 0 1 60.617 60.617 3 0.00019777 19433 TMT1-2 68.261 64.541 38.312 27.778 29.618 22.044 12.566 61.469 36 29 30 22 15 58 1 1 1 1 1 1 9025.5 2464 1746 2446 3931 5133 5133 1 DCEDPNPLIR Unmodified 1227.5554 0.55538619 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 2 0 1 44.796 44.796 2 0.00031429 12828 TMT1-1 123.6 92.224 99.657 123.58 97.828 103.69 104.56 136.66 94 124 102 102 109 131 2 2 2 2 2 2 17066 2465 1467;1637 2447 3932 5134;5135 5134 2 DCEECIQLEPTFIK Unmodified 1780.8012 0.80117212 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 4 0 1 65.764 65.764 3 0.00085942 20485 TMT1-3 73.022 55.944 61.529 63.937 64.26 43.188 57.129 45.274 58 65 65 44 58 44 1 1 1 1 1 1 23689 2466 986 2448 3933 5136 5136 1 DCFGCLR Unmodified 926.37386 0.37385677 285 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 0 5 0 1 42.575 42.575 2 0.016071 11047 TMT1-4 100.67 86.135 183.53 373.42 217.05 190.43 286.76 349.99 174 366 230 191 294 336 1 1 1 1 1 1 32286 2467 285 2449 3934 5137 5137 1 DCFTCSNCK Unmodified 1190.4155 0.41546359 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 5 0 1 38.086 38.086 3 0.00027605 9249 TMT1-4 119.68 93.082 238.74 369.07 318 231.3 292.81 301.85 226 367 325 234 300 291 1 1 1 1 1 1 33244 2468 1735 2450 3935 5138 5138 1 DCGATWVVLGHSER Unmodified 1585.7307 0.73072479 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 6.5 1.12 1 1 1 1 47.852 47.852 3 6.381E-11 13160 TMT1-5 127.3 121.93 707.63 1242.7 842.97 648.71 843.66 1216.7 670 1226 878 654 875 1164 6 6 6 6 6 6 296530 2469 1352 2451 3936;3937;3938;3939 5139;5140;5141;5142;5143;5144 5141 6 DCGEDGLCISDLVLDVR Unmodified 1934.8714 0.87137695 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 3 0 1 77.151 77.151 3 8.5147E-10 25874 TMT1-2 107.34 95.647 14.753 53.269 0 31.301 58.189 30.32 14 51 0 29 58 30 2 2 0 1 2 2 9332.1 2470 758 2452 3940 5145;5146 5146 2 DCGGVLVELEQA Unmodified 1288.5969 0.59691665 2442 Q96PE7 MCEE Methylmalonyl-CoA epimerase, mitochondrial yes yes 0 0 0 0 0 2 0 1 71.855 71.855 2 6.4902E-05 23285 TMT1-1 87.328 66.551 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2471 2442 2453 3941 5147 5147 1 DCGSVDGVIK Unmodified 1048.4859 0.48590964 1401 P61916-2;P61916 NPC2 Epididymal secretory protein E1 yes no 0 0 0 0 0 4 0 1 45.022 45.022 2 0.013595 12356 TMT1-3 79.16 45.082 46.376 80.789 72.014 42.454 71.549 83.238 44 80 73 44 73 80 1 1 1 1 1 1 28805 2472 1401 2454 3942 5148 5148 1 DCHHLGIQNNFDYKR Unmodified 1915.8748 0.87476327 3006 Q9Y3Z3;Q9Y3Z3-4 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 6 0 1 38.219 38.219 5 0.021869 9463 TMT1-5 40.801 24.859 355.54 570.36 535.84 400.33 726.94 531.44 337 567 545 408 730 518 1 1 1 1 1 1 16076 2473 3006 2455 3943 5149 5149 1 DCIGGCSDLVSLQQSGELLTR Unmodified 2307.0835 0.083494993 1030 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 0 0 4 0 1 67.578 67.578 3 2.1182E-18 21226 TMT1-3 125.28 108.6 54.426 34.286 20.815 14.759 21 38.843 51 36 22 15 22 37 1 1 1 1 1 1 15815 2474 1030 2456 3944 5150 5150 1 DCLHGIEAK Unmodified 1041.4913 0.49132937 2187 Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 0 4 0 1 38.538 38.538 3 7.0308E-05 9741 TMT1-3 102.06 64.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2475 2187 2457 3945 5151 5151 1 DCLINAAK Unmodified 903.4484 0.44840192 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 6 0 1 45.832 45.832 2 0.0043104 12519 TMT1-5 125.96 53.139 243.65 441.91 332.92 332.05 409.84 383.79 231 436 347 329 419 371 1 1 1 1 1 1 43391 2476 770 2458 3946 5152 5152 1 DCLNVLNK Unmodified 974.48552 0.48551571 2466 Q99471;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 0 6 0 1 52.164 52.164 2 0.038805 14986 TMT1-5 77.732 32.014 84.154 177.24 133.12 115.34 187.01 156.7 80 174 138 116 189 152 1 1 1 1 1 1 12162 2477 2466 2459 3947 5153 5153 1 DCLPELK Unmodified 873.4266 0.42660385 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 0 1 51.46 51.46 2 0.0266 14534 TMT1-4 92.47 34.911 161.13 178.73 178.53 129.65 153.87 219.47 152 181 181 131 160 210 1 1 1 1 1 1 36901 2478 68 2460 3948 5154 5154 1 DCLQFIDQLSVPEEK Unmodified 1819.8662 0.86621522 2754 Q9NUY8-2;Q9NUY8 TBC1D23 TBC1 domain family member 23 yes no 0 0 0 0 0 5 0 1 72.752 72.752 3 0.0012522 22949 TMT1-4 66.335 54.96 30.512 51.231 58.339 26.708 80.409 59.534 29 51 58 29 80 58 1 1 1 1 1 1 3985.8 2479 2754 2461 3949 5155 5155 1 DCNTCICR Unmodified 1097.4052 0.40523325 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 28.277 28.277 2 0.006311 6628 TMT1-2 106.93 98.163 54.111 73.344 40.626 51.826 79.51 52.097 51 73 44 51 80 51 1 1 1 1 1 1 12335 2480 471 2462 3950 5156 5156 1 DCPLNAEAASSK Unmodified 1261.5609 0.5608655 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 4 0 1 41.001 41.001 2 1.2169E-07 10719 TMT1-3 107.37 81.986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2481 1637 2463 3951 5157 5157 1 DCPSPCTCR Unmodified 1151.4158 0.41579794 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 0 2.5 0.5 1 1 26.209 26.209 2 0.00012351 5835 TMT1-2 149.57 133.24 23.138 52.128 34.417 28.982 35.298 29.907 22 51 36 29 36 29 1 1 1 1 1 1 6791 2482 711 2464 3952;3953 5158;5159 5159 2 DCPTPMGTK Unmodified 1005.426 0.42595192 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 5 0 1 37.967 37.967 2 0.034409 9264 TMT1-4 72.243 41.65 68.739 117.63 69.342 50.271 71.19 83.249 65 116 73 51 73 80 1 1 1 1 1 1 7053.9 2483 855 2465 3954 5160 5160 1 DCQDHSFSIVIETVQCADDRDAVCTR Unmodified 3096.3335 0.33353146 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 3.5 0.5 1 1 60.539 60.539 4 0.00092849 19461 TMT1-2 47.7 47.361 130.26 173.99 141.03 131.33 125.26 166.99 123 174 146 130 131 160 2 2 2 2 2 2 21919 2484 471 2466 3955;3956 5161;5162 5161 2 DCQDIANK Unmodified 962.41274 0.4127447 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 2.6 1.02 1 1 2 1 36.316 36.316 2;3 8.7507E-08 9662 TMT1-2 172.21 142.03 2973.7 2430.6 2553.4 2318.2 3590.8 2141.5 2797 2513 2604 2322 3605 2105 8 8 8 8 8 8 603630 2485 439 2467 3957;3958;3959;3960;3961 5163;5164;5165;5166;5167;5168;5169;5170 5166 8 DCVGDVTENQICNK Unmodified 1650.6978 0.69776968 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 2.67 0.745 3 2 1 47.335 47.335 2;3;4 2.0111E-34 13945 TMT1-1 193.28 177.94 2421.8 3272.6 3167.1 2432.6 3932.9 3295.8 2290 3279 3220 2466 3975 3197 10 10 10 10 10 10 956570 2486 554 2468 3962;3963;3964;3965;3966;3967 5171;5172;5173;5174;5175;5176;5177;5178;5179;5180 5173 10 DCVGPEVEK Unmodified 1031.4594 0.45936054 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 2.5 0.5 1 1 41.496 41.496 2 0.0016436 11686 TMT1-1 116.3 74.196 1241.8 1719.1 1377.4 1114.9 1620 1622.1 1173 1716 1420 1123 1651 1565 4 4 4 4 4 4 234580 2487 397 2469 3968;3969 5181;5182;5183;5184 5182 4 DCVQTYIR Unmodified 1053.4913 0.49132937 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 4 0 1 42.031 42.031 2 0.0016278 11127 TMT1-3 86.205 47.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2488 2223 2470 3970 5185 5185 1 DCYCTVNLDQEEVFR Unmodified 1946.8139 0.81386207 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 3 0 1 59.788 59.788 2 0.00022424 19101 TMT1-2 87.719 77.668 31.829 28.093 36.882 5.0343 22.253 15.355 30 29 36 7 22 15 1 1 1 1 1 1 5637.6 2489 1786 2471 3971 5186 5186 1 DCYPAVQK Unmodified 979.44332 0.44331654 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 4.5 0.5 1 1 40.724 40.724 2 0.0061577 10639 TMT1-3 109.01 87.506 115.08 206.96 139.46 99.545 134.86 143.26 109 204 145 101 138 138 2 2 2 2 2 2 17064 2490 1803 2472 3972;3973 5187;5188 5187 2 DCYVGDEAQSK Acetyl (N-term) 1312.5241 0.52414564 1952 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 1 0 0 0 0 1.5 0.5 1 1 43.025 43.025 2 0.00035668 12366 TMT1-1 70.389 54.498 63.421 119.21 60.134 61.145 45.252 123.43 60 117 65 60 50 117 2 2 2 2 2 2 18475 2491 1952 2473 3974;3975 5189;5190;5191 5191 3 DDAMLLK Unmodified 804.40514 0.40514012 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 53.05 53.05 2 0.026016 15435 TMT1-3 92.925 42.885 130.02 227.29 136.02 147.65 144.81 215.46 123 224 145 145 152 206 1 1 1 1 1 1 26538 2492 638 2474 3976 5192 5192 1 DDAVPNLIQLITNSVEMHAYTVQR Unmodified 2726.3698 0.36976425 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 8 0 1 91.874 91.874 4 0.0030043 29792 TMT1-7 41.087 23.939 15.899 22.099 14.143 15.295 13.683 37.986 15 22 15 15 15 36 1 1 1 1 1 1 1730.4 2493 199 2475 3977 5193 5193 1 DDDIAALVVDNGSGMCK Acetyl (Protein N-term) 1820.7921 0.792064 1357 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes yes 0 1 0 0 0 3.17 1.4 1 4 2 3 1 1 78.682 78.682 2;3 2.1475E-163 26560 TMT1-2 142.07 133.32 1832.3 2621.2 1996.1 1781.4 1938.4 2942.3 1731 2611 2070 1772 2028 2812 12 12 11 12 12 12 1649600 2494 1357 2476 3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989 5194;5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207 5201 14 DDDIAALVVDNGSGMCK Oxidation (M);Acetyl (N-term) 1836.787 0.78697862 1357 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes yes 1 0 1 0 0 2.2 0.748 1 2 2 75.546 75.546 2;3 2.1971E-35 26167 TMT1-1 67.252 62.173 285.3 344.42 268.14 236.78 217.55 414.86 269 346 278 235 232 395 3 3 3 3 3 3 154320 2495 1357 2476 3990;3991;3992;3993;3994 5208;5209;5210;5211;5212 5210 215 5 DDDYAGFVFGYQSSSR Unmodified 1812.7591 0.75910761 554;32 CON__Q28194;P07996;P07996-2;P35442 THBS1;THBS2 Thrombospondin-1;Thrombospondin-2 no no 0 0 0 0 0 4.5 0.5 1 1 66.552 66.552 3 3.7799E-09 20820 TMT1-3 114.27 94.951 130.15 189.87 146.26 162.44 197.89 203.29 123 189 153 160 203 196 3 3 3 3 3 3 30696 + 2496 32;554 2477 3995;3996 5213;5214;5215 5214 3 DDEASNLVGEEK Unmodified 1304.5732 0.57320432 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 2 0 1 46.535 46.535 2 0.00082829 13563 TMT1-1 94.402 84.031 30.857 28.449 19.545 53.793 41.727 53.175 29 29 22 51 44 51 1 1 1 1 1 1 4566 2497 2172 2478 3997 5216 5216 1 DDETMYVESK Unmodified 1215.4965 0.49653391 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 2 0 1 47.07 47.07 3 0.0033099 13699 TMT1-1 77.379 56.998 139.31 104.55 121.56 102.14 111.7 143.92 131 109 123 102 116 138 2 2 2 2 2 2 14310 2498 129 2479 3998 5217;5218 5217 2 DDEYDYLFK Unmodified 1206.5081 0.50808487 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 3.67 0.471 1 2 65.824 65.824 2;3 0.00031078 21576 TMT1-2 98.233 81.293 238.23 296.23 285.89 200.13 308.42 254.5 225 298 290 204 312 247 2 2 2 2 2 2 40862 2499 1880 2480 3999;4000;4001 5219;5220;5221 5219 3 DDGLFSGDPNWFPK Unmodified 1593.71 0.70997257 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 5 2.1 1 1 2 1 76.135 76.135 2;3 8.4328E-27 24169 TMT1-5 183.03 152.16 2720.7 3592.1 3344.2 2511.2 3030 3714.9 2571 3601 3406 2532 3129 3566 10 10 10 10 10 10 655580 2500 1052 2481 4002;4003;4004;4005;4006 5222;5223;5224;5225;5226;5227;5228;5229;5230;5231 5227 10 DDGLFSGDPNWFPKK Unmodified 1721.8049 0.80493559 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 1 6.67 0.471 1 2 66.969 66.969 2;3;4 0.00062434 20845 TMT1-5 71.879 68.49 301.47 449.48 347 339.27 271.61 561.49 285 447 361 334 293 534 3 3 3 3 3 3 116380 2501 1052 2482 4007;4008;4009 5232;5233;5234 5232 3 DDGSAVIWVTFK Unmodified 1336.6663 0.66631685 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 7 0 1 73.83 73.83 3 0.00047393 22950 TMT1-6 85.522 58.849 402.45 675.31 496.95 349.48 648.24 576.33 381 668 513 358 654 558 2 2 2 2 2 2 116320 2502 1747 2483 4010 5235;5236 5236 2 DDGSWEVIEGYR Unmodified 1424.6208 0.62082322 387 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 60.706 60.706 3 0.00073943 19394 TMT1-2 79.492 65.813 61.546 80.173 47.69 53.228 40.69 84.119 58 80 51 52 44 80 2 2 2 2 2 2 23126 2503 387 2484 4011;4012 5237;5238 5238 2 DDGTGQLLLPLSDAR Unmodified 1569.7999 0.79985021 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 65.704 65.704 2 5.321E-27 20446 TMT1-3 146.58 108.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2504 1833 2485 4013 5239 5239 1 DDGVFVQEVTQNSPAAR Unmodified 1831.8701 0.87005504 1632 Q09666;Q09666-2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 2.5 0.5 1 1 57.306 57.306 2;3 5.4445E-09 18112 TMT1-2 105.03 83.471 76.951 139.75 113.19 79.562 60.147 121.94 73 138 116 80 65 116 2 2 2 2 2 2 14234 2505 1632 2486 4014;4015 5240;5241 5241 2 DDHSFELDETALNR Unmodified 1660.7329 0.73289286 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 2 0 1 50.124 50.124 3 0.0021696 15003 TMT1-1 65.472 37.175 38.107 43.397 50.796 35.687 33.67 68.329 36 44 51 36 36 65 1 1 1 1 1 1 8626 2506 2284 2487 4016 5242 5242 1 DDIGIILINQYIAEMVR Unmodified 1975.0448 0.044848288 1911 Q16864;Q16864-2 ATP6V1F V-type proton ATPase subunit F yes no 0 0 0 0 0 7.5 0.5 1 1 101.22 101.22 3 1.5868E-24 32968 TMT1-7 121.19 96.594 0 0 15.546 15.349 6.3669 7.2803 0 0 15 15 7 7 0 0 1 1 1 1 1164.5 2507 1911 2488 4017;4018 5243;5244 5244 2 DDILNGSHPVSFDK Unmodified 1542.7314 0.7314363 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.6 1.85 1 2 2 53.961 53.961 3;4 7.9223E-08 15183 TMT1-4 113.48 91.246 916.19 1130.4 1051.7 924.24 1165.4 1073.3 865 1137 1077 923 1190 1038 6 6 6 6 6 6 156940 2508 3010 2489 4019;4020;4021;4022;4023 5245;5246;5247;5248;5249;5250 5246 6 DDKCANLFEALVGTLK Unmodified 1792.9029 0.90293508 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 1 8 0 1 80.598 80.598 3 0.00064867 25660 TMT1-7 73.464 58.043 100.2 168.44 149.03 108.32 103.03 175.08 95 167 152 109 109 167 2 2 2 2 2 2 20301 2509 2818 2490 4024 5251;5252 5252 2 DDKDTIEK Unmodified 962.45566 0.45565537 717;1466 P15153;P63000;P63000-2 RAC2;RAC1 Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 1 no no 0 0 0 0 1 2 0 1 36.888 36.888 3 0.03047 9706 TMT1-1 65.224 37.921 475.83 551.66 532.29 467.43 599.8 397.56 449 557 544 467 607 389 1 1 1 1 1 1 37094 2510 717;1466 2491 4025 5253 5253 1 DDLDLQNLIDFGQK Unmodified 1632.7995 0.79951586 2108 Q86UF1 TSPAN33 Tetraspanin-33 yes yes 0 0 0 0 0 5 0 1 81.099 81.099 3 0.00016832 26187 TMT1-4 80.507 62.591 46.694 42.818 50.827 34.798 80.843 36.069 44 44 51 36 80 36 1 1 1 1 1 1 7551 2511 2108 2492 4026 5254 5254 1 DDLENVK Unmodified 831.39741 0.39741221 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 2.5 0.5 1 1 42.85 42.85 2;3 0.017522 12135 TMT1-1 70.67 23.603 161.05 187.14 185.34 159.85 211.59 264.73 152 189 189 160 218 254 2 2 2 2 2 2 13993 2512 500 2493 4027;4028 5255;5256 5255 2 DDLIASILSEVAPTPLDELR Unmodified 2166.142 0.14197937 1562 Q01970-2;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 0 0 0 5.5 0.5 1 1 102.17 102.17 3 1.7493E-13 33300 TMT1-4 109.13 81.038 7.4532 12.174 13.062 5.2962 15.377 9.4835 7 12 13 5 15 9 1 2 3 1 2 2 2953.9 2513 1562 2494 4029;4030 5257;5258;5259 5257 3 DDLSFAGYQK Unmodified 1142.5244 0.52440364 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 5 0 1 55.36 55.36 3 0.00010299 16082 TMT1-4 114.5 69.731 115.18 159.75 162.61 177.75 145.66 150.41 109 160 167 174 152 145 1 1 1 1 1 1 26003 2514 2013 2495 4031 5260 5260 1 DDLSGADIK Unmodified 932.44509 0.44509068 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 3 0 1 46.352 46.352 2 0.0017844 13792 TMT1-2 113.22 61.224 99.616 131.02 98.45 79.703 99.394 105.9 94 131 102 80 102 102 1 1 1 1 1 1 16837 2515 1415 2496 4032 5261 5261 1 DDLVTVK Unmodified 788.42798 0.42798405 1046 P36957 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 4 0 1 47.532 47.532 2 0.0075382 13281 TMT1-3 126.67 21.551 131.28 477.6 433.36 276.65 480.03 485.19 127 464 439 285 487 468 1 1 1 1 1 1 55614 2516 1046 2497 4033 5262 5262 1 DDLWSIQNLGTK Unmodified 1388.6936 0.69359423 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 6.5 0.5 1 1 68.316 68.316 2;3 1.0217E-09 21345 TMT1-5 151.55 140.91 1165.3 1360.3 1187.5 987.37 1446.2 1523.6 1099 1371 1219 993 1476 1468 3 3 3 3 3 3 249260 2517 484 2498 4034;4035 5263;5264;5265 5263 3 DDNMFQIGK Unmodified 1066.4753 0.47534495 1294 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 0 5.5 0.5 1 1 57.137 57.137 2;3 0.0016436 16768 TMT1-4 116.3 95.403 191.73 311.17 152.8 185.48 230.64 315.35 181 307 167 182 239 302 2 2 2 2 2 2 35135 2518 1294 2499 4036;4037 5266;5267 5266 2 DDNPNLPR Unmodified 939.44101 0.44100836 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 2.33 0.471 2 1 33.13 33.13 2;3 0.0048418 8342 TMT1-1 122.18 76.841 161.84 217.57 207.36 134.43 215.14 195.33 153 218 210 138 218 189 3 3 3 3 3 3 115940 + 2519 28 2500 4038;4039;4040 5268;5269;5270 5269 3 DDPLTNLNTAFDVAEK Unmodified 1761.8421 0.84210896 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.8 1.47 1 2 2 73.603 73.603 3;4 3.7573E-20 23255 TMT1-4 160.63 145.04 1598.9 2020.9 2060.7 1431.8 1608.4 2055.2 1511 2033 2083 1450 1668 1971 9 9 9 9 9 9 363320 2520 672 2501 4041;4042;4043;4044;4045 5271;5272;5273;5274;5275;5276;5277;5278;5279 5278 9 DDPSTIEK Unmodified 903.41854 0.41854158 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 0 3 0 1 38.798 38.798 3 0.0038867 10810 TMT1-2 88.948 69.186 191.79 275.71 173.36 160.23 229.32 235.44 181 274 183 160 234 227 1 1 1 1 1 1 55074 2521 1363 2502 4046 5280 5280 1 DDPTLLSSGR Unmodified 1059.5197 0.51965261 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 3 0 1 42.772 42.772 2 0.0011684 12406 TMT1-2 76.572 37.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2522 840 2503 4047 5281 5281 1 DDPVTNLNNAFEVAEK Unmodified 1774.8374 0.83735793 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 0 4 0 2 67.759 67.759 2;3 1.4024E-06 21253 TMT1-3 102.5 89.738 77.613 86.549 46.964 59.126 78.112 83.051 73 87 51 58 80 80 2 2 2 2 2 2 35826 2523 195 2504 4048;4049 5282;5283 5282 2 DDREAQSICER Unmodified 1377.5943 0.59429089 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 1 2 0 1 27.48 27.48 3 0.0015276 6028 TMT1-1 88.24 63.172 23.415 17.28 17.512 18.164 24.791 15.283 22 18 18 18 25 15 1 1 1 1 1 1 2688.2 2524 1467;1637 2505 4050 5284 5284 1 DDREDLVYQAK Unmodified 1350.6416 0.64155866 1422 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 0 0 1 3 0 1 42.489 42.489 3 0.0021559 12304 TMT1-2 84.605 50.227 85.05 70.72 72.822 33.501 80.096 59.542 80 73 73 36 80 58 1 1 1 1 1 1 5679.9 2525 1422 2506 4051 5285 5285 1 DDRYFLSGSLDGK Unmodified 1471.6943 0.69432251 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 5 0 1 54.997 54.997 3 0.036492 15929 TMT1-4 50.519 30.941 115.35 167.78 127.28 85.527 105.14 144.11 109 167 131 87 109 138 1 1 1 1 1 1 19513 2526 1960 2507 4052 5286 5286 1 DDTIMATESEVTAFAVLDQDQK Unmodified 2426.1159 0.11590056 1318 P55263-3;P55263-4;P55263-2;P55263 ADK Adenosine kinase yes no 0 0 0 0 0 3 0 1 81.764 81.764 4 0.04344 27528 TMT1-2 27.964 19.47 7.3593 22.809 6.1684 0 0 23.452 7 22 7 0 0 22 1 1 1 0 0 1 1081.9 2527 1318 2508 4053 5287 5287 1 DDTIYEDEDVKEAIR Unmodified 1809.8269 0.82685283 715 P14927;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 0 1 2 0 1 52.931 52.931 3 0.00028139 16134 TMT1-1 78.615 58.49 54.128 49.645 57.953 34.827 56.744 67.671 51 51 58 36 58 65 1 1 1 1 1 1 27428 2528 715 2509 4054 5288 5288 1 DDTVCLAK Unmodified 920.42733 0.42733213 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 4 0 1 44.883 44.883 2 0.0062567 12250 TMT1-3 107.66 54.498 215.34 245.88 207.65 205.28 224.66 280.34 203 248 215 203 233 269 1 1 1 1 1 1 19363 2529 451 2510 4055 5289 5289 1 DDVESQFPAWISQFLAR Unmodified 2007.969 0.96904081 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 7 0 2 93.476 93.476 3 3.4379E-06 30407 TMT1-6 68.82 48.157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2530 2859 2511 4056;4057 5290;5291 5291 2 DDYPSSPPK Unmodified 1004.4451 0.44509068 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 0 3 0 1 38.53 38.53 2 0.00029182 10726 TMT1-2 95.358 61.561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2531 1480 2512 4058 5292 5292 1 DEADFRDK Unmodified 994.43559 0.43558863 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 2.5 0.5 1 1 35.521 35.521 3 0.0061642 9264 TMT1-1 90.601 45.44 1298.5 1691.1 1419.6 1096.9 1045.5 2140.5 1226 1694 1457 1099 1118 2036 2 2 2 2 2 2 192480 2532 565 2513 4059;4060 5293;5294 5293 2 DEAFPPVPQSLGYK Unmodified 1546.7668 0.76675917 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 6 0 1 63.86 63.86 3 2.7076E-07 19657 TMT1-5 105 76.641 262.25 318.42 198.33 189.95 255.73 279.46 247 319 210 189 262 269 3 3 3 3 3 3 15726 2533 536 2514 4061 5295;5296;5297 5296 3 DEDDADYKPK Unmodified 1194.5041 0.50406212 654 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 1 3 0 1 37.527 37.527 3 0.023023 10334 TMT1-2 61.56 43.751 68.398 124.24 121.11 93.819 90.662 97.617 65 123 123 94 94 94 1 1 1 1 1 1 7742.9 2534 654 2515 4062 5298 5298 1 DEDNNLLTEK Unmodified 1189.5463 0.54626129 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 2 0 1 48.831 48.831 3 0.0061087 14403 TMT1-1 69.979 35.601 46.759 50.554 33.335 52.7 56.179 60.225 44 51 36 51 58 58 1 1 1 1 1 1 12878 2535 590 2516 4063 5299 5299 1 DEFEGLFK Unmodified 983.46001 0.46001246 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4.5 0.5 1 1 65.601 65.601 2 0.00075436 20064 TMT1-4 148.38 68.203 561.21 882.7 689.34 566.88 625.54 855.2 531 876 712 567 651 819 3 3 3 3 3 3 118830 2536 845 2517 4064;4065 5300;5301;5302 5301 3 DEFTNTCPSDKEVEIAYSDVAK Unmodified 2517.1217 0.12171422 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 1 4 0 2 60.669 60.669 3;4 3.4708E-29 18467 TMT1-3 139.83 129.98 284.7 413.97 311.23 244.69 357.87 369.28 269 412 322 247 365 356 2 2 2 2 2 2 79422 2537 3048 2518 4066;4067 5303;5304 5304 2 DEIESVK Unmodified 818.40216 0.40216323 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 2.33 0.471 2 1 41.92 41.92 2;3 0.0050447 11746 TMT1-1 92.925 24.01 749.75 941.42 871.56 602.23 900.13 883.61 708 946 886 614 916 853 3 3 3 3 3 3 163210 2538 484 2519 4068;4069;4070 5305;5306;5307 5306 3 DEILEWESR Unmodified 1175.5459 0.54586736 1726 Q13596-2;Q13596;Q13596-3 SNX1 Sorting nexin-1 yes no 0 0 0 0 0 2 0 1 58.593 58.593 2 0.0073227 18287 TMT1-1 93.098 80.52 38.072 50.855 50.356 35.541 42.822 45.682 36 51 51 36 44 44 1 1 1 1 1 1 5815.9 2539 1726 2520 4071 5308 5308 1 DEILLLHQAAAK Unmodified 1320.7402 0.74015049 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-4;Q14BN4-5;Q14BN4-8 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 6 0 1 53.357 53.357 3 0.0013761 15472 TMT1-5 76.522 37.501 208.19 371.69 221 246.94 233.66 328.06 197 366 236 242 245 314 1 1 1 1 1 1 14930 2540 1806 2521 4072 5309 5309 1 DEILPTTPISEQK Unmodified 1469.7613 0.76133944 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 4 0 1 57.67 57.67 3 6.7765E-09 17251 TMT1-3 127.02 104.82 238.49 273.2 262.38 224.53 305.96 323.86 225 276 268 225 313 312 3 3 3 3 3 3 65215 2541 861 2522 4073 5310;5311;5312 5310 3 DEITFVSGAPR Unmodified 1190.5932 0.5931519 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 4 0 1 51.025 51.025 2 6.9494E-10 14664 TMT1-3 167.06 148.55 108.31 99.439 106.82 103.45 88.863 137.11 102 102 109 102 94 131 1 1 1 1 1 1 21202 2542 856 2523 4074 5313 5313 1 DELADEIANSSGK Unmodified 1347.6154 0.61540349 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3 0.816 1 1 1 54.819 54.819 3 2.6105E-08 17089 TMT1-2 119.69 89.55 345.54 488.95 481.43 420.96 558.08 517.08 327 489 491 421 569 500 4 4 4 4 4 4 81952 2543 1019 2524 4075;4076;4077 5314;5315;5316;5317 5315 4 DELANTQQK Unmodified 1045.504 0.50400254 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 3 0 1 36.038 36.038 3 0.011657 9721 TMT1-2 64.654 31.761 46.596 73.846 40.944 44.854 42.394 45.694 44 73 44 44 44 44 1 1 1 1 1 1 3103.4 2544 1613 2525 4078 5318 5318 1 DELHIVEAEAMNYEGSPIK Unmodified 2144.0096 0.0095849934 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 3.5 0.5 1 1 66.939 66.939 3;4 1.1216E-05 20914 TMT1-3 77.08 61.314 61.733 49.393 42.376 43.931 86.946 59.347 58 51 44 44 87 58 2 2 2 2 2 2 12629 2545 517 2526 4079;4080 5319;5320 5320 2 DENSVELTMAEGPYK Unmodified 1681.7505 0.75051676 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 3 0 1 58.866 58.866 3 1.5782E-08 18725 TMT1-2 115.63 90.692 37.681 96.176 77.701 65.073 71.315 59.793 36 94 80 65 73 58 1 1 1 1 1 1 14153 2546 1792 2527 4081 5321 5321 1 DEPTGEVLSLVGK Unmodified 1342.698 0.6980109 293 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 0 5 0 1 67.365 67.365 3 0.0042218 20809 TMT1-4 47.189 27.611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2547 293 2528 4082 5322 5322 1 DESGLNRK Unmodified 917.45666 0.45665842 2486;2288 Q99719;Q99719-2;O43236-6;Q8WYJ6;Q8WYJ6-2 SEPT5;SEPT1 Septin-5;Septin-1 no no 0 0 0 0 1 4 0 1 27.713 27.713 3 0.02311 5514 TMT1-3 67.897 30.17 184.87 169.94 163.45 137.32 200.37 164.84 174 174 167 138 203 160 1 1 1 1 1 1 11108 2548 2486;2288 2529 4083 5323 5323 1 DETLQDGCDTHFCK Unmodified 1724.677 0.67703424 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 42.823 42.823 3 6.4847E-05 12439 TMT1-2 88.561 77.122 54.165 42.194 58.011 43.565 56.855 52.744 51 44 58 44 58 51 1 1 1 1 1 1 7567.9 2549 471 2530 4084 5324 5324 1 DETNYGIPQR Unmodified 1191.552 0.55201537 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 2.5 0.5 1 1 39.698 39.698 2 0.00053453 10857 TMT1-1 114.39 67.559 68.517 118.09 106.28 94.822 142.4 143.04 65 117 109 95 145 138 2 2 2 2 2 2 20595 2550 1478 2531 4085;4086 5325;5326 5325 2 DETVDDFWR Unmodified 1181.4989 0.49891717 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 2.5 0.5 1 1 59.413 59.413 2 0.00070611 18647 TMT1-1 130.31 103.2 169.42 224.81 189.56 183.5 219.41 218.67 160 225 196 182 225 211 2 2 2 2 2 2 48756 2551 570 2532 4087;4088 5327;5328 5327 2 DEVTGEAALR Unmodified 1059.5197 0.51965261 2582 Q9BZE9-4;Q9BZE9-3;Q9BZE9;Q9BZE9-2 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 0 0 0 0 0 2 0 1 38.933 38.933 2 0.004235 10538 TMT1-1 64.711 3.8161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2552 2582 2533 4089 5329 5329 1 DEWLRPEDLPIK Unmodified 1509.7827 0.78274359 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 5 0 1 63.309 63.309 3 0.0035471 19171 TMT1-4 73.927 62.872 139.31 135.84 95.859 126.9 97.224 105.96 131 138 102 123 102 102 1 1 1 1 1 1 15788 2553 1186 2534 4090 5330 5330 1 DFAAVEEVAPAKPPR Unmodified 1595.8308 0.83075641 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 5 0 1 51.965 51.965 3 2.9563E-10 14795 TMT1-4 118.16 99.75 243.35 369.64 265.56 217.11 283.62 344.75 230 367 276 218 292 331 1 1 1 1 1 1 32709 2554 1960 2535 4091 5331 5331 1 DFAGIQVGK Unmodified 933.49198 0.4919813 2555 Q9BW04-2;Q9BW04 SARG Specifically androgen-regulated gene protein yes no 0 0 0 0 0 7 0 1 55.194 55.194 2 0.0045332 15577 TMT1-6 68.371 53.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2555 2555 2536 4092 5332 5332 1 DFAIFGFDEDLQQEGTLLGK Unmodified 2242.0794 0.079379118 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 88.982 88.982 3;4 2.4124E-13 29233 TMT1-4 106.16 90.734 48.795 65.211 39.431 41.639 43.793 70.172 46 65 42 41 46 67 2 2 2 2 2 2 10665 2556 2859 2537 4093;4094 5333;5334 5333 2 DFASEVSNVLNK Unmodified 1321.6514 0.65139506 2315 Q92783-2;Q92783 STAM Signal transducing adapter molecule 1 yes no 0 0 0 0 0 6 0 1 68.121 68.121 3 2.6949E-07 21294 TMT1-5 99.752 59.879 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2557 2315 2538 4095 5335 5335 1 DFAYGETDPLIR Unmodified 1395.667 0.66704513 1760 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 0 3 0 1 60.103 60.103 2 2.7703E-07 19227 TMT1-2 125.74 93.416 23.302 36.395 20.181 29.673 43.642 29.669 22 36 22 29 44 29 1 1 1 1 1 1 7751.9 2558 1760 2539 4096 5336 5336 1 DFDPVHGDVIK Unmodified 1240.6088 0.60880197 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 4 0 1 51.539 51.539 3 4.7988E-06 14834 TMT1-3 117.23 103.27 507.23 594.59 447.55 365.22 549.06 580.23 478 598 464 368 560 559 2 2 2 2 2 2 99159 2559 550 2540 4097 5337;5338 5337 2 DFEQPLAISR Unmodified 1174.5982 0.59823728 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 4 1.67 1 2 1 1 53.898 53.898 2;3 8.4013E-29 15883 TMT1-3 210.64 127.35 677.96 868.73 735.47 799.88 933.88 915.7 640 871 764 788 958 884 5 5 5 5 5 5 460760 2560 41 2541 4098;4099;4100;4101;4102 5339;5340;5341;5342;5343 5341 5 DFESHITSYK Unmodified 1225.5615 0.56151742 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 7 0 1 45.889 45.889 3 0.0040632 11910 TMT1-6 75.387 57.119 68.394 124.22 121.79 78.463 91.368 97.597 65 123 123 80 94 94 1 1 1 1 1 1 6700.8 2561 2476 2542 4103 5344 5344 1 DFFLAELEK Unmodified 1110.5597 0.55972651 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 6 0 1 73.988 73.988 2 0.011216 23614 TMT1-5 87.258 32.853 91.797 138.23 144.07 91.183 158.02 150.06 87 138 145 94 160 145 1 1 1 1 1 1 12276 2562 214 2543 4104 5345 5345 1 DFFLANASR Unmodified 1039.5087 0.50869399 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7 0 1 55.613 55.613 2 1.0162E-05 15733 TMT1-6 157.99 106.26 716.01 1190.9 1101.8 759.78 975.4 1191.7 679 1182 1119 772 1005 1144 1 1 1 1 1 1 142470 2563 536 2544 4105 5346 5346 1 DFGSFDK Unmodified 814.34973 0.34973373 465 P04179-4;P04179;P04179-2 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 5 0 1 51.761 51.761 2 0.016353 14662 TMT1-4 100.45 41.874 708.38 913.22 815.8 682.18 893.75 931.76 669 916 836 684 915 898 1 1 1 1 1 1 250330 2564 465 2545 4106 5347 5347 1 DFGSFDKFK Unmodified 1089.5131 0.51311067 465 P04179-4;P04179;P04179-2 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 1 8 0 1 57.263 57.263 3 0.036008 16430 TMT1-7 57.348 26.662 520.85 770.97 534.13 465.55 345.23 929.29 492 766 558 461 381 881 1 1 1 1 1 1 117790 2565 465 2546 4107 5348 5348 1 DFHYIVFGAPGTYNWK Unmodified 1913.9101 0.91006937 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 1 69.839 69.839 3 2.9041E-20 19602 TMT1-8 144.18 114.05 99.228 106.2 184.61 97.832 140.94 181.46 94 109 181 102 145 174 1 1 1 1 1 1 43258 2566 856 2547 4108 5349 5349 1 DFIDSVLVK Unmodified 1034.5648 0.56481189 2063 Q6ZVM7-5;Q6ZVM7;Q6ZVM7-3 TOM1L2 TOM1-like protein 2 yes no 0 0 0 0 0 6 0 1 70.585 70.585 2 0.010577 22237 TMT1-5 88.136 54.34 92.163 139.25 81.72 80.695 99.641 97.361 87 138 87 80 102 94 1 1 1 1 1 1 9320.2 2567 2063 2548 4109 5350 5350 1 DFIHTASISFLTPLR Unmodified 1716.9199 0.91990577 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 0 9 0 1 70.919 70.919 3 0.0067767 20057 TMT1-8 48.216 33.526 15.636 60.222 26.037 37.021 41.194 60.653 15 58 29 36 43 58 1 1 1 1 1 1 5988.9 2568 2723 2549 4110 5351 5351 1 DFINFISDK Unmodified 1097.5393 0.53932542 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 0 7 0 1 71.193 71.193 2 0.0078888 21840 TMT1-6 91.855 68.835 77.516 78.725 69.885 89.498 75.909 106.57 73 80 73 87 80 102 1 1 1 1 1 1 10457 2569 2638 2550 4111 5352 5352 1 DFKPGDLIFAK Unmodified 1249.6707 0.67067394 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 1 8 0 2 64.05 64.05 3;4 0.0019472 19134 TMT1-7 85.813 52.866 564.23 665.69 546.73 489.71 705.75 815.61 532 670 565 490 723 784 2 2 2 2 2 2 45499 2570 279 2551 4112;4113 5353;5354 5354 2 DFLAGGIAAAISK Unmodified 1232.6765 0.6764876 665 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 0 0 0 0 0 8.67 0.471 1 2 72.578 72.578 2;3 3.7277E-06 20621 TMT1-8 99.011 68.442 428.96 600.29 613.01 489.67 439.55 830.66 406 601 622 489 469 791 4 4 4 4 4 4 111430 2571 665 2552 4114;4115;4116 5355;5356;5357;5358 5357 4 DFLAGGVAAAISK Unmodified 1218.6608 0.66083754 488 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 0 0 8 0 1 67.777 67.777 3 6.5584E-05 20635 TMT1-7 96.734 57.468 1034.6 1256.4 1059 893.44 978.46 1350.4 976 1263 1090 892 1019 1293 3 3 3 3 3 3 141450 2572 488 2553 4117 5359;5360;5361 5360 3 DFLDEYIFLAVGR Unmodified 1556.7875 0.78749461 82 O00571-2;O00571;O15523-2;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 6 0 1 91.429 91.429 2 0.0018426 30163 TMT1-5 82.417 44.33 23.445 5.4928 22.388 21.736 51.849 14.51 22 7 22 22 51 15 1 1 1 1 1 1 1327.8 2573 82 2554 4118 5362 5362 1 DFLFQDFK Unmodified 1058.5073 0.50729701 20 B0I1T2;B0I1T2-4 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 7 0 1 71.924 71.924 2 0.0061602 22157 TMT1-6 108.98 61.91 153.71 226.98 122.85 101.08 163.98 176.54 145 225 131 102 167 170 1 1 1 1 1 1 15672 2574 20 2555 4119 5363 5363 1 DFLFQDFKR Unmodified 1214.6084 0.60840804 20 B0I1T2;B0I1T2-4 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 1 8 0 1 61.461 61.461 3 0.007189 18118 TMT1-7 76.85 50.807 160.82 265.29 157.5 193.81 179.52 269.91 152 262 169 189 189 258 1 1 1 1 1 1 18220 2575 20 2556 4120 5364 5364 1 DFLIPIGK Unmodified 901.5273 0.52730417 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 8 0 1 69.257 69.257 3 0.019301 21180 TMT1-7 63.486 29.689 92.21 108.08 100.2 72.098 91.367 106.12 87 109 102 73 94 102 1 1 1 1 1 1 7317.4 2576 645 2557 4121 5365 5365 1 DFLLKPELLR Unmodified 1242.7336 0.73360855 1738;40 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 1 8 0 1 64.345 64.345 3 0.0005546 19312 TMT1-7 102.05 55.889 678.4 1287.1 847.84 774.42 1176.2 1326.7 643 1266 890 775 1202 1276 2 2 2 2 2 2 150050 2577 40;1738 2558 4122 5366;5367 5367 2 DFLLQQTMLR Unmodified 1263.6645 0.66454271 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 0 8 0 1 66.004 66.004 2 0.0074859 19896 TMT1-7 87.913 58.826 200.77 235.19 142.13 161.91 239.01 194.65 189 236 152 160 242 189 1 1 1 1 1 1 17955 2578 1586 2559 4123 5368 5368 1 DFLPLVAK Unmodified 901.5273 0.52730417 1652 Q12882 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 8 0 1 67.376 67.376 2 0.011133 20437 TMT1-7 98.299 19.183 184.05 263.72 221.52 140.46 256.12 212.29 174 263 226 145 258 206 1 1 1 1 1 1 17635 2579 1652 2560 4124 5369 5369 1 DFLQLFAPR Unmodified 1105.592 0.59202969 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 0 9 0 1 77.22 77.22 2 0.00020727 22478 TMT1-8 141.48 94.589 145.97 156.69 221.62 165.28 215.12 215.59 138 160 221 167 220 208 1 1 1 1 1 1 45055 2580 165 2561 4125 5370 5370 1 DFLQMVLDAR Unmodified 1206.6067 0.60669348 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7.5 0.5 1 1 80.198 80.198 2 3.2215E-09 25425 TMT1-6 168.46 154.33 207.11 297.27 285.63 208.18 230.28 326.02 196 297 290 210 240 312 3 3 3 3 3 3 53713 2581 876 2562 4126;4127 5371;5372;5373 5372 3 DFLSVMLEK Unmodified 1080.5525 0.55253264 2969 Q9Y2Q3;Q9Y2Q3-3;Q9Y2Q3-2 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 8 0 1 77.397 77.397 2 0.0039223 24441 TMT1-7 100.57 80.048 131.58 151.95 118.08 141.58 117.71 159.74 124 153 124 138 124 153 2 2 2 2 2 2 15722 2582 2969 2563 4128 5374;5375 5375 2 DFLTGMCLFLQSLR Unmodified 1699.8426 0.84258343 3033 Q9Y5P6;Q9Y5P6-2 GMPPB Mannose-1-phosphate guanyltransferase beta yes no 0 0 0 0 0 9 0 1 98.912 98.912 3 0.0026221 30658 TMT1-8 57.267 38.192 7.2232 22.43 29.362 14.234 21.83 15.367 7 22 29 15 22 15 1 1 1 1 1 1 3322.4 2583 3033 2564 4129 5376 5376 1 DFLTPPLLSVR Unmodified 1256.7129 0.71287311 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 8 0 1 72.943 72.943 3 0.0071254 22611 TMT1-7 64.918 39.995 38.266 58.951 10.819 37.747 50.856 22.001 36 58 15 36 51 22 1 1 1 1 1 1 3841.8 2584 369 2565 4130 5377 5377 1 DFLYSYFK Unmodified 1081.512 0.51204804 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 8 0 1 71.452 71.452 2 0.006494 22055 TMT1-7 104.44 54.31 77.415 70.889 93.476 80.551 70.054 75.819 73 73 94 80 73 73 1 1 1 1 1 1 7090.7 2585 608 2566 4131 5378 5378 1 DFMIQGGDFTR Unmodified 1285.5761 0.57612163 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 6 0 1 59.103 59.103 2 3.7933E-11 17742 TMT1-5 133.42 96.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2586 858 2567 4132 5379 5379 1 DFNEECPR Unmodified 1065.4186 0.41855836 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 2 0.816 1 1 1 34.761 34.761 2 5.3569E-05 8921 TMT1-1 160.11 147.88 396.51 532.5 534.85 371.94 554.74 649.35 375 534 541 379 568 624 4 4 4 4 4 4 131450 2587 1700 2568 4133;4134;4135 5380;5381;5382;5383 5381 4 DFNHINVELSLLGK Unmodified 1597.8464 0.84640648 996 Q5IFJ7;P32969 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 0 7 0 1 68.8 68.8 3 0.00015388 20929 TMT1-6 81.632 78.972 161.36 179.36 140.2 114.79 193.56 179.96 152 181 145 116 196 174 1 1 1 1 1 1 24913 2588 996 2569 4136 5384 5384 1 DFNLDGAPYGYTPFCDSR Unmodified 2093.8789 0.87890517 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 5 0 1 70.293 70.293 3 1.3233E-05 21958 TMT1-4 64.207 55.388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2589 2789 2570 4137 5385 5385 1 DFNMPLTISSLK Unmodified 1364.701 0.70098779 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 8 0 1 72.848 72.848 2 5.6241E-09 22606 TMT1-7 120.87 71.059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2590 2411 2571 4138 5386 5386 1 DFNPTATVK Unmodified 991.49746 0.4974606 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6 0 1 47.899 47.899 2 0.00027558 13348 TMT1-5 142.43 92.837 282.19 254.28 326.44 288.76 291.12 334.94 266 262 329 287 302 322 1 1 1 1 1 1 36446 2591 787 2572 4139 5387 5387 1 DFNVGDYIQAVLDR Unmodified 1623.7893 0.78928553 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 6 0 2 87.89 87.89 2;3 1.2124E-09 28967 TMT1-5 121.24 87.372 68.85 86.638 77.023 89.614 47.152 60.482 65 87 80 87 51 58 2 2 2 2 2 2 34581 2592 515 2573 4140;4141 5388;5389 5388 2 DFNVPLSISR Unmodified 1146.6033 0.60332266 2718 Q9NR12;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6.5 0.5 1 1 60.516 60.516 2 1.8274E-07 17680 TMT1-6 166.69 96.329 244.51 415.33 392.03 303.94 322.47 376.69 232 412 399 305 334 362 2 2 2 2 2 2 65373 2593 2718 2574 4142;4143 5390;5391 5391 2 DFPEYTFAIADEEDYAGEVK Unmodified 2308.0059 0.0059394035 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3.75 0.433 1 3 76.151 76.151 3;4 2.0875E-38 24596 TMT1-3 137.69 122.92 92.926 156.11 119.46 109.35 141.7 144.13 88 153 124 109 145 139 4 3 4 4 4 4 33046 2594 686 2575 4144;4145;4146;4147 5392;5393;5394;5395;5396 5396 5 DFPLNDLLSATELDK Unmodified 1689.8461 0.8461317 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 84.195 84.195 3 0.015711 27589 TMT1-5 49.621 26.742 30.654 51.628 34.067 36.656 35.201 22.448 29 51 36 36 36 22 1 1 1 1 1 1 2941.6 2595 1763 2576 4148 5397 5397 1 DFPLSGYVELR Unmodified 1294.6558 0.65575216 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 5 0 1 68.209 68.209 2 0.007006 21130 TMT1-4 83 44.707 53.875 95.351 61.749 58.106 85.488 82.841 51 94 65 58 87 80 1 1 1 1 1 1 14818 2596 281 2577 4149 5398 5398 1 DFQGKPNFEEYFEILTPK Unmodified 2201.0681 0.06808615 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 1 7 0 1 77.905 77.905 4 7.4817E-05 24547 TMT1-6 76.061 52.961 84.315 132.35 144.09 123.88 104.69 105.74 80 132 146 123 109 102 2 2 2 2 2 2 6587.7 2597 1564 2578 4150 5399;5400 5400 2 DFQGTPTFTYK Unmodified 1303.6085 0.60846762 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 56.716 56.716 2;3 1.2554E-06 16184 TMT1-6 140.78 89.902 306.71 445.52 371.49 255.8 389.6 435.54 290 444 380 261 398 419 2 2 2 2 2 2 53120 2598 1878 2579 4151;4152 5401;5402 5402 2 DFSAFINLVEFCR Unmodified 1616.7657 0.76571331 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8.5 0.5 1 1 88.433 88.433 3 2.3495E-09 26782 TMT1-8 111.12 89.675 14.724 15.356 37.027 20.868 51.633 21.979 14 15 36 22 51 22 2 1 2 2 2 2 6151.3 2599 1507 2580 4153;4154 5403;5404 5404 2 DFSALESQLQDTQELLQEENR Unmodified 2492.1667 0.16669058 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.09 1.31 2 2 1 5 1 82.453 82.453 3;4 1.1626E-72 27435 TMT1-2 226.57 212.96 540.55 683.13 592.48 585.82 571.89 746.09 510 684 609 578 595 714 14 14 13 15 14 14 1058600 2600 1019 2581 4155;4156;4157;4158;4159;4160;4161;4162;4163;4164;4165 5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424 5412 20 DFSPSGIFGAFQR Unmodified 1427.6834 0.68336389 1330 P56134-3;P56134 ATP5J2 ATP synthase subunit f, mitochondrial no no 0 0 0 0 0 8.5 0.5 1 1 73.449 73.449 2;3 2.8146E-06 21006 TMT1-8 101.72 72.992 99.112 160.92 157.8 115.95 134.39 134.75 94 160 160 117 138 130 2 2 2 2 2 2 31876 2601 1330 2582 4166;4167 5425;5426 5426 2 DFSWSPGGNIIAFWVPEDKDIPAR Unmodified 2716.3286 0.32855137 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 1 8 0 1 84.057 84.057 3 1.1315E-06 26893 TMT1-7 75.184 75.008 31.943 13.302 30.17 5.5774 14.643 23.034 30 15 29 7 15 22 1 1 1 1 1 1 5893.7 2602 1328 2583 4168 5427 5427 1 DFTATDLSEFAAK Unmodified 1414.6616 0.6616254 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 67.8 67.8 3 6.3643E-09 20992 TMT1-4 127.17 98.946 176.5 280.31 214.01 141.85 264.2 249.37 167 278 220 146 267 241 1 1 1 1 1 1 36979 2603 1102 2584 4169;4170 5428;5429 5428 2 DFTEGTLFSVNQEFSLIK Unmodified 2074.0259 0.025886985 2340 Q93034 CUL5 Cullin-5 yes yes 0 0 0 0 0 7 0 1 84.831 84.831 3 1.3074E-05 27188 TMT1-6 64.275 42.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2604 2340 2585 4171 5430 5430 1 DFTPAELR Unmodified 947.47125 0.47124585 58 O00264;O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 0 0 0 0 0 4 0 1 48.219 48.219 2 4.6052E-05 13559 TMT1-3 161.12 134.43 480.52 643.32 568.04 391.05 479.6 496.93 454 644 579 397 492 479 1 1 1 1 1 1 89391 2605 58 2586 4172 5431 5431 1 DFTPGKPLK Unmodified 1001.5546 0.55458155 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 45.885 45.885 3 0.024671 11934 TMT1-7 62.823 40.586 682.49 852.92 708.71 644.2 811.69 1026.8 644 856 732 642 838 985 1 1 1 1 1 1 70289 2606 2492 2587 4173 5432 5432 1 DFTPVCTTELGR Unmodified 1394.65 0.65001485 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 4.5 0.5 1 1 53.171 53.171 2 1.3957E-10 15502 TMT1-3 164.31 111.71 659.22 902.05 791.31 523.85 672.38 949.81 623 902 806 534 697 909 3 3 3 3 3 3 259510 2607 945 2588 4174;4175 5433;5434;5435 5433 3 DFVAEPMGEKPVGSLAGIGEVLGK Unmodified 2399.2406 0.24064756 285 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 1 7 0 1 74.504 74.504 4 2.065E-23 23192 TMT1-6 124.14 105.1 99.396 161.71 109.33 134.3 125.67 150.98 94 160 116 131 131 145 1 1 1 1 1 1 18271 2608 285 2589 4176 5436 5436 1 DFVDHIDLVDPVDGVVLVDPEYLK Unmodified 2710.3742 0.37416416 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 0 4.67 0.471 1 2 88.012 88.012 3;4 2.0275E-29 28870 TMT1-4 134.87 124.07 147.6 175.44 111.86 150.61 122.13 171.34 139 176 120 146 129 164 6 6 6 6 6 6 31088 2609 1179 2590 4177;4178;4179 5437;5438;5439;5440;5441;5442 5442 6 DFVNCSTLPALNLASWR Unmodified 1962.9622 0.96218129 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 9 0 2 78.055 78.055 2;3 6.8172E-08 22805 TMT1-8 91.712 73.299 23.371 30.11 14.002 6.8165 0 30.914 22 30 15 7 0 29 1 1 1 1 0 1 4965.7 2610 489 2591 4180;4181 5443;5444 5443 2 DFVNLHSFQVR Unmodified 1360.6888 0.68878362 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 7 0 1 54.306 54.306 3 0.019877 15178 TMT1-6 53.252 27.313 115.64 137.29 104.53 103.02 118.73 151.18 109 138 109 102 123 145 1 1 1 1 1 1 6458.4 2611 722 2592 4182 5445 5445 1 DFVSEAYLLTLGK Unmodified 1454.7657 0.76569654 2399 Q96F07-2;Q96F07 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 0 7 0 2 80.603 80.603 3 3.9058E-05 26152 TMT1-6 78.705 0 60.948 109.81 123.1 69.353 106.69 120.61 58 109 123 72 109 116 2 2 2 2 2 2 11698 2612 2399 2593 4183;4184 5446;5447;5448 5448 3 DFVVGLLDLCR Unmodified 1305.6751 0.67510739 2946 Q9Y210-3;Q9Y210 TRPC6 Short transient receptor potential channel 6 yes no 0 0 0 0 0 8 0 1 80.218 80.218 2 5.9696E-06 25453 TMT1-7 95.573 65.589 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2613 2946 2594 4185 5449 5449 1 DFVWGLNK Unmodified 977.49707 0.49706667 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 8 0 1 65.15 65.15 3 0.0054177 19542 TMT1-7 83.265 46.869 84.403 154.18 110.9 110.85 89.072 121.11 80 152 116 109 94 116 1 1 1 1 1 1 10974 2614 1596 2595 4186 5450 5450 1 DFYDKIEAK Unmodified 1127.5499 0.5498901 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 1 6 0 1 52.37 52.37 3 0.037666 15076 TMT1-5 56.548 38.236 153.52 197.32 179.6 130.02 130.82 220.13 145 198 183 131 138 210 1 1 1 1 1 1 12729 2615 1744 2596 4187 5451 5451 1 DFYELEPEK Unmodified 1168.5288 0.52882031 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 3.5 0.5 1 1 58.132 58.132 2 0.0019638 17473 TMT1-3 109.29 70.272 37.609 80.865 102.81 56.509 40.283 91.593 36 80 102 58 44 87 1 1 1 1 1 1 7609 2616 648 2597 4188;4189 5452;5453 5453 2 DGADFAK Unmodified 722.32352 0.32351898 459;609 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 0 3.5 0.5 1 1 40.179 40.179 2;3 0.0020175 10279 TMT1-3 73.975 54.615 139 142.53 142.11 124.04 102.56 167.63 131 145 145 123 109 160 1 1 1 1 1 1 13837 2617 459;609 2598 4190;4191 5454;5455 5455 2 DGAGDVAFVK Unmodified 977.48181 0.48181054 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 4.5 0.5 1 1 50.08 50.08 2 0.00023712 14041 TMT1-4 127.4 81.008 330.43 471.2 331 228.73 272.22 417.57 312 469 343 232 284 399 2 2 2 2 2 2 27641 2618 451 2599 4192;4193 5456;5457 5457 2 DGDFENPVPYTGAVK Unmodified 1607.7468 0.74675201 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 4 0 1 57.994 57.994 3 0.00072444 17491 TMT1-3 71.692 47.86 346.66 415.43 355.65 307.23 378.73 409.2 327 418 366 307 389 394 2 2 2 2 2 2 104450 2619 944 2600 4194 5458;5459 5459 2 DGDGTITTK Unmodified 906.42944 0.42944062 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 0 3 0 1 35.783 35.783 2 0.0016038 9634 TMT1-2 80.231 42.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2620 621 2601 4195 5460 5460 1 DGDGVPGGGPLSPAR Unmodified 1350.6528 0.65279205 2325 Q92888;Q92888-3;Q92888-2 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 3 0 1 43.528 43.528 2 4.6923E-10 12730 TMT1-2 123.28 107.39 30.529 66.39 42.549 20.692 43.505 45.663 29 65 44 22 44 44 1 1 1 1 1 1 11742 2621 2325 2602 4196 5461 5461 1 DGDILGK Unmodified 716.37047 0.37046918 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 47.445 47.445 2 0.04473 13299 TMT1-3 84.097 30.935 789.03 1297.1 821.05 936.83 1052.7 1506.1 746 1282 873 920 1097 1441 1 1 1 1 1 1 198990 2622 1395 2603 4197 5462 5462 1 DGDKPEETQGK Unmodified 1202.5415 0.54151026 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 2.5 0.5 1 1 31.308 31.308 3 0.0076993 7769 TMT1-2 70.563 57.463 383.54 201.25 289.29 283.78 441.28 141.98 360 218 292 283 439 145 2 2 2 2 2 2 29225 2623 1792 2604 4198;4199 5463;5464 5464 2 DGDSVMVLPTIPEEEAK Unmodified 1828.8764 0.87644556 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 3.67 0.471 1 2 67.789 67.789 3;4 9.3989E-07 21296 TMT1-3 91.355 82.172 354.33 556.93 389.31 356.18 458.86 568.94 335 552 407 355 473 546 7 7 7 7 7 7 79495 2624 945 2605 4200;4201;4202 5465;5466;5467;5468;5469;5470;5471 5468 7 DGEAVWFGCDVGK Unmodified 1438.6187 0.61871473 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 5 0 2 63.257 63.257 2;3 0.00086364 19213 TMT1-4 89.403 70.658 91.791 122.03 158.72 124.31 93.914 175.34 87 123 159 124 101 167 2 2 2 2 2 2 25020 2625 1739 2606 4203;4204 5472;5473 5473 2 DGEDQTQDTELVETRPAGDGTFQK Unmodified 2636.1838 0.1837972 474;629;426 P04439;P04439-2;P10321;P10321-2;P01893 HLA-A;HLA-C;HLA-H HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H no no 0 0 0 0 1 2.5 0.5 2 2 49.634 49.634 3;4 1.1471E-72 14914 TMT1-2 208.39 194.56 284.35 462.66 327.91 266.16 383.87 405.85 269 458 341 268 392 391 5 5 5 5 5 5 117070 2626 474;629;426 2607 4205;4206;4207;4208 5474;5475;5476;5477;5478 5477 5 DGEDQTQDTELVETRPAGDR Unmodified 2230.9938 0.99381159 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 1 2 0 2 38.76 38.76 3 2.8902E-23 10451 TMT1-1 132.45 114.86 115.5 105.6 154.9 83.574 121.48 127.65 109 109 153 87 124 123 2 2 2 2 2 2 44101 2627 425 2608 4209;4210 5479;5480;5481 5479 3 DGEEAGAYDGPR Unmodified 1235.5055 0.50545911 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 2 0 1 33.713 33.713 2 5.691E-10 8429 TMT1-1 155 126.6 92.182 108.01 104.96 111.07 96.135 128.37 87 109 108 109 101 123 2 2 2 2 2 2 28247 2628 955 2609 4211 5482;5483 5482 2 DGEHVIDQGDDGDNFYVIDR Unmodified 2277.9774 0.97743324 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 2 0 1 55.182 55.182 3 1.0567E-10 16995 TMT1-1 102.98 99.384 23.38 29.056 13.351 22.852 21.178 22.848 22 29 15 22 22 22 1 1 1 1 1 1 21064 2629 974 2610 4212 5484 5484 1 DGEIVGLSGR Unmodified 1001.5142 0.5141733 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 3 0 1 45.097 45.097 2 0.00053453 13286 TMT1-2 114.39 80.222 123.4 113.72 82.755 88.311 98.229 128.32 116 116 87 87 102 123 1 1 1 1 1 1 26854 2630 934 2611 4213 5485 5485 1 DGELLFVHSAEGSEFWSALLEK Unmodified 2463.1958 0.19580586 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 7 0 1 84.969 84.969 4 0.0019765 27239 TMT1-6 46.953 38.961 38.32 27.8 28.247 28.507 80.069 67.005 36 29 29 29 80 65 1 1 1 1 1 1 4114.1 2631 761 2612 4214 5486 5486 1 DGELPVEDDIDLSDVELDDLGKDEL Unmodified 2757.2604 0.26037577 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 3.2 0.748 1 2 2 86.615 86.615 3;4 2.608E-07 28525 TMT1-3 72.532 44.027 62.558 88.853 63.836 65.718 87.729 98.767 59 88 65 65 90 95 6 6 4 6 7 7 24442 2632 1827 2613 4215;4216;4217;4218;4219 5487;5488;5489;5490;5491;5492;5493 5491 7 DGEQHEDLNEVAK Unmodified 1482.6587 0.65866529 373 O95831-3;O95831;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 2 0 1 37.246 37.246 3 1.4623E-06 9875 TMT1-1 92.939 82.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2633 373 2614 4220 5494 5494 1 DGFIDKEDLHDMLASLGK Unmodified 2002.967 0.9669919 115;879 P19105;O14950;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 1 6 2.14 1 2 3 1 74.181 74.181 3;4;5 1.5074E-10 22904 TMT1-6 113.33 91.731 3074.9 4708.5 3998.7 3301.4 3859.9 4685.8 2910 4683 4107 3305 3989 4499 11 11 11 11 11 11 730490 2634 115;879 2615 4221;4222;4223;4224;4225;4226;4227 5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505 5501 11 DGFIDKEDLHDMLASLGK Oxidation (M) 2018.9619 0.96190652 115;879 P19105;O14950;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 1 0 1 6.5 0.5 1 1 62.418 62.418 5 8.7996E-06 18999 TMT1-5 82.248 57.961 176.18 354.97 204.56 205.06 245.89 302.12 167 348 218 203 254 290 2 2 2 2 2 2 18328 2635 115;879 2615 4228;4229 5506;5507 5506 15 2 DGFIDLMELK Unmodified 1179.5846 0.58456105 2376 Q96C19;Q9BUP0-2;Q9BUP0 EFHD2;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 0 0 0 0 0 5.5 0.5 1 1 78.561 78.561 2 0.0001449 25410 TMT1-5 134.68 45.429 84.081 213.73 114.58 118.16 95.5 167.83 80 208 123 116 102 160 1 1 1 1 1 1 21227 2636 2376 2616 4230;4231 5508;5509 5509 2 DGFLTETGK Unmodified 966.46583 0.46582612 155 O43149;O43149-3 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 50.885 50.885 2 0.0031159 14355 TMT1-4 72.643 29.397 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2637 155 2617 4232 5510 5510 1 DGFPSGTPALNAK Unmodified 1273.6303 0.63026569 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 6 0 1 52.247 52.247 3 0.0026318 15054 TMT1-5 66.498 37.199 61.407 79.787 71.313 57.826 70.036 106.73 58 80 73 58 73 102 1 1 1 1 1 1 9440.2 2638 1680 2618 4233 5511 5511 1 DGFQHPAR Unmodified 926.43586 0.4358634 2142 Q8IX12-2;Q8IX12 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 0 4 0 1 23.796 23.796 3 0.042318 4083 TMT1-3 49.833 34.201 23.405 14.017 21.844 22.479 14.122 15.587 22 15 22 22 15 15 1 1 1 1 1 1 422.67 2639 2142 2619 4234 5512 5512 1 DGFVCALLR Unmodified 1049.5328 0.53280025 2270 Q8WUY1 THEM6 Protein THEM6 yes yes 0 0 0 0 0 7 0 1 64.602 64.602 2 0.0032685 19289 TMT1-6 71.877 36.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2640 2270 2620 4235 5513 5513 1 DGGAWGTEQR Unmodified 1075.4683 0.46828574 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 3 0.816 1 1 1 34.076 34.076 2 8.6667E-05 8916 TMT1-2 140.83 124.63 406.99 663.83 465.18 397.5 520.72 631.14 385 657 485 398 536 606 5 5 5 5 5 5 103080 2641 586 2621 4236;4237;4238 5514;5515;5516;5517;5518 5516 5 DGGLICTSCR Unmodified 1137.4907 0.49067744 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 4.5 0.5 1 1 38.748 38.748 2 2.7177E-05 9492 TMT1-4 150.53 121.81 446.01 833.18 615.62 577.05 666.89 825.24 423 821 641 573 690 792 3 3 3 3 3 3 198420 2642 971 2622 4239;4240 5519;5520;5521 5521 3 DGGVQACFSR Unmodified 1095.4767 0.47674194 577 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 0 4 0 1 38.25 38.25 2 0.027375 9624 TMT1-3 72.096 65.832 153.82 164.69 157.02 122.13 156.85 142.63 145 167 160 123 160 138 1 1 1 1 1 1 12460 2643 577 2623 4241 5522 5522 1 DGHDQHVLELEAK Unmodified 1489.7161 0.71612058 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 3 0 1 40.377 40.377 4 0.0054663 11435 TMT1-2 60.196 48.404 170.06 195.28 107.34 125.66 126.88 127.5 160 196 116 123 131 123 1 1 1 1 1 1 12930 2644 965 2624 4242 5523 5523 1 DGHHCCLK Unmodified 1025.4171 0.41711857 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 5 0 2 24.328 24.328 3;4 0.03159 4050 TMT1-4 54.157 35.997 53.893 80.291 71.504 53.709 55.876 67.696 51 80 73 54 58 65 2 2 2 2 2 2 9953.7 2645 1735 2625 4243;4244 5524;5525 5525 2 DGHNLISLLEVLSGDSLPR Unmodified 2034.0746 0.074568512 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 88.74 88.74 3 0.036299 28596 TMT1-6 36.041 16.717 30.882 20.962 21.736 14.689 21.809 15.368 29 22 22 15 22 15 1 1 1 1 1 1 2312.7 2646 1833 2626 4245 5526 5526 1 DGIEPGHIPGTVNIPFTDFLSQEGLEK Unmodified 2909.4447 0.44470334 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 6 0.816 1 1 1 80.267 80.267 4 1.0937E-08 25986 TMT1-5 77.241 57.519 99.433 153.31 166.2 107.69 140.23 188.94 94 153 167 110 145 181 3 4 4 4 4 4 22537 2647 883 2627 4246;4247;4248 5527;5528;5529;5530 5528 4 DGIVLGADTR Unmodified 1015.5298 0.52982336 2462 Q99436;Q99436-2 PSMB7 Proteasome subunit beta type-7 yes no 0 0 0 0 0 3.5 0.5 1 1 45.496 45.496 2 0.00026057 13556 TMT1-2 126.24 83.846 115.75 113.85 105.57 111.3 81.963 144.77 109 116 109 109 88 138 2 2 2 2 2 2 16666 2648 2462 2628 4249;4250 5531;5532;5533 5532 3 DGIVMPTNPK Unmodified 1070.543 0.54303059 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 6 0 1 49.458 49.458 2 1.9915E-05 13923 TMT1-5 151.83 132.58 100.04 92.28 59.213 113.95 88.124 144.59 94 94 65 109 94 138 1 1 1 1 1 1 13280 2649 3046 2629 4251 5534 5534 1 DGIWDVSVAK Unmodified 1088.5502 0.55022446 2966 Q9Y2I8-2;Q9Y2I8;Q9Y2I8-3 WDR37 WD repeat-containing protein 37 yes no 0 0 0 0 0 6 0 1 62.295 62.295 2 0.00059058 19015 TMT1-5 112.71 60.984 53.834 95.238 68.67 97.208 76.617 75.632 51 94 73 94 80 73 1 1 1 1 1 1 8540 2650 2966 2630 4252 5535 5535 1 DGKYDLDFK Unmodified 1099.5186 0.51858998 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 1 5 0 1 51.296 51.296 3 0.042231 14503 TMT1-4 54.343 26.482 366.36 332.26 541.79 343.38 249.67 524.81 346 344 535 348 271 499 1 1 1 1 1 1 24323 2651 581 2631 4253 5536 5536 1 DGLAFNALIHR Unmodified 1225.6568 0.65675521 195 O43707 ACTN4 Alpha-actinin-4 no no 0 0 0 0 0 7.5 0.5 1 1 54.746 54.746 3 4.3603E-13 15384 TMT1-6 178.46 114.2 290.86 441.89 334.68 287.32 341.64 449.7 275 439 347 287 354 431 3 3 3 3 3 3 110070 2652 195 2632 4254;4255 5537;5538;5539 5538 3 DGLALGPGPFVTALEYATDTK Unmodified 2135.0787 0.078650837 2614 Q9H0R4;Q9H0R4-2 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 0 0 0 0 0 6 0 1 90.727 90.727 3 3.2143E-10 29874 TMT1-5 93.215 69.886 46.34 80.688 78.191 73.953 62.515 90.958 44 80 80 73 66 87 3 3 3 3 3 3 4479.8 2653 2614 2633 4256 5540;5541;5542 5541 3 DGLEDPLEDTGLVQQQLDQLSTIGR Unmodified 2739.3563 0.35628226 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 4 0 1 87.616 87.616 3 2.0121E-07 28942 TMT1-3 69.981 61.48 7.3712 0 23.494 6.1286 6.4977 15.805 7 0 22 7 7 15 1 0 1 1 1 1 2565.9 2654 2876 2634 4257 5543 5543 1 DGLEMEK Unmodified 820.36367 0.36366924 687 P13693;P13693-2 TPT1 Translationally-controlled tumor protein yes no 0 0 0 0 0 3 0 1 44.583 44.583 2 0.018828 13084 TMT1-2 98.523 55.497 153.7 212.91 137.11 139.76 154.47 188.54 145 212 145 138 160 181 1 1 1 1 1 1 21834 2655 687 2635 4258 5544 5544 1 DGLGFCALIHR Unmodified 1257.6288 0.6288259 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 7.75 0.829 2 1 1 55.263 55.263 3 1.2601E-07 15588 TMT1-6 147.3 117.77 962.12 1217.5 1192.6 942.75 1129.2 1401.5 909 1224 1213 947 1167 1345 4 4 4 4 4 4 367520 2656 672 2636 4259;4260;4261;4262 5545;5546;5547;5548;5549;5550 5546 6 DGLGGLPDIVR Unmodified 1110.6033 0.60332266 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 5 0 1 61.062 61.062 2 0.00011878 18315 TMT1-4 112.36 90.271 130.41 150.67 135.51 92.25 128.41 127.45 123 152 138 94 131 123 1 1 1 1 1 1 18516 2657 1122 2637 4263 5551 5551 1 DGLILTSR Unmodified 873.49198 0.4919813 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 5 0 1 46.816 46.816 2 1.4326E-08 12781 TMT1-4 178.65 120.4 764.62 1020.9 830.37 738.02 900.48 965.68 722 1021 858 736 925 930 1 1 1 1 1 1 182960 2658 2468 2638 4264 5552 5552 1 DGLLENQTPEFFQDVCKPK Unmodified 2264.0783 0.078333261 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 1 6 0 1 65.331 65.331 4 0.00061101 20182 TMT1-5 58.49 42.724 92.091 115.31 113.97 93.388 136.2 112.31 87 116 116 94 138 109 1 1 1 1 1 1 7955 2659 1176 2639 4265 5553 5553 1 DGLLPENTFIVGYAR Unmodified 1663.857 0.85697116 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 5.5 0.5 1 1 71.214 71.214 2 8.2711E-17 22450 TMT1-5 149.83 114.94 68.927 79.298 70.223 82.106 61.093 90.999 65 80 73 80 65 87 2 2 2 2 2 2 34301 2660 655 2640 4266;4267 5554;5555 5555 2 DGLNEAWADLLELIDTR Unmodified 1942.9636 0.96362108 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 102.88 102.88 3 2.641E-07 33881 TMT1-5 92.679 87.47 9.5418 9.8119 11.046 4.9152 11.972 10.318 9 10 11 5 12 10 2 2 2 1 2 2 1828.9 2661 1546 2641 4268 5556;5557 5557 2 DGLQNEK Unmodified 802.3821 0.38209649 1032 P35914;P35914-3;P35914-2;Q8TB92-5;Q8TB92-2;Q8TB92 HMGCL;HMGCLL1 Hydroxymethylglutaryl-CoA lyase, mitochondrial;3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic yes no 0 0 0 0 0 3 0 1 33.703 33.703 2 0.022184 8809 TMT1-2 95.909 51.156 154.28 118.47 119.63 125.05 119.85 89.322 145 123 123 123 123 87 1 1 1 1 1 1 10339 2662 1032 2642 4269 5558 5558 1 DGLSEAAAQSR Unmodified 1103.5207 0.52071524 1667 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 0 2 0 1 34.197 34.197 2 6.6983E-05 8663 TMT1-1 91.549 66.627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2663 1667 2643 4270 5559 5559 1 DGLTDVYNK Unmodified 1023.4873 0.48728985 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 4 0 1 49.164 49.164 2 0.0017104 13914 TMT1-3 114.84 69.76 115.5 136.89 128.81 92.956 112.12 143.91 109 138 131 94 116 138 1 1 1 1 1 1 18437 2664 878 2644 4271 5560 5560 1 DGLTISFTK Unmodified 980.51786 0.51786169 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 7 0 1 60.155 60.155 2 0.0029879 17533 TMT1-6 102.62 83.527 53.666 110.96 83.61 80.715 92.584 59.186 51 109 87 80 94 58 1 1 1 1 1 1 7704.6 2665 2338 2645 4272 5561 5561 1 DGMAFNALIHK Unmodified 1215.607 0.60702783 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7.5 0.5 1 1 56.602 56.602 3 2.9308E-05 16297 TMT1-7 87.363 73.593 77.298 124.53 67.814 74.316 76.094 121.48 73 123 73 73 80 116 1 1 1 1 1 1 11895 2666 1546 2646 4273;4274 5562;5563 5563 2 DGNASGTTLLEALDCILPPTRPTDK Unmodified 2654.3221 0.32214536 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 6 0 1 79.493 79.493 4 1.1746E-08 25749 TMT1-5 78.758 71.806 15.712 52.878 19.563 22.21 35.609 29.898 15 51 22 22 36 29 1 1 1 1 1 1 4697.5 2667 1490 2647 4275 5564 5564 1 DGNLHEGDIILK Unmodified 1322.683 0.68302954 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 4 0 1 48.892 48.892 3 8.5257E-08 13823 TMT1-3 123.02 74.579 249 374.56 393.74 174.13 244.91 341.59 236 374 393 185 253 327 1 1 1 1 1 1 45761 2668 2852 2648 4276 5565 5565 1 DGPALSGPQSR Unmodified 1083.5309 0.530886 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 3 0 1 32.987 32.987 2 2.7599E-33 8527 TMT1-2 217.45 163.7 108.11 152.84 95.353 118.88 118.26 143.73 102 152 102 116 123 138 1 1 1 1 1 1 23077 2669 800 2649 4277 5566 5566 1 DGPEIGLR Unmodified 855.44503 0.4450311 869 P23743 DGKA Diacylglycerol kinase alpha yes yes 0 0 0 0 0 3 0 1 41.643 41.643 2 0.036704 11935 TMT1-2 78.324 34.509 61.276 79.421 93.77 64.287 62.169 83.506 58 80 94 65 65 80 1 1 1 1 1 1 9530.4 2670 869 2650 4278 5567 5567 1 DGPGETDAFGNSEGK Unmodified 1479.6114 0.61138074 334 O94925;O94925-3;O94925-2 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 2 0 1 44.079 44.079 3 0.00066499 12565 TMT1-1 72.417 62.617 37.921 65.545 63.281 65.667 85.397 75.381 36 65 65 65 87 73 1 1 1 1 1 1 9750.3 2671 334 2651 4279 5568 5568 1 DGPGNPLR Unmodified 824.41407 0.41406533 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 3 0 1 33.344 33.344 2 0.0086042 8671 TMT1-2 68.214 50.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2672 2339 2652 4280 5569 5569 1 DGPSAGCTIVTALLSLAMGR Unmodified 1989.0023 0.002331546 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 9 0 1 102.57 102.57 3 0.00033641 32073 TMT1-8 56.9 41.467 0 0 0 0 0 7 0 0 0 0 0 7 0 0 0 0 0 1 1149.2 2673 1042 2653 4281 5570 5570 1 DGQAMLWDLNEGK Unmodified 1475.6715 0.67147858 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 5 0 1 65.219 65.219 2 6.9797E-14 19968 TMT1-4 131.69 122.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2674 1478 2654 4282 5571 5571 1 DGQAVLENVSEGGK Unmodified 1401.6736 0.67358707 1246 P51606 RENBP N-acylglucosamine 2-epimerase yes yes 0 0 0 0 0 3 0 1 50.375 50.375 3 6.2687E-05 15393 TMT1-2 88.73 69.335 46.014 111.08 107.15 87.275 76.011 106.56 44 109 109 87 80 102 1 1 1 1 1 1 14539 2675 1246 2655 4283 5572 5572 1 DGQVINETSQHHDDLE Unmodified 1835.7922 0.79219865 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2 0.707 1 2 1 37.181 37.181 3 1.0476E-11 9901 TMT1-1 123 103.45 138.75 200.11 135.78 164.39 185.73 158.86 131 199 144 161 190 154 3 3 3 3 3 3 136470 2676 575 2656 4284;4285;4286;4287 5573;5574;5575;5576;5577 5575 5 DGQYLLTGGDR Unmodified 1193.5677 0.56766543 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 3 0 1 46.287 46.287 2 0.0063544 13870 TMT1-2 84.309 52.375 77.21 124.28 82.683 80.924 84.439 82.871 73 123 87 80 87 80 1 1 1 1 1 1 28855 2677 1229 2657 4288 5578 5578 1 DGSCGVAYVVQEPGDYEVSVK Unmodified 2257.0209 0.020877961 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.8 1.47 1 2 2 62.232 62.232 3;4;5 1.7719E-14 19012 TMT1-3 114.88 99.293 751.22 763.1 776.26 601.16 735.92 914.95 708 777 788 605 760 878 6 6 6 6 6 6 534530 2678 831 2658 4289;4290;4291;4292;4293 5579;5580;5581;5582;5583;5584 5580 6 DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK Unmodified 3578.63 0.63001428 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.5 0.5 1 1 70.459 70.459 4;5 3.8735E-14 21641 TMT1-6 80.79 79.18 161.82 201.32 224.89 127.16 139.3 190.04 153 203 225 131 145 182 3 3 3 3 3 3 68821 2679 831 2659 4294;4295 5585;5586;5587 5587 3 DGSDYEGWCWPGSAGYPDFTNPTMR Unmodified 2865.1435 0.14352907 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 5 0 1 77.006 77.006 3 0.039141 24621 TMT1-4 29.668 27.663 0 0 38.335 13.847 14.006 30.514 0 0 36 15 15 29 0 0 1 1 1 1 5076.3 2680 1792 2660 4296 5588 5588 1 DGSSGGVIYLVTITAAGVDHR Unmodified 2087.0647 0.064732107 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 7 0 1 71.913 71.913 3 5.6494E-14 22205 TMT1-6 110.33 82.114 139.39 136.07 81.703 80.017 135.75 143.23 131 138 87 80 138 138 2 2 2 2 2 2 24267 2681 923 2661 4297 5589;5590 5590 2 DGSVAIASKPR Unmodified 1099.5986 0.59857163 1326 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 1 6 0 1 35.607 35.607 3 0.00051696 8456 TMT1-5 97.911 61.578 342.21 477.88 329.49 398.1 337.25 490.33 323 476 349 388 356 469 1 1 1 1 1 1 24707 2682 1326 2662 4298 5591 5591 1 DGSWFIQSLCAMLK Unmodified 1654.7847 0.7847342 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 0 9 0 1 93.326 93.326 3 8.6986E-05 28602 TMT1-8 73.91 37.063 77.51 78.708 70.907 66.577 70.99 67.264 73 80 73 66 73 65 2 2 2 2 2 2 7272.3 2683 1099 2663 4299 5592;5593 5592 2 DGSYAWEIK Unmodified 1067.4924 0.49237523 1791 Q14696 MESDC2 LDLR chaperone MESD yes yes 0 0 0 0 0 5 0 1 56.237 56.237 2 0.0065255 16481 TMT1-4 94.85 86.63 54.163 42.188 58.376 35.363 26.869 53.599 51 44 58 36 29 51 1 1 1 1 1 1 5722.3 2684 1791 2664 4300 5594 5594 1 DGSYAWEIKDFLVGQDR Unmodified 1997.9483 0.94830537 1791 Q14696 MESDC2 LDLR chaperone MESD yes yes 0 0 0 0 1 6.5 0.5 1 1 76.401 76.401 3 4.8321E-07 23953 TMT1-6 92.427 75.349 169.86 178.55 154.28 163.24 129.8 205.23 160 181 160 160 138 196 2 2 2 2 2 2 22585 2685 1791 2665 4301;4302 5595;5596 5596 2 DGTDYIEIIPK Unmodified 1262.6394 0.63943339 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 4 0 1 65.05 65.05 2 0.013101 20223 TMT1-3 76.465 69.337 15.649 36.512 44.08 28.253 43.451 37.136 15 36 44 29 44 36 1 1 1 1 1 1 4545.9 2686 666 2666 4303 5597 5597 1 DGTGVVEFVR Unmodified 1077.5455 0.54547343 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 4 0 1 50.702 50.702 2 0.00031617 14505 TMT1-3 123.5 90.505 335.45 763.8 502.05 414.99 519.68 668.48 319 747 525 416 537 641 2 2 2 2 2 2 87069 2687 1615 2667 4304 5598;5599 5598 2 DGTHVVENVDATHIGK Unmodified 1690.8275 0.82746195 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 3.5 1.5 1 2 1 41.814 41.814 3;4 5.1364E-20 10690 TMT1-3 158.17 121.16 552.25 639.05 597.68 427.72 586.03 607.95 521 645 608 434 599 586 4 4 4 4 4 4 107880 2688 393 2668 4305;4306;4307;4308 5600;5601;5602;5603 5601 4 DGTIDFTPGSELLITK Unmodified 1705.8774 0.87743183 43 O00159-2;O00159-3;O00159 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 0 5 0 1 73.243 73.243 3 1.6459E-05 23152 TMT1-4 86.641 66.803 38.249 43.794 26.514 45.873 33.971 45.935 36 44 29 44 36 44 1 1 1 1 1 1 4373.1 2689 43 2669 4309 5604 5604 1 DGTIIHLK Unmodified 895.51272 0.51271674 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6 0 1 45.259 45.259 3 0.018275 12239 TMT1-5 64.265 45.534 570.27 844.59 641.36 528.47 785.77 687.53 539 840 664 532 797 666 2 2 2 2 2 2 68744 2690 936 2670 4310 5605;5606 5605 2 DGTILCTLMNK Unmodified 1264.6155 0.6155436 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 0 8 0 2 69.482 69.482 2;3 1.337E-05 21227 TMT1-7 123.6 95.854 386.63 529.12 395.08 381.76 475.5 537.55 365 528 412 379 489 517 3 3 3 3 3 3 99550 2691 2463 2671 4311;4312 5607;5608;5609 5607 3 DGTISEDTIR Unmodified 1105.5251 0.52513192 2494 Q99816;Q99816-2 TSG101 Tumor susceptibility gene 101 protein yes no 0 0 0 0 0 2 0 1 39.263 39.263 2 7.5803E-05 10670 TMT1-1 105.1 75.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2692 2494 2672 4313 5610 5610 1 DGTVLCELINALYPEGQAPVK Unmodified 2286.1566 0.15658358 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 7.33 1.05 1 4 3 1 93.569 93.569 3;4 6.9445E-14 30296 TMT1-7 106.58 92.85 998.38 1342.3 1347.4 992.19 1280.4 1451.6 944 1346 1364 1002 1315 1395 15 17 16 16 15 13 352980 2693 1052 2673 4314;4315;4316;4317;4318;4319;4320;4321;4322 5611;5612;5613;5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627 5621 17 DGTVLCELINALYPEGQAPVKK Unmodified 2414.2515 0.2515466 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 1 7.4 2.24 1 2 4 3 85.154 85.154 3;4;5 1.7578E-17 26937 TMT1-7 107.33 78.444 3146.7 3762 3554.9 2750.8 3450.5 4611.1 2970 3791 3622 2770 3571 4418 15 15 15 15 15 15 766590 2694 1052 2674 4323;4324;4325;4326;4327;4328;4329;4330;4331;4332 5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642 5633 15 DGTVTAGNASGVADGAGAVIIASEDAVK Unmodified 2515.2402 0.24018987 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 4 0 1 70.054 70.054 4 2.4602E-08 22101 TMT1-3 71.882 51.068 46.874 34.685 27.435 36.495 64.766 45.056 44 36 29 36 65 44 1 1 1 1 1 1 17044 2695 1102 2675 4333 5643 5643 1 DGTVTTDWK Unmodified 1021.4716 0.47163978 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 47.798 47.798 2 0.00042677 13134 TMT1-4 138.1 82.567 357.73 490.48 595.02 417.88 478.09 687.79 339 493 596 423 498 658 1 1 1 1 1 1 47078 2696 471 2676 4334 5644 5644 1 DGTVTVR Unmodified 746.39227 0.39226725 831;270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7;P21333-2;P21333 FLNB;FLNA Filamin-B;Filamin-A no no 0 0 0 0 0 2.5 0.5 1 1 28.012 28.012 2 8.5057E-05 6358 TMT1-1 122.54 57.995 390.22 429.75 596.65 435.23 538.36 524.03 369 438 595 440 551 506 1 1 1 1 1 1 51979 2697 270;831 2677 4335;4336 5645;5646 5645 2 DGVGMVEYLR Unmodified 1137.5488 0.54884425 1686 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 0 4 0 1 56.18 56.18 2 0.0061089 16711 TMT1-3 60.717 33.715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2698 1686 2678 4337 5647 5647 1 DGVIEASINHEK Unmodified 1310.6466 0.64664404 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 4 0 1 43.134 43.134 3 0.00014596 11559 TMT1-3 95.428 61.562 138.21 239.64 191.68 119.4 191.96 220.51 131 237 196 123 196 212 1 1 1 1 1 1 16640 2699 162 2679 4338 5648 5648 1 DGVLALDNFHR Unmodified 1255.6309 0.63093439 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5 0 1 50.965 50.965 3 0.0026029 14336 TMT1-4 76.255 52.936 68.529 85.745 131.75 101.12 133.46 181.68 65 87 131 102 138 174 1 1 1 1 1 1 45324 2700 2066 2680 4339 5649 5649 1 DGVLLCQLLNNLLPHAINLR Unmodified 2285.2678 0.26780579 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 9 0 1 93.676 93.676 3 0.047554 28794 TMT1-8 29.126 9.8025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2701 722 2681 4340 5650 5650 1 DGVLVDEFGLPQIPAS Unmodified 1655.8407 0.8406524 2806 Q9NZZ3 CHMP5 Charged multivesicular body protein 5 yes yes 0 0 0 0 0 4 0 1 88.298 88.298 3 0.0019174 29111 TMT1-3 62.377 46.437 15.981 14.772 13.474 15.866 12.61 38.016 15 15 14 15 14 36 1 1 2 1 2 2 3052.2 2702 2806 2682 4341 5651;5652 5651 2 DGVPIGYK Unmodified 847.44397 0.44396847 174 O43447-2;O43447 PPIH Peptidyl-prolyl cis-trans isomerase H yes no 0 0 0 0 0 5 0 1 47.133 47.133 2 0.0010427 12873 TMT1-4 100.45 41.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2703 174 2683 4342 5653 5653 1 DGVSAAVISAELASFLATK Unmodified 1848.9833 0.98329389 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 8 0 1 94.252 94.252 3 0.0059857 30591 TMT1-7 48.112 30.195 0 23.044 21.761 14.82 14.767 7.0406 0 22 22 15 15 7 0 1 1 1 1 1 3858.8 2704 2407 2684 4343 5654 5654 1 DGVSLGAVSSTEEASR Unmodified 1563.7376 0.73764389 21 B2RUZ4 SMIM1 Small integral membrane protein 1 yes yes 0 0 0 0 0 2 0 1 46.341 46.341 2 8.0483E-06 13510 TMT1-1 93.011 59.144 23.359 13.887 29.794 14.203 22.125 6.8307 22 15 29 15 22 7 1 1 1 1 1 1 4255.2 2705 21 2685 4344 5655 5655 1 DGVTVAK Unmodified 688.37555 0.37555455 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 37.111 37.111 2 0.0088578 8864 TMT1-4 114.78 39.472 639.5 802.76 763.61 698.66 822.22 738.73 604 807 782 695 841 715 2 2 2 2 2 2 109480 2706 638 2686 4345;4346 5656;5657 5657 2 DGVVEITGK Unmodified 916.48656 0.48656157 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 4 0 2 48.495 48.495 2;3 0.0020367 13624 TMT1-3 107.69 33.521 610.64 672.11 675.85 564.9 599.13 773.88 576 681 688 564 623 742 3 3 3 3 3 3 112520 2707 476 2687 4347;4348 5658;5659;5660 5658 3 DGVVEITGKHEER Unmodified 1467.7318 0.73177065 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 1 4 0 1 35.576 35.576 4 0.012603 8541 TMT1-3 54.871 37.085 108.32 107.01 99.19 94.447 126.7 174.41 102 109 102 94 131 167 1 1 1 1 1 1 14404 2708 476 2688 4349 5661 5661 1 DGVVLFK Unmodified 776.44324 0.44324019 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 6 0 1 56.878 56.878 2 0.016847 17001 TMT1-5 100.07 45.541 84.512 139.38 105.02 92.783 196.7 118.04 80 138 109 94 196 116 1 1 1 1 1 1 19668 2709 530 2689 4350 5662 5662 1 DGVWKPTLVILR Unmodified 1395.8238 0.82382054 2314 Q92747;Q92747-2 ARPC1A Actin-related protein 2/3 complex subunit 1A yes no 0 0 0 0 1 9 0 1 64.041 64.041 3 0.014782 17334 TMT1-8 53.388 20.782 92.385 101.02 76.778 73.072 113.84 120.41 87 102 80 73 116 116 1 1 1 1 1 1 9309 2710 2314 2690 4351 5663 5663 1 DGVWNLQNEVTK Unmodified 1401.6888 0.6888432 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 6 0 1 59.539 59.539 3 0.025368 17940 TMT1-5 50.088 37.527 61.293 94.579 78.032 57.124 86.083 66.834 58 94 80 58 87 65 1 1 1 1 1 1 5927.8 2711 2028 2691 4352 5664 5664 1 DGVYVLDLAAK Unmodified 1162.6234 0.6233894 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 5.5 0.5 1 1 67.105 67.105 2 2.4235E-05 20694 TMT1-4 117.52 71.84 46.308 95.71 70.766 50.369 61.49 121.9 44 94 73 51 65 116 1 1 1 1 1 1 9975 2712 1283 2692 4353;4354 5665;5666 5665 2 DGWQDIVIGAPQYFDR Unmodified 1878.8901 0.89006221 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 76.767 76.767 3 0.0065754 24697 TMT1-5 52.784 40.442 53.906 49.029 95.694 62.867 131.59 74.063 51 51 94 65 131 73 1 1 1 1 1 1 9977.2 2713 856 2693 4355 5667 5667 1 DGWQVEEADDWLR Unmodified 1617.7059 0.70594983 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 3 0 1 68.934 68.934 2 4.1537E-11 22668 TMT1-2 149.41 131.97 23.127 44.541 42.813 45.028 27.231 30.137 22 44 44 44 29 29 1 1 1 1 1 1 7227.7 2714 515 2694 4356 5668 5668 1 DGYADIVDVLNSPLEGPDQK Unmodified 2144.0273 0.027343548 1195 P49753;Q86TX2;P49753-2 ACOT2;ACOT1 Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 1 yes no 0 0 0 0 0 4 0 1 79.218 79.218 3 5.4628E-14 25733 TMT1-3 92.492 89.806 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2715 1195 2695 4357 5669 5669 1 DGYAQILR Unmodified 934.48723 0.48723027 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 4 0 1 46.59 46.59 2 0.022402 12887 TMT1-3 87.251 34.952 160.8 224.21 196.5 175.22 173 302.07 152 224 202 174 183 288 1 1 1 1 1 1 46194 2716 2492 2696 4358 5670 5670 1 DGYDYDGYR Unmodified 1122.4254 0.42541787 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 2 0 1 40.597 40.597 2 0.016167 11135 TMT1-1 80.455 74.534 46.687 65.464 32.785 44.977 61.738 121.89 44 65 36 44 65 116 1 1 1 1 1 1 17347 2717 1615 2697 4359 5671 5671 1 DGYNDIAVAAPYGGPSGR Unmodified 1778.8224 0.82237657 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 3.25 0.433 3 1 54.176 54.176 2;3 1.069E-07 16463 TMT1-2 92.474 75.944 253.95 317.83 330.5 285.09 302.87 363.39 240 320 336 283 314 349 6 6 6 5 6 6 129640 2718 565 2698 4360;4361;4362;4363 5672;5673;5674;5675;5676;5677 5672 6 DGYNYTLSK Unmodified 1059.4873 0.48728985 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 0 6 0 1 47.064 47.064 2 0.00035673 12987 TMT1-5 140.05 112.95 115.28 184.86 124.52 124.68 124.5 197.92 109 183 131 123 131 189 1 1 1 1 1 1 16349 2719 987 2699 4364 5678 5678 1 DGYVPPK Unmodified 774.3912 0.39120462 971 P31146 CORO1A Coronin-1A no no 0 0 0 0 0 5 0 2 39.225 39.225 2;3 0.0099031 9988 TMT1-4 110.35 50.197 1788.5 2335.8 1486.2 1616.6 1620.3 3165.6 1686 2332 1578 1588 1724 3013 4 4 4 4 4 4 105520 2720 971 2700 4365;4366 5679;5680;5681;5682 5681 4 DHADSNIVIMLVGNK Unmodified 1624.8243 0.82429083 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 7.25 0.829 1 1 2 65.378 65.378 3 1.382E-05 19706 TMT1-7 71.279 61.864 184.32 247.2 190.3 134.94 241.76 272.39 174 247 196 138 246 262 2 2 2 2 2 2 30796 2721 1880 2701 4367;4368;4369;4370 5683;5684;5685;5686 5686 4 DHALLEEQSK Unmodified 1168.5724 0.57241646 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 2.5 0.5 1 1 37.041 37.041 3 0.00028076 10035 TMT1-2 102.52 77.669 153.51 203.77 175.66 161.14 174.11 227.42 145 204 181 160 181 218 3 3 3 3 3 3 21094 2722 195 2702 4371;4372 5687;5688;5689 5688 3 DHASIQMNVAEVDK Unmodified 1555.7301 0.73005609 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 0 4 0 1 46.067 46.067 3 1.3048E-05 12715 TMT1-3 97.417 85.649 68.875 102.9 59.094 105.84 112.85 105.51 65 102 65 102 116 102 1 1 1 1 1 1 10956 2723 1476 2703 4373 5690 5690 1 DHASNIYK Unmodified 946.45084 0.45084476 1157 P48509 CD151 CD151 antigen yes yes 0 0 0 0 0 6 1 1 1 30.529 30.529 3 0.0043286 6192 TMT1-4 87.308 51.428 81.672 93.162 80.576 96.769 120.34 112.76 77 94 84 95 123 109 2 2 2 2 2 2 19281 2724 1157 2704 4374;4375 5691;5692 5691 2 DHAVVVGVYRPPPK Unmodified 1532.8463 0.8463469 841 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 1 7 0 1 39.889 39.889 4 6.5388E-06 9497 TMT1-6 101.53 85.279 614.4 810.66 647.17 438.77 655.14 804.26 580 811 664 448 672 772 2 2 2 2 2 2 18046 2725 841 2705 4376 5693;5694 5693 2 DHEDYDPQTVR Unmodified 1373.5848 0.58477206 2338 Q93008-1;Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 0 2 0 1 30.222 30.222 3 0.0030927 7070 TMT1-1 74.611 51.291 0 23.177 13.823 22.824 21.179 22.848 0 22 15 22 22 22 0 1 1 1 1 1 2695.2 2726 2338 2706 4377 5695 5695 1 DHENIVIAK Unmodified 1037.5506 0.55055881 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 4 0 1 39.301 39.301 3 0.0092226 10028 TMT1-3 66.962 51.423 153.67 167.51 179.98 112.98 163.8 165.89 145 170 181 116 167 160 1 1 1 1 1 1 15144 2727 530 2707 4378 5696 5696 1 DHEVLFPK Unmodified 983.50763 0.50763136 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 5 0 1 44.705 44.705 3 0.021308 11894 TMT1-4 61.962 36.403 169.56 254.33 141.45 154.82 153.19 205.63 160 252 152 152 160 197 1 1 1 1 1 1 19865 2728 1095 2708 4379 5697 5697 1 DHFEEAMR Unmodified 1033.4287 0.42872911 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2 0 1 33.017 33.017 3 0.005948 8171 TMT1-1 81.296 56.477 38.32 27.801 28.197 29.629 20.609 30.326 36 29 29 29 22 29 1 1 1 1 1 1 2591.8 2729 1311 2709 4380 5698 5698 1 DHFGLEGDEESTMLEDSVSPK Unmodified 2321.0005 0.0005364496 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.33 0.471 2 1 61.587 61.587 3;4 3.1153E-31 19511 TMT1-1 145.88 131.87 230.69 264.28 318.26 221.77 275.65 326.86 218 268 319 225 284 314 3 3 3 3 3 3 61045 2730 3010 2710 4381;4382;4383 5699;5700;5701 5700 3 DHGLPGYNAWR Unmodified 1284.6 0.59996862 489 P05164-2;P05164;P05164-3;P11678 MPO;EPX Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain;Eosinophil peroxidase;Eosinophil peroxidase light chain;Eosinophil peroxidase heavy chain yes no 0 0 0 0 0 5.5 0.5 1 1 43.082 43.082 3 0.0016249 11273 TMT1-4 80.24 68.074 260.87 440.87 325.32 259.1 360.51 334.03 247 436 337 261 367 323 2 2 2 2 2 2 48529 2731 489 2711 4384;4385 5702;5703 5702 2 DHGVNSFLVYMAFK Unmodified 1626.7864 0.78644876 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 9 0 1 71.722 71.722 3 4.9057E-07 20341 TMT1-8 103.76 80.883 54.158 73.474 32.646 36.48 49.046 76.418 51 73 36 36 51 73 1 1 1 1 1 1 9204 2732 1892 2712 4386 5704 5704 1 DHIIDDALVR Unmodified 1165.6091 0.60913632 1590 Q05086-2;Q05086-3;Q05086 UBE3A Ubiquitin-protein ligase E3A yes no 0 0 0 0 0 3 0 1 46.706 46.706 3 0.034835 13982 TMT1-2 48.981 27.474 30.584 66.543 33.176 36.566 42.775 45.683 29 65 36 36 44 44 1 1 1 1 1 1 5565.6 2733 1590 2713 4387 5705 5705 1 DHINDIIK Unmodified 966.51345 0.51344502 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 43.066 43.066 3 0.0043286 11270 TMT1-4 87.308 30.578 177.31 143.34 194.08 190.74 226.85 266.42 167 149 196 189 234 256 1 1 1 1 1 1 28830 2734 1139 2714 4388 5706 5706 1 DHINLPGFSGQNPLR Unmodified 1663.8431 0.84305243 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 8 0.816 1 1 1 55.45 55.45 3 7.8126E-11 15707 TMT1-6 124.16 118.29 362.79 422 343.39 328.85 430.55 485.54 342 425 356 327 442 467 3 3 3 3 3 3 119440 2735 394 2715 4389;4390;4391 5707;5708;5709;5710 5708 4 DHINLPGFSGQNPLRGPNDER Unmodified 2332.1309 0.13085461 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 1 6 0 1 51.409 51.409 4 3.6174E-07 14672 TMT1-5 81.576 67.322 169.44 266.96 150.05 139.16 145.24 214.39 160 264 160 138 152 205 1 1 1 1 1 1 34593 2736 394 2716 4392 5711 5711 1 DHLLSVSLSGYINYLDR Unmodified 1964.0003 0.0003409361 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 8 0.816 1 1 1 72.164 72.164 3 1.8157E-40 20475 TMT1-8 175.61 151.32 253.95 379.34 279.12 238.3 334.58 385.94 240 377 290 239 343 371 6 6 6 6 6 6 69360 2737 250 2717 4393;4394;4395 5712;5713;5714;5715;5716;5717 5716 6 DHLYGTLDPNTR Unmodified 1400.6684 0.66844211 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 40.469 40.469 3 0.0029784 10521 TMT1-3 69.641 38.001 46.719 57.999 33.633 35.992 71.846 83.23 44 58 36 36 73 80 1 1 1 1 1 1 7539.1 2738 1763 2718 4396 5718 5718 1 DHNNEIVK Unmodified 967.47231 0.47230849 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 3 1 1 1 29.98 29.98 3 0.0075621 7036 TMT1-1 77.677 36.69 137.99 157.88 119.13 109.23 149.32 135.38 130 159 124 109 152 131 2 2 2 2 2 2 9409.7 2739 1723 2719 4397;4398 5719;5720 5719 2 DHPFGFVAVPTK Unmodified 1313.6768 0.67682195 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 0 8 0 1 55.355 55.355 3 0.00041886 15704 TMT1-7 86.772 65.932 160.92 235.35 165.8 169.18 184.43 220.73 152 234 174 167 191 212 1 1 1 1 1 1 39381 2740 1480 2720 4399 5721 5721 1 DHPHTAAYLQELGR Unmodified 1606.7852 0.7852032 2008 Q6GMV3 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 0 0 0 0 0 4 0 1 37.619 37.619 4 1.3899E-07 9377 TMT1-3 109.16 81.105 77.251 93.098 102.24 48.324 70.473 106.72 73 94 102 51 73 102 1 1 1 1 1 1 13215 2741 2008 2721 4400 5722 5722 1 DHPLPEVAHVK Unmodified 1240.6564 0.65642086 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 37.09 37.09 4 2.7564E-06 8902 TMT1-4 120.96 96.805 1455.2 2342.9 1767.3 1624.8 1981.2 2241.8 1377 2322 1837 1617 2039 2156 3 3 3 3 3 3 172500 2742 677 2722 4401;4402 5723;5724;5725 5725 3 DHQVLIK Unmodified 851.4865 0.48650199 1620 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 5.5 0.5 1 1 35.979 35.979 3 0.020417 8573 TMT1-5 66.993 15.421 275.21 483.27 404.93 283.56 493.22 396.34 261 478 414 290 497 385 3 3 3 3 3 3 18504 2743 1620 2723 4403;4404 5726;5727;5728 5727 3 DHQYQFLEDAVR Unmodified 1519.7056 0.7055559 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 3 0 1 50.457 50.457 3 0.0028739 15499 TMT1-2 70.089 51.261 46.408 64.69 80.222 49.908 56.051 67.691 44 65 80 51 58 65 1 1 1 1 1 1 15033 2744 1688 2724 4405 5729 5729 1 DHSFLGFEWQK Unmodified 1392.6463 0.64625011 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 7 0 1 62.6 62.6 3 6.547E-06 18454 TMT1-6 116.55 92.941 76.747 154.29 135.16 101.34 111.23 158.86 73 152 138 102 116 152 1 1 1 1 1 1 30832 2745 289 2725 4406 5730 5730 1 DHSGTLGPEEFK Unmodified 1315.6044 0.60444487 672 P12814;P12814-3 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.5 0.5 1 1 43.114 43.114 3 4.3348E-11 11436 TMT1-3 162.49 143.41 642.24 701.92 928.94 547.55 952.3 990.86 607 715 923 568 967 955 3 3 3 3 3 3 153650 2746 672 2726 4407;4408 5731;5732;5733 5732 3 DHSHTPWIVIIAK Unmodified 1515.8198 0.8197978 1721 Q13564-3;Q13564-2;Q13564;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 0 0 8 0 1 55.569 55.569 4 0.020145 15772 TMT1-7 48.513 33.311 46.591 65.198 49.069 44.143 54.447 122.1 44 65 51 44 58 116 1 1 1 1 1 1 5001.5 2747 1721 2727 4409 5734 5734 1 DHTNAQFK Unmodified 959.44609 0.44609374 281 O75489;O75489-2 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 0 0 0 0 0 5 0 1 29.324 29.324 3 0.00048629 5836 TMT1-4 81.594 37.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2748 281 2728 4410 5735 5735 1 DHYDATYHK Unmodified 1148.4887 0.48868683 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 3 0 1 29.322 29.322 4 0.0050929 7048 TMT1-2 72.643 47.257 69.033 55.847 72.373 65.41 70.237 90.738 65 58 73 65 73 87 1 1 1 1 1 1 3494.2 2749 856 2729 4411 5736 5736 1 DHYDLLQR Unmodified 1058.5145 0.51450765 2331 Q92918-2;Q92918 MAP4K1 Mitogen-activated protein kinase kinase kinase kinase 1 yes no 0 0 0 0 0 3 0 1 39.106 39.106 3 0.0012363 10939 TMT1-2 106.04 71.964 54.285 26.337 51.339 44.662 19.662 37.815 51 29 51 44 22 36 1 1 1 1 1 1 3666 2750 2331 2730 4412 5737 5737 1 DIAANEENRK Unmodified 1158.5629 0.56291441 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 1 2.5 0.5 1 1 30.369 30.369 3 7.1125E-05 7276 TMT1-1 89.403 72.566 250.89 320.65 301.75 222.61 167.29 343.81 237 322 307 223 181 327 1 1 1 1 1 1 41959 2751 269 2731 4413;4414 5738;5739 5738 2 DIAAYIK Unmodified 792.43815 0.43815481 2402 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 0 0 0 0 0 6.5 0.5 1 1 56.105 56.105 2;3 0.0078611 16507 TMT1-5 122.78 50.542 718.19 1037.3 865.24 812.88 1052.1 1142.6 679 1034 894 809 1079 1100 2 2 2 2 2 2 89826 2752 2402 2732 4415;4416 5740;5741 5740 2 DIADTYKVETDIIVADFSSGR Unmodified 2314.1329 0.13287125 1930 Q3SXM5 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes yes 0 0 0 0 1 5 0 1 79.126 79.126 4 0.035982 25440 TMT1-4 35.538 20.448 15.744 36.778 27.771 29.665 20.058 46.332 15 36 29 29 22 44 1 1 1 1 1 1 3195.8 2753 1930 2733 4417 5742 5742 1 DIAVLFTK Unmodified 905.52222 0.52221879 1628 Q08AF3 SLFN5 Schlafen family member 5 yes yes 0 0 0 0 0 8 0 1 68.815 68.815 2 0.010496 20981 TMT1-7 99.136 0 99.412 145.56 120.39 77.705 136.12 135.76 94 145 123 80 138 131 1 1 1 1 1 1 15329 2754 1628 2734 4418 5743 5743 1 DIAWTEDSK Unmodified 1063.4822 0.48220447 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 4 0 1 51.279 51.279 3 0.00011786 14781 TMT1-3 91.087 58.928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2755 250 2735 4419 5744 5744 1 DIAWTEDSKR Unmodified 1219.5833 0.5833155 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 1 4.5 0.5 1 1 43.018 43.018 3 0.00025147 11206 TMT1-4 106.35 75.168 509.42 885.42 735.68 597.55 765.68 723.28 483 876 756 600 782 699 2 2 2 2 2 2 69498 2756 250 2736 4420;4421 5745;5746 5746 2 DICNDVLSLLEK Unmodified 1417.7123 0.71228076 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 0 5.43 2.06 1 2 2 1 1 82.857 82.857 2;3 2.0434E-09 26727 TMT1-4 153.74 126.62 2072.3 2353.9 2633.5 2012.9 2545.2 2567.9 1957 2385 2657 2029 2606 2477 10 10 10 10 10 10 618280 2757 1471 2737 4422;4423;4424;4425;4426;4427;4428 5747;5748;5749;5750;5751;5752;5753;5754;5755;5756 5749 10 DIDDDLEGEVTEECGK Unmodified 1822.7415 0.74146822 2869 Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 0 2 0 1 58.772 58.772 3 8.7275E-12 18366 TMT1-1 124.09 99.536 23.186 44.706 32.719 77.079 40.4 60.675 22 44 36 73 44 58 1 1 1 1 1 1 8395.2 2758 2869 2738 4429 5757 5757 1 DIDEVSSLLR Unmodified 1145.5928 0.59281755 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 4 0 1 64.522 64.522 2 9.6608E-29 20041 TMT1-3 209.58 130.47 207.02 276.51 318.37 229.74 258.24 335.88 196 278 320 232 268 322 2 2 2 2 2 2 99996 2759 1232 2739 4430 5758;5759 5759 2 DIDGHMVNLDK Unmodified 1255.5867 0.58668632 1048 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 0 0 4 0 1 48.63 48.63 3 0.001084 13744 TMT1-3 85.845 53.783 77.142 108.98 107.14 86.847 98.809 113.37 73 109 109 87 102 109 1 1 1 1 1 1 10967 2760 1048 2740 4431 5760 5760 1 DIDIHEVR Unmodified 995.50361 0.50360861 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 2.5 0.5 1 1 38.333 38.333 3 0.001154 10601 TMT1-2 111.82 73.582 253.04 335.62 288.65 253.43 371.5 387.02 239 336 297 254 379 373 2 2 2 2 2 2 111050 2761 1545 2741 4432;4433 5761;5762 5762 2 DIDISSPEFK Unmodified 1149.5554 0.55536941 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 58.932 58.932 3 9.4757E-05 17794 TMT1-3 85.958 52.092 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2762 1632 2742 4434 5763 5763 1 DIDNLVQR Unmodified 971.50361 0.50360861 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 4 0 1 46.493 46.493 2 0.0062236 12890 TMT1-3 72.23 25.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2763 1174 2743 4435 5764 5764 1 DIDPQNDLTFLR Unmodified 1445.7151 0.71505795 2262 Q8TF09;Q9NP97 DYNLRB2;DYNLRB1 Dynein light chain roadblock-type 2;Dynein light chain roadblock-type 1 yes no 0 0 0 0 0 4 0 2 66.341 66.341 2;3 0.00018186 20676 TMT1-3 103.18 72.863 115.59 138.22 112.8 86.041 181.82 103.54 109 139 116 88 181 102 3 3 3 3 3 3 19115 2764 2262 2744 4436;4437 5765;5766;5767 5765 3 DIDSFVPSK Unmodified 1006.4971 0.49712625 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 57.883 57.883 2;3 0.0010999 17296 TMT1-5 83.358 38.911 92.537 77.694 70.94 65.506 69.683 106.74 87 80 73 65 73 102 1 1 1 1 1 1 5885.5 2765 631 2745 4438;4439 5768;5769 5769 2 DIDTAAK Unmodified 732.36538 0.3653838 499 P05496;Q06055;P48201;Q06055-3;Q06055-2 ATP5G1;ATP5G2;ATP5G3 ATP synthase F(0) complex subunit C1, mitochondrial;ATP synthase F(0) complex subunit C2, mitochondrial;ATP synthase F(0) complex subunit C3, mitochondrial yes no 0 0 0 0 0 2.5 1.12 1 1 1 1 37.33 37.33 2 0.0015156 10053 TMT1-1 146.94 35.667 2134.8 2603.9 2381.9 2193.6 2799.3 1994.6 2015 2620 2446 2185 2838 1946 6 6 6 6 6 6 359010 2766 499 2746 4440;4441;4442;4443 5770;5771;5772;5773;5774;5775 5772 6 DIEDVFYK Unmodified 1027.4862 0.48622722 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 5 0 1 63.948 63.948 3 0.0037923 19477 TMT1-4 89.298 50.15 61.39 55.993 94.459 80.364 76.879 90.548 58 58 94 80 80 87 1 1 1 1 1 1 7383.6 2767 1615 2747 4444 5776 5776 1 DIEEHLQR Unmodified 1038.5094 0.50942227 2925 Q9UNE7-2;Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP yes no 0 0 0 0 0 2 0 1 33.235 33.235 3 0.00023258 8278 TMT1-1 91.853 48.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2768 2925 2748 4445 5777 5777 1 DIEEIIDELK Unmodified 1215.6234 0.62344898 791 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 83.313 83.313 3 0.00221 28090 TMT1-2 82.261 58.883 85.823 93.556 103.91 91.221 108.29 75.176 81 95 103 89 110 73 4 4 3 3 4 3 8184.8 2769 791 2749 4446;4447 5778;5779;5780;5781 5778 4 DIELQIR Unmodified 885.49198 0.4919813 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 4 0 1 51.395 51.395 2 0.021823 14785 TMT1-3 96.19 19.133 224.22 319.68 276.46 187.45 198.79 296.01 212 319 282 190 208 283 1 1 1 1 1 1 68226 2770 68 2750 4448 5782 5782 1 DIELVMSQANVSR Unmodified 1460.7293 0.72932781 36 Q13765;E9PAV3-2;E9PAV3 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 0 5 0 1 60.152 60.152 3 3.1417E-05 17974 TMT1-4 79.639 20.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2771 36 2751 4449 5783 5783 1 DIEQSIK Unmodified 831.4338 0.43379771 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 4 0 1 44.031 44.031 2 0.0084 11910 TMT1-3 116.73 27.583 298.5 576.84 378.19 318.1 310.33 589.17 283 567 396 317 330 561 1 1 1 1 1 1 35940 2772 598 2752 4450 5784 5784 1 DIEQVPQQPTYVQALFDFDPQEDGELGFR Unmodified 3380.5837 0.58371601 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 90.116 90.116 4 5.5871E-05 29826 TMT1-3 52.824 47.223 46.789 59.272 20.865 63.264 19.875 62.327 44 59 22 59 22 59 4 4 2 3 2 4 21198 2773 1464 2753 4451;4452 5785;5786;5787;5788 5785 4 DIEREDIEFICK Unmodified 1565.7396 0.73955814 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 1 4 0 1 56.813 56.813 3 0.00020361 16973 TMT1-3 97.69 72.835 176.59 203.92 264.23 186.2 246.26 286.12 167 207 264 189 253 275 1 1 1 1 1 1 34537 2774 1233 2754 4453 5789 5789 1 DIESEASNSACIDK Unmodified 1537.6566 0.65661638 3091 yes yes 0 0 0 0 0 2 0 1 62.976 62.976 3 0.0035498 20065 TMT1-1 62.891 32.832 68.908 94.356 60.626 82.944 46.909 76.479 65 94 65 80 51 73 1 1 1 1 1 1 33799 + 2775 3091 2755 4454 5790 5790 1 DIETFYNTSIEEMPLNVADLI Unmodified 2426.1563 0.15630881 1358 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 0 0 0 5 0 1 107.91 107.91 3 9.0868E-06 33733 TMT1-4 73.11 60.058 0 3.176 0.95528 3.279 2.092 1.066 0 3 1 3 2 1 0 2 1 1 1 1 3580.3 2776 1358 2756 4455 5791;5792 5791 2 DIEYFVNQR Unmodified 1182.5669 0.56693715 2662 Q9H939 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes yes 0 0 0 0 0 5 0 1 55.846 55.846 2 0.00064249 16300 TMT1-4 132.08 92.017 317.09 505.34 379.7 329.78 149.87 494.61 300 501 394 325 174 468 1 1 1 1 1 1 67678 2777 2662 2757 4456 5793 5793 1 DIFGLLQAYADGVDLTEK Unmodified 1966.9888 0.9887732 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 7.33 0.471 2 1 96.507 96.507 3;4 2.3174E-06 31333 TMT1-6 88.551 65.676 55.397 26.372 44.793 45.699 42.062 54.232 52 29 45 44 44 52 3 3 3 2 3 3 9327.2 2778 156 2758 4457;4458;4459 5794;5795;5796 5794 3 DIFPYSENK Unmodified 1111.5186 0.51858998 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 0 5 0 1 55.129 55.129 3 0.00039971 16028 TMT1-4 107.15 70.82 92.217 146.96 66.093 81.051 130.25 89.025 87 145 73 80 131 87 1 1 1 1 1 1 8426.7 2779 279 2759 4460 5797 5797 1 DIFQEIFDK Unmodified 1153.5655 0.56554017 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 6 0 1 80.123 80.123 2 0.00061757 25983 TMT1-5 132.78 78.574 99.564 153.54 88.099 87.426 128.34 135.98 94 152 94 87 131 131 1 1 1 1 1 1 16881 2780 1164 2760 4461 5798 5798 1 DIGAIAQVHAENGDIIAEEQQR Unmodified 2376.167 0.16696535 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 3 0 1 54.982 54.982 3 3.4851E-37 17228 TMT1-2 152.13 138.79 15.656 45.166 35.551 13.732 28.926 22.627 15 44 36 15 29 22 1 1 1 1 1 1 10207 2781 1892 2761 4462 5799 5799 1 DIGAIAR Unmodified 714.40244 0.40243801 2503 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 0 5.17 2.79 1 1 1 1 1 1 38.825 38.825 2 0.0049812 9812 TMT1-3 135.5 135.5 16861 25297 17906 18825 25498 30279 15932 25125 18805 18638 26198 29087 9 9 9 9 9 9 2887100 2782 2503 2762 4463;4464;4465;4466;4467;4468 5800;5801;5802;5803;5804;5805;5806;5807;5808;5809 5804 10 DIGPEVVK Unmodified 855.47018 0.47018322 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 4 0 1 48.17 48.17 2 0.02931 13544 TMT1-3 82.279 35.853 84.445 123 130.15 84.907 129.01 119.97 80 123 131 87 131 116 1 1 1 1 1 1 10615 2783 1250 2763 4469 5810 5810 1 DIHDDQDYLHSLGK Unmodified 1654.7587 0.75871368 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 4 0 1 50.077 50.077 4 0.00035502 14260 TMT1-3 76.759 59.643 169.77 178.29 170.22 145.74 138.48 188.99 160 181 174 145 145 181 1 1 1 1 1 1 31994 2784 318 2764 4470 5811 5811 1 DIHSGLIGPLLICQK Unmodified 1662.9127 0.9127119 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 8 0 1 64.716 64.716 4 0.00019357 19362 TMT1-7 77.527 58.698 77.18 109.09 100.6 63.574 78.457 67.051 73 109 102 65 80 65 1 1 1 1 1 1 10561 2785 666 2765 4471 5812 5812 1 DIHYSVK Unmodified 860.43922 0.43921744 2989 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 0 5 0 1 37.791 37.791 3 0.0016383 9169 TMT1-4 77.058 22.649 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2786 2989 2766 4472 5813 5813 1 DIIACGFDINK Unmodified 1264.6122 0.61217279 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 6 0 1 64.614 64.614 3 5.9651E-08 19912 TMT1-5 108.7 77.825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2787 860 2767 4473 5814 5814 1 DIIFAIK Unmodified 818.49019 0.49019038 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 8 0 1 66.75 66.75 2 0.0021528 20252 TMT1-7 143.46 68.714 254.51 296.73 254.05 232.31 325.73 438.43 240 299 262 232 336 420 2 2 2 2 2 2 34341 2788 645 2768 4474 5815;5816 5816 2 DIIFELR Unmodified 904.50182 0.5018177 2301 Q92556 ELMO1 Engulfment and cell motility protein 1 no no 0 0 0 0 0 5 0 1 64.3 64.3 2 0.0076556 19582 TMT1-4 125.25 54.985 77.174 124.18 88.871 112.17 88.755 128.59 73 123 94 109 94 123 1 1 1 1 1 1 21551 2789 2301 2769 4475 5817 5817 1 DIIHDPGR Unmodified 921.46683 0.46682918 1460 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 0 2.5 0.5 1 1 32.661 32.661 3 0.0020352 8295 TMT1-2 99.136 56.012 209.01 268.21 170.58 206.5 276.96 278.85 197 268 182 203 283 269 3 3 3 3 3 3 50570 2790 1460 2770 4476;4477 5818;5819;5820 5819 3 DIILPFR Unmodified 872.51199 0.51198846 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 0 7 0 1 64.941 64.941 2 0.011654 19491 TMT1-6 104.11 9.9478 137.55 173.95 178.21 145.92 161.51 188.34 130 175 181 146 167 181 2 2 2 2 2 2 22910 2791 2387 2771 4478 5821;5822 5822 2 DIILQSNPLLEAFGNAK Unmodified 1841.9887 0.98871362 44 O00160;Q12965 MYO1F;MYO1E Unconventional myosin-If;Unconventional myosin-Ie yes no 0 0 0 0 0 8 0 2 83.792 83.792 3;4 1.873E-07 26804 TMT1-7 96.096 85.72 100.29 168.7 133.18 123.72 147.85 158.88 95 167 138 123 152 153 2 2 2 2 2 2 27202 2792 44 2772 4479;4480 5823;5824 5823 2 DIINMLFYHDR Unmodified 1435.6918 0.69182009 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 8 0 1 71.058 71.058 3 0.00059369 21858 TMT1-7 90.926 65.489 77.613 86.549 46.964 59.121 78.368 75.582 73 87 51 58 80 73 2 2 2 2 2 2 12884 2793 515 2773 4481 5825;5826 5825 2 DIISDTSGDFR Unmodified 1224.5622 0.5622457 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 2 0 1 52.969 52.969 2 0.0040058 16074 TMT1-1 89.029 58.232 46.551 73.721 48.558 44.129 56.829 52.744 44 73 51 44 58 51 1 1 1 1 1 1 11091 2794 534 2774 4482 5827 5827 1 DIISDTSGDFRK Unmodified 1352.6572 0.65720872 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 1 5 0 1 49.267 49.267 3 9.3211E-09 13697 TMT1-4 137.59 67.175 340.71 607.55 470.97 399.5 570.11 530.59 323 600 487 401 580 513 1 1 1 1 1 1 32547 2795 534 2775 4483 5828 5828 1 DIISIAEDEDLR Unmodified 1387.6831 0.68308912 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 2 0 1 65.414 65.414 2 2.265E-18 20921 TMT1-1 184.24 128.33 70.096 82.729 51.214 66.867 59.825 56.923 66 83 55 65 62 55 2 2 2 2 2 2 23529 2796 675 2776 4484 5829;5830 5830 2 DIKDTTVGTLSQR Unmodified 1432.7522 0.75217174 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 1 6 0 1 45.816 45.816 3 0.001408 12492 TMT1-5 65.212 31.984 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2797 1251 2777 4485 5831 5831 1 DIKPAATHHYLVVPK Unmodified 1687.941 0.94097556 2711 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 yes yes 0 0 0 0 1 8 0 1 42.328 42.328 5 0.00039213 10578 TMT1-7 75.383 49.259 130.31 164.41 141.54 108.29 127.93 120.01 123 165 145 109 131 116 1 1 1 1 1 1 7026.1 2798 2711 2778 4486 5832 5832 1 DILADLIPK Unmodified 996.58555 0.58554733 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 75.953 75.953 2 0.00060123 24416 TMT1-5 133.23 110.22 276.95 423.54 342.71 351.95 424.64 444.13 262 421 356 348 436 428 3 3 3 3 3 3 53259 2799 271 2779 4487;4488 5833;5834;5835 5834 3 DILCGAADEVLAVLK Unmodified 1585.8385 0.83854391 293 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 0 6 0 2 90.328 90.328 3 4.3099E-12 29678 TMT1-5 107.37 83.767 15.789 36.902 20.189 29.668 43.899 22.199 15 36 22 29 44 22 1 1 1 1 1 1 8934.7 2800 293 2780 4489;4490 5836;5837 5837 2 DILFPYIEENVK Unmodified 1478.7657 0.76569654 2871 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 0 0 6 0 1 75.651 75.651 3 0.045759 24280 TMT1-5 42.789 5.9417 77.681 71.628 48.184 51.819 55.963 67.693 73 73 51 51 58 65 1 1 1 1 1 1 8509.3 2801 2871 2781 4491 5838 5838 1 DILGGIR Unmodified 742.43374 0.43373813 2832 Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR2 GMP reductase 2 yes no 0 0 0 0 0 6 0 1 50.429 50.429 2 0.02412 14187 TMT1-5 94.401 25.168 92.193 123.15 90.326 79.207 151.51 111.87 87 123 94 80 152 109 1 1 1 1 1 1 27892 2802 2832 2782 4492 5839 5839 1 DILGIFPIK Unmodified 1014.6114 0.61136815 1989 Q5VWC8 HACD4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 yes yes 0 0 0 0 0 9 0 1 79.035 79.035 2 0.0083362 23241 TMT1-8 95.099 55.054 192.28 276.17 270.68 209.56 261.97 223.85 182 276 275 211 267 217 2 2 2 2 2 2 13270 2803 1989 2783 4493 5840;5841 5841 2 DILGIFPIKK Unmodified 1142.7063 0.70633117 1989 Q5VWC8 HACD4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 yes yes 0 0 0 0 1 9 0 1 69.08 69.08 3 0.041901 19281 TMT1-8 58.699 36.208 99.441 121.9 135.58 132.9 117.1 158.69 94 123 138 131 123 152 1 1 1 1 1 1 9264 2804 1989 2784 4494 5842 5842 1 DILLPVITK Unmodified 1010.6376 0.6375829 2305 Q92608;Q92608-2 DOCK2 Dedicator of cytokinesis protein 2 yes no 0 0 0 0 0 8 0 1 70.803 70.803 2 0.039855 21762 TMT1-7 70.056 52.671 108.22 130.48 95.935 135.92 81.91 82.943 102 131 102 131 87 80 1 1 1 1 1 1 16266 2805 2305 2785 4495 5843 5843 1 DILLRPELEELR Unmodified 1494.8406 0.84059282 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 1 3.33 1.7 1 1 1 60.778 60.778 3 5.0121E-06 18423 TMT1-3 115.12 75.971 533.78 789.84 690.3 576.3 760.7 653.07 505 787 708 578 774 633 5 5 5 5 5 5 170260 2806 388 2786 4496;4497;4498 5844;5845;5846;5847;5848 5845 5 DILLVNDHLLNFVR Unmodified 1679.9359 0.93589019 2743 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 0 8 0 1 72.076 72.076 3 0.00027247 22278 TMT1-7 78.401 58.352 23.071 35.752 59.611 19.826 35.462 37.364 22 36 58 22 36 36 1 1 1 1 1 1 4900.9 2807 2743 2787 4499 5849 5849 1 DILPCLDGYLK Unmodified 1305.6639 0.663874 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 6 0 1 74.697 74.697 2 1.4419E-07 23877 TMT1-5 114.86 67.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2808 1507 2788 4500 5850 5850 1 DILVATDVAGR Unmodified 1128.6139 0.61388734 2544 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 0 4 0 1 54.306 54.306 2 0.025352 15988 TMT1-3 68.49 36.425 77.115 124.02 98.985 79.686 98.625 128.3 73 123 102 80 102 123 1 1 1 1 1 1 10322 2809 2544 2789 4501 5851 5851 1 DILVEADSLWVVK Unmodified 1485.8079 0.80789571 1836 Q15208 STK38 Serine/threonine-protein kinase 38 yes yes 0 0 0 0 0 6 0 1 82.239 82.239 3 2.2447E-08 26812 TMT1-5 121.08 114.35 30.577 67.603 33.448 29.05 34.745 45.913 29 66 36 29 36 44 1 1 1 1 1 1 3576.7 2810 1836 2790 4502 5852 5852 1 DILVLPLDLTDTGSHEAATK Unmodified 2108.1001 0.10011456 2987 Q9Y394-2;Q9Y394 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 0 0 0 0 0 5 0 2 72.678 72.678 3;4 6.6668E-24 22888 TMT1-4 137.05 120.74 107.7 207.83 117.38 84.852 172.45 164.57 102 204 124 87 174 159 2 2 2 2 2 2 20330 2811 2987 2791 4503;4504 5853;5854 5853 2 DINAVAASLR Unmodified 1028.5615 0.56145784 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 52.795 52.795 2 0.02397 15291 TMT1-5 73.841 17.12 84.269 162.45 126.36 117.07 116.29 203.49 80 160 131 116 123 194 1 1 1 1 1 1 19435 2812 2073 2792 4505 5855 5855 1 DINAVLIDMER Unmodified 1287.6493 0.64928657 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 4 0 1 68.291 68.291 2 0.005015 21452 TMT1-3 87.001 36.394 38.039 58.319 49.516 44.348 42.161 53.163 36 58 51 44 44 51 1 1 1 1 1 1 5927.5 2813 1319 2793 4506 5856 5856 1 DINAYNCEEPTEK Unmodified 1581.6617 0.66170175 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 2.5 0.5 1 1 45.277 45.277 3 6.0584E-11 13290 TMT1-2 133.98 107.54 616.34 779.71 708.5 682.19 768.5 802.09 582 783 729 676 791 773 5 5 5 5 5 5 231170 2814 945 2794 4507;4508 5857;5858;5859;5860;5861 5860 5 DINAYNCEEPTEKLPFPIIDDR Unmodified 2648.2428 0.24283241 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 1 4.33 0.471 2 1 69.365 69.365 3;4 3.3181E-31 21555 TMT1-4 127.07 108.14 84.947 94.176 70.322 58.038 61.943 98.436 80 95 73 58 65 94 2 2 2 2 2 2 26800 2815 945 2795 4509;4510;4511 5862;5863;5864 5864 3 DINELNLPK Unmodified 1054.5659 0.56587452 1375 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 0 5.5 0.5 1 1 56.976 56.976 3 0.00052896 16723 TMT1-4 103.19 53.749 168.87 270.78 242.16 179.56 204.16 241.49 160 269 247 181 211 232 2 2 2 2 2 2 16754 2816 1375 2796 4512;4513 5865;5866 5865 2 DINQEVYNFLATAGAK Unmodified 1752.8683 0.86826413 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 82.251 82.251 3 1.3465E-08 26234 TMT1-6 107.34 96.523 182.85 238.61 264.71 249.44 252.99 279.53 173 240 269 247 262 269 4 4 4 4 4 4 43672 2817 2492 2797 4514;4515 5867;5868;5869;5870 5868 4 DINSLYDVSR Unmodified 1180.5724 0.57241646 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 4 0 1 53.588 53.588 2 3.0685E-06 15677 TMT1-3 156.57 96.974 61.285 87.002 85.732 64.486 77.059 106.53 58 87 87 65 80 102 1 1 1 1 1 1 11392 2818 750 2798 4516 5871 5871 1 DINTDFLLVVLR Unmodified 1416.7977 0.79766537 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 7 0 2 86.797 86.797 2;3 0.010568 27870 TMT1-6 73.632 44.834 38.078 81.591 57.526 27.491 41.339 69.176 36 80 59 29 43 66 1 2 2 2 2 2 14332 2819 1619 2799 4517;4518 5872;5873 5872 2 DINWDSSQWQPLIQDR Unmodified 1999.9388 0.93880331 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 6 0 1 72.311 72.311 3 0.0062122 22939 TMT1-5 39.338 20.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2820 2328 2800 4519 5874 5874 1 DIPGLTDTTVPR Unmodified 1283.6721 0.67213051 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 0 4 0 1 56.203 56.203 2 4.2856E-05 16696 TMT1-3 111.27 69.817 77.473 86.159 70.869 57.409 93.655 59.156 73 87 73 58 94 58 1 1 1 1 1 1 15522 2821 1442 2801 4520 5875 5875 1 DIPIEVCPISNQVLK Unmodified 1723.9179 0.91785686 2798 Q9NZK5;Q9NZK5-2 CECR1 Adenosine deaminase CECR1 yes no 0 0 0 0 0 6 0 1 69.428 69.428 3 0.0045627 21815 TMT1-5 58.079 41.772 84.91 101.63 70.216 50.392 62.002 106.96 80 102 73 51 65 102 1 1 1 1 1 1 9726.7 2822 2798 2802 4521 5876 5876 1 DIPNENEAQFQIR Unmodified 1572.7532 0.75323437 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 2.5 0.5 1 1 52.144 52.144 3 1.5106E-11 16069 TMT1-2 144.51 116.07 146.66 249.46 206.91 103.44 178.84 197.44 139 247 210 109 182 190 4 4 4 4 4 4 26866 2823 1637 2803 4522;4523 5877;5878;5879;5880 5879 4 DIPNENELQFQIK Unmodified 1586.794 0.79403655 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 5 0 1 63.794 63.794 3 2.2435E-11 19405 TMT1-4 141.38 115.26 61.432 87.41 60.772 89.878 84.577 66.877 58 87 65 87 87 65 1 1 1 1 1 1 14057 2824 1467 2804 4524 5881 5881 1 DIPPILRPSLHSETWEIPFEK Unmodified 2503.3111 0.31111039 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 1 7 0 1 70.895 70.895 4 2.6211E-10 21768 TMT1-6 96.718 75.365 77.017 155.04 89.18 63.703 107.75 97.129 73 152 94 65 109 94 1 1 1 1 1 1 10015 2825 817 2805 4525 5882 5882 1 DIPYHNR Unmodified 913.44061 0.44061443 1776 Q14432;Q13370-2;Q13370 PDE3A;PDE3B cGMP-inhibited 3',5'-cyclic phosphodiesterase A;cGMP-inhibited 3',5'-cyclic phosphodiesterase B yes no 0 0 0 0 0 3 0 1 28.668 28.668 3 0.0017449 6789 TMT1-2 114.19 75.948 69.153 48.627 58.274 27.288 49.762 67.87 65 51 58 29 51 65 1 1 1 1 1 1 9879.4 2826 1776 2806 4526 5883 5883 1 DIQAAGGIVTAEDLNNYR Unmodified 1918.9385 0.93846896 792 P19440-2;P36268-2;P36268;P19440;P36268-3 GGT1;GGT2 Gamma-glutamyltranspeptidase 1;Gamma-glutamyltranspeptidase 1 heavy chain;Gamma-glutamyltranspeptidase 1 light chain;Inactive gamma-glutamyltranspeptidase 2 yes no 0 0 0 0 0 4 0 1 60.949 60.949 3 0.0013574 18664 TMT1-3 56.428 34.23 15.611 45.041 43.218 36.119 34.713 37.385 15 44 44 36 36 36 1 1 1 1 1 1 5482 2827 792 2807 4527 5884 5884 1 DIQDENQLLVADVK Unmodified 1598.8152 0.81516593 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 3.33 0.471 2 1 62.771 62.771 2;3;4 1.3951E-10 19206 TMT1-3 124.62 84.043 161.1 186.2 177.83 159.67 245.41 163.56 152 188 182 160 247 160 3 3 3 3 3 3 40663 2828 288 2808 4528;4529;4530 5885;5886;5887 5887 3 DIQDSLTVSNEVQTAK Unmodified 1746.8636 0.86357268 1143 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 0 4 0 1 56.483 56.483 3 4.4786E-20 16900 TMT1-3 159.34 154.14 299.75 367.7 344.96 228.31 308.45 276.89 283 370 350 233 314 268 2 2 2 2 2 2 63321 2829 1143 2809 4531 5888;5889 5889 2 DIQSLPR Unmodified 827.45012 0.45011648 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 4.5 0.5 1 1 40.154 40.154 2 0.0052504 10083 TMT1-4 134.81 53.027 692.01 933.9 663.15 682.5 779.47 939.29 653 932 696 674 806 902 2 2 2 2 2 2 141350 2830 2654;2802 2810 4532;4533 5890;5891 5891 2 DIQTNVYIK Unmodified 1092.5815 0.58152458 1158 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 0 6 0 2 51.791 51.791 2;3 0.0017667 14867 TMT1-5 90.15 50.441 231.17 266.71 234.5 179.88 269.57 316.37 218 269 240 182 276 304 2 2 2 2 2 2 28256 2831 1158 2811 4534;4535 5892;5893 5893 2 DIRDIQDENQLLVADVK Unmodified 1983.0273 0.027283968 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 1 4 0 1 62.891 62.891 3 4.1191E-19 19348 TMT1-3 139.46 125.15 154.27 127.08 113.95 71.023 105 167.56 145 131 116 73 109 160 1 1 1 1 1 1 19265 2832 288 2812 4536 5894 5894 1 DIREEAEK Unmodified 988.48254 0.48253882 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 1 2 0 1 33.672 33.672 3 0.019403 8408 TMT1-1 72.928 33.624 322.92 446.91 350.72 281.02 393.22 479.14 305 446 362 283 404 460 1 1 1 1 1 1 34727 2833 892 2813 4537 5895 5895 1 DISEASVFDAYVLPK Unmodified 1652.8298 0.82975336 1451 P62854 RPS26 40S ribosomal protein S26 yes yes 0 0 0 0 0 5.5 0.5 1 1 75.652 75.652 3 1.1486E-11 24204 TMT1-5 128.76 108.92 230.62 359.07 249.33 232.8 314.52 276.71 218 356 261 232 320 268 3 3 3 3 3 3 50804 2834 1451 2814 4538;4539 5896;5897;5898 5897 3 DISENKR Unmodified 860.43519 0.4351947 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 1 3 2 1 1 27.462 27.462 3 0.01436 5133 TMT1-4 83.614 20.897 1053 844.08 1015.5 867.56 1097.5 630.67 991 876 1026 868 1108 621 2 2 2 2 2 2 72722 2835 641 2815 4540;4541 5899;5900 5900 2 DISILQCHGDCDPLVPLMFGSLTVEK Unmodified 2943.418 0.41803636 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 7 0 1 85.484 85.484 4 4.3314E-29 27431 TMT1-6 124.45 118.61 61.576 64.067 56.314 51.344 55.435 83.698 58 65 58 51 58 80 1 1 1 1 1 1 6644.2 2836 291 2816 4542 5901 5901 1 DISLSDYK Unmodified 939.45493 0.45492709 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 5 0 1 54.271 54.271 2 0.00031216 15653 TMT1-4 152.63 63.08 765.63 1379.5 1077.1 811.87 1131.5 1359.9 726 1362 1109 821 1162 1306 2 2 2 2 2 2 223180 2837 1606 2817 4543 5902;5903 5902 2 DISPVLK Unmodified 770.4538 0.45380487 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 6 0 1 50.149 50.149 2 0.027841 14224 TMT1-5 91.626 7.7828 194.44 377.52 182.17 213.58 270.76 328.06 184 370 199 210 279 315 1 1 1 1 1 1 23008 2838 541 2818 4544 5904 5904 1 DISPVLKDPASFR Unmodified 1443.7722 0.7721789 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 1 7 0 1 55.386 55.386 3 0.00030211 15601 TMT1-6 89.359 66.867 178.83 466.65 387.14 254.77 336.73 483.95 171 456 395 260 349 463 1 1 1 1 1 1 100160 2839 541 2819 4545 5905 5905 1 DISQAYYTVYK Unmodified 1349.6503 0.65033243 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 6 0 1 58.404 58.404 2 2.4185E-06 17434 TMT1-5 131.83 84.935 30.555 43.797 57.344 59.048 49.364 36.967 29 44 58 58 51 36 1 1 1 1 1 1 5328.9 2840 670 2820 4546 5906 5906 1 DISSIGLK Unmodified 831.47018 0.47018322 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 7 0 1 54.229 54.229 2 0.0055907 15211 TMT1-6 116.73 59.445 438.55 589.73 633.13 512.64 549.47 706 415 592 641 513 571 677 1 1 1 1 1 1 48610 2841 2116 2821 4547 5907 5907 1 DISTLNSGK Unmodified 933.47673 0.47672516 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 6 0 1 43.467 43.467 3 0.0023332 11563 TMT1-5 86.136 36.322 169.28 255.71 187.34 191.65 200.23 218.15 160 254 196 189 207 210 1 1 1 1 1 1 19400 2842 478 2822 4548 5908 5908 1 DISTLNSGKK Unmodified 1061.5717 0.57168818 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 1 8 0 1 40.293 40.293 3 0.018608 9734 TMT1-7 62.799 26.466 265.87 409.09 233.43 275.38 193.17 342 251 405 251 268 208 326 1 1 1 1 1 1 17702 2843 478 2823 4549 5909 5909 1 DISTNYYASQK Unmodified 1288.5935 0.59354583 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 5 0 1 45.96 45.96 3 4.0099E-08 12449 TMT1-4 152.64 118.64 460.17 669.65 538.91 501.7 616 641.21 435 667 558 499 632 618 2 2 2 2 2 2 145700 2844 708 2824 4550 5910;5911 5911 2 DISTTLNADEAVAR Unmodified 1474.7264 0.72635092 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa no no 0 0 0 0 0 2.5 0.5 1 1 51.452 51.452 3 1.4966E-05 15729 TMT1-2 96.371 62.481 115.09 198.34 146.17 130.5 153 213.1 109 196 152 130 159 204 2 2 2 2 2 2 14455 2845 2303 2825 4551;4552 5912;5913 5913 2 DITDTLVAVTISEGAHHLDLR Unmodified 2275.1808 0.1808245 1104 P42785;P42785-2 PRCP Lysosomal Pro-X carboxypeptidase yes no 0 0 0 0 0 5 0 1 74.374 74.374 4 7.8283E-05 23540 TMT1-4 63.869 60.945 30.642 44.04 42.476 52.425 41.79 53.174 29 44 44 51 44 51 1 1 1 1 1 1 7342.4 2846 1104 2826 4553 5914 5914 1 DITIHANPFAQ Unmodified 1225.6091 0.60913632 2629 Q9H2H8;Q9H2H8-2 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes no 0 0 0 0 0 6 0 1 58.567 58.567 2 0.0038175 17531 TMT1-5 62.558 36.939 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2847 2629 2827 4554 5915 5915 1 DITLEASR Unmodified 903.46616 0.46616048 1472 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 0 0 0 3 0 1 42.043 42.043 2 0.030822 12171 TMT1-2 81.191 44.17 138.38 173.2 219.52 118.31 161.72 219.25 131 175 218 123 167 210 1 1 1 1 1 1 16663 2848 1472 2828 4555 5916 5916 1 DITPLQVVLPNTALHLK Unmodified 1871.088 0.088033731 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 8 0 1 72.036 72.036 4 9.4864E-05 22351 TMT1-7 76.391 51.069 77.542 62.608 79.139 73.492 84.011 105.27 73 65 80 73 87 101 2 2 2 2 2 2 9173.6 2849 1796 2829 4556 5917;5918 5918 2 DITSDTSGDFR Unmodified 1212.5259 0.5258602 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 2.5 0.5 1 1 43.539 43.539 2 6.8736E-54 12462 TMT1-1 236.03 220.88 429.6 865.58 461.98 462.29 514.32 761.37 407 848 496 457 537 728 4 4 4 4 4 4 182630 2850 461 2830 4557;4558 5919;5920;5921;5922 5920 4 DITSSIHFEAYR Unmodified 1437.6888 0.6888432 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 5 0 1 52.152 52.152 3 6.3602E-09 14831 TMT1-4 136.27 110.23 130.46 150.8 127.52 101.49 127.18 150.94 123 152 131 102 131 145 1 1 1 1 1 1 19028 2851 2864 2831 4559 5923 5923 1 DITVESK Unmodified 790.40725 0.40724861 2475 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 0 4 0 1 41.595 41.595 2 0.040438 10947 TMT1-3 86.011 23.293 248.14 164.42 174.79 150.15 296.09 193.02 233 173 178 152 296 189 1 1 1 1 1 1 11718 2852 2475 2832 4560 5924 5924 1 DITYFIQQLLR Unmodified 1408.7715 0.77145062 1379 P61158;Q9P1U1-2;Q9P1U1;Q9C0K3;Q9P1U1-3 ACTR3;ACTR3B;ACTR3C Actin-related protein 3;Actin-related protein 3B;Actin-related protein 3C yes no 0 0 0 0 0 9 0 1 95.218 95.218 2 2.2541E-30 29369 TMT1-8 209.86 160.42 651.75 826.94 668.04 599.83 742.42 1032 615 829 691 598 770 988 3 3 3 3 3 3 305150 2853 1379 2833 4561 5925;5926;5927 5926 3 DIVAGDMSK Unmodified 934.44298 0.44298219 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 5 0 1 47.162 47.162 2 0.015524 12877 TMT1-4 81.338 40.392 138.05 256.46 205.07 136.16 130.28 227.6 131 253 210 138 138 217 1 1 1 1 1 1 12367 2854 1000 2834 4562 5928 5928 1 DIVEMLFTQPNIELNQQNK Unmodified 2273.1362 0.13618249 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 7 0 1 84.818 84.818 4 1.1953E-06 27159 TMT1-6 79.805 60.513 30.617 59.08 33.954 29.158 27.411 46.122 29 58 36 29 29 44 1 1 1 1 1 1 9708.7 2855 2324 2835 4563 5929 5929 1 DIVEYAELK Unmodified 1078.5546 0.55464113 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 4 0 1 61.314 61.314 3 0.0032026 18704 TMT1-3 79.974 41.681 91.929 138.6 121.54 62.079 91.572 113.58 87 138 123 65 94 109 1 1 1 1 1 1 14797 2856 2079 2836 4564 5930 5930 1 DIVPGDIVEIAVGDK Unmodified 1538.8192 0.81918867 748 P16615;P16615-5;P16615-2;P16615-3 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 5 0 1 78.765 78.765 3 0.0007828 25310 TMT1-4 70.98 48.101 23.175 44.676 34.523 36.633 34.946 29.917 22 44 36 36 36 29 1 1 1 1 1 1 3380.4 2857 748 2837 4565 5931 5931 1 DIVPGDIVEIAVGDKVPADIR Unmodified 2190.1896 0.18959827 748 P16615;P16615-5;P16615-2;P16615-3 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 1 5.33 0.471 2 1 77.449 77.449 3;4 2.4349E-07 24736 TMT1-4 84.919 71.188 122.91 120.98 159.75 123.37 82.203 91.194 116 124 160 123 87 87 3 3 3 3 3 2 45055 2858 748 2838 4566;4567;4568 5932;5933;5934 5932 3 DIVPGDIVEVAVGDK Unmodified 1524.8035 0.80353861 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 no no 0 0 0 0 0 4 0 1 74.856 74.856 3 2.6634E-05 23994 TMT1-3 89.911 79.854 99.724 100.02 106.54 109.81 158.22 119.14 94 102 109 109 160 116 2 2 2 2 2 2 22671 2859 2344 2839 4569 5935;5936 5935 2 DIVPGDIVEVAVGDKVPADLR Unmodified 2176.1739 0.17394821 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 1 5 0 2 75.679 75.679 3;4 1.4964E-13 24123 TMT1-4 107.15 0 221.85 311.65 320.26 308.46 309.43 323.76 210 312 327 305 320 312 3 3 3 3 3 3 146180 2860 2344 2840 4570;4571 5937;5938;5939 5939 3 DIVQFVPFR Unmodified 1119.6077 0.60767976 252;2403 O75131;Q86YQ8-2;Q9HCH3-2;Q8IYJ1;Q96A23;O95741;Q9UBL6-2;Q86YQ8;Q96A23-2;Q9HCH3;O95741-2;Q9UBL6;Q96FN4-2;Q96FN4 CPNE3;CPNE8;CPNE5;CPNE9;CPNE4;CPNE6;CPNE7;CPNE2 Copine-3;Copine-8;Copine-5;Copine-9;Copine-4;Copine-6;Copine-7;Copine-2 no no 0 0 0 0 0 8 0 1 69.156 69.156 2 0.001646 21109 TMT1-7 116.25 70.532 238.36 265.3 289.51 160.58 249.55 255.12 225 269 290 167 254 246 2 2 2 2 2 2 47248 2861 252;2403 2841 4572 5940;5941 5940 2 DIVQFVPYR Unmodified 1135.6026 0.60259438 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 6 0 1 61.459 61.459 2 0.0010405 18667 TMT1-5 84.213 37.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2862 2495 2842 4573 5942 5942 1 DIVSGLK Unmodified 730.4225 0.42250475 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 0 4.67 2.62 1 1 1 50.855 50.855 2 0.0018627 14403 TMT1-5 145.04 60.686 4849.6 7634.6 5492.8 4798.3 5547.9 7687.4 4586 7569 5720 4785 5767 7360 5 5 5 5 5 5 867250 2863 1269 2843 4574;4575;4576 5943;5944;5945;5946;5947 5945 5 DIVTVANAVFVK Unmodified 1274.7234 0.72343779 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 9 0 1 72.052 72.052 2 4.9695E-08 20509 TMT1-8 134.3 75.489 46.991 19.899 20.339 45.669 64.381 44.001 44 22 22 44 65 43 1 1 1 1 1 1 3458.7 2864 525 2844 4577 5948 5948 1 DIYQDLNR Unmodified 1035.4985 0.49852324 1110 P43246-2;P43246 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 0 3 0 1 45.991 45.991 2 0.006302 13681 TMT1-2 72.042 60.631 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2865 1110 2845 4578 5949 5949 1 DKADFCIIHYAGK Unmodified 1536.7395 0.73949856 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 7.5 0.5 1 1 51.805 51.805 4 0.0015776 14167 TMT1-6 73.927 54.088 1618.7 1996.1 1997.5 1666.9 1568.1 2579.7 1529 2010 2033 1661 1657 2462 3 3 3 3 3 3 179340 2866 1019;1020 2846 4579;4580 5950;5951;5952 5950 3 DKAPGQLECETAIAALNSCLR Unmodified 2316.1202 0.12021485 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4.2 2.64 2 2 1 62.358 62.358 3;4 2.2039E-52 18837 TMT1-5 193.87 166.6 1038.5 1253 1305.3 1051.5 1150.6 1365.8 981 1264 1324 1053 1191 1312 8 8 8 8 8 8 857590 2867 3010 2847 4581;4582;4583;4584;4585 5953;5954;5955;5956;5957;5958;5959;5960 5958 8 DKASQEGGDVLGAR Unmodified 1401.6848 0.68482046 1972 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 yes yes 0 0 0 0 1 4 0 1 36.259 36.259 3 0.00044694 8839 TMT1-3 67.579 41.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2868 1972 2848 4586 5961 5961 1 DKAVESLR Unmodified 916.49779 0.49779495 956 P30153;P30154-4;P30154;P30154-2;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 1 5 0 1 34.064 34.064 3 0.0027151 7685 TMT1-4 79.489 23.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2869 956 2849 4587 5962 5962 1 DKCEPLEK Unmodified 1017.4801 0.48009598 444 P02763 ORM1 Alpha-1-acid glycoprotein 1 no no 0 0 0 0 1 4 0 1 37.329 37.329 3 0.021761 9252 TMT1-3 71.016 27.932 129.33 277.16 210.78 126.81 202.66 234.07 123 272 216 131 207 225 1 1 1 1 1 1 9949.1 2870 444 2850 4588 5963 5963 1 DKCQCPPNFTGK Unmodified 1450.6333 0.63331893 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 7 0 1 40.579 40.579 3 0.006048 9800 TMT1-6 67.93 48.536 192.55 265.05 234.79 179.98 263.46 311.22 182 265 240 182 270 299 2 2 2 2 2 2 19960 2871 1797 2851 4589 5964;5965 5964 2 DKDDELSFMEGAIIYVIK Unmodified 2085.034 0.03400883 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q8IZP0-11 ABI1 Abl interactor 1 yes no 0 0 0 0 1 6 0 2 88.703 88.703 3;4 1.9149E-07 29307 TMT1-5 92.474 73.936 61.622 64.196 48.375 59.357 61.333 114.44 58 65 51 58 65 109 2 2 2 2 2 2 9373.4 2872 2158 2852 4590;4591 5966;5967 5967 2 DKDFAIDIIK Unmodified 1176.639 0.63903946 1834 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 1 6 0 1 61.194 61.194 3 0.0059966 18511 TMT1-5 77.279 51.215 138.41 238.03 159.91 130.35 175.82 218.84 131 235 167 131 181 210 1 1 1 1 1 1 25288 2873 1834 2853 4592 5968 5968 1 DKEACVHK Unmodified 985.46511 0.46511462 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 5 0 1 29.022 29.022 4 0.01672 5723 TMT1-4 68.224 49.444 258.27 111.12 139.9 202.44 183.27 149.34 242 123 145 196 189 145 1 1 1 1 1 1 5802.2 2874 451 2854 4593 5969 5969 1 DKEWQEQFLIPNLALIDK Unmodified 2199.1576 0.15756986 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 1 7 0 1 79.543 79.543 4 0.017274 25125 TMT1-6 43.116 27.524 37.963 58.106 62.566 91.723 38.92 84.169 36 58 65 88 44 80 1 1 1 1 1 1 6936.4 2875 2855 2855 4594 5970 5970 1 DKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLR Unmodified 3681.8566 0.8566434 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 1 8 0 1 93.565 93.565 4 0.00011749 30391 TMT1-7 49.001 44.333 0 7.448 0 7.651 0 7.462 0 7 0 7 0 7 0 1 0 1 0 1 2537.7 2876 2782 2856 4595 5971 5971 1 DKGEYTLVVK Unmodified 1150.6234 0.6233894 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5 2.35 1 2 1 48.225 48.225 3;4 0.00015008 13394 TMT1-5 117.79 73.475 8331.3 9827.8 9444.2 6795.9 8681.4 10961 7863 9913 9592 6882 8958 10515 6 6 6 6 6 6 1118600 2877 831 2857 4596;4597;4598;4599 5972;5973;5974;5975;5976;5977 5974 6 DKHIEEVR Unmodified 1024.5302 0.53015772 752 P16949 STMN1 Stathmin yes yes 0 0 0 0 1 4 0 1 28.304 28.304 4 0.016909 5687 TMT1-3 67.993 36.919 69.122 56.096 57.104 43.501 63.125 83.479 65 58 58 44 65 80 1 1 1 1 1 1 6846.7 2878 752 2858 4600 5978 5978 1 DKLDGNELDLSLSDLNEVPVK Unmodified 2312.1747 0.17473607 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 1 5 0 1 71.785 71.785 4 2.7827E-07 22533 TMT1-4 83.936 55.758 130.24 190.14 130.31 155.88 132.26 143.33 123 189 138 152 138 138 1 1 1 1 1 1 19741 2879 2362 2859 4601 5979 5979 1 DKLDTLVDFPINDLDMSEFLINPNAGPCR Unmodified 3318.5901 0.59006372 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 1 7 0 1 91.437 91.437 4 0.00037474 29604 TMT1-6 47.745 36.222 0 0 0 7.53 6.4333 15.806 0 0 0 7 7 15 0 0 0 1 1 1 1893.2 2880 3012 2860 4602 5980 5980 1 DKLESEMEDAYHEHQANLLR Unmodified 2427.1125 0.11248694 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 1 4 0 1 52.959 52.959 5 0.00028359 15431 TMT1-3 60.329 52.24 146.08 173.21 187.99 120.77 131.09 224.38 138 175 189 123 138 214 1 1 1 1 1 1 26133 2881 857 2861 4603 5981 5981 1 DKLNNLVLFDK Unmodified 1317.7293 0.72925145 1450 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 1 8 0 1 62.651 62.651 3 0.00060257 18592 TMT1-7 96.591 64.094 238.77 275.08 212.33 252.45 316.87 273.45 225 277 223 248 323 265 1 1 1 1 1 1 21668 2882 1450 2862 4604 5982 5982 1 DKLPQPVQPDPVSHCK Unmodified 1843.9251 0.9250675 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 1 6 0 1 41.831 41.831 4 8.8123E-07 10879 TMT1-5 99.044 79.466 610.37 838.84 759.48 527.52 578.37 819.24 577 839 773 534 603 784 2 2 2 2 2 2 81700 2883 500 2863 4605 5983;5984 5983 2 DKLSELQLR Unmodified 1100.619 0.61897272 2552 Q9BVK6 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 0 0 0 0 1 6 0 1 48.259 48.259 3 0.0052753 13437 TMT1-5 81.799 13.174 616.9 888.11 522.7 407.76 664.11 736.84 582 882 552 413 677 709 1 1 1 1 1 1 51967 2884 2552 2864 4606 5985 5985 1 DKLSGEYEK Unmodified 1067.5135 0.5135046 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 1 5 0 1 39.279 39.279 3 0.01025 9751 TMT1-4 74.21 38.796 371.83 561.18 509.72 365.7 442.81 597.12 352 559 519 370 459 572 1 1 1 1 1 1 29725 2885 1009 2865 4607 5986 5986 1 DKLVGAIVYYDGQHNDAR Unmodified 2032.9967 0.99665254 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 1 6 0 1 52.518 52.518 4 0.00065459 15137 TMT1-5 63.69 54.643 146.52 173.33 114.97 156.67 139.04 158.06 138 174 123 152 145 152 1 1 1 1 1 1 16973 2886 1112 2866 4608 5987 5987 1 DKPHNIFK Unmodified 997.53451 0.53451481 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 1 8 0 1 37.471 37.471 4 0.018317 8616 TMT1-7 66.435 35.205 616.47 951.85 721.47 596.43 870.19 788.53 583 945 747 600 884 763 1 1 1 1 1 1 18095 2887 886 2867 4609 5988 5988 1 DKPHVNVGTIGHVDHGK Unmodified 1808.9282 0.92817905 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 1 6 0 1 35.565 35.565 5 0.0016739 8475 TMT1-5 59.579 45.987 215.56 344.87 267.98 199.26 353.43 345.96 204 342 276 203 358 334 2 2 2 2 2 2 15926 2888 1180 2868 4610 5989;5990 5990 2 DKPMYDEIFYTLSPVDGK Unmodified 2117.0027 0.0027087015 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 1 6.5 0.5 1 1 74.177 74.177 4 6.4998E-05 23061 TMT1-6 76.539 64.583 106.89 144.96 126.57 133.32 123.55 213.94 101 145 131 131 131 204 2 2 2 2 2 2 23107 2889 2802 2869 4611;4612 5991;5992 5992 2 DKPVYYALEGSVAIAGAVIR Unmodified 2091.1364 0.13644049 991 P32189-1;P32189-4;P32189-2;P32189;Q14409 GK;GK3P Glycerol kinase;Putative glycerol kinase 3 yes no 0 0 0 0 1 8 0 1 77.854 77.854 3 6.7931E-05 24550 TMT1-7 66.644 48.727 38.223 51.274 24.66 77.412 48.226 45.528 36 51 29 73 51 44 1 1 1 1 1 1 5169.5 2890 991 2870 4613 5993 5993 1 DKQPNAQPQYLHGSK Unmodified 1709.8485 0.84853174 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 1 6 0 1 33.967 33.967 4 1.721E-10 7787 TMT1-5 119.56 106.13 177.64 139.92 142.45 115.52 147.46 181.28 167 145 145 116 152 174 1 1 1 1 1 1 12774 2891 2079 2871 4614 5994 5994 1 DKQPYEQK Unmodified 1034.5033 0.50327426 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 1 5 0 1 32.352 32.352 3 0.00215 6972 TMT1-4 108.57 65.487 1268.6 1939.9 1361.4 1295.2 1786.2 1262.3 1199 1925 1425 1290 1806 1232 2 2 2 2 2 2 143760 2892 900 2872 4615 5995;5996 5995 2 DKTIIMWK Unmodified 1033.563 0.56303775 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 1 9 0 1 55.895 55.895 3 0.0053817 14136 TMT1-8 72.79 40.375 160.9 263.34 146.45 225.78 200.37 320.48 152 260 160 218 212 306 1 1 1 1 1 1 13315 2893 1478 2873 4616 5997 5997 1 DKTYSYLNK Unmodified 1130.5608 0.56078914 1401 P61916-2;P61916 NPC2 Epididymal secretory protein E1 yes no 0 0 0 0 1 7 0 1 43.626 43.626 3 0.0081347 10985 TMT1-6 76.655 27.155 176.65 273.17 195.21 160.71 134.92 303.16 167 271 203 160 146 288 1 1 1 1 1 1 15077 2894 1401 2874 4617 5998 5998 1 DKVQAGDVITIDK Unmodified 1400.7511 0.75110911 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 1 5 0 1 50.72 50.72 3 3.9297E-06 14303 TMT1-4 113.69 59.719 184.04 253.97 231.8 165.72 159.24 227.84 174 254 236 167 167 218 1 1 1 1 1 1 12212 2895 2949 2875 4618 5999 5999 1 DKVTLVVGASQDIIPQLK Unmodified 1923.1041 0.10407773 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 1 8 0 1 71.115 71.115 4 0.0012059 21890 TMT1-7 59.512 41.811 92.124 139.15 88.225 104.83 74.435 128.99 87 138 94 102 80 123 1 1 1 1 1 1 10172 2896 837 2876 4619 6000 6000 1 DKVVDLLYWR Unmodified 1305.7081 0.70812208 2709 Q9NQC3-3 RTN4 Reticulon-4 yes yes 0 0 0 0 1 8 0 1 66.425 66.425 3 0.01123 20037 TMT1-7 69.554 45.949 176.62 249.33 221.3 141.41 206.56 253.14 167 249 225 145 212 243 1 1 1 1 1 1 37199 2897 2709 2877 4620 6001 6001 1 DKWLAPDGLIFPDR Unmodified 1641.8515 0.85149185 2497 Q99873-2;Q99873-3;Q99873 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 1 7 0 1 68.204 68.204 3 0.00011925 20700 TMT1-6 88.427 70.938 130.49 135.76 136 101.28 111.48 151.39 123 138 138 102 116 145 1 1 1 1 1 1 16338 2898 2497 2878 4621 6002 6002 1 DKWSPALQIR Unmodified 1212.6615 0.66150624 1377 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 1 8 0 1 50.091 50.091 3 0.0075663 13651 TMT1-7 74.962 68.721 319.53 747.03 487 412.81 508.99 739.14 304 730 510 413 529 707 1 1 1 1 1 1 48279 2899 1377 2879 4622 6003 6003 1 DKYGPPVR Unmodified 930.49232 0.49231565 1687 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 1 6 0 1 33.436 33.436 3 0.011174 7564 TMT1-5 80.219 54.66 99.409 176.86 94.293 111.32 117.03 189.61 94 174 102 109 123 181 1 1 1 1 1 1 7681.3 2900 1687 2880 4623 6004 6004 1 DKYPNLQVIGGNVVTAAQAK Unmodified 2085.1219 0.12185306 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 1 8 0 1 61.251 61.251 3 6.3402E-07 18058 TMT1-7 87.208 69.72 30.566 58.938 42.661 28.21 50.232 52.933 29 58 44 29 51 51 1 1 1 1 1 1 9442.9 2901 667 2881 4624 6005 6005 1 DLAACIK Unmodified 789.40547 0.40547447 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 6 0 1 47.704 47.704 2 0.017997 13215 TMT1-5 99.171 66.05 316.13 481.96 381.45 273.59 458.65 563.62 299 479 392 279 469 541 1 1 1 1 1 1 47742 2902 307 2882 4625 6006 6006 1 DLAAFDK Unmodified 778.38612 0.38611924 608 P09960;P09960-4 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 5 0 1 52.75 52.75 2 0.010017 15045 TMT1-4 109.86 78.49 423.2 536.58 373.8 432.37 466.86 599.63 399 537 395 424 485 575 2 2 2 2 2 2 68035 2903 608 2883 4626 6007;6008 6007 2 DLAALEDK Unmodified 873.44436 0.4443624 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 53.512 53.512 2 0.031844 15702 TMT1-3 80.455 36.008 122.45 223.32 149.79 209.13 203.12 262.84 116 220 160 203 212 252 1 1 1 1 1 1 35248 2904 1737 2884 4627 6009 6009 1 DLAALGDK Unmodified 801.42323 0.42323303 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 51.057 51.057 2 0.011795 14398 TMT1-4 97.431 24.182 145.26 252.95 258.58 202.02 236.45 185.13 138 251 262 203 241 180 1 1 1 1 1 1 15210 2905 1737 2885 4628 6010 6010 1 DLAALGDKVNSLGETAER Unmodified 1857.9432 0.94321999 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 6 0 1 61.603 61.603 3 0.0053673 18758 TMT1-5 52.866 35.987 122.82 150.95 149.32 122.78 146.94 186.62 116 152 152 123 152 179 1 1 1 1 1 1 10563 2906 1737 2886 4629 6011 6011 1 DLAALHEICVAHSDELR Unmodified 1947.9473 0.94725951 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 4 0 1 51.901 51.901 4 9.4084E-06 14989 TMT1-3 84.035 67.853 77.634 62.863 63.564 58.421 62.988 67.493 73 65 65 58 65 65 1 1 1 1 1 1 13778 2907 822 2887 4630 6012 6012 1 DLADELALVDVIEDK Unmodified 1656.8458 0.84579735 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 3.17 0.687 1 3 2 87.819 87.819 2;3 5.6652E-28 29442 TMT1-2 191.26 158.31 331.68 561.37 405.63 354.13 458.38 341.9 314 555 421 354 465 333 9 9 8 9 9 9 121130 2908 385 2888 4631;4632;4633;4634;4635;4636 6013;6014;6015;6016;6017;6018;6019;6020;6021 6017 9 DLADELALVDVIEDKLK Unmodified 1898.0248 0.024824352 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 5 0 2 91.699 91.699 3;4 6.5648E-33 30267 TMT1-4 179.9 151.69 230.42 259.04 186.87 190.78 189.48 197.13 217 261 196 188 196 190 3 3 3 3 3 3 30206 2909 385 2889 4637;4638 6022;6023;6024 6023 3 DLADVAAR Unmodified 829.42938 0.42938104 2546 Q9BV20-2;Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 0 3 0 1 41.057 41.057 2 0.00096833 11728 TMT1-2 98.629 59.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2910 2546 2890 4639 6025 6025 1 DLAEDAPWK Unmodified 1043.4924 0.49237523 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 4.5 0.5 1 1 57.159 57.159 3 0.00037913 17092 TMT1-3 109.48 100.52 958.34 1018.3 1095.4 842.59 1416.5 968.02 904 1035 1108 855 1423 946 2 2 2 2 2 2 118850 2911 270;831;1771 2891 4640;4641 6026;6027 6026 2 DLAEDAPWKK Unmodified 1171.5873 0.58733824 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 1 6 0 1 51.547 51.547 3 0.0024657 14823 TMT1-5 87.363 50.516 1539.3 1879.4 1918.5 1396.7 1834.6 1879.2 1454 1894 1942 1414 1877 1812 2 2 2 2 2 2 217150 2912 270;831;1771 2892 4642 6028;6029 6029 2 DLAEITTLDR Unmodified 1145.5928 0.59281755 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 3 0.816 1 1 1 58.435 58.435 2 0.00016193 18538 TMT1-2 132.88 83.529 231.15 265.57 238.99 250.7 267.08 294.06 218 268 247 247 276 283 4 4 4 4 4 4 89936 2913 2521 2893 4643;4644;4645 6030;6031;6032;6033 6031 4 DLAGCIHGLSNVK Unmodified 1382.6976 0.69763375 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 8 1 1 1 51.039 51.039 3 6.5918E-18 13935 TMT1-6 179.41 161 979.02 1666.2 1398.4 1060.6 1359.4 1667.9 928 1650 1433 1070 1401 1601 2 2 2 2 2 2 216010 2914 1164 2894 4646;4647 6034;6035 6034 2 DLAGEVEK Unmodified 859.42871 0.42871234 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 3 0 2 44.649 44.649 2;3 0.0056833 13125 TMT1-2 82.279 17.521 253.22 303.75 284.62 216.81 239.52 258.6 239 306 290 218 247 249 2 2 2 2 2 2 25281 2915 199 2895 4648;4649 6036;6037 6036 2 DLAGIIAIQR Unmodified 1068.6291 0.62914348 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 1 62.165 62.165 2 0.0033837 18278 TMT1-6 96.331 49.905 61.398 72.205 79.357 57.494 62.225 90.966 58 73 80 58 65 87 1 1 1 1 1 1 13906 2916 651 2896 4650 6038 6038 1 DLAGSIIGK Unmodified 872.49673 0.49673232 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 7 0 1 56.867 56.867 2 0.00011577 16199 TMT1-6 149.94 55.634 765.87 1401.6 838.25 801.34 763.22 1344.8 725 1379 889 792 809 1282 2 2 2 2 2 2 251190 2917 1409;1410 2897 4651 6039;6040 6039 2 DLALAIR Unmodified 770.46504 0.46503826 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 6 0 1 51.673 51.673 2 0.0078611 14760 TMT1-5 122.78 0 283.99 390.22 270.64 240.63 295.45 364.67 268 389 283 240 305 350 2 2 2 2 2 2 77820 2918 1066 2898 4652 6041;6042 6041 2 DLALVNDQLLGFVR Unmodified 1571.8671 0.86714192 1917 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 0 0 7 0 1 79.919 79.919 3 0.00011617 25268 TMT1-6 84.566 50.68 23.254 36.26 28.449 14.289 21.828 15.367 22 36 29 15 22 15 1 1 1 1 1 1 4145 2919 1917 2899 4653 6043 6043 1 DLAQCVNEVKR Unmodified 1330.6663 0.66633362 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 1 6 0 1 44.237 44.237 3 0.00010823 11866 TMT1-5 77.644 35.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2920 722 2900 4654 6044 6044 1 DLASAILDLPVLEHLFAQHR Unmodified 2257.2219 0.22190145 1265 P52333;P52333-2;P52333-4 JAK3 Tyrosine-protein kinase JAK3 yes no 0 0 0 0 0 8 0 1 88.386 88.386 4 5.6805E-05 28510 TMT1-7 65.808 57.207 23.356 13.88 30.185 5.4386 21.978 22.825 22 15 29 7 22 22 1 1 1 1 1 1 3946 2921 1265 2901 4655 6045 6045 1 DLASGLIGLLLICK Unmodified 1484.8636 0.86363645 31 CON__Q28107 yes yes 0 0 0 0 0 9 0 1 96.384 96.384 3 1.6858E-12 29782 TMT1-8 126.83 0 184.38 223.61 200.73 126.97 168.08 265.97 174 225 204 130 175 254 2 2 2 2 2 2 38258 + 2922 31 2902 4656 6046;6047 6047 2 DLASIAR Unmodified 744.413 0.41300269 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 4.25 1.92 1 2 1 42.622 42.622 2 0.00084273 10156 TMT 1-phospho 113.1 16.034 6041.8 8732.9 6714.5 6023.4 8020.8 8874.8 5709 8696 6966 6015 8224 8540 5 5 5 5 5 5 1054600 + 2923 32;554 2903 4657;4658;4659;4660 6048;6049;6050;6051;6052;6053 6048 6 DLASVNNLLK Unmodified 1085.6081 0.60807369 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 62.774 62.774 2 1.941E-13 18568 TMT1-6 154.85 86.467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2924 1737 2904 4661 6054 6054 1 DLASVQALLR Unmodified 1084.6241 0.6240581 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 7.5 0.5 1 1 66.587 66.587 2 0.00053057 20068 TMT1-6 114.51 65.072 215.03 267.69 241.05 203.45 216.15 286.98 203 269 247 203 225 275 2 2 2 2 2 2 28382 2925 1737 2905 4662;4663 6055;6056 6055 2 DLATALEQLLQAYPR Unmodified 1700.9097 0.90973501 1329 P55957;P55957-2;P55957-4 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 8.33 0.471 2 1 95.752 95.752 2;3 3.3503E-17 31299 TMT1-7 144.27 109.23 65.838 44.263 78.118 73.867 67.33 72.699 62 47 78 73 70 70 4 4 4 4 4 4 25183 2926 1329 2906 4664;4665;4666 6057;6058;6059;6060 6058 4 DLATVYVDVLK Unmodified 1234.6809 0.68090428 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 6 0 1 72.94 72.94 2 0.0011034 23201 TMT1-5 99.973 70.664 61.255 103.11 77.177 64.838 85.435 75.38 58 102 80 65 87 73 1 1 1 1 1 1 10268 2927 431 2907 4667 6061 6061 1 DLCGIVASK Unmodified 961.49027 0.49026674 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 6.5 0.5 1 1 53.273 53.273 2 0.0011314 14801 TMT1-6 123.86 76.793 493.6 928.31 651.91 479.01 534.4 733.08 468 914 676 483 556 702 3 3 3 3 3 3 72600 2928 681 2908 4668;4669 6062;6063;6064 6064 3 DLCQVSHPHTK Unmodified 1320.6245 0.62446881 1646 Q12802-4;Q12802;Q12802-2 AKAP13 A-kinase anchor protein 13 yes no 0 0 0 0 0 6 0 1 30.465 30.465 4 0.041197 6437 TMT1-5 41.54 25.287 38.158 43.538 42.157 59.402 78.649 67.046 36 44 44 58 80 65 1 1 1 1 1 1 2458.8 2929 1646 2909 4670 6065 6065 1 DLDADREVTFLEASR Unmodified 1735.8377 0.83769228 809 P20338 RAB4A Ras-related protein Rab-4A yes yes 0 0 0 0 1 2 0 1 57.226 57.226 3 0.0050999 17738 TMT1-1 62.357 32.299 54.227 57.477 34.622 13.659 35.746 37.356 51 58 36 15 36 36 1 1 1 1 1 1 8132.3 2930 809 2910 4671 6066 6066 1 DLDAPDDVDFF Unmodified 1267.5245 0.52446322 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 0 2 0 1 83.253 83.253 2 8.1274E-07 27045 TMT1-1 145.34 133.29 27.618 25.314 29.146 22.867 28.432 30.103 26 26 29 23 29 29 2 3 2 3 2 2 7239 2931 2568 2911 4672 6067;6068;6069 6068 3 DLDDFQSWLSR Unmodified 1380.631 0.63099397 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 74.457 74.457 2 1.2824E-16 23769 TMT1-5 184.27 161.04 92.559 92.864 54.464 50.597 101.03 97.321 87 94 58 51 102 94 1 1 1 1 1 1 19929 2932 1546 2912 4673 6070 6070 1 DLDELSR Unmodified 846.40831 0.40831125 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 2 0 1 43.104 43.104 2 0.0035209 12190 TMT1-1 86.472 29.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2933 1109 2913 4674 6071 6071 1 DLDFANDASK Unmodified 1094.488 0.48801813 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 4 0 1 52.11 52.11 2 8.2462E-05 15109 TMT1-3 96.229 58.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2934 1785 2914 4675 6072 6072 1 DLDGFRK Unmodified 849.43447 0.43446642 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 1 6 0 1 41.495 41.495 3 0.031185 10730 TMT1-5 68.422 39.909 199.57 359.21 238.76 230.43 299.8 343.23 189 354 251 229 308 330 1 1 1 1 1 1 31910 2935 1910 2915 4676 6073 6073 1 DLDIFDR Unmodified 892.42905 0.42904669 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 2 0 1 61.073 61.073 2 0.015119 19231 TMT1-1 101.41 19.026 76.552 177.5 148.24 116.39 83.064 75.448 73 174 152 116 87 73 1 1 1 1 1 1 17954 2936 1759 2916 4677 6074 6074 1 DLDPNEVWEIVGELGDGAFGK Unmodified 2259.0695 0.069542713 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5.33 0.471 2 1 102.95 102.95 3;4 1.3729E-05 33374 TMT1-4 67.251 56.001 27.584 37.035 28.295 45.875 28.215 36.505 26 37 30 44 30 35 3 4 4 5 4 4 4573.9 2937 325 2917 4678;4679;4680 6075;6076;6077;6078;6079 6075 5 DLDQASLAAVSQQLAPR Unmodified 1781.9272 0.92717599 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 2.22 1 1 2 1 1 66.867 66.867 3 2.5788E-62 20549 TMT1-4 225.13 184.89 969.53 1294.4 1145.5 898.06 1155.5 1581 916 1296 1172 904 1196 1514 12 12 12 12 12 12 670300 2938 3010 2918 4681;4682;4683;4684;4685;4686 6080;6081;6082;6083;6084;6085;6086;6087;6088;6089;6090;6091 6083 12 DLDSLHR Unmodified 854.42463 0.42463001 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 6 0 1 33.168 33.168 3 0.013944 7453 TMT1-5 75.213 39.333 22.991 74.383 40.349 35.887 56.161 52.763 22 72 43 36 57 51 1 1 1 1 1 1 3070.5 2939 2205 2919 4687 6092 6092 1 DLDTGEEVTR Unmodified 1133.52 0.52004654 1760 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 0 2 0 1 38.53 38.53 2 0.012201 10397 TMT1-1 81.099 43.287 30.689 44.17 34.522 36.476 43.329 29.678 29 44 36 36 44 29 1 1 1 1 1 1 3807.7 2940 1760 2920 4688 6093 6093 1 DLDVAILVGSMPR Unmodified 1384.7384 0.73843593 1074 P40925-3;P40925 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 6.5 0.5 1 1 75.993 75.993 2 1.6996E-07 23799 TMT1-6 117.09 82.559 46.597 65.215 48.037 67.286 47.629 76.459 44 65 51 65 51 73 2 2 2 2 2 2 12227 2941 1074 2921 4689;4690 6094;6095 6095 2 DLDVSIK Unmodified 788.42798 0.42798405 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 5 0 1 52.464 52.464 2 0.0027186 14976 TMT1-4 89.296 15.679 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2942 199 2922 4691 6096 6096 1 DLDVVVVSVAGAFR Unmodified 1445.7878 0.78782897 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 7 0 1 81.943 81.943 2 0.00028176 26060 TMT1-6 89.356 58.283 46.827 34.555 35.354 28.931 35.043 37.376 44 36 36 29 36 36 1 1 1 1 1 1 7731.5 2943 2007 2923 4692 6097 6097 1 DLDYYGTLLK Unmodified 1199.6074 0.60740498 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 6 0 1 67.352 67.352 2 0.00084083 20990 TMT1-5 105.2 79.536 53.875 95.351 61.743 58.234 78.702 67.044 51 94 65 58 80 65 1 1 1 1 1 1 8006.7 2944 1637 2924 4693 6098 6098 1 DLEADIIGDTSGHFQK Unmodified 1744.8268 0.82679325 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 6 0 1 60.449 60.449 3 4.452E-12 18259 TMT1-5 126.77 117.19 99.84 123.01 67.463 81.683 92.283 66.657 94 123 73 80 94 65 1 1 1 1 1 1 11841 2945 555 2925 4694 6099 6099 1 DLEAEHVEVEDTTLNR Unmodified 1868.8752 0.8752 2637 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 0 0 2 0 1 47.162 47.162 3 1.6693E-16 13760 TMT1-1 139.94 119.83 93.685 92.94 45.417 83.433 69.115 99.298 88 94 51 80 73 95 2 2 2 2 2 2 51465 2946 2637 2926 4695 6100;6101 6100 2 DLEAHIDSANK Unmodified 1211.5782 0.57823012 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.71 1.67 1 1 1 1 2 1 40.334 40.334 2;3;4 2.4704E-32 10416 TMT1-3 207.44 165.9 4632.6 6914.8 6143.3 4547.3 5147.7 6701.1 4384 6889 6270 4584 5341 6424 8 8 8 8 8 8 921610 2947 1019 2927 4696;4697;4698;4699;4700;4701;4702 6102;6103;6104;6105;6106;6107;6108;6109 6106 8 DLEALMFDR Unmodified 1108.5223 0.52229515 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 4.5 0.5 1 1 69.34 69.34 2 0.00071181 21837 TMT1-3 88.948 52.247 46.332 119.52 46.536 27.86 56.515 83.667 44 116 51 29 58 80 1 1 1 1 1 1 21940 2948 1043 2928 4703;4704 6110;6111 6110 2 DLECVTNLQEVAR Unmodified 1545.7457 0.74570615 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 4 0 1 57.34 57.34 2 6.3522E-16 17165 TMT1-3 170.68 134.16 53.906 56.584 89.341 25.287 57.696 52.72 51 58 87 29 58 51 1 1 1 1 1 1 13218 2949 634 2929 4705 6112 6112 1 DLEDETLWVEER Unmodified 1532.6995 0.69946747 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 2 0 1 64.645 64.645 3 0.0015585 20595 TMT1-1 75.739 55.9 15.82 29.433 21.309 14.577 29.144 15.158 15 29 22 15 29 15 1 1 1 1 1 1 7755.7 2950 651 2930 4706 6113 6113 1 DLEEDHACIPIKK Unmodified 1566.7712 0.77119262 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 5 0 1 45.897 45.897 4 5.4538E-11 12342 TMT1-4 133.71 90.329 285.29 650.17 372.64 393.89 540.99 502.64 271 635 398 390 551 486 1 1 1 1 1 1 55863 2951 685 2931 4707 6114 6114 1 DLEEFFSTVGK Unmodified 1270.6081 0.60813326 1779 Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 0 0 0 6 0 1 76.369 76.369 2 7.8062E-06 24529 TMT1-5 126.71 87.685 77.489 93.76 61.693 58.824 47.505 91.386 73 94 65 58 51 87 1 1 1 1 1 1 9656.6 2952 1779 2932 4708 6115 6115 1 DLEGLHR Unmodified 838.42972 0.42971539 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 3 0 1 33.017 33.017 3 0.0018608 8529 TMT1-2 111.65 59.96 184.48 196.89 207.4 134.54 209.13 217.89 174 200 209 138 213 210 1 1 1 1 1 1 16624 2953 1724 2933 4709 6116 6116 1 DLEGLSQR Unmodified 916.46141 0.46140945 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.17 1.57 1 1 2 1 1 41.16 41.16 2;3 2.0364E-12 10706 TMT1-3 186.11 74.379 3412.5 4663.6 3921.1 3194.7 3972.3 4815.8 3224 4661 4030 3205 4096 4624 6 6 6 6 6 6 1651800 2954 1019 2934 4710;4711;4712;4713;4714;4715 6117;6118;6119;6120;6121;6122;6123 6122 7 DLEHSLQMEAYER Unmodified 1619.725 0.72497071 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 3 0 1 50.561 50.561 3 0.0025215 15504 TMT1-2 66.797 45.263 54.245 33.783 51.642 27.821 42.408 68.08 51 36 51 29 44 65 1 1 1 1 1 1 8125.1 2955 3034 2935 4716 6124 6124 1 DLEIQDYQESGATLIR Unmodified 1849.9058 0.90577185 2665 Q9H9Q4;Q9H9Q4-2 NHEJ1 Non-homologous end-joining factor 1 yes no 0 0 0 0 0 3 0 1 63.234 63.234 3 0.0023113 20467 TMT1-2 60.949 53.224 30.841 20.849 28.659 29.473 27.433 45.055 29 22 29 29 29 43 1 1 1 1 1 1 6999 2956 2665 2936 4717 6125 6125 1 DLEKPFLLPVEAVYSVPGR Unmodified 2128.1568 0.15684158 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 1 7.33 0.471 2 1 76.048 76.048 3;4 2.2386E-07 23785 TMT1-6 90.316 72.616 200.35 277.2 176.87 224.1 192.88 297.24 189 276 189 218 204 284 4 4 4 4 4 4 91247 2957 1180 2937 4718;4719;4720 6126;6127;6128;6129 6128 4 DLELLIQTATR Unmodified 1271.7085 0.70851601 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 7 0 1 73.407 73.407 2 0.0081304 22752 TMT1-6 56.359 26.375 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2958 1572 2938 4721 6130 6130 1 DLELQAASSR Unmodified 1088.5462 0.54620171 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 2.5 0.5 1 1 42.876 42.876 2 0.00049525 12408 TMT1-2 115.57 58.853 176.61 262.25 212.14 159.52 144.36 243.19 167 261 218 160 153 232 2 2 2 2 2 2 50141 2959 2066 2939 4722;4723 6131;6132 6132 2 DLENFLK Unmodified 877.45453 0.45453316 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 6 0 1 62.892 62.892 2 0.021437 19214 TMT1-5 96.492 7.3494 169.74 206.28 151.19 195.31 120.04 233.23 160 207 160 189 131 222 1 1 1 1 1 1 12329 2960 1138 2940 4724 6133 6133 1 DLEPLKR Unmodified 869.49707 0.49706667 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 1 5 0 1 39.662 39.662 3 0.027422 9919 TMT1-4 71.378 32.542 184.47 168.82 231.87 133.15 205.29 240.39 174 174 230 138 210 231 1 1 1 1 1 1 11075 2961 1081 2941 4725 6134 6134 1 DLEQPSQAAGINLEIIR Unmodified 1865.9847 0.98469087 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 4.5 0.5 1 1 66.276 66.276 3 3.0312E-14 20646 TMT1-3 126.42 96.736 69.183 63.819 40.419 67.597 55.237 67.714 65 65 44 65 58 65 1 1 1 1 1 1 33251 2962 1916 2942 4726;4727 6135;6136 6135 2 DLETSCSDIR Unmodified 1194.5187 0.51866633 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 2 0 1 39.061 39.061 2 7.1942E-05 10597 TMT1-1 142.56 93.204 77.758 55.653 48.816 59.153 70.781 83.26 73 58 51 58 73 80 1 1 1 1 1 1 8724.5 2963 1762 2943 4728 6137 6137 1 DLEVVAATPTSLLISWDAPAVTVR Unmodified 2523.3585 0.35845451 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 89.464 89.464 4 0.0020661 28941 TMT1-6 41.491 25.369 32.032 4.9147 22.336 22.715 0 15.99 30 7 22 22 0 15 1 1 1 1 0 1 4334.8 2964 442 2944 4729 6138 6138 1 DLEVVEGSAAR Unmodified 1144.5724 0.57241646 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5;Q15746-10;Q15746-8 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 2 0 1 45.716 45.716 2 1.6676E-23 13217 TMT1-1 200.11 137.14 296.44 276.81 258.12 162.95 281.31 332.03 279 283 262 168 287 319 1 1 1 1 1 1 50423 2965 1870 2945 4730 6139 6139 1 DLFEDELVPLFEK Unmodified 1592.7974 0.7973906 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 4.33 0.471 2 1 87.469 87.469 2;3 3.0708E-05 28876 TMT1-3 101.39 81.65 239.07 365.67 265.4 202.06 314.32 323.62 226 363 275 204 320 312 5 5 5 4 5 5 54693 2966 226;227 2946 4731;4732;4733 6140;6141;6142;6143;6144 6140 5 DLFLQGAYDTVR Unmodified 1396.6987 0.69867961 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 6 0 1 63.836 63.836 2 0.00081767 19612 TMT1-5 94.547 56.819 85.044 85.813 61.059 82.919 46.91 76.479 80 87 65 80 51 73 1 1 1 1 1 1 6804.5 2967 2866 2947 4734 6145 6145 1 DLFNAIATGK Unmodified 1048.5553 0.55530983 457 P04040 CAT Catalase yes yes 0 0 0 0 0 8 0 1 64.671 64.671 2 0.013197 19354 TMT1-7 79.659 39.657 539.94 790.8 735.14 563.76 878.69 858.64 511 789 749 571 893 829 2 2 2 2 2 2 41074 2968 457 2948 4735 6146;6147 6146 2 DLFPYEESK Unmodified 1126.5183 0.51825563 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 0 4.5 0.5 1 1 57.824 57.824 2;3 0.0031018 17352 TMT1-3 80.688 15.341 138.61 196.51 160.98 162.11 168.59 204.13 131 196 167 160 175 196 2 2 2 2 2 2 27450 2969 1257 2949 4736;4737 6148;6149 6148 2 DLFPYEESKEK Unmodified 1383.6558 0.65581174 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 1 5 0 1 51.963 51.963 3 0.014152 14772 TMT1-4 64.121 31.387 302.11 544.26 339.37 310.07 279.35 618.84 286 536 358 307 301 588 1 1 1 1 1 1 29965 2970 1257 2950 4738 6150 6150 1 DLFQVIYNVK Unmodified 1237.6707 0.67067394 1528 P98082-2;P98082-3;P98082 DAB2 Disabled homolog 2 yes no 0 0 0 0 0 9 0 1 76.678 76.678 3 0.0011236 22271 TMT1-8 85.355 54.618 54.209 64.981 31.343 77.152 40.909 45.737 51 65 36 73 44 44 1 1 1 1 1 1 7504.3 2971 1528 2951 4739 6151 6151 1 DLFTCTIK Unmodified 996.49502 0.49501776 2116 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 0 0 0 0 0 7 0 1 58.648 58.648 2 7.9509E-09 16932 TMT1-6 179.21 156.47 146.22 188.69 152.43 193.87 192.83 156.53 138 189 160 189 198 152 1 1 1 1 1 1 20024 2972 2116 2952 4740 6152 6152 1 DLFTESWDTQK Unmodified 1368.6198 0.61976058 1872 Q15762 CD226 CD226 antigen yes yes 0 0 0 0 0 5 0 1 65.066 65.066 3 4.522E-09 19873 TMT1-4 158.41 126.77 184.65 216.82 160.62 137.77 185.69 165.26 174 218 167 138 189 160 2 2 2 2 2 2 24583 2973 1872 2953 4741 6153;6154 6153 2 DLFVANVQSFPPAPEDK Unmodified 1872.9258 0.92577901 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 0 6 0 1 69.429 69.429 3 0.0011667 22056 TMT1-5 62.94 35.912 23.122 44.528 43.571 28.022 57.314 60.193 22 44 44 29 58 58 1 1 1 1 1 1 7460.8 2974 1179 2954 4742 6155 6155 1 DLGEELEALK Unmodified 1115.571 0.57101948 1019;1029 P35579;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 0 0 0 3 0.707 1 2 1 68.046 68.046 2;3 6.8025E-05 21284 TMT1-3 121.8 42.858 999.59 1141.1 1091.2 888.3 1149.3 980.97 943 1153 1113 892 1170 951 6 6 6 6 6 6 180330 2975 1019;1029 2955 4743;4744;4745;4746 6156;6157;6158;6159;6160;6161 6161 6 DLGEELEALKTELEDTLDSTAAQQELR Unmodified 3016.4724 0.47243423 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 6.14 1.25 1 1 2 2 1 99.802 99.802 3;4 5.5242E-44 33017 TMT1-4 145.14 130.73 284.59 362.95 372.24 304.08 319.32 376.78 269 365 378 304 331 362 10 10 10 10 10 10 126740 2976 1019 2956 4747;4748;4749;4750;4751;4752;4753 6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172 6166 11 DLGEENFK Unmodified 950.43453 0.434526 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 4 0 1 48.18 48.18 3 0.0028869 13531 TMT1-3 93.374 71.867 114.97 190.45 172.98 73.75 179.74 180.35 109 189 174 80 181 174 1 1 1 1 1 1 14142 + 2977 28 2957 4754 6173 6173 1 DLGFFGIYK Unmodified 1058.5437 0.54368251 2886 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 0 9 0 1 73.68 73.68 2 0.0020991 21124 TMT1-8 93.162 46.737 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2978 2886 2958 4755 6174 6174 1 DLGGAAEGGAR Unmodified 972.46247 0.46247208 2110 Q86UT6 NLRX1 NLR family member X1 yes yes 0 0 0 0 0 2 0 1 31.923 31.923 2 0.015049 7770 TMT1-1 75.197 39.948 54.28 26.325 52.078 28.071 27.754 37.584 51 29 51 29 29 36 1 1 1 1 1 1 2638.3 2979 2110 2959 4756 6175 6175 1 DLGGIVLANACGPCIGQWDR Unmodified 2171.0252 0.025192253 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 7 0 1 73.756 73.756 3 1.0106E-13 22883 TMT1-6 112.44 101.85 30.762 28.183 35.838 28.468 58.099 36.718 29 29 36 29 58 36 1 1 1 1 1 1 21870 2980 2492 2960 4757 6176 6176 1 DLGIFGLYK Unmodified 1024.5593 0.55933258 298 O75746-2;O75746 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 0 0 8 0 1 73.721 73.721 2 0.0076227 22884 TMT1-7 92.439 50.46 61.437 94.98 53.412 74.884 91.532 97.592 58 94 58 73 94 94 1 1 1 1 1 1 4975.2 2981 298 2961 4758 6177 6177 1 DLGIFWLNAAETWVDISSNTAGK Unmodified 2507.2333 0.233254 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 8.67 0.471 1 2 105.56 105.56 3;4 6.66E-26 32994 TMT1-8 119.18 100.88 60.476 69.46 56.344 43.531 63.93 60.004 57 70 58 44 65 58 4 4 4 4 4 4 18297 2982 1792 2962 4759;4760;4761 6178;6179;6180;6181 6180 4 DLGIVVEGFMK Unmodified 1206.6318 0.63184559 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 7 0 2 77.636 77.636 2;3 5.2676E-05 24332 TMT1-6 104.82 78.705 68.631 94.664 106.95 111.5 67.312 114.27 65 95 109 109 73 109 2 2 2 2 2 2 12454 2983 214 2963 4762;4763 6182;6183 6182 2 DLGLSESGEDVNAAILDESGK Unmodified 2117.9964 0.99643735 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3 0 1 68.56 68.56 4 0.00028838 22578 TMT1-2 54.834 42.157 30.762 28.183 35.819 28.893 35.558 22.437 29 29 36 29 36 22 1 1 1 1 1 1 3175.9 2984 686 2964 4764 6184 6184 1 DLGLSESGEDVNAAILDESGKK Unmodified 2246.0914 0.091400367 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 4 0 3 62.815 62.815 3;4;5 1.7449E-37 19369 TMT1-3 153.25 133.43 501.57 728.14 564.63 472.31 528.14 710.88 474 725 584 472 549 681 4 4 4 4 4 4 92133 2985 686 2965 4765;4766;4767 6185;6186;6187;6188 6186 4 DLGPNSSK Unmodified 816.39775 0.39774656 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5 0 1 35.088 35.088 2 0.015897 8144 TMT1-4 92.051 32.806 123.05 128.93 128.88 101.25 135.58 119.79 116 131 131 102 138 116 1 1 1 1 1 1 63508 2986 536 2966 4768 6189 6189 1 DLGTESQIFISR Unmodified 1364.6936 0.69359423 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 5 0 1 58.221 58.221 2 5.7569E-34 17181 TMT1-4 215.04 184.3 268.11 506.52 315.17 300.62 277.47 412.09 254 498 333 297 292 394 2 2 2 2 2 2 84024 2987 1217 2967 4769 6190;6191 6190 2 DLGYIYFYQR Unmodified 1336.6452 0.64518747 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 66.118 66.118 2 1.1924E-06 19872 TMT1-6 163.15 132.65 46.499 96.242 38.198 76.358 61.357 90.991 44 94 44 73 65 87 1 1 1 1 1 1 12041 2988 1122 2968 4770 6192 6192 1 DLGYLQQWLK Unmodified 1262.6659 0.66592292 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8 0 1 77.266 77.266 3 0.0037453 24297 TMT1-7 76.228 47.27 37.972 81.876 40.914 35.691 64.803 45.055 36 80 44 36 65 44 1 1 1 1 1 1 6519.9 2989 2061 2969 4771 6193 6193 1 DLHLLEEIALTLR Unmodified 1534.8719 0.87189295 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 6 0 1 84.702 84.702 3 0.00041449 27745 TMT1-5 80.312 63.37 31.09 5.3516 0 16.271 6.5746 0 29 7 0 15 7 0 1 1 0 1 1 0 2548.7 2990 1138 2970 4772 6194 6194 1 DLHPDLEGQLK Unmodified 1263.6459 0.64591575 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 4 0 1 48.318 48.318 3 4.3439E-09 13612 TMT1-3 120.86 99.286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2991 2789 2971 4773 6195 6195 1 DLHPLFDETFEFLVPAEPCR Unmodified 2431.1518 0.15183255 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5.33 0.471 2 1 84.29 84.29 3;4 0.00028434 27408 TMT1-4 58.997 48.621 62.424 79.558 80.928 36.51 72.079 75.761 59 80 81 37 73 73 3 3 3 2 3 3 21220 2992 2066 2972 4774;4775;4776 6196;6197;6198 6196 3 DLHPLFDETFEFLVPAEPCRK Unmodified 2559.2468 0.24679557 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 1 6 0 1 76.918 76.918 4 0.00027887 24759 TMT1-5 56.529 37.237 91.713 185.49 118.02 77.999 127.98 128.53 87 182 123 80 130 124 2 2 2 2 2 2 11859 2993 2066 2973 4777 6199;6200 6199 2 DLIADLK Unmodified 786.44872 0.4487195 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 5.5 0.5 1 1 60.284 60.284 2 0.0083387 18053 TMT1-4 117.02 25.954 939.75 2162.6 1266.7 1214 1639.4 1717.4 893 2112 1345 1208 1677 1655 2 2 2 2 2 2 183930 2994 555 2974 4778;4779 6201;6202 6201 2 DLIAWQIPFLGAGIK Unmodified 1640.929 0.92901389 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 9 0 1 90.793 90.793 3 4.4152E-06 27792 TMT1-8 92.935 65.599 53.753 111.2 68.756 73.797 100.73 74.944 51 109 73 73 102 73 2 2 2 2 2 2 12039 2995 2305 2975 4780 6203;6204 6204 2 DLILADYGK Unmodified 1006.5335 0.53351176 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 5 0 1 61.433 61.433 2 4.7413E-05 18479 TMT1-4 120.12 39.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2996 2028 2976 4781 6205 6205 1 DLIPYLEK Unmodified 989.54335 0.54334816 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 6 0 1 66.752 66.752 2 0.03602 20746 TMT1-5 78.516 39.494 38.191 34.998 43.726 35.675 56.705 67.672 36 36 44 36 58 65 1 1 1 1 1 1 4841.6 2997 293 2977 4782 6206 6206 1 DLISHDEMFSDIYK Unmodified 1711.7763 0.77633758 687 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 0 0 0 5 0 2 63.585 63.585 3;4 1.1365E-18 19307 TMT1-4 155.98 145.12 230.96 343.81 205.66 189.16 216.26 302.97 218 341 218 188 225 290 2 2 2 2 2 2 44004 2998 687 2978 4783;4784 6207;6208 6207 2 DLISYLEK Unmodified 979.52261 0.52261272 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 6 0 1 69.079 69.079 2 9.0616E-05 21711 TMT1-5 155.1 0 261.98 278.81 277.09 248.42 267.7 279.12 247 283 283 247 276 269 2 2 2 2 2 2 30344 2999 2309 2979 4785 6209;6210 6210 2 DLKDYFSK Unmodified 1014.5022 0.50221163 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 1 8 0 1 55.743 55.743 3 0.018099 15859 TMT1-7 73.985 46.87 903.05 1622.9 858.16 890.9 761.9 1598.6 854 1596 924 875 820 1520 1 1 1 1 1 1 99371 3000 1748 2980 4786 6211 6211 1 DLKEEFTEALR Unmodified 1349.6827 0.68269519 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 5 0 1 60.941 60.941 3 0.0032701 18258 TMT1-4 78.864 41.183 226.93 180.8 298.99 232.89 268.67 271.63 214 189 297 234 276 262 1 1 1 1 1 1 36941 3001 934 2981 4787 6212 6212 1 DLKPENLILDHR Unmodified 1461.794 0.79397698 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 1 5 0 1 49.457 49.457 4 0.010888 13790 TMT1-4 60.157 39.3 114.95 194.71 172.76 145.72 131.16 189.2 109 193 177 145 138 181 1 1 1 1 1 1 10000 3002 1742 2982 4788 6213 6213 1 DLKPENLLIDHQGYIQVTDFGFAK Unmodified 2760.4123 0.412281 850 P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22694-8 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 0 0 0 0 1 7 0 1 72.38 72.38 4 1.5168E-30 22318 TMT1-6 141.69 116.07 245.83 287.33 278.13 215.42 275.48 309.81 232 290 283 217 283 298 2 2 2 2 2 2 29890 3003 850 2983 4789 6214;6215 6214 2 DLKPENLLIDQQGYLQVTDFGFAK Unmodified 2751.4119 0.41194665 847 P22612 PRKACG cAMP-dependent protein kinase catalytic subunit gamma yes yes 0 0 0 0 1 7 0 1 79.487 79.487 3 1.612E-14 25107 TMT1-6 83.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3004 847 2984 4790 6216 6216 1 DLKPENLLLASK Unmodified 1339.7711 0.77111627 1719;1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6;Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3;Q13554-2;Q13554-5;Q13554-8;Q13554-7;Q13554-3;Q13554-6;Q9UQM7-2;Q13554-4;Q9UQM7;Q13554 CAMK2G;CAMK2D;CAMK2B;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha no no 0 0 0 0 1 7 0 1 59.897 59.897 3 6.2331E-05 17422 TMT1-6 103.21 73.525 274.69 384.34 214.49 222.82 316.11 335.3 259 382 230 221 323 323 1 1 1 1 1 1 23985 3005 1718;1719 2985 4791 6217 6217 1 DLKPENLLYYSLDEDSK Unmodified 2040.9892 0.98916713 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 1 5.5 0.5 1 1 69.226 69.226 3;4 0.0029728 21645 TMT1-4 55.864 41.095 100.4 153.9 127.11 109.72 98.051 104.87 95 153 131 109 102 101 2 2 2 2 2 2 23895 3006 1746 2986 4792;4793 6218;6219 6218 2 DLKPSNILYVDESGNPESIR Unmodified 2245.1226 0.12264092 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 1 5 0 1 59.117 59.117 3 1.5913E-06 17575 TMT1-4 80.272 63.392 38.202 43.663 34.527 36.204 57.744 36.728 36 44 36 36 58 36 1 1 1 1 1 1 11251 3007 1256 2987 4794 6220 6220 1 DLKPSNLLLNTTCDLK Unmodified 1843.9713 0.97134899 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 1 8 0 1 63.345 63.345 3 1.254E-11 18863 TMT1-7 125.18 0 145.91 260.16 142.4 176.95 252.39 211.33 138 256 154 174 256 205 1 1 1 1 1 1 30566 3008 930 2988 4795 6221 6221 1 DLLAQQQR Unmodified 970.51959 0.51959303 3067 yes no 0 0 0 0 0 5 0 1 34.082 34.082 3 0.037229 7680 TMT1-4 51.854 1.894 77.07 163.83 72.709 81.554 82.541 137.29 73 160 80 80 87 131 1 1 1 1 1 1 5139.3 + 3009 3067 2989 4796 6222 6222 1 DLLAVVFYGTEK Unmodified 1353.718 0.71801807 675 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 0 0 8 0 1 83.237 83.237 3 0.0005335 26662 TMT1-7 84.169 58.05 77.28 109.37 83.586 80.732 91.777 82.661 73 109 87 80 94 80 2 2 2 2 2 2 8412.5 3010 675 2990 4797 6223;6224 6224 2 DLLDDLK Unmodified 830.43855 0.43854874 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 3.5 0.5 1 1 64.316 64.316 2 0.0094733 19904 TMT1-3 112.17 0 345.89 547.12 373.34 364.51 531.49 392.05 327 542 392 363 537 382 3 3 3 3 3 3 58765 3011 578 2991 4798;4799 6225;6226;6227 6227 3 DLLDDLKSELTGK Unmodified 1445.7613 0.76133944 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 1 6.5 0.5 1 1 80.283 80.283 3 1.4593E-06 26077 TMT1-5 115.78 85.757 806.51 1477.4 976.48 846.22 1077.2 1066.2 764 1455 1023 846 1102 1029 3 3 3 3 3 3 98345 3012 578 2992 4800;4801 6228;6229;6230 6229 3 DLLDLLVEAK Unmodified 1127.6438 0.64379049 82 O00571-2;O00571;O15523-2;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 6 0 2 86.97 86.97 2;3 0.0013486 28587 TMT1-5 88.681 41.494 77.632 71.493 56.491 35.57 79.985 90.46 73 73 58 37 81 87 2 2 2 2 2 2 20040 3013 82 2993 4802;4803 6231;6232 6231 2 DLLDTVLPHLYNETK Unmodified 1769.92 0.91996535 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 6.33 0.471 2 1 74.534 74.534 3;4 6.1611E-08 23807 TMT1-5 110.25 107.95 214.71 305.63 264.11 168.93 292.78 325.3 203 305 269 174 298 313 3 3 3 3 3 3 35444 3014 2116 2994 4804;4805;4806 6233;6234;6235 6233 3 DLLEEDELLEQK Unmodified 1472.7246 0.72461959 2641 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 yes yes 0 0 0 0 0 2 0 1 67.722 67.722 3 0.0015687 21787 TMT1-1 75.695 51.709 23.171 44.665 35.195 21.559 20.724 37.785 22 44 36 22 22 36 1 1 1 1 1 1 2817.3 3015 2641 2995 4807 6236 6236 1 DLLEVADVLEK Unmodified 1242.6707 0.67073352 2675 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 78.428 78.428 3 0.00027261 25402 TMT1-3 98.353 33.007 30.708 59.333 18.434 37.164 57.699 36.73 29 58 22 36 58 36 1 1 1 1 1 1 7349 3016 2675 2996 4808;4809 6237;6238 6237 2 DLLFILTAK Unmodified 1032.6219 0.62193284 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 9 0 1 82.225 82.225 2 0.00066611 24395 TMT1-8 131.44 56.129 76.148 101.72 99.966 87.792 129.42 103.97 72 102 102 88 131 101 2 2 2 2 2 2 10786 3017 1888 2997 4810 6239;6240 6239 2 DLLFQALGR Unmodified 1031.5764 0.57637963 2740 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 0 0 8 0 1 68.103 68.103 2 0.012742 20798 TMT1-7 85.161 35.802 61.267 103.14 75.03 112.97 90.294 82.703 58 102 80 109 94 80 1 1 1 1 1 1 20833 3018 2740 2998 4811 6241 6241 1 DLLFRDDTVCLAK Unmodified 1564.7919 0.79192806 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 6 0 1 61.7 61.7 3 0.0001629 18746 TMT1-5 93.348 62.133 146.4 165.45 141.74 100.69 124.83 220.3 138 167 145 102 131 210 1 1 1 1 1 1 18505 3019 451 2999 4812 6242 6242 1 DLLGTVWGGPANLEAIAK Unmodified 1823.9781 0.97814893 2746 Q9NTX5-6;Q9NTX5-2;Q9NTX5;Q9NTX5-3 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 0 8 0 1 81.694 81.694 3 3.2542E-19 26012 TMT1-7 132.51 111.55 54.066 64.584 55.637 66.7 54.729 83.718 51 65 58 65 58 80 1 1 1 1 1 1 15484 3020 2746 3000 4813 6243 6243 1 DLLHPSLEEEK Unmodified 1308.6561 0.65614609 2069 Q71UM5 RPS27L 40S ribosomal protein S27-like yes yes 0 0 0 0 0 4.5 0.5 1 1 50.038 50.038 3 0.00010134 14031 TMT1-4 103.08 69.705 169.49 256.32 150.06 153.28 207.75 172.09 160 254 160 152 211 167 2 2 2 2 2 2 25304 3021 2069 3001 4814;4815 6244;6245 6245 2 DLLHPSPEEEK Unmodified 1292.6248 0.62484596 1100 P42677 RPS27 40S ribosomal protein S27 yes yes 0 0 0 0 0 3 0 1 43.45 43.45 3 0.0016653 12714 TMT1-2 79.82 49.489 37.789 112.67 45.614 58.773 101.16 82.393 36 109 51 58 102 80 1 1 1 1 1 1 12790 3022 1100 3002 4816 6246 6246 1 DLLIAYYDVDYEK Unmodified 1618.7767 0.77665516 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5.33 0.471 2 1 74.528 74.528 3 1.7887E-11 23671 TMT1-4 142.57 112.4 878.39 1131 911.93 786.2 869.93 1181.9 829 1133 942 784 905 1132 6 6 6 6 6 6 165250 3023 955 3003 4817;4818;4819 6247;6248;6249;6250;6251;6252;6253 6248 7 DLLIDEWK Unmodified 1030.5335 0.53351176 1890 Q16539;Q16539-2 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 5 0 1 69.072 69.072 2 0.0048727 21442 TMT1-4 121.96 59.756 213.89 374.6 342.46 212.02 252.7 338.17 203 371 347 217 262 324 2 2 2 2 2 2 39074 3024 1890 3004 4820 6254;6255 6254 2 DLLLDPAWEK Unmodified 1198.6234 0.6233894 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-2;O43707-3;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 5 0 1 70.752 70.752 2 0.0047831 22119 TMT1-4 91.855 62.382 99.088 199.71 128.83 179.78 144.76 173.89 94 196 138 174 152 167 1 1 1 1 1 1 16088 3025 672;195;1022 3005 4821 6256 6256 1 DLLLQALR Unmodified 940.57057 0.57056597 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 8 0 1 64.803 64.803 2 0.0060762 19415 TMT1-7 110.12 21.074 182.37 465.18 333.76 216 301.21 351.71 174 454 344 221 309 338 1 1 1 1 1 1 53980 3026 2914 3006 4822 6257 6257 1 DLLNELESPKEEPIEE Unmodified 1882.9048 0.9047688 2585 Q9BZH6 WDR11 WD repeat-containing protein 11 yes yes 0 0 0 0 1 3 0 1 70.195 70.195 3 1.9551E-05 23188 TMT1-2 72.315 48.516 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3027 2585 3007 4823 6258 6258 1 DLLNLSR Unmodified 829.46577 0.46576654 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 6 0 1 52.072 52.072 2 0.02749 14915 TMT1-5 91.783 21.093 314.01 284.5 363.45 288.03 387.14 372.71 296 293 365 290 395 360 1 1 1 1 1 1 75599 3028 2662 3008 4824 6259 6259 1 DLLNNHILK Unmodified 1078.6135 0.61349341 1863 Q15582 TGFBI Transforming growth factor-beta-induced protein ig-h3 yes yes 0 0 0 0 0 7 0 1 50.956 50.956 3 0.0046492 13899 TMT1-6 52.79 22.601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3029 1863 3009 4825 6260 6260 1 DLLNRVDSDTLCTEEVFPTAGAGTDLR Unmodified 2964.4135 0.41347956 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 1 4 0 1 68.882 68.882 4 0.00015182 21692 TMT1-3 52.971 45.525 23.244 28.679 36.492 13.957 14.001 30.514 22 29 36 15 15 29 1 1 1 1 1 1 3925.6 3030 929 3010 4826 6261 6261 1 DLLNSVP Unmodified 756.40177 0.4017693 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 4 0 1 64.869 64.869 2 0.0036231 20133 TMT1-3 86.113 80.972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3031 1977 3011 4827 6262 6262 1 DLLPSDMAVALLEAQAGTGHIIDPATSAR Unmodified 2932.4964 0.49642133 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 84.664 84.664 4 5.9626E-13 27756 TMT1-5 83.088 66.788 23.189 59.823 19.456 14.406 44.087 37.118 22 58 22 15 44 36 1 1 1 1 1 1 8717.1 3032 1833 3012 4828 6263 6263 1 DLLQFFKPR Unmodified 1162.6499 0.64987892 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 1 9 0 1 67.424 67.424 3 0.0033675 18654 TMT1-8 82.749 41.21 108 145 119.31 101.67 143.7 96.103 102 145 123 102 145 94 1 1 1 1 1 1 11481 3033 2339 3013 4829 6264 6264 1 DLLSHENAATLNDVK Unmodified 1638.8213 0.82131394 2220 Q8NE86-3;Q8NE86 MCU Calcium uniporter protein, mitochondrial yes no 0 0 0 0 0 4.67 0.471 1 2 50.76 50.76 3;4 2.9751E-06 14274 TMT1-4 101.42 68.226 299.54 344.44 400.82 365.86 372.71 414.7 283 349 406 363 386 399 4 4 4 4 4 4 36174 3034 2220 3014 4830;4831;4832 6265;6266;6267;6268 6266 4 DLLSSVSR Unmodified 875.47125 0.47124585 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 6 0 1 47.881 47.881 2 0.000943 13309 TMT1-5 98.009 35.129 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3035 804 3015 4833 6269 6269 1 DLLSTLHLLVALAK Unmodified 1505.9181 0.91811486 2681 Q9HBI0;Q9HBI0-3;Q9HBI0-2 PARVG Gamma-parvin yes no 0 0 0 0 0 9 0 1 93.755 93.755 3 4.9738E-10 28812 TMT1-8 110.29 78.231 46.458 73.461 64.504 50.866 54.907 99.703 44 73 66 51 58 95 2 2 2 2 2 2 4048.7 3036 2681 3016 4834 6270;6271 6270 2 DLLSWMESIIR Unmodified 1361.7013 0.70132214 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 9 0 1 98.697 98.697 2 3.4119E-10 30591 TMT1-8 148.56 99.139 46.692 42.814 51.061 29.57 27.392 46.122 44 44 51 29 29 44 2 2 2 1 2 2 6487.8 3037 651 3017 4835 6272;6273 6273 2 DLLVGPGVELLLTPR Unmodified 1590.9345 0.9344932 2337 Q92974-3;Q92974-2;Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 0 7 0 1 83.451 83.451 3 5.547E-11 26645 TMT1-6 125.73 107.59 30.927 21.086 14.128 15.286 14.196 23.047 29 22 15 15 15 22 1 1 1 1 1 1 3036.7 3038 2337 3018 4836 6274 6274 1 DLLVTGAYEISDQSGGAGGLR Unmodified 2078.028 0.02801225 1197 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 0 4 0 2 67.543 67.543 3 3.7087E-40 21139 TMT1-3 174.68 152.25 30.568 58.944 42.294 36.446 20.296 30.335 29 58 44 36 22 29 1 1 1 1 1 1 15124 3039 1197 3019 4837;4838 6275;6276 6275 2 DLLVVDTPGLFDTK Unmodified 1531.8134 0.81337501 2233 Q8NHV1 GIMAP7 GTPase IMAP family member 7 yes yes 0 0 0 0 0 6 0 1 77.434 77.434 3 9.4017E-05 25007 TMT1-5 86.291 71.089 109.81 76.82 53.551 90.739 61.707 92.047 103 80 58 87 66 88 2 2 2 2 2 2 12774 3040 2233 3020 4839 6277;6278 6278 2 DLMPHDLAR Unmodified 1066.523 0.52296385 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 4 0 1 42.655 42.655 3 0.0014523 11346 TMT1-3 92.732 56.285 85.277 62.717 41.424 44.693 49.474 52.954 80 65 44 44 51 51 1 1 1 1 1 1 14048 3041 1312 3021 4840 6279 6279 1 DLMTDLKSEISGDLAR Unmodified 1762.8771 0.87711426 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 6 0 1 75.526 75.526 3 2.0883E-05 24155 TMT1-5 88.319 52.297 37.864 96.685 46.529 59.743 46.657 114.86 36 94 51 58 51 109 1 1 1 1 1 1 14500 3042 555 3022 4841 6280 6280 1 DLMVGDEASELR Oxidation (M) 1349.6133 0.613295 1380 P61160 ACTR2 Actin-related protein 2 yes yes 0 0 1 0 0 2 0 1 50.163 50.163 2 0.0057653 14937 TMT1-1 99.568 73.947 30.778 35.782 26.718 52.941 64.303 36.541 29 36 29 51 65 36 1 1 1 1 1 1 8189.1 3043 1380 3023 4842 6281 6281 226 1 DLMVGDEASELR Unmodified 1333.6184 0.61838038 1380 P61160 ACTR2 Actin-related protein 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 54.781 54.781 2 2.5852E-19 16806 TMT1-1 191.55 132.4 222.51 345.85 181.68 191.26 238.9 310.85 210 342 196 189 247 298 4 4 4 4 4 4 71143 3044 1380 3023 4843;4844 6282;6283;6284;6285 6282 4 DLNHVCVISETGK Unmodified 1470.7137 0.71367774 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 5 0 1 46.812 46.812 3 0.00042811 12743 TMT1-4 79.81 55.429 138.31 206.45 204.11 127.82 170.19 173.17 131 206 206 131 174 167 1 1 1 1 1 1 25882 3045 395 3024 4845 6286 6286 1 DLNLMDIK Unmodified 960.49502 0.49501776 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 64.575 64.575 2 0.015089 19892 TMT1-5 93.111 38.906 107.97 152.47 118.5 109.85 118.42 151.19 102 152 123 109 123 145 1 1 1 1 1 1 14710 3046 1723 3025 4846 6287 6287 1 DLNSDMDSILASLK Unmodified 1520.7392 0.73922379 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 6 0 2 83.981 83.981 2;3 1.1817E-09 27478 TMT1-5 121.45 97.419 61.16 125.51 74.082 104.13 98.014 113.4 58 123 80 101 102 109 2 2 2 2 2 2 25829 3047 1076 3026 4847;4848 6288;6289 6288 2 DLPDEVR Unmodified 842.4134 0.41339662 1958 Q5H9R7-3;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 0 2 0 1 30.69 30.69 3 0.025432 7314 TMT1-1 63.287 14.527 46.378 80.795 71.652 50.567 48.142 83.906 44 80 73 51 51 80 1 1 1 1 1 1 67597 3048 1958 3027 4849 6290 6290 1 DLPEEYLSAIYNEIAGK Unmodified 1923.9466 0.94657403 3053 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes yes 0 0 0 0 0 6 0 1 94.238 94.238 3 3.8087E-05 31081 TMT1-5 57.788 38.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3049 3053 3028 4850 6291 6291 1 DLPEHAVLK Unmodified 1020.5604 0.56039521 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 4.5 0.5 1 1 43.058 43.058 3 0.0002495 11271 TMT1-4 121.64 77.831 889.54 1685.9 1091.4 1280.4 1512.7 1632.6 843 1658 1159 1257 1556 1572 2 2 2 2 2 2 223100 3050 1545 3029 4851;4852 6292;6293 6293 2 DLPELALDTPR Unmodified 1238.6507 0.65066678 1946 Q53EL6-2;Q53EL6 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 0 3.5 0.5 1 1 61.855 61.855 2 2.3219E-22 18847 TMT1-3 163.65 115.69 38.152 43.521 43.195 36.131 34.163 53.391 36 44 44 36 36 51 1 1 1 1 1 1 4807.8 3051 1946 3030 4853;4854 6294;6295 6295 2 DLPGALDEKELIEK Unmodified 1568.8298 0.82975336 2370 Q96BM9 ARL8A ADP-ribosylation factor-like protein 8A yes yes 0 0 0 0 1 4.67 0.471 1 2 61.139 61.139 3;4 2.0532E-14 18344 TMT1-4 133.47 97.947 596.07 679.98 773.01 487.9 724.06 893.97 563 689 775 501 743 858 3 3 3 3 3 3 33533 3052 2370 3031 4855;4856;4857 6296;6297;6298 6297 3 DLPNALDEK Unmodified 1013.5029 0.50293991 2762 Q9NVJ2 ARL8B ADP-ribosylation factor-like protein 8B yes yes 0 0 0 0 0 3 1 1 1 51.798 51.798 2;3 0.0032826 14926 TMT1-3 101.97 57.527 415.97 542.38 501.43 402.2 446.49 562.9 393 544 512 403 463 540 3 3 3 3 3 3 84309 3053 2762 3032 4858;4859 6299;6300;6301 6301 3 DLPPKPQLGDLLAK Unmodified 1503.8661 0.86607929 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 8 0 1 64.579 64.579 4 0.0078748 19338 TMT1-7 57.136 44.99 45.325 88.478 61.864 65.752 85.393 75.381 43 87 65 65 87 73 1 1 1 1 1 1 4219.5 3054 2911 3033 4860 6302 6302 1 DLPPVSGSIIWAK Unmodified 1381.7606 0.76055158 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 70.377 70.377 3 0.00023274 21652 TMT1-7 87.001 59.592 77.65 79.098 47.009 68.146 63.295 76.012 73 80 51 66 66 73 2 2 2 2 2 2 5107.7 3055 1763 3034 4861 6303;6304 6304 2 DLPSHTK Unmodified 796.40792 0.40791731 2807 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 0 0 0 5 0 1 29.69 29.69 3 0.0021899 5956 TMT1-4 104.45 70.897 61.576 64.067 56.315 51.329 56.242 60.223 58 65 58 51 58 58 1 1 1 1 1 1 2833.3 3056 2807 3035 4862 6305 6305 1 DLPVSEQQER Unmodified 1199.5782 0.57823012 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 2 0 1 37.526 37.526 2 0.00035082 9982 TMT1-1 121.8 103.02 38.109 43.404 50.412 44.299 41.907 60.632 36 44 51 44 44 58 1 1 1 1 1 1 10500 3057 2930 3036 4863 6306 6306 1 DLQAICGISCDELSSMVLELR Oxidation (M) 2424.1335 0.13348165 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 1 0 0 5.5 0.5 1 1 77.776 77.776 3 1.1814E-05 24932 TMT1-4 76.417 62.79 15.645 36.501 44.751 13.208 27.631 61.04 15 36 44 15 29 58 1 1 1 1 1 1 11794 + 3058 32;554 3037 4864;4865 6307;6308 6307 6 2 DLQAICGISCDELSSMVLELR Unmodified 2408.1386 0.13856703 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 0.5 1 1 87.235 87.235 3 3.1872E-24 28710 TMT1-5 137.12 124.19 108.53 184.09 197.91 161.79 127.07 136.02 103 183 198 161 132 131 6 7 6 7 6 6 78741 + 3059 32;554 3037 4866;4867 6309;6310;6311;6312;6313;6314;6315 6312 7 DLQDKNCLLETAK Unmodified 1546.7661 0.76610724 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 6 0 1 52.268 52.268 3 0.0027717 15067 TMT1-5 72.615 61.095 92.077 139.01 96.259 118.97 110.67 151.41 87 138 102 116 116 145 1 1 1 1 1 1 11366 3060 251 3038 4868 6316 6316 1 DLQEVIELTK Unmodified 1186.6445 0.64451877 315 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 0 0 0 5 0 1 70.394 70.394 3 0.0034296 22000 TMT1-4 77.062 43.172 38.034 50.748 56.893 58.957 55.635 67.702 36 51 58 58 58 65 1 1 1 1 1 1 6572.8 3061 315 3039 4869 6317 6317 1 DLQFVEVTDVK Unmodified 1291.666 0.66598249 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 5 0 1 64.731 64.731 2 4.2126E-07 19787 TMT1-4 150.06 80.028 77.4 102.15 69.578 64.863 108.21 82.192 73 102 73 65 109 80 1 1 1 1 1 1 15074 3062 442 3040 4870 6318 6318 1 DLQGRDEQSEEK Unmodified 1432.643 0.64301522 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2 0.816 1 1 1 30.402 30.402 3 5.5514E-09 7284 TMT1-1 144.27 107.12 981.56 1586 1219.9 995.82 894.39 1498.9 929 1572 1261 993 948 1430 4 4 4 4 4 4 209520 3063 1019 3041 4871;4872;4873 6319;6320;6321;6322;6323 6321 5 DLQHPNEFIR Unmodified 1267.6309 0.63093439 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 4.5 0.5 1 1 42.714 42.714 3 1.7005E-05 11067 TMT1-4 97.813 65.493 115.68 129.82 105.35 94.596 99.259 89.91 109 131 109 94 102 87 1 1 1 1 1 1 30774 3064 1286 3042 4874;4875 6324;6325 6325 2 DLQLVLPDYFPER Unmodified 1603.8246 0.8246084 2389 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 0 5.5 0.5 2 2 77.784 77.784 2;3 2.8187E-05 25024 TMT1-5 108.72 61.529 223.17 297.15 291.77 262.95 320.19 254.17 211 298 298 262 326 247 5 5 5 5 5 5 36413 3065 2389 3043 4876;4877;4878;4879 6326;6327;6328;6329;6330 6329 5 DLQNFLK Unmodified 876.47052 0.47051757 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 7 0 1 60.319 60.319 2 0.0076556 17601 TMT1-6 125.25 36.662 3028.5 4505.4 2777.8 2665.3 4592.9 4113.8 2859 4470 2941 2669 4643 3982 3 3 3 3 3 3 327560 3066 509 3044 4880 6331;6332;6333 6332 3 DLQNVNITLR Unmodified 1184.6513 0.65133548 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 6 0 1 53.708 53.708 2 0.0034845 15585 TMT1-5 96.009 38.835 183.85 285.81 237.55 139.53 255.24 269.88 174 284 242 145 259 260 1 1 1 1 1 1 52154 3067 1012 3045 4881 6334 6334 1 DLQQYQSQAK Unmodified 1207.5833 0.5833155 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 5 0 1 41.053 41.053 3 0.0015494 10419 TMT1-4 87.184 65.191 240.81 287.58 219.87 211.82 244.9 291.49 227 289 229 210 253 280 1 1 1 1 1 1 45163 3068 272 3046 4882 6335 6335 1 DLQQYVSVVVLDEVGLAEDSPK Unmodified 2402.2217 0.22168626 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 5 0 1 93.315 93.315 4 0.00013741 30882 TMT1-4 57.985 42.563 23.473 0 22.337 30.279 4.6177 38.244 22 0 22 29 7 36 1 0 1 1 1 1 1297.8 3069 1999 3047 4883 6336 6336 1 DLQSNVEHLTEK Unmodified 1411.6943 0.69432251 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 4 0 1 48.65 48.65 3 9.6089E-09 13774 TMT1-3 129.54 114.85 138.39 228.25 172.19 207.94 195.29 218.29 131 226 181 203 203 210 1 1 1 1 1 1 24887 3070 1559 3048 4884 6337 6337 1 DLQSSDR Unmodified 819.37226 0.37226009 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 2 0 1 25.062 25.062 2 0.0076505 5025 TMT1-1 125.31 41.562 46.736 34.301 50.942 43.691 72.555 52.296 44 36 51 44 73 51 1 1 1 1 1 1 6126.9 3071 655 3049 4885 6338 6338 1 DLQVKPGESLEVIQTTDDTK Unmodified 2215.122 0.12197221 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 4.33 0.471 2 1 59.039 59.039 3;4 1.4815E-13 17843 TMT1-3 113.26 98.677 517.47 862.66 664.06 559.08 655.51 906.58 490 854 687 559 681 868 4 4 4 4 4 4 100660 3072 126 3050 4886;4887;4888 6339;6340;6341;6342 6340 4 DLSDFHQSMAQWLAYSR Unmodified 2053.9316 0.93160944 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 70.772 70.772 3 1.3254E-19 19986 TMT1-8 127.94 105.39 15.683 29.054 44.546 27.836 64.102 75.989 15 29 44 29 65 73 1 1 1 1 1 1 7115.8 3073 2066 3051 4889 6343 6343 1 DLSELGSVR Unmodified 974.50327 0.50327426 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 49.331 49.331 2 6.6699E-09 13982 TMT1-3 173.73 89.629 299.91 441.54 255.64 312.08 321.56 422.55 283 438 275 305 335 405 2 2 2 2 2 2 46878 3074 1833 3052 4890 6344;6345 6344 2 DLSGLDAETLLK Unmodified 1273.6765 0.67654718 936 P29350;P29350-3;P29350-4 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 69.865 69.865 3 4.3019E-08 21744 TMT1-4 126.66 45.134 315.61 515.06 440.47 361.42 425.16 477.16 299 511 452 362 438 459 2 2 2 2 2 2 116520 3075 936 3053 4891 6346;6347 6346 2 DLSKPIGVVNPK Unmodified 1265.7343 0.73433683 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 1 8 0 1 49.691 49.691 3 0.00019676 13475 TMT1-7 97.957 64.549 351.8 486.74 333.42 394.03 424.96 408.94 332 485 353 386 437 395 1 1 1 1 1 1 25937 3076 2061 3054 4892 6348 6348 1 DLSLDDFK Unmodified 951.45493 0.45492709 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 5 0 1 63.442 63.442 2 0.0035185 19229 TMT1-4 131.06 48.757 535.74 798.72 532.76 530.16 284.51 813.77 506 793 561 519 322 771 2 2 2 2 2 2 121680 3077 949 3055 4893 6349;6350 6349 2 DLSLDDFKGK Unmodified 1136.5714 0.57135383 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 1 6 0 1 56.746 56.746 3 0.0016523 16796 TMT1-5 91.937 78.534 267.1 329.59 274.13 221.72 185.82 414.7 252 331 282 221 201 394 1 1 1 1 1 1 20576 3078 949 3056 4894 6351 6351 1 DLSLEEIQK Unmodified 1073.5605 0.56045479 752 P16949;P16949-2 STMN1 Stathmin no no 0 0 0 0 0 4 0 1 57.202 57.202 2 8.6659E-06 17137 TMT1-3 159.37 51.704 159.78 381.11 234.62 201.29 293.09 333.82 152 372 247 202 300 321 1 1 1 1 1 1 50553 3079 752 3057 4895 6352 6352 1 DLSQILK Unmodified 815.47527 0.4752686 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 7 0 1 60.023 60.023 2 0.0088226 17419 TMT1-6 114.93 34.753 635.06 788.62 800.23 576.23 706.82 912.58 600 794 810 583 731 875 2 2 2 2 2 2 128540 3080 1878 3058 4896 6353;6354 6353 2 DLSQLTK Unmodified 803.43888 0.43888309 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 6 0 1 48.978 48.978 2 0.0079379 13737 TMT1-5 121.85 48.233 373.1 550.85 486.39 344.69 529.75 439 353 549 496 351 536 426 1 1 1 1 1 1 31470 3081 515 3059 4897 6355 6355 1 DLSQNFPTK Unmodified 1048.5189 0.51892433 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 6 0 1 49.439 49.439 2 0.0015617 13922 TMT1-5 117.71 68.17 91.776 121.99 161.27 91.291 97.798 136.86 87 123 160 94 102 131 1 1 1 1 1 1 13086 3082 2789 3060 4898 6356 6356 1 DLSSHQLNEFLAQTLQR Unmodified 1999.0123 0.012302606 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 7 0 1 67.131 67.131 3 0.015213 20283 TMT1-6 45.989 25.023 847.19 1019.6 1020.5 1248.4 1405.9 2926.6 800 1028 1055 1222 1495 2783 1 1 1 1 1 1 30014 3083 608 3061 4899 6357 6357 1 DLSSSEK Unmodified 764.35521 0.35521304 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 4 0 1 33.921 33.921 2 0.018828 7882 TMT1-3 98.523 30.211 85.03 78.218 69.878 89.493 76.202 98.03 80 80 73 87 80 94 1 1 1 1 1 1 5441.1 3084 1762 3062 4900 6358 6358 1 DLSSVQTLLTK Unmodified 1203.6711 0.67106787 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 68.3 68.3 3 0.00062382 20790 TMT1-7 90.614 66.232 115.65 113.58 122.58 69.886 138.09 88.802 109 116 123 73 138 87 1 1 1 1 1 1 18971 3085 1737 3063 4901 6359 6359 1 DLSTIEPLKK Unmodified 1142.6547 0.65468953 1064 P39687;O95626 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D yes no 0 0 0 0 1 7 0 1 52.789 52.789 3 0.010033 14591 TMT1-6 69.721 0 176.44 285.53 220.51 159.09 257.07 220.79 167 283 227 162 260 214 1 1 1 1 1 1 20422 3086 1064 3064 4902 6360 6360 1 DLTDYLMK Unmodified 997.47903 0.47903335 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 0 6.62 1.98 1 1 3 4 2 2 67.002 67.002 2;3 1.5777E-12 20176 TMT1-6 187.55 86.804 38590 51463 39899 33666 40621 56940 36428 51440 41295 33676 42183 54502 22 22 22 22 22 22 7308100 3087 1357;1479;1488;1952 3065 4903;4904;4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915 6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374;6375;6376;6377;6378;6379;6380;6381;6382 6373 22 DLTDYLMK Oxidation (M) 1013.4739 0.47394797 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 1 0 0 6.67 0.943 2 1 62.828 62.828 3 0.013375 20193 TMT1-5 85.064 31.898 568.98 869.94 657.27 574.53 668.9 861.43 538 864 682 573 693 826 4 4 4 4 4 4 54417 3088 1357;1479;1488;1952 3065 4916;4917;4918 6383;6384;6385;6386 6385 216 4 DLTDYLMKILTER Unmodified 1609.8385 0.83854391 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 1 8.5 0.5 1 1 87.548 87.548 3 0.01275 26421 TMT1-8 51.829 28.08 99.41 98.07 160.98 129.28 171.17 173.14 94 101 160 130 175 167 3 3 3 3 3 3 11427 3089 1357;1479;1488;1952 3066 4919;4920 6387;6388;6389 6389 3 DLTEYLK Unmodified 880.4542 0.45419881 1917;2743 Q29RF7;Q29RF7-3;Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5A;PDS5B Sister chromatid cohesion protein PDS5 homolog A;Sister chromatid cohesion protein PDS5 homolog B no no 0 0 0 0 0 6 0 1 59.742 59.742 2 0.033063 17970 TMT1-5 89.298 21.541 61.121 134.03 73.546 104.7 127.84 127.47 58 131 80 102 131 123 1 1 1 1 1 1 8637.3 3090 1917;2743 3067 4921 6390 6390 1 DLTGELEYATK Unmodified 1238.603 0.60304789 2599 Q9GZP4-2;Q9GZP4 PITHD1 PITH domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 59.513 59.513 2 1.5124E-08 18024 TMT1-3 124.1 88.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3091 2599 3068 4922 6391 6391 1 DLTGVQNLR Unmodified 1014.5458 0.54580778 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 45.177 45.177 2 0.0016552 12090 TMT1-4 116.05 46.853 107.44 209.27 159.71 177.07 191.21 165.1 102 206 167 174 196 160 1 1 1 1 1 1 16490 3092 1737 3069 4923 6392 6392 1 DLTLDQAYSYAVENAK Unmodified 1799.8578 0.85775902 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 5 0 1 70.526 70.526 3 3.0344E-18 22041 TMT1-4 146.1 124.85 107.31 181.94 203.97 118.93 178.47 156.94 102 181 204 123 181 152 1 1 1 1 1 1 20522 3093 860 3070 4924 6393 6393 1 DLTSVNILLK Unmodified 1114.6598 0.6597749 1546 Q01082;Q01082-3;Q01082-2;O15020-2;O15020 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 0 0 8 0 1 70.091 70.091 2 0.00066506 21510 TMT1-7 110.47 46.177 68.931 79.309 69.545 97.308 68.514 98.249 65 80 73 94 73 94 1 1 1 1 1 1 5750.9 3094 1546 3071 4925 6394 6394 1 DLTTAGAVTQCYR Unmodified 1454.6824 0.68237762 1568 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 0 5 0 1 46.725 46.725 3 0.0049038 12679 TMT1-4 63.185 52.954 145.81 245.84 172.16 183.94 193.18 220.48 138 243 181 181 200 212 1 1 1 1 1 1 22985 3095 1568 3072 4926 6395 6395 1 DLTTGYDDSQPDKK Unmodified 1581.7158 0.71584581 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 1 4 0 1 42.844 42.844 3 3.5617E-10 11420 TMT1-3 121.76 99.285 250.43 412.2 300.86 216.49 204.82 447.21 237 408 311 218 220 425 1 1 1 1 1 1 36560 3096 2407 3073 4927 6396 6396 1 DLVAIEAK Unmodified 857.48583 0.48583328 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 52.948 52.948 2 0.0057253 15338 TMT1-4 114.89 31.517 115.86 99.05 99.619 94.697 112.04 143.91 109 102 102 94 116 138 1 1 1 1 1 1 140910 3097 1546 3074 4928 6397 6397 1 DLVALQLALPDWLDPAR Unmodified 1905.036 0.035998161 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 7 0 1 95.948 95.948 3 0.0012545 31227 TMT1-6 62.475 53.191 15.857 21.981 21.402 22.514 13.607 30.526 15 22 22 22 15 29 1 1 1 1 1 1 8110.8 3098 2085 3075 4929 6398 6398 1 DLVDAASAVTEAVK Unmodified 1387.7195 0.71947463 2396 Q96EM0 L3HYPDH Trans-3-hydroxy-L-proline dehydratase yes yes 0 0 0 0 0 5 0 1 70.659 70.659 3 0.0011414 22056 TMT1-4 70.438 46.451 69.279 41.423 43.158 36.271 26.827 53.6 65 44 44 36 29 51 1 1 1 1 1 1 5130.1 3099 2396 3076 4930 6399 6399 1 DLVDYITTHYK Unmodified 1366.6769 0.67688153 278 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 0 7 0 1 65.787 65.787 3 0.0041858 19755 TMT1-6 70.942 60.087 61.62 64.19 48.726 51.491 71.683 67.244 58 65 51 51 73 65 1 1 1 1 1 1 7129.4 3100 278 3077 4931 6400 6400 1 DLVEAVAHILGIR Unmodified 1404.8089 0.80889876 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 91.952 91.952 3 2.3224E-09 28101 TMT1-8 111.26 83.088 15.761 21.715 37.704 21.266 28.323 30.106 15 22 37 22 29 29 1 1 1 1 1 1 10499 3101 1176 3078 4932 6401 6401 1 DLVGIFKMNNIDGK Oxidation (M) 1578.8076 0.80757813 2195 Q8N9V3-2;Q8N9V3 WDSUB1 WD repeat, SAM and U-box domain-containing protein 1 yes no 0 0 1 0 1 9 0 1 78.489 78.489 3 0.0351 23036 TMT1-8 40.552 16.265 61.291 94.572 78.412 48.592 131.74 88.983 58 94 80 51 131 87 1 1 1 1 1 1 21585 3102 2195 3079 4933 6402 6402 283 1 DLVILLYETALLSSGFSLEDPQTHANR Unmodified 3001.5397 0.53966635 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 8.5 0.5 1 1 101.75 101.75 4 3.866E-13 31738 TMT1-8 75.896 54.89 41.282 50.495 58.928 37.542 83.617 67.97 39 51 59 39 83 66 4 5 5 5 4 5 17990 3103 545 3080 4934;4935 6403;6404;6405;6406;6407 6406 5 DLVIVAANLQK Unmodified 1182.6972 0.69722304 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 8 0 1 65.135 65.135 2 2.2822E-06 19565 TMT1-7 132.88 77.414 177.02 243.96 158.67 145.72 175.74 200.72 167 243 167 145 181 193 1 1 1 1 1 1 10343 3104 367 3081 4936 6408 6408 1 DLVKPGDENLR Unmodified 1254.6568 0.65681479 1943 Q4V328-4;Q4V328 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 1 5 0 1 42.078 42.078 3 0.0083941 10863 TMT1-4 69.261 61.818 92.291 132.05 66.266 97.243 82.369 121.31 87 131 73 94 87 116 1 1 1 1 1 1 7501.3 3105 1943 3082 4937 6409 6409 1 DLVLGPSGVLQGIRPGK Unmodified 1704.9887 0.98865404 1936 Q49A26-5;Q49A26-2;Q49A26-3;Q49A26;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 1 9 0 1 63.236 63.236 3 2.6082E-09 17003 TMT1-8 90.754 70.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3106 1936 3083 4938 6410 6410 1 DLVLLGEQFR Unmodified 1188.6503 0.65027285 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 6 0 1 68.174 68.174 2 0.044284 21322 TMT1-5 65.5 19.783 37.96 65.653 56.675 43.788 49.259 60.422 36 65 58 44 51 58 1 1 1 1 1 1 5668.1 3107 1565 3084 4939 6411 6411 1 DLVLSVHNR Unmodified 1051.5774 0.57744226 1813 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 0 6 0 1 39.161 39.161 3 0.0047509 9871 TMT1-5 76.221 51.886 54.105 64.691 49.112 43.012 56.368 67.682 51 65 51 43 58 65 1 1 1 1 1 1 3275.6 3108 1813 3085 4940 6412 6412 1 DLVPDLSNFYAQYK Unmodified 1671.8144 0.81443765 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 0 7 0 1 77.442 77.442 3 1.8507E-11 24237 TMT1-6 128.9 98.358 138.73 189.28 146.97 146.27 183.69 212.22 131 189 153 145 189 204 2 2 2 2 2 2 39309 3109 834 3086 4941 6413;6414 6413 2 DLVSSLTSGLLTIGDR Unmodified 1645.8887 0.88866522 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 8 0 2 86.41 86.41 2;3 2.2434E-15 27699 TMT1-7 136.3 91.874 120.63 172.57 137.8 133.94 171.12 198.72 114 172 143 133 176 191 2 2 2 2 2 2 46005 3110 1283 3087 4942;4943 6415;6416 6415 2 DLVTTLGGALLWLSGHAGTQAQGAAR Unmodified 2563.3507 0.35068379 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 9 0 1 91.361 91.361 4 3.5077E-67 27934 TMT1-8 166.6 144.28 62.443 88.245 70.385 67.156 99.934 106.95 59 88 73 67 102 103 3 3 3 3 3 3 12256 3111 800 3088 4944 6417;6418;6419 6418 3 DLVYILMAK Phospho (STY) 1144.5603 0.56033393 2070 Q75QN2-2;Q75QN2 INTS8 Integrator complex subunit 8 yes no 0 0 0 1 0 9 0 1 84.628 84.628 2 0.036045 25365 TMT1-8 41.984 6.5699 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3112 2070 3089 4945 6420 6420 26 1 DLYANTVLSGGTTMYPGIADR Oxidation (M) 2230.0576 0.057597819 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 0 6 2.11 1 1 4 1 1 1 65.101 65.101 2;3 4.7681E-19 19870 TMT1-5 129.2 95.84 758.56 1048.3 742.91 819.18 872.1 1013.4 716 1045 782 805 903 974 16 16 16 16 16 16 796170 3113 1357;1479 3090 4946;4947;4948;4949;4950;4951;4952;4953;4954 6421;6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437 6427 217 17 DLYANTVLSGGTTMYPGIADR Unmodified 2214.0627 0.062683196 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 6 1.75 1 3 7 1 2 1 76.792 76.792 2;3 1.0665E-52 21673 TMT1-5 203.2 181.97 1615.3 2018.1 1649.1 1443.2 1382.9 2330.3 1524 2025 1703 1434 1462 2223 21 22 22 21 22 22 1659300 3114 1357;1479 3090 4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967;4968;4969 6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464 6447 27 DLYDAGVK Unmodified 879.4338 0.43379771 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 0 4.5 0.5 1 1 48.154 48.154 2 0.0038186 13495 TMT1-3 129.47 14.534 1445.8 2257.6 1434.7 1215.9 1876.3 1975.1 1366 2236 1508 1223 1912 1903 3 3 3 3 3 3 241590 3115 534 3091 4970;4971 6465;6466;6467 6465 3 DLYDAGVKR Unmodified 1035.5349 0.53490874 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 1 5 0 1 39.868 39.868 3 0.0038673 9945 TMT1-4 85.716 45.671 137.96 758.62 335.3 277.04 421.44 576.41 134 727 364 279 434 552 1 1 1 1 1 1 48784 3116 534 3092 4972 6468 6468 1 DLYEDELVPLFEK Unmodified 1608.7923 0.79230522 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 4.5 0.5 1 1 80.202 80.202 3 0.00015237 26083 TMT1-3 89.959 70.901 160.25 333.85 195.47 269.32 228.84 255.71 152 327 211 261 239 246 3 3 3 3 3 3 57368 3117 170 3093 4973;4974 6469;6470;6471 6469 3 DLYNWLEVEFNPLK Unmodified 1778.8879 0.88793694 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 7 0 1 92.049 92.049 2 0.00015627 29800 TMT1-6 73.435 41.427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3118 1754 3094 4975 6472 6472 1 DLYQLNPNAEWVIK Unmodified 1701.8726 0.87262123 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 6.5 0.5 1 1 72.535 72.535 3 5.1789E-08 22361 TMT1-6 114.69 89.773 145.22 180.35 146.36 147.17 137.87 205 137 181 152 145 145 196 3 3 3 3 3 3 31551 3119 2172 3095 4976;4977 6473;6474;6475 6475 3 DLYSALIK Unmodified 921.51713 0.51713341 306 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 0 7 0 1 63.521 63.521 2 0.0052491 18822 TMT1-6 119.27 47.041 91.899 138.52 126.7 140.67 138.72 188.99 87 138 131 138 145 181 1 1 1 1 1 1 21326 3120 306 3096 4978 6476 6476 1 DMALNIGNEIDAQNPQIK Unmodified 1982.9731 0.97313991 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 5 0 1 65.225 65.225 4 0.00056291 19949 TMT1-4 62.203 46.319 61.444 72.335 71.412 65.636 61.301 106.98 58 73 73 65 65 102 1 1 1 1 1 1 9997.6 3121 45 3097 4979 6477 6477 1 DMDLVEVNEAFAPQYLAVER Unmodified 2308.1045 0.10454801 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 4 0 1 78.676 78.676 3 3.1401E-10 25523 TMT1-3 100.21 85.055 23.403 14.011 22.197 14.549 27.826 53.572 22 15 22 15 29 51 1 1 1 1 1 1 9843.6 3122 1102 3098 4980 6478 6478 1 DMETIGFAVYEVPPELVGQPAVHLK Unmodified 2738.3989 0.39893912 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 6 0 1 78.421 78.421 4 1.3752E-14 25302 TMT1-5 98.703 87.179 93.241 107.89 107.46 79.358 89.201 159.49 88 109 109 80 94 152 2 2 2 2 2 2 23694 3123 536 3099 4981 6479;6480 6479 2 DMGTVVLGK Unmodified 918.48445 0.48445308 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 0 6 0 1 54.216 54.216 2 0.0021239 15817 TMT1-5 105.78 64.797 61.143 117.91 83.49 73.228 84.279 97.799 58 116 87 73 87 94 1 1 1 1 1 1 7341 3124 718 3100 4982 6481 6481 1 DMHSAYK Unmodified 850.36434 0.36433794 572 P08621-2;P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 0 5 0 1 31.047 31.047 3 0.01733 6474 TMT1-4 70.912 43.798 54.024 73.102 55.481 58.736 71.863 52.315 51 73 58 58 73 51 1 1 1 1 1 1 4297.6 3125 572 3101 4983 6482 6482 1 DMILQFISR Unmodified 1121.5903 0.59031513 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 9 0 1 72.942 72.942 2 0.02692 20833 TMT1-8 66.92 32.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3126 1226 3102 4984 6483 6483 1 DMLEAGILDTYLGK Unmodified 1537.7698 0.76979564 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5.67 0.471 1 2 80.748 80.748 2;3 2.3342E-14 26220 TMT1-5 138.75 116.01 84.749 108.74 91.192 80.018 105.65 136.63 80 109 94 80 109 131 3 3 3 3 3 3 32441 3127 1232 3103 4985;4986;4987 6484;6485;6486 6485 3 DMLLELEEQLAESR Unmodified 1674.8135 0.81345137 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 3 0 1 83.693 83.693 3 0.00084479 28217 TMT1-2 73.156 41.5 7.3961 15.356 6.3042 6.9862 15.369 0 7 15 7 7 15 0 1 1 1 1 1 0 2256.7 3128 1924 3104 4988 6487 6487 1 DMLLEVK Unmodified 846.45209 0.45209032 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5 0 1 58.607 58.607 2 0.019116 17359 TMT1-4 98.299 24.683 276.16 383.38 329.53 289.05 382.25 452.8 261 383 339 289 393 435 1 1 1 1 1 1 44125 3129 787 3105 4989 6488 6488 1 DMNQVLDAYENK Unmodified 1438.6398 0.6398441 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 5 0 1 62.709 62.709 3 0.00031062 18967 TMT1-4 89.231 64.378 68.473 148.19 88.205 95.781 90.572 97.62 65 145 94 94 94 94 1 1 1 1 1 1 15721 3130 860 3106 4990 6489 6489 1 DMPIQAFLLYQEPVLGPVRGPFPIIV Unmodified 2908.5925 0.59249397 27 CON__P02666 yes yes 0 0 0 0 1 9 0 2 103 103 3;4 1.2584E-12 32209 TMT1-8 73.389 59.517 25.517 21.842 21.047 6.1443 14.722 19.953 24 22 21 6 15 19 4 3 3 2 4 3 10858 + 3131 27 3107 4991;4992 6490;6491;6492;6493 6491 4 DMPLLSCLESLR Unmodified 1432.7054 0.70542124 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 1 77.805 77.805 2 0.00079965 25051 TMT1-5 94.791 58.266 38.133 58.579 33.574 37.503 49.805 52.945 36 58 36 37 51 51 1 1 1 1 1 1 10139 3132 228 3108 4993 6494 6494 1 DMPPAFIK Unmodified 917.46807 0.46807473 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 0 1 57.243 57.243 2 0.0015257 17007 TMT1-5 87.323 40.897 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3133 776 3109 4994 6495 6495 1 DMTMFVTASK Unmodified 1129.5148 0.51476693 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 8 0 1 61.307 61.307 3 0.00070117 18061 TMT1-7 66.595 45.132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3134 1695 3110 4995 6496 6496 1 DMVGIAQTGSGK Unmodified 1162.5652 0.56522259 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 6 0 1 46.826 46.826 3 0.00012213 12891 TMT1-5 73.466 62.943 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3135 2321 3111 4996 6497 6497 1 DNAGAATEEFIK Unmodified 1264.5935 0.59354583 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 0 2.67 0.471 1 2 51.573 51.573 2;3 1.5911E-05 15810 TMT1-2 105.95 99.711 153.68 180.48 168.03 193.74 149.84 220.65 145 182 174 189 159 211 3 3 3 3 3 3 20318 3136 609 3112 4997;4998;4999 6498;6499;6500 6499 3 DNALTLLIK Unmodified 999.59645 0.59644637 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 7 0 1 68.603 68.603 2 0.0021152 20826 TMT1-6 105.98 81.945 77.644 79.08 48.103 43.62 85.348 106.3 73 80 51 44 87 102 1 1 1 1 1 1 17164 3137 2642 3113 5000 6501 6501 1 DNCAPESIEFPVSEAR Unmodified 1819.8047 0.8046776 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 2.5 0.5 2 2 56.023 56.023 2;3 3.3451E-35 17281 TMT1-1 198.29 175.96 522.4 557.45 634.79 387.94 607.66 579.62 493 567 636 400 617 560 7 7 7 7 7 7 538370 3138 484 3114 5001;5002;5003;5004 6502;6503;6504;6505;6506;6507;6508 6502 7 DNCCILDER Unmodified 1193.4805 0.48050669 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 2.33 0.471 2 1 41.69 41.69 2 8.8244E-10 11638 TMT1-2 179.09 128.96 1211 1655.3 1370.7 1329.9 1422.6 1965.6 1144 1654 1419 1316 1483 1882 5 5 5 5 5 5 489130 3139 439 3115 5005;5006;5007 6509;6510;6511;6512;6513 6513 5 DNCQYVYNVDQR Unmodified 1572.6627 0.66270481 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 2.67 1.25 1 1 1 42.077 42.077 2;3 2.0425E-33 11083 TMT1-3 208.33 196.12 600.12 827.97 687.58 689.69 726.35 801.16 567 827 709 681 751 771 5 5 4 5 5 5 431580 3140 554 3116 5008;5009;5010 6514;6515;6516;6517;6518 6518 5 DNDFLNEGQK Unmodified 1178.5204 0.52038089 1503 P78356;P78356-2 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta yes no 0 0 0 0 0 2.5 0.5 1 1 45.691 45.691 2 4.8645E-05 13536 TMT1-2 146.71 0 99.404 137.99 128.11 108.81 143.08 104.65 94 138 131 109 145 102 1 1 1 1 1 1 17560 3141 1503 3117 5011;5012 6519;6520 6520 2 DNDGWLTSDPR Unmodified 1274.5527 0.55274365 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 2.67 0.471 1 2 48.717 48.717 2 2.0379E-08 14678 TMT1-2 121.08 98.602 108.32 129.69 79.048 151.71 109.94 129.05 102 130 87 145 116 124 2 2 2 2 2 2 21874 3142 438 3118 5013;5014;5015 6521;6522;6523;6524 6524 4 DNDLISLPK Unmodified 1013.5393 0.53932542 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 3.33 1.7 1 1 1 58.315 58.315 2 1.0934E-08 17152 TMT1-4 169.77 81.48 1545.9 2122.4 1671.9 1260.4 1780.3 2211.2 1460 2119 1722 1275 1830 2122 3 3 3 3 3 3 482160 3143 1851 3119 5016;5017;5018 6525;6526;6527;6528 6528 4 DNENVVNEYSSELEK Unmodified 1767.7799 0.77990263 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 2.2 0.748 1 2 2 57.653 57.653 3 9.1385E-28 18186 TMT1-2 182.17 157.45 2839.3 3488.8 3506.8 2533.7 3294.8 4075.1 2682 3514 3552 2566 3395 3911 6 6 6 6 6 6 808300 3144 438 3120 5019;5020;5021;5022;5023 6529;6530;6531;6532;6533;6534;6535;6536 6534 8 DNENVVNEYSSELEKHQLYIDETVNSNIPTNLR Unmodified 3875.845 0.84496909 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 4 0 2 69.204 69.204 4;5 1.6136E-14 21902 TMT1-3 89.391 89.072 107.13 161.81 72.288 90.331 82.137 137.3 101 160 80 88 87 131 3 3 3 3 3 3 32969 3145 438 3121 5024;5025 6537;6538;6539 6539 3 DNETLAELK Unmodified 1031.5135 0.5135046 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 2.5 0.5 1 1 50.867 50.867 2;3 0.00024445 15302 TMT1-1 143.89 63.823 169.16 247.83 213.46 150.36 220.72 225.02 160 247 218 153 225 217 2 2 2 2 2 2 26246 3146 2788 3122 5026;5027 6540;6541 6540 2 DNEVLLQIDKDVR Unmodified 1555.8206 0.82058566 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 1 4 0 1 57.34 57.34 3 0.006094 17151 TMT1-3 65.374 32.672 108.28 83.18 124.81 61.445 114.89 105.45 102 87 123 65 116 102 1 1 1 1 1 1 11281 3147 2759 3123 5028 6542 6542 1 DNFQDTLQVVTAHYR Unmodified 1805.8697 0.86966111 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 6 0 1 59.22 59.22 3 0.0097787 17815 TMT1-5 52.365 48.645 99.63 107.32 116.17 54.008 130.94 105 94 109 116 58 131 102 1 1 1 1 1 1 16680 3148 1106 3124 5029 6543 6543 1 DNGKHALIIYDDLSK Unmodified 1700.8733 0.87334951 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 5 0 1 57.727 57.727 4 0.031565 17038 TMT1-4 44.601 16.751 226.48 515.37 272.49 255.73 300.67 527.62 215 503 292 254 316 503 1 1 1 1 1 1 22944 3149 888 3125 5030 6544 6544 1 DNHLLGTFDLTGIPPAPR Unmodified 1933.0058 0.005760665 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 6.4 0.49 3 2 66.16 66.16 3 8.1017E-25 19709 TMT1-6 144.72 105.71 330.63 388.64 368.25 329.43 320.71 393.8 312 392 377 327 334 378 6 6 6 6 6 6 93343 3150 640 3126 5031;5032;5033;5034;5035 6545;6546;6547;6548;6549;6550;6551 6550 7 DNIACVILTFK Unmodified 1292.6799 0.67985842 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 8.5 0.5 1 1 78.249 78.249 2 7.0667E-06 22826 TMT1-8 113.22 74.921 61.322 79.551 85.795 73.105 83.479 121.27 58 80 87 73 87 116 2 2 2 2 2 2 13094 3151 655 3127 5036;5037 6552;6553 6553 2 DNIACVILTFKEPFGTEGR Unmodified 2166.0779 0.07793933 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 1 8 0 2 78.802 78.802 3;4 4.2914E-05 24890 TMT1-7 74.269 71.986 99.257 200.18 100.05 120.67 66.084 137.76 94 196 109 117 73 131 2 2 2 2 2 2 27514 3152 655 3128 5038;5039 6554;6555 6555 2 DNIDITLQWLIQHSK Unmodified 1822.9577 0.95774784 2762;2370 Q9NVJ2;Q96BM9 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A no no 0 0 0 0 0 8 0 1 79.266 79.266 4 0.023752 25079 TMT1-7 42.913 25.632 30.486 66.271 49.84 27.21 80.642 52.065 29 65 51 29 80 51 1 1 1 1 1 1 2500.1 3153 2762;2370 3129 5040 6556 6556 1 DNINIEEAAR Unmodified 1143.552 0.55201537 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 2 0 1 42.756 42.756 2 0.00013432 12129 TMT1-1 135.8 40.312 183.92 277.36 233.34 196.92 180.84 227.23 174 276 240 196 189 218 2 2 2 2 2 2 55209 3154 1734 3130 5041 6557;6558 6558 2 DNIQGITKPAIR Unmodified 1324.7463 0.7462985 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 6.75 2.33 1 1 2 3 1 45.43 45.43 2;3 2.0261E-09 11551 TMT1-6 151.16 126.65 33631 32411 28858 52713 60341 65497 31655 33046 30795 50840 62153 63057 14 14 14 14 14 14 3675400 3155 1443 3131 5042;5043;5044;5045;5046;5047;5048;5049 6559;6560;6561;6562;6563;6564;6565;6566;6567;6568;6569;6570;6571;6572 6562 14 DNLAEDIMR Unmodified 1075.4968 0.49680868 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2.5 0.5 1 1 54.413 54.413 2 2.1744E-05 16745 TMT1-1 154.35 128.78 546.47 652.11 476.26 367.45 572.31 661.64 515 655 494 372 585 636 3 3 3 3 3 3 92427 3156 575 3132 5050;5051 6573;6574;6575 6574 3 DNLEFFLAGIGR Unmodified 1350.6932 0.6932003 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 7 0 1 79.33 79.33 2 3.2254E-05 25049 TMT1-6 112.7 70.879 37.96 65.652 56.706 43.096 85.921 90.29 36 65 58 44 87 87 1 1 1 1 1 1 11553 3157 1176 3133 5052 6576 6576 1 DNLIVPILEEEVQNSVSGESEA Unmodified 2370.1438 0.14382987 2988 Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3 MOB4 MOB-like protein phocein yes no 0 0 0 0 0 3 0 1 94.351 94.351 3 0.0011641 30002 TMT1-2 51.175 39.729 2.1128 2.9989 3.031 3.0984 0 4.264 2 3 3 3 0 4 2 2 1 2 0 2 2332.8 3158 2988 3134 5053 6577;6578 6577 2 DNLPFLNSVLK Unmodified 1258.6921 0.69213767 141 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase yes yes 0 0 0 0 0 8 0 1 74.217 74.217 2 2.0786E-05 23149 TMT1-7 119.45 72.188 30.687 44.164 34.851 29.099 27.707 37.585 29 44 36 29 29 36 1 1 1 1 1 1 4142.3 3159 141 3135 5054 6579 6579 1 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ Unmodified 3450.4641 0.46413074 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 1 2 1 1 1 72.348 72.348 4 0.014145 18214 TMT 1-phospho 35.648 29.928 99.869 93.95 87.354 62.943 95.851 140.11 94 96 89 64 99 134 3 3 3 3 3 3 63425 3160 1422 3136 5055;5056 6580;6581;6582 6581 3 DNLTLWTSDQQDDDGGEGNN Unmodified 2192.873 0.87302775 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 1.6 0.49 2 3 69.837 69.837 3 4.6528E-07 17233 TMT 1-phospho 85.764 81.147 374.6 417.72 360.94 343.84 449.26 463.68 353 422 369 342 458 447 9 10 8 10 8 10 390890 3161 1411 3137 5057;5058;5059;5060;5061 6583;6584;6585;6586;6587;6588;6589;6590;6591;6592 6584 10 DNLTLWTSDQQDEEAGEGN Unmodified 2120.8771 0.8770505 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 2 0.707 1 2 1 69.029 69.029 3 1.3937E-09 22344 TMT1-1 93.152 72.784 168.49 213.42 174.54 123.13 164.67 218.09 159 214 179 125 170 209 6 6 6 6 6 6 111240 3162 1588 3138 5062;5063;5064;5065 6593;6594;6595;6596;6597;6598;6599 6595 7 DNLTLWTSDSAGEECDAAEGAEN Unmodified 2453.9765 0.97650654 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 2.33 0.471 2 1 71.071 71.071 3 1.7021E-17 22774 TMT1-1 104.52 101.23 76.625 54.48 59.886 28.515 82.697 51.388 72 57 59 29 82 50 5 5 4 3 5 4 51813 3163 909 3139 5066;5067;5068 6600;6601;6602;6603;6604 6600 5 DNLTLWTSDTQGDEAEAGEGGEN Unmodified 2407.9888 0.98878579 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 0 2.56 1.07 2 2 3 2 69.956 69.956 3 5.3643E-13 17398 TMT 1-phospho 98.74 95.008 556.45 714.03 550.63 532.33 577.37 720.13 525 715 573 527 599 691 13 13 13 13 13 13 634460 3164 1471 3140 5069;5070;5071;5072;5073;5074;5075;5076;5077 6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621 6605 17 DNLTLWTSENQGDEGDAGEGEN Unmodified 2349.9469 0.94692097 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 2 0.707 1 2 1 68.644 68.644 3 2.9451E-06 22003 TMT1-1 72.585 64.496 222.75 330.91 183.38 221.72 240.71 308.67 210 328 198 217 250 296 7 8 8 8 8 8 182830 3165 984 3141 5078;5079;5080;5081 6622;6623;6624;6625;6626;6627;6628;6629 6625 8 DNNLLGK Unmodified 772.40792 0.40791731 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 0 4 2.16 1 1 1 45.283 45.283 2;3 0.010017 12010 TMT1-4 109.86 44.825 1958.9 3063.6 2516.1 2127.1 2771.1 2934.5 1854 3043 2592 2131 2839 2827 4 4 4 4 4 4 238580 3166 641 3142 5082;5083;5084 6630;6631;6632;6633 6631 4 DNNLLGR Unmodified 800.41407 0.41406533 618;754 P17066;P0DMV8;P0DMV9;P0DMV8-2 HSPA6;HSPA1A;HSPA1B Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 4 0 1 37.257 37.257 2 0.040882 9196 TMT1-3 85.813 74.092 234.7 339.84 300.83 219.42 339.96 376.19 222 339 307 223 347 362 1 1 1 1 1 1 54656 3167 754;618 3143 5085 6634 6634 1 DNNQFASASLDR Unmodified 1336.6008 0.60075648 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 3 0 1 41.43 41.43 2 7.5189E-14 11873 TMT1-2 177.16 148.24 38.071 43.296 57 66.598 55.796 52.774 36 44 58 65 58 51 1 1 1 1 1 1 15295 3168 1021 3144 5086 6635 6635 1 DNPGVVTCLDEAR Unmodified 1444.6616 0.66164217 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 2.5 0.5 1 1 47.647 47.647 2;3 8.0275E-47 13953 TMT1-1 218.12 211.69 69.549 116.82 114.32 85.995 121.35 97.807 66 116 116 87 123 95 2 2 2 2 2 2 34848 3169 845 3145 5087;5088 6636;6637;6638 6636 3 DNPKPNVSEALR Unmodified 1338.6892 0.68917755 1514 P82909 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 0 0 0 0 1 5 0 1 39.74 39.74 3 0.025356 9959 TMT1-4 54.276 31.698 196.71 434.01 294.62 309.07 358.24 424.71 187 425 310 305 370 408 1 1 1 1 1 1 18341 3170 1514 3146 5089 6639 6639 1 DNPLDPVLAK Unmodified 1080.5815 0.58152458 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 5 0 1 58.857 58.857 2 0.0010541 17465 TMT1-4 77.744 36.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3171 2362 3147 5090 6640 6640 1 DNQLSEVANK Unmodified 1116.5411 0.54111633 1804 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 0 4 0 1 43.24 43.24 2 0.016357 11627 TMT1-3 77.744 44.366 61.571 95.354 30.553 53.146 41.243 68.113 58 94 36 51 44 65 1 1 1 1 1 1 8696 3172 1804 3148 5091 6641 6641 1 DNSDFDLLTVSETANEPPQDEGNSFNSPR Unmodified 3194.3912 0.3912238 144 O15371-2;O15371-3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 0 3 0 1 69.526 69.526 4 0.0088176 22929 TMT1-2 36.382 26.57 7.3446 6.5786 22.384 22.186 27.988 38.643 7 7 22 22 29 37 1 1 1 1 1 1 4070 3173 144 3149 5092 6642 6642 1 DNSEIHHK Unmodified 978.45191 0.45190739 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 4 0.816 1 1 1 21.439 21.439 4 0.0023779 3907 TMT1-2 92.439 73.168 239.47 149.65 202.12 213.46 272.27 131.88 225 159 205 211 274 131 4 4 4 4 4 4 14266 3174 1684 3150 5093;5094;5095 6643;6644;6645;6646 6644 4 DNSQVNAVTVLTLLDK Unmodified 1728.9258 0.92577901 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6.4 0.49 3 2 81.074 81.074 2;3 3.298E-16 26287 TMT1-5 137.73 116.63 590.36 707.46 807.2 607.11 611.88 866.25 558 715 813 610 636 829 5 5 5 5 4 5 358750 3175 372 3151 5096;5097;5098;5099;5100 6647;6648;6649;6650;6651;6652;6653 6647 7 DNTIEHLLPLFLAQLK Unmodified 1864.0458 0.045834566 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 9 0 1 89.12 89.12 4 0.00039077 27092 TMT1-8 59.261 39.521 69.048 72.078 56.138 43.672 57.107 45.274 65 73 58 44 58 44 1 1 1 1 1 1 4067.6 3176 956 3152 5101 6654 6654 1 DNTIEHLLPLFLAQLKDECPEVR Unmodified 2749.4109 0.41090079 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 1 7.5 0.5 1 1 84.738 84.738 4 3.5121E-06 27116 TMT1-6 69.272 66.75 169.9 187.28 141.07 108.04 143.23 222.97 160 189 146 109 149 213 4 4 4 4 4 4 24084 3177 956 3153 5102;5103 6655;6656;6657;6658 6656 4 DNTINLIHTFR Unmodified 1342.6993 0.69934831 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 51.542 51.542 3 0.00047438 14110 TMT1-6 92.781 39.914 160.74 165.78 255.16 200 180.14 334.91 152 170 254 200 192 319 1 1 1 1 1 1 92558 3178 129 3154 5104;5105 6659;6660 6660 2 DNTNEIYSGK Unmodified 1139.5095 0.50948185 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 3.67 0.471 1 2 40.552 40.552 2;3 1.812E-06 11587 TMT1-2 160.98 131.89 469.43 543.58 532.62 325.85 396.81 588.83 443 549 538 334 413 563 3 3 3 3 3 3 96419 3179 500 3155 5106;5107;5108 6661;6662;6663 6661 3 DNTTLLTQVQTTMR Unmodified 1620.8141 0.81412007 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 6 0 1 58.126 58.126 2 0.00033518 17357 TMT1-5 68.972 45.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3180 1720 3156 5109 6664 6664 1 DNVDDPTGNFR Unmodified 1248.5371 0.53709359 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 2 0 1 42.226 42.226 2 0.0038705 11899 TMT1-1 89.301 44.983 30.523 58.819 49.915 35.568 42.821 45.682 29 58 51 36 44 44 1 1 1 1 1 1 18857 3181 1656 3157 5110 6665 6665 1 DNYSLLSYICR Unmodified 1402.6551 0.65510023 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 6 0 1 68.043 68.043 2 0.025314 21278 TMT1-5 68.515 44.05 30.448 66.165 56.34 51.465 48.906 60.432 29 65 58 51 51 58 1 1 1 1 1 1 5741.7 3182 1095 3158 5111 6666 6666 1 DNYVPEVSALDQEIIEVDPDTK Unmodified 2488.1857 0.18569468 576 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 0 2.5 0.5 2 2 78.809 78.809 3;4 4.7888E-09 26500 TMT1-2 81.373 68.571 77.423 102.82 92.974 97.39 106.16 98.429 73 103 96 96 109 95 4 5 5 5 5 4 25624 3183 576 3159 5112;5113;5114;5115 6667;6668;6669;6670;6671 6670 5 DPAAAPATGNK Unmodified 1011.4985 0.49852324 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 4 0 1 33.643 33.643 3 0.01124 7790 TMT1-3 60.691 35.899 84.892 77.834 93.393 72.209 107.07 105.68 80 80 94 73 109 102 1 1 1 1 1 1 6238.2 3184 1566 3160 5116 6672 6672 1 DPDAGIDEAQVEQDAQALFQAGELK Unmodified 2657.2457 0.24566918 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 3 0 1 85.493 85.493 4 1.2946E-07 28723 TMT1-2 71.656 59.803 22.321 21.615 17.247 18.406 12.749 30.55 21 22 18 18 14 29 2 2 2 2 2 2 2698.4 3185 578 3161 5117 6673;6674 6673 2 DPDAQPGGELMLGGTDSK Unmodified 1786.8043 0.80434324 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 3 0 1 56.642 56.642 3 4.5355E-05 17871 TMT1-2 77.08 71.538 92.245 100.63 100.64 72.23 82.969 137.28 87 102 102 73 87 131 1 1 1 1 1 1 14835 3186 533 3162 5118 6675 6675 1 DPDNIAAWYLR Unmodified 1332.6463 0.64625011 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 6 0 1 67.005 67.005 2 0.02556 20862 TMT1-5 68.355 59.021 38.041 58.324 49.211 51.176 86.869 51.887 36 58 51 51 87 51 1 1 1 1 1 1 6304.1 3187 666 3163 5119 6676 6676 1 DPDQTDGLGLSYLSSHIANVER Unmodified 2386.1401 0.14008189 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 4 0 1 65.893 65.893 3 6.2921E-23 20468 TMT1-3 123.02 116.88 69.961 86.671 70.534 65.071 94.093 66.605 66 87 73 65 95 65 2 2 2 2 2 2 43176 + 3188 506 3164 5120 6677;6678 6677 2 DPEAPIFQVADYGIVADLFK Unmodified 2207.115 0.11503634 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 97.377 97.377 3 8.984E-07 32273 TMT1-5 80.142 71.541 8.4871 6.6982 10.617 18.856 9.8441 23.171 8 7 11 18 11 22 1 1 1 1 1 1 2684.4 3189 693 3165 5121 6679 6679 1 DPENFPFVVLGNK Unmodified 1474.7456 0.7456298 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 7.5 0.5 1 1 74.264 74.264 3 4.5351E-11 23081 TMT1-6 136.93 116.51 783.32 1000.4 770.32 726.98 864.43 933.67 739 1002 801 722 889 899 4 4 4 4 4 4 125570 3190 1237 3166 5122;5123 6680;6681;6682;6683 6681 4 DPFAHLPK Unmodified 923.4865 0.48650199 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 7 0 1 48.389 48.389 3 0.0032947 12885 TMT1-6 59.8 37.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3191 904 3167 5124 6684 6684 1 DPFYMGLYQK Unmodified 1260.5849 0.5848954 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 7 0 1 66.746 66.746 3 0.012049 20140 TMT1-6 62.303 37.006 91.88 169.76 103.41 87.069 98.799 113.37 87 167 109 87 102 109 1 1 1 1 1 1 7792.1 3192 859 3168 5125 6685 6685 1 DPGVLDR Unmodified 770.39227 0.39226725 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 0 2.5 0.5 1 1 37.396 37.396 2 0.015119 10020 TMT1-1 101.41 66.481 596.64 951.56 627.99 559.95 839.88 775.53 564 942 659 561 853 750 2 2 2 2 2 2 132520 3193 987 3169 5126;5127 6686;6687 6686 2 DPHLACVAYER Unmodified 1329.6136 0.61356977 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 3 0 1 39.648 39.648 3 1.3561E-05 11128 TMT1-2 114.76 102.14 122.76 143.23 166.05 121.84 201.63 148.82 116 145 167 124 203 145 2 2 2 2 2 2 45878 3194 1540 3170 5128 6688;6689 6688 2 DPILFPSFIHSQK Unmodified 1527.8086 0.80856441 457 P04040 CAT Catalase yes yes 0 0 0 0 0 8.33 0.471 2 1 64.253 64.253 3;4 9.8841E-14 19193 TMT1-7 164.22 143.97 347.84 818.78 536.04 547.99 604.85 782.24 331 800 565 541 628 750 4 4 4 4 4 4 94869 3195 457 3171 5129;5130;5131 6690;6691;6692;6693 6690 4 DPIPYLPPLEK Unmodified 1280.7016 0.70163972 572 P08621-2;P08621;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 0 6 0 1 70.256 70.256 3 0.040257 22195 TMT1-5 45.915 31.039 53.814 87.627 78.48 57.261 77.391 106.52 51 87 80 58 80 102 1 1 1 1 1 1 17901 3196 572 3172 5132 6694 6694 1 DPNIVIAK Unmodified 868.50182 0.5018177 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6 0 1 49.965 49.965 2 0.0085835 14102 TMT1-5 101.64 78.215 283.69 334.35 368.12 289.34 360.44 295.66 268 338 372 291 367 287 2 2 2 2 2 2 65067 3197 955 3173 5133 6695;6696 6695 2 DPPAEWTR Unmodified 970.45084 0.45084476 2500 Q99952-2;Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 yes no 0 0 0 0 0 3 0 1 40.559 40.559 2 0.02931 11473 TMT1-2 82.279 48.482 61.663 64.309 41.472 44.138 78.801 83.031 58 65 44 44 80 80 1 1 1 1 1 1 15590 3198 2500 3174 5134 6697 6697 1 DPPSDLLLLK Unmodified 1109.6332 0.6332258 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 6 0 1 68.109 68.109 3 0.006063 21287 TMT1-5 70.1 32.988 46.36 104.49 54.712 34.602 78.983 90.488 44 102 58 36 80 87 1 1 1 1 1 1 7204.9 3199 666 3175 5135 6698 6698 1 DPPSEPSPLEAEFQR Unmodified 1697.7897 0.78967946 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 2 0 1 55.016 55.016 3 9.7398E-05 16825 TMT1-1 80.706 65.544 54.218 57.452 36.148 53.198 78.897 68.105 51 58 36 52 80 66 2 2 1 2 2 2 11949 3200 570 3176 5136 6699;6700 6699 2 DPPSWSVLAGHSR Unmodified 1407.6895 0.6895119 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.2 2.79 1 1 1 1 1 47.659 47.659 3 8.8089E-14 12636 TMT1-6 164.56 145.36 1999.1 2581.5 2484.9 1674.2 2484.6 2744.4 1889 2592 2518 1710 2539 2641 10 10 10 10 10 10 568060 3201 3010 3177 5137;5138;5139;5140;5141 6701;6702;6703;6704;6705;6706;6707;6708;6709;6710 6706 10 DPQALSEHLK Unmodified 1136.5826 0.58258722 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5 0 1 43.205 43.205 3 6.6525E-05 11326 TMT1-4 122.18 59.019 316.81 481.89 446.78 410.11 489.23 434.83 300 480 458 408 500 421 1 1 1 1 1 1 45593 3202 986 3178 5142 6711 6711 1 DPQALSEHLKNPVIAQK Unmodified 1887.0214 0.021410729 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 8 0 1 50.874 50.874 4 0.0014906 13995 TMT1-7 62.475 53.874 77.309 101.89 85.079 57.291 54.905 91.175 73 102 87 58 58 87 1 1 1 1 1 1 6259.5 3203 986 3179 5143 6712 6712 1 DPQELLEGGNQGEGDPQAEGR Unmodified 2194.9727 0.97268222 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 2 0 1 53.349 53.349 3 2.9336E-07 16214 TMT1-1 81.949 73.157 46.551 73.722 48.534 44.667 28.315 53.558 44 73 51 44 29 51 2 2 2 2 1 2 8785.7 3204 1187 3180 5144 6713;6714 6713 2 DPSASPGDAGEQAIR Unmodified 1469.6746 0.6746497 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 2.33 0.471 2 1 37.377 37.377 2;3 4.5056E-22 9907 TMT1-1 174.05 131.45 567.63 590.61 760.02 587.29 653.21 600.71 536 603 762 590 670 581 3 3 3 3 3 3 333150 3205 776 3181 5145;5146;5147 6715;6716;6717 6715 3 DPSAVAK Unmodified 686.3599 0.35990449 516;35 P06744;P06744-2;CON__Q3ZBD7 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 0 5 0 1 35.094 35.094 2 0.013448 8114 TMT1-4 102.71 21.417 723.74 453.9 606.91 474.7 848.04 530.12 680 482 609 482 849 520 1 1 1 1 1 1 48282 + 3206 516;35 3182 5148 6718 6718 1 DPSQELEFIADILNQDAK Unmodified 2044.9953 0.99531514 1177 P49354-2;P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 0 0 0 0 0 5 0 2 97.501 97.501 3;4 2.7884E-10 32406 TMT1-4 108.97 98.914 21.932 48.593 59.824 22.181 51.334 45.439 21 48 59 22 51 44 3 3 3 2 2 3 4377.5 3207 1177 3183 5149;5150 6719;6720;6721 6720 3 DPTEEIEILLR Unmodified 1326.7031 0.70309628 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 4 0 1 77.831 77.831 2 0.042892 25155 TMT1-3 63.694 33.951 23.228 52.377 19.195 30.299 13.506 23.067 22 51 22 29 15 22 1 1 1 1 1 1 2440.2 3208 1256 3184 5151 6722 6722 1 DPTSLLGVLQAEADSTSEGLEDAVHSR Unmodified 2796.3414 0.34136048 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 4 0 1 86.057 86.057 3 1.6027E-08 28343 TMT1-3 57.351 57.351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3209 1916 3185 5152 6723 6723 1 DPVQEAWAEDVDLR Unmodified 1641.7635 0.76346471 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 2.33 0.471 2 1 65.219 65.219 2;3 1.573E-16 20804 TMT1-1 149.96 121.95 91.656 130.29 174.54 122.35 147.66 166.35 87 131 174 124 152 160 3 3 3 3 3 3 93480 3210 706;707 3186 5153;5154;5155 6724;6725;6726 6724 3 DPVQLNLLYVQAR Unmodified 1527.8409 0.84092717 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 7.5 0.5 1 1 67.739 67.739 2 1.7628E-12 20577 TMT1-6 156.58 127.27 382.46 351.69 523.77 404.29 496.98 491.1 361 363 522 407 509 474 3 3 3 3 3 3 255340 3211 3010;3014 3187 5156;5157 6727;6728;6729 6728 3 DPVYTFSISQNPFPIENR Unmodified 2123.0324 0.032369346 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 6 0 1 73.41 73.41 3 0.00020237 23381 TMT1-5 67.995 51.329 30.806 28.307 28.204 29.639 20.059 46.332 29 29 29 29 22 44 1 1 1 1 1 1 6863.8 3212 2238 3188 5158 6730 6730 1 DPYHGRPLTK Unmodified 1182.6146 0.61455605 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 1 6 0 1 32.203 32.203 4 0.023999 7097 TMT1-5 54.776 23.282 68.719 93.829 92.89 63.788 91.493 113.58 65 94 94 65 94 109 1 1 1 1 1 1 3785 3213 2198 3189 5159 6731 6731 1 DPYTGQSVSLFQALK Unmodified 1652.841 0.84098675 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 71.46 71.46 2 5.1659E-14 22061 TMT1-7 113.95 87.432 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3214 1833 3190 5160 6732 6732 1 DQALQLQVLNSR Unmodified 1383.747 0.74702678 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 6 0 1 55.098 55.098 2 0.0029655 16158 TMT1-5 83.226 82.021 423.44 534.19 516.04 327.21 435.24 503.52 400 537 522 335 447 484 1 1 1 1 1 1 57281 3215 1684 3191 5161 6733 6733 1 DQALTEEHAR Unmodified 1168.5473 0.54726434 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 2 0 1 26.113 26.113 3 0.00074946 5530 TMT1-1 94.791 68.118 146.43 141.79 156.67 161.8 199.24 164.87 138 145 160 160 203 160 1 1 1 1 1 1 18438 3216 672 3192 5162 6734 6734 1 DQAVENILVSPVVVASSLGLVSLGGK Unmodified 2550.4269 0.42686843 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 9 0 1 100.25 100.25 4 2.4718E-05 31184 TMT1-8 52.329 32.781 46.701 51.472 42.277 45.051 27.727 46.113 44 52 44 44 30 44 2 2 2 2 2 2 3735.6 3217 1223 3193 5163 6735;6736 6736 2 DQCEDIDECQHR Unmodified 1603.5991 0.59911827 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 2 0 1 27.086 27.086 3 8.7852E-05 5874 TMT1-1 99.498 88.864 23.415 21.598 13.799 22.83 20.922 30.317 22 22 15 22 22 29 1 1 1 1 1 1 3251.9 3218 1797 3194 5164 6737 6737 1 DQDNDVSSSNCAEK Unmodified 1567.6056 0.60564344 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 0 2 0 1 32.127 32.127 3 7.0257E-11 7828 TMT1-1 127.07 107.49 46.767 26.831 52.106 27.626 51.322 21.988 44 29 51 29 51 22 1 1 1 1 1 1 7145.9 3219 84 3195 5165 6738 6738 1 DQEFTVK Unmodified 865.41815 0.41814765 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 0 1 44.289 44.289 2 0.0037951 12090 TMT1-3 138.54 117.04 376.09 541.37 532 401.82 544.08 463.11 356 541 540 406 553 449 2 2 2 2 2 2 108250 3220 831 3196 5166 6739;6740 6740 2 DQEGQDVLLFIDNIFR Unmodified 1920.9581 0.95814177 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0.816 1 1 1 98.064 98.064 3 3.4848E-29 32504 TMT1-5 188.9 159.54 46.424 128.32 92.878 114.09 90.227 113.62 44 125 95 111 95 109 3 5 4 5 5 5 46781 3221 508 3197 5167;5168;5169 6741;6742;6743;6744;6745 6744 5 DQEVLLQTGR Unmodified 1157.6041 0.60405094 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 3 0 1 44.526 44.526 2 0.0011922 13092 TMT1-2 103.34 60.315 115.72 121.3 105.88 94.161 120.72 105.29 109 123 109 94 123 102 1 1 1 1 1 1 12985 3222 1264 3198 5170 6746 6746 1 DQFALAFHLISQK Unmodified 1516.8038 0.80381338 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 9 0 1 71.518 71.518 3 8.1212E-05 20232 TMT1-8 92.457 66.739 46.462 73.473 63.793 42.536 93.276 90.08 44 73 65 44 94 87 1 1 1 1 1 1 13807 3223 1098 3199 5171 6747 6747 1 DQFALAMYFIQQK Unmodified 1601.7912 0.79119978 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 9 0 1 83.848 83.848 2 2.7295E-05 25108 TMT1-8 97.911 61.952 23.331 28.92 21.692 5.8121 29.034 30.086 22 29 22 7 29 29 1 1 1 1 1 1 3043.7 3224 2835 3200 5172 6748 6748 1 DQFPEVYVPTVFENYIADIEVDGK Unmodified 2786.3327 0.33269327 556 P08134 RHOC Rho-related GTP-binding protein RhoC yes yes 0 0 0 0 0 5 0 1 97.039 97.039 4 0.0017184 32272 TMT1-4 43.696 33.813 23.38 29.057 13.338 23.144 5.7153 15.827 22 29 15 22 7 15 1 1 1 1 1 1 5750.1 3225 556 3201 5173 6749 6749 1 DQFPEVYVPTVFENYVADIEVDGK Unmodified 2772.317 0.31704321 1393 P61586 RHOA Transforming protein RhoA yes yes 0 0 0 0 0 5.5 0.5 1 1 94.201 94.201 4 2.2513E-05 31140 TMT1-4 63.63 50.691 77.328 146.2 44.31 98.154 103.54 82.325 73 143 44 94 106 80 3 3 2 3 3 3 38009 3226 1393 3202 5174;5175 6750;6751;6752 6750 3 DQGELER Unmodified 845.38791 0.38791015 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0 1 27.47 27.47 2 0.0077529 6007 TMT1-1 124.08 32.454 146.11 148.46 204.33 127.37 193.24 172.51 138 152 203 131 196 167 1 1 1 1 1 1 23276 3227 1019 3203 5176 6753 6753 1 DQGGELLSLR Unmodified 1086.5669 0.56693715 664 P12081-4;P12081;P12081-3;P12081-2;P49590-2;P49590 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 4 0 1 51.521 51.521 2 0.013438 14897 TMT1-3 79.311 8.4547 107.98 121.18 144.25 108.42 112.73 105.52 102 123 145 109 116 102 1 1 1 1 1 1 23794 3228 664 3204 5177 6754 6754 1 DQGSCGSCWAFGAVEAISDR Unmodified 2171.9001 0.90005132 544 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 0 4.5 0.5 1 1 69.431 69.431 3 1.5826E-17 21601 TMT1-4 117.38 106.4 61.568 56.49 64.024 58.512 56.665 68.739 58 58 65 58 59 66 2 2 2 2 2 2 16459 3229 544 3205 5178;5179 6755;6756 6756 2 DQGTYEDYVEGLR Unmodified 1543.6791 0.67906638 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 0 2.67 0.471 1 2 56.419 56.419 2;3 1.6034E-16 17781 TMT1-2 167.89 155.1 407.69 422.74 372.14 406.23 409.08 428.58 384 429 386 399 423 413 4 4 4 4 4 4 179410 3230 1356 3206 5180;5181;5182 6757;6758;6759;6760;6761 6760 5 DQHSFELDEK Unmodified 1246.5466 0.54659564 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 2.5 0.5 1 1 42.386 42.386 3 0.0001102 12220 TMT1-2 113.38 82.65 308.81 329.56 298.42 230.33 290.5 309.38 291 334 305 232 298 298 3 3 3 3 3 3 48899 3231 2007 3207 5183;5184 6762;6763;6764 6764 3 DQIIDSLKR Unmodified 1086.6033 0.60332266 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 1 6 0 1 48.331 48.331 3 0.038112 13540 TMT1-5 54.343 20.985 107.96 144.87 127.66 108.84 142.82 112.12 102 145 131 109 145 109 1 1 1 1 1 1 13206 3232 2029 3208 5185 6765 6765 1 DQIQDVEGR Unmodified 1058.4993 0.49925152 3041 Q9Y608-4;Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 0 2 0 1 36.026 36.026 2 0.00048354 9404 TMT1-1 136.52 80.257 61.351 72.076 87.301 49.373 62.049 106.96 58 73 87 51 65 102 1 1 1 1 1 1 10532 3233 3041 3209 5186 6766 6766 1 DQITAGNAAR Unmodified 1015.5047 0.50467125 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 3 0 1 29.383 29.383 2 0.00059058 7069 TMT1-2 112.71 68.594 61.684 49.258 50.674 27.874 42.662 60.611 58 51 51 29 44 58 1 1 1 1 1 1 9995.8 3234 843 3210 5187 6767 6767 1 DQIYDIFQK Unmodified 1168.5764 0.57643921 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 0 6 0 1 67.339 67.339 2 0.011187 20938 TMT1-5 87.298 47.253 77.126 101.38 116.31 61.366 146.07 81.112 73 102 116 65 145 80 1 1 1 1 1 1 10918 3235 1358 3211 5188 6768 6768 1 DQLIYNLLK Unmodified 1118.6336 0.63356015 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 7.67 0.471 1 2 72.571 72.571 2;3 0.00020543 22422 TMT1-7 145.72 50.625 778.89 1239.4 1132.4 923.49 1181.6 968.32 738 1232 1157 927 1202 940 5 5 5 5 5 5 189960 3236 385 3212 5189;5190;5191 6769;6770;6771;6772;6773 6771 5 DQLIYNLLKEEQTPQNK Unmodified 2073.0742 0.074234161 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 6.33 0.471 2 1 66.638 66.638 3;4 6.9365E-10 20148 TMT1-6 110.37 82.154 344.68 543.57 399.76 310.51 355.31 507.94 326 539 414 312 370 486 4 4 4 4 4 4 104860 3237 385 3213 5192;5193;5194 6774;6775;6776;6777 6777 4 DQLLLGPTYATPK Unmodified 1415.766 0.76603089 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 6.5 0.5 1 1 61.056 61.056 3 5.5195E-06 17911 TMT1-6 108.63 72.898 402.36 417.81 370.49 328.9 342.06 412.38 379 424 381 327 355 396 3 3 3 3 3 3 63282 3238 1312 3214 5195;5196 6778;6779;6780 6779 3 DQLQTFSEEHPVLLTEAPLNPR Unmodified 2533.2813 0.28126682 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 0 4.33 0.471 2 1 64.039 64.039 3;4 2.121E-25 19871 TMT1-3 114.04 99.265 46.325 111.95 54.275 58.665 79.436 75.551 44 109 59 58 81 73 2 2 2 2 2 2 24232 3239 1381 3215 5197;5198;5199 6781;6782;6783 6782 3 DQMQQQLNDYEQLLDVK Unmodified 2106.9892 0.9891839 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 4.5 0.5 1 1 75.849 75.849 3;4 7.2008E-08 24473 TMT1-3 100.35 84.411 61.442 63.693 79.192 72.661 69.904 90.747 58 65 80 72 73 87 2 2 2 2 2 2 17253 3240 816 3216 5200;5201 6784;6785 6784 2 DQNFVILEFPVEEQDR Unmodified 1976.948 0.94797101 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 3.5 0.5 1 1 75.86 75.86 2;3 7.7255E-07 24324 TMT1-3 98.817 89.068 38.242 42.588 35.027 43.818 58.132 45.683 36 43 36 43 59 44 1 2 1 2 2 1 69344 3241 740 3217 5202;5203 6786;6787 6787 2 DQNIFVQK Unmodified 990.51345 0.51344502 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 6 0 1 49.228 49.228 2 0.021783 13817 TMT1-5 87.696 67.367 254.03 264.99 181.16 186.88 182.81 244.23 239 268 191 184 191 234 1 1 1 1 1 1 25492 3242 1279 3218 5204 6788 6788 1 DQPPNSVEGLLNALR Unmodified 1621.8424 0.84238373 2751 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 0 6 0 1 73.165 73.165 3 1.2093E-07 23237 TMT1-5 106.6 66.851 38.049 65.901 41.458 44.986 33.755 53.403 36 65 44 44 36 51 1 1 1 1 1 1 9279.3 3243 2751 3219 5205 6789 6789 1 DQQEAALVDMVNDGVEDLR Oxidation (M) 2131.9692 0.96917674 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 1 0 0 2 0 1 65.504 65.504 3 1.7482E-05 20955 TMT1-1 78.132 64.958 15.979 10.448 10.696 11.181 10.857 3.9542 15 11 11 11 11 4 1 1 1 1 1 1 5281.6 3244 583 3220 5206 6790 6790 108 1 DQQEAALVDMVNDGVEDLR Unmodified 2115.9743 0.97426212 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 2 0 3 74.349 74.349 2;3 2.5126E-45 25261 TMT1-1 189.55 172.06 30.719 42.946 43.921 21.453 21.295 30.306 29 43 44 22 22 29 2 3 3 2 1 1 35231 3245 583 3220 5207;5208;5209 6791;6792;6793 6793 3 DQQPGTFLLR Unmodified 1173.6142 0.6142217 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 5 0 1 52.388 52.388 2 0.0045385 14946 TMT1-4 64.064 44.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3246 1091 3221 5210 6794 6794 1 DQQVLDVK Unmodified 943.49746 0.4974606 2847 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 0 4 0 1 45.766 45.766 2 0.0056216 12583 TMT1-3 116.3 65.426 91.915 146.12 117.55 141.52 122.96 220.35 87 145 123 138 131 210 1 1 1 1 1 1 11170 3247 2847 3222 5211 6795 6795 1 DQSAVVVQGLPEGVAFK Unmodified 1742.9203 0.9202997 1502 P78347-2;P78347-4;P78347-3;P78347;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 0 6 0 1 66.278 66.278 3 0.011947 20598 TMT1-5 48.112 30.623 38.247 43.788 26.857 38.184 34.874 29.919 36 44 29 37 36 29 1 1 1 1 1 1 5689.6 3248 1502 3223 5212 6796 6796 1 DQTDDQVTIDSALATQK Unmodified 1847.8749 0.87486565 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 56.948 56.948 3 5.1408E-25 17668 TMT1-1 152.32 127.52 238.27 296.34 279.34 177.1 275.45 209.6 225 298 283 182 278 204 3 3 3 3 3 3 77236 3249 1164 3224 5213;5214 6797;6798;6799 6797 3 DQVANSAFVER Unmodified 1234.5942 0.59421454 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 3 0.816 1 1 1 41.441 41.441 2 8.0534E-24 11820 TMT1-2 202.68 157.8 530.18 848.19 523.65 522.92 640.12 641.59 501 839 555 518 656 619 4 4 4 4 4 4 175150 3250 545 3225 5215;5216;5217 6800;6801;6802;6803 6801 4 DQVDIAVQELLQLK Unmodified 1610.8879 0.88793694 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 6 0 1 88.159 88.159 3 1.2351E-05 29056 TMT1-5 97.797 69.252 46.626 57.74 49.532 43.79 71.744 75.771 44 58 51 44 73 73 2 2 2 2 2 2 6750.2 3251 543 3226 5218 6804;6805 6804 2 DQVTAQEIFQDNHEDGPTAK Unmodified 2242.0138 0.013818748 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 3 0 1 51.184 51.184 4 1.7722E-13 15764 TMT1-2 106.86 102.91 46.258 119.31 59.258 82.602 69.447 90.76 44 116 65 80 73 87 1 1 1 1 1 1 11510 3252 676 3227 5219 6806 6806 1 DQVYPQYVIEYTEDK Unmodified 1888.8731 0.87307474 2086 Q7Z2W4;Q7Z2W4-4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 0 4 0 1 67.001 67.001 3 3.8879E-11 20957 TMT1-3 105.39 87.691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3253 2086 3228 5220 6807 6807 1 DQYLMWLTQK Unmodified 1324.6486 0.64855829 921 P27986;P27986-4;P27986-5;P27986-3;P27986-2 PIK3R1 Phosphatidylinositol 3-kinase regulatory subunit alpha yes no 0 0 0 0 0 8 0 1 73.147 73.147 3 0.0039263 22722 TMT1-7 52.928 28.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3254 921 3229 5221 6808 6808 1 DQYNLLK Unmodified 892.46543 0.46543219 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 6 0 1 50.537 50.537 2 0.0011269 14361 TMT1-5 96.492 39.314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3255 237 3230 5222 6809 6809 1 DQYSVIFESGDR Unmodified 1414.6365 0.63647328 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 3 0 1 55.921 55.921 2 0.00068604 17590 TMT1-2 96.334 75.432 46.598 73.851 40.62 52.122 63.791 52.546 44 73 44 51 65 51 1 1 1 1 1 1 9057.3 3256 1328 3231 5223 6810 6810 1 DRAEAEAR Unmodified 916.43626 0.43625733 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 0 0 1 1.5 0.5 1 1 16.239 16.239 3 0.002067 2739 TMT 1-phospho 111.82 21.18 55.954 84.224 82.476 44.785 88.817 64.624 53 84 83 47 89 63 3 3 3 3 3 3 12664 3257 1019;1020;1029 3232 5224;5225 6811;6812;6813 6811 3 DRDVTFSPATIENELIK Unmodified 1946.9949 0.99492121 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 4.5 0.5 1 1 67.104 67.104 3 9.4419E-10 20989 TMT1-3 111.01 84.859 138.5 219.94 159.59 137.59 198.23 226.73 131 218 166 138 203 218 3 3 3 3 3 3 41391 3258 1313 3233 5226;5227 6814;6815;6816 6814 3 DREDYVPYTGEK Unmodified 1470.6627 0.66268803 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 3 0 1 42.148 42.148 3 3.0445E-05 12152 TMT1-2 105.19 69.17 281.95 343.19 292.1 259.75 315.42 336.38 266 345 301 259 324 324 1 1 1 1 1 1 41389 3259 2788 3234 5228 6817 6817 1 DREEALHQFR Unmodified 1299.632 0.63199703 82 O00571-2;O00571;O15523-2;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 1 3 0 1 29.709 29.709 4 0.045091 7177 TMT1-2 47.844 30.613 53.957 80.47 60.524 105.65 60.56 75.024 51 80 65 101 65 72 1 1 1 1 1 1 12478 3260 82 3235 5229 6818 6818 1 DRELDLR Unmodified 915.47739 0.47739386 602 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 1 2 0 1 32.758 32.758 3 0.0058731 8093 TMT1-1 100.02 13.184 100.13 69.866 63.036 58.305 70.82 83.259 94 73 65 58 73 80 1 1 1 1 1 1 6609 3261 602 3236 5230 6819 6819 1 DREVGIPPEQSLETAK Unmodified 1767.9003 0.90029254 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 3.2 0.748 1 2 2 46.528 46.528 3;4 1.1254E-19 12871 TMT1-3 156.13 108.58 1838.9 2495.9 1888.2 1650.9 2011.3 2335.8 1736 2492 1960 1648 2072 2245 19 19 19 19 19 19 101910 3262 1379 3237 5231;5232;5233;5234;5235 6820;6821;6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832;6833;6834;6835;6836;6837;6838 6833 19 DRHPEEGVVAELQGFAVDK Unmodified 2095.0334 0.033431979 2395 Q96DZ9-4;Q96DZ9-5;Q96DZ9-3;Q96DZ9-6;Q96DZ9-2;Q96DZ9 CMTM5 CKLF-like MARVEL transmembrane domain-containing protein 5 yes no 0 0 0 0 1 4 0 2 59.457 59.457 3;4 4.1047E-24 17971 TMT1-3 141.31 113.33 496.44 477.5 557.41 413.91 401.53 668.65 468 489 561 416 424 638 3 3 3 3 3 3 191090 3263 2395 3238 5236;5237 6839;6840;6841 6841 3 DRIPVYSAFR Unmodified 1222.6459 0.64585618 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 1 7 0 1 46.735 46.735 3 0.004674 12210 TMT1-6 79.283 49.616 146.48 149.48 142.03 115.68 140.31 176.15 138 152 145 116 145 169 1 1 1 1 1 1 33715 3264 333 3239 5238 6842 6842 1 DRNDFWEGIK Unmodified 1278.5993 0.59929991 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 5.5 0.5 1 1 53.409 53.409 3 0.00074958 15340 TMT1-5 79.492 54.275 146.84 119.2 105.86 94.034 127.52 150.93 138 123 109 94 131 145 1 1 1 1 1 1 12350 3265 1960 3240 5239;5240 6843;6844 6844 2 DRPFFAGLVK Unmodified 1148.6342 0.63422886 846;724 P22392-2;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 1 9 0 1 56.747 56.747 3 0.0026803 14466 TMT1-8 75.229 31.421 269.22 455.83 351.8 299.51 336.44 493.55 255 451 364 299 351 472 1 1 1 1 1 1 46066 3266 846;724 3241 5241 6845 6845 1 DRPFFPGLVK Unmodified 1174.6499 0.64987892 846 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 1 9 0 1 56.11 56.11 3 0.001173 14211 TMT1-8 89.805 49.76 713.82 1147.8 1145.6 832.36 1104.1 1124 677 1142 1160 843 1129 1084 1 1 1 1 1 1 106360 3267 846 3242 5242 6846 6846 1 DRPQEADGIDSVIVVDNVPQVGPDR Unmodified 2689.3307 0.33073621 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 1 3 0 1 60.385 60.385 3 2.7392E-10 19361 TMT1-2 82.89 75.086 7.3084 22.667 14.833 0 15.156 15.558 7 22 15 0 15 15 1 1 1 0 1 1 7429.9 3268 1328 3243 5243 6847 6847 1 DRQHLPLIK Unmodified 1118.656 0.65602693 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 7.5 0.5 1 1 38.26 38.26 4 0.0038032 9026 TMT1-6 79.986 33.322 435.67 713.03 652.08 455.89 543.1 906.59 413 708 663 462 569 865 2 2 2 2 2 2 32371 3269 437 3244 5244;5245 6848;6849 6848 2 DRTDIQCLIPCAIDQDPYFR Unmodified 2495.1573 0.15732864 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 1 5 0 1 70.55 70.55 3 3.0706E-13 22048 TMT1-4 109.28 97.328 23.256 44.901 20.719 6.1412 14.617 23.035 22 44 22 7 15 22 1 1 1 1 1 1 8726.9 3270 860 3245 5246 6850 6850 1 DRYDSFIELQEK Unmodified 1541.7362 0.73618733 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 1 4 0 1 55.001 55.001 3 0.00029392 16245 TMT1-3 77.912 39.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3271 2740 3246 5247 6851 6851 1 DSAGDSDVVVQELK Unmodified 1460.6995 0.69946747 2748 Q9NUB1-3;Q9NUB1-2;Q9NUB1 ACSS1 Acetyl-coenzyme A synthetase 2-like, mitochondrial yes no 0 0 0 0 0 3 0 1 55.092 55.092 3 0.0081934 17268 TMT1-2 39.033 11.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3272 2748 3247 5248 6852 6852 1 DSAHGFLK Unmodified 873.43447 0.43446642 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6 0 1 38.483 38.483 3 0.012259 9587 TMT1-5 70.856 51.585 245.46 437.59 393.24 295.22 375.37 492.44 233 433 401 298 388 472 1 1 1 1 1 1 25283 3273 451 3248 5249 6853 6853 1 DSATGLSK Unmodified 777.38685 0.38684752 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 5 0 1 35.939 35.939 2 0.0099874 8431 TMT1-4 99.802 69.548 177.26 224.13 134.96 170.25 225.05 133.22 167 224 145 167 227 131 1 1 1 1 1 1 16904 3274 896 3249 5250 6854 6854 1 DSAYPEELSR Unmodified 1165.5251 0.52513192 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 2 0 1 40.896 40.896 2 0.0022821 11295 TMT1-1 99.855 64.344 46.512 72.532 56.217 43.825 48.708 76.428 44 72 58 44 51 73 1 1 1 1 1 1 12191 3275 539 3250 5251 6855 6855 1 DSCISPSEPETK Unmodified 1348.5817 0.58166052 2253 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L yes yes 0 0 0 0 0 3 0 1 39.694 39.694 3 0.0009919 11189 TMT1-2 58.04 50.508 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3276 2253 3251 5252 6856 6856 1 DSCPLDCK Unmodified 993.38957 0.38956641 1524 P84103-2;P84103 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 0 0 3 0.816 1 1 1 39.462 39.462 2 0.0013136 10042 TMT1-3 143.01 101.98 316.98 611.86 308.9 415.45 410.18 475.46 300 600 338 404 426 457 2 2 2 2 2 2 49707 3277 1524 3252 5253;5254;5255 6857;6858;6859 6859 3 DSDDYAQLCNIPVTGR Unmodified 1822.8156 0.81557663 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3 0 1 56.53 56.53 3 3.4997E-20 17819 TMT1-2 161.09 149.17 46.298 119.43 52.396 66.475 76.968 106.54 44 116 58 65 80 102 1 1 1 1 1 1 26019 3278 1797 3253 5256 6860 6860 1 DSDEADLVLAK Unmodified 1174.5717 0.57174776 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 0 2.5 0.5 1 1 56.493 56.493 3 0.00035917 17726 TMT1-2 67.776 43.485 38.17 51.126 33.724 44.186 42.718 37.157 36 51 36 43 44 36 1 1 1 1 1 1 2438.1 3279 1681 3254 5257;5258 6861;6862 6862 2 DSDIEQLR Unmodified 974.46689 0.46688876 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 2 0 1 40.07 40.07 2 0.01497 10978 TMT1-1 93.267 36.608 153.73 176.3 162.83 146.18 138.17 197.53 145 178 167 145 145 189 1 1 1 1 1 1 20619 3280 251 3255 5259 6863 6863 1 DSDIIEDVMVK Unmodified 1262.6064 0.60641871 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 3 0.816 1 1 1 68.637 68.637 2;3 4.5654E-07 22625 TMT1-2 132.32 105.43 199.32 360.67 279.34 289.08 248.79 348.94 189 356 291 284 262 334 6 6 6 6 6 6 34789 3281 333 3256 5260;5261;5262 6864;6865;6866;6867;6868;6869 6868 6 DSDLSHVQNK Unmodified 1141.5364 0.53636531 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 3.5 0.5 1 1 33.191 33.191 3 3.9057E-05 7617 TMT1-3 129.16 112.21 190.67 377.29 275.24 311.04 256.84 420.14 181 371 289 304 273 401 2 2 2 2 2 2 35476 3282 226;227 3257 5263;5264 6870;6871 6871 2 DSDVYITDK Unmodified 1054.4819 0.48187012 419 P0DSE1;P01848 TRAC T-cell receptor alpha chain C region yes no 0 0 0 0 0 3 0 1 46.735 46.735 2 0.00031306 13977 TMT1-2 94.692 39.016 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3283 419 3258 5265 6872 6872 1 DSDWPFCSDEDWNYK Unmodified 1962.7367 0.73665761 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 3.33 1.7 1 1 1 72.368 72.368 3 8.0854E-44 22938 TMT1-3 212.83 203.3 2102.1 2695.5 2383.8 1908.7 2423.4 2752.6 1985 2704 2441 1918 2491 2647 10 10 10 10 10 10 514270 3284 437 3259 5266;5267;5268 6873;6874;6875;6876;6877;6878;6879;6880;6881;6882 6875 10 DSEGCWVAYTLEQQDGMDR Unmodified 2258.9208 0.92084634 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 3 0 1 67.44 67.44 3 1.478E-09 22122 TMT1-2 92.474 83.068 15.824 29.444 20.611 30.224 12.996 38.005 15 29 22 29 15 36 1 1 1 1 1 1 7380.5 3285 485 3260 5269 6883 6883 1 DSEGTVSFLSDSEK Unmodified 1499.6627 0.66274761 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 3 0 1 56.106 56.106 2 8.018E-12 17668 TMT1-2 114.24 94.033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3286 322 3261 5270 6884 6884 1 DSFIGENSR Unmodified 1023.4621 0.46213773 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4;Q99661-2;Q99661 KIF2A;KIF2C Kinesin-like protein KIF2A;Kinesin-like protein KIF2C yes no 0 0 0 0 0 3 0 1 39.131 39.131 2 0.0011563 10958 TMT1-2 123.5 82.479 123.15 120.57 119.67 124.8 133.44 150.76 116 123 123 123 138 145 1 1 1 1 1 1 13423 3287 39 3262 5271 6885 6885 1 DSFPWEVPK Unmodified 1103.5288 0.52876073 973 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 0 0 0 6 0 1 64.333 64.333 3 0.044279 19804 TMT1-5 46.39 10.446 53.881 95.369 60.666 82.39 76.236 106.56 51 94 65 80 80 102 1 1 1 1 1 1 6433.5 3288 973 3263 5272 6886 6886 1 DSGACFSASEPDAVHVVLDR Unmodified 2130.964 0.96403178 2196 Q8NB37-3;Q8NB37 PDDC1 Parkinson disease 7 domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 56.607 56.607 3 0.0060933 17845 TMT1-2 45.784 28.503 38.175 58.697 26.358 29.32 42.852 53.143 36 58 29 29 44 51 1 1 1 1 1 1 10032 3289 2196 3264 5273 6887 6887 1 DSGGYYHPAR Unmodified 1121.489 0.48902118 1795 Q14761 PTPRCAP Protein tyrosine phosphatase receptor type C-associated protein yes yes 0 0 0 0 0 3 0 2 26.086 26.086 3 1.7267E-05 5759 TMT1-2 96.143 71.289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3290 1795 3265 5274;5275 6888;6889 6888 2 DSGITYLGIK Unmodified 1065.5706 0.57062555 1241 P51452;P51452-2 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 0 6.5 0.5 1 1 58.73 58.73 2 0.00044187 16988 TMT1-6 117.31 98.532 263.96 588.33 402.69 242.35 366.73 540.66 251 576 416 250 379 517 2 2 2 2 2 2 41394 3291 1241 3266 5276;5277 6890;6891 6891 2 DSGLFCVPLTALLEQDQR Unmodified 2061.0201 0.0200901 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 6.5 0.5 1 1 85.624 85.624 3 3.7446E-06 28096 TMT1-5 86.453 75.592 69.854 78.818 95.187 56.614 116.95 112.86 66 80 95 59 118 109 3 3 3 3 3 3 24165 3292 2172 3267 5278;5279 6892;6893;6894 6892 3 DSGPYSCSVNVQDK Unmodified 1554.662 0.6620361 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 0 4 0 1 44.031 44.031 3 4.2018E-17 11912 TMT1-3 148.08 135.94 146.39 198.88 115.22 116.6 176.71 211.36 138 198 123 116 181 203 1 1 1 1 1 1 34256 3293 2363 3268 5280 6895 6895 1 DSHGVAQVR Unmodified 967.48354 0.48354187 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 2.5 0.5 1 1 21.902 21.902 3 0.00010945 4068 TMT1-2 134.26 79.278 77.295 78.11 107.57 118.86 80.569 144.81 73 80 109 116 87 138 2 2 2 2 2 2 13545 3294 1427 3269 5281;5282 6896;6897 6897 2 DSHSLTTNIMEILR Unmodified 1628.8192 0.81920545 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 6 2.39 1 1 2 1 1 1 65.627 65.627 3 3.8273E-17 20223 TMT1-5 148.69 136.31 848.05 1059.8 842.2 750.66 1004.8 1139.7 800 1063 872 750 1031 1096 11 11 11 11 11 11 440290 3295 437 3270 5283;5284;5285;5286;5287;5288;5289 6898;6899;6900;6901;6902;6903;6904;6905;6906;6907;6908;6909 6902 12 DSHSLTTNIMEILR Oxidation (M) 1644.8141 0.81412007 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 1 0 0 5.5 0.5 1 1 57.346 57.346 3 0.00010963 16884 TMT1-4 68.283 41.134 46.441 57.226 81.018 42.08 62.934 90.946 44 58 80 44 65 87 1 1 1 1 1 1 23135 3296 437 3270 5290;5291 6910;6911 6910 47 2 DSIFSNLTGQLDYQGFEK Unmodified 2060.9691 0.96910039 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 6.5 0.5 1 1 78.219 78.219 3 1.8415E-20 25204 TMT1-5 141.6 116.81 130.8 219.93 191.44 152.07 199.42 203.25 124 218 196 153 204 196 3 3 3 3 3 3 46474 3297 1076 3271 5292;5293 6912;6913;6914 6912 3 DSIKLDDDSER Unmodified 1291.5892 0.58918874 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 1 2.5 0.5 1 1 38.639 38.639 3 0.0060496 10461 TMT1-1 73.655 47.19 208.35 199.26 160.52 161.02 228.31 233.34 196 203 167 160 233 225 2 2 2 2 2 2 17128 3298 2116 3272 5294;5295 6915;6916 6915 2 DSIVAELDR Unmodified 1016.5138 0.51383895 95 O14579;O14579-3 COPE Coatomer subunit epsilon yes no 0 0 0 0 0 3 0 1 52.848 52.848 2 0.0078976 16384 TMT1-2 62.582 32.507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3299 95 3273 5296 6917 6917 1 DSIVAELDREMSR Unmodified 1519.7301 0.73005609 95 O14579;O14579-3 COPE Coatomer subunit epsilon yes no 0 0 0 0 1 4 0 1 60.312 60.312 3 0.0003688 18344 TMT1-3 87.989 55.714 46.415 73.342 71.79 57.497 86.066 66.834 44 73 73 58 87 65 1 1 1 1 1 1 9257.7 3300 95 3274 5297 6918 6918 1 DSIVHQAGMLK Oxidation (M) 1213.6125 0.61250714 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 1 0 0 6 0 1 41.096 41.096 3 0.030476 10567 TMT1-5 60.691 34.752 138.2 230.97 201.66 149.8 229.63 209.85 131 229 206 152 233 203 1 1 1 1 1 1 18833 3301 129 3275 5298 6919 6919 19 1 DSIVQGFQWGTR Unmodified 1392.6786 0.67861287 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 7 0 1 61.88 61.88 3 9.5788E-05 18217 TMT1-6 98.942 84.268 38.156 43.533 42.474 52.297 48.612 67.903 36 44 44 51 51 65 1 1 1 1 1 1 6155.4 3302 1816 3276 5299 6920 6920 1 DSLAAQLEITLTK Unmodified 1401.7715 0.7715102 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 6 0 1 73.727 73.727 3 0.0007251 23501 TMT1-5 77.527 46.529 54.009 64.426 65.347 43.255 50.09 36.947 51 65 66 44 51 36 1 1 1 1 1 1 3381.1 3303 251 3277 5300 6921 6921 1 DSLAEVEEK Unmodified 1018.4819 0.48187012 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 2 0 1 47.48 47.48 2 0.001858 13921 TMT1-1 111.61 23.991 22.9 82.765 48.519 35.513 50.153 45.473 22 80 51 36 51 44 1 1 1 1 1 1 5385.4 3304 1924 3278 5301 6922 6922 1 DSLAWLSLVK Unmodified 1130.6336 0.63356015 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 9 0 1 78.392 78.392 2 0.0002659 22932 TMT1-8 125.97 64.376 61.702 56.862 41.223 59.764 62.377 83.5 58 58 44 58 65 80 1 1 1 1 1 1 7380.7 3305 2982 3279 5302 6923 6923 1 DSLDIEVK Unmodified 917.47058 0.47057715 2501 Q99961;Q99961-2;Q99962 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 yes no 0 0 0 0 0 3 1 1 1 53.856 53.856 2 0.00067092 15646 TMT1-3 114.89 25.946 38.295 35.287 26.006 68.723 41.04 53.195 36 36 29 65 44 51 1 1 1 1 1 1 3666.6 3306 2501 3280 5303;5304 6924;6925 6925 2 DSLIDSLT Unmodified 862.42838 0.42837799 1338 P56537-2;P56537 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 0 3 0 1 70.164 70.164 2 0.0098979 23118 TMT1-2 99.919 80.073 15.932 6 22.357 22.606 5.7401 15.826 15 7 22 22 7 15 1 1 1 1 1 1 3033.9 3307 1338 3281 5305 6926 6926 1 DSLIFLVDASK Unmodified 1206.6496 0.64960415 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 6.67 0.471 1 2 74.143 74.143 2;3 6.2852E-12 23670 TMT1-5 175.86 133.12 283.88 415.83 266.72 294.15 367.9 376.46 268 413 283 290 377 363 3 3 3 3 3 3 93784 3308 675 3282 5306;5307;5308 6927;6928;6929 6927 3 DSLIVQVTFDCDCACQAQAEPNSHR Unmodified 2920.2538 0.25382457 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 4 0 1 59.183 59.183 4 7.7137E-11 17944 TMT1-3 86.08 79.281 138.9 142.27 158.41 122.92 168.54 227.58 131 145 160 124 174 218 2 2 2 2 2 2 38408 3309 484 3283 5309 6930;6931 6931 2 DSLKAEAEAK Unmodified 1060.5401 0.5400537 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 1 4.5 0.5 1 1 40.436 40.436 3 0.00028264 10500 TMT1-3 106.01 57.723 932.83 1354.6 1130.2 971.25 1090.3 1493.3 882 1350 1164 969 1134 1430 2 2 2 2 2 2 58393 3310 2309 3284 5310;5311 6932;6933 6932 2 DSLLQDGEFSMDLR Unmodified 1624.7403 0.74028642 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 0 4.36 2.23 1 1 3 1 2 1 1 1 69.109 69.109 2;3 2.1339E-22 22856 TMT1-2 172.58 142.23 1127.5 1643.5 1205.2 1232.7 1424.4 1920.8 1065 1635 1261 1218 1479 1840 13 14 14 14 14 14 672450 3311 540 3285 5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322 6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950 6939 17 DSLLQDGEFSMDLR Oxidation (M) 1640.7352 0.73520105 540 P07737 PFN1 Profilin-1 yes yes 0 0 1 0 0 3.5 0.707 1 2 5 62.951 62.951 2;3 1.1507E-14 19650 TMT1-1 138.97 119.23 462.53 540.4 432.36 444.14 469.27 544.13 436 544 450 438 486 523 8 8 8 8 8 8 302680 3312 540 3285 5323;5324;5325;5326;5327;5328;5329;5330 6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961 6951 98 11 DSLPPSPLLFPGK Unmodified 1366.7497 0.74965254 2197 Q8NBF2 NHLRC2 NHL repeat-containing protein 2 yes yes 0 0 0 0 0 8 0 1 69.587 69.587 3 0.0012385 21313 TMT1-7 74.46 27.259 61.534 72.584 56.15 43.563 62.865 90.948 58 73 58 44 65 87 1 1 1 1 1 1 7359.2 3313 2197 3286 5331 6962 6962 1 DSLSDDGVDLK Unmodified 1162.5354 0.53536225 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 2.5 0.5 1 1 52.903 52.903 3 8.2551E-05 16272 TMT1-2 79.201 51.58 46.905 27.216 28.543 21.675 35.634 29.897 44 29 29 22 36 29 1 1 1 1 1 1 6444.6 3314 550 3287 5332;5333 6963;6964 6964 2 DSLSDDVVK Unmodified 976.47131 0.47130543 2057 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 0 0 2 0 1 47.275 47.275 2 0.0075477 13843 TMT1-1 63.184 7.4676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3315 2057 3288 5334 6965 6965 1 DSLTLVFVETK Unmodified 1250.6758 0.6758189 82 O00571-2;O00571 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 0 6 0 1 70.547 70.547 3 1.6339E-05 22248 TMT1-5 90.913 65.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3316 82 3289 5335 6966 6966 1 DSLVDIIGICK Unmodified 1231.6482 0.64822394 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 0 6 0 1 73.467 73.467 3 0.0007553 23393 TMT1-5 63.073 40.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3317 913 3290 5336 6967 6967 1 DSMFGIAVK Unmodified 966.48445 0.48445308 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7 0 1 61.937 61.937 2 0.00047343 18230 TMT1-6 136.8 105.57 138.09 241.46 210.98 96.569 124.55 234.16 131 239 213 102 131 223 1 1 1 1 1 1 26484 3318 856 3291 5337 6968 6968 1 DSNIPGSDYINANYIK Unmodified 1782.8424 0.84244331 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 62.427 62.427 3 8.9693E-09 18838 TMT1-4 110.56 80.826 260.78 344.38 242.42 234.26 258.8 313.48 246 344 254 232 268 301 2 2 2 2 2 2 53878 3319 936 3292 5338 6969;6970 6969 2 DSNNLCLHFNPR Unmodified 1485.6783 0.67829529 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 6 0 1 43.401 43.401 3 6.7099E-09 11522 TMT1-5 135.5 119.97 377.03 758.93 370.7 402.1 517.17 728.24 357 743 403 397 536 697 1 1 1 1 1 1 126650 3320 586 3293 5339 6971 6971 1 DSNTILLPSNPGDVTSMVAQAMGVYGALTK Unmodified 3049.51 0.51002248 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 9 0 1 101.02 101.02 4 5.9548E-06 31398 TMT1-8 47.429 36.74 7.3712 15.96 23.5 5.9801 14.368 37.966 7 15 22 7 15 36 1 1 1 1 1 2 2729.4 3321 2890 3294 5340 6972;6973 6972 2 DSNYHLLMSVQESLER Unmodified 1919.9047 0.90472599 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 62.233 62.233 3 3.0498E-08 18710 TMT1-4 85.982 70.594 23.164 36.011 43.723 36.085 34.955 60.831 22 36 44 36 37 58 1 1 1 1 1 1 5611.4 3322 387 3295 5341;5342 6974;6975 6975 2 DSPCQLEALK Unmodified 1159.5543 0.55432356 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 4.5 0.5 1 1 50.896 50.896 3 3.3335E-05 14312 TMT1-4 131.82 100.95 377.57 415.95 390.71 317.7 408.38 506.42 356 421 399 319 421 486 3 3 3 3 3 3 39325 3323 681 3296 5343;5344 6976;6977;6978 6978 3 DSPLFDFIESCLR Unmodified 1597.7446 0.74464352 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 6 0 1 90.469 90.469 3 0.00043746 29779 TMT1-5 79.466 67.852 7.3494 15.226 14.258 22.931 14.101 15.588 7 15 15 22 15 15 1 1 1 1 1 1 4381.7 3324 3047 3297 5345 6979 6979 1 DSPSVWAAVPGK Unmodified 1212.6139 0.61388734 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 0 6 2.72 2 3 2 1 2 57.875 57.875 2;3;4 9.9407E-19 17067 TMT1-5 188.87 153.99 11396 15841 14123 10858 7311.5 16391 10773 15832 14431 10830 8005 15572 13 13 13 13 13 13 3478300 3325 540 3298 5346;5347;5348;5349;5350;5351;5352;5353;5354;5355 6980;6981;6982;6983;6984;6985;6986;6987;6988;6989;6990;6991;6992 6982 13 DSPVLIDFFEDTER Unmodified 1681.7835 0.78353145 466 P04196 HRG Histidine-rich glycoprotein yes yes 0 0 0 0 0 3.5 0.5 1 1 80.054 80.054 3 1.5914E-05 25978 TMT1-3 95.854 89.416 39.115 66.889 41.719 37.673 42.688 46.752 37 66 44 37 44 45 3 3 3 2 3 3 8866 3326 466 3299 5356;5357 6993;6994;6995 6995 3 DSQAALPK Unmodified 828.43413 0.43413207 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 4.5 0.5 1 1 37.826 37.826 2 0.0028666 9158 TMT1-4 134.48 117.09 310.7 607.53 466.24 387.63 518.74 519.26 295 598 482 389 530 501 2 2 2 2 2 2 51680 3327 1897 3300 5358;5359 6996;6997 6997 2 DSQDAGGFGPEDR Unmodified 1349.5484 0.54838655 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 37.463 37.463 2 1.3831E-10 9903 TMT1-1 140.53 111.11 30.678 35.505 43.715 36.095 34.421 45.922 29 36 44 36 36 44 1 1 1 1 1 1 6970.1 3328 1833 3301 5360 6998 6998 1 DSQDGSSYR Unmodified 1013.405 0.40501678 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 2 0 1 23.046 23.046 2 0.00033149 4300 TMT1-1 140.75 132.92 15.856 21.979 21.551 19.177 16.221 19.791 15 22 22 19 17 19 1 1 1 1 1 1 3816.6 3329 1801 3302 5361 6999 6999 1 DSQEEEKTEALTSAK Unmodified 1664.7741 0.77408897 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 2.57 1.18 2 1 2 2 44.806 44.806 3;4 1.3249E-22 12044 TMT1-3 174.95 147.1 6746.5 7280.6 8703.6 5485.3 8068.9 8985.3 6370 7407 8705 5632 8250 8645 10 10 10 10 10 10 1307300 + 3330 506 3303 5362;5363;5364;5365;5366;5367;5368 7000;7001;7002;7003;7004;7005;7006;7007;7008;7009 7008 10 DSQICELK Unmodified 991.46445 0.46444592 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 0 4 0 1 44.552 44.552 2 0.0034465 12094 TMT1-3 131.44 69.44 188.19 422.9 293.26 282.55 377.47 357 179 414 307 281 385 345 1 1 1 1 1 1 58156 3331 1313 3304 5369 7010 7010 1 DSQPSLDLASATSGDK Unmodified 1590.7373 0.73730954 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 4 0 1 52.785 52.785 3 8.526E-07 15338 TMT1-3 98.227 69.93 99.369 145.45 127.67 108.73 148.83 150.32 94 145 131 109 152 145 1 1 1 1 1 1 21912 3332 1960 3305 5370 7011 7011 1 DSQTQAILTK Unmodified 1103.5823 0.58225287 1670 Q13098-5;Q13098;Q13098-7;Q13098-6 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 0 5 0 1 45.44 45.44 2 0.00066348 12228 TMT1-4 110.52 82.123 61.464 87.5 55.262 43.429 72.824 44.826 58 87 58 44 73 44 1 1 1 1 1 1 6629.5 3333 1670 3306 5371 7012 7012 1 DSQVVQVVLDGLK Unmodified 1398.7718 0.77184455 78 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 0 6 0 1 76.006 76.006 3 0.00013064 24382 TMT1-5 90.759 58.696 22.815 82.529 62.988 51.069 48.925 60.432 22 80 65 51 51 58 1 1 1 1 1 1 6949.8 3334 78 3307 5372 7013 7013 1 DSSGNLHGYVAEGGAK Unmodified 1560.7168 0.71684887 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 4 0 1 37.748 37.748 3 9.578E-09 9413 TMT1-3 110.12 104.54 99.392 161.7 110.06 117.83 127.75 112.55 94 160 116 116 131 109 1 1 1 1 1 1 18034 3335 2157 3308 5373 7014 7014 1 DSSGQHVDVSPTSQR Unmodified 1598.7285 0.72847619 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 4 1 1 1 27.533 27.533 3 0.00081081 6314 TMT1-2 70.638 67.144 37.823 72.827 73.587 18.84 43.59 45.66 36 72 73 22 44 44 2 2 2 2 2 2 8074.5 3336 2492 3309 5374;5375 7015;7016 7015 2 DSSLFDIFTLSCNLLK Unmodified 1871.9339 0.93390085 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 9 0 2 97.897 97.897 3;4 7.1145E-17 30194 TMT1-8 127.3 88.155 55.056 80.47 56.094 59.237 101.4 74.925 52 80 59 59 102 73 3 3 3 3 3 3 11428 3337 2876 3310 5376;5377 7017;7018;7019 7017 3 DSSPHFQAEQR Unmodified 1300.5796 0.5796271 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 27.218 27.218 3 0.0012837 6207 TMT1-2 83.775 59.52 61.445 72.336 71.362 42.483 72.098 67.233 58 73 72 44 73 65 2 2 2 2 2 2 6134.4 3338 2859 3311 5378 7020;7021 7020 2 DSSQSPSQVDQFCK Unmodified 1611.6835 0.68349983 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 4 0 1 44.376 44.376 3 1.4444E-11 12066 TMT1-3 129.04 109.3 200.79 287.25 273.77 245.65 251.17 307.3 190 287 280 244 261 295 1 1 1 1 1 1 32950 3339 1734 3312 5379 7022 7022 1 DSSTCPGDYVLSVSENSR Unmodified 1971.848 0.84799897 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 3.5 0.5 1 1 54.82 54.82 3 3.1081E-14 17148 TMT1-2 121.41 117.44 200.63 214.31 182.45 183.51 241.42 247.89 189 217 189 182 247 239 3 3 3 3 3 3 53517 3340 1127 3313 5380;5381 7023;7024;7025 7023 3 DSTGHVGFIFK Unmodified 1206.6033 0.60332266 80 O00560-3;O00560;O00560-2 SDCBP Syntenin-1 yes no 0 0 0 0 0 7 0 1 52.187 52.187 3 0.0011985 14399 TMT1-6 84.658 72.298 130.52 159.61 109.7 125.28 139.43 188.97 123 160 116 123 145 181 1 1 1 1 1 1 10525 3341 80 3314 5382 7026 7026 1 DSTLIMQLLR Unmodified 1188.6536 0.65364367 1471;1422;1411;1588;909;984;985 P27348;P31946;P31946-2;P63104;P63104-2;P31947-2;P31947;P61981;P62258;P62258-2;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 0 6.5 3.2 1 2 1 75.263 75.263 2;3 2.9892E-50 23575 TMT1-7 232.46 188.64 827.13 1137.6 1045.3 801.25 1158.1 1175.8 782 1138 1066 810 1181 1134 5 5 5 5 5 5 1111100 3342 909;984;1471;985;1411;1422;1588 3315 5383;5384;5385;5386 7027;7028;7029;7030;7031 7029 5 DSTVAVVVYDITNLNSFQQTSK Unmodified 2428.2122 0.21218421 2733 Q9NRW1;Q9NRW1-2 RAB6B Ras-related protein Rab-6B yes no 0 0 0 0 0 6.67 0.471 1 2 86.798 86.798 3;4 1.122E-31 27903 TMT1-6 124.94 68.888 107.7 152.79 163.78 161.65 184.34 172.76 102 153 167 160 189 167 2 2 2 2 2 2 34150 3343 2733 3316 5387;5388;5389 7032;7033;7034 7034 3 DSTVAVVVYDITNVNSFQQTTK Unmodified 2428.2122 0.21218421 810 P20340 RAB6A Ras-related protein Rab-6A yes yes 0 0 0 0 0 6 0 1 81.8 81.8 3 1.0925E-15 26646 TMT1-5 94.707 50.602 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3344 810 3317 5390 7035 7035 1 DSTYSLSSTLTLSK Unmodified 1501.7512 0.75116869 418 P01834;P0DOX7 IGKC Ig kappa chain C region yes no 0 0 0 0 0 6.5 0.5 1 1 61.915 61.915 3 1.9628E-17 18250 TMT1-6 151.74 112.07 282.52 570.7 364.1 280.15 397.2 394.81 268 560 381 283 405 381 2 2 2 2 2 2 58926 3345 418 3318 5391;5392 7036;7037 7037 2 DSVLTSK Unmodified 748.39668 0.39668393 314 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 0 5 0 1 40.783 40.783 2 0.010017 10348 TMT1-4 109.86 32.188 207.29 323.68 232.23 229.62 189 402.88 196 321 243 226 204 383 1 1 1 1 1 1 18517 3346 314 3319 5393 7038 7038 1 DSVTISVDGVVYYR Unmodified 1571.7831 0.78313752 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 4 0 3 64.285 64.285 2;3 1.627E-16 19923 TMT1-3 134.75 96.668 30.567 51.385 48.939 67.478 34.575 29.927 29 51 51 65 37 29 1 1 1 1 1 1 4369.4 3347 906 3320 5394;5395;5396 7039;7040;7041 7041 3 DSVVAGFQWATK Unmodified 1307.651 0.65100113 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 8 0 1 65.245 65.245 3 5.6956E-08 19572 TMT1-7 125.46 105.35 200.64 208.95 184.91 135.56 226.28 204.61 189 212 189 138 229 198 1 1 1 1 1 1 36227 3348 685 3321 5397 7042 7042 1 DSYESYGNSR Unmodified 1176.4683 0.46834532 1056 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 0 2 0 1 32.302 32.302 2 8.3008E-05 7910 TMT1-1 95.502 83.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3349 1056 3322 5398 7043 7043 1 DSYGGPPR Unmodified 847.38243 0.38243085 1056 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 0 3 0 1 28.596 28.596 2 0.012741 6726 TMT1-2 96.19 52.074 54.177 49.781 49.623 51.605 62.752 83.489 51 51 51 51 65 80 1 1 1 1 1 1 13625 3350 1056 3323 5399 7044 7044 1 DSYLILETLPTEYDSR Unmodified 1913.9258 0.92583859 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 0 3.67 0.471 1 2 74.602 74.602 2;3 2.0561E-19 23905 TMT1-3 160.22 148.95 109.36 91.762 116.27 95.741 61.913 115.49 103 95 117 95 66 110 4 4 4 4 3 4 36476 3351 769 3324 5400;5401;5402 7045;7046;7047;7048 7048 4 DSYVGDEAQSK Unmodified 1197.515 0.51496116 1357;1479;1488 P60709;P63261;P68032;P63267;P62736;P68133 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle no no 0 0 0 0 0 4.12 2.23 1 3 4 3 1 1 1 1 1 38.953 38.953 2;3;4 2.2002E-32 10795 TMT1-2 208.56 188.27 51766 70393 65095 46630 68697 71931 48936 70462 66226 47394 70085 69316 27 27 27 27 27 27 10761000 3352 1357;1479;1488 3325 5403;5404;5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415;5416;5417;5418 7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077 7062 29 DSYVGDEAQSKR Unmodified 1353.6161 0.61607219 1357;1479;1488 P60709;P63261;P68032;P63267;P62736;P68133 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle no no 0 0 0 0 1 4.46 2.34 1 2 2 3 1 1 1 1 1 33.216 33.216 2;3;4 3.7522E-19 8351 TMT1-1 191.55 166.73 26784 38644 24070 20367 14718 45253 25277 38395 25352 20200 16451 42845 23 23 23 23 23 23 3907500 3353 1357;1479;1488 3326 5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431 7078;7079;7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102 7085 25 DTAAWTVGR Unmodified 975.47739 0.47739386 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 5.5 0.5 1 1 43.337 43.337 2 0.0042568 11468 TMT1-5 68.846 25.628 115.03 191.69 162.12 145.76 162.58 157.39 109 190 167 145 167 152 1 1 1 1 1 1 20523 3354 1803 3327 5432;5433 7103;7104 7104 2 DTAEGVSQELISAGLVDGR Unmodified 1915.9487 0.9486993 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 3 0 2 68.247 68.247 3 5.1119E-38 22374 TMT1-2 157.54 131.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3355 367 3328 5434;5435 7105;7106 7105 2 DTAQQGVVNFPYDDFIQCVMSV Unmodified 2532.1301 0.13011083 966 P30626;P30626-2 SRI Sorcin yes no 0 0 0 0 0 5.5 0.5 1 1 102 102 3 0.0036199 33692 TMT1-5 43.497 24.453 15.977 10.731 18.438 7.0423 14.722 23.032 15 11 18 7 15 22 2 2 3 1 2 3 4146.7 3356 966 3329 5436;5437 7107;7108;7109 7109 3 DTDAAVGDNIGYITFVLFPR Unmodified 2183.0899 0.089884225 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 6.4 0.49 3 2 91.166 91.166 3;4 5.08E-31 30024 TMT1-5 128.14 112.75 100.8 99.945 106.83 103.3 96.733 151.81 95 102 109 102 102 145 5 5 5 5 5 5 44697 3357 129 3330 5438;5439;5440;5441;5442 7110;7111;7112;7113;7114;7115;7116;7117 7111 8 DTDDVPMILVGNK Unmodified 1415.6966 0.6966307 1384 P61224;P61224-3;A6NIZ1;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 0 5 0 1 66.467 66.467 3 9.4112E-05 20421 TMT1-4 92.925 73.726 77.121 124.03 97.92 103.57 110.83 167.4 73 123 102 102 116 160 1 1 1 1 1 1 19997 3358 1384 3331 5443 7118 7118 1 DTDFEHR Unmodified 918.38316 0.38315913 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 2 0 1 26.894 26.894 3 0.0036771 5747 TMT1-1 98.418 83.48 99.3 169 119.33 94.3 128.83 112.52 94 167 124 95 131 109 2 2 2 2 2 2 4182 3359 765 3332 5444 7119;7120 7119 2 DTDIVDEAIYYFK Unmodified 1590.7454 0.74535503 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 4.5 0.5 1 1 86.077 86.077 3 6.7851E-11 28429 TMT1-3 132.56 104.83 292.03 436.71 321.54 394.64 488.65 350.63 276 434 339 387 496 342 3 3 3 3 3 3 73381 3360 130 3333 5445;5446 7121;7122;7123 7122 3 DTDMDGVGDQCDNCPLEHNPDQLDSDSDR Unmodified 3319.2572 0.25719121 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 2 0 1 50.011 50.011 4 9.973E-19 14889 TMT1-1 102.6 100.15 53.47 141.71 90.427 80.61 76.611 98.018 51 138 95 80 80 94 2 2 2 2 2 2 64559 + 3361 32;554 3334 5447 7124;7125 7124 2 DTDPDSKPFSLQETYEAK Unmodified 2069.9429 0.94294522 1752;2757 Q14141-2;Q14141-4;Q14141;Q9NVA2 SEPT6;SEPT11 Septin-6;Septin-11 no no 0 0 0 0 1 4 0 1 55.417 55.417 4 0.00085082 16426 TMT1-3 62.203 46.08 99.363 145.43 128.75 84.47 156.71 197 94 145 131 87 160 189 1 1 1 1 1 1 16800 3362 1752;2757 3335 5448 7126 7126 1 DTDSEEEIR Unmodified 1092.4571 0.45711193 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 0 1 0 1 30.347 30.347 2 1.8889E-05 6666 TMT 1-phospho 154.49 105.93 31.427 83.098 57.838 67.787 48.046 63.655 30 81 61 66 51 61 1 1 1 1 1 1 5787.1 3363 621 3336 5449 7127 7127 1 DTDSEEEIREAFR Unmodified 1595.7063 0.70634376 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 1 2 0 1 47.808 47.808 3 1.0923E-21 14069 TMT1-1 186.16 142.48 894.24 1378.6 743.72 777.99 909.71 1069.9 844 1364 800 768 939 1028 1 1 1 1 1 1 101690 3364 621 3337 5450 7128 7128 1 DTEEEDFHVDQVTTVK Unmodified 1890.8483 0.84831655 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 2 0 1 50.981 50.981 3 0.0034251 15304 TMT1-1 42.947 30.284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3365 407 3338 5451 7129 7129 1 DTETVYSEVR Unmodified 1197.5513 0.55134667 740 P16284-3;P16284-2;P16284;P16284-6 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 2 0 1 41.098 41.098 2 1.2705E-06 11373 TMT1-1 162.88 133.73 92.249 100.64 99.965 87.448 89.599 137.09 87 102 102 87 94 131 1 1 1 1 1 1 22552 3366 740 3339 5452 7130 7130 1 DTEVLLVGLEPGTR Unmodified 1497.8039 0.80387296 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 4 0 1 66.698 66.698 3 0.0001798 20789 TMT1-3 79.614 61.541 54.167 42.2 57.649 51.673 33.705 45.942 51 44 58 51 36 44 1 1 1 1 1 1 23432 3367 1658 3340 5453 7131 7131 1 DTFYIFNHVDIK Unmodified 1510.7456 0.7456298 2493 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 0 7 0 1 65.073 65.073 3 0.00080761 19440 TMT1-6 78.964 50.332 122.63 213.04 127.58 187.2 160.92 180.89 116 210 138 181 168 174 1 1 1 1 1 1 21318 3368 2493 3341 5454 7132 7132 1 DTGAFLLTTTER Unmodified 1323.667 0.66704513 2080 Q7L591;Q7L591-3 DOK3 Docking protein 3 yes no 0 0 0 0 0 5 0 1 57.097 57.097 2 2.9291E-08 16735 TMT1-4 137.78 88.335 61.433 94.969 54.133 58.703 77.875 90.52 58 94 58 58 80 87 1 1 1 1 1 1 24079 3369 2080 3342 5455 7133 7133 1 DTGIFLDLMHLK Unmodified 1401.7326 0.73262227 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 7.5 0.5 1 1 76.439 76.439 3 1.9625E-08 23933 TMT1-7 128.67 113.14 183.3 415.95 219.79 314.52 305.72 393.16 174 406 240 305 319 377 4 4 4 4 4 4 54455 3370 675 3343 5456;5457 7134;7135;7136;7137 7136 4 DTGKTPVEPEVAIHR Unmodified 1647.858 0.8580338 1359 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 1 4 0 1 38.447 38.447 4 2.0778E-10 9694 TMT1-3 117.48 98.273 208.49 314.24 219.35 239.94 204.26 340.62 197 312 231 235 217 325 1 1 1 1 1 1 28194 3371 1359 3344 5458 7138 7138 1 DTHDQLSEPSEVR Unmodified 1511.6852 0.68521439 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 32.573 32.573 3 8.6191E-12 8001 TMT1-1 149.02 127.08 30.625 59.102 32.575 60.092 72.351 36.311 29 58 36 58 73 36 1 1 1 1 1 1 13869 3372 1833 3345 5459 7139 7139 1 DTILHDNLK Unmodified 1067.5611 0.56112349 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 4.5 0.5 1 1 43.539 43.539 3 0.00063428 11352 TMT1-4 73.067 45.952 84.617 115.92 107.36 71.799 84.602 90.328 80 116 109 73 87 87 1 1 1 1 1 1 6752.9 3373 1773 3346 5460;5461 7140;7141 7141 2 DTILQLNLK Unmodified 1056.6179 0.61791009 1211 P50148;P29992 GNAQ;GNA11 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11 yes no 0 0 0 0 0 7 0 1 64.765 64.765 3 0.00033118 19306 TMT1-6 114.89 48.637 123 128.79 137.58 75.969 173.89 134.68 116 131 138 80 174 131 1 1 1 1 1 1 30334 3374 1211 3347 5462 7142 7142 1 DTIQHQQGEAVWVSEGK Unmodified 1910.9123 0.91225421 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 4 0 2 45.753 45.753 3;4 8.9379E-25 12590 TMT1-3 150.45 133.87 169.34 232.14 197.01 176.27 173.67 219.97 160 232 203 175 181 211 2 2 2 2 2 2 26547 3375 2852 3348 5463;5464 7143;7144 7144 2 DTLENTIGHR Unmodified 1154.568 0.56799978 1088 P42126;P42126-2 ECI1 Enoyl-CoA delta isomerase 1, mitochondrial yes no 0 0 0 0 0 3 0 1 35.61 35.61 3 8.2839E-05 9618 TMT1-2 118.03 103.83 68.605 117.26 92.17 72.706 84.523 91.396 65 116 95 73 87 88 2 2 2 2 2 2 14459 3376 1088 3349 5465 7145;7146 7146 2 DTLGLFLR Unmodified 933.52837 0.5283668 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 8 0 1 65.86 65.86 2 0.022815 19832 TMT1-7 86.953 26.305 37.976 81.888 40.174 52.287 56.454 52.755 36 80 44 51 58 51 1 1 1 1 1 1 9740.4 3377 293 3350 5466 7147 7147 1 DTLQSELVGQLYK Unmodified 1492.7773 0.77732386 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 0 1 67.404 67.404 3 0.00012787 20788 TMT1-4 90.861 61.053 99.925 84.392 86.036 56.82 76.899 121.46 94 87 87 58 80 116 1 1 1 1 1 1 27662 3378 68 3351 5467 7148 7148 1 DTLVQGLNEAGDDLEAVAK Unmodified 1956.964 0.96401501 3055 Q9Y6E2;Q9Y6E2-2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 74.36 74.36 3 1.1454E-06 24799 TMT1-2 82.765 72.708 23.415 21.599 13.793 22.964 13.843 23.057 22 22 15 22 15 22 1 1 1 1 1 1 3031.5 3379 3055 3352 5468 7149 7149 1 DTLWHLFNTLQR Unmodified 1542.7943 0.79431133 2092 Q7Z434;Q7Z434-2;Q7Z434-5 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 0 9 0 1 71.273 71.273 2 0.0017594 20196 TMT1-8 87.184 30.455 30.919 13.51 21.842 22.35 20.944 30.316 29 15 22 22 22 29 1 1 1 1 1 1 4340.4 3380 2092 3353 5469 7150 7150 1 DTLYEAVR Unmodified 965.48181 0.48181054 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 0 3 0 1 44.835 44.835 2 1.1843E-08 13262 TMT1-2 178.87 93.055 243.23 361.77 290.96 191.81 269.73 417.64 230 360 298 196 280 399 1 1 1 1 1 1 96749 3381 1457 3354 5470 7151 7151 1 DTNGSQFFITTVK Unmodified 1456.7198 0.71980898 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 7 0 1 61.598 61.598 3 0.00027468 18173 TMT1-6 85.457 50.773 176.78 207.67 230.03 171.62 257.94 209.04 167 210 232 174 261 203 2 2 2 2 2 2 30684 3382 858 3355 5471 7152;7153 7153 2 DTPDEPWAFPAR Unmodified 1400.6361 0.63607935 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 58.5 58.5 2 3.9337E-07 17606 TMT1-3 123.79 92.607 77.309 101.89 85.097 56.881 76.639 128.93 73 102 87 58 80 123 1 1 1 1 1 1 19715 3383 2071 3356 5472 7154 7154 1 DTPENNPDTPFDFTPENYK Unmodified 2239.9546 0.95457253 791 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 0 0 0 4 0 1 65.363 65.363 3 0.00050058 20310 TMT1-3 49.34 41.537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3384 791 3357 5473 7155 7155 1 DTPGHGSGWAETPR Unmodified 1466.6539 0.65385468 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 3 0 1 32.503 32.503 3 7.265E-07 8337 TMT1-2 91.076 73.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3385 286 3358 5474 7156 7156 1 DTPTQEDWLVSVLPEGSR Unmodified 2027.98 0.97999942 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 4 0 2 73.922 73.922 3 9.0866E-11 23609 TMT1-3 89.468 66.461 61.326 87.115 78.815 49.583 77.744 106.51 58 87 80 51 80 102 2 2 2 2 2 2 18768 3386 2717 3359 5475;5476 7157;7158;7159 7159 3 DTQEVPLEK Unmodified 1057.5292 0.52915466 2101 Q9Y5A9-2;Q9BYJ9;Q9Y5A9;Q7Z739 YTHDF2;YTHDF1;YTHDF3 YTH domain-containing family protein 2;YTH domain-containing family protein 1;YTH domain-containing family protein 3 yes no 0 0 0 0 0 3 0 1 45.022 45.022 2 0.0014978 13298 TMT1-2 80.763 31.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3387 2101 3360 5477 7160 7160 1 DTQLQQIVDK Unmodified 1186.6194 0.61936665 1470 P63098 PPP3R1 Calcineurin subunit B type 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 53.841 53.841 2 0.00080073 15813 TMT1-3 106.4 51.418 238.66 296.35 213.23 252.25 208.41 233.9 225 297 225 246 218 225 2 2 2 2 2 2 28255 3388 1470 3361 5478;5479 7161;7162 7161 2 DTQSGSLLFIGR Unmodified 1292.6725 0.67246486 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 6 0 1 59.252 59.252 2 0.017982 17761 TMT1-5 67.456 43.302 61.431 103.6 47.083 35.312 65.37 29.049 58 102 51 36 65 29 1 1 1 1 1 1 7481.4 3389 1223 3362 5480 7163 7163 1 DTSASAVAVGLK Unmodified 1117.5979 0.59790293 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 6 0 1 49.517 49.517 2 1.2411E-18 13948 TMT1-5 187.97 123.14 145.73 262.89 171.1 184.94 143.06 277.34 138 259 181 181 154 264 1 1 1 1 1 1 31737 3390 1076 3363 5481 7164 7164 1 DTSEDIEELVEPVAAHGPK Unmodified 2034.9746 0.9745797 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 2.5 0.5 1 1 63.302 63.302 3;4 1.4222E-13 20421 TMT1-2 113.11 109.61 83.783 116.66 66.486 89.695 76.193 98.03 79 116 72 87 80 94 2 2 2 2 2 2 24373 3391 2465 3364 5482;5483 7165;7166 7166 2 DTSLASFIPAVNDLTSDLFR Unmodified 2181.0954 0.095363533 2383 Q96CS2-2;Q96CS2 HAUS1 HAUS augmin-like complex subunit 1 yes no 0 0 0 0 0 7 0 1 97.748 97.748 3 1.2832E-05 31714 TMT1-6 57.745 37.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3392 2383 3365 5484 7167 7167 1 DTSLYRPALEELR Unmodified 1561.81 0.81002097 1683 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 0 0 0 0 1 4 0 1 51.972 51.972 3 8.7845E-05 15044 TMT1-3 98.942 47.656 53.912 87.899 61.855 65.757 85.136 82.851 51 87 65 65 87 80 1 1 1 1 1 1 11497 3393 1683 3366 5485 7168 7168 1 DTSNDPGQLLR Unmodified 1214.5891 0.58912916 2371 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 0 3 0 1 44.317 44.317 2 0.0003752 13036 TMT1-2 103.87 67.316 85.048 62.079 80.539 41.921 72.893 44.824 80 65 80 44 73 44 1 1 1 1 1 1 8516 3394 2371 3367 5486 7169 7169 1 DTSYLFITGPDVVK Unmodified 1553.7977 0.79772495 491 P05166;P05166-2 PCCB Propionyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 6 0 1 71.002 71.002 3 0.00098422 22436 TMT1-5 71.879 52.04 54.152 57.268 47.427 90.818 76.911 75.623 51 58 51 87 80 73 1 1 1 1 1 1 4898.3 3395 491 3368 5487 7170 7170 1 DTTILHLSENLLYTFSLATLMPYTR Unmodified 2912.4994 0.49938144 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 9 0 1 104.78 104.78 4 4.8054E-05 32705 TMT1-8 52.79 38.318 14.798 6.6862 31.984 0 22.778 14.274 14 7 30 0 22 14 2 1 2 0 1 2 2064.3 3396 535 3369 5488 7171;7172 7171 2 DTTINEIEDTFR Unmodified 1452.6733 0.67325272 1911 Q16864;Q16864-2 ATP6V1F V-type proton ATPase subunit F yes no 0 0 0 0 0 2 0 1 65.103 65.103 2 3.5829E-08 20802 TMT1-1 134.98 118.03 23.356 45.179 3.7017 23.432 20.894 30.318 22 44 7 22 22 29 1 1 1 1 1 1 8293.3 3397 1911 3370 5489 7173 7173 1 DTTLNWK Unmodified 876.43413 0.43413207 871 P23919-2;P23919 DTYMK Thymidylate kinase yes no 0 0 0 0 0 6 0 1 50.065 50.065 2 0.0064134 14174 TMT1-5 79.469 32.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3398 871 3371 5490 7174 7174 1 DTVATQLSEAVDATR Unmodified 1575.774 0.77402939 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 0 3 0 1 58.978 58.978 3 1.3481E-19 18772 TMT1-2 164.7 116.51 61.717 72.015 25.78 21.692 43.459 45.664 58 72 29 22 44 44 1 1 1 1 1 1 11331 3399 231 3372 5491 7175 7175 1 DTVQIHDITGK Unmodified 1225.6303 0.63026569 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5 0 1 46.06 46.06 3 1.4937E-06 12393 TMT1-4 126.76 68.542 442.2 474.15 658.56 364.16 576.35 609.3 418 484 652 379 587 587 2 2 2 2 2 2 58573 3400 439 3373 5492 7176;7177 7176 2 DTVVVQDLGNIFTR Unmodified 1575.8257 0.82567103 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 6 0 1 73.471 73.471 2 0.0051166 23464 TMT1-5 71.806 34.462 23.256 36.266 28.118 21.715 34.826 53.372 22 36 29 22 36 51 1 1 1 1 1 1 11322 3401 634 3374 5493 7178 7178 1 DTWFQLQHVDADSEVQGK Unmodified 2101.9705 0.97049737 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 2 59.473 59.473 3;4 0.029809 17782 TMT1-4 38.453 25.279 160.76 227.35 199.88 119.38 167.2 271.32 152 227 203 123 174 259 2 2 2 2 2 2 35606 3402 1786 3375 5494;5495 7179;7180 7180 2 DTYIENEK Unmodified 1010.4557 0.45565537 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 2.67 0.471 1 2 40.892 40.892 2;3 0.0048476 11583 TMT1-2 122.13 80.026 238.42 265.46 280.2 199.25 315 307.61 225 269 283 203 320 297 3 3 3 3 3 3 58600 3403 478 3376 5496;5497;5498 7181;7182;7183 7182 3 DTYVSSFPR Unmodified 1070.5033 0.50327426 854 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 0 4 0 1 45.874 45.874 2 0.040704 12633 TMT1-3 69.716 38.343 122.92 159.86 125.26 140.67 143.34 267.74 116 160 131 138 152 255 1 1 1 1 1 1 8884.2 3404 854 3377 5499 7184 7184 1 DVAAHFLAR Unmodified 998.52976 0.52976379 166 O43306-2;O43306;O95622-2;O95622 ADCY6;ADCY5 Adenylate cyclase type 6;Adenylate cyclase type 5 yes no 0 0 0 0 0 7 0 1 43.221 43.221 3 0.00032094 10862 TMT1-6 116.05 73.713 46.582 57.616 57.108 43.905 41.668 68.101 44 58 58 44 44 65 1 1 1 1 1 1 5854 3405 166 3378 5500 7185 7185 1 DVACGANHTLVLDSQK Unmodified 1726.8308 0.83083277 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 5 0 1 44.585 44.585 3 6.0247E-09 11890 TMT1-4 112.67 55.531 53.841 111.45 53.865 43.384 79.642 59.555 51 109 58 44 80 58 1 1 1 1 1 1 9094.1 3406 2822 3379 5501 7186 7186 1 DVAEAKPELSLLGDGDH Unmodified 1764.853 0.853008 1921 Q2TAA2;Q2TAA2-2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes no 0 0 0 0 1 4 0 1 60.06 60.06 3 1.6807E-09 18277 TMT1-3 106.36 85.417 115.53 129.42 130.28 69.885 113.73 127.87 109 131 131 73 116 123 1 1 1 1 1 1 20310 3407 1921 3380 5502 7187 7187 1 DVAEQLEK Unmodified 930.46583 0.46582612 236 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 0 0 3 0 1 45.812 45.812 3 0.041796 13618 TMT1-2 50.04 10.892 68.781 78.891 95.194 32.192 78.837 97.954 65 80 94 36 80 94 1 1 1 1 1 1 4508.1 3408 236 3381 5503 7188 7188 1 DVAEVDTVR Unmodified 1002.4982 0.49818889 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 39.538 39.538 2 0.001177 10799 TMT1-1 123.21 80.373 115.61 105.9 136.17 139.35 178.85 118.55 109 109 138 138 181 116 1 1 1 1 1 1 21134 3409 1833 3382 5504 7189 7189 1 DVAGGLR Unmodified 686.37114 0.37113788 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.25 1.48 1 1 1 1 33.555 33.555 2 0.008156 7709 TMT1-3 119.22 35.934 5270.3 6869.4 5590.7 4092.7 5387.2 6426.7 4975 6878 5741 4142 5541 6173 5 5 5 5 5 5 753150 3410 3010 3383 5505;5506;5507;5508 7190;7191;7192;7193;7194 7192 5 DVAIKEPLVDVVDPK Unmodified 1635.9083 0.90833803 2497 Q99873-2;Q99873-3;Q99873 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 1 5 0 1 63.023 63.023 3 8.6713E-12 19104 TMT1-4 107.5 92.574 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3411 2497 3384 5509 7195 7195 1 DVALATK Unmodified 716.40685 0.40685468 2707 Q9NQ75;Q9NQ75-3 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 5 0 1 42.559 42.559 2 0.04673 11102 TMT1-4 83.206 30.523 224.49 444.73 304.98 253.29 327.38 484.22 213 437 318 254 340 463 1 1 1 1 1 1 26610 3412 2707 3385 5510 7196 7196 1 DVAPQAPVHFLVIPK Unmodified 1629.9243 0.92426287 2565 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 0 8 0 1 62.74 62.74 3 7.9711E-12 18619 TMT1-7 129.01 98.872 122.35 238.15 153.8 98.996 176.68 235.87 116 234 160 102 181 226 1 1 1 1 1 1 43277 3413 2565 3386 5511 7197 7197 1 DVAQGILSYGNK Unmodified 1263.6459 0.64591575 818 P20718;P20718-2;P20718-3 GZMH Granzyme H yes no 0 0 0 0 0 7 0 1 58.051 58.051 2 0.00049697 16728 TMT1-6 98.902 71.787 30.46 82.389 40.525 44.598 57.358 36.739 29 80 44 44 58 36 1 1 1 1 1 1 7246.4 3414 818 3387 5512 7198 7198 1 DVAQGILSYGNKK Unmodified 1391.7409 0.74087877 818 P20718;P20718-2;P20718-3 GZMH Granzyme H yes no 0 0 0 0 1 8 0 1 52.806 52.806 4 0.0061464 14709 TMT1-7 60.157 43.472 153.22 256.92 179.7 193.26 138.42 127.17 145 254 189 189 145 123 1 1 1 1 1 1 6840.5 3415 818 3388 5513 7199 7199 1 DVAQIFNNILR Unmodified 1301.7092 0.70918471 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 9 0 1 77.332 77.332 2 1.4756E-05 22589 TMT1-8 109.83 70.121 99.437 130.52 128.93 100.61 111.48 152.45 94 131 131 101 116 146 2 2 2 2 2 2 29282 3416 2985 3389 5514 7200;7201 7201 2 DVATVAFCDAQSTQEIHEK Unmodified 2147.9793 0.9793475 1696 Q13363-2;Q13363 CTBP1 C-terminal-binding protein 1 yes no 0 0 0 0 0 4 0 1 53.379 53.379 4 0.00012473 15593 TMT1-3 64.83 54.773 92.335 123.54 66.076 112.97 118.53 143.73 87 123 73 109 123 138 1 1 1 1 1 1 12072 3417 1696 3390 5515 7202 7202 1 DVAWAPSIGLPTSTIASCSQDGR Unmodified 2388.138 0.1379734 1322 P55735-2;P55735;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 0 6.5 0.5 1 1 71.145 71.145 3 5.0188E-07 22503 TMT1-5 77.53 61.764 61.514 88.718 45.833 83.413 68.86 106.77 58 88 51 80 73 102 2 2 2 2 2 2 24491 3418 1322 3391 5516;5517 7203;7204 7203 2 DVAYQYVK Unmodified 984.49165 0.49164694 1587 Q04837 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 47.871 47.871 2 0.0043104 13161 TMT1-4 125.96 87.64 155.98 684.43 436.35 413.78 385.34 561.45 151 660 459 409 405 537 1 1 1 1 1 1 44261 3419 1587 3392 5518 7205 7205 1 DVCTELLPLIKPQGR Unmodified 1737.9447 0.94474031 735 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 1 8 0 1 65.202 65.202 3 1.2187E-05 19559 TMT1-7 97.417 69.754 153.28 241.99 181.74 167.58 219.08 249.59 145 240 189 167 225 240 2 2 2 2 2 2 19286 3420 735 3393 5519 7206;7207 7206 2 DVCTFLR Unmodified 909.43784 0.43783723 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 51.41 51.41 2 0.010617 14686 TMT1-5 107.32 61.302 115.26 175.07 137.54 185.65 211.95 219.94 109 174 145 181 218 212 1 1 1 1 1 1 23229 3421 569 3394 5520 7208 7208 1 DVDDFFEHER Unmodified 1307.5418 0.54184461 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 2 0 1 51.647 51.647 3 0.0001391 15543 TMT1-1 108.9 89.141 84.329 161.53 117.05 157.23 102.61 121.79 80 159 124 152 109 117 2 2 2 2 2 2 20709 3422 2928 3395 5521 7209;7210 7209 2 DVDEIEAWISEK Unmodified 1432.6722 0.67219008 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4.33 0.471 2 1 78.564 78.564 2;3 3.3066E-06 25534 TMT1-3 114.76 71.003 169.29 209.35 223.45 172.14 251.09 225.22 160 211 226 174 255 218 6 6 6 6 6 6 26106 3423 1737 3396 5522;5523;5524 7211;7212;7213;7214;7215;7216 7212 6 DVDETISWIK Unmodified 1204.5976 0.59756858 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 66.511 66.511 3 0.00082435 20439 TMT1-4 93.556 60.498 61.241 95.514 85.905 49.145 78.571 83.038 58 95 87 51 80 80 1 1 1 1 1 1 10433 3424 1737 3397 5525 7217 7217 1 DVDFEGTDEPIFGK Unmodified 1567.7042 0.70421849 1094 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 0 0 4 0 1 67.122 67.122 3 9.3187E-05 21004 TMT1-3 68.171 47.218 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3425 1094 3398 5526 7218 7218 1 DVDFELIK Unmodified 977.50696 0.50696266 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 5 0 1 65.094 65.094 2 0.00492 19962 TMT1-4 121.62 35.608 145.67 231.41 208.76 134.75 193.42 218.34 138 230 212 138 198 210 1 1 1 1 1 1 35228 3426 1161 3399 5527 7219 7219 1 DVDHLFQK Unmodified 1000.4978 0.49779495 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 no no 0 0 0 0 0 6 0 1 49.779 49.779 3 0.0043246 14031 TMT1-5 87.323 55.102 53.586 118.29 90.762 80.324 90.733 113.6 51 116 94 80 94 109 1 1 1 1 1 1 12799 3427 993 3400 5528 7220 7220 1 DVDIIDHHDNTYTVK Unmodified 1783.8377 0.83769228 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.17 1.07 1 2 3 47.102 47.102 3;4 2.8131E-19 12872 TMT1-3 161.84 109.97 8943.4 12580 11707 8411.8 10784 13772 8459 12574 11905 8520 11131 13208 11 11 11 11 11 11 2487500 3428 831 3401 5529;5530;5531;5532;5533;5534 7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231 7230 11 DVDLEFLAK Unmodified 1048.5441 0.54407645 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 5 0 1 68.723 68.723 2 2.6773E-05 21289 TMT1-4 154.12 68.27 564.42 904.03 673.09 489.73 595.04 841.15 534 896 695 495 618 805 2 2 2 2 2 2 109780 3429 1311 3402 5535 7232;7233 7232 2 DVDNALR Unmodified 801.39808 0.39808091 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2 0.816 1 1 1 35.18 35.18 2 0.0004768 9141 TMT1-1 152.63 80.279 3728.2 4712.2 4390 3716.5 4322 5235.5 3521 4734 4489 3714 4467 5027 5 5 5 5 5 5 728970 3430 3010 3403 5536;5537;5538 7234;7235;7236;7237;7238 7237 5 DVDPDVIQTHLDK Unmodified 1493.7362 0.73618733 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 52.571 52.571 3 0.0052503 15260 TMT1-3 62.68 29.734 84.627 115.95 105.65 110.01 150.35 104.44 80 116 109 109 152 102 1 1 1 1 1 1 10814 3431 1138 3404 5539 7239 7239 1 DVDYVCISDNYWLGK Unmodified 1845.8244 0.82435041 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5 0 1 73.683 73.683 3 0.00092363 23288 TMT1-4 69.261 51.123 61.136 117.89 84.578 48.811 100.56 113.32 58 116 87 51 102 109 1 1 1 1 1 1 8711.6 3432 2434 3405 5540 7240 7240 1 DVEDEILWVGER Unmodified 1458.6991 0.69907354 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 2 0 1 69.793 69.793 2 3.9635E-14 22526 TMT1-1 178.46 149.54 54.079 60.301 57.192 61.843 75.542 62.87 51 61 59 61 77 61 2 2 2 2 2 2 13505 3433 1546 3406 5541 7241;7242 7241 2 DVEDFLSPLLGK Unmodified 1331.6973 0.69728262 1698 Q13405 MRPL49 39S ribosomal protein L49, mitochondrial yes yes 0 0 0 0 0 7 0 1 85.632 85.632 3 0.0039777 27513 TMT1-6 66.267 37.461 30.802 28.296 28.889 14.267 21.572 22.836 29 29 29 15 22 22 1 1 1 1 1 1 3942.3 3434 1698 3407 5542 7243 7243 1 DVEELQLK Unmodified 972.51278 0.51277632 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 4 0 1 53.894 53.894 2 0.020224 15834 TMT1-3 88.819 13.081 84.592 132.04 97.806 94.485 129.08 105.05 80 131 102 94 131 102 1 1 1 1 1 1 7252.6 3435 965 3408 5543 7244 7244 1 DVEFLAQLK Unmodified 1061.5757 0.57571092 1152;1153;1503 P78356;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 6 0 1 67.761 67.761 2 6.4855E-06 21118 TMT1-5 161.37 142.64 426.52 522.61 368.92 366.01 465.72 447.22 402 524 387 363 476 432 2 2 2 2 2 2 63330 3436 1503;1152;1153 3409 5544 7245;7246 7245 2 DVEKGELVAK Unmodified 1086.5921 0.59208927 2246 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 1 5 0 1 44.003 44.003 3 0.0042664 11673 TMT1-4 80.979 66.896 284 503.76 352.81 210.55 472.08 439.58 269 497 364 220 475 425 1 1 1 1 1 1 54187 3437 2246 3410 5545 7247 7247 1 DVFHTTVNFINQNLR Unmodified 1816.922 0.92203104 1329 P55957;P55957-2;P55957-4 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 9 0 1 68.901 68.901 3 0.00034238 19231 TMT1-8 64.675 47.534 68.815 102.73 69.169 74.215 77.161 90.54 65 102 73 73 80 87 1 1 1 1 1 1 11764 3438 1329 3411 5546 7248 7248 1 DVFIDSGGVR Unmodified 1063.5298 0.52982336 1979 Q5T6V5 C9orf64 UPF0553 protein C9orf64 yes yes 0 0 0 0 0 4 0 1 50.145 50.145 2 0.00069953 14317 TMT1-3 109.44 72.418 61.11 94.07 109.17 63.211 70.595 83.266 58 94 109 65 73 80 1 1 1 1 1 1 9815.1 3439 1979 3412 5547 7249 7249 1 DVFISAAER Unmodified 1006.5084 0.50835964 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 4 0 1 48.501 48.501 2 8.2814E-09 13644 TMT1-3 172.23 156.79 253.07 374.56 250.33 211.12 243.45 365.09 239 372 262 211 254 349 2 2 2 2 2 2 52433 3440 813 3413 5548 7250;7251 7250 2 DVFLGMFLYEYAR Oxidation (M) 1638.7752 0.77521537 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 1 0 0 7.5 0.5 1 1 81.845 81.845 3 0.00014526 25969 TMT1-6 98.337 74.661 54.977 87.803 63.284 57.99 86.797 75.341 52 87 66 58 88 73 3 3 3 3 3 3 18079 + 3441 28 3414 5549;5550 7252;7253;7254 7252 4 3 DVFLGMFLYEYAR Unmodified 1622.7803 0.78030075 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 8.67 0.471 1 2 89.21 89.21 2;3 8.9115E-11 28892 TMT1-7 143 121.53 136.03 151.25 141.59 124.42 142.18 170.77 128 153 145 124 147 164 4 5 5 5 5 5 28208 + 3442 28 3414 5551;5552;5553 7255;7256;7257;7258;7259 7255 5 DVFLMLK Unmodified 864.47791 0.47791114 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 8 0 1 71.401 71.401 2 0.0078611 21993 TMT1-7 122.78 72.736 146.58 127.09 144.05 100.52 126.68 166.95 138 131 145 102 131 160 1 1 1 1 1 1 13991 3443 39 3415 5554 7260 7260 1 DVFRDPALK Unmodified 1059.5713 0.57129425 1390 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 1 6 0 1 47.251 47.251 3 0.0035828 13048 TMT1-5 88.496 69.716 375.91 515.85 404.51 577.73 602.61 442.25 355 515 428 561 616 431 1 1 1 1 1 1 27620 3444 1390 3416 5555 7261 7261 1 DVFSISTLVCSTK Unmodified 1455.7279 0.72793082 2305 Q92608;Q92608-2 DOCK2 Dedicator of cytokinesis protein 2 yes no 0 0 0 0 0 8 0 1 73.356 73.356 3 6.6283E-07 22797 TMT1-7 116.01 90.794 30.504 43.655 66.021 34.479 49.688 60.41 29 44 65 36 51 58 1 1 1 1 1 1 5467.3 3445 2305 3417 5556 7262 7262 1 DVFSPIGER Unmodified 1018.5084 0.50835964 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 4 0 1 51.568 51.568 2 0.00090221 14895 TMT1-3 86.205 42.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3446 1324 3418 5557 7263 7263 1 DVFSSTGCKPNPSR Unmodified 1550.7147 0.71474038 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 1 7.5 0.5 1 1 40.259 40.259 3 5.4443E-22 9722 TMT1-6 169.46 151.28 394.77 564.19 618.91 361.17 454.21 514.71 374 565 620 372 467 495 2 2 2 2 2 2 56483 3447 876 3419 5558;5559 7264;7265 7264 2 DVGAQILLHSHK Unmodified 1316.7201 0.72008375 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 7 0 1 44.787 44.787 4 0.00039433 11435 TMT1-6 84.892 36.452 375.78 473.41 461.3 355.96 533.21 566.82 355 476 469 360 544 546 1 1 1 1 1 1 46382 3448 2434 3420 5560 7266 7266 1 DVGAYSK Unmodified 738.35482 0.35481911 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 37.76 37.76 2 0.021437 9131 TMT1-4 96.492 45.526 208.87 274.27 190.36 142.9 225.29 284.59 197 274 198 145 231 273 1 1 1 1 1 1 21305 3449 1833 3421 5561 7267 7267 1 DVGRPQPGR Unmodified 980.51518 0.51517635 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 1 4.67 2.49 1 1 1 1 1 1 22.179 22.179 3 0.00061338 3705 TMT1-4 113.62 64.828 342.7 366.99 341.59 372.85 363.29 344.61 323 372 353 366 375 333 10 10 10 10 10 10 57873 3450 1052 3422 5562;5563;5564;5565;5566;5567 7268;7269;7270;7271;7272;7273;7274;7275;7276;7277 7274 10 DVHNIYGLYVHMATADGLR Unmodified 2144.0473 0.047307904 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 7.5 0.5 1 1 63.371 63.371 4 0.00059233 18789 TMT1-6 54.223 40.796 184.14 239.13 228.4 164.96 152.21 220.58 174 240 232 166 160 211 3 3 3 3 3 3 38565 3451 1792 3423 5568;5569 7278;7279;7280 7278 3 DVIATDKEDVAFK Unmodified 1449.7351 0.73512469 1074 P40925-3;P40925 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 1 5 0 1 53.668 53.668 3 7.0665E-05 15422 TMT1-4 100.22 77.69 516.91 976.76 842.3 581.99 848.18 717.73 491 964 859 593 860 696 1 1 1 1 1 1 88221 3452 1074 3424 5570 7281 7281 1 DVIDEPIIEEPSR Unmodified 1510.7515 0.75150304 212 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 0 0 2 0 1 57.517 57.517 3 0.0003062 17912 TMT1-1 84.297 76.193 38.253 51.358 19.534 22.355 28.017 37.577 36 51 22 22 29 36 1 1 1 1 1 1 7514 3453 212 3425 5571 7282 7282 1 DVIEEYFK Unmodified 1041.5019 0.50187728 884 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 0 4.67 0.471 1 2 65.082 65.082 2;3 0.0055633 20245 TMT1-3 117.04 67.618 543.3 902.15 616.56 573.56 791.54 824.88 514 892 646 572 809 795 4 4 4 4 4 4 91141 3454 884 3426 5572;5573;5574 7283;7284;7285;7286 7283 4 DVIELTDDSFDK Unmodified 1395.6406 0.64055561 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 2 0 1 66.488 66.488 3 0.00090855 21269 TMT1-1 59.227 56.099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3455 1827 3427 5575 7287 7287 1 DVIEQLNLVTTWLQLQIPR Unmodified 2278.2685 0.26851729 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 9 0 1 105.73 105.73 3 7.5142E-29 33045 TMT1-8 146.58 120.43 7.3133 25.752 21.222 22.452 24.497 30.415 7 25 22 22 25 29 1 2 2 2 2 2 22125 3456 1603 3428 5576 7288;7289;7290 7289 3 DVIIADCGK Unmodified 989.48518 0.48518136 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 5 0 1 48.754 48.754 3 0.0023904 13430 TMT1-4 85.731 60.109 92.06 100.11 132.16 69.738 115.57 74.52 87 102 131 73 116 73 1 1 1 1 1 1 20376 3457 858 3429 5577 7291 7291 1 DVIINQEGEYIK Unmodified 1419.7246 0.72456001 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 4 0 1 56.441 56.441 3 1.1554E-05 16839 TMT1-3 109 92.465 37.699 112.42 60.785 58.587 62.981 67.493 36 109 65 58 65 65 1 1 1 1 1 1 6277.7 3458 2687 3430 5578 7292 7292 1 DVKLPVQLQR Unmodified 1194.7085 0.70845643 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 1 7.5 0.5 1 1 49.764 49.764 3 0.000293 13465 TMT1-7 88.596 78.909 115.46 136.78 135.33 116.68 108.61 214.36 109 138 138 116 116 204 1 1 1 1 1 1 11134 3459 906 3431 5579;5580 7293;7294 7294 2 DVKPENLLYTSK Unmodified 1405.7453 0.74529545 1898;1170 P49137;P49137-2;Q16644 MAPKAPK2;MAPKAPK3 MAP kinase-activated protein kinase 2;MAP kinase-activated protein kinase 3 no no 0 0 0 0 1 6 0 1 52.487 52.487 3 0.0010551 15143 TMT1-5 82.908 69.789 242.16 347.81 303.51 244.66 267.99 336.67 229 347 311 245 278 323 1 1 1 1 1 1 29798 3460 1170;1898 3432 5581 7295 7295 1 DVKPSNILVNSR Unmodified 1340.7412 0.74121312 1569;1037 Q02750;Q02750-2;P36507 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 0 0 0 0 1 7 0 1 44.478 44.478 3 0.00067493 11319 TMT1-6 87.727 67.603 222.62 323.49 181.76 219.58 301.83 237.63 210 321 196 216 306 231 1 1 1 1 1 1 26044 3461 1569;1037 3433 5582 7296 7296 1 DVKPSNVLINK Unmodified 1225.703 0.7030367 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 1 8 0 1 47.853 47.853 3 7.8367E-05 12749 TMT1-7 107.09 55.656 202.81 226.3 347.2 185.06 276.03 273.55 192 231 342 193 281 264 1 1 1 1 1 1 20050 3462 1130 3434 5583 7297 7297 1 DVLETFTVK Unmodified 1050.5597 0.55972651 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 0 6 0 1 64.132 64.132 2 6.3505E-09 19715 TMT1-5 174.02 110.54 115.04 198.2 154.79 131.47 132.07 181.72 109 196 160 131 138 174 1 1 1 1 1 1 25130 3463 835 3435 5584 7298 7298 1 DVLEVGELAK Unmodified 1071.5812 0.58119023 2604 Q9GZZ1 NAA50 N-alpha-acetyltransferase 50 yes yes 0 0 0 0 0 4 0 1 61.648 61.648 2 0.023882 18879 TMT1-3 73.887 33.819 46.291 111.85 60.042 75.06 61.161 98.459 44 109 65 73 65 94 1 1 1 1 1 1 5781.9 3464 2604 3436 5585 7299 7299 1 DVLGTGAFSEVILAEDKR Unmodified 1919 6.5851E-06 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 1 5.67 0.471 1 2 68.486 68.486 3;4 4.3506E-14 21382 TMT1-5 122.5 108.77 261.47 356.2 296.28 247.74 242.85 364.04 247 356 305 247 255 348 4 4 4 4 4 4 43711 3465 1746 3437 5586;5587;5588 7300;7301;7302;7303 7301 4 DVLIQGLIDENPGLQLIIR Unmodified 2118.2049 0.2048544 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 7 0 1 92.086 92.086 3 4.42E-11 29788 TMT1-6 104.03 92.587 7.3124 22.678 14.152 15.285 14.196 23.047 7 22 15 15 15 22 1 1 1 1 1 1 6752.7 3466 1507 3438 5589 7304 7304 1 DVLLPLK Unmodified 796.50584 0.50584045 2986 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 yes yes 0 0 0 0 0 7 0 1 62.974 62.974 2 0.0099031 18612 TMT1-6 110.35 60.308 207.1 274.57 307.07 194.63 185.32 374.21 196 276 308 198 198 356 1 1 1 1 1 1 21374 3467 2986 3439 5590 7305 7305 1 DVLLQVDDER Unmodified 1200.5986 0.59863121 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0 1 53.832 53.832 2 1.4185E-06 16389 TMT1-1 162.36 104.5 291.94 359.83 401.68 229.49 472.49 341.5 276 363 402 240 473 333 2 2 2 2 2 2 80525 3468 1019 3440 5591 7306;7307 7306 2 DVLLQVDDERR Unmodified 1356.6997 0.69974224 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2.5 1.12 1 1 1 1 45.606 45.606 3 6.1121E-17 13518 TMT1-2 179.98 113.49 1639.8 1949.2 1914.5 1599.4 2028.6 1929.1 1548 1966 1951 1600 2073 1864 8 8 8 7 8 8 667150 3469 1019 3441 5592;5593;5594;5595 7308;7309;7310;7311;7312;7313;7314;7315 7313 8 DVLLRPK Unmodified 839.52289 0.52288749 1047;2832 P36959;Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR;GMPR2 GMP reductase 1;GMP reductase 2 no no 0 0 0 0 1 8 0 1 41.385 41.385 3 0.034555 10159 TMT1-7 68.422 40.897 307.78 574.04 444.65 310.4 392.86 450.37 292 566 457 315 404 433 1 1 1 1 1 1 40643 3470 1047;2832 3442 5596 7316 7316 1 DVLLVAQGEMALEEFLK Unmodified 1903.9965 0.99650111 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 98.24 98.24 3 0.032971 32588 TMT1-5 38.889 26.507 0 7.1952 15.121 15.212 14.991 0 0 7 15 15 15 0 0 1 1 1 1 0 991.2 3471 1763 3443 5597 7317 7317 1 DVLQPLSR Unmodified 926.51853 0.5185304 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 5 0 1 48.089 48.089 2 0.013266 13226 TMT1-4 95.502 86.639 92.099 122.89 106.25 86.502 120.01 136.22 87 123 109 87 123 131 1 1 1 1 1 1 13185 3472 3003 3444 5598 7318 7318 1 DVLSVAFSSDNR Unmodified 1308.631 0.63099397 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 5.33 0.471 2 1 60.061 60.061 2;3 8.564E-06 18082 TMT1-5 115.91 72.107 223.26 304.95 269.88 209.49 268.46 308.94 211 305 276 211 276 297 3 3 3 3 3 3 54353 3473 1478 3445 5599;5600;5601 7319;7320;7321 7321 3 DVLVGADSVR Unmodified 1029.5455 0.54547343 200 O43760;O43760-2 SYNGR2 Synaptogyrin-2 yes no 0 0 0 0 0 4 0 1 46.171 46.171 2 0.031353 12762 TMT1-3 70.056 43.98 68.876 110.45 52.469 74.359 122.43 81.786 65 109 58 73 123 80 1 1 1 1 1 1 7462.1 3474 200 3446 5602 7322 7322 1 DVMDALILK Unmodified 1016.5576 0.55761802 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 6 0 1 72.401 72.401 2 0.0019445 22961 TMT1-5 109.71 42.589 46.095 111.31 93.353 32.43 72.01 83.225 44 109 94 36 73 80 1 1 1 1 1 1 6456 3475 2166 3447 5603 7323 7323 1 DVMPEVNK Unmodified 930.44807 0.44806757 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 4 0 1 47.125 47.125 2 0.021895 13208 TMT1-3 87.616 42.304 192.23 224.04 143.18 154.27 235.16 225.68 181 225 152 153 239 218 2 2 2 2 2 2 11599 3476 516 3448 5604 7324;7325 7325 2 DVMQQQLAEYQELLDVK Unmodified 2049.0089 0.0088567119 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 5 0 2 80.522 80.522 3;4 1.4907E-05 25956 TMT1-4 79.393 52.556 84.811 93.799 93.472 48.945 65.219 45.681 80 95 94 51 66 44 2 2 2 2 2 1 19058 3477 1577 3449 5605;5606 7326;7327 7326 2 DVNAAIAAIK Unmodified 984.5604 0.56039521 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 4.67 2.62 1 1 1 59.083 59.083 2 3.6135E-07 17083 TMT1-6 166.07 79.395 4928.6 6570.3 5383.8 3688.9 4442.1 7349.1 4654 6572 5515 3745 4650 7013 6 6 6 6 6 6 962270 3478 1492 3450 5607;5608;5609 7328;7329;7330;7331;7332;7333 7332 6 DVNAAIATIK Unmodified 1014.571 0.5709599 1491;2068;2510;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3 TUBA3E;TUBA1B;TUBA1A;TUBA1C Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 0 4.67 2.62 1 1 1 55.949 55.949 2 2.5421E-14 15868 TMT1-6 187.33 100.38 5259.4 7643.7 6032.3 5307.5 6171.9 8511.8 4971 7612 6242 5291 6413 8150 6 6 6 6 6 6 1241200 3479 622;1491;2068;2510 3451 5610;5611;5612 7334;7335;7336;7337;7338;7339 7339 6 DVNFEFPEFQL Unmodified 1383.6347 0.63468237 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 5 0 1 92.92 92.92 2 0.00019564 30760 TMT1-4 108.57 83.011 46.504 73.591 56.564 34.614 72.459 67.222 44 73 58 36 73 65 1 1 1 1 1 1 44375 3480 1412 3452 5613 7340 7340 1 DVNQQEFVR Unmodified 1133.5465 0.54653606 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 0 2.33 0.471 2 1 40.259 40.259 2 0.0018911 11007 TMT1-1 110.88 75.682 207.49 275.67 239.19 235.28 214.65 288.09 196 276 247 232 225 276 3 3 3 3 3 3 65356 3481 1060 3453 5614;5615;5616 7341;7342;7343 7341 3 DVNTDFLLILLK Unmodified 1402.8072 0.80716742 2076 Q7L2E3-3;Q7L2E3;Q7L2E3-2 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 0 0 8 0 1 94.115 94.115 3 0.0024083 30581 TMT1-7 72.089 46.872 7.3984 15.362 5.9052 15.934 5.7903 23.287 7 15 7 15 7 22 1 1 1 1 1 1 766.31 3482 2076 3454 5617 7344 7344 1 DVNVAIAAIK Unmodified 1012.5917 0.59169534 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 0 6.5 0.5 1 1 60.023 60.023 2 2.8734E-07 17558 TMT1-6 166.33 120.61 513.33 600.74 500.43 432.08 546.22 603.76 484 605 516 432 561 581 3 3 3 3 3 3 129900 3483 2783 3455 5618;5619 7345;7346;7347 7347 3 DVPAYSQDTFK Unmodified 1269.5877 0.58773217 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 50.928 50.928 3 1.7483E-05 14319 TMT1-4 113.77 99.081 253.25 336.22 251.64 282.01 247.65 391.62 239 336 264 276 262 374 2 2 2 2 2 2 64662 3484 478 3456 5620;5621 7348;7349 7349 2 DVPIGAIICITVGKPEDIEAFK Unmodified 2384.2661 0.26613403 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 1 7 0 1 82.603 82.603 4 1.0802E-17 26315 TMT1-6 112.58 95.433 53.753 111.2 68.709 74.845 45.156 138.36 51 109 73 73 51 131 1 1 1 1 1 1 6761.3 3485 631 3457 5622 7350 7350 1 DVPIVHTETK Unmodified 1137.603 0.60298831 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171 EPB41 Protein 4.1 yes no 0 0 0 0 0 4.5 0.5 1 1 40.047 40.047 3 0.00085453 10316 TMT1-3 93.058 33.516 230.96 274.73 264.44 201.26 258.08 378.53 218 277 269 203 268 362 2 2 2 2 2 2 20726 3486 643 3458 5623;5624 7351;7352 7351 2 DVPLGTPLCIIVEK Unmodified 1552.8535 0.85346569 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 6 0 1 75.984 75.984 3 0.00066886 24387 TMT1-5 74.769 54.93 77.736 40.483 65.272 50.213 87.17 44.417 73 44 65 51 87 44 1 1 1 1 1 1 7227.9 3487 631 3459 5625 7353 7353 1 DVPVAEEVSALFAGELNPVAPK Unmodified 2251.1736 0.17361385 97 O14617-4;O14617;O14617-5;O14617-3;O14617-2 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 6 0 2 91.174 91.174 3;4 4.9718E-09 30121 TMT1-5 80.975 71.053 23.22 67.828 49.65 59.104 70.784 83.26 22 66 51 58 73 80 2 3 2 3 3 3 9241.8 3488 97 3460 5626;5627 7354;7355;7356 7356 3 DVQDSLTVSNEAQTAK Unmodified 1704.8166 0.81662249 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 2.67 0.471 1 2 48.918 48.918 3;4 6.4255E-29 14780 TMT1-2 185.86 158.4 495.5 572.93 453.83 424.74 619.01 626.2 467 577 471 424 631 604 4 4 4 4 4 4 86518 3489 1277 3461 5628;5629;5630 7357;7358;7359;7360 7359 4 DVQGTDASLDEELDR Unmodified 1661.738 0.73803782 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 2 0 1 50.769 50.769 2 0.0052255 15227 TMT1-1 68.168 60.063 46.659 50.276 50.34 35.694 34.732 37.385 44 51 51 36 36 36 1 1 1 1 1 1 5587 3490 2890 3462 5631 7361 7361 1 DVQHLLVK Unmodified 950.55492 0.5549159 933 P29122-2;P29122-8;P29122;P29122-7;P29122-6;P29122-5;P29122-4;P29122-3 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 7 0 1 48.086 48.086 3 0.0038867 12756 TMT1-6 88.948 71.922 184.5 220.72 182.51 175.42 206.54 208.37 174 222 189 174 212 201 1 1 1 1 1 1 13806 3491 933 3463 5632 7362 7362 1 DVQIGDIVTVGECRPLSK Unmodified 1985.0252 0.025175478 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 1 6 0 1 61.502 61.502 3 4.4874E-27 18680 TMT1-5 164.02 128.85 161.15 218.71 142.25 185.89 183.96 212.21 152 218 152 181 191 204 1 1 1 1 1 1 25040 3492 1428 3464 5633 7363 7363 1 DVQMLQDAISK Unmodified 1246.6227 0.62273747 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 6 0 1 62.607 62.607 2 1.6797E-05 19094 TMT1-5 121.68 82.414 99.924 115.69 59.571 74.394 98.062 151.77 94 116 65 73 102 145 1 1 1 1 1 1 20059 3493 1891 3465 5634 7364 7364 1 DVQTALALAK Unmodified 1028.5866 0.58660996 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 7 0 1 59.013 59.013 2 6.2337E-13 17086 TMT1-6 147.95 93.539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3494 2485 3466 5635 7365 7365 1 DVSAQATGK Unmodified 875.43486 0.43486035 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 33.796 33.796 2 0.010817 7625 TMT1-4 87.806 39.245 30.587 35.251 59.262 27.495 35.622 22.435 29 36 58 29 36 22 1 1 1 1 1 1 3871.4 3495 1184 3467 5636 7366 7366 1 DVSELTGFPEMLGGR Unmodified 1606.7661 0.76610724 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 5 0 1 73.297 73.297 3 9.7851E-08 23121 TMT1-4 108.58 103.52 46.474 81.061 55.369 51.396 55.689 76.229 44 80 58 51 58 73 1 1 1 1 1 1 10849 3496 981 3468 5637 7367 7367 1 DVSSVELLMK Unmodified 1119.5846 0.58456105 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 65.787 65.787 2 0.019209 20417 TMT1-5 76.282 36.573 30.326 89.568 57.112 26.914 73.326 52.274 29 87 59 29 73 51 1 1 1 1 1 1 6486.2 3497 651 3469 5638 7368 7368 1 DVSVPVAEIK Unmodified 1055.5863 0.58627561 2050 Q6VY07;Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 yes no 0 0 0 0 0 5 0 1 55.908 55.908 2 0.00061068 16304 TMT1-4 112.11 73.54 77.111 116.45 105.98 102.93 118.99 143.71 73 116 109 102 123 138 1 1 1 1 1 1 12407 3498 2050 3470 5639 7369 7369 1 DVTADFEGQSPK Unmodified 1292.5885 0.58846046 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 4 0 1 49.343 49.343 3 6.7387E-05 14005 TMT1-3 100.93 79.374 168.89 299.97 214.62 126.94 183.77 235.67 160 296 221 131 189 226 1 1 1 1 1 1 20789 3499 2866 3471 5640 7370 7370 1 DVTATVDSLPLITASILSK Unmodified 1943.0827 0.082673582 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 8 0 2 91.443 91.443 3;4 1.3889E-30 29613 TMT1-7 145.62 128.94 130.44 159.37 139.73 180.07 153.12 173.65 123 160 146 175 160 167 2 2 3 3 3 3 48718 3500 800 3472 5641;5642 7371;7372;7373 7372 3 DVTCDVHYENYR Unmodified 1569.6518 0.65180577 2486 Q99719 SEPT5 Septin-5 yes yes 0 0 0 0 0 3 0 1 39.261 39.261 3 7.9827E-09 11006 TMT1-2 132.69 124.12 77.101 116.42 107.73 63.726 47.793 76.454 73 116 109 65 51 73 1 1 1 1 1 1 17760 3501 2486 3473 5643 7374 7374 1 DVTEAIQWIK Unmodified 1201.6343 0.63428844 430 P02549-2;P02549 SPTA1 Spectrin alpha chain, erythrocytic 1 yes no 0 0 0 0 0 7 0 1 70.798 70.798 3 0.0054287 21729 TMT1-6 50.108 29.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3502 430 3474 5644 7375 7375 1 DVTEALILQLFSQIGPCK Unmodified 2031.0711 0.071063038 975 P31483-3;P31483-2;P31483 TIA1 Nucleolysin TIA-1 isoform p40 yes no 0 0 0 0 0 9 0 1 100.24 100.24 4 3.9853E-05 31201 TMT1-8 65.943 48.143 30.55 51.338 51.817 27.225 73.569 44.805 29 51 52 29 73 44 2 2 2 2 2 2 3084.7 3503 975 3475 5645 7376;7377 7377 2 DVTFSPATIENELIK Unmodified 1675.8669 0.86686715 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 0 5 0 1 76.145 76.145 3 3.6292E-17 24271 TMT1-4 143.38 102.83 332.19 351.07 318.06 292.08 315.37 355.57 313 356 327 290 326 342 4 4 4 4 4 4 29561 3504 1313 3476 5646 7378;7379;7380;7381 7379 4 DVTGAEALLER Unmodified 1172.6037 0.60371659 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 2.5 0.5 1 1 56.604 56.604 2 1.5845E-06 17792 TMT1-2 138.25 98.622 154.26 119.5 121.69 101.7 134.5 150.73 145 124 124 102 138 145 2 2 2 2 2 2 27209 3505 1737 3477 5647;5648 7382;7383 7383 2 DVTGPDEESFLYFAYGSNLLTER Unmodified 2622.2126 0.21257814 258 O75223;O75223-3;O75223-2;O75223-4 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 0 0 5 0 1 86.223 86.223 3 1.0238E-06 28244 TMT1-4 75.773 68.191 7.3833 13.748 38.898 6.1517 21.946 22.826 7 14 37 7 22 22 1 2 2 1 2 2 5845.5 3506 258 3478 5649 7384;7385 7385 2 DVTLENR Unmodified 845.4243 0.42429566 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2.5 0.5 1 1 35.032 35.032 2 0.0022166 9041 TMT1-1 143.11 63.168 185.69 215.57 167.5 154.91 124.47 158.48 175 217 174 153 131 152 2 2 2 2 2 2 19500 3507 1186 3479 5650;5651 7386;7387 7386 2 DVTNNVHYENYR Unmodified 1522.6801 0.68006943 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 3 0 1 35.864 35.864 3 7.8217E-11 9731 TMT1-2 158.59 128.15 230.85 296.02 264.59 169.31 271.08 286.48 218 297 269 174 276 276 2 2 2 2 2 2 107650 3508 1883 3480 5652 7388;7389 7389 2 DVTYEEAK Unmodified 953.43419 0.43419164 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 2.33 0.471 2 1 40.159 40.159 2;3 0.00047816 11300 TMT1-2 151.04 88.318 638 797.14 660.63 662.22 528.92 830.25 602 800 685 651 562 793 3 3 3 3 3 3 115830 3509 1378 3481 5653;5654;5655 7390;7391;7392 7392 3 DVVGNDVATILSR Unmodified 1357.7201 0.72014333 3064 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 0 0 0 0 0 5 0 1 63.456 63.456 2 2.3318E-05 19234 TMT1-4 110.15 66.192 15.651 36.517 43.743 35.798 50.14 45.473 15 36 44 36 51 44 1 1 1 1 1 1 20065 3510 3064 3482 5656 7393 7393 1 DVVHLDSEK Unmodified 1040.5138 0.51383895 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 3 0 1 40.788 40.788 3 8.8467E-05 11621 TMT1-2 93.111 57.167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3511 1780 3483 5657 7394 7394 1 DVVHSIQK Unmodified 924.50288 0.50288033 1962 Q5JSP0;Q5JSP0-3;Q5JSP0-2 FGD3 FYVE, RhoGEF and PH domain-containing protein 3 yes no 0 0 0 0 0 6 0 1 37.391 37.391 3 0.0026068 9148 TMT1-5 63.673 31.063 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3512 1962 3484 5658 7395 7395 1 DVVICPDASLEDAK Unmodified 1530.7236 0.72357373 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 3.33 0.471 2 1 59.617 59.617 2;3 2.5698E-12 17961 TMT1-3 110.98 84.861 53.656 110.93 85.367 65.622 75.944 137.48 51 109 88 66 80 131 2 2 2 2 2 2 21860 3513 2468 3485 5659;5660;5661 7396;7397;7398 7398 3 DVVICPDASLEDAKK Unmodified 1658.8185 0.81853675 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 4.67 0.471 1 2 54.418 54.418 2;3 3.6082E-05 15712 TMT1-4 77.593 62.582 435.82 509.1 439.36 405.05 433.42 452.41 411 513 453 402 447 436 2 2 2 2 2 2 233760 3514 2468 3486 5662;5663;5664 7399;7400;7401 7401 3 DVVIMLLGNK Unmodified 1100.6264 0.62636629 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 9 0 1 76.17 76.17 3 0.001978 22065 TMT1-8 75.294 40.194 30.518 51.249 57.242 51.293 55.181 91.167 29 51 58 51 58 87 1 1 1 1 1 1 7058.6 3515 2366 3487 5665 7402 7402 1 DVVIQDDDVECTMVEK Unmodified 1893.8336 0.83359446 501;757 P05771-2;P05771;P17252 PRKCB;PRKCA Protein kinase C beta type;Protein kinase C alpha type no no 0 0 0 0 0 2.5 0.5 1 1 61.063 61.063 3 2.7718E-05 19299 TMT1-1 82.707 58.907 46.313 104.36 62.666 50.542 77.957 99.045 44 102 66 51 80 95 2 2 2 2 2 2 14732 3516 501;757 3488 5666;5667 7403;7404 7403 2 DVVLIDDDVECTMVEK Unmodified 1878.8591 0.85908093 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 2 0 1 70.304 70.304 3 0.013107 22743 TMT1-1 49.343 39.004 15.934 14.641 14.604 14.986 28.612 30.098 15 15 15 15 29 29 1 1 1 1 1 1 2601.5 3517 1596 3489 5668 7405 7405 1 DVVLIGEQAR Unmodified 1098.6033 0.60332266 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 4 0 1 49.944 49.944 2 0.00014914 14273 TMT1-3 134.23 65.381 107.92 152.31 127.9 93.276 98 128.32 102 152 131 94 102 123 1 1 1 1 1 1 19895 3518 1564 3490 5669 7406 7406 1 DVVMVHEPK Unmodified 1052.5325 0.5324659 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 4 0 1 40.304 40.304 3 0.0075534 10441 TMT1-3 47.261 23.656 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3519 39 3491 5670 7407 7407 1 DVVPADVASPESGSCNRFEVTLEK Unmodified 2605.233 0.232996 2426 Q96JC1 VPS39 Vam6/Vps39-like protein yes yes 0 0 0 0 1 7 0 1 97.168 97.168 4 0.027261 31617 TMT1-6 35.436 11.874 86.848 126.81 83.788 51.637 69.001 145.14 82 126 87 53 73 138 1 1 1 1 1 1 37466 3520 2426 3492 5671 7408 7408 1 DVVQAYPEVR Unmodified 1174.5982 0.59823728 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 3 0 1 45.409 45.409 3 0.0019085 13465 TMT1-2 84.507 52.573 30.607 51.498 42.02 52.615 33.148 60.882 29 51 44 51 36 58 1 1 1 1 1 1 9042.2 3521 1619 3493 5672 7409 7409 1 DVWGIEGPIDAAFTR Unmodified 1645.81 0.81002097 456 P04004;CON__Q3ZBS7 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes no 0 0 0 0 0 5.33 0.471 2 1 76.903 76.903 2;3 4.7952E-07 24545 TMT1-4 109 83.059 91.514 200.05 139.19 117.49 111.49 159.92 87 196 145 117 117 153 4 4 4 4 4 4 45175 3522 456 3494 5673;5674;5675 7410;7411;7412;7413 7410 4 DVYDKVDYLSSLGK Unmodified 1600.7985 0.79845323 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 1 7 0 2 66.816 66.816 3;4 0.00018732 20152 TMT1-6 85.469 65.864 245.91 279.99 271.6 201.84 204.62 381.12 232 283 276 203 217 363 2 2 2 2 2 2 26281 3523 1767 3495 5676;5677 7414;7415 7414 2 DVYIVQDLMETDLYK Unmodified 1843.8914 0.89136734 930;910 P28482;P28482-2;P27361;P27361-2;P27361-3 MAPK1;MAPK3 Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3 no no 0 0 0 0 0 5 0 1 83.399 83.399 2 2.8185E-14 27093 TMT1-4 134.08 127.04 7.2621 14.983 29.131 29.43 28.204 22.647 7 15 29 29 29 22 1 1 1 1 1 1 2991.2 3524 930;910 3496 5678 7416 7416 1 DVYTGDALR Unmodified 1008.4876 0.4876242 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 3 0 1 42.707 42.707 2 0.00053794 12381 TMT1-2 135 76.805 559.35 816.72 697.18 528.47 608.87 813.04 529 814 714 532 632 779 1 1 1 1 1 1 70114 3525 813 3497 5679 7417 7417 1 DWAGGFLDLK Unmodified 1120.5553 0.55530983 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 7 0 1 74.259 74.259 2 0.0001449 23064 TMT1-6 134.68 53.082 115.34 191.5 108.9 101.87 166.17 111.45 109 189 116 102 167 109 1 1 1 1 1 1 21280 3526 817 3498 5680 7418 7418 1 DWHRPCLK Unmodified 1110.5393 0.53928261 1215 P50238 CRIP1 Cysteine-rich protein 1 yes yes 0 0 0 0 1 8 0 1 36.411 36.411 4 0.001395 8233 TMT1-7 110.41 72.105 536.81 691.79 623.55 457.6 600.69 811.14 507 694 636 463 621 777 2 2 2 2 2 2 29654 3527 1215 3499 5681 7419;7420 7420 2 DWIDILTK Unmodified 1002.5386 0.53859714 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 7 0 1 77.186 77.186 2 0.0048727 24241 TMT1-6 121.96 62.156 291.22 338.21 361.22 219.73 247.88 376.69 275 342 363 225 259 360 2 2 2 2 2 2 39911 3528 1786 3500 5682 7421;7422 7422 2 DWILPSDYDHAEAEAR Unmodified 1886.8435 0.84350594 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-15 CALU Calumenin yes no 0 0 0 0 0 3 0 1 57.245 57.245 3 0.0024882 18151 TMT1-2 60.307 48.389 30.65 51.616 34.759 21.146 44.034 29.657 29 51 36 22 44 29 1 1 1 1 1 1 12922 3529 209 3501 5683 7423 7423 1 DWLFAPHYR Unmodified 1203.5825 0.58252764 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 8 0 1 55.41 55.41 3 0.0047509 15746 TMT1-7 76.221 35.498 54.095 57.11 57.113 43.634 56.046 76.219 51 58 58 44 58 73 1 1 1 1 1 1 5190 3530 1810 3502 5684 7424 7424 1 DWNTLIVGK Unmodified 1044.5604 0.56039521 103 O14744-2;O14744;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 0 8 0 1 64.951 64.951 2 0.001419 19481 TMT1-7 119.75 67.344 99.426 121.86 138.06 77.34 99.503 105.89 94 123 138 80 102 102 1 1 1 1 1 1 10732 3531 103 3503 5685 7425 7425 1 DWNVDLIPK Unmodified 1098.571 0.5709599 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 6 0 1 67.431 67.431 2 0.0018832 20985 TMT1-5 111.06 55.508 99.16 161.05 149.5 107.84 127.14 143.48 94 160 152 109 131 138 1 1 1 1 1 1 38051 3532 1217;972 3504 5686 7426 7426 1 DWSFYLLYYTEFTPTEKDEYACR Unmodified 2996.3215 0.32147666 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 1 7 0 2 85.218 85.218 3;4 6.5396E-09 27355 TMT1-6 82.367 80.362 108.25 99.268 117.27 63.26 100.41 98.405 102 102 117 66 102 95 2 2 2 2 2 2 15174 3533 1399 3505 5687;5688 7427;7428 7427 2 DWSPTLYIR Unmodified 1149.5819 0.58185893 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 62.336 62.336 2 0.0020718 18356 TMT1-6 106.93 72.118 92.051 122.75 114.52 70.973 105.81 144.09 87 123 116 73 109 138 1 1 1 1 1 1 26940 3534 1112 3506 5689 7429 7429 1 DWVDQISFLLK Unmodified 1362.7184 0.71835242 2123 Q86WV1-2;Q86WV1 SKAP1 Src kinase-associated phosphoprotein 1 yes no 0 0 0 0 0 8 0 1 90.618 90.618 3 4.3895E-05 29234 TMT1-7 107.06 78.152 23.335 28.932 20.965 22.127 35.613 29.898 22 29 22 22 36 29 1 1 1 1 1 1 4609.1 3535 2123 3507 5690 7430 7430 1 DWVLNEFK Unmodified 1049.5182 0.51819605 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 6 0 1 67.72 67.72 2 0.0048476 21117 TMT1-5 122.13 84.576 130.41 181.97 109.06 109.53 164.98 196.77 123 181 116 109 169 189 1 1 1 1 1 1 13433 3536 764 3508 5691 7431 7431 1 DWVLTAAHCNLNK Unmodified 1540.7456 0.74564657 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 8 0 1 54.317 54.317 3 0.0001261 15344 TMT1-7 90.926 75.533 61.082 110.18 100.25 71.78 108.15 74.732 58 109 102 73 109 73 1 1 1 1 1 1 11460 3537 671 3509 5692 7432 7432 1 DWVLTAAHCNLNKR Unmodified 1696.8468 0.8467576 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 1 9 0 1 47.894 47.894 4 0.039916 10924 TMT1-8 34.92 12.722 68.681 93.723 99.42 111.67 81.705 121.32 65 94 102 109 87 116 1 1 1 1 1 1 4617.2 3538 671 3510 5693 7433 7433 1 DWYPHSR Unmodified 959.42496 0.42496436 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 5 0 1 34.886 34.886 3 0.022646 7993 TMT1-4 65.252 36.294 137.73 174.43 148.64 129.06 221.95 217.53 130 175 153 130 225 210 2 2 2 2 2 2 11964 3539 476 3511 5694 7434;7435 7434 2 DYAAYNVLDDPELR Unmodified 1652.7682 0.76821573 2102 Q86SX6 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 0 0 0 0 0 3 0 1 64.411 64.411 3 2.2142E-05 20982 TMT1-2 92.457 72.779 39.066 58.116 57.527 34.685 65.64 52.493 37 58 58 36 66 51 2 2 2 2 2 2 13988 3540 2102 3512 5695 7436;7437 7437 2 DYAFIHFDER Unmodified 1311.5884 0.58840088 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 4 0 1 55.068 55.068 3 0.039274 16261 TMT1-3 47.361 30.729 138.65 190.12 160.71 176.74 205.37 179.62 131 190 167 174 210 174 1 1 1 1 1 1 11822 3541 226;227 3513 5696 7438 7438 1 DYAFVHFEDR Unmodified 1297.5728 0.57275081 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 4 0 1 51.265 51.265 3 0.0055126 14752 TMT1-3 71.555 43.813 92.03 146.44 97.94 71.248 143.74 135.54 87 145 102 73 145 131 1 1 1 1 1 1 18809 3542 170 3514 5697 7439 7439 1 DYAFVHMEK Unmodified 1138.5117 0.51173046 2443 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 0 5 0 1 48.944 48.944 3 0.023272 13635 TMT1-4 54.608 33.232 115.4 183.01 107.28 149.62 131.49 174.27 109 181 116 145 138 167 1 1 1 1 1 1 15271 3543 2443 3515 5698 7440 7440 1 DYAPPPR Unmodified 814.39735 0.39735263 1056 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 0 3 0 1 31.011 31.011 2 0.02412 7789 TMT1-2 94.401 46.286 153.48 237.13 153.03 114.14 187.58 141.76 145 235 160 116 189 138 1 1 1 1 1 1 19140 3544 1056 3516 5699 7441 7441 1 DYDHLFK Unmodified 936.43413 0.43413207 1841 Q15286;Q15286-2 RAB35 Ras-related protein Rab-35 yes no 0 0 0 0 0 5 0 1 49.059 49.059 3 0.017029 13661 TMT1-4 71.296 37.938 343.24 539.38 465.15 305.81 514.26 546.04 325 536 474 314 523 526 1 1 1 1 1 1 34129 3545 1841 3517 5700 7442 7442 1 DYDLLVVGGGSGGLACAK Unmodified 1750.856 0.85598488 2698 Q9NNW7-2;Q9NNW7 TXNRD2 Thioredoxin reductase 2, mitochondrial yes no 0 0 0 0 0 6 0 1 67.163 67.163 3 0.0023015 20982 TMT1-5 53.453 38.032 46.708 50.412 42.004 52.606 33.662 45.943 44 51 44 51 36 44 1 1 1 1 1 1 6280.2 3546 2698 3518 5701 7443 7443 1 DYDPVAAR Unmodified 905.4243 0.42429566 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 2 0 1 37.891 37.891 2 0.011355 10152 TMT1-1 98.009 55.174 84.629 84.659 131.74 100.95 142.93 119.58 80 87 131 102 145 116 1 1 1 1 1 1 16961 3547 1868 3519 5702 7444 7444 1 DYEDQQK Unmodified 924.38249 0.38249043 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 2 0 1 32.714 32.714 2 0.0056478 8064 TMT1-1 133.79 58.412 176.91 169.2 239.54 155.59 266.31 108.59 167 174 238 160 265 109 1 1 1 1 1 1 20151 3548 437 3520 5703 7445 7445 1 DYEEIGPSICR Unmodified 1337.5922 0.59216562 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 2.33 0.471 2 1 49.355 49.355 2;3 0.00016253 14738 TMT1-1 101.39 87.364 184.58 215.53 174.17 175.39 234.44 218.24 174 217 181 174 239 211 3 3 3 3 3 3 94928 3549 1379 3521 5704;5705;5706 7446;7447;7448 7447 3 DYEEVGIDSYEDEDEGEE Unmodified 2120.7706 0.77057932 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 2 0 1 63.29 63.29 3 8.1882E-05 20095 TMT1-1 74.966 70.099 54.127 50.723 57.162 51.125 64.371 67.453 51 52 58 51 66 65 2 2 2 2 2 2 20917 3550 1492 3522 5707 7449;7450 7449 2 DYEEVGVDSVEGEGEEEGEEY Unmodified 2347.8976 0.89757075 1491;2068 P68363;P68363-2;Q71U36-2;Q71U36 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 0 0 0 0 0 2 0 1 64.258 64.258 3 2.2113E-07 20483 TMT1-1 84.375 81.493 23.291 28.808 28.554 21.955 20.706 37.785 22 29 29 22 22 36 2 2 2 2 2 2 15276 3551 1491;2068 3523 5708 7451;7452 7451 2 DYETATLSDIK Unmodified 1254.598 0.59796251 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4 0 2 55.248 55.248 2;3 2.2916E-23 16307 TMT1-3 198.25 142.88 254.29 286.39 300.2 254.69 268.22 255.65 240 290 305 254 276 247 2 2 2 2 2 2 73012 3552 195 3524 5709;5710 7453;7454 7453 2 DYETATLSEIK Unmodified 1268.6136 0.61361257 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.5 0.5 1 1 56.181 56.181 3 9.4965E-08 16603 TMT1-3 149.23 66.952 444.89 463.64 576.29 476.18 518.11 632.28 420 473 580 476 537 607 3 3 3 3 3 3 207520 3553 672 3525 5711;5712 7455;7456;7457 7456 3 DYETDFNLEHINR Unmodified 1664.7431 0.74306362 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 3 0 1 51.431 51.431 3 0.00033908 15865 TMT1-2 83.087 68.929 68.789 78.914 93.776 63.991 77.888 83.057 65 80 94 65 80 80 1 1 1 1 1 1 12670 3554 2121 3526 5713 7458 7458 1 DYETVVK Unmodified 852.4229 0.42289868 1281 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 0 4 0 1 43.938 43.938 2 0.0031566 11881 TMT1-3 87.754 47.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3555 1281 3527 5714 7459 7459 1 DYFEEYGK Unmodified 1049.4342 0.43419164 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 3.5 0.5 1 1 54.271 54.271 2 0.0010405 15995 TMT1-3 145.63 122.2 815.45 1231.6 944.62 968.63 1411.1 1200.6 771 1224 985 962 1431 1164 3 3 3 3 3 3 200390 3556 848 3528 5715;5716 7460;7461;7462 7462 3 DYFEEYGKIDTIEIITDR Unmodified 2219.0634 0.063394703 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 4.33 0.471 2 1 73.124 73.124 3;4 4.4137E-06 23008 TMT1-4 88.335 72.7 231.3 281.1 200.68 190.98 193.08 335.61 218 282 210 189 204 320 3 3 3 3 3 3 67539 3557 848 3529 5717;5718;5719 7463;7464;7465 7465 3 DYFEQYGK Unmodified 1048.4502 0.45017606 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 4.5 0.5 1 1 52.985 52.985 2 0.0042473 15449 TMT1-3 126.41 105.51 704.6 1020.9 818.86 687.46 952 995.13 666 1017 845 690 973 959 3 3 3 3 3 3 108100 3558 601 3530 5720;5721 7466;7467;7468 7466 3 DYFFALAHTVR Unmodified 1338.6721 0.67207093 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 8 0 1 60.542 60.542 3 0.00013885 17697 TMT1-7 102.05 96.554 77.725 63.117 47.999 67.431 40.037 84.138 73 65 51 65 44 80 1 1 1 1 1 1 48488 3559 648 3531 5722 7469 7469 1 DYFGAHTYELLAK Unmodified 1526.7405 0.74054442 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 6 0 2 60.72 60.72 3;4 0.00020286 18415 TMT1-5 88.101 66.228 446.37 632.17 545.37 505.91 604.44 576.51 422 631 562 503 619 557 2 2 2 2 2 2 99821 3560 1260 3532 5723;5724 7470;7471 7471 2 DYFLFNPVTDIEEIIR Unmodified 1982.9989 0.99894395 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 5 0 1 97.957 97.957 3 0.0030564 32492 TMT1-4 58.246 38.588 14.893 18.041 6.3575 23.48 9.9246 14.641 14 18 7 22 11 14 2 2 1 2 2 2 1616.4 3561 2019 3533 5725 7472;7473 7473 2 DYFNVPYPLPK Unmodified 1351.6812 0.68123863 1324 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 7 0 1 69.889 69.889 3 0.0052453 21387 TMT1-6 67.385 44.009 122.68 159.19 166.17 97.651 209.01 179.52 116 160 167 102 210 174 1 1 1 1 1 1 16576 3562 1324 3534 5726 7474 7474 1 DYGNSPLHR Unmodified 1057.4941 0.49410656 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 3.5 0.5 1 1 30.55 30.55 3 0.0013999 7597 TMT1-2 93.325 69.896 276.83 301.06 286.51 175.24 293.09 277.32 261 305 290 181 297 268 2 2 2 2 2 2 32592 3563 901 3535 5727;5728 7475;7476 7475 2 DYGVLLEGSGLALR Unmodified 1461.7827 0.78274359 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 6 0 2 70.803 70.803 2;3 3.9379E-08 22299 TMT1-5 115.24 92.323 247.1 303.99 231.47 195.78 247.08 279.7 233 305 240 196 254 269 3 3 3 3 3 3 194790 3564 949 3536 5729;5730 7477;7478;7479 7479 3 DYGVYLEDSGHTLR Unmodified 1623.7529 0.75290002 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 0 3.5 0.5 1 1 50.102 50.102 3 1.8689E-07 14267 TMT1-3 108.71 94.026 122.8 205.95 105.5 157.89 161.99 158.48 116 203 116 153 167 153 2 2 2 2 2 2 50870 3565 1679 3537 5731;5732 7480;7481 7481 2 DYIEEEVIDEK Unmodified 1380.6297 0.62965657 1819 Q15042-3;Q15042;Q15042-4 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes no 0 0 0 0 0 2 0 1 60.596 60.596 3 0.0043207 19080 TMT1-1 70.488 49.535 46.693 34.183 58.177 51.474 42.64 29.697 44 36 58 51 44 29 1 1 1 1 1 1 5364.1 3566 1819 3538 5733 7482 7482 1 DYIVVGSDSGR Unmodified 1166.5568 0.5567664 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 3 0 1 45.745 45.745 2 7.1569E-08 13584 TMT1-2 118.03 86.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3567 1850 3539 5734 7483 7483 1 DYIWNTLNSGR Unmodified 1337.6364 0.6364137 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 62.027 62.027 2 1.4446E-06 18315 TMT1-7 139.32 93.322 200.14 310.07 184.31 183.02 261.56 301.68 189 307 196 182 268 290 2 2 2 2 2 2 40434 3568 271 3540 5735;5736 7484;7485 7485 2 DYLALNEDLR Unmodified 1220.6037 0.60371659 762 P17693;P17693-5;P17693-4 HLA-G HLA class I histocompatibility antigen, alpha chain G yes no 0 0 0 0 0 3 0 1 56.24 56.24 3 0.00038049 17700 TMT1-2 100.88 0 46.956 27.358 19.865 46.264 34.246 37.399 44 29 22 44 36 36 1 1 1 1 1 1 11663 3569 762 3541 5737 7486 7486 1 DYLDFLDDEEDQGIYQSK Unmodified 2191.9433 0.94333915 882 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 0 3 0 1 78.261 78.261 3 0.00011925 26274 TMT1-2 56.215 41.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3570 882 3542 5738 7487 7487 1 DYLDLTASNNFFVDDYAR Unmodified 2137.9593 0.95926398 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 5 0 1 78.702 78.702 3 5.6793E-11 25237 TMT1-4 115.34 103.04 23.333 28.926 21.307 14.444 36.223 22.418 22 29 22 15 36 22 1 1 1 1 1 1 9917.7 3571 2789 3543 5739 7488 7488 1 DYLHLPPEIVPATLR Unmodified 1732.9512 0.9512059 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 0 6 0 1 66.935 66.935 3 0.0057224 20769 TMT1-5 55.186 32.954 115.71 121.28 106.9 71.28 113.67 127.87 109 123 109 73 116 123 2 2 2 2 2 2 13793 3572 1137 3544 5740 7489;7490 7489 2 DYLHYIR Unmodified 978.49232 0.49231565 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 0 5 0 1 45.24 45.24 3 0.0030985 12127 TMT1-4 100.74 49.054 98.901 206.74 154.37 131.21 147.54 157.82 94 203 160 131 152 152 1 1 1 1 1 1 19886 3573 1428 3545 5741 7491 7491 1 DYLIDGSR Unmodified 937.45051 0.45051041 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 3 0.816 1 1 1 45.056 45.056 2 7.4135E-05 13366 TMT1-2 157.33 85.987 7343.9 9357.5 8969.2 6082.3 7621 9901 6938 9401 9093 6185 7878 9492 5 5 5 5 5 5 1155700 3574 776 3546 5742;5743;5744 7492;7493;7494;7495;7496 7495 5 DYLLCDYNR Unmodified 1230.5339 0.53392246 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 4 0.816 1 1 1 52.572 52.572 2 3.2078E-07 15266 TMT1-3 167.04 117.21 958.03 1406.3 1179.5 933.71 1186.5 1390.3 906 1401 1211 939 1221 1336 2 2 2 2 2 2 238710 3575 1144;1145 3547 5745;5746;5747 7497;7498;7499 7498 3 DYLLCDYNRDGDSYR Unmodified 1923.8057 0.80574023 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 3 0 1 49.965 49.965 3 0.002676 15250 TMT1-2 55.213 47.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3576 1144;1145 3548 5748 7500 7500 1 DYLPLVLGPTAMR Unmodified 1444.7748 0.77482144 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 7.67 0.471 1 2 73.534 73.534 2;3 5.9319E-08 22838 TMT1-7 125.23 86.204 99.055 160.76 167.54 91.932 172.85 174.16 94 160 168 95 175 168 3 3 3 2 3 3 66177 3577 489 3549 5749;5750;5751 7501;7502;7503;7504 7503 4 DYLQLLR Unmodified 919.51272 0.51271674 37 L0R6Q1 SLC35A4 yes yes 0 0 0 0 0 7 0 1 62.272 62.272 2 0.033457 18346 TMT1-6 89.123 30.436 201.09 161.63 149.74 89.997 203.09 148.77 189 167 152 94 203 145 1 1 1 1 1 1 17096 3578 37 3550 5752 7505 7505 1 DYLSSATDNPTASSLFAQR Unmodified 2042.9545 0.95451296 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 5 0 1 63.551 63.551 3 5.8715E-13 19311 TMT1-4 94.856 79.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3579 20 3551 5753 7506 7506 1 DYLTLNEDLR Unmodified 1250.6143 0.61428128 689 P13747 HLA-E HLA class I histocompatibility antigen, alpha chain E yes yes 0 0 0 0 0 3 0 1 58.293 58.293 2 0.0071207 18544 TMT1-2 88.441 37.563 77.493 62.472 87.482 56.408 94.199 75.13 73 65 87 58 95 73 2 2 2 2 2 2 8173.7 3580 689 3552 5754 7507;7508 7508 2 DYNLNDILLQLGIEEAFTSK Unmodified 2295.1634 0.1634431 408 P01011 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 0 0 0 0 0 7 0 1 99.684 99.684 4 0.025983 32426 TMT1-6 35.834 19.892 0 15.855 6.3107 7.0055 14.321 30.505 0 15 7 7 15 29 0 1 1 1 1 1 982.59 3581 408 3553 5755 7509 7509 1 DYNVTANSK Unmodified 1010.4669 0.46688876 385 P00338;P00338-3;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 4.5 0.5 1 1 38.081 38.081 2;3 4.2983E-06 9548 TMT1-3 163.38 111.65 684.92 1288.1 1013.9 833.21 1127.2 1303.5 650 1270 1046 837 1157 1253 3 3 3 3 3 3 124140 3582 385 3554 5756;5757 7510;7511;7512 7510 3 DYPDFSPSVDAEAIQK Unmodified 1780.8156 0.81555986 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 4 0 1 62.681 62.681 3 1.6373E-11 19315 TMT1-3 119.31 99.186 107.37 229.59 153.69 90.61 158.04 150.06 102 225 159 94 160 145 2 2 2 2 2 2 36047 3583 670 3555 5758 7513;7514 7514 2 DYPLIPVGK Unmodified 1000.5593 0.55933258 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6 0 1 60.225 60.225 2 0.00040075 18181 TMT1-5 93.429 59.351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3584 457 3556 5759 7515 7515 1 DYPVVSIEDPFDQDDWAAWSK Unmodified 2482.0965 0.096485745 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 5 0 2 87.361 87.361 3;4 3.2326E-24 28609 TMT1-4 137.05 123.18 99.792 155.26 48.195 107.04 83.426 145.79 94 153 51 102 88 139 4 4 2 4 3 4 23576 3585 581 3557 5760;5761 7516;7517;7518;7519 7516 4 DYPVVSIEDPFDQDDWGAWQK Unmodified 2509.1074 0.10738478 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 4.5 1.5 1 2 3 2 85.403 85.403 3;4;5 1.9171E-18 27755 TMT1-4 124.63 117.6 825.93 869.09 753.85 612.96 992.85 877.77 778 881 774 619 1004 850 13 13 13 13 12 13 503440 3586 514 3558 5762;5763;5764;5765;5766;5767;5768;5769 7520;7521;7522;7523;7524;7525;7526;7527;7528;7529;7530;7531;7532 7524 13 DYQGPLKEHEVTIFVR Unmodified 1929.9949 0.99486163 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 6 0 1 51.759 51.759 4 1.3796E-06 14848 TMT1-5 95.954 73.799 305.87 404.14 368.06 315.61 358.65 434.29 289 405 377 315 371 417 1 1 1 1 1 1 17954 3587 1283 3559 5770 7533 7533 1 DYSGQGVVK Unmodified 951.46616 0.46616048 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 39.875 39.875 2 0.00011071 10043 TMT1-4 150.17 89.816 672.12 1256 1208.4 811.86 1123 1301.5 639 1242 1223 828 1152 1251 3 3 3 3 3 3 268420 3588 250 3560 5771;5772 7534;7535;7536 7536 3 DYSNFDQEFLNEK Unmodified 1647.7053 0.70528113 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 4 0 1 64.297 64.297 3 4.3391E-12 19884 TMT1-3 151.99 122.67 222.36 278.52 263.81 235.7 230.51 221.55 210 280 270 234 238 214 1 1 1 1 1 1 54026 3589 1596 3561 5773 7537 7537 1 DYSSGFGGK Unmodified 916.39266 0.39266118 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 43.298 43.298 2 0.0018916 11505 TMT1-5 110.87 86.717 177.34 215.72 128.53 155.94 134.64 287.18 167 216 138 152 145 273 1 1 1 1 1 1 18929 3590 1766 3562 5774 7538 7538 1 DYTGEDVTPQNFLAVLR Unmodified 1936.9531 0.95305639 2472 Q99538-3;Q99538-2;Q99538 LGMN Legumain yes no 0 0 0 0 0 5.5 0.5 1 1 77.605 77.605 3 9.032E-08 24818 TMT1-4 100.41 96.69 61.857 33.548 35.002 36.477 41.717 76.628 58 36 36 36 44 73 1 1 1 1 1 1 7642.3 3591 2472 3563 5775;5776 7539;7540 7539 2 DYTQMNELQR Unmodified 1296.5768 0.57684991 528 P07203;P07203-2 GPX1 Glutathione peroxidase 1 yes no 0 0 0 0 0 3 0 1 43.887 43.887 2 0.00010257 12830 TMT1-2 139.15 83.245 68.579 133.37 82.937 63.963 113.71 136.4 65 131 87 65 116 131 1 1 1 1 1 1 20266 3592 528 3564 5777 7541 7541 1 DYTYEELLNR Unmodified 1314.6092 0.6091959 803 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 0 3 0 1 57.895 57.895 2 0.00017753 18341 TMT1-2 131.22 116.53 130.46 143.26 133.1 156.37 155.83 126.67 123 145 138 153 160 123 2 2 2 2 2 2 31017 3593 803 3565 5778 7542;7543 7542 2 DYVAPTANLDQK Unmodified 1333.6514 0.65139506 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 49.746 49.746 3 0.0012219 14136 TMT1-3 77.185 53.716 108.14 114.08 122.54 70.924 83.029 137.28 102 116 123 73 87 131 1 1 1 1 1 1 38405 3594 2071 3566 5779 7544 7544 1 DYVISLGVVKPLLSFISPSIPITFLR Unmodified 2873.667 0.66703912 78;85 O00629;O00505 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 0 0 0 0 1 9 0 1 103.06 103.06 3 0.022104 32212 TMT1-8 33.594 27.499 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3595 85;78 3567 5780 7545 7545 1 DYVLDCNILPPLLQLFSK Unmodified 2147.1337 0.1336633 1262 P52294 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 0 0 0 0 0 9 0 2 101.64 101.64 3;4 1.2787E-10 31609 TMT1-8 98.062 86.542 55.167 88.977 55.934 51.348 56.445 84.735 52 88 59 51 59 81 3 4 4 4 4 4 5851.8 3596 1262 3568 5781;5782 7546;7547;7548;7549 7548 4 DYVSQFEGSALGK Unmodified 1399.662 0.66195975 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 5.5 0.5 1 1 61.971 61.971 3 1.4399E-11 18676 TMT1-4 145 114.67 192.33 283.86 256.43 178.9 193.93 327.06 182 283 261 181 204 312 2 2 2 2 2 2 38886 3597 431 3569 5783;5784 7550;7551 7550 2 DYYFALAHTVR Unmodified 1354.667 0.66698555 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form no no 0 0 0 0 0 7 0 1 52.991 52.991 3 0.0025232 14656 TMT1-6 76.522 51.964 84.968 93.157 67.581 120.93 97.498 105.95 80 94 73 116 102 102 1 1 1 1 1 1 24934 3598 515 3570 5785 7552 7552 1 EAAAAAAAAVAAAAAAAAAAEPYPVSGAK Unmodified 2453.2551 0.25505207 2035 Q6P6C2;Q6P6C2-1 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 0 0 8 0 1 87.702 87.702 4 3.8135E-06 28229 TMT1-7 55.662 47.168 30.849 28.426 20.951 22.27 28.02 37.576 29 29 22 22 29 36 1 1 1 1 1 1 2598.5 3599 2035 3571 5786 7553 7553 1 EAAALGSR Unmodified 773.40317 0.40316629 266 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 0 0 0 0 0 3 0 1 29.167 29.167 2 0.013027 7033 TMT1-2 95.815 39.094 68.304 155.27 110.58 118.25 103.63 144.15 65 152 116 116 109 138 1 1 1 1 1 1 13166 3600 266 3572 5787 7554 7554 1 EAAASGLPLMVIIHK Unmodified 1548.8698 0.86978446 379 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 0 8 0 1 67.074 67.074 3 1.3471E-07 20305 TMT1-7 105.41 92.536 92.053 131.39 106.81 62.416 120.34 158.6 87 131 109 65 123 152 1 1 1 1 1 1 18273 3601 379 3573 5788 7555 7555 1 EAAEGLR Unmodified 744.37662 0.37661719 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 2 0 3 28.753 28.753 2 5.8446E-08 6513 TMT1-1 143.02 19.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3602 3010;3014 3574 5789;5790;5791 7556;7557;7558 7557 3 EAAEMGK Unmodified 734.32689 0.3268898 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 3.5 0.5 1 1 34.249 34.249 2 0.0091139 8035 TMT1-3 113.7 60.53 628.04 657.38 468.22 410.23 822.06 580.96 591 665 489 415 823 567 2 2 2 2 2 2 51077 3603 1490 3575 5792;5793 7559;7560 7560 2 EAAENSLVAYK Unmodified 1193.5928 0.59281755 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 4.5 0.5 1 1 49.132 49.132 3 3.6624E-05 13870 TMT1-3 108.9 89.163 1235 1551.1 1395.2 1160.6 1517 1636.7 1166 1558 1429 1164 1555 1576 3 3 3 3 3 3 259920 3604 1422 3576 5794;5795 7561;7562;7563 7561 3 EAAEQDVEK Unmodified 1017.4615 0.46146903 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 0 2 0 1 35.037 35.037 2 0.0014978 8997 TMT1-1 80.763 26.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3605 897 3577 5796 7564 7564 1 EAAIVDPVQPQK Unmodified 1293.6929 0.69286595 1905 Q16775;Q16775-2;Q16775-3 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 0 0 0 4 0 1 49.897 49.897 3 0.012518 14210 TMT1-3 56.205 24.566 130.25 158.84 156.73 139.17 123.69 202.21 123 160 160 138 131 193 1 1 1 1 1 1 11740 3606 1905 3578 5797 7565 7565 1 EAAIWELEER Unmodified 1244.6037 0.60371659 2628 Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 0 2 0 1 59.425 59.425 3 0.0033099 18634 TMT1-1 77.379 43.001 7.3125 22.679 14.14 15.552 0 30.914 7 22 15 15 0 29 1 1 1 1 0 1 2130.3 3607 2628 3579 5798 7566 7566 1 EAALGAGFSDK Unmodified 1064.5138 0.51383895 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 5 0 1 49.58 49.58 2 2.1509E-07 13838 TMT1-4 152.54 106.11 191.79 243.33 200.35 205.24 249.85 308.41 181 244 208 203 258 296 1 1 1 1 1 1 24822 3608 1312 3580 5799 7567 7567 1 EAALTSEEVGADLEQVEVLQK Unmodified 2257.1325 0.1325369 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 73.277 73.277 4 2.6881E-07 24344 TMT1-2 80.316 63.238 38.98 105.37 31.847 37.449 58.184 52.706 37 102 37 37 59 51 2 2 2 2 2 2 6888.8 3609 1737 3581 5800 7568;7569 7568 2 EAALVQQEEEKAEQR Unmodified 1756.8592 0.85915601 1813 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 1 2 0 1 46.306 46.306 3 0.0077096 13482 TMT1-1 58.723 34.881 30.163 105.31 71.012 33.758 72.206 75.758 29 102 73 36 73 73 1 1 1 1 1 1 6992.5 3610 1813 3582 5801 7570 7570 1 EAAPDAGAEPITADSDPAYSSK Unmodified 2161.9651 0.96513722 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 2 0 1 50.581 50.581 3 8.4082E-05 15149 TMT1-1 62.611 54.132 23.307 36.408 19.434 46.423 27.166 30.139 22 36 22 44 29 29 1 1 1 1 1 1 6727.4 3611 2162 3583 5802 7571 7571 1 EAAQEAVK Unmodified 844.42905 0.42904669 226;227;170 O43390;O43390-3;O43390-2;O43390-4;O60506-2;O60506;O60506-3;O60506-4;O60506-5 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 2.5 0.5 1 1 33.006 33.006 2 0.0039706 8472 TMT1-2 128.38 49.867 399.91 317.65 325.52 307.86 498.61 237.35 376 329 333 308 498 236 2 2 2 2 2 2 31507 3612 170;226;227 3584 5803;5804 7572;7573 7573 2 EAASLSEWLSATETELVQK Unmodified 2091.0372 0.037179952 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 5 0 1 86.759 86.759 3 8.4434E-10 28369 TMT1-4 97.579 73.292 23.38 29.056 13.345 22.99 13.842 23.057 22 29 15 22 15 22 1 1 1 1 1 1 2870.5 3613 1138 3585 5805 7574 7574 1 EAATQAQQTLGSTIDK Unmodified 1660.8268 0.82679325 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 5 0 1 50.809 50.809 3 1.3013E-06 14354 TMT1-4 94.922 74.54 53.847 111.46 52.838 66.428 78.032 75.591 51 109 58 65 80 73 1 1 1 1 1 1 9385.5 3614 1146 3586 5806 7575 7575 1 EAAWAISNLTISGR Unmodified 1487.7732 0.77324153 78;85 O00629;O00505 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 0 0 0 0 0 7 0 1 65.564 65.564 3 0.00066662 19646 TMT1-6 74.789 53.538 23.211 36.142 35.727 21.099 43.487 45.663 22 36 36 22 44 44 1 1 1 1 1 1 7978.3 3615 85;78 3587 5807 7576 7576 1 EAAYHPEVAPDVR Unmodified 1452.6997 0.69974224 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2 0.816 1 1 1 37.401 37.401 3 1.3496E-16 10193 TMT1-2 169.79 141.03 1290.5 1644.9 1733.1 1385.2 1460.8 2088.2 1220 1655 1756 1387 1526 1998 6 6 6 6 6 6 1293200 3616 3010 3588 5808;5809;5810 7577;7578;7579;7580;7581;7582 7581 6 EACDQHGPDLYPK Unmodified 1528.6616 0.66164217 1040 P36551 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 0 0 0 0 0 3 0 1 40.571 40.571 3 0.0080528 11557 TMT1-2 58.595 45.614 68.973 48.125 89.034 41.868 48.798 76.426 65 51 87 44 51 73 1 1 1 1 1 1 8490.2 3617 1040 3589 5811 7583 7583 1 EADAIDDTLSSK Unmodified 1263.583 0.58304073 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 2.5 0.5 1 1 52.135 52.135 3 2.712E-05 15784 TMT1-1 103.75 80.146 131.74 136.19 105.25 86.576 119.2 159.7 124 138 109 87 123 153 2 2 2 2 2 2 17278 3618 3011 3590 5812;5813 7584;7585 7584 2 EADDIVNWLK Unmodified 1201.5979 0.59790293 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 5.33 0.471 2 1 71.939 71.939 2;3 1.7024E-05 22666 TMT1-4 152.34 97.936 432.54 649.65 510.36 346.75 402.54 637.71 409 646 524 352 421 609 3 3 3 3 3 3 271490 3619 530 3591 5814;5815;5816 7586;7587;7588 7587 3 EADESLNFEEQILEAAK Unmodified 1934.9109 0.91091681 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.67 0.85 1 4 5 2 77.251 77.251 2;3;4 9.0498E-25 24593 TMT1-3 150.39 134.62 2180.4 3086.8 2783.6 2115.9 2449.4 3125.7 2062 3083 2834 2128 2536 2997 25 25 23 24 24 24 1013900 3620 3010 3592 5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828 7589;7590;7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614 7613 26 EADGSETPEPFAAEAK Unmodified 1647.7264 0.7264105 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 50.916 50.916 3 1.0587E-11 15325 TMT1-1 122.93 96.496 154 157.65 132.09 157.01 124.9 112.63 145 160 138 153 130 109 2 2 2 2 2 2 24272 3621 2071 3593 5829 7615;7616 7616 2 EADIDGDGQVNYEEFVQMMTAK Unmodified 2489.0727 0.072655535 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 0 5 0.866 3 2 3 83.525 83.525 3;4 4.0838E-18 27025 TMT1-4 114.46 100.15 477.27 625.19 456.24 472.04 537.41 687.16 450 625 476 466 554 659 13 14 13 14 12 14 164470 3622 621 3594 5830;5831;5832;5833;5834;5835;5836;5837 7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631 7626 15 EAEAAIYHLQLFEELR Unmodified 1930.9789 0.97887721 706 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 0 5.5 1.12 1 1 1 1 70.128 70.128 3 5.1859E-30 21935 TMT1-4 191.96 141.91 530.82 734.49 512.43 417.85 683.37 558.27 501 732 534 422 690 542 7 7 7 7 7 7 306100 3623 706 3595 5838;5839;5840;5841 7632;7633;7634;7635;7636;7637;7638 7635 7 EAEAAIYHLQLFEELRR Unmodified 2087.08 0.079988241 706 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 1 6.5 1.12 1 1 1 1 63.038 63.038 4 6.8407E-28 19158 TMT1-5 166.92 139.21 748.88 1194.8 803.67 837.74 797.1 1010.2 708 1183 847 824 832 969 9 9 9 9 9 9 297090 3624 706 3596 5842;5843;5844;5845 7639;7640;7641;7642;7643;7644;7645;7646;7647 7642 9 EAEAAMFHR Unmodified 1060.476 0.47601366 707 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 0 0 3 0 1 35.796 35.796 3 0.0029208 9641 TMT1-2 81.972 70.916 61.178 79.148 110.45 54.629 116.01 81.97 58 80 109 58 116 80 1 1 1 1 1 1 7696.9 3625 707 3597 5846 7648 7648 1 EAEAASIK Unmodified 817.41815 0.41814765 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.67 0.471 1 2 36.922 36.922 2;3 0.0027496 9006 TMT1-3 94.302 40.097 1048.5 1026.2 1089.8 1141.2 1133.9 1367.3 988 1048 1116 1123 1179 1313 4 4 4 4 4 4 323730 3626 776 3598 5847;5848;5849 7649;7650;7651;7652 7651 4 EAEAMALLAEAER Unmodified 1402.6762 0.67622961 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 3.2 0.748 1 2 2 68.051 68.051 2;3 7.3842E-05 21287 TMT1-3 95.631 64.804 122.92 160.63 142.75 132.57 111.85 136.45 116 161 145 131 116 131 3 4 3 4 3 4 37049 3627 1304 3599 5850;5851;5852;5853;5854 7653;7654;7655;7656;7657 7656 5 EAEDGFR Unmodified 822.3508 0.35079637 2926 Q9UNF0;Q9UNF0-2;Q9BY11 PACSIN2;PACSIN1 Protein kinase C and casein kinase substrate in neurons protein 2;Protein kinase C and casein kinase substrate in neurons protein 1 yes no 0 0 0 0 0 2 0 1 31.946 31.946 2 0.001277 7767 TMT1-1 108.92 95.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3628 2926 3600 5855 7658 7658 1 EAEEHQETQCLR Unmodified 1528.6576 0.65761943 2502 Q99969 RARRES2 Retinoic acid receptor responder protein 2 yes yes 0 0 0 0 0 2 0 1 26.24 26.24 3 2.9683E-07 5544 TMT1-1 98.898 85.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3629 2502 3601 5856 7659 7659 1 EAEGAPQVEAGK Unmodified 1184.5673 0.56733108 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 2.5 0.5 1 1 38.131 38.131 2;3 5.1652E-10 10521 TMT1-2 156.14 108.84 408.51 459.76 382.1 302.54 428.11 500.53 385 464 393 305 439 481 3 3 3 3 3 3 73323 3630 1597 3602 5857;5858 7660;7661;7662 7662 3 EAEGAPQVEAGKR Unmodified 1340.6684 0.66844211 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 2.5 0.5 1 1 32.303 32.303 3 8.1809E-11 8184 TMT1-2 135.91 112.53 558.4 623.58 480.13 511.91 550.23 776.34 526 629 502 504 574 743 2 2 2 2 2 2 67144 3631 1597 3603 5859;5860 7663;7664 7664 2 EAEGQLQK Unmodified 901.45051 0.45051041 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3 0 1 35.041 35.041 3 0.0054177 9363 TMT1-2 83.265 25.984 115.45 136.75 137.44 69.29 122.67 81.78 109 138 138 73 123 80 1 1 1 1 1 1 11903 3632 1833 3604 5861 7665 7665 1 EAEGSSAEYKK Unmodified 1197.5513 0.55134667 1175 P49321-2;P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 1 4 0 1 32.434 32.434 3 0.033109 7313 TMT1-3 53.034 48.565 115.42 175.53 109.18 117.17 165.21 118.94 109 174 116 116 167 116 1 1 1 1 1 1 10245 3633 1175 3605 5862 7666 7666 1 EAEILHK Unmodified 838.45487 0.45486751 169 O43353 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 yes yes 0 0 0 0 0 4 0 1 38.522 38.522 3 0.0045085 9734 TMT1-3 60.788 20.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3634 169 3606 5863 7667 7667 1 EAEKELHEK Unmodified 1111.551 0.55095274 1752;2757 Q14141-2;Q14141-4;Q14141;Q9NVA2 SEPT6;SEPT11 Septin-6;Septin-11 no no 0 0 0 0 1 3.25 0.829 1 1 2 30.9 30.9 3;4 0.00569 6526 TMT1-3 76.143 39.558 1000.5 1181.7 1082.7 951.62 1064 1035.6 944 1191 1110 948 1093 1000 5 5 5 5 5 5 80729 3635 1752;2757 3607 5864;5865;5866;5867 7668;7669;7670;7671;7672 7671 5 EAEKLESEHPDQAQAILSR Unmodified 2150.0604 0.060375011 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 3 0 1 44.339 44.339 4 1.6885E-09 13031 TMT1-2 92.932 78.891 146.58 158.39 117.64 116.71 163.04 182.96 138 160 123 116 167 176 1 1 1 1 1 1 20634 3636 1546 3608 5868 7673 7673 1 EAELDVNEELDKK Unmodified 1530.7413 0.74133228 1107 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 0 1 3 0 2 51.38 51.38 3;4 4.8802E-11 15807 TMT1-2 134.98 106.69 146.19 183.22 161.38 170.15 146.82 126.93 138 184 167 167 152 123 1 1 1 1 1 1 13524 3637 1107 3609 5869;5870 7674;7675 7674 2 EAELGAR Unmodified 744.37662 0.37661719 662;2634 P11940-2;P11940;Q4VXU2;Q4VXU2-2;Q9H361 PABPC1;PABPC1L;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3 no no 0 0 0 0 0 2 0 1 29.638 29.638 2 0.0086985 6840 TMT1-1 115.46 52.153 84.485 154.41 96.789 87.198 112.94 127.9 80 152 102 87 116 123 1 1 1 1 1 1 12549 3638 662;2634 3610 5871 7676 7676 1 EAELKEAEK Unmodified 1045.5292 0.52915466 1752;2757 Q14141-2;Q14141-4;Q14141;Q9NVA2 SEPT6;SEPT11 Septin-6;Septin-11 no no 0 0 0 0 1 4 0 1 38.25 38.25 3 0.041493 9619 TMT1-3 54.7 9.1016 183.47 320.56 451.44 319.29 189.58 387.94 175 320 449 320 208 369 1 1 1 1 1 1 15670 3639 1752;2757 3611 5872 7677 7677 1 EAELTEINRR Unmodified 1229.6364 0.6364137 1562 Q01970-2;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 0 0 1 2 0 1 35.972 35.972 3 0.0001618 9366 TMT1-1 81.263 57.032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3640 1562 3612 5873 7678 7678 1 EAENFHEEDDVDVRPAR Unmodified 2026.8981 0.89806071 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 1 2 0 1 36.33 36.33 4 1.7109E-24 9506 TMT1-1 147.75 127.47 169.63 196.26 178.15 113.52 141.01 188.92 160 198 181 116 146 181 1 1 1 1 1 1 38515 3641 1635 3613 5874 7679 7679 1 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK Unmodified 3310.5268 0.52681154 1932 Q3ZCM7 TUBB8 Tubulin beta-8 chain yes yes 0 0 0 0 0 7 0 1 70.519 70.519 5 3.9292E-06 21638 TMT1-6 53.968 0 68.612 117.27 91.095 72.519 97.892 159.24 65 116 94 73 102 152 1 1 1 1 1 1 19408 3642 1932 3614 5875 7680 7680 1 EAESLIAK Unmodified 859.4651 0.46509784 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 4.5 0.5 1 1 47.121 47.121 2 0.0011715 13100 TMT1-3 144.38 41.662 541.77 726.1 842.82 516.52 666.75 818.85 513 730 843 530 687 786 3 3 3 3 3 3 111550 3643 1504 3615 5876;5877 7681;7682;7683 7681 3 EAESSPFVER Unmodified 1149.5302 0.5302173 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 2.5 0.5 1 1 39.829 39.829 2 2.6478E-09 10960 TMT1-1 170.5 120.67 360.77 529.51 412.49 309.13 329.91 457.49 341 527 425 311 344 438 2 2 2 2 2 2 95433 3644 708 3616 5878;5879 7684;7685 7684 2 EAEVQAK Unmodified 773.39193 0.3919329 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 0 3 0 1 32.258 32.258 2 0.021823 8209 TMT1-2 96.19 19.133 208.44 168.22 171.34 129.74 171.71 126.22 196 174 174 131 174 123 1 1 1 1 1 1 16572 3645 269 3617 5880 7686 7686 1 EAEYFELPELVR Unmodified 1493.7402 0.74021007 2389 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 0 3.67 0.471 1 2 71.901 71.901 2;3 3.7477E-07 22835 TMT1-3 124.1 96.332 53.736 126.26 58.848 81.607 123.66 66.827 51 123 65 80 124 66 2 2 2 2 2 2 35478 3646 2389 3618 5881;5882;5883 7687;7688;7689 7688 3 EAFDLFDADGTGTIDVK Unmodified 1812.8418 0.84177461 1078 P41208 CETN2 Centrin-2 yes yes 0 0 0 0 0 4 0 1 76.598 76.598 3 1.9483E-07 24688 TMT1-3 95.761 75.334 30.771 35.765 27.769 29.374 35.536 22.438 29 36 29 29 36 22 1 1 1 1 1 1 8371 3647 1078 3619 5884 7690 7690 1 EAFEISK Unmodified 822.41233 0.41233399 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 5 0 1 49.788 49.788 2 0.011223 13876 TMT1-4 104.75 32.608 864.23 1107.7 966.81 777.56 748.3 1232.3 816 1111 991 777 790 1176 2 2 2 2 2 2 119070 3648 1588 3620 5885 7691;7692 7691 2 EAFGQKIGHFQLMQGK Unmodified 1817.9247 0.92467357 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 1 8 0 1 40.337 40.337 5 0.033252 9727 TMT1-7 39.509 5.8117 868.22 1152.2 1341 891.45 1120.1 1067.1 822 1159 1344 908 1145 1031 1 1 1 1 1 1 77476 3649 898 3621 5886 7693 7693 1 EAFLNTEDKGDSLDSVEALIK Unmodified 2293.1325 0.1325369 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 5 0 2 73.211 73.211 3;4 1.6825E-13 23114 TMT1-4 105.92 80.726 222.97 335.46 291.87 184.77 234.79 256.6 211 334 297 189 241 247 2 2 2 2 2 2 25392 3650 1737 3622 5887;5888 7694;7695 7695 2 EAFLQEVWK Unmodified 1148.5866 0.58660996 903 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 0 6 0 1 68.521 68.521 2 0.0010119 21434 TMT1-5 125.57 67.971 61.196 86.753 100.98 86.78 121.86 81.803 58 87 102 87 123 80 1 1 1 1 1 1 8504.8 3651 903 3623 5889 7696 7696 1 EAFNMIDQNR Unmodified 1236.5557 0.55572054 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 0 3.33 1.7 1 1 1 50.065 50.065 2;3 5.0876E-14 14278 TMT1-3 182.16 129.57 886.93 1193.1 1046.9 903.38 778.9 1391.3 838 1194 1075 897 830 1326 4 4 4 4 4 4 292390 3652 115;879 3624 5890;5891;5892 7697;7698;7699;7700 7699 4 EAFQLFDR Unmodified 1024.4978 0.49779495 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 0 4.75 2.28 1 1 1 1 60.095 60.095 2 3.8249E-27 17896 TMT1-4 215.42 118.32 6893.8 9078.2 8207.4 6585.3 8279.4 10400 6513 9098 8392 6615 8546 9978 8 8 8 8 8 8 1768700 3653 1356 3625 5893;5894;5895;5896 7701;7702;7703;7704;7705;7706;7707;7708 7704 8 EAFQPQEPDFPPPPPDLEQLR Unmodified 2446.1805 0.18049015 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 0.707 1 2 1 71.335 71.335 3;4 6.0526E-14 22497 TMT1-3 109.85 106.81 788.58 985.27 828.47 874.56 852.75 1032.1 744 989 860 860 887 991 21 22 22 22 21 22 185090 3654 776 3626 5897;5898;5899;5900 7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730 7722 22 EAFQSVVLPAFEK Unmodified 1463.766 0.76603089 2027 Q6P2E9-2;Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 0 7 0 1 71.593 71.593 3 9.4005E-05 22041 TMT1-6 92.939 63.132 46.557 65.103 54.924 82.861 69.435 90.761 44 65 58 80 73 87 1 1 1 1 1 1 11047 3655 2027 3627 5901 7731 7731 1 EAFSLFDK Unmodified 955.4651 0.46509784 621 P0DP25;P0DP24;P0DP23;P27482 CALML3 Calmodulin-like protein 3 yes no 0 0 0 0 0 6 0 1 65.26 65.26 2 0.0028666 20126 TMT1-5 134.48 45.183 292.36 302.71 380.15 328.29 460.06 449.52 276 309 383 329 469 434 2 2 2 2 2 2 50545 3656 621 3628 5902 7732;7733 7732 2 EAFSLFDKDGDGTITTK Unmodified 1843.884 0.88397377 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 1 5.5 2.06 1 3 2 63.942 63.942 3;4 5.2484E-27 19303 TMT1-5 165.8 141.97 3819.7 5662 4614.9 3548.3 4415.3 5695.4 3612 5636 4743 3574 4564 5461 9 9 9 9 9 9 736910 3657 621 3629 5903;5904;5905;5906;5907;5908 7734;7735;7736;7737;7738;7739;7740;7741;7742 7735 9 EAFVVEEWVK Unmodified 1234.6234 0.6233894 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 5 0 2 69.672 69.672 2;3 0.00049782 21662 TMT1-4 98.943 56.942 216.31 213.14 252.6 187.42 217.91 257.08 204 218 254 189 225 247 3 3 3 3 3 3 48117 3658 1021 3630 5909;5910 7743;7744;7745 7743 3 EAGAGGLAIAVEGPSK Unmodified 1425.7464 0.74635808 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.75 1.64 1 1 2 55.395 55.395 3;4 6.9198E-16 15981 TMT1-4 132.81 102.75 3409.6 4047 4029.9 2944.9 3658.7 4442.1 3219 4083 4086 2977 3773 4265 9 9 9 9 9 9 750930 3659 831 3631 5911;5912;5913;5914 7746;7747;7748;7749;7750;7751;7752;7753;7754 7750 9 EAGAGGLAIAVEGPSKAEISFEDR Unmodified 2373.1812 0.18121843 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.5 0.5 1 1 62.943 62.943 4 2.4935E-29 19024 TMT1-4 134.62 103.44 315.69 443.88 306.06 268.48 330.01 387.13 298 442 320 268 340 372 3 3 3 3 3 3 42435 3660 831 3632 5915;5916 7755;7756;7757 7756 3 EAGDEFELR Unmodified 1064.4775 0.47745344 1612 Q07817-2;Q07817-3;Q07817 BCL2L1 Bcl-2-like protein 1 yes no 0 0 0 0 0 2 0 1 46.901 46.901 2 0.00081671 13658 TMT1-1 128.36 104.57 108.16 121.68 113.82 86.315 105.91 120.63 102 123 116 87 109 116 1 1 1 1 1 1 14839 3661 1612 3633 5917 7758 7758 1 EAGDVCYADVQK Unmodified 1353.5871 0.58708025 1686 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 0 3 0 1 45.795 45.795 3 0.015982 13576 TMT1-2 53.448 29.597 84.742 140.02 65.839 96.958 98.894 97.382 80 138 73 94 102 94 1 1 1 1 1 1 8057.6 3662 1686 3634 5918 7759 7759 1 EAGDVCYADVYR Unmodified 1416.598 0.59797928 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 2.33 0.471 2 1 47.354 47.354 2;3 5.5707E-10 14134 TMT1-2 155.26 115.39 231.04 297.62 231.57 179.65 232.91 287.57 218 298 239 181 240 276 3 3 3 3 3 3 54906 3663 1615 3635 5919;5920;5921 7760;7761;7762 7762 3 EAGELKPEEEITVGPVQK Unmodified 1952.0102 0.01023692 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 4 0 1 53.974 53.974 4 1.3601E-10 15826 TMT1-3 113.69 96.607 199.87 302.87 234.51 231.63 249.11 294.57 189 301 244 229 258 283 1 1 1 1 1 1 31194 3664 1286 3636 5922 7763 7763 1 EAGGAFGK Unmodified 735.35515 0.35515346 2880 Q9UII2;Q9UII2-3;Q9UII2-2 ATPIF1 ATPase inhibitor, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 38.75 38.75 2 0.0038532 9677 TMT1-5 77.923 59.14 432.43 660.13 520.39 399.07 610.82 594.45 409 656 536 404 621 574 1 1 1 1 1 1 49364 3665 2880 3637 5923;5924 7764;7765 7765 2 EAGGAFGKR Unmodified 891.45626 0.45626449 2880 Q9UII2;Q9UII2-3;Q9UII2-2 ATPIF1 ATPase inhibitor, mitochondrial yes no 0 0 0 0 1 7 0 1 31.503 31.503 3 0.028755 6253 TMT1-6 59.35 32.212 53.75 150.05 36.329 45.021 48.14 91.368 51 145 44 44 51 87 1 1 1 1 1 1 2476.9 3666 2880 3638 5925 7766 7766 1 EAGITEK Unmodified 746.38103 0.38103386 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 2.5 0.5 1 1 35.897 35.897 3 0.029014 9613 TMT1-2 60.76 40.973 656.55 645.49 555.6 477.48 572.35 634.99 618 657 572 477 589 611 2 2 2 2 2 2 24672 3667 1352 3639 5926;5927 7767;7768 7768 2 EAGLAPVPMIIFAK Unmodified 1455.816 0.81595797 503 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 0 0 8 0 1 79.92 79.92 3 9.0749E-09 25335 TMT1-7 100.55 75.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3668 503 3640 5928 7769 7769 1 EAGLSNLFGESAGDPQESIVFLSTLTR Unmodified 2837.4083 0.40831783 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 6 0 1 90.975 90.975 3 8.4049E-09 30009 TMT1-5 63.297 49.616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3669 2172 3641 5929 7770 7770 1 EAHEPLAVADAK Unmodified 1249.6303 0.63026569 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 2.5 0.5 1 1 39.11 39.11 3 1.7762E-07 10817 TMT1-1 102.62 79.395 177.12 251.8 134.73 138.3 239.38 245.81 167 250 145 138 243 237 1 1 1 1 1 1 25676 3670 2977 3642 5930;5931 7771;7772 7771 2 EAIAELER Unmodified 929.48181 0.48181054 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 44.988 44.988 2 0.0087458 12900 TMT1-1 101.43 24.148 139.32 119.68 107.27 62.526 113.01 158.81 131 123 109 65 116 152 1 1 1 1 1 1 20909 3671 1833 3643 5932 7773 7773 1 EAIDSYIK Unmodified 937.47566 0.47566253 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4.5 0.5 1 1 52.275 52.275 2 0.00075436 15158 TMT1-3 148.38 89.177 748.76 1162.3 1030.8 883.71 1004 1229.2 709 1156 1057 882 1039 1180 3 3 3 3 3 3 139110 3672 1540 3644 5933;5934 7774;7775;7776 7774 3 EAIEGTYIDK Unmodified 1137.5554 0.55536941 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 0 3 0 1 50.54 50.54 2 0.0025674 15485 TMT1-2 98.943 60.586 38.001 58.212 56.102 66.677 54.473 91.188 36 58 58 65 58 87 1 1 1 1 1 1 4497.3 3673 1428 3645 5935 7777 7777 1 EAIEGTYIDKK Unmodified 1265.6503 0.65033243 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 1 5 0 2 46.227 46.227 3;4 0.00061348 12506 TMT1-4 95.401 63.393 758.11 1006.9 674.09 841.15 1084.7 1069.2 715 1005 717 825 1109 1032 2 2 2 2 2 2 57626 3674 1428 3646 5936;5937 7778;7779 7778 2 EAIENATTNAEVLR Unmodified 1529.7686 0.76855009 2572 Q9BY43;Q9BY43-2 CHMP4A Charged multivesicular body protein 4a yes no 0 0 0 0 0 2 0 1 49.161 49.161 3 1.5914E-05 14564 TMT1-1 95.854 78.911 46.647 42.688 58.756 51.306 49.72 36.957 44 44 59 51 51 36 1 1 1 1 1 1 9493.4 3675 2572 3647 5938 7780 7780 1 EAIETIVAAMSNLVPPVELANPENQFR Unmodified 2951.5063 0.50625774 1469 P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 0 8 0 1 104.63 104.63 4 1.2113E-05 33550 TMT1-7 59.957 52.597 7.4097 6.7594 11.304 3.4874 11.21 3.9441 7 7 11 4 11 4 1 1 1 1 1 1 1418 3676 1469 3648 5939 7781 7781 1 EAIEVFIR Unmodified 975.53893 0.53893149 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes yes 0 0 0 0 0 5 0 1 59.694 59.694 2 0.0017957 17793 TMT1-4 84.368 38.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3677 993 3649 5940 7782 7782 1 EAIIPGSVYDR Unmodified 1218.6245 0.62445203 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 4 0 1 51.535 51.535 2 0.022435 14923 TMT1-3 70.389 21.031 46.396 88.4 62.193 58.355 70.818 83.259 44 87 65 58 73 80 1 1 1 1 1 1 9457.5 3678 2328 3650 5941 7783 7783 1 EAILAIHK Unmodified 893.53345 0.53345218 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 6.67 0.471 1 2 46.732 46.732 2;3 0.0061792 12286 TMT1-6 80.438 45.63 2572.4 4245 3010.4 2437.5 3120.8 4031 2434 4200 3130 2448 3223 3865 3 3 3 3 3 3 359220 3679 195 3651 5942;5943;5944 7784;7785;7786 7786 3 EAILDIITSR Unmodified 1129.6343 0.63428844 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 6.5 0.5 1 1 69.433 69.433 2 0.00062735 21837 TMT1-5 111.61 61.774 192.78 277.56 185.62 198.06 271.61 263.01 182 276 196 196 277 254 3 3 3 3 3 3 42645 3680 555 3652 5945;5946 7787;7788;7789 7788 3 EAILEDLQK Unmodified 1057.5655 0.56554017 2910 Q9ULC5-3;Q9ULC5 ACSL5 Long-chain-fatty-acid--CoA ligase 5 yes no 0 0 0 0 0 4 0 1 60.047 60.047 2 0.001865 18224 TMT1-3 111.46 59.46 108.44 99.806 84.327 73.454 69.611 98.218 102 102 87 73 73 94 1 1 1 1 1 1 9291.6 3681 2910 3653 5947 7790 7790 1 EAILEEEDDLWVR Unmodified 1615.773 0.77296676 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 2 0 1 69.492 69.492 2 0.00041216 22450 TMT1-1 94.82 79.248 15.93 14.631 15.272 0 29.558 22.609 15 15 15 0 29 22 1 1 1 0 1 1 2985.7 3682 48 3654 5948 7791 7791 1 EAINVEQAFQTIAR Unmodified 1588.8209 0.82092001 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 5.67 0.471 1 2 68.554 68.554 2;3 1.3857E-18 21412 TMT1-5 164.64 129.96 393.16 392.77 314.51 284.5 322.77 393.74 370 399 326 283 334 378 4 4 4 4 4 4 155580 3683 1237 3655 5949;5950;5951 7792;7793;7794;7795 7794 4 EAIQGGIVR Unmodified 941.52943 0.52942943 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4 0 1 39.017 39.017 2 0.00017055 9931 TMT1-3 147.36 63.265 609.96 660.32 620.18 543.21 708.34 820.86 575 669 635 543 728 789 1 1 1 1 1 1 73565 3684 740 3656 5952 7796 7796 1 EAIQHPADEK Unmodified 1136.5462 0.54620171 2751 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 0 2.5 0.5 1 1 30.517 30.517 3 0.00063956 7480 TMT1-2 96.604 71.682 400.8 513.69 369.9 310.37 515.29 449.01 378 514 385 313 521 435 4 4 4 4 4 4 38943 3685 2751 3657 5953;5954 7797;7798;7799;7800 7800 4 EAKPDELMDSK Unmodified 1261.586 0.58601761 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 1 4 0 2 44.489 44.489 3;4 0.00063711 12165 TMT1-3 96.059 22.178 345.09 659.3 412.82 444.54 451.94 713.05 327 648 438 437 475 681 3 3 3 3 3 3 54415 3686 2813 3658 5955;5956 7801;7802;7803 7802 3 EALAEYEAR Unmodified 1050.4982 0.49818889 1542 Q00722-3;Q00722-2;Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 yes no 0 0 0 0 0 2 0 1 41.841 41.841 2 0.0056978 11682 TMT1-1 96.668 71.745 54.107 64.697 48.727 51.648 63.3 67.484 51 65 51 51 65 65 1 1 1 1 1 1 9482.7 3687 1542 3659 5957 7804 7804 1 EALAHEK Unmodified 796.40792 0.40791731 2150 Q8IY22-3;Q8IY22-2;Q8IY22 CMIP C-Maf-inducing protein yes no 0 0 0 0 0 4 0 1 28.885 28.885 3 0.019639 5894 TMT1-3 67.981 35.76 122.98 144.93 126.9 124.09 148.13 150.34 116 146 131 123 152 145 2 2 2 2 2 2 16491 3688 2150 3660 5958 7805;7806 7805 2 EALAQTVLAEVPTQLVSYFR Unmodified 2234.1947 0.19468365 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 8.5 0.5 1 1 92.651 92.651 3 2.7345E-14 30068 TMT1-7 115.74 94.509 28.586 48.406 44.142 57.957 32.976 58.755 27 48 46 56 36 56 2 3 3 3 3 3 21805 3689 2495 3661 5959;5960 7807;7808;7809;7810 7808 4 EALDHMVEYVAQNTPVTWLVGPFAPGITEK Unmodified 3311.6537 0.65365025 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 8 0 1 98.846 98.846 4 0.00033874 32279 TMT1-7 43.807 37.374 0 22.968 26.294 10.326 6.931 7.2642 0 22 26 11 7 7 0 2 2 2 1 1 2401.5 3690 231 3662 5961 7811;7812 7811 2 EALDVLGAVLK Unmodified 1126.6598 0.6597749 2300 Q92552;Q92552-2 MRPS27 28S ribosomal protein S27, mitochondrial yes no 0 0 0 0 0 7 0 1 78.897 78.897 2 0.012509 24844 TMT1-6 76.85 39.659 23.261 44.913 20.004 22.174 36.124 14.959 22 44 22 22 36 15 1 1 1 1 1 1 2740.9 3691 2300 3663 5962 7813 7813 1 EALENANTNTEVLK Unmodified 1544.7682 0.76821573 2645 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 0 3 0 1 49.451 49.451 3 6.1283E-19 15034 TMT1-2 161.21 129.32 68.717 117.57 73.074 136.61 117.7 136.29 65 116 80 131 123 131 1 1 1 1 1 1 14999 3692 2645 3664 5963 7814 7814 1 EALETSVGYAWLPLMK Unmodified 1806.9226 0.92260789 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 8 0 1 83.043 83.043 3 5.453E-06 26543 TMT1-7 70.98 46.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3693 2375 3665 5964 7815 7815 1 EALFNEFVAAAR Unmodified 1336.6776 0.67755023 107 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 0 7 0 1 70.491 70.491 2 0.00014386 21609 TMT1-6 81.709 52.791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3694 107 3666 5965 7816 7816 1 EALGDAQQSVR Unmodified 1172.5786 0.57856447 2478 Q99615-2;Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 0 2 0 1 35.754 35.754 2 0.00027368 9284 TMT1-1 81.525 44.049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3695 2478 3667 5966 7817 7817 1 EALGGQALYPHVLVK Unmodified 1593.8879 0.88787736 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 0 7 0 1 56.532 56.532 3 1.0915E-07 16101 TMT1-6 107.61 80.58 138.7 205.39 138.4 122.7 185.69 185.52 131 204 145 123 189 179 1 1 1 1 1 1 15889 3696 2540 3668 5967 7818 7818 1 EALGHWLGLLNADGWIGR Unmodified 1977.0221 0.022079431 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 9 0 1 81.382 81.382 3 6.2826E-09 24136 TMT1-8 90.385 68.33 30.769 35.759 28.11 21.705 35.376 37.367 29 36 29 22 36 36 1 1 1 1 1 1 11425 3697 1736 3669 5968 7819 7819 1 EALGIPAAASFK Unmodified 1173.6394 0.63937381 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 7 0 1 61.5 61.5 3 0.00012717 18061 TMT1-6 96.745 73.732 201 275.96 248.16 155.54 241.79 274.52 190 276 252 160 247 264 1 1 1 1 1 1 26012 3698 981 3670 5969 7820 7820 1 EALGTPGAANLYQVFIK Unmodified 1790.9567 0.95668521 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 8 0 1 75.145 75.145 3 0.025357 23448 TMT1-7 40.693 19.74 46.502 64.95 64.293 42.772 79.12 75.56 44 65 65 44 80 73 1 1 1 1 1 1 6065.7 3699 722 3671 5970 7821 7821 1 EALKEFDFLVTSEEGDNESR Unmodified 2314.0601 0.060100239 206 O43815;O43815-2 STRN Striatin yes no 0 0 0 0 1 4 0 1 70.918 70.918 3 6.4129E-07 22523 TMT1-3 87.156 73.701 30.528 58.831 49.193 51.744 56.736 45.285 29 58 51 51 58 44 1 1 1 1 1 1 6375.4 3700 206 3672 5971 7822 7822 1 EALLQASR Unmodified 886.48723 0.48723027 894 P26038 MSN Moesin yes yes 0 0 0 0 0 6 0 1 39.77 39.77 2 0.028654 10066 TMT1-5 82.75 17.438 325.55 525.98 383.85 305.09 461.41 593.39 308 521 398 308 474 569 1 1 1 1 1 1 67115 3701 894 3673 5972 7823 7823 1 EALLSSAVDHGSDEVK Unmodified 1655.8002 0.80024414 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 4 0 1 50.096 50.096 3 3.061E-16 14325 TMT1-3 138.05 108.72 200.4 359.55 278.83 301.94 264.43 302.66 190 355 291 296 276 291 1 1 1 1 1 1 47137 3702 1504 3674 5973 7824 7824 1 EALMAHGLGNR Unmodified 1167.5819 0.58187571 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 6 0 1 37.506 37.506 3 0.0045301 9198 TMT1-5 69.786 51.977 160.58 245.18 215.85 149.7 189.87 240.83 152 244 220 152 196 231 1 1 1 1 1 1 12766 3703 688 3675 5974 7825 7825 1 EALNSCNKR Unmodified 1090.5189 0.5189411 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 6 0 1 26.823 26.823 3 0.0026404 5035 TMT1-5 91.095 35.834 122.49 255.8 116.22 117.35 133.63 155.02 116 250 127 116 138 149 1 1 1 1 1 1 10797 3704 786 3676 5975 7826 7826 1 EALPAPSDDATALMTDPK Oxidation (M) 1857.8666 0.86660915 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 1 0 0 3 0 1 55.12 55.12 3 0.0019646 17280 TMT1-2 43.946 31.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3705 528 3677 5976 7827 7827 86 1 EALPAPSDDATALMTDPK Unmodified 1841.8717 0.87169453 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 4 0 1 62.586 62.586 3 8.6049E-06 19188 TMT1-3 79.311 71.123 138.57 203.94 161.95 130.35 169.01 204.11 131 203 167 131 174 196 2 2 2 2 2 2 48280 3706 528 3677 5977 7828;7829 7829 2 EALPGSGQAR Unmodified 984.49886 0.49885759 2421 Q96IU4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes yes 0 0 0 0 0 3 0 1 31.675 31.675 2 5.7131E-06 8003 TMT1-2 154.35 83.059 130.43 159.36 124.59 155.69 160.51 204.36 123 160 131 152 167 196 1 1 1 1 1 1 25492 3707 2421 3678 5978 7830 7830 1 EALPMDTEVYESPYADPEEIRPK Unmodified 2678.2422 0.2421637 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 1 3 0 1 63.131 63.131 4 2.7869E-09 20418 TMT1-2 85.737 80.018 69.228 72.58 25.365 29.384 42.593 60.613 65 73 29 29 44 58 1 1 1 1 1 1 14138 3708 1115 3679 5979 7831 7831 1 EALQDVEDENQ Unmodified 1288.5419 0.54190419 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 1.33 0.471 2 1 49.144 49.144 2;3 7.8104E-07 14603 TMT1-1 145.72 130.75 104.88 124.97 121.26 133.81 114.27 118.26 99 126 125 131 119 114 3 3 3 3 3 3 132470 3709 1422 3680 5980;5981;5982 7832;7833;7834 7834 3 EALQLWSALQLK Unmodified 1398.7871 0.78710068 2666 Q9HA64 FN3KRP Ketosamine-3-kinase yes yes 0 0 0 0 0 9 0 1 79.842 79.842 3 0.00074976 23518 TMT1-8 73.082 50.203 46.821 34.538 36.446 28.718 42.88 53.142 44 36 37 29 44 51 1 1 1 1 1 1 3485.9 3710 2666 3681 5983 7835 7835 1 EALQQQHSVQVDQLR Unmodified 1777.9071 0.90710925 3060 Q9Y6K9-2;Q9Y6K9 IKBKG NF-kappa-B essential modulator yes no 0 0 0 0 0 4 0 1 39.301 39.301 3 9.4153E-20 10040 TMT1-3 165.49 144.24 61.431 94.963 54.469 51.174 70.342 106.72 58 94 58 51 73 102 1 1 1 1 1 1 15434 3711 3060 3682 5984 7836 7836 1 EALSTATVQAAER Unmodified 1345.6838 0.68375782 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 3 0 1 42.938 42.938 2 0.013593 12497 TMT1-2 66.492 42.2 23.286 0 53.783 28.773 43.134 45.673 22 0 51 30 44 44 1 0 1 1 1 1 10127 3712 2064 3683 5985 7837 7837 1 EALTYDGALLGDR Unmodified 1392.6885 0.68850885 1822 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 0 3.5 0.5 1 1 58.563 58.563 2 1.7546E-21 18734 TMT1-2 188.96 158.79 153.4 234.76 168 145.65 208.08 142.24 145 233 175 146 210 139 3 3 3 3 3 3 57626 3713 1822 3684 5986;5987 7838;7839;7840 7839 3 EALVDTLTGILSPVQEVR Unmodified 1939.0626 0.062606842 2441 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 0 6.5 0.5 1 1 85.124 85.124 3 3.7703E-10 27289 TMT1-6 106.16 97.335 30.678 35.505 43.715 36.105 33.907 60.86 29 36 44 36 36 58 1 1 1 1 1 1 9067.9 3714 2441 3685 5988;5989 7841;7842 7842 2 EANELQQWINEK Unmodified 1500.7209 0.72087161 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 64.601 64.601 3 0.00041129 19717 TMT1-4 86.944 64.065 77.292 116.96 75.187 89.044 83.259 106.36 73 116 80 87 87 102 1 1 1 1 1 1 20035 3715 1737 3686 5990 7843 7843 1 EANHNVSAPYGR Unmodified 1313.6113 0.61126158 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 3 0 1 26.251 26.251 3 0.0015471 5828 TMT1-2 75.788 58.557 70.27 79.976 24.253 68.552 55.706 52.776 66 80 30 65 58 51 2 2 2 2 2 2 15162 3716 2079;2399 3687 5991 7844;7845 7844 2 EANLAASFGK Unmodified 1006.5084 0.50835964 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 52.596 52.596 2 6.4091E-05 14542 TMT1-6 143.96 123.63 115.86 121.71 80.902 120.01 104.1 128.15 109 123 87 116 109 123 1 1 1 1 1 1 9684.4 3717 600 3688 5992 7846 7846 1 EANNFLWPFK Unmodified 1264.6241 0.6240581 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 0 9 0 2 75.154 75.154 2;3 0.00039636 21668 TMT1-8 117.53 73.822 106.87 168.64 109.96 109.91 142.22 128.13 101 167 116 109 145 124 2 2 2 2 2 2 30400 3718 775 3689 5993;5994 7847;7848 7847 2 EANQAINPK Unmodified 983.50361 0.50360861 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 4 0 1 34.848 34.848 2 0.0072865 8299 TMT1-3 93.178 50.151 53.777 95.08 78.362 49.886 63.088 76.018 51 94 80 51 65 73 1 1 1 1 1 1 7771.1 3719 764 3690 5995 7849 7849 1 EANSIIITPGYGLCAAK Unmodified 1776.908 0.90802046 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 7 0 1 64.143 64.143 3 1.8343E-05 19085 TMT1-6 79.805 59.424 61.655 56.733 49.162 51.746 56.736 45.285 58 58 51 51 58 44 1 1 1 1 1 1 17481 3720 1702 3691 5996 7850 7850 1 EAPAPPK Unmodified 708.38064 0.38063993 1441 P62750 RPL23A 60S ribosomal protein L23a yes no 0 0 0 0 0 4 0 1 33.781 33.781 2 0.040268 7827 TMT1-3 86.086 33.403 92.504 85.157 70.184 72.43 168.85 73 87 87 73 73 167 73 1 1 1 1 1 1 7543.1 3721 1441 3692 5997 7851 7851 1 EAPAPPKAEAK Unmodified 1107.5924 0.59242362 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 1 5 0 1 34.708 34.708 3 0.008832 7961 TMT1-4 68.44 43.004 146.67 158.66 101 149.97 132.79 135.86 138 160 109 145 138 131 1 1 1 1 1 1 8703.6 3722 1441 3693 5998 7852 7852 1 EAPDLVLQR Unmodified 1039.5662 0.56620887 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3.5 0.5 1 1 47.956 47.956 2 1.2762E-08 13359 TMT1-3 168.08 114.4 344.58 486.11 464.42 369.67 375.44 512.69 326 486 473 370 392 491 3 3 3 3 3 3 122340 3723 471 3694 5999;6000 7853;7854;7855 7854 3 EAPEDIQDLMDIFGDR Unmodified 1862.8356 0.83564337 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 4 0.707 1 2 1 87.384 87.384 2;3 1.5076E-15 28864 TMT1-3 138.24 118.63 77.495 83.64 94.172 72.028 114.23 171.56 73 85 95 73 118 164 4 5 5 5 5 5 22862 3724 2753 3695 6001;6002;6003;6004 7856;7857;7858;7859;7860 7859 5 EAPEPMELDGPK Unmodified 1311.6017 0.60166768 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 3 0 1 51.497 51.497 3 0.0014219 15861 TMT1-2 76.326 53.09 46.509 73.603 55.811 51.512 48.098 83.908 44 73 58 51 51 80 1 1 1 1 1 1 7375.3 3725 1091 3696 6005 7861 7861 1 EAPIDKK Unmodified 799.44397 0.44396847 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 1 5.5 0.5 1 1 34.957 34.957 3 0.014606 8191 TMT1-5 83.265 36.839 2769.1 1961 2893.9 2082.6 2600.9 1980 2606 2064 2882 2108 2643 1927 2 2 2 2 2 2 1053200 3726 115;879 3697 6006;6007 7862;7863 7863 2 EAPVDVLTQIGR Unmodified 1296.7038 0.70376498 2549 Q9BVC6 TMEM109 Transmembrane protein 109 yes yes 0 0 0 0 0 5 0 1 63.111 63.111 2 2.187E-33 19102 TMT1-4 207.67 167.62 260.39 348.69 304.66 239.93 283.36 352.22 246 349 312 241 293 338 2 2 2 2 2 2 100450 3727 2549 3698 6008 7864;7865 7864 2 EAPVPSLHLK Unmodified 1089.6182 0.61824444 2597 Q9GZN8;Q9GZN8-2 C20orf27 UPF0687 protein C20orf27 yes no 0 0 0 0 0 8 0 1 48.27 48.27 3 0.003963 12941 TMT1-7 75.652 46.696 115.62 160.98 87.553 87.862 106.9 89.692 109 160 94 87 109 87 1 1 1 1 1 1 7671.4 3728 2597 3699 6009 7866 7866 1 EAQAAEELGVVAVGK Unmodified 1469.7726 0.77257283 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 4 0 1 60.144 60.144 3 1.7752E-10 18272 TMT1-3 97.45 73.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3729 1633 3700 6010 7867 7867 1 EAQAVPATLPELEATK Unmodified 1666.8778 0.87776618 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 60.596 60.596 3 2.2147E-05 18433 TMT1-3 84.653 63.402 161.72 263.66 188.03 166.2 272.29 255.53 153 261 196 167 276 247 2 2 2 2 2 2 29881 3730 1833 3701 6011 7868;7869 7868 2 EAQDDLVK Unmodified 916.45018 0.45017606 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 2.5 0.5 1 1 41.184 41.184 2 0.0071328 11557 TMT1-1 103.55 53.733 224.05 220.82 207.58 142.39 198.05 225.67 211 225 211 145 203 217 3 3 3 3 3 3 18046 3731 720 3702 6012;6013 7870;7871;7872 7871 3 EAQLDEEGQFLVR Unmodified 1532.7471 0.74708636 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 2 0 1 57.214 57.214 3 6.0236E-11 17732 TMT1-1 134.04 95.037 38.32 27.8 28.216 29.199 43.407 37.137 36 29 29 29 44 36 1 1 1 1 1 1 5868.1 3732 1565 3703 6014 7873 7873 1 EAQPGQSQVSYQGLPVQK Unmodified 1942.9749 0.97485447 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 5 0 1 50.532 50.532 3 6.9634E-06 14254 TMT1-4 81.723 76.721 61.546 48.873 74.254 33.431 79.293 83.017 58 51 73 36 80 80 1 1 1 1 1 1 7122.3 3733 1797 3704 6015 7874 7874 1 EAQQLVQR Unmodified 970.51959 0.51959303 881 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 0 0 3 0 1 33.105 33.105 2 0.0023436 8576 TMT1-2 81.548 26.998 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3734 881 3705 6016 7875 7875 1 EAQQYSEALASTR Unmodified 1452.6845 0.68448611 2652 Q9H4G4 GLIPR2 Golgi-associated plant pathogenesis-related protein 1 yes yes 0 0 0 0 0 3 0 1 42.87 42.87 2 5.1041E-11 12419 TMT1-2 148.13 109.38 77.129 140.25 82.755 57.815 92.522 122.08 73 138 87 59 95 117 2 2 2 2 2 2 24215 3735 2652 3706 6017 7876;7877 7876 2 EAQTLQQYR Unmodified 1135.5622 0.56218613 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 3 0 1 36.053 36.053 2 0.00010308 9739 TMT1-2 150.53 108.96 153.48 187.48 195.41 104.14 178.09 187.86 145 189 196 109 181 181 1 1 1 1 1 1 29069 3736 1093;1253 3707 6018 7878 7878 1 EAQVYQAFK Unmodified 1082.5397 0.53965977 2419 Q96I99;Q96I99-2 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 6 0 1 50.883 50.883 2 0.00014586 14497 TMT1-5 148.52 93.8 99.829 115.42 75.862 73.393 99.684 105.89 94 116 80 73 102 102 1 1 1 1 1 1 13824 3737 2419 3708 6019 7879 7879 1 EASADLSPYVR Unmodified 1206.5881 0.58806652 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 3 0 1 46.868 46.868 2 1.8435E-05 14002 TMT1-2 120.76 92.365 68.427 116.76 122.57 71.025 77.565 83.067 65 116 123 73 80 80 1 1 1 1 1 1 19457 3738 51 3709 6020 7880 7880 1 EASAVLFTITK Unmodified 1178.6547 0.65468953 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 7.5 0.5 1 1 66.293 66.293 2 1.6066E-05 19978 TMT1-6 94.465 66.723 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3739 1256 3710 6021;6022 7881;7882 7881 2 EASDPQPEEADGGLK Unmodified 1541.6845 0.68454569 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 2 0 1 42.627 42.627 3 8.7709E-12 11945 TMT1-1 128.95 106.9 408.24 496.78 396.5 318.11 368.29 424.42 385 499 409 319 380 408 2 2 2 2 2 2 95903 3740 1277 3711 6023 7883;7884 7883 2 EASFDGISK Unmodified 952.45018 0.45017606 674 P12955;P12955-3;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 0 5 0 1 48.516 48.516 2 0.0030224 13394 TMT1-4 102.55 88.954 114.91 174.1 196.4 104.22 170.68 190.21 109 174 196 109 174 183 1 1 1 1 1 1 15941 3741 674 3712 6024 7885 7885 1 EASIDILHSIVK Unmodified 1323.7398 0.73981614 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 6 0 1 63.139 63.139 3 0.0001922 19309 TMT1-5 92.19 61.872 99.579 99.621 131.12 92.926 106.41 97.168 94 102 131 94 109 94 1 1 1 1 1 1 11754 3742 54 3713 6025 7886 7886 1 EASMVITESPAALQLR Unmodified 1714.8924 0.89237039 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 0 4.5 0.5 1 1 62.906 62.906 3 1.4109E-23 19094 TMT1-4 171.26 152.18 177.44 163.1 156.67 129.61 166.91 266 167 167 160 130 174 254 2 2 2 2 2 2 121270 3743 906 3714 6026;6027 7887;7888;7889 7889 3 EASNMGWLTFTFSLQK Unmodified 1858.8924 0.89237039 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 9 0 1 84.311 84.311 3 0.0054584 25205 TMT1-8 48.053 25.618 38.058 74.56 32.65 36.745 34.941 29.917 36 73 36 36 36 29 1 1 1 1 1 1 3646.1 3744 1666 3715 6028 7890 7890 1 EASPNPEDGIVR Unmodified 1282.6153 0.61534391 123 O15031 PLXNB2 Plexin-B2 yes yes 0 0 0 0 0 2 0 1 40.109 40.109 2 0.010526 11041 TMT1-1 73.666 32.679 15.715 21.585 45.643 13.263 21.875 15.366 15 22 44 15 22 15 1 1 1 1 1 1 3266.8 3745 123 3716 6029 7891 7891 1 EASSTQDTGKLPVK Unmodified 1459.7518 0.75183739 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 1 6 0 1 40.392 40.392 3 1.4628E-07 10336 TMT1-5 113.37 106.05 138.32 219.42 191.48 151.08 193.86 214.06 131 218 196 152 199 206 1 1 1 1 1 1 17494 3746 1083 3717 6030 7892 7892 1 EATADDLIK Unmodified 974.49204 0.49204087 1888 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 0 3 0 1 48.439 48.439 2 0.000953 14625 TMT1-2 126.41 41.348 138.6 188.91 169.75 145.59 147.65 135.43 131 189 174 145 152 131 1 1 1 1 1 1 16883 3747 1888 3718 6031 7893 7893 1 EATDAIGHLDR Unmodified 1196.5786 0.57856447 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 2.5 0.5 1 1 38.257 38.257 3 0.00027066 10276 TMT1-1 98.407 69.68 93.055 138.68 112.54 93.788 119.41 143.7 88 138 116 94 123 138 2 2 2 2 2 2 46126 3748 1655 3719 6032;6033 7894;7895 7894 2 EATDPRPCEVENAVESWR Unmodified 2143.9593 0.95928076 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 1 2.5 0.5 1 1 54.567 54.567 3 1.7758E-07 17072 TMT1-2 93.342 75.046 154.57 226.32 159.09 162.6 207.07 179.58 146 225 167 161 211 174 3 3 3 3 3 3 73612 3749 1143 3720 6034;6035 7896;7897;7898 7898 3 EATNPPVIQEEKPK Unmodified 1578.8253 0.82533668 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 4.5 0.5 2 2 42.021 42.021 3;4 3.759E-18 11081 TMT1-3 154.6 126.63 1707.6 2421.6 2026.6 1524 2219.8 2280.8 1614 2416 2078 1543 2264 2199 6 6 6 6 6 6 406470 3750 955 3721 6036;6037;6038;6039 7899;7900;7901;7902;7903;7904 7900 6 EATPYVK Unmodified 806.41742 0.41741937 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 0 0 0 0 4 0 1 39.083 39.083 2 0.0059956 9958 TMT1-3 80.18 36.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3751 1740 3722 6040 7905 7905 1 EATQILSVPK Unmodified 1084.6128 0.61282471 1089 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 0 6 0 1 53.379 53.379 2 0.011941 15611 TMT1-5 81.475 49.344 46.549 73.715 48.969 34.915 80.544 44.606 44 73 51 36 80 44 1 1 1 1 1 1 10884 3752 1089 3723 6041 7906 7906 1 EATSTFTNITYR Unmodified 1402.6729 0.67285879 484 P05106 ITGB3 Integrin beta-3 yes yes 0 0 0 0 0 5 0 1 49.059 49.059 2 4.389E-56 13603 TMT1-4 240.37 200.45 202.08 214.21 119.1 196.97 133.31 484.42 190 216 131 189 152 458 1 1 1 1 1 1 116240 3753 484 3724 6042 7907 7907 1 EATTEFSVDAR Unmodified 1224.5622 0.5622457 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.75 1.48 1 1 1 1 43.449 43.449 2 1.0205E-53 12463 TMT1-1 232.72 163.09 3552.1 4423.3 3924.6 2890.5 3453.4 4768.8 3353 4444 4008 2918 3585 4566 12 12 12 12 12 12 1004000 3754 831 3725 6043;6044;6045;6046 7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919 7910 12 EATTLANGVLASLNLPAAIEDVSGDTVPQSILTK Unmodified 3407.8035 0.80354519 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 7 0 1 98.691 98.691 4 0.0035978 32037 TMT1-6 38.512 36.808 15.887 14.511 22.578 6.1832 6.4952 15.805 15 15 22 7 7 15 1 1 1 1 1 1 2121.1 3755 2267 3726 6047 7920 7920 1 EATTNAPFR Unmodified 1005.488 0.48795855 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 4.5 0.5 1 1 35.099 35.099 2 1.6003E-13 8345 TMT1-3 184.04 110.06 408.85 697.41 485.6 452.42 383.56 713.94 387 689 508 447 410 680 3 3 3 3 3 3 116170 3756 967 3727 6048;6049 7921;7922;7923 7921 3 EATVKPFAIDIFPVTNK Unmodified 1889.0299 0.02985015 2199 Q8NBJ7;Q8NBJ7-3;Q8NBJ7-5;Q8NBJ7-4 SUMF2 Sulfatase-modifying factor 2 yes no 0 0 0 0 1 8 0 1 70.869 70.869 3 2.355E-05 21826 TMT1-7 83.253 58.459 37.707 88.695 79.579 32.98 86.387 90.277 36 87 80 36 87 87 1 1 1 1 1 1 6975.5 3757 2199 3728 6050 7924 7924 1 EATWVVDVK Unmodified 1045.5444 0.5444108 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 0 5 0 1 58.008 58.008 2 0.00029115 17130 TMT1-4 141.88 78.313 177 257.95 149.2 169.44 223 254.81 167 256 160 167 229 245 1 1 1 1 1 1 22585 3758 844 3729 6051 7925 7925 1 EAVAICK Unmodified 789.40547 0.40547447 501 P05771-2;P05771;P05129 PRKCB;PRKCG Protein kinase C beta type;Protein kinase C gamma type yes no 0 0 0 0 0 5 0 1 41.749 41.749 2 8.3124E-05 10742 TMT1-4 122.78 54.354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3759 501 3730 6052 7926 7926 1 EAVAMESYAK Unmodified 1097.5063 0.50631073 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 4 0 1 46.594 46.594 2 0.00015135 12928 TMT1-3 133.99 97.547 115.35 168.84 127.62 76.596 172.17 183.77 109 168 131 80 174 177 1 1 1 1 1 1 15384 3760 1504 3731 6053 7927 7927 1 EAVCEVALDYK Unmodified 1295.6068 0.60675306 1546 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 0 4 0 1 56.228 56.228 2 1.2725E-05 16723 TMT1-3 123.96 111.95 53.915 95.464 54.852 42.758 109.78 66.157 51 94 58 44 109 65 1 1 1 1 1 1 13476 3761 1546 3732 6054 7928 7928 1 EAVCIVLSDDTCSDEK Unmodified 1839.7866 0.78664427 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2 0 1 59.369 59.369 3 1.4837E-08 18810 TMT1-1 106.36 82.081 54.384 34.168 28.074 21.994 20.154 53.791 51 36 29 22 22 51 1 1 1 1 1 1 18260 3762 1311 3733 6055 7929 7929 1 EAVDSALR Unmodified 859.43995 0.43994572 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 2 0 1 37.134 37.134 2 0.032157 9810 TMT1-1 80.229 15.426 77.75 48.076 56.531 66.198 78.593 59.585 73 51 58 65 80 58 1 1 1 1 1 1 10667 3763 651 3734 6056 7930 7930 1 EAVEAQIR Unmodified 914.48214 0.48214489 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 2 0 1 35.545 35.545 2 0.0047266 9200 TMT1-1 75.825 10.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3764 1229 3735 6057 7931 7931 1 EAVEHLQK Unmodified 952.49779 0.49779495 511 P06727 APOA4 Apolipoprotein A-IV yes yes 0 0 0 0 0 4 0 1 34.15 34.15 3 0.0015005 7998 TMT1-3 69.954 45.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3765 511 3736 6058 7932 7932 1 EAVEKEFEPLLNWMK Unmodified 1861.9284 0.92842155 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 6.5 0.5 1 1 77.512 77.512 4 4.4626E-08 24310 TMT1-6 113.76 96.056 122.61 214.04 131.67 93.89 111.53 159.92 116 211 138 95 116 153 2 2 2 2 2 2 20670 3766 708 3737 6059;6060 7933;7934 7934 2 EAVELPLTHFELYK Unmodified 1687.8821 0.88212328 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 6 0 1 68.173 68.173 3 5.576E-19 21305 TMT1-5 161.76 134.73 161.71 249.59 202.26 205.86 210.8 226.37 153 248 210 203 218 218 2 2 2 2 2 2 25182 3767 1118 3738 6061 7935;7936 7935 2 EAVFPFQPGSVAEVCITFDQANLTVK Unmodified 2866.4211 0.42113112 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 7 0 2 86.722 86.722 3;4 8.647E-08 27848 TMT1-6 68.192 49.473 207.33 334.57 217.18 236.97 253.03 264.61 196 331 230 233 261 255 6 6 6 6 6 6 31031 3768 586 3739 6062;6063 7937;7938;7939;7940;7941;7942 7939 6 EAVGAFVVFDISR Unmodified 1408.7351 0.73506511 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 7 0 1 74.414 74.414 2 0.013944 23173 TMT1-6 66.393 60.289 23.15 59.716 26.031 36.987 43.049 37.148 22 58 29 36 44 36 1 1 1 1 1 1 5531.5 3769 1734 3740 6064 7943 7943 1 EAVGDLLDAFK Unmodified 1176.6027 0.60265396 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 6 0 1 76.025 76.025 2 0.01252 24371 TMT1-5 76.843 60.59 37.922 74.182 55.819 51.516 47.841 91.377 36 73 58 51 51 87 1 1 1 1 1 1 7284.9 3770 1584 3741 6065 7944 7944 1 EAVIAQISSHVK Unmodified 1280.7089 0.70885036 101 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 0 8 0.816 1 1 1 52.26 52.26 3 6.5127E-09 14375 TMT1-6 135.94 103.88 470.16 495.96 450.32 367.1 556.96 621.57 443 503 461 370 569 598 3 3 3 3 3 3 51814 3771 101 3742 6066;6067;6068 7945;7946;7947 7945 3 EAVLDVIPTDIHQR Unmodified 1604.8522 0.85222014 589 P09467 FBP1 Fructose-1,6-bisphosphatase 1 yes yes 0 0 0 0 0 4 0 1 56.263 56.263 3 1.8478E-10 16707 TMT1-3 123.02 80.978 46.524 88.755 40.451 35.861 57.21 52.734 44 87 44 36 58 51 1 1 1 1 1 1 26315 3772 589 3743 6069 7948 7948 1 EAVLIDPVLETAPR Unmodified 1521.8403 0.84025847 361 O95571 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial yes yes 0 0 0 0 0 4 0 1 66.008 66.008 3 0.034816 20533 TMT1-3 43.177 26.108 30.373 82.146 55.372 51.671 41.018 76.648 29 80 58 51 44 73 1 1 1 1 1 1 24160 3773 361 3744 6070 7949 7949 1 EAVLIQAGEYMGQLLEQASLHFFVTAR Unmodified 3020.543 0.54297759 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 9 0 1 109.15 109.15 4 2.5853E-19 33874 TMT1-8 95.366 74.927 16.875 32.547 21.705 25.659 19.782 29.284 16 32 23 25 21 28 3 3 3 3 3 3 4043.6 3774 393 3745 6071 7950;7951;7952 7951 3 EAVLLLK Unmodified 784.50584 0.50584045 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 7 0 1 59.64 59.64 2 0.0013483 17333 TMT1-6 108.24 36.004 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3775 1041 3746 6072 7953 7953 1 EAVPEPVLLSR Unmodified 1208.6765 0.6764876 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 4 0 1 55.069 55.069 2 2.1678E-06 16324 TMT1-3 133.76 89.331 68.315 124 135.26 140.72 108.86 174.92 65 123 138 138 116 167 1 1 1 1 1 1 40185 3776 415 3747 6073 7954 7954 1 EAVQCVQELASPSLLFIFVR Unmodified 2305.214 0.21403888 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 9 0 1 93.433 93.433 3 0.00059947 28668 TMT1-8 54.582 37.093 15.939 14.654 13.858 31.716 13.184 30.538 15 15 15 30 15 29 1 1 1 1 1 1 3831.4 3777 1584 3748 6074 7955 7955 1 EAVTFLR Unmodified 834.45995 0.45995289 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 5 0 1 48.76 48.76 2 0.02412 13487 TMT1-4 94.401 31.114 99.556 145.96 95.829 118.42 141.06 150.54 94 145 102 116 145 145 1 1 1 1 1 1 14866 3778 1046 3749 6075 7956 7956 1 EAVTHIGR Unmodified 881.47191 0.47191456 513 P06730;P06730-3;P06730-2 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 0 4 0 1 27.582 27.582 3 0.0062526 5478 TMT1-3 80.165 38.056 61.18 110.45 83.602 80.726 92.033 75.192 58 109 87 80 94 73 2 2 2 2 2 2 9553.1 3779 513 3750 6076 7957;7958 7958 2 EAVVNTQELLDLLVK Unmodified 1682.9455 0.94545182 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 7 0 1 89.093 89.093 3 0.0023265 28747 TMT1-6 47.506 19.537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3780 2028 3751 6077 7959 7959 1 EAWFSPVHTYPLLATR Unmodified 1886.9679 0.9679186 1740 Q13884 SNTB1 Beta-1-syntrophin yes yes 0 0 0 0 0 9 0 1 65.472 65.472 3 0.0021597 17885 TMT1-8 55.546 35.784 61.441 94.992 52.709 90.641 69.59 75.832 58 94 58 87 73 73 1 1 1 1 1 1 7125.3 3781 1740 3752 6078 7960 7960 1 EAWIHAK Unmodified 853.44464 0.44463717 1815 Q15027 ACAP1 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 39.975 39.975 3 0.036164 10159 TMT1-5 55.717 22.596 92.166 146.82 74.758 56.773 115.11 105.45 87 145 80 58 116 102 1 1 1 1 1 1 5453.1 3782 1815 3753 6079 7961 7961 1 EAWPHIK Unmodified 879.46029 0.46028724 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 6.5 0.5 1 1 44.402 44.402 3 0.0046756 11849 TMT1-5 94.407 70.85 961.75 1566.3 1140.6 1007.7 1097.4 1542.1 910 1551 1187 1003 1144 1476 4 4 4 4 4 4 73348 3783 1260 3754 6080;6081 7962;7963;7964;7965 7963 4 EAYEAGLIGK Unmodified 1049.5393 0.53932542 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 4 0 1 52.389 52.389 2 0.00070448 15214 TMT1-3 109.29 76.45 84.844 116.56 68.642 65.628 70.484 83.269 80 116 73 65 73 80 1 1 1 1 1 1 7452.8 3784 1206 3755 6082 7966 7966 1 EAYGAVTQTVR Unmodified 1193.6041 0.60405094 1832 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 0 4 0 1 39.394 39.394 2 1.8673E-05 10094 TMT1-3 120.63 76.514 77.323 109.49 76.365 72.648 137.7 96.275 73 109 80 73 138 94 1 1 1 1 1 1 10448 3785 1832 3756 6083 7967 7967 1 EAYPDGSSK Unmodified 952.41379 0.41379055 1923 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 0 0 0 0 0 3 0 1 34.55 34.55 2 0.0061811 9150 TMT1-2 65.535 44.029 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3786 1923 3757 6084 7968 7968 1 EAYPEEAYIADLDAK Unmodified 1696.7832 0.7831971 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 2.5 0.5 1 1 66.295 66.295 3 6.1042E-08 21569 TMT1-2 111.74 60.045 192.94 231.59 198.07 150.68 252.07 225.19 182 233 203 153 255 218 4 4 4 4 4 4 40685 3787 1283 3758 6085;6086 7969;7970;7971;7972 7971 4 EAYPGDVFYLHSR Unmodified 1552.731 0.73104237 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 5.33 1.25 1 1 1 51.908 51.908 3 1.3936E-16 14787 TMT1-4 169.46 141.18 561.36 714.57 626.07 562.01 561.9 704.58 530 717 644 558 585 676 4 4 4 4 4 4 221560 3788 888 3759 6087;6088;6089 7973;7974;7975;7976 7975 4 EAYVPSK Unmodified 792.40177 0.4017693 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 5 0 1 40.424 40.424 2 0.025669 10196 TMT1-4 93.195 37.691 185.34 352.93 289.74 237.58 223.13 433.89 176 348 298 237 238 413 1 1 1 1 1 1 31217 3789 2512 3760 6090 7977 7977 1 ECADLWPR Unmodified 1045.4651 0.46511462 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 4 0 1 49.797 49.797 2 0.027873 14272 TMT1-3 83.313 54.586 123.09 120.41 129.37 101.66 112.27 127.91 116 123 131 102 116 123 1 1 1 1 1 1 18931 3790 1446 3761 6091 7978 7978 1 ECANGYLELLDHVLLTLQK Unmodified 2228.1511 0.15110427 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 8 0 1 92.416 92.416 4 2.9141E-05 29941 TMT1-7 71.376 56.448 15.866 29.563 13.364 22.723 28 37.577 15 29 15 22 29 36 1 1 1 1 1 1 2653.9 3791 3010 3762 6092 7979 7979 1 ECANGYLELLDHVLLTLQKPSPELK Unmodified 2879.5103 0.51028048 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8.5 0.5 2 2 87.499 87.499 4;5 2.9424E-65 26452 TMT1-8 181.38 153.2 835.48 873.72 947.8 842.57 955.22 1029.1 788 889 963 839 984 991 8 8 8 8 8 8 124090 3792 3010 3763 6093;6094;6095;6096 7980;7981;7982;7983;7984;7985;7986;7987 7985 8 ECAVTEK Unmodified 835.37457 0.37456828 1648 Q12841 FSTL1 Follistatin-related protein 1 yes yes 0 0 0 0 0 3 0 1 33.43 33.43 2 0.0034184 8706 TMT1-2 86.833 43.806 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3793 1648 3764 6097 7988 7988 1 ECCEKPLLEK Unmodified 1304.6105 0.61045823 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 1 5 0 1 43.946 43.946 3 0.0040404 11597 TMT1-4 81.92 39.351 257.37 589.61 607.4 285.07 584.63 565.35 246 580 607 304 590 546 1 1 1 1 1 1 46783 + 3794 28 3765 6098 7989 7989 1 ECDNALR Unmodified 876.37597 0.37596526 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 2 0 1 27.412 27.412 2 0.011916 6008 TMT1-1 103.91 76.653 552.46 711.04 681.92 552.81 816.19 804.99 522 714 695 557 831 777 1 1 1 1 1 1 112560 3795 3010;3014 3766 6099 7990 7990 1 ECDNALRELETVR Unmodified 1603.7624 0.76241885 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 2 0 1 50.176 50.176 3 0.0025648 15030 TMT1-1 73.305 44.293 208.33 222.95 143.76 140.92 71.822 369.98 196 225 152 138 87 349 2 2 2 2 2 2 36502 3796 3010 3767 6100 7991;7992 7992 2 ECEEIIR Unmodified 947.43823 0.43823117 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 0 2.5 0.5 1 1 37.027 37.027 2 6.935E-05 9817 TMT1-1 157.99 119.18 2083.9 2717.2 2364.8 2042 2547.7 3158.3 1968 2723 2430 2041 2629 3031 3 3 3 3 3 3 522010 3797 438 3768 6101;6102 7993;7994;7995 7993 3 ECEEIIRK Unmodified 1075.5332 0.53319418 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 4 0 1 37.322 37.322 2 0.0072393 9263 TMT1-3 73.208 31.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3798 438 3769 6103 7996 7996 1 ECELYVQK Unmodified 1067.4957 0.49574604 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 4 0 1 45.926 45.926 3 0.0021588 12624 TMT1-3 98.299 60.824 138.74 189.3 146.21 139.19 155.81 150.12 131 189 152 138 160 145 1 1 1 1 1 1 44902 3799 635 3770 6104 7997 7997 1 ECFGACLFTCYDLLRPDVVLETAWR Unmodified 3090.4402 0.44016878 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 8 0 1 90.423 90.423 4 4.2381E-05 29197 TMT1-7 57.61 44.203 15.829 38.092 12.49 30.867 4.554 39.312 15 37 15 29 7 37 1 1 1 1 1 1 3825.9 3800 1540 3771 6105 7998 7998 1 ECGVGVIVTPEQIEEAVEAAINR Unmodified 2482.2374 0.2373531 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 5 0 1 95.386 95.386 3 3.2091E-06 31614 TMT1-4 68.42 59.014 0 15 0 0 0 0 0 15 0 0 0 0 0 1 0 0 0 0 1540.2 3801 1146 3772 6106 7999 7999 1 ECHLNADTVSSK Unmodified 1359.6089 0.60887832 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 4 0 1 34.39 34.39 3 2.2668E-08 8064 TMT1-3 128.41 107.99 91.687 192.97 116.17 109.53 142.53 119.59 87 189 123 109 145 116 1 1 1 1 1 1 20522 3802 1467 3773 6107 8000 8000 1 ECIESGPGCTWCQK Unmodified 1710.68 0.68001113 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 5 0 1 48.639 48.639 3 0.00014252 13472 TMT1-4 82.515 72.985 178.35 345.17 209.31 232.82 265.96 350.59 169 339 223 229 276 336 1 1 1 1 1 1 20670 3803 485 3774 6108 8001 8001 1 ECINFASFNFLGLLDNPR Unmodified 2126.0255 0.025509829 139 O15269;O15269-2 SPTLC1 Serine palmitoyltransferase 1 yes no 0 0 0 0 0 9 0 1 92.015 92.015 3 3.834E-05 28144 TMT1-8 66.606 52.734 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3804 139 3775 6109 8002 8002 1 ECLCGALASYAAACAGR Unmodified 1799.7753 0.7753085 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7 0 1 61.594 61.594 3 1.1405E-05 18071 TMT1-6 84.41 79.695 46.368 73.212 79.735 49.365 86.439 66.823 44 73 80 51 87 65 1 1 1 1 1 1 23143 3805 471 3776 6110 8003 8003 1 ECPAIDYTR Unmodified 1123.4968 0.49680868 2988 Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3 MOB4 MOB-like protein phocein yes no 0 0 0 0 0 3 0 1 40.443 40.443 2 0.0017644 11480 TMT1-2 113.66 92.686 99.33 192.83 94.042 95.459 89.231 137.1 94 189 102 94 94 131 1 1 1 1 1 1 20987 3806 2988 3777 6111 8004 8004 1 ECPFVIKPK Unmodified 1116.6002 0.60015154 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 1 8 0 1 49.098 49.098 3 0.023481 13340 TMT1-7 63.397 19.209 191.05 339.48 244.15 209.89 270.64 244.92 181 335 254 210 276 237 1 1 1 1 1 1 35328 3807 2100 3778 6112 8005 8005 1 ECPGIEPVCVDLGDWEATER Unmodified 2331.0147 0.014746726 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 3 0 1 71.383 71.383 3 1.4223E-05 23627 TMT1-2 74.698 67.422 62.76 49.192 50.28 36.675 40.917 69.188 59 51 51 37 43 66 2 2 2 2 2 2 8017.2 3808 2098 3779 6113 8006;8007 8006 2 ECPSDECGAGVFMASHFDR Unmodified 2170.8507 0.85065829 1463 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 0 0 0 4 0 1 52.257 52.257 3 1.45E-06 15188 TMT1-3 80.362 71.108 54.307 42.589 33.777 52.658 56.987 36.75 51 44 36 51 58 36 1 1 1 1 1 1 14959 3809 1463 3780 6114 8008 8008 1 ECQPPFAFR Unmodified 1150.523 0.52296385 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 6 0 1 50.48 50.48 2 0.014496 14362 TMT1-5 82.75 60.01 76.847 131.91 137.24 84.627 121.45 96.738 73 131 138 87 123 94 1 1 1 1 1 1 14635 3810 485 3781 6115 8009 8009 1 EDAANNYAR Unmodified 1022.4417 0.44173664 1491;2068;1492;2510;622;2783;14 P0DPH8;P0DPH7;P0DPH7-2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2;A6NHL2-2;A6NHL2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3 no no 0 0 0 0 0 2.33 0.471 2 1 28.051 28.051 2;3 0.00028522 6472 TMT1-2 142.04 97.276 309.14 352.25 404.13 401.45 387.88 443.05 292 357 411 396 403 426 3 3 3 3 3 3 290180 3811 622;1491;2068;2510;1492;2783;14 3782 6116;6117;6118 8010;8011;8012 8012 3 EDAGLEGDFR Unmodified 1107.4833 0.4832671 605 P09769 FGR Tyrosine-protein kinase Fgr yes yes 0 0 0 0 0 2 0 1 46.35 46.35 2 0.0013739 13478 TMT1-1 74.464 40.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3812 605 3783 6119 8013 8013 1 EDAQVAAEILEIADTPSGDK Unmodified 2070.9957 0.99570907 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 3.2 0.748 1 2 2 80.333 80.333 3;4 1.2672E-32 27059 TMT1-2 154.56 142.25 222.89 373.48 309.06 199.46 413.06 345.51 211 370 313 204 415 334 7 8 7 6 8 7 68974 3813 555 3784 6120;6121;6122;6123;6124 8014;8015;8016;8017;8018;8019;8020;8021 8019 8 EDAQVAAEILEIADTPSGDKTSLETR Unmodified 2758.3509 0.35086253 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 3.33 0.471 2 1 75.359 75.359 3;4 1.866E-16 25161 TMT1-2 101.59 100.17 176.23 354.56 228.88 244.65 213.92 296.64 167 348 239 240 225 284 4 5 4 5 5 5 73445 3814 555 3785 6125;6126;6127 8022;8023;8024;8025;8026 8022 5 EDAVLEYLK Unmodified 1078.5546 0.55464113 894 P26038 MSN Moesin yes yes 0 0 0 0 0 4.5 0.5 1 1 66.304 66.304 2;3 0.00016745 20404 TMT1-4 147.51 120.91 555.21 722.63 932.24 601.22 935.83 758.94 526 729 929 617 946 737 4 4 4 4 4 4 104780 3815 894 3786 6128;6129 8027;8028;8029;8030 8029 4 EDAVLYLLEIPK Unmodified 1401.7755 0.77553294 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 6 0 1 85.44 85.44 3 0.00051983 28107 TMT1-5 84.479 51.981 92.374 92.35 85.99 72.271 69.115 114.22 87 94 88 72 73 109 2 2 2 2 2 2 16359 3816 2852 3787 6130 8031;8032 8032 2 EDAVNWLSGLK Unmodified 1230.6245 0.62445203 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 7 0 1 72.112 72.112 3 0.016339 22248 TMT1-6 55.452 27.971 23.144 52.145 33.373 52.397 72.155 52.307 22 51 36 51 73 51 1 1 1 1 1 1 5005.2 3817 750 3788 6131 8033 8033 1 EDDKPETVIK Unmodified 1172.5925 0.5924832 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 1 4 0 1 41.535 41.535 3 0.00021762 10917 TMT1-3 111.63 64.342 151.85 378.32 306.5 268.22 342.47 268.45 145 370 316 268 348 261 1 1 1 1 1 1 24216 3818 2881 3789 6132 8034 8034 1 EDDLNSFNATDLK Unmodified 1480.6682 0.66816734 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 3 0.816 1 1 1 59.865 59.865 2;3 2.9316E-27 18050 TMT1-3 160.56 145.87 107.83 129.42 161.11 83.051 129.6 105.03 102 131 160 87 131 102 2 2 2 2 2 2 18952 3819 608 3790 6133;6134;6135 8035;8036;8037 8037 3 EDEIPETVSLEMLDAAK Unmodified 1888.8976 0.89757493 2357 Q96A26 FAM162A Protein FAM162A yes yes 0 0 0 0 0 3 0 1 76.894 76.894 3 0.0013895 25747 TMT1-2 45.221 28.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3820 2357 3791 6136 8038 8038 1 EDFATFDYILCMDESNLR Unmodified 2237.9609 0.96092024 877 P24666;P24666-3;P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 4 0 1 85.896 85.896 3 7.0509E-06 28283 TMT1-3 81.594 73.756 16.063 6.3649 0 32.685 5.5698 7.3031 15 7 0 30 7 7 1 1 0 1 1 1 4186.2 3821 877 3792 6137 8039 8039 1 EDFLNPDVLDIFISSVQK Unmodified 2078.0572 0.057187113 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 7.5 0.5 1 1 99.042 99.042 3 7.9741E-06 32290 TMT1-6 80.238 61.405 55.326 43.585 42.068 59.408 78.612 68.113 52 44 44 58 80 66 3 2 3 3 3 3 16101 3822 2951 3793 6138;6139 8040;8041;8042 8040 3 EDFTLLDFINAVK Unmodified 1523.7872 0.78716026 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 7.5 0.5 1 1 93.222 93.222 3 5.4928E-05 30218 TMT1-6 98.156 66.971 39.007 50.399 73.861 42.758 49.541 53.59 37 51 73 44 51 51 2 2 2 2 2 1 7513.7 3823 2 3794 6140;6141 8043;8044 8043 2 EDGAISTIVLR Unmodified 1172.6401 0.6401021 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 4 0 1 55.888 55.888 2 0.0010094 16585 TMT1-3 100.48 63.907 122.56 142.68 199.75 119.19 177.65 180.41 116 145 198 123 181 174 1 1 1 1 1 1 24975 3824 1232 3795 6142 8045 8045 1 EDGGGWWYNR Unmodified 1238.5105 0.51048491 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 0 5.5 0.5 1 1 53.021 53.021 2 3.8467E-05 15288 TMT1-4 148.52 112.56 934.07 1202.6 1051.3 955.24 1145.6 1518.3 882 1206 1082 951 1187 1455 3 3 3 3 3 3 287760 3825 438 3796 6143;6144 8046;8047;8048 8047 3 EDGLAQQQTQLNLR Unmodified 1612.8169 0.81689726 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 3.5 0.5 1 1 47.3 47.3 3 2.958E-05 14254 TMT1-2 91.307 70.354 77.327 109.5 75.629 89.15 76.218 98.029 73 109 80 87 80 94 2 2 2 2 2 2 21183 3826 1176 3797 6145;6146 8049;8050 8049 2 EDGPGIPADIK Unmodified 1110.5557 0.55570376 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 3 0 1 50.879 50.879 2 0.0036824 15616 TMT1-2 89.679 46.652 70.053 86.926 54.91 51.117 71.957 59.775 66 87 58 51 73 58 1 1 1 1 1 1 4936.6 3827 2444 3798 6147 8051 8051 1 EDGSLEIGDTTTFSR Unmodified 1626.7373 0.73730954 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 2.5 0.5 1 1 54.703 54.703 2 1.3381E-16 16811 TMT1-1 146.67 119.26 62.506 95.974 53.323 75.427 62.96 76.021 59 95 58 73 66 73 2 2 2 2 2 2 19211 3828 1081 3799 6148;6149 8052;8053 8052 2 EDGTFYEFGEDIPEAPER Unmodified 2099.896 0.89599502 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2 0 1 66.841 66.841 3 0.00018359 21435 TMT1-1 69.081 59.024 15.785 36.891 20.848 14.88 14.471 15.577 15 36 22 15 15 15 1 1 1 1 1 1 3571.8 3829 203 3800 6150 8054 8054 1 EDGVTPYMIFFK Unmodified 1445.6901 0.69008876 687 P13693;P13693-2 TPT1 Translationally-controlled tumor protein yes no 0 0 0 0 0 7 0 1 80.222 80.222 3 7.2775E-05 25397 TMT1-6 100.55 68.056 54.006 56.86 72.388 65.414 69.98 98.207 51 58 73 65 73 94 1 1 1 1 1 1 8129.7 3830 687 3801 6151 8055 8055 1 EDIALNYR Unmodified 992.49271 0.49270958 1826 Q15080 NCF4 Neutrophil cytosol factor 4 yes yes 0 0 0 0 0 3 0 1 46.244 46.244 2 0.0042075 13781 TMT1-2 77.072 41.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3831 1826 3802 6152 8056 8056 1 EDITQSAQHALR Unmodified 1367.6793 0.67934115 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 4.33 1.25 1 1 1 38.885 38.885 3 2.7545E-14 9847 TMT1-3 174.72 152.63 360.6 542 429.48 348.19 407.78 482.99 341 539 443 349 421 464 4 4 4 4 4 4 69528 3832 1655 3803 6153;6154;6155 8057;8058;8059;8060 8059 4 EDIYAVEIVGGATR Unmodified 1491.7569 0.75692277 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 3 0 1 62.683 62.683 2 0.00016667 20218 TMT1-2 91.093 51.384 46.669 103.28 62.026 66.314 55.003 76.248 44 101 66 65 58 73 1 2 2 2 2 2 10138 3833 1009 3804 6156 8061;8062 8061 2 EDIYSGGGGGGSR Unmodified 1210.5214 0.52144352 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 0 2 0 1 33.992 33.992 2 0.0010915 8585 TMT1-1 87.777 57.207 38.116 50.979 42.766 35.728 56.959 60.203 36 51 44 36 58 58 1 1 1 1 1 1 4541.8 3834 1675 3805 6157 8063 8063 1 EDKHECPFGR Unmodified 1273.551 0.55096951 2301 Q92556;Q92556-3 ELMO1 Engulfment and cell motility protein 1 no no 0 0 0 0 1 4 0 1 30.317 30.317 4 0.0026009 6498 TMT1-3 82.417 48.531 68.549 140.84 81.724 81.139 76.037 114.02 65 138 87 80 80 109 1 1 1 1 1 1 7764.1 3835 2301 3806 6158 8064 8064 1 EDKLECSEELGDLVK Unmodified 1762.8295 0.82949536 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 4 0 1 59.462 59.462 3 2.0142E-05 17996 TMT1-3 92.773 65.276 153.47 212.28 175.58 151.57 218.05 179.26 145 212 181 152 221 174 1 1 1 1 1 1 25219 3836 1540 3807 6159 8065 8065 1 EDKYEEEIK Unmodified 1181.5452 0.54519866 519;520;521;1486;1487;518;551;552 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 2.4 1.02 1 2 1 1 42.309 42.309 3;4 0.00061327 12045 TMT1-1 113.63 61.703 4613.2 7558.9 7410 5122.6 8379.9 6386.1 4376 7513 7500 5235 8446 6215 8 8 8 8 8 8 491040 + 3837 519;520;521;518;1486;1487;551;552 3808 6160;6161;6162;6163;6164 8066;8067;8068;8069;8070;8071;8072;8073 8068 8 EDLAALEK Unmodified 887.46001 0.46001246 622;2783 P0DPH8;P0DPH7;Q6PEY2;Q9NY65;Q9NY65-2 TUBA3E;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 0 4 0 1 51.916 51.916 2 0.044169 15026 TMT1-3 76.221 27.66 99.211 161.2 140.82 132.44 124.95 174.46 94 160 145 131 131 167 1 1 1 1 1 1 13516 3838 622;2783 3809 6165 8074 8074 1 EDLIWELLNQAQEHFGK Unmodified 2069.0218 0.02180466 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 9 0 1 91.045 91.045 3 0.013877 27855 TMT1-8 42.913 22.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3839 451 3810 6166 8075 8075 1 EDLRLPEGDLGK Unmodified 1340.6936 0.69359423 1477 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 0 1 4 0.816 1 1 1 52.149 52.149 3 0.00029738 15094 TMT1-3 94.023 57.498 1340.1 1734 1617.4 1258.3 1601.8 1565 1266 1740 1649 1267 1638 1511 4 4 4 4 4 4 191510 3840 1477 3811 6167;6168;6169 8076;8077;8078;8079 8077 4 EDLSPSITQR Unmodified 1144.5724 0.57241646 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 2.5 0.5 1 1 41.9 41.9 2 2.331E-05 12052 TMT1-2 151.22 80.365 99.616 99.723 124.92 37.761 153.42 111.82 94 102 123 44 152 109 1 1 1 1 1 1 13907 3841 704 3812 6170;6171 8080;8081 8081 2 EDLTEIR Unmodified 874.43961 0.43961137 496 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 2 0 1 42.942 42.942 2 0.0034955 12142 TMT1-1 139.31 25.29 225.21 384.14 234.98 327.27 450.99 257.89 213 379 253 320 454 254 1 1 1 1 1 1 49621 3842 496 3813 6172 8082 8082 1 EDLVFIFWAPESAPLK Unmodified 1860.9662 0.96618726 865 P23528;Q9Y281-3;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 0 7.5 0.5 1 1 92.322 92.322 3 1.2575E-08 29839 TMT1-6 107.98 96.714 208.78 238.42 234.8 213.66 157.57 242.82 197 241 240 211 168 232 5 5 5 5 5 5 56061 3843 865 3814 6173;6174 8083;8084;8085;8086;8087 8083 5 EDLVVAPAGITLK Unmodified 1324.7602 0.76021723 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 6 0 1 67.042 67.042 3 0.00031719 20870 TMT1-5 65.805 40.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3844 667 3815 6175 8088 8088 1 EDLYLKPIQR Unmodified 1273.703 0.7030367 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 6 0 1 48.98 48.98 3 0.0027478 13781 TMT1-5 87.298 61.193 429.87 505.68 540.74 442.08 409.85 571.41 406 511 548 441 430 547 1 1 1 1 1 1 73975 3845 685 3816 6176 8089 8089 1 EDMAALEK Unmodified 905.41643 0.41643309 1491;2068;1492;2510 P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 0 0 0 0 0 2 0 1 48.299 48.299 3 0.00063335 14243 TMT1-1 79.906 36.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3846 1491;2068;2510;1492 3817 6177 8090 8090 1 EDMAALEKDYEEVGIDSYEDEDEGEE Unmodified 3008.1764 0.17644772 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 1 2.5 0.5 1 1 74.309 74.309 3;4 1.3323E-07 24746 TMT1-2 67.979 58.351 69.554 125.47 106.12 88.373 79.02 115.01 66 124 109 88 81 110 3 3 3 3 2 3 25206 3847 1492 3818 6178;6179 8091;8092;8093 8092 3 EDMAALEKDYEEVGVDSVEGEGEEEGEEY Unmodified 3235.3034 0.30343915 1491;2068 P68363;P68363-2;Q71U36-2;Q71U36 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 0 0 0 0 1 2.8 0.748 2 2 1 74.821 74.821 3;4 7.2115E-31 25035 TMT1-2 124.89 114.09 93.128 185.7 100.07 150.69 170.4 166.76 88 182 109 146 175 161 4 5 4 4 5 5 51139 3848 1491;2068 3819 6180;6181;6182;6183;6184 8094;8095;8096;8097;8098;8099 8097 6 EDPAYLHYYDPAGAEDPLGAIHLR Unmodified 2682.2714 0.27143042 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 3.88 1.45 1 2 2 2 1 65.809 65.809 3;4;5 1.1006E-38 20482 TMT1-3 154.42 151.49 1479.5 1640 1521.5 1432.2 1610.8 1861.1 1395 1659 1563 1421 1664 1789 14 14 14 14 14 14 1861900 3849 567 3820 6185;6186;6187;6188;6189;6190;6191;6192 8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113 8105 14 EDPLGEAQPQI Unmodified 1195.5721 0.57208211 2530 Q9BT40-2;Q9BT40 INPP5K Inositol polyphosphate 5-phosphatase K yes no 0 0 0 0 0 2 0 1 61.877 61.877 2 0.00017241 19581 TMT1-1 109.71 86.139 38.295 51.476 12.282 14.967 36.989 29.859 36 51 15 15 37 29 1 1 1 1 1 1 7392.5 3850 2530 3821 6193 8114 8114 1 EDPLLTPVPASENPFR Unmodified 1780.8996 0.89956426 1350 P59768 GNG2 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 yes yes 0 0 0 0 0 4 0 1 67.542 67.542 3 0.00028743 21132 TMT1-3 74.786 63.172 54.29 65.206 17.564 46.111 49.666 45.487 51 65 22 44 51 44 1 1 1 1 1 1 20322 3851 1350 3822 6194 8115 8115 1 EDPNLVPSISNK Unmodified 1311.667 0.66704513 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 0 4 0 1 54.05 54.05 3 0.0089884 15927 TMT1-3 60.364 35.509 299.57 359.65 381.68 264.98 334.22 299.6 283 363 385 269 341 290 2 2 2 2 2 2 38663 3852 633 3823 6195 8116;8117 8117 2 EDPNLVPSISNKR Unmodified 1467.7682 0.76815616 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 1 5.5 0.5 1 1 45.792 45.792 3 0.00013883 12319 TMT1-4 94.023 84.493 670.44 754.8 834.48 626.3 783.88 885.86 633 765 842 632 806 852 3 3 3 3 3 3 58211 3853 633 3824 6196;6197 8118;8119;8120 8118 3 EDPQTFYYAVAVVK Unmodified 1628.8086 0.80862399 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6 0 2 70.729 70.729 2;3 8.5784E-10 22297 TMT1-5 123.67 107.78 154.47 187.18 209.57 150.87 205.46 211.6 146 189 211 153 210 204 3 3 3 3 3 3 30674 3854 451 3825 6198;6199 8121;8122;8123 8121 3 EDPTVSALLTSEK Unmodified 1388.7035 0.70349021 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 4 0 1 61.971 61.971 3 5.5215E-11 18944 TMT1-3 135.02 120.14 229.85 242.34 297.17 214.78 307.21 239.61 217 247 298 218 311 233 2 2 2 2 2 2 68990 3855 1506 3826 6200 8124;8125 8124 2 EDQSILCTGESGAGK Unmodified 1550.6883 0.68825085 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 0 2.86 0.99 1 1 3 2 47.877 47.877 2;3;4 1.9091E-19 14395 TMT1-2 166.6 140 1415.1 1827.1 1917.4 1577.9 1963.3 1941.7 1338 1837 1945 1582 2010 1874 8 8 8 8 8 8 499660 3856 1019;1020;1029;2091 3827 6201;6202;6203;6204;6205;6206;6207 8126;8127;8128;8129;8130;8131;8132;8133 8129 8 EDQSILCTGESGAGKTENTK Unmodified 2123.9641 0.96409136 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 1 4 0 1 44.532 44.532 4 7.8505E-06 12146 TMT1-3 77.287 55.484 161.32 196.51 132.58 92.768 110.15 201.53 152 197 138 94 116 192 1 1 1 1 1 1 22515 3857 1019;1020;1029;2091 3828 6208 8134 8134 1 EDQTEYLEER Unmodified 1310.5626 0.56263964 545;561;1954 P08238;Q58FF7;P07900;P07900-2;Q58FF6 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 0 0 0 0 0 2 0 1 40.924 40.924 2 8.333E-10 11272 TMT1-1 176.95 127.23 153.13 225.36 222.15 157.35 228.24 209.89 145 225 225 160 232 203 2 2 2 2 2 2 61323 3858 561;545;1954 3829 6209 8135;8136 8135 2 EDQVIQLMNAIFSK Unmodified 1634.8338 0.83379288 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 9 0 1 95.606 95.606 3 0.00096049 29443 TMT1-8 59.862 33.996 23.359 13.886 29.819 13.64 51.965 21.969 22 15 29 15 51 22 1 1 1 1 1 1 3894.3 3859 479 3830 6210 8137 8137 1 EDRLEQAK Unmodified 987.49852 0.49852324 2124 Q86WV6 TMEM173 Stimulator of interferon genes protein yes yes 0 0 0 0 1 2.5 0.5 1 1 32.119 32.119 3 0.010947 8122 TMT1-2 80.688 49.316 305.93 509.17 449.65 164.45 349.86 374.84 290 505 452 181 354 361 2 2 2 2 2 2 20160 3860 2124 3831 6211;6212 8138;8139 8139 2 EDRYEEEIK Unmodified 1209.5513 0.55134667 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 1 2 0 1 38.07 38.07 3 0.00055899 10178 TMT1-1 117.02 68.931 630.01 1239.7 1267.6 894.31 1201 1112.7 600 1225 1280 908 1224 1076 2 2 2 2 2 2 74963 3861 592;593;594;595 3832 6213 8140;8141 8140 2 EDSAEVLK Unmodified 889.43928 0.43927702 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 2 0 1 42.941 42.941 2 0.017671 12102 TMT1-1 90.657 9.1088 68.866 94.237 67.921 113.66 75.861 75.653 65 94 73 109 80 73 1 1 1 1 1 1 6048.5 3862 2263 3833 6214 8142 8142 1 EDSAEVLKK Unmodified 1017.5342 0.53424004 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 1 4.5 0.5 1 1 40.948 40.948 3 0.006215 10705 TMT1-3 78.098 28.137 686.04 633.43 839.6 527.24 804.41 725.38 647 652 836 542 816 702 2 2 2 2 2 2 40235 3863 2263 3834 6215;6216 8143;8144 8143 2 EDSARPGAHAK Unmodified 1137.5527 0.55268407 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 1 4 0 1 21.974 21.974 4 0.018365 3751 TMT1-3 56.359 30.7 26.589 21.254 21.59 18.064 17.21 22.961 25 22 22 18 18 22 1 1 1 1 1 1 1625.6 3864 1675 3835 6217 8145 8145 1 EDSHPFDLGLYNEAVK Unmodified 1832.8581 0.85809337 1016 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 0 4 0 1 60.596 60.596 3 1.611E-11 18460 TMT1-3 119.47 93.609 77.65 79.097 47.083 66.49 92.981 66.637 73 80 51 65 94 65 1 1 1 1 1 1 15327 3865 1016 3836 6218 8146 8146 1 EDSLDSVLFLK Unmodified 1264.6551 0.65508346 1731 Q13620-3;Q13620-1;Q13620 CUL4B Cullin-4B no no 0 0 0 0 0 5 0 1 75.223 75.223 3 0.0026363 23899 TMT1-4 76.143 42.182 30.849 28.426 20.945 22.399 21.198 22.847 29 29 22 22 22 22 1 1 1 1 1 1 2658 3866 1731 3837 6219 8147 8147 1 EDSNLTLQEK Unmodified 1175.567 0.56699673 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 2.5 0.5 1 1 44.831 44.831 2;3 0.00016796 13150 TMT1-2 104.43 65.129 153.62 187.88 170.87 120.16 217.67 140.9 145 189 174 123 218 138 2 2 2 2 2 2 18061 3867 1139 3838 6220;6221 8148;8149 8149 2 EDSPSEDPVFLR Unmodified 1389.6412 0.64122431 1742 Q13976-2;Q13976 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 2 0 1 52.77 52.77 2 3.5116E-08 15980 TMT1-1 135.28 107.51 68.979 86.998 54.946 74.625 100.43 82.414 65 87 59 73 102 80 2 2 2 2 2 2 12535 3868 1742 3839 6222 8150;8151 8150 2 EDSQRPGAHLTVK Unmodified 1436.7372 0.73719038 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 1 6 1 1 1 31.57 31.57 4 0.00067074 6365 TMT1-6 78.486 57.823 462.21 756.62 483.89 477.78 318.77 800 437 748 511 469 352 759 2 2 2 2 2 2 54206 3869 601 3840 6223;6224 8152;8153 8153 2 EDSVKPGAHLTVK Unmodified 1379.7409 0.74087877 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 7 1 1 1 38.795 38.795 4 9.5775E-05 9727 TMT1-5 94.728 63.856 568.14 732.34 553.92 602.5 729.65 852.23 536 733 580 594 752 819 2 2 2 2 2 2 53912 3870 1259 3841 6225;6226 8154;8155 8154 2 EDTEEHHLR Unmodified 1164.516 0.51596421 848;601 P22626;P22626-2;P09651-3;P09651-2;P09651;Q32P51 HNRNPA2B1;HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoproteins A2/B1;Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 0 0 0 0 0 2 0 1 19.863 19.863 3 0.0047759 3416 TMT1-1 76.17 60.63 4.2428 3.8867 4.9779 3.9837 4.8687 5.1911 4 4 5 4 5 5 1 1 1 1 1 1 414.26 3871 848;601 3842 6227 8156 8156 1 EDTEEHHLRDYFEEYGK Unmodified 2195.9396 0.93959117 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 3 0 1 50.669 50.669 5 2.9594E-06 15544 TMT1-2 89.866 73.372 84.533 146.99 95.085 135.45 109.91 151.43 80 145 102 131 116 145 1 1 1 1 1 1 8439.4 3872 848 3843 6228 8157 8157 1 EDTEEYNLR Unmodified 1167.5044 0.50439647 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 0 2 0 1 38.309 38.309 2 1.3298E-13 10296 TMT1-1 185.47 109.33 61.412 118.66 37.539 59.27 100.33 105.87 58 116 44 58 102 102 1 1 1 1 1 1 11339 3873 1259 3844 6229 8158 8158 1 EDTESLEIFQNEVAR Unmodified 1778.8323 0.83227255 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 2.33 0.471 2 1 63.965 63.965 2;3 8.7709E-12 20473 TMT1-1 128.95 108.57 106.88 144.92 128.73 84.87 135.53 143.24 101 145 131 87 138 138 4 4 4 4 4 4 38676 3874 2521 3845 6230;6231;6232 8159;8160;8161;8162 8160 4 EDTIVSQTQDFTK Unmodified 1510.7151 0.71511753 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 3.5 0.5 1 1 54.929 54.929 3 7.0458E-11 16168 TMT1-3 132.06 100.07 185.88 266.99 273.02 218.71 291.49 265.64 176 267 277 220 297 257 2 2 2 2 2 2 43724 3875 740 3846 6233;6234 8163;8164 8164 2 EDVLTLLLPVMGDSK Unmodified 1628.8695 0.86950968 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 7 0 1 92.646 92.646 3 0.00075295 29961 TMT1-6 71.344 61.811 70.284 48.714 48.52 75.979 48.826 60.435 66 51 51 73 52 58 2 2 2 2 2 2 4402 3876 1683 3847 6235 8165;8166 8165 2 EDVPTFGPPLPSPPVFQK Unmodified 1951.0091 0.0091147084 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 7 0 1 75.454 75.454 3 3.6617E-14 23581 TMT1-6 119.96 100.12 108.11 130.19 114.04 94.251 90.092 113.62 102 131 117 94 94 109 2 2 2 2 2 2 15942 3877 2004 3848 6236 8167;8168 8168 2 EDVTMATVMGSLPDVR Unmodified 1719.8172 0.81715654 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 5 0 1 72.098 72.098 3 5.9404E-16 22658 TMT1-4 134.14 104.14 30.697 51.746 26.795 29.717 20.349 37.795 29 51 29 29 22 36 1 1 1 1 1 1 9471.6 3878 772 3849 6237 8169 8169 1 EDYESLPK Unmodified 979.44984 0.44984171 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 2 0 1 46.306 46.306 2 0.0058126 13455 TMT1-1 113.71 94.926 99.109 152.28 165.66 121.22 177.82 172.95 94 152 167 123 181 167 1 1 1 1 1 1 15230 3879 3006 3850 6238 8170 8170 1 EEAAAVPAAAPDDLALLK Unmodified 1763.9305 0.93053004 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 4 0 1 68.158 68.158 3 0.015807 21451 TMT1-3 42.044 21.938 37.852 89.097 54.929 51.422 55.688 76.229 36 87 58 51 58 73 1 1 1 1 1 1 7905 3880 2107 3851 6239 8171 8171 1 EEAEDYLVQGGMSDGLYLLR Unmodified 2257.0573 0.057263467 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 4 0 1 78.754 78.754 3 0.034826 25522 TMT1-3 35.421 30.212 0 15.451 30.451 0 0 23.452 0 15 29 0 0 22 0 1 1 0 0 1 6902.9 3881 1115 3852 6240 8172 8172 1 EEAENTLQSFR Unmodified 1322.6103 0.61025853 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 46.821 46.821 2 9.3774E-54 14056 TMT1-2 233.54 173.63 779.8 1448.3 982.86 842.49 1255.1 1191.2 739 1426 1027 846 1276 1151 5 5 5 5 5 5 385010 3882 575 3853 6241;6242;6243;6244 8173;8174;8175;8176;8177;8178 8177 6 EEAERPLHFAEK Unmodified 1454.7154 0.7153923 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 4 0 1 38.382 38.382 4 0.00080642 9688 TMT1-3 80.871 45.134 146.36 166.42 147.55 139.01 161.02 211.8 138 168 152 138 167 203 1 1 1 1 1 1 10815 3883 2440 3854 6245 8179 8179 1 EEAPQWLESDSCQK Unmodified 1705.7254 0.72536464 2140 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 0 0 0 0 0 3 0 1 53.857 53.857 3 2.024E-06 16783 TMT1-2 83.856 64.781 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3884 2140 3855 6246 8180 8180 1 EEAPSLR Unmodified 800.40283 0.40283194 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 0 2 0 1 33.187 33.187 2 0.0032903 8260 TMT1-1 87.284 23.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3885 438 3856 6247 8181 8181 1 EEAPSLRPAPPPISGGGYR Unmodified 1949.9959 0.99592426 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 4.6 2.06 1 1 1 1 1 45.459 45.459 3 1.5366E-35 12458 TMT1-3 162.82 120.78 1358.2 1763.6 1614.8 1152.9 1752 1809.1 1283 1769 1644 1173 1785 1744 7 7 7 7 7 7 423660 3886 438 3857 6248;6249;6250;6251;6252 8182;8183;8184;8185;8186;8187;8188 8183 7 EEASDYLELDTIK Unmodified 1524.7195 0.71953421 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 3 0.816 1 1 1 64.944 64.944 3 1.8293E-12 20039 TMT1-3 153.74 93.249 482.95 582.44 572.12 453.89 612.03 638.13 456 587 582 457 626 615 5 5 5 5 5 5 117570 3887 708 3858 6253;6254;6255 8189;8190;8191;8192;8193 8193 5 EEASGSSVTAEEAK Unmodified 1393.6209 0.6208828 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 2 0 1 36.282 36.282 2 5.1014E-28 9491 TMT1-1 163.71 149.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3888 676 3859 6256 8194 8194 1 EEASGSSVTAEEAKK Unmodified 1521.7158 0.71584581 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 2.67 0.471 1 2 35.831 35.831 3;4 8.3696E-19 9411 TMT1-1 157.23 131.12 387.53 601.97 361.38 360 460.81 567.82 366 596 384 357 475 545 3 3 3 3 3 3 43659 3889 676 3860 6257;6258;6259 8195;8196;8197 8195 3 EEASNFR Unmodified 851.37735 0.37734547 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 0 2.5 0.5 1 1 29.3 29.3 2 0.011327 7012 TMT1-2 104.37 82.595 108.31 107 99.832 80.054 76.343 106.55 102 109 102 80 80 102 2 2 2 2 2 2 20314 3890 892 3861 6260;6261 8198;8199 8199 2 EEAYHSR Unmodified 890.38824 0.38824451 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 2 0 1 18.412 18.412 3 0.0088235 3290 TMT1-1 83.753 52.463 5.2851 9.1244 5.697 4.9594 8.8287 10.408 5 9 6 5 9 10 2 2 2 2 2 2 722.81 3891 1915 3862 6262 8200;8201 8200 2 EEDRPPLR Unmodified 1010.5145 0.51450765 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 2 0 1 26.799 26.799 3 0.030261 5800 TMT1-1 65.313 44.411 15.779 29.32 28.213 29.776 12.724 46.541 15 29 29 29 15 44 1 1 1 1 1 1 2568.1 3892 1286 3863 6263 8202 8202 1 EEEIAALVIDNGSGMCK Acetyl (Protein N-term);Oxidation (M) 1892.8496 0.84957888 1479 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes yes 0 1 1 0 0 3 0 1 81.085 81.085 3 9.3602E-07 27248 TMT1-2 51.265 36.234 61.804 33.4 44.033 28.266 42.901 53.142 58 36 44 29 44 51 1 1 1 1 1 1 25525 3893 1479 3864 6264 8203 8203 238 1 EEEIAALVIDNGSGMCK Acetyl (N-term) 1876.8547 0.85466426 1479 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes yes 1 0 0 0 0 3.67 0.471 1 2 85.935 85.935 2;3 1.1234E-71 28293 TMT1-3 95.477 77.738 404 501.54 383.46 337.87 463.19 589.07 381 503 398 338 477 565 4 4 4 4 4 4 156110 3894 1479 3864 6265;6266;6267 8204;8205;8206;8207;8208 8208 5 EEELQAALAR Unmodified 1128.5775 0.57750184 1019;1029;2091 P35579;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 no no 0 0 0 0 0 2.5 0.5 1 1 50.181 50.181 2 0.0012388 15323 TMT1-2 103.19 60.964 237.86 381.54 276.22 302.36 308.39 362.17 225 378 290 297 320 348 4 4 4 4 4 4 61850 3895 1019;1029;2091 3865 6268;6269 8209;8210;8211;8212 8212 4 EEEPVKK Unmodified 857.44945 0.44944778 1748;2487 Q14103-3;Q14103;Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPD;HNRNPAB Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein A/B no no 0 0 0 0 1 4 0 1 32.007 32.007 3 0.018361 7122 TMT1-3 78.496 21.393 214.71 332.63 239.97 407.39 592.2 242.14 203 330 258 396 592 243 1 1 1 1 1 1 15601 3896 1748;2487 3866 6270 8213 8213 1 EEEVSLQGINTR Unmodified 1373.6787 0.67867245 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 0 2 0 1 47.994 47.994 2 0.0021082 14109 TMT1-1 87.001 55.049 38.047 65.895 41.863 35.904 50.428 36.937 36 65 44 36 51 36 1 1 1 1 1 1 4150.3 3897 3064 3867 6271 8214 8214 1 EEFASTCPDDEEIELAYEQVAK Unmodified 2572.1163 0.11629449 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 3.2 0.748 1 2 2 73.057 73.057 3;4 1.0253E-36 23787 TMT1-1 147.06 132.45 619.13 866.79 723.07 674.73 629.91 865.74 585 865 747 666 659 829 10 10 11 10 10 11 424040 3898 59 3868 6272;6273;6274;6275;6276 8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225 8216 11 EEGASPLDFD Unmodified 1078.4455 0.44548461 1129 P46459 NSF Vesicle-fusing ATPase yes yes 0 0 0 0 0 2 0 1 63.696 63.696 2 0.0079441 20263 TMT1-1 87.251 82.56 46.811 26.956 44.504 28.08 51.301 21.988 44 29 44 29 51 22 1 1 1 1 1 1 9693.1 3899 1129 3869 6277 8226 8226 1 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK Unmodified 3484.729 0.72898327 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5.5 0.5 2 2 75.523 75.523 4;5 2.295E-27 24161 TMT1-5 111.68 106.42 1373.2 1536.8 1631.5 1202.6 1321.8 1598.6 1296 1557 1649 1212 1369 1535 8 8 8 8 8 8 600940 3900 831 3870 6278;6279;6280;6281 8227;8228;8229;8230;8231;8232;8233;8234 8231 8 EEHLCTQR Unmodified 1071.4767 0.47674194 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 2.75 1.48 1 1 1 1 22.744 22.744 3 0.0010434 4267 TMT1-1 118.33 73.173 287.53 312.12 282.1 282.57 354.19 334.21 271 316 291 280 362 323 7 7 7 7 7 7 63344 3901 519;520 3871 6282;6283;6284;6285 8235;8236;8237;8238;8239;8240;8241 8236 7 EEIGSSPFFER Unmodified 1296.5986 0.59863121 233 O60711;O60711-2 LPXN Leupaxin yes no 0 0 0 0 0 4 0 1 55.94 55.94 2 1.5464E-07 16617 TMT1-3 114.4 98.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3902 233 3872 6286 8242 8242 1 EEIIEAFVQELR Unmodified 1474.7668 0.76675917 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 5 0 1 86.783 86.783 2 0.0036424 28397 TMT1-4 80.245 45.357 15.702 36.66 34.982 37.971 20.482 22.868 15 36 36 37 22 22 1 1 1 1 1 1 3067.1 3903 1225 3873 6287 8243 8243 1 EEIIPVAAEYDK Unmodified 1375.6871 0.68711187 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 3 0.816 1 1 1 60.629 60.629 3 9.6365E-05 19209 TMT1-1 98.902 92.466 176.62 262.28 210.49 196.74 262.75 279.26 167 261 218 196 269 269 3 3 3 3 3 3 35332 3904 653 3874 6288;6289;6290 8244;8245;8246 8244 3 EEIKDDNPHLK Unmodified 1336.6623 0.6622941 2675 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 1 4 0 1 37.396 37.396 4 0.0043678 9322 TMT1-3 72.652 41.825 183.7 294.02 256.15 124.02 207.14 259.52 174 292 259 131 212 249 1 1 1 1 1 1 9955.9 3905 2675 3875 6291 8247 8247 1 EEILAQAK Unmodified 900.49165 0.49164694 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.75 1.64 1 1 2 46.931 46.931 2;3 0.00075436 12973 TMT1-3 148.38 83.344 3037.3 4839.5 4970.2 3617.7 5759.5 4749.9 2881 4819 5025 3680 5821 4610 7 7 7 7 7 7 873750 3906 1019 3876 6292;6293;6294;6295 8248;8249;8250;8251;8252;8253;8254 8249 7 EEILSGALR Unmodified 986.53966 0.53965977 2631 Q9H2M9;Q9H2M9-2 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes no 0 0 0 0 0 5 0 1 51.702 51.702 2 0.0019552 14685 TMT1-4 109.48 8.2257 60.862 140.87 111.13 126.27 82.097 90.399 58 138 116 123 87 87 1 1 1 1 1 1 9092.9 3907 2631 3877 6296 8255 8255 1 EEIQPGDIVIIDQFIDR Unmodified 1999.0262 0.026221336 1672 Q13126-4;Q13126;Q13126-3;Q13126-2;Q13126-7;Q13126-6;Q13126-5 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 0 4 0 1 83.752 83.752 3 0.00023907 27450 TMT1-3 73.11 59.256 15.82 29.433 21.297 14.854 14.473 15.577 15 29 22 15 15 15 1 1 1 1 1 1 4192.1 3908 1672 3878 6297 8256 8256 1 EEIQSSISGVTAAYNR Unmodified 1723.8377 0.83769228 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4.5 0.5 1 1 54.278 54.278 2;3 3.4418E-19 15945 TMT1-3 155.43 120.65 23.34 28.944 20.231 38.584 34.6 37.389 22 29 22 37 36 36 1 1 1 1 1 1 10879 3909 1139 3879 6298;6299 8257;8258 8257 2 EEIVDKYDLFVGSQATDFGEALVR Unmodified 2700.3283 0.3282766 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-6;O43852-15;O43852-8 CALU Calumenin yes no 0 0 0 0 1 6 0 1 79.739 79.739 3 0.00020058 25859 TMT1-5 54.306 40.851 46.783 43.068 35.52 13.744 28.413 37.565 44 44 36 15 29 36 1 1 1 1 1 1 8394.4 3910 209 3880 6300 8259 8259 1 EEIVELMR Unmodified 1017.5165 0.51648149 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 0 4 0 1 58.265 58.265 2 0.028301 17516 TMT1-3 83.005 41.976 84.918 101.65 68.829 81.475 99.056 113.37 80 102 73 80 102 109 1 1 1 1 1 1 15765 3911 1099 3881 6301 8260 8260 1 EEIVQFFSGLEIVPNGITLPVDPEGK Unmodified 2826.4691 0.46912717 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 7 0 1 99.438 99.438 4 0.0010898 32359 TMT1-6 42.557 29.236 7.4331 15.459 0 16.124 14.414 15.579 7 15 0 15 15 15 1 1 0 1 1 1 2248.4 3912 1271 3882 6302 8261 8261 1 EELEEVIKDI Unmodified 1215.6234 0.62344898 924 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 0 0 1 2.5 0.5 1 1 74.857 74.857 2;3 0.007648 24915 TMT1-2 74.841 49.455 74.321 90.884 55.542 55.404 74.446 103.41 70 91 59 55 77 99 3 3 3 3 3 3 14317 3913 924 3883 6303;6304 8262;8263;8264 8263 3 EELEQSK Unmodified 861.40798 0.40797689 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 38.486 38.486 3 0.033947 9427 TMT1-4 57.281 7.1544 108.13 121.6 118.32 155.5 190.7 208.82 102 123 123 152 196 201 1 1 1 1 1 1 16071 3914 1805 3884 6305 8265 8265 1 EELGLIEQAYDNPHEALSR Unmodified 2183.0495 0.049475973 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 3 0 1 61.111 61.111 3 1.3792E-09 19644 TMT1-2 93.269 75.352 23.104 28.288 60.396 12.255 28.738 30.094 22 29 58 15 29 29 1 1 1 1 1 1 9126.4 3915 2028 3885 6306 8266 8266 1 EELPDENK Unmodified 972.44001 0.4400053 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 2 0 1 39.875 39.875 2 0.0058762 10986 TMT1-1 112.84 49.362 99.154 161.04 150.59 83.274 151.07 119.35 94 160 152 87 152 116 1 1 1 1 1 1 22126 3916 372 3886 6307 8267 8267 1 EELQSQVELLNSFEK Unmodified 1791.8891 0.88905915 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 5 0 1 71.093 71.093 3 0.005758 22375 TMT1-4 55.097 32.943 38.113 43.415 49.733 59.527 47.986 76.449 36 44 51 58 51 73 1 1 1 1 1 1 6101.9 3917 934 3887 6308 8268 8268 1 EELTLEGIR Unmodified 1058.5608 0.56078914 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 0 2 0 1 53.633 53.633 2 0.0056978 16358 TMT1-1 96.668 47.245 99.758 91.483 108.05 87.354 68.972 98.236 94 94 109 87 73 94 1 1 1 1 1 1 10271 3918 1358 3888 6309 8269 8269 1 EELYQNLTR Unmodified 1164.5775 0.57750184 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 48.022 48.022 2 0.00090395 13496 TMT1-3 86.18 40.462 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3919 1737 3889 6310 8270 8270 1 EEMVSYFLR Unmodified 1172.5536 0.55359527 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 7 0 1 66.818 66.818 2 0.0020867 20150 TMT1-6 106.6 66.554 84.818 92.739 93.205 56.367 78.239 83.047 80 94 94 58 80 80 1 1 1 1 1 1 11396 3920 2085 3890 6311 8271 8271 1 EENAEQQALAAK Unmodified 1300.6259 0.62590859 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 2 0 1 43.223 43.223 3 0.024042 12198 TMT1-1 50.563 37.159 37.915 65.529 64.264 43.631 33.561 60.87 36 65 65 44 36 58 1 1 1 1 1 1 8906.4 3921 2944 3891 6312 8272 8272 1 EENLIPYSPDVQIHAER Unmodified 2008.9854 0.98541915 2191 Q8N766-4;Q8N766-3;Q8N766-2;Q8N766 EMC1 ER membrane protein complex subunit 1 yes no 0 0 0 0 0 3 0 1 55.442 55.442 3 0.0011848 17406 TMT1-2 47.047 41.591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3922 2191 3892 6313 8273 8273 1 EENPYAR Unmodified 877.393 0.39299553 1290 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 0 0 2 0 1 28.728 28.728 2 0.010552 6544 TMT1-1 107.59 86.066 38.122 43.438 48.303 91.602 32.418 29.989 36 44 51 87 36 29 1 1 1 1 1 1 8386.3 3923 1290 3893 6314 8274 8274 1 EENVGLHQTLDQTLNELNCI Unmodified 2339.1063 0.10633893 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 0 4.29 1.03 2 2 2 1 75.133 75.133 3;4 1.182E-23 24020 TMT1-4 135.04 120.6 295.59 404.6 318.32 380.98 353.07 469.63 279 404 331 372 367 450 11 12 11 12 11 12 217850 3924 1486;1487 3894 6315;6316;6317;6318;6319;6320;6321 8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286 8281 12 EEPCLLK Unmodified 887.44225 0.44225391 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 0 1 47.712 47.712 2 0.0098994 13441 TMT1-3 110.36 40.095 4901.6 6063.9 6567.5 4497.3 6753.8 6570 4633 6113 6614 4589 6870 6344 2 2 2 2 2 2 781930 3925 831 3895 6322 8287;8288 8288 2 EEPCLLKR Unmodified 1043.5434 0.54336494 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5 0 1 39.169 39.169 3 0.0068277 9662 TMT1-4 87.696 55.064 1626.9 2044.7 1475.2 1400.6 1226.3 2561.8 1534 2048 1542 1383 1318 2436 2 2 2 2 2 2 164860 3926 831 3896 6323 8289;8290 8289 2 EEPFFPPPEEFVFIHAVPVEER Unmodified 2640.29 0.2900406 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 79.485 79.485 3 8.5779E-07 25865 TMT1-3 77.287 66.449 23.348 31.07 36.349 38.239 72.549 59.758 22 30 37 37 73 58 2 2 3 2 3 3 13324 3927 1915 3897 6324;6325 8291;8292;8293 8292 3 EEPIYIITEYMAK Unmodified 1598.7902 0.79019673 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 5 0 1 82.328 82.328 3 9.347E-05 26607 TMT1-4 93.011 81.74 38.33 35.382 20.159 29.832 35.258 29.908 36 36 22 29 36 29 1 1 1 1 1 1 7855 3928 550 3898 6326 8294 8294 1 EEPVEALTFSR Unmodified 1276.6299 0.62993134 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 55.925 55.925 2 1.5641E-16 17302 TMT1-1 182.46 160.47 276.78 371.07 236.41 355.71 212.83 423.52 261 370 255 342 233 403 3 3 3 3 3 3 67193 3929 1797 3899 6327;6328 8295;8296;8297 8295 3 EEQCILYLGPR Unmodified 1376.6758 0.67583567 1706 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 0 0 4 0 1 57.526 57.526 2 2.7E-06 17242 TMT1-3 102.53 63.492 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3930 1706 3900 6329 8298 8298 1 EEQTPQNK Unmodified 972.45124 0.45123869 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 2.5 0.5 1 1 27.516 27.516 3 0.0092593 6301 TMT1-2 75.213 47.106 116.12 83.578 69.402 65.134 94.347 59.136 109 87 72 65 95 58 2 2 2 2 2 2 5776.1 3931 385 3901 6330;6331 8299;8300 8300 2 EERSWEQK Unmodified 1090.5043 0.5043369 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 1 3 0 1 41.883 41.883 3 0.041767 12009 TMT1-2 60.436 0 84.369 115.24 149.51 170.87 145.98 150.4 80 116 152 167 152 145 1 1 1 1 1 1 31735 3932 1891 3902 6332 8301 8301 1 EESAADWALYTYEDGSDDLK Unmodified 2276.9597 0.95971749 1897 Q16643;Q16643-3 DBN1 Drebrin yes no 0 0 0 0 0 3 0 1 73.321 73.321 3 9.5388E-18 24386 TMT1-2 122.22 112.24 38.318 27.795 28.551 21.679 35.377 37.367 36 29 29 22 36 36 1 1 1 1 1 1 7379 3933 1897 3903 6333 8302 8302 1 EESEQIVLIGSK Unmodified 1330.698 0.6980109 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 4 0 1 56.907 56.907 3 0.00085441 16970 TMT1-3 78.763 56.531 37.973 74.323 47.161 75.656 70.279 75.813 36 73 51 73 73 73 1 1 1 1 1 1 11190 3934 1115 3904 6334 8303 8303 1 EESGKPGAHVTVK Unmodified 1337.6939 0.69392858 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 6.5 1.12 1 1 1 1 32.343 32.343 4 3.7105E-05 6635 TMT1-6 101.32 66.433 1459.9 2678.7 1778.1 1585.4 1890.8 2277.4 1383 2638 1864 1580 1952 2187 6 6 6 6 6 6 160330 3935 848 3905 6335;6336;6337;6338 8304;8305;8306;8307;8308;8309 8307 6 EESLDSDLYAELR Unmodified 1538.71 0.71003215 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 2 0 3 62.482 62.482 2;3 2.1966E-36 19874 TMT1-1 205.52 138.86 223.92 235.55 218.47 218.08 323.3 254.08 211 239 225 217 327 247 3 3 3 3 3 3 150470 3936 448 3906 6339;6340;6341 8310;8311;8312 8311 3 EETQPPVALKK Unmodified 1238.6871 0.68705229 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 1 6 0 1 42.857 42.857 3 0.00036353 11296 TMT1-5 99.671 77.138 160.55 281.8 189.41 135.29 226.11 209.95 152 278 197 138 229 203 1 1 1 1 1 1 19228 3937 2207 3907 6342 8313 8313 1 EEVEILK Unmodified 858.46985 0.46984887 2474 Q99576-4;Q99576;Q99576-3 TSC22D3 TSC22 domain family protein 3 yes no 0 0 0 0 0 2.5 0.5 1 1 51.689 51.689 2 0.014822 15663 TMT1-1 101.64 17.4 137.47 187.74 180.6 98.061 141.48 165.46 130 188 182 102 145 159 2 2 2 2 2 2 14768 3938 2474 3908 6343;6344 8314;8315 8314 2 EEVEVLK Unmodified 844.4542 0.45419881 3005 Q9Y3Q8-2;Q9Y3Q8;Q15714-2;Q15714-3;O75157-2;O75157;Q15714 TSC22D4;TSC22D1;TSC22D2 TSC22 domain family protein 4;TSC22 domain family protein 1;TSC22 domain family protein 2 yes no 0 0 0 0 0 2.5 0.5 1 1 47.874 47.874 2 0.011136 14125 TMT1-1 105.12 21.316 214.84 306 241.24 147.48 227.61 271.73 203 305 247 152 233 261 2 2 2 2 2 2 32045 3939 3005 3909 6345;6346 8316;8317 8316 2 EEVGEEAIVELVENGKK Unmodified 1870.9524 0.95238769 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4 0 1 69.946 69.946 4 0.00022561 22172 TMT1-3 72.634 55.556 37.902 96.792 39.999 36.149 43.344 29.677 36 94 44 36 44 29 1 1 1 1 1 1 4246.3 3940 1019 3910 6347 8318 8318 1 EEVGQYLK Unmodified 964.48656 0.48656157 2008 Q6GMV3 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 0 0 0 0 0 4 0 1 48.482 48.482 2 0.00099194 13678 TMT1-3 93.162 41.375 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3941 2008 3911 6348 8319 8319 1 EEVKEPPGTNTVILEYAHR Unmodified 2181.1066 0.10659692 2523 Q9BSF0 C2orf88 Small membrane A-kinase anchor protein yes yes 0 0 0 0 1 4 0 1 49.681 49.681 4 7.644E-07 14168 TMT1-3 86.727 61.528 107.69 120.39 192.38 97.615 127.87 136 102 123 189 102 131 131 1 1 1 1 1 1 15641 3942 2523 3912 6349 8320 8320 1 EEVPGRR Unmodified 841.44061 0.44061443 828 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 1 2 0 1 21.388 21.388 3 0.025307 3750 TMT1-1 73.039 31.537 23.197 28.548 44.508 28.518 27.99 30.115 22 29 44 29 29 29 1 1 1 1 1 1 2059.9 3943 828 3913 6350 8321 8321 1 EEVSSWR Unmodified 891.40865 0.4086456 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 3 0 1 37.913 37.913 2 0.0017578 10479 TMT1-2 92.677 48.256 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3944 1754 3914 6351 8322 8322 1 EEVVGVAQAINK Unmodified 1255.6772 0.67721588 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 5 0 1 53.895 53.895 3 0.00019547 15563 TMT1-4 91.961 58.766 68.538 124.63 97.219 119.46 81.347 121.33 65 123 102 116 87 116 1 1 1 1 1 1 9059.1 3945 322 3915 6352 8323 8323 1 EEVVTVETWQEGSLK Unmodified 1732.8519 0.85194536 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 4 0 2 62.605 62.605 3 3.9517E-15 19289 TMT1-3 136.33 117.73 122.61 166.57 170.46 161.53 169.7 142.27 116 167 174 160 174 138 2 2 2 2 2 2 35172 3946 583 3916 6353;6354 8324;8325;8326 8325 3 EEWQSEHIK Unmodified 1184.5462 0.54620171 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 4 0 1 39.386 39.386 3 4.0529E-05 10077 TMT1-3 114.5 99.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3947 2662 3917 6355 8327 8327 1 EEYLLLK Unmodified 906.50623 0.50623438 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 5 0 1 60.623 60.623 2 0.042111 18134 TMT1-4 85.265 25.114 68.584 102.09 108.68 62.54 107.81 97.128 65 102 109 65 109 94 1 1 1 1 1 1 14601 3948 1723 3918 6356 8328 8328 1 EEYVLNDIGVIFYGEVNDIK Unmodified 2328.1525 0.15254406 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 5 0 1 91.97 91.97 3 3.5727E-09 30378 TMT1-4 78.674 62.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3949 393 3919 6357 8329 8329 1 EFADSLGIPFLETSAK Unmodified 1723.8669 0.86686715 1444;2616 P62820;P62820-2;Q9H0U4;Q92928 RAB1A;RAB1B;RAB1C Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 0 0 0 0 0 5.57 1.92 1 4 2 81.153 81.153 2;3;4 3.1187E-18 26421 TMT1-5 145.86 117.89 1567.4 2211.7 1782.9 1535.7 1901.3 2432.7 1481 2206 1841 1535 1965 2333 9 9 9 9 9 9 468390 3950 1444;2616 3920 6358;6359;6360;6361;6362;6363;6364 8330;8331;8332;8333;8334;8335;8336;8337;8338 8333 9 EFAGEDTSDLFLEER Unmodified 1756.7792 0.77917435 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 2 0 1 65.999 65.999 3 6.2171E-08 21034 TMT1-1 111.64 93.726 46.678 66.517 33.461 52.678 56.949 37.817 44 66 37 51 58 37 2 2 2 2 2 2 12553 3951 121 3921 6365 8339;8340 8339 2 EFAKFEEER Unmodified 1183.551 0.55095274 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 4 0 1 44.289 44.289 3 0.0047539 12028 TMT1-3 83.862 30.105 184.41 216.15 201.49 144.12 125.04 369.53 174 218 205 145 138 350 1 1 1 1 1 1 19962 3952 484 3922 6366 8341 8341 1 EFAQIIK Unmodified 847.48035 0.48035398 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 7 0 1 55.316 55.316 2 0.01669 15632 TMT1-6 100.19 21.072 77.253 124.4 75.422 73.724 83.45 121.27 73 123 80 73 87 116 1 1 1 1 1 1 7843.9 3953 553 3923 6367 8342 8342 1 EFASHLQQLQDALNELTEEHSK Unmodified 2566.23 0.22995953 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 6 0 1 73.856 73.856 5 0.020677 23549 TMT1-5 33.909 18.655 30.561 51.368 49.972 44.321 42.162 53.163 29 51 51 44 44 51 1 1 1 1 1 1 3935.6 3954 1805 3924 6368 8343 8343 1 EFATLIIDILSEAK Unmodified 1561.8603 0.86032521 2978 Q9Y2X7-3;Q9Y2X7 GIT1 ARF GTPase-activating protein GIT1 yes no 0 0 0 0 0 8.5 0.5 1 1 106.55 106.55 3 2.0313E-07 33741 TMT1-7 107.99 88.416 21.215 19.437 24.688 24.451 16.459 27.246 20 20 25 24 17 26 3 3 3 3 2 3 2947.4 3955 2978 3925 6369;6370 8344;8345;8346 8344 3 EFDDLSPEQQR Unmodified 1362.6052 0.60517315 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 2 0 1 47.191 47.191 2 1.3622E-31 13768 TMT1-1 206.73 153.64 247.12 280.31 247.73 202.85 284.75 270.1 233 283 254 204 290 261 3 3 3 3 3 3 51169 3956 2344 3926 6371 8347;8348;8349 8348 3 EFDELNPSAQR Unmodified 1304.5997 0.59969384 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 2.5 0.5 1 1 47.867 47.867 2;3 0.00014961 14184 TMT1-1 110.84 83.791 185.58 216.35 184.88 152.23 211.39 280.72 175 218 190 153 218 269 3 3 3 3 3 3 42415 3957 748 3927 6372;6373 8350;8351;8352 8350 3 EFDLTKEEDLAALR Unmodified 1648.8308 0.83081599 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 1 4 0 1 62.301 62.301 3 2.3749E-07 19131 TMT1-3 111.12 81.775 191.79 271.39 176.94 231.44 209.67 346.86 181 270 189 225 222 331 1 1 1 1 1 1 25210 3958 220 3928 6374 8353 8353 1 EFDPTITDASLSLPSR Unmodified 1747.8628 0.8628444 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 4.5 0.5 1 1 66.76 66.76 3 8.646E-16 20548 TMT1-4 130.47 96.036 162.02 210.53 182.56 190.62 211.75 218.88 153 211 189 188 218 211 3 3 3 3 3 3 37173 3959 1597 3929 6375;6376 8354;8355;8356 8356 3 EFEDFLK Unmodified 926.43855 0.43854874 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 5 0 1 64.433 64.433 2 0.037495 19621 TMT1-4 87.323 28.117 246.59 231.17 197.9 197.39 268.3 299.35 232 236 205 196 275 288 1 1 1 1 1 1 41384 3960 2662 3930 6377 8357 8357 1 EFEPLLNWMK Unmodified 1305.6427 0.64274463 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 7.33 0.471 2 1 79.691 79.691 2;3 0.00013511 25152 TMT1-6 135.71 123.86 177.24 178.74 177.08 184.78 191.1 188.56 167 182 182 182 197 182 4 4 4 4 4 4 36235 3961 708 3931 6378;6379;6380 8358;8359;8360;8361;8362 8360 5 EFESAIVEAAR Unmodified 1220.6037 0.60371659 1813 Q15020;Q15020-4;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 0 3 0 1 55.525 55.525 2 2.0643E-05 17429 TMT1-2 119.53 79.611 37.741 73.679 86.648 64.544 71.083 67.262 36 73 87 65 73 65 1 1 1 1 1 1 8112 3962 1813 3932 6381 8363 8363 1 EFESVLVDAFSHVAR Unmodified 1704.8471 0.84713476 2712 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 0 6 0 1 76.17 76.17 3 0.0039874 24413 TMT1-5 59.513 47.598 61.33 87.127 78.124 65.087 69.189 121.68 58 87 80 65 73 116 2 2 2 2 2 2 11737 3963 2712 3933 6382 8364;8365 8364 2 EFETPEK Unmodified 878.40216 0.40216323 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 4 0 1 42.893 42.893 2 0.0011734 11468 TMT1-3 98.299 46.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3964 2977 3934 6383 8366 8366 1 EFFPIADGDQQSPIEIK Unmodified 1932.9469 0.94690838 2167 Q8N1Q1 CA13 Carbonic anhydrase 13 yes yes 0 0 0 0 0 5 0 1 74.055 74.055 4 4.1131E-05 23432 TMT1-4 78.285 55.483 54.063 73.209 48.922 35.799 33.665 68.329 51 73 51 36 36 65 1 1 1 1 1 1 7246.9 3965 2167 3935 6384 8367 8367 1 EFFPNHQWVK Unmodified 1330.6459 0.64585618 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 8 0 1 53.183 53.183 3 0.0017589 14872 TMT1-7 85.622 53.779 185.43 277.62 339.14 274.53 251.8 280.63 176 278 341 274 262 270 1 1 1 1 1 1 24750 3966 771 3936 6385 8368 8368 1 EFGAGPLFNQILPLLMSPTLEDQER Unmodified 2814.4262 0.4262165 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 8 0 1 100.71 100.71 3 9.9525E-06 32863 TMT1-7 64.152 52.735 4.2664 0 4.3065 0 7.1826 4.059 4 0 4 0 7 4 1 0 1 0 1 1 1403.7 3967 286 3937 6386 8369 8369 1 EFGFSGLNVK Unmodified 1096.5553 0.55530983 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 7 0 1 62.899 62.899 3 0.003963 18636 TMT1-6 75.652 38.308 77.538 93.894 53.434 74.031 136.83 119.75 73 94 58 73 138 116 1 1 1 1 1 1 7183.4 3968 1744 3938 6387 8370 8370 1 EFGGGHIKDELFGTVK Unmodified 1732.8784 0.87843489 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 1 7 0 1 58.47 58.47 4 1.9113E-05 16815 TMT1-6 86.772 64.297 61.186 86.725 102.71 48.014 85.439 97.766 58 87 102 51 87 94 1 1 1 1 1 1 15935 3969 2013 3939 6388 8371 8371 1 EFGIADPDEIMWFK Unmodified 1696.7807 0.78069468 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 5 0 1 84.715 84.715 3 0.005165 27619 TMT1-4 59.871 42.792 23.206 37.207 35.644 21.527 20.982 30.315 22 37 36 22 22 29 1 1 1 1 1 1 2061.1 3970 1824 3940 6389 8372 8372 1 EFGNTLEDK Unmodified 1051.4822 0.48220447 434 P02654 APOC1 Apolipoprotein C-I;Truncated apolipoprotein C-I yes yes 0 0 0 0 0 4 0 1 48.357 48.357 2 0.00031959 13629 TMT1-3 99.568 53.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3971 434 3941 6390 8373 8373 1 EFGSLPTTPSEQR Unmodified 1447.6943 0.69432251 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 4.5 0.5 1 1 48.741 48.741 2;3 8.5534E-09 13743 TMT1-3 126.34 115.69 176.76 278.86 172.49 128.57 172.26 142.19 167 276 181 130 175 138 2 2 2 2 2 2 31154 3972 147 3942 6391;6392 8374;8375 8374 2 EFGTNIK Unmodified 807.41267 0.41266834 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 0 6 0 1 44.997 44.997 2 0.010017 12229 TMT1-5 109.86 41.441 445.99 730.56 707.45 426.83 633.8 740.91 423 726 714 440 649 712 2 2 2 2 2 2 140510 3973 708 3943 6393 8376;8377 8377 2 EFGVSPDK Unmodified 877.41815 0.41814765 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 5 0 1 45.355 45.355 2 0.0057996 12170 TMT1-4 73.248 28.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3974 903 3944 6394 8378 8378 1 EFHLNESGDPSSK Unmodified 1445.6423 0.64228694 1548 Q01105-3;Q01105-4;Q01105-2;Q01105;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 0 4 0 1 41.658 41.658 3 6.3154E-11 10948 TMT1-3 133.48 99.791 276 498.43 258.1 231.64 348.26 422.86 261 490 277 232 357 406 1 1 1 1 1 1 90570 3975 1548 3945 6395 8379 8379 1 EFHTTGLAWSK Unmodified 1275.6248 0.62478638 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 6.25 3.11 1 1 1 1 50.614 50.614 3 4.361E-05 11865 TMT1-8 99.5 72.529 987.56 1224.6 1239 1102.2 1335.7 1297.6 933 1233 1263 1099 1368 1253 5 5 5 5 5 5 219550 3976 1555;1556 3946 6396;6397;6398;6399 8380;8381;8382;8383;8384 8383 5 EFIGSFLEMFGPEGALK Unmodified 1870.9175 0.91752251 1183 P49585 PCYT1A Choline-phosphate cytidylyltransferase A yes yes 0 0 0 0 0 8 0 1 95.032 95.032 3 1.29E-05 30953 TMT1-7 83.418 64.094 15.89 14.518 22.193 14.81 13.962 30.516 15 15 22 15 15 29 1 1 1 1 1 1 1339.6 3977 1183 3947 6400 8385 8385 1 EFIHILYFR Unmodified 1236.6655 0.66552898 2793 Q9NZ32 ACTR10 Actin-related protein 10 yes yes 0 0 0 0 0 9 0 1 64.899 64.899 3 0.0061852 17636 TMT1-8 65.305 31.345 38.121 50.991 42.026 52.309 49.381 45.495 36 51 44 51 51 44 1 1 1 1 1 1 6943.8 3978 2793 3948 6401 8386 8386 1 EFIIALSVTSR Unmodified 1234.6921 0.69213767 1051;1394 P37235;P84074;P61601 HPCAL1;HPCA;NCALD Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta no no 0 0 0 0 0 9 0 1 69.349 69.349 2 0.0021963 19389 TMT1-8 85.355 28.074 38.245 35.146 34.628 45.409 32.93 76.878 36 36 36 44 36 73 1 1 1 1 1 1 4544.6 3979 1051;1394 3949 6402 8387 8387 1 EFLDFAR Unmodified 896.43922 0.43921744 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 5 0 1 60.316 60.316 2 0.0019013 18074 TMT1-4 144.83 68.242 130.3 166.54 141.09 115.73 140.93 158.01 123 167 145 116 145 152 1 1 1 1 1 1 26033 3980 2707 3950 6403 8388 8388 1 EFLDLLGDTITLQDFK Unmodified 1866.9615 0.96149581 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 96.653 96.653 3 4.7413E-09 31484 TMT1-6 113.59 90.448 76.094 125.32 89.115 129.59 91.684 122.11 72 124 95 125 95 117 4 4 4 4 3 4 16670 3981 2004 3951 6404;6405 8389;8390;8391;8392 8392 4 EFLGTYNK Unmodified 970.476 0.47599688 3027 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 0 0 0 0 0 6 0 1 51.08 51.08 2 0.0059572 14598 TMT1-5 111.74 86.18 107.98 168.67 103.76 78.973 121.42 105.27 102 167 109 80 123 102 1 1 1 1 1 1 10775 3982 3027 3952 6406 8393 8393 1 EFLHAQEEVKR Unmodified 1384.7099 0.709913 1118 P43686 PSMC4 26S protease regulatory subunit 6B yes yes 0 0 0 0 1 5 0 1 37.56 37.56 4 0.005482 9064 TMT1-4 65.842 43.61 308.31 385.39 334.44 293.83 345.03 433.61 291 387 344 293 357 416 1 1 1 1 1 1 21797 3983 1118 3953 6407 8394 8394 1 EFLLIFR Unmodified 936.54329 0.54328858 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 9 0 1 75.089 75.089 2 0.013451 21703 TMT1-8 108.98 73.734 341.13 645.41 368.54 364.61 425.11 504.88 323 634 393 361 439 485 1 1 1 1 1 1 109350 3984 2376 3954 6408 8395 8395 1 EFLQNLDALHDHLATIYPGMR Unmodified 2453.2162 0.21616415 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 8 0 1 72.093 72.093 4 0.0088964 22309 TMT1-7 40.197 38.837 38.149 43.515 43.57 27.711 73.839 36.269 36 44 44 29 73 36 1 1 1 1 1 1 3959.8 3985 1565 3955 6409 8396 8396 1 EFLVLGEAPS Unmodified 1060.5441 0.54407645 2804 Q9NZQ3-3;Q9NZQ3 NCKIPSD NCK-interacting protein with SH3 domain yes no 0 0 0 0 0 4.5 0.5 1 1 75.082 75.082 2 0.0088023 24122 TMT1-3 86.011 58.896 38.892 66.267 79.848 57.026 85.574 81.772 37 66 80 58 87 79 2 2 2 2 2 2 14365 3986 2804 3956 6410;6411 8397;8398 8397 2 EFMNYFHALEIGYR Unmodified 1788.8294 0.8293762 1776 Q14432 PDE3A cGMP-inhibited 3',5'-cyclic phosphodiesterase A yes yes 0 0 0 0 0 8 0 1 72.161 72.161 3 0.0076705 22360 TMT1-7 55.186 45.129 23.213 36.148 35.364 29.221 19.565 61.27 22 36 36 29 22 58 1 1 1 1 1 1 5575.1 3987 1776 3957 6412 8399 8399 1 EFNAETFTFHADICTLSEK Unmodified 2259.0154 0.015398653 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 5.5 0.5 2 2 67.672 67.672 3;4 2.5704E-23 21125 TMT1-5 132.79 119.06 490.9 691.25 586.58 492.01 689.76 668.95 464 690 603 494 703 646 8 8 8 8 8 8 76003 + 3988 28 3958 6413;6414;6415;6416 8400;8401;8402;8403;8404;8405;8406;8407 8404 8 EFNAETFTFHADICTLSEKER Unmodified 2544.1591 0.15910278 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 6 0 1 61.897 61.897 4 1.4904E-11 18830 TMT1-5 103.95 97.148 122.7 198.12 128.45 187.76 128.34 214.87 116 196 138 181 138 205 1 1 1 1 1 1 16557 + 3989 28 3959 6417 8408 8408 1 EFNAEVHR Unmodified 1000.4726 0.47264284 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 3 0.816 1 1 1 31.039 31.039 3 0.00041089 7750 TMT1-2 138.4 118.07 200.4 246.04 194.7 206.02 226.47 196.08 189 247 203 203 232 190 4 4 4 4 4 4 46916 3990 1132 3960 6418;6419;6420 8409;8410;8411;8412;8413 8412 5 EFNAEVHRK Unmodified 1128.5676 0.56760585 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 1 5.5 0.5 1 1 29.951 29.951 4 0.00035405 6033 TMT1-4 106.88 80.278 316.57 376.17 216.33 236.25 293.87 386.03 298 377 232 233 304 370 3 3 3 3 3 3 16363 3991 1132 3961 6421;6422 8414;8415;8416 8414 3 EFNEDGALAVLQQFK Unmodified 1707.8468 0.84680041 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 6.5 0.5 1 1 80.109 80.109 3 1.1985E-11 25380 TMT1-6 128.73 91.882 146.35 157.75 156.76 113.93 187.04 157.76 138 160 159 116 189 153 2 2 2 2 2 2 30516 3992 226;227 3962 6423;6424 8417;8418 8418 2 EFNEEGALSVLQQFK Unmodified 1737.8574 0.85736509 170 O43390;O43390-3;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 6 0 1 78.82 78.82 3 6.1959E-11 25483 TMT1-5 125.28 97.63 30.558 51.361 50.381 35.131 64.572 52.523 29 51 51 36 65 51 1 1 1 1 1 1 9384.3 3993 170 3963 6425 8419 8419 1 EFNKYDTDGSK Unmodified 1302.5728 0.57281039 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 5.33 0.471 2 1 41.123 41.123 3 0.0013219 10492 TMT1-5 89.43 53.753 1111.9 1825.1 1285.3 1133.8 1136.1 1739.3 1052 1806 1341 1127 1193 1662 4 4 4 4 4 4 131200 3994 1379 3964 6426;6427;6428 8420;8421;8422;8423 8423 4 EFNLDDNIPEDDSGVPTPEDAGK Unmodified 2473.0769 0.076872515 320 O75995 SASH3 SAM and SH3 domain-containing protein 3 yes yes 0 0 0 0 0 2.5 0.5 1 1 65.957 65.957 4 0.0014581 21514 TMT1-2 47.564 39.572 69.122 56.097 57.087 43.882 42.952 30.754 65 58 58 44 44 30 2 2 2 2 2 2 9599.6 3995 320 3965 6429;6430 8424;8425 8425 2 EFNPLVIVGLSK Unmodified 1314.7547 0.75473792 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 9 0 1 81.531 81.531 3 0.00055284 24204 TMT1-8 78.486 27.681 215.71 182.14 200.17 167.56 161.8 364.22 203 188 203 167 174 346 2 2 2 2 2 2 22682 3996 666 3966 6431 8426;8427 8427 2 EFPDVLECTVSHAVEK Unmodified 1858.8771 0.87711426 1156 P48507 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 0 0 0 0 0 5 0 1 66.749 66.749 3 2.1084E-06 20509 TMT1-4 91.657 85.997 54.081 80.813 39.492 67.224 77.996 75.592 51 80 44 65 80 73 1 1 1 1 1 1 16341 3997 1156 3967 6432 8428 8428 1 EFPGFLENQK Unmodified 1207.5873 0.58733824 1362 P60903 S100A10 Protein S100-A10 yes yes 0 0 0 0 0 6 0 1 61.14 61.14 3 0.026911 18505 TMT1-5 51.872 2.5048 68.802 94.061 78.703 41.912 79.16 75.559 65 94 80 44 80 73 1 1 1 1 1 1 9631.7 3998 1362 3968 6433 8429 8429 1 EFPGFLENQKDPLAVDK Unmodified 1945.9785 0.97854286 1362 P60903 S100A10 Protein S100-A10 yes yes 0 0 0 0 1 6.33 0.471 2 1 66.564 66.564 3;4 1.683E-13 20732 TMT1-5 119.85 97.047 424.56 622.76 432.49 407.36 564.92 640.54 401 619 453 406 579 616 4 4 4 4 4 4 153370 3999 1362 3969 6434;6435;6436 8430;8431;8432;8433 8431 4 EFPTVPLVK Unmodified 1028.5906 0.59063271 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 7 0 1 63.914 63.914 2 0.0004924 18982 TMT1-6 136.27 94.159 143.97 410.16 342.72 214.76 164.03 449.44 138 400 349 218 181 426 2 2 2 2 2 2 61832 4000 1910 3970 6437 8434;8435 8434 2 EFQDAGEQVVSSPADVAEK Unmodified 2004.9276 0.9276295 980 P31937 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes yes 0 0 0 0 0 3 0 1 57.107 57.107 3 0.00052117 18108 TMT1-2 58.366 49.658 38.363 27.919 20.95 22.132 35.356 37.367 36 29 22 22 36 36 1 1 1 1 1 1 9840.2 4001 980 3971 6438 8436 8436 1 EFQLGESVK Unmodified 1035.5237 0.52367535 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 5 0 1 52.816 52.816 2 0.00098396 15135 TMT1-4 125.97 63.97 153.69 164.34 178.76 144.82 160.35 223.55 145 167 181 145 167 214 1 1 1 1 1 1 23785 4002 1773 3972 6439 8437 8437 1 EFQNNPNPR Unmodified 1114.5156 0.51557028 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 3 0 1 30.288 30.288 2 0.010006 7460 TMT1-2 88.921 64.289 30.802 28.296 28.883 14.411 13.98 30.515 29 29 29 15 15 29 1 1 1 1 1 1 2853.5 4003 647 3973 6440 8438 8438 1 EFQSLLK Unmodified 863.47527 0.4752686 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 6.5 0.5 1 1 57.785 57.785 2 0.0057425 16640 TMT1-6 133.55 33.097 859.73 1537.7 1358.4 1003.6 1260.8 1752.8 816 1521 1386 1014 1307 1678 2 2 2 2 2 2 354550 4004 1684 3974 6441;6442 8439;8440;8441 8441 3 EFSEENVLFWLACEDFK Unmodified 2161.9667 0.96665755 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 0 6 0 2 92.602 92.602 3 1.0737E-10 30482 TMT1-5 91.457 70.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4005 188 3975 6443;6444 8442;8443 8442 2 EFSEENVLFWLACEDFKK Unmodified 2290.0616 0.061620564 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 1 7 0 1 83.752 83.752 4 4.8301E-06 26758 TMT1-6 83.894 80.841 54.016 64.443 64.267 43.192 56.873 52.743 51 65 65 44 58 51 1 1 1 1 1 1 7338.4 4006 188 3976 6445 8444 8444 1 EFSGYVESGLK Unmodified 1214.5819 0.58191851 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 5 0 1 56.313 56.313 2 1.5364E-16 16486 TMT1-4 182.64 117.41 68.845 102.81 64.146 89.7 83.375 102.09 65 102 69 87 87 98 1 1 1 1 1 1 14577 4007 804 3977 6446 8445 8445 1 EFSHIAFLTIK Unmodified 1304.7129 0.71287311 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 8.5 0.5 1 1 64.028 64.028 3 0.00019293 19081 TMT1-7 100.55 87.126 291.24 750.03 549.28 398.33 326.17 538.62 278 732 567 400 347 514 3 3 3 3 3 3 77420 4008 634 3978 6447;6448 8446;8447;8448 8446 3 EFSHLGK Unmodified 816.413 0.41300269 447 P02774-3;P02774 GC Vitamin D-binding protein yes no 0 0 0 0 0 6 0 1 38.26 38.26 3 0.0086098 9481 TMT1-5 84.244 47.15 92.138 115.44 105.96 102.93 119.25 136.24 87 116 109 102 123 131 1 1 1 1 1 1 6108 4009 447 3979 6449 8449 8449 1 EFSIDVGYER Unmodified 1213.5615 0.56151742 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 4 0.816 1 1 1 56.893 56.893 2 1.2205E-14 18105 TMT1-2 190.02 177.4 499.75 652.56 573.89 415.02 581.01 679.52 472 654 586 421 596 653 5 5 5 5 5 5 180620 4010 1379 3980 6450;6451;6452 8450;8451;8452;8453;8454 8451 5 EFSITDVVPYPISLR Unmodified 1734.9192 0.91923707 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 7 0 1 81.31 81.31 3 5.0753E-08 25791 TMT1-6 112.62 108.4 30.652 51.622 34.428 28.552 58.095 36.718 29 51 36 29 58 36 1 1 1 1 1 1 21791 4011 1009 3981 6453 8455 8455 1 EFSIYMTK Unmodified 1017.4841 0.48411873 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 7 0 1 59.987 59.987 3 0.019389 17486 TMT1-6 63.419 39.583 46.359 95.852 62.093 50.561 78.762 75.57 44 94 65 51 80 73 1 1 1 1 1 1 5361.2 4012 396 3982 6454 8456 8456 1 EFSPFGTITSAK Unmodified 1283.6398 0.63976774 662 P11940-2;P11940 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 63.399 63.399 3 0.00016462 18840 TMT1-6 94.122 57.788 229.67 289.33 287.8 167.5 293.96 262.38 217 291 290 174 297 254 2 2 2 2 2 2 26880 4013 662 3983 6455;6456 8457;8458 8457 2 EFSPSFINFVNLCLTK Unmodified 1914.955 0.95497065 1123 P45985;P45985-2 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 0 0 0 0 0 9 0 1 86.298 86.298 3 3.1109E-05 26012 TMT1-8 71.354 39.715 30.717 28.059 43.429 52.541 32.602 76.888 29 29 44 51 36 73 1 1 1 1 1 1 3944.9 4014 1123 3984 6457 8459 8459 1 EFTAQNLGK Unmodified 1006.5084 0.50835964 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 6 0 1 47.703 47.703 3 0.011441 13254 TMT1-5 64.841 37.869 161.4 171.93 138.87 154.68 169.21 165.73 152 174 145 152 174 160 1 1 1 1 1 1 8663.3 4015 145 3985 6458 8460 8460 1 EFTEAVEAK Unmodified 1022.492 0.49204087 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 3 0.816 1 1 1 48.758 48.758 2 0.001252 14727 TMT1-2 122.13 94.514 346.1 544.45 341.28 383.2 453.01 459.31 327 539 363 377 465 443 3 3 3 3 3 3 55143 4016 1012 3986 6459;6460;6461 8461;8462;8463 8462 3 EFTKLEEVLTNK Unmodified 1449.7715 0.7715102 1506 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 1 6.5 0.5 1 1 66.884 66.884 3 2.0632E-07 20804 TMT1-5 106.58 78.929 312.09 563.19 630.44 453.01 473.84 612.22 297 559 634 457 493 587 1 1 1 1 1 1 57439 4017 1506 3987 6462;6463 8464;8465 8464 2 EFTLEFSR Unmodified 1027.4975 0.4974606 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 5 0 1 58.679 58.679 2 3.601E-19 17378 TMT1-4 203.07 147.05 436.95 508.46 791.25 546.02 539.83 667.9 414 518 784 552 562 641 1 1 1 1 1 1 130130 4018 2344;748 3988 6464 8466 8466 1 EFTPPVQAAYQK Unmodified 1377.6929 0.69286595 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 4.8 1.94 1 1 3 53.853 53.853 2;3;4 5.2014E-11 15514 TMT1-5 159.94 137.71 9444.1 9357.8 7293.3 6376 2371.5 4592.9 8886 9508 7566 6272 2698 4372 9 9 9 9 9 9 2559800 4019 1497 3989 6465;6466;6467;6468;6469 8467;8468;8469;8470;8471;8472;8473;8474;8475 8471 9 EFTPQMQAAYQK Unmodified 1440.6708 0.6707503 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 6 0 2 51.802 51.802 2;3 4.4197E-07 14887 TMT1-5 122.98 104.2 312.99 373.21 280.33 237.1 161.85 300.26 295 375 291 235 175 286 2 2 2 2 2 2 40135 4020 428 3990 6470;6471 8476;8477 8477 2 EFVAVTGAEEDR Unmodified 1321.615 0.61500956 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 2 0 2 48.474 48.474 2;3 6.0141E-07 14314 TMT1-1 120.32 87.684 68.506 109.43 115.49 69.93 100.1 98.414 65 109 116 72 102 95 2 2 2 2 2 2 12709 4021 2934 3991 6472;6473 8478;8479 8478 2 EFVEAVLELR Unmodified 1203.6499 0.6499385 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 5 0 1 75.113 75.113 2 0.00040444 23806 TMT1-4 119.16 70.368 284.18 348.66 273.56 231.11 385.8 335.44 268 350 283 233 390 325 2 2 2 2 2 2 48396 4022 268 3992 6474 8480;8481 8480 2 EFVISDR Unmodified 864.43413 0.43413207 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 4 0 1 45.804 45.804 2 1.4514E-12 12648 TMT1-3 187.63 114.31 1881.8 2679 2286.1 1913.7 2642.4 2458.5 1779 2673 2349 1921 2691 2377 2 2 2 2 2 2 476180 4023 1747 3993 6475 8482;8483 8483 2 EFVISDRK Unmodified 992.5291 0.52909508 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 1 6 0 1 42.286 42.286 3 0.0027147 11023 TMT1-5 101.54 61.439 1068.6 1387.2 1178.7 819.43 931.12 1731.3 1009 1390 1205 830 983 1649 2 2 2 2 2 2 174290 4024 1747 3994 6476 8484;8485 8484 2 EFVLLPAASELAHVK Unmodified 1622.9032 0.90319307 2587 Q9BZL6-3;Q9BZL6 PRKD2 Serine/threonine-protein kinase D2 yes no 0 0 0 0 0 7 0 1 69.428 69.428 3 0.026372 21189 TMT1-6 44.691 22.493 77.186 140.41 73.063 105.15 105.55 105.72 73 138 80 102 109 102 1 1 1 1 1 1 5833 4025 2587 3995 6477 8486 8486 1 EFYILWTK Unmodified 1098.575 0.57498264 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 9 0 1 74.473 74.473 2 0.0071327 21404 TMT1-8 117.04 77.494 92.096 131.51 99.515 56.001 77.742 97.986 87 131 102 58 80 94 1 1 1 1 1 1 14486 4026 761 3996 6478 8487 8487 1 EGAAHAFAQYNLDQFTPVK Unmodified 2106.0171 0.017053633 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 0 7 0 1 61.428 61.428 4 3.1299E-13 18039 TMT1-6 106.16 89.077 145.88 171.57 223.19 110.1 179.84 189.95 138 174 221 116 183 183 1 1 1 1 1 1 34728 4027 1143 3997 6479 8488 8488 1 EGAAHAFAQYNMDQFTPVK Unmodified 2123.9735 0.97347426 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 7 0 1 58.537 58.537 4 4.1188E-05 16901 TMT1-6 67.995 52.403 99.607 122.36 107.29 62.914 92.339 90.107 94 123 109 65 94 87 1 1 1 1 1 1 10689 4028 1277 3998 6480 8489 8489 1 EGAIIVDPAR Unmodified 1039.5662 0.56620887 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 3 0 1 46.132 46.132 2 0.0089431 13731 TMT1-2 85.807 41.993 37.917 65.535 63.929 51.141 42.105 45.703 36 65 65 51 44 44 1 1 1 1 1 1 7974.4 4029 2642 3999 6481 8490 8490 1 EGCEAIVDTGTSLMVGPVDEVR Unmodified 2333.0879 0.087911669 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 3 0 1 69.83 69.83 3 0.0035331 23057 TMT1-2 43.768 35.059 15.936 14.647 14.249 22.936 13.845 23.057 15 15 15 22 15 22 1 1 1 1 1 1 10342 4030 533 4000 6482 8491 8491 1 EGCGDDNVCNSNLK Unmodified 1580.6195 0.61951936 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 2.5 0.5 1 1 38.781 38.781 3 2.0308E-12 10595 TMT1-1 112.95 100.79 107.81 136.92 158.17 138.89 133.6 127.31 102 138 160 138 138 123 1 1 1 1 1 1 14512 4031 856 4001 6483;6484 8492;8493 8492 2 EGCTEVSLLR Unmodified 1162.5652 0.56522259 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 3 0 1 46.876 46.876 2 2.6478E-09 14000 TMT1-2 170.5 116.73 122.93 167.45 116.46 133.86 126.5 127.51 116 167 123 131 131 123 1 1 1 1 1 1 30998 4032 1915 4002 6485 8494 8494 1 EGDIVKR Unmodified 815.45012 0.45011648 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 4 0 1 31.061 31.061 3 0.012814 6782 TMT1-3 85.813 32.133 1722.6 2406.3 1674.7 1573.1 1770.1 2547.3 1626 2397 1754 1561 1845 2437 1 1 1 1 1 1 91145 4033 888 4003 6486 8495 8495 1 EGDIVTLINK Unmodified 1100.6077 0.60773933 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 5 0 1 62.162 62.162 2 4.1497E-06 18766 TMT1-4 124.74 50.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4034 2369 4004 6487 8496 8496 1 EGDKHTLSK Unmodified 1013.5142 0.5141733 510 P06703 S100A6 Protein S100-A6 yes yes 0 0 0 0 1 5.33 0.471 2 1 29.64 29.64 3;4 0.0034607 6102 TMT1-5 82.029 65.775 1263 2604.4 2113.7 1583.7 2254.5 1922.7 1201 2561 2169 1603 2288 1864 3 3 3 3 3 3 227030 4035 510 4005 6488;6489;6490 8497;8498;8499 8499 3 EGDLIAAQAR Unmodified 1042.5407 0.5407224 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 3 0 1 40.966 40.966 2 0.001441 11710 TMT1-2 102.55 68.293 61.37 118.54 44.774 67.032 71.482 52.326 58 116 51 65 73 51 1 1 1 1 1 1 10860 4036 429 4006 6491 8500 8500 1 EGDLLFTVAK Unmodified 1091.5863 0.58627561 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 6 0 1 65.124 65.124 3 0.0053422 20116 TMT1-5 72.006 15.443 85.158 71.021 54.384 82.637 83.041 121.29 80 73 58 80 87 116 1 1 1 1 1 1 6781.7 4037 1695 4007 6492 8501 8501 1 EGDLLTK Unmodified 774.41233 0.41233399 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 4 0 1 46.725 46.725 2 0.01674 12970 TMT1-3 100.15 9.0841 486.9 608.2 606.47 449.39 510.08 749.77 460 612 615 453 532 717 1 1 1 1 1 1 45109 4038 2079;2399 4008 6493 8502 8502 1 EGDLPPLWWYIVTRPR Unmodified 1997.0523 0.052316927 3061 Q9Y6M9 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes yes 0 0 0 0 1 9 0 1 78.693 78.693 3 9.6112E-06 23035 TMT1-8 72.315 44.454 54.29 33.907 44.034 28.408 35.324 29.906 51 36 44 29 36 29 1 1 1 1 1 1 5263.5 4039 3061 4009 6494 8503 8503 1 EGDPAIYAER Unmodified 1119.5197 0.51965261 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 2 0 2 39.921 39.921 2 0.0004616 10983 TMT1-1 85.744 70.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4040 2857 4010 6495;6496 8504;8505 8505 2 EGDPAPYKNPER Unmodified 1371.6419 0.64189301 2690 Q9HCN6-2;Q9HCN6;Q9HCN6-3 GP6 Platelet glycoprotein VI yes no 0 0 0 0 1 3.5 0.5 1 1 33.506 33.506 3 0.006048 7670 TMT1-3 67.93 44.254 732.09 591.18 890.14 610.28 761.55 948.33 690 616 884 620 786 910 2 2 2 2 2 2 67121 4041 2690 4011 6497;6498 8506;8507 8507 2 EGDQLVVGPTDDGCFLELR Unmodified 2118.9892 0.9891839 2563 Q9BX10-2;Q9BX10-4;Q9BX10;Q9BX10-3 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 2 0 1 71.591 71.591 3 0.00032067 23206 TMT1-1 61.942 42.906 0 31.831 5.3503 7.0476 15.125 7.0304 0 30 7 7 15 7 0 1 1 1 1 1 1654.1 4042 2563 4012 6499 8508 8508 1 EGDVLTLLESER Unmodified 1359.6882 0.6881745 1452 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 0 0 3 0.816 1 1 1 69.337 69.337 2 4.2106E-25 22423 TMT1-1 197.94 140.67 231.85 366.99 215.79 270.51 217.46 372.22 219 363 232 263 232 355 5 5 5 5 5 5 74097 4043 1452 4013 6500;6501;6502 8509;8510;8511;8512;8513 8509 5 EGDYVLFHHEGGVDVGDVDAK Unmodified 2257.0287 0.028740531 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 3 0 1 54.158 54.158 4 2.336E-10 16955 TMT1-2 94.057 78.967 177.07 232.23 160.45 121.53 178.04 196.39 167 232 167 123 182 189 2 2 2 2 2 2 32187 4044 1283 4014 6503 8514;8515 8515 2 EGEEAGPGDPLLEAVPK Unmodified 1706.8363 0.8362953 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 2.67 0.471 1 2 62.742 62.742 2;3;4 5.3799E-09 20245 TMT1-2 105.17 80.316 185.62 200.26 192.4 175.11 191.54 188.55 175 203 197 174 197 182 4 4 4 4 4 4 40543 4045 1891 4015 6504;6505;6506 8516;8517;8518;8519 8518 4 EGEFVAQFK Unmodified 1053.5131 0.51311067 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 5 0 1 56.084 56.084 3 0.0040478 16418 TMT1-4 77.677 41.282 107.45 244.92 127.14 155.69 152.67 219.5 102 239 138 152 160 210 1 1 1 1 1 1 15063 4046 2943 4016 6507 8520 8520 1 EGEIAMLGGVGEENEK Unmodified 1660.7614 0.7614158 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 3 0 1 59.118 59.118 3 4.2307E-35 18854 TMT1-2 164.66 143.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4047 2135 4017 6508 8521 8521 1 EGEIIHLISK Unmodified 1137.6394 0.63937381 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 6 0 1 56.615 56.615 3 0.0021108 16762 TMT1-5 83 49.775 84.672 84.778 124.44 70.208 115.04 89.459 80 87 123 73 116 87 1 1 1 1 1 1 7547.3 4048 3029 4018 6509 8522 8522 1 EGELSVFFR Unmodified 1082.5397 0.53965977 2182 Q8N5J2-4;Q8N5J2-2;Q8N5J2;Q8N5J2-3 FAM63A Protein FAM63A yes no 0 0 0 0 0 6 0 1 65.034 65.034 2 0.044054 20071 TMT1-5 68.371 25.344 77.453 102.29 60.51 73.895 121.65 105.26 73 102 65 73 123 102 1 1 1 1 1 1 15050 4049 2182 4019 6510 8523 8523 1 EGELTVAQGR Unmodified 1058.5356 0.53563702 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2 0 1 37.004 37.004 2 0.0025454 9743 TMT1-1 99.013 28.157 76.895 170.9 96.184 79.449 120.07 143.68 73 167 102 80 123 138 1 1 1 1 1 1 31335 4050 1577 4020 6511 8524 8524 1 EGEQNFSAEEFSDISEMR Unmodified 2103.8691 0.86912835 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 2 0 1 63.363 63.363 3 0.00016575 20193 TMT1-1 70.114 60.193 7.1637 37.375 26.704 53.785 19.499 30.358 7 36 29 51 22 29 1 1 1 1 1 1 6266.8 4051 1314 4021 6512 8525 8525 1 EGEQVEFSFPLAFTVEK Unmodified 1955.9517 0.95165941 417 P01730 CD4 T-cell surface glycoprotein CD4 yes yes 0 0 0 0 0 6 0 1 81.999 81.999 3 0.018136 26717 TMT1-5 44.089 27.404 23.261 44.913 19.998 22.322 28.275 30.107 22 44 22 22 29 29 1 1 1 1 1 1 3086.5 4052 417 4022 6513 8526 8526 1 EGESHAENETK Unmodified 1229.516 0.51602379 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 2 0 1 22.855 22.855 3 9.191E-05 4257 TMT1-1 78.342 64.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4053 372 4023 6514 8527 8527 1 EGESLEDLMK Unmodified 1149.5224 0.52235473 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 2.67 0.471 1 2 60.679 60.679 2;3 8.9939E-05 19392 TMT1-2 116.52 41.598 192.13 378.29 209.27 236.02 328.5 261.39 182 371 225 233 333 254 4 4 4 4 4 4 65722 4054 690 4024 6515;6516;6517 8528;8529;8530;8531 8529 4 EGETIIELK Unmodified 1030.5546 0.55464113 1625 Q08722-3;Q08722-4;Q08722;Q08722-2 CD47 Leukocyte surface antigen CD47 yes no 0 0 0 0 0 3.5 0.5 1 1 56.661 56.661 2 0.00029115 16800 TMT1-3 141.88 63.382 404.18 934.48 707.71 564.1 715.31 925.13 385 915 731 567 739 887 3 3 3 3 3 3 110440 4055 1625 4025 6518;6519 8532;8533;8534 8533 3 EGETYFDVVAVVDPVTR Unmodified 1894.9313 0.93125832 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 3.5 0.5 1 1 75.894 75.894 3 9.3834E-10 24451 TMT1-3 106.36 101.81 61.703 65.499 33.782 45.153 49.197 60.424 58 66 37 44 51 58 2 2 2 2 2 2 8185.2 4056 2789 4026 6520;6521 8535;8536;8537 8537 3 EGFGHLSPTGTTEFWLGNEK Unmodified 2206.0331 0.033097627 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5.78 2.66 2 2 2 3 64.806 64.806 3;4;5 3.282E-40 19375 TMT1-7 177.67 147.51 1932.9 2483.8 1978.2 1650.8 2019.3 2925 1824 2488 2043 1653 2099 2798 13 13 13 13 13 13 917810 4057 439 4027 6522;6523;6524;6525;6526;6527;6528;6529;6530 8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550 8550 13 EGFHFEETLTGFK Unmodified 1540.7198 0.71980898 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 0 6 0 1 62.295 62.295 3 0.00043746 18951 TMT1-5 79.466 66.33 100.49 184.37 86.23 112.05 103.62 152.68 95 181 95 109 109 146 2 2 2 2 2 2 31040 4058 2407 4028 6531 8551;8552 8551 2 EGFIPSNYVAK Unmodified 1223.6186 0.61863837 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 7 0 1 57.197 57.197 3 0.021028 16372 TMT1-6 52.837 27.401 115.5 152 116.01 165.49 131.57 150.82 109 152 123 160 138 145 1 1 1 1 1 1 12353 4059 550 4029 6532 8553 8553 1 EGFVEYTEQVVK Unmodified 1426.698 0.6980109 65 O00410;O00410-3;O00410-2;O60518 IPO5;RANBP6 Importin-5;Ran-binding protein 6 yes no 0 0 0 0 0 4 0 1 62.604 62.604 3 6.7387E-05 19231 TMT1-3 100.93 79.374 85.001 93.247 62.06 50.434 85.584 90.3 80 94 65 51 87 87 1 1 1 1 1 1 8809.2 4060 65 4030 6533 8554 8554 1 EGGFLLLHTLLR Unmodified 1367.7925 0.79252041 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 69.951 69.951 3 0.0036005 19611 TMT1-8 60.157 39.204 23.103 59.586 33.961 29.162 27.154 53.591 22 58 36 29 29 51 1 1 1 1 1 1 4574.7 4061 1176 4031 6534 8555 8555 1 EGGGNNLYGEEMVQALK Unmodified 1807.8411 0.8410631 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 4 0 1 63.662 63.662 3 0.0038885 19657 TMT1-3 41.422 22.827 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4062 1160 4032 6535 8556 8556 1 EGGLGPLNIPLLADVTR Unmodified 1733.9676 0.96758424 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 0 6.5 0.5 1 1 82.98 82.98 3 1.1915E-05 26542 TMT1-6 84.071 66.852 30.362 67.005 70.112 81.235 107.74 104.59 29 66 72 80 110 101 3 3 3 3 3 3 25417 4063 989 4033 6536;6537 8557;8558;8559 8559 3 EGGLLTLAGAK Unmodified 1028.5866 0.58660996 587 P09417-2;P09417 QDPR Dihydropteridine reductase yes no 0 0 0 0 0 7 0 1 59.667 59.667 2 2.7426E-07 17321 TMT1-6 151.83 92.673 99.465 114.41 137.85 91.983 135.2 143.25 94 116 138 94 138 138 1 1 1 1 1 1 16843 4064 587 4034 6538 8560 8560 1 EGGPSQIGDALGFAVR Unmodified 1572.7896 0.78961988 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 64.092 64.092 2 1.8545E-27 19525 TMT1-4 147.39 138.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4065 471 4035 6539 8561 8561 1 EGGQTAPASTR Unmodified 1073.5102 0.51015055 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 2 0.816 1 1 1 21.627 21.627 2 2.6716E-06 3944 TMT1-1 129.88 99.284 297.41 135.98 213.29 168.69 234.15 113.78 279 150 213 170 235 113 4 4 4 4 4 4 48613 + 4066 506 4036 6540;6541;6542 8562;8563;8564;8565 8564 4 EGGQVYGTLGGMLTR Unmodified 1537.7559 0.75587691 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 6 0 1 59.761 59.761 2 6.2558E-10 18006 TMT1-5 121.18 90.57 54.064 64.579 55.955 59.58 25.499 61.1 51 65 58 58 29 58 1 1 1 1 1 1 12097 4067 923 4037 6543 8566 8566 1 EGGSIPVTLTFQEATGK Unmodified 1733.8836 0.88357984 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5.67 0.471 1 2 65.57 65.57 2;3 4.1155E-14 20169 TMT1-4 95.197 72.568 146.66 118.69 136.98 100.39 156 166.11 138 123 138 102 159 160 2 2 2 2 2 2 45871 4068 2434 4038 6544;6545;6546 8567;8568;8569 8567 3 EGGVTFTWVEK Unmodified 1251.6136 0.61355299 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 6 0 1 62.886 62.886 3 0.00055629 19208 TMT1-5 91.313 66.459 85.158 71.021 54.385 82.612 84.361 82.873 80 73 58 80 87 80 1 1 1 1 1 1 10043 4069 1073 4039 6547 8570 8570 1 EGHPVTSEPSRPEPAVFK Unmodified 1962.9799 0.97993984 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 1 4.5 0.5 1 1 38.136 38.136 4 0.00070116 9311 TMT1-4 63.337 47.109 337.76 492.84 343.86 322.96 335.08 471.2 319 490 360 320 350 451 2 2 2 2 2 2 27187 4070 1904 4040 6548;6549 8571;8572 8572 2 EGIAQTVFLGLNR Unmodified 1416.7725 0.77251325 1160 P48637 GSS Glutathione synthetase yes yes 0 0 0 0 0 8 0 2 67.646 67.646 2;3 1.1854E-07 20522 TMT1-7 120.87 68.39 108.19 122.87 106.15 86.946 96.679 175.26 102 124 109 87 102 167 2 2 2 2 2 2 30245 4071 1160 4041 6550;6551 8573;8574 8574 2 EGICAIGGTSEQSSVGTQHSYSEEEK Unmodified 2769.2035 0.20354637 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 3.33 0.471 2 1 44.809 44.809 3;4;5 8.4253E-44 13251 TMT1-2 143.29 140.79 145.33 286.59 218.81 150.62 189.75 242.96 138 282 225 153 196 233 3 3 3 3 3 3 56039 4072 690 4042 6552;6553;6554 8575;8576;8577 8575 3 EGIILFK Unmodified 818.49019 0.49019038 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 7.5 0.5 1 1 63.719 63.719 2 0.0015913 19002 TMT1-7 93.262 11.628 249.35 400.38 311.77 279.2 206.79 488.72 236 397 323 276 226 464 1 1 1 1 1 1 40587 4073 498 4043 6555;6556 8578;8579 8579 2 EGIIPANYVQK Unmodified 1230.6608 0.66083754 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 6 0 1 55.327 55.327 2 2.2365E-06 16237 TMT1-5 133.23 120.61 122.65 197.96 138.17 139.66 156.05 142.66 116 196 145 138 160 138 1 1 1 1 1 1 22065 4074 1083 4044 6557 8580 8580 1 EGILNDDIYCPPETAVLLASYAVQSK Unmodified 2865.4106 0.41062602 894 P26038 MSN Moesin yes yes 0 0 0 0 0 6.4 0.49 3 2 89.75 89.75 3;4 2.127E-08 28906 TMT1-6 57.688 52.086 176.64 223.5 238.86 243.46 245.78 375.68 167 225 244 240 258 359 4 4 4 4 4 4 98441 4075 894 4045 6558;6559;6560;6561;6562 8581;8582;8583;8584;8585;8586 8586 6 EGILQYCQEVYPELQITNVVEANQPVTIQNWCK Unmodified 3962.9183 0.91827415 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-2 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 6 0 1 85.894 85.894 4 0.024835 28247 TMT1-5 26.683 22.366 0 31.92 0 15.035 14.208 23.047 0 30 0 14 15 22 0 1 0 1 1 1 4928.7 4076 482 4046 6563 8587 8587 1 EGIPALDNFLDKL Unmodified 1443.7609 0.76094551 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 6 0 1 87.253 87.253 3 7.065E-06 28718 TMT1-5 110.38 78.658 315.78 406.35 323.17 274.89 399.85 416.06 298 407 334 276 408 401 3 3 3 3 3 3 45337 4077 685 4047 6564 8588;8589;8590 8589 3 EGIPPDQQR Unmodified 1038.5094 0.50942227 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 0 2 0 3 31.588 31.588 2 0.0024028 7388 TMT1-1 76.221 45.718 23.213 36.147 35.385 28.762 43.94 22.198 22 36 36 29 44 22 1 1 1 1 1 1 3909.1 4078 1463 4048 6565;6566;6567 8591;8592;8593 8593 3 EGIREETVSLR Unmodified 1287.6783 0.67827852 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 1 2.5 0.5 1 1 37.733 37.733 3 8.6947E-07 10097 TMT1-1 131.17 107.95 299.91 426.41 269.1 273.34 246.41 408.71 283 424 285 269 261 390 2 2 2 2 2 2 66446 4079 813 4049 6568;6569 8594;8595 8594 2 EGISQEALHTQMLTAVQEISHLIEPLANAAR Unmodified 3369.7351 0.73508847 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.67 1.11 1 2 1 2 91.529 91.529 4;5 4.4908E-44 29551 TMT1-6 136.89 130.79 440.39 586.39 507.39 345.19 436.51 571.71 416 587 515 351 451 548 15 15 13 14 14 15 344840 4080 3010 4050 6570;6571;6572;6573;6574;6575 8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606;8607;8608;8609;8610 8598 15 EGISQEALHTQMLTAVQEISHLIEPLANAAR Oxidation (M) 3385.73 0.7300031 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 8 0 1 79.73 79.73 4 5.3112E-10 25302 TMT1-7 78.588 66.274 61.502 88.684 47.918 36.668 48.781 83.888 58 88 51 37 51 80 2 2 2 2 2 2 29016 4081 3010 4050 6576 8611;8612 8612 329 2 EGIYEAHIR Unmodified 1086.5458 0.54580778 1254 P51790-4;P51790-5;P51790;P51790-2 CLCN3 H(+)/Cl(-) exchange transporter 3 yes no 0 0 0 0 0 3 0 1 36.096 36.096 3 0.00036163 9770 TMT1-2 111.46 72.493 107.9 168.45 117.6 108.59 188.09 134.28 102 167 123 109 189 131 2 2 2 2 2 2 11920 4082 1254 4051 6577 8613;8614 8614 2 EGKPTIVEEDDPELFK Unmodified 1844.9044 0.90437487 314 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 1 4 0 1 57.766 57.766 3 2.3102E-08 17321 TMT1-3 107.75 71.553 99.056 223.36 114.31 109.38 156.37 173.56 94 218 123 109 160 167 1 1 1 1 1 1 22039 4083 314 4052 6578 8615 8615 1 EGKPYLVLGLLWQVIK Unmodified 1855.0971 0.097141855 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 1 9 0 2 91.611 91.611 3;4 1.1098E-19 27942 TMT1-8 137.52 99.961 184.05 284.22 204.72 198.54 243.32 263.82 174 282 214 197 250 254 4 4 4 4 4 4 24186 4084 690 4053 6579;6580 8616;8617;8618;8619 8618 4 EGLAELYEYK Unmodified 1213.5867 0.58666954 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 4 0 1 63.262 63.262 2 0.00011268 19498 TMT1-3 94.309 55.161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4085 1744 4054 6581 8620 8620 1 EGLAVAEEALVDHVAELTATPR Unmodified 2290.1805 0.18049015 20 B0I1T2;B0I1T2-4;B0I1T2-3 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 4 0 2 80.401 80.401 3;4 9.0655E-29 26144 TMT1-3 131.3 127.66 46.624 73.34 71.074 73.555 48.132 83.907 44 73 73 72 52 80 2 3 3 3 3 3 22849 4086 20 4055 6582;6583 8621;8622;8623 8622 3 EGLDEVAGIINDAK Unmodified 1442.7253 0.72528829 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 4 0 1 70.76 70.76 3 2.8414E-07 22404 TMT1-3 104.41 81.174 38.074 50.861 49.97 44.192 48.984 67.892 36 51 51 44 51 65 1 1 1 1 1 1 12995 4087 1744 4056 6584 8624 8624 1 EGLEIVK Unmodified 786.44872 0.4487195 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 4 0 1 50.54 50.54 2 0.016353 14477 TMT1-3 100.45 30.183 368.7 643.66 425.61 467.18 543.83 565.45 349 635 450 460 559 545 1 1 1 1 1 1 43431 4088 676 4057 6585 8625 8625 1 EGLELLK Unmodified 800.46437 0.46436956 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 5.5 0.5 1 1 57.42 57.42 2 0.0080509 16905 TMT1-4 120.49 16.57 11288 20087 15839 10808 16244 18108 10702 19843 16250 11032 16599 17422 3 3 3 3 3 3 1264400 4089 514 4058 6586;6587 8626;8627;8628 8626 3 EGLELPEDEEEK Unmodified 1415.6304 0.63038485 545;561;1954 P08238;Q58FF7;P07900;P07900-2;Q58FG0;Q58FF6 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4 no no 0 0 0 0 0 2 0 1 52.834 52.834 2 0.0026402 16111 TMT1-1 84.658 63.21 30.923 13.521 21.163 37.568 27.574 30.127 29 15 22 36 29 29 1 1 1 1 1 1 19221 4090 561;545;1954 4059 6588 8629 8629 1 EGLELPEDEEEKK Unmodified 1543.7253 0.72534787 545;561;1954 P08238;Q58FF7;P07900;P07900-2;Q58FG0;Q58FF6 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4 no no 0 0 0 0 1 3 0 1 48.402 48.402 4 0.0071552 14613 TMT1-2 58.487 22.73 76.917 108.36 145.53 100.28 134.82 143.26 73 109 145 102 138 138 1 1 1 1 1 1 11615 4091 561;545;1954 4060 6589 8630 8630 1 EGLENDLK Unmodified 916.45018 0.45017606 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 2 0 1 46.371 46.371 2 0.028801 13530 TMT1-1 82.645 62.09 107.81 168.22 131.75 155.53 146.43 157.85 102 167 138 152 152 152 1 1 1 1 1 1 17939 4092 2267 4061 6590 8631 8631 1 EGLHNAK Unmodified 767.3926 0.3926016 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5 0 1 25.369 25.369 3 0.019639 4346 TMT1-4 67.981 43.826 80.558 78.011 100.34 110.8 125.35 69.977 76 80 102 109 127 69 1 1 1 1 1 1 6875.6 4093 787 4062 6591 8632 8632 1 EGLLFEGR Unmodified 919.47633 0.47633123 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 4 0 1 52.651 52.651 2 0.006069 15354 TMT1-3 110.22 63.405 347.95 463.62 459.14 299.48 230.6 468.86 329 465 464 303 249 446 1 1 1 1 1 1 84569 4094 787 4063 6592 8633 8633 1 EGLLGLQNLLK Unmodified 1196.7129 0.71287311 2093 Q7Z460-2;Q7Z460-4;Q7Z460-5;Q7Z460-3;Q7Z460;O75122;O75122-3 CLASP1;CLASP2 CLIP-associating protein 1;CLIP-associating protein 2 yes no 0 0 0 0 0 8 0 1 76.203 76.203 3 0.0018127 23905 TMT1-7 78.908 20.685 30.434 58.571 65.125 34.517 50.492 36.935 29 58 65 36 51 36 1 1 1 1 1 1 3247.1 4095 2093 4064 6593 8634 8634 1 EGLLLWCQR Unmodified 1173.5965 0.59646314 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 7.5 0.5 1 1 62.843 62.843 2 7.3936E-06 18699 TMT1-7 160.54 79.419 1418.9 2114.9 1744.6 1425.7 1771.1 2045.2 1342 2105 1795 1430 1823 1966 4 4 4 4 4 4 401670 4096 672;195;1022 4065 6594;6595 8635;8636;8637;8638 8638 4 EGLLLYHTENNVGLK Unmodified 1698.8941 0.89408495 317 O75954 TSPAN9 Tetraspanin-9 yes yes 0 0 0 0 0 6 0 2 55.749 55.749 3;4 0.00022246 16398 TMT1-5 77.078 72.53 276.8 299.9 292.75 231.16 264.17 405 261 304 298 232 276 387 2 2 2 2 2 2 41839 4097 317 4066 6596;6597 8639;8640 8639 2 EGLPLTIAADR Unmodified 1154.6295 0.62953741 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 4 0 1 55.996 55.996 2 6.0936E-16 16639 TMT1-3 150.1 90.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4098 772 4067 6598 8641 8641 1 EGLPLTIAADRK Unmodified 1282.7245 0.72450043 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 6 0 1 49.909 49.909 3 0.0053913 14118 TMT1-5 68.108 39.381 138.67 180.47 165.58 177.63 142.48 243.25 131 181 171 174 152 232 1 1 1 1 1 1 15207 4099 772 4068 6599 8642 8642 1 EGLPVALDK Unmodified 940.52295 0.52294707 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 5 0 1 55.657 55.657 2 0.001858 16220 TMT1-4 111.61 62.811 234.83 352.06 269.32 254.48 318.86 365.07 222 350 280 253 328 351 1 1 1 1 1 1 34723 4100 2947 4069 6600 8643 8643 1 EGLQDIVIGIIK Unmodified 1296.7653 0.76530261 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 7 0 1 81.319 81.319 3 0.00060508 25786 TMT1-6 82.543 50.904 53.88 72.701 80.038 42.399 49.067 67.89 51 73 80 44 51 65 1 1 1 1 1 1 9828.2 4101 1565 4070 6601 8644 8644 1 EGLTSIEEVTK Unmodified 1204.6187 0.61869795 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 55.505 55.505 3 6.3198E-05 16443 TMT1-3 80.979 67.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4102 1833 4071 6602 8645 8645 1 EGMDVVK Unmodified 776.37384 0.37383999 958 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 0 4 0 1 43.042 43.042 2 0.011901 11486 TMT1-3 103.92 43.767 292.34 484.14 410.6 298.98 236.74 564.62 277 480 420 300 258 536 1 1 1 1 1 1 54992 4103 958 4072 6603 8646 8646 1 EGMGWSYLVFCLK Unmodified 1588.7418 0.74180675 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 0 9 0 1 84.073 84.073 3 0.013057 25146 TMT1-8 51.875 30.317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4104 2245 4073 6604 8647 8647 1 EGMIDIK Unmodified 804.40514 0.40514012 2733 Q9NRW1;Q9NRW1-2 RAB6B Ras-related protein Rab-6B yes no 0 0 0 0 0 5 0 1 51.156 51.156 2 0.019116 14451 TMT1-4 98.299 42.289 160.7 262.8 179.71 184.34 147.72 325.18 152 260 189 181 160 309 1 1 1 1 1 1 17301 4105 2733 4074 6605 8648 8648 1 EGMNIVEAMER Unmodified 1277.5744 0.57440707 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 0 3.33 0.943 1 2 59.138 59.138 2;3 0.00038611 17690 TMT1-3 67.456 34.368 315.62 501.97 268.56 303.34 396.45 416.15 298 496 290 299 406 401 4 4 4 4 4 4 85101 4106 1461 4075 6606;6607;6608 8649;8650;8651;8652;8653 8653 5 EGNAIFTFPNTPVK Unmodified 1533.7827 0.78274359 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 7 0 2 65.647 65.647 3;4 1.842E-05 19654 TMT1-6 94.487 82.511 184.56 307.41 279.29 193.62 210.81 242.36 175 305 284 196 218 233 3 3 3 3 3 3 40558 4107 3063 4076 6609;6610 8654;8655;8656 8654 3 EGNAVAVR Unmodified 814.42972 0.42971539 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 2.5 0.5 1 1 27.453 27.453 2 0.0040999 6097 TMT1-1 127.46 48.846 466 394.08 514.85 343.65 437 460.83 439 408 514 350 448 444 2 2 2 2 2 2 107090 4108 1700 4077 6611;6612 8657;8658 8657 2 EGNDLYHEMIESGVINLK Unmodified 2059.9885 0.98845562 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 71.211 71.211 3;4 9.8112E-25 22333 TMT1-4 142.58 128.42 169 262.49 228.23 163.4 293.91 299.69 160 261 233 167 298 289 4 4 4 4 4 4 33386 4109 508 4078 6613;6614 8659;8660;8661;8662 8660 4 EGNPEEDLTADK Unmodified 1316.5732 0.57320432 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 2 0 1 45.928 45.928 3 3.8476E-07 13289 TMT1-1 116.81 94.274 122.7 224.01 107.3 93.239 165.25 149.85 116 220 116 94 167 145 1 1 1 1 1 1 29928 4110 1066 4079 6615 8663 8663 1 EGNQDKFSYLPIQK Unmodified 1665.8362 0.83623572 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 7 0 1 56.329 56.329 3 2.6796E-09 16026 TMT1-6 107.11 80.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4111 856 4080 6616 8664 8664 1 EGPEGNDIRR Unmodified 1141.5476 0.54759869 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 1 2 0 1 24.236 24.236 3 0.012013 4736 TMT1-1 66.568 47.611 30.846 20.861 27.925 45.931 26.383 53.613 29 22 29 44 29 51 1 1 1 1 1 1 1822.9 4112 1552 4081 6617 8665 8665 1 EGPFGTLVYTIK Unmodified 1323.7075 0.70745338 1025 P35625 TIMP3 Metalloproteinase inhibitor 3 yes yes 0 0 0 0 0 8 0 1 71.191 71.191 2 0.00029362 21956 TMT1-7 78.903 21.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4113 1025 4082 6618 8666 8666 1 EGPGPEDTVQDNLGAAGAEEEQEEHQK Unmodified 2863.238 0.23801762 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 2 0 1 48.314 48.314 4 5.6283E-54 14211 TMT1-1 161.68 155.52 131.53 183.08 101.35 110.87 118.36 182.11 124 182 109 109 124 174 2 2 2 2 2 2 40072 4114 1000 4083 6619 8667;8668 8667 2 EGPIDLGACNQDDWISAVRPVIEK Unmodified 2681.3119 0.31191502 3028 Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 0 0 1 6 0 1 72.955 72.955 4 0.040014 23147 TMT1-5 32.264 12.886 54.28 57.624 25.608 45.779 41.839 60.634 51 58 29 44 44 58 1 1 1 1 1 1 5579.9 4115 3028 4084 6620 8669 8669 1 EGPLCDELIR Unmodified 1200.5809 0.58087266 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 2 0 1 53.832 53.832 2 0.00031429 16284 TMT1-1 123.6 99.077 54.081 80.813 39.473 67.649 55.491 60.245 51 80 44 65 58 58 1 1 1 1 1 1 80525 4116 1816 4085 6621 8670 8670 1 EGPYDVVVLPGGNLGAQNLSESAAVK Unmodified 2583.318 0.31804626 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 71.328 71.328 4 1.7208E-11 22427 TMT1-4 86.08 65.189 653.18 999.64 642.61 646.42 728.81 939.67 617 991 679 639 756 901 5 5 5 5 5 5 223520 4117 2468 4086 6622;6623 8671;8672;8673;8674;8675 8673 5 EGPYSISVLYGDEEVPR Unmodified 1908.9105 0.91052288 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.71 1.48 1 2 2 1 1 65.536 65.536 2;3 1.5366E-26 21489 TMT1-2 159.34 128.86 1208.2 1357.5 1373.4 1184.6 1294.3 1481.1 1140 1374 1399 1181 1338 1424 11 11 11 11 11 11 891700 4118 831 4087 6624;6625;6626;6627;6628;6629;6630 8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686 8679 11 EGQDTQSKPLNLLTVWDWSVQFEPK Unmodified 2944.4607 0.46068775 2596 Q9C0I1 MTMR12 Myotubularin-related protein 12 yes yes 0 0 0 0 1 8 0 1 86.655 86.655 4 0.0022742 27854 TMT1-7 41.423 23.776 23.303 36.396 20.162 30.103 20.844 22.857 22 36 22 29 22 22 1 1 1 1 1 1 4216.6 4119 2596 4088 6631 8687 8687 1 EGQEDQGLTK Unmodified 1103.5095 0.50948185 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 no no 0 0 0 0 0 2.5 0.5 1 1 36.343 36.343 3 2.4774E-05 9551 TMT1-1 136.49 123.29 253.3 459.57 319.57 291.08 364.04 432 240 453 334 290 375 415 3 3 3 3 3 3 47188 4120 901 4089 6632;6633 8688;8689;8690 8688 3 EGQEEVLKEVVESEGER Unmodified 1944.9276 0.9276295 2237 Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 0 1 2 0 1 58.751 58.751 3 5.6153E-11 18370 TMT1-1 94.569 75.179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4121 2237 4090 6634 8691 8691 1 EGQFKDIITK Unmodified 1177.6343 0.63428844 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 7 0 1 51.258 51.258 3 0.036328 14042 TMT1-6 54.7 38.562 251.35 291.7 249.24 274.55 187.33 330.44 237 294 259 268 202 315 1 1 1 1 1 1 22193 4122 1540 4091 6635 8692 8692 1 EGQGNLPVR Unmodified 968.50394 0.50394297 1721 Q13564-3;Q13564-2;Q13564;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 0 0 3 0 1 32.987 32.987 2 0.012232 8494 TMT1-2 85.862 50.244 46.41 64.695 79.893 57.279 71.93 52.313 44 65 80 58 73 51 1 1 1 1 1 1 8766.7 4123 1721 4092 6636 8693 8693 1 EGQPVCSQR Unmodified 1059.4767 0.47674194 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 2 0.816 1 1 1 23.377 23.377 2 0.00035673 4567 TMT1-1 140.05 85.337 348.48 287.93 337.61 276.62 320.19 296.81 328 298 341 277 328 287 5 5 5 5 5 5 81744 4124 484 4093 6637;6638;6639 8694;8695;8696;8697;8698 8696 5 EGRPSGEAFVELESEDEVK Unmodified 2105.9753 0.97530798 983 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 1 2 0 1 53.691 53.691 3 1.7608E-13 16421 TMT1-1 114.3 90.499 108.09 168.97 85.355 127.28 110.29 151.42 102 167 94 123 116 145 2 2 2 2 2 2 25844 4125 983 4094 6640 8699;8700 8700 2 EGRPSGEAFVELESEEEVK Unmodified 2119.991 0.99095804 1325 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 0 1 2 0 1 54.285 54.285 3 3.2242E-11 16602 TMT1-1 92.671 69.571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4126 1325 4095 6641 8701 8701 1 EGRPVYISLPHFLYASPDVSEPIDGLNPNEEEHR Unmodified 3875.8755 0.87548136 749 P16671;P16671-3;P16671-4 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 1 5 0 1 66.881 66.881 5 5.1058E-05 20590 TMT1-4 51.242 42.329 68.599 101.05 106.94 103 112.47 120.45 65 101 109 102 116 116 2 2 2 2 2 2 38153 4127 749 4096 6642 8702;8703 8702 2 EGSALSHVR Unmodified 954.48829 0.4882929 1929 Q3MHD2;Q3MHD2-2 LSM12 Protein LSM12 homolog yes no 0 0 0 0 0 3.5 0.5 1 1 26.635 26.635 3 0.0025478 5068 TMT1-3 84.615 52.679 77.618 55.263 72.715 57.565 79.503 44.635 73 58 73 58 80 44 2 2 2 2 2 2 5756.9 4128 1929 4097 6643;6644 8704;8705 8705 2 EGSASTEVLR Unmodified 1047.5197 0.51965261 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 2 0 1 34.723 34.723 2 0.0027892 8893 TMT1-1 98.233 77.904 30.481 58.702 57.131 43.756 49.517 52.953 29 58 58 44 51 51 1 1 1 1 1 1 6102 4129 293 4098 6645 8706 8706 1 EGSIWNHQPCFLK Unmodified 1614.7613 0.76129664 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 8 0 1 55.261 55.261 3 0.00065152 15687 TMT1-7 59.227 38.846 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4130 1656 4099 6646 8707 8707 1 EGSMENEIAVLHK Unmodified 1455.7028 0.70277871 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 0 4 0 1 51.488 51.488 3 2.7883E-08 14844 TMT1-3 119.01 79.354 107.43 206.01 163.76 90.611 126.07 197.88 102 203 167 94 131 189 1 1 1 1 1 1 21596 4131 1746 4100 6647 8708 8708 1 EGSPLHK Unmodified 766.39735 0.39735263 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 5 0 1 31.065 31.065 3 0.021865 6512 TMT1-4 65.803 56.94 53.971 64.318 71.921 65.871 47.181 91.396 51 65 73 65 51 87 1 1 1 1 1 1 2716.4 4132 2851 4101 6648 8709 8709 1 EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK Unmodified 3815.9622 0.9621711 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 1 9 0 1 101.23 101.23 5 0.00087588 31456 TMT1-8 34.937 29.557 15.936 14.647 14.255 22.798 21.18 22.848 15 15 15 22 22 22 1 1 1 1 1 1 3323.2 4133 1057 4102 6649 8710 8710 1 EGSVVVDLAAEAGGNFETTKPGELYIHK Unmodified 2930.4662 0.46616706 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 1 6 0 1 69.093 69.093 4 2.3574E-05 21669 TMT1-5 54.744 38.343 30.73 44.283 27.598 21.741 35.081 45.903 29 44 29 22 36 44 1 1 1 1 1 1 9231 4134 1702 4103 6650 8711 8711 1 EGTCPEAPTDECKPVK Unmodified 1816.7971 0.79714938 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 4 0 2 39.43 39.43 3;4 3.3398E-07 10120 TMT1-3 103.13 94.534 138.78 158.11 165.79 105.91 177.72 196.4 131 160 167 109 181 189 2 2 2 2 2 2 26771 4135 451 4104 6651;6652 8712;8713 8712 2 EGTDLLK Unmodified 774.41233 0.41233399 3082 yes yes 0 0 0 0 0 8 0 1 62.227 62.227 2 0.026016 18433 TMT1-7 92.925 61.552 871.82 981.99 880.25 702.98 862.28 1028.6 822 992 901 706 889 988 1 1 1 1 1 1 65529 + 4136 3082 4105 6653 8714 8714 1 EGTDSSQGIPQLVSNISACQVIAEAVR Unmodified 2828.3974 0.39743557 2496 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 0 0 0 0 0 5 0 2 79.312 79.312 3;4 3.2888E-06 25455 TMT1-4 65.223 65.222 61.536 72.591 55.748 52.58 49.639 37.597 58 73 58 52 51 36 2 2 2 2 2 1 19314 4137 2496 4106 6654;6655 8715;8716 8715 2 EGTETFADHR Unmodified 1161.5051 0.50506518 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.5 1.12 1 1 1 1 28.888 28.888 3 8.9384E-15 6657 TMT1-1 183.13 164 1026.1 1489.5 1216.6 1050.2 1151.4 1587.5 970 1484 1255 1047 1199 1520 8 8 8 8 8 8 297180 4138 3010 4107 6656;6657;6658;6659 8717;8718;8719;8720;8721;8722;8723;8724 8718 8 EGTGSTATSSSSTAGAAGK Unmodified 1626.7333 0.73328679 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 4 0 1 30.595 30.595 3 6.9013E-26 6596 TMT1-3 128.26 109.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4139 145 4108 6660 8725 8725 1 EGTIQVQGQALFFR Unmodified 1592.8311 0.83109076 2421 Q96IU4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes yes 0 0 0 0 0 7 0 1 63.719 63.719 3 2.9202E-08 18923 TMT1-6 115.69 82.487 68.636 141.09 66.875 74.076 91.826 90.122 65 138 73 73 94 87 1 1 1 1 1 1 21533 4140 2421 4109 6661 8726 8726 1 EGVECEVINMR Unmodified 1334.5959 0.59587079 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 2 0 1 50.461 50.461 3 0.015587 15101 TMT1-1 56.225 34.139 23.248 28.689 35.826 28.903 35.045 37.376 22 29 36 29 36 36 1 1 1 1 1 1 3187.3 4141 645 4110 6662 8727 8727 1 EGVHGGLINK Unmodified 1022.5509 0.55089316 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 0 4.5 2.06 1 1 2 37.143 37.143 2;3 6.8025E-05 9047 TMT1-5 121.8 94.31 1938.8 2490.8 2239 1810 2375.4 2574.8 1831 2499 2291 1819 2435 2479 6 6 6 6 6 6 1920800 4142 540 4111 6663;6664;6665;6666 8728;8729;8730;8731;8732;8733 8732 6 EGVHGGLINKK Unmodified 1150.6459 0.64585618 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 1 5.75 2.77 1 2 1 35.259 35.259 3;4 4.9315E-05 7737 TMT1-6 110.46 85.071 23294 37088 28235 20082 25326 38808 22040 36777 29087 20349 26368 37083 9 9 9 9 9 9 860510 4143 540 4112 6667;6668;6669;6670 8734;8735;8736;8737;8738;8739;8740;8741;8742 8736 9 EGVIGVTEEQVHHIVK Unmodified 1772.9421 0.94209778 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 52.257 52.257 4 1.6984E-05 15145 TMT1-3 84.842 49.539 146.73 142.64 104.43 94.573 103.4 182.53 138 145 109 94 109 174 1 1 1 1 1 1 15918 4144 2859 4113 6671 8743 8743 1 EGVKFDESEK Unmodified 1166.5455 0.54553301 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 4 0 1 40.574 40.574 3 0.003395 10503 TMT1-3 84.605 46.367 803.2 1504.3 970.16 928.02 932.19 1372 761 1480 1022 918 977 1312 2 2 2 2 2 2 110390 4145 708 4114 6672 8744;8745 8744 2 EGVKTENNDHINLK Unmodified 1609.806 0.80599822 1404 P61956-2;P61956 SUMO2 Small ubiquitin-related modifier 2 yes no 0 0 0 0 1 5 0 1 37.443 37.443 4 0.00011863 8995 TMT1-4 85.837 58.428 161.23 214.63 131.11 101.47 116.83 208.8 152 214 138 102 123 199 1 1 1 1 1 1 17942 4146 1404 4115 6673 8746 8746 1 EGVLVEHVK Unmodified 1008.5604 0.56039521 3065 Q9Y6X5 ENPP4 Bis(5'-adenosyl)-triphosphatase ENPP4 yes yes 0 0 0 0 0 4 0 1 41.149 41.149 3 0.0022643 10776 TMT1-3 86.624 56.64 122.98 143.84 128.7 85.014 127.94 150.92 116 145 131 87 131 145 1 1 1 1 1 1 10342 4147 3065 4116 6674 8747 8747 1 EGVLYVGSK Unmodified 950.5073 0.50729701 1054 P37840-2;P37840;Q16143 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 0 0 0 0 0 6 0 1 49.734 49.734 2 0.0004817 14024 TMT1-5 136.57 81.959 903.75 1274.1 1036.5 879.2 1167.4 1227.8 854 1271 1069 881 1195 1183 1 1 1 1 1 1 136860 4148 1054 4117 6675 8748 8748 1 EGVQGPLNVSLSEEGK Unmodified 1641.821 0.82097959 668 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 0 4 0 1 56.985 56.985 3 1.1725E-05 17028 TMT1-3 69.148 48.485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4149 668 4118 6676 8749 8749 1 EGVVAAAEK Unmodified 872.46035 0.46034682 1054 P37840-2;P37840;P37840-3;Q16143 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 0 0 0 0 0 3 0.816 1 1 1 40.418 40.418 2 0.00012037 10378 TMT1-3 149.72 62.413 672.91 957.75 968.21 823.84 840.41 1016.4 637 958 985 821 873 976 4 4 4 4 4 4 168290 4150 1054 4119 6677;6678;6679 8750;8751;8752;8753 8753 4 EGVVECSFVK Unmodified 1152.5485 0.5485099 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 51.562 51.562 3 7.8423E-05 14602 TMT1-4 119.16 77.872 192.61 385.19 303.94 238.87 225.51 393.31 183 379 313 239 239 375 1 1 1 1 1 1 55668 4151 1075 4120 6680 8754 8754 1 EGVVGPELHHK Unmodified 1200.6251 0.62512073 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 33.15 33.15 4 0.00039926 7602 TMT1-3 91.855 37.247 200.31 239.31 215.69 181.11 205.92 279.81 189 241 221 181 214 268 1 1 1 1 1 1 18951 4152 1833 4121 6681 8755 8755 1 EGVVHGVATVAEK Unmodified 1294.6881 0.68811492 1054 P37840-2;P37840 SNCA Alpha-synuclein yes no 0 0 0 0 0 4.5 0.5 1 1 42.337 42.337 3 1.0771E-11 10916 TMT1-4 147.52 106.36 794.38 966.27 923.54 586.95 792.13 942.13 750 973 935 601 814 905 3 3 3 3 3 3 149190 4153 1054 4122 6682;6683 8756;8757;8758 8757 3 EGWEYVK Unmodified 909.42323 0.42323303 1998 Q5XKP0 QIL1 Protein QIL1 yes yes 0 0 0 0 0 5 0 1 51.076 51.076 3 0.018903 14440 TMT1-4 68.915 31.571 84.307 156.08 125.32 148.96 109.29 151.45 80 154 131 145 116 145 1 1 1 1 1 1 8502 4154 1998 4123 6684 8759 8759 1 EGWPLDIR Unmodified 984.50288 0.50288033 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 5 0 1 60.459 60.459 2 0.012693 18154 TMT1-4 96.253 42.499 85.007 101.9 53.584 59.027 62.411 83.499 80 102 58 58 65 80 1 1 1 1 1 1 21557 4155 2492 4124 6685 8760 8760 1 EGYDFHSSSEFEIVK Unmodified 1772.7893 0.78934511 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 0 4 0 1 56.813 56.813 3 1.2295E-11 16952 TMT1-3 128.71 111.22 61.108 117.81 89.349 111.84 104.73 120.67 58 116 94 109 109 116 1 1 1 1 1 1 11184 4156 1381 4125 6686 8761 8761 1 EGYLVKK Unmodified 835.48035 0.48035398 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 7 0 1 41.625 41.625 3 0.034725 10179 TMT1-6 66.073 12.601 326.03 390.24 417.98 280.31 217.59 507.6 308 394 421 283 237 482 1 1 1 1 1 1 28104 4157 567 4126 6687 8762 8762 1 EGYTSPK Unmodified 780.36538 0.3653838 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 4 0 1 33.596 33.596 2 0.038681 7751 TMT1-3 86.794 45.142 108.02 152.6 110.59 117.25 156.82 150.1 102 152 116 116 160 145 1 1 1 1 1 1 7369 4158 1150 4127 6688 8763 8763 1 EGYYGYTGAFR Unmodified 1282.5619 0.56185177 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 4 0 1 50.662 50.662 2 0.00012997 14539 TMT1-3 87.942 63.123 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4159 451 4128 6689 8764 8764 1 EHAALEPR Unmodified 921.46683 0.46682918 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 3 0 1 23.912 23.912 3 0.015633 4945 TMT1-2 66.27 15.663 23.246 28.684 36.156 21.496 20.983 30.315 22 29 36 22 22 29 1 1 1 1 1 1 2500.7 4160 2492 4129 6690 8765 8765 1 EHACVVAGLR Unmodified 1110.5604 0.56041199 2242 Q8TBF2;Q8TBF2-3;Q8TBF2-4;Q8TBF2-2;Q8TBF2-6;Q8TBF2-7 FAM213B Prostamide/prostaglandin F synthase yes no 0 0 0 0 0 5 0 1 32.744 32.744 3 0.0044275 7168 TMT1-4 74.424 49.17 84.869 101.52 77.14 65.126 70.25 90.737 80 102 80 65 73 87 1 1 1 1 1 1 4539.6 4161 2242 4130 6691 8766 8766 1 EHAELEELK Unmodified 1096.5401 0.5400537 1657 Q12912-2;Q12912 LRMP Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein yes no 0 0 0 0 0 2.5 0.5 1 1 41.287 41.287 3 0.00027605 11543 TMT1-1 119.68 48.23 184.75 185.79 170.43 129.27 199.66 226.69 174 189 174 131 204 218 2 2 2 2 2 2 15208 4162 1657 4131 6692;6693 8767;8768 8767 2 EHALLAYTLGVK Unmodified 1313.7343 0.73433683 1490 Q5VTE0;P68104;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 7.67 0.471 1 2 57.788 57.788 2;3 5.88E-14 16654 TMT1-7 177.76 133.99 1437.7 2310.7 1666.4 1361.5 2119.2 1741.1 1360 2289 1731 1373 2143 1690 5 5 5 5 5 5 503370 4163 1490 4132 6694;6695;6696 8769;8770;8771;8772;8773 8771 5 EHAMLAK Unmodified 798.40581 0.40580882 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 0 6 0 1 32.921 32.921 3 0.0097448 7378 TMT1-5 81.635 54.52 99.772 107.71 91.893 63.965 85.218 82.848 94 109 94 65 87 80 1 1 1 1 1 1 6196.1 4164 718 4133 6697 8774 8774 1 EHAPSIIFMDEIDSIGSSR Unmodified 2102.9943 0.99426928 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 4 0 1 68.468 68.468 3 1.8106E-25 21531 TMT1-3 120.9 103.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4165 1416 4134 6698 8775 8775 1 EHAVEGDCDFQLLK Unmodified 1659.7563 0.75627084 445 P02765 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes yes 0 0 0 0 0 4 0 1 52.682 52.682 3 5.148E-08 15313 TMT1-3 114.7 94.324 115.34 143.99 150.45 107.65 133.97 158.21 109 145 152 109 138 152 1 1 1 1 1 1 27998 4166 445 4135 6699 8776 8776 1 EHCPAGQPVK Unmodified 1121.5288 0.52877751 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 4 0 1 27.009 27.009 3 0.021951 5187 TMT1-3 53.683 35.819 15.887 14.511 22.591 5.8916 21.957 22.825 15 15 22 7 22 22 1 1 1 1 1 1 1578.6 4167 2028 4136 6700 8777 8777 1 EHEKEVLQK Unmodified 1138.5982 0.59823728 752 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 1 5 0 1 33.396 33.396 4 0.00057526 7399 TMT1-4 103.7 39.66 263.25 455.39 274.65 235.3 392.16 449.32 249 449 290 237 400 432 1 1 1 1 1 1 27999 4168 752 4137 6701 8778 8778 1 EHEVFQR Unmodified 943.45118 0.45117911 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 26.619 26.619 3 0.0015543 5826 TMT1-1 77.741 53.769 54.066 64.583 55.682 65.687 108.43 74.724 51 65 58 65 109 73 1 1 1 1 1 1 6247.2 4169 245 4138 6702;6703 8779;8780 8779 2 EHEVTIFVR Unmodified 1128.5928 0.59275797 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 4 0 1 41.815 41.815 3 0.0023885 11009 TMT1-3 85.744 38.001 53.886 72.717 79.03 65.004 70.769 75.799 51 73 80 65 73 73 1 1 1 1 1 1 14588 4170 1283 4139 6704 8781 8781 1 EHFGTVK Unmodified 816.413 0.41300269 1865 Q15631;Q15631-2 TSN Translin yes no 0 0 0 0 0 6 0 1 33.313 33.313 3 0.025159 7560 TMT1-5 63.48 35.955 214.43 318.9 298.74 321.03 290.41 312.58 203 318 308 315 302 301 2 2 2 2 2 2 22009 4171 1865 4140 6705 8782;8783 8783 2 EHGAFDAVK Unmodified 972.46649 0.46649483 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 36.814 36.814 3 0.0017727 9035 TMT1-3 90.108 46.862 200.09 328.3 175.96 175.8 207.15 250.99 189 324 189 174 214 241 1 1 1 1 1 1 22464 4172 657 4141 6706 8784 8784 1 EHGFAGWFETSAK Unmodified 1465.6626 0.66262845 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 7 0 1 55.547 55.547 3 0.00066355 15708 TMT1-6 77.894 71.884 153.19 249.29 190.59 129.07 146.21 199.43 145 247 196 131 152 191 1 1 1 1 1 1 33723 4173 1734 4142 6707 8785 8785 1 EHHFEAIALVEK Unmodified 1421.7303 0.73031409 176 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 0 0 5 0 2 47.322 47.322 2;4 1.4087E-08 12956 TMT1-4 145.55 111.59 266.16 328.93 253.63 342.71 268.44 375.03 251 330 268 332 284 359 2 2 2 2 2 2 32091 4174 176 4143 6708;6709 8786;8787 8787 2 EHIEELLR Unmodified 1037.5506 0.55055881 1382 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 0 4 0 1 44.552 44.552 3 0.0055563 12073 TMT1-3 82.75 27.974 37.932 50.466 74.204 35.089 49.403 67.88 36 51 73 37 51 65 1 1 1 1 1 1 23129 4175 1382 4144 6710 8788 8788 1 EHIQLNESK Unmodified 1096.5513 0.55128709 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 4 0 1 35.132 35.132 3 0.0026541 8390 TMT1-3 83.862 52.489 122 206.95 239.94 126.36 133.88 135.83 116 206 239 131 138 131 1 1 1 1 1 1 11349 4176 1018 4145 6711 8789 8789 1 EHIYDLR Unmodified 944.47158 0.4715802 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 3.5 0.5 1 1 36.892 36.892 3 0.0018992 10107 TMT1-2 110.81 77.545 169.31 216.95 214.61 165.91 203.45 250.03 160 218 218 167 210 240 2 2 2 2 2 2 51830 4177 1789 4146 6712;6713 8790;8791 8790 2 EHKLDGK Unmodified 825.43447 0.43446642 120 O14979-3;O14979-2;O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 1 5.5 0.5 1 1 28.561 28.561 4 0.0097294 5860 TMT1-5 85.212 21.647 552.38 433.96 390.33 427.92 360.78 374.53 519 449 405 419 376 361 2 2 2 2 2 2 15163 4178 120 4147 6714;6715 8792;8793 8793 2 EHLELFWSR Unmodified 1215.6037 0.60365701 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7 1 1 1 55.754 55.754 3 0.00017894 16242 TMT1-5 86.882 69.968 23.15 59.716 26.023 37.165 33.602 68.331 22 58 29 36 36 65 1 1 1 1 1 1 3596.8 4179 1540 4148 6716;6717 8794;8795 8794 2 EHLGLALALK Unmodified 1063.639 0.63897988 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 8 0 1 54.917 54.917 3 0.0017948 15515 TMT1-7 85.355 53.983 99.457 138.14 119.06 117.45 119.13 120.26 94 138 123 116 123 116 1 1 1 1 1 1 13993 4180 2563 4149 6718 8796 8796 1 EHLHIVK Unmodified 874.50249 0.5024864 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 6 0 1 32.419 32.419 3 0.0035783 7174 TMT1-5 65.038 42.208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4181 1174 4150 6719 8797 8797 1 EHLLLAR Unmodified 850.50249 0.5024864 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 6 0 1 36.486 36.486 3 0.0017523 8753 TMT1-5 114.02 68.942 314.42 483.32 307.11 386.23 399.99 445.9 297 479 328 377 414 429 3 3 3 3 3 3 29723 4182 1180 4151 6720 8798;8799;8800 8798 3 EHLLSYLEK Unmodified 1130.5972 0.59717465 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 7 0 1 54.52 54.52 3 0.003271 15283 TMT1-6 79.489 34.352 130.05 142.1 203.74 150.93 162.86 142.46 123 145 203 152 167 138 1 1 1 1 1 1 8971.7 4183 2788 4152 6721 8801 8801 1 EHLLTNHLK Unmodified 1103.6087 0.60874239 626 P10155;P10155-3;P10155-5;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 6 0 1 36.149 36.149 4 0.00094939 8623 TMT1-5 95.502 55.15 99.448 169.41 94.09 125.89 156.42 150.11 94 167 102 123 160 145 1 1 1 1 1 1 6925.9 4184 626 4153 6722 8802 8802 1 EHMGDILYK Unmodified 1104.5274 0.52738052 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 5 0 1 47.105 47.105 3 0.00011064 12861 TMT1-4 91.584 74.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4185 1057 4154 6723 8803 8803 1 EHMQPTHPIR Unmodified 1244.6084 0.60842481 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 4 0 1 23.325 23.325 4 0.0056539 4052 TMT1-3 67.113 63.541 11.542 22.212 25.007 14.634 14.373 18.778 11 22 25 15 15 18 1 1 1 1 1 1 1524.3 4186 1411 4155 6724 8804 8804 1 EHNELQQK Unmodified 1024.4938 0.49377221 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 2.5 0.5 1 1 26.846 26.846 3 0.0013349 6030 TMT1-2 103.87 62.443 92.254 99.571 100.06 86.846 121.31 97.808 87 101 102 87 123 95 2 2 2 2 2 2 9666.8 4187 3011 4156 6725;6726 8805;8806 8806 2 EHNGQVTGIDWAPESNR Unmodified 1908.8715 0.87145203 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 3.5 0.5 1 1 43.412 43.412 3 8.7456E-14 11598 TMT1-3 120.52 107.11 131.7 97.232 144.51 156.43 116.26 182.17 124 102 146 153 124 174 2 2 2 2 2 2 35450 4188 128 4157 6727;6728 8807;8808 8808 2 EHPDAWTR Unmodified 1010.457 0.45699277 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 3 0 1 29.119 29.119 3 0.012259 7051 TMT1-2 70.856 41.706 68.901 95.415 60.952 74.213 45.185 138.36 65 95 65 72 51 131 2 2 2 2 2 2 10527 4189 121 4158 6729 8809;8810 8810 2 EHPLWQAAAIVPFLLLDKR Unmodified 2216.247 0.24699399 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 1 9 0 1 82.098 82.098 4 0.038941 24389 TMT1-8 29.027 17.335 23.248 28.689 35.826 28.903 35.045 37.376 22 29 36 29 36 36 1 1 1 1 1 1 4291.7 4190 2779 4159 6730 8811 8811 1 EHPVIESHPDNALEDLR Unmodified 1969.9494 0.949368 1721 Q13564-3;Q13564-2;Q13564;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 0 0 2 0 1 43.506 43.506 4 0.0030021 12376 TMT1-1 53.395 41.267 30.82 35.9 19.507 44.62 64.686 36.53 29 36 22 43 65 36 1 1 1 1 1 1 5810.7 4191 1721 4160 6731 8812 8812 1 EHPVPLLPIR Unmodified 1169.6921 0.69207809 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 6 0 1 47.768 47.768 3 0.0011514 13252 TMT1-5 90.15 61.194 115.63 129.71 112.27 109.47 157.98 126.61 109 131 116 109 160 123 1 1 1 1 1 1 40510 4192 701 4161 6732 8813 8813 1 EHQHEEIQNVR Unmodified 1417.6698 0.66983909 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 2 0 1 22.072 22.072 4 0.012949 3954 TMT1-1 55.314 42.334 23.254 36.26 28.474 13.721 51.961 21.969 22 36 29 15 51 22 1 1 1 1 1 1 3106 4193 2007 4162 6733 8814 8814 1 EHQISPGDFPNLK Unmodified 1480.731 0.73104237 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 0 5.5 0.5 1 1 50.479 50.479 3 3.1353E-05 14280 TMT1-5 101.3 73.655 484.94 709.22 490.37 442.15 623.71 679.37 458 705 513 442 638 654 3 3 3 3 3 3 64789 4194 2802 4163 6734;6735 8815;8816;8817 8817 3 EHQISPGDFPSLR Unmodified 1481.7263 0.72629134 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 47.601 47.601 3 7.8612E-06 13096 TMT1-4 105.08 81.091 106.59 199.16 131.29 124.39 176.61 203.9 101 196 138 124 181 196 2 2 2 2 2 2 64192 4195 2654 4164 6736;6737 8818;8819 8819 2 EHSNPNYDK Unmodified 1102.468 0.46795139 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 3 0 1 25.227 25.227 3 0.0081053 5424 TMT1-2 69.276 55.613 23.262 36.283 27.081 44.966 80.375 36.082 22 36 29 44 80 36 1 1 1 1 1 1 7308.7 4196 1763 4165 6738 8820 8820 1 EHSSLAFWK Unmodified 1103.54 0.53999412 441 P02749;CON__P17690 APOH Beta-2-glycoprotein 1 yes no 0 0 0 0 0 9 0 1 50.382 50.382 3 0.012695 11960 TMT1-8 56.432 32.05 77.609 86.538 47.649 43.759 79.368 67.025 73 87 51 44 80 65 1 1 1 1 1 1 4288.1 4197 441 4166 6739 8821 8821 1 EHTAYYIK Unmodified 1023.5025 0.50254598 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 5 0 1 36.786 36.786 3 0.0011819 8751 TMT1-4 109.86 70.841 569.85 922.21 646.12 608.6 636.58 843.16 539 913 676 603 663 808 1 1 1 1 1 1 57201 4198 979 4167 6740 8822 8822 1 EHTLAWK Unmodified 883.4552 0.45520186 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 6 0 1 39.873 39.873 3 0.0014468 10132 TMT1-5 78.616 46.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4199 842 4168 6741 8823 8823 1 EHVGTDQFGNK Unmodified 1230.5629 0.56291441 2163 Q8N183 NDUFAF2 Mimitin, mitochondrial yes yes 0 0 0 0 0 4 0 1 35.324 35.324 3 0.00081849 8473 TMT1-3 88.596 56.999 53.822 87.65 77.074 88.803 90.086 121.09 51 87 80 87 94 116 1 1 1 1 1 1 7060.9 4200 2163 4169 6742 8824 8824 1 EHVIANSGQFHCQR Unmodified 1681.7743 0.77432094 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 5 0 1 28.506 28.506 4 0.00076896 5501 TMT1-4 71.933 59.788 61.607 56.597 57.485 35.131 42.072 68.089 58 58 58 36 44 65 1 1 1 1 1 1 4610.8 4201 1314 4170 6743 8825 8825 1 EHVIEALR Unmodified 965.52943 0.52942943 912 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 0 4 0 1 36.674 36.674 3 0.0011456 8979 TMT1-3 112.41 60.008 99.607 114.81 113.59 101.75 157.79 142.61 94 116 116 102 160 138 1 1 1 1 1 1 32578 4202 912 4171 6744 8826 8826 1 EHVVAASK Unmodified 839.45012 0.45011648 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 5 0 1 28.295 28.295 3 0.018571 5392 TMT1-4 64.04 21.014 146.71 127.47 120.92 84.902 158.56 142.58 138 131 123 87 160 138 1 1 1 1 1 1 10284 4203 2476 4172 6745 8827 8827 1 EHYVDLK Unmodified 902.44978 0.44978213 846;724 P22392-2;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 0 4.5 0.5 1 1 38.601 38.601 3 0.016992 9841 TMT1-3 71.342 28.744 268.64 346.1 362.61 350.43 442.55 350.88 254 348 370 348 450 341 3 3 3 3 3 3 56870 4204 846;724 4173 6746;6747 8828;8829;8830 8829 3 EIAAVIETV Unmodified 943.52261 0.52261272 2095 Q7Z4G1;Q7Z4G1-2 COMMD6 COMM domain-containing protein 6 yes no 0 0 0 0 0 2 0 1 74.278 74.278 2 0.025416 24136 TMT1-1 75.854 52.426 7.511 0 0 7.651 0 7.462 7 0 0 7 0 7 1 0 0 1 0 1 3159.1 4205 2095 4174 6748 8831 8831 1 EIADGLCLEVEGK Unmodified 1431.6915 0.69154532 687 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 0 0 0 4 0 1 63.946 63.946 3 0.0001314 19726 TMT1-3 90.731 55.527 193.3 223.97 143.14 155.15 130.47 196.69 182 225 152 152 138 188 2 2 2 2 2 2 40079 4206 687 4175 6749 8832;8833 8832 2 EIADLGEALATAVIPQWQK Unmodified 2052.0892 0.089155943 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7.5 0.5 1 1 92.633 92.633 3;4 1.0109E-06 29936 TMT1-6 81.656 63.06 62.288 102.92 84.062 80.433 106.18 120.63 59 102 87 80 109 116 3 3 3 3 3 3 16228 4207 1184 4176 6750;6751 8834;8835;8836 8834 3 EIADYLAAGKDER Unmodified 1449.71 0.70997257 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 1 5 0 1 53.582 53.582 3 0.00013189 15436 TMT1-4 95.659 57.421 233.09 323.11 226.08 219.81 265.46 382.58 220 322 237 218 276 366 1 1 1 1 1 1 26985 4208 1292 4177 6752 8837 8837 1 EIAEAYLGK Unmodified 992.51786 0.51786169 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 5.33 0.471 2 1 55.376 55.376 2;3 6.1947E-05 16121 TMT1-4 152.47 46.898 776.59 1233.5 982.52 921.03 1032 941.68 735 1224 1018 914 1058 911 4 4 4 4 4 4 249590 4209 641 4178 6753;6754;6755 8838;8839;8840;8841 8839 4 EIAEAYLGYPVTNAVITVPAYFNDSQR Unmodified 3000.4869 0.4869025 618 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 6.33 0.471 2 1 84.358 84.358 3;4 0.00073833 27599 TMT1-5 44.301 32.885 62.834 41.844 43.984 35.788 49.92 51.876 59 44 44 36 51 50 3 3 2 3 3 3 25863 4210 618 4179 6756;6757;6758 8842;8843;8844 8842 3 EIAENALGK Unmodified 943.49746 0.4974606 982 P31942-2;P31942;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 0 4.5 0.5 1 1 47.436 47.436 2;3 0.00056329 13006 TMT1-4 91.087 48.897 84.971 101.8 59.787 89.947 84.024 82.882 80 102 65 87 87 80 1 1 1 1 1 1 9011.2 4211 982 4180 6759;6760 8845;8846 8846 2 EIAENITK Unmodified 916.48656 0.48656157 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 44.873 44.873 2 0.0062943 12221 TMT1-3 107.15 46.564 191.47 316.9 192.99 149.83 255.23 195.26 181 313 203 152 257 190 1 1 1 1 1 1 25279 4212 1296 4181 6761 8847 8847 1 EIAEPLFDLK Unmodified 1173.6281 0.62814043 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 5 0 2 70.266 70.266 2;3 0.00011391 21940 TMT1-4 137.95 68.142 154.25 256.72 187.37 191.28 219.6 202.67 146 254 196 189 225 196 2 2 2 2 2 2 56019 4213 3042 4182 6762;6763 8848;8849 8848 2 EIAQDFK Unmodified 849.42323 0.42323303 1496;1525;2067 P68431;Q16695;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3;Histone H3.2 no no 0 0 0 0 0 3.6 1.5 1 1 1 2 47.899 47.899 2;3 0.0057223 12922 TMT1-4 133.6 18.817 59217 132480 63247 69856 94063 84958 56162 129260 68952 68980 95784 82216 14 14 14 14 14 14 8070200 4214 1496;1525;2067 4183 6764;6765;6766;6767;6768 8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863 8859 14 EIAQDFKTDLR Unmodified 1334.683 0.68302954 1496;1525;2067 P68431;Q16695;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3;Histone H3.2 no no 0 0 0 0 1 5 0 1 50.704 50.704 3 7.8191E-05 14239 TMT1-4 107.12 78.493 1159.2 1973.4 1515.6 1662 1615.2 2493.1 1098 1952 1584 1631 1699 2382 2 2 2 2 2 2 167850 4215 1496;1525;2067 4184 6769 8864;8865 8864 2 EIATNPEEAGK Unmodified 1157.5564 0.55643205 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 2.5 0.5 1 1 40.954 40.954 2;3 1.8084E-05 11691 TMT1-2 120.96 53.937 30.469 51.113 65.579 34.357 57.535 45.262 29 51 65 36 58 44 1 1 1 1 1 1 6876.5 4216 1095 4185 6770;6771 8866;8867 8867 2 EICCYSISCK Unmodified 1318.5356 0.53557872 2762;2370 Q9NVJ2;Q96BM9 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A no no 0 0 0 0 0 6 0 1 49.08 49.08 3 0.00070117 13784 TMT1-5 66.595 33.972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4217 2762;2370 4186 6772 8868 8868 1 EICDKER Unmodified 948.43348 0.43348014 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 3 0 1 29.153 29.153 3 0.020589 6979 TMT1-2 78.324 36.344 92.25 139.49 66.877 73.5 122.47 81.785 87 138 73 73 123 80 1 1 1 1 1 1 4889.6 4218 325 4187 6773 8869 8869 1 EICNAYTELNDPMR Unmodified 1724.7498 0.74980525 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 3 0 1 56.607 56.607 3 0.00036515 17866 TMT1-2 58.723 38.881 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4219 1820 4188 6774 8870 8870 1 EIDAALQK Unmodified 886.476 0.47599688 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 4.5 0.5 1 1 48.246 48.246 2 0.00075436 13314 TMT1-4 148.38 46.739 755.45 1160.4 989.83 833.65 1005.9 1148.2 715 1154 1017 834 1036 1104 3 3 3 3 3 3 93332 4220 1635 4189 6775;6776 8871;8872;8873 8872 3 EIDCLSPEAQK Unmodified 1288.5969 0.59691665 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 4 0 1 48.761 48.761 3 0.0049024 13771 TMT1-3 68.536 54.572 130.55 143.5 118.25 125.03 125.29 174.45 123 145 123 123 131 167 1 1 1 1 1 1 12907 4221 1924 4190 6777 8874 8874 1 EIDGGLETLR Unmodified 1101.5666 0.5666028 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 2.5 0.5 1 1 51.261 51.261 2 0.00013584 15636 TMT1-2 135.63 85.673 192.91 230.43 203.92 190.91 186.58 281.43 182 232 210 189 196 269 3 3 3 3 3 3 47364 4222 1055 4191 6778;6779 8875;8876;8877 8877 3 EIDLLLGQTDDTR Unmodified 1487.7468 0.74675201 293 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 0 3.5 0.5 1 1 66.982 66.982 2;3 0.00078757 20840 TMT1-3 57.159 33.554 38.398 20.461 21.38 22.506 14.121 15.587 36 22 22 22 15 15 1 1 1 1 1 1 3235.1 4223 293 4192 6780;6781 8878;8879 8879 2 EIDTLNER Unmodified 988.48254 0.48253882 2966 Q9Y2I8-2;Q9Y2I8;Q9Y2I8-3 WDR37 WD repeat-containing protein 37 yes no 0 0 0 0 0 2 0 1 39.123 39.123 2 0.0014369 10614 TMT1-1 88.294 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4224 2966 4193 6782 8880 8880 1 EIDYDGSGSVSQAEWVR Unmodified 1896.849 0.84898525 869 P23743;P23743-3 DGKA Diacylglycerol kinase alpha yes no 0 0 0 0 0 3 0 1 57.119 57.119 3 0.0001265 18128 TMT1-2 76.23 51.671 37.846 89.08 56.018 26.989 72.81 67.212 36 87 58 29 73 65 1 1 1 1 1 1 15820 4225 869 4194 6783 8881 8881 1 EIEDAAQFATADPEPPLEELGYHIYSSDPPFEVR Unmodified 3831.7792 0.77918094 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 4 0 1 82.311 82.311 4 0.00014535 26945 TMT1-3 44.616 34.569 0 7.3287 7.1343 0 7.322 0 0 7 7 0 7 0 0 1 1 0 1 0 3009.7 4226 566 4195 6784 8882 8882 1 EIEDIIEEVTVGYIR Unmodified 1776.9145 0.91454562 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 4 0 1 95.048 95.048 3 4.2269E-06 31009 TMT1-3 100.11 65.075 9.4958 10.763 17.977 18.082 6.4914 7.462 9 11 18 17 7 7 2 2 2 1 1 1 3254.6 4227 1723 4196 6785 8883;8884 8884 2 EIEDPEDR Unmodified 1001.4302 0.4301689 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 2 0 1 34.972 34.972 2 0.022499 8964 TMT1-1 87.181 62.183 30.711 28.041 44.5 28.523 27.733 37.585 29 29 44 29 29 36 1 1 1 1 1 1 5379.8 4228 920 4197 6786 8885 8885 1 EIEELKELLPEIR Unmodified 1609.8927 0.89268797 1175 P49321-2;P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 1 5 0 1 74.849 74.849 3 0.0036825 23695 TMT1-4 69.578 47.705 37.831 112.78 38.316 52.402 56.193 60.225 36 109 44 51 58 58 1 1 1 1 1 1 11227 4229 1175 4198 6787 8886 8886 1 EIEIDIEPTDK Unmodified 1300.6398 0.63982732 1879 Q15843 NEDD8 NEDD8 yes yes 0 0 0 0 0 2.5 0.5 1 1 61.433 61.433 3 0.0021902 19469 TMT1-1 77.64 46.412 68.787 87.544 86.747 64.416 77.575 91.594 65 88 88 65 80 88 2 2 2 2 2 2 8575.8 4230 1879 4199 6788;6789 8887;8888 8887 2 EIEIDIEPTDKVER Unmodified 1684.8519 0.85194536 1879 Q15843 NEDD8 NEDD8 yes yes 0 0 0 0 1 2.67 0.471 1 2 56.486 56.486 3;4 1.4521E-07 17742 TMT1-2 113.4 78.092 376.29 568.91 475.14 353.88 425.32 421.73 356 566 487 357 436 407 4 4 4 4 4 4 90081 4231 1879 4200 6790;6791;6792 8889;8890;8891;8892 8891 4 EIELLCQEHGQENDDLVQR Unmodified 2324.0703 0.07028777 1862 Q15555-5;Q15555-3;Q15555;Q15555-4 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 2.5 0.5 1 1 53.135 53.135 3 7.0708E-45 16189 TMT1-1 184.2 156.99 122.92 167.43 117.92 125.3 170.29 204.08 116 167 124 124 175 196 4 4 4 4 4 4 76600 4232 1862 4201 6793;6794 8893;8894;8895;8896 8893 4 EIENYPTCYK Unmodified 1315.5755 0.57545293 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 4 0 1 48.038 48.038 3 0.0019538 13511 TMT1-3 84.17 64.408 85.016 70.625 78.607 73.785 70.109 83.279 80 73 80 73 73 80 1 1 1 1 1 1 9866.1 4233 2490 4202 6795 8897 8897 1 EIEQEAAVELSQLR Unmodified 1613.8261 0.82606496 1147 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 0 0 0 0 0 2.5 0.5 1 1 66.497 66.497 3 0.00016987 21319 TMT1-1 80.387 47.864 45.468 66.211 56.65 67.028 92.15 90.112 43 66 59 66 94 87 2 2 2 2 2 2 13654 4234 1147 4203 6796;6797 8898;8899 8898 2 EIEQEAAVELSQLRDPQHDLDR Unmodified 2590.2623 0.2623223 1147 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 0 0 0 0 1 2.5 0.5 1 1 62.034 62.034 4 2.3394E-17 19762 TMT1-1 107.47 90.098 123.91 168.19 132.23 142.94 117.15 143.76 117 168 138 140 123 138 4 4 4 4 4 4 32104 4235 1147 4204 6798;6799 8900;8901;8902;8903 8901 4 EIETFDMESLR Unmodified 1368.6231 0.6231314 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 3 0 1 62.235 62.235 2 0.0018426 20084 TMT1-2 96.015 70.798 38.198 43.652 35.192 21.283 35.395 37.366 36 44 36 22 36 36 1 1 1 1 1 1 4697.7 4236 2630 4205 6800 8904 8904 1 EIETLVEEK Unmodified 1088.5601 0.56012044 1925 Q32P28-4;Q32P28;Q32P28-3 LEPRE1 Prolyl 3-hydroxylase 1 yes no 0 0 0 0 0 3 0 1 58.062 58.062 2 0.045714 18470 TMT1-2 67.704 27.659 61.622 64.196 48.377 59.312 63.717 45.086 58 65 51 58 65 44 1 1 1 1 1 1 3188.6 4237 1925 4206 6801 8905 8905 1 EIETNLR Unmodified 873.4556 0.45559579 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 2 0 1 38.271 38.271 2 0.0083731 10283 TMT1-1 76.134 20.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4238 1138 4207 6802 8906 8906 1 EIEVDSSPSVLEILDTAGTEQFASMR Unmodified 2823.3484 0.34841969 1385 P61225 RAP2B Ras-related protein Rap-2b no no 0 0 0 0 0 4 0 1 88.438 88.438 3 4.508E-11 29212 TMT1-3 80.031 77.097 16.02 14.88 0 7.651 0 0 15 15 0 7 0 0 1 1 0 1 0 0 1828.5 4239 1385 4208 6803 8907 8907 1 EIEVGGGR Unmodified 815.41373 0.41373097 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 2.5 0.5 1 1 34.898 34.898 2 0.00086329 8907 TMT1-1 147.34 49.734 107.9 168.45 117.2 117.41 126.96 136.02 102 167 123 116 131 131 1 1 1 1 1 1 25596 4240 1412 4209 6804;6805 8908;8909 8908 2 EIFDIAFPDEQAEALAVER Unmodified 2162.0532 0.053164368 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 3.67 0.471 1 2 81.61 81.61 2;3 4.4455E-05 26572 TMT1-3 69.747 65.13 38.315 28.302 28.547 38.222 27.537 30.316 36 29 29 37 29 29 2 1 1 2 2 1 7551.3 4241 1042 4210 6806;6807;6808 8910;8911;8912 8911 3 EIFGLYGQTTGK Unmodified 1312.6663 0.66631685 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 0 7.33 0.471 2 1 61.863 61.863 2;3 4.2375E-08 18185 TMT1-6 132.17 94.038 652.19 836.98 766 719.01 778.69 791.14 616 840 787 713 802 763 4 4 4 4 4 4 164270 4242 2721 4211 6809;6810;6811 8913;8914;8915;8916 8913 4 EIFLSQPILLELEAPLK Unmodified 1952.1234 0.12341618 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 7 0 1 92.448 92.448 3 1.9927E-31 29974 TMT1-6 179.46 153.02 223.27 265.05 301.6 231.1 239.19 401.45 211 268 304 232 252 383 3 3 3 3 3 3 72841 4243 1044;1413;1414 4212 6812 8917;8918;8919 8918 3 EIFNFVLK Unmodified 1008.5644 0.56441796 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 1 74.664 74.664 2 0.0017839 23316 TMT1-7 84.498 43.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4244 1507 4213 6813 8920 8920 1 EIFQNEK Unmodified 906.4447 0.44469675 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 5 0 1 44.86 44.86 3 0.0065097 11973 TMT1-4 54.157 7.0902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4245 1702 4214 6814 8921 8921 1 EIFTFEK Unmodified 912.45928 0.45928418 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 6 0 1 61.204 61.204 2 0.018828 18541 TMT1-5 98.523 39.542 169.94 171.21 147.84 123.25 126.4 144.57 160 174 152 123 131 139 1 1 1 1 1 1 17113 4246 2448 4215 6815 8922 8922 1 EIFTYLVEGFK Unmodified 1344.6966 0.69655434 2483 Q99698 LYST Lysosomal-trafficking regulator yes yes 0 0 0 0 0 8 0 1 85.571 85.571 3 0.0015799 27443 TMT1-7 80.706 63.466 15.777 29.315 28.562 21.945 21.219 22.846 15 29 29 22 22 22 1 1 1 1 1 1 1701.4 4247 2483 4216 6816 8923 8923 1 EIFVDFAPFLSR Unmodified 1439.7449 0.74490152 1229 P50851-2;P50851;Q8NFP9 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 0 8 0 1 85.92 85.92 3 0.00074056 27546 TMT1-7 79.466 60.721 14.861 14.714 14.586 15.412 6.0709 15.817 14 15 15 15 7 15 1 1 1 1 1 1 10578 4248 1229 4217 6817 8924 8924 1 EIGELTQLK Unmodified 1029.5706 0.57062555 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 4.25 1.92 1 2 1 57.813 57.813 2;3 1.1333E-05 17143 TMT1-5 156.92 51.35 1755.3 2368.5 2339.6 1705.8 2135.5 2482.5 1660 2374 2372 1725 2198 2386 5 5 5 5 5 5 887320 4249 1851 4218 6818;6819;6820;6821 8925;8926;8927;8928;8929 8929 5 EIGELYLPK Unmodified 1060.5805 0.58046195 408 P01011 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 0 0 0 0 0 5.5 0.5 1 1 62.738 62.738 2;3 0.0016992 19009 TMT1-4 90.629 39.751 123.62 157.66 190.06 97.798 125.48 205.36 117 159 189 102 131 196 2 2 2 2 2 2 14146 4250 408 4219 6822;6823 8930;8931 8930 2 EIGGDVQK Unmodified 844.42905 0.42904669 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 2.33 1.25 1 1 1 39.339 39.339 2 0.0030189 10721 TMT1-1 133.68 61.326 2926.5 4720.7 3679.8 2930.2 3279.4 4054.2 2770 4680 3797 2938 3397 3891 5 5 5 5 5 5 665990 4251 1555;1556 4220 6824;6825;6826 8932;8933;8934;8935;8936 8933 5 EIGHGSFGAVYFAR Unmodified 1509.7365 0.7364621 2082 Q7L7X3;Q7L7X3-3;Q9UL54-2;Q9UL54-4;Q9UL54 TAOK1;TAOK2 Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO2 yes no 0 0 0 0 0 7 0 1 51.277 51.277 3 0.0033923 14039 TMT1-6 63.185 43.607 53.878 72.694 80.441 33.353 63.848 75.996 51 73 80 36 65 73 1 1 1 1 1 1 6130.7 4252 2082 4221 6827 8937 8937 1 EIGILTTNK Unmodified 987.56006 0.56006086 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q9NYB9-2;Q9NYB9-4;Q9NYB9;Q9NYB9-3 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 0 0 0 0 0 6.5 0.5 1 1 53.636 53.636 2 0.0099141 14957 TMT1-6 89.047 35.08 162 201.83 193.48 127.12 182.75 234.64 153 203 196 130 188 225 2 2 2 2 2 2 25921 4253 2158 4222 6828;6829 8938;8939 8939 2 EIGLLSEEVELYGETK Unmodified 1807.9091 0.90912589 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 3 0 1 75.914 75.914 3 0.016515 25426 TMT1-2 47.548 22.494 30.851 28.431 20.597 30.21 13.767 15.597 29 29 22 29 15 15 1 1 1 1 1 1 3261.3 4254 657 4223 6830 8940 8940 1 EIGNLLHPSVPISNDEDVDNKVER Unmodified 2688.3355 0.33548724 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 4 0 1 57.162 57.162 4 0.014425 17160 TMT1-3 38.629 18.732 68.853 94.202 70.067 65.548 70.231 90.738 65 94 73 65 73 87 1 1 1 1 1 1 14985 4255 1186 4224 6831 8941 8941 1 EIGPNDGFLAQLCQLNDR Unmodified 2058.9793 0.97928792 1241 P51452;P51452-2 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 0 5.5 0.5 1 1 73.449 73.449 3 3.1643E-14 23258 TMT1-4 121.26 91.881 247.4 151.37 130.62 163.56 130.04 197.76 232 160 137 159 138 189 4 4 4 4 4 4 26487 4256 1241 4225 6832;6833 8942;8943;8944;8945 8944 4 EIGQSVDEVEK Unmodified 1231.5932 0.59321148 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 2.5 0.5 1 1 47.064 47.064 2;3 2.1802E-07 13978 TMT1-2 111.63 61.507 46.246 80.428 94.147 56.173 85.577 82.838 44 80 94 58 87 80 1 1 1 1 1 1 16926 4257 1546 4226 6834;6835 8946;8947 8947 2 EIGWTDVGGWTGQGGSILGTK Unmodified 2118.0382 0.038183005 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 7 0 1 75.805 75.805 3 1.9925E-24 23667 TMT1-6 139 118.85 200.82 185.69 175.39 113.41 155.68 188.5 189 190 178 116 160 181 1 1 1 1 1 1 61817 4258 1559 4227 6836 8948 8948 1 EIHEQLK Unmodified 895.47633 0.47633123 942 P29728;P29728-2 OAS2 2'-5'-oligoadenylate synthase 2 yes no 0 0 0 0 0 4 0 1 34.331 34.331 3 0.0072705 8072 TMT1-3 87.323 30.042 115.13 258.91 87.229 157.6 177.18 203.88 109 252 102 152 183 196 1 1 1 1 1 1 14838 4259 942 4228 6837 8949 8949 1 EIHQFNR Unmodified 942.46716 0.46716353 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 28.439 28.439 3 0.0020536 5462 TMT1-4 107.43 80.292 39.185 43.337 50.076 51.824 49.696 36.958 37 44 51 51 51 36 1 1 1 1 1 1 4129.1 4260 1546 4229 6838 8950 8950 1 EIIDLVLDR Unmodified 1084.6128 0.61282471 1491;2068;2510 P68363;Q71U36-2;Q71U36;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 0 5 2.61 1 1 1 1 1 75.846 75.846 2 6.184E-20 24370 TMT1-3 195.88 111.41 3458 4701.9 3998.4 3491.6 4850.4 5072.2 3267 4701 4116 3496 4957 4888 7 7 7 7 7 7 1030700 4261 1491;2068;2510 4230 6839;6840;6841;6842;6843 8951;8952;8953;8954;8955;8956;8957;8958 8952 8 EIIDPVLDR Unmodified 1068.5815 0.58152458 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 2.83 1.34 1 2 1 1 1 56.982 56.982 2;3 6.6509E-14 17839 TMT1-1 188.98 126.78 4704.5 6530.4 5746.4 4252.4 4654.6 6559.5 4447 6526 5870 4284 4852 6278 10 10 10 10 10 10 1606000 4262 1492 4231 6844;6845;6846;6847;6848;6849 8959;8960;8961;8962;8963;8964;8965;8966;8967;8968 8962 10 EIIEQGIDLFNK Unmodified 1417.7453 0.74529545 3053 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes yes 0 0 0 0 0 6 0 1 74.33 74.33 3 0.0029608 23732 TMT1-5 69.716 45.373 30.493 74.925 41.344 36.246 33.901 60.861 29 73 44 36 36 58 1 1 1 1 1 1 8612 4263 3053 4232 6850 8969 8969 1 EIIFDLLSVGK Unmodified 1232.7016 0.70163972 332 O94915 FRYL Protein furry homolog-like yes yes 0 0 0 0 0 8 0 1 87.043 87.043 2 0.0014644 27981 TMT1-7 98.04 55.176 38.338 35.406 18.691 62.743 33.489 37.42 36 36 22 59 36 36 1 1 1 1 1 1 2812.7 4264 332 4233 6851 8970 8970 1 EIILVDDYSNDPEDGALLGK Unmodified 2175.0583 0.058309325 1636 Q10471;Q10471-2 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes no 0 0 0 0 0 4 0 1 75.513 75.513 3 0.00027521 24292 TMT1-3 51.348 34.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4265 1636 4234 6852 8971 8971 1 EIISECK Unmodified 877.42152 0.42151847 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 4 0 1 42.407 42.407 3 0.0063803 11242 TMT1-3 89.369 43.651 84.886 77.817 94.444 48.646 78.081 97.976 80 80 94 51 80 94 1 1 1 1 1 1 6812 4266 2263 4235 6853 8972 8972 1 EIISEMGELGVLGPTIK Unmodified 1784.9594 0.95938732 2335 Q92947;Q92947-2 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 80.39 80.39 3 1.764E-14 26106 TMT1-5 102.29 81.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4267 2335 4236 6854 8973 8973 1 EIISNLAK Unmodified 886.51238 0.51238239 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 6 0 1 52.245 52.245 2 0.0015271 15035 TMT1-5 87.308 18.573 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4268 286 4237 6855 8974 8974 1 EIISYDVK Unmodified 965.50696 0.50696266 2228 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase yes yes 0 0 0 0 0 5 0 1 53.161 53.161 2 0.022089 15212 TMT1-4 87.476 5.0236 84.638 123.54 97.248 118.47 134.24 135.82 80 123 102 116 138 131 1 1 1 1 1 1 17915 4269 2228 4238 6856 8975 8975 1 EIKDAISGIGTDEK Unmodified 1474.7515 0.75150304 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 6 0 1 53.853 53.853 3 9.4912E-05 15663 TMT1-5 89.484 67.164 298.5 644.83 320.87 274.37 376.64 452.96 283 630 345 275 387 435 2 2 2 2 2 2 24419 4270 555 4239 6857 8976;8977 8976 2 EIKDFFEVAK Unmodified 1224.639 0.63903946 2755 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 yes no 0 0 0 0 1 7 0 1 63.483 63.483 3 0.0016187 18870 TMT1-6 92.247 61.915 170.11 164.13 125.13 132.67 162.63 173.38 160 167 131 131 167 167 1 1 1 1 1 1 7395.2 4271 2755 4240 6858 8978 8978 1 EIKDILIQYDR Unmodified 1404.7613 0.76127986 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 1 6 0 1 61.725 61.725 3 0.022049 18741 TMT1-5 59.592 11.241 211.93 452.95 245.92 257.71 337.51 457.28 201 443 264 255 349 438 1 1 1 1 1 1 54899 4272 1419 4241 6859 8979 8979 1 EIKDSLAEVEEK Unmodified 1388.7035 0.70349021 1924 Q32MZ4-3;Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 1 4 0 2 54.022 54.022 3;4 0.00011375 15830 TMT1-3 101.2 81.88 585.78 841.67 562.12 487.78 527.27 898.52 553 837 589 486 555 857 2 2 2 2 2 2 52587 4273 1924 4242 6860;6861 8980;8981 8980 2 EIKLENLEPEHEYK Unmodified 1769.8836 0.88357984 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 4 0 1 49.638 49.638 4 0.00018283 14085 TMT1-3 81.632 54.296 200.46 245.13 185.41 245.62 242.05 268.12 189 246 196 239 251 258 1 1 1 1 1 1 34831 4274 570 4243 6862 8982 8982 1 EILAELTGR Unmodified 1000.5553 0.55530983 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 62.515 62.515 2 0.00042056 19004 TMT1-5 93.143 54.821 91.689 153.04 149.67 115.67 116.83 189.61 87 152 152 116 123 181 1 1 1 1 1 1 25137 4275 566 4244 6863;6864 8983;8984 8984 2 EILDAFDK Unmodified 949.47566 0.47566253 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 4.5 0.5 1 1 64.664 64.664 2 0.004794 19692 TMT1-4 122.52 49.478 281.55 603.62 499.37 332.64 547.99 502.44 268 593 510 341 555 486 3 3 3 3 3 3 55415 4276 538 4245 6865;6866 8985;8986;8987 8986 3 EILDESLR Unmodified 973.50803 0.50802529 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 2 0 1 51.388 51.388 2 0.00097466 15421 TMT1-1 146.27 55.957 84.356 162.69 111.49 86.036 128.15 143.45 80 160 116 87 131 138 1 1 1 1 1 1 26222 4277 2267 4246 6867 8988 8988 1 EILDKFTEEVVK Unmodified 1448.7763 0.77626123 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 1 5 0 1 68.846 68.846 3 0.00010372 21388 TMT1-4 101.6 71.906 92.189 123.13 91.015 63.772 98.294 159.23 87 123 94 65 102 152 1 1 1 1 1 1 8801.6 4278 1171 4247 6868 8989 8989 1 EILEQLLEAIVVATNPSGR Unmodified 2051.1263 0.12626973 2106 Q86U86-6;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86 PBRM1 Protein polybromo-1 yes no 0 0 0 0 0 9 0 1 112.33 112.33 3 1.8375E-05 34754 TMT1-8 64.705 55.762 0 4.256 0 0 0 7.462 0 4 0 0 0 7 0 1 0 0 0 1 759.51 4279 2106 4248 6869 8990 8990 1 EILGEDS Unmodified 761.34431 0.34431401 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 2 0 1 50.792 50.792 2 0.013106 15178 TMT1-1 102.98 95.309 15.7 45.29 27.943 14.329 21.313 30.306 15 44 29 15 22 29 1 1 1 1 1 1 8281.3 4280 1130 4249 6870 8991 8991 1 EILGTAQSVGCNVDGR Unmodified 1674.7995 0.79953264 951 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 0 4.5 0.5 1 1 50.344 50.344 2;3 1.1567E-17 14152 TMT1-4 175.29 154.04 99.355 137.85 136.44 92.19 128.67 119.98 94 138 138 94 131 116 2 2 2 2 2 2 52791 4281 951 4250 6871;6872 8992;8993 8993 2 EILGTCK Unmodified 819.41604 0.41603916 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 0 1 44.057 44.057 2 0.0077311 11836 TMT1-5 124.34 34.669 2402.8 3376.1 3036.6 2285.7 3148.2 3436.5 2272 3373 3099 2311 3223 3308 2 2 2 2 2 2 342530 4282 776 4251 6873 8994;8995 8995 2 EILHAMGK Unmodified 897.47422 0.47422274 908 P27338 MAOB Amine oxidase [flavin-containing] B yes yes 0 0 0 0 0 7 0 1 45.979 45.979 3 0.0024613 11897 TMT1-6 96.253 60.373 107.94 129.7 143.73 108.62 103.82 151.61 102 131 145 109 109 145 1 1 1 1 1 1 17924 4283 908 4252 6874 8996 8996 1 EILHCLK Unmodified 911.48987 0.48987281 1629 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 0 0 0 0 0 7 0 1 44.624 44.624 3 0.016365 11382 TMT1-6 72.138 39.784 60.758 171.88 102.38 110.92 112.62 105.52 58 167 109 109 116 102 1 1 1 1 1 1 6230.2 4284 1629 4253 6875 8997 8997 1 EILHHVNQAVR Unmodified 1314.7157 0.71566708 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 6 0 1 32.203 32.203 3 0.00067817 7133 TMT1-5 90.05 60.283 96.867 65.635 74.716 69.361 85.227 75.386 91 69 76 69 87 73 1 1 1 1 1 1 12114 4285 2325 4254 6876 8998 8998 1 EILIPVFK Unmodified 957.5899 0.58990443 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 8 0 1 72.593 72.593 2 0.0055446 22491 TMT1-7 117.17 35.385 192.46 357.81 351.29 257.37 370.4 352.94 183 354 356 261 377 341 1 1 1 1 1 1 45574 4286 1283 4255 6877 8999 8999 1 EILKEQENR Unmodified 1157.6041 0.60405094 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 4 0 1 34.978 34.978 3 0.0096973 8318 TMT1-3 74.849 47.024 1608.1 2079.1 1718.6 1429.8 2099.1 2236.3 1518 2083 1770 1438 2143 2154 1 1 1 1 1 1 121880 4287 2468 4256 6878 9000 9000 1 EILQEEEDLAEIVQLVGK Unmodified 2054.0783 0.078316486 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 4.33 0.471 2 1 95.34 95.34 3;4 4.7248E-14 31003 TMT1-3 117.18 105.53 36.022 53.426 32.109 55.178 44.494 48.832 34 53 34 53 46 47 5 5 4 5 4 5 7409.6 4288 1057 4257 6879;6880;6881 9001;9002;9003;9004;9005 9001 5 EILSEVER Unmodified 973.50803 0.50802529 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 2.5 0.5 1 1 48.547 48.547 2 4.6799E-05 14457 TMT1-1 161.02 41.746 436.43 555.21 479.08 447.16 451.24 638.45 412 557 494 443 472 611 3 3 3 3 3 3 113030 4289 1178 4258 6882;6883 9006;9007;9008 9007 3 EILSVDCSTNNPSQAK Unmodified 1761.8203 0.82032766 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 4.5 0.5 1 1 49.864 49.864 3 4.4699E-16 13940 TMT1-4 136.14 115.61 238.69 265.14 234.53 156.28 187.66 296.32 225 268 239 159 196 283 3 3 3 3 3 3 46519 4290 639 4259 6884;6885 9009;9010;9011 9010 3 EILVEESNVQR Unmodified 1314.6779 0.67794416 1355 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit yes yes 0 0 0 0 0 2 0 1 47.015 47.015 2 1.4143E-08 13740 TMT1-1 124.67 79.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4291 1355 4260 6886 9012 9012 1 EILVGDVGQTVDDPYATFVK Unmodified 2165.0892 0.089215523 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 5 0.577 1 4 1 76.004 76.004 3;4;5 3.9588E-31 24151 TMT1-4 150.45 127.35 1869.2 2753.2 2351.8 1882.1 2718.9 2254.8 1768 2743 2409 1897 2756 2188 9 9 8 9 9 9 640050 4292 865 4261 6887;6888;6889;6890;6891;6892 9013;9014;9015;9016;9017;9018;9019;9020;9021 9015 9 EILVGDVGVTITDPFK Unmodified 1701.9189 0.91890272 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 0 6 0 1 80.226 80.226 3 5.8106E-07 26028 TMT1-5 100.23 77.09 61.259 71.82 102.94 63.011 100.97 82.399 58 73 102 65 102 80 1 1 1 1 1 1 14073 4293 1364 4262 6893 9022 9022 1 EIMDAAEDYAK Unmodified 1254.5438 0.54381845 714 P14868 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 3 0 1 57.109 57.109 3 0.0006169 18067 TMT1-2 90.685 71.442 77.711 55.523 56.735 51.58 41.572 60.642 73 58 58 51 44 58 1 1 1 1 1 1 6060.7 4294 714 4263 6894 9023 9023 1 EIMLAAK Unmodified 774.43096 0.43096094 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 51.475 51.475 2 0.020697 14041 TMT1-6 97.068 36.308 472 785.48 436 492.73 547.25 766.83 446 775 469 484 570 734 2 2 2 2 2 2 449250 4295 633 4264 6895;6896 9024;9025 9025 2 EINALAEHGDLELDER Unmodified 1822.8697 0.86972069 155 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 53.036 53.036 3 0.00028704 16105 TMT1-1 74.793 68.212 38.357 20.348 28.329 36.707 50.648 29.469 36 22 29 36 51 29 1 1 1 1 1 1 4050.2 4296 155 4265 6897 9026 9026 1 EIPIVHR Unmodified 862.50249 0.5024864 1484 P67812-4;P67812;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 0 5 0 1 36.875 36.875 3 0.0039124 8798 TMT1-4 97.473 68.96 61.513 80.082 53.25 98.562 53.52 76.291 58 80 58 94 58 73 1 1 1 1 1 1 13060 4297 1484 4266 6898 9027 9027 1 EIPSDAPWK Unmodified 1041.5131 0.51311067 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 6 0 1 54.539 54.539 2 0.0013905 15920 TMT1-5 120.15 75.073 99.762 100.13 99.971 87.146 105.61 128.1 94 102 102 87 109 123 1 1 1 1 1 1 14281 4298 908 4267 6899 9028 9028 1 EIPSHVLSK Unmodified 1008.5604 0.56039521 1845 Q15369-2;Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 0 0 6 0 1 42.74 42.74 3 0.0059004 11250 TMT1-5 73.841 37.507 274.6 453.34 351.68 232.09 260.3 394.45 260 449 361 236 272 377 1 1 1 1 1 1 40188 4299 1845 4268 6900 9029 9029 1 EIPSLDQEK Unmodified 1057.5292 0.52915466 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 4 0 1 50.318 50.318 3 0.0025478 14391 TMT1-3 84.615 39.862 226.34 192.99 208.13 143.07 159.96 237.42 213 199 210 145 167 227 1 1 1 1 1 1 15861 4300 1797 4269 6901 9030 9030 1 EIPVESIEEVSK Unmodified 1357.6977 0.69767655 225 O60502-4;O60502;O60502-3;O60502-2 MGEA5 Protein O-GlcNAcase yes no 0 0 0 0 0 3 0 1 60.592 60.592 3 0.012588 19420 TMT1-2 56.122 38.258 30.642 44.04 42.469 52.584 33.406 53.413 29 44 44 51 36 51 1 1 1 1 1 1 2771.8 4301 225 4270 6902 9031 9031 1 EIPYTFEDR Unmodified 1168.5401 0.5400537 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 3 0 1 53.972 53.972 2 9.3324E-06 16781 TMT1-2 158.76 82.077 153.69 164.33 179.42 129.99 132.94 158.24 145 167 181 131 138 152 2 2 2 2 2 2 23440 4302 1006 4271 6903 9032;9033 9032 2 EIQEPDPTYEEK Unmodified 1476.662 0.66201933 217 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 0 2 0 1 47.588 47.588 3 0.00076919 13965 TMT1-1 61.212 25.567 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4303 217 4272 6904 9034 9034 1 EIQGFFNIPVDNLR Unmodified 1660.8573 0.85730551 216 O60256-3;O60256;O60256-4;O60256-2 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 0 7 0 1 75.672 75.672 3 0.00029542 23601 TMT1-6 78.191 60.274 61.459 88.565 55.204 43.294 80.159 44.617 58 88 58 44 80 44 2 2 2 2 2 2 10950 4304 216 4273 6905 9035;9036 9035 2 EIQGFFSFPVDNLR Unmodified 1667.8308 0.83075641 1781 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 0 7 0 1 78.77 78.77 3 0.030831 24828 TMT1-6 44.807 24.968 23.303 36.396 20.162 30.103 20.844 22.857 22 36 22 29 22 22 1 1 1 1 1 1 5111.1 4305 1781 4274 6906 9037 9037 1 EIQGHQPR Unmodified 963.48863 0.48862725 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 2 0 1 21.033 21.033 3 0.0056833 3664 TMT1-1 82.279 55.606 23.45 14.141 14.242 22.932 14.101 15.588 22 15 15 22 15 15 1 1 1 1 1 1 1056 4306 1546 4275 6907 9038 9038 1 EIQNLIK Unmodified 856.50182 0.5018177 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 53.257 53.257 2 0.042231 15423 TMT1-5 85.212 6.0956 153.13 246.96 203.11 191.22 172.62 230.66 145 245 210 189 181 221 1 1 1 1 1 1 14931 4307 2382 4276 6908 9039 9039 1 EIQPPYKPK Unmodified 1098.6073 0.6073454 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 1 7 0 1 43.324 43.324 3 0.037491 10881 TMT1-6 56.632 21.454 284.77 308.41 388.1 288.54 456.24 400.59 269 314 389 293 462 388 1 1 1 1 1 1 27012 4308 501 4277 6909 9040 9040 1 EIQTAVR Unmodified 815.45012 0.45011648 239;524;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q99880;Q96A08 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST1H2BL;HIST1H2BA Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 0 3.67 1.97 1 1 1 1 1 1 33.181 33.181 2 3.0542E-12 8311 TMT1-1 182.26 150.68 6309 7912.7 5057.3 7670.1 9397.9 9609.4 5945 7916 5458 7455 9637 9266 9 9 9 9 9 9 2384700 4309 239;524;2498 4278 6910;6911;6912;6913;6914;6915 9041;9042;9043;9044;9045;9046;9047;9048;9049 9042 9 EIQTTTGNQQVLVR Unmodified 1585.8424 0.84238373 2246 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 4 0 1 43.591 43.591 2 3.5998E-16 11733 TMT1-3 143.55 80.748 45.63 50.473 42.746 36.01 42.031 68.091 43 51 44 36 44 65 1 1 1 1 1 1 15775 4310 2246 4279 6916 9050 9050 1 EIQVQHPAAK Unmodified 1119.6037 0.60365701 1178 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 0 0 0 6 0 1 34.215 34.215 3 0.0065492 7887 TMT1-5 48.004 24.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4311 1178 4280 6917 9051 9051 1 EIRPALELLEPIEQK Unmodified 1776.9986 0.99855002 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 1 5 0 1 67.436 67.436 3 1.5915E-07 20819 TMT1-4 109.35 80.024 99.573 114.71 119.4 141.36 125.09 158.46 94 116 123 138 131 152 1 1 1 1 1 1 18760 4312 1217 4281 6918 9052 9052 1 EIRPNSTVQWEEVCR Unmodified 1901.9054 0.90539469 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 4 0 1 46.183 46.183 3 0.0075251 12767 TMT1-3 58.98 54.759 130.66 128.7 112.24 109.79 141.2 158 123 131 116 109 145 152 1 1 1 1 1 1 13488 4313 393 4282 6919 9053 9053 1 EIRPNSTVQWEEVCRPWVSGHR Unmodified 2721.3194 0.31940044 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 2 9 0 1 48.217 48.217 5 1.2008E-09 11117 TMT1-8 75.912 57.124 162.18 226.07 143.18 154.85 146.15 197.3 153 225 152 152 153 189 2 2 2 2 2 2 15733 4314 393 4283 6920 9054;9055 9055 2 EISAQIR Unmodified 815.45012 0.45011648 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 36.702 36.702 2 1.708E-05 9015 TMT1-3 130.77 6.3919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4315 657 4284 6921 9056 9056 1 EISEGDEVEVYSR Unmodified 1510.6787 0.67873203 1235 P51114;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 0 2 0 1 47.559 47.559 3 0.0073581 13933 TMT1-1 59.607 43.47 37.992 58.189 57.502 35.278 34.202 53.39 36 58 58 36 36 51 1 1 1 1 1 1 4218.8 4316 1235 4285 6922 9057 9057 1 EISESTPVEEVEALFK Unmodified 1805.8935 0.89347583 2307 Q92615 LARP4B La-related protein 4B yes yes 0 0 0 0 0 4 0 1 84.041 84.041 3 0.0014993 27611 TMT1-3 63.894 53.836 7.2678 22.554 21.76 14.688 21.81 15.368 7 22 22 15 22 15 1 1 1 1 1 1 2014 4317 2307 4286 6923 9058 9058 1 EISEVFPDQFIHLGGDEVEFK Unmodified 2434.1693 0.16925676 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 5 0 1 77.59 77.59 3 3.1115E-10 24804 TMT1-4 93.572 86.923 30.446 34.861 83.147 26.228 27.289 53.587 29 36 80 29 29 51 1 1 1 1 1 1 10516 4318 539 4287 6924 9059 9059 1 EISFAYEVLSNPEKR Unmodified 1780.8996 0.89956426 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 1 6 0 1 63.003 63.003 3 4.2954E-06 19245 TMT1-5 101.75 75.629 77.448 93.646 68.646 97.224 75.847 98.04 73 94 73 94 80 94 1 1 1 1 1 1 12053 4319 245 4288 6925 9060 9060 1 EISGHTSGIK Unmodified 1027.5298 0.52982336 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 6.5 1.5 1 1 32.78 32.78 3 0.00037649 6869 TMT1-7 70.1 40.753 99.675 99.887 114.83 94.061 97.671 136.86 94 102 116 94 102 131 1 1 1 1 1 1 9560.9 4320 3000 4289 6926;6927 9061;9062 9062 2 EISGHTSGIKK Unmodified 1155.6248 0.62478638 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 1 7 0 1 32.655 32.655 4 0.012761 6650 TMT1-6 57.348 37.587 139.11 127.73 136.12 108.51 133.93 158.21 131 131 138 109 138 152 1 1 1 1 1 1 5602.7 4321 3000 4290 6928 9063 9063 1 EISITHHVK Unmodified 1062.5822 0.58219329 1852 Q15418-4;Q15418;Q15418-2 RPS6KA1 Ribosomal protein S6 kinase alpha-1 yes no 0 0 0 0 0 6 0 1 33.113 33.113 4 0.0076938 7454 TMT1-5 66.27 6.9204 53.456 94.187 133.08 61.513 85.075 90.314 51 94 131 65 87 87 1 1 1 1 1 1 2317.8 4322 1852 4291 6929 9064 9064 1 EISLWFKPEELVDYK Unmodified 1894.9717 0.97166657 846 P22392-2;P22392 NME2 Nucleoside diphosphate kinase B yes no 0 0 0 0 1 7 0 1 77.483 77.483 3 1.0069E-05 24350 TMT1-6 98.654 89.37 160.56 259.17 206.66 142.93 172.12 188.03 152 257 212 145 177 181 1 1 1 1 1 1 88853 4323 846 4292 6930 9065 9065 1 EISNFEYLMFLNTIAGR Unmodified 2016.9979 0.9978981 1229 P50851-2;P50851;Q8NFP9;Q8NFP9-3 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 0 8 0 1 88.994 88.994 3 0.034283 28857 TMT1-7 38.578 21.699 23.415 21.598 13.799 22.83 20.922 30.317 22 22 15 22 22 29 1 1 1 1 1 1 10063 4324 1229 4293 6931 9066 9066 1 EISYAIK Unmodified 822.44872 0.4487195 1226;1591;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM1;DNM3 Dynamin-2;Dynamin-1;Dynamin-3 no no 0 0 0 0 0 6 0 1 48.966 48.966 2 4.5173E-06 13740 TMT1-5 132.29 48.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4325 1226;1591;2942 4294 6932 9067 9067 1 EISYENTQISR Unmodified 1338.6416 0.64155866 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 3 0 1 42.611 42.611 2 1.1118E-06 12340 TMT1-2 141.89 96.206 84.742 140.02 65.871 96.226 137.68 65.361 80 138 73 94 138 65 1 1 1 1 1 1 16651 4326 2789 4295 6933 9068 9068 1 EITALAPSTMK Oxidation (M) 1176.606 0.60602477 1357;1479;1488 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle no no 0 0 1 0 0 6.25 1.79 1 5 5 1 51.79 51.79 2;3 7.5823E-06 13565 TMT1-6 123.01 87.496 10158 15230 11101 9622 10423 16686 9600 15132 11548 9588 10935 15932 27 27 27 27 27 27 3219700 4327 1357;1479;1488 4296 6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945 9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096 9089 218 28 EITALAPSTMK Unmodified 1160.6111 0.61111015 1357;1479;1488 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle no no 0 0 0 0 0 6.53 1.75 1 1 3 7 2 1 53.536 53.536 2;3 1.0912E-11 15666 TMT1-7 172.88 112.76 34826 53587 37130 31113 41347 60680 32914 53154 38731 31202 42887 58030 22 22 22 22 22 22 9522000 4328 1357;1479;1488 4296 6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960 9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118 9116 22 EITENLMATGDLDQDGR Oxidation (M) 1892.8422 0.84218531 690 P13796 LCP1 Plastin-2 yes yes 0 0 1 0 0 2 0 3 60.096 60.096 3 0.00052517 19007 TMT1-1 53.773 36.492 23.16 36 44.408 20.723 35.934 22.427 22 36 44 22 36 22 1 1 1 1 1 1 4143.4 4329 690 4297 6961;6962;6963 9119;9120;9121 9121 128 3 EITENLMATGDLDQDGR Unmodified 1876.8473 0.84727069 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 2.33 0.471 2 1 60.653 60.653 2;3 1.1643E-13 19084 TMT1-1 117.53 90.443 138.24 219.21 204.9 190.22 220.22 155.75 131 218 210 189 224 152 3 3 3 3 3 3 107270 4330 690 4297 6964;6965;6966 9122;9123;9124;9125 9122 4 EITEVGLCQAQDR Unmodified 1517.7144 0.71440603 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 2.33 0.471 2 1 48.616 48.616 2;3 1.1827E-11 14580 TMT1-2 146.79 114.05 184.55 200.34 192.02 159.31 219.5 248.51 174 203 196 160 225 239 4 4 4 4 4 4 71539 4331 772 4298 6967;6968;6969 9126;9127;9128;9129 9128 4 EITFLDAK Unmodified 935.4964 0.49639797 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 5.5 0.5 1 1 60.391 60.391 2 0.0011715 18232 TMT1-5 144.38 70.04 405.41 404.19 408.94 431.13 479.46 630.18 382 412 420 425 498 604 2 2 2 2 2 2 48535 4332 1916 4299 6970;6971 9130;9131 9131 2 EITGIGPSTTTETETIAK Unmodified 1847.9364 0.93640328 276 O75436-2;O75436 VPS26A Vacuolar protein sorting-associated protein 26A yes no 0 0 0 0 0 4 0 1 55.954 55.954 3 1.834E-06 16645 TMT1-3 89.261 70.429 46.232 104.13 76.452 81.434 77.086 83.08 44 102 80 80 80 80 1 1 1 1 1 1 11344 4333 276 4300 6972 9132 9132 1 EIVDPLYGIAEVEIPNIQK Unmodified 2139.1463 0.14633647 2006 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 0 5 0 2 84.557 84.557 3;4 4.4794E-10 27553 TMT1-4 100.77 87.925 85.854 132.5 65.765 108.62 60.115 114.48 81 131 73 104 66 109 3 3 3 3 3 3 13006 4334 2006 4301 6973;6974 9133;9134;9135 9134 3 EIVDSYLPVILDIIK Unmodified 1728.9913 0.99133938 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 7 0.816 1 1 1 100.15 100.15 3 3.6181E-19 32569 TMT1-6 160.27 129.31 240.08 388.7 284.44 229.48 268.15 321.74 227 385 295 229 277 309 6 7 7 6 7 7 40737 4335 538 4302 6975;6976;6977 9136;9137;9138;9139;9140;9141;9142 9140 7 EIVFLIK Unmodified 860.53714 0.53714057 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 0 8 0 1 69.97 69.97 2 0.0104 21470 TMT1-7 108.24 45.524 77.452 70.99 87.297 49.097 76.704 137.46 73 73 87 51 80 131 1 1 1 1 1 1 6295.5 4336 2194 4303 6978 9143 9143 1 EIVHIQIGQCGNQIGAK Unmodified 1863.9625 0.96251564 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 0 0 0 6.5 0.5 1 1 51.939 51.939 3 2.8741E-36 14884 TMT1-5 190.82 175.19 1292 1450.3 1273.9 1268.8 1319.7 1786.3 1218 1465 1316 1253 1376 1711 4 4 4 4 4 4 385810 4337 2650 4304 6979;6980 9144;9145;9146;9147 9144 4 EIVHLQAGQCGNQIGAK Unmodified 1821.9156 0.91556545 1493 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain yes no 0 0 0 0 0 6 0 2 44.687 44.687 3 3.0799E-30 12156 TMT1-5 172.91 0 664.39 925.77 624.18 575.36 613.42 831.03 627 922 655 571 639 796 3 3 3 3 3 3 351350 4338 1493 4305 6981;6982 9148;9149;9150 9150 3 EIVHTFK Unmodified 872.4756 0.47560295 2236 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 0 9 0 1 72.92 72.92 2 0.025542 20784 TMT1-8 91.906 6.3731 85.09 93.495 46.844 51.608 71.385 75.781 80 94 51 51 73 73 1 1 1 1 1 1 26592 4339 2236 4306 6983 9151 9151 1 EIVLADVIDNDSWR Unmodified 1643.8155 0.81550028 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 4.5 0.5 1 1 75.659 75.659 2;3 1.1516E-18 24336 TMT1-3 165.09 137.32 23.3 21.279 33.363 21.306 39.985 25.509 22 22 33 22 40 25 1 1 1 1 1 1 12356 4340 843 4307 6984;6985 9152;9153 9152 2 EIVPVLVSTR Unmodified 1111.6601 0.66010926 2559 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 0 6 0 1 58.485 58.485 2 0.0016677 17498 TMT1-5 71.451 28.976 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4341 2559 4308 6986 9154 9154 1 EIVSDVIDGNEQLSVVR Unmodified 1870.9636 0.96362108 1926 Q32P44-2;Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 yes no 0 0 0 0 0 3 0 1 67.664 67.664 3 9.0778E-19 22187 TMT1-2 131.56 120.08 38.259 51.375 18.512 45.271 33.229 68.342 36 51 22 43 36 65 1 1 1 1 1 1 7053.6 4342 1926 4309 6987 9155 9155 1 EIVSGMK Unmodified 762.39458 0.39457544 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 0 6 0 1 44.057 44.057 2 0.0243 11761 TMT1-5 94.262 35.057 239.07 406.67 231.75 124.98 233.41 346.19 226 401 243 131 240 331 1 1 1 1 1 1 37631 4343 1268 4310 6988 9156 9156 1 EIVTNFLAGFEA Unmodified 1309.6554 0.65541781 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 92.546 92.546 2 2.9491E-08 30477 TMT1-5 137.69 106.32 91.807 154.45 128.6 100.87 156.99 167.15 87 153 132 102 160 161 4 4 4 4 4 4 64661 4344 888 4311 6989;6990 9157;9158;9159;9160 9157 4 EIWDMFGVFFANHPDLR Unmodified 2092.9829 0.98291673 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 9 0 1 91.538 91.538 3 2.8252E-10 27965 TMT1-8 93.152 68.962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4345 281 4312 6991 9161 9161 1 EIWGVEPSDLQIPPPNIPRD Unmodified 2271.1535 0.15354711 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 1 5 0 1 76.461 76.461 3 1.8095E-10 24384 TMT1-4 82.265 57.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4346 648 4313 6992 9162 9162 1 EIWHYQYLSWPDHGVPSEPGGVLSFLDQINQR Unmodified 3766.8168 0.81684427 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 8 0 1 82.964 82.964 4 2.7933E-06 26605 TMT1-7 56.984 55.476 38.154 43.527 42.825 44.436 58.669 29.24 36 44 44 44 59 29 2 2 2 2 2 2 13637 4347 936 4314 6993 9163;9164 9164 2 EIYMTFLSSK Unmodified 1217.6002 0.60021112 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 0 8 0 1 70.038 70.038 3 0.0057313 21522 TMT1-7 70.977 47.741 54.184 57.358 41.909 44.555 55.234 98.628 51 58 44 44 58 94 1 1 1 1 1 1 5736 4348 188 4315 6994 9165 9165 1 EIYNQVNVVLK Unmodified 1317.7293 0.72925145 2751 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 0 6 0 1 60.585 60.585 2 7.6517E-12 18345 TMT1-5 174.98 92.528 23.073 67.056 32.804 45.078 56.273 67.684 22 65 36 44 58 65 1 1 1 1 1 1 6142 4349 2751 4316 6995 9166 9166 1 EIYTHFTCATDTK Unmodified 1585.7083 0.70825802 480;577 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P08754 GNAI2;GNAI1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha no no 0 0 0 0 0 6.67 1.25 1 1 1 46.776 46.776 3 3.3007E-08 12230 TMT1-6 117.07 92.279 322.3 545.54 372.23 345.56 438.73 499.16 305 539 390 344 451 480 2 2 2 2 2 2 47154 4350 480;577 4317 6996;6997;6998 9167;9168;9169 9168 3 EIYTNLGPR Unmodified 1061.5506 0.55055881 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 5 0 1 46.002 46.002 2 7.1044E-05 12426 TMT1-4 119.21 60.606 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4351 2338 4318 6999 9170 9170 1 EKAEGDVAALNR Unmodified 1271.647 0.64697839 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 3.57 1.59 1 1 1 2 1 1 36.702 36.702 2;3 2.8877E-07 8899 TMT1-3 138.45 100.75 8611.7 12092 11070 8169.2 10474 12540 8144 12084 11278 8258 10784 12044 9 9 9 9 9 9 2048600 4352 1486 4319 7000;7001;7002;7003;7004;7005;7006 9171;9172;9173;9174;9175;9176;9177;9178;9179 9175 9 EKAPSIIFIDELDAIGTK Unmodified 1959.0565 0.056458831 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 1 6 0 1 76.936 76.936 3 1.5332E-07 24737 TMT1-5 94.856 78.171 124.4 129.63 81.457 95.904 105.47 120.65 117 131 87 94 109 116 2 2 2 2 2 2 11442 4353 769 4320 7007 9180;9181 9180 2 EKDAVLK Unmodified 801.45962 0.45961853 1898 Q16644 MAPKAPK3 MAP kinase-activated protein kinase 3 yes yes 0 0 0 0 1 5 0 1 37.699 37.699 3 0.032896 9117 TMT1-4 69.598 15.63 194.55 305.5 225.79 205.81 255.07 277.34 184 303 235 205 262 267 1 1 1 1 1 1 10242 4354 1898 4321 7008 9182 9182 1 EKDILVLPLDLTDTGSHEAATK Unmodified 2365.2377 0.23767067 2987 Q9Y394-2;Q9Y394 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 0 0 0 0 1 5.5 0.5 1 1 65.889 65.889 4 0.00022905 20414 TMT1-5 57.068 44.391 169.71 209.43 153.56 137.8 206.61 195.58 160 210 160 138 210 189 2 2 2 2 2 2 22975 4355 2987 4322 7009;7010 9183;9184 9184 2 EKDLEDLFYK Unmodified 1298.6394 0.63943339 1686 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 1 5 0 1 63.442 63.442 3 0.020444 19279 TMT1-4 62.89 38.098 77.004 178.75 71.147 96.514 105.69 113.18 73 174 80 94 109 109 1 1 1 1 1 1 10477 4356 1686 4323 7011 9185 9185 1 EKDLTEVSTLK Unmodified 1261.6765 0.67654718 2221 Q8NEU8-3;Q8NEU8;Q8NEU8-2 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 1 6 0 1 49.285 49.285 3 0.004058 13865 TMT1-5 60.157 28.972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4357 2221 4324 7012 9186 9186 1 EKDNIDITLQWLIQHSK Unmodified 2080.0953 0.095303954 2762;2370 Q9NVJ2;Q96BM9 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A no no 0 0 0 0 1 8 0 3 72.923 72.923 3;4;5 5.3064E-06 22637 TMT1-7 88.19 73.576 559.79 788.8 647.14 572.03 659.8 733.77 529 787 668 570 680 706 4 4 4 4 4 4 74420 4358 2762;2370 4325 7013;7014;7015 9187;9188;9189;9190 9189 4 EKDTAVQGNIR Unmodified 1229.6364 0.6364137 2848 Q9UBV8 PEF1 Peflin yes yes 0 0 0 0 1 4 0 1 31.484 31.484 3 0.0029225 6918 TMT1-3 80.17 37.775 129.99 222.88 145.35 114.11 213.4 212.44 123 220 152 116 216 205 1 1 1 1 1 1 11853 4359 2848 4326 7016 9191 9191 1 EKEDDVPQFTSAGENFDK Unmodified 2054.9069 0.90689406 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 1 4 0 2 53.565 53.565 3;4 4.2342E-10 15645 TMT1-3 106.75 92.587 276.94 434.29 336.16 290.02 367.72 387.12 262 431 348 290 377 373 3 3 3 3 3 3 48835 4360 932 4327 7017;7018 9192;9193;9194 9192 3 EKEELMER Unmodified 1062.5016 0.5015597 894;1015 P26038;P35241;P35241-5;P35241-4 MSN;RDX Moesin;Radixin no no 0 0 0 0 1 3 0 1 36.008 36.008 3 0.023908 9775 TMT1-2 69.276 28.686 235.93 608.21 408.59 426.19 278.72 664.69 225 593 430 417 307 631 1 1 1 1 1 1 118960 4361 894;1015 4328 7019 9195 9195 1 EKELETGPK Unmodified 1029.5342 0.53424004 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 1 4 0 1 36.543 36.543 3 0.00071798 8938 TMT1-3 107.03 63.584 393.31 641.8 438.07 503.01 343.18 847.27 372 635 463 490 378 804 1 1 1 1 1 1 38448 4362 1766 4329 7020 9196 9196 1 EKELGNDAYK Unmodified 1165.5615 0.56151742 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 4 0 1 38.484 38.484 3 0.013651 9726 TMT1-3 66.393 34.914 283.65 407.64 312.39 275.9 322.24 298.88 268 406 324 275 330 289 1 1 1 1 1 1 10366 4363 986 4330 7021 9197 9197 1 EKEPEEELYDLSK Unmodified 1607.7566 0.756648 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 2.6 1.02 1 1 2 1 55.079 55.079 3;4 1.1625E-10 17173 TMT1-2 133.14 97.38 7193.2 9088.9 9289.1 6956 8214 9648.5 6798 9144 9409 7012 8475 9271 11 11 11 11 11 11 1064500 4364 2112 4331 7022;7023;7024;7025;7026 9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208 9203 11 EKFGAVFLWDSGSSVGEITGHNK Unmodified 2464.2023 0.20228822 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 1 8 0 1 65.514 65.514 4 3.4399E-09 19690 TMT1-7 84.318 65.599 115.77 130.08 89.422 87.5 120.25 127.69 109 131 94 87 123 123 1 1 1 1 1 1 34086 4365 250 4332 7027 9209 9209 1 EKGTWVQLK Unmodified 1087.6026 0.60259438 1133 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 0 1 8 0 1 48.111 48.111 3 0.029189 12850 TMT1-7 60.641 12.001 268.23 456.13 337.91 319.6 358.55 492.92 254 451 352 317 373 472 1 1 1 1 1 1 25489 4366 1133 4333 7028 9210 9210 1 EKIDLENTLEQEQEALVNR Unmodified 2270.139 0.13901926 1885 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 0 1 3 0 1 66.752 66.752 4 0.00029035 21850 TMT1-2 63.302 52.313 38.245 43.782 27.241 29.563 27.135 53.592 36 44 29 29 29 51 1 1 1 1 1 1 6657.5 4367 1885 4334 7029 9211 9211 1 EKIEAELQDICNDVLELLDK Unmodified 2386.1938 0.19375695 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 1 6 0 1 102.48 102.48 4 7.1105E-07 33704 TMT1-5 84.035 70.181 35.057 39.769 25.535 22.798 43.555 41.397 33 40 26 23 44 40 4 4 3 4 4 4 835.21 4368 984 4335 7030 9212;9213;9214;9215 9212 4 EKIETELR Unmodified 1016.5502 0.55022446 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 1 3 0.816 1 1 1 38.064 38.064 3 0.0071801 10278 TMT1-1 88.496 14.511 2951.3 3632.6 3493.4 2773.7 3473.6 3420.8 2787 3656 3558 2788 3555 3302 4 4 4 4 4 4 658300 4369 1471 4336 7031;7032;7033 9216;9217;9218;9219 9216 4 EKLCYVALDFEQEMAMVASSSSLEK Unmodified 2864.3282 0.32821829 615 P0CG39 POTEJ POTE ankyrin domain family member J yes yes 0 0 0 0 1 5 0 1 64.201 64.201 4 3.1921E-07 19576 TMT1-4 66.886 54.209 37.919 65.54 63.585 58.849 40.175 91.596 36 65 65 58 44 87 1 1 1 1 1 1 11566 4370 615 4337 7034 9220 9220 1 EKLCYVALDFEQEMATAASSSSLEK Unmodified 2806.3041 0.30411203 1357;1479;2044 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E no no 0 0 0 0 1 5.71 2.12 1 1 2 2 1 81.863 81.863 4;5 2.6224E-24 26612 TMT1-5 118.57 106.25 1260.3 1549.8 1308.7 1304.3 1240.8 1882.3 1189 1557 1355 1286 1303 1799 18 19 19 19 18 19 384280 4371 1357;1479;2044 4338 7035;7036;7037;7038;7039;7040;7041 9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239 9226 19 EKLDSVIEFSIPDSLLIR Unmodified 2073.1358 0.13577179 1303 P54819-2;P54819;P54819-3;P54819-6;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 1 7 0 1 81.351 81.351 3 0.00021393 25881 TMT1-6 72.793 52.439 115.76 122.51 96.733 103.6 112.7 112.98 109 124 101 102 116 109 2 2 2 2 2 2 37131 4372 1303 4339 7042 9240;9241 9241 2 EKLEATINELV Unmodified 1257.6816 0.68163256 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 1 5 0 1 70.358 70.358 3 0.0013265 22028 TMT1-4 89.403 56.179 308.41 386.92 496.8 290.53 412.66 509.5 292 391 494 300 424 489 2 2 2 2 2 2 102910 4373 632 4340 7043 9242;9243 9243 2 EKLEAYQHLFYLLQTNPTYLAK Unmodified 2682.4057 0.40573906 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 9 0 1 76.601 76.601 4 4.2278E-17 22266 TMT1-8 109.08 85.903 61.157 134.13 67.331 74.059 91.277 106.13 58 131 73 73 94 102 1 1 1 1 1 1 11883 4374 1139 4341 7044 9244 9244 1 EKLHIPWGDNSNQQHGDK Unmodified 2101.993 0.99296415 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 1 6 0 1 42.747 42.747 5 0.00020685 11257 TMT1-5 66.827 49.458 83.985 195.11 146.48 131.42 161.37 211.79 80 191 152 131 167 203 1 1 1 1 1 1 9631.9 4375 1773 4342 7045 9245 9245 1 EKLIAPVAEEEATVPNNK Unmodified 1951.0262 0.026221336 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 1 5 0 1 52.735 52.735 4 0.00021677 15081 TMT1-4 69.148 52.533 115.17 199.64 131.91 108.74 134.69 135.8 109 197 138 109 138 131 1 1 1 1 1 1 21925 4376 527 4343 7046 9246 9246 1 EKLILPHVDIQLK Unmodified 1544.929 0.92901389 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 8 0 1 60.698 60.698 4 0.0012122 17777 TMT1-7 75.764 55.179 238.21 319.92 268.9 209.63 205.69 339.51 225 320 276 210 217 324 2 2 2 2 2 2 33040 4377 1164 4344 7047 9247;9248 9247 2 EKLPANQYTWSSR Unmodified 1578.7791 0.77905519 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 7 0 1 44.386 44.386 3 0.00014701 11298 TMT1-6 94.532 82.556 76.818 178.23 102.98 86.987 104.56 159.05 73 174 109 87 109 152 1 1 1 1 1 1 15339 4378 934 4345 7048 9249 9249 1 EKLPGELEPVQATQNK Unmodified 1779.9367 0.93667805 302 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 1 5 0 1 48.921 48.921 3 6.2695E-08 13580 TMT1-4 90.453 71.621 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4379 302 4346 7049 9250 9250 1 EKLQEEMLQR Unmodified 1302.6602 0.66018561 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 4.5 0.5 1 1 43.057 43.057 3 0.0002025 11233 TMT1-4 112.94 58.398 440.43 984.04 524.22 604.57 772.13 830.77 418 961 566 595 792 800 2 2 2 2 2 2 84006 4380 575 4347 7050;7051 9251;9252 9252 2 EKNNVEQDLK Unmodified 1215.6095 0.60953025 1098 P42566;P42566-2 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 0 0 0 1 4 0 1 38.58 38.58 3 0.0059786 9774 TMT1-3 77.305 26.087 108.14 114.09 122.2 78.429 91.883 82.658 102 116 123 80 94 80 1 1 1 1 1 1 7357.5 4381 1098 4348 7052 9253 9253 1 EKNQPEVDMSDR Unmodified 1446.6409 0.64090673 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 0 0 1 2.5 0.5 1 1 34.344 34.344 3 3.4752E-08 8813 TMT1-1 114.56 91.678 231.02 288.95 241.43 164.47 195.15 311.03 218 290 247 167 204 297 2 2 2 2 2 2 28603 4382 1851 4349 7053;7054 9254;9255;9256 9254 3 EKPDDPLNYFLGGCAGGLTLGAR Unmodified 2420.1794 0.17944429 2127 Q86Y39;Q86Y39-2 NDUFA11 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 yes no 0 0 0 0 1 8 0 1 75.809 75.809 3 0.00047743 23771 TMT1-7 47.564 32.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4383 2127 4350 7055 9257 9257 1 EKPPITVVGDVGGR Unmodified 1422.7831 0.78307794 216;1781 O60256-3;O60256;O60256-4;O60256-2;Q14558;Q14558-2 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 no no 0 0 0 0 1 6 0 1 47.112 47.112 3 0.001345 13005 TMT1-5 59.884 38.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4384 216;1781 4351 7056 9258 9258 1 EKPQSTISGLLGPTLYAEVGDIIK Unmodified 2528.3738 0.37377023 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 7 0 1 81.535 81.535 4 3.2491E-13 25953 TMT1-6 98.7 78.444 137.25 187.14 217.62 142.24 173.96 257.27 130 188 218 145 181 246 2 2 2 2 2 2 36504 4385 666 4352 7057 9259;9260 9260 2 EKPTTALLDK Unmodified 1114.6234 0.6233894 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 1 7 0 1 47.191 47.191 3 0.03424 12429 TMT1-6 55.776 25.384 153.84 190.65 131.63 122.8 201.59 148.82 145 191 138 123 203 145 1 1 1 1 1 1 11248 4386 1655 4353 7058 9261 9261 1 EKPVCGTTYK Unmodified 1181.5751 0.575059 1777 Q14444-2;Q14444 CAPRIN1 Caprin-1 yes no 0 0 0 0 1 6 0 1 36.187 36.187 3 0.0092411 8671 TMT1-5 56.02 41.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4387 1777 4354 7059 9262 9262 1 EKPYFPIPEEYTFIQNVPLEDR Unmodified 2723.3483 0.34828376 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 6 0 1 75.045 75.045 4 3.9894E-06 24003 TMT1-5 71.656 59.46 361.25 407.8 434.95 381.65 471.22 570.72 341 413 442 381 486 548 2 2 2 2 2 2 104880 4388 1545 4355 7060 9263;9264 9263 2 EKQLAAENR Unmodified 1057.5516 0.55162144 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3.33 1.7 1 1 1 28.555 28.555 3 0.020535 5905 TMT1-3 64.82 32.491 274.57 346.22 267.72 245.1 241.47 407.78 259 347 278 243 255 389 3 3 3 3 3 3 136350 4389 1019 4356 7061;7062;7063 9265;9266;9267 9266 3 EKQPVAGSEGAQYR Unmodified 1518.7427 0.74266969 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 1 4 0 1 31.384 31.384 3 3.9038E-07 6871 TMT1-3 107.34 78.527 217.37 279.92 199.69 216.4 239.39 262.87 205 280 210 213 247 253 1 1 1 1 1 1 35661 4390 2857 4357 7064 9268 9268 1 EKVEELIK Unmodified 986.56481 0.56481189 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 1 5 0 1 48.894 48.894 3 0.0079509 13535 TMT1-4 86.898 23.082 115 217.54 143.92 155.27 121.74 237.44 109 214 152 152 131 226 1 1 1 1 1 1 11748 4391 1574 4358 7065 9269 9269 1 EKVELAAECCR Unmodified 1363.6224 0.6224199 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 1 4 0 1 38.052 38.052 3 0.0044846 9542 TMT1-3 76.588 67.767 145.9 230.99 169.08 200.27 206.26 213.71 138 229 178 196 213 206 1 1 1 1 1 1 22605 4392 2325 4359 7066 9270 9270 1 EKVESELR Unmodified 988.51892 0.51892433 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 1 3 0.816 1 1 1 34.118 34.118 3 0.026303 8746 TMT1-1 67.334 19.051 948 1461 1194.9 1049.2 1155.2 1538.3 897 1452 1233 1045 1201 1474 4 4 4 4 4 4 141830 4393 909 4360 7067;7068;7069 9271;9272;9273;9274 9271 4 EKVEVQLPELFHK Unmodified 1594.8719 0.87189295 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 1 7 0 1 59.652 59.652 4 0.00023518 17306 TMT1-6 88.282 59.306 153.23 297.95 143.63 170.43 188.29 259 145 292 157 167 196 248 1 1 1 1 1 1 22338 4394 1691 4361 7070 9275 9275 1 EKVSSIDLEIDSLSSLLDDMTK Unmodified 2437.2146 0.21455197 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 1 6 0 2 91.104 91.104 4;5 7.1748E-13 29974 TMT1-5 100.19 88.111 199.54 215.41 184.74 130.84 129.17 267.08 188 218 189 132 138 254 4 4 4 4 4 4 23109 4395 1881 4362 7071;7072 9276;9277;9278;9279 9276 4 EKVTSGSTTTTR Unmodified 1266.6416 0.64155866 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 6 0 1 25.459 25.459 3 0.00014396 4576 TMT1-5 100.02 55.998 104.35 80.163 66.523 62.835 51.378 64.626 98 83 69 62 54 62 1 1 1 1 1 1 7005.1 4396 437 4363 7073 9280 9280 1 EKYDTDFYILDK Unmodified 1548.7348 0.73479034 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 5 0 1 61.325 61.325 3 0.0052183 18450 TMT1-4 69.92 58.228 68.813 94.09 76.947 81.271 84.166 90.34 65 94 80 80 87 87 1 1 1 1 1 1 8162.3 4397 714 4364 7074 9281 9281 1 EKYEITEQR Unmodified 1194.5881 0.58806652 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 1 4 0 1 35.267 35.267 3 0.005092 8443 TMT1-3 65.842 19.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4398 1573 4365 7075 9282 9282 1 EKYIDQEELNK Unmodified 1407.6882 0.6881745 545;561;1955 P08238;P07900;P07900-2;Q14568;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 1 4.5 0.5 1 1 45.04 45.04 3 0.00060257 12351 TMT1-3 96.591 44.985 222.16 329.77 254.02 240.61 291.43 390.37 210 328 264 239 302 374 2 2 2 2 2 2 38568 4399 561;545;1955 4366 7076;7077 9283;9284 9283 2 ELAAIAFVK Unmodified 960.56442 0.56441796 1997 Q5W0V3;Q86V87 FAM160B1;FAM160B2 Protein FAM160B1;Protein FAM160B2 yes no 0 0 0 0 0 8 0 1 66.167 66.167 2 0.0093296 19975 TMT1-7 60.118 60.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4400 1997 4367 7078 9285 9285 1 ELAALFYSVVVSTVSGNELK Unmodified 2125.1307 0.13068641 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 9 0 1 106.6 106.6 3 0.0030999 33299 TMT1-8 44.587 26.449 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4401 1994 4368 7079 9286 9286 1 ELAALPK Unmodified 740.44324 0.44324019 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 6 0 1 49.085 49.085 2 0.0011274 13786 TMT1-5 110.36 49.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4402 2362 4369 7080 9287 9287 1 ELAAQLEK Unmodified 900.49165 0.49164694 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes yes 0 0 0 0 0 5 0 1 48.495 48.495 2 0.020044 13417 TMT1-4 88.948 31.24 145.75 247.83 181.01 128.45 209.76 177.37 138 245 187 131 212 172 1 1 1 1 1 1 24279 4403 993 4370 7081 9288 9288 1 ELADESQTLK Unmodified 1132.5612 0.56118307 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 3 0 1 46.221 46.221 2 0.0034517 13770 TMT1-2 96.113 30.648 54.065 73.214 48.576 43.566 86.706 66.816 51 73 51 44 87 65 1 1 1 1 1 1 6980 4404 2934 4371 7082 9289 9289 1 ELADYLCEDAQQLSLEDTFSTMK Unmodified 2706.2041 0.20406364 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 5 0 2 85.942 85.942 4;5 2.4916E-06 28052 TMT1-4 68.552 55.623 31.681 51.425 42.031 52.34 47.767 92.445 30 51 44 51 51 88 2 2 2 2 2 2 6844.5 4405 1916 4372 7083;7084 9290;9291 9290 2 ELAEDDSILK Unmodified 1131.5659 0.5659341 1337 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 0 2.33 0.471 2 1 55.712 55.712 2;3 1.1445E-06 17410 TMT1-2 163.32 131.83 559.57 783.89 687.48 571.86 657.4 864.95 529 783 705 572 682 829 5 5 5 5 5 5 120710 4406 1337 4373 7085;7086;7087 9292;9293;9294;9295;9296 9295 5 ELAEDGYSGVEVR Unmodified 1422.6627 0.66268803 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 2 0 1 48.375 48.375 2 7.2173E-59 14237 TMT1-1 230.41 173.86 115.24 214.94 107.15 134.01 147.93 142.89 109 211 117 131 152 138 2 2 2 2 2 2 47925 4407 861 4374 7088 9297;9298 9297 2 ELAEEAAR Unmodified 887.43486 0.43486035 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 33.148 33.148 2 0.0029292 8243 TMT1-1 134.15 30.243 54.099 57.121 56.435 58.846 62.969 67.493 51 58 58 58 65 65 1 1 1 1 1 1 5923.9 4408 1833 4375 7089 9299 9299 1 ELAEQELEK Unmodified 1087.5397 0.53971935 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 48.623 48.623 3 0.00034629 14530 TMT1-2 79.974 26.223 68.638 109.79 92.945 41.068 78.942 83.027 65 109 94 44 80 80 1 1 1 1 1 1 11225 4409 1833 4376 7090;7091 9300;9301 9301 2 ELAEQLGLSTGEK Unmodified 1373.7038 0.70382456 302 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 0 5 0 1 58.717 58.717 3 0.0082409 17429 TMT1-4 58.32 21.896 139.18 174.33 84.927 126.16 171.07 149.69 131 174 94 123 174 145 1 1 1 1 1 1 9499.9 4410 302 4377 7092 9302 9302 1 ELAEQTLNNIK Unmodified 1271.6721 0.67213051 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 5 0 1 55.394 55.394 3 0.00019293 16132 TMT1-4 100.55 75.376 68.875 102.9 59.094 105.84 112.85 105.51 65 102 65 102 116 102 1 1 1 1 1 1 11917 4411 2291 4378 7093 9303 9303 1 ELAFQISK Unmodified 934.51238 0.51238239 1738;40 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 7 0 1 58.25 58.25 2 0.0051305 16747 TMT1-6 120.12 56.639 293.46 312.41 368.05 392.3 291.3 435.14 277 318 375 384 310 416 2 2 2 2 2 2 39947 4412 40;1738 4379 7094 9304;9305 9304 2 ELAGHTGYLSCCR Unmodified 1522.6657 0.66568169 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 0 6 1 1 1 37.045 37.045 3 1.6866E-28 8764 TMT1-4 193 182.65 161.05 311.45 259.46 271.68 307.13 287.58 153 307 269 268 315 278 2 2 2 2 2 2 54614 4413 1453 4380 7095;7096 9306;9307 9306 2 ELAILLGMLDPAEKDEK Unmodified 1883.9914 0.99141573 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 1 7 0.816 1 1 1 84.92 84.92 4 9.0093E-08 27254 TMT1-6 101.05 85.42 657.5 842.75 590.04 579.98 592.43 1009.7 620 843 619 573 625 963 5 5 5 5 5 5 107960 4414 945 4381 7097;7098;7099 9308;9309;9310;9311;9312 9310 5 ELAKVEEEIQTLSQVLAAK Unmodified 2098.1522 0.15215013 1321 P55327-8;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3 TPD52 Tumor protein D52 yes no 0 0 0 0 1 7 0 1 90.599 90.599 4 5.8712E-05 29277 TMT1-6 68.653 54.492 30.619 59.085 33.637 36.257 57.741 36.728 29 58 36 36 58 36 1 1 1 1 1 1 4536.9 4415 1321 4382 7100 9313 9313 1 ELALGQDR Unmodified 900.46649 0.46649483 948 P30046;P30046-2;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 0 2 0 1 40.613 40.613 2 0.0015271 11204 TMT1-1 87.308 28.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4416 948 4383 7101 9314 9314 1 ELALGSNK Unmodified 830.44978 0.44978213 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 6 0 2 44.038 44.038 2 0.00085828 11737 TMT1-5 112.84 28.598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4417 681 4384 7102;7103 9315;9316 9315 2 ELANELR Unmodified 843.44503 0.4450311 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 2.5 0.5 1 1 40.321 40.321 2 0.0022166 11417 TMT1-2 143.11 0 1677.2 2425 2073.5 1636.3 2839.5 2176.8 1586 2418 2126 1659 2858 2118 3 3 3 3 3 3 489720 + 4418 32;554 4385 7104;7105 9317;9318;9319 9319 3 ELANTIK Unmodified 787.44397 0.44396847 1512 P80511 S100A12 Protein S100-A12;Calcitermin yes yes 0 0 0 0 0 5.5 0.5 1 1 43.128 43.128 2 0.0039055 11283 TMT1-4 138.26 28.399 674.01 1476.2 885 706.21 1140.1 1035.6 640 1444 932 714 1155 1002 3 3 3 3 3 3 109120 4419 1512 4386 7106;7107 9320;9321;9322 9320 3 ELAPAVSVLQLFCSSPK Unmodified 1844.9706 0.97062071 3047;2838 Q9Y678;Q9UBF2;Q9UBF2-2 COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma-2 no no 0 0 0 0 0 9 0 1 85.57 85.57 4 0.0005331 25787 TMT1-8 58.159 34.554 53.96 65.368 72.842 43.775 56.83 83.658 51 66 73 45 59 80 3 3 3 3 3 3 6693 4420 3047;2838 4387 7108 9323;9324;9325 9324 3 ELAPLFEELR Unmodified 1215.6499 0.6499385 2860 Q9UHA4-2;Q9UHA4 LAMTOR3 Ragulator complex protein LAMTOR3 yes no 0 0 0 0 0 4.5 0.5 1 1 71.944 71.944 2 0.00069204 22902 TMT1-3 109.66 59.057 115.71 152.58 80.471 112.4 103.39 159.08 109 152 88 109 109 152 2 2 2 2 2 2 25828 4421 2860 4388 7109;7110 9326;9327 9326 2 ELAPLQELIEK Unmodified 1281.718 0.71801807 2083 Q9H8S9;Q7L9L4;Q7L9L4-2 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B yes no 0 0 0 0 0 5 0 1 73.841 73.841 3 7.6826E-05 23378 TMT1-4 103.76 34.045 222.81 251.73 209.42 229.54 207.36 294.69 210 254 218 225 218 282 2 2 2 2 2 2 40331 4422 2083 4389 7111 9328;9329 9329 2 ELAQEQAR Unmodified 943.47231 0.47230849 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 28.262 28.262 2 0.030859 6338 TMT1-1 81.163 37.429 46.539 57.498 64.387 50.709 63.6 60.013 44 58 65 51 65 58 1 1 1 1 1 1 5667.2 4423 1833 4390 7112 9330 9330 1 ELAQQIEEETIK Unmodified 1429.73 0.73003931 2544 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 0 2 0 1 61.63 61.63 3 0.0022215 19472 TMT1-1 72.891 52.51 23.261 44.913 19.998 22.317 28.531 22.638 22 44 22 22 29 22 1 1 1 1 1 1 2673.9 4424 2544 4391 7113 9331 9331 1 ELAQQIQK Unmodified 956.5291 0.52909508 1358;1765 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 5.5 0.5 1 1 43.209 43.209 2 8.5691E-05 11428 TMT1-5 127.02 21.886 275.4 296.92 349.45 298.31 291.39 436.21 260 302 353 297 306 417 1 1 1 1 1 1 43505 4425 1358;1765 4392 7114;7115 9332;9333 9333 2 ELAQQVQQVAAEYCR Unmodified 1791.8574 0.85738187 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 5 0 1 62.337 62.337 2 0.00015337 18851 TMT1-4 89.507 71.434 30.892 28.544 13.685 15.179 21.274 30.307 29 29 15 15 22 29 1 1 1 1 1 1 6338.5 4426 764 4393 7116 9334 9334 1 ELAQTTR Unmodified 817.42938 0.42938104 1232 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 3 0 1 27.356 27.356 2 0.014877 6285 TMT1-2 101.6 19.296 161.57 141.11 136.28 84.193 147.58 219.65 152 145 138 87 152 210 1 1 1 1 1 1 16196 4427 1232 4394 7117 9335 9335 1 ELASALK Unmodified 730.4225 0.42250475 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 6 0 1 46.8 46.8 2 0.0089004 12895 TMT1-5 114.6 0 1819.6 3094.4 1742.1 1454.5 2397 2637.1 1720 3051 1850 1467 2442 2538 1 1 1 1 1 1 180110 4428 534 4395 7118 9336 9336 1 ELASQPDVDGFLVGGASLKPEFVDIINAK Unmodified 3028.5757 0.57571751 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 1 7 0.707 2 4 2 84.407 84.407 4;5 6.2444E-65 27144 TMT1-6 175.76 154.51 1477.6 2034.1 1502.9 1393.1 1710.9 1953.1 1395 2029 1566 1386 1761 1878 16 16 16 16 16 16 540190 4429 1352 4396 7119;7120;7121;7122;7123;7124;7125;7126 9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352 9346 16 ELAVETK Unmodified 788.42798 0.42798405 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 4 0 1 42.521 42.521 2 0.010017 11308 TMT1-3 109.86 40.948 184.62 248.04 138.89 170.5 199.53 236.29 174 247 150 167 206 227 1 1 1 1 1 1 18547 4430 1129 4397 7127 9353 9353 1 ELAVQIYEEAR Unmodified 1319.6721 0.67213051 82 O00571-2;O00571;O15523-2;O15523;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 3 0 1 58.93 58.93 2 0.0011876 18757 TMT1-2 99.522 70.435 46.671 57.864 41.906 44.791 42.69 37.158 44 58 44 44 44 36 1 1 1 1 1 1 6403.7 4431 82 4398 7128 9354 9354 1 ELCQGLGQPGSVLR Unmodified 1512.7719 0.77186132 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 5.5 0.5 1 1 52.723 52.723 2;3 5.906E-14 15138 TMT1-4 133.48 89.986 216.31 244.42 227.25 180.02 226.92 248.3 204 247 232 181 233 239 2 2 2 2 2 2 39761 4432 681 4399 7129;7130 9355;9356 9355 2 ELCQLLLEGLEGVLR Unmodified 1740.9444 0.94440596 1344 P57764 GSDMD Gasdermin-D yes yes 0 0 0 0 0 7 0 1 99.311 99.311 3 0.0057928 32277 TMT1-6 55.011 34.629 7.3474 15.221 14.593 15.406 6.3643 7.2804 7 15 15 15 7 7 1 1 1 1 1 1 2189.3 4433 1344 4400 7131 9357 9357 1 ELCSLASDLSQPDLVYK Unmodified 1936.9452 0.94519382 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 5 0 1 73.545 73.545 3 9.8095E-08 23234 TMT1-4 76.151 47.518 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4434 1994 4401 7132 9358 9358 1 ELDALDANDELTPLGR Unmodified 1740.853 0.853008 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 2.33 0.471 2 1 66.938 66.938 2;3 2.9233E-19 21441 TMT1-1 157.22 136 55.078 103.19 33.279 75.942 40.949 76.65 52 101 37 72 45 73 3 3 2 3 3 3 33715 4435 1619 4402 7133;7134;7135 9359;9360;9361 9359 3 ELDALGHELPVLAPQWEGYDELQTDGNR Unmodified 3164.5051 0.50507176 1329 P55957;P55957-2;P55957-3 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 4.5 0.5 1 1 77.524 77.524 4 3.298E-12 25056 TMT1-3 88.541 86.43 46.515 49.877 74.799 21.552 73.8 45.664 44 51 73 22 73 44 2 2 2 1 2 1 24050 4436 1329 4403 7136;7137 9362;9363 9362 2 ELDDISQEIAQLQR Unmodified 1656.8319 0.83187862 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 3 0 1 72.643 72.643 3 1.9887E-10 24109 TMT1-2 122.52 96.31 39.316 51.257 21.289 22.231 29.033 38.614 37 51 22 22 30 37 2 2 1 2 2 2 7356.5 4437 2835 4404 7138 9364;9365 9364 2 ELDELMASLSDFK Unmodified 1496.7069 0.70686103 1169 P49023-4;P49023-2;P49023;P49023-3 PXN Paxillin yes no 0 0 0 0 0 6 0 1 87.873 87.873 3 0.00043746 29003 TMT1-5 79.466 57.593 54.353 50.272 19.531 22.059 43.736 37.128 51 51 22 22 44 36 1 1 1 1 1 1 4799.1 4438 1169 4405 7139 9366 9366 1 ELDESLQVAER Unmodified 1287.6307 0.63065962 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 2.5 0.5 1 1 49.469 49.469 2;3 1.1028E-07 14737 TMT1-1 148.28 85.873 146.21 164.92 173.98 106.4 125.85 182.96 138 167 175 109 131 175 2 2 2 2 2 2 55555 4439 639 4406 7140;7141 9367;9368 9367 2 ELDGERER Unmodified 1002.473 0.47303677 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 1.5 0.5 1 1 23.083 23.083 3 0.0059385 4375 TMT1-1 91.069 48.042 184.72 181.38 179.79 143.62 162.52 253.33 174 185 183 144 170 242 2 2 2 2 2 2 18597 4440 1486 4407 7142;7143 9369;9370 9370 2 ELDGLWSFR Unmodified 1121.5506 0.55055881 559 P08236;P08236-2;P08236-3 GUSB Beta-glucuronidase yes no 0 0 0 0 0 6 0 1 69.851 69.851 2 0.0019859 21946 TMT1-5 108.81 54.095 77.315 101.91 84.053 80.295 113.51 120.42 73 102 87 80 116 116 1 1 1 1 1 1 18681 4441 559 4408 7144 9371 9371 1 ELDLNSVLLK Unmodified 1142.6547 0.65468953 83 O00584 RNASET2 Ribonuclease T2 yes yes 0 0 0 0 0 6.5 0.5 1 1 71.51 71.51 2 5.2037E-05 22574 TMT1-5 146.11 79.836 76.738 139.16 149.51 163.95 107.54 182.42 73 138 153 160 116 174 2 2 2 2 2 2 15926 4442 83 4409 7145;7146 9372;9373 9372 2 ELDLSNNCLGDAGILQLVESVR Unmodified 2414.2111 0.21113835 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 5 0 2 89.174 89.174 3;4 1.8061E-17 29358 TMT1-4 108.25 101.22 57.248 76.76 51.632 42.697 65.132 56.552 54 76 54 43 66 54 3 2 3 3 3 2 30506 4443 681 4410 7147;7148 9374;9375;9376 9376 3 ELDLYDNQIK Unmodified 1249.619 0.6190323 1856 Q15435-5;Q15435-4;Q15435-3;Q15435-2;Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 0 4 0 1 58.213 58.213 3 0.0038733 17511 TMT1-3 53.028 29.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4444 1856 4411 7149 9377 9377 1 ELDNLQYR Unmodified 1049.5142 0.5141733 2630;2082 Q9H2K8;Q7L7X3;Q7L7X3-3;Q9UL54-2;Q9UL54-4;Q9UL54;Q7L7X3-2;Q9UL54-3 TAOK3;TAOK1;TAOK2 Serine/threonine-protein kinase TAO3;Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO2 no no 0 0 0 0 0 3 0 1 45.161 45.161 2 0.003668 13317 TMT1-2 130.28 67.069 122.84 159.64 138.72 178.93 158.6 228.93 116 160 145 174 167 219 1 1 1 1 1 1 43896 4445 2630;2082 4412 7150 9378 9378 1 ELDPTNMTYITNQAAVYFEK Unmodified 2347.1042 0.10421366 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 6 0 2 82.109 82.109 3 2.1665E-09 26827 TMT1-5 80.156 65.234 61.62 65.268 47.922 68.091 63.313 45.097 58 66 51 66 65 44 2 2 2 2 2 2 6734.4 4446 986 4413 7151;7152 9379;9380;9381 9381 3 ELDQWIEQLNECK Unmodified 1703.7825 0.78248559 1482 P67775;P67775-2 PPP2CA Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform yes no 0 0 0 0 0 5 0 1 75.788 75.788 3 4.884E-06 24093 TMT1-4 109.6 75.812 92.467 92.61 70.056 65.273 84.902 90.319 87 94 73 65 87 87 1 1 1 1 1 1 18537 4447 1482 4414 7153 9382 9382 1 ELDRDTVFALVNYIFFK Unmodified 2089.0884 0.088427662 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 1 9 0 2 98.538 98.538 3;4 3.3834E-10 30539 TMT1-8 98.281 67.319 92.84 145.63 142.86 108.38 119.28 158.63 88 145 145 109 124 152 3 3 3 3 3 3 14557 4448 407 4415 7154;7155 9383;9384;9385 9385 3 ELDRNELFEK Unmodified 1291.6408 0.64083038 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 1 4 0 1 49.445 49.445 3 0.031299 14109 TMT1-3 57.293 24.346 129.82 180.32 210.04 128.18 132.22 181.71 123 181 210 131 138 174 1 1 1 1 1 1 24406 4449 220 4416 7156 9386 9386 1 ELDSGLAESVSTLIWAAPR Unmodified 2014.0371 0.037120373 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 0 6.5 0.5 1 1 86.321 86.321 3 1.7821E-32 27726 TMT1-6 144.08 119.86 15.89 14.517 22.206 14.523 29.146 15.158 15 15 22 15 29 15 1 1 1 1 1 1 6732.7 4450 1292 4417 7157;7158 9387;9388 9388 2 ELDSITPEVLPGWK Unmodified 1582.8243 0.82427405 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 6 0 2 73.941 73.941 3;4 2.493E-07 23612 TMT1-5 105.95 83.418 153.22 226.7 205.47 189.87 179.06 258.19 145 226 211 188 188 247 2 2 2 2 2 2 35173 4451 1913 4418 7159;7160 9389;9390 9390 2 ELDTLNNEIVDLQR Unmodified 1670.8475 0.84752869 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 2.5 0.5 1 1 65.812 65.812 2;3 4.8104E-18 21431 TMT1-2 158.01 115.04 50.841 84.213 40.105 49.257 53.306 57.109 48 83 44 47 55 55 3 3 3 2 3 3 12740 4452 1098 4419 7161;7162 9391;9392;9393 9393 3 ELDTVTLEDIKEHVK Unmodified 1767.9254 0.92544466 162 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 0 1 6 0 1 61.899 61.899 4 0.00086074 18820 TMT1-5 71.692 49.537 115.3 182.74 123.56 149.09 108.22 182.4 109 181 131 145 116 174 1 1 1 1 1 1 11827 4453 162 4420 7163 9394 9394 1 ELEAENYHDIK Unmodified 1359.6307 0.63065962 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 42.943 42.943 3 0.0030483 12507 TMT1-2 74.76 42.431 84.96 61.836 95.412 48.435 86.189 75.359 80 65 94 51 87 73 1 1 1 1 1 1 12942 4454 1546 4421 7164 9395 9395 1 ELEAFIADLDK Unmodified 1262.6394 0.63943339 2655 Q9H4X1-2;Q9H4X1 RGCC Regulator of cell cycle RGCC yes no 0 0 0 0 0 4.5 0.5 1 1 79.228 79.228 3 0.00019293 25380 TMT1-4 100.55 57.042 221.99 296.92 309.77 199.23 222.56 349.69 210 298 312 203 233 334 3 3 3 3 3 3 56233 4455 2655 4422 7165;7166 9396;9397;9398 9397 3 ELEALDEVFTK Unmodified 1292.65 0.64999808 2920 Q9UMX5 NENF Neudesin yes yes 0 0 0 0 0 4 0 1 72.98 72.98 3 0.00055629 23261 TMT1-3 91.313 57.423 115.86 91.491 106.24 126.29 96.739 120.9 109 95 109 123 102 116 2 2 2 2 2 2 11732 4456 2920 4423 7167 9399;9400 9399 2 ELEAQLDDAVAEASK Unmodified 1587.7628 0.76279601 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 2.5 0.5 1 1 66.612 66.612 3 1.0633E-10 21356 TMT1-1 101.53 78.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4457 3034 4424 7168;7169 9401;9402 9401 2 ELEAVCQDVLSLLDNYLIK Unmodified 2234.1504 0.15043557 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 7 0 1 107.89 107.89 3 4.2402E-10 33857 TMT1-6 100.97 83.049 8.4642 10.952 10.852 7.857 12.774 13.493 8 11 11 8 13 13 2 2 2 2 2 2 2920.5 4458 1411 4425 7170 9403;9404 9404 2 ELEDAKK Unmodified 831.4338 0.43379771 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 4 0 1 35.499 35.499 3 0.031185 8594 TMT1-3 68.422 22.704 531.92 531.57 680.66 509.42 744.17 584.25 502 544 682 516 753 568 2 2 2 2 2 2 47480 4459 228 4426 7171 9405;9406 9406 2 ELEDATETADAMNR Unmodified 1564.6675 0.66751541 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0.816 1 1 1 48.057 48.057 2;3 1.7328E-112 14161 TMT1-1 274.2 248.09 254.34 387.08 387.07 257.84 289.95 532.19 241 386 391 262 306 507 4 4 4 4 4 4 187340 4460 1019 4427 7172;7173;7174 9407;9408;9409;9410 9408 4 ELEDATETADAMNR Oxidation (M) 1580.6624 0.66243003 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 2 0 4 43.882 43.882 3 0.0010965 13681 TMT1-1 77.192 67.447 221.85 311.65 320.5 278.71 263.39 333.6 210 312 326 277 275 320 5 5 5 5 5 5 42147 4461 1019 4427 7175;7176;7177;7178 9411;9412;9413;9414;9415;9416 9415 179 6 ELEDLLSPLEELVK Unmodified 1625.8764 0.8763692 1050 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 0 0 0 0 0 5 0 1 96.008 96.008 3 0.00017644 31806 TMT1-4 79.875 67.042 39.354 51.363 14.817 16.124 29.57 31.136 37 51 15 15 30 30 2 2 1 1 2 2 3772.3 4462 1050 4428 7179 9417;9418 9417 2 ELEDLQK Unmodified 873.44436 0.4443624 113 O14933 UBE2L6 Ubiquitin/ISG15-conjugating enzyme E2 L6 yes yes 0 0 0 0 0 4 0 1 47.095 47.095 2 0.0039633 13129 TMT1-3 84.916 13.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4463 113 4429 7180 9419 9419 1 ELEDYIDNLLVR Unmodified 1490.7617 0.76167379 2052 Q6WKZ4-3;Q6WKZ4;Q7L804;Q7L804-2;Q6WKZ4-1 RAB11FIP1;RAB11FIP2 Rab11 family-interacting protein 1;Rab11 family-interacting protein 2 yes no 0 0 0 0 0 4 0 1 84.217 84.217 3 0.0060749 27653 TMT1-3 45.257 31.594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4464 2052 4430 7181 9420 9420 1 ELEEARK Unmodified 873.4556 0.45559579 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 3 0 1 30.603 30.603 3 0.033003 7545 TMT1-2 66.993 6.2053 160.95 209.53 182.92 208.15 150.51 212.1 152 210 190 203 160 203 1 1 1 1 1 1 26891 4465 3010;3014 4431 7182 9421 9421 1 ELEEDFIK Unmodified 1021.4968 0.4967919 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 3 0.816 1 1 1 58.752 58.752 2 0.0011715 18416 TMT1-1 144.38 44.187 2743.1 3815.5 2999 2548.2 3082.8 3712.3 2591 3807 3101 2548 3181 3565 6 6 6 6 6 6 455990 4466 1747 4432 7183;7184;7185 9422;9423;9424;9425;9426;9427 9422 6 ELEEDFIKSELK Unmodified 1478.7504 0.75044041 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 1 4 0 1 62.87 62.87 3 1.1902E-05 19313 TMT1-3 112.43 82.449 188.45 259.4 207.59 167.19 158.03 291.84 178 259 214 167 168 278 1 1 1 1 1 1 26282 4467 1747 4433 7186 9428 9428 1 ELEEEITLR Unmodified 1130.5819 0.58191851 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 2 0 1 54.164 54.164 2 0.0020829 16513 TMT1-1 106.68 25.767 54.14 49.68 55.815 82.783 70.758 52.347 51 51 58 80 73 51 1 1 1 1 1 1 15684 4468 251 4434 7187 9429 9429 1 ELEEEVNNFQK Unmodified 1377.6412 0.64122431 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 2.5 0.5 1 1 55.05 55.05 3 7.82E-09 16957 TMT1-1 119.53 86.12 46.543 57.509 63.702 66.056 63.407 45.095 44 58 65 65 65 44 1 1 1 1 1 1 11007 4469 2757 4435 7188;7189 9430;9431 9430 2 ELEEEWVK Unmodified 1060.5077 0.50769094 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 2.67 0.471 1 2 56.585 56.585 2;3 0.0054177 17830 TMT1-2 83.265 65.533 178.14 215.96 174.16 200 204.54 203.1 168 217 182 196 211 196 3 3 3 3 3 3 20608 4470 1744 4436 7190;7191;7192 9432;9433;9434 9434 3 ELEEIVQPIISK Unmodified 1396.7813 0.7813466 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 5.5 0.5 1 1 72.057 72.057 3 1.4513E-07 22706 TMT1-4 117.86 83.175 185.63 756.12 801.46 473.29 771.6 686.87 181 735 803 490 781 665 3 3 3 3 3 3 141210 4471 640 4437 7193;7194 9435;9436;9437 9436 3 ELEEWYAR Unmodified 1094.5033 0.50327426 596 P09496-2;P09496-4;P09496-3;P09496;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 0 3 0 1 53.45 53.45 2 0.0031265 16617 TMT1-2 133.12 105.86 56.614 628.76 411.76 371.92 364.48 493.82 58 601 431 369 381 473 1 1 1 1 1 1 75667 4472 596 4438 7195 9438 9438 1 ELEFLSMANVELSSLAR Unmodified 1907.9663 0.96626362 2534 Q9BTT0;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 0 6 0 1 87.768 87.768 3 0.0010918 29006 TMT1-5 63.337 44.504 30.669 36.559 44.336 20.733 35.661 60.81 29 37 44 22 37 58 2 2 2 2 2 2 3428.1 4473 2534 4439 7196 9439;9440 9440 2 ELEFYLR Unmodified 968.49673 0.49673232 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 5 0 1 60.303 60.303 2 0.0022326 17999 TMT1-4 143.02 87.578 138.77 193.69 138.02 147.08 169.01 242.49 131 193 145 145 176 232 1 1 1 1 1 1 42572 4474 1417 4440 7197 9441 9441 1 ELEGVITK Unmodified 887.4964 0.49639797 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 5 0 1 51.589 51.589 2 0.0063949 14616 TMT1-4 105.78 10.686 186.58 247.37 170.78 208.3 180.91 270.93 176 247 181 203 191 259 1 1 1 1 1 1 23821 4475 237 4441 7198 9442 9442 1 ELEKPIFCLK Unmodified 1275.6897 0.68969482 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 1 8 0 1 59.901 59.901 3 9.4041E-05 17474 TMT1-7 125.74 65.222 612.82 961.84 966.04 728.28 930.21 1118.3 581 958 979 735 958 1074 2 2 2 2 2 2 74283 4476 2066 4442 7199 9443;9444 9443 2 ELELLDR Unmodified 886.476 0.47599688 1344 P57764 GSDMD Gasdermin-D yes yes 0 0 0 0 0 2 0 1 54.176 54.176 2 0.0079971 16558 TMT1-1 76.774 5.4784 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4477 1344 4443 7200 9445 9445 1 ELELVYAR Unmodified 991.53385 0.53384611 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 4 0 1 54.173 54.173 2 0.011012 15877 TMT1-3 98.458 16.153 99.499 177.11 79.04 89.047 70.909 252.75 94 174 87 87 80 239 1 1 1 1 1 1 35379 4478 1796 4444 7201 9446 9446 1 ELEQIFCQFDSK Unmodified 1542.7024 0.70244436 1566 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 76.202 76.202 3 0.02518 24462 TMT1-5 50.155 36.125 45.477 65.158 55.983 59.139 48.81 52.973 43 65 58 58 51 51 1 1 1 1 1 1 5394.8 4479 1566 4445 7202 9447 9447 1 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK Unmodified 3054.4869 0.48691928 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 7 0 1 75.397 75.397 4 1.7357E-06 23588 TMT1-6 62.858 50.424 53.904 87.876 63.249 34.491 57.822 36.726 51 87 65 36 58 36 1 1 1 1 1 1 56137 4480 618 4446 7203 9448 9448 1 ELESHSSWYAPEALQK Unmodified 1873.8846 0.88464248 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 5 0 1 54.004 54.004 3 8.6185E-12 15580 TMT1-4 124.16 114.63 77.294 85.663 101.3 79.242 114.88 82.002 73 87 102 80 116 80 1 1 1 1 1 1 14142 4481 1724 4447 7204 9449 9449 1 ELESQISELQEDLESER Unmodified 2032.9437 0.9436735 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.33 0.471 2 1 73.942 73.942 2;3 1.1218E-30 24074 TMT1-1 179.41 151.36 91.782 139.27 153.21 79.008 144.15 151.09 87 139 153 81 146 145 5 5 6 4 5 5 176450 4482 1019 4448 7205;7206;7207 9450;9451;9452;9453;9454;9455 9453 6 ELETGPK Unmodified 772.39668 0.39668393 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 4 0 1 37.525 37.525 2 0.027841 9310 TMT1-3 91.626 45.256 200.72 175.69 200.92 136.76 111.5 316.62 189 181 202 138 123 300 1 1 1 1 1 1 20009 4483 1766 4449 7208 9456 9456 1 ELETQLLEQCTVDTSVAK Unmodified 2063.0093 0.0092506424 2793 Q9NZ32 ACTR10 Actin-related protein 10 yes yes 0 0 0 0 0 4 0 1 65.422 65.422 3 2.05E-10 20333 TMT1-3 82.482 66.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4484 2793 4450 7209 9457 9457 1 ELETSLR Unmodified 846.4447 0.44469675 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 2 0 1 39.968 39.968 2 0.0021345 10920 TMT1-1 143.56 102.7 68.59 102.1 107.62 86.262 128.39 135.98 65 102 109 87 131 131 1 1 1 1 1 1 13572 4485 356 4451 7210 9458 9458 1 ELETVAAHQFPEVR Unmodified 1624.8209 0.82092001 2352 Q969V3-2;Q969V3 NCLN Nicalin yes no 0 0 0 0 0 4 0 1 50.447 50.447 3 8.0246E-05 14422 TMT1-3 87.363 78.978 68.743 117.64 68.67 65.351 85.155 82.85 65 116 73 65 87 80 1 1 1 1 1 1 11896 4486 2352 4452 7211 9459 9459 1 ELETVCNDVLSLLDK Unmodified 1746.871 0.87096625 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 5.5 0.5 2 2 88.793 88.793 2;3;4 5.6272E-11 29246 TMT1-4 125.67 105.01 229.76 289.57 272.91 185.74 296.73 400.88 217 291 277 189 305 384 5 5 5 4 5 5 51011 4487 1588 4453 7212;7213;7214;7215 9460;9461;9462;9463;9464 9461 5 ELETVLADEPGLLGPK Unmodified 1679.8982 0.89816728 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 4.5 0.5 1 1 73.923 73.923 3 5.9465E-09 23659 TMT1-3 112.72 91.77 100.43 130.23 142.72 131.22 125.81 150.98 95 131 145 130 131 145 2 2 2 2 2 2 21703 4488 1314 4454 7216;7217 9465;9466 9465 2 ELEVAEGGK Unmodified 930.46583 0.46582612 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 2.5 0.5 1 1 44.107 44.107 2 4.7413E-05 12780 TMT1-2 120.12 47.572 61.361 72.105 85.534 88.988 53.448 91.217 58 73 87 87 58 87 1 1 1 1 1 1 13299 4489 1891 4455 7218;7219 9467;9468 9468 2 ELEVAEGGKAELER Unmodified 1528.7733 0.77330111 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 1 2 0 1 47.569 47.569 3 0.0026899 13967 TMT1-1 67.136 36.138 46.604 73.869 39.502 52.908 25.549 68.561 44 73 43 51 29 65 1 1 1 1 1 1 4224.8 4490 1891 4456 7220 9469 9469 1 ELEVQHPAAK Unmodified 1120.5877 0.58767259 1232 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 4 0 1 35.496 35.496 3 0.002189 8570 TMT1-3 82.417 49.328 389.54 545.49 613.54 483.31 369.22 633.33 369 547 619 482 395 604 2 2 2 2 2 2 80769 4491 1232 4457 7221 9470;9471 9471 2 ELFEPWNNLPK Unmodified 1385.698 0.69795133 2686 Q9HC16 APOBEC3G DNA dC->dU-editing enzyme APOBEC-3G yes yes 0 0 0 0 0 7 0 1 71.712 71.712 3 0.021028 22093 TMT1-6 52.837 25.739 92.417 92.469 78.673 42.047 72.118 67.232 87 94 80 44 73 65 1 1 1 1 1 1 9631.4 4492 2686 4458 7222 9472 9472 1 ELFPIAAQVDKEHLFPAAQVK Unmodified 2350.2685 0.26851729 737 P16219 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 1 8 0 1 68.472 68.472 4 1.4556E-05 20833 TMT1-7 70.897 54.669 99.211 161.2 140.81 132.58 117.63 143.75 94 160 145 131 123 138 1 1 1 1 1 1 15926 4493 737 4459 7223 9473 9473 1 ELFSNLQEFAGPSGK Unmodified 1622.794 0.79403656 2660 Q9H8H3 METTL7A Methyltransferase-like protein 7A yes yes 0 0 0 0 0 7 0 2 70.186 70.186 2;4 4.751E-17 21488 TMT1-6 152 115.16 75.903 155 96.067 79.284 129.23 121.03 72 152 101 80 131 117 2 2 2 2 2 2 17600 4494 2660 4460 7224;7225 9474;9475 9474 2 ELFSPLHALNFGIGGDTTR Unmodified 2044.0378 0.037789075 1495 P68402;P68402-3;P68402-2;P68402-4 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes no 0 0 0 0 0 8 0 1 72.347 72.347 3 2.9784E-23 22394 TMT1-7 131.31 90.813 61.619 64.185 49.036 44.539 33.52 60.872 58 65 51 44 36 58 1 1 1 1 1 1 29244 4495 1495 4461 7226 9476 9476 1 ELFVQSEIFPLETPAFAIK Unmodified 2178.1613 0.16125825 1209 P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 0 0 7 0 1 89.686 89.686 3 0.0081188 28980 TMT1-6 45.696 27.995 38.175 58.697 26.358 29.32 42.852 53.143 36 58 29 29 44 51 1 1 1 1 1 1 6208.1 4496 1209 4462 7227 9477 9477 1 ELGAFGLQVPSELGGVGLCNTQYAR Unmodified 2635.3064 0.30643572 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 78.77 78.77 4 3.448E-05 24809 TMT1-6 55.526 47.993 15.611 45.041 43.218 36.114 34.97 29.916 15 44 44 36 36 29 1 1 1 1 1 1 7816.6 4497 1194 4463 7228 9478 9478 1 ELGDHVTNLR Unmodified 1152.5887 0.58873523 453 P02794 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 0 0 0 0 0 4 0 1 36.225 36.225 3 0.0057447 8801 TMT1-3 70.942 29.954 84.656 108.48 107.14 86.704 106.4 105.7 80 109 109 87 109 102 1 1 1 1 1 1 11748 4498 453 4464 7229 9479 9479 1 ELGEYFLFDPK Unmodified 1356.6602 0.66016884 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 2 76.104 76.104 2;3 1.3097E-05 24400 TMT1-5 123.75 82.209 291.43 403.55 270.54 248.36 291.69 463.91 275 402 284 247 305 443 3 3 3 3 3 3 85738 4499 228 4465 7230;7231 9480;9481;9482 9482 3 ELGEYGLQAYTEVK Unmodified 1598.7828 0.78280317 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 63.969 63.969 2 0.00087062 19501 TMT1-4 80.469 70.515 23.071 67.05 33.177 36.729 34.135 53.392 22 65 36 36 36 51 1 1 1 1 1 1 6883.1 4500 483 4466 7232 9483 9483 1 ELGGESNFGDALLDAGESMK Unmodified 2038.9154 0.91535026 2501 Q99961 SH3GL1 Endophilin-A2 yes yes 0 0 0 0 0 4 0 1 74.829 74.829 3 2.337E-13 24005 TMT1-3 106.49 88.039 46.734 42.931 43.909 19.916 80.464 66.994 44 44 44 22 80 65 1 1 1 1 1 1 8296.5 4501 2501 4467 7233 9484 9484 1 ELGGFTEK Unmodified 879.4338 0.43379771 963 P30536 TSPO Translocator protein yes yes 0 0 0 0 0 5 0 1 48.872 48.872 2 0.0028666 13519 TMT1-4 134.48 52.695 129.27 264.04 232.17 271.53 169.5 305.37 123 260 241 264 184 291 1 1 1 1 1 1 50433 4502 963 4468 7234 9485 9485 1 ELGITALHIK Unmodified 1093.6495 0.64954457 1423 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 0 7 0 1 55.297 55.297 3 0.0025168 15589 TMT1-6 79.974 49.404 139.1 142.8 125.56 155.15 186.04 253.73 131 145 131 152 193 243 1 1 1 1 1 1 25864 4503 1423 4469 7235 9486 9486 1 ELGIWEPLAVK Unmodified 1253.702 0.70197407 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6.5 0.5 1 1 73.318 73.318 3 0.0010731 22687 TMT1-6 85.958 58.337 145.73 211.09 214.68 175.05 182.36 212.26 138 211 218 175 189 204 3 3 3 3 3 3 47061 4504 1178 4470 7236;7237 9487;9488;9489 9488 3 ELGLAESDIIDIPQLFK Unmodified 1900.0193 0.019345044 2915 Q9UM07 PADI4 Protein-arginine deiminase type-4 yes yes 0 0 0 0 0 6 0 1 89.376 89.376 3 1.7362E-14 29467 TMT1-5 102.38 76.421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4505 2915 4471 7238 9490 9490 1 ELGLDEGVDSLK Unmodified 1273.6402 0.64016167 2286 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 0 4 0 1 60.975 60.975 3 2.4172E-08 18577 TMT1-3 128.28 87.693 69.053 63.459 62.504 82.393 70.262 67.285 65 65 65 80 73 65 1 1 1 1 1 1 10914 4506 2286 4472 7239 9491 9491 1 ELGLETYK Unmodified 951.49131 0.49131259 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 5 0 1 52.298 52.298 2 0.003928 14877 TMT1-4 128.69 0 201.58 208.51 207.58 234.49 124.38 298.13 190 212 214 228 139 283 1 1 1 1 1 1 33025 4507 908 4473 7240 9492 9492 1 ELGLVDGQELAVADVTTPQTVLFK Unmodified 2542.353 0.35303478 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 6 0 1 84.086 84.086 4 1.313E-06 27519 TMT1-5 68.552 56.238 53.867 87.775 69.408 66.405 84.85 90.321 51 87 72 66 87 87 2 2 2 2 2 2 6456.5 4508 2241 4474 7241 9493;9494 9493 2 ELGNDAYK Unmodified 908.42396 0.42396131 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 4 0 1 40.529 40.529 2 0.0037589 10531 TMT1-3 78.149 61.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4509 986 4475 7242 9495 9495 1 ELGNIIQK Unmodified 913.52328 0.52328142 1284 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 0 6 0 1 53.184 53.184 2 0.0060766 15399 TMT1-5 110.12 75.01 161.14 249.98 117.55 188.23 137.85 150.64 152 247 131 181 145 145 1 1 1 1 1 1 15990 4510 1284 4476 7243 9496 9496 1 ELGPYSSK Unmodified 879.4338 0.43379771 761 P17655 CAPN2 Calpain-2 catalytic subunit yes yes 0 0 0 0 0 5 0 1 42.745 42.745 2 0.0058762 11110 TMT1-4 112.84 47.804 240.46 341.64 233.41 199.44 162.59 329.02 227 340 244 198 175 313 1 1 1 1 1 1 38226 4511 761 4477 7244 9497 9497 1 ELGQTLIDGGILDDIISEK Unmodified 2028.0627 0.062666421 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 5 0 1 89.145 89.145 3 4.5966E-07 29330 TMT1-4 88.176 69.14 23.248 28.69 35.813 29.19 19.823 53.8 22 29 36 29 22 51 1 1 1 1 1 1 5109.9 4512 1138 4478 7245 9498 9498 1 ELGSLPLPLSTSEQR Unmodified 1625.8625 0.86245047 2128 Q86Y82 STX12 Syntaxin-12 yes yes 0 0 0 0 0 6 0 1 65.522 65.522 3 0.0010823 20302 TMT1-5 67.326 44.334 30.689 44.169 34.534 36.204 57.744 36.728 29 44 36 36 58 36 1 1 1 1 1 1 9079.4 4513 2128 4479 7246 9499 9499 1 ELGSLPQEAFEK Unmodified 1346.6718 0.67179615 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 5 0 1 61.04 61.04 2 0.0006029 18303 TMT1-4 97.463 47.748 46.783 34.431 42.965 52.564 32.894 68.351 44 36 44 51 36 65 1 1 1 1 1 1 7499.8 4514 2944 4480 7247 9500 9500 1 ELGTGQFGVVK Unmodified 1133.6081 0.60807369 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 7 0 1 55.042 55.042 3 5.7261E-05 15516 TMT1-6 81.525 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4515 1601 4481 7248 9501 9501 1 ELGTVMR Unmodified 804.41637 0.41637351 621 P0DP25;P0DP24;P0DP23;P27482;P02585 CALML3;TNNC2 Calmodulin-like protein 3;Troponin C, skeletal muscle yes no 0 0 0 0 0 3.33 1.7 1 1 1 40.822 40.822 2 0.0099055 10210 TMT1-4 110.34 45.79 566.21 1374.2 1055.6 887.51 1304.4 1339 540 1344 1091 892 1330 1291 4 4 4 4 4 4 293230 4516 621 4482 7249;7250;7251 9502;9503;9504;9505 9504 4 ELGVGIALR Unmodified 926.55492 0.5549159 1554 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 0 0 6 0 1 55.341 55.341 2 0.0059152 16272 TMT1-5 96.19 69.967 224.9 419.96 257.92 250 186.55 325.14 213 413 273 246 200 310 1 1 1 1 1 1 38925 4517 1554 4483 7252 9506 9506 1 ELGVHYSR Unmodified 959.48248 0.48247924 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 31.869 31.869 3 0.0012438 7082 TMT1-3 105.52 41.256 37.675 96.16 78.708 42.478 49.063 67.89 36 94 80 44 51 65 1 1 1 1 1 1 6705 4518 156 4484 7253 9507 9507 1 ELHEQLVALDK Unmodified 1293.6929 0.69286595 870 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 0 4 0 1 49.897 49.897 3 0.0014201 14314 TMT1-3 82.362 49.756 77.309 101.89 85.109 56.614 90.76 144.52 73 102 87 58 94 138 1 1 1 1 1 1 11740 4519 870 4485 7254 9508 9508 1 ELHEVCHLLEQER Unmodified 1690.8097 0.80970339 1839 Q15276-2;Q15276 RABEP1 Rab GTPase-binding effector protein 1 yes no 0 0 0 0 0 3 0 1 46.737 46.737 3 0.0019986 13996 TMT1-2 69.92 58.306 23.051 51.885 49.313 59.266 63.206 60.024 22 51 51 58 65 58 1 1 1 1 1 1 4888.2 4520 1839 4486 7255 9509 9509 1 ELHINLIPNK Unmodified 1189.6819 0.68190733 545 P07900;P07900-2;Q14568 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 0 7 0 1 55.481 55.481 3 0.0019951 15747 TMT1-6 83.862 62.96 277.55 355.05 300.09 283.55 419.08 301.45 262 356 310 283 423 294 2 2 2 2 2 2 97915 4521 545 4487 7256 9510;9511 9511 2 ELHINLIPNKQDR Unmodified 1588.8685 0.8685389 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 5 2.83 1 2 49.261 49.261 2;4 0.00029945 13017 TMT1-6 86.291 82.048 261.29 361.1 322.07 269.45 227.7 349.55 247 361 330 268 241 334 3 3 3 3 3 3 222490 4522 545 4488 7257;7258;7259 9512;9513;9514 9513 3 ELHIQGNR Unmodified 965.50428 0.50427732 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 4.4 2.24 1 2 1 1 28.755 28.755 2;3 0.0019366 6193 TMT 1-phospho 99.802 60.78 627.88 758.74 770.57 676.02 725.28 941.9 593 765 785 673 754 903 7 7 7 7 7 7 226660 4523 1851 4489 7260;7261;7262;7263;7264 9515;9516;9517;9518;9519;9520;9521 9515 7 ELHLFLK Unmodified 898.52764 0.52763852 1551 Q01432-3;Q01432;Q01432-5;Q01432-4;Q01432-6 AMPD3 AMP deaminase 3 yes no 0 0 0 0 0 8 0 1 56.465 56.465 3 0.019292 16136 TMT1-7 68.422 35.529 38.043 58.33 48.836 59.591 47.47 91.387 36 58 51 58 51 87 1 1 1 1 1 1 3796 4524 1551 4490 7265 9522 9522 1 ELHSEFSEVMNEIWASDQIR Unmodified 2419.1114 0.1114243 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 5 0 1 78.026 78.026 4 4.3734E-07 24917 TMT1-4 84.581 68.459 38.287 35.265 27.369 38.159 34.619 37.388 36 36 29 37 36 36 1 1 1 1 1 1 6273.2 4525 1076 4491 7266 9523 9523 1 ELHSELDNLSDEYLSCLR Unmodified 2192.0056 0.005562248 2948 Q9Y228;Q9Y228-2 TRAF3IP3 TRAF3-interacting JNK-activating modulator yes no 0 0 0 0 0 4 0 1 67.747 67.747 3 3.6506E-25 21250 TMT1-3 127.88 117.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4526 2948 4492 7267 9524 9524 1 ELIALQEDKHNYETTAK Unmodified 2002.0007 0.0007348666 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-7;Q14BN4-6 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 1 5 0 1 48.926 48.926 4 0.0090285 13627 TMT1-4 50.938 35.346 99.665 99.858 116.61 54.124 123.36 81.76 94 102 116 58 123 80 1 1 1 1 1 1 12162 4527 1806 4493 7268 9525 9525 1 ELIEAQELAR Unmodified 1170.6245 0.62445203 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-4;Q14BN4-5 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 2.5 0.5 1 1 52.216 52.216 2 0.0077249 15842 TMT1-1 87.568 12.727 92.104 131.53 98.113 87.43 96.416 151.82 87 131 102 87 101 145 2 2 2 2 2 2 19249 4528 1806 4494 7269;7270 9526;9527 9526 2 ELIECAR Unmodified 889.43275 0.43275186 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 2 0.816 1 1 1 39.176 39.176 2 6.8404E-05 10687 TMT1-1 158.12 33.23 4035.4 5100.5 5445.5 4020.6 4855.2 6967.4 3815 5135 5500 4059 5047 6666 4 4 4 4 4 4 966200 4529 3010;3014 4495 7271;7272;7273 9528;9529;9530;9531 9529 4 ELIEIISGAAALD Unmodified 1313.7078 0.70784731 1038 P36542 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 0 0 0 0 0 5 0.816 1 1 1 96.17 96.17 2 2.6421E-10 31961 TMT1-4 135.79 95.789 64.518 118.12 57.032 34.959 62.03 74.982 61 116 61 36 63 72 4 4 4 3 3 3 42841 4530 1038 4496 7274;7275;7276 9532;9533;9534;9535;9536 9534 5 ELIEQLR Unmodified 899.50763 0.50763136 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 4 0 1 49.681 49.681 2 0.007249 14186 TMT1-3 129.68 5.0884 660 593.19 742.34 533.12 625.29 846.68 622 611 744 539 649 811 2 2 2 2 2 2 108150 4531 986 4497 7277 9537;9538 9538 2 ELIFEETAR Unmodified 1106.5608 0.56078914 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 0 2.5 0.5 1 1 54.826 54.826 2 0.0027279 17064 TMT1-2 103.19 58.232 154.94 196.06 121.86 164.72 154.12 165.1 146 196 131 160 160 159 2 2 2 2 2 2 27847 4532 930 4498 7278;7279 9539;9540 9540 2 ELIIGDR Unmodified 814.45487 0.45486751 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 46.537 46.537 2 0.014822 12829 TMT1-3 101.64 27.228 1895.9 2952.9 2198.1 1941.9 2527.2 2944.7 1793 2930 2284 1940 2598 2830 2 2 2 2 2 2 334520 4533 888 4499 7280;7281 9541;9542 9542 2 ELIPEATEK Unmodified 1028.539 0.53899107 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 4 0 1 50.341 50.341 2 0.018786 14380 TMT1-3 78.516 26.521 91.37 220.15 146.3 100.95 96.841 151.81 87 215 152 102 102 145 1 1 1 1 1 1 21988 4534 853 4500 7282 9543 9543 1 ELIPEFFYLPEFLVNR Unmodified 2025.0612 0.061150279 2483 Q99698 LYST Lysosomal-trafficking regulator yes yes 0 0 0 0 0 8 0 1 99.787 99.787 3 0.0094915 32608 TMT1-7 35.091 34.772 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4535 2483 4501 7283 9544 9544 1 ELIPTEEALR Unmodified 1169.6292 0.62920306 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 54.907 54.907 2 1.2705E-06 17092 TMT1-2 162.88 67.346 184.01 316.48 184.39 198.6 246.44 294.65 174 312 197 196 254 283 3 3 3 3 3 3 52324 4536 1833 4502 7284;7285 9545;9546;9547 9546 3 ELIRDEGVTSLYK Unmodified 1521.8039 0.80387296 202 O43772 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes yes 0 0 0 0 1 5 0 1 53.277 53.277 3 0.0016781 15260 TMT1-4 76.262 41.884 137.93 314.41 175.42 213.67 287.11 186.89 131 307 189 210 290 183 1 1 1 1 1 1 23817 4537 202 4503 7286 9548 9548 1 ELISFLSEPEILVK Unmodified 1615.9073 0.9072754 13 A6NDU8 C5orf51 UPF0600 protein C5orf51 yes yes 0 0 0 0 0 6.5 0.5 1 1 86.279 86.279 3 2.4068E-10 28334 TMT1-5 121.04 93.631 70.035 79.321 64.378 43.142 117.31 59.547 66 80 66 45 116 59 3 3 3 3 3 3 10110 4538 13 4504 7287;7288 9549;9550;9551 9549 3 ELISMIQVVK Unmodified 1158.6682 0.6682311 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 8 0 1 72.61 72.61 3 0.00010863 22456 TMT1-7 113.62 75.319 139.12 135.31 128.04 109.53 104.84 120.66 131 138 131 109 109 116 1 1 1 1 1 1 21353 4539 570 4505 7289 9552 9552 1 ELISNASDALDK Unmodified 1274.6354 0.63541065 708;561 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 0 0 0 0 0 4 0.816 1 1 1 56.511 56.511 2;3 8.374E-15 16502 TMT1-4 179.6 113.17 862.58 1026.3 1133.3 793.54 1172.7 1219.1 815 1037 1141 808 1196 1175 4 4 4 4 4 4 243900 4540 561;708 4506 7290;7291;7292 9553;9554;9555;9556;9557 9556 5 ELISNASDALDKIR Unmodified 1543.8206 0.82058566 708;561 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 0 0 0 0 1 6 0 1 59.385 59.385 3 4.944E-22 17894 TMT1-5 170.42 129.87 535.05 891.79 569.47 455.26 489.62 911.32 506 881 597 456 518 868 2 2 2 2 2 2 115690 4541 561;708 4507 7293 9558;9559 9559 2 ELISNASDALEK Unmodified 1288.6511 0.65106071 1659 Q12931-2;Q12931 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 0 4 0 1 56.776 56.776 3 7.5554E-06 16969 TMT1-3 111.79 72.168 61.588 80.29 40.493 44.62 56.294 67.684 58 80 44 44 58 65 1 1 1 1 1 1 5320.2 4542 1659 4508 7294 9560 9560 1 ELISNSSDALDK Unmodified 1290.6303 0.63032527 545 P07900;P07900-2;Q14568 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 0 3 0.816 1 1 1 52.478 52.478 3 4.05E-09 15225 TMT1-3 141.38 131.85 705.86 879.79 725.57 688.38 849.84 892.51 666 883 751 684 872 860 4 4 4 4 4 4 197130 4543 545 4509 7295;7296;7297 9561;9562;9563;9564 9564 4 ELISNSSDALDKIR Unmodified 1559.8155 0.81550028 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 5 0 1 53.843 53.843 3 2.1264E-10 15516 TMT1-4 125.36 96.38 251.33 571.55 375.66 265.94 302.53 551.02 239 559 391 269 319 525 1 1 1 1 1 1 37893 4544 545 4510 7298 9565 9565 1 ELISWGAPGSADSTR Unmodified 1545.7423 0.74233534 1578 Q03518 TAP1 Antigen peptide transporter 1 yes yes 0 0 0 0 0 5 0 1 58.029 58.029 2 0.00035775 17161 TMT1-4 84.352 55.182 30.689 44.17 34.515 36.649 34.139 53.392 29 44 36 36 36 51 1 1 1 1 1 1 5580.7 4545 1578 4511 7299 9566 9566 1 ELITLAK Unmodified 786.48511 0.485105 644 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 0 7 0 1 56.312 56.312 2 0.014822 16041 TMT1-6 101.64 22.046 122.94 145.88 133.69 140.38 132.17 166.79 116 147 138 138 138 160 1 1 1 1 1 1 10150 4546 644 4512 7300 9567 9567 1 ELIYNQK Unmodified 906.48108 0.48108226 1500 Q5TFQ8;P78324-4;P78324;P78324-2;Q9P1W8-3;Q9P1W8-4;Q9P1W8-2;Q9P1W8;O00241-2;O00241 SIRPB1;SIRPA;SIRPG Signal-regulatory protein beta-1 isoform 3;Tyrosine-protein phosphatase non-receptor type substrate 1;Signal-regulatory protein gamma;Signal-regulatory protein beta-1 yes no 0 0 0 0 0 6 0 1 44.96 44.96 2 0.0035209 12153 TMT1-5 86.472 43.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4547 1500 4513 7301 9568 9568 1 ELKEECEEK Unmodified 1192.5282 0.52816838 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 2.5 0.5 1 1 35.889 35.889 3 0.0058161 9606 TMT1-2 79.659 47.591 363.17 514.97 381.28 421.78 483.4 466.97 343 513 400 415 496 451 2 2 2 2 2 2 25836 4548 251 4514 7302;7303 9569;9570 9570 2 ELKELFEPYGAVYQINVLR Unmodified 2280.2154 0.21541909 348 O95319-5;O95319-2;O95319;O95319-4;O95319-3 CELF2 CUGBP Elav-like family member 2 yes no 0 0 0 0 1 8 0 1 77.355 77.355 3 0.0049114 24371 TMT1-7 51.786 42.689 38.159 51.098 35.481 29.056 27.965 30.116 36 51 37 29 29 29 1 1 1 1 1 1 5152.2 4549 348 4515 7304 9571 9571 1 ELKELIQK Unmodified 999.59645 0.59644637 510 P06703 S100A6 Protein S100-A6 yes yes 0 0 0 0 1 7 0 1 52.527 52.527 3 0.0019188 14473 TMT1-6 117.31 27.426 251.73 457 224.97 208.14 191.81 441.18 238 449 243 206 207 419 1 1 1 1 1 1 42444 4550 510 4516 7305 9572 9572 1 ELKESLSEVEEK Unmodified 1418.7141 0.7140549 3041 Q9Y608-4;Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 1 4 0 1 52.191 52.191 3 0.0063382 15128 TMT1-3 67.234 36.163 235.19 347.69 211.46 223.16 249.66 411.81 222 345 225 220 262 393 1 1 1 1 1 1 26143 4551 3041 4517 7306 9573 9573 1 ELKGELYCLPCHDK Unmodified 1760.8226 0.82257627 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 1 6.5 0.5 1 1 48.417 48.417 4 7.3796E-06 13578 TMT1-5 101.15 77.105 3800.1 4831.3 4995.6 3167.7 4385.8 5603.5 3592 4860 5033 3246 4516 5374 3 3 3 3 3 3 411690 4552 1149;2097 4518 7307;7308 9574;9575;9576 9575 3 ELKTDSSPNQAR Unmodified 1344.6634 0.66335673 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 1 5 0 1 29.937 29.937 3 0.030612 6078 TMT1-4 53.051 28.258 46.431 80.942 62.622 58.759 48.021 76.448 44 80 65 58 51 73 1 1 1 1 1 1 5258.4 4553 901 4519 7309 9577 9577 1 ELLAVACEQFLGK Unmodified 1476.7647 0.76465068 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 76.287 76.287 2 3.5635E-10 23906 TMT1-6 132.32 97.791 38.292 43.911 19.304 37.551 34.354 45.924 36 44 22 36 36 44 1 1 1 1 1 1 5790.9 4554 1767 4520 7310;7311 9578;9579 9578 2 ELLEAVDAR Unmodified 1014.5346 0.53457439 939 P29590-14;P29590-10;P29590-4;P29590-12;P29590-2;P29590-5;P29590-9;P29590-13;P29590-3;P29590-8;P29590-11;P29590 PML Protein PML yes no 0 0 0 0 0 2.5 0.5 1 1 53.462 53.462 2 0.001865 16332 TMT1-1 111.46 16.605 99.279 177.57 115.62 141.65 121.9 220.38 94 175 123 138 130 210 2 2 2 2 2 2 21344 4555 939 4521 7312;7313 9580;9581 9580 2 ELLEIVKK Unmodified 970.60628 0.60628277 973 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 1 7 0 1 57.349 57.349 3 0.010825 16422 TMT1-6 78.934 36.539 145.82 248.03 168.78 208.4 181.86 243.19 138 245 179 203 191 233 1 1 1 1 1 1 11460 4556 973 4522 7314 9582 9582 1 ELLENPVQPINDMSYFGCLDSVMENSK Oxidation (M) 3144.409 0.40898781 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 5.5 0.5 1 1 85.141 85.141 4 0.00091344 26753 TMT1-4 45.07 37.794 78.952 28.478 51.432 36.881 26.286 68.54 74 29 51 37 29 65 2 1 2 2 2 2 11782 4557 3010 4523 7315;7316 9583;9584 9583 330;331 2 ELLENPVQPINDMSYFGCLDSVMENSK Unmodified 3128.4141 0.41407319 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.25 0.433 3 1 87.572 87.572 3;4;5 3.0049E-08 28864 TMT1-5 73.805 58.759 201.57 208.46 210.46 121.18 154.5 242.9 190 212 212 125 161 232 5 5 5 5 5 5 81768 4558 3010 4523 7317;7318;7319;7320 9585;9586;9587;9588;9589 9588 5 ELLFHPALFEVPSLK Unmodified 1738.9658 0.96579333 2870 Q9UHY1 NRBP1 Nuclear receptor-binding protein yes yes 0 0 0 0 0 9 0 1 75.736 75.736 3 1.2749E-07 21923 TMT1-8 102.38 70.316 100.06 84.782 62.125 58.665 54.585 98.646 94 87 65 58 58 94 1 1 1 1 1 1 11304 4559 2870 4524 7321 9590 9590 1 ELLGWVSTLAR Unmodified 1243.6925 0.69247202 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 9 0 1 77.705 77.705 2 0.026939 22693 TMT1-8 58.676 26.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4560 2935 4525 7322 9591 9591 1 ELLIHER Unmodified 908.50797 0.50796571 2371 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 0 4 0 1 36.056 36.056 3 0.016571 8771 TMT1-3 71.877 5.4482 46.584 57.622 56.779 51.296 56.5 52.754 44 58 58 51 58 51 1 1 1 1 1 1 4784.4 4561 2371 4526 7323 9592 9592 1 ELLIIGGVAAR Unmodified 1110.6761 0.67609367 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 7 0 1 63.256 63.256 2 1.0136E-06 18719 TMT1-6 142.92 102.04 99.823 107.85 83.24 87.997 113.41 112.96 94 109 87 87 116 109 1 1 1 1 1 1 22920 4562 2291 4527 7324 9593 9593 1 ELLIQFYK Unmodified 1052.5906 0.59063271 2898;2904 Q9UKV8-2;Q9UKV8;Q9UL18;Q9H9G7-2;Q9HCK5 AGO2;AGO1;AGO3;AGO4 Protein argonaute-2;Protein argonaute-1;Protein argonaute-3;Protein argonaute-4 no no 0 0 0 0 0 8 0 1 69.793 69.793 2 0.0015704 21405 TMT1-7 86.833 59.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4563 2898;2904 4528 7325 9594 9594 1 ELLKPNASVALHK Unmodified 1418.8245 0.82454882 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 1 8 0 1 47.067 47.067 4 0.00027836 12429 TMT1-7 86.944 73.135 259.44 339.38 292.11 242.84 400.44 380.86 245 340 300 245 406 368 1 1 1 1 1 1 14794 4564 1118 4529 7326 9595 9595 1 ELLLPNWQGSGSHGLTIAQR Unmodified 2176.1389 0.1389001 1632 Q09666;Q09666-2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 8 0 1 62.622 62.622 3 9.6512E-18 18573 TMT1-7 122.13 106.86 46.612 50.146 58.297 27.282 50.018 60.401 44 51 58 29 51 58 1 1 1 1 1 1 14652 4565 1632 4530 7327 9596 9596 1 ELLLQPVTISR Unmodified 1267.75 0.7499869 1351 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 7.33 0.471 2 1 63.081 63.081 2;3 7.1018E-42 18747 TMT1-6 220.17 147.69 471.46 878.23 809.32 682.98 697.67 944.82 448 868 827 681 728 905 4 4 4 4 4 4 314410 4566 1351 4531 7328;7329;7330 9597;9598;9599;9600 9598 4 ELLLTGPGLEER Unmodified 1325.7191 0.7190807 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 4.5 0.5 1 1 60.985 60.985 2 6.6896E-08 18222 TMT1-4 110.39 77.267 46.571 81.331 38.778 83.395 92.204 66.659 44 80 44 80 94 65 1 1 1 1 1 1 11862 4567 2166 4532 7331;7332 9601;9602 9602 2 ELLNALFSNPMDDNLICAVK Unmodified 2276.1181 0.11808959 2607 Q9H074-3;Q9H074-2;Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes no 0 0 0 0 0 8 0 1 92.446 92.446 3 0.0082464 29984 TMT1-7 30.969 22.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4568 2607 4533 7333 9603 9603 1 ELLNPVVEFVSHPSTTCR Unmodified 2084.0361 0.036074515 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 7 0 1 66.54 66.54 3 0.00019443 20054 TMT1-6 55.337 46.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4569 1507 4534 7334 9604 9604 1 ELLPEIR Unmodified 868.50182 0.5018177 1175 P49321-2;P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 0 4 0 1 54.571 54.571 2 0.04473 16111 TMT1-3 84.097 2.3136 77.331 109.51 74.945 104.49 134.63 143.27 73 109 80 102 138 138 1 1 1 1 1 1 12931 4570 1175 4535 7335 9605 9605 1 ELLPGSVMLGFAR Unmodified 1388.7486 0.74860669 1510 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 0 0 0 0 0 8 0 1 74.678 74.678 2 0.011906 23323 TMT1-7 68.069 7.0958 30.625 66.656 26.266 21.515 51.346 29.449 29 65 29 22 51 29 1 1 1 1 1 1 5228.6 4571 1510 4536 7336 9606 9606 1 ELLPVLISAMK Unmodified 1212.7152 0.71518129 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 6.75 3.34 1 1 2 82.594 82.594 2;3 2.4363E-08 24459 TMT1-8 134.75 108.08 1281.2 1641.2 1483.7 1088.3 1357.5 1809.7 1210 1647 1513 1100 1405 1734 7 7 7 7 7 7 518420 4572 776 4537 7337;7338;7339;7340 9607;9608;9609;9610;9611;9612;9613 9612 7 ELLPVLISAMK Oxidation (M) 1228.7101 0.71009592 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 1 0 0 8.67 0.471 1 2 71.502 71.502 2;3 7.2096E-05 20193 TMT1-8 107.45 56.848 131.33 166.36 147.62 139.27 147.12 189.81 124 167 152 138 153 182 3 3 3 3 3 3 45267 4573 776 4537 7341;7342;7343 9614;9615;9616 9615 137 3 ELLQELAEFMR Unmodified 1377.6962 0.69623677 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 6 0 1 89.329 89.329 2 0.013013 29456 TMT1-5 76.522 35.493 19.09 33.673 9.094 15.522 17.583 15.488 18 33 11 15 18 15 1 1 1 1 1 1 3949.2 4574 1530 4538 7344 9617 9617 1 ELLQHPFLK Unmodified 1123.639 0.63897988 1680 Q13177;O75914-2;O75914;O75914-4;O75914-3 PAK2;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3 yes no 0 0 0 0 0 8 0 1 53.961 53.961 3 0.0040478 15227 TMT1-7 77.677 54.848 395.55 513.29 351.06 345.85 490.23 582.97 373 513 369 344 503 560 2 2 2 2 2 2 65558 4575 1680 4539 7345 9618;9619 9619 2 ELLQSFDSALQSVK Unmodified 1563.8144 0.81443765 1204 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 0 7 0 1 78.113 78.113 3 2.0711E-05 24597 TMT1-6 93.237 69.633 30.733 35.658 34.287 53.205 26.305 46.153 29 36 36 51 29 44 1 1 1 1 1 1 5118.2 4576 1204 4540 7346 9620 9620 1 ELLSGPNR Unmodified 884.47158 0.4715802 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 5 0 1 38.818 38.818 2 0.0088247 9562 TMT1-4 101.33 56.606 98.915 214.34 145.62 123.1 141.36 135.61 94 210 152 123 145 131 1 1 1 1 1 1 16238 4577 1043 4541 7347 9621 9621 1 ELLTEFGYK Unmodified 1098.5597 0.55972651 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 6 0 1 65.389 65.389 3 0.00040462 20219 TMT1-5 106.6 65.605 99.574 138.46 99.104 55.015 131.44 88.991 94 138 102 58 131 87 1 1 1 1 1 1 11713 4578 1180 4542 7348 9622 9622 1 ELLTLDEKDPR Unmodified 1327.6983 0.69834526 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 1 4.5 0.5 1 1 50.915 50.915 3 0.00043239 14655 TMT1-3 99.215 37.872 655.12 1013.1 845.56 881.4 842.14 919.38 620 1007 877 867 874 885 2 2 2 2 2 2 99881 4579 1135 4543 7349;7350 9623;9624 9623 2 ELLTSFGPLK Unmodified 1103.6227 0.62266112 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 8 0 1 68.404 68.404 3 0.00030877 20842 TMT1-7 102.06 50.207 60.737 155.63 119.64 85.289 142.03 166.51 58 152 123 87 145 160 1 1 1 1 1 1 27516 4580 896 4544 7351 9625 9625 1 ELLTTMGDR Unmodified 1034.5066 0.50664508 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 0 3.8 1.72 1 1 1 1 1 49.267 49.267 2 8.3022E-09 13775 TMT1-4 172.21 122.85 2585.8 2990.4 2904.6 2395.2 2917.6 3700 2440 3020 2961 2400 3016 3549 6 6 6 6 6 6 579920 4581 115;879 4545 7352;7353;7354;7355;7356 9626;9627;9628;9629;9630;9631;9632 9631 7 ELLTTMGDR Oxidation (M) 1050.5016 0.5015597 115;879 P19105;O14950;P24844;P24844-2 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 1 0 0 3 0 1 40.22 40.22 2 0.0059995 11396 TMT1-2 77.318 54.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4582 115;879 4545 7357 9633 9633 16 1 ELLTTMGDRFTDEEVDELYR Unmodified 2431.1213 0.12132029 115 P19105;O14950 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 0 0 0 0 1 3.33 0.471 2 1 70.378 70.378 3;4 1.1034E-35 22186 TMT1-3 161.99 148.4 261.95 373.71 201.49 238.98 195.86 403.76 247 371 218 233 211 384 6 6 6 6 6 6 109720 4583 115 4546 7358;7359;7360 9634;9635;9636;9637;9638;9639 9638 6 ELLTTMGDRFTDEEVDEMYR Unmodified 2449.0777 0.077740913 879 P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 1 4 0 1 67.826 67.826 3 1.5761E-06 21274 TMT1-3 80.382 73.429 38.112 50.968 43.45 20.372 57.665 60.182 36 51 44 22 58 58 1 1 1 1 1 1 13683 4584 879 4547 7361 9640 9640 1 ELLTVGQEHWK Unmodified 1338.6932 0.6932003 3037 Q9Y5X1 SNX9 Sorting nexin-9 yes yes 0 0 0 0 0 6 0 1 52.886 52.886 3 0.0018142 15314 TMT1-5 78.903 52.305 115.68 137.4 97.667 86.87 127.6 158.39 109 138 102 87 131 152 1 1 1 1 1 1 13767 4585 3037 4548 7362 9641 9641 1 ELLWGYR Unmodified 935.4865 0.48650199 749 P16671;P16671-3;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 7 0 1 59.103 59.103 2 0.010195 17152 TMT1-6 109.11 48.398 382.15 516.13 617.15 588.31 528.38 548.84 362 519 625 581 549 529 1 1 1 1 1 1 119510 4586 749 4549 7363 9642 9642 1 ELLWSWAQK Unmodified 1159.6026 0.60259438 3043 Q9Y616 IRAK3 Interleukin-1 receptor-associated kinase 3 yes yes 0 0 0 0 0 9 0 1 72.154 72.154 3 0.046829 20513 TMT1-8 39.305 11.562 46.466 73.484 63.077 58.588 55.652 67.702 44 73 65 58 58 65 1 1 1 1 1 1 2863 4587 3043 4550 7364 9643 9643 1 ELLYFLDSCEPEFK Unmodified 1788.828 0.8280388 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 5 0 1 83.112 83.112 4 0.016745 26942 TMT1-4 48.704 37.012 23.335 28.932 20.952 22.408 20.685 37.786 22 29 22 22 22 36 1 1 1 1 1 1 2933.3 4588 199 4551 7365 9644 9644 1 ELNELVSAIEEHFFQPQK Unmodified 2157.0742 0.074234161 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 6.5 0.5 2 2 89.966 89.966 3;4 9.9729E-12 29124 TMT1-6 116.6 98.309 239.36 311.43 262.79 187.93 216.86 286.96 226 312 269 190 225 275 6 6 6 6 6 6 35212 4589 2407 4552 7366;7367;7368;7369 9645;9646;9647;9648;9649;9650 9649 6 ELNEMQAQIAEESQIR Unmodified 1887.8996 0.89964061 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 3 0 1 59.87 59.87 3 9.2664E-12 19170 TMT1-2 123.76 99.916 38.444 20.591 13.447 30.38 27.391 45.056 36 22 15 29 29 43 1 1 1 1 1 1 12368 4590 251 4553 7370 9651 9651 1 ELNIEPTDLMNR Unmodified 1443.7028 0.70277871 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 4 0 1 61.77 61.77 3 0.02433 18940 TMT1-3 50.46 31.189 77.6 78.957 55.68 43.719 56.042 76.219 73 80 58 44 58 73 1 1 1 1 1 1 11133 4591 322 4554 7371 9652 9652 1 ELNITAAK Unmodified 858.48108 0.48108226 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 6 0 1 47.638 47.638 2 0.005665 13165 TMT1-5 115.71 49.032 355.79 786.03 490.33 378.67 570.14 648.91 338 769 514 383 583 624 2 2 2 2 2 2 95324 4592 1412 4555 7372 9653;9654 9653 2 ELNVMFIETSAK Unmodified 1380.6959 0.69590241 810 P20340;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A yes no 0 0 0 0 0 6 0 1 67.994 67.994 3 0.00019436 21296 TMT1-5 92.039 67.657 68.775 71.321 102.51 72.364 69.917 90.747 65 73 102 73 73 87 1 1 1 1 1 1 13598 4593 810 4556 7373 9655 9655 1 ELNWDDYK Unmodified 1081.4716 0.47163978 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 57.491 57.491 2 0.0058188 16947 TMT1-4 113.62 62.563 99.17 137.34 167.93 90.332 127.69 150.93 94 138 167 94 131 145 1 1 1 1 1 1 17681 4594 1112 4557 7374 9656 9656 1 ELNYFAK Unmodified 883.44397 0.44396847 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 4.67 2.62 1 1 1 53.941 53.941 2;3 0.0094733 14929 TMT1-6 112.17 32.362 895.95 1443.6 1302.8 866.95 1090.9 1371.7 849 1434 1324 883 1126 1316 4 4 4 4 4 4 167420 4595 397 4558 7375;7376;7377 9657;9658;9659;9660 9659 4 ELPAAVAPAGPASLAR Unmodified 1489.8253 0.8252771 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 6 0 1 55.43 55.43 2 2.5192E-11 16262 TMT1-5 126.5 81.778 38.107 43.397 50.803 35.529 42.053 68.09 36 44 51 36 44 65 1 1 1 1 1 1 20478 4596 349 4559 7378 9661 9661 1 ELPADLAR Unmodified 883.47633 0.47633123 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 4 0 1 45.419 45.419 2 0.019459 12494 TMT1-3 89.369 39.33 46.103 111.33 91.971 63.404 114.8 105.46 44 109 94 65 116 102 1 1 1 1 1 1 8972.8 4597 2166 4560 7379 9662 9662 1 ELPAWVSFPDVEK Unmodified 1515.7609 0.76094551 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 76.461 76.461 3 1.2364E-09 24492 TMT1-5 107.37 85.74 68.774 110.17 69.792 50.229 71.998 59.774 65 109 73 51 73 58 1 1 1 1 1 1 12856 4598 2525 4561 7380;7381 9663;9664 9663 2 ELPDLEDLMK Unmodified 1201.59 0.59004036 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 4 0 1 75.843 75.843 3 0.0018035 24392 TMT1-3 85.29 55.355 23.216 44.789 27.605 21.735 35.374 37.367 22 44 29 22 36 36 1 1 1 1 1 1 5098.5 4599 2688 4562 7382 9665 9665 1 ELPDVLER Unmodified 969.51311 0.51311067 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 2.5 0.5 1 1 54.871 54.871 2 0.0064426 16846 TMT1-1 105.14 57.287 138.66 204.2 146.03 123.08 141.1 143.08 131 203 152 123 145 138 3 3 3 3 3 3 34686 4600 1150 4563 7383;7384 9666;9667;9668 9666 3 ELPEHTVK Unmodified 951.50255 0.50254598 447 P02774-3;P02774;P02774-2 GC Vitamin D-binding protein yes no 0 0 0 0 0 4 0 1 34.712 34.712 3 0.002921 8226 TMT1-3 93.143 54.905 146.48 165.69 126.94 92.511 141.7 166.52 138 167 131 94 145 160 1 1 1 1 1 1 13365 4601 447 4564 7385 9669 9669 1 ELPEPLLTFDLYPHVVGFLNIDESQR Unmodified 3040.5546 0.55458814 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 91.297 91.297 4 1.6906E-11 29573 TMT1-6 86.18 84.455 46.413 73.338 72.072 51.168 72.965 60.812 44 73 73 52 74 59 3 3 3 3 3 3 26445 4602 1616 4565 7386;7387 9670;9671;9672 9671 3 ELPEPLMTFDLYDDWMR Unmodified 2169.9751 0.97511374 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 5 0 1 93.494 93.494 3 0.0035212 30970 TMT1-4 41.912 28.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4603 3003 4566 7388 9673 9673 1 ELPEVTNSVFHEINMWVSQR Unmodified 2414.1689 0.1688796 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 7.5 0.5 1 1 83.217 83.217 3 0.00056773 26576 TMT1-7 54.15 44.867 39.108 58.235 50.254 27.761 49.996 60.401 37 58 51 29 51 58 2 2 2 2 2 2 12204 4604 2482 4567 7389;7390 9674;9675 9675 2 ELPGCLGR Unmodified 900.44874 0.44873627 1246 P51606 RENBP N-acylglucosamine 2-epimerase yes yes 0 0 0 0 0 5 0 1 43.555 43.555 2 0.00018144 11457 TMT1-4 120.52 79.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4605 1246 4568 7391 9676 9676 1 ELPGHTGYLSCCR Unmodified 1548.6813 0.68133176 1454;2674 P62879;P62879-2;Q9HAV0 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 no no 0 0 0 0 0 5 0 1 38.61 38.61 3 2.8709E-11 9465 TMT1-4 140.16 129.53 107.87 183.49 108.73 117.37 156.01 173.57 102 181 116 116 160 167 1 1 1 1 1 1 28268 4606 1454;2674 4569 7392 9677 9677 1 ELPPDQAEYCIAR Unmodified 1560.7242 0.72424243 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;O43707-3 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 2.5 0.5 2 2 50.22 50.22 2;3 1.1391E-36 15070 TMT1-1 211.37 176.1 1308.1 1768.2 1544.5 1369.7 1606.3 1741.8 1236 1769 1588 1365 1653 1677 25 25 25 25 25 25 212870 4607 672;195 4570 7393;7394;7395;7396 9678;9679;9680;9681;9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702 9685 25 ELPPGVEELLNK Unmodified 1336.7238 0.72383172 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 5 0 1 73.96 73.96 2 2.3117E-05 23399 TMT1-4 92.445 43.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4608 1796 4571 7397 9703 9703 1 ELPQFATGENLPR Unmodified 1470.7467 0.74669243 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6;Q9BZZ5-1;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 5 0 2 56.985 56.985 2;3 2.3318E-05 16743 TMT1-4 110.15 49.177 76.118 148.05 65.772 88.625 135.36 143.25 72 145 73 87 138 138 2 2 2 2 2 2 16613 4609 2591 4572 7398;7399 9704;9705 9704 2 ELPQPLLSVEYLK Unmodified 1527.8548 0.8548459 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 7 0 1 75.841 75.841 3 6.1949E-06 23734 TMT1-6 107.61 85.134 115.46 136.77 136.41 92.498 112.4 136.44 109 138 138 94 116 131 1 1 1 1 1 1 26815 4610 2172 4573 7400 9706 9706 1 ELPSAVSR Unmodified 857.46068 0.46068117 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 4 0 1 37.92 37.92 2 5.0374E-05 9534 TMT1-3 160.54 69.831 130.45 182.08 102.15 94.404 119.64 136.23 123 181 109 94 123 131 1 1 1 1 1 1 33231 4611 68 4574 7401 9707 9707 1 ELPSFLGK Unmodified 889.49092 0.49091866 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 0 6.4 2.8 1 2 1 1 63.164 63.164 2;3 0.00075436 18670 TMT1-7 148.38 96.694 11562 20967 12016 10645 14932 17787 10941 20627 12760 10651 15327 17085 9 9 9 9 9 9 1973000 4612 899 4575 7402;7403;7404;7405;7406 9708;9709;9710;9711;9712;9713;9714;9715;9716 9714 9 ELPSTFGQLSALK Unmodified 1389.7504 0.75038083 2193 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 0 0 8 0 1 68.332 68.332 2 0.012812 20840 TMT1-7 67.019 7.2196 46.698 42.83 50.061 51.978 41.554 60.642 44 44 51 51 44 58 1 1 1 1 1 1 6046.2 4613 2193 4576 7407 9717 9717 1 ELPTAFDYVEFTR Unmodified 1586.7617 0.76167379 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 72.777 72.777 3 0.0069541 22885 TMT1-4 60.196 38.967 61.719 41.8 51.121 27.873 41.343 99.024 58 44 51 29 44 94 1 1 1 1 1 1 11815 4614 1737 4577 7408 9718 9718 1 ELPTEPPYTAYVGNLPFNTVQGDIDAIFK Unmodified 3208.5968 0.59684688 1822 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 0 6.75 0.433 1 3 95.231 95.231 3;4;5 4.1309E-05 31503 TMT1-5 53.209 47.179 85.825 108.67 98.378 113 103.87 144.14 81 109 102 110 109 138 4 4 5 4 5 5 29051 4615 1822 4578 7409;7410;7411;7412 9719;9720;9721;9722;9723 9720 5 ELPTLLHCAAK Unmodified 1251.6645 0.66454271 2213 Q8NDB2-4;Q8NDB2-3;Q8NDB2-2;Q8NDB2 BANK1 B-cell scaffold protein with ankyrin repeats yes no 0 0 0 0 0 7 0 1 51.25 51.25 3 0.0021593 14013 TMT1-6 77.744 48.271 169.56 170.16 211.87 96.201 141.28 173.99 160 174 210 102 145 167 1 1 1 1 1 1 8743 4616 2213 4579 7413 9724 9724 1 ELQAAGK Unmodified 715.38645 0.38645359 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 5 0 1 35.659 35.659 2 0.00093948 8322 TMT1-4 112.17 77.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4617 516 4580 7414 9725 9725 1 ELQAAQAR Unmodified 885.46683 0.46682918 432 P02649;CON__Q03247 APOE Apolipoprotein E yes no 0 0 0 0 0 3 0 1 29.017 29.017 2 0.027873 6935 TMT1-2 83.313 27.411 77.105 116.44 107.04 79.196 99.161 113.36 73 116 109 80 102 109 1 1 1 1 1 1 5529.2 4618 432 4581 7415 9726 9726 1 ELQAHGADELLK Unmodified 1322.683 0.68302954 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 3 1.41 1 2 47.053 47.053 3;4 0.00030052 13094 TMT1-3 89.46 49.306 1677.3 2304.4 2348 1854.4 2867.9 2370 1587 2309 2382 1874 2901 2300 2 2 2 2 2 2 200120 4619 129 4582 7416;7417;7418 9727;9728;9729 9728 3 ELQAHGADELLKR Unmodified 1478.7841 0.78414057 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 5 0 1 41.818 41.818 4 7.4986E-14 10807 TMT1-4 164.65 137.22 696.16 1028.3 788.55 702.92 807.46 919.3 658 1023 818 700 833 884 2 2 2 2 2 2 120050 4620 129 4583 7419 9730;9731 9731 2 ELQDQLEAEQYFSTLYK Unmodified 2104.0001 6.61646E-05 251;1708 O75116;Q13464 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 no no 0 0 0 0 0 5 0 1 76.316 76.316 3 3.5777E-14 24385 TMT1-4 125.86 116.11 123.39 98.573 97.786 111.34 104.46 129.2 116 102 101 109 109 124 2 2 2 2 2 2 25892 4621 251;1708 4584 7420 9732;9733 9733 2 ELQELQDSLNAER Unmodified 1543.7478 0.74781464 668 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 0 2 0 1 58.867 58.867 3 0.019524 18459 TMT1-1 50.843 45.359 23.293 28.814 28.218 29.485 28.202 22.647 22 29 29 29 29 22 1 1 1 1 1 1 3631 4622 668 4585 7421 9734 9734 1 ELQELSSSIK Unmodified 1132.5976 0.59756858 327 O94874;O94874-2 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 5 0 1 55.229 55.229 2 0.00084287 16151 TMT1-4 105.13 32.254 46.415 73.342 71.797 57.348 93.915 51.686 44 73 73 58 94 51 1 1 1 1 1 1 14433 4623 327 4586 7422 9735 9735 1 ELQELVQYPVEHPDK Unmodified 1822.9101 0.91012895 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 4.5 0.5 1 1 58.171 58.171 3;4 4.4306E-15 17468 TMT1-3 135.61 102.41 346.31 436.04 397.23 342.12 367.94 372.19 327 438 407 341 379 359 3 3 3 3 3 3 113350 4624 1311 4587 7423;7424 9736;9737;9738 9736 3 ELQEMDKDDESLIK Unmodified 1691.7924 0.79238158 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 3 0.816 1 1 1 55.17 55.17 3 6.3153E-19 16127 TMT1-3 163.8 104.1 770.12 1667.1 980.67 1035.2 1010.4 1904.9 731 1631 1045 1018 1074 1814 5 5 5 5 5 5 218040 4625 1269 4588 7425;7426;7427 9739;9740;9741;9742;9743 9742 5 ELQHAALGGTATR Unmodified 1323.6895 0.6895119 109 O14828-2;O14828 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 0 5 0 1 32.186 32.186 3 0.0077939 7020 TMT1-4 58.972 35.675 77.386 85.917 85.71 64.635 69.21 121.68 73 87 87 65 73 116 1 1 1 1 1 1 22919 4626 109 4589 7428 9744 9744 1 ELQISLK Unmodified 829.49092 0.49091866 1576 Q03164-2;Q03164;Q03164-3 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 0 0 7 0 1 56.074 56.074 3 0.0072705 15927 TMT1-6 87.323 6.8602 92.325 123.51 67.793 74.466 68.208 137.7 87 123 73 73 73 131 1 1 1 1 1 1 6023.5 4627 1576 4590 7429 9745 9745 1 ELQLEYLLGAFESLGK Unmodified 1808.956 0.95601651 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 8 0 1 98.87 98.87 3 0.0021063 32290 TMT1-7 61.692 42.859 7.3451 15.214 14.992 6.4725 15.151 7.0297 7 15 15 7 15 7 1 1 1 1 1 1 1574.7 4628 1994 4591 7430 9746 9746 1 ELQNAPDAIPESGVEPPALDTAWVEATR Unmodified 2975.4512 0.45124528 1670 Q13098-5;Q13098;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 0 4 0 1 75.461 75.461 4 0.00065279 24287 TMT1-3 42.536 36.816 46.696 42.825 50.397 44.444 34.278 69.378 44 44 51 44 37 66 2 2 2 2 2 2 9439.2 4629 1670 4592 7431 9747;9748 9748 2 ELQNEVEK Unmodified 987.48729 0.48728985 2105 Q92843-2;Q86U42-2;Q86U42 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 0 2 0 1 41.251 41.251 2 0.020673 11479 TMT1-1 88.496 20.598 38.212 51.245 26.464 36.976 42.243 60.623 36 51 29 36 44 58 1 1 1 1 1 1 4913.7 4630 2105 4593 7432 9749 9749 1 ELQNGSLFEADFILLDGIPANVIR Unmodified 2643.3908 0.39081727 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6 0 1 95.031 95.031 3 1.0949E-06 31349 TMT1-5 72.227 64.423 7.476 6.9439 7.574 7.651 0 15.99 7 7 7 7 0 15 1 1 1 1 0 1 2559 4631 772 4594 7433 9750;9751 9750 2 ELQNTVANLHVR Unmodified 1392.7474 0.74736113 127 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 0 0 0 0 0 6 0 1 44.178 44.178 3 0.00063259 11905 TMT1-5 81.918 57.664 130.86 113.07 91.768 56.035 100.48 105.86 123 116 94 58 102 102 1 1 1 1 1 1 26391 4632 127 4595 7434 9752 9752 1 ELQPSEEVTWK Unmodified 1344.6561 0.65614609 277 O75438;O75438-2 NDUFB1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 yes no 0 0 0 0 0 4.5 0.5 1 1 55.074 55.074 3 0.00015327 16367 TMT1-3 72.705 49.329 68.408 124.26 119.32 133.84 118.38 120.28 65 123 123 131 123 116 1 1 1 1 1 1 7849.9 4633 277 4596 7435;7436 9753;9754 9753 2 ELQQALEGQLR Unmodified 1283.6834 0.68336389 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 0 4 0 1 55.279 55.279 2 1.3052E-08 16355 TMT1-3 125.3 73.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4634 2651 4597 7437 9755 9755 1 ELQSLAAAVVPSAQTLK Unmodified 1724.9672 0.96724989 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 8 0 2 71.97 71.97 3;4 1.2472E-05 22220 TMT1-7 81.449 55.731 138.65 156.68 188.35 135.86 199.37 195.78 131 159 189 138 203 189 2 2 2 2 2 2 53266 4635 322 4598 7438;7439 9756;9757 9756 2 ELQTQYDALKK Unmodified 1335.7034 0.70343063 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 1 6 0 1 47.586 47.586 3 0.00053417 13167 TMT1-5 96.756 73.638 184.41 279.81 148.54 154.12 168.28 193.47 174 277 160 152 174 186 1 1 1 1 1 1 15148 4636 2306 4599 7440 9758 9758 1 ELQTSIF Unmodified 836.42798 0.42798405 2809 Q9P0I2 EMC3 ER membrane protein complex subunit 3 yes yes 0 0 0 0 0 5 0 1 67.685 67.685 2 0.0042801 20934 TMT1-4 83.801 65.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4637 2809 4600 7441 9759 9759 1 ELQVGIPVADEAGQR Unmodified 1580.8158 0.81583463 2561 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 0 3 0 1 57.12 57.12 3 8.5614E-05 18068 TMT1-2 65.467 48.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4638 2561 4601 7442 9760 9760 1 ELQWLVAK Unmodified 985.55967 0.55966693 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8 0 1 66.312 66.312 2 0.00031598 19998 TMT1-7 152.59 72.414 145.84 218.95 189.67 191.45 203.12 225.53 138 218 196 189 210 217 2 2 2 2 2 2 18763 4639 2066 4602 7443 9761;9762 9761 2 ELRDHADSNIVIMLVGNK Unmodified 2023.0521 0.052058931 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 1 7 0 1 61.993 61.993 4 0.0011332 18248 TMT1-6 60.062 42.145 46.178 95.349 92.914 63.771 92.3 90.108 44 94 94 65 94 87 1 1 1 1 1 1 8159.5 4640 1880 4603 7444 9763 9763 1 ELSAQPEVHR Unmodified 1164.5887 0.58873523 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 3.33 1.25 1 1 1 31.176 31.176 3 0.00035003 7527 TMT1-1 101.38 73.285 185.09 293.76 202.36 165.76 250.33 225.24 175 291 211 167 254 218 4 4 4 4 4 4 43395 4641 2744 4604 7445;7446;7447 9764;9765;9766;9767 9764 4 ELSAVTFPDIIR Unmodified 1359.7398 0.73981614 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 6 0 1 70.868 70.868 3 1.4378E-07 22378 TMT1-5 117.98 102.71 38.082 58.437 42.298 36.18 34.417 45.922 36 58 44 36 36 44 1 1 1 1 1 1 13571 4642 1091 4605 7448 9768 9768 1 ELSDFISYLQR Unmodified 1369.6878 0.68778057 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 7 0.707 1 2 1 78.043 78.043 2;3 8.8649E-24 24581 TMT1-6 202.44 126.7 686.62 1052.2 928.23 669.79 905.66 997.52 650 1047 947 679 928 960 4 4 4 4 4 4 474380 4643 955 4606 7449;7450;7451;7452 9769;9770;9771;9772 9771 4 ELSDFLR Unmodified 878.44978 0.44978213 3055 Q9Y6E2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes yes 0 0 0 0 0 5 0 1 59.947 59.947 2 0.0011408 17893 TMT1-4 97.033 33.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4644 3055 4607 7453 9773 9773 1 ELSDIAHR Unmodified 939.47739 0.47739386 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 3 1.87 1 1 1 1 34.912 34.912 3 9.7098E-14 9179 TMT1-2 190.93 142.36 2188.2 2708.7 2515 1996 2425.3 2518 2066 2724 2567 2005 2489 2427 5 5 5 5 5 5 639900 4645 459 4608 7454;7455;7456;7457 9774;9775;9776;9777;9778 9776 5 ELSDLESAR Unmodified 1018.4931 0.49310351 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 2 0 1 45.486 45.486 2 0.00021551 13136 TMT1-1 113.66 56.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4646 917 4609 7458 9779 9779 1 ELSEAAEAQHGPHSAVAR Unmodified 1858.8922 0.89218747 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 4 0 1 30.227 30.227 4 0.00097499 6453 TMT1-3 57.482 38.159 122.75 215.51 106.4 124.89 170.58 165.69 116 212 116 123 174 160 1 1 1 1 1 1 6722.7 4647 288 4610 7459 9780 9780 1 ELSEALGQIFDSQR Unmodified 1591.7842 0.78420015 1622 Q08380 LGALS3BP Galectin-3-binding protein yes yes 0 0 0 0 0 6 0 1 74.752 74.752 3 3.752E-05 23888 TMT1-5 90.689 70.485 30.799 20.732 35.867 62.123 12.043 23.108 29 22 37 59 15 22 1 1 1 1 1 1 3222.6 4648 1622 4611 7460 9781 9781 1 ELSEQIQR Unmodified 1001.5142 0.5141733 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 3 0 1 36.707 36.707 2 0.0014445 9991 TMT1-2 141.93 72.732 91.335 217.9 154.16 121.85 180.93 172.86 87 213 160 123 184 167 1 1 1 1 1 1 24413 4649 720 4612 7461 9782 9782 1 ELSEYVR Unmodified 894.4447 0.44469675 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 44.118 44.118 2 0.010552 12896 TMT1-2 107.59 63.779 214.62 297.82 285.9 200.51 230.39 302.57 203 298 290 203 239 290 2 2 2 2 2 2 36405 4650 2073 4613 7462 9783;9784 9783 2 ELSFSGIPCEGGLR Unmodified 1520.7293 0.72932781 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 5 0 1 61.719 61.719 3 0.010064 18624 TMT1-4 53.3 38.669 46.455 64.819 72.277 58.045 55.383 76.238 44 65 73 58 58 73 1 1 1 1 1 1 5873.1 4651 2759 4614 7463 9785 9785 1 ELSGESDELGISQDEQLSK Unmodified 2062.9542 0.95423818 2369 Q96B97;Q96B97-2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 58.673 58.673 3 2.0121E-23 18372 TMT1-1 134.82 119.23 54.008 96.8 38.194 74.837 84.169 98.868 51 95 44 72 87 95 2 2 2 2 2 2 21083 4652 2369 4615 7464;7465 9786;9787 9786 2 ELSGLGSALK Unmodified 973.54441 0.5444108 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 55.552 55.552 2;3 0.0027226 15745 TMT1-6 78.932 41.74 270.01 224.71 235.02 195.99 225.1 249.42 254 232 239 196 232 240 2 2 2 2 2 2 24569 4653 1194 4616 7466;7467 9788;9789 9789 2 ELSGPEGK Unmodified 815.4025 0.40249759 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 4 0 1 37.59 37.59 2 0.017671 9390 TMT1-3 90.657 48.548 107.69 223.98 105.91 126.08 108.73 198.37 102 219 116 123 116 189 1 1 1 1 1 1 13658 4654 224 4617 7468 9790 9790 1 ELSGTIK Unmodified 746.41742 0.41741937 951 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 0 5.5 0.5 1 1 42.266 42.266 2 0.019116 10969 TMT1-4 98.299 14.685 721.61 1160.7 727.41 825.8 860.19 1199.2 682 1148 774 810 898 1148 2 2 2 2 2 2 72027 4655 951 4618 7469;7470 9791;9792 9791 2 ELSHEDLEPPPEHIPPPPRPPK Unmodified 2507.2809 0.28087289 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 1 4 0 1 46.087 46.087 5 0.0015001 12707 TMT1-3 49.768 41.93 115.35 144.04 147.29 178.5 154.22 143.77 109 145 152 174 160 139 1 1 1 1 1 1 12537 4656 771 4619 7471 9793 9793 1 ELSLAGNELGDEGAR Unmodified 1529.7322 0.73216458 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 2.5 0.5 1 1 53.785 53.785 3 1.5451E-22 16506 TMT1-1 169.54 124.38 100.55 130.57 121.62 94.469 112.57 128.97 95 131 124 95 116 124 3 3 3 3 3 3 67014 4657 681 4620 7472;7473 9794;9795;9796 9795 3 ELSNFYFSIIK Unmodified 1359.7075 0.70745338 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 9 0 1 77.649 77.649 3 0.0056897 22654 TMT1-8 61.233 30.361 37.889 81.645 55.036 59.053 56.4 45.295 36 80 58 58 58 44 1 1 1 1 1 1 5086.1 4658 2741 4621 7474 9797 9797 1 ELSPDIAHLASLK Unmodified 1392.7613 0.76127986 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 6 0 1 61.788 61.788 3 1.0783E-11 18796 TMT1-5 110.29 76.407 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4659 2166 4622 7475 9798 9798 1 ELSTTLNADEAVTR Unmodified 1518.7526 0.75256567 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 2.5 0.5 1 1 49.836 49.836 3 8.4294E-08 14898 TMT1-1 113.25 86.115 84.824 92.756 92.147 80.098 98.365 104.86 80 94 94 80 101 101 2 2 2 2 2 2 27218 4660 1009 4623 7476;7477 9799;9800 9799 2 ELSVMFIETSAK Unmodified 1353.685 0.68500338 2733 Q9NRW1;Q9NRW1-2 RAB6B Ras-related protein Rab-6B yes no 0 0 0 0 0 7 0 1 69.284 69.284 3 0.0015244 21133 TMT1-6 56.122 16.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4661 2733 4624 7478 9801 9801 1 ELTADAR Unmodified 774.38718 0.38718187 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 2 0.816 1 1 1 30.605 30.605 2 0.009578 7353 TMT1-1 111.73 55.217 1224 1525.2 1460.9 1105.8 1374.5 1685.6 1156 1534 1486 1115 1418 1618 3 3 3 3 3 3 247320 4662 1149 4625 7479;7480;7481 9802;9803;9804 9803 3 ELTALFK Unmodified 820.46945 0.46945494 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 8 0 1 63.835 63.835 2 0.0014051 19058 TMT1-7 107.32 40.282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4663 156 4626 7482 9805 9805 1 ELTASHATK Unmodified 956.49271 0.49270958 2012 Q6IAN0 DHRS7B Dehydrogenase/reductase SDR family member 7B yes yes 0 0 0 0 0 5 0 1 29.516 29.516 3 0.0036942 5912 TMT1-4 54.608 25.881 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4664 2012 4627 7483 9806 9806 1 ELTAVVQK Unmodified 886.51238 0.51238239 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 6 0 1 48.408 48.408 2 0.0011715 13506 TMT1-5 144.38 75.46 261 771.85 384.28 433 574.7 534.72 249 748 417 427 586 517 1 1 1 1 1 1 51515 4665 861 4628 7484 9807 9807 1 ELTDEEILASVMIK Unmodified 1589.8222 0.82222514 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 5 0 1 81.109 81.109 3 0.00018169 26213 TMT1-4 79.466 41.277 23.421 36.725 0 23.51 28.477 22.639 22 36 0 22 29 22 1 1 0 1 1 1 4267.9 4666 1960 4629 7485 9808 9808 1 ELTEEKESAFEFLSSA Unmodified 1815.8414 0.84144026 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 1 5 0 1 77.269 77.269 3 9.6435E-07 24740 TMT1-4 100.54 66.594 230.78 334.68 243.48 226.85 242.61 368.31 218 333 254 225 254 352 2 2 2 2 2 2 74346 4667 1074 4630 7486 9809;9810 9810 2 ELTGEDVLVR Unmodified 1129.5979 0.59790293 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 2 0 1 51.842 51.842 2 0.0047216 15635 TMT1-1 92.051 48.968 37.707 88.696 79.542 33.805 42.646 53.149 36 87 80 36 44 51 1 1 1 1 1 1 9269.1 4668 1886 4631 7487 9811 9811 1 ELTGYNADVICLQEVDR Unmodified 1993.9415 0.94150543 2018 Q6L8Q7-2;Q6L8Q7 PDE12 2',5'-phosphodiesterase 12 yes no 0 0 0 0 0 3 0 1 64.889 64.889 3 5.7501E-08 21121 TMT1-2 101.87 85.88 15.775 29.309 28.91 14.143 28.101 46.102 15 29 29 15 29 44 1 1 1 1 1 1 4666.5 4669 2018 4632 7488 9812 9812 1 ELTIGSK Unmodified 746.41742 0.41741937 510 P06703 S100A6 Protein S100-A6 yes yes 0 0 0 0 0 4.5 2.06 1 1 2 45.568 45.568 2;3 0.0053985 12289 TMT1-5 91.626 21.628 1717.4 2734.8 2094.2 1867.5 1815.4 2907.4 1625 2712 2172 1854 1913 2776 6 6 6 6 6 6 706570 4670 510 4633 7489;7490;7491;7492 9813;9814;9815;9816;9817;9818 9818 6 ELTNLLGLHPK Unmodified 1233.7081 0.70812208 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 8 0 1 60.12 60.12 3 0.00066049 17597 TMT1-7 64.199 29.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4671 1138 4634 7493 9819 9819 1 ELTPQVVSAAR Unmodified 1169.6404 0.64043645 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 1.41 1 1 1 1 1 45.311 45.311 2 4.5504E-18 12122 TMT1-4 192.21 138.69 1888.5 2273.1 2030.8 1561 1924.5 2514.1 1782 2288 2076 1572 1991 2410 5 5 5 5 5 5 488550 4672 776 4635 7494;7495;7496;7497;7498 9820;9821;9822;9823;9824;9825 9821 6 ELTQLTELYLYSNK Unmodified 1713.8825 0.88251721 2941 Q9UQ13-2;Q9UQ13 SHOC2 Leucine-rich repeat protein SHOC-2 yes no 0 0 0 0 0 7 0 1 76.335 76.335 3 0.00024098 23917 TMT1-6 78.69 59.857 69.202 48.763 49.933 44.318 42.419 45.694 65 51 51 44 44 44 1 1 1 1 1 1 7400.9 4673 2941 4636 7499 9826 9826 1 ELTSLVK Unmodified 788.46437 0.46436956 66 O00422;O00422-2 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 0 6 0 1 52.688 52.688 2 0.0088578 15212 TMT1-5 114.78 50.007 221.79 405.38 251.45 293.76 321.22 335.15 210 399 268 288 331 323 1 1 1 1 1 1 16689 4674 66 4637 7500 9827 9827 1 ELTVSNNDINEAGVR Unmodified 1629.7958 0.79582747 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 2.67 0.471 1 2 47.661 47.661 2;3 1.2062E-65 14291 TMT1-2 236.08 181.37 138.55 218.98 153.42 131.69 124.73 181.92 131 217 160 131 131 174 3 3 3 3 3 3 65647 4675 681 4638 7501;7502;7503 9828;9829;9830 9829 3 ELTYQNTDLSEIKEEEQVK Unmodified 2295.1118 0.11180146 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 1 4 0 1 58.792 58.792 4 2.9464E-07 17729 TMT1-3 89.846 78.429 122.66 193.67 140.16 100.76 125.89 189.35 116 192 145 102 131 181 1 1 1 1 1 1 19744 4676 1924 4639 7504 9831 9831 1 ELVAEAK Unmodified 758.41742 0.41741937 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 4 0 1 41.919 41.919 2 0.013441 11047 TMT1-3 102.72 34.298 249.85 338.09 280.88 254.93 258.46 326.28 236 338 290 253 269 313 1 1 1 1 1 1 29596 4677 325 4640 7505 9832 9832 1 ELVAECGGR Unmodified 989.46003 0.46002924 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 3 0 1 34.944 34.944 2 0.0048266 9330 TMT1-2 98.582 55.718 99.756 91.477 108.4 79.568 75.046 144.97 94 94 109 80 80 138 1 1 1 1 1 1 12276 4678 2279 4641 7506 9833 9833 1 ELVAENLSVR Unmodified 1128.6139 0.61388734 1867 Q15642-4;Q15642-2;Q15642-3;Q15642;Q15642-5 TRIP10 Cdc42-interacting protein 4 yes no 0 0 0 0 0 4 0 1 50.011 50.011 2 3.5594E-06 14274 TMT1-3 154.85 82.62 77.514 78.719 70.233 81.682 83.598 106.35 73 80 73 80 87 102 1 1 1 1 1 1 11224 4679 1867 4642 7507 9834 9834 1 ELVALMSAIR Unmodified 1101.6216 0.62161526 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 8.5 0.5 1 1 72.988 72.988 2 0.00060441 22671 TMT1-7 112.3 41.479 115.24 175.03 139.88 133.09 93.495 206.27 109 174 145 131 102 196 2 2 2 2 2 2 39026 4680 608 4643 7508;7509 9835;9836 9835 2 ELVAQGK Unmodified 743.41775 0.41775372 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 4.25 1.92 1 2 1 38.536 38.536 2;3 0.013441 9000 TMT 1-phospho 102.72 23.122 2304.1 2970.8 2282.6 1940.4 2280.8 2812.1 2174 2974 2365 1939 2358 2699 4 4 4 4 4 4 1000300 4681 3010;3014 4644 7510;7511;7512;7513 9837;9838;9839;9840 9837 4 ELVASGENK Unmodified 945.47673 0.47672516 334 O94925;O94925-3;O94925-2 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 4 0 1 38.835 38.835 2 4.2362E-05 9860 TMT1-3 120.99 24.736 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4682 334 4645 7514 9841 9841 1 ELVDDSVNNVR Unmodified 1258.6153 0.61534391 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 2 0 2 45.028 45.028 3 2.5713E-09 12967 TMT1-1 125.74 92.508 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4683 840 4646 7515;7516 9842;9843 9843 2 ELVDYFLNVATAQGR Unmodified 1694.8628 0.86278482 87 O00754-2;O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 0 0 0 0 0 8 0 1 86.591 86.591 3 0.0025381 27756 TMT1-7 63.128 43.805 30.63 36.452 50.874 44.139 48.95 68.959 29 37 51 44 51 66 2 2 2 2 2 2 5889.6 4684 87 4647 7517 9844;9845 9844 2 ELVEFAQDDDR Unmodified 1335.5943 0.59427411 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 2 0 1 54.001 54.001 2 0.00084644 16470 TMT1-1 101.35 65.838 23.281 21.226 36.616 21.213 34.592 60.841 22 22 36 22 36 58 1 1 1 1 1 1 6974.5 4685 1789 4648 7518 9846 9846 1 ELVEFAQDDDRLR Unmodified 1604.7794 0.77944912 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 1 2.5 0.5 1 1 52.878 52.878 3 6.8039E-13 16301 TMT1-2 155.39 135.71 107.86 114.38 169.58 83.241 150.8 157.73 102 117 167 88 153 152 2 2 2 2 2 2 36674 4686 1789 4649 7519;7520 9847;9848 9848 2 ELVEPVSR Unmodified 927.50255 0.50254598 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 3 0 1 40.464 40.464 2 0.0095391 11471 TMT1-2 100.39 45.678 130.57 128.44 127.81 125.04 94.927 175.31 123 131 131 123 102 167 1 1 1 1 1 1 19403 4687 1194 4650 7521 9849 9849 1 ELVEVIKK Unmodified 956.59063 0.59063271 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 1 6 0 1 51.298 51.298 3 0.004445 14661 TMT1-5 56.563 21.295 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4688 1785 4651 7522 9850 9850 1 ELVHPDALNR Unmodified 1162.6095 0.60947067 1320 P55273 CDKN2D Cyclin-dependent kinase 4 inhibitor D yes yes 0 0 0 0 0 4 0 1 38.041 38.041 3 0.037513 9609 TMT1-3 48.004 15.533 46.378 80.795 71.677 50.009 77.725 106.51 44 80 73 51 80 102 1 1 1 1 1 1 25948 4689 1320 4652 7523 9851 9851 1 ELVLDNCK Unmodified 989.48518 0.48518136 2311 Q92688-2;Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 0 5 0 1 48.775 48.775 2 0.00086817 13550 TMT1-4 147.29 77.021 241.62 385.16 362.38 257.56 267.02 439.03 229 383 368 260 281 419 1 1 1 1 1 1 37610 4690 2311 4653 7524 9852 9852 1 ELVLDNSR Unmodified 944.49271 0.49270958 1064 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 0 0 3.5 0.5 1 1 42.793 42.793 2 0.00069142 11329 TMT1-3 148.99 91.176 383.1 663.58 512.68 402.9 605.73 676.68 363 656 529 407 619 651 3 3 3 3 3 3 103240 4691 1064 4654 7525;7526 9853;9854;9855 9855 3 ELVNNLAEIYGR Unmodified 1389.7252 0.72522871 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 0 5.5 0.5 1 1 64.331 64.331 2 1.2992E-18 19746 TMT1-5 187.76 138.32 315.2 404.74 421.68 300.29 422.41 395.16 298 407 426 305 430 382 3 3 3 3 3 3 90115 4692 2802 4655 7527;7528 9856;9857;9858 9857 3 ELVNNLGEIYQK Unmodified 1418.7405 0.74054442 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 6 0 2 61.95 61.95 2;3 7.7721E-19 18838 TMT1-5 189.66 151.37 169.97 156.19 154.64 161.02 189.02 250.45 160 160 159 159 196 240 2 2 2 2 2 2 83098 4693 2654 4656 7529;7530 9859;9860 9859 2 ELVPESQAYMDLLAFER Unmodified 2009.9768 0.9768283 2332 Q92925-3;Q92925-2;Q92925;Q6STE5-2;Q96GM5-2;Q6STE5;Q96GM5 SMARCD2;SMARCD3;SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 0 0 5 0 1 80.879 80.879 3 0.013343 26065 TMT1-4 47.204 22.484 23.281 21.226 36.604 21.48 20.434 46.321 22 22 36 22 22 44 1 1 1 1 1 1 3411.1 4694 2332 4657 7531 9861 9861 1 ELVPPDTLHSLPK Unmodified 1444.7926 0.79257999 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 6 0 1 54.469 54.469 3 3.5217E-12 15911 TMT1-5 117.07 85.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4695 2325 4658 7532 9862 9862 1 ELVQTVLAR Unmodified 1027.6026 0.60259438 1334 P56377;P56377-2 AP1S2 AP-1 complex subunit sigma-2 yes no 0 0 0 0 0 7 0 1 54.088 54.088 2 0.043589 15106 TMT1-6 68.557 18.842 68.699 117.52 76.271 64.917 84.112 113.79 65 116 80 65 87 109 1 1 1 1 1 1 6102.9 4696 1334 4659 7533 9863 9863 1 ELVVDFLSYK Unmodified 1211.6438 0.64379049 1612 Q07817-2;Q07817-3;Q07817 BCL2L1 Bcl-2-like protein 1 yes no 0 0 0 0 0 7 0 1 78.271 78.271 2 0.0016197 24583 TMT1-6 101.97 70.745 85.15 70.998 55.784 51.247 62.256 98.428 80 73 58 51 65 94 1 1 1 1 1 1 12958 4697 1612 4660 7534 9864 9864 1 ELVVTQLGYDTR Unmodified 1392.7249 0.72489436 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 5 0 1 57.907 57.907 3 0.0026108 17088 TMT1-4 71.219 47.189 61.402 72.217 78.643 73.507 84.78 82.861 58 73 80 73 87 80 1 1 1 1 1 1 15930 4698 1559 4661 7535 9865 9865 1 ELVYPPDYNPEGK Unmodified 1519.7195 0.71947463 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 4 0 1 57.317 57.317 3 0.0023261 17232 TMT1-3 67.964 49.599 292.46 352.64 320.34 243.27 404.29 359.43 276 355 327 247 409 348 2 2 2 2 2 2 28390 4699 675 4662 7536 9866;9867 9867 2 ELWAALNAWK Unmodified 1200.6291 0.62914348 931 P28676 GCA Grancalcin yes yes 0 0 0 0 0 9 0 1 78.331 78.331 2 7.9922E-06 22892 TMT1-8 142.92 83.123 37.992 58.186 57.664 31.636 52.959 60.317 36 58 58 33 54 58 1 1 1 1 1 1 19367 4700 931 4663 7537 9868 9868 1 ELWFFLQSELKK Unmodified 1566.8446 0.84461556 2574 Q9BYC5-2;Q9BYC5 FUT8 Alpha-(1,6)-fucosyltransferase yes no 0 0 0 0 1 9 0 1 79.416 79.416 3 0.025534 23349 TMT1-8 48.568 29.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4701 2574 4664 7538 9869 9869 1 ELWFSDDPNVTK Unmodified 1449.6776 0.67760981 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 5 0 1 65.489 65.489 3 3.3681E-06 20057 TMT1-4 114.72 86.424 68.369 116.6 132.37 45.535 123.25 96.687 65 116 131 51 123 94 1 1 1 1 1 1 22407 4702 373 4665 7539 9870 9870 1 ELWLVIHGR Unmodified 1121.6346 0.63456321 157 O43169 CYB5B Cytochrome b5 type B yes yes 0 0 0 0 0 8 0 1 56.767 56.767 3 0.00029212 16318 TMT1-7 118.5 75.412 107.06 145.44 97.195 63.33 160.32 120.15 101 145 101 66 160 117 2 2 2 2 2 2 32004 4703 157 4666 7540 9871;9872 9872 2 ELWNQGAGLLAACFIAIVPGYISR Unmodified 2618.3679 0.36791376 2248 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 0 9 0 1 99.583 99.583 3 0.0029402 30882 TMT1-8 44.723 29.301 16.063 6.3649 0 7.651 0 23.452 15 7 0 7 0 22 1 1 0 1 0 1 1341.1 4704 2248 4667 7541 9873 9873 1 ELYAQFLR Unmodified 1038.5498 0.54983053 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 7 0 1 60.484 60.484 2 0.010962 17652 TMT1-6 98.523 51.441 53.587 86.995 117.24 62.463 84.774 97.785 51 87 116 65 87 94 1 1 1 1 1 1 12864 4705 2759 4668 7542 9874 9874 1 ELYLEEALQNER Unmodified 1505.7362 0.73618733 2746 Q9NTX5-6;Q9NTX5-2;Q9NTX5;Q9NTX5-3 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 0 3 0 1 63.251 63.251 3 3.3681E-06 20461 TMT1-2 114.72 95.589 30.767 35.754 28.447 14.166 28.393 37.566 29 36 29 15 29 36 1 1 1 1 1 1 6349.7 4706 2746 4669 7543 9875 9875 1 ELYLGLLYPTEDYK Unmodified 1715.8658 0.86580451 2906 Q9UL33-2;Q9UL33 TRAPPC2L Trafficking protein particle complex subunit 2-like protein yes no 0 0 0 0 0 6 0 1 78.627 78.627 3 0.00014655 25482 TMT1-5 82.202 63.127 15.658 45.171 35.228 20.98 51.371 29.448 15 44 36 22 51 29 1 1 1 1 1 1 3467.4 4707 2906 4670 7544 9876 9876 1 EMDEQIR Unmodified 919.40693 0.40693104 519;521 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 2 0 1 34.577 34.577 2 0.0095965 8783 TMT1-1 111.65 50.676 130.15 199.58 138.77 123.28 153.5 238.67 123 198 145 123 160 228 1 1 1 1 1 1 25739 4708 519;521 4671 7545 9877 9877 1 EMDLSVVR Unmodified 947.47462 0.47461667 798 P19838-2;P19838;P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 4 0 1 49.836 49.836 2 0.014846 14211 TMT1-3 93.429 42.463 77.229 109.23 92.246 56.563 70.9 83.257 73 109 94 58 73 80 1 1 1 1 1 1 7387.3 4709 798 4672 7546 9878 9878 1 EMDRETLIDVAR Unmodified 1446.7137 0.71367774 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 1 2.5 0.5 1 1 47.891 47.891 3 1.7096E-08 14272 TMT1-2 117.92 70.729 53.88 104 53.615 59.034 61.898 98.438 51 102 58 58 65 94 1 1 1 1 1 1 14903 4710 1068 4673 7547;7548 9879;9880 9880 2 EMEAELEDER Unmodified 1249.5132 0.5132466 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2.5 0.5 1 1 43.682 43.682 2 2.7513E-14 12465 TMT1-1 186.91 135.84 284.11 348.48 284.72 296.49 302.81 441.21 268 350 296 292 317 422 2 2 2 2 2 2 97597 4711 1019 4674 7549;7550 9881;9882;9883 9882 3 EMEAELEDERK Unmodified 1377.6082 0.60820962 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2 0 2 42.09 42.09 3;4 9.2897E-09 11736 TMT1-1 155.99 128.98 761.02 1293.3 843.95 771.11 783.27 1349.6 720 1277 887 765 827 1287 3 3 3 3 3 3 107220 4712 1019 4675 7551;7552 9884;9885;9886 9884 3 EMEENFAVEAANYQDTIGR Unmodified 2185.9586 0.95861206 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 64.786 64.786 3 6.0337E-61 21023 TMT1-2 209.25 192.54 219.09 341.21 218.5 221.47 259.1 322 207 338 231 219 268 309 7 7 7 7 7 7 196650 4713 575 4676 7553;7554;7555;7556 9887;9888;9889;9890;9891;9892;9893 9890 7 EMEENFAVEAANYQDTIGR Oxidation (M) 2201.9535 0.95352668 575 P08670 VIM Vimentin yes yes 0 0 1 0 0 2.5 0.5 1 1 59.697 59.697 3 2.8257E-30 18732 TMT1-1 147.9 139.9 85.668 139.53 91.062 65.654 123.11 104.15 81 138 95 66 124 101 4 4 4 3 4 4 30851 4714 575 4676 7557;7558 9894;9895;9896;9897 9894 106 4 EMGEAFAADIPR Unmodified 1305.6023 0.60233638 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 3 0 1 58.414 58.414 2 0.0037569 18547 TMT1-2 79.741 68.589 30.552 51.345 51.377 12.798 28.456 37.564 29 51 51 15 29 36 1 1 1 1 1 1 6710.7 4715 369 4677 7559 9898 9898 1 EMIFEVLAPLAENDAIK Unmodified 1901.9809 0.98085105 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 6 0 1 89.963 89.963 3 1.0481E-14 29606 TMT1-5 104.45 81.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4716 1264 4678 7560 9899 9899 1 EMKPVIFLDVFLPR Unmodified 1702.948 0.94803478 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 9 0 1 82.826 82.826 3 0.0082633 24679 TMT1-8 57.267 25.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4717 1507 4679 7561 9900 9900 1 EMLAAACQMFLGK Unmodified 1468.6877 0.68766269 318 O75955 FLOT1 Flotillin-1 yes yes 0 0 0 0 0 9 0 1 77.829 77.829 3 0.00064764 22738 TMT1-8 70.412 49.111 23.01 59.326 49.922 35.567 42.821 45.682 22 58 51 36 44 44 1 1 1 1 1 1 3619.5 4718 318 4680 7562 9901 9901 1 EMLEGFYEEISK Unmodified 1473.6697 0.66974724 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 74.713 74.713 3 0.00015181 23940 TMT1-3 95.018 84.164 46.484 57.344 73.802 33.872 57.301 52.731 44 58 73 36 58 51 1 1 1 1 1 1 4829.9 4719 3042 4681 7563 9902 9902 1 EMLHQIIQR Unmodified 1166.623 0.62301224 353 O95379-3;O95379-2;O95379;O95379-4 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes no 0 0 0 0 0 7 0 1 43.681 43.681 3 0.00041464 11023 TMT1-6 78.334 59.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4720 353 4682 7564 9903 9903 1 EMLQQSK Unmodified 862.42185 0.42185282 545;561 P08238;Q58FF7;P07900;P07900-2 HSP90AB1;HSP90AB3P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha no no 0 0 0 0 0 6 0 1 38.495 38.495 2 0.01017 9555 TMT1-5 109.21 18.15 161.84 134.29 97.657 86.069 170.24 227.53 152 138 102 87 174 218 1 1 1 1 1 1 18940 4721 561;545 4683 7565 9904 9904 1 EMLSVGLGFLR Unmodified 1220.6587 0.65872905 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 9 0 1 75.62 75.62 2 2.4257E-06 21862 TMT1-8 122.94 89.389 37.992 58.189 57.521 34.843 57.256 52.732 36 58 58 36 58 51 1 1 1 1 1 1 7619.5 4722 2107 4684 7566 9905 9905 1 EMNDAAMFYTNR Unmodified 1461.6017 0.60168445 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 4 0 1 53.316 53.316 2 4.0913E-69 15580 TMT1-3 248.6 199.41 77.245 116.83 83.129 80.957 81.249 175.7 73 116 87 80 87 167 1 1 1 1 1 1 29962 4723 1555;1556 4685 7567 9906 9906 1 EMNPALGIDCLHK Unmodified 1496.7116 0.71156925 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 6 0 1 53.907 53.907 3 6.3124E-11 15703 TMT1-5 133.48 122.38 184.42 196.75 216.47 149.8 182.5 242.1 174 200 218 152 189 232 1 1 1 1 1 1 44077 4724 1161 4686 7568 9907 9907 1 EMPNVFGK Unmodified 920.44259 0.44258826 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 57.319 57.319 2 0.014324 16410 TMT1-6 94.114 59.009 194.48 292.37 247.53 196.93 251.78 324.34 184 291 254 198 260 311 1 1 1 1 1 1 27688 4725 2654 4687 7569 9908 9908 1 EMPSVFGK Unmodified 893.43169 0.43168922 2802;2622 Q9NZN3;Q9NZN4;Q9NZN4-2;Q9H223 EHD3;EHD2;EHD4 EH domain-containing protein 3;EH domain-containing protein 2;EH domain-containing protein 4 no no 0 0 0 0 0 7 0 1 56.413 56.413 2 0.0069143 15995 TMT1-6 103.83 52.867 253.63 430.28 288.38 301.94 350.02 338.59 240 425 304 298 359 327 2 2 2 2 2 2 48451 4726 2802;2622 4688 7570 9909;9910 9909 2 EMQPTHPIR Unmodified 1107.5495 0.54951295 1471;909;984 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 0 0 0 4.8 2.86 1 1 1 1 1 28.139 28.139 3 1.9676E-05 5643 TMT1-3 150.61 99.804 302.08 548.48 341.74 348.21 394.01 518.56 286 540 362 344 409 497 6 6 6 6 6 6 107590 4727 909;984;1471 4689 7571;7572;7573;7574;7575 9911;9912;9913;9914;9915;9916 9913 6 EMQPTHPIR Oxidation (M) 1123.5444 0.54442757 1471;909;984 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 1 0 0 3.9 0.7 1 8 1 23.422 23.422 3 0.00082765 3785 TMT1-3 117.53 91.408 99.129 154.49 160.25 118.08 129.71 146.6 94 154 162 119 134 141 4 4 4 4 4 4 12391 4728 909;984;1471 4689 7576;7577;7578;7579;7580;7581;7582;7583;7584;7585 9917;9918;9919;9920;9921;9922;9923;9924;9925;9926;9927 9918 172 11 EMSGDLEEGMLAVVK Unmodified 1606.7582 0.75824468 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 4 0 1 72.436 72.436 3 0.00054265 23055 TMT1-3 73.91 47.762 62.535 87.421 55.66 58.765 69.736 114.2 59 87 59 58 73 109 2 2 2 2 2 2 8211 4729 1234 4690 7586 9928;9929 9928 2 EMVELPLR Unmodified 985.52665 0.52665224 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 3.5 0.5 1 1 56.876 56.876 2 0.0015257 18069 TMT1-2 87.323 66.376 240.47 355.71 219.38 179.83 262.28 315.51 227 353 231 181 269 303 1 1 1 1 1 1 52295 4730 1311 4691 7587;7588 9930;9931 9930 2 EMVLELIR Unmodified 1001.558 0.55795237 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 6 0 1 66.485 66.485 2 0.032875 20616 TMT1-5 79.713 0 85.115 78.456 55.317 51.679 40.761 84.117 80 80 58 51 44 80 1 1 1 1 1 1 14404 4731 2361 4692 7589 9932 9932 1 EMVNAWFAER Unmodified 1251.5706 0.57064232 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 6 0 1 62.073 62.073 2 0.0024422 18886 TMT1-5 99.343 68.425 46.332 80.665 79.603 42.292 56.108 76.217 44 80 80 44 58 73 1 1 1 1 1 1 8071.8 4732 322 4693 7590 9933 9933 1 EMVQNLMVLR Unmodified 1231.6417 0.64169877 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 7.5 0.5 1 1 63.317 63.317 2 0.00038054 18856 TMT1-7 120.33 62.047 77.491 93.765 61.382 65.801 84.328 106.33 73 94 65 65 87 102 1 1 1 1 1 1 12124 4733 655 4694 7591;7592 9934;9935 9935 2 EMVSQYLYTSK Unmodified 1347.6381 0.63805318 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 2 58.064 58.064 2;3 1.0099E-08 16730 TMT1-6 163.46 140.59 367.79 410.9 414.16 333.49 366.32 491.63 347 416 421 334 381 471 2 2 2 2 2 2 37556 4734 228 4695 7593;7594 9936;9937 9936 2 EMYTLGITNFPIPGEPGFPLNAIYAK Unmodified 2852.4459 0.44588931 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 8.5 0.5 3 3 93.526 93.526 3;4;5 2.0563E-13 28664 TMT1-8 81.48 65.714 331.53 360.17 436.8 286.32 361.56 486.44 313 365 437 292 373 466 13 12 14 14 13 14 56085 4735 130 4696 7595;7596;7597;7598;7599;7600 9938;9939;9940;9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951 9947 14 ENAAYFQFFSDVR Unmodified 1592.726 0.72595699 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 70.4 70.4 3 0.015112 22198 TMT1-5 52.527 30.329 38.207 43.675 33.793 52.657 56.987 36.75 36 44 36 51 58 36 1 1 1 1 1 1 6229.5 4736 1833 4697 7601 9952 9952 1 ENALQDSILAR Unmodified 1228.6412 0.64116473 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 52.389 52.389 2 0.0069153 15237 TMT1-3 83.182 78.57 69.049 72.083 55.814 50.935 78.745 75.571 65 73 58 51 80 73 1 1 1 1 1 1 8837.5 4737 1138 4698 7602 9953 9953 1 ENAPAIIFIDEIDAIATK Unmodified 1943.0252 0.025158703 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 5.5 0.5 1 1 96.632 96.632 3 3.0646E-10 32066 TMT1-4 108.18 73.458 78.419 125.67 58.642 106.23 93.73 113.52 74 124 62 102 98 109 3 3 2 3 3 3 15540 4738 1118 4699 7603;7604 9954;9955;9956;9957 9955 4 ENAYDLEANLAVLK Unmodified 1561.7988 0.79878758 2842 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 0 5 0 2 70.705 70.705 2;3 0.00078221 22125 TMT1-4 81.803 66.264 108.05 168.86 92.269 142.25 164.06 118.97 102 167 101 138 167 116 2 2 2 2 2 2 21142 4739 2842 4700 7605;7606 9958;9959 9959 2 ENDAHLVEVNLNNIK Unmodified 1720.8744 0.87441214 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 4 0 1 55.533 55.533 3 3.8566E-05 16455 TMT1-3 68.413 49.584 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4740 2788 4701 7607 9960 9960 1 ENDAVTIQVLNQLIQK Unmodified 1824.9945 0.99452728 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 7 0 1 80.751 80.751 3 9.2131E-09 25613 TMT1-6 110.38 79.841 46.673 57.87 41.576 52.188 57.265 29.28 44 58 44 51 58 29 1 1 1 1 1 1 7547.5 4741 2444 4702 7608 9961 9961 1 ENDYYTPTGEFR Unmodified 1490.6314 0.6313879 1141 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 0 3 0 1 48.06 48.06 2 5.9896E-10 14499 TMT1-2 131.54 115.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4742 1141 4703 7609 9962 9962 1 ENEFSFEDNAIR Unmodified 1469.6423 0.64228694 1800 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 0 2 0 1 55.135 55.135 2 2.9188E-05 16940 TMT1-1 91.701 79.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4743 1800 4704 7610 9963 9963 1 ENEITGALLPCLDESR Unmodified 1815.8673 0.86727785 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 3.33 0.471 2 1 68.218 68.218 2;3 5.471E-07 21341 TMT1-3 100.48 78.467 92.525 140.29 82.06 120.21 89.652 122.16 87 139 89 116 95 117 2 4 4 4 4 4 60964 4744 3006 4705 7611;7612;7613 9964;9965;9966;9967 9967 4 ENFIPTIVNFSAEEISDAIR Unmodified 2264.1325 0.13247732 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 2 93.122 93.122 3 0.0013948 30789 TMT1-5 43.176 24.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4745 1763 4706 7614;7615 9968;9969 9969 2 ENFQNWLK Unmodified 1077.5243 0.52434406 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 5.33 3.09 1 1 1 61.125 61.125 2 5.1547E-08 17847 TMT1-7 175.38 103.24 7117.8 8771.1 7978.9 6611.9 7995.9 11800 6719 8820 8166 6622 8322 11283 6 6 6 6 6 6 1351800 4746 1052 4707 7616;7617;7618 9970;9971;9972;9973;9974;9975 9974 6 ENFSCLTR Unmodified 1025.46 0.46002924 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 5 0 1 42.483 42.483 2 0.0051006 10997 TMT1-4 120.33 103.88 256.06 401.76 266.03 186.07 247.56 370.3 242 398 277 189 257 354 1 1 1 1 1 1 64867 4747 1074 4708 7619 9976 9976 1 ENGVYLIDVK Unmodified 1148.6077 0.60773933 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 0 1 59.469 59.469 2 8.4312E-05 17756 TMT1-4 141.08 123.65 445.19 604.95 587.37 522.78 445.84 816.63 421 606 600 518 476 778 2 2 2 2 2 2 79379 4748 831 4709 7620 9977;9978 9978 2 ENIFGESR Unmodified 950.44576 0.44575938 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 4 0 1 43.402 43.402 2 0.017525 11670 TMT1-3 90.761 45.994 227.46 345.42 251.12 211.18 295.95 420.09 215 343 261 212 306 402 1 1 1 1 1 1 26268 4749 1596 4710 7621 9979 9979 1 ENILEEFSK Unmodified 1107.5448 0.54480473 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 5 0 1 65.318 65.318 2 0.0020431 19986 TMT1-4 107.55 50.991 84.63 123.52 98.679 86.371 150.93 119.35 80 123 102 87 152 116 1 1 1 1 1 1 10128 4750 170 4711 7622 9980 9980 1 ENIWDGVTTK Unmodified 1161.5666 0.5666028 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 0 6 0 1 56.885 56.885 3 0.04504 16841 TMT1-5 45.257 15.197 130.07 175.62 171.7 120.76 183.33 165.33 123 176 174 123 186 160 1 1 1 1 1 1 10600 4751 501 4712 7623 9981 9981 1 ENIWSASEELLLR Unmodified 1558.7991 0.79912193 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 5 0 2 76.954 76.954 2;3 1.7463E-08 24627 TMT1-4 122.97 99.138 122.67 191.55 139.97 107.99 149.37 166.3 116 190 145 109 153 160 3 3 3 3 3 3 33166 4752 1723 4713 7624;7625 9982;9983;9984 9983 3 ENKPSIIFIDEIDSLCGSR Unmodified 2192.0783 0.078333261 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 1 5.5 0.5 1 1 73.101 73.101 3 0.00046361 23203 TMT1-5 63.044 49.589 91.666 208.02 106.95 126.11 161.87 204.32 87 203 116 124 167 196 3 3 3 3 3 3 22379 4753 267 4714 7626;7627 9985;9986;9987 9987 3 ENLATVEGNFASIDER Unmodified 1763.8326 0.83260691 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 2.5 0.5 1 1 61.152 61.152 3 1.0925E-35 19318 TMT1-1 193.64 171.49 162.65 196.09 88.647 150.19 159.96 227.82 153 196 95 145 167 218 4 4 3 4 4 4 53564 4754 1720 4715 7628;7629 9988;9989;9990;9991 9988 4 ENLEEEAIIMK Unmodified 1317.6486 0.64861787 2810 Q9P0J0;Q9P0J0-2 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 0 0 0 0 0 2 0 1 61.411 61.411 3 0.0052239 19390 TMT1-1 67.456 35.817 69.134 72.32 41.318 35.972 48.556 91.356 65 73 44 36 51 87 1 1 1 1 1 1 3905.6 4755 2810 4716 7630 9992 9992 1 ENLEQAFEVAER Unmodified 1433.6787 0.67867245 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 2 0 2 59.943 59.943 2;3 0.0012467 18821 TMT1-1 77.078 53.227 54.208 42.312 50.745 36.479 49.852 52.943 51 44 51 37 51 51 2 2 2 2 2 2 8016.7 4756 2935 4717 7631;7632 9993;9994 9993 2 ENLLDFIK Unmodified 990.5386 0.53859714 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 6.5 0.5 1 1 72.89 72.89 2 0.0034465 23194 TMT1-5 131.44 52.943 829.95 1160.9 912.61 857.72 1249.4 1000.5 784 1158 947 856 1265 972 3 3 3 3 3 3 173060 4757 530 4718 7633;7634 9995;9996;9997 9995 3 ENLLEEQGSIALR Unmodified 1470.7678 0.7678218 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 58.359 58.359 2 0.0020468 18577 TMT1-2 80.96 48.013 30.725 35.635 35.712 21.252 35.397 37.366 29 36 36 22 36 36 1 1 1 1 1 1 5228.4 4758 1737 4719 7635 9998 9998 1 ENLLKDNCAPESIEFPVSEAR Unmodified 2417.1533 0.15328912 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 4.67 0.471 1 2 60.964 60.964 3;4 5.3862E-31 18253 TMT1-4 146.19 122.39 275.17 393.4 307.36 287.45 246.98 434.28 260 392 319 284 263 414 4 4 4 4 4 4 93219 4759 484 4720 7636;7637;7638 9999;10000;10001;10002 10000 4 ENLLLSDSPSCR Unmodified 1389.6558 0.65582851 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 49.872 49.872 2 7.6433E-09 14202 TMT1-3 149.93 99.142 68.862 102.86 61.195 58.735 53.776 122.12 65 102 65 58 58 116 1 1 1 1 1 1 21222 4760 251 4721 7639 10003 10003 1 ENLPLIVWLLVK Unmodified 1435.8803 0.88027279 236 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 0 0 9 0 1 99.532 99.532 3 0.00072064 30840 TMT1-8 73.881 51.853 15.861 21.992 20.717 37.875 12.645 38.015 15 22 22 36 15 36 1 1 1 1 1 1 2489.1 4761 236 4722 7640 10004 10004 1 ENLPSHFK Unmodified 970.48723 0.48723027 2244 Q8TBX8-2;Q8TBX8 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes no 0 0 0 0 0 6 0 1 39.103 39.103 3 0.017687 9826 TMT1-5 64.711 35.138 192.1 228.01 161.33 130.11 183.86 259.12 181 229 168 131 190 248 1 1 1 1 1 1 13784 4762 2244 4723 7641 10005 10005 1 ENLVFLAQK Unmodified 1060.5917 0.59169534 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 7 0 1 61.21 61.21 2 4.3673E-06 17897 TMT1-6 163.32 102.64 246.22 295.97 205.62 252.73 207.08 241.4 232 297 218 246 217 232 2 2 2 2 2 2 23227 4763 1093;1253 4724 7642 10006;10007 10006 2 ENMPSHFK Unmodified 988.44365 0.44365089 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 6 0 1 36.461 36.461 3 0.029872 8786 TMT1-5 55.461 26.735 244.35 492.58 354.13 419.16 418.06 484.83 232 484 373 410 434 466 1 1 1 1 1 1 29814 4764 1152;1153 4725 7643 10008 10008 1 ENNAVYAFLGLTAPPGSK Unmodified 1847.9418 0.94176342 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 0 8 0 1 76.971 76.971 3 1.1812E-06 24235 TMT1-7 90.22 68.97 215.03 290.33 223.09 211.69 299.68 280.33 203 290 232 211 305 271 2 2 2 2 2 2 88082 4765 269 4726 7644 10009;10010 10010 2 ENPLLPEEEEQR Unmodified 1481.6998 0.69980182 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 2 0 1 48.162 48.162 2 0.00053347 14135 TMT1-1 98.406 67.609 15.857 21.981 21.428 21.937 44.254 22.189 15 22 22 22 44 22 1 1 1 1 1 1 11175 4766 1501 4727 7645 10011 10011 1 ENPSEEAQNLVEFTDEEGYGR Unmodified 2412.0353 0.035342051 1651 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 0 2 0 1 66.481 66.481 3 8.9713E-14 21232 TMT1-1 106.42 99.322 31.868 36.837 22.854 23.782 14.062 15.589 30 37 22 22 15 15 2 2 1 1 1 1 8072.8 4767 1651 4728 7646 10012;10013 10012 2 ENPVYEK Unmodified 877.41815 0.41814765 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 3.5 0.5 1 1 38.885 38.885 2 0.012357 9804 TMT1-3 103.56 24.095 283.55 459.17 285.11 333.17 385.56 388.75 268 454 304 327 396 375 2 2 2 2 2 2 80748 4768 1132 4729 7647;7648 10014;10015 10015 2 ENPYYDSR Unmodified 1042.4356 0.43558863 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 2.5 0.5 1 1 33.784 33.784 2 0.0017914 8499 TMT1-1 140.11 26.49 200.07 275.34 225.46 180.3 217.98 264.54 189 275 232 181 225 254 3 3 3 3 3 3 50522 4769 1540 4730 7649;7650 10016;10017;10018 10016 3 ENQTAVDVFR Unmodified 1177.5728 0.57275081 1847 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 0 0 3.5 0.5 1 1 46.352 46.352 2 2.1098E-06 13793 TMT1-2 159.93 130.77 76.668 138.96 161.38 67.73 129.8 119.95 73 138 160 73 131 116 1 1 1 1 1 1 25255 4770 1847 4731 7651;7652 10019;10020 10019 2 ENQWFDVGVIK Unmodified 1333.6667 0.6666512 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 6 0 1 68.829 68.829 3 0.0014201 21601 TMT1-5 82.362 43.728 37.922 74.182 55.814 51.639 41.313 68.111 36 73 58 51 44 65 1 1 1 1 1 1 7798.6 4771 1248 4732 7653 10021 10021 1 ENSETVVTGSLDDLVK Unmodified 1704.8418 0.84177461 2601 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 0 0 0 0 3.5 0.5 1 1 64.935 64.935 3 3.1806E-16 20071 TMT1-3 137.89 117.78 93.179 139.02 91.432 57.178 98.854 151.75 88 138 95 59 102 145 2 2 2 2 2 2 15922 4772 2601 4733 7654;7655 10022;10023 10023 2 ENTAAENGLTVR Acetyl (N-term) 1315.6368 0.63680763 1642 Q12789-3;Q12789 GTF3C1 General transcription factor 3C polypeptide 1 yes no 1 0 0 0 0 2 0 1 34.969 34.969 2 0.0034958 8970 TMT1-1 56.258 22.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4773 1642 4734 7656 10024 10024 1 ENTEFTDHELQEWYK Unmodified 1967.8537 0.85373628 1051 P37235 HPCAL1 Hippocalcin-like protein 1 yes yes 0 0 0 0 0 4 0 1 57.934 57.934 3 5.8426E-11 17426 TMT1-3 125.52 111.69 107.66 179.65 148.67 100.41 117.79 182.12 102 178 152 102 123 174 1 1 1 1 1 1 32946 4774 1051 4735 7657 10025 10025 1 ENTEGEYSGIEHVIVDGVVQSIK Unmodified 2501.2286 0.22856255 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 4 0 1 75.066 75.066 4 1.6182E-23 24104 TMT1-3 126.31 108.49 69.005 71.959 63.391 51.05 48.669 67.901 65 73 65 51 51 65 1 1 1 1 1 1 7643.2 4775 1213 4736 7658 10026 10026 1 ENTHQTLK Unmodified 969.48796 0.48795855 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 0 7 0 1 26.52 26.52 3 0.029733 4503 TMT1-6 55.567 29.053 15.899 17.781 17.853 10.683 14.664 15.572 15 18 18 11 15 15 1 1 1 1 1 1 605.04 4776 2775 4737 7659 10027 10027 1 ENTQQHITAR Unmodified 1196.5898 0.58979786 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 5 0 1 21.05 21.05 3 0.0016829 3591 TMT1-4 86.189 69.054 1.0191 6.2523 3.768 4.0348 5.9867 3.0272 1 6 4 4 6 3 1 1 1 1 1 1 427.51 4777 564 4738 7660 10028 10028 1 ENTQTTIK Unmodified 933.47673 0.47672516 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 4 0 1 33.156 33.156 2 0.0058162 7573 TMT1-3 113.66 69.211 279.76 234.01 212.07 211.83 269.2 131.96 263 241 219 210 271 131 2 2 2 2 2 2 38893 4778 1409;1410 4739 7661 10029;10030 10029 2 ENVATTDTLESTTVGTSV Unmodified 1823.8636 0.86363226 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 2 0 1 60.407 60.407 3 3.8037E-06 19031 TMT1-1 86.367 69.967 15.855 21.975 21.77 14.273 43.816 14.74 15 22 22 15 43 15 1 1 1 1 1 1 9554.7 4779 1820 4740 7662 10031 10031 1 ENVEAAQSYR Unmodified 1165.5364 0.53636531 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 2 0 2 33.463 33.463 2;3 0.00081966 8347 TMT1-1 105.83 72.189 123.13 120.52 122.51 85.542 119.52 182.07 116 123 124 87 124 174 2 2 2 2 2 2 21343 4780 2135 4741 7663;7664 10032;10033 10032 2 ENVIMSQILPCIK Unmodified 1543.8102 0.81022067 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 8 0 1 73.575 73.575 3 0.00036675 22878 TMT1-7 82.069 53.263 54.095 57.109 57.158 42.631 109.23 82.163 51 58 58 44 109 80 1 1 1 1 1 1 10902 4781 956 4742 7665 10034 10034 1 ENVLIGDGAGFK Unmodified 1218.6245 0.62445203 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 58.482 58.482 3 2.7982E-06 17295 TMT1-4 115.12 95.285 130.61 128.56 120.92 85.187 143.39 127.03 123 131 123 87 145 123 1 1 1 1 1 1 18595 4782 653 4743 7666 10035 10035 1 ENVLLSSELQR Unmodified 1286.683 0.68302954 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-4;Q14BN4-5;Q14BN4-8 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 4 0 1 52.638 52.638 2 0.0011846 15345 TMT1-3 99.539 61.182 146.81 135.31 97.293 94.565 126.44 181.88 138 138 102 94 131 174 1 1 1 1 1 1 13518 4783 1806 4744 7667 10036 10036 1 ENVLVETLNHEMYEAK Unmodified 1917.9142 0.91422805 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 4 0 1 65.986 65.986 3 8.1854E-12 20542 TMT1-3 124.43 105.36 46.359 95.852 62.067 51.148 47.602 98.846 44 94 65 51 51 94 1 1 1 1 1 1 14694 4784 908 4745 7668 10037 10037 1 ENVNLAQIR Unmodified 1055.5724 0.57235688 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 0 4 0 1 44.114 44.114 2 0.0059866 11934 TMT1-3 96.034 55.765 123.06 128.96 127.48 132.53 162.64 173.38 116 131 131 131 167 167 1 1 1 1 1 1 21961 4785 1154 4746 7669 10038 10038 1 ENVNSLLPVFEEFLK Unmodified 1776.9298 0.92980175 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 7 0 1 92.415 92.415 3 0.00024171 29944 TMT1-6 57.148 36.485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4786 2308 4747 7670 10039 10039 1 ENVNVEEMFNCITELVLR Unmodified 2208.0555 0.055489329 1841 Q15286 RAB35 Ras-related protein Rab-35 yes yes 0 0 0 0 0 7 0 1 102.05 102.05 3 0.0011841 33134 TMT1-6 57.989 40.708 7.3475 15.221 14.588 15.526 0 15.99 7 15 15 15 0 15 1 1 1 1 0 1 2260.3 4787 1841 4748 7671 10040 10040 1 ENVPENSRPATGYPLPPQIFNESQYR Unmodified 3002.4522 0.45224833 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 1 5 0 1 59.011 59.011 4 4.7232E-08 17601 TMT1-4 75.226 73.116 130.16 197.44 138.94 146.61 191.04 210.95 123 196 146 145 196 203 2 2 2 2 2 2 16202 4788 269 4749 7672 10041;10042 10042 2 EPAAAISRPR Unmodified 1066.5883 0.5883413 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 1 5 0 1 28.89 28.89 3 0.0039036 5672 TMT1-4 82.489 28.735 123.48 106.37 76.683 64.484 105.85 151.55 116 109 80 65 109 145 1 1 1 1 1 1 6920.4 4789 2887 4750 7673 10043 10043 1 EPAAEIEALLGMDLVR Unmodified 1725.8971 0.89712142 1640 Q12765-3;Q12765;Q12765-2 SCRN1 Secernin-1 yes no 0 0 0 0 0 5 0 1 90.892 90.892 3 7.9254E-06 29966 TMT1-4 89.624 62.288 23.469 0 23.028 14.755 14.221 23.046 22 0 22 15 15 22 1 0 1 1 1 1 3096.6 4790 1640 4751 7674 10044 10044 1 EPAFEDITLESER Unmodified 1534.7151 0.71511753 273 O75400-2;O75400-3;O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 0 2 0 1 59.707 59.707 3 0.00045034 18742 TMT1-1 63.185 41.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4791 273 4752 7675 10045 10045 1 EPAHLMSLFGGK Unmodified 1285.6489 0.64889264 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 8.75 0.433 1 3 59.973 59.973 2;3;4 1.3465E-08 15709 TMT1-8 135.56 102.75 460.08 577.66 632.18 475.03 634.56 562.86 435 582 638 480 646 545 5 5 5 5 5 5 124970 + 4792 506 4753 7676;7677;7678;7679 10046;10047;10048;10049;10050 10049 5 EPAHLMSLFGGKPMIIYK Oxidation (M) 2047.0635 0.06347524 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 1 0 1 9 0 1 64.354 64.354 4 1.2423E-07 17471 TMT1-8 76.82 64.517 92.442 77.429 87.184 41.273 86.262 82.818 87 80 87 44 87 80 1 1 1 1 1 1 5854.1 + 4793 506 4754 7680 10051 10051 73 1 EPAHLMSLFGGKPMIIYK Unmodified 2031.0686 0.068560618 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 1 9 0 2 67.747 67.747 3;4 4.5622E-14 18767 TMT1-8 115.31 97.735 293.13 412.96 337.34 266.3 404.69 621.66 277 412 347 269 419 594 1 1 1 1 1 1 28965 + 4794 506 4754 7681;7682 10052;10053 10052 2 EPALVLK Unmodified 768.47454 0.47454032 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 6 0 1 52.009 52.009 2 0.0453 14902 TMT1-5 83.843 33.804 177.18 321.24 245.57 276.91 247.67 245.57 168 317 257 271 257 237 1 1 1 1 1 1 25656 4795 1658 4755 7683 10054 10054 1 EPAVLELEGK Unmodified 1083.5812 0.58119023 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 3 0.816 1 1 1 57.89 57.89 2 0.00010724 17214 TMT1-3 138.66 111.99 418.33 637.98 565.2 566.03 540.93 670 396 635 583 558 564 643 3 3 3 3 3 3 133590 4796 1555;1556 4756 7684;7685;7686 10055;10056;10057 10057 3 EPAVLELEGKK Unmodified 1211.6762 0.67615325 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 5.5 0.5 1 1 51.768 51.768 3 0.0020997 14836 TMT1-4 83.617 64.872 682.86 1041.9 667.04 766.41 722.38 1179.7 645 1033 709 750 763 1126 3 3 3 3 3 3 82539 4797 1555;1556 4757 7687;7688 10058;10059;10060 10059 3 EPCVESLVSQYFQTVTDYGK Unmodified 2349.0835 0.083478218 433 P02652 APOA2 Apolipoprotein A-II;Proapolipoprotein A-II;Truncated apolipoprotein A-II yes yes 0 0 0 0 0 7 0 1 89.197 89.197 3 2.5441E-13 28783 TMT1-6 83.213 66.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4798 433 4758 7689 10061 10061 1 EPDVLILDEPTNNLDIESIDALGEAINEYK Unmodified 3341.6402 0.64022784 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 5 0 1 95.703 95.703 4 0.045617 31718 TMT1-4 21.925 15.562 0 0 6.8619 15.986 0 15.99 0 0 7 15 0 15 0 0 1 1 0 1 959.2 4799 2219 4759 7690 10062 10062 1 EPEDEEEEEEEEEEDEDEDLEELEVLER Unmodified 3492.3595 0.35949328 2708 Q9NQC3-2;Q9NQC3;Q9NQC3-4 RTN4 Reticulon-4 no no 0 0 0 0 0 3 0 2 74.946 74.946 3;4 1.1071E-06 25037 TMT1-2 65.801 63.896 16.02 14.88 0 23.786 13.805 30.058 15 15 0 22 15 29 1 1 0 1 1 2 6641.2 4800 2708 4760 7691;7692 10063;10064 10063 2 EPEEELYDLSK Unmodified 1350.6191 0.61909188 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 2.33 0.471 2 1 60.279 60.279 2;3 0.0042211 19044 TMT1-1 88.596 73.906 92.187 115.57 97.68 94.349 136.71 96.303 87 116 101 94 138 94 3 3 3 3 3 3 20935 4801 2112 4761 7693;7694;7695 10065;10066;10067 10066 3 EPELFQTVAEGLR Unmodified 1487.762 0.76200815 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 5 0 2 69.611 69.611 2;3 1.6897E-12 21681 TMT1-4 157.03 93.842 122.52 197.6 160.25 178.83 153.64 160.2 116 196 167 175 160 153 3 3 3 3 3 2 38175 4802 2654 4762 7696;7697 10068;10069;10070 10070 3 EPEVLSTMAIIVNK Unmodified 1542.8327 0.83273025 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 1 76.867 76.867 3 2.1409E-05 24126 TMT1-6 92.856 69.252 46.618 81.462 30.809 92.099 61.44 67.537 44 80 37 87 65 65 2 2 2 2 2 2 8283.4 4803 121 4763 7698 10071;10072 10072 2 EPFGTEGR Unmodified 891.40865 0.4086456 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 2.5 0.5 1 1 36.228 36.228 2 0.0042075 9604 TMT1-1 77.072 36.869 114.96 224.98 144.52 131.8 147.52 157.82 109 221 152 131 152 152 1 1 1 1 1 1 17080 4804 655 4764 7699;7700 10073;10074 10073 2 EPFPTIYVDSQKENER Unmodified 1950.9323 0.93232095 203 O43776;O43776-2 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 5 0 1 54.325 54.325 3 0.0020336 15710 TMT1-4 54.768 37.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4805 203 4765 7701 10075 10075 1 EPFTIAQGK Unmodified 989.5182 0.51819605 1028 P35659 DEK Protein DEK yes yes 0 0 0 0 0 6 0 1 51.02 51.02 3 0.00453 14552 TMT1-5 76.679 38.376 99.43 153.17 110.88 111.01 80.93 144.8 94 152 116 109 87 138 1 1 1 1 1 1 11002 4806 1028 4766 7702 10076 10076 1 EPGQDLVVLPLSITTDFIPSFR Unmodified 2443.2999 0.299877 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 7 0 1 97.664 97.664 3 7.3641E-10 31669 TMT1-6 90.534 14.888 10.643 19.317 10.848 20.718 26.328 28.031 10 19 12 20 27 27 1 2 2 2 2 2 8740.6 4807 409 4767 7703 10077;10078 10077 2 EPGQDLVVLPLTITSDFIPSFR Unmodified 2443.2999 0.299877 33 CON__Q2UVX4 yes yes 0 0 0 0 0 7 0 1 97.604 97.604 4 0.0032115 31733 TMT1-6 42.041 8.8536 16.095 0 0 16.291 5.5174 30.757 15 0 0 15 7 29 1 0 0 1 1 1 2856.4 + 4808 33 4768 7704 10079 10079 1 EPIPSLEAIYLLSPTEK Unmodified 1899.0241 0.024096071 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 82.965 82.965 3 1.1188E-07 26500 TMT1-6 99.451 82.957 177.55 140.75 156.88 154.83 161.85 196.86 167 146 160 153 168 189 3 3 3 3 3 3 27045 4809 1878 4769 7705;7706 10080;10081;10082 10082 3 EPISVSSEQVLK Unmodified 1314.7031 0.70309628 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 4.67 0.471 1 2 53.577 53.577 2;3 6.9205E-10 15373 TMT1-4 154.66 132.57 571.77 621.02 579.23 548.19 573.65 563.53 539 629 595 543 591 544 4 4 4 4 4 4 187840 4810 406 4770 7707;7708;7709 10083;10084;10085;10086 10085 4 EPLIYESDRDGAIEDIITDLR Unmodified 2432.2071 0.20709883 356 O95466-2 FMNL1 Formin-like protein 1 yes yes 0 0 0 0 1 3 0 1 76.532 76.532 3 2.5168E-18 25643 TMT1-2 100.28 84.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4811 356 4771 7710 10087 10087 1 EPLMEEYSIATQVWK Unmodified 1822.8811 0.881137 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 5 0 1 77.072 77.072 3 0.0048638 24660 TMT1-4 57.328 39.839 0 53.948 18.9 37.423 42.479 53.154 0 51 22 36 44 51 0 1 1 1 1 1 4801.1 4812 1552 4772 7711 10088 10088 1 EPLPPIQQHIWNMLNPPAEVTTK Unmodified 2652.3734 0.37339307 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 8 0 2 73.549 73.549 3;4 2.6654E-09 22810 TMT1-7 83.039 63.317 92.208 108.08 100.54 64.476 88.771 222.39 87 109 102 66 95 211 2 2 2 2 2 2 21593 4813 676 4773 7712;7713 10089;10090 10089 2 EPNPPIDEVISTPGVVAR Unmodified 1888.9894 0.9894419 1262 P52294 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 0 0 0 0 0 3 0 1 62.235 62.235 3 0.0073506 20030 TMT1-2 49.188 45.463 15.787 36.897 20.512 22.43 20.941 30.316 15 36 22 22 22 29 1 1 1 1 1 1 5762.5 4814 1262 4774 7714 10091 10091 1 EPNVLICFIDK Unmodified 1346.6904 0.69042311 427 P01903 HLA-DRA HLA class II histocompatibility antigen, DR alpha chain yes yes 0 0 0 0 0 7 0 1 74.557 74.557 2 0.0001173 23201 TMT1-6 112.43 74.269 38.004 65.777 49.093 43.802 72.55 52.296 36 65 51 44 73 51 1 1 1 1 1 1 11701 4815 427 4775 7715 10092 10092 1 EPPGTNTVILEYAHR Unmodified 1695.858 0.8580338 2523 Q9BSF0 C2orf88 Small membrane A-kinase anchor protein yes yes 0 0 0 0 0 4 0 1 49.812 49.812 3 0.0087035 14217 TMT1-3 52.862 31.802 115.34 151.56 142.73 100.6 126.41 174.41 109 152 145 102 131 167 1 1 1 1 1 1 8776.5 4816 2523 4776 7716 10093 10093 1 EPPLELKDTDAAVGDNIGYITFVLFPR Unmodified 2989.5437 0.5436891 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 7 0 2 88.86 88.86 3;4 0.00026471 28709 TMT1-6 51.956 45.451 99.236 153.71 143.09 115.91 125.2 189.37 94 153 146 116 131 181 2 2 2 2 2 2 32078 4817 129 4777 7717;7718 10094;10095 10095 2 EPPLLLGVLHPNTK Unmodified 1526.8821 0.8820637 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 8 0 1 62.974 62.974 3 1.2351E-05 18748 TMT1-7 97.797 75.156 146.05 188.24 180.17 106.13 120.44 127.68 138 189 182 109 124 123 2 2 2 2 2 2 9467.3 4818 2697 4778 7719 10096;10097 10097 2 EPPPEFEFIADPPSISAFDLDVVK Unmodified 2658.3105 0.31050127 1860 Q15459 SF3A1 Splicing factor 3A subunit 1 yes yes 0 0 0 0 0 5 0 1 91.463 91.463 4 0.012387 30265 TMT1-4 37.56 23.688 7.2559 14.966 30.196 5.561 15.435 0 7 15 29 7 15 0 1 1 1 1 1 0 2854.5 4819 1860 4779 7720 10098 10098 1 EPQLAFHQR Unmodified 1124.5727 0.57269123 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 5 0 1 35.733 35.733 3 0.016844 8307 TMT1-4 60.167 39.168 191.96 213.59 197 150.49 207.61 210.47 181 216 201 152 212 203 1 1 1 1 1 1 8356 4820 162 4780 7721 10099 10099 1 EPSEVPTPK Unmodified 982.49713 0.49712625 755 P17096-3;P17096;P17096-2 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 0 0 4 0 1 40.331 40.331 2 0.0020089 10482 TMT1-3 108.3 78.118 161.22 211.35 136.53 154.24 200.1 149.93 152 211 145 152 203 146 2 2 2 2 2 2 10814 4821 755 4781 7722 10100;10101 10101 2 EPSPPIDEVINTPR Unmodified 1562.794 0.79403656 232 O60684 KPNA6 Importin subunit alpha-7 yes yes 0 0 0 0 0 3 0 1 55.419 55.419 3 0.00085942 17371 TMT1-2 73.022 51.722 23.211 36.142 35.714 21.385 28.318 30.106 22 36 36 22 29 29 1 1 1 1 1 1 5359.9 4822 232 4782 7723 10102 10102 1 EPVVTLEGHTK Unmodified 1208.6401 0.6401021 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 4.5 0.5 1 1 41.501 41.501 3 3.5955E-08 10965 TMT1-3 113.65 88.212 361.06 445.04 435.83 287.56 589.52 450.09 341 448 441 297 591 438 2 2 2 2 2 2 25013 4823 971 4783 7724;7725 10103;10104;10105 10103 3 EPWLLPSQHNDIIR Unmodified 1716.8948 0.89475365 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 6 0 1 57.018 57.018 3 1.0243E-14 16876 TMT1-5 134.4 106.54 123.12 136.69 109.99 150.31 85.939 159.58 116 138 116 145 94 152 1 1 1 1 1 1 73731 4824 1792 4784 7726 10106 10106 1 EQADFALEALAK Unmodified 1304.6612 0.66123147 2091 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH14 Myosin-14 yes no 0 0 0 0 0 3.33 1.7 1 1 1 66.299 66.299 3 5.8993E-06 20389 TMT1-4 112.95 0 5155.6 6611.8 6502.4 4874.5 6085 6868.4 4872 6643 6601 4919 6257 6606 10 10 10 10 10 10 818040 4825 2091 4785 7727;7728;7729 10107;10108;10109;10110;10111;10112;10113;10114;10115;10116 10114 10 EQAEAEVASLNR Unmodified 1315.6368 0.63680763 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 2.6 1.02 1 1 2 1 42.945 42.945 2;3 5.0365E-19 12442 TMT1-2 190.66 18.446 821.05 1245.9 894.05 747.94 1043.1 1065 776 1237 930 751 1065 1027 6 6 6 6 6 6 482770 4826 519;520;521 4786 7730;7731;7732;7733;7734 10117;10118;10119;10120;10121;10122 10120 6 EQAEAEVASLNRR Unmodified 1471.7379 0.73791866 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 2.5 0.5 1 1 38.258 38.258 3 6.4117E-13 10588 TMT1-2 154.86 9.7953 788.02 947.32 745.91 665.86 530 1067.9 743 952 773 659 571 1016 3 3 3 3 3 3 155460 4827 519;520;521 4787 7735;7736 10123;10124;10125 10125 3 EQAELTGLR Unmodified 1015.5298 0.52982336 2415 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 0 3 0 1 41.274 41.274 2 0.0026764 11815 TMT1-2 74.849 19.318 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4828 2415 4788 7737 10126 10126 1 EQDDGILQIQK Unmodified 1285.6514 0.65139506 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 4 0 1 54.794 54.794 3 0.00015724 16163 TMT1-3 72.34 38.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4829 2596 4789 7738 10127 10127 1 EQDDLLVLLADQDQK Unmodified 1741.8734 0.87340909 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 3 0 1 76.337 76.337 3 6.9987E-08 25552 TMT1-2 110.97 86.547 31.965 28.472 13.679 15.308 14.452 15.578 30 29 15 15 15 15 1 1 1 1 1 1 3034.1 4830 237 4790 7739 10128 10128 1 EQDHIIIIPR Unmodified 1232.6877 0.68772099 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 4 0 1 45.158 45.158 3 7.6213E-05 12362 TMT1-3 88.134 55.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4831 2854 4791 7740 10129 10129 1 EQDLQLEELR Unmodified 1271.6357 0.635745 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 2 0 2 52.047 52.047 2;3 0.00044544 15794 TMT1-1 117.14 44.811 170.37 148.65 94.942 126.7 110.78 168.46 160 152 102 123 117 161 3 3 3 3 3 3 25983 4832 237 4792 7741;7742 10130;10131;10132 10131 3 EQEAQVEQLLGMVEGLVLEHK Unmodified 2378.2152 0.21516109 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 6 0 1 97.17 97.17 4 0.00015088 32162 TMT1-5 60.747 53.646 15.932 14.635 14.983 6.4834 14.601 23.035 15 15 15 7 15 22 1 1 1 1 1 1 3979.9 4833 2279 4793 7743 10133 10133 1 EQEELLAPADGTVELVR Unmodified 1867.9527 0.95272204 800 P19971 TYMP Thymidine phosphorylase yes yes 0 0 0 0 0 2 0 1 63.843 63.843 3 1.6484E-07 20400 TMT1-1 97.095 73.996 38.743 97.153 78.649 42.344 56.399 67.681 37 95 80 44 58 65 2 2 2 2 2 2 27974 4834 800 4794 7744 10134;10135 10135 2 EQEGEYYCTAFNR Unmodified 1665.6729 0.67293514 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 3 0 1 46.864 46.864 3 5.1112E-11 14020 TMT1-2 135.81 127.41 61.535 63.954 63.238 66.113 61.829 90.978 58 65 65 65 65 87 1 1 1 1 1 1 31436 4835 740 4795 7745 10136 10136 1 EQELQQTLQQEQSVLDQLR Unmodified 2312.1608 0.16081734 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3.5 0.5 1 1 74.438 74.438 3 3.7418E-12 23795 TMT1-3 93.92 87.948 15.89 14.518 22.194 14.794 14.769 7.0406 15 15 22 15 15 7 1 1 1 1 1 1 2888.9 4836 1833 4796 7746;7747 10137;10138 10138 2 EQEVNILK Unmodified 971.52876 0.52876073 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.4 1.36 1 1 2 1 49.219 49.219 2;3 0.00093854 13842 TMT1-3 122.19 53.805 4019.1 5395.6 5044.2 3817.2 5029.6 6029.7 3799 5405 5137 3854 5174 5791 6 6 6 6 6 6 2099600 4837 1019 4797 7748;7749;7750;7751;7752 10139;10140;10141;10142;10143;10144 10141 6 EQEVNILKK Unmodified 1099.6237 0.62372375 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3.5 2.5 1 1 46.327 46.327 3 0.00064482 12510 TMT1-5 107.24 49.646 5191.9 7123.1 4665.3 4107.3 3125.2 9162.6 4898 7097 4900 4066 3469 8679 2 2 2 2 2 2 317700 4838 1019 4798 7753;7754 10145;10146 10146 2 EQEVSAAWQALLDACAGR Unmodified 1973.9265 0.92652407 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 1 78.762 78.762 2 8.4562E-05 24821 TMT1-6 62.287 41.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4839 651 4799 7755 10147 10147 1 EQFLDGDGWTSR Unmodified 1409.6212 0.62115757 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 4.25 0.433 3 1 57.289 57.289 2;3 1.8841E-55 17266 TMT1-3 232.19 207.73 670.76 876.59 676.75 553.86 718.53 905.85 633 877 700 556 741 869 5 5 5 5 5 5 591410 4840 918 4800 7756;7757;7758;7759 10148;10149;10150;10151;10152 10150 5 EQFVEFR Unmodified 953.46068 0.46068117 209 O43852;O43852-3;O43852-2;O43852-4;O43852-15 CALU Calumenin yes no 0 0 0 0 0 4 0 1 49.683 49.683 2 0.0079527 14110 TMT1-3 121.67 60.883 291.66 338.36 287.16 278.8 305.83 437.93 275 341 297 276 319 419 2 2 2 2 2 2 82890 4841 209 4801 7760 10153;10154 10153 2 EQFWEQAK Unmodified 1064.4927 0.49270958 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 5.33 0.471 2 1 52.226 52.226 2;3 0.0054031 14903 TMT1-4 118.18 66.323 553 670.45 625.75 532.43 624.71 833.91 522 675 640 532 648 799 3 3 3 3 3 3 67690 4842 1897 4802 7761;7762;7763 10155;10156;10157 10155 3 EQFYHSCK Unmodified 1097.46 0.46002924 2425 Q96JB5-2;Q96JB5;Q96JB5-4 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 0 0 0 0 0 5 0 1 33.818 33.818 3 0.028594 7594 TMT1-4 56.432 22.565 108.13 106.5 130.68 92.549 127.85 143.46 102 109 131 94 131 138 1 1 1 1 1 1 5145.2 4843 2425 4803 7764 10158 10158 1 EQGFETK Unmodified 837.38685 0.38684752 1318 P55263-3;P55263-4;P55263-2;P55263 ADK Adenosine kinase yes no 0 0 0 0 0 4 0 1 37.307 37.307 2 0.019968 9257 TMT1-3 97.635 35.673 146.14 211.14 146.61 99.952 148.69 166.32 138 210 152 102 152 160 1 1 1 1 1 1 13425 4844 1318 4804 7765 10159 10159 1 EQGLFHK Unmodified 857.43955 0.43955179 2064 Q709C8-3;Q709C8 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 6 0 1 39.426 39.426 3 0.016092 9949 TMT1-5 72.485 45.883 68.878 79.162 78.597 64.33 107.98 89.661 65 80 80 65 109 87 1 1 1 1 1 1 7294.1 4845 2064 4805 7766 10160 10160 1 EQGQNLAR Unmodified 914.45699 0.45699277 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 0 2.5 1.12 1 1 1 1 24.25 24.25 2 0.0013366 5016 TMT1-2 142.79 48.783 903.42 1164.1 1185.3 917.98 842.3 1200.8 854 1170 1202 919 885 1149 7 7 7 7 7 7 381630 4846 1384;1447 4806 7767;7768;7769;7770 10161;10162;10163;10164;10165;10166;10167 10165 7 EQGVEEHETLLLR Unmodified 1551.7893 0.78928553 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.2 1.17 2 1 1 1 44.253 44.253 2;3 6.629E-17 12869 TMT1-1 174.94 167.35 969.38 1096.1 977.49 930.04 1033.9 1118.6 914 1107 1007 922 1066 1077 6 6 6 6 6 6 462990 4847 3010 4807 7771;7772;7773;7774;7775 10168;10169;10170;10171;10172;10173 10169 6 EQGVLSFWR Unmodified 1120.5665 0.56654322 665;488 P05141;P12236 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 0 7.5 0.5 1 1 63.961 63.961 2;3 0.00010695 19078 TMT1-6 150.35 89.669 527.71 821.54 600.57 581.19 668.99 788.94 499 815 627 576 691 758 3 3 3 3 3 3 121570 4848 488;665 4808 7776;7777 10174;10175;10176 10175 3 EQGVTFPSGDIQEQLIR Unmodified 1915.964 0.96395543 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 4 0 1 63.463 63.463 3 2.3301E-10 19578 TMT1-3 87.275 65.443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4849 1176 4809 7778 10177 10177 1 EQHAAELK Unmodified 924.46649 0.46649483 1943 Q4V328-4;Q4V328;Q4V328-3 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 3 0 1 28.916 28.916 3 0.02321 6874 TMT1-2 60.518 39.73 69.003 71.953 63.758 42.798 79.412 67.024 65 73 65 44 80 65 1 1 1 1 1 1 6150.7 4850 1943 4810 7779 10178 10178 1 EQIDIFEGIK Unmodified 1190.6183 0.61830402 2419 Q96I99;Q96I99-2 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 5 0 1 67.942 67.942 3 0.0011978 21016 TMT1-4 89.805 36.567 76.952 139.76 112.93 85.408 156.96 188.47 73 138 116 87 160 181 1 1 1 1 1 1 12948 4851 2419 4811 7780 10179 10179 1 EQIDNLATELCR Unmodified 1460.6929 0.6929423 346 O95295 SNAPIN SNARE-associated protein Snapin yes yes 0 0 0 0 0 3 0 1 59.099 59.099 3 0.00015654 18822 TMT1-2 94.688 65.98 30.818 35.895 19.819 37.629 28.605 0 29 36 22 36 29 0 1 1 1 1 1 0 5720.4 4852 346 4812 7781 10180 10180 1 EQILEEFSK Unmodified 1121.5605 0.56045479 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 4.5 0.5 1 1 62.47 62.47 2;3 0.0012892 19243 TMT1-3 121.6 61.584 185.1 171.65 123.48 133.49 124.1 197.93 174 175 130 131 131 189 2 2 2 2 2 2 20829 4853 226;227 4813 7782;7783 10181;10182 10181 2 EQILGDEAR Unmodified 1029.5091 0.50908792 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 2 0 1 40.183 40.183 2 1.2714E-05 11035 TMT1-1 129.28 67.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4854 1736 4814 7784 10183 10183 1 EQISDIDDAVR Unmodified 1259.5994 0.59935949 1294 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 0 2 0 1 48.29 48.29 2 9.5859E-32 14183 TMT1-1 209.97 128.78 354.47 474.04 254.94 302.12 388.44 437.7 334 472 276 297 399 421 2 2 2 2 2 2 140030 4855 1294 4815 7785 10184;10185 10184 2 EQIVGPLESPVEDSLWPYK Unmodified 2185.0943 0.094300901 3006 Q9Y3Z3;Q9Y3Z3-4 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 5.5 0.5 1 1 78.938 78.938 3 4.6059E-10 25324 TMT1-4 100.67 82.754 207.95 205.7 222.32 173.69 172.47 258.38 196 210 225 174 181 247 2 2 2 2 2 2 71308 4856 3006 4816 7786;7787 10186;10187;10188 10186 3 EQIVPKPEEEVAQK Unmodified 1622.8516 0.85155143 781 P18621-3;P18621;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 1 4 0 1 46.64 46.64 3 3.2993E-05 12927 TMT1-3 94.487 76.624 263.75 374.76 258.94 210.74 352.98 343.84 249 373 270 213 358 332 2 2 2 2 2 2 41255 4857 781 4817 7788 10189;10190 10189 2 EQIYDVYR Unmodified 1084.5189 0.51892433 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 0 3 0 1 47.262 47.262 2 0.0026313 14179 TMT1-2 135.71 72.501 153.71 200.01 145.17 146.33 186.09 172.71 145 200 152 145 190 167 1 1 1 1 1 1 32374 4858 1059 4818 7789 10191 10191 1 EQLAALK Unmodified 771.44905 0.44905385 2880 Q9UII2 ATPIF1 ATPase inhibitor, mitochondrial yes no 0 0 0 0 0 6 0 1 46.813 46.813 2 0.0094733 12928 TMT1-5 112.17 0 130.29 197.82 115.68 109.62 139.6 204.95 123 196 123 109 145 196 1 1 1 1 1 1 40921 4859 2880 4819 7790 10192 10192 1 EQLAALKK Unmodified 899.54402 0.54401687 2880 Q9UII2 ATPIF1 ATPase inhibitor, mitochondrial yes yes 0 0 0 0 1 8 0 1 43.729 43.729 3 0.0046008 11076 TMT1-7 93.649 45.366 529.54 1146.8 738.8 731.77 651.25 982.39 503 1123 779 721 687 939 1 1 1 1 1 1 79290 4860 2880 4820 7791 10193 10193 1 EQLAIAEFAR Unmodified 1146.6033 0.60332266 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 4.5 0.5 1 1 57.465 57.465 2 0.00038546 17235 TMT1-3 120.09 79.987 322.84 441.27 370.24 336.29 356.46 531.36 305 441 382 334 373 508 3 3 3 3 3 3 82679 4861 770 4821 7792;7793 10194;10195;10196 10194 3 EQLDMAGAR Unmodified 989.46003 0.46002924 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 3 0 1 38.125 38.125 2 0.007228 10564 TMT1-2 63.734 29.881 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4862 1762 4822 7794 10197 10197 1 EQLEEEEEAK Unmodified 1232.5408 0.54084156 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2 0 1 41.121 41.121 3 3.7002E-05 11363 TMT1-1 129.82 75.621 314.51 439.52 508.11 378.02 490.55 378.29 298 441 511 382 498 368 2 2 2 2 2 2 84445 4863 1019 4823 7795 10198;10199 10198 2 EQLEEEEEAKHNLEK Unmodified 1853.8643 0.86430096 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 2.2 0.748 1 2 2 44.737 44.737 4;5 5.9137E-20 13002 TMT1-2 166.35 145.62 7165.6 9734.5 9412.9 6735.4 8799.3 9285.3 6776 9751 9550 6827 9013 8946 11 11 11 11 11 11 1093700 4864 1019 4824 7796;7797;7798;7799;7800 10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210 10207 11 EQLEHIK Unmodified 895.47633 0.47633123 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 4 0 1 36.565 36.565 3 0.0042016 9008 TMT1-3 96.311 26.406 371.37 545.68 420.43 302.18 441.92 555.57 351 543 433 307 454 533 2 2 2 2 2 2 85204 4865 1083 4825 7801 10211;10212 10212 2 EQLIDMNAEGDETGVMDSLLEALQSGAAFR Unmodified 3209.4857 0.48565823 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 1 102.02 102.02 4 0.027387 33719 TMT1-5 26.826 19.38 0 7.3885 3.5588 7.3149 6.5897 11.538 0 7 4 7 7 11 0 1 1 1 1 1 843.62 4866 228 4826 7802 10213 10213 1 EQLIQEGLLDR Unmodified 1312.6987 0.69867961 2840 Q9UBN7 HDAC6 Histone deacetylase 6 yes yes 0 0 0 0 0 3 0 1 59.381 59.381 2 0.00641 18962 TMT1-2 84.198 55.24 30.776 44.412 19.648 30.006 27.665 37.587 29 44 22 29 29 36 1 1 1 1 1 1 3996.2 4867 2840 4827 7803 10214 10214 1 EQLLLEELVSLVNQR Unmodified 1781.9887 0.98871362 2173 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 95.397 95.397 3 8.2351E-05 31027 TMT1-6 82.663 61.114 39.48 27.969 13.436 14.335 59.907 20.677 37 29 14 14 58 21 3 3 2 2 2 3 4828.9 4868 2173 4828 7804;7805 10215;10216;10217 10217 3 EQLQLLEEQHR Unmodified 1421.7263 0.72629134 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 44.883 44.883 3 1.5625E-05 13128 TMT1-2 114.24 90.635 207.42 298.14 232.38 187.9 256.65 225.06 196 297 240 189 261 218 3 3 3 3 3 3 34867 4869 1833 4829 7806;7807 10218;10219;10220 10219 3 EQLRQEQALLEEIER Unmodified 1882.9749 0.97485447 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2 0 1 61.138 61.138 3 6.1903E-17 19268 TMT1-1 143.93 114.99 54.229 57.482 34.308 44.979 56.79 52.745 51 58 37 44 58 51 2 2 2 2 2 2 8229.7 4870 1833 4830 7808 10221;10222 10221 2 EQLSLLDR Unmodified 972.52401 0.52400971 408 P01011;P01011-2 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes no 0 0 0 0 0 4 0 1 50.606 50.606 2 0.0063949 14474 TMT1-3 105.78 80.21 115.36 167.79 126.58 101.3 140.53 188.94 109 167 131 102 145 181 1 1 1 1 1 1 23116 4871 408 4831 7809 10223 10223 1 EQLTEEAR Unmodified 974.46689 0.46688876 2846 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 0 2 0 1 32.146 32.146 2 0.016037 7824 TMT1-1 91.867 49.268 38.245 43.781 27.268 28.975 58.332 29.249 36 44 29 29 58 29 1 1 1 1 1 1 5717.5 4872 2846 4832 7810 10224 10224 1 EQLWLANEGLITR Unmodified 1541.8202 0.82019173 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 6 0 1 66.633 66.633 2 0.00044293 20734 TMT1-5 94.023 60.614 77.411 70.877 94.215 63.98 77.082 106.53 73 73 94 65 80 102 1 1 1 1 1 1 16042 4873 1139 4833 7811 10225 10225 1 EQMQPTHPIR Unmodified 1235.6081 0.60809046 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 4 0 1 28.374 28.374 3 4.8696E-05 5702 TMT1-3 126.71 93.619 85.064 78.314 64.023 50.761 61.985 106.96 80 80 66 51 65 102 2 2 2 2 2 2 11100 4874 1588 4834 7812 10226;10227 10226 2 EQNELIR Unmodified 900.46649 0.46649483 2456 Q96T51;Q96T51-2 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 2 0 1 35.189 35.189 2 0.025711 9066 TMT1-1 93.162 14.392 61.564 56.479 64.707 43.181 56.067 76.218 58 58 65 44 58 73 1 1 1 1 1 1 6488.5 4875 2456 4835 7813 10228 10228 1 EQNILAQVFGILK Unmodified 1471.8399 0.83986454 1782 Q14571 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 0 0 0 0 0 9 0 1 89.864 89.864 3 0.00036089 27343 TMT1-8 73.91 49.528 93.518 85.999 79.385 34.657 55.946 91.146 88 88 80 37 58 87 2 2 2 2 2 2 7021.8 4876 1782 4836 7814 10229;10230 10229 2 EQNLQDIK Unmodified 986.50327 0.50327426 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4 ADD1 Alpha-adducin yes no 0 0 0 0 0 4 0 1 42.906 42.906 2 0.014718 11497 TMT1-3 93.598 24.751 99.575 162.21 78.869 112.94 79.778 175.75 94 160 87 109 87 167 1 1 1 1 1 1 7721.1 4877 1023 4837 7815 10231 10231 1 EQNSLDSWGPK Unmodified 1259.5782 0.57823012 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5 0 1 50.314 50.314 2 1.4911E-16 14099 TMT1-4 182.93 142.15 115.47 105.5 160.78 121.89 157.67 119.16 109 109 160 123 160 116 1 1 1 1 1 1 47712 4878 565 4838 7816 10232 10232 1 EQNYSDDVLANMISEPR Unmodified 1979.8895 0.88946986 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 3 0 2 66.112 66.112 2;3 1.7466E-05 21605 TMT1-2 68.751 52.497 30.816 35.889 20.185 29.408 57.763 45.256 29 36 22 29 58 44 1 1 1 1 1 1 13341 4879 482 4839 7817;7818 10233;10234 10234 2 EQPFGEGVPLDGDDPEHIQWIFQK Unmodified 2780.3082 0.30820986 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 5 0 1 76.981 76.981 3 3.9206E-23 24597 TMT1-4 117.35 103.33 30.847 28.42 21.288 14.721 21.551 22.837 29 29 22 15 22 22 1 1 1 1 1 1 5032.3 4880 2241 4840 7819 10235 10235 1 EQPLDEELKDAFQNAYLELGGLGER Unmodified 2833.377 0.3770177 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 1 5 0 1 89.209 89.209 4 2.3578E-14 29329 TMT1-4 97.94 85.744 30.882 20.963 21.718 15.101 0 23.452 29 22 22 15 0 22 1 1 1 1 0 1 3983.8 4881 481 4841 7820 10236 10236 1 EQQTLQVAVATGGR Unmodified 1456.7634 0.76340513 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 4 0 1 44.721 44.721 3 1.0019E-05 12181 TMT1-3 99.069 73.422 91.83 99.473 171.25 67.554 107.83 89.665 87 102 167 73 109 87 1 1 1 1 1 1 6726.6 4882 1275 4842 7821 10237 10237 1 EQSILELGSLLAK Unmodified 1399.7922 0.79224564 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 7 0 2 80.266 80.266 2;3 1.2946E-05 25448 TMT1-6 103.76 83.38 183.91 285.99 226.29 173.52 226.69 233.38 174 284 233 175 232 225 3 3 3 3 3 3 36993 4883 54 4843 7822;7823 10238;10239;10240 10239 3 EQSLDALQTHYDELQAR Unmodified 2015.9548 0.95484731 1621 Q08378-4;Q08378-2;Q08378 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 0 3 0 1 52.589 52.589 3 9.9705E-07 16262 TMT1-2 91.317 74.993 30.685 44.158 35.2 21.282 35.395 37.366 29 44 36 22 36 36 1 1 1 1 1 1 5171.4 4884 1621 4844 7824 10241 10241 1 EQTADGVAVIPVLQR Unmodified 1594.8679 0.8678702 2895 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 0 4 0 1 60.198 60.198 3 0.00076134 18269 TMT1-3 71.241 48.324 46.634 65.316 41.84 36.227 33.352 76.866 44 65 44 36 36 73 1 1 1 1 1 1 12287 4885 2895 4845 7825 10242 10242 1 EQVANSAFVER Unmodified 1248.6099 0.6098646 561 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 0 3.5 0.5 1 1 40.855 40.855 2 7.2346E-17 11663 TMT1-2 187.85 134.1 308.08 345.73 225.53 241.91 312.49 323.67 290 348 239 239 320 312 3 3 3 3 3 3 100290 4886 561 4846 7826;7827 10243;10244;10245 10243 3 EQVGHIR Unmodified 837.4457 0.4456998 1836 Q15208 STK38 Serine/threonine-protein kinase 38 yes yes 0 0 0 0 0 3 0 1 23.167 23.167 3 0.023617 4604 TMT1-2 64.567 36.055 23.413 21.593 14.142 15.147 21.532 22.838 22 22 15 15 22 22 1 1 1 1 1 1 3530.7 4887 1836 4847 7828 10246 10246 1 EQVTNVGGAVVTGVTAVAQK Unmodified 1927.0375 0.037454724 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 0 6.5 0.5 1 1 64.369 64.369 3 1.1764E-35 19198 TMT1-6 157.14 132.86 276.75 318.11 285.47 224.33 243.54 344.83 261 321 292 225 254 330 3 3 3 3 3 3 70045 4888 1054 4848 7829;7830 10247;10248;10249 10248 3 EQWANLEQLSAIR Unmodified 1556.7947 0.79470526 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 66.307 66.307 2 8.7574E-05 20580 TMT1-5 81.239 41.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4889 1546 4849 7831 10250 10250 1 EQWDTIEELIR Unmodified 1430.7042 0.70415892 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 74.838 74.838 2 2.924E-08 23950 TMT1-3 156.14 87.295 116.1 181.9 170.95 130.63 183.93 226.07 110 181 174 132 189 217 3 3 3 3 3 3 47861 4890 1900 4850 7832;7833 10251;10252;10253 10252 3 EQWPQCPTIK Unmodified 1285.6125 0.61250714 544 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 0 6 0 1 51.542 51.542 3 0.0043005 14741 TMT1-5 74.76 53.92 121.93 282.3 188.16 167.17 220.57 267.67 116 276 197 167 227 257 1 1 1 1 1 1 28498 4891 544 4851 7834 10254 10254 1 EQYELVHR Unmodified 1072.5302 0.53015772 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 3 0 1 33.9 33.9 3 0.0047534 8946 TMT1-2 85.731 60.808 77.292 85.657 101.64 71.825 101.37 58.935 73 87 102 73 102 58 1 1 1 1 1 1 40184 4892 1592 4852 7835 10255 10255 1 EQYEQILAFVQGTVAEGAPIIPISAQLK Unmodified 3012.6172 0.61718839 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 8 0 1 100.29 100.29 5 0.029297 32782 TMT1-7 25.054 17.778 0 7.3861 3.7057 4.0216 6.8877 7.2655 0 7 4 4 7 7 0 1 1 1 1 1 1107.9 4893 1077 4853 7836 10256 10256 1 EQYPGIEIESR Unmodified 1319.6357 0.635745 2518 Q9BRT3 MIEN1 Migration and invasion enhancer 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 48.818 48.818 2 8.7246E-06 14445 TMT1-1 126.19 61.374 38.2 43.657 34.857 28.808 43.132 45.673 36 44 36 29 44 44 1 1 1 1 1 1 6355.4 4894 2518 4854 7837;7838 10257;10258 10257 2 ERDDILR Unmodified 915.47739 0.47739386 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 3 0 1 30.404 30.404 3 0.011486 7440 TMT1-2 89.296 1.2669 30.666 27.916 52.147 27.067 80.905 44.595 29 29 51 29 80 44 1 1 1 1 1 1 5160.4 4895 776 4855 7839 10259 10259 1 ERDFYFGK Unmodified 1060.4978 0.49779495 1868;1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15691 MAPRE2;MAPRE1 Microtubule-associated protein RP/EB family member 2;Microtubule-associated protein RP/EB family member 1 no no 0 0 0 0 1 6 0 1 46.505 46.505 3 0.029301 12735 TMT1-5 65.719 37.321 440.47 555.31 520.43 417.05 410.25 562.87 416 558 531 417 429 539 1 1 1 1 1 1 29837 4896 1862;1868 4856 7840 10260 10260 1 ERDVYEELLTQAEIQGNINK Unmodified 2361.1812 0.18121843 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 5 0 1 67.797 67.797 4 0.0078267 20974 TMT1-4 45.047 33.904 130.38 181.87 115.23 141.21 146.79 166.37 123 181 123 138 152 160 1 1 1 1 1 1 15271 4897 1139 4857 7841 10261 10261 1 EREEYVLNDIGVIFYGEVNDIK Unmodified 2613.2962 0.29624819 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 5 0 1 82.201 82.201 4 6.0814E-09 26718 TMT1-4 83.039 60.386 68.86 62.922 95.402 49.022 55.029 98.634 65 65 94 51 58 94 2 2 2 2 2 2 5782.1 4898 393 4858 7842 10262;10263 10263 2 ERELEEAR Unmodified 1030.5043 0.5043369 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 1.5 0.5 1 1 25.922 25.922 3 0.0019416 5390 TMT 1-phospho 116.73 26.089 183.43 188.4 210.54 197.04 188.56 246.2 173 192 214 195 197 236 3 3 3 3 3 3 25700 4899 3010;3014 4859 7843;7844 10264;10265;10266 10264 3 ERELLGK Unmodified 843.48142 0.48141661 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 5 0 1 37.836 37.836 3 0.024977 9168 TMT1-4 75.213 9.1397 282.63 484.48 238.67 272.99 303.69 416.67 267 477 260 268 316 399 1 1 1 1 1 1 17459 4900 2525 4860 7845 10267 10267 1 ERIPEAPAGPPSDFGLFLSDDDPK Unmodified 2569.2336 0.23364793 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4.67 0.471 1 2 69 69 3;5 8.575E-22 21397 TMT1-4 105.17 88.383 146.62 119.66 143.09 132 140.95 135.62 138 124 145 131 145 131 2 2 2 2 2 2 46509 4901 3010 4861 7846;7847;7848 10268;10269;10270 10270 3 ERLEEEK Unmodified 931.46108 0.4610751 2903 Q9UL16-2;Q9UL16;O14782 CFAP45;KIF3C Cilia- and flagella-associated protein 45;Kinesin-like protein KIF3C yes no 0 0 0 0 1 4 0 1 29.701 29.701 3 0.026327 6266 TMT1-3 74.255 0 46.408 95.987 53.792 66.681 61.546 98.448 44 94 58 65 65 94 1 1 1 1 1 1 2795.9 4902 2903 4862 7849 10271 10271 1 ERPLAADDLR Unmodified 1154.6044 0.60438529 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 1 2 0 1 34.789 34.789 3 0.011984 8901 TMT1-1 68.44 29.419 46.392 88.389 62.864 43.311 54.998 107.16 44 87 65 44 58 102 1 1 1 1 1 1 7830.3 4903 2061 4863 7850 10272 10272 1 ERPPEEVAAR Unmodified 1152.5887 0.58873523 1913 Q16891-2;Q16891-4;Q16891 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 1 2 0 1 26.721 26.721 3 2.6649E-05 5781 TMT1-1 141.89 81.368 68.984 87.01 54.233 66.33 78.843 52.116 65 87 58 65 80 51 1 1 1 1 1 1 8594.5 4904 1913 4864 7851 10273 10273 1 ERPPNPIEFLASYLLK Unmodified 1886.0302 0.030184502 2592 Q9C005 DPY30 Protein dpy-30 homolog yes yes 0 0 0 0 1 9 0 2 89.514 89.514 3;4 1.6884E-05 27237 TMT1-8 75.463 48.127 53.849 80.169 78.93 57.209 78.713 68.11 51 80 80 58 80 66 2 2 2 2 2 2 10534 4905 2592 4865 7852;7853 10274;10275 10274 2 ERPPPVPNPDYEPIR Unmodified 1774.9002 0.90023296 542 P07766 CD3E T-cell surface glycoprotein CD3 epsilon chain yes yes 0 0 0 0 1 3 0 1 44.652 44.652 3 2.2867E-15 13089 TMT1-2 140.3 127.74 100.84 131.36 73.137 112.98 95.739 167.83 95 131 80 109 102 160 2 2 2 2 2 2 17055 4906 542 4866 7854 10276;10277 10276 2 ERQEAEEAK Unmodified 1088.5098 0.5098162 894 P26038 MSN Moesin yes yes 0 0 0 0 1 1.5 0.5 1 1 23.751 23.751 3 0.0056693 4719 TMT1-1 80.24 9.3313 125.54 90.888 103.28 95.353 123.72 46.571 118 95 105 95 124 47 2 2 2 2 2 2 12613 4907 894 4867 7855;7856 10278;10279 10279 2 ESAAHDYTLR Unmodified 1161.5415 0.54145068 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 2.5 0.5 1 1 30.837 30.837 3 0.00048379 7601 TMT1-2 99.174 57.173 124.49 122.31 73.583 112.49 120.11 128.76 117 124 80 109 124 124 2 2 2 2 2 2 15970 4908 1600 4868 7857;7858 10280;10281 10281 2 ESAALSEVLAGPLAQR Unmodified 1610.8628 0.86278482 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 5.5 0.5 1 1 67.467 67.467 3 6.99E-06 20936 TMT1-4 69.729 41.432 38.081 58.437 42.331 35.453 72.934 52.285 36 58 44 36 73 51 1 1 1 1 1 1 7599.6 4909 1530 4869 7859;7860 10282;10283 10282 2 ESADPLGAWLQDAR Unmodified 1527.7318 0.73177065 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4.5 0.5 1 1 70.146 70.146 2 6.5241E-14 21861 TMT1-4 132.56 119.36 84.958 93.128 69.324 81.859 77.066 83.081 80 94 73 80 80 80 2 2 2 2 2 2 24204 4910 1833 4870 7861;7862 10284;10285 10285 2 ESAFEFLSSA Unmodified 1086.487 0.4869555 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 4.5 0.5 1 1 77.73 77.73 2 0.00072424 24812 TMT1-4 108.7 84.725 122.91 151.21 133.4 139.65 171.75 142.21 116 152 138 138 175 138 3 3 3 3 3 3 67152 4911 1074 4871 7863;7864 10286;10287;10288 10287 3 ESAGLIPSPELQEWR Unmodified 1710.8577 0.85769944 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 4 0 1 65.176 65.176 2 0.002215 20253 TMT1-3 56.122 22.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4912 1534 4872 7865 10289 10289 1 ESAINVAEGK Unmodified 1016.5138 0.51383895 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 4 0 1 44.027 44.027 2 0.00055809 11938 TMT1-3 113.69 58.452 92.291 92.119 100.15 94.788 105.52 120.65 87 94 102 94 109 116 1 1 1 1 1 1 11649 4913 2890 4873 7866 10290 10290 1 ESALLFDAEK Unmodified 1121.5605 0.56045479 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 4 0 1 59.466 59.466 2 0.00017477 17994 TMT1-3 131.52 65.165 115.5 136.9 128.09 108.97 134.42 143.27 109 138 131 109 138 138 1 1 1 1 1 1 14453 4914 2791 4874 7867 10291 10291 1 ESCDSALR Unmodified 936.39709 0.39709463 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 2 0 1 27.674 27.674 2 0.0059639 6055 TMT1-1 111.65 74.09 108.24 138.09 86.492 143.35 123.94 189.41 102 138 94 138 131 181 1 1 1 1 1 1 30937 4915 1277 4875 7868 10292 10292 1 ESCLEAYTGIVQGLK Unmodified 1666.8236 0.82362212 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 6 0 1 69.93 69.93 3 1.527E-10 21970 TMT1-5 119.01 84.33 146.33 141.5 173.98 113.59 150.43 127.89 138 145 174 116 153 124 2 2 2 2 2 2 21080 4916 1803 4876 7869 10293;10294 10293 2 ESDLNGAQIK Unmodified 1073.5353 0.53530267 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 3 0 1 44.282 44.282 3 0.022186 12868 TMT1-2 53.597 37.399 130.53 135.88 128.81 92.527 134.92 150.72 123 138 131 94 138 145 1 1 1 1 1 1 264340 4917 816 4877 7870 10295 10295 1 ESDLSHVQNK Unmodified 1155.552 0.55201537 170 O43390;O43390-3;O43390-2 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 4 0 1 33.248 33.248 3 0.0037009 7589 TMT1-3 76.345 39.788 61.55 80.183 47.06 67.354 47.113 91.398 58 80 51 65 51 87 1 1 1 1 1 1 14989 4918 170 4878 7871 10296 10296 1 ESDTGLAPPALWDLAADK Unmodified 1868.9156 0.91560825 1033 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 0 5 0 1 77.782 77.782 3 1.9781E-06 24898 TMT1-4 89.049 69.211 61.444 72.335 71.426 65.324 77.827 83.059 58 73 73 65 80 80 1 1 1 1 1 1 15624 4919 1033 4879 7872 10297 10297 1 ESDVPLKTEEFEVTK Unmodified 1749.8673 0.86726108 2347 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 0 0 1 4 0 1 55.546 55.546 3 9.4562E-19 16436 TMT1-3 157.03 91.23 237.37 456.8 294.64 249.12 291.41 440.47 225 449 309 249 304 421 2 2 2 2 2 2 36697 4920 2347 4880 7873 10298;10299 10298 2 ESDYFTPQGEFR Unmodified 1474.6365 0.63647328 2248 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 0 3 0 2 53.54 53.54 2;3 3.7398E-08 16630 TMT1-2 134.3 80.238 99.631 138.62 89.378 103.09 104.84 129.19 94 138 95 101 109 124 2 2 2 2 2 2 36416 4921 2248 4881 7874;7875 10300;10301 10300 2 ESEAVEWQQK Unmodified 1232.5673 0.56733108 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2.6 1.02 1 1 2 1 45.499 45.499 2;3 9.6426E-29 13459 TMT1-2 209.6 136.53 1132.2 1573.6 1166.4 1055.6 1255.4 1598.4 1069 1569 1214 1051 1299 1533 6 6 6 6 6 6 492970 4922 894 4882 7876;7877;7878;7879;7880 10302;10303;10304;10305;10306;10307;10308 10305 7 ESEFDDEPK Unmodified 1094.4404 0.44039923 2976 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 0 2 0 1 42.022 42.022 3 0.0031371 11775 TMT1-1 80.438 61.167 68.699 117.52 76.266 65.031 78.097 75.589 65 116 80 65 80 73 1 1 1 1 1 1 5846 4923 2976 4883 7881 10309 10309 1 ESEIIDFFLGASLK Unmodified 1567.8134 0.81337501 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 8 0 1 93.479 93.479 3 0.0076561 30321 TMT1-7 55.213 35.819 30.793 29.349 29.575 21.741 28.814 15.168 29 30 30 22 29 15 1 1 1 1 1 1 1146.1 4924 727 4884 7882 10310 10310 1 ESEIIDFFLGASLKDEVLK Unmodified 2152.1304 0.13035206 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 1 7 0 2 90.052 90.052 3;4 6.8111E-18 29086 TMT1-6 127.78 95.095 161.94 177.92 223.82 182.64 156.61 251.37 153 181 225 182 166 240 3 3 3 3 3 3 23758 4925 727 4885 7883;7884 10311;10312;10313 10313 3 ESEKELALVK Unmodified 1144.634 0.63395408 814 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 1 5 0 1 47.462 47.462 3 0.01919 13000 TMT1-4 63.537 31.039 202.42 345.02 311.96 184.82 226.16 325.07 192 342 316 190 235 311 1 1 1 1 1 1 25051 4926 814 4886 7885 10314 10314 1 ESELKPLVGESR Unmodified 1342.7092 0.70924429 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 1 4 0 1 44.552 44.552 3 0.037243 12137 TMT1-3 51.726 34.4 123.01 160.11 110.02 118.18 108.84 205.83 116 160 116 116 116 196 1 1 1 1 1 1 10006 4927 2064 4887 7886 10315 10315 1 ESEPQAAAEPAEAK Unmodified 1426.6576 0.65760265 1513 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 0 0 2 0 1 37.099 37.099 3 2.2694E-06 9822 TMT1-1 103.3 79.225 61.469 56.213 80.985 42.486 41.44 76.635 58 58 80 44 44 73 1 1 1 1 1 1 8805.2 4928 1513 4888 7887 10316 10316 1 ESESAPGDFSLSVK Unmodified 1451.678 0.67800374 1464 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 0 0 0 4 0 1 55.977 55.977 3 3.0941E-11 16607 TMT1-3 128.46 91.517 442.06 474.65 501.95 381.51 440.66 547.08 417 482 508 384 456 525 2 2 2 2 2 2 109150 4929 1464 4889 7888 10317;10318 10317 2 ESEVLIGNLGDK Unmodified 1272.6561 0.65614609 2359 Q96A65 EXOC4 Exocyst complex component 4 yes yes 0 0 0 0 0 4 0 2 58.594 58.594 2;3 9.5207E-05 17683 TMT1-3 83.617 32.708 53.836 72.577 87.652 41.659 64.272 52.532 51 73 87 44 65 51 1 1 1 1 1 1 10500 4930 2359 4890 7889;7890 10319;10320 10320 2 ESFDGSVR Unmodified 895.40356 0.40356022 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 2 0 1 35.691 35.691 2 0.030822 9221 TMT1-1 81.191 71.797 37.954 58.082 64.067 58.075 79.772 36.1 36 58 65 58 80 36 1 1 1 1 1 1 9941.7 4931 786 4891 7891 10321 10321 1 ESFVDQVR Unmodified 978.47706 0.47705951 2647 Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 WNK1 Serine/threonine-protein kinase WNK1 yes no 0 0 0 0 0 3 0 1 43.309 43.309 2 0.00143 12619 TMT1-2 88.37 33.758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4932 2647 4892 7892 10322 10322 1 ESGAAEQVDNK Unmodified 1146.5153 0.51529551 2830 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 0 2 0 1 33.452 33.452 3 0.007303 8365 TMT1-1 45.257 23.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4933 2830 4893 7893 10323 10323 1 ESGCSFVLALMQK Unmodified 1468.7054 0.70542124 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 9 0 1 74.916 74.916 3 0.0035496 21603 TMT1-8 58.098 28.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4934 536 4894 7894 10324 10324 1 ESGEGQGGYAK Unmodified 1081.4676 0.46761704 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 2.5 0.5 1 1 31.658 31.658 3 0.0010358 7865 TMT1-2 86.344 49.92 169.98 132.48 172.68 152.17 253.34 155.87 160 138 174 153 254 153 2 2 2 2 2 2 22884 4935 1702 4895 7895;7896 10325;10326 10326 2 ESHPGLFPPTFGAVAPFLADLDTTDGLGK Unmodified 2969.4811 0.48108884 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 7 0 2 88.776 88.776 4 7.6942E-06 28604 TMT1-6 57.351 44.422 184.65 170.4 200.38 182.05 204.07 210.57 174 175 203 181 210 203 6 6 6 6 6 6 11258 4936 704 4896 7897;7898 10327;10328;10329;10330;10331;10332 10331 6 ESIDHEKK Unmodified 984.48762 0.4876242 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 1 4 0 1 28.307 28.307 4 0.01208 5718 TMT1-3 68.735 49.492 84.59 132.04 98.129 87.236 106.67 97.16 80 131 102 87 109 94 1 1 1 1 1 1 3156.5 4937 1256 4897 7899 10333 10333 1 ESIDLVLDR Unmodified 1058.5608 0.56078914 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 0 2.5 0.5 1 1 58.361 58.361 2 2.0976E-13 18462 TMT1-2 181.41 96.195 738.97 725.06 1064.3 722.03 544.77 958.78 698 745 1057 728 584 914 4 4 4 4 4 4 197250 4938 2783 4898 7900;7901 10334;10335;10336;10337 10336 4 ESIESEIR Unmodified 961.47164 0.47163978 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2 0 1 40.501 40.501 2 0.0052468 11207 TMT1-1 119.29 52.297 377.04 418.81 476.78 324.75 341.72 458.22 356 425 479 329 356 439 2 2 2 2 2 2 55992 4939 1311 4899 7902 10338;10339 10339 2 ESIESEIRR Unmodified 1117.5728 0.57275081 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 2.5 0.5 1 1 35.164 35.164 3 0.00020791 9056 TMT1-1 131.5 75.49 292.89 362.47 239.72 266.82 279.39 340.61 276 363 254 262 290 327 3 3 3 3 3 3 68951 4940 1311 4900 7903;7904 10340;10341;10342 10340 3 ESISVSSEQLAQFR Unmodified 1579.7842 0.78420015 405 P00915 CA1 Carbonic anhydrase 1 yes yes 0 0 0 0 0 5 0 1 56.222 56.222 2 6.3956E-18 16465 TMT1-4 154.94 120.69 30.741 43.234 26.623 45.028 20.414 15.407 29 43 29 43 22 15 1 1 1 1 1 1 8968.2 4941 405 4901 7905 10343 10343 1 ESIVDVEGVVR Unmodified 1200.635 0.63501672 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 2.5 0.5 1 1 56.2 56.2 2 1.7639E-06 17661 TMT1-2 104.52 49.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4942 714 4902 7906;7907 10344;10345 10345 2 ESKEETPGTEWEK Unmodified 1548.6944 0.69438209 597 P09497-2;P09497 CLTB Clathrin light chain B yes no 0 0 0 0 1 4 0 1 42.076 42.076 3 0.0027993 11135 TMT1-3 72.523 49.385 390.22 437.3 590.08 378.33 388.45 640.24 369 445 587 385 409 611 1 1 1 1 1 1 25111 4943 597 4903 7908 10346 10346 1 ESKETAPGGTESQSLR Unmodified 1675.8013 0.80130678 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 1 3 0 1 31.809 31.809 3 0.030689 8085 TMT1-2 47.222 28.764 38.365 27.925 20.608 29.801 35.501 53.353 36 29 22 29 37 51 1 1 1 1 1 1 4504.2 4944 2172 4904 7909 10347 10347 1 ESKKEDLVFIFWAPESAPLK Unmodified 2333.2307 0.2307348 865 P23528;Q9Y281-3;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 2 9 0 2 73.899 73.899 4;5 3.211E-15 21156 TMT1-8 108.18 82.575 407.77 416.51 362.59 264.62 355.7 558.03 384 423 371 268 370 533 3 3 3 3 3 3 80512 4945 865 4905 7910;7911 10348;10349;10350 10348 3 ESKPLTAQQTTK Unmodified 1330.7092 0.70924429 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 1 6 0 1 34.687 34.687 3 1.1167E-06 8075 TMT1-5 99.566 42.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4946 442 4906 7912 10351 10351 1 ESLDDLTNLVVK Unmodified 1344.7137 0.71366097 710 P14735 IDE Insulin-degrading enzyme yes yes 0 0 0 0 0 5 0 1 72.655 72.655 3 0.00090444 22859 TMT1-4 78.548 59.952 38.105 43.392 51.146 27.841 42.92 53.141 36 44 51 29 44 51 1 1 1 1 1 1 4315.4 4947 710 4907 7913 10352 10352 1 ESLDVYELDAK Unmodified 1280.6136 0.61361257 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 2.67 0.471 1 2 60.365 60.365 2;3 7.5876E-09 19280 TMT1-2 164.43 121.83 145.74 249.97 179.82 200.84 141.96 227.27 138 247 189 196 152 217 3 3 3 3 3 3 47192 4948 1714 4908 7914;7915;7916 10353;10354;10355 10355 3 ESLEALLQR Unmodified 1057.5768 0.57677356 331 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 0 5 0 1 60.62 60.62 2 0.0028111 18158 TMT1-4 74.173 22.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4949 331 4909 7917 10356 10356 1 ESLELEDPSSGLGVTK Unmodified 1659.8203 0.82031088 468 P04233-2 CD74 HLA class II histocompatibility antigen gamma chain yes yes 0 0 0 0 0 4 0 1 61.204 61.204 3 0.0034504 18715 TMT1-3 56.817 32.525 123.04 120.28 137.37 92.19 125.74 205.35 116 123 138 94 131 196 1 1 1 1 1 1 11866 4950 468 4910 7918 10357 10357 1 ESLGLNGDFSVLNTLLNFTDNFDDFRR Unmodified 3118.4996 0.49959245 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 1 7 0 1 82.84 82.84 4 0.047344 26401 TMT1-6 24.096 21.813 38.065 82.136 24.935 29.701 27.129 53.592 36 80 29 29 29 51 1 1 1 1 1 1 3382.5 4951 1999 4911 7919 10358 10358 1 ESLHEVSK Unmodified 927.46616 0.46616048 184 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 0 4 0 1 32.434 32.434 3 0.023737 7322 TMT1-3 60.118 23.723 77.498 71.12 79.358 57.111 82.602 168.2 73 73 80 58 87 160 1 1 1 1 1 1 6362.6 4952 184 4912 7920 10359 10359 1 ESLKELSLAGNELGDEGAR Unmodified 1986.9858 0.98581308 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 1 4 0 1 57.803 57.803 3 5.0049E-23 17346 TMT1-3 131.98 124.17 84.865 101.5 77.817 49.943 61.766 114.43 80 102 80 51 65 109 1 1 1 1 1 1 12246 4953 681 4913 7921 10360 10360 1 ESLLDLSK Unmodified 903.49131 0.49131259 3090 yes yes 0 0 0 0 0 5.5 0.5 1 1 58.547 58.547 2 0.004794 17499 TMT1-5 122.52 0 238.04 372.32 253.94 280.64 313.6 331.11 225 369 268 276 323 319 2 2 2 2 2 2 40979 + 4954 3090 4914 7922;7923 10361;10362 10362 2 ESLLPVAK Unmodified 855.50657 0.50656873 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6.5 0.5 1 1 54.062 54.062 2 0.0045747 15704 TMT1-5 124.08 77.012 322.6 428.73 420.82 286.48 345.91 448.51 305 430 426 291 358 430 2 2 2 2 2 2 54889 4955 1910 4915 7924;7925 10363;10364 10363 2 ESLNASIVDAINQAADCWGIR Unmodified 2302.1012 0.10119397 2890 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 0 0 0 8 0 1 90.435 90.435 3 3.9755E-25 29199 TMT1-7 117.48 96.277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4956 2890 4916 7926 10365 10365 1 ESLQQMAEVTR Unmodified 1290.6238 0.6238001 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 4 0 1 48.896 48.896 2 6.4688E-12 13836 TMT1-3 175.74 123.79 145.85 234.07 176.02 137.58 146.69 204.75 138 232 182 138 153 196 2 2 2 2 2 2 38947 4957 700 4917 7927 10366;10367 10366 2 ESLRGECEDMLSK Unmodified 1552.6861 0.68614236 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 3 1 1 1 45.233 45.233 3 1.4336E-10 12192 TMT1-3 130.2 107.97 360.92 429.38 291.41 271.57 386.06 426.04 340 431 306 271 395 410 2 2 2 2 2 2 60010 4958 1684 4918 7928;7929 10368;10369 10369 2 ESLSAATAQAAER Unmodified 1303.6368 0.63680763 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 3 0 1 39.652 39.652 2 1.7987E-12 11170 TMT1-2 156.36 92.098 23.164 36.011 43.73 35.931 43.098 37.146 22 36 44 36 44 36 1 1 1 1 1 1 5930.4 4959 2064 4919 7930 10370 10370 1 ESLSEVEEK Unmodified 1048.4924 0.49243481 3041 Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 0 2 0 1 45.02 45.02 2 1.1953E-05 12962 TMT1-1 156.35 62.918 177.45 170.69 148.2 115.2 146.67 204.75 167 174 152 116 152 196 1 1 1 1 1 1 15532 4960 3041 4920 7931 10371 10371 1 ESLSPGK Unmodified 716.37047 0.37046918 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2 NEXN Nexilin yes no 0 0 0 0 0 5 0 1 35.979 35.979 2 0.0011935 8449 TMT1-4 94.662 42.927 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4961 1635 4921 7932 10372 10372 1 ESLSQPGDFVLSVLSDQPK Unmodified 2045.0317 0.031700644 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6.33 0.471 2 1 82.562 82.562 3;4 1.1459E-13 26877 TMT1-5 113.86 102.58 346.76 480.63 464.67 444.04 662.55 581.25 328 481 476 443 672 563 4 4 4 4 4 4 88353 4962 936 4922 7933;7934;7935 10373;10374;10375;10376 10373 4 ESLVLPIYEGIPVLNCWGALPLGGK Unmodified 2694.4455 0.44549538 2793 Q9NZ32 ACTR10 Actin-related protein 10 yes yes 0 0 0 0 0 9 0 1 97.62 97.62 4 0.006601 30066 TMT1-8 37.896 22.642 15.861 30.628 13.294 22.855 21.177 22.848 15 30 15 22 22 22 1 1 1 1 1 1 2504.7 4963 2793 4923 7936 10377 10377 1 ESLWPFLIDK Unmodified 1246.6598 0.6597749 2799 Q9NZL9-4;Q9NZL9-2;Q9NZL9 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 0 8 0 1 80.82 80.82 2 0.00061373 25689 TMT1-7 82.261 32.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4964 2799 4924 7937 10378 10378 1 ESNCYDPER Unmodified 1168.4455 0.44550139 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 2 0 1 30.136 30.136 2 0.014054 6999 TMT1-1 83.358 69.151 69.128 63.667 49.782 27.652 57.331 60.192 65 65 51 29 58 58 1 1 1 1 1 1 11203 4965 1540 4925 7938 10379 10379 1 ESNEEEQVWHFLGK Unmodified 1730.79 0.79001381 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 5 0 1 66.022 66.022 3 0.0080372 20244 TMT1-4 54.501 43.221 61.411 79.798 70.644 72.841 145.54 81.127 58 80 73 73 145 80 1 1 1 1 1 1 9600.7 4966 2633 4926 7939 10380 10380 1 ESNGPVK Unmodified 729.36572 0.36571815 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 0 4 0 1 29.35 29.35 2 0.015228 6123 TMT1-3 101.33 49.639 147.12 81.112 91.869 94.966 122.29 58.338 138 87 94 94 123 58 1 1 1 1 1 1 5201.3 4967 392 4927 7940 10381 10381 1 ESNTVFSFLGLKPR Unmodified 1593.8515 0.85149185 2885 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 0 1 9 0 1 68.378 68.378 3 4.0638E-24 18996 TMT1-8 178.67 149.33 496.99 623.85 520.7 433.69 280.21 732.87 469 626 536 430 311 695 2 2 2 2 2 2 103880 4968 2885 4928 7941 10382;10383 10382 2 ESNVLHEK Unmodified 954.47706 0.47705951 2774 Q9NX62 IMPAD1 Inositol monophosphatase 3 yes yes 0 0 0 0 0 4 0 1 32.031 32.031 3 0.030504 7140 TMT1-3 54.982 34.461 108.31 107 100.19 72.109 90.854 121.06 102 109 102 73 94 116 1 1 1 1 1 1 7112.8 4969 2774 4929 7942 10384 10384 1 ESNVQEVR Unmodified 959.46722 0.46722311 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 2 0 1 26.892 26.892 2 0.0044815 5770 TMT1-1 124.74 66.549 46.741 42.949 42.809 44.595 50.285 29.479 44 44 44 44 51 29 1 1 1 1 1 1 6282.4 4970 1482 4930 7943 10385 10385 1 ESPESEGPIYEGLIL Unmodified 1631.793 0.7930335 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 3 0 1 82.493 82.493 2 0.012974 27826 TMT1-2 63.184 48.518 7.511 15.582 22.588 13.956 0 15.99 7 15 22 14 0 15 1 1 1 2 0 1 3515.1 4971 2444 4931 7944 10386;10387 10387 2 ESPEVLLTLDILK Unmodified 1468.8389 0.83886148 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 83.678 83.678 3 0.00020578 27381 TMT1-5 67.997 50.188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4972 1763 4932 7945 10388 10388 1 ESPLLFK Unmodified 832.46945 0.46945494 894 P26038 MSN Moesin yes yes 0 0 0 0 0 6.5 0.5 1 1 57.404 57.404 2 0.0050401 16508 TMT1-6 135.35 39.73 1373 2019.4 1788.4 1475.3 1900.9 2127.9 1299 2013 1832 1480 1952 2047 3 3 3 3 3 3 342990 4973 894 4933 7946;7947 10389;10390;10391 10391 3 ESPQDSAITR Unmodified 1102.5255 0.52546627 3004 Q9Y3P9;Q9Y3P9-2 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 2 0 1 31.092 31.092 2 0.0007545 7467 TMT1-1 107.79 56.722 15.741 45.404 21.001 0 37.128 45.845 15 44 22 0 37 44 1 1 1 0 1 1 2206.1 4974 3004 4934 7948 10392 10392 1 ESPVSAGNDAYVDLDR Unmodified 1706.7748 0.77475768 2118 Q86VS8 HOOK3 Protein Hook homolog 3 yes yes 0 0 0 0 0 2 0 1 51.814 51.814 3 5.591E-07 15633 TMT1-1 81.346 69.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4975 2118 4935 7949 10393 10393 1 ESQDTSFTTLVER Unmodified 1511.7104 0.71036651 1602 Q06210-2;Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 0 3 0 1 53.163 53.163 3 0.032941 16484 TMT1-2 45.722 26.451 30.776 35.777 27.035 45.827 34.78 22.46 29 36 29 44 36 22 1 1 1 1 1 1 3134.8 4976 1602 4936 7950 10394 10394 1 ESQETLHK Unmodified 970.47197 0.47197413 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 2.5 0.5 1 1 29.767 29.767 3 0.001627 7186 TMT1-2 101.9 32.269 175.92 369.35 236.66 217.95 330.91 215.48 167 362 249 218 333 211 2 2 2 2 2 2 19721 4977 817 4937 7951;7952 10395;10396 10396 2 ESQILSLLSDIGSGIR Unmodified 1686.9152 0.91521432 125 O15111 CHUK Inhibitor of nuclear factor kappa-B kinase subunit alpha yes yes 0 0 0 0 0 8 0 1 88.052 88.052 3 0.00041969 28378 TMT1-7 72.446 51.606 23.431 29.198 4.6632 23.365 21.411 15.379 22 29 7 22 22 15 1 1 1 1 1 1 1887.2 4978 125 4938 7953 10397 10397 1 ESQPLLGTVIDGMLLLK Unmodified 1826.0223 0.022321932 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 8 0 2 94.306 94.306 3;4 2.0858E-08 30615 TMT1-7 103.5 83.922 46.233 80.391 96.369 57.234 80.256 91.518 44 80 95 59 81 88 3 3 2 3 2 3 9261 4979 853 4939 7954;7955 10398;10399;10400 10398 3 ESQSPDTTIQR Unmodified 1260.5946 0.59460847 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 2 0 1 30.273 30.273 2 6.5056E-05 7078 TMT1-1 115 81.78 23.495 14.265 6.5996 0 45.519 14.691 22 15 7 0 44 15 1 1 1 0 1 1 3772.1 4980 2336 4940 7956 10401 10401 1 ESQSYLVEDLER Unmodified 1466.6889 0.68890278 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 2 0 2 54.799 54.799 2;3 4.9125E-10 16809 TMT1-1 156.69 114.34 84.564 108.22 122.72 77.403 144.76 128.05 80 109 123 80 146 124 2 2 2 2 2 2 36079 4981 2914 4941 7957;7958 10402;10403 10402 2 ESQSYLVEDLERS Unmodified 1553.7209 0.72093119 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 1 2 0 1 56.646 56.646 2 3.9252E-05 17540 TMT1-1 85.271 39.299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4982 2914 4942 7959 10404 10404 1 ESQVQELVELIEK Unmodified 1542.8141 0.8141033 2233 Q8NHV1 GIMAP7 GTPase IMAP family member 7 yes yes 0 0 0 0 0 4 0 1 82.343 82.343 3 2.5202E-07 26904 TMT1-3 116.63 82.95 61.711 65.522 32.342 53.158 34.94 38.445 58 66 36 51 37 37 2 2 2 2 2 2 7164 4983 2233 4943 7960 10405;10406 10405 2 ESSIIGVTLFSSTK Unmodified 1467.7821 0.78207489 1620 Q08257;Q08257-3;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 8 0 1 70.283 70.283 3 1.5653E-08 21597 TMT1-7 95.428 69.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4984 1620 4944 7961 10407 10407 1 ESSSHHPGIAEFPSR Unmodified 1636.7594 0.75938238 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 4.57 1.18 2 1 2 2 31.45 31.45 3;4 6.1412E-11 6933 TMT1-3 124.16 97.536 718.09 868.29 663.73 584.72 629.98 1006.4 677 872 689 582 661 961 8 8 8 8 8 8 262180 4985 437 4945 7962;7963;7964;7965;7966;7967;7968 10408;10409;10410;10411;10412;10413;10414;10415 10411 8 ESTITLQQAEYEFLSFVR Unmodified 2160.0739 0.07389981 2992 Q9Y3B8-2;Q9Y3B8-3;Q9Y3B8 REXO2 Oligoribonuclease, mitochondrial yes no 0 0 0 0 0 6 0 1 91.553 91.553 3 1.0878E-07 30287 TMT1-5 92.264 89.382 39.491 28.001 11.522 39.218 28.508 31.167 37 29 14 37 30 30 2 2 2 2 2 2 4310.4 4986 2992 4946 7969 10416;10417 10417 2 ESTLEAIGYICQDIDPEQLQDK Unmodified 2564.1952 0.19521351 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 4 0 1 78.192 78.192 4 4.3354E-09 25287 TMT1-3 82.36 68.198 61.206 102.97 85.462 49.064 84.291 129.78 58 102 87 51 87 124 2 2 2 2 2 2 19998 4987 1803 4947 7970 10418;10419 10418 2 ESTLHLVLR Unmodified 1066.6135 0.61349341 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 0 7.5 1.12 1 1 1 1 45.482 45.482 2;3 1.8893E-06 11743 TMT1-7 130.31 93.29 1011.4 1986.4 1269.3 996.8 1731.7 1482.4 959 1951 1329 1011 1748 1437 3 3 3 3 3 3 250690 4988 1463 4948 7971;7972;7973;7974 10420;10421;10422;10423 10422 4 ESTLTCTEILTK Unmodified 1394.6963 0.69629635 2047 Q6UWL2-3;Q6UWL2;Q6UWL2-2 SUSD1 Sushi domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 55.691 55.691 2 4.2022E-08 16258 TMT1-4 132.32 89.987 38.084 58.443 41.92 44.668 49.219 60.424 36 58 44 44 51 58 1 1 1 1 1 1 7157.7 4989 2047 4949 7975 10424 10424 1 ESTNYPGDYTLCVSCDGK Unmodified 2064.8405 0.84047075 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 4 0 1 55.24 55.24 3 2.291E-14 16334 TMT1-3 123.55 99.015 84.91 85.44 83.912 104.79 90.157 97.631 80 87 87 102 94 94 1 1 1 1 1 1 22495 4990 1083 4950 7976 10425 10425 1 ESTSYIEEHIDR Unmodified 1477.6685 0.66850169 2623 Q9H267;Q9H267-2 VPS33B Vacuolar protein sorting-associated protein 33B yes no 0 0 0 0 0 2 0 1 41.61 41.61 3 6.0864E-05 11599 TMT1-1 101.39 78.509 46.706 50.407 42.347 44.933 33.758 53.403 44 51 44 44 36 51 1 1 1 1 1 1 5421.8 4991 2623 4951 7977 10426 10426 1 ESTYQGHHTPPVQK Unmodified 1607.7692 0.76921879 391 P00414 MT-CO3 Cytochrome c oxidase subunit 3 yes yes 0 0 0 0 0 5.5 0.5 1 1 28.898 28.898 4 0.00086566 5685 TMT1-4 70.806 49.949 68.716 102.45 86.138 58.026 70.577 90.728 65 102 88 59 73 87 2 2 2 2 2 2 4993.5 4992 391 4952 7978;7979 10427;10428 10427 2 ESVDGQWVCISDVNK Unmodified 1734.7883 0.78829925 1322 P55735-2;P55735;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 0 4 0 1 60.359 60.359 3 0.0060854 18352 TMT1-3 54.281 22.1 45.938 165.91 73.455 65.524 60.793 121.92 44 160 80 65 65 116 1 1 1 1 1 1 12722 4993 1322 4953 7980 10429 10429 1 ESVENLAK Unmodified 888.45526 0.45526144 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 4 0 1 42.764 42.764 2 0.0067695 11417 TMT1-3 70.919 16.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4994 704 4954 7981 10430 10430 1 ESVEQQADSFK Unmodified 1266.5728 0.57281039 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 2.5 0.5 1 1 46.768 46.768 2;3 1.3439E-07 13927 TMT1-2 115.29 58.239 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4995 220 4955 7982;7983 10431;10432 10432 2 ESVFTVEGGHR Unmodified 1216.5836 0.58364985 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 5 1 1 1 37.696 37.696 3 4.169E-07 9379 TMT1-3 133.89 105.17 160.69 193.68 241 140.23 206.78 217.96 152 196 240 145 211 210 2 2 2 2 2 2 30023 4996 2479 4956 7984;7985 10433;10434 10433 2 ESVGGSPQTK Unmodified 988.48254 0.48253882 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 4 0 1 31.387 31.387 2 0.00025763 6897 TMT1-3 126.39 85.505 92.71 70.621 47.822 59.616 49.338 36.968 87 73 51 58 51 36 1 1 1 1 1 1 6378.8 4997 1623 4957 7986 10435 10435 1 ESVLPEDAILPLMK Unmodified 1553.8375 0.83748127 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5 0 1 78.271 78.271 3 0.00015473 25073 TMT1-4 81.565 62.507 30.403 66.041 63.954 50.746 63.048 76.019 29 65 65 51 65 73 1 1 1 1 1 1 15359 4998 2066 4958 7987 10436 10436 1 ESVLQFYPK Unmodified 1109.5757 0.57571092 2847 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 yes yes 0 0 0 0 0 7 0 1 60.632 60.632 2 0.023895 17872 TMT1-6 76.465 27.097 91.811 145.83 135.27 108.55 134.44 143.27 87 145 138 109 138 138 1 1 1 1 1 1 64151 4999 2847 4959 7988 10437 10437 1 ESVNYLVSQQNMLLIPTSFSPLK Unmodified 2607.3618 0.36182533 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 0 9 0 1 85.992 85.992 4 3.0453E-11 25908 TMT1-8 83.245 62.045 69.687 85.909 117.22 62.602 77.439 97.994 66 87 116 65 80 94 2 2 2 2 2 2 10232 5000 2855 4960 7989 10438;10439 10438 2 ESWLLPGSNDLLLEVGPR Unmodified 1994.0473 0.047291129 124 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 0 6 0 1 82.743 82.743 3 8.4686E-06 27023 TMT1-5 79.511 54.814 15.777 29.315 28.562 21.949 20.963 30.316 15 29 29 22 22 29 1 1 1 1 1 1 6102.3 5001 124 4961 7990 10440 10440 1 ESWLTGK Unmodified 819.41267 0.41266834 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7 0 1 52.268 52.268 2 0.0094265 14455 TMT1-6 112.37 25.086 162.74 245.08 213.32 230.65 252.12 208.14 154 244 221 227 258 202 1 1 1 1 1 1 46899 5002 1723 4962 7991 10441 10441 1 ESYDYLK Unmodified 916.41781 0.4178133 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 4 0 1 47.62 47.62 2 0.011901 13333 TMT1-3 103.92 72.546 376.32 667.39 566.84 543.09 477.39 693.14 357 660 585 536 503 663 2 2 2 2 2 2 38850 5003 2841 4963 7992 10442;10443 10443 2 ESYMATFYEFFNEQK Unmodified 1932.824 0.82401605 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 7.5 0.5 1 1 84.402 84.402 3 7.7939E-15 27024 TMT1-6 130.61 103.58 46.507 73.597 56.18 43.241 79.905 52.086 44 73 58 44 80 51 1 1 1 1 1 1 9200.2 5004 1786 4964 7993;7994 10444;10445 10444 2 ESYPVFYLFR Unmodified 1319.655 0.65502388 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 7.5 0.5 1 1 75.654 75.654 2 1.111E-28 23708 TMT1-7 208.37 150.51 330.98 364.79 329.25 289.86 397.96 359.61 312 369 338 290 405 348 3 3 3 3 3 3 42179 5005 944 4965 7995;7996 10446;10447;10448 10447 3 ESYSIYVYK Unmodified 1150.5546 0.55464113 524;2168 Q16778;P06899;P33778;P23527;Q6DRA6;Q6DN03;Q8N257 HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B no no 0 0 0 0 0 6.12 2.32 1 1 3 2 1 55.718 55.718 2;3 1.2042E-13 16209 TMT1-5 186.13 130.12 7202.3 11621 6680.4 8961 9714.3 11066 6804 11483 7221 8730 10044 10641 9 9 9 9 9 9 1409900 5006 524;2168 4966 7997;7998;7999;8000;8001;8002;8003;8004 10449;10450;10451;10452;10453;10454;10455;10456;10457;10458;10459;10460 10452 12 ESYSVYVYK Unmodified 1136.539 0.53899107 239;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 0 0 4.86 2.59 2 1 2 1 1 52.745 52.745 2;3 7.3187E-20 14956 TMT1-4 194.2 142.85 13416 21734 13407 15169 19629 20489 12680 21488 14283 14947 20105 19746 11 11 11 11 11 11 2693000 5007 239;2498 4967 8005;8006;8007;8008;8009;8010;8011 10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473 10463 13 ESYVETELIFALAK Unmodified 1611.8396 0.83958976 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5.5 0.5 1 1 83.635 83.635 3 2.0093E-10 27382 TMT1-5 122.45 90.385 336.09 490.2 444.93 316.72 404.85 427.64 318 489 453 321 415 412 6 6 6 6 6 6 50949 5008 1540 4968 8012;8013 10474;10475;10476;10477;10478;10479 10477 6 ETAATFLK Unmodified 879.47018 0.47018322 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 6 0 1 50.287 50.287 2 0.038805 14281 TMT1-5 77.732 29.883 176.08 308.27 261.91 146.43 218.05 277.33 167 305 266 152 224 266 1 1 1 1 1 1 30764 5009 2238 4969 8014 10480 10480 1 ETAAVIFLHGLGDTGHSWADALSTIR Unmodified 2737.3824 0.38237785 351 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 0 8 0 1 78.844 78.844 4 7.0411E-06 24880 TMT1-7 63.63 53.305 70.132 79.593 47.763 51.411 78.98 68.102 66 80 51 51 80 66 2 2 2 2 2 2 23495 5010 351 4970 8015 10481;10482 10481 2 ETADAITK Unmodified 847.42871 0.42871234 1543 Q00765 REEP5 Receptor expression-enhancing protein 5 yes yes 0 0 0 0 0 4 0 1 38.25 38.25 3 0.0063486 9607 TMT1-3 79.809 26.13 130.56 151.09 109.81 134.27 126.19 136.05 123 152 116 131 131 131 1 1 1 1 1 1 6604.9 5011 1543 4971 8016 10483 10483 1 ETADTDTADQVMASFK Oxidation (M) 1744.7462 0.74615966 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 0 3 0.816 1 1 1 51.661 51.661 3 2.0017E-06 15896 TMT1-2 99.069 88.282 190.77 361.36 272.88 239.81 273.88 323.71 181 356 283 239 283 311 3 3 3 3 3 3 50703 5012 672 4972 8017;8018;8019 10484;10485;10486 10485 123 3 ETADTDTADQVMASFK Unmodified 1728.7512 0.75124504 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.75 1.09 1 2 1 64.178 64.178 3;4 1.2931E-15 19512 TMT1-4 118.21 97.261 970.07 1352.1 1004.8 920.37 1054.9 1493.2 916 1348 1046 915 1098 1429 4 4 4 4 4 4 342540 5013 672 4972 8020;8021;8022;8023 10487;10488;10489;10490;10491 10491 5 ETAEADVASLNR Unmodified 1274.6103 0.61025853 592;594 P09493-2;P09493-5 no no 0 0 0 0 0 2.33 0.471 2 1 41.996 41.996 2;3 1.7567E-44 11847 TMT1-1 228.84 165.31 316.45 315.39 288.12 309.77 341.29 307.93 298 321 298 305 350 298 3 3 3 3 3 3 244260 5014 592;594 4973 8024;8025;8026 10492;10493;10494 10493 3 ETAEADVASLNRR Unmodified 1430.7114 0.71136956 592;594 P09493-2;P09493-5 no no 0 0 0 0 1 2.5 0.5 1 1 36.697 36.697 3 8.1145E-12 9683 TMT1-1 151.52 113.93 316.15 367.43 295.06 253.98 263.91 412.47 298 370 305 253 277 394 3 3 3 3 3 3 56648 5015 592;594 4974 8027;8028 10495;10496;10497 10495 3 ETAEAYLGK Unmodified 980.48148 0.48147619 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4 0 2 48.102 48.102 2;3 0.00060123 13601 TMT1-3 133.23 67.982 310.09 436.04 352.17 313.18 596.62 361.41 293 435 364 316 596 355 2 2 2 2 2 2 113390 5016 640 4975 8029;8030 10498;10499 10498 2 ETAELSETLTR Unmodified 1248.6198 0.61976058 2022 Q6NYC8;Q6NYC8-2 PPP1R18 Phostensin yes no 0 0 0 0 0 2 0 1 46.979 46.979 2 9.5422E-06 13713 TMT1-1 125.74 55.925 38.098 74.673 25.751 21.423 57.874 52.715 36 73 29 22 58 51 1 1 1 1 1 1 7769.6 5017 2022 4976 8031 10500 10500 1 ETAENYLGHTAK Unmodified 1332.631 0.63099397 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 39.104 39.104 3 1.5655E-05 9981 TMT1-3 106.13 70.589 245.45 310.01 323.37 238.15 260.3 356.08 232 312 327 240 271 341 2 2 2 2 2 2 21336 5018 1058 4977 8032 10501;10502 10501 2 ETAIELGYLTAEQFDEWVKPK Unmodified 2466.2319 0.23185701 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 1 6 0 1 85.786 85.786 4 3.4282E-10 28155 TMT1-5 94.358 66.18 57.207 95.445 42.701 47.989 44.475 72.285 54 94 47 47 47 69 1 1 1 1 1 1 18939 5019 553 4978 8033 10503 10503 1 ETALLIDPK Unmodified 998.56481 0.56481189 1324 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 5 0 1 56.941 56.941 2 2.8937E-05 16710 TMT1-4 124.74 64.225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5020 1324 4979 8034 10504 10504 1 ETCLITFLLAGIECPR Unmodified 1891.9536 0.95359044 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 94.033 94.033 3 9.2131E-09 30589 TMT1-7 110.38 88.552 62.638 65.042 57.335 51.289 55.144 92.234 59 66 59 51 58 88 3 3 3 3 3 3 13252 5021 2071 4980 8035;8036 10505;10506;10507 10505 3 ETDAFQPHK Unmodified 1071.4985 0.49852324 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 4 0 1 36.931 36.931 3 0.00035989 9069 TMT1-3 111.65 95.762 394.76 398.66 401.28 247.44 333.35 561.86 372 406 405 254 348 536 2 2 2 2 2 2 31735 5022 704 4981 8037 10508;10509 10508 2 ETDDLEQWISEK Unmodified 1491.6729 0.67291837 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 3.5 0.5 1 1 69.963 69.963 3 0.025208 23198 TMT1-2 50.145 21.169 116.68 122.01 123.11 70.68 94.196 122.03 110 124 124 73 95 117 3 3 3 3 2 3 14420 5023 651 4982 8038;8039 10510;10511;10512 10511 3 ETDIEDSDDIPEDTTYKK Unmodified 2112.9223 0.92226935 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 2 0 1 50.611 50.611 4 0.0010904 15115 TMT1-1 57.499 45.976 129.85 243.01 151.37 146.26 170.13 180.63 123 239 160 145 175 174 2 2 2 2 2 2 14387 5024 666 4983 8040 10513;10514 10513 2 ETDKYIK Unmodified 895.4651 0.46509784 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 1 5 0 1 37.938 37.938 3 0.040578 9227 TMT1-4 65.246 29.891 528.22 803.53 530.17 558.4 709.05 749.42 499 797 560 552 727 722 1 1 1 1 1 1 21510 5025 147 4984 8041 10515 10515 1 ETDLLILFK Unmodified 1090.6274 0.62741214 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 7 0 1 79.632 79.632 2 0.01688 25129 TMT1-6 79.474 24.091 30.341 58.312 81.023 42.335 49.326 60.42 29 58 80 44 51 58 1 1 1 1 1 1 3733.1 5026 498 4985 8042 10516 10516 1 ETDLLLDDSLVSIFGNR Unmodified 1905.9684 0.96837211 947 P30044-2;P30044;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 5.33 0.471 2 1 89.009 89.009 2;3 4.8937E-62 29293 TMT1-4 220.52 189.52 97.306 157.69 103.41 102.7 139.67 120.74 92 156 109 102 142 117 4 4 4 4 4 4 98096 5027 947 4986 8043;8044;8045 10517;10518;10519;10520 10518 4 ETDLLLDDSLVSIFGNRR Unmodified 2062.0695 0.069483134 947 P30044-2;P30044;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 1 6 0 1 78.89 78.89 3 5.115E-11 25485 TMT1-5 116.06 88.412 61.475 56.23 79.97 65.253 54.539 91.186 58 58 80 65 58 87 1 1 1 1 1 1 28079 5028 947 4987 8046 10521 10521 1 ETDNAAIIMK Unmodified 1104.5485 0.5485099 215 O60234 GMFG Glia maturation factor gamma yes yes 0 0 0 0 0 4 0 1 50.16 50.16 2 0.00021783 14305 TMT1-3 128.35 78.93 185.98 370.88 168.08 175.53 246.53 353.27 176 363 184 174 255 338 1 1 1 1 1 1 38013 5029 215 4988 8047 10522 10522 1 ETDQMLQVLQESLGELDK Unmodified 2075.0093 0.0092506424 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 6 0 1 90.83 90.83 3 2.4467E-05 29951 TMT1-5 59.372 39.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5030 1138 4989 8048 10523 10523 1 ETEGDVTSVK Unmodified 1063.5033 0.50333384 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 2.5 0.5 1 1 39.206 39.206 2 1.2738E-08 10857 TMT1-2 136.63 44.195 108.23 106.77 114.37 94.063 99.027 97.378 102 109 116 94 102 94 1 1 1 1 1 1 12812 5031 1232 4990 8049;8050 10524;10525 10525 2 ETEISLK Unmodified 818.43855 0.43854874 279 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 0 0 4 0 1 46.302 46.302 2 0.0045883 12815 TMT1-3 82.716 24.029 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5032 279 4991 8051 10526 10526 1 ETEKDCLNLDK Unmodified 1363.6289 0.62894506 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 4 0 2 44.478 44.478 3;4 1.3901E-05 12093 TMT1-3 116.24 65.884 746.66 1339.5 873.13 735.56 1012 1010.5 707 1320 915 738 1033 975 2 2 2 2 2 2 82927 5033 570 4992 8052;8053 10527;10528 10528 2 ETELELR Unmodified 888.45526 0.45526144 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 2 0 1 42.303 42.303 2 0.01083 11856 TMT1-1 106.42 14.096 146.3 157.62 164.68 130.65 144.57 245.32 138 160 167 131 152 234 1 1 1 1 1 1 20428 5034 1762 4993 8054 10529 10529 1 ETELVVVDTPGIFDTEVPNAETSK Unmodified 2589.2698 0.26975866 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 4 0 2 75.238 75.238 3;4 6.9822E-07 24131 TMT1-3 73.546 57.45 123.96 167.27 123.39 196.91 122.76 152.13 117 167 132 189 131 146 3 3 3 3 3 3 38068 5035 2753 4994 8055;8056 10530;10531;10532 10530 3 ETENDDLTNVIQK Unmodified 1517.7209 0.72093119 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 3 0 1 54.327 54.327 3 2.7586E-09 16929 TMT1-2 128.54 91.56 61.576 64.067 56.31 51.452 49.713 36.957 58 65 58 51 51 36 1 1 1 1 1 1 10804 5036 352 4995 8057 10533 10533 1 ETENTAYK Unmodified 954.42944 0.42944062 1960 Q5JSH3-2;Q5JSH3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 3 0 1 32.658 32.658 2 0.0056167 8397 TMT1-2 116.37 63.735 100.09 61.1 78.438 88.706 90.897 97.61 94 65 80 87 94 94 1 1 1 1 1 1 7080.6 5037 1960 4996 8058 10534 10534 1 ETETVFVPVIQAGMEALK Unmodified 1961.018 0.017964835 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 6 0 1 85.134 85.134 3 7.7014E-06 27936 TMT1-5 80.638 54.772 23.167 36.018 43.303 21.228 12.604 61.468 22 36 43 22 15 58 1 1 1 1 1 1 3684 5038 1293 4997 8059 10535 10535 1 ETFDVTLEPLSFK Unmodified 1524.7712 0.77117585 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 5.5 0.5 1 1 76.075 76.075 3 7.7533E-11 24438 TMT1-5 130.69 107.96 1039.9 1269 1237.2 809.71 1262.2 1120.6 982 1278 1252 830 1279 1085 6 6 6 6 6 6 272530 5039 393 4998 8060;8061 10536;10537;10538;10539;10540;10541 10540 6 ETFDVTLEPLSFKK Unmodified 1652.8661 0.86613887 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 7 0 1 67.904 67.904 3 1.0054E-10 20547 TMT1-6 127.36 62.242 1045.4 1114.1 994.66 803.18 867.04 1273.6 985 1129 1019 804 906 1218 1 1 1 1 1 1 257190 5040 393 4999 8062 10542 10542 1 ETGALAAAK Unmodified 830.44978 0.44978213 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 38.804 38.804 2 0.00033379 9572 TMT1-4 101.72 39.521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5041 325 5000 8063 10543 10543 1 ETGANLAICQWGFDDEANHLLLQNNLPAVR Unmodified 3378.6415 0.64152244 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 6 0 2 76.395 76.395 3;4 9.2141E-35 24531 TMT1-5 119.85 96.113 61.046 118.72 98.995 88.407 99.8 82.432 58 117 102 88 102 80 3 3 3 3 3 3 30710 5042 1161 5001 8064;8065 10544;10545;10546 10544 3 ETGEHLVHVK Unmodified 1147.5986 0.59857163 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.2 1.72 1 1 2 1 32.595 32.595 3;4 1.4169E-05 7238 TMT1-3 140.17 123.95 15043 18180 16980 12499 16611 19657 14199 18307 17286 12647 17075 18885 8 8 8 8 8 8 1090300 5043 831 5002 8066;8067;8068;8069;8070 10547;10548;10549;10550;10551;10552;10553;10554 10548 8 ETGEHLVHVKK Unmodified 1275.6935 0.69353465 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6 0 1 32.357 32.357 5 0.0027351 7144 TMT1-5 69.979 47.781 161.34 213.84 114.52 110.59 91.304 300.14 152 213 123 109 102 284 1 1 1 1 1 1 11534 5044 831 5003 8071 10555 10555 1 ETGQLVALK Unmodified 957.5495 0.54949617 1538 Q00526 CDK3 Cyclin-dependent kinase 3 yes yes 0 0 0 0 0 6 0 1 47.796 47.796 2 0.00097707 13299 TMT1-5 126.07 0 123.28 129.58 89.427 87.204 135.97 127.24 116 131 94 87 138 123 1 1 1 1 1 1 10368 5045 1538 5004 8072 10556 10556 1 ETGTLESQLEANK Unmodified 1418.6889 0.68890278 430 P02549-2;P02549 SPTA1 Spectrin alpha chain, erythrocytic 1 yes no 0 0 0 0 0 6 0 1 59.231 59.231 3 0.033895 17754 TMT1-5 45.357 14.071 269.1 356.02 276.51 253.77 275.9 429.19 254 356 287 252 289 410 1 1 1 1 1 1 48553 5046 430 5005 8073 10557 10557 1 ETGVDLTK Unmodified 861.44436 0.4443624 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 43.568 43.568 2 0.0042473 11702 TMT1-3 126.41 49.513 498.34 601.88 492.74 410.7 544.89 610.19 470 605 508 412 559 587 1 1 1 1 1 1 72951 5047 1058 5006 8074 10558 10558 1 ETGYTYILPK Unmodified 1183.6125 0.61249036 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 6 0 1 57.129 57.129 2 0.00082999 17066 TMT1-5 105.52 76.047 30.694 51.74 27.163 21.461 51.349 29.449 29 51 29 22 51 29 1 1 1 1 1 1 3522.4 5048 2028 5007 8075 10559 10559 1 ETHADLWPAK Unmodified 1166.572 0.57202253 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 5 0 1 44.683 44.683 3 0.00044494 11980 TMT1-4 99.815 70.072 380.31 275 409.63 325.25 353.82 409.91 358 289 409 326 366 394 1 1 1 1 1 1 57377 5049 1021 5008 8076 10560 10560 1 ETHLNELNIMDPQHR Unmodified 1845.8792 0.87917994 320 O75995 SASH3 SAM and SH3 domain-containing protein 3 yes yes 0 0 0 0 0 4 0 1 44.85 44.85 4 0.0051986 12230 TMT1-3 53.828 48.118 84.883 109.11 68.362 81.921 76.807 90.55 80 109 73 80 80 87 1 1 1 1 1 1 15403 5050 320 5009 8077 10561 10561 1 ETHQQVVSR Unmodified 1082.5469 0.54687041 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 0 2.5 0.5 1 1 19.806 19.806 3 0.00035419 3408 TMT1-2 112.3 77.488 29.7 32.606 30.128 29.366 28.444 31.168 28 33 31 29 29 30 3 3 3 3 2 3 4278 5051 104 5010 8078;8079 10562;10563;10564 10564 3 ETHSIGRD Unmodified 913.42536 0.42535829 2617 Q9H0W9-3;Q9H0W9-2;Q9H0W9;Q9H0W9-4 C11orf54 Ester hydrolase C11orf54 yes no 0 0 0 0 1 2 0 1 19.651 19.651 3 0.016334 3390 TMT1-1 73.985 26.918 7.4216 10.03 6.5271 9.1511 15.782 15.54 7 10 7 9 16 15 1 1 1 1 1 1 1096.1 5052 2617 5011 8080 10565 10565 1 ETHSLFFR Unmodified 1035.5138 0.51377937 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 6.5 0.5 1 1 42.481 42.481 3 0.00071339 11067 TMT1-5 130.22 98.461 167.69 254.37 273.97 192.02 254.37 285.89 159 254 276 195 261 275 2 2 2 2 2 2 31607 5053 1063 5012 8081;8082 10566;10567 10566 2 ETHVMDYR Unmodified 1049.46 0.46002924 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 3 0 1 31.098 31.098 3 0.00035071 7778 TMT1-2 85.676 34.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5054 2907 5013 8083 10568 10568 1 ETIELVHTEPTDVAQLPSR Unmodified 2134.0906 0.090612506 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 3.33 0.471 2 1 55.127 55.127 3;4 5.8136E-52 17329 TMT1-2 192.85 171.43 176.66 271.02 196.39 161.25 160.51 196.89 167 269 204 161 167 189 3 3 3 3 3 3 148320 5055 2013 5014 8084;8085;8086 10569;10570;10571;10572 10571 4 ETIEQEK Unmodified 875.42363 0.42362696 1435;1481 P62328;P63313;CON__P21752 TMSB4X;TMSB10 Thymosin beta-4;Hematopoietic system regulatory peptide;Thymosin beta-10 no no 0 0 0 0 0 2 0.816 1 1 1 35.437 35.437 2 3.402E-08 9180 TMT1-1 176.41 65.603 1155.3 971.7 1943.8 1269.9 1753.4 1915.7 1092 1017 1908 1298 1795 1844 4 4 4 4 4 4 219750 + 5056 1435;1481 5015 8087;8088;8089 10573;10574;10575;10576 10574 4 ETIEQEKR Unmodified 1031.5247 0.52473799 1481 P63313 TMSB10 Thymosin beta-10 yes yes 0 0 0 0 1 3 0 1 29.58 29.58 3 0.0015171 7161 TMT1-2 122.19 72.746 299.38 684.32 500.62 388.16 381.91 604.18 285 670 518 389 402 577 1 1 1 1 1 1 41124 + 5057 1481 5016 8090 10577 10577 1 ETIFELEDQVEQHR Unmodified 1771.8377 0.83769228 1964 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 0 0 2.5 0.5 1 1 61.135 61.135 3 1.0505E-10 19610 TMT1-2 125.84 118.78 37.996 66.364 77.623 106.94 53.669 91.211 36 66 80 103 59 87 2 3 3 3 3 3 12541 5058 1964 5017 8091;8092 10578;10579;10580 10580 3 ETIFSISK Unmodified 923.4964 0.49639797 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 7 0 2 58.713 58.713 2;3 0.0069845 16966 TMT1-6 78.516 29.098 330.87 420.63 299.36 205.58 324.76 349.97 312 421 310 210 331 337 2 2 2 2 2 2 29240 5059 220 5018 8093;8094 10581;10582 10582 2 ETIGDFWQMIFQR Unmodified 1669.7923 0.79226242 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 9 0 1 91.904 91.904 3 6.3317E-05 28054 TMT1-8 93.623 67.493 45.506 57.682 57.533 34.419 79.761 68.08 43 58 58 36 80 66 2 2 2 2 2 2 7718 5060 570 5019 8095 10583;10584 10583 2 ETIPLQETSLYTQDR Unmodified 1792.8843 0.88430813 1230 P50897-2;P50897 PPT1 Palmitoyl-protein thioesterase 1 yes no 0 0 0 0 0 3 0 1 57.352 57.352 3 5.4219E-15 18126 TMT1-2 134.14 110.34 38.334 44.03 12.057 30.03 50.405 45.466 36 44 15 29 51 44 1 1 1 1 1 1 20250 5061 1230 5020 8096 10585 10585 1 ETKDTDIVDEAIYYFK Unmodified 1948.9306 0.93058962 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 1 5.5 0.5 1 1 77.168 77.168 3;4 1.0414E-08 24724 TMT1-4 112.82 84.485 364.38 514.38 538.96 526.24 473.21 563.2 345 515 550 519 494 541 4 4 4 4 4 4 82132 5062 130 5021 8097;8098 10586;10587;10588;10589 10587 4 ETLAQLQQEFQR Unmodified 1489.7525 0.75250609 134 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 0 0 5 0 1 61.918 61.918 2 3.6965E-08 18668 TMT1-4 134.49 105.91 46.598 73.851 40.594 52.715 32.337 84.357 44 73 44 51 36 80 1 1 1 1 1 1 12654 5063 134 5022 8099 10590 10590 1 ETLDHKPR Unmodified 994.51959 0.51959303 2248 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 1 4.5 0.5 1 1 27.075 27.075 4 0.017582 5244 TMT1-3 67.169 47.383 77.277 101.8 90.615 103.16 97.252 136.87 73 102 94 101 102 131 2 2 2 2 2 2 6598.5 5064 2248 5023 8100;8101 10591;10592 10591 2 ETLEPLIQAAQLLQVK Unmodified 1793.0299 0.02985015 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 MYO5A Unconventional myosin-Va yes no 0 0 0 0 0 8 0 2 88.671 88.671 3;4 1.0965E-05 28575 TMT1-7 88.561 70.148 46.528 58.545 65.409 50.644 63.859 52.544 44 59 66 51 65 51 2 2 2 2 2 2 6434.8 5065 3016 5024 8102;8103 10593;10594 10593 2 ETLEQQK Unmodified 874.43961 0.43961137 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 3 0 1 34.711 34.711 3 0.00071325 9213 TMT1-2 86.866 32.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5066 1287 5025 8104 10595 10595 1 ETLIIEPEK Unmodified 1070.5859 0.58594126 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 4 0 1 55.084 55.084 2 0.0023543 16278 TMT1-3 76.465 44.323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5067 118 5026 8105 10596 10596 1 ETLILLLK Unmodified 941.61612 0.61611918 79 O00534;O00534-3;O00534-2 VWA5A von Willebrand factor A domain-containing protein 5A yes no 0 0 0 0 0 8 0 1 75.498 75.498 2 0.012511 23632 TMT1-7 96.492 60.096 46.52 81.19 47.418 59.675 47.466 91.388 44 80 51 58 51 87 1 1 1 1 1 1 7213.5 5068 79 5027 8106 10597 10597 1 ETLLEGMLFSLK Unmodified 1379.737 0.73703895 1972 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 yes yes 0 0 0 0 0 8 0 1 88.438 88.438 3 0.00012046 28509 TMT1-7 97.214 72.871 30.733 35.658 34.294 53.061 33.934 37.408 29 36 36 51 36 36 1 1 1 1 1 1 6137.1 5069 1972 5028 8107 10598 10598 1 ETLNISGPPLK Unmodified 1167.6499 0.6499385 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 6 0 1 56.183 56.183 3 7.1424E-05 16556 TMT1-5 103.91 74.166 369.01 633.73 382.13 387.83 483.95 465.89 349 625 406 384 495 450 3 3 3 3 3 3 15702 5070 932 5029 8108 10599;10600;10601 10599 3 ETLPAEQDLTTK Unmodified 1344.6773 0.67727546 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 3 0.707 1 2 1 51.16 51.16 2;3 2.7314E-08 15666 TMT1-2 138.63 92.498 437.05 740.78 577.84 433.31 525.73 681.1 414 733 595 437 544 653 6 6 6 6 6 6 85884 5071 890 5030 8109;8110;8111;8112 10602;10603;10604;10605;10606;10607 10605 6 ETLPLLLQHLWQVNR Unmodified 1859.0418 0.041752241 2458 Q96T76-5;Q96T76-9;Q96T76;Q96T76-8 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 0 9 0 1 77.625 77.625 3 0.010734 22661 TMT1-8 48.351 25.434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5072 2458 5031 8113 10608 10608 1 ETLQAWK Unmodified 874.45487 0.45486751 1246 P51606;P51606-2 RENBP N-acylglucosamine 2-epimerase yes no 0 0 0 0 0 7 0 1 50.719 50.719 2 0.033413 13789 TMT1-6 89.142 17.8 68.302 155.27 110.95 110.13 127.3 136.01 65 152 116 109 131 131 1 1 1 1 1 1 8611.3 5073 1246 5032 8114 10609 10609 1 ETLQQHK Unmodified 882.45593 0.45593014 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 4.5 0.5 1 1 27.449 27.449 3 0.0029527 5084 TMT1-4 101.33 34.528 655.34 675.56 734.47 599.5 781.96 551.19 618 688 744 602 792 538 3 3 3 3 3 3 61898 5074 708 5033 8115;8116 10610;10611;10612 10611 3 ETLSSAAK Unmodified 805.41815 0.41814765 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 5 0 1 35.728 35.728 2 0.037173 8350 TMT1-4 78.192 25.103 122.59 166.52 173.7 137.43 162.41 173.39 116 167 176 138 167 167 1 1 1 1 1 1 12977 5075 2687 5034 8117 10613 10613 1 ETLSTIK Unmodified 790.44363 0.44363412 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 5.5 0.5 1 1 43.595 43.595 2 0.0025334 11465 TMT1-4 141.78 55.696 989.94 1793.3 1259.7 1159.9 1459.3 1490.2 938 1768 1316 1155 1495 1437 3 3 3 3 3 3 226700 5076 1684 5035 8118;8119 10614;10615;10616 10614 3 ETLSTIKDNSEIHHK Unmodified 1750.885 0.88497683 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 6 0 1 39.351 39.351 5 1.7884E-06 9903 TMT1-5 102.52 72.037 292.49 582.78 301.48 235.44 357.82 596.34 277 571 322 238 372 569 1 1 1 1 1 1 22807 5077 1684 5036 8120 10617 10617 1 ETLVYLTHLDYVDTER Unmodified 1965.9684 0.96837211 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 4 0 1 66.203 66.203 3 1.8609E-23 20669 TMT1-3 168.5 154.41 54.11 73.339 40.937 44.86 42.138 53.164 51 73 44 44 44 51 1 1 1 1 1 1 23224 5078 121 5037 8121 10618 10618 1 ETLYETIIGYFDK Unmodified 1590.7817 0.78174053 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 7 0 1 90.138 90.138 3 0.00016132 29099 TMT1-6 89.629 69.862 69.103 71.154 47.524 68.262 55.463 60.245 65 72 51 66 58 58 2 2 2 2 2 2 6244 5079 2305 5038 8122 10619;10620 10619 2 ETMVTSTTEPSR Unmodified 1337.6133 0.613295 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 3 0 2 35.89 35.89 2;3 0.00058297 9688 TMT1-2 97.734 66.312 123.24 159.67 71.671 105.23 105.29 113.19 116 159 80 102 109 109 2 2 2 2 2 2 13202 5080 700 5039 8123;8124 10621;10622 10621 2 ETNEPVK Unmodified 815.4025 0.40249759 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 3 0 1 31.482 31.482 2 0.0099567 7927 TMT1-2 110.12 46.972 139.44 88.721 113.2 141.12 157.59 95.707 131 94 116 138 160 94 1 1 1 1 1 1 11589 5081 675 5040 8125 10623 10623 1 ETNLDSLPLVDTHSK Unmodified 1667.8366 0.83662965 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 3.83 1.34 1 3 2 54.658 54.658 2;3;4 5.2657E-22 16179 TMT1-3 173.06 140.56 1261.4 1963.8 1296 1273.3 1588.3 2089.9 1192 1946 1365 1263 1643 2003 10 10 10 10 10 10 591550 5082 575 5041 8126;8127;8128;8129;8130;8131 10624;10625;10626;10627;10628;10629;10630;10631;10632;10633 10629 10 ETPALTINR Unmodified 1013.5506 0.55055881 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 5 0 1 42.39 42.39 2 0.0020188 10996 TMT1-4 78.149 41.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5083 1102 5042 8132 10634 10634 1 ETPASKPTR Unmodified 985.51926 0.51925868 2016 Q6JBY9 RCSD1 CapZ-interacting protein yes yes 0 0 0 0 1 5 0 1 26.26 26.26 3 0.023421 4646 TMT1-4 63.426 37.852 54.248 42.424 43.883 20.336 58.18 45.244 51 44 44 22 58 44 1 1 1 1 1 1 2551.6 5084 2016 5043 8133 10635 10635 1 ETPEHPLK Unmodified 949.4869 0.48689592 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 4 0 1 31.322 31.322 3 0.0068095 6858 TMT1-3 78.77 48.2 122.64 207.66 131.06 116.34 140.09 181.49 116 205 138 116 145 174 1 1 1 1 1 1 10372 5085 2162 5044 8134 10636 10636 1 ETPENLAK Unmodified 900.45526 0.45526144 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 4 0 1 39.357 39.357 2 0.0010111 10067 TMT1-3 111.17 52.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5086 2740 5045 8135 10637 10637 1 ETPFELIEALLK Unmodified 1401.7755 0.77553294 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 7 0 1 100.31 100.31 3 0.00030301 32603 TMT1-6 89.403 53.119 30.647 51.609 35.172 36.156 58.259 21.79 29 51 37 36 58 22 2 2 2 2 2 2 3900.1 5087 1619 5046 8136 10638;10639 10638 2 ETPHSPPGGVK Unmodified 1104.5564 0.55637247 2016 Q6JBY9;Q6JBY9-2 RCSD1 CapZ-interacting protein yes no 0 0 0 0 0 5 0 1 30.397 30.397 3 0.0065586 6239 TMT1-4 65.5 34.427 77.337 117.08 67.579 89.63 76.196 98.03 73 116 73 87 80 94 1 1 1 1 1 1 7857.8 5088 2016 5047 8137 10640 10640 1 ETPIGLVPK Unmodified 952.55933 0.55933258 1908 Q16822;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 6 0 1 54.315 54.315 2 0.0067747 15844 TMT1-5 94.302 68.566 108.6 76.502 77.487 88.34 113.4 112.96 102 80 80 87 116 109 1 1 1 1 1 1 9639.2 5089 1908 5048 8138 10641 10641 1 ETPLDLQHR Unmodified 1107.5673 0.5672715 2529 Q9BT22-2;Q9BT22 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 0 0 0 0 0 3 0 1 36.776 36.776 3 0.00039092 10029 TMT1-2 108.15 75.514 22.937 66.677 55.999 59.292 40.668 76.658 22 65 58 58 44 73 1 1 1 1 1 1 9431.6 5090 2529 5049 8139 10642 10642 1 ETPQSLAFTR Unmodified 1148.5826 0.58258722 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 5 0 1 46.074 46.074 2 0.0010845 12433 TMT1-4 103.69 60.851 130.3 166.54 141.4 108.64 109.83 189.81 123 167 145 109 116 181 1 1 1 1 1 1 18066 5091 2852 5050 8140 10643 10643 1 ETQALILAPTR Unmodified 1211.6874 0.68738664 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 0 5 0 1 51.165 51.165 2 0.0061 14460 TMT1-4 84.821 49.668 76.93 123.5 130.45 78.518 61.002 98.463 73 123 131 80 65 94 1 1 1 1 1 1 13936 5092 1059 5051 8141 10644 10644 1 ETQALVLAPTR Unmodified 1197.6717 0.67173657 1765 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 0 5 0 1 48.041 48.041 2 0.025314 13212 TMT1-4 68.515 61.137 68.905 102.98 53.943 51.332 63.571 60.014 65 102 58 51 65 58 1 1 1 1 1 1 9502 5093 1765 5052 8142 10645 10645 1 ETQAQYQALER Unmodified 1335.6419 0.64189301 2453 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 0 0 2 0 1 38.172 38.172 2 0.0089478 10244 TMT1-1 56.02 20.061 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5094 2453 5053 8143 10646 10646 1 ETQFAQIFEPLHK Unmodified 1586.8093 0.80929269 2743 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 0 7 0 1 64.213 64.213 3 8.4447E-05 19135 TMT1-6 73.156 50.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5095 2743 5054 8144 10647 10647 1 ETQPISK Unmodified 801.42323 0.42323303 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 4 0 1 34.783 34.783 2 0.0092177 8243 TMT1-3 113.26 46.221 108.47 83.711 92.269 86.856 145.44 65.14 102 87 94 87 145 65 1 1 1 1 1 1 11829 5096 2717 5055 8145 10648 10648 1 ETQTDSISR Unmodified 1035.4833 0.4832671 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 2 0 1 27.216 27.216 2 1.7489E-05 5922 TMT1-1 127.94 76.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5097 118 5056 8146 10649 10649 1 ETSGNLEQLLLAVVK Unmodified 1612.9036 0.903587 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 7 0 1 87.486 87.486 3 1.3081E-10 28076 TMT1-6 120.53 100.95 53.711 79.785 102.47 63.62 70.063 98.205 51 80 102 65 73 94 1 1 1 1 1 1 29158 5098 578 5057 8147 10650 10650 1 ETSMVHELNR Unmodified 1214.5714 0.5713706 1396 P61619;P61619-3 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 yes no 0 0 0 0 0 3 0 1 34.383 34.383 3 0.0065195 9030 TMT1-2 68.893 45.465 161.49 140.86 151.17 114.83 156.93 150.09 152 145 153 116 160 145 2 2 2 2 2 2 8362.1 5099 1396 5058 8148 10651;10652 10651 2 ETSNLYK Unmodified 853.41815 0.41814765 263;2504 O75323;O75323-2;Q9BPW8 GBAS;NIPSNAP1 Protein NipSnap homolog 2;Protein NipSnap homolog 1 no no 0 0 0 0 0 5 0 1 38.277 38.277 2 0.010348 9391 TMT1-4 108.46 54.751 108.18 106.63 122.65 78.432 90.307 128.54 102 109 123 80 94 123 1 1 1 1 1 1 10456 5100 263;2504 5059 8149 10653 10653 1 ETSYGLSFFKPR Unmodified 1430.7194 0.71941505 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 1 9 0 1 57.633 57.633 3 0.00080104 14788 TMT1-8 80.871 54.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5101 3023 5060 8150 10654 10654 1 ETTDTDTADQVIASFK Unmodified 1740.8054 0.8053891 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4.5 0.5 1 1 66.896 66.896 3 3.7462E-20 20979 TMT1-3 160.65 150.9 695.66 928.58 775.66 762.48 819.56 913.63 657 929 803 754 847 879 4 4 4 4 4 4 189950 5102 195 5061 8151;8152 10655;10656;10657;10658 10657 4 ETTGTGPNVYHENDTIAK Unmodified 1945.9017 0.9017491 1937 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 0 0 0 0 0 3 0 1 40.258 40.258 3 2.0431E-19 11404 TMT1-2 136.1 113 46.474 81.061 55.368 51.405 55.176 91.168 44 80 58 51 58 87 1 1 1 1 1 1 11627 5103 1937 5062 8153 10659 10659 1 ETTLSYYK Unmodified 1003.4862 0.48622722 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 4.8 2.04 1 2 1 1 47.357 47.357 2;3 4.1139E-08 12926 TMT1-4 176.29 94.994 2724.8 3649.2 3857.3 2864.4 3251.2 3471.9 2578 3663 3898 2887 3348 3344 8 8 8 8 8 8 478470 5104 2112 5063 8154;8155;8156;8157;8158 10660;10661;10662;10663;10664;10665;10666;10667 10662 8 ETTVGAVTVTHK Unmodified 1241.6616 0.66156582 3031 Q9Y5L0-3;Q9Y5L0;Q9Y5L0-5;Q9Y5L0-1 TNPO3 Transportin-3 yes no 0 0 0 0 0 5 0 1 37.77 37.77 3 0.018418 9180 TMT1-4 52.576 27.19 227.48 319.57 269.61 244.01 177.43 416.01 215 319 278 241 194 395 1 1 1 1 1 1 10533 5105 3031 5064 8159 10668 10668 1 ETTVVWDK Unmodified 976.48656 0.48656157 991 P32189-1;P32189-4;P32189-2;P32189;Q14409 GK;GK3P Glycerol kinase;Putative glycerol kinase 3 yes no 0 0 0 0 0 5 0 1 50.77 50.77 2 0.0035185 14304 TMT1-4 131.06 32.065 107.93 121.04 152.59 91.415 118.72 167.17 102 123 152 94 123 160 1 1 1 1 1 1 11353 5106 991 5065 8160 10669 10669 1 ETVAYLQAHALTTEGIFR Unmodified 2019.0425 0.042540102 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 7 0 1 63.897 63.897 3 2.1135E-19 19009 TMT1-6 135.89 117.52 99.866 76.674 102.41 64.043 47.778 76.455 94 80 102 65 51 73 1 1 1 1 1 1 38494 5107 1616 5066 8161 10670 10670 1 ETVESHFR Unmodified 1003.4723 0.47230849 328 O94886 TMEM63A CSC1-like protein 1 yes yes 0 0 0 0 0 3 0 1 30.388 30.388 3 0.00055584 7489 TMT1-2 134.48 72.014 37.822 73.904 72.85 33.933 57.042 60.2 36 73 73 36 58 58 1 1 1 1 1 1 6755.8 5108 328 5067 8162 10671 10671 1 ETVINPEK Unmodified 928.48656 0.48656157 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 0 4 0 1 41.745 41.745 2 0.028654 11053 TMT1-3 82.75 41.763 99.639 99.786 121.02 125.29 102.79 159.1 94 102 123 123 109 152 1 1 1 1 1 1 15246 5109 2194 5068 8163 10672 10672 1 ETVNVITLYK Unmodified 1178.6547 0.65468953 2494 Q99816 TSG101 Tumor susceptibility gene 101 protein yes yes 0 0 0 0 0 7 0 1 61.274 61.274 2 0.00042316 18004 TMT1-6 118.23 60.738 46.319 104.38 61.555 51.159 48.664 67.901 44 102 65 51 51 65 1 1 1 1 1 1 7716 5110 2494 5069 8164 10673 10673 1 ETVQTTEDQILK Unmodified 1403.7144 0.71438925 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 2.25 0.829 1 1 2 51.913 51.913 3;4 6.6547E-19 15994 TMT1-2 179.98 114.11 1402.6 1621.8 1834.8 1403 1993.2 1397.1 1325 1642 1850 1418 2013 1364 6 6 6 6 6 6 403490 5111 776 5070 8165;8166;8167;8168 10674;10675;10676;10677;10678;10679 10678 6 ETVQTTEDQILKR Unmodified 1559.8155 0.81550028 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 3 1.22 1 1 2 46.189 46.189 2;3 5.5697E-48 12643 TMT1-3 229.68 184.31 1787.1 2131.2 1890.6 1606.2 1762.7 2322.6 1686 2146 1940 1603 1832 2226 5 5 5 5 5 5 576590 5112 776 5071 8169;8170;8171;8172 10680;10681;10682;10683;10684 10683 5 ETVSEESNVLCLSK Unmodified 1593.7556 0.75560214 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 4 0 3 56.699 56.699 2;3;4 4.2006E-27 16881 TMT1-3 187.78 170.76 299.73 425.92 299.31 251.67 431.56 376.78 283 424 312 254 436 365 3 3 3 3 3 3 134330 5113 685 5072 8173;8174;8175 10685;10686;10687 10685 3 ETVSIEVK Unmodified 903.49131 0.49131259 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 4 0 1 47.554 47.554 2 0.0044478 13287 TMT1-3 124.98 66.066 130.48 159.5 115.94 155.3 208.55 207.25 123 160 123 152 213 200 1 1 1 1 1 1 17297 5114 1247 5073 8176 10688 10688 1 ETVTLTVYNLGTAINTLSNEFDRR Unmodified 2726.3875 0.38752281 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 1 8 0 1 87.585 87.585 4 3.5889E-05 28184 TMT1-7 62.274 52.462 31.906 20.754 30.074 21.998 13.595 31.592 30 22 30 22 15 30 1 1 1 1 1 1 2324.8 5115 2121 5074 8177 10689 10689 1 ETVVEVPQVTWEDIGGLEDVK Unmodified 2341.1689 0.16892241 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 4.5 0.5 1 1 81.018 81.018 4 3.3747E-05 26396 TMT1-3 65.784 51.014 77.509 71.149 77.564 97.353 98.839 98.45 73 73 80 95 102 95 2 2 2 2 2 2 11572 5116 1311 5075 8178;8179 10690;10691 10690 2 ETVVEVPQVTWEDIGGLEDVKR Unmodified 2497.27 0.27003344 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 5.33 0.471 2 1 73.368 73.368 3;4 2.3106E-29 23127 TMT1-4 139 119.28 237.86 349.16 303.75 262.35 256.28 379.64 225 348 312 261 269 363 4 4 4 4 4 4 157850 5117 1311 5076 8180;8181;8182 10692;10693;10694;10695 10692 4 ETVYCLNDDDETEVLKEDIIQGFR Unmodified 2900.3386 0.33858329 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 4 0 2 79.078 79.078 3;4 1.5057E-13 25628 TMT1-3 101.75 90.642 146.84 142.93 86.366 159.55 134.74 104.89 138 145 95 153 138 102 4 4 4 4 3 4 35547 5118 676 5077 8183;8184 10696;10697;10698;10699 10696 4 ETWLSENQR Unmodified 1161.5415 0.54145068 1546;651 Q01082;Q01082-3;Q01082-2;O15020-2;O15020;P11277-2;P11277;P11277-3 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 0 0 0 0 0 4 0 1 43.309 43.309 2 1.3345E-05 11624 TMT1-3 155.07 112.67 84.538 115.7 120.84 109.4 134.95 127.27 80 116 123 109 138 123 1 1 1 1 1 1 19716 5119 1546;651 5078 8185 10700 10700 1 ETYGEMADCCAK Oxidation (M) 1449.5211 0.52105087 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 1 0 0 2.5 0.5 1 1 36.717 36.717 3 2.5182E-05 9915 TMT1-2 83.182 71.912 77.27 109.34 85.322 41.803 64.009 60.001 73 109 87 44 65 58 1 1 1 1 1 1 6028 + 5120 28 5079 8186;8187 10701;10702 10702 5 2 ETYGEMADCCAK Unmodified 1433.5261 0.52613625 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 3 0 1 43.134 43.134 3 7.2993E-09 12508 TMT1-2 134.2 122.22 223.72 309.47 188.99 246.11 263.22 412.49 211 308 203 240 276 394 2 2 2 2 2 2 74046 + 5121 28 5079 8188 10703;10704 10703 2 ETYNALTNWLTDAR Unmodified 1666.7951 0.79509919 809 P20338 RAB4A Ras-related protein Rab-4A yes yes 0 0 0 0 0 6 0 1 72.663 72.663 3 0.00016672 23082 TMT1-5 80.632 57.604 30.599 51.474 43.446 20.649 42.958 61.668 29 51 44 22 44 59 1 1 1 1 1 1 5967.3 5122 809 5080 8189 10705 10705 1 EVAAFAQFGSDLDAATQQLLSR Unmodified 2337.1601 0.16008906 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0.816 1 1 1 90.087 90.087 3 1.8043E-63 29184 TMT1-6 200.27 174.72 166.99 149.51 121.19 143.88 218.22 184.59 157 153 127 142 221 179 6 6 6 6 6 6 120930 5123 888 5081 8190;8191;8192 10706;10707;10708;10709;10710;10711;10712 10710 7 EVAAPDVGR Unmodified 912.46649 0.46649483 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 2.5 0.5 1 1 37.056 37.056 2 0.00033385 9845 TMT1-1 109.11 66.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5124 1767 5082 8193;8194 10713;10714 10713 2 EVAAQVK Unmodified 743.41775 0.41775372 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 5 0 1 36.004 36.004 2 0.011136 8450 TMT1-4 105.12 11.854 1361 1350.6 1488 1396.9 1617.7 1128.6 1283 1379 1514 1387 1645 1102 1 1 1 1 1 1 107480 5125 2468 5083 8195 10715 10715 1 EVAELEANLPCTCK Unmodified 1632.7487 0.74874262 2348 Q969M7-6;Q969M7;Q969M7-2;Q969M7-5;Q969M7-4 UBE2F NEDD8-conjugating enzyme UBE2F yes no 0 0 0 0 0 4 0 1 59.25 59.25 3 0.00066886 17962 TMT1-3 74.769 62.142 38.154 43.528 42.817 44.605 49.735 45.485 36 44 44 44 51 44 1 1 1 1 1 1 7190.4 5126 2348 5084 8196 10716 10716 1 EVAFWTNLFAK Unmodified 1324.6816 0.68157298 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 9 0 1 81.891 81.891 3 0.00037317 24281 TMT1-8 84.507 51.419 46.514 81.173 48.501 35.391 56.718 67.672 44 80 51 36 58 65 1 1 1 1 1 1 6167.3 5127 853 5085 8197 10717 10717 1 EVAGLWIK Unmodified 914.52255 0.52255314 766 P17900 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 0 0 0 0 0 7 0 1 62.961 62.961 2 0.022303 18617 TMT1-6 87.323 33.165 77.294 116.96 74.844 96.722 82.906 106.37 73 116 80 94 87 102 1 1 1 1 1 1 7859.9 5128 766 5086 8198 10718 10718 1 EVANSTANLVK Unmodified 1144.6088 0.60880197 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 4.6 1.85 1 2 2 44.825 44.825 2;3 3.7717E-23 12001 TMT1-5 193.83 170.06 4269.8 4919.8 5696.5 3800.9 4351.9 6168.4 4034 4984 5714 3863 4530 5903 7 7 7 7 7 7 1469200 5129 3010;3014 5087 8199;8200;8201;8202;8203 10719;10720;10721;10722;10723;10724;10725 10725 7 EVASAASDGLLR Unmodified 1187.6146 0.61461563 2252 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 0 3.5 0.5 1 1 48.137 48.137 2;3 2.3908E-18 13498 TMT1-3 183.78 163.04 176.94 193.03 214.58 173.67 197.91 218.21 167 196 217 174 204 210 2 2 2 2 2 2 33183 5130 2252 5088 8204;8205 10726;10727 10727 2 EVASAKPK Unmodified 828.47052 0.47051757 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 6 0 1 31.876 31.876 3 0.030631 6981 TMT1-5 65.156 33.396 539.89 333.4 409.7 251.31 507.42 391.67 507 354 410 261 509 381 1 1 1 1 1 1 28737 5131 3006 5089 8206 10728 10728 1 EVATDHK Unmodified 798.38718 0.38718187 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 3 0 1 25.886 25.886 3 0.034093 5705 TMT1-2 57.177 31.284 54.182 57.351 42.321 35.301 81.076 28.6 51 58 44 36 80 29 1 1 1 1 1 1 2142.6 5132 2325 5090 8207 10729 10729 1 EVAWNLTSVDLVR Unmodified 1500.7936 0.79364262 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 6 0 1 70.218 70.218 3 0.0024731 22118 TMT1-5 52.265 26.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5133 1824 5091 8208 10730 10730 1 EVCEEAGVK Unmodified 1019.4594 0.45936054 380 O95989 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes yes 0 0 0 0 0 2 0 1 38.439 38.439 2 0.0020947 10348 TMT1-1 106.42 48.564 92.121 107.84 115.39 71.468 76.738 106.54 87 109 116 73 80 102 1 1 1 1 1 1 9763.8 5134 380 5092 8209 10731 10731 1 EVCFACVDGK Unmodified 1183.5002 0.5001795 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5 0 1 52.557 52.557 3 0.013088 14990 TMT1-4 61.344 35.28 233.21 413.23 308.66 260.65 330.95 309.29 221 408 320 261 338 299 1 1 1 1 1 1 31069 5135 1540 5093 8210 10732 10732 1 EVCFIDIACDEIPER Unmodified 1864.8335 0.83353488 2894 Q9UKF7-2;Q9UKF7 PITPNC1 Cytoplasmic phosphatidylinositol transfer protein 1 yes no 0 0 0 0 0 3 0 1 70.648 70.648 3 2.873E-06 23330 TMT1-2 101.53 90.413 15.737 36.757 29.093 0 22.228 22.818 15 36 29 0 22 22 1 1 1 0 1 1 5504.1 5136 2894 5094 8211 10733 10733 1 EVCFTIENK Unmodified 1138.5329 0.53285983 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 54.547 54.547 2 0.00021716 15787 TMT1-4 145.17 101.36 138.91 173.6 129.86 187.2 153.86 142.72 131 174 138 181 160 138 1 1 1 1 1 1 23337 5137 2071 5095 8212 10734 10734 1 EVCHPDIGGK Unmodified 1110.5128 0.51279309 1941 Q4KMQ2-3;Q4KMQ2;Q4KMQ2-4;Q4KMQ2-2 ANO6 Anoctamin-6 yes no 0 0 0 0 0 4 0 1 36.218 36.218 3 0.017414 8885 TMT1-3 57.348 34.707 130.08 204.79 145.34 138.67 186.18 180.17 123 203 152 138 190 174 1 1 1 1 1 1 36506 5138 1941 5096 8213 10735 10735 1 EVDDFFEQEK Unmodified 1284.551 0.55101232 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 2 0 1 61.155 61.155 3 1.5723E-05 19308 TMT1-1 105.98 81.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5139 3038 5097 8214 10736 10736 1 EVDDLEQWIAER Unmodified 1501.7049 0.7048872 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 71.793 71.793 3 0.029359 22815 TMT1-3 48.659 18.852 15.857 21.981 21.402 22.52 13.314 39.062 15 22 22 22 15 37 1 1 1 1 1 1 3152.8 5140 1546 5098 8215 10737 10737 1 EVDDLGPEVGDIK Unmodified 1384.6722 0.67219008 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 2.5 0.5 1 1 59.255 59.255 3 5.2123E-05 18568 TMT1-1 98.531 56.991 162.04 195.46 192.74 152.29 183.67 204.76 153 197 196 153 189 197 3 3 3 3 3 3 28624 5141 153 5099 8216;8217 10738;10739;10740 10738 3 EVDEDFDSK Unmodified 1082.4404 0.44039923 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 2 0 1 46.376 46.376 2 0.00039528 13458 TMT1-1 138.98 116.98 107.36 281.36 111.86 85.427 159.35 119.11 102 273 123 87 160 116 1 1 1 1 1 1 30720 5142 2376 5100 8218 10741 10741 1 EVDEQMLNVQNK Unmodified 1445.682 0.68204326 537;1493 P07437;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 0 3.29 1.28 1 1 1 3 1 52.366 52.366 2;3;4 7.6665E-56 15139 TMT1-3 238.51 227.3 1208.8 1910.9 1170.7 1078.3 1370.7 1865.8 1142 1891 1238 1074 1419 1787 9 9 9 9 9 9 503190 5143 537;1493 5101 8219;8220;8221;8222;8223;8224;8225 10742;10743;10744;10745;10746;10747;10748;10749;10750 10747 9 EVDEQMLNVQNK Oxidation (M) 1461.677 0.67695789 537;1493 P07437;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 0 0 2 0 1 45.217 45.217 3 4.8937E-06 13030 TMT1-1 92.925 60.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5144 537;1493 5101 8226 10751 10751 90 1 EVDGLDVSK Unmodified 960.47639 0.47639081 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 49.381 49.381 2 0.034409 14066 TMT1-3 72.243 5.814 68.438 124.35 114.21 78.492 113.85 112.95 65 123 116 80 116 109 1 1 1 1 1 1 7877 5145 1763 5102 8227 10752 10752 1 EVDIGIPDATGR Unmodified 1241.6252 0.62518031 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2.67 0.471 1 2 55.455 55.455 2;3 2.834E-10 17068 TMT1-1 161.19 106.64 306.91 429.89 351.04 322.87 375.18 369.86 290 429 363 321 385 357 5 5 5 5 5 5 190900 5146 1311 5103 8228;8229;8230 10753;10754;10755;10756;10757 10753 5 EVDILISTALIPGK Unmodified 1467.8548 0.8548459 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 7 0 1 80.015 80.015 3 4.6893E-05 25272 TMT1-6 89.959 66.733 92.019 131.3 112.65 101.55 113.05 105.51 87 131 116 101 116 102 2 2 2 2 2 2 14656 5147 1702 5104 8231 10758;10759 10758 2 EVDLKDYEDQQK Unmodified 1508.6995 0.69946747 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 3.38 1.22 1 1 1 4 1 48.676 48.676 3;4 2.5109E-09 14546 TMT1-1 150.21 112.19 10557 13835 10660 9209.5 11148 15753 9963 13839 11048 9199 11579 15076 12 12 12 12 12 12 1715500 5148 437 5105 8232;8233;8234;8235;8236;8237;8238;8239 10760;10761;10762;10763;10764;10765;10766;10767;10768;10769;10770;10771 10761 12 EVDPQGLR Unmodified 912.46649 0.46649483 1226;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM3 Dynamin-2;Dynamin-3 no no 0 0 0 0 0 3 0 1 37.475 37.475 2 0.0067957 10307 TMT1-2 70.856 19.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5149 1226;2942 5106 8240 10772 10772 1 EVDQQLLSVQTR Unmodified 1414.7416 0.74160705 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 3.25 1.48 1 1 1 1 51.025 51.025 2 4.1015E-85 14669 TMT1-3 266.12 228.62 1337.9 1688.5 1481.3 1120.1 1305.3 1640.6 1263 1695 1515 1128 1351 1574 4 4 4 4 4 4 504680 5150 2650 5107 8241;8242;8243;8244 10773;10774;10775;10776;10777 10776 5 EVDRNEGLK Unmodified 1058.5356 0.53563702 2700 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 1 4 0 1 32.237 32.237 3 0.038773 7224 TMT1-3 56.013 13.618 108.05 145.12 112.05 94.507 82.751 113.83 102 145 116 94 87 109 1 1 1 1 1 1 5935.9 5151 2700 5108 8245 10778 10778 1 EVDRPGSK Unmodified 886.45084 0.45084476 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 1 4 0 1 26.598 26.598 3 0.033792 5044 TMT1-3 63.816 37.773 235.3 315.61 220.65 254.4 361.38 254.06 222 315 233 251 365 248 1 1 1 1 1 1 17303 5152 1061 5109 8246 10779 10779 1 EVDVFKEK Unmodified 992.51786 0.51786169 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 1 5 0 1 47.542 47.542 3 0.015333 13014 TMT1-4 76.228 47.27 479.99 702.29 606.52 492.22 382.71 776.85 454 700 622 490 413 739 1 1 1 1 1 1 36786 5153 876 5110 8247 10780 10780 1 EVDVGLAADVGTLQR Unmodified 1541.8049 0.80493559 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 60.883 60.883 3 1.577E-14 19578 TMT1-2 111.07 65.816 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5154 1663 5111 8248;8249 10781;10782 10781 2 EVDVNLPK Unmodified 912.49165 0.49164694 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 51.25 51.25 2 0.012344 14744 TMT1-3 96.711 33.225 256.4 306.66 289.02 113.69 187.26 243.03 242 309 290 123 192 233 1 1 1 1 1 1 24392 5155 1632 5112 8250 10783 10783 1 EVDYSGLR Unmodified 937.45051 0.45051041 2901 Q9UKY7-2;Q9UKY7 CDV3 Protein CDV3 homolog yes no 0 0 0 0 0 2.5 0.5 1 1 42.279 42.279 2 7.0884E-08 12119 TMT1-2 173.68 108.92 341.04 491.71 334.65 360.78 329.54 490.55 322 489 353 354 347 469 3 3 3 3 3 3 50764 5156 2901 5113 8251;8252 10784;10785;10786 10786 3 EVEEDEYK Unmodified 1039.4346 0.43458558 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 2 0 2 39.731 39.731 2 1.6824E-11 10907 TMT1-1 152.59 92.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5157 708 5114 8253;8254 10787;10788 10788 2 EVEEEPGIHSLK Unmodified 1365.6776 0.67760981 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 2.67 0.471 1 2 43.208 43.208 3;4 1.0269E-09 12380 TMT1-1 122.39 83.99 393.08 517.93 401.93 388.01 470.02 444.97 371 518 418 385 481 430 2 2 2 2 2 2 54244 5158 3017 5115 8255;8256;8257 10789;10790;10791 10789 3 EVEELEQLTQQLMQDMEHPQR Unmodified 2610.2054 0.20540104 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 4.5 0.5 1 1 89.579 89.579 4 0.00048073 29385 TMT1-4 53.553 44.734 78.734 55.309 65.447 50.489 71.934 91.755 74 58 66 51 74 88 3 3 3 3 3 3 7825 5159 1881 5116 8258;8259 10792;10793;10794 10793 3 EVEELILTESK Unmodified 1288.6762 0.67621283 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6;Q9BZZ5-1;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 3 0 1 65.431 65.431 2 9.1797E-05 21329 TMT1-2 113.69 67.529 30.605 51.492 42.356 45.071 26.422 53.612 29 51 44 44 29 51 1 1 1 1 1 1 5220.3 5160 2591 5117 8260 10795 10795 1 EVEERPAPTPWGSK Unmodified 1581.7787 0.77872084 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 1 5 0 2 43.851 43.851 3;4 2.148E-05 11559 TMT1-4 94.673 74.834 1454.9 2110.9 1838.3 1389.4 1953.2 1848.1 1376 2105 1880 1405 1989 1786 2 2 2 2 2 2 191220 5161 128 5118 8261;8262 10796;10797 10796 2 EVEGERR Unmodified 873.43044 0.43044367 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 1.5 0.5 1 1 17.197 17.197 3 0.0028712 3087 TMT 1-phospho 113.5 40.251 35.891 47.667 58.894 42.719 40.932 60.66 34 48 59 43 43 58 3 3 3 3 3 3 6994.2 5162 519;520;521 5119 8263;8264 10798;10799;10800 10799 3 EVEGLKDLLVGPGVELLLTPR Unmodified 2246.2886 0.28858403 2337 Q92974-3;Q92974-2;Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 1 8 0 1 87.559 87.559 4 0.0045987 28178 TMT1-7 46.578 45.151 39.276 43.591 34.506 36.659 33.625 68.33 37 44 36 36 36 65 1 1 1 1 1 1 3267.8 5163 2337 5120 8265 10801 10801 1 EVEMGPFK Unmodified 935.44225 0.44225391 2116 Q86VP6;Q86VP6-2;O75155-2;O75155 CAND1;CAND2 Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2 yes no 0 0 0 0 0 5 0 1 54.035 54.035 2 0.021895 15597 TMT1-4 87.616 33.208 84.441 146.74 110.7 125.33 133.41 150.76 80 145 116 123 138 145 1 1 1 1 1 1 10171 5164 2116 5121 8266 10802 10802 1 EVENLILENTQLLETK Unmodified 1885.0044 0.004423261 219 O60271-5;O60271-3;O60271-4;O60271-2;O60271;O60271-9 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 0 0 5 0 1 80.67 80.67 3 7.8986E-09 26018 TMT1-4 111.33 106.11 46.653 42.706 57.676 51.248 56.246 60.223 44 44 58 51 58 58 1 1 1 1 1 1 5506.4 5165 219 5122 8267 10803 10803 1 EVENSEDPK Unmodified 1045.4564 0.45638365 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 2 0.816 1 1 1 33.011 33.011 3 0.0012793 8488 TMT1-2 94.692 62.277 453.13 328.96 388.94 441.55 453.88 295.12 426 344 398 433 463 289 4 4 4 4 4 4 68290 5166 776 5123 8268;8269;8270 10804;10805;10806;10807 10807 4 EVENSEDPKFR Unmodified 1348.6259 0.62590859 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 2.33 0.471 2 1 36.881 36.881 3;4 0.00037592 10015 TMT1-2 100.09 48.088 1427.1 1704.7 1619.2 1125.8 1375.2 1791.1 1347 1718 1644 1142 1423 1717 3 3 3 3 3 3 171280 5167 776 5124 8271;8272;8273 10808;10809;10810 10810 3 EVEQFTQVAK Unmodified 1177.5979 0.59790293 382 O96000;O96000-2 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 0 0 5 0 1 50.77 50.77 3 0.00045991 14287 TMT1-4 99.568 86.952 160.24 293.89 231.4 196.66 200.94 282.09 152 290 239 196 210 270 1 1 1 1 1 1 18811 5168 382 5125 8274 10811 10811 1 EVEQLIK Unmodified 857.48583 0.48583328 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 4 0 1 51.151 51.151 2 0.038594 14684 TMT1-3 86.833 27.852 122.64 202.25 136.53 170.7 196.45 234.24 116 200 145 167 203 225 1 1 1 1 1 1 28470 5169 893 5126 8275 10812 10812 1 EVESMGAHLNAYSTR Unmodified 1663.7624 0.76241885 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 4 0 1 42.086 42.086 3 7.8911E-15 11152 TMT1-3 130.47 122.68 61.069 141.45 75.878 42.381 63.176 83.477 58 138 80 44 65 80 1 1 1 1 1 1 8290.9 5170 979 5127 8276 10813 10813 1 EVESPYEVHDYIR Unmodified 1634.7577 0.75765105 2055 Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 47.633 47.633 3 2.9484E-05 14331 TMT1-2 79.875 62.074 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5171 2055 5128 8277 10814 10814 1 EVFAEAVR Unmodified 919.47633 0.47633123 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 4 0 1 45.606 45.606 2 0.0036791 12496 TMT1-3 130.22 49.992 176.1 339.63 231.46 228.99 283.16 311.72 167 334 243 227 291 300 1 1 1 1 1 1 61861 5172 1522 5129 8278 10815 10815 1 EVFDTYLVPISISYDK Unmodified 1887.9506 0.95059678 135 O15228-2;O15228 GNPAT Dihydroxyacetone phosphate acyltransferase yes no 0 0 0 0 0 6 0 1 81.842 81.842 3 0.00058516 26662 TMT1-5 54.237 34.914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5173 135 5130 8279 10816 10816 1 EVFEDAAEIR Unmodified 1177.5615 0.56151742 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 2 0 1 53.298 53.298 2 7.2701E-05 16261 TMT1-1 142.43 98.619 176.61 294.64 183.91 215.45 223.7 264.38 167 291 196 211 232 254 2 2 2 2 2 2 59914 5174 786 5131 8280 10817;10818 10818 2 EVFEMATR Unmodified 981.45897 0.45896661 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 0 4 0 1 49.225 49.225 2 0.0020447 13927 TMT1-3 138.78 92.833 416.5 536.29 418.22 432.16 511.83 569.56 393 537 436 427 527 548 2 2 2 2 2 2 94283 5175 1393;556 5132 8281 10819;10820 10819 2 EVFGTFGIPFLLR Unmodified 1494.8235 0.82348619 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 9 0 1 89.009 89.009 3 3.9311E-06 27042 TMT1-8 98.407 63.686 62.64 96.346 30.524 76.638 70.784 59.808 59 95 37 73 73 58 2 2 2 2 2 2 6930.4 5176 2339 5133 8282 10821;10822 10821 2 EVFPFPEVSQDELNEINQFLGPVEK Unmodified 2903.4229 0.42290526 2659 Q9H845 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 0 0 0 0 0 6 0 1 96.884 96.884 4 0.030145 32097 TMT1-5 29.918 23.342 7.4004 15.368 5.5632 23.602 5.9874 7.2911 7 15 7 22 7 7 1 1 1 1 1 1 1526.4 5177 2659 5134 8283 10823 10823 1 EVFPVLAAK Unmodified 972.56442 0.56441796 2267 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein yes yes 0 0 0 0 0 7 0 1 62.685 62.685 2 0.00038771 18491 TMT1-6 139.19 66.639 223.26 304.97 269.19 224.81 269.79 280.12 211 305 276 225 277 270 2 2 2 2 2 2 30266 5178 2267 5135 8284 10824;10825 10824 2 EVFSKPISWEELLQ Unmodified 1703.877 0.8770379 1985 Q5VSL9-2;Q5VSL9 STRIP1 Striatin-interacting protein 1 yes no 0 0 0 0 1 7 0 1 81.168 81.168 3 0.025708 25740 TMT1-6 51.546 38.566 23.113 67.168 25.924 29.341 43.108 45.674 22 65 29 29 44 44 1 1 1 1 1 1 5662.3 5179 1985 5136 8285 10826 10826 1 EVGEDYQIAIPDSHLPVSEER Unmodified 2382.1339 0.13393388 2803 Q9NZN5-2;Q9NZN5 ARHGEF12 Rho guanine nucleotide exchange factor 12 yes no 0 0 0 0 0 3 0 1 58.821 58.821 3 0.00035817 18763 TMT1-2 55.128 46.082 7.2678 22.554 21.766 14.55 29.145 15.158 7 22 22 15 29 15 1 1 1 1 1 1 3798.5 5180 2803 5137 8286 10827 10827 1 EVGFFIIR Unmodified 979.5491 0.54910224 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 8 0 1 67.43 67.43 2 0.0049344 20506 TMT1-7 121.52 102.03 138.9 167.08 138.19 179.08 152.36 197.13 131 168 145 174 160 189 1 1 1 1 1 1 42823 5181 300 5138 8287 10828 10828 1 EVGIPPEQSLETAK Unmodified 1496.7722 0.77223848 1379 P61158;Q9P1U1-2;Q9P1U1;Q9C0K3;Q9P1U1-3 ACTR3;ACTR3B;ACTR3C Actin-related protein 3;Actin-related protein 3B;Actin-related protein 3C yes no 0 0 0 0 0 4 0 2 54.026 54.026 2;3 4.6821E-10 15763 TMT1-3 126.34 100.96 484.14 621.56 518.69 410.42 593.88 646.11 457 623 533 414 607 622 5 5 5 5 5 5 29054 5182 1379 5139 8288;8289 10829;10830;10831;10832;10833 10829 5 EVGKDVSDEK Unmodified 1104.5299 0.52988294 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 1 4 0 1 36.544 36.544 3 0.0025742 8921 TMT1-3 88.021 44.936 493.36 708.35 699.65 529.33 671.87 530.88 467 708 710 534 683 516 1 1 1 1 1 1 75201 5183 271 5140 8290 10834 10834 1 EVGLDLFFPK Unmodified 1163.6227 0.62266112 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 7 0 1 78.322 78.322 2 0.0011282 24627 TMT1-6 103.55 67.351 53.702 111.06 77.419 49.533 84.819 113.77 51 109 80 51 87 109 1 1 1 1 1 1 8467 5184 1770 5141 8291 10835 10835 1 EVGSIIGK Unmodified 801.45962 0.45961853 1843;1844 Q15365;P57723-2;P57723;Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5;P57721-2;P57721-3;P57721-5;P57721-4;P57721 PCBP1;PCBP4;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 0 0 0 6 0 1 50.029 50.029 2 0.0011715 14123 TMT1-5 144.38 68.341 917.84 1623.6 1077.5 895.01 1417.3 1300.6 869 1601 1127 902 1437 1258 2 2 2 2 2 2 166400 5185 1843;1844 5142 8292 10836;10837 10836 2 EVGTSYGCYFVPAFSGLYAPYWEPSAR Unmodified 3073.3956 0.39564465 991;1775 P32189-1;P32189-4;P32189-2;P32189;Q14409;Q14410 GK;GK3P;GK2 Glycerol kinase;Putative glycerol kinase 3;Glycerol kinase 2 no no 0 0 0 0 0 8 0 2 87.427 87.427 3;4 6.6184E-08 28162 TMT1-7 67.31 58.342 15.899 37.949 20.773 15.136 29.155 14.092 15 37 22 15 29 14 1 2 2 1 2 2 6471.9 5186 991;1775 5143 8293;8294 10838;10839 10838 2 EVGVYEALK Unmodified 1006.5335 0.53351176 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 5 0 1 54.031 54.031 2 0.0044353 15601 TMT1-4 99.442 47.446 153.96 157.51 140.44 139.72 146.09 188.78 145 160 145 138 152 181 1 1 1 1 1 1 9318.9 5187 1074 5144 8295 10840 10840 1 EVGVYEALKDDSWLK Unmodified 1750.8778 0.87776618 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 1 6 0 2 69.173 69.173 3;4 7.6898E-18 21703 TMT1-5 152.88 115.78 711.11 1022.8 805.05 751.28 740.47 1038.5 672 1019 835 744 775 994 3 3 3 3 3 3 119840 5188 1074 5145 8296;8297 10841;10842;10843 10843 3 EVHELYK Unmodified 916.46543 0.46543219 626 P10155;P10155-3;P10155-5;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 4 0 1 36.828 36.828 3 0.00055369 9065 TMT1-3 89.55 28.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5189 626 5146 8298 10844 10844 1 EVHEQLLSTEQVSDQK Unmodified 1868.9116 0.91158551 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 3.5 0.5 1 1 44.739 44.739 3;4 8.175E-22 13249 TMT1-2 167.18 140.81 152.96 263.75 217.66 206.31 196.13 195.88 145 261 225 204 203 189 2 2 2 2 2 2 38441 5190 1684 5147 8299;8300 10845;10846 10845 2 EVHLAQLTAATLTK Unmodified 1494.8406 0.84059282 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 8 0 1 57.434 57.434 3 0.00033762 16540 TMT1-7 59.68 39.573 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5191 2447 5148 8301 10847 10847 1 EVIAVSCGPAQCQETIR Unmodified 1916.9084 0.90843116 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 4 0 1 48.819 48.819 3 0.0018594 13807 TMT1-3 59.27 45.856 295.41 271.63 253.71 220.58 311.17 238.43 278 278 260 221 315 232 1 1 1 1 1 1 13582 5192 1055 5149 8302 10848 10848 1 EVIELPLTNPELFQR Unmodified 1796.9672 0.96724989 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 5 0 1 76.55 76.55 3 4.7415E-09 24370 TMT1-4 116.58 81.372 54.177 49.782 49.604 52.031 40.159 101.19 51 51 51 51 44 96 2 2 2 2 2 2 19896 5193 1437 5150 8303 10849;10850 10849 2 EVIFSVEDGSVK Unmodified 1307.6609 0.66089712 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 5 0 1 61.356 61.356 3 0.00051429 18438 TMT1-4 84.605 61.964 30.325 74.458 69.962 74.577 55.429 52.784 29 73 72 73 58 51 1 1 1 1 1 1 4375.1 5194 374 5151 8304 10851 10851 1 EVILPER Unmodified 854.48617 0.48616764 559 P08236;P08236-2;P08236-3 GUSB Beta-glucuronidase yes no 0 0 0 0 0 3 0 1 44.592 44.592 2 0.046598 13127 TMT1-2 83.265 18.227 68.852 86.643 76.712 96.591 83.975 75.422 65 87 80 94 87 73 1 1 1 1 1 1 10606 5195 559 5152 8305 10852 10852 1 EVIQEWNLTNIK Unmodified 1485.7827 0.78274359 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.4 2.24 1 2 2 68.051 68.051 3;4 5.4731E-09 21243 TMT1-5 138.24 99.276 1407.3 1882.3 2085.8 1441.9 1860.7 1729.3 1332 1891 2098 1465 1899 1672 7 7 7 7 7 7 403760 5196 3010 5153 8306;8307;8308;8309;8310 10853;10854;10855;10856;10857;10858;10859 10855 7 EVIQEWNLTNIKR Unmodified 1641.8839 0.88385462 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7.5 0.5 1 1 59.162 59.162 3 2.8267E-11 17194 TMT1-7 142.85 106.55 535.46 929.79 649.61 669.57 521.64 1123.6 507 918 682 657 565 1068 2 2 2 2 2 2 94821 5197 3010 5154 8311;8312 10860;10861 10861 2 EVIRNDGVLLLQALTR Unmodified 1809.0472 0.047231549 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 1 8 0 1 71.6 71.6 3 6.4519E-05 22073 TMT1-7 79.805 58.247 30.685 44.158 35.206 21.139 42.972 60.602 29 44 36 22 44 58 1 1 1 1 1 1 7265.6 5198 237 5155 8313 10862 10862 1 EVISHIGK Unmodified 881.49707 0.49706667 2833 Q9P2W9 STX18 Syntaxin-18 yes yes 0 0 0 0 0 6 0 1 39.091 39.091 3 0.00128 9822 TMT1-5 72.485 35.464 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5199 2833 5156 8314 10863 10863 1 EVITNSITQPTLHSFDAAQSR Unmodified 2314.1553 0.15533803 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 0 7 1 1 1 55.29 55.29 3 3.5953E-24 16212 TMT1-5 136.48 119.12 84.987 85.653 70.842 57.835 71.098 75.789 80 87 73 58 73 73 2 2 2 2 2 2 22441 5200 2737 5157 8315;8316 10864;10865 10864 2 EVKGDLENAFLNLVQCIQNKPLYFADR Unmodified 3193.623 0.62301883 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 2 9 0 1 90.218 90.218 4 0.00013488 27520 TMT1-8 50.144 30.407 15.688 29.065 43.836 43.75 33.812 53.401 15 29 44 43 36 51 1 1 1 1 1 1 5611.4 5201 534 5158 8317 10866 10866 1 EVLAELEALER Unmodified 1270.6769 0.67688153 1908 Q16822;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 3 0 2 73.717 73.717 2;3 6.6983E-05 24504 TMT1-2 91.549 51.632 16.05 0 7.4931 0 7.0727 7.2602 15 0 7 0 7 7 1 0 1 0 1 1 2859.3 5202 1908 5159 8318;8319 10867;10868 10868 2 EVLASDLVVK Unmodified 1071.6176 0.61757574 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 5 0 1 59.451 59.451 2 0.00019683 17675 TMT1-4 129.38 29.58 145.71 246.64 188.67 176.55 243.02 210.53 138 244 196 176 247 204 1 1 1 1 1 1 26381 5203 1702 5160 8320 10869 10869 1 EVLDASK Unmodified 760.39668 0.39668393 1272 P52630-4;P52630 STAT2 Signal transducer and activator of transcription 2 yes no 0 0 0 0 0 6 0 1 47.637 47.637 2 0.0069849 13213 TMT1-5 78.496 21.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5204 1272 5161 8321 10870 10870 1 EVLDQVCYR Unmodified 1180.5547 0.55465791 1860 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 0 3 0 1 48.16 48.16 2 0.0012867 14521 TMT1-2 121.64 104.54 92.346 108.46 77.032 57.357 76.874 121.46 87 109 80 58 80 116 1 1 1 1 1 1 14098 5205 1860 5162 8322 10871 10871 1 EVLDQVER Unmodified 986.50327 0.50327426 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 2 0 1 43.067 43.067 2 0.0014229 12229 TMT1-1 142.04 79.385 415.56 577.94 540.14 359.82 542.73 588.94 393 578 548 368 554 567 2 2 2 2 2 2 106720 5206 673 5163 8323 10872;10873 10873 2 EVLEGLDYLHR Unmodified 1342.6881 0.68811492 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 4 0 1 57.837 57.837 3 0.00033047 17327 TMT1-3 96.756 72.684 37.864 65.387 72.99 42.243 79.694 59.554 36 65 73 44 80 58 1 1 1 1 1 1 16105 5207 2853 5164 8324 10874 10874 1 EVLEQVER Unmodified 1000.5189 0.51892433 549;505 P06241-3;P06241-2;P06241;P07947 FYN;YES1 Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes no no 0 0 0 0 0 2 0 1 43.353 43.353 2 0.0062546 12330 TMT1-1 107.69 5.972 138.78 149.47 173.54 113.69 146.48 212.22 131 152 174 116 152 203 1 1 1 1 1 1 43605 5208 505;549 5165 8325 10875 10875 1 EVLHELYK Unmodified 1029.5495 0.54949617 829 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 0 0 0 0 5 0 1 47.51 47.51 3 0.0054177 13063 TMT1-4 83.265 42.236 115.23 175 141.72 91.727 136.53 104.84 109 174 145 94 138 102 1 1 1 1 1 1 10084 5209 829 5166 8326 10876 10876 1 EVLHGNQR Unmodified 951.48863 0.48862725 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 0 3.5 0.5 1 1 21.35 21.35 3 0.0024705 3942 TMT1-2 96.19 70.019 23.101 31.518 58.137 10.037 39.566 22.323 22 32 56 10 39 22 2 2 2 1 2 2 7623.8 5210 1457 5167 8327;8328 10877;10878 10877 2 EVLHSYLR Unmodified 1015.5451 0.5450795 1639 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 0 0 6 0 1 39.527 39.527 3 0.0036847 10002 TMT1-5 89.698 37.844 53.892 80.288 71.664 50.122 71.746 67.243 51 80 73 51 73 65 1 1 1 1 1 1 7104.8 5211 1639 5168 8329 10879 10879 1 EVLIETAK Unmodified 901.51205 0.51204804 1672 Q13126-4;Q13126;Q13126-3;Q13126-2;Q13126-7;Q13126-6;Q13126-5 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 0 5 0 1 49.888 49.888 2 0.001058 13960 TMT1-4 92.439 27.872 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5212 1672 5169 8330 10880 10880 1 EVLLEVK Unmodified 828.49567 0.49566969 1740 Q13884;Q13884-2;Q13425-2;Q13425 SNTB1;SNTB2 Beta-1-syntrophin;Beta-2-syntrophin yes no 0 0 0 0 0 5 0 1 56.279 56.279 2 0.0094733 16425 TMT1-4 112.17 23.229 61.155 94.194 101.59 63.274 91.26 121.05 58 94 102 65 94 116 1 1 1 1 1 1 8387.1 5213 1740 5170 8331 10881 10881 1 EVLLEVQK Unmodified 956.55425 0.5542472 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 5 0 1 55.657 55.657 3 0.012881 16236 TMT1-4 69.954 17.472 114.88 215.02 167.59 161.58 176.22 165.53 109 212 174 160 181 160 1 1 1 1 1 1 17227 5214 2926 5171 8332 10882 10882 1 EVLLPEVGAK Unmodified 1053.607 0.60701105 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 5 0 1 59.054 59.054 2 0.0092406 17545 TMT1-4 85.377 33.65 54.132 49.657 57.225 51.147 63.03 76.019 51 51 58 51 65 73 1 1 1 1 1 1 5090.6 5215 1736 5172 8333 10883 10883 1 EVLLTGIQTQGAK Unmodified 1356.7613 0.76127986 31 CON__Q28107 yes yes 0 0 0 0 0 6.5 0.5 1 1 54.71 54.71 2;3 1.723E-45 15927 TMT1-5 188.91 0 129.77 212.57 190.49 159.15 232.57 264.13 123 211 195 160 238 254 1 1 1 1 1 1 27596 + 5216 31 5173 8334;8335 10884;10885 10884 2 EVLQALEELAVNYDQK Unmodified 1860.9469 0.94690838 998 P33176;O60282;Q12840;O60282-2 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 5 0 1 89.967 89.967 3 8.9641E-07 29584 TMT1-4 97.904 69.272 0 30.632 13.375 22.836 21.963 0 0 29 15 22 22 0 0 1 1 1 1 0 2506.4 5217 998 5174 8336 10886 10886 1 EVLSEPWR Unmodified 1014.5134 0.51344502 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 4 0 1 51.729 51.729 2 0.028765 14970 TMT1-3 82.671 29.344 170.37 117.36 121.03 93.292 118.92 158.64 160 123 123 94 123 152 1 1 1 1 1 1 22180 5218 1219 5175 8337 10887 10887 1 EVLSWQVPLLFQGLYQR Unmodified 2075.1204 0.12039649 2780 Q9NXL6;Q9NXL6-2 SIDT1 SID1 transmembrane family member 1 yes no 0 0 0 0 0 9 0 1 90.755 90.755 3 2.3511E-08 27692 TMT1-8 84.842 58.113 16.02 14.88 0 31.291 21.575 0 15 15 0 29 22 0 1 1 0 1 1 0 4434.6 5219 2780 5176 8338 10888 10888 1 EVMILITGAHK Unmodified 1210.6744 0.67437911 2254 Q8TDQ7-3;Q8TDQ7-2;Q8TDQ7;Q8TDQ7-5 GNPDA2 Glucosamine-6-phosphate isomerase 2 no no 0 0 0 0 0 8 0 1 58.484 58.484 3 0.0068713 16944 TMT1-7 65.179 43.731 76.918 147.21 112.42 86.843 82.298 137.3 73 145 116 87 87 131 1 1 1 1 1 1 10526 5220 2254 5177 8339 10889 10889 1 EVMQEVAQLSQFDEELYK Unmodified 2185.0249 0.024900707 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 4.33 0.471 2 1 82.434 82.434 3;4 0.00070592 26978 TMT1-3 60.564 41.493 61.457 88.56 55.532 60.226 47.148 99.925 58 88 59 58 51 95 3 3 3 2 3 3 12965 5221 1186 5178 8340;8341;8342 10890;10891;10892 10891 3 EVNEVSQNFQTTK Unmodified 1522.7264 0.72635092 2589 Q9BZQ8 FAM129A Protein Niban yes yes 0 0 0 0 0 5 0 1 46.99 46.99 3 0.005458 12843 TMT1-4 62.377 42.271 53.786 103.74 69.581 65.311 84.35 106.33 51 102 73 65 87 102 1 1 1 1 1 1 7164.9 5222 2589 5179 8343 10893 10893 1 EVNLAVQNAK Unmodified 1084.5877 0.58767259 1171 P49189;P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 6 0 1 45.71 45.71 3 0.00013024 12449 TMT1-5 82.171 32.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5223 1171 5180 8344 10894 10894 1 EVNLDFHTK Unmodified 1101.5455 0.54547343 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 0 5.5 0.5 1 1 47.339 47.339 3 0.00038913 13039 TMT1-4 108.35 26.723 729.2 983.36 864.11 618.25 827.55 934.72 689 984 882 627 849 899 2 2 2 2 2 2 71257 5224 2737 5181 8345;8346 10895;10896 10895 2 EVNYIDK Unmodified 879.4338 0.43379771 1620 Q08257;Q08257-3;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 4 0 1 44.876 44.876 2 0.033849 12248 TMT1-3 88.948 30.37 242.1 401.6 267.98 338.29 458.05 372.82 229 397 285 332 465 362 1 1 1 1 1 1 14359 5225 1620 5182 8347 10897 10897 1 EVPAVPETLK Unmodified 1081.6019 0.60192568 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 0 5 0 2 53.917 53.917 2;3 0.0015878 15611 TMT1-4 86.898 49.342 300.29 261.27 344.83 325.86 294.28 284.75 283 270 348 322 305 275 2 2 2 2 2 2 52534 5226 775 5183 8348;8349 10898;10899 10899 2 EVPAVPETLKK Unmodified 1209.6969 0.69688869 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 1 6 0 1 49.078 49.078 3 0.017509 13761 TMT1-5 61.11 33.629 431.2 576.46 438.28 363.35 503.43 449.34 407 576 454 365 512 435 1 1 1 1 1 1 37388 5227 775 5184 8350 10900 10900 1 EVPDACFNHNGEHR Unmodified 1680.7063 0.70630096 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 3 0 1 30.885 30.885 4 2.5984E-06 7783 TMT1-2 102.73 87.809 123.59 174.87 179.39 144.02 200.85 172.29 117 175 182 145 204 167 2 2 2 2 2 2 29527 + 5228 32;554 5185 8351 10901;10902 10902 2 EVPEEYSER Unmodified 1136.4986 0.49858282 1111 P43250-3;P43250;P43250-2 GRK6 G protein-coupled receptor kinase 6 yes no 0 0 0 0 0 2 0 1 36.795 36.795 2 2.0165E-08 9695 TMT1-1 143.7 91.301 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5229 1111 5186 8352 10903 10903 1 EVPFADLSNMEIGMK Unmodified 1679.7899 0.78987915 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 6 0 1 76.038 76.038 3 4.0797E-15 24394 TMT1-5 136.14 118.04 153.29 268.98 157.94 131.09 142.49 305.07 145 265 167 131 152 290 1 1 1 1 1 1 47901 5230 1700 5187 8353 10904 10904 1 EVPFSNENPR Unmodified 1187.5571 0.55710075 2320 Q92835;Q92835-2 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 3 0 1 41.871 41.871 2 0.00015363 12053 TMT1-2 133.75 107.71 46.551 65.085 55.974 59.313 39.604 107.6 44 65 58 58 44 102 1 1 1 1 1 1 8796.7 5231 2320 5188 8354 10905 10905 1 EVPFVVPK Unmodified 913.5273 0.52730417 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 0 7 0 1 59.694 59.694 2 0.022303 17371 TMT1-6 87.323 60.068 100.13 92.506 45.392 83.848 47.161 67.944 94 94 51 80 51 65 1 1 1 1 1 1 7859.9 5232 2194 5189 8355 10906 10906 1 EVPGLSGSEEPGEVPQTR Unmodified 1866.8959 0.89593544 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 2.5 0.5 1 1 50.362 50.362 3 2.4744E-10 15064 TMT1-1 109.87 93.69 99.699 115.06 98.032 110.58 144.3 97.152 94 116 102 109 146 95 3 3 3 3 3 3 46906 5233 2066 5190 8356;8357 10907;10908;10909 10907 3 EVPLSALTNILSAQLISHWK Unmodified 2219.2314 0.2314035 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 0 9 0 2 89.814 89.814 3;4 4.7031E-25 27414 TMT1-8 132.62 101.66 46.635 66.399 40.726 59.783 62.926 67.494 44 66 44 58 65 65 2 2 2 2 2 2 34901 5234 487 5191 8358;8359 10910;10911 10911 2 EVQDLAFLDVVSK Unmodified 1461.7715 0.7715102 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 6 0 1 76.188 76.188 3 0.0014792 24437 TMT1-5 73.022 45.815 37.983 50.607 65.553 34.787 34.774 37.384 36 51 65 36 36 36 1 1 1 1 1 1 9481.1 5235 1264 5192 8360 10912 10912 1 EVQDLFEAQGNDR Unmodified 1519.6903 0.69029976 2642 Q9H3U1;Q9H3U1-2;Q9H3U1-3 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 3 0 1 56.286 56.286 2 0.036918 17775 TMT1-2 59.898 35.107 23.195 28.542 44.856 20.712 35.128 45.902 22 29 44 22 36 44 1 1 1 1 1 1 8059.9 5236 2642 5193 8361 10913 10913 1 EVQEFYK Unmodified 941.44945 0.44944778 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 0 4.67 0.471 1 2 48.167 48.167 2;3 0.0012532 13597 TMT1-3 148.38 87.594 1578 2312.9 2429.7 1526.7 2888.7 2261.7 1495 2312 2444 1579 2903 2199 4 4 4 4 4 4 259390 5237 835 5194 8362;8363;8364 10914;10915;10916;10917 10915 4 EVQEFYKDTYNK Unmodified 1562.7253 0.72528829 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 1 5.5 0.5 1 1 49.661 49.661 3 8.3727E-09 13976 TMT1-5 140 116.07 765.38 1032.9 873.06 783.69 835.98 1138.1 723 1033 900 779 871 1090 3 3 3 3 3 3 70997 5238 835 5195 8365;8366 10918;10919;10920 10920 3 EVQGFESATFLGYFK Unmodified 1721.8301 0.83008771 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 6.91 1.98 1 6 3 1 79.225 79.225 2;3;4 2.8052E-17 24902 TMT1-7 146 131.32 2889.8 2864.8 2951.9 2804.2 2987.4 4258.7 2723 2922 3016 2778 3119 4075 23 23 23 23 23 23 656040 + 5239 506 5196 8367;8368;8369;8370;8371;8372;8373;8374;8375;8376;8377 10921;10922;10923;10924;10925;10926;10927;10928;10929;10930;10931;10932;10933;10934;10935;10936;10937;10938;10939;10940;10941;10942;10943 10939 23 EVQISTEK Unmodified 932.48148 0.48147619 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 4 0 1 41.648 41.648 2 0.00019399 10976 TMT1-3 120.12 41.003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5240 2064 5197 8378 10944 10944 1 EVQLEELEAAR Unmodified 1285.6514 0.65139506 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 0 2 0 1 54.729 54.729 2 1.3453E-06 16728 TMT1-1 140.09 81.172 100.84 107.63 92.234 56.292 85.315 90.308 95 109 94 58 87 87 2 2 2 2 2 2 15220 5241 1242 5198 8379 10945;10946 10945 2 EVQQLQGK Unmodified 928.49779 0.49779495 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 5 0 1 38.557 38.557 2 0.0053824 9493 TMT1-4 118.32 71.257 77.451 62.354 94.716 64.22 62.722 67.5 73 65 94 65 65 65 1 1 1 1 1 1 7269.3 5242 2828 5199 8380 10947 10947 1 EVQTAVR Unmodified 801.43447 0.43446642 2168 Q8N257 HIST3H2BB Histone H2B type 3-B yes yes 0 0 0 0 0 3 0 1 28.591 28.591 2 0.0079109 6753 TMT1-2 122.18 36.817 77.341 109.54 73.185 143.96 133.36 127.31 73 109 80 138 138 123 1 1 1 1 1 1 15401 5243 2168 5200 8381 10948 10948 1 EVQTNDLK Unmodified 945.47673 0.47672516 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 3 1 1 1 39.768 39.768 2 0.0041893 10093 TMT1-3 126.82 55.906 286.51 435.56 348.84 366.95 479.5 471.35 271 433 363 363 490 455 2 2 2 2 2 2 43732 5244 1386 5201 8382;8383 10949;10950 10950 2 EVQYLLNK Unmodified 1005.5495 0.54949617 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 6 0 1 56.588 56.588 2 0.003928 16725 TMT1-5 128.69 72.676 115.28 186.99 124.05 132.32 184.36 211.14 109 185 131 131 189 203 1 1 1 1 1 1 17956 5245 3017 5202 8384 10951 10951 1 EVSDGIIAPGYEEEALTILSK Unmodified 2233.1366 0.13655965 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 4.5 0.5 2 2 83.273 83.273 3;4 3.2222E-07 26988 TMT1-4 72.771 57.843 178.03 248.04 165.01 192.19 242.3 210.55 168 247 175 189 247 204 5 5 5 5 5 5 48662 5246 981 5203 8385;8386;8387;8388 10952;10953;10954;10955;10956 10956 5 EVSENEKGK Phospho (STY) 1098.4594 0.45943392 1980 Q5TCQ9;Q5TCQ9-1 MAGI3 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 yes no 0 0 0 1 1 9 0 1 81.794 81.794 2 0.034681 24275 TMT1-8 41.979 6.7553 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5247 1980 5204 8389 10957 10957 7 1 EVSFQSTGESEWK Unmodified 1512.6733 0.67325272 1608 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 54.855 54.855 2 1.049E-13 15918 TMT1-4 131.13 111.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5248 1608 5205 8390 10958 10958 1 EVSGDQIEDMFEQGK Unmodified 1710.7407 0.74068036 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 4 0 1 66.698 66.698 3 0.0043253 20905 TMT1-3 58.671 42.364 38.187 66.285 17.946 37.903 19.973 37.806 36 65 22 36 22 36 1 1 1 1 1 1 9616 5249 288 5206 8391 10959 10959 1 EVSQPDWTPPPEVTLVLTK Unmodified 2135.115 0.11503634 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 6 0 2 77.981 77.981 3;4 3.6205E-10 25140 TMT1-5 100.67 75.878 192.74 238.59 225.94 220.01 254.9 263.49 182 240 232 218 262 254 3 3 3 3 3 3 63080 5250 686 5207 8392;8393 10960;10961;10962 10961 3 EVSSATNALR Unmodified 1046.5356 0.53563702 580 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 0 0 0 4 0 1 36.283 36.283 2 3.427E-05 8840 TMT1-3 149.27 66.102 84.792 101.3 90.3 110.07 196.16 110.6 80 102 94 109 196 109 1 1 1 1 1 1 14215 5251 580 5208 8394 10963 10963 1 EVSTYIK Unmodified 838.44363 0.44363412 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 0 3 2 1 1 45.748 45.748 2 0.0022353 12141 TMT1-4 143 56.138 1283.3 2387.5 1769.9 1332.4 2118.3 2052.4 1217 2353 1829 1352 2151 1982 3 3 3 3 3 3 239850 5252 1490 5209 8395;8396 10964;10965;10966 10965 3 EVSTYIKK Unmodified 966.5386 0.53859714 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 7 0 1 43.093 43.093 3 0.0072746 10773 TMT1-6 86.67 49.112 384.21 664.49 326.32 310.21 313.03 612.55 363 654 353 307 333 583 1 1 1 1 1 1 45115 5253 1490 5210 8397 10967 10967 1 EVSYGEGK Unmodified 867.39741 0.39741221 1385 P61225 RAP2B Ras-related protein Rap-2b yes yes 0 0 0 0 0 3.5 0.5 1 1 36.836 36.836 2 0.010262 9053 TMT1-3 99.442 56.195 161.06 187.17 183.18 183.9 160.28 173.45 152 189 188 181 167 167 2 2 2 2 2 2 19242 5254 1385 5211 8398;8399 10968;10969 10969 2 EVTAIETK Unmodified 889.47566 0.47566253 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 4 0 1 43.042 43.042 2 0.004794 11519 TMT1-3 122.52 45.234 91.668 176.73 133.06 116.48 126.23 158.43 87 174 138 116 131 152 1 1 1 1 1 1 12168 5255 1790 5212 8400 10970 10970 1 EVTDEIVK Unmodified 931.48623 0.48622722 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 2.33 0.471 2 1 48.101 48.101 2 0.00094585 14313 TMT1-2 146.54 62.299 277.29 364.05 335.96 219.09 420.04 329.13 262 365 341 226 422 320 3 3 3 3 3 3 55450 5256 860 5213 8401;8402;8403 10971;10972;10973 10973 3 EVTDVDSVVGR Unmodified 1174.583 0.58298115 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 2.5 0.5 1 1 47.68 47.68 2 2.2365E-06 14023 TMT1-1 133.23 100.87 53.884 104.01 52.881 75.487 61.141 98.459 51 102 58 73 65 94 1 1 1 1 1 1 12840 5257 2223 5214 8404;8405 10974;10975 10974 2 EVTEPLNLNPAK Unmodified 1323.7034 0.70343063 2228 Q8NFW8;Q8NFW8-2 CMAS N-acylneuraminate cytidylyltransferase yes no 0 0 0 0 0 5 0 1 54.85 54.85 3 0.00024605 15903 TMT1-4 90.697 50.912 115.49 168.17 103.37 87.526 74.68 144.98 109 167 109 87 80 138 1 1 1 1 1 1 8443.3 5258 2228 5215 8406 10976 10976 1 EVTFLEASR Unmodified 1050.5346 0.53457439 1369;809 P61018;P61018-2;P20338 RAB4B;RAB4A Ras-related protein Rab-4B;Ras-related protein Rab-4A no no 0 0 0 0 0 4 0 1 51.636 51.636 2 0.0087548 14948 TMT1-3 90.64 40.616 46.091 95.106 107.8 94.194 112.87 120.44 44 94 109 94 116 116 1 1 1 1 1 1 11206 5259 1369;809 5216 8407 10977 10977 1 EVTFVPGLYK Unmodified 1151.6227 0.62266112 1574 Q02880-2;Q02880;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha yes no 0 0 0 0 0 7 0 1 64.84 64.84 2 0.0056067 19371 TMT1-6 90.629 46.312 84.784 101.28 91.641 79.971 106.71 105.69 80 102 94 80 109 102 1 1 1 1 1 1 11061 5260 1574 5217 8408 10978 10978 1 EVTHDLLYEGYR Unmodified 1493.7151 0.71505795 2288 Q8WYJ6 SEPT1 Septin-1 yes yes 0 0 0 0 0 3 0 1 47.974 47.974 3 1.4471E-09 14430 TMT1-2 150.06 114.32 123.92 174.7 124.7 133.24 133.6 134.77 117 174 131 131 138 130 2 2 2 2 2 2 40350 5261 2288 5218 8409 10979;10980 10979 2 EVTLHFLR Unmodified 1013.5658 0.56581494 1013 P35236;P35236-2;P35236-3 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 yes no 0 0 0 0 0 7 0 1 49.515 49.515 3 0.0010787 13300 TMT1-6 117.04 52.2 54.064 64.579 55.98 59.017 55.339 76.239 51 65 58 58 58 73 1 1 1 1 1 1 7417.2 5262 1013 5219 8410 10981 10981 1 EVTLNLYDTAGQEDYDR Unmodified 2000.8963 0.89632937 2679 Q9HBH0;Q9HBH0-2 RHOF Rho-related GTP-binding protein RhoF yes no 0 0 0 0 0 2 0 1 61.291 61.291 3 0.0069686 19324 TMT1-1 51.348 40.086 38.238 35.129 35.699 21.386 28.318 30.106 36 36 36 22 29 29 1 1 1 1 1 1 5612.4 5263 2679 5220 8411 10982 10982 1 EVTPEGLQMVK Unmodified 1229.6326 0.63257388 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 5 0 1 55.82 55.82 3 0.0033398 16289 TMT1-4 73.781 30.269 130.41 143.1 142.49 115.81 131.98 205.17 123 145 145 116 138 196 1 1 1 1 1 1 9547.9 5264 843 5221 8412 10983 10983 1 EVTWEVLEGEVEK Unmodified 1545.7563 0.75625407 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 4 0 1 70.873 70.873 3 4.0129E-06 22432 TMT1-3 110.92 80.789 75.924 139.95 105.28 87.101 91.227 90.139 72 138 109 87 94 87 2 2 2 2 2 2 18045 5265 498 5222 8413 10984;10985 10984 2 EVVDGLEK Unmodified 887.46001 0.46001246 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 0 3 0 1 48.046 48.046 3 0.0055563 14450 TMT1-2 82.75 25.47 123 151.45 118.47 110.24 97.477 120.87 116 152 123 109 102 116 1 1 1 1 1 1 13959 5266 837 5223 8414 10986 10986 1 EVVDYIIFGTVIQEVK Unmodified 1851.003 0.002966698 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 6.5 0.5 1 1 90.881 90.881 2;3 9.4763E-12 29495 TMT1-6 123.63 95.977 115.56 144.6 112.85 100.74 155.42 213.03 109 145 117 101 160 204 3 3 3 3 3 3 27360 5267 1312 5224 8415;8416 10987;10988;10989 10989 3 EVVEAHVDQK Unmodified 1152.5775 0.57750184 0 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 0 2.5 0.5 1 1 36.051 36.051 3 9.4324E-06 9651 TMT1-2 146.71 111.49 517.19 679.13 505.33 459.11 604.38 579.71 488 679 526 458 617 560 4 4 4 4 4 4 73695 5268 0 5225 8417;8418 10990;10991;10992;10993 10992 4 EVVETPLLHPER Unmodified 1417.7565 0.75652884 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 3 0 1 46.941 46.941 3 0.00011367 14091 TMT1-2 97.69 58.065 130.35 166.68 132.42 140.06 153.4 188.57 123 167 138 138 159 181 2 2 2 2 2 2 30195 5269 1033 5226 8419 10994;10995 10995 2 EVVIFGAASELFTK Unmodified 1509.8079 0.80789571 1032 P35914 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 81.392 81.392 2;3 0.00016398 25924 TMT1-7 72.958 36.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5270 1032 5227 8420;8421 10996;10997 10997 2 EVVIVSATR Unmodified 972.5604 0.56039521 878 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 0 5 0 1 43.79 43.79 2 0.013861 11516 TMT1-4 83.623 32.193 153.31 284.16 141.22 121.82 223.57 240.93 145 279 152 123 227 232 1 1 1 1 1 1 30261 5271 878 5228 8422 10998 10998 1 EVVKPVPITSPAVSK Unmodified 1549.9079 0.9079441 2411 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 yes yes 0 0 0 0 1 8 0 1 51.318 51.318 4 0.00071308 14091 TMT1-7 73.208 61.929 138.78 158.12 165.08 121.8 148.75 135.4 131 160 167 123 152 131 1 1 1 1 1 1 21682 5272 2411 5229 8423 10999 10999 1 EVVQNFAK Unmodified 933.49198 0.4919813 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 5.67 0.471 1 2 46.428 46.428 2;3 0.0020237 12775 TMT1-5 138.9 55.094 716.9 1213.9 931.73 1001.3 994.01 1118.7 679 1201 973 984 1031 1076 3 3 3 3 3 3 640080 5273 1747 5230 8424;8425;8426 11000;11001;11002 11002 3 EVVSLTEACCAEGADPDCYDTR Unmodified 2517.0094 0.0094033514 447 P02774-3;P02774 GC Vitamin D-binding protein yes no 0 0 0 0 0 2 0 1 57.232 57.232 3 0.00014855 17775 TMT1-1 59.324 59.324 7.4147 0 16.193 0 0 0 7 0 15 0 0 0 1 0 1 0 0 0 4875.4 5274 447 5231 8427 11003 11003 1 EVVTSEDGSDCPEAMDLGTLSGIGTLDGFR Unmodified 3127.3962 0.39617452 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 3.9 0.7 3 5 2 81.437 81.437 3;4;5 2.4865E-26 26584 TMT1-3 108.05 96.268 106.83 208.77 139.63 176.25 195.15 220.42 101 204 146 169 200 212 9 9 9 8 10 11 183670 5275 437 5232 8428;8429;8430;8431;8432;8433;8434;8435;8436;8437 11004;11005;11006;11007;11008;11009;11010;11011;11012;11013;11014;11015 11011 12 EVVTSEDGSDCPEAMDLGTLSGIGTLDGFR Oxidation (M) 3143.3911 0.39108914 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 1 0 0 4 0 1 76.599 76.599 3 3.0294E-08 24722 TMT1-3 69.439 67.485 7.4469 3.6252 7.6963 15.817 6.3454 7.2809 7 4 8 15 7 7 1 1 1 1 1 1 7005.2 5276 437 5232 8438 11016 11016 48 1 EVWDYVFFK Unmodified 1231.5914 0.59136099 2829 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7.5 0.5 1 1 80.98 80.98 3 0.0087248 25680 TMT1-6 67.993 47.329 84.725 101.11 101.73 48.074 85.399 98.833 80 102 102 51 87 95 2 2 2 2 2 2 8073.2 5277 2829 5233 8439;8440 11017;11018 11017 2 EVWEELDGLDPNR Unmodified 1570.7264 0.72635092 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 2.5 0.5 1 1 70.114 70.114 2;3 0.0042034 23091 TMT1-2 47.242 33.497 7.4331 15.459 0 16.395 0 7.462 7 15 0 15 0 7 1 1 0 1 0 1 2184.1 5278 1572 5234 8441;8442 11019;11020 11020 2 EVWEETDGLDPNDFDPK Unmodified 2004.8589 0.85888124 1511 P80303-2;P80303 NUCB2 Nucleobindin-2;Nesfatin-1 yes no 0 0 0 0 0 3 0 1 70.249 70.249 3 1.9E-07 23209 TMT1-2 70.235 65.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5279 1511 5235 8443 11021 11021 1 EVWFFGLQYQDTK Unmodified 1659.7933 0.79330827 894 P26038 MSN Moesin yes yes 0 0 0 0 0 7.67 0.471 1 2 78.425 78.425 3;4 1.1346E-05 24799 TMT1-7 103.97 83.594 1070.6 1638.3 1360.8 1081.7 1400.3 1365 1013 1629 1398 1088 1431 1318 7 7 7 7 7 7 177140 5280 894 5236 8444;8445;8446 11022;11023;11024;11025;11026;11027;11028 11025 7 EVWFFGLQYVDSK Unmodified 1616.7875 0.78749461 1015 P35241;P35241-5 RDX Radixin yes no 0 0 0 0 0 8 0 1 84.203 84.203 2 0.00017653 26980 TMT1-7 78.964 59.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5281 1015 5237 8447 11029 11029 1 EVWYFGLHYVDNK Unmodified 1668.7936 0.79364262 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 7.5 0.5 1 1 66.655 66.655 3;4 3.9452E-05 20127 TMT1-7 100.22 90.473 185.67 231.69 157.63 184.62 202.88 241.52 175 232 167 181 210 232 2 2 2 2 2 2 23841 5282 720 5238 8448;8449 11030;11031 11031 2 EVYAAAAEVLGLILR Unmodified 1586.9032 0.90319307 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 101.87 101.87 3 0.0035943 31775 TMT1-8 54.09 32.404 0 7.3287 7.1343 0 0 7.462 0 7 7 0 0 7 0 1 1 0 0 1 891.58 5283 1507 5239 8450 11032 11032 1 EVYELLDSPGK Unmodified 1248.6238 0.62378333 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 4 0 1 62.731 62.731 2 3.4276E-06 19297 TMT1-3 129.16 90.138 68.996 63.3 72.243 58.312 41.262 60.651 65 65 73 58 44 58 1 1 1 1 1 1 8183.8 5284 843 5240 8451 11033 11033 1 EVYFAER Unmodified 912.43413 0.43413207 1215 P50238 CRIP1 Cysteine-rich protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 43.771 43.771 2 0.00027722 12790 TMT1-2 153.73 99.201 646.21 771.59 564.51 667.41 674.07 1043.6 609 775 595 653 708 997 3 3 3 3 3 3 132500 5285 1215 5241 8452;8453 11034;11035;11036 11034 3 EVYPEAR Unmodified 862.41848 0.418482 66 O00422;O00422-2 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 0 2 0 1 33.562 33.562 2 0.018963 8386 TMT1-1 98.418 26.703 46.583 57.621 56.804 50.738 86.083 75.362 44 58 58 51 87 73 1 1 1 1 1 1 6212.8 5286 66 5242 8454 11037 11037 1 EVYQQQQYGSGGR Unmodified 1498.6801 0.68006943 2487 Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 0 3 0 1 33.838 33.838 3 3.3247E-08 8855 TMT1-2 116.98 102.56 46.594 73.839 41.361 35.516 72.674 59.754 44 73 44 36 73 58 1 1 1 1 1 1 18029 5287 2487 5243 8455 11038 11038 1 EWAHATIIPK Unmodified 1164.6291 0.62914348 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 7 0 1 49.907 49.907 3 0.00011997 13485 TMT1-6 83 72.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5288 956 5244 8456 11039 11039 1 EWFLQAAK Unmodified 991.51272 0.51271674 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 8 0 1 62.818 62.818 2 0.0052491 18728 TMT1-7 119.27 72.208 267.96 817.49 617.5 478.91 648.96 656.26 257 795 637 483 663 633 2 2 2 2 2 2 100670 5289 516 5245 8457 11040;11041 11041 2 EWFSETFQK Unmodified 1200.5451 0.54513908 434 P02654 APOC1 Apolipoprotein C-I;Truncated apolipoprotein C-I yes yes 0 0 0 0 0 7 0 1 64.661 64.661 3 0.011441 19307 TMT1-6 64.841 40.049 153.03 238.05 227.51 141.27 194.52 238.56 145 237 230 145 200 229 1 1 1 1 1 1 10631 5290 434 5246 8458 11042 11042 1 EWGSGSDTLR Unmodified 1106.4993 0.49925152 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 3.5 0.5 1 1 42.368 42.368 2 6.7582E-21 11204 TMT1-3 201.21 185.25 293.26 257.71 267.75 240 338.28 397.56 276 265 273 240 347 382 2 2 2 2 2 2 55042 5291 748 5247 8459;8460 11043;11044 11044 2 EWHHFLVVNMK Unmodified 1438.718 0.71797526 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 9 0 1 53.476 53.476 4 0.0017319 13149 TMT1-8 69.979 51.877 77.301 85.68 100.21 103.85 88.588 144.58 73 87 102 102 94 138 1 1 1 1 1 1 9930.5 5292 954 5248 8461 11045 11045 1 EWIECAHGIGYTR Unmodified 1590.7249 0.72491113 211 O43920 NDUFS5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 yes yes 0 0 0 0 0 5 0 1 49.059 49.059 3 8.5387E-05 13643 TMT1-4 94.09 82.811 108.54 107.65 60.384 65.993 77.283 97.999 102 109 65 65 80 94 1 1 1 1 1 1 10367 5293 211 5249 8462 11046 11046 1 EWIQNTLGVNVEHK Unmodified 1665.8475 0.84746911 38 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 0 7 0 1 58.132 58.132 3 1.6387E-10 16749 TMT1-6 123.76 89.976 77.51 78.707 70.973 65.095 91.433 113.58 73 80 73 65 94 109 1 1 1 1 1 1 13452 5294 38 5250 8463 11047 11047 1 EWQAAWLLK Unmodified 1143.6077 0.60767975 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 8 0 1 72.382 72.382 2 0.017212 22423 TMT1-7 79.148 31.545 69.337 41.582 33.393 60.936 24.887 77.108 65 44 36 58 29 73 1 1 1 1 1 1 4528.7 5295 2982 5251 8464 11048 11048 1 EWQELDDAEK Unmodified 1261.5463 0.54626129 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 2.5 0.5 1 1 54.043 54.043 3 1.6157E-05 16720 TMT1-2 103.21 63.948 92.141 107.89 111.9 149.88 102.98 120.72 87 109 116 145 109 116 2 2 2 2 2 2 10953 5296 1683 5252 8465;8466 11049;11050;11051 11051 3 EWSGLLEELAR Unmodified 1301.6616 0.66156582 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 5.5 0.5 1 1 77.186 77.186 2;3 2.3903E-05 24782 TMT1-5 117.71 74.264 91.844 168.59 110.35 102.95 104.37 143.06 87 166 116 102 109 137 2 2 2 2 2 2 32737 5297 1559 5253 8467;8468 11052;11053 11053 2 EWTDGLFTHVLR Unmodified 1472.7412 0.74121312 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 65.376 65.376 3 8.3103E-08 19568 TMT1-6 123.2 93.399 54.036 49.391 73.542 49.567 95.319 51.646 51 51 73 51 95 51 1 1 1 1 1 1 11594 5298 1763 5254 8469 11054 11054 1 EWVESMGGK Unmodified 1021.4539 0.45388123 1224 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 0 0 0 6 0 1 52.737 52.737 3 0.00014893 15228 TMT1-5 88.948 66.208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5299 1224 5255 8470 11055 11055 1 EWYGYHFPELVK Unmodified 1566.7507 0.75071518 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 7 0 1 65.018 65.018 3 0.0037477 19444 TMT1-6 66.538 46.156 153.64 226.79 134.55 178.59 190.04 197.12 145 225 145 174 196 190 1 1 1 1 1 1 19974 5300 81 5256 8471 11056 11056 1 EYAESIGAIVVETSAK Unmodified 1665.8461 0.84613171 1733 Q13636 RAB31 Ras-related protein Rab-31 yes yes 0 0 0 0 0 5 0 1 69.428 69.428 3 4.2065E-11 21618 TMT1-4 101.2 81.092 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5301 1733 5257 8472 11057 11057 1 EYAPGETVK Unmodified 992.48148 0.48147619 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 40.231 40.231 2 0.0005463 11430 TMT1-2 134.77 88.75 137.15 311.15 310.51 221.83 122.92 418.63 131 306 314 222 141 396 1 1 1 1 1 1 29040 5302 471 5258 8473 11058 11058 1 EYAQNIWNVEPSDLK Unmodified 1804.8632 0.86317875 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 5.5 0.5 1 1 66.576 66.576 3 3.3695E-05 20535 TMT1-4 88.992 70.16 183.54 283.88 290.41 121.45 235.07 302.43 174 283 290 131 240 290 3 3 3 3 3 3 29829 5303 515 5259 8474;8475 11059;11060;11061 11059 3 EYATEVDVDFVR Unmodified 1441.6725 0.67252444 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 2.5 0.5 1 1 59.565 59.565 2 2.1377E-13 18992 TMT1-2 172.1 138.67 77.589 62.739 71.13 58.788 77.614 97.989 73 65 72 59 80 94 2 2 2 2 2 2 15829 5304 1467;1637 5260 8476;8477 11062;11063 11063 2 EYDPVEAR Unmodified 977.44543 0.44542503 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 2 0 1 37.657 37.657 2 0.0059109 10028 TMT1-1 112.37 71.592 222.7 248.16 232.39 180.28 196.99 236.36 210 251 237 181 204 227 1 1 1 1 1 1 30625 5305 1862 5261 8478 11064 11064 1 EYEAALNSK Unmodified 1023.4873 0.48728985 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 4 0 1 44.158 44.158 2 0.00064515 11939 TMT1-3 132.01 78.132 160.32 352.41 167.31 147.8 270.21 249.2 152 344 181 149 273 241 1 1 1 1 1 1 41887 5306 816 5262 8479 11065 11065 1 EYEATLEECCAK Unmodified 1501.6065 0.60649506 29 CON__P02769 yes yes 0 0 0 0 0 2 0 1 47.796 47.796 3 9.1736E-06 14021 TMT1-1 110.66 96.982 46.275 33.019 129.52 30.38 66.388 36.482 44 36 123 36 66 36 1 1 1 1 1 1 6473.4 + 5307 29 5263 8480 11066 11066 1 EYEELIK Unmodified 922.46476 0.46476349 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 3 0.816 1 1 1 53.482 53.482 2;3 0.0030985 16581 TMT1-2 100.74 52.999 476.55 641.28 514.95 395.85 450.33 611.83 450 641 530 398 468 586 3 3 3 3 3 3 70620 5308 1635 5264 8481;8482;8483 11067;11068;11069 11068 3 EYELLSDELNQK Unmodified 1479.7093 0.70930387 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 3.5 0.5 1 1 63.593 63.593 3 2.1047E-07 19515 TMT1-3 101.6 52.285 92.308 85.692 102.6 48.316 69.72 98.215 87 88 102 51 72 94 2 2 2 2 2 2 10624 5309 998 5265 8484;8485 11070;11071;11072 11072 3 EYEPEMGK Unmodified 981.41135 0.41134771 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 2.5 0.5 1 1 43.101 43.101 2 0.0052491 12469 TMT1-2 119.27 58.515 169.59 217.73 166.94 190.7 256.81 216.53 160 218 175 188 261 210 2 2 2 2 2 2 20396 5310 2344;748 5266 8486;8487 11073;11074 11074 2 EYEPYFK Unmodified 974.43855 0.43854874 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 4.5 0.5 1 1 51.892 51.892 2 0.0083263 14692 TMT1-4 117.17 73.923 322.86 399.25 401.35 325.94 401.23 398.96 305 402 408 327 411 385 2 2 2 2 2 2 47317 5311 666 5267 8488;8489 11075;11076 11076 2 EYFGAFGEIENIELPMDTK Unmodified 2202.0191 0.019087047 120 O14979-3;O14979-2;O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 0 5 0 1 84.271 84.271 4 0.0058279 27255 TMT1-4 46.494 38.54 23.38 29.056 13.381 22.17 57.326 67.654 22 29 15 22 58 65 1 1 1 1 1 1 6631.9 5312 120 5268 8490 11077 11077 1 EYFGGFGEVESIELPMDNK Unmodified 2159.9721 0.97213685 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 5 0 1 79.053 79.053 3 0.00018581 25373 TMT1-4 64.346 55.163 30.986 0 21.989 37.238 42.488 53.154 29 0 22 36 44 51 1 0 1 1 1 1 23986 5313 1748 5269 8491 11078 11078 1 EYFSWEGAFQHVGK Unmodified 1683.7682 0.76815616 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 7.5 0.5 1 1 64.139 64.139 3;4 2.6765E-07 19140 TMT1-7 105.14 92.584 338.21 442.29 310.38 316.65 311.89 423.9 319 442 326 312 326 406 2 2 2 2 2 2 41832 5314 904 5270 8492;8493 11079;11080 11080 2 EYFYTSGK Unmodified 993.44436 0.4443624 682 P13501 CCL5 C-C motif chemokine 5;RANTES(3-68);RANTES(4-68) yes yes 0 0 0 0 0 6 0 1 47.859 47.859 2 0.0030441 13273 TMT1-5 133.55 69.983 696.81 1055.2 836.48 1072.6 877.04 1200.9 659 1049 879 1042 925 1150 2 2 2 2 2 2 92950 5315 682 5271 8494 11081;11082 11081 2 EYGGLDVLVNNAGIAFK Unmodified 1778.9203 0.9202997 735 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 0 0 0 0 7 0 1 78.629 78.629 4 0.00030678 24774 TMT1-6 68.919 55.939 54.105 64.692 49.064 44.094 57.088 45.275 51 65 51 44 58 44 1 1 1 1 1 1 6688.8 5316 735 5272 8495 11083 11083 1 EYGVPFLETSAK Unmodified 1339.666 0.66598249 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 5.5 0.5 1 1 64.631 64.631 3 0.00012781 19809 TMT1-5 72.958 49.732 46.506 64.961 63.584 58.686 48.831 52.973 44 65 65 58 51 51 1 1 1 1 1 1 7103.3 5317 2366 5273 8496;8497 11084;11085 11085 2 EYHPDKNPNAGDK Unmodified 1483.6692 0.66917039 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 1 4 0 1 31.252 31.252 4 0.00027836 6841 TMT1-3 86.944 76.09 68.272 140.07 128.88 92.33 145.19 65.147 65 138 131 94 145 65 1 1 1 1 1 1 8300.5 5318 245 5274 8498 11086 11086 1 EYIEIITSSIK Unmodified 1294.702 0.70203365 2268 Q8WUW1;Q8WUW1-2 BRK1 Protein BRICK1 yes no 0 0 0 0 0 7 0 1 73.484 73.484 3 9.6368E-05 22845 TMT1-6 103.22 43.679 92.14 146.74 79.13 128.74 110.22 151.42 87 145 87 124 116 145 2 2 2 2 2 2 23310 5319 2268 5275 8499 11087;11088 11088 2 EYIEIITSSIKK Unmodified 1422.797 0.79699667 2268 Q8WUW1;Q8WUW1-2 BRK1 Protein BRICK1 yes no 0 0 0 0 1 8 0 1 67.4 67.4 3 0.0021997 20467 TMT1-7 76.588 55.031 139.33 119.7 106.53 78.999 111.19 189.77 131 123 109 80 116 181 1 1 1 1 1 1 10129 5320 2268 5276 8500 11089 11089 1 EYINCNR Unmodified 967.41816 0.41816443 2332 Q92925-3;Q92925-2;Q92925 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 0 0 0 0 0 3 0 1 31.208 31.208 2 0.0078305 7823 TMT1-2 77.058 60.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5321 2332 5277 8501 11090 11090 1 EYINSLEMS Unmodified 1084.4747 0.47467625 682 P13501 CCL5 C-C motif chemokine 5;RANTES(3-68);RANTES(4-68) yes yes 0 0 0 0 0 2.5 0.5 1 1 62.748 62.748 2 0.0012525 20284 TMT1-2 122.13 115.3 99.692 76.189 132.14 101.64 104.65 136.66 94 80 131 102 109 131 3 3 3 3 3 3 73089 5322 682 5278 8502;8503 11091;11092;11093 11093 3 EYIPTVFDNYSAQSAVDGR Unmodified 2130.9858 0.98581308 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 4.5 0.5 1 1 67.493 67.493 3 1.6132E-35 21169 TMT1-3 158.86 140.5 93.354 124.4 74.385 95.187 165.97 126.38 88 124 80 94 167 123 2 2 2 2 2 2 46491 5323 1522 5279 8504;8505 11094;11095 11094 2 EYKDVDK Unmodified 895.42871 0.42871234 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 5 0 1 35.613 35.613 3 0.040578 8318 TMT1-4 65.246 50.045 332.65 397.86 381 297.77 510.7 386.24 314 401 388 302 514 376 1 1 1 1 1 1 15296 5324 1555;1556 5280 8506 11096 11096 1 EYKPLIIYNAIDSLTR Unmodified 1908.0357 0.03566381 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 1 9 0 1 74.956 74.956 3 9.0721E-05 21638 TMT1-8 69.94 51.107 76.984 92.354 147.84 70.104 46.437 107.41 73 94 145 73 51 102 1 1 1 1 1 1 18672 5325 785 5281 8507 11097 11097 1 EYLELEK Unmodified 922.46476 0.46476349 337 O94992 HEXIM1 Protein HEXIM1 yes yes 0 0 0 0 0 4 0 1 53.938 53.938 2 0.0034184 15828 TMT1-3 86.833 17.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5326 337 5282 8508 11098 11098 1 EYLLQYNDPNRR Unmodified 1579.7743 0.77430417 339 O95168-2;O95168 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 0 0 0 0 1 5 0 1 44.98 44.98 3 0.024452 12008 TMT1-4 53.754 36.265 123.27 113.34 105.92 103.25 102.45 198.55 116 116 109 102 109 189 1 1 1 1 1 1 13718 5327 339 5283 8509 11099 11099 1 EYLLSGDISEAEHCLK Unmodified 1862.872 0.87202888 1946 Q53EL6-2;Q53EL6 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 0 4 0 1 62.407 62.407 3 0.0013162 19161 TMT1-3 49.595 29.213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5328 1946 5284 8510 11100 11100 1 EYLSADAFK Unmodified 1042.4971 0.49712625 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 5 0 1 56.64 56.64 2 0.00041607 16580 TMT1-4 138.4 76.433 77.174 92.883 115.38 93.609 119.97 127.69 73 94 116 94 123 123 1 1 1 1 1 1 11716 5329 2791 5285 8511 11101 11101 1 EYLTTAFEVEER Unmodified 1485.6987 0.69873919 2123 Q86WV1-2;Q86WV1 SKAP1 Src kinase-associated phosphoprotein 1 yes no 0 0 0 0 0 3 0 1 61.549 61.549 2 2.1579E-08 19801 TMT1-2 141.08 112.36 30.78 44.424 18.933 46.019 50.22 29.481 29 44 22 44 51 29 1 1 1 1 1 1 3637.9 5330 2123 5286 8512 11102 11102 1 EYNEFAEVFLK Unmodified 1387.666 0.66598249 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 5 0 1 74.551 74.551 3 0.011619 23617 TMT1-4 60.301 32.44 30.654 51.627 34.073 36.522 42.264 60.622 29 51 36 36 44 58 1 1 1 1 1 1 6556.4 5331 352 5287 8513 11103 11103 1 EYQDAFLFNELK Unmodified 1515.7246 0.72456001 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 0 5 0 1 72.534 72.534 3 0.0046313 22838 TMT1-4 48.704 27.453 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5332 2949 5288 8514 11104 11104 1 EYQDLLNVK Unmodified 1120.5764 0.57643921 575 P08670;P17661;P07196;P07197;P12036-2;Q16352;P07197-2;P12036 VIM;DES;NEFL;NEFM;NEFH;INA Vimentin;Desmin;Neurofilament light polypeptide;Neurofilament medium polypeptide;Neurofilament heavy polypeptide;Alpha-internexin yes no 0 0 0 0 0 5.5 0.5 2 2 59.523 59.523 2;3 2.6621E-07 17740 TMT1-4 166.07 105.71 4350.6 8049.3 4783.5 4479.2 5582.6 7467.9 4119 7916 5072 4455 5779 7155 5 5 5 5 5 5 991450 5333 575 5289 8515;8516;8517;8518 11105;11106;11107;11108;11109 11106 5 EYQISAGDFPEVK Unmodified 1481.7038 0.70382456 2622 Q9H223 EHD4 EH domain-containing protein 4 yes yes 0 0 0 0 0 4 0 1 61.174 61.174 3 0.00011846 18690 TMT1-3 91.207 61.149 77.317 101.92 83.679 88.685 75.433 121.5 73 102 87 87 80 116 1 1 1 1 1 1 16357 5334 2622 5290 8519 11110 11110 1 EYQLNDSAAYYLNDLER Unmodified 2075.9436 0.94361392 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 3.33 0.471 2 1 67.998 67.998 3 3.2371E-30 22609 TMT1-2 172.56 152.3 169.19 271.66 188.23 174.55 234.71 272.59 160 269 197 174 241 262 5 5 5 5 5 5 131060 5335 480 5291 8520;8521;8522 11111;11112;11113;11114;11115 11112 5 EYQLSDSTK Unmodified 1069.4928 0.49276916 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 3.5 0.5 1 1 41.788 41.788 3 0.00026558 10959 TMT1-3 120.45 64.442 293.14 339.4 218.71 259.36 277.98 239.38 276 341 233 254 285 232 2 2 2 2 2 2 53181 5336 1211 5292 8523;8524 11116;11117 11117 2 EYSLQVLK Unmodified 978.5386 0.53859714 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 6 0 1 56.146 56.146 3 0.0088974 16579 TMT1-5 75.738 12.259 46.067 118.78 91.847 56.162 93.456 66.623 44 116 94 58 94 65 1 1 1 1 1 1 7151.4 5337 1006 5293 8525 11118 11118 1 EYTAAVEAK Unmodified 980.48148 0.48147619 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 3.5 0.5 1 1 42.327 42.327 2 6.4606E-05 12285 TMT1-2 152.34 79.081 308.84 516.55 314.98 383.89 441.43 460.71 292 510 337 376 454 444 2 2 2 2 2 2 34249 5338 2479 5294 8526;8527 11119;11120 11119 2 EYTDVYPEIIER Unmodified 1525.73 0.73003931 2927 Q9UNF1-2;Q9UNF1;Q9Y5V3;Q9Y5V3-2 MAGED2;MAGED1 Melanoma-associated antigen D2;Melanoma-associated antigen D1 yes no 0 0 0 0 0 2.67 0.471 1 2 60.301 60.301 2;3 0.00035142 18990 TMT1-1 100.88 91.69 46.597 72.769 41.671 29.999 72.378 75.753 44 72 44 29 73 73 2 2 2 1 2 2 12844 5339 2927 5295 8528;8529;8530 11121;11122;11123 11121 3 EYTHSRPQAQR Unmodified 1371.6644 0.66435979 2034 Q6P589 TNFAIP8L2 Tumor necrosis factor alpha-induced protein 8-like protein 2 yes yes 0 0 0 0 1 3 0 1 18.911 18.911 4 0.0040679 3271 TMT1-2 73.499 36.024 7.3845 6.6893 15.598 4.3505 9.8305 12.511 7 7 15 5 10 12 1 1 1 1 1 1 579.49 5340 2034 5296 8531 11124 11124 1 EYTINIHK Unmodified 1016.5291 0.52909508 1456 P62899-3;P62899;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 0 6 0 1 43.915 43.915 3 0.011248 11694 TMT1-5 72.325 39.063 297.7 351.92 342.26 334.64 358.77 405.5 281 355 351 331 371 390 1 1 1 1 1 1 51409 5341 1456 5297 8532 11125 11125 1 EYTLDVYR Unmodified 1057.508 0.50802529 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 3 0 1 50.366 50.366 2 0.026258 15396 TMT1-2 84.476 69.7 146.02 186 187 174.39 247.09 216.81 138 187 191 174 251 210 1 1 1 1 1 1 35680 5342 1297 5298 8533 11126 11126 1 EYTVTEPERDGASPSR Unmodified 1792.8228 0.8227705 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 1 2 0 1 34.396 34.396 3 5.7736E-05 8740 TMT1-1 81.128 75.285 54.003 88.153 46.248 75.7 70.827 59.807 51 87 51 73 73 58 1 1 1 1 1 1 13116 5343 704 5299 8534 11127 11127 1 EYVAYSHTGR Unmodified 1181.5465 0.54653606 2355 Q969X5;Q969X5-2 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 0 3 0 1 30.12 30.12 3 0.017571 7396 TMT1-2 57.203 34.373 68.857 94.214 69.333 81.996 69.731 83.29 65 94 73 80 73 80 1 1 1 1 1 1 8159.2 5344 2355 5300 8535 11128 11128 1 EYVEHTVK Unmodified 1003.4975 0.4974606 314 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 0 4 0 1 33.67 33.67 3 0.0013806 7841 TMT1-3 103.56 67.619 178.91 281.07 349.79 250.2 291.33 289.1 170 281 350 253 299 279 1 1 1 1 1 1 44621 5345 314 5301 8536 11129 11129 1 EYVESQLQR Unmodified 1150.5619 0.56185177 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 2.5 0.5 1 1 40.382 40.382 2 0.00065928 11376 TMT1-2 131.62 82.193 138.62 205.15 152.86 162.87 154.17 166.16 131 204 160 160 160 160 2 2 2 2 2 2 35334 5346 2205 5302 8537;8538 11130;11131 11131 2 EYVLPSFEVIVEPTEK Unmodified 1877.9662 0.96624684 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 5 0 1 77.813 77.813 3 0.00019668 24872 TMT1-4 76.391 56.284 54.056 64.556 57.387 27.469 42.937 53.141 51 65 58 29 44 51 1 1 1 1 1 1 7973.5 5347 409 5303 8539 11132 11132 1 EYVLYLRPTGPLAQK Unmodified 1746.9669 0.96685596 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 1 9 0 1 60.554 60.554 3 1.9949E-05 15914 TMT1-8 81.311 50.483 61.449 72.347 70.685 81.945 68.158 129.17 58 73 73 80 73 123 1 1 1 1 1 1 15440 5348 2263 5304 8540 11133 11133 1 EYYDHLPELK Unmodified 1305.6241 0.62411768 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 4.5 0.5 1 1 53.042 53.042 3 0.00070206 15432 TMT1-3 95.573 80.372 294.25 423.81 320.62 238.19 267.21 398.52 278 422 331 240 279 381 2 2 2 2 2 2 87418 5349 648 5305 8541;8542 11134;11135 11134 2 EYYEALPELK Unmodified 1253.618 0.61796967 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 4 0 2 62.246 62.246 2;3 6.9586E-05 19088 TMT1-3 142.98 126.35 380.85 654.8 537.77 361.92 496.87 550.8 361 648 550 369 509 530 2 2 2 2 2 2 58928 5350 515 5306 8543;8544 11136;11137 11136 2 EYYNQTGR Unmodified 1029.4516 0.45157304 2793 Q9NZ32 ACTR10 Actin-related protein 10 yes yes 0 0 0 0 0 3 0 1 29.78 29.78 2 0.017525 7252 TMT1-2 90.761 65.91 38.105 43.392 51.146 27.837 43.177 45.672 36 44 51 29 44 44 1 1 1 1 1 1 4936.3 5351 2793 5307 8545 11138 11138 1 FAAAHYNTEILK Unmodified 1376.7089 0.70885036 1201 P49767 VEGFC Vascular endothelial growth factor C yes yes 0 0 0 0 0 7 0 1 50.092 50.092 3 0.0034656 13577 TMT1-6 67.548 38.535 137.98 206.62 258.77 163.7 181.24 260.26 131 207 258 167 189 249 1 1 1 1 1 1 12619 5352 1201 5308 8546 11139 11139 1 FAAATGATPIAGR Unmodified 1202.6408 0.6407708 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 8 0 2 46.709 46.709 2;3 4.0091E-38 12259 TMT1-7 217.45 166.39 411.68 723.09 529.21 482.92 599.3 756.81 390 714 551 481 619 726 2 2 2 2 2 2 130590 5353 579 5309 8547;8548 11140;11141 11140 2 FAADFAAEAASK Unmodified 1197.5666 0.5666028 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 6 0 1 61.742 61.742 3 0.0012361 18714 TMT1-5 77.124 61.752 229.91 281.35 254.67 217.63 290.85 285.92 217 283 261 218 297 276 2 2 2 2 2 2 25589 5354 2263 5310 8549 11142;11143 11142 2 FAADIISVLAMTMSGER Unmodified 1810.8957 0.89574121 1683 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 0 0 0 0 0 9 0 1 105.62 105.62 3 1.8303E-05 32987 TMT1-8 71.08 57.979 7.3961 15.356 6.2971 7.1441 6.9938 0 7 15 7 7 7 0 1 1 1 1 1 0 1726.8 5355 1683 5311 8550 11144 11144 1 FAALEKPTTLELK Unmodified 1459.8286 0.82863115 651 P11277-2;P11277 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 1 8 0 1 62.185 62.185 3 7.9795E-06 18437 TMT1-7 110.25 80.896 202.4 291.92 179.2 200.28 173.49 254.09 191 290 191 196 183 243 1 1 1 1 1 1 18109 5356 651 5312 8551 11145 11145 1 FAANINK Unmodified 776.41809 0.41808807 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 45.416 45.416 2 0.019329 11841 TMT1-7 98.133 49.629 145.72 188.4 235.22 157.37 185.53 204.71 138 190 235 160 191 197 1 1 1 1 1 1 35941 5357 714 5313 8552 11146 11146 1 FAANPNQNK Unmodified 1002.4883 0.4882929 1869 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 0 7 0 1 37.577 37.577 2 0.00050767 8634 TMT1-6 135.84 85.139 46.755 50.542 34.056 36.538 41.457 84.097 44 51 36 36 44 80 1 1 1 1 1 1 4143.5 5358 1869 5314 8553 11147 11147 1 FAAQAAHQGTASQYFMLLLLTDGAVTDVEATR Unmodified 3395.682 0.68199027 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 9 0 1 86.667 86.667 4 2.084E-10 26148 TMT1-8 62.787 40.548 15.706 36.672 34.297 53.332 19.52 30.357 15 36 36 51 22 29 1 1 1 1 1 1 3878 5359 2495 5315 8554 11148 11148 1 FACHSASLTVR Unmodified 1247.6081 0.60809046 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 9 0 1 37.296 37.296 3 0.005557 7150 TMT1-8 61.577 36.727 68.972 79.422 62.618 58.35 69.756 114.2 65 80 65 58 73 109 1 1 1 1 1 1 7215.3 5360 1837 5316 8555 11149 11149 1 FADAASLLLSLMTSR Unmodified 1594.8389 0.83887826 2556 Q9BW27-2;Q9BW27-3;Q9BW27 NUP85 Nuclear pore complex protein Nup85 yes no 0 0 0 0 0 9 0 1 101.67 101.67 3 1.5252E-05 31672 TMT1-8 80.706 57.33 7.2558 14.966 30.202 5.4272 22.529 6.8191 7 15 29 7 22 7 1 1 1 1 1 1 2447.8 5361 2556 5317 8556 11150 11150 1 FADDQLIIDFDNFVR Unmodified 1826.8839 0.88391419 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 5 0 1 89.911 89.911 3 9.872E-05 29577 TMT1-4 80.534 61.459 15.834 67.526 33.88 45.404 35.553 30.965 15 65 37 44 37 30 1 2 2 2 2 2 5486.8 5362 761 5318 8557 11151;11152 11152 2 FADDTYTESYISTIGVDFK Unmodified 2170.9946 0.99464644 1444;2616 P62820;P62820-3;Q9H0U4 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 0 0 5.5 0.5 2 2 80.241 80.241 3;4 1.619E-17 25761 TMT1-4 122.01 106.07 622.22 617.28 579.53 564.98 667.94 841.2 586 625 596 560 691 807 10 9 10 10 10 10 101990 5363 1444;2616 5319 8558;8559;8560;8561 11153;11154;11155;11156;11157;11158;11159;11160;11161;11162 11153 10 FADEHVPGSPFTVK Unmodified 1529.7514 0.75144346 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 6 0 1 55.167 55.167 3 0.028248 16199 TMT1-5 45.863 35.076 53.788 95.108 76.624 88.85 89.021 152.03 51 94 80 87 94 145 1 1 1 1 1 1 9983.3 5364 270 5320 8562 11163 11163 1 FADGEVVR Unmodified 891.44503 0.4450311 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 2.5 0.5 1 1 42.303 42.303 2 0.0038045 12117 TMT1-2 129.56 75.885 176.58 278.38 202.21 190.86 195.01 249.21 167 276 211 189 203 239 2 2 2 2 2 2 33030 5365 1794 5321 8563;8564 11164;11165 11165 2 FADLSEAANR Unmodified 1092.52 0.51998696 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 4.5 0.5 1 1 48.701 48.701 2 9.1651E-51 13465 TMT1-4 239.66 175.24 2121.5 3749.3 2021.4 1992.4 2843 3214.9 2006 3690 2168 1982 2911 3092 5 5 5 5 5 5 845830 5366 575 5322 8565;8566 11166;11167;11168;11169;11170 11169 5 FADQDDIGNVSFDR Unmodified 1597.7009 0.70086445 1958 Q5H9R7-3;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 0 3 0 1 59.412 59.412 2 0.0018017 18970 TMT1-2 58.313 52.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5367 1958 5323 8567 11171 11171 1 FADQHVPGSPFSVK Unmodified 1514.7518 0.75177781 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7.8 0.748 2 2 1 53.487 53.487 3;4 1.2351E-05 14850 TMT1-6 97.797 77.691 1037 1495.9 1171.3 914.64 1180.3 1598.4 980 1490 1208 921 1221 1531 5 5 5 5 5 5 290440 5368 831 5324 8568;8569;8570;8571;8572 11172;11173;11174;11175;11176;11177 11174 6 FADQHVPGSPFSVKVTGEGR Unmodified 2114.0545 0.054501772 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 0 1 51.205 51.205 4 0.0035842 14070 TMT1-7 50.377 33.693 138.53 141.23 222.07 103.92 105.1 120.66 131 145 218 109 109 116 1 1 1 1 1 1 11913 5369 831 5325 8573 11178 11178 1 FAEAFEAIPR Unmodified 1149.5819 0.58185893 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 6 0 1 64.312 64.312 2 0.00031617 19764 TMT1-5 123.5 94.402 415.74 619.46 474.38 492.73 541.78 651.86 393 616 495 486 561 626 3 3 3 3 3 3 72103 5370 1232 5326 8574 11179;11180;11181 11180 3 FAEEDKK Unmodified 865.41815 0.41814765 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5 0 1 36.656 36.656 3 0.0037303 8682 TMT1-4 103.92 34.574 2616 3357.2 2734.5 2389.3 3421.4 3171.8 2469 3364 2824 2394 3480 3067 2 2 2 2 2 2 260650 5371 640 5327 8575 11182;11183 11182 2 FAEFEDFPETSEPVWILGR Unmodified 2268.0739 0.07389981 3018 Q9Y4P1-6;Q9Y4P1;Q9Y4P1-2 ATG4B Cysteine protease ATG4B yes no 0 0 0 0 0 5 0 1 86.904 86.904 3 0.0011968 28527 TMT1-4 53.536 39.075 23.38 29.056 13.351 22.847 21.434 15.378 22 29 15 22 22 15 1 1 1 1 1 1 3747.4 5372 3018 5328 8576 11184 11184 1 FAEFLLPLLIEK Unmodified 1431.8377 0.83773927 2458 Q96T76-5;Q96T76-9;Q96T76;Q96T76-8;Q96T76-7 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 0 9 0 1 98.404 98.404 3 0.00075428 30393 TMT1-8 72.958 48.666 39.228 22.099 60.722 35.736 57.728 37.795 37 22 59 37 58 37 2 1 2 2 2 2 4021.5 5373 2458 5329 8577 11185;11186 11185 2 FAEGLEK Unmodified 792.40177 0.4017693 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 49.255 49.255 2 0.029153 13699 TMT1-4 91.041 45.729 573.5 997.82 690.61 673.31 483.41 922.15 543 985 724 662 522 878 1 1 1 1 1 1 62371 5374 2309 5330 8578 11187 11187 1 FAEHVFR Unmodified 904.45554 0.45553621 1051;1394 P37235;P84074;P61601 HPCAL1;HPCA;NCALD Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta no no 0 0 0 0 0 6.5 0.5 1 1 40.305 40.305 3 0.0017204 9777 TMT1-6 114.72 49.049 339 452.24 348.89 313.14 376.27 381.55 320 452 362 312 386 368 2 2 2 2 2 2 31645 5375 1051;1394 5331 8579;8580 11188;11189 11189 2 FAEIIEK Unmodified 848.46437 0.46436956 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 6 0 1 58.635 58.635 2 0.0083387 17602 TMT1-5 117.02 36.84 306.62 444.2 387.68 282.78 356.72 534.55 290 443 396 286 371 511 1 1 1 1 1 1 44533 5376 932 5332 8581 11190 11190 1 FAELAQIYAQR Unmodified 1308.6826 0.68263561 2714 Q9NQR4 NIT2 Omega-amidase NIT2 yes yes 0 0 0 0 0 8 0 1 66.08 66.08 2 0.0001234 19899 TMT1-7 112.13 55.718 61.437 94.981 53.379 75.616 52.743 129.61 58 94 58 73 58 123 1 1 1 1 1 1 11474 5377 2714 5333 8582 11191 11191 1 FAEQLIR Unmodified 875.4865 0.48650199 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 6 0 1 51.608 51.608 2 0.0088724 14740 TMT1-5 114.72 95.017 199.6 380.89 214.6 257.87 312.05 254.4 189 374 231 253 318 247 1 1 1 1 1 1 73205 5378 3006 5334 8583 11192 11192 1 FAEQTLR Unmodified 863.45012 0.45011648 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 40.169 40.169 2 0.024647 10086 TMT1-4 93.992 72.032 146.28 230.96 106.05 109.33 185.17 218.58 138 228 116 109 189 210 1 1 1 1 1 1 17950 5379 1833 5335 8584 11193 11193 1 FAETQPK Unmodified 819.41267 0.41266834 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 6 0 1 38.817 38.817 2 0.0291 9709 TMT1-5 91.065 50.119 115.4 151.72 133.36 140.83 109.12 167.45 109 152 138 138 116 160 1 1 1 1 1 1 13756 5380 904 5336 8585 11194 11194 1 FAEVYFAQSQQK Unmodified 1444.6987 0.69867961 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 7.5 0.5 1 1 60.079 60.079 2;3 1.4378E-07 17469 TMT1-6 117.98 74.381 169.26 216.82 222.22 214.02 178.81 263.53 160 218 227 211 189 252 2 2 2 2 2 2 37676 5381 1759 5337 8586;8587 11195;11196 11195 2 FAFDYATK Unmodified 961.45453 0.45453316 207 O43837;O43837-3;O43837-2 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 0 7 0 1 59.608 59.608 2 0.017671 17318 TMT1-6 90.657 63.519 84.609 108.35 115.08 78.691 100.5 74.95 80 109 116 80 102 73 1 1 1 1 1 1 7448.7 5382 207 5338 8588 11197 11197 1 FAFQAEVNR Unmodified 1080.5352 0.53524309 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 6.5 0.5 1 1 51.353 51.353 2 1.2324E-05 14644 TMT1-5 156.01 117.68 601.72 1041.2 779.95 573.65 734.21 940.58 570 1029 805 580 758 902 3 3 3 3 3 3 228190 5383 708 5339 8589;8590 11198;11199;11200 11198 3 FAGDKGYLTK Unmodified 1098.571 0.5709599 1362 P60903 S100A10 Protein S100-A10 yes yes 0 0 0 0 1 8 0 1 48.115 48.115 3 0.00097706 12822 TMT1-7 98.156 77.203 828.53 1931.3 1039.2 840.66 999.61 1718.6 787 1884 1106 843 1049 1639 2 2 2 2 2 2 92041 5384 1362 5340 8591 11201;11202 11201 2 FAGGDYTTTIEAFISASGR Unmodified 1962.9323 0.93232095 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 8 0 1 83.437 83.437 3 5.2307E-07 26645 TMT1-7 87.676 61.528 61.457 72.37 69.251 89.811 61.273 105.92 58 73 72 87 66 101 2 2 2 2 2 2 9877.8 5385 543 5341 8592 11203;11204 11203 2 FAGGLHFSGPK Unmodified 1116.5716 0.5716286 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 9 0 1 49.492 49.492 3 9.3364E-07 11571 TMT1-8 114.97 82.445 160.7 239.06 199.56 110.64 226.36 235.52 152 238 203 116 229 227 1 1 1 1 1 1 20721 5386 1632 5342 8593 11205 11205 1 FAGLHFFNPVPVMK Unmodified 1602.8381 0.8380904 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 2 71.199 71.199 3;4 8.7847E-06 20134 TMT1-8 95.401 70.609 99.243 146.17 148.25 155.82 78.613 152.33 94 146 152 152 87 145 2 2 2 2 2 2 32916 5387 1909 5343 8594;8595 11206;11207 11206 2 FAGQMGIQLFETSAK Unmodified 1626.8076 0.80757813 1841 Q15286 RAB35 Ras-related protein Rab-35 yes yes 0 0 0 0 0 8 0 1 72.685 72.685 3 0.00072444 22541 TMT1-7 71.692 52.114 99.854 100.39 84.335 73.459 69.317 106.75 94 102 87 73 73 102 1 1 1 1 1 1 11168 5388 1841 5344 8596 11208 11208 1 FAGSGNEENR Unmodified 1079.4632 0.46320036 2197 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 0 3 0 1 28.73 28.73 2 0.0079393 6862 TMT1-2 87.258 78.044 38.191 34.998 43.722 35.784 50.947 21.998 36 36 44 36 51 22 1 1 1 1 1 1 4008.7 5389 2197 5345 8597 11209 11209 1 FAGVDIR Unmodified 776.41809 0.41808807 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 6 0 1 49.165 49.165 2 0.035191 13775 TMT1-5 88.35 27.992 177.5 543.72 365.06 282.44 446.4 421.12 170 528 380 286 453 407 1 1 1 1 1 1 73069 5390 1419 5346 8598 11210 11210 1 FAGVFHVEK Unmodified 1032.5393 0.53926584 730 P16070;P16070-15;P16070-5;P16070-7;P16070-3;P16070-6;P16070-4;P16070-17;P16070-9;P16070-8;P16070-16;P16070-10;P16070-11;P16070-13;P16070-14;P16070-12;P16070-18;P16070-19 CD44 CD44 antigen yes no 0 0 0 0 0 8 0 1 52.417 52.417 3 0.0012793 14524 TMT1-7 94.692 48.974 245.25 442.21 244.71 222.79 222.23 358.23 232 435 261 221 234 342 1 1 1 1 1 1 58831 5391 730 5347 8599 11211 11211 1 FAGYVTSIAATELEDDDDDYSSSTSLLGQK Unmodified 3197.4412 0.44119368 286 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 0 0 5 0 1 84.365 84.365 4 0.011041 27506 TMT1-4 34.558 28.054 31.355 89.373 64.649 52.177 42.843 22.847 30 87 67 52 44 22 2 2 2 2 2 1 4427.6 5392 286 5348 8600 11212;11213 11213 2 FAHTNVESLVNEYDDNGEGIILFR Unmodified 2751.314 0.31402351 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5 0 2 75.598 75.598 3;4 4.0162E-07 23961 TMT1-4 75.956 68.258 46.507 73.597 56.183 67.461 70.656 75.802 44 73 59 66 73 73 2 2 2 2 2 2 28890 5393 955 5349 8601;8602 11214;11215 11214 2 FAIQDISVEETSAK Unmodified 1536.7672 0.7671531 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 4.25 1.92 1 2 1 63.582 63.582 2;3 3.3382E-19 19227 TMT1-4 163.99 123.49 1666.8 2008.2 1649.7 1414.1 1758.1 1739.6 1572 2019 1702 1414 1800 1679 5 5 5 5 5 5 589070 5394 672;195;1022 5350 8603;8604;8605;8606 11216;11217;11218;11219;11220 11217 5 FAIRPDK Unmodified 845.47594 0.4759373 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 1 8 0 1 41.508 41.508 3 0.031042 10211 TMT1-7 70.912 24.487 674.49 848.81 795.58 595.1 764.4 703.07 637 853 810 601 780 680 1 1 1 1 1 1 35657 5395 388 5351 8607 11221 11221 1 FAIRPDKK Unmodified 973.5709 0.57090032 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 2 9 0 1 39.396 39.396 3 0.024913 7902 TMT1-8 79.469 30.907 115.43 151.81 127.51 102.06 97.303 136.87 109 152 131 102 102 131 1 1 1 1 1 1 13401 5396 388 5352 8608 11222 11222 1 FALDMAR Unmodified 822.40581 0.40580882 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 7 0 1 53.518 53.518 2 0.0075734 14942 TMT1-6 126.24 63.401 552.01 618.95 655.38 495.35 584.79 827.58 521 627 663 499 608 792 1 1 1 1 1 1 178100 5397 1700 5353 8609 11223 11223 1 FALEVAAK Unmodified 847.48035 0.48035398 1324 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 7 0 1 57.658 57.658 2 0.0094927 16509 TMT1-6 100.45 46.043 232.73 222.65 190.81 151.03 198.46 262.97 219 227 196 152 205 252 1 1 1 1 1 1 25061 5398 1324 5354 8610 11224 11224 1 FALGIFAINEAVESGDVGK Unmodified 1935.9942 0.99419293 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7.5 0.5 2 2 86.819 86.819 3;4 3.8026E-18 27846 TMT1-6 127.78 113.95 176.82 394.7 244.25 329.01 271.07 286.48 168 386 262 319 283 276 6 6 6 6 6 6 46406 5399 1139 5355 8611;8612;8613;8614 11225;11226;11227;11228;11229;11230 11225 6 FALGLSGGSLVSMLAR Unmodified 1577.8599 0.85994805 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 9 0 1 82.483 82.483 3 5.6151E-06 24518 TMT1-8 77.726 52.935 100.92 91.653 93.216 80.05 97.525 129.4 95 94 95 80 101 124 2 2 2 2 2 2 11182 5400 349 5356 8615 11231;11232 11231 2 FALITWIGENVSGLQR Unmodified 1802.9679 0.9679186 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 9 0 1 89.735 89.735 3 7.9379E-24 27345 TMT1-8 157.35 124.62 317.7 433.63 338.61 255.69 267.46 367.6 300 433 349 257 279 352 5 5 5 5 5 5 294460 5401 1747 5357 8616 11233;11234;11235;11236;11237 11234 5 FALPSPQHILGLPVGQHIYLSAR Unmodified 2513.3907 0.39069811 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 9 0 1 69.137 69.137 4 1.0103E-21 19335 TMT1-8 103.24 88.781 108.05 153.77 103.59 102.64 142.3 135.59 102 153 109 102 145 131 2 2 2 2 2 2 28945 5402 388 5358 8617 11238;11239 11238 2 FALPYIR Unmodified 878.50142 0.50142377 503 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 0 0 9 0 1 63.285 63.285 2 0.014327 16988 TMT1-8 103.79 36.497 122.71 181.96 140.55 107.81 156.7 166.09 116 181 145 109 160 160 1 1 1 1 1 1 23440 5403 503 5359 8618 11240 11240 1 FALSPPHSSTCENR Unmodified 1601.7256 0.72563941 377 O95866-7;O95866-2 G6B Protein G6b yes no 0 0 0 0 0 7.75 1.3 1 1 2 39.776 39.776 3 2.409E-07 9667 TMT1-6 106.32 97.273 153.5 172.43 204.31 119.04 171.38 180.59 145 175 204 123 175 174 3 3 3 3 3 3 22116 5404 377 5360 8619;8620;8621;8622 11241;11242;11243;11244;11245 11243 5 FAMEPEEFDSDTLR Unmodified 1685.7243 0.72430201 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3 0 1 65.647 65.647 3 1.124E-08 21414 TMT1-2 98.865 97.694 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5405 686 5361 8623 11246 11246 1 FANSLPINDPLQTVYQLMSGR Unmodified 2363.1944 0.19436607 122 O15027-2;O15027-4;O15027-3;O15027;O15027-5 SEC16A Protein transport protein Sec16A yes no 0 0 0 0 0 9 0 1 96.197 96.197 3 0.00066741 29696 TMT1-8 50.776 32.761 15.767 29.285 30.382 5.4165 22.529 6.8191 15 29 30 7 22 7 1 1 1 1 1 1 2539.7 5406 122 5362 8624 11247 11247 1 FANSLVGVQQQLQAFNTYR Unmodified 2183.1124 0.112351 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 9 0 1 75.612 75.612 3 1.6339E-10 21925 TMT1-8 94.45 67.421 62.414 103.27 62.637 50.823 63.081 74.952 59 102 66 51 65 72 2 2 2 2 2 2 14907 5407 1546 5363 8625 11248;11249 11249 2 FANYIDK Unmodified 869.42832 0.42831841 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 5 2.83 1 2 53.963 53.963 2;3 0.031536 14914 TMT1-6 58.981 27.923 1776.3 2724.7 1569.3 1657.4 2267.8 2714.3 1677 2698 1678 1641 2330 2607 3 3 3 3 3 3 549040 5408 575 5364 8626;8627;8628 11250;11251;11252 11251 3 FAQALGLTEAVK Unmodified 1246.6921 0.69213767 1502 P78347-2;P78347-4;P78347-3;P78347 GTF2I General transcription factor II-I yes no 0 0 0 0 0 8 0 1 67.097 67.097 2 1.9784E-08 20342 TMT1-7 117.98 74.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5409 1502 5365 8629 11253 11253 1 FAQHGTFEYEYSQR Unmodified 1761.7747 0.7746981 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 7 0 1 44.406 44.406 3 2.2914E-10 11297 TMT1-6 121.45 96.89 85.036 85.789 62.49 50.827 63.338 67.483 80 87 65 51 65 65 1 1 1 1 1 1 8959.7 5410 857 5366 8630 11254 11254 1 FAQMLEK Unmodified 865.43677 0.4367746 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 58.162 58.162 2 0.0079148 16799 TMT1-7 122.13 56.055 775.03 1346.7 968.95 830.52 889.69 1339.1 734 1330 1008 828 931 1280 3 3 3 3 3 3 121040 5411 1164 5367 8631;8632 11255;11256;11257 11256 3 FAQPGSFEYEYAMR Unmodified 1694.7399 0.73989249 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 5 0 1 61.805 61.805 2 0.011845 18643 TMT1-4 65.234 49.694 77.966 41.122 26.13 53.593 31.491 107.83 73 44 29 51 36 102 1 1 1 1 1 1 8739 5412 1837 5368 8633 11258 11258 1 FAQQHQAR Unmodified 984.48896 0.4889616 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 6 0 1 20.918 20.918 3 0.0010815 3707 TMT1-5 116.9 93.475 4.2442 4.9698 3.8279 4.053 4.8289 6.2582 4 5 4 4 5 6 1 1 1 1 1 1 535.98 5413 1206 5369 8634 11259 11259 1 FAQSTNLK Unmodified 907.47633 0.47633123 885 P25490;O15391 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 yes no 0 0 0 0 0 8 0 1 44.101 44.101 2 0.0062634 11272 TMT1-7 107.57 39.153 61.398 72.205 79.364 57.346 70.058 106.73 58 73 80 58 73 102 1 1 1 1 1 1 6526.2 5414 885 5370 8635 11260 11260 1 FASCFYGPFR Unmodified 1250.5543 0.55426398 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 9 0 1 64.24 64.24 2 4.3838E-12 17369 TMT1-8 173.73 142.99 107.93 121.05 151.89 106.97 165.43 126.4 102 123 152 109 167 123 1 1 1 1 1 1 24011 5415 688 5371 8636 11261 11261 1 FASENDLPEWK Unmodified 1334.6143 0.61428128 1116 P43487-2;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 0 5.33 0.471 2 1 62.138 62.138 2;3 8.13E-08 18746 TMT1-4 154.15 135.98 323.15 396.82 354.75 330.98 397.22 448.11 305 399 365 329 409 431 3 3 3 3 3 3 90377 5416 1116 5372 8637;8638;8639 11262;11263;11264 11263 3 FASFEAQGALANIAVDK Unmodified 1750.889 0.88899957 427 P01903 HLA-DRA HLA class II histocompatibility antigen, DR alpha chain yes yes 0 0 0 0 0 7 0 1 72.248 72.248 3 9.9935E-14 22260 TMT1-6 119.23 97.035 160.54 264.51 205.24 143.2 220.46 242.09 152 262 211 146 225 233 2 2 2 2 2 2 50810 5417 427 5373 8640 11265;11266 11265 2 FASFPDYLVIQIK Unmodified 1539.8337 0.83371653 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 9 0 1 83.518 83.518 2 3.8012E-12 24950 TMT1-8 120.68 66.075 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5418 1122 5374 8641 11267 11267 1 FASKPASEFVK Unmodified 1209.6394 0.63937381 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 1 8 0 1 49.093 49.093 3 0.0087745 13269 TMT1-7 68.548 60.035 258.67 649.34 338.8 307.64 410.17 376.32 246 632 363 307 418 364 1 1 1 1 1 1 23534 5419 817 5375 8642 11268 11268 1 FASWALESDNNTALLLSK Unmodified 1979 6.5851004E-06 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 8 0 1 79.289 79.289 3 3.4008E-07 25042 TMT1-7 91.457 73.092 54.429 26.739 26.726 62.264 33.511 37.42 51 29 29 59 36 36 1 1 1 1 1 1 7948.5 5420 1688 5376 8643 11269 11269 1 FATASADGQIYIYDGK Unmodified 1718.8152 0.81516593 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 6 0 7 63.939 63.939 2;3;4 3.9303E-34 19333 TMT1-5 159.08 148.76 944.61 939.82 944.73 737.24 928.34 916.92 890 958 960 742 950 885 7 7 7 7 7 7 110920 5421 250 5377 8644;8645;8646;8647;8648;8649;8650 11270;11271;11272;11273;11274;11275;11276;11277;11278;11279;11280 11277 11 FATDGEGYKPCDPQVIR Unmodified 1951.9098 0.90981137 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 5 0 1 50.699 50.699 3 2.425E-07 14282 TMT1-4 78.615 57.217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5422 1546 5378 8651 11281 11281 1 FATEAAITILR Unmodified 1204.6816 0.68157298 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 7 0 1 66.592 66.592 3 0.0010871 20086 TMT1-6 85.813 61.469 38.283 35.253 28.103 21.701 35.632 29.897 36 36 29 22 36 29 1 1 1 1 1 1 7413.4 5423 770 5379 8652 11282 11282 1 FATEYCNTIEGTAK Unmodified 1603.7188 0.7188227 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 0 1 54.611 54.611 2 2.1501E-10 15842 TMT1-4 128.08 98.414 37.999 58.206 56.438 59.142 47.234 98.856 36 58 58 58 51 94 1 1 1 1 1 1 8993.9 5424 68 5380 8653 11283 11283 1 FATGDIIQIINK Unmodified 1331.7449 0.74490152 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 8 0 1 73.99 73.99 3 7.0801E-06 23030 TMT1-7 112.13 49.05 146.47 149.47 142.73 99.907 163.33 196.81 138 152 145 102 167 189 1 1 1 1 1 1 26086 5425 1534 5381 8654 11284 11284 1 FATGDIIQIINKDDSNWWQGR Unmodified 2476.2135 0.21352161 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 1 8 0 1 80.365 80.365 4 0.038999 25472 TMT1-7 34.914 11.585 54.02 73.091 56.14 43.958 41.922 60.632 51 73 58 44 44 58 1 1 1 1 1 1 12205 5426 1534 5382 8655 11285 11285 1 FATHAAALSVR Unmodified 1142.6196 0.61964142 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 8.5 0.5 1 1 39.423 39.423 3 5.8481E-07 7971 TMT1-8 119.74 75.54 192.58 260.8 234.37 170.87 284.35 324.48 182 261 239 174 290 312 2 2 2 2 2 2 34144 5427 857 5383 8656;8657 11286;11287 11287 2 FATLAELVQYYMEHHGQLK Unmodified 2277.1252 0.12522387 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 9 0 1 82.546 82.546 4 2.0398E-10 24521 TMT1-8 92.307 68.827 99.407 146.63 120.35 77.254 160.23 104.16 94 146 123 80 160 102 2 2 2 2 2 2 8279.8 5428 1600 5384 8658 11288;11289 11288 2 FATLTELVEYYTQQQGVLQDR Unmodified 2501.2438 0.24381868 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 8.33 0.471 2 1 94.104 94.104 3;4 8.458E-40 30674 TMT1-7 167.99 155.71 78.663 40.003 90.239 73.235 62.511 92.024 74 44 89 73 66 88 4 4 4 4 4 4 49851 5429 936 5385 8659;8660;8661 11290;11291;11292;11293 11292 4 FATLYSTR Unmodified 957.49198 0.4919813 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 8.5 0.5 1 1 50.25 50.25 2 4.8973E-06 13674 TMT1-7 166.68 153.22 337.27 483.93 433.09 396.51 384.31 523.1 319 483 445 393 402 501 2 2 2 2 2 2 61521 5430 333 5386 8662;8663 11294;11295 11294 2 FATSLVDNSVPLLR Unmodified 1530.8406 0.84059282 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 8 0 1 73.331 73.331 2 1.3672E-06 22761 TMT1-7 105.25 84.552 23.006 59.315 50.6 20.364 35.437 37.365 22 58 51 22 36 36 1 1 1 1 1 1 5747.3 5431 1999 5387 8664 11296 11296 1 FAVATLPPA Unmodified 885.496 0.49600404 926 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 0 7 0 1 68.527 68.527 2 0.0020758 20972 TMT1-6 106.84 56.798 123.4 112.64 83.844 89.611 83.783 90.351 116 115 88 88 87 87 3 3 3 3 3 3 8001.3 5432 926 5388 8665 11297;11298;11299 11299 3 FAVGIVIGR Unmodified 930.56509 0.56508666 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 0 9 0 1 63.168 63.168 2 0.00094546 16967 TMT1-8 128.82 57.438 138.7 206.47 137.64 138.36 226.81 124.65 131 205 145 138 227 123 1 1 1 1 1 1 18926 5433 2361 5389 8666 11300 11300 1 FAVGSGSR Unmodified 779.3926 0.3926016 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 4 3 1 1 35.667 35.667 2 0.0013126 7832 TMT1-6 143.02 77.216 309.35 416.7 493.72 270.69 373.19 406.16 293 419 492 281 382 391 3 3 3 3 3 3 47034 5434 128 5390 8667;8668 11301;11302;11303 11302 3 FAVLDFCYHLLK Unmodified 1524.7799 0.77990682 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 9 0 1 74.095 74.095 3 2.3496E-06 21268 TMT1-8 108.37 74.487 68.901 55.481 94.794 72.692 76.975 98.007 65 58 94 73 80 94 1 1 1 1 1 1 13030 5435 2079 5391 8669 11304 11304 1 FAVLHGEAPR Unmodified 1095.5825 0.58252764 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 7 0 1 41.102 41.102 3 0.0044869 9909 TMT1-6 74.267 41.426 77.577 55.151 79.582 73.589 77.447 83.07 73 58 80 73 80 80 1 1 1 1 1 1 45856 5436 1328 5392 8670 11305 11305 1 FAVYLPPK Unmodified 933.53239 0.53238955 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 9 0 1 63.077 63.077 2 0.003108 16873 TMT1-8 132.22 79.045 384.21 525.28 443.18 424.74 478.5 544.93 363 525 458 421 494 524 4 4 4 4 4 4 19935 5437 637 5393 8671 11306;11307;11308;11309 11306 4 FAYDGLK Unmodified 812.40685 0.40685468 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 7 0 1 53.779 53.779 2 0.045814 15004 TMT1-6 83.614 25.037 99.509 145.84 103.77 110.39 136.48 81.385 94 145 109 109 138 80 1 1 1 1 1 1 9082.8 5438 929 5394 8672 11310 11310 1 FAYGYIEDLK Unmodified 1217.5968 0.5968403 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 6.33 0.471 2 1 68.565 68.565 2;3 2.1658E-09 21436 TMT1-5 172.21 90.619 528.66 972.59 853.32 557.55 892.34 774.04 502 961 868 572 903 750 3 3 3 3 3 3 227620 5439 967 5395 8673;8674;8675 11311;11312;11313 11311 3 FAYVAEREDELSLVK Unmodified 1767.9043 0.90431529 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 0 0 0 1 5 0 1 62.382 62.382 3 4.3876E-06 18868 TMT1-4 101.97 76.381 107.91 144.75 134.91 116.25 132.77 181.7 102 145 138 116 138 174 1 1 1 1 1 1 22343 5440 187 5396 8676 11314 11314 1 FCADHPFLFFIQHSK Unmodified 1892.9032 0.90320985 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 9 0 1 66.063 66.063 4 1.7348E-08 18111 TMT1-8 108.66 84.123 138.48 164.84 209.86 127.82 151.72 284.56 131 167 209 131 160 271 1 1 1 1 1 1 25493 5441 1014 5397 8677 11315 11315 1 FCADHPFLFFIR Unmodified 1568.7598 0.75984008 1222;1221 P50453;P50452-3;P50452 SERPINB9;SERPINB8 Serpin B9;Serpin B8 no no 0 0 0 0 0 9 0 1 73.045 73.045 3 4.5633E-08 20881 TMT1-8 127.7 99.782 201.87 328.21 237.68 296.19 177.12 355.25 191 325 251 287 194 338 1 1 1 1 1 1 42067 5442 1222;1221 5398 8678 11316 11316 1 FCECDNFNCDR Unmodified 1535.5228 0.52278221 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 3 0 1 45.119 45.119 2 6.2513E-17 13329 TMT1-2 188.49 182.67 76.958 147.33 105.54 71.203 122.07 96.721 73 145 109 73 123 94 1 1 1 1 1 1 28686 5443 500 5399 8679 11317 11317 1 FCEEDEAALCWVCDAGPEHR Unmodified 2449.9726 0.97256434 2229 Q8NG06 TRIM58 E3 ubiquitin-protein ligase TRIM58 yes yes 0 0 0 0 0 3 0 1 64.882 64.882 3 0.002656 21102 TMT1-2 50.916 43.927 23.218 44.795 27.27 29.255 43.405 37.137 22 44 29 29 44 36 1 1 1 1 1 1 7587.4 5444 2229 5400 8680 11318 11318 1 FCENPDEVKR Unmodified 1292.5819 0.58193529 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 4 0 1 38.62 38.62 3 0.002795 9750 TMT1-3 85.845 64.615 178.49 258.13 259.83 187.37 197.84 262.99 169 258 263 189 206 252 1 1 1 1 1 1 29301 5445 666 5401 8681 11319 11319 1 FCFEVVSPTK Unmodified 1212.5849 0.5848954 1823 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 yes yes 0 0 0 0 0 8 0 1 64.493 64.493 3 0.0079858 19286 TMT1-7 66.056 23.631 53.976 72.967 63.754 43.238 56.064 76.218 51 73 65 44 58 73 1 1 1 1 1 1 8676.8 5446 1823 5402 8682 11320 11320 1 FCFSNEFSTFTHK Unmodified 1650.7137 0.71367774 2126 Q86XR7-2;Q9Y3B3-2;Q9Y3B3 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 0 9 0 1 64.39 64.39 3 0.00019126 17391 TMT1-8 85.287 62.051 92.012 131.28 113.72 77.525 166.78 126.36 87 131 116 80 167 123 1 1 1 1 1 1 10356 5447 2126 5403 8683 11321 11321 1 FCGLPQPETVGQLGTVLR Unmodified 1971.0248 0.024781548 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 8 0 1 71.795 71.795 3 2.3077E-06 22128 TMT1-7 88.565 72.259 114.99 181.87 177.16 161.31 159.96 212.9 109 181 181 160 167 204 2 2 2 2 2 2 55655 5448 489 5404 8684 11322;11323 11322 2 FCHGILTK Unmodified 974.50077 0.50077184 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 0 9 0 1 44.831 44.831 3 0.0049128 9774 TMT1-8 70.525 50.738 91.843 138.36 136.1 99.834 188.24 141.74 87 138 138 102 189 138 1 1 1 1 1 1 7701.4 5449 2327 5405 8685 11324 11324 1 FCIWTESAFR Unmodified 1315.6019 0.60194245 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 9 0 1 69.478 69.478 2 0.00079071 19469 TMT1-8 108.3 78.049 99.489 122.04 127.32 148.14 146.77 157.84 94 123 131 145 152 152 1 1 1 1 1 1 14991 5450 1041 5406 8686 11325 11325 1 FCLDNGAK Unmodified 923.4171 0.41710179 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 6.5 0.5 1 1 48.723 48.723 2 0.0040855 13560 TMT1-5 127.56 70.462 360.41 614.84 401.25 373.63 422.96 494.28 341 607 422 371 437 475 2 2 2 2 2 2 51361 5451 397 5407 8687;8688 11326;11327 11326 2 FCLGLLSNVNR Unmodified 1291.6707 0.67069072 1875 Q15796-2;Q15796;P84022-4;P84022-3;P84022-2;P84022;O15198-2;Q99717;Q15797;O15198 SMAD2;SMAD3;SMAD9;SMAD5;SMAD1 Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 9;Mothers against decapentaplegic homolog 5;Mothers against decapentaplegic homolog 1 yes no 0 0 0 0 0 9 0 1 67.422 67.422 2 0.00020916 18667 TMT1-8 102.55 60.566 99.604 122.36 107.67 54.525 130.37 121 94 123 109 58 131 117 1 1 1 1 1 1 10737 5452 1875 5408 8689 11328 11328 1 FCNVDDDELR Unmodified 1281.5296 0.52956537 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 2 0 1 48.956 48.956 2 0.0049461 14519 TMT1-1 91.584 77.814 38.405 44.226 0 63.706 41.527 45.719 36 44 0 59 44 44 1 1 0 1 1 1 5187.4 5453 2116 5409 8690 11329 11329 1 FCPFAER Unmodified 925.41162 0.41162248 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 7 0 1 50.554 50.554 2 0.0066182 13752 TMT1-6 131.3 86.881 823.85 721.76 1046.9 694.69 833.06 1159.5 777 747 1040 707 865 1110 1 1 1 1 1 1 118770 5454 1506 5410 8691 11330 11330 1 FCTTGIDGAMTIWDFK Unmodified 1861.8379 0.83789198 2314 Q92747;Q92747-2 ARPC1A Actin-related protein 2/3 complex subunit 1A yes no 0 0 0 0 0 8 0 1 83.277 83.277 3 0.0028954 26621 TMT1-7 58.83 39.755 23.337 28.938 20.622 29.815 34.71 45.914 22 29 22 29 36 44 1 1 1 1 1 1 3460.3 5455 2314 5411 8692 11331 11331 1 FDADYAEK Unmodified 957.40798 0.40797689 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P50225-2;P50225 SULT1A4;SULT1A3;SULT1A1 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1 no no 0 0 0 0 0 3 1 1 1 48.922 48.922 3 0.0063224 13763 TMT1-3 79.906 53.304 376.26 574.21 476.58 387.27 389.1 670.07 356 571 490 387 411 639 2 2 2 2 2 2 40201 5456 617;1214 5412 8693;8694 11332;11333 11333 2 FDAGELITQR Unmodified 1148.5826 0.58258722 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 5 0 2 57.744 57.744 2;3 0.00041431 16990 TMT1-4 118.67 85.777 190.66 353.5 297.96 246.06 268.97 336.64 181 349 306 246 279 323 2 2 2 2 2 2 103530 5457 1012 5413 8695;8696 11334;11335 11334 2 FDASFFGVHPK Unmodified 1250.6084 0.60840804 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 61.678 61.678 3 2.3482E-05 16392 TMT1-8 104.52 79.137 183.95 322.78 189.75 167 224.42 247.3 174 318 201 167 230 238 1 1 1 1 1 1 13406 5458 1176 5414 8697 11336 11336 1 FDCHYCR Unmodified 1056.3906 0.39056947 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 31.72 31.72 3 0.0023412 7031 TMT1-3 71.342 56.673 255.25 333.5 278.98 206.03 249.05 239.14 241 334 286 208 255 231 1 1 1 1 1 1 15184 5459 1735 5415 8698;8699 11337;11338 11337 2 FDDAVVQSDMK Unmodified 1253.5598 0.55980286 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 4 0 1 55.648 55.648 3 0.00079856 16495 TMT1-3 88.803 63.586 191.69 252.75 210.45 208.6 155.48 280.19 181 253 218 205 167 267 1 1 1 1 1 1 22383 5460 641 5416 8700 11339 11339 1 FDDDKVSIVTPEDILR Unmodified 1860.9469 0.94690838 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 1 5 0 1 69.508 69.508 3 0.00042407 21624 TMT1-4 75.682 42.375 115.29 175.16 131.99 140.06 154.71 181.07 109 174 138 138 160 174 1 1 1 1 1 1 23071 5461 1298 5417 8701 11340 11340 1 FDDGAGGDNEVQR Unmodified 1378.5749 0.57493566 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 2 0 1 38.406 38.406 2 0.0015971 10349 TMT1-1 84.169 65.729 46.73 58.029 31.817 76.724 62.147 67.517 44 58 36 73 65 65 1 1 1 1 1 1 6321.1 5462 1033 5418 8702 11341 11341 1 FDDPGLMLMGFKPLVLLK Unmodified 2033.1094 0.1093628 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 9 0 1 92.946 92.946 4 7.2335E-09 28474 TMT1-8 94.544 76.18 30.469 51.113 65.572 34.51 49.43 67.88 29 51 65 36 51 65 1 1 1 1 1 1 5618.1 5463 675 5419 8703 11342 11342 1 FDEAALSIQK Unmodified 1120.5764 0.57643921 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 6 0 1 59.849 59.849 3 0.0011571 18037 TMT1-5 90.108 68.022 77.282 109.37 83.236 88.578 82.511 128.76 73 109 87 87 87 123 1 1 1 1 1 1 8285.3 5464 2490 5420 8704 11343 11343 1 FDEFFSEGCAPGSK Unmodified 1576.6504 0.65040879 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6 0 1 67.257 67.257 3 0.00033971 20955 TMT1-5 59.607 51.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5465 451 5421 8705 11344 11344 1 FDEIFLK Unmodified 910.48002 0.48001963 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 7 0 1 71.578 71.578 2 0.013441 21996 TMT1-6 102.72 41.758 170.04 277.45 220.39 173.36 254.38 310.41 161 275 227 175 261 298 1 1 1 1 1 1 18880 5466 2835 5422 8706 11345 11345 1 FDEILEASDGIMVAR Unmodified 1664.808 0.80797206 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 4.5 0.5 1 1 79.471 79.471 3 8.2987E-06 25820 TMT1-3 95.854 75.415 153.66 211.75 143.31 172.34 145.6 189.86 145 211 152 168 153 182 3 3 3 3 3 3 16359 5467 706;707 5423 8707;8708 11346;11347;11348 11346 3 FDEISFVNFAR Unmodified 1343.651 0.65100113 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 7 0 1 74.608 74.608 2 0.0066205 23219 TMT1-6 83.775 43.423 53.981 80.536 56.444 27.121 64.428 67.452 51 80 58 29 65 65 1 1 1 1 1 1 15884 5468 1627 5424 8709 11349 11349 1 FDETEQALANER Unmodified 1421.6423 0.64228694 2072 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 0 2 0 1 50.913 50.913 3 0.015982 15287 TMT1-1 53.448 37.223 46.752 50.536 34.4 28.836 43.131 45.673 44 51 36 29 44 44 1 1 1 1 1 1 3742.4 5469 2072 5425 8710 11350 11350 1 FDFVHDLVLYLYR Unmodified 1698.877 0.87697832 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 91.837 91.837 3 3.3867E-06 28057 TMT1-8 100.02 63.04 54.107 64.697 48.734 51.485 71.94 59.775 51 65 51 51 73 58 1 1 1 1 1 1 20562 5470 1540 5426 8711 11351 11351 1 FDGAEGSWFQK Unmodified 1270.5619 0.56185177 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 7 0 1 64.527 64.527 2 0.0022811 19248 TMT1-6 93.667 69.157 61.189 86.736 102.05 62.803 114.83 105.46 58 87 102 65 116 102 1 1 1 1 1 1 9366.5 5471 2325 5427 8712 11352 11352 1 FDGALNVDLTEFQTNLVPYPR Unmodified 2408.2012 0.20122559 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 7.29 1.03 2 2 2 1 86.426 86.426 3;4 8.2083E-41 27665 TMT1-6 178.75 151.94 749.37 899.67 824.61 765.13 697.71 944.82 707 906 847 757 729 905 17 18 18 18 17 18 818210 5472 622;1491;2068;2510;1492;2783 5428 8713;8714;8715;8716;8717;8718;8719 11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368;11369;11370 11361 18 FDGGEEVLISGEFNDLR Unmodified 1895.8901 0.89012178 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 74.26 74.26 3 2.7463E-07 24792 TMT1-2 92.211 70.056 54.086 58.163 57.787 51.385 48.617 68.969 51 59 59 51 51 66 2 2 2 2 2 2 11038 5473 1900 5429 8720;8721 11371;11372 11371 2 FDGGEEVLISGEFNDLRK Unmodified 2023.9851 0.9850848 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 1 5 0 1 67.81 67.81 3 0.0002971 20951 TMT1-4 69.069 52.19 115.33 152.62 143.44 83.293 172.75 158.17 109 153 145 87 174 153 2 2 2 2 2 2 20086 5474 1900 5430 8722 11373;11374 11373 2 FDGILGMAYPR Unmodified 1238.6118 0.61177885 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 8 0 1 71.41 71.41 2 2.104E-06 22027 TMT1-7 134.25 96.525 139.06 150.26 125.05 156.64 108.68 158.93 131 152 131 152 116 152 1 1 1 1 1 1 41071 5475 533 5431 8723 11375 11375 1 FDHDEGDQCSR Unmodified 1364.5051 0.50514153 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 2 0 1 26.872 26.872 3 0.0073961 5763 TMT1-1 64.64 58.204 30.615 59.074 34.297 21.465 28.571 22.637 29 58 36 22 29 22 1 1 1 1 1 1 3940.6 5476 322 5432 8724 11376 11376 1 FDHIFYTGNTAVGK Unmodified 1568.7623 0.7623425 1249 P51648;P51648-2 ALDH3A2 Fatty aldehyde dehydrogenase yes no 0 0 0 0 0 8 0 1 58.227 58.227 3 0.00073678 16855 TMT1-7 56.08 32.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5477 1249 5433 8725 11377 11377 1 FDILDQEMK Unmodified 1137.5376 0.53761086 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 68.939 68.939 2 0.0018059 21468 TMT1-4 112.75 77.941 38.205 43.67 34.11 45.552 26.95 37.607 36 44 36 44 29 36 1 1 1 1 1 1 4473.5 5478 651 5434 8726 11378 11378 1 FDKGPWLK Unmodified 989.53345 0.53345218 347 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 0 1 9 0 1 55.502 55.502 3 0.0037239 13924 TMT1-8 79.986 39.554 247.68 337.09 285.54 176.16 247.58 291.42 234 337 291 181 254 280 1 1 1 1 1 1 14548 5479 347 5435 8727 11379 11379 1 FDLGQDVIDFTGHALALYR Unmodified 2150.0797 0.07965389 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 8 0.816 1 1 1 89.279 89.279 3 2.2967E-35 28866 TMT1-6 155.28 139.34 199.2 300.82 168.87 177.79 181.69 228.27 188 298 181 175 189 219 5 5 5 5 5 5 68398 5480 1217;972 5436 8728;8729;8730 11380;11381;11382;11383;11384 11380 5 FDLMYAK Unmodified 886.42588 0.42587556 1491;2068;1492;2510;622;2783;14 P0DPH8;P0DPH7;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2;A6NHL2-2;A6NHL2 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8;TUBAL3 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3 no no 0 0 0 0 0 5.33 3.09 1 1 1 63.632 63.632 2 0.007763 18796 TMT1-6 123.96 65.38 767.99 915.33 894.83 768.71 633.65 1079.9 725 923 913 763 675 1030 4 4 4 4 4 4 560960 5481 622;1491;2068;2510;1492;2783;14 5437 8731;8732;8733 11385;11386;11387;11388 11386 4 FDLNSPWEAFPVYR Unmodified 1739.8308 0.83075641 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 8 0 1 81.324 81.324 3 0.022033 25855 TMT1-7 48.405 33.614 38.115 50.974 43.096 28.317 43.155 45.673 36 51 44 29 44 44 1 1 1 1 1 1 4510 5482 281 5438 8734 11389 11389 1 FDLVPVPTNLYGDFFTGDAYVILK Unmodified 2703.3836 0.38360663 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 8.67 0.471 2 4 101.61 101.61 3;4;5 8.7159E-16 31926 TMT1-8 85.945 70.855 242.3 306.27 369.24 306.81 306.61 324.28 229 309 372 306 317 312 10 13 13 12 12 12 122600 + 5483 506 5439 8735;8736;8737;8738;8739;8740 11390;11391;11392;11393;11394;11395;11396;11397;11398;11399;11400;11401;11402 11401 13 FDMAENVVIVASQK Unmodified 1549.781 0.78102903 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 7 0 1 73.582 73.582 3 0.0076705 22798 TMT1-6 55.186 35.347 23.146 59.705 26.708 21.789 35.372 37.367 22 58 29 22 36 36 1 1 1 1 1 1 2839.8 5484 2100 5440 8741 11403 11403 1 FDMIVPILEK Unmodified 1203.6573 0.65733206 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 7.33 0.471 2 1 83.801 83.801 2;3 0.0002692 26836 TMT1-7 125.82 87.524 899.26 1127.9 1012.7 931.14 806.03 1630.4 849 1133 1041 921 865 1551 5 5 5 5 5 5 204660 5485 1700 5441 8742;8743;8744 11404;11405;11406;11407;11408 11407 5 FDMIVPILEK Oxidation (M) 1219.6522 0.65224669 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 1 0 0 8 0 2 75.22 75.22 3 0.0031801 26080 TMT1-7 55.401 45.713 61.694 56.839 42.624 28.355 42.64 60.611 58 58 44 29 44 58 1 1 1 1 1 1 10447 5486 1700 5441 8745;8746 11409;11410 11410 260 2 FDNVLPVSLAFDK Unmodified 1463.766 0.76603089 350 O95352-3;O95352 ATG7 Ubiquitin-like modifier-activating enzyme ATG7 yes no 0 0 0 0 0 8 0 1 80.817 80.817 3 0.0013433 25647 TMT1-7 73.834 51.779 46.647 42.689 58.726 27.7 26.415 77.064 44 44 58 29 29 73 1 1 1 1 1 1 7961.5 5487 350 5442 8747 11411 11411 1 FDPELLFGVQFQYR Unmodified 1757.8777 0.8777066 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 8 0 1 87.018 87.018 3 0.026089 27943 TMT1-7 46.746 36.279 23.496 21.824 0 23.648 21.141 22.849 22 22 0 22 22 22 1 1 0 1 1 1 3330.8 5488 855 5443 8748 11412 11412 1 FDPTQFQDCIIQGLTETGTDLEAVAK Unmodified 2896.3801 0.38005417 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 6.67 0.471 1 2 100.39 100.39 3;4 3.6296E-09 32643 TMT1-6 67.778 54.721 23.298 48.543 23.965 30.68 36.226 31.06 22 47 26 30 37 30 2 2 2 3 3 2 4172.7 5489 2073 5444 8749;8750;8751 11413;11414;11415;11416 11416 4 FDQGDTTR Unmodified 938.40937 0.40937388 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 2.5 0.5 1 1 32.382 32.382 2 0.0011881 8159 TMT1-2 104.01 47.892 130.7 128.81 105.38 93.644 149.78 142.83 123 131 109 94 152 138 1 1 1 1 1 1 18161 5490 3046 5445 8752;8753 11417;11418 11418 2 FDQLFDDESDPFEVLK Unmodified 1942.8836 0.88363942 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 0 4.5 0.5 1 1 89.787 89.787 3 4.9742E-16 29458 TMT1-4 135.45 109.59 124.33 153.19 73.072 160.07 149.34 135.38 117 153 80 153 153 131 4 4 2 4 3 4 28341 5491 2207 5446 8754;8755 11419;11420;11421;11422 11420 4 FDQLLAEEK Unmodified 1091.5499 0.5498901 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 0 4 2.16 1 1 1 63.986 63.986 2 0.00025038 19359 TMT1-4 143.61 74.877 1296.8 1803.9 1618 1301.2 1471.3 2047.4 1226 1803 1655 1304 1531 1960 4 4 4 4 4 4 370490 5492 1019;1020;1029;2091 5447 8756;8757;8758 11423;11424;11425;11426 11424 4 FDREVDIGIPDATGR Unmodified 1659.8216 0.82164829 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 4 0 1 56.018 56.018 3 5.5318E-05 16630 TMT1-3 89.358 66.634 77.04 140 98.049 79.165 129.27 119.97 73 138 102 80 131 116 1 1 1 1 1 1 38135 5493 1311 5448 8759 11427 11427 1 FDSDAASPR Unmodified 964.42502 0.42502394 425;629 P01889;P10321;P10321-2 HLA-B;HLA-C HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain no no 0 0 0 0 0 3 0.816 1 1 1 35.685 35.685 2 5.1647E-06 9523 TMT1-2 162.59 146.25 698.86 956.19 575 906.01 855.9 1094.9 659 952 625 875 894 1050 4 4 4 4 4 4 119080 5494 425;629 5449 8760;8761;8762 11428;11429;11430;11431 11429 4 FDSDAASQR Unmodified 995.43084 0.4308376 474 P04439;P04439-2 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 0 0 0 0 0 3 0.816 1 1 1 33.238 33.238 2 9.7565E-06 8600 TMT1-2 158.37 101.64 698.69 986.11 759.22 810.76 861.7 931.61 660 983 793 798 890 897 6 6 6 6 6 6 86099 5495 474 5450 8763;8764;8765 11432;11433;11434;11435;11436;11437 11435 6 FDSDVGEFR Unmodified 1070.4669 0.46688876 802 P20039;Q95IE3;Q5Y7A7;P01911;P01912;P04440 HLA-DRB1;HLA-DPB1 HLA class II histocompatibility antigen, DRB1-11 beta chain;HLA class II histocompatibility antigen, DRB1-12 beta chain;HLA class II histocompatibility antigen, DRB1-13 beta chain;HLA class II histocompatibility antigen, DRB1-15 beta chain;HLA class II histocompatibility antigen, DRB1-3 chain;HLA class II histocompatibility antigen, DP beta 1 chain yes no 0 0 0 0 0 2.5 0.5 1 1 52.646 52.646 2 0.0015488 16204 TMT1-2 117.89 93.735 161.52 255.54 228.56 141.7 167.93 220.13 153 254 232 145 174 211 2 2 2 2 2 2 33124 5496 802 5451 8766;8767 11438;11439 11439 2 FDSDVGEYR Unmodified 1086.4618 0.46180338 467 Q29974;P04229;Q30134;Q30154;P13760;Q9GIY3;Q9TQE0;P79483;P13761 HLA-DRB1;HLA-DRB5;HLA-DRB3 HLA class II histocompatibility antigen, DRB1-16 beta chain;HLA class II histocompatibility antigen, DRB1-1 beta chain;HLA class II histocompatibility antigen, DRB1-8 beta chain;HLA class II histocompatibility antigen, DR beta 5 chain;HLA class II histocompatibility antigen, DRB1-4 beta chain;HLA class II histocompatibility antigen, DRB1-14 beta chain;HLA class II histocompatibility antigen, DRB1-9 beta chain;HLA class II histocompatibility antigen, DR beta 3 chain;HLA class II histocompatibility antigen, DRB1-7 beta chain yes no 0 0 0 0 0 2.5 0.5 1 1 46.201 46.201 2 0.00096483 13475 TMT1-1 126.24 87.451 177.31 232.9 119.25 171.15 227.31 218.44 167 232 131 167 232 211 2 2 2 2 2 2 29038 5497 467 5452 8768;8769 11440;11441 11440 2 FDSEYER Unmodified 944.38758 0.3875758 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 2 0 1 39.179 39.179 2 0.0019784 10636 TMT1-1 91.9 64.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5498 1109 5453 8770 11442 11442 1 FDSLTDLVEHYK Unmodified 1465.7089 0.70890994 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 6.5 0.5 1 1 72.588 72.588 3 0.00019694 23006 TMT1-5 91.858 60.63 84.495 131.77 114.4 62.352 99.679 120.81 80 131 116 65 102 116 2 2 2 2 2 2 21497 5499 1600 5454 8771;8772 11443;11444 11443 2 FDSLTDLVEHYKK Unmodified 1593.8039 0.80387296 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 1 7 0 1 67.04 67.04 4 0.042668 20271 TMT1-6 40.066 11.053 37.96 74.289 49.281 28.106 34.788 45.911 36 73 51 29 36 44 1 1 1 1 1 1 3340.9 5500 1600 5455 8773 11445 11445 1 FDTGNLCMVTGGANLGR Unmodified 1781.8189 0.81888787 1440 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 0 7 0 1 64.273 64.273 3 1.2568E-08 19159 TMT1-6 81.656 74.247 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5501 1440 5456 8774 11446 11446 1 FDTIYQILLK Unmodified 1252.7067 0.7067251 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 0 9 0 1 87.613 87.613 3 0.0013132 26573 TMT1-8 83 28.451 53.955 80.465 60.85 98.329 99.893 66.44 51 80 65 95 102 65 2 2 2 2 2 2 10425 5502 1769 5457 8775 11447;11448 11448 2 FDTLCDLYDTLTITQAVIFCNTK Unmodified 2751.3136 0.31355451 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 0 9 0 2 109.41 109.41 3;4 4.1782E-07 33929 TMT1-8 67.76 52.838 7.4372 6.8359 13.875 18.519 17.445 15.492 7 7 14 18 18 15 1 1 2 2 2 2 3742.2 5503 1059 5458 8776;8777 11449;11450 11449 2 FDTLWQLVEYLK Unmodified 1553.813 0.81298108 1114 P43403;P43403-3 ZAP70 Tyrosine-protein kinase ZAP-70 yes no 0 0 0 0 0 9 0 1 104.03 104.03 3 0.00047252 32425 TMT1-8 80.69 58.644 7.4331 15.459 0 7.651 0 15.99 7 15 0 7 0 15 1 1 0 1 0 1 1230.1 5504 1114 5459 8778 11451 11451 1 FDTPLETK Unmodified 949.47566 0.47566253 87 O00754-2;O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 0 0 0 0 0 5 0 1 53.634 53.634 2 0.032144 15473 TMT1-4 80.239 25.83 114.79 189.95 203.46 94.55 255.73 163.26 109 189 203 102 254 160 1 1 1 1 1 1 13343 5505 87 5460 8779 11452 11452 1 FDTQYPYGEK Unmodified 1246.5506 0.55061839 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 5 0 2 51.874 51.874 2;3 0.0018844 14786 TMT1-4 84.687 52.929 562.93 690.14 744.29 588.38 644.96 748.05 532 696 753 590 667 719 3 3 3 3 3 3 65917 5506 944 5461 8780;8781 11453;11454;11455 11454 3 FDVINLAAEK Unmodified 1118.5972 0.59717465 1299 P54619-2;P54619;P54619-3;Q9UGJ0-2;Q9UGJ0-3;Q9UGJ0 PRKAG1;PRKAG2 5'-AMP-activated protein kinase subunit gamma-1;5'-AMP-activated protein kinase subunit gamma-2 yes no 0 0 0 0 0 7 0 1 68.715 68.715 2 0.00046287 20909 TMT1-6 116.55 70.084 84.8 85.133 102.7 47.714 101.41 89.848 80 87 102 51 102 87 1 1 1 1 1 1 11578 5507 1299 5462 8782 11456 11456 1 FDVNTSAVQVLIEHIGNLDR Unmodified 2239.1597 0.15969512 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7.5 0.5 1 1 85.723 85.723 3 1.0764E-13 27508 TMT1-7 112.14 85.94 54.705 95.683 102.2 48.311 71.28 83.246 52 95 102 51 73 80 3 3 3 3 3 3 17626 5508 1540 5463 8783;8784 11457;11458;11459 11458 3 FDVQFPENNWINPDK Unmodified 1861.8635 0.8635131 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 6 0 1 75.047 75.047 3 0.0048795 24001 TMT1-5 57.288 45.815 38.219 51.263 25.38 61.265 32.75 60.893 36 51 29 58 36 58 1 1 1 1 1 1 4994.5 5509 245 5464 8785 11460 11460 1 FDVQLKDLEK Unmodified 1233.6605 0.66050319 1418 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 1 7 0 1 60.274 60.274 3 0.031829 17598 TMT1-6 57.019 18.385 108.04 168.83 94.036 126.92 101.99 180.44 102 167 102 123 109 172 1 1 1 1 1 1 10563 5510 1418 5465 8786 11461 11461 1 FDVQSSLK Unmodified 922.476 0.47599688 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 7 0 1 53.253 53.253 2 0.0051305 14800 TMT1-6 120.12 50.696 217.05 311.42 226.3 159.54 156.71 310 205 310 234 161 167 295 1 1 1 1 1 1 28050 5511 934 5466 8787 11462 11462 1 FDVSGYPTLK Unmodified 1125.5706 0.57062555 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 7.5 0.5 1 1 61.107 61.107 2 3.3966E-06 17900 TMT1-6 155.42 0 249.18 686.27 459.29 298.89 435.44 474.74 238 668 476 306 445 457 2 2 2 2 2 2 58464 5512 686 5467 8788;8789 11463;11464;11465 11463 3 FDYAFDDSAPNEMVYR Unmodified 1938.8094 0.80942862 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 4 0 2 68.044 68.044 2;3 5.8106E-07 21344 TMT1-3 100.23 99.623 68.868 110.43 53.837 43.681 63.923 60.004 65 109 58 44 65 58 1 1 1 1 1 1 13563 5513 39 5468 8790;8791 11466;11467 11466 2 FDYVAQQEQELDIK Unmodified 1724.8257 0.82573061 742 P16333 NCK1 Cytoplasmic protein NCK1 yes yes 0 0 0 0 0 4 0 1 67.607 67.607 3 0.033314 21083 TMT1-3 43.791 24.958 46.441 88.524 54.597 58.666 78.389 75.581 44 87 58 58 80 73 1 1 1 1 1 1 14504 5514 742 5469 8792 11468 11468 1 FDYVMQFLNK Unmodified 1303.6271 0.62709457 334 O94925;O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 9 0 1 85.348 85.348 3 0.0028013 25583 TMT1-8 71.016 48.137 61.533 63.948 63.594 58.123 78.708 67.044 58 65 65 58 80 65 2 2 2 2 2 2 7978.9 5515 334 5470 8793 11469;11470 11469 2 FEAFEHENK Unmodified 1149.5091 0.50908792 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 4 0 1 44.565 44.565 3 0.0012822 12128 TMT1-3 65.627 44.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5516 2841 5471 8794 11471 11471 1 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTR Unmodified 3937.0262 0.026168341 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 7.8 0.748 2 2 1 104.68 104.68 4;5 8.0446E-63 33538 TMT1-7 152.95 148 43.579 45.379 37.456 33.793 29.104 35.473 41 46 38 33 30 34 9 10 9 8 8 8 19712 5517 1380 5472 8795;8796;8797;8798;8799 11472;11473;11474;11475;11476;11477;11478;11479;11480;11481 11478 10 FEAWNIIK Unmodified 1019.544 0.54401687 1743 Q14005-3;Q14005-2;Q14005 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 0 8.5 0.5 1 1 69.03 69.03 2;3 0.0035185 21093 TMT1-7 131.06 40.021 292.88 377.55 228.95 318.31 249.55 318.01 276 377 247 308 263 305 3 3 3 3 3 3 33433 5518 1743 5473 8800;8801 11482;11483;11484 11482 3 FECQPGYR Unmodified 1055.4495 0.44946455 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 4 0 1 38.25 38.25 2 5.8388E-05 9596 TMT1-3 159.46 103.44 256.53 287.58 283.99 228.18 101.73 326.49 242 291 289 226 118 309 1 1 1 1 1 1 62667 5519 733 5474 8802 11485 11485 1 FEDENFILK Unmodified 1153.5655 0.56554017 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 0 4.2 1.6 1 4 67.168 67.168 2;3 0.0021338 20379 TMT1-4 105.57 33.083 3063.8 4608.7 3967.4 3022.1 5036.7 4205.6 2899 4588 4061 3068 5086 4080 6 6 6 6 6 6 1018800 5520 1461 5475 8803;8804;8805;8806;8807 11486;11487;11488;11489;11490;11491 11488 6 FEDFEPSDSR Unmodified 1227.5044 0.50439647 1976 Q5T447;Q5T447-2 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes no 0 0 0 0 0 2 0 1 52.286 52.286 2 7.6855E-05 15819 TMT1-1 103.7 63.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5521 1976 5476 8808 11492 11492 1 FEDGVLDPDYPR Unmodified 1421.6463 0.64630969 456 P04004 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes yes 0 0 0 0 0 2.67 0.471 1 2 61.02 61.02 2;3 5.0085E-10 19354 TMT1-1 156.48 86.452 137.44 204.93 171.22 139.61 170.4 181.69 130 204 176 140 175 175 5 5 5 5 5 5 26431 5522 456 5477 8809;8810;8811 11493;11494;11495;11496;11497 11494 5 FEDYLNAESR Unmodified 1242.5517 0.55168102 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 4 0 1 56.176 56.176 2 4.2842E-05 16670 TMT1-3 147.74 133.05 292.1 388.32 351.87 313.31 358.01 486.54 276 389 361 312 372 466 2 2 2 2 2 2 81249 5523 1883 5478 8812 11498;11499 11498 2 FEEEIKAEQEER Unmodified 1535.7104 0.71036651 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 1 2 0 1 46.185 46.185 3 3.0862E-05 13477 TMT1-1 105.03 87.95 161.52 349.43 149.58 209.6 178.61 275.26 153 341 167 203 189 263 2 2 2 2 2 2 37421 5524 2376 5479 8813 11500;11501 11501 2 FEEHKNEK Unmodified 1059.4985 0.49852324 3061 Q9Y6M9 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes yes 0 0 0 0 1 5 0 1 30.177 30.177 4 0.0062712 6168 TMT1-4 83.783 68.632 153.71 188.14 155.23 130.72 170.5 221.13 145 189 160 131 176 212 1 1 1 1 1 1 6236.4 5525 3061 5480 8814 11502 11502 1 FEELCSDLFR Unmodified 1314.5914 0.59143734 618;754 P17066;P48741;P0DMV8;P0DMV9;P0DMV8-2 HSPA6;HSPA7;HSPA1A;HSPA1B Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 5.5 0.5 1 1 70.804 70.804 2 4.7669E-05 22245 TMT1-4 146.88 100.44 369.56 521.94 384.36 342.62 381.87 392.05 349 520 400 341 393 378 3 3 3 3 3 3 111340 5526 754;618 5481 8815;8816 11503;11504;11505 11504 3 FEELNADLFR Unmodified 1252.6088 0.60880197 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 69.406 69.406 2 2.9559E-09 21570 TMT1-4 169.41 102.24 1171.4 1866.9 1539.4 1245 1624.8 1886.3 1109 1853 1583 1251 1670 1813 3 3 3 3 3 3 554960 5527 641 5482 8817;8818 11506;11507;11508 11506 3 FEELNMDLFR Unmodified 1312.6122 0.61217279 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 6 0 1 75.027 75.027 2 0.00044774 23975 TMT1-5 117.02 88.624 92.258 108.22 91.925 63.412 114.54 112.93 87 109 94 65 116 109 1 1 1 1 1 1 19015 5528 640 5483 8819 11509 11509 1 FEELTNLIR Unmodified 1133.6081 0.60807369 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 7 0 1 71.105 71.105 2 0.0020367 21808 TMT1-6 107.69 53.082 161.33 195.47 131.21 124.93 147.82 188.73 152 196 138 124 153 181 2 2 2 2 2 2 29778 5529 2476 5484 8820 11510;11511 11510 2 FEETTADGR Unmodified 1024.4462 0.44615331 1554 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 0 0 2 0 1 35.485 35.485 2 0.00033564 9176 TMT1-1 102 72.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5530 1554 5485 8821 11512 11512 1 FEETTADGRK Unmodified 1152.5411 0.54111633 1554 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 0 1 4 0 1 34.139 34.139 3 0.00027149 7978 TMT1-3 104.43 72.216 153.1 196.16 250.68 139.18 231.9 249.22 145 198 249 145 236 240 1 1 1 1 1 1 22532 5531 1554 5486 8822 11513 11513 1 FEGAIYR Unmodified 854.42865 0.42865276 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 5 0 1 45.786 45.786 2 0.0079545 12340 TMT1-4 76.847 46.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5532 842 5487 8823 11514 11514 1 FEGEPATHTQPGVQLQSNTYDLQESNVR Unmodified 3144.4748 0.47483427 1752 Q14141-2;Q14141-4;Q14141;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 0 4 0 1 51.871 51.871 4 9.5435E-45 15008 TMT1-3 149.73 136.46 68.785 78.902 94.489 72.291 99.222 120.82 65 80 95 73 102 116 2 2 2 2 2 2 24408 5533 1752 5488 8824 11515;11516 11515 2 FEGGDRDLEHLSK Unmodified 1501.7161 0.71612058 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 6 0 1 43.533 43.533 4 0.024844 11595 TMT1-5 50.314 44.83 184.42 196.73 217.64 196.41 257.8 241.02 174 200 221 196 263 233 1 1 1 1 1 1 10569 5534 686 5489 8825 11517 11517 1 FEGKPLLQR Unmodified 1086.6186 0.61857879 2637 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 0 1 8 0 1 45.829 45.829 3 0.010282 11986 TMT1-7 74.173 42.415 226.88 573.88 334.61 385.4 357.07 508.95 216 559 358 377 375 487 1 1 1 1 1 1 42138 5535 2637 5490 8826 11518 11518 1 FEGQFSINK Unmodified 1068.524 0.52400971 2355 Q969X5;Q969X5-2;Q969X5-3 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 0 7 0 1 56.467 56.467 2 0.00055251 16080 TMT1-6 134.59 54.413 84.69 92.383 114.98 102.4 118.76 151.18 80 94 116 102 123 145 1 1 1 1 1 1 10765 5536 2355 5491 8827 11519 11519 1 FEHSLGVGYLAGCLVHALGEK Unmodified 2256.1361 0.13612291 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 8.5 0.5 1 1 74.993 74.993 3;4 1.4631E-06 21565 TMT1-8 70.501 50.662 84.694 139.88 74.124 81.173 98.316 104.86 80 138 80 80 101 101 2 2 2 2 2 2 17602 5537 3006 5492 8828;8829 11520;11521 11521 2 FEIGEGENLDLPYGLER Unmodified 1949.9371 0.93707198 1570 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 0 4 0 1 74.257 74.257 3 1.0238E-09 23790 TMT1-3 105.39 84.156 30.725 35.635 35.7 21.524 20.982 30.315 29 36 36 22 22 29 1 1 1 1 1 1 9218 5538 1570 5493 8830 11522 11522 1 FEIPYFTTSGIQVR Unmodified 1656.8512 0.8511575 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 0 8 0 1 77.032 77.032 2 0.0013225 24205 TMT1-7 78.548 31.657 19.043 24.907 24.473 22.139 23.838 37.696 18 25 25 22 25 36 1 1 1 1 1 1 8146.5 5539 2569 5494 8831 11523 11523 1 FEIVYNLLSLR Unmodified 1365.7656 0.76563696 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 9 0 1 89.998 89.998 2 3.9485E-05 27406 TMT1-8 108.9 65.485 77.479 86.177 69.756 58.062 62.455 83.498 73 87 72 58 65 80 2 2 2 2 2 2 9316.5 5540 281 5495 8832 11524;11525 11524 2 FEIWDTAGQER Unmodified 1350.6204 0.62042929 1236;1371 P51148;P51148-2;P20339-2;P20339;P61020;P61020-2 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 0 0 0 0 0 5 0 2 61.84 61.84 2;3 1.4601E-16 18614 TMT1-4 183.13 131.26 209.18 222.27 180.78 185.03 166.2 212.72 197 225 188 182 174 204 2 2 2 2 2 2 49839 5541 1236;1371 5496 8833;8834 11526;11527 11526 2 FELALQLGELK Unmodified 1259.7125 0.71253876 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 8 0 1 78.641 78.641 2 0.0031468 24839 TMT1-7 64.224 34.876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5542 1021 5497 8835 11528 11528 1 FELDTSER Unmodified 995.45599 0.45598972 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 2.5 0.5 1 1 47.777 47.777 2 0.0013366 14279 TMT1-2 142.79 96.817 261.71 348.23 262.89 303.67 281.13 332.03 247 348 276 297 293 319 2 2 2 2 2 2 53279 5543 479 5498 8836;8837 11529;11530 11530 2 FELFVMK Unmodified 912.47791 0.47791114 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 9 0 1 73.642 73.642 2 0.014103 21095 TMT1-8 105.12 68.56 184.07 285.34 201.06 182.13 255.85 256 174 283 210 182 261 247 2 2 2 2 2 2 10180 5544 1820 5499 8838 11531;11532 11531 2 FENAAAGNKPEAVEVTFADFDGVLYHISNPNGDK Unmodified 3635.7169 0.71685545 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 6 0 1 80.578 80.578 4 3.029E-15 26221 TMT1-5 82.554 67.392 37.95 58.071 64.738 43.016 64.76 36.528 36 58 65 44 65 36 1 1 1 1 1 1 7851.2 5545 129 5500 8839 11533 11533 1 FENAFLSHVVSQHQALLGTIR Unmodified 2366.2495 0.24951318 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 9 0 1 65.954 65.954 4 4.2928E-32 18038 TMT1-8 137.72 120.58 138.68 211.81 136.58 154.93 221.27 202.62 131 210 145 153 225 196 2 2 2 2 2 2 77602 5546 888 5501 8840 11534;11535 11534 2 FENLGVSSLGER Unmodified 1306.6517 0.65172941 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 5.67 0.471 1 2 57.342 57.342 2;3 9.9187E-17 16870 TMT1-4 153.25 105.59 154 165.2 125.85 116.77 133.81 150.75 145 167 131 116 138 145 2 2 2 2 2 2 40071 5547 3006 5502 8841;8842;8843 11536;11537;11538 11536 3 FENNELFAK Unmodified 1110.5346 0.53457439 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 2 58.449 58.449 2;3 0.023898 17438 TMT1-5 54.066 30.461 153.26 210.61 212.95 213.55 232.69 218.29 145 211 218 211 239 211 2 2 2 2 2 2 25889 5548 228 5503 8844;8845 11539;11540 11539 2 FEPYANPTK Unmodified 1065.5131 0.51311067 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 6 0 1 48.363 48.363 3 0.012366 13569 TMT1-5 64.04 30.296 84.465 100.39 145.95 100.82 104.69 136.66 80 102 145 102 109 131 1 1 1 1 1 1 7313.2 5549 1261 5504 8846 11541 11541 1 FEQEINAK Unmodified 977.48181 0.48181054 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 47.026 47.026 3 0.0022884 12829 TMT1-4 65.465 43.959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5550 325 5505 8847 11542 11542 1 FEQSASNFYQQQAEGHK Unmodified 1997.8868 0.88676774 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 5.67 0.471 1 2 48.194 48.194 3;4 3.2839E-19 13328 TMT1-4 137.27 115.12 743.24 1010.6 644.44 677.56 752.66 843.05 701 1007 683 668 777 811 3 3 3 3 3 3 130630 5551 2849 5506 8848;8849;8850 11543;11544;11545 11543 3 FESDPATHNEPGVR Unmodified 1554.7063 0.70628418 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 2 0 1 35.571 35.571 3 3.321E-05 9202 TMT1-1 91.024 59.676 38.146 66.172 24.852 53.058 64.005 45.078 36 65 29 51 65 44 1 1 1 1 1 1 10495 5552 2757 5507 8851 11546 11546 1 FESEILEAISQNSVVIIR Unmodified 2046.0997 0.09972063 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 7 0 1 90.741 90.741 3 0.00057652 29363 TMT1-6 63.46 44.627 7.2516 14.954 30.916 13.708 44.889 14.709 7 15 30 15 44 15 1 1 1 1 1 1 2287.1 5553 1619 5508 8852 11547 11547 1 FESFPAGSTLIFYK Unmodified 1605.8079 0.80789571 1963 Q5JTV8;Q5JTV8-3 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 0 9 0 2 77.305 77.305 2;3 0.00033922 22493 TMT1-8 84.169 53.482 138.92 181.16 123.16 133.07 147.41 189.81 131 181 130 131 153 182 2 2 2 2 2 2 32028 5554 1963 5509 8853;8854 11548;11549 11548 2 FESPEVAER Unmodified 1062.4982 0.49818889 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 2.5 0.5 1 1 42.164 42.164 2 0.0045747 11862 TMT1-1 99.136 65.047 337.69 520.71 331.72 290.68 346.44 579.61 319 516 349 290 363 553 3 3 3 3 3 3 55726 5555 1261 5510 8855;8856 11550;11551;11552 11550 3 FETVHQIHK Unmodified 1137.5931 0.59309232 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 6.5 0.5 1 1 36.975 36.975 4 2.5523E-05 8456 TMT1-6 147.51 114.42 410.45 725.98 551.99 477.74 511.96 809.41 389 717 572 476 537 773 2 2 2 2 2 2 33497 5556 1534 5511 8857;8858 11553;11554 11554 2 FEVGDIMLIR Unmodified 1191.6322 0.63217995 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 6.5 0.5 1 1 75.227 75.227 2 0.00033785 24076 TMT1-5 122.44 90.294 524.74 836.49 545.42 463.58 646.52 808.77 496 828 572 465 665 776 3 3 3 3 3 3 107420 5557 394 5512 8859;8860 11555;11556;11557 11555 3 FEVIEKPQA Unmodified 1059.5601 0.56006086 784 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 0 1 6 0 1 55.884 55.884 2 0.0013592 16472 TMT1-5 87.476 52.668 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5558 784 5513 8861 11558 11558 1 FEVIPQSIR Unmodified 1087.6026 0.60259438 2299 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 0 0 7 0 1 58.042 58.042 2 0.018686 16692 TMT1-6 78.556 44.479 84.537 154.56 88.081 88.171 88.796 159.5 80 152 94 87 94 152 1 1 1 1 1 1 13135 5559 2299 5514 8862 11559 11559 1 FEWELPLDEAQR Unmodified 1531.7307 0.73070802 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 4.67 0.471 1 2 73.483 73.483 2;3 2.8192E-08 23163 TMT1-4 138.25 106.83 131.58 151.93 118.77 126.11 124.69 190.45 124 153 124 124 131 182 4 4 4 4 4 4 47358 5560 2525 5515 8863;8864;8865 11560;11561;11562;11563 11561 4 FFADLLDYIK Unmodified 1243.6489 0.64887587 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 8.5 0.5 1 1 94.252 94.252 3 0.00040562 28883 TMT1-8 98.249 72.31 84.227 138.58 153.65 70.915 70.225 83.724 80 138 153 73 73 80 4 4 4 3 4 3 10429 5561 395 5516 8866;8867 11564;11565;11566;11567 11566 4 FFAGIVWQHVYEK Unmodified 1622.8245 0.82454882 977 P31749;P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase yes no 0 0 0 0 0 9 0 1 70.74 70.74 3 9.041E-05 19979 TMT1-8 91.858 64.743 68.951 94.474 53.392 75.152 77.375 83.072 65 94 58 73 80 80 1 1 1 1 1 1 7851.7 5562 977 5517 8868 11568 11568 1 FFALPYVDHFLR Unmodified 1523.7925 0.79252041 2694 Q9HD33-3;Q9HD33-2;Q9HD33 MRPL47 39S ribosomal protein L47, mitochondrial yes no 0 0 0 0 0 9 0 1 77.105 77.105 3 0.002313 22449 TMT1-8 65.695 42.777 46.745 42.96 42.13 59.817 56.658 36.759 44 44 44 58 58 36 1 1 1 1 1 1 6380.8 5563 2694 5518 8869 11569 11569 1 FFDANYDGK Unmodified 1075.4611 0.4610751 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 no no 0 0 0 0 0 6 0 1 57.744 57.744 2 0.0014236 17193 TMT1-5 119.68 105.01 169.33 188.96 234 156.98 209.93 164.57 160 192 234 160 213 160 1 1 1 1 1 1 20647 5564 1868 5519 8870 11570 11570 1 FFDANYDGKDYDPVAAR Unmodified 1962.8748 0.87480607 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 1 5 0 1 59.91 59.91 3 0.00014656 17860 TMT1-4 77.468 73.362 251.63 213.71 267.22 243.03 294.94 437.17 237 221 270 242 307 418 1 1 1 1 1 1 37964 5565 1868 5520 8871 11571 11571 1 FFDDPMLLELAK Unmodified 1437.7214 0.72138888 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 6 0 1 86.253 86.253 3 1.5315E-05 28354 TMT1-5 86.313 73.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5566 1816 5521 8872 11572 11572 1 FFDEESYSLLR Unmodified 1404.6561 0.65614609 1243 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 0 5.33 0.471 2 1 71.132 71.132 2;3 1.8947E-06 22278 TMT1-4 135.86 107.98 238.8 305.37 182.31 229.85 276.94 247.94 225 305 196 225 283 240 3 3 3 3 3 3 62642 5567 1243 5522 8873;8874;8875 11573;11574;11575 11574 3 FFDHSGTLVMDAYEPEISR Unmodified 2213.0099 0.0099193444 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 0 5 0 1 66.933 66.933 3 5.1148E-05 20665 TMT1-4 68.27 51.777 146.57 158.38 118.35 125.18 117.46 158.68 138 160 124 123 123 152 2 2 2 2 2 2 16800 5568 1808 5523 8876 11576;11577 11576 2 FFDTELENLER Unmodified 1411.662 0.66195975 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 4 0 1 70.608 70.608 2 2.6964E-06 22339 TMT1-3 129.69 111.59 100.56 123.03 127.18 149.8 116.82 174.69 95 124 131 146 124 167 2 2 2 2 2 2 27583 5569 325 5524 8877 11578;11579 11578 2 FFEDHENVVEVLSDWTR Unmodified 2120.9803 0.98033378 2099 Q7Z5R6 APBB1IP Amyloid beta A4 precursor protein-binding family B member 1-interacting protein yes yes 0 0 0 0 0 5.5 0.5 1 1 80.254 80.254 3 1.2635E-06 26033 TMT1-5 91.14 67.66 77.324 85.745 96.271 19.846 93 128.46 73 87 94 22 94 123 3 3 2 1 3 3 18443 5570 2099 5525 8878;8879 11580;11581;11582 11582 3 FFEGPVTGIFSGYVNSMLQEYAK Unmodified 2583.2356 0.23556218 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 9 0 2 99.338 99.338 3;4 4.8524E-07 30805 TMT1-8 68.369 50.274 23.046 60.506 42.858 22.535 34.788 53.373 22 59 44 22 36 51 2 2 2 1 3 3 3020.3 5571 1310 5526 8880;8881 11583;11584;11585 11585 3 FFEHFIEGGR Unmodified 1237.588 0.58800695 2405 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 0 7 0 1 59.022 59.022 3 0.0043862 17148 TMT1-6 74.533 52.195 257.02 339.85 337.38 173.64 275.06 438.8 243 341 339 182 285 419 2 2 2 2 2 2 22707 5572 2405 5527 8882 11586;11587 11587 2 FFEILSPVYR Unmodified 1269.6758 0.67575932 1594 Q05397-7;Q05397;Q05397-5;Q05397-2;Q05397-4;Q05397-3 PTK2 Focal adhesion kinase 1 yes no 0 0 0 0 0 9 0 1 76.774 76.774 2 0.019579 22333 TMT1-8 65.404 28.703 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5573 1594 5528 8883 11588 11588 1 FFENYNQSLEK Unmodified 1417.6514 0.65139506 2037 Q6PGP7 TTC37 Tetratricopeptide repeat protein 37 yes yes 0 0 0 0 0 6 0 1 60.142 60.142 3 0.0051882 18148 TMT1-5 49.448 26.569 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5574 2037 5529 8884 11589 11589 1 FFESFGDLSSPDAVMGNPK Unmodified 2043.9248 0.92479273 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 6.5 0.5 1 1 78.96 78.96 3;4 2.3167E-23 24892 TMT1-6 133.71 128.91 185.74 217.85 157.98 195.43 91.963 137.02 175 219 167 189 101 131 3 3 3 3 3 3 34434 5575 428 5530 8885;8886 11590;11591;11592 11591 3 FFESFGDLSSPDAVMGNPK Oxidation (M) 2059.9197 0.91970735 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 1 0 0 7 0 1 73.275 73.275 3 0.001118 22703 TMT1-6 60.307 57.209 30.727 35.641 35.383 28.629 51.019 29.458 29 36 36 29 51 29 1 1 1 1 1 1 5063.7 5576 428 5530 8887 11593 11593 46 1 FFESFGDLSTPDAVMGNPK Unmodified 2057.9404 0.9404428 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 5.89 2.77 2 2 2 2 1 79.59 79.59 3;4 1.3156E-30 25698 TMT1-5 146.1 137.6 3237.7 3766 2503.2 2296.7 942.35 2200 3049 3784 2632 2254 1074 2089 14 14 14 14 14 14 1235900 5577 1497 5531 8888;8889;8890;8891;8892;8893;8894;8895;8896 11594;11595;11596;11597;11598;11599;11600;11601;11602;11603;11604;11605;11606;11607;11608 11596 15 FFESFGDLSTPDAVMGNPK Oxidation (M) 2073.9354 0.93535742 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 1 0 0 6.8 0.4 1 4 75.808 75.808 3;4 6.5428E-17 23590 TMT1-5 118.31 103.05 1045.7 1193.8 685.56 736.67 443.43 691.97 984 1199 735 719 479 661 7 7 7 7 7 7 275790 5578 1497 5531 8897;8898;8899;8900;8901 11609;11610;11611;11612;11613;11614;11615 11609 242 7 FFETCDLDNDK Unmodified 1402.5711 0.57109583 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 4.5 0.5 1 1 61.036 61.036 2;3 3.2006E-05 18289 TMT1-4 110.08 89.847 160.8 210.18 208.45 120.17 156.43 157.57 152 211 210 124 160 152 2 2 2 2 2 2 16978 5579 590 5532 8902;8903 11616;11617 11617 2 FFETCDLDNDKYIALDEWAGCFGIK Unmodified 3026.3466 0.34664555 590 P09486 SPARC SPARC yes yes 0 0 0 0 1 7.25 0.433 3 1 88.631 88.631 3;4;5 7.738E-25 28506 TMT1-6 126.31 108.52 299.18 406.03 409.32 286.31 391.01 445.09 283 407 414 291 401 428 5 5 5 5 5 5 93107 5580 590 5533 8904;8905;8906;8907 11618;11619;11620;11621;11622 11618 5 FFETSAK Unmodified 828.40177 0.4017693 1372 P61026 RAB10 Ras-related protein Rab-10 no no 0 0 0 0 0 7 0 1 50.949 50.949 2 0.0082888 13868 TMT1-6 117.62 52.844 1443.3 1855 1472.9 1290.3 1348.4 1835.6 1362 1858 1524 1284 1406 1758 2 2 2 2 2 2 153620 5581 1372 5534 8908 11623;11624 11623 2 FFFDVGCNK Unmodified 1132.5012 0.50116577 2445 Q96QR8 PURB Transcriptional activator protein Pur-beta yes yes 0 0 0 0 0 9 0 1 68.445 68.445 2 0.021854 19059 TMT1-8 72.038 48.685 61.308 63.32 102.04 94.533 113.11 112.97 58 65 102 94 116 109 1 1 1 1 1 1 5686.2 5582 2445 5535 8909 11625 11625 1 FFFDVGSNK Unmodified 1059.5025 0.50254598 1539 Q00577 PURA Transcriptional activator protein Pur-alpha yes yes 0 0 0 0 0 9 0 1 68.117 68.117 3 0.00035782 18961 TMT1-8 108.74 69.721 84.356 154.05 118.89 101.63 147.29 204.73 80 152 123 102 152 196 1 1 1 1 1 1 13453 5583 1539 5536 8910 11626 11626 1 FFGDSAASMAIK Unmodified 1243.5907 0.59070906 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 8 0 1 65.148 65.148 3 0.00024798 19518 TMT1-7 90.653 56.275 54.018 73.084 56.543 34.931 55.677 98.615 51 73 58 36 58 94 1 1 1 1 1 1 13493 5584 3017 5537 8911 11627 11627 1 FFGGYVPEMVLTPDDQR Unmodified 1969.9244 0.9243988 1332 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 6 0 1 79.342 79.342 3 1.4147E-05 25693 TMT1-5 82.59 75.551 39.375 20.123 37.68 21.288 27.259 61.05 37 22 37 22 29 58 1 1 1 1 1 1 4352.7 5585 1332 5538 8912 11628 11628 1 FFGNLMDASK Unmodified 1128.5274 0.52738052 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 9 0 1 67.94 67.94 2 1.6636E-05 18850 TMT1-8 135.86 94.83 123.09 151.71 102.61 125.79 134.71 112.35 116 152 109 123 138 109 1 1 1 1 1 1 15203 5586 1043 5539 8913 11629 11629 1 FFGNSWAETYR Unmodified 1376.6149 0.61494998 176 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 0 0 8.5 0.5 1 1 63.489 63.489 2 0.0056022 18912 TMT1-7 85.821 61.045 160.78 243.6 182.29 152.19 221.69 194.08 152 242 189 153 225 188 2 2 2 2 2 2 39421 5587 176 5540 8914;8915 11630;11631 11630 2 FFHETEAPRPK Unmodified 1357.6779 0.67788459 1339 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 0 1 7 0 1 38.741 38.741 4 0.030746 9083 TMT1-6 51.092 27.974 84.757 116.31 83.504 72.365 130.1 105.02 80 116 87 73 131 102 1 1 1 1 1 1 3955.2 5588 1339 5541 8916 11632 11632 1 FFHLAFEEEFGR Unmodified 1527.7147 0.71466402 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 7 0 1 69.194 69.194 3 0.00060974 21156 TMT1-6 82.437 70.224 61.362 72.105 85.49 89.982 58.862 145.43 58 73 87 88 65 138 2 2 2 2 2 2 24664 5589 1695 5542 8917 11633;11634 11634 2 FFILYEHGLLR Unmodified 1406.7711 0.77105669 2051 Q6WCQ1-3;Q6WCQ1;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein yes no 0 0 0 0 0 9 0 1 69.631 69.631 3 0.00036428 19533 TMT1-8 80.102 43.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5590 2051 5543 8918 11635 11635 1 FFLEETLVR Unmodified 1152.6179 0.61791009 2805 Q9NZT2-2;Q9NZT2 OGFR Opioid growth factor receptor yes no 0 0 0 0 0 6 0 1 70.825 70.825 2 0.0020639 22358 TMT1-5 77.923 51.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5591 2805 5544 8919 11636 11636 1 FFLQDPQSQELDVQVK Unmodified 1919.9629 0.9628928 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6 0 2 71.999 71.999 3;4 1.6727E-05 22705 TMT1-5 86.548 66.167 283.81 400.53 291.1 301.88 286.41 332.95 268 399 305 297 298 320 3 3 3 3 3 3 149300 5592 2525 5545 8920;8921 11637;11638;11639 11637 3 FFLQGIQLNTILPDAR Unmodified 1845.0149 0.014868788 652 P11279;P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 yes no 0 0 0 0 0 9 0 1 86.507 86.507 3 1.0124E-31 26137 TMT1-8 176.43 150.87 61.219 103.01 83.358 96.234 81.866 137.31 58 102 87 94 87 131 2 2 2 2 2 2 68389 5593 652 5546 8922 11640;11641 11641 2 FFLSSGLIDKVDNFK Unmodified 1728.9087 0.90867238 2535 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 1 9 0 2 77.325 77.325 3;4 5.1474E-07 22550 TMT1-8 98.592 55.049 169.44 233.49 179.34 206.82 232.23 240.69 160 233 188 203 239 232 2 2 2 2 2 2 25501 5594 2535 5547 8923;8924 11642;11643 11643 2 FFMGNQVLK Unmodified 1082.5583 0.55828672 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 1 64.24 64.24 2 0.00015611 17397 TMT1-8 147.34 92.929 130.08 204.79 145.68 131.16 177.62 165.49 123 203 152 131 181 160 1 1 1 1 1 1 17941 5595 676 5548 8925 11644 11644 1 FFNIPFLQLQR Unmodified 1421.782 0.78195573 1931 Q3YEC7-2;Q3YEC7;Q3YEC7-3 RABL6 Rab-like protein 6 yes no 0 0 0 0 0 9 0 1 86.223 86.223 3 0.0064809 25944 TMT1-8 59.542 25.164 46.825 34.55 35.684 21.529 20.725 37.785 44 36 36 22 22 36 1 1 1 1 1 1 4502.8 5596 1931 5549 8926 11645 11645 1 FFNTLAGFANIDQETYR Unmodified 2005.9534 0.95339074 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 8 0 1 80.367 80.367 3 1.408E-07 25500 TMT1-7 98.165 81.982 46.774 34.408 44.384 20.745 34.87 53.371 44 36 44 22 36 51 1 1 1 1 1 1 7828.6 5597 1770 5550 8927 11646 11646 1 FFNVLTTNTDGK Unmodified 1355.6721 0.67213051 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 0 9 0 1 67.065 67.065 3 0.017437 18499 TMT1-8 47.712 24.336 53.619 110.83 91.548 72.737 84.815 82.86 51 109 94 73 87 80 1 1 1 1 1 1 7217.7 5598 2319 5551 8928 11647 11647 1 FFPASADR Unmodified 909.43447 0.43446642 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 7 0 1 48.58 48.58 2 2.4232E-12 12997 TMT1-6 184.89 129.29 568.18 1206.1 1047.7 855.35 1063.4 1120.9 541 1186 1073 858 1091 1080 2 2 2 2 2 2 96242 5599 530 5552 8929 11648;11649 11649 2 FFPEDVSEELIQEITQR Unmodified 2079.0161 0.01605058 1015 P35241;P35241-5;P35241-3 RDX Radixin yes no 0 0 0 0 0 4.5 0.5 1 1 93.086 93.086 3 4.0943E-10 30731 TMT1-4 112.34 85.53 27.706 21.302 14.248 22.788 28.803 14.102 26 22 15 22 29 14 2 2 1 1 2 2 6035.5 5600 1015 5553 8930;8931 11650;11651 11651 2 FFPFGLVQLSSDLSK Unmodified 1683.8872 0.88720866 2671 Q9HAT2-2;Q9HAT2 SIAE Sialate O-acetylesterase yes no 0 0 0 0 0 9 0 1 92.025 92.025 3 3.9652E-11 28137 TMT1-8 114.56 85.757 122.89 175.96 116.62 118.81 112.79 120.44 116 175 123 117 117 116 3 3 3 3 3 3 10721 5601 2671 5554 8932 11652;11653;11654 11653 3 FFPLESWQIGK Unmodified 1350.6972 0.69722304 948 P30046 DDT D-dopachrome decarboxylase yes yes 0 0 0 0 0 9 0 2 79.249 79.249 3 5.0832E-07 23203 TMT1-8 107.24 79.835 254.42 364.46 212.55 271.12 253.11 429.84 240 362 229 264 268 410 2 2 2 2 2 2 50210 5602 948 5555 8933;8934 11655;11656;11657 11657 3 FFPYSSADAS Unmodified 1090.4607 0.46074075 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 68.471 68.471 2 0.033071 21227 TMT1-4 69.176 56.95 23.256 36.266 28.131 21.404 51.351 29.449 22 36 29 22 51 29 1 1 1 1 1 1 3134.8 5603 325 5556 8935 11658 11658 1 FFPYYVYNIIGGLDEEGK Unmodified 2123.0252 0.025158703 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 8 0 1 95.039 95.039 3 3.0096E-10 30932 TMT1-7 108.34 93.409 39.076 65.699 49.414 36.568 49.335 67.882 37 65 51 37 51 65 2 2 2 2 2 2 7395.6 5604 813 5557 8936 11659;11660 11659 2 FFQELPGSDPVFK Unmodified 1509.7504 0.75038083 2031 Q6P996-2;Q6P474;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 yes no 0 0 0 0 0 7 0 1 73.369 73.369 3 0.0027776 22720 TMT1-6 66.285 56.752 37.97 81.87 41.237 28.448 42.086 76.617 36 80 44 29 44 73 1 1 1 1 1 1 8947.3 5605 2031 5558 8937 11661 11661 1 FFQPTEMAAQDFFQR Unmodified 1861.8458 0.84575455 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 8 0 1 76.821 76.821 3 0.012311 24150 TMT1-7 51.193 40.559 38.21 51.239 26.813 29.15 50.446 45.465 36 51 29 29 51 44 1 1 1 1 1 1 5874.3 5606 369 5559 8938 11662 11662 1 FFQSFSDALIDEDPQAALEELTK Unmodified 2613.2486 0.24862929 2979 Q9Y2Z0-2;Q9Y2Z0 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 0 6 0 1 96.716 96.716 3 1.9022E-06 32052 TMT1-5 57.829 57.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5607 2979 5560 8939 11663 11663 1 FFSEYEK Unmodified 948.4229 0.42289868 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 6 0 1 55.891 55.891 2 0.019116 16467 TMT1-5 98.299 58.031 153.31 216.16 199.21 150.26 212.89 148.5 145 216 203 152 215 145 1 1 1 1 1 1 15718 5608 2985 5561 8940 11664 11664 1 FFSPLQK Unmodified 865.46979 0.46978929 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 61.186 61.186 3 0.0081176 16153 TMT1-8 79.454 51.347 92.503 77.6 76.719 105.92 52.926 83.77 87 80 80 102 58 80 1 1 1 1 1 1 6595.3 5609 1900 5562 8941 11665 11665 1 FFTFDSPAELPSR Unmodified 1512.7249 0.72489436 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 7 0 2 71.153 71.153 2;3 5.9055E-17 21860 TMT1-6 175.48 170.43 68.793 86.479 86.753 41.427 79.475 67.022 65 87 87 44 80 65 1 1 1 1 1 1 14811 5610 2779 5563 8942;8943 11666;11667 11666 2 FFTGQITAAGK Unmodified 1139.5975 0.597509 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 59.419 59.419 2 5.9917E-11 15474 TMT1-8 158.41 115.16 146.49 197.01 99.375 134.78 131.66 189.19 138 196 109 131 138 181 1 1 1 1 1 1 18823 5611 1702 5564 8944 11668 11668 1 FFVAPFPEVFGK Unmodified 1383.7227 0.72270951 26 CON__P02662 yes yes 0 0 0 0 0 9 0 2 86.045 86.045 2;3 1.3795E-07 25886 TMT1-8 132.01 99.656 138.83 252.16 76.84 57.162 87.848 15.376 131 247 88 58 87 15 2 2 2 2 2 1 23955 + 5612 26 5565 8945;8946 11669;11670 11669 2 FFVGGNWK Unmodified 953.47594 0.4759373 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 9 0 1 64.635 64.635 2 0.00054103 17598 TMT1-8 155.19 94.228 1830 2405 2016.6 1732.6 2255.5 2879.9 1728 2408 2077 1734 2327 2762 3 3 3 3 3 3 404690 5613 1352 5566 8947 11671;11672;11673 11672 3 FFVSSSQGR Unmodified 1013.493 0.49304393 1024 P35613-2;P35613;P35613-3;P35613-4 BSG Basigin yes no 0 0 0 0 0 9 0 1 46.396 46.396 2 1.3952E-06 10324 TMT1-8 167.04 103.74 99.804 131.55 66.278 96.804 105.68 113.18 94 131 73 94 109 109 1 1 1 1 1 1 14154 5614 1024 5567 8948 11674 11674 1 FFWGNAETLK Unmodified 1211.5975 0.597509 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 9 0 1 69.015 69.015 2 0.00027901 19318 TMT1-8 125.48 55.655 30.771 35.765 27.787 28.954 57.784 45.255 29 36 29 29 58 44 1 1 1 1 1 1 7363.7 5615 208 5568 8949 11675 11675 1 FFYAGTPPAGLAADSHVK Unmodified 1847.9206 0.92063405 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 8 0 2 59.469 59.469 3;4 7.7456E-08 17350 TMT1-7 95.767 71.479 221.96 335.7 281.47 247.92 280.22 341.65 210 334 290 247 290 328 2 2 2 2 2 2 45307 5616 333 5569 8950;8951 11676;11677 11676 2 FFYSDQNVDSR Unmodified 1376.5997 0.59969384 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 5.5 0.5 1 1 52.904 52.904 2 1.2328E-53 15244 TMT1-4 230.61 195.44 376.97 488.76 429.81 337.8 494.12 480.52 356 490 440 341 503 464 3 3 3 3 3 3 159160 5617 3010;3014 5570 8952;8953 11678;11679;11680 11679 3 FFYSDQNVDSRDPVQLNLLYVQAR Unmodified 2886.4301 0.43005633 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 7.33 0.471 2 1 75.071 75.071 4 3.4903E-38 23195 TMT1-6 154.07 146.8 331.29 412.25 417.17 292.54 383.68 376.01 313 415 422 297 392 363 5 5 5 5 5 5 244940 5618 3010;3014 5571 8954;8955;8956 11681;11682;11683;11684;11685 11682 5 FGAALTVLGDVNGDKLTDVAIGAPGEEDNR Unmodified 3013.4993 0.4992581 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 1 5 0 1 82.681 82.681 4 0.00059448 26826 TMT1-4 42.121 29.808 23.218 44.795 27.257 29.552 27.686 37.586 22 44 29 29 29 36 1 1 1 1 1 1 4020.9 5619 647 5572 8957 11686 11686 1 FGANAILGVSLAVCK Unmodified 1518.8228 0.82283426 514;581 P06733;P06733-2;P09104;P09104-2;P13929-3;P13929-2;P13929 ENO1;ENO2;ENO3 Alpha-enolase;Gamma-enolase;Beta-enolase no no 0 0 0 0 0 9 0 9 78.71 78.71 2;3;4 7.1591E-23 21964 TMT1-8 152 122.37 1074.3 1505.5 1397.3 1071.5 1188.5 1697.3 1016 1505 1424 1077 1239 1624 15 15 15 15 15 15 149240 5620 514;581 5573 8958;8959;8960;8961;8962;8963;8964;8965;8966 11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702;11703 11689 17 FGAPPHAGGGIGLER Unmodified 1434.7368 0.73679645 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 44.406 44.406 3 2.0512E-05 11315 TMT1-6 90.707 61.36 108.01 145.01 118.94 109.95 111.34 143.93 102 145 123 109 116 138 1 1 1 1 1 1 13881 5621 714 5574 8967 11704 11704 1 FGAQNEEMLPSILVLLK Unmodified 1901.0332 0.033220969 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 8.5 0.5 1 1 92.323 92.323 3 6.9617E-08 28193 TMT1-8 83.54 62.289 23.097 59.569 35.012 29.898 42.825 53.144 22 58 37 30 44 51 2 2 2 2 2 2 7240.6 5622 3047 5575 8968;8969 11705;11706 11706 2 FGATLEIVTDK Unmodified 1192.634 0.63395408 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 6 0 1 67.431 67.431 2 1.347E-06 21015 TMT1-5 140.07 89.166 68.938 48.029 94.88 80.778 53.569 98.675 65 51 94 80 58 94 1 1 1 1 1 1 9334.3 5623 1439 5576 8970 11707 11707 1 FGAVFLWDSGSSVGEITGHNK Unmodified 2207.0647 0.064732107 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 8.33 0.471 2 1 72.422 72.422 3;4 7.6475E-26 20666 TMT1-8 134.4 113.75 314.85 505.21 396.08 278.29 452.63 397.49 298 501 407 284 458 385 5 5 5 5 5 5 206810 5624 250 5577 8971;8972;8973 11708;11709;11710;11711;11712 11712 5 FGAVWTGDNTAEWDHLK Unmodified 1945.8959 0.89587586 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 6.33 0.471 2 1 66.408 66.408 3;4 1.8216E-25 19977 TMT1-6 153.95 118.29 353.6 482.39 395.49 293.57 455.85 435.78 334 482 406 298 463 421 4 4 4 4 4 4 82997 5625 1792 5578 8974;8975;8976 11713;11714;11715;11716 11715 4 FGCFQWYYPELAFQFK Unmodified 2129.971 0.97095506 296 O75695 RP2 Protein XRP2 yes yes 0 0 0 0 0 9 0 1 91.144 91.144 3 4.2517E-06 27879 TMT1-8 82.651 64.513 23.071 67.05 33.177 36.718 34.685 37.386 22 65 36 36 36 36 1 1 1 1 1 1 7766.1 5626 296 5579 8977 11717 11717 1 FGDEFLGELR Unmodified 1181.5717 0.57168818 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 1 68.673 68.673 2 0.00042429 21387 TMT1-4 118.18 67.571 131.12 180.88 171.34 121.58 140.86 182.53 124 181 174 123 146 175 2 2 2 2 2 2 35228 5627 1786 5580 8978 11718;11719 11719 2 FGDLDEQEFVYKEPAITK Unmodified 2128.0365 0.036451671 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50;Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67 DOCK8;DOCK7 Dedicator of cytokinesis protein 8;Dedicator of cytokinesis protein 7 yes no 0 0 0 0 1 6 0 1 66.448 66.448 4 0.013032 20667 TMT1-5 46.131 29.825 69.122 56.097 57.099 43.615 57.11 45.274 65 58 58 44 58 44 1 1 1 1 1 1 7443.1 5628 2223 5581 8979 11720 11720 1 FGDLILK Unmodified 804.47454 0.47454032 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 66.983 66.983 2 0.010436 20281 TMT1-7 108.09 71.066 138.72 170.91 164.32 121.73 155.22 190.65 131 172 167 123 160 183 1 1 1 1 1 1 13677 5629 2028 5582 8980 11721 11721 1 FGDPECQVILPLLK Unmodified 1627.8644 0.86436473 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 7.5 0.5 1 1 80.785 80.785 3 0.00017098 25652 TMT1-7 80.3 61.704 46.626 57.74 49.533 43.77 72.808 44.826 44 58 51 44 73 44 1 1 1 1 1 1 6192.5 5630 842 5583 8981;8982 11722;11723 11723 2 FGDPLGYEDVIPEADREGVIR Unmodified 2346.1492 0.14919002 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 1 3.5 0.5 1 1 69.096 69.096 3 5.0267E-10 21718 TMT1-3 94.632 71.758 69.882 94.005 77.674 64.947 78.101 75.589 66 94 80 65 80 73 2 2 2 2 2 2 20653 5631 647 5584 8983;8984 11724;11725 11725 2 FGDPVVQSDMK Unmodified 1221.57 0.56997362 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 5 0 2 54.502 54.502 2;3 5.4681E-06 15789 TMT1-4 128.01 99.841 160.35 317.95 191.88 176.89 156.86 282.28 152 312 203 175 167 269 2 2 2 2 2 2 37530 5632 618 5585 8985;8986 11726;11727 11727 2 FGDRFPAMSDAYDR Unmodified 1646.7147 0.71474038 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 1 5 0 1 53.152 53.152 3 0.0049064 15202 TMT1-4 64.407 57.836 92.036 146.45 96.868 95.285 89.532 128.56 87 145 102 94 94 123 1 1 1 1 1 1 31474 5633 394 5586 8987 11728 11728 1 FGEEIAR Unmodified 820.40792 0.40791731 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 3 0 1 41.962 41.962 2 0.0038371 12086 TMT1-2 85.359 59.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5634 2267 5587 8988 11729 11729 1 FGEENIEVYHSYFWPLEWTIPSR Unmodified 2898.3653 0.3653308 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 0 8 0 1 86.637 86.637 3 4.9709E-05 27829 TMT1-7 53.266 46.762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5635 1912 5588 8989 11730 11730 1 FGELVMTK Unmodified 923.47864 0.47863942 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 8 0 1 61.388 61.388 2 0.016047 18075 TMT1-7 91.853 50.201 146.47 168.9 126.03 108.74 153.18 267.46 138 170 131 109 160 255 1 1 1 1 1 1 15667 5636 1076 5589 8990 11731 11731 1 FGEVVDCTLK Unmodified 1166.5642 0.56415996 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 5.75 0.433 1 3 60.006 60.006 2;3 7.2701E-05 18029 TMT1-5 142.43 0 555.62 794.83 621.84 597.99 696.22 826.54 525 792 646 593 719 794 4 4 4 4 4 4 141580 5637 1748 5590 8991;8992;8993;8994 11732;11733;11734;11735;11736 11734 5 FGFAIGSQTTK Unmodified 1155.5924 0.59242362 2275 Q8WW12-2;Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein yes no 0 0 0 0 0 9 0 1 59.236 59.236 2 0.020684 15423 TMT1-8 61.78 36.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5638 2275 5591 8995 11737 11737 1 FGFDPFISTNIQYFLDR Unmodified 2079.0102 0.010177341 1830 Q15120;Q15120-2 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes no 0 0 0 0 0 9 0 1 93.803 93.803 3 0.00014387 28843 TMT1-8 62.525 44.824 30.972 28.768 0 31.163 28.365 46.095 29 29 0 29 30 44 1 1 0 1 1 1 3239.5 5639 1830 5592 8996 11738 11738 1 FGFEIIETK Unmodified 1082.5648 0.56481189 2604 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 0 0 7 0 1 69.913 69.913 2 0.01314 21349 TMT1-6 84.615 44.346 37.734 96.324 68.661 97.775 46.521 67.963 36 94 73 94 51 65 1 1 1 1 1 1 4419.7 5640 2604 5593 8997 11739 11739 1 FGFIVIDGSGALFGTLQGNTR Unmodified 2169.1219 0.12185306 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 9 0 1 89.869 89.869 3 3.0223E-09 27353 TMT1-8 80.362 56.727 46.618 57.716 50.974 11.442 43.674 53.12 44 58 51 14 44 51 2 2 2 2 2 2 6816.4 5641 1439 5594 8998 11740;11741 11740 2 FGFNEFSSLK Unmodified 1174.5659 0.56587452 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 8.33 0.471 2 1 68.312 68.312 2;3 0.0015341 20817 TMT1-7 87.298 72.198 145.45 179.01 288.96 153.78 206.17 187.06 138 182 284 160 210 181 3 3 3 3 3 3 23291 5642 2922 5595 8999;9000;9001 11742;11743;11744 11742 3 FGFPAFSGISR Unmodified 1184.5978 0.59784335 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 9 0 1 69.098 69.098 2 0.0070655 19361 TMT1-8 76.572 36.369 161.22 228.62 122.04 116.21 175.7 241.23 152 227 131 116 181 231 1 1 1 1 1 1 23587 5643 1279 5596 9002 11745 11745 1 FGFPEGSVELYAEK Unmodified 1571.7508 0.75077476 861 P23396 RPS3 40S ribosomal protein S3 yes yes 0 0 0 0 0 6 0 1 70.302 70.302 2 1.614E-09 22114 TMT1-5 118.48 84.523 30.469 82.412 39.105 76.437 54.281 83.731 29 80 44 73 58 80 1 1 1 1 1 1 17206 5644 861 5597 9003 11746 11746 1 FGGAAVFPNQEQAR Unmodified 1490.7266 0.72662569 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 7 0 1 52.072 52.072 2 5.5492E-18 14364 TMT1-6 156.58 110.61 54.128 49.645 57.959 34.694 63.786 75.998 51 51 58 36 65 73 1 1 1 1 1 1 17647 5645 800 5598 9004 11747 11747 1 FGGALDAAAK Unmodified 919.47633 0.47633123 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 6 0 1 51.542 51.542 2 0.00076161 14751 TMT1-5 107.57 57.859 107.51 222.4 137.53 122.78 184.07 232.47 102 218 145 123 189 223 1 1 1 1 1 1 14961 5646 1283 5599 9005 11748 11748 1 FGGEHVPNSPFQVTALAGDQPSVQPPLR Unmodified 2944.4832 0.48315453 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.31 1 1 3 1 66.291 66.291 3;4;5 4.9817E-77 19920 TMT1-6 201.31 194.44 1245.9 1402 1488.2 1215.5 1381.9 1721.6 1176 1420 1509 1217 1431 1652 11 11 11 11 11 11 538630 5647 831 5600 9006;9007;9008;9009;9010;9011 11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759 11756 11 FGGGNPELLTQMVSK Unmodified 1576.7919 0.79192806 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 8 0 1 68.892 68.892 3 6.8172E-05 21006 TMT1-7 84.508 27.858 108.13 130.23 111.17 134.37 116.23 182.17 102 131 116 131 123 174 1 1 1 1 1 1 45329 5648 1076 5601 9012 11760 11760 1 FGGNPGGFGNQGGFGNSR Unmodified 1725.7608 0.76077937 1674 Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 0 8 0 1 51.441 51.441 3 7.0349E-06 14175 TMT1-7 81.618 62.785 61.58 64.078 55.618 66.972 40.315 76.668 58 65 58 65 44 73 1 1 1 1 1 1 10235 5649 1674 5602 9013 11761 11761 1 FGGSGSQVDSAR Unmodified 1166.5316 0.53161428 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 4.5 0.5 1 1 34.115 34.115 2 1.7063E-07 7704 TMT1-4 127.51 106.14 54.384 34.168 28.081 21.845 28.04 37.576 51 36 29 22 29 36 1 1 1 1 1 1 5485 5650 1683 5603 9014;9015 11762;11763 11763 2 FGHTFCK Unmodified 895.40106 0.4010578 1539 Q00577 PURA Transcriptional activator protein Pur-alpha yes yes 0 0 0 0 0 9 0 1 40.355 40.355 3 0.0047287 8218 TMT1-8 88.643 45.616 122.17 260.33 164.85 161.31 198.85 268.29 116 255 174 160 206 257 1 1 1 1 1 1 11741 5651 1539 5604 9016 11764 11764 1 FGIAVLGYLNR Unmodified 1221.687 0.68699271 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 75.75 75.75 2 2.3287E-08 21922 TMT1-8 143.61 92.712 130.41 159.3 128.14 75.981 203.19 164.76 123 160 131 80 203 160 1 1 1 1 1 1 23158 5652 758 5605 9017 11765 11765 1 FGIDDQDFQNSLTR Unmodified 1654.7587 0.75871368 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 5 0 2 63.833 63.833 2;3 5.7562E-86 19396 TMT1-4 223.08 198.99 37.723 96.295 70.447 57.725 78.176 83.049 36 94 73 58 80 80 1 1 1 1 1 1 58938 5653 1152;1153 5606 9018;9019 11766;11767 11767 2 FGIEPNAELIYEVTLK Unmodified 1834.9717 0.97166657 1706 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 0 0 6.5 0.5 1 1 84.034 84.034 3 4.2385E-07 27496 TMT1-5 101.39 83.897 162.71 188.7 84.991 126.98 127.03 121.1 153 189 95 123 131 117 3 3 3 3 3 3 18413 5654 1706 5607 9020;9021 11768;11769;11770 11768 3 FGIGDGNLQYYLYNWK Unmodified 1949.9312 0.93119874 959 P30419-2;P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 0 0 9 0 1 83.516 83.516 3 1.0082E-11 24921 TMT1-8 115.91 90.743 46.751 42.977 41.047 84.097 47.663 53.006 44 44 44 80 51 51 1 1 1 1 1 1 11176 5655 959 5608 9022 11771 11771 1 FGIHPVAGR Unmodified 952.52428 0.52428448 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8 0 1 37.466 37.466 3 0.0025544 8614 TMT1-7 84.568 59.645 92.424 77.38 90.2 143.66 95.39 136.92 87 80 94 138 102 131 1 1 1 1 1 1 10616 5656 1702 5609 9023 11772 11772 1 FGILTEK Unmodified 806.4538 0.45380487 1882 Q16134-3;Q16134 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes no 0 0 0 0 0 8 0 1 59.241 59.241 2 0.032499 17238 TMT1-7 89.55 42.984 91.839 138.35 136.79 84.517 128.77 127.44 87 138 138 87 131 123 1 1 1 1 1 1 8968.6 5657 1882 5610 9024 11773 11773 1 FGIVTSSAGTGTTEDTEAK Unmodified 1870.8796 0.87961668 1515 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 0 5 0 1 54.373 54.373 3 1.8813E-30 15733 TMT1-4 142.39 123.79 53.847 80.164 79.258 49.842 62.577 90.956 51 80 80 51 65 87 1 1 1 1 1 1 12976 5658 1515 5611 9025 11774 11774 1 FGIYDIDNK Unmodified 1083.5237 0.52367535 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 6 0 1 62.039 62.039 2 0.013432 18888 TMT1-5 84.213 37.015 107.94 129.71 143.41 115.58 141.45 143.07 102 131 145 116 145 138 1 1 1 1 1 1 9586.7 5659 2495 5612 9026 11775 11775 1 FGLALAVAGGVVNSALYNVDAGHR Unmodified 2370.2444 0.24442781 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 9 0 1 87.274 87.274 3 5.8559E-48 26333 TMT1-8 154.56 135.23 31.919 36.979 14.149 22.376 43.941 30.726 30 37 15 22 44 30 2 2 1 2 2 2 20937 5660 1012 5613 9027 11776;11777 11776 2 FGLEGCEVLIPALK Unmodified 1544.8273 0.82725094 1566 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 78.393 78.393 3 2.26E-06 24674 TMT1-6 82.543 59.307 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5661 1566 5614 9028 11778 11778 1 FGLGSVAGAVGATAVYPIDLVK Unmodified 2104.1568 0.15684158 2886 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 0 9 0 1 85.471 85.471 3 1.0903E-14 25705 TMT1-8 94.45 75.239 15.779 29.32 28.219 29.632 20.353 37.795 15 29 29 29 22 36 1 1 1 1 1 1 3825.9 5662 2886 5615 9029 11779 11779 1 FGLIQSMK Unmodified 922.49462 0.49462383 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 0 9 0 1 62.377 62.377 2 0.0036397 16663 TMT1-8 114.28 77.253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5663 1292 5616 9030 11780 11780 1 FGLLNIVMEPFFK Unmodified 1553.8316 0.83160804 135 O15228-2;O15228 GNPAT Dihydroxyacetone phosphate acyltransferase yes no 0 0 0 0 0 9 0 1 100.09 100.09 2 0.0081481 31092 TMT1-8 65.347 48.773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5664 135 5617 9031 11781 11781 1 FGLNTVLTTDNSDLFINSIGIVPSVR Unmodified 2791.4756 0.47560953 2865 Q9UHG3-2;Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 yes no 0 0 0 0 0 9 0 1 91.761 91.761 4 1.3094E-08 28033 TMT1-8 63.272 50.331 15.982 22.33 0 23.644 21.398 15.379 15 22 0 22 22 15 1 1 0 1 1 1 5963.6 5665 2865 5618 9032 11782 11782 1 FGLNVSSISR Unmodified 1078.5771 0.57710791 1515 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 0 9 0 1 55.504 55.504 2 0.0047359 13935 TMT1-8 92.538 44.115 61.442 63.694 79.143 73.769 69.303 106.75 58 65 80 73 73 102 1 1 1 1 1 1 5795.9 5666 1515 5619 9033 11783 11783 1 FGLSAAEDITPR Unmodified 1275.6459 0.64591575 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 5 0 1 58.416 58.416 2 7.2608E-07 17262 TMT1-4 118.23 105.28 61.021 133.76 90.521 64.072 83.894 121.26 58 131 94 65 87 116 1 1 1 1 1 1 15943 5667 2539 5620 9034 11784 11784 1 FGMFEFLSNHMR Unmodified 1514.6799 0.6798752 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 71.111 71.111 3 0.0029572 20100 TMT1-8 62.924 39.548 30.664 59.209 26.023 36.987 43.049 37.148 29 58 29 36 44 36 1 1 1 1 1 1 2969.2 5668 1280 5621 9035 11785 11785 1 FGMTPSK Unmodified 766.36836 0.36836069 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 8 0 1 46.14 46.14 2 0.0291 12045 TMT1-7 91.065 44.499 146.23 199.53 140.08 92.094 122.23 307.78 138 199 145 94 131 292 1 1 1 1 1 1 14923 5669 1311 5622 9036 11786 11786 1 FGNEVIPVTVTVK Unmodified 1401.7868 0.78676633 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 8 0 1 66.691 66.691 3 5.2981E-06 20167 TMT1-7 108.97 80.244 61.264 110.69 69.164 64.469 130.46 105.01 58 109 73 65 131 102 1 1 1 1 1 1 13375 5670 878 5623 9037 11787 11787 1 FGNPLLVQDVESYDPVLNPVLNR Unmodified 2597.349 0.34895246 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 86.654 86.654 3 7.8108E-05 27826 TMT1-6 61.361 53.174 38.226 27.54 44.144 36.335 20.301 30.335 36 29 44 36 22 29 1 1 1 1 1 1 6520.8 5671 1763 5624 9038 11788 11788 1 FGPALSVK Unmodified 817.46979 0.46978929 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 0 9 0 1 54.934 54.934 2 0.0073044 13677 TMT1-8 113.14 16.103 223.95 371.81 277.81 257.06 154.65 361.22 212 368 289 253 171 343 1 1 1 1 1 1 32365 5672 662;2634 5625 9039 11789 11789 1 FGPHLVPILVEK Unmodified 1347.7915 0.79145778 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 9 0 1 63.977 63.977 3 0.00029728 17277 TMT1-8 85.813 56.045 99.861 139.26 50.256 81.735 144.07 112.08 94 138 58 80 145 109 1 1 1 1 1 1 24606 5673 1095 5626 9040 11790 11790 1 FGPIPLGSLGWK Unmodified 1270.7074 0.7073938 1906 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 0 9 0 1 78.45 78.45 2 1.6281E-11 22963 TMT1-8 157.66 116.68 68.43 148.07 95.486 126.81 103.24 144.16 65 145 102 123 109 138 1 1 1 1 1 1 16158 5674 1906 5627 9041 11791 11791 1 FGPVVAPK Unmodified 813.47487 0.47487467 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 0 9 0 1 51.847 51.847 2 0.0068849 12595 TMT1-8 100.82 39.86 358.15 452.59 377.59 443.47 387.98 505.94 338 454 394 433 407 485 2 2 2 2 2 2 105400 5675 1881 5628 9042 11792;11793 11793 2 FGPVVAPKPK Unmodified 1038.6226 0.62260154 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 1 9 0 1 47.864 47.864 3 0.00037998 10928 TMT1-8 102.61 77.817 3953.1 5640.9 3300.7 3745.8 2961.6 5577 3729 5604 3536 3658 3179 5311 2 2 2 2 2 2 261140 5676 1881 5629 9043 11794;11795 11794 2 FGPYYTEPVIAGLDPK Unmodified 1765.8927 0.89268797 1191 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 0 6.5 0.5 2 2 73.605 73.605 2;3 3.5559E-11 22814 TMT1-6 125.24 95.436 176.57 270.79 210.31 164.89 271.54 279.01 167 269 217 167 276 269 4 4 4 4 4 4 75509 5677 1191 5630 9044;9045;9046;9047 11796;11797;11798;11799 11799 4 FGQDFSTFLEAGVEMAGQAPSQEDR Oxidation (M) 2732.2024 0.20242415 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 5.5 0.5 3 3 80.927 80.927 3;4 1.1665E-18 26052 TMT1-4 107.03 101.75 166.11 245.3 186.51 176.13 133.03 252.04 157 244 194 172 142 240 7 7 7 6 6 7 53175 5678 3010 5631 9048;9049;9050;9051;9052;9053 11800;11801;11802;11803;11804;11805;11806 11801 332 7 FGQDFSTFLEAGVEMAGQAPSQEDR Unmodified 2716.2075 0.20750953 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 0.603 2 7 2 88.804 88.804 3;4 1.9115E-57 29423 TMT1-5 181.65 169.91 313.11 356.28 274.25 250.05 317.69 374.69 295 359 283 248 327 360 14 14 13 13 14 14 145120 5679 3010 5631 9054;9055;9056;9057;9058;9059;9060;9061;9062;9063;9064 11807;11808;11809;11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825 11817 19 FGQDIISPLLSVK Unmodified 1415.8024 0.8024164 2273 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 78.682 78.682 3 0.00018281 23025 TMT1-8 85.837 60.451 46.359 64.553 88.576 32.577 79.333 83.016 44 65 87 36 80 80 1 1 1 1 1 1 11414 5680 2273 5632 9065 11826 11826 1 FGQGGAGPVGGQGPR Unmodified 1340.6585 0.65854613 857 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 0 0 0 7 0 1 39.91 39.91 3 2.8174E-08 9533 TMT1-6 114.56 96.754 77.306 133.19 58.993 66.366 61.817 90.978 73 131 65 65 65 87 1 1 1 1 1 1 13532 5681 857 5633 9066 11827 11827 1 FGQVYTEAK Unmodified 1041.5131 0.51311067 1141 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 0 6 0 1 49.176 49.176 2 0.0019468 13846 TMT1-5 109.66 67.68 99.116 199.79 124.06 116.6 148.73 142.86 94 196 131 116 152 138 1 1 1 1 1 1 12756 5682 1141 5634 9067 11828 11828 1 FGSAIAPLGDLDR Unmodified 1330.6881 0.68811492 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6 0 1 66.303 66.303 2 5.9174E-47 20549 TMT1-5 221.32 169.46 550.48 558.22 602.93 467.53 777.19 714.43 519 569 610 474 787 691 2 2 2 2 2 2 131830 5683 565 5635 9068 11829;11830 11829 2 FGSAIAPLGDLDRDGYNDIAVAAPYGGPSGR Unmodified 3091.4999 0.4999268 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 6 0.632 1 3 1 72.382 72.382 3;4;5 1.4033E-26 23022 TMT1-5 111.03 100.52 585.85 773.86 608.6 507.26 680.94 600.98 553 774 629 509 693 582 6 6 6 6 6 6 596440 5684 565 5636 9069;9070;9071;9072;9073 11831;11832;11833;11834;11835;11836;11837 11834 7 FGSAIPIPSLPDK Unmodified 1340.734 0.73400248 3037 Q9Y5X1 SNX9 Sorting nexin-9 yes yes 0 0 0 0 0 8 0 1 72.178 72.178 3 0.00010211 22330 TMT1-7 91.858 59.36 38.033 58.302 50.585 20.375 34.887 53.37 36 58 51 22 36 51 1 1 1 1 1 1 6778.4 5685 3037 5637 9074 11838 11838 1 FGSCQQGVAATFTK Unmodified 1500.7031 0.70311306 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 8 0 2 54.623 54.623 2;3 1.7904E-13 15432 TMT1-7 121.56 88.612 139.49 105.04 91.454 72.911 75.902 128.95 131 109 94 73 80 123 1 1 1 1 1 1 40647 5686 856 5638 9075;9076 11839;11840 11840 2 FGSNINLEADES Unmodified 1294.5677 0.56772501 2713 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 0 0 2 0 1 63.005 63.005 2 0.0074504 19947 TMT1-1 76.228 69.375 15.982 22.33 0 16.282 6.0309 15.818 15 22 0 15 7 15 1 1 0 1 1 1 7344.3 5687 2713 5639 9077 11841 11841 1 FGSYCPTTCGIADFLSTYQTK Unmodified 2416.0715 0.071533323 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 6.75 3.34 1 1 2 80.417 80.417 3;4 5.4441E-16 23636 TMT1-8 107.45 80.179 1521 2275.8 1760.5 1449.5 2025.5 2526.2 1438 2263 1820 1457 2083 2424 5 5 5 5 5 5 411010 5688 439 5640 9078;9079;9080;9081 11842;11843;11844;11845;11846 11845 5 FGTLLSGSWDTTAK Unmodified 1482.7355 0.73545904 2954 Q9Y263 PLAA Phospholipase A-2-activating protein yes yes 0 0 0 0 0 9 0 1 71.619 71.619 3 0.00010802 20314 TMT1-8 76.728 48.867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5689 2954 5641 9082 11847 11847 1 FGTPASLTTR Unmodified 1049.5506 0.55055881 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 8 0 1 47.067 47.067 2 0.0037026 12411 TMT1-7 95.311 25.406 122.59 221.54 128.08 164.36 153.19 192.84 116 218 138 160 160 185 1 1 1 1 1 1 19670 5690 126 5642 9083 11848 11848 1 FGVEQDVDMVFASFIR Oxidation (M) 1874.8873 0.88728501 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 0 6.67 0.471 1 2 90.361 90.361 3 3.7423E-06 29278 TMT1-6 94.339 77.12 62.368 95.589 76.878 81.551 69.495 90.759 59 95 80 80 73 87 3 3 3 3 3 3 39858 5691 706;707 5643 9084;9085;9086 11849;11850;11851 11850 132 3 FGVEQDVDMVFASFIR Unmodified 1858.8924 0.89237039 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 6.86 1.12 4 1 1 1 94.655 94.655 3 5.035E-20 30819 TMT1-6 158.35 148.43 271.25 356.36 310.7 318.94 327.88 442.63 256 357 320 314 342 424 8 9 8 8 9 9 112190 5692 706;707 5643 9087;9088;9089;9090;9091;9092;9093 11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863;11864 11857 13 FGVIYQK Unmodified 853.46979 0.46978929 2004 Q684P5-3;Q684P5-2;Q684P5;P47736;P47736-2;P47736-3;P47736-4 RAP1GAP2;RAP1GAP Rap1 GTPase-activating protein 2;Rap1 GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 55.176 55.176 3 0.0064771 13814 TMT1-8 83.229 36.663 61.315 110.83 60.452 65.535 101.4 66.396 58 109 65 65 102 65 1 1 1 1 1 1 4817.8 5693 2004 5644 9094 11865 11865 1 FGVLFRDDK Unmodified 1095.5713 0.57129425 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 1 8 0 1 56.867 56.867 3 0.010444 16294 TMT1-7 73.985 20.229 224.26 373.74 224.4 190.38 150.01 463.69 212 369 237 189 167 439 1 1 1 1 1 1 18950 5694 2818 5645 9095 11866 11866 1 FGVPVIADGGIQNVGHIAK Unmodified 1891.0316 0.031581485 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 8 0 1 64.538 64.538 3 1.3903E-07 19330 TMT1-7 90.706 72.341 77.396 93.499 77.654 65.238 62.675 67.502 73 94 80 65 65 65 1 1 1 1 1 1 12676 5695 667 5646 9096 11867 11867 1 FGVQTDR Unmodified 821.40317 0.40316629 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 5 0 1 36.784 36.784 2 0.024627 8755 TMT1-4 94.006 36.195 342.92 456.29 408.76 299.29 284.15 523.83 324 457 417 301 302 499 1 1 1 1 1 1 30959 5696 1766 5647 9097 11868 11868 1 FGVVLDEIKPSSAPELQAVR Unmodified 2154.1685 0.1684689 95 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 1 7 0 1 69.195 69.195 4 3.2007E-13 21084 TMT1-6 104.89 95.631 69.076 48.413 71.404 97.173 69.839 59.835 65 51 73 94 73 58 1 1 1 1 1 1 8751.2 5697 95 5648 9098 11869 11869 1 FGVVTEVVMIYDAEK Unmodified 1698.8539 0.85385962 2397 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 0 6 0 1 86.911 86.911 3 6.9417E-06 28595 TMT1-5 97.273 77.263 37.929 81.758 48.131 43.874 71.74 75.771 36 80 51 44 73 73 2 2 2 2 2 2 3449.3 5698 2397 5649 9099 11870;11871 11871 2 FGVYDIDNK Unmodified 1069.508 0.50802529 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 6 0 1 58.393 58.393 3 0.0031653 17437 TMT1-5 80.239 50.891 37.777 65.144 87.863 48.748 93.504 75.15 36 65 87 51 94 73 1 1 1 1 1 1 12382 5699 252 5650 9100 11872 11872 1 FGWDCHGLPVEYEIDK Unmodified 1963.8774 0.87744861 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 6 0 1 66.933 66.933 3 1.7214E-05 20836 TMT1-5 86.378 68.889 68.954 71.818 72.073 50.66 41.871 53.171 65 73 73 51 44 51 1 1 1 1 1 1 9621.3 5700 1085 5651 9101 11873 11873 1 FGYDDDLDLTPEYLFPLLK Unmodified 2273.1144 0.11436764 2146 Q8IXI2-4;Q8IXI2;Q8IXI2-5;Q8IXI2-2;Q8IXI2-7;Q8IXI2-3 RHOT1 Mitochondrial Rho GTPase 1 yes no 0 0 0 0 0 6 0 1 99.081 99.081 3 0.031246 32904 TMT1-5 37.157 33.295 7.4331 15.459 0 7.651 0 30.914 7 15 0 7 0 29 1 1 0 1 0 1 684.17 5701 2146 5652 9102 11874 11874 1 FGYDEIDNGYLK Unmodified 1432.6511 0.65106071 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 5 0 1 64.497 64.497 3 0.025208 19664 TMT1-4 50.145 38.169 61.601 49.027 64.808 50.95 49.443 45.493 58 51 65 51 51 44 1 1 1 1 1 1 5121.5 5702 1824 5653 9103 11875 11875 1 FGYQFTQQGPR Unmodified 1327.6309 0.63093439 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 8 0 2 51.331 51.331 2;3 1.2555E-06 14105 TMT1-7 140.78 130.26 231.1 266.49 247.93 218.75 252.55 303 218 269 254 218 261 291 2 2 2 2 2 2 69023 5703 2788 5654 9104;9105 11876;11877 11876 2 FGYVDFESAEDLEK Unmodified 1647.7304 0.73043325 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 4.5 0.5 1 1 71.485 71.485 3 3.6643E-17 22372 TMT1-4 148.96 124.4 221.82 377.39 270.66 264.58 242.6 318.21 210 373 283 261 254 305 3 3 3 3 3 3 76295 5704 786 5655 9106;9107 11878;11879;11880 11880 3 FHALGPIYYR Unmodified 1235.6451 0.64512789 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 0 9 0 1 50.211 50.211 3 4.8592E-07 11853 TMT1-8 146.81 114.48 115.41 160.37 124.91 148.72 123.4 197.95 109 160 131 145 131 189 1 1 1 1 1 1 33500 5705 2905 5656 9108 11881 11881 1 FHDFLGDSWGILFSHPR Unmodified 2029.9799 0.97988027 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 9 0 1 74.364 74.364 4 2.2533E-14 21415 TMT1-8 116.06 98.19 314.05 370.96 283.42 267.76 265.44 349.54 296 373 295 265 277 335 2 2 2 2 2 2 172560 5706 945 5657 9109 11882;11883 11883 2 FHDIDDVK Unmodified 987.46616 0.46616048 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 4 0 1 44.051 44.051 3 0.0081479 11918 TMT1-3 76.827 65.675 92.169 115.52 100.84 47.816 101.92 74.91 87 116 102 51 102 73 1 1 1 1 1 1 8018.3 5707 2633 5658 9110 11884 11884 1 FHDIDDVKK Unmodified 1115.5611 0.56112349 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 1 6 0 1 41.827 41.827 4 0.019531 10887 TMT1-5 55.549 37.282 336.29 596.68 502.74 381.46 556.66 550.16 319 590 515 386 567 531 1 1 1 1 1 1 28128 5708 2633 5659 9111 11885 11885 1 FHDLLSQLDDQYSR Unmodified 1735.8166 0.81656291 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 6 0 1 64.069 64.069 3 4.5448E-17 19686 TMT1-5 147.52 137.99 61.621 72.826 41.358 35.235 87.602 51.866 58 73 44 36 87 51 1 1 1 1 1 1 22148 5709 1091 5660 9112 11886 11886 1 FHEFVEK Unmodified 934.45487 0.45486751 2766 Q9NWT6 HIF1AN Hypoxia-inducible factor 1-alpha inhibitor yes yes 0 0 0 0 0 6 0 1 44.037 44.037 3 0.04613 11798 TMT1-5 50.703 45.715 108.25 121.95 97.212 118.75 119.33 112.79 102 123 102 116 123 109 1 1 1 1 1 1 8451 5710 2766 5661 9113 11887 11887 1 FHEICSNLVK Unmodified 1245.6176 0.61759251 1818 Q15041;Q15041-2 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 47.903 47.903 3 0.011936 12766 TMT1-6 62.408 53.678 321.06 598.21 536.52 351.44 476.69 786.96 305 591 545 359 497 751 2 2 2 2 2 2 31654 5711 1818 5662 9114;9115 11888;11889 11888 2 FHEQFIVR Unmodified 1074.5611 0.56106391 1605 Q06787-11;Q06787-10;Q06787-8;Q06787-6;Q06787-2;Q06787-4;Q06787-5;Q06787-9;Q06787-7;Q06787-3;Q06787 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 0 7 0 1 43.467 43.467 3 0.003025 10914 TMT1-6 92.439 71.067 38.082 50.884 48.587 75.191 32.367 53.442 36 51 51 72 36 51 1 1 1 1 1 1 3838.6 5712 1605 5663 9116 11890 11890 1 FHGQFLLPELK Unmodified 1327.7289 0.72885752 1962 Q5JSP0;Q5JSP0-3;Q5JSP0-2 FGD3 FYVE, RhoGEF and PH domain-containing protein 3 yes no 0 0 0 0 0 9 0 1 63.387 63.387 3 0.014276 17019 TMT1-8 53.237 22.667 77.166 124.16 90.278 80.634 75.804 121.49 73 123 94 80 80 116 1 1 1 1 1 1 16195 5713 1962 5664 9117 11891 11891 1 FHILNNTEGDWWEAR Unmodified 1886.87 0.86999547 605 P09769 FGR Tyrosine-protein kinase Fgr yes yes 0 0 0 0 0 6 0 1 63.621 63.621 3 0.00094963 19524 TMT1-5 68.944 55.227 45.801 34.758 27.405 37.196 27.591 30.127 43 36 29 36 29 29 1 1 1 1 1 1 6482 5714 605 5665 9118 11892 11892 1 FHISEFPTLK Unmodified 1217.6445 0.64445919 1780 Q14554 PDIA5 Protein disulfide-isomerase A5 yes yes 0 0 0 0 0 8.5 0.5 1 1 59.725 59.725 3 0.0022438 17491 TMT1-7 82.008 48.264 283.5 411.52 334.94 274.58 379 475.28 268 410 345 276 390 456 2 2 2 2 2 2 56088 5715 1780 5666 9119;9120 11893;11894 11893 2 FHKPGENYK Unmodified 1118.5509 0.55089316 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 1 8 0 1 35.492 35.492 4 0.0012834 7893 TMT1-7 96.948 68.739 292.9 453.34 341.39 339.52 508.47 364.99 277 450 356 338 513 356 1 1 1 1 1 1 16189 5716 1146 5667 9121 11895 11895 1 FHMYEGYPLWK Oxidation (M) 1485.6751 0.67510739 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 0 0 8 0 1 57.681 57.681 3 0.0014934 16638 TMT1-7 57.492 41.268 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5717 394 5668 9122 11896 11896 42 1 FHMYEGYPLWK Unmodified 1469.6802 0.68019277 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 9 0 1 63.245 63.245 3 1.2194E-06 16971 TMT1-8 111.06 82.73 145.84 248.07 165.81 104.87 233 202.29 138 245 172 109 234 196 1 1 1 1 1 1 40183 5718 394 5668 9123 11897 11897 1 FHNWFDDR Unmodified 1135.4835 0.48354187 1141 P46977 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 0 0 0 0 0 7 0 1 51.213 51.213 3 0.014072 13976 TMT1-6 68.224 56.166 68.691 109.94 83.931 73.192 84.794 82.86 65 109 87 73 87 80 1 1 1 1 1 1 17189 5719 1141 5669 9124 11898 11898 1 FHPLAANVLASSSYDLTVR Unmodified 2060.0691 0.069089203 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 9 0 1 63.543 63.543 3 6.1925E-06 17111 TMT1-8 69.747 58.893 46.427 80.931 63.313 43.269 55.806 83.688 44 80 65 44 58 80 1 1 1 1 1 1 9520.3 5720 1342 5670 9125 11899 11899 1 FHQLDIDDLQSIR Unmodified 1598.8053 0.80526994 735 P16152;P16152-2;O75828 CBR1;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 yes no 0 0 0 0 0 5 0 1 59.747 59.747 3 6.1169E-09 17820 TMT1-4 127.27 113.36 192.13 178.43 199.01 103.96 176.08 246.55 181 183 199 109 181 236 1 1 1 1 1 1 50533 5721 735 5671 9126 11900 11900 1 FHSQLMR Unmodified 917.45416 0.454156 1182 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 0 0 8 0 1 34.141 34.141 3 0.0026062 7333 TMT1-7 102.72 44.115 61.241 86.879 93.315 64.457 54.576 91.185 58 87 94 65 58 87 1 1 1 1 1 1 5462.5 5722 1182 5672 9127 11901 11901 1 FHTEALTALLSDDSK Unmodified 1646.8152 0.81516593 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 6 0 1 65.738 65.738 3 7.5153E-06 20359 TMT1-5 96.673 65.675 108.13 137.78 105.23 87.384 76.299 98.027 102 138 109 87 80 94 1 1 1 1 1 1 12208 5723 1439 5673 9128 11902 11902 1 FHTITTSYYR Unmodified 1287.6248 0.62478638 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 8.5 0.5 1 1 41.769 41.769 3 0.00079396 8690 TMT1-8 91.095 70.759 315.53 398.09 372.89 311.48 388.94 532.56 298 400 381 312 403 510 3 3 3 3 3 3 50776 5724 1372 5674 9129;9130 11903;11904;11905 11904 3 FHTSYDKR Unmodified 1052.5039 0.50394296 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 7.5 0.5 1 1 30.669 30.669 4 0.016157 5997 TMT1-6 64.207 40.414 252.2 421.79 356.06 251.57 256.78 379.63 239 418 364 254 269 363 2 2 2 2 2 2 16039 5725 1152;1153 5675 9131;9132 11906;11907 11906 2 FHTVSGSK Unmodified 861.43447 0.43446642 2487 Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 0 8 0 1 31.726 31.726 3 0.025637 6508 TMT1-7 58.676 17.73 115.33 175.26 125.74 85.851 150.93 150.26 109 174 130 88 153 145 2 2 2 2 2 2 19467 5726 2487 5676 9133 11908;11909 11909 2 FHVDISLTDFIQK Unmodified 1561.814 0.81404372 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 8 0 1 74.79 74.79 3 7.5202E-28 23366 TMT1-7 158.3 95.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5727 1820 5677 9134 11910 11910 1 FHVEEEGK Unmodified 973.45051 0.45051041 397 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 0 2.5 1.12 1 1 1 1 37.651 37.651 3 0.00068226 9296 TMT1-3 131.06 78.784 1618.8 2329.5 2229.8 1710.6 2406 1938.6 1532 2327 2268 1728 2439 1883 6 6 6 6 6 6 337170 5728 397 5678 9135;9136;9137;9138 11911;11912;11913;11914;11915;11916 11916 6 FHVEEEGKGK Unmodified 1158.5669 0.56693715 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 5.5 0.5 1 1 35.902 35.902 4 0.0025079 8363 TMT1-4 83 65.564 2974.3 4256.2 2887.2 2494.4 2987.4 4275.8 2808 4234 3021 2491 3106 4091 4 4 4 4 4 4 335030 5729 397 5679 9139;9140 11917;11918;11919;11920 11917 4 FHYLPFLPSTEDVYDCR Unmodified 2157.983 0.98297631 427 P01903 HLA-DRA HLA class II histocompatibility antigen, DR alpha chain yes yes 0 0 0 0 0 7 0 1 70.186 70.186 3 1.337E-05 21483 TMT1-6 83.106 79.557 37.745 81.244 79.618 42.138 64.25 52.533 36 80 80 44 65 51 1 1 1 1 1 1 22017 5730 427 5680 9141 11921 11921 1 FHYLTFVPSAEDFYDCR Unmodified 2165.9517 0.95167618 801 P20036 HLA-DPA1 HLA class II histocompatibility antigen, DP alpha 1 chain yes yes 0 0 0 0 0 7 0 1 70.357 70.357 3 6.0105E-06 21559 TMT1-6 87.99 78.62 23.138 52.129 34.41 29.125 27.705 37.585 22 51 36 29 29 36 1 1 1 1 1 1 9615.9 5731 801 5681 9142 11922 11922 1 FIAEGIIDQGGGFR Unmodified 1478.7518 0.75177781 1976 Q5T447;Q5T447-2 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes no 0 0 0 0 0 6 0 1 68.712 68.712 3 0.0016021 21547 TMT1-5 66.533 41.147 37.972 81.876 40.895 36.131 41.476 84.096 36 80 44 36 44 80 1 1 1 1 1 1 4631.6 5732 1976 5682 9143 11923 11923 1 FIATLQYIVGR Unmodified 1279.7289 0.72885752 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 9 0 1 79.431 79.431 2 0.034732 23322 TMT1-8 62.466 24.306 38.168 51.121 34.059 36.671 34.394 45.923 36 51 36 36 36 44 1 1 1 1 1 1 11797 5733 1150 5683 9144 11924 11924 1 FIAVGYVDDTQFVR Unmodified 1628.8199 0.81985737 474 P04439;P04439-2 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 0 0 0 0 0 6.5 0.5 1 1 71.089 71.089 3 2.8825E-80 22459 TMT1-5 250.67 239.89 407.7 544.92 446.6 464.58 499.7 544.32 385 545 464 458 516 524 7 7 7 7 7 7 172890 5734 474 5684 9145;9146 11925;11926;11927;11928;11929;11930;11931 11926 7 FICPLTGLWPINTLK Unmodified 1771.9695 0.9694985 441 P02749 APOH Beta-2-glycoprotein 1 yes yes 0 0 0 0 0 9 0 1 89.539 89.539 3 1.9318E-05 27279 TMT1-8 75.669 54.716 54.134 49.663 56.884 58.81 63.484 52.554 51 51 58 58 65 51 2 2 2 2 2 2 4930.7 5735 441 5685 9147 11932;11933 11933 2 FICTTSAIQNR Unmodified 1309.6449 0.6448699 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 8 0 1 48.042 48.042 2 1.8243E-06 12831 TMT1-7 104.39 61.148 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5736 1283 5686 9148 11934 11934 1 FIDDVVSAVLR Unmodified 1232.6765 0.6764876 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 0 7 0 2 86.233 86.233 2;3 5.1605E-07 27751 TMT1-6 148.91 95.421 57.126 76.873 71.983 47.211 56.965 75.126 54 77 73 47 59 72 2 2 2 1 2 2 24795 5737 2202 5687 9149;9150 11935;11936 11936 2 FIDTSQFILNR Unmodified 1352.7089 0.70885036 213 O60220 TIMM8A Mitochondrial import inner membrane translocase subunit Tim8 A yes yes 0 0 0 0 0 8 0 1 70.214 70.214 3 0.0034753 21544 TMT1-7 73.327 44.082 23.293 28.814 28.225 29.342 35.794 14.969 22 29 29 29 36 15 1 1 1 1 1 1 3168.2 5738 213 5688 9151 11937 11937 1 FIDTTSK Unmodified 810.41233 0.41233399 1061 P39023;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 0 0 0 0 0 7 0 1 47.52 47.52 2 0.0097475 12513 TMT1-6 111.01 37.969 176.49 318.04 184.67 166.72 255.53 225.1 167 313 196 167 259 218 1 1 1 1 1 1 32596 5739 1061 5689 9152 11938 11938 1 FIDVPTLCEMLSYTPSSSK Unmodified 2174.0275 0.027543244 1011 P34949;P34949-2 MPI Mannose-6-phosphate isomerase yes no 0 0 0 0 0 9 0 1 87.721 87.721 3 1.3728E-06 26540 TMT1-8 71.742 47.455 15.66 45.177 34.866 29.103 27.413 46.122 15 44 36 29 29 44 1 1 1 1 1 1 2546.6 5740 1011 5690 9153 11939 11939 1 FIEDELQIPVK Unmodified 1329.718 0.71801807 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 5 0 1 71.704 71.704 3 0.00046436 22473 TMT1-4 93.058 49.973 61.56 56.467 65.461 26.288 80.171 67.002 58 58 65 29 80 65 1 1 1 1 1 1 14690 5741 962 5691 9154 11940 11940 1 FIEEHATK Unmodified 973.4869 0.48689592 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 5 0 1 37.836 37.836 3 0.0012438 9197 TMT1-4 105.52 85.734 319.67 575.63 428.42 379.87 528.27 587.22 303 568 445 380 541 565 1 1 1 1 1 1 33244 5742 686 5692 9155 11941 11941 1 FIEEQFEQYLR Unmodified 1500.7249 0.72489436 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 5 0 1 74.299 74.299 3 3.7296E-06 23512 TMT1-4 120.32 95.525 38.365 27.925 20.594 30.102 19.525 61.271 36 29 22 29 22 58 1 1 1 1 1 1 11706 5743 2288 5693 9156 11942 11942 1 FIEIAAR Unmodified 818.46504 0.46503826 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 6.5 0.5 1 1 53.174 53.174 2 0.018037 15308 TMT1-5 99.139 57.637 431.78 405.23 304.55 486.99 397.66 805.21 406 413 326 469 428 766 2 2 2 2 2 2 93938 5744 1545 5694 9157;9158 11943;11944 11943 2 FIENQEK Unmodified 906.4447 0.44469675 1959 Q5HYC2-2;Q5HYC2 KIAA2026 Uncharacterized protein KIAA2026 yes no 0 0 0 0 0 5 0 1 45.962 45.962 2 0.020829 12353 TMT1-4 96.964 66.296 289.6 522.41 296.78 252.55 276.49 504.86 274 514 315 252 292 481 1 1 1 1 1 1 39774 5745 1959 5695 9159 11945 11945 1 FIEPPVLNMK Oxidation (M) 1202.6369 0.63693097 2820 Q9P225-2;Q9P225 DNAH2 Dynein heavy chain 2, axonemal yes no 0 0 1 0 0 7 0 1 37.185 37.185 4 0.0079787 8429 TMT1-6 66.435 22.125 286.47 564.07 427.01 406.66 444.8 636.5 272 555 444 403 464 609 1 1 1 1 1 1 27073 5746 2820 5696 9160 11946 11946 316 1 FIFDCVSQEYGINPER Unmodified 1972.8989 0.89891233 12 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 0 0 0 6 0 1 73.896 73.896 3 5.2443E-06 23558 TMT1-5 90.561 81.031 23.054 59.45 42.32 36.026 42.544 53.152 22 58 44 36 44 51 1 1 1 1 1 1 8215.5 5747 12 5697 9161 11947 11947 1 FIFWSSEVAGSLYR Unmodified 1660.8249 0.82494275 414 P01133-2;P01133-3;P01133 EGF Pro-epidermal growth factor;Epidermal growth factor yes no 0 0 0 0 0 9 0 1 82.34 82.34 3 9.4957E-06 24488 TMT1-8 84.566 52.927 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5748 414 5698 9162 11948 11948 1 FIGELFK Unmodified 852.47454 0.47454032 1584;173 O43432-4;O43432;O43432-3;Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G3;EIF4G1 Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1 no no 0 0 0 0 0 8.5 0.5 1 1 70.352 70.352 2 0.013602 19770 TMT1-8 108.09 11.122 129.99 213.17 153.52 138.22 184.11 180.23 123 211 160 138 188 174 2 2 2 2 2 2 20988 5749 173;1584 5699 9163;9164 11949;11950 11950 2 FIGPLPR Unmodified 798.47521 0.47520902 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 9 0 1 53.106 53.106 2 0.0063555 13022 TMT1-8 94.396 35.076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5750 2430 5700 9165 11951 11951 1 FIHDQTSPNPK Unmodified 1282.6306 0.63060004 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 37.564 37.564 3 0.00072665 9188 TMT1-5 89.548 75.539 76.713 131.54 160.07 107.2 127.43 136.01 73 131 160 109 131 131 1 1 1 1 1 1 15742 5751 1280 5701 9166 11952 11952 1 FIHQSDLK Unmodified 986.51853 0.5185304 1002 P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 ABCC1 Multidrug resistance-associated protein 1 yes no 0 0 0 0 0 7 0 1 41.91 41.91 3 0.00049035 10328 TMT1-6 81.548 66.109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5752 1002 5702 9167 11953 11953 1 FIIHAPPGEFNEVFNDVR Unmodified 2100.0429 0.042874453 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 0 6.5 0.5 2 2 68.687 68.687 3;4 2.5236E-14 21485 TMT1-5 122.94 107.85 361.85 517.58 421.27 395.27 429.63 484.5 342 516 436 392 444 466 7 7 7 7 7 7 132000 5753 1143 5703 9168;9169;9170;9171 11954;11955;11956;11957;11958;11959;11960 11954 7 FIIPNVVK Unmodified 928.57459 0.57458871 385 P00338;P00338-3;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 5 4 1 1 66.671 66.671 2 0.00090459 18324 TMT1-8 151.51 65.398 1251 1787.3 1394.5 1147.6 1570.2 1688.5 1182 1781 1441 1153 1607 1626 2 2 2 2 2 2 367500 5754 385 5704 9172;9173 11961;11962;11963 11962 3 FIIPQIVK Unmodified 956.60589 0.60588884 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 9 0 1 70.411 70.411 2 0.0053489 19777 TMT1-8 126.54 80.822 2322.6 3021.5 2932.7 2360.7 2455.5 3434.9 2195 3033 2986 2362 2564 3288 2 2 2 2 2 2 570190 5755 527 5705 9174 11964;11965 11964 2 FIITALPTIYHCK Unmodified 1575.8483 0.84832073 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 0 9 0 1 67.916 67.916 3 6.1446E-10 18817 TMT1-8 119.69 88.3 99.481 114.46 135.05 154.92 168.13 196.68 94 116 138 152 174 189 1 1 1 1 1 1 30128 5756 2638 5706 9175 11966 11966 1 FILLACDGLFK Unmodified 1295.6948 0.6947802 2610 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 0 9 0 1 82.911 82.911 2 0.0058631 24714 TMT1-8 78.655 25.489 23.256 36.266 28.125 21.547 43.759 37.127 22 36 29 22 44 36 1 1 1 1 1 1 3587.9 5757 2610 5707 9176 11967 11967 1 FILNLPTFSVR Unmodified 1305.7445 0.74450759 1192 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 0 9 0 1 80.03 80.03 2 5.5347E-11 23554 TMT1-8 158.57 84.635 99.826 115.42 76.259 64.484 107.17 113.14 94 116 80 65 109 109 1 1 1 1 1 1 34847 5758 1192 5708 9177 11968 11968 1 FILPVNEGK Unmodified 1015.5702 0.57023162 2989 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 0 8 0 1 62.095 62.095 2 0.011644 18364 TMT1-7 86.67 35.792 108.08 168.94 87.142 87.202 143.3 127.03 102 167 94 87 145 123 1 1 1 1 1 1 14248 5759 2989 5709 9178 11969 11969 1 FILREDPAYLHYYDPAGAEDPLGAIHLR Unmodified 3211.6091 0.60908332 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 6 0 1 70.157 70.157 5 0.00055149 22071 TMT1-5 52.391 45.359 38.115 50.974 43.096 28.317 43.155 45.673 36 51 44 29 44 44 1 1 1 1 1 1 11477 5760 567 5710 9179 11970 11970 1 FILSCADDK Unmodified 1067.4957 0.49574604 1107 P43034;Q5IS43 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 0 6 0 1 57.215 57.215 2 0.010939 17040 TMT1-5 87.639 43.523 61.033 110.05 108.56 55.456 78.024 90.516 58 109 109 58 80 87 1 1 1 1 1 1 15507 5761 1107 5711 9180 11971 11971 1 FIMESGAK Unmodified 881.43169 0.43168922 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 7 0 1 51.337 51.337 2 0.035118 14100 TMT1-6 78.77 34.962 61.382 94.827 62.837 33.53 110.2 66.145 58 94 65 36 109 65 1 1 1 1 1 1 16007 5762 861 5712 9181 11972 11972 1 FIMGDSSVQDQWK Unmodified 1539.7028 0.70277871 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 7 0 1 65.848 65.848 3 1.077E-11 19780 TMT1-6 110.31 81.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5763 771 5713 9182 11973 11973 1 FINDQYEK Unmodified 1055.4924 0.49237523 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 5 0 1 49.584 49.584 2 0.0071328 13887 TMT1-4 103.55 56.349 53.8 111.33 60.774 58.475 68.944 137.68 51 109 65 58 73 131 1 1 1 1 1 1 22765 5764 2864 5714 9183 11974 11974 1 FINLFPETK Unmodified 1107.5964 0.59644637 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 9 0 1 71.986 71.986 2 0.0018505 20479 TMT1-8 111.65 58.482 84.689 139.87 74.865 64.567 107.16 113.14 80 138 80 65 109 109 1 1 1 1 1 1 10225 5765 369 5715 9184 11975 11975 1 FINMFAVLDELK Unmodified 1438.753 0.75302336 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 9 0 1 95.024 95.024 3 0.00036585 29282 TMT1-8 83.617 48.203 76.983 123.65 121.47 85.471 126.58 159.49 73 123 123 87 130 153 2 2 2 2 2 2 19555 5766 2079;2399 5716 9185 11976;11977 11977 2 FIPDPQGTNLMFAFFAQHFTHQFFK Unmodified 3015.453 0.45304037 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 9 0 1 91.658 91.658 4 6.713E-05 28018 TMT1-8 50.029 34.901 30.769 35.759 28.105 21.839 28.297 30.107 29 36 29 22 29 29 1 1 1 1 1 1 4694.5 5767 855 5717 9186 11978 11978 1 FIPEFIR Unmodified 920.51199 0.51198846 236 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 0 0 8 0 1 66.979 66.979 2 0.035911 20249 TMT1-7 88.029 47.083 77.276 109.36 84.288 64.995 54.551 91.185 73 109 87 65 58 87 1 1 1 1 1 1 20897 5768 236 5718 9187 11979 11979 1 FIPLARPEVK Unmodified 1168.6968 0.69682911 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 9 0 1 52.666 52.666 3 0.0074812 12844 TMT1-8 64.82 40.848 1110 1842.1 1233.3 1041.1 1581.5 1501.6 1050 1821 1290 1047 1607 1451 1 1 1 1 1 1 66250 5769 3006 5719 9188 11980 11980 1 FIPLSEPAPVPPIPNEQQLAR Unmodified 2312.2529 0.25286723 2480 Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 0 7 0 1 74.481 74.481 3 5.6225E-06 23197 TMT1-6 75.533 63.841 46.588 66.269 48.658 51.934 48.335 76.439 44 66 51 51 51 73 2 2 2 2 2 2 16846 5770 2480 5720 9189 11981;11982 11982 2 FIPYTEEFSEK Unmodified 1388.65 0.64999808 3066 Q9Y6Y8-2;Q9Y6Y8 SEC23IP SEC23-interacting protein yes no 0 0 0 0 0 5 0 1 66.022 66.022 3 0.034455 20287 TMT1-4 48.004 22.065 38.119 50.986 42.349 45.076 26.166 61.081 36 51 44 44 29 58 1 1 1 1 1 1 5482.2 5771 3066 5721 9190 11983 11983 1 FIQAWQSLPDFGISYVMVR Oxidation (M) 2272.1351 0.13506028 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 1 0 0 9 0 2 87.953 87.953 3;4 2.6651E-09 26655 TMT1-8 83.891 67.361 70.205 63.606 49.06 43.803 72.55 52.296 66 65 51 44 73 51 2 2 2 2 2 2 38567 5772 2112 5722 9191;9192 11984;11985 11985 279 2 FIQAWQSLPDFGISYVMVR Unmodified 2256.1401 0.14014566 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 9 0 2 92.365 92.365 2;3 3.9586E-32 28327 TMT1-8 148.36 129.32 101.59 99.106 153.81 139.19 131.68 182.79 96 102 152 138 138 175 4 4 3 4 4 4 109910 5773 2112 5722 9193;9194 11986;11987;11988;11989 11987 4 FIQLVQK Unmodified 874.52764 0.52763852 1976 Q5T447;Q5T447-2 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes no 0 0 0 0 0 9 0 1 61.098 61.098 2 0.0085956 16094 TMT1-8 128.75 11.056 108.34 122.18 82.683 80.234 121.1 112.74 102 123 87 80 123 109 1 1 1 1 1 1 11665 5774 1976 5723 9195 11990 11990 1 FIQPNIGELPTALK Unmodified 1539.8661 0.86607929 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 8 0 1 72.852 72.852 2 7.052E-07 22634 TMT1-7 110.93 82.727 46.825 34.55 35.703 21.105 43.23 53.132 44 36 36 22 44 51 1 1 1 1 1 1 8772.1 5775 1744 5724 9196 11991 11991 1 FIQQTYPSGGEEQAQYCR Unmodified 2160.9535 0.9534671 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 4 0 1 50.234 50.234 3 1.3664E-14 14384 TMT1-3 125.98 116.44 23.118 44.518 44.231 13.239 27.63 61.04 22 44 44 15 29 58 1 1 1 1 1 1 14650 5776 2267 5725 9197 11992 11992 1 FIQTDAPK Unmodified 918.48108 0.48108226 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 0 6.5 0.5 1 1 47.337 47.337 2 0.0037111 12648 TMT1-6 78.264 32.312 161.57 164.83 117.48 110.04 111.59 136.46 152 167 123 109 116 131 1 1 1 1 1 1 19960 5777 2737 5726 9198;9199 11993;11994 11994 2 FIQTFGK Unmodified 839.45414 0.45413923 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 57.765 57.765 2 0.030583 14820 TMT1-8 89.142 42.791 84.67 116.07 98.357 103.63 105.92 97.182 80 116 102 102 109 94 1 1 1 1 1 1 7400.6 5778 1507 5727 9200 11995 11995 1 FIQYLASR Unmodified 996.53927 0.53926584 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4;O60641-3;O60641-4;O60641 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 0 0 0 0 0 9 0 1 60.599 60.599 2 0.042456 15930 TMT1-8 67.464 41.637 61.342 94.715 69.683 74.318 70.084 83.28 58 94 73 73 73 80 1 1 1 1 1 1 9853.8 5779 1710 5728 9201 11996 11996 1 FISADVHGIWSR Unmodified 1386.7044 0.70443369 2 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 9 0 1 58.936 58.936 3 0.00010755 15303 TMT1-8 82.705 47.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5780 2 5729 9202 11997 11997 1 FISAPTK Unmodified 762.42759 0.42759012 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 0 9 0 1 48.822 48.822 2 0.013608 11320 TMT1-8 89.298 44.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5781 2198 5730 9203 11998 11998 1 FISDKDASIVGFFDDSFSEAHSEFLK Unmodified 2937.3709 0.37086969 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 7.5 0.5 2 2 82.975 82.975 4;5 1.2153E-28 26534 TMT1-6 120.08 100.7 416.59 505.27 427.96 401.01 509.68 582.42 393 508 442 399 524 560 5 5 5 5 5 5 142260 5782 955 5731 9204;9205;9206;9207 11999;12000;12001;12002;12003 12000 5 FISELAR Unmodified 834.45995 0.45995289 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7 0 1 52.859 52.859 2 0.013058 14682 TMT1-6 103.02 49.832 200.45 228.93 199.62 167.16 184.6 218.59 189 231 205 167 191 210 1 1 1 1 1 1 35726 5783 2079;2399 5732 9208 12004 12004 1 FISETLR Unmodified 864.47052 0.47051757 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 49.578 49.578 2 0.014822 13959 TMT1-5 101.64 40.671 99.143 192.31 125.94 84.391 169.8 242.47 94 189 131 87 174 232 1 1 1 1 1 1 17320 5784 1833 5733 9209 12005 12005 1 FISNPNSIILAVTAANTDMATSEALK Unmodified 2691.3789 0.37893196 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 8 0 2 89.242 89.242 3;4 2.9278E-12 28868 TMT1-7 73.109 60.052 23.305 45.038 12.384 23.048 13.839 23.057 22 44 15 22 15 22 1 1 1 1 1 1 12651 5785 68 5734 9210;9211 12006;12007 12007 2 FISVGYVDDTQFVR Unmodified 1644.8148 0.814772 425;629;426;689 P01889;P10321;P10321-2;P01893;P13747 HLA-B;HLA-C;HLA-H;HLA-E HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, alpha chain E no no 0 0 0 0 0 6 0 2 70.019 70.019 2;3 2.8817E-22 22097 TMT1-5 170 132.81 169.34 264.52 169.45 217.03 185.67 272.93 160 262 181 211 196 261 3 3 3 3 3 3 103340 5786 425;629;426;689 5735 9212;9213 12008;12009;12010 12009 3 FITHAPPGEFNEVFNDVR Unmodified 2088.0065 0.0064889465 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 62.691 62.691 3 1.9567E-19 19196 TMT1-5 136.35 118.06 336.99 582.44 396.81 349.73 429.57 455.72 319 575 415 349 441 439 3 3 3 3 3 3 155840 5787 1277 5736 9214;9215 12011;12012;12013;12014 12013 4 FITIFGTR Unmodified 953.53345 0.53345218 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 5 4 1 1 68.054 68.054 2 0.0015322 17292 TMT 1-phospho 87.251 69.216 403.37 693.15 507.88 444.31 627.59 593.98 382 685 528 445 639 574 2 2 2 2 2 2 120770 5788 578 5737 9216;9217 12015;12016;12017 12015 3 FITTVGIDFR Unmodified 1167.6288 0.62880913 50;1239 O00194;P51159-2;P51159 RAB27B;RAB27A Ras-related protein Rab-27B;Ras-related protein Rab-27A no no 0 0 0 0 0 8.5 0.5 1 1 69.925 69.925 2 2.3543E-08 19676 TMT1-8 163.32 57.799 592.34 809.38 748.62 570.2 726.39 807.55 560 810 763 575 746 777 4 4 4 4 4 4 232440 5789 50;1239 5738 9218;9219 12018;12019;12020;12021 12021 4 FIVDLTVQEK Unmodified 1190.6547 0.65468953 168 O43324 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes yes 0 0 0 0 0 7 0 1 68.985 68.985 2 0.032739 21043 TMT1-6 69.346 32.325 54.161 73.481 32.249 45.367 42.664 37.159 51 73 36 44 44 36 1 1 1 1 1 1 4240 5790 168 5739 9220 12022 12022 1 FIVIADFR Unmodified 979.5491 0.54910224 1173 P49247 RPIA Ribose-5-phosphate isomerase yes yes 0 0 0 0 0 9 0 1 70.74 70.74 2 0.045747 19973 TMT1-8 66.429 40.603 99.577 130.91 105.02 102.41 149.93 126.84 94 131 109 102 152 123 1 1 1 1 1 1 13707 5791 1173 5740 9221 12023 12023 1 FIVNQVR Unmodified 874.50249 0.5024864 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 9 0 1 46.475 46.475 2 0.040722 10369 TMT1-8 84.064 51.092 108.12 130.22 111.9 117.88 118.86 127.73 102 131 116 116 123 123 1 1 1 1 1 1 13354 5792 2172 5741 9222 12024 12024 1 FIVYSYK Unmodified 918.48511 0.485105 1365 P60983 GMFB Glia maturation factor beta yes yes 0 0 0 0 0 9 0 1 60.147 60.147 2 0.014056 15757 TMT1-8 105.39 39.133 122.2 243.13 174.87 129.56 170.36 165.7 116 239 181 131 174 160 1 1 1 1 1 1 18840 5793 1365 5742 9223 12025 12025 1 FIYEGSSDFSCLPTFGVIIGQK Unmodified 2464.1984 0.1984484 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 8.67 0.471 1 2 88.254 88.254 3;4 1.1483E-20 26725 TMT1-8 117.65 93.855 100.48 137.92 127.7 118.02 119.57 137.3 95 138 131 117 124 132 3 3 3 3 3 3 35609 5794 1250 5743 9224;9225;9226 12026;12027;12028 12028 3 FIYITPEELAAVANFIR Unmodified 1966.0564 0.056399252 2416 Q96HY6 DDRGK1 DDRGK domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 100.36 100.36 3 1.766E-10 31233 TMT1-8 101.75 81.475 14.829 30.815 6.2912 23.671 0 55.432 14 30 7 22 0 52 2 2 1 2 0 2 9642.6 5795 2416 5744 9227 12029;12030 12030 2 FIYVAIAQFIETTK Unmodified 1642.897 0.89704506 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 9 0 1 100.12 100.12 3 2.2643E-14 31127 TMT1-8 142.91 113.93 86.126 79.289 65.053 74.259 145.97 97.105 81 81 66 74 146 95 3 3 2 3 3 3 12439 5796 936 5745 9228 12031;12032;12033 12032 3 FIYVAIAQFIETTKK Unmodified 1770.992 0.99200808 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 1 9 0 1 90.724 90.724 4 9.388E-06 27758 TMT1-8 84.566 70.887 46.555 65.097 55.249 75.582 48.604 36.989 44 65 58 73 51 36 1 1 1 1 1 1 4094.4 5797 936 5746 9229 12034 12034 1 FIYVDVLPEEAVGHAR Unmodified 1813.9363 0.93628412 320 O75995 SASH3 SAM and SH3 domain-containing protein 3 yes yes 0 0 0 0 0 6 0 1 66.171 66.171 3 3.6024E-05 20508 TMT1-5 79.804 26.552 38.316 27.789 28.894 13.996 35.987 29.887 36 29 29 15 36 29 1 1 1 1 1 1 11673 5798 320 5747 9230 12035 12035 1 FKAEAPLPSPK Unmodified 1183.6601 0.66010926 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 8 0 1 48.617 48.617 3 0.0091273 13087 TMT1-7 67.887 32.242 153.56 474.09 298.91 236.59 246.48 486.52 147 460 313 237 262 463 1 1 1 1 1 1 27561 5799 1632 5748 9231 12036 12036 1 FKAEVQSNR Unmodified 1077.5567 0.55670682 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 7 0 1 34.443 34.443 3 0.041967 7342 TMT1-6 54.471 21.246 106.81 294.94 193.2 184.31 106.6 182.44 102 287 203 181 116 174 1 1 1 1 1 1 13852 5800 1093;1253 5749 9232 12037 12037 1 FKDFYQFTFNFAK Unmodified 1701.8191 0.81912909 2410 Q96GG9 DCUN1D1 DCN1-like protein 1 yes yes 0 0 0 0 1 9 0 1 75.686 75.686 3 0.01403 21900 TMT1-8 50.806 23.471 107.46 182.34 179.3 113.62 132.08 205.17 102 181 181 116 138 196 1 1 1 1 1 1 10677 5801 2410 5750 9233 12038 12038 1 FKDHVEGK Unmodified 958.48723 0.48723027 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 1 6 0 1 34.43 34.43 4 0.020211 7976 TMT1-5 65.224 24.635 563.56 634.53 504.26 489.23 575.1 630.65 531 640 524 485 592 607 1 1 1 1 1 1 20422 5802 1324 5751 9234 12039 12039 1 FKDIFQEIFDK Unmodified 1428.7289 0.7289171 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 8.25 0.433 3 1 81.015 81.015 2;3;4 5.2473E-05 23898 TMT1-8 100.69 66.806 759.17 1324.7 946.62 828.79 994.14 1132.5 719 1308 986 827 1024 1089 6 6 6 6 6 6 227170 5803 1164 5752 9235;9236;9237;9238 12040;12041;12042;12043;12044;12045 12045 6 FKDIFQEIFDKHYK Unmodified 1856.9461 0.94612052 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 2 9 0 1 70.075 70.075 4 0.0024721 19704 TMT1-8 65.092 41.293 53.633 125.98 76.484 50.446 39.242 130 51 123 80 51 44 123 1 1 1 1 1 1 5984 5804 1164 5753 9239 12046 12046 1 FKDIFQEIYDK Unmodified 1444.7238 0.72383172 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 1 8 0 2 71.943 71.943 3;4 0.0048457 22311 TMT1-7 81.185 50.747 183.5 307.5 277.9 200.57 252.21 337.12 174 305 283 203 261 323 2 2 2 2 2 2 54352 5805 307 5754 9240;9241 12047;12048 12048 2 FKDLGEEHFK Unmodified 1248.6139 0.61388734 29 CON__P02769 yes yes 0 0 0 0 1 7 0 1 47.496 47.496 4 0.023999 12494 TMT1-6 54.776 31.858 90.047 70.769 495.23 71.773 77.274 90.537 87 80 465 94 80 87 1 1 1 1 1 1 6902.1 + 5806 29 5755 9242 12049 12049 1 FKDLGEENFK Unmodified 1225.5979 0.59790293 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 3.5 2.5 1 1 53.413 53.413 3 0.01882 15265 TMT1-5 63.727 39.876 4999.5 7644.3 5898.8 4155 6733.6 7677.1 4728 7594 6070 4239 6872 7382 2 2 2 2 2 2 391470 + 5807 28 5756 9243;9244 12050;12051 12051 2 FKDPGLVDQLVK Unmodified 1357.7606 0.76055158 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 8 0 1 61.706 61.706 3 0.006048 18180 TMT1-7 67.93 22.015 337.03 375.16 384.68 293.93 354.43 403.49 318 380 390 296 365 388 2 2 2 2 2 2 46516 5808 1186 5757 9245 12052;12053 12052 2 FKDPNAPK Unmodified 915.48142 0.48141661 588;863 P09429;B2RPK0;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 no no 0 0 0 0 1 5.33 3.09 1 1 1 38.513 38.513 3 0.0031559 8919 TMT1-7 100.98 76.352 3409.4 5565.3 3141.4 3405 4908.5 4532.2 3221 5496 3368 3371 4991 4383 4 4 4 4 4 4 301520 5809 588;863 5758 9246;9247;9248 12054;12055;12056;12057 12057 4 FKEANNFLWPFK Unmodified 1539.7874 0.78743503 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 1 9 0 1 71.93 71.93 3 0.0023905 20399 TMT1-8 68.034 25.291 138.62 176 178.1 145.52 124.9 158.47 131 177 181 145 131 152 1 1 1 1 1 1 17813 5810 775 5759 9249 12058 12058 1 FKEVAEAYEVLSDK Unmodified 1626.8141 0.8141033 887 P25686-2;P25686 DNAJB2 DnaJ homolog subfamily B member 2 yes no 0 0 0 0 1 6 0 1 69.933 69.933 3 0.0079161 22033 TMT1-5 61.265 46.846 30.605 51.492 42.382 44.502 56.556 60.214 29 51 44 44 58 58 1 1 1 1 1 1 6377.5 5811 887 5760 9250 12059 12059 1 FKEYCPMVFR Unmodified 1375.6417 0.64169877 1152;1153;1503 P78356;P78356-2;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 9 0 1 55.576 55.576 3 0.01508 13953 TMT1-8 57.019 23.134 123.09 160.33 96.237 87.246 112.13 151.37 116 160 102 87 116 145 1 1 1 1 1 1 13565 5812 1503;1152;1153 5761 9251 12060 12060 1 FKGPFTDVVTTNLK Unmodified 1565.8453 0.84534384 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 1 9 0 1 62.575 62.575 3 6.1037E-10 16721 TMT1-8 111.43 61.806 379.83 222.95 533.94 543.8 485.62 696.1 358 242 530 535 511 666 2 2 2 2 2 2 37056 5813 2813 5762 9252 12061;12062 12061 2 FKGTESISK Unmodified 995.52876 0.52876073 1541 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 1 8 0 1 41.481 41.481 3 0.021982 10202 TMT1-7 64.121 24.204 381.02 508.31 452.95 325.92 471.5 515.28 360 509 462 331 482 496 1 1 1 1 1 1 30508 5814 1541 5763 9253 12063 12063 1 FKIGDQEFDHLPALLEFYK Unmodified 2309.1732 0.17321992 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 1 8 0 2 78.088 78.088 4;5 6.5296E-05 24675 TMT1-7 67.43 45.209 192.99 230.66 190.13 160.16 180.15 296.54 182 232 196 160 189 283 3 3 3 3 3 3 19865 5815 1127 5764 9254;9255 12064;12065;12066 12065 3 FKIPGSPPESMGR Unmodified 1401.7075 0.70747015 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 1 9 0 1 49.755 49.755 3 0.0010927 11661 TMT1-8 69.258 19.134 186.15 322.8 179.21 160.39 202.34 228.75 176 318 191 160 208 220 1 1 1 1 1 1 24550 5816 1217 5765 9256 12067 12067 1 FKLDLDFPNLPYLLDGK Unmodified 2007.0717 0.071714965 827 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 0 1 9 0 1 86.753 86.753 3 0.00015614 26200 TMT1-8 64.454 40.998 23.11 59.604 32.879 53.427 18.966 46.363 22 58 36 51 22 44 1 1 1 1 1 1 4777.5 5817 827 5766 9257 12068 12068 1 FKLEDSYDLK Unmodified 1256.6289 0.62886871 1159 P48595 SERPINB10 Serpin B10 yes yes 0 0 0 0 1 6 0 1 55.797 55.797 3 0.0043359 16434 TMT1-5 80.69 19.255 207.89 214.18 224.36 165.16 270.57 245.99 196 218 227 168 274 238 1 1 1 1 1 1 14258 5818 1159 5767 9258 12069 12069 1 FKLEESYTLNSDLAR Unmodified 1784.8945 0.89447888 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 1 6.5 0.5 1 1 57.95 57.95 3 6.5531E-17 17319 TMT1-5 143.28 107.09 662.73 1170.6 876.36 778.63 861.8 1093.6 628 1156 910 775 894 1049 4 4 4 4 4 4 176400 5819 967 5768 9259;9260 12070;12071;12072;12073 12071 4 FKLVFLGEQSVGK Unmodified 1450.8184 0.81840081 2733;810 P20340;P20340-2;P20340-3;Q9NRW1 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 1 9 0 1 66.472 66.472 3 0.045364 18298 TMT1-8 41.227 21.903 130.3 166.55 140.74 123.45 138.15 228.45 123 167 145 123 145 218 1 1 1 1 1 1 5265.8 5820 810;2733 5769 9261 12074 12074 1 FKMPEMNIK Unmodified 1136.5722 0.57222223 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 1 9 0 1 56.576 56.576 3 0.0041539 14352 TMT1-8 73.781 27.785 169.63 267.49 117.54 163.9 211.41 325.49 160 264 131 160 220 311 1 1 1 1 1 1 21823 5821 1632 5770 9262 12075 12075 1 FKPGYLEATLNWFR Unmodified 1740.8988 0.8987764 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 1 9 0 1 75.49 75.49 3 2.15E-05 21865 TMT1-8 93.51 75.372 192.3 169.19 177.93 152.43 165.13 287.37 181 174 181 152 174 274 1 1 1 1 1 1 36132 5822 2633 5771 9263 12076 12076 1 FKYYSFFDLDPK Unmodified 1568.7551 0.75513185 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 9 0 2 71.847 71.847 3;4 0.0019527 20461 TMT1-8 73.848 38.644 426.84 604.64 425.03 331.99 411.47 671.56 403 602 442 334 430 641 3 3 3 3 3 3 48697 5823 2112 5772 9264;9265 12077;12078;12079 12078 3 FLADQQSEIDGLK Unmodified 1462.7304 0.73037367 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 5 0 1 63.459 63.459 3 5.1334E-06 19274 TMT1-4 109.22 65.23 68.953 63.181 79.539 64.712 84.671 97.788 65 65 80 65 87 94 1 1 1 1 1 1 11189 5824 668 5773 9266 12080 12080 1 FLALGDSGVGK Unmodified 1062.571 0.5709599 1239 P51159-2;P51159 RAB27A Ras-related protein Rab-27A yes no 0 0 0 0 0 8 0 1 62.655 62.655 3 0.015044 18581 TMT1-7 56.783 13.962 84.905 85.427 84.665 87.892 114.48 82.013 80 87 87 87 116 80 1 1 1 1 1 1 11798 5825 1239 5774 9267 12081 12081 1 FLALGTHYGK Unmodified 1105.592 0.59202969 1196 P49754-2;P49754-3;P49754 VPS41 Vacuolar protein sorting-associated protein 41 homolog yes no 0 0 0 0 0 9 0 1 52.474 52.474 3 0.0022067 12764 TMT1-8 72.643 42.9 92.245 139.48 67.599 57.318 108.82 74.713 87 138 73 58 109 73 1 1 1 1 1 1 6817.1 5826 1196 5775 9268 12082 12082 1 FLAQLSEFATTNQISLGSLR Unmodified 2195.1586 0.15863249 2120 Q86VX2-2;Q86VX2 COMMD7 COMM domain-containing protein 7 yes no 0 0 0 0 0 9 0 1 86.992 86.992 3 9.0947E-06 26302 TMT1-8 65.954 39.518 30.804 28.302 28.547 21.955 20.706 37.785 29 29 29 22 22 36 1 1 1 1 1 1 5038.4 5827 2120 5776 9269 12083 12083 1 FLASVSTVLTSK Unmodified 1251.7075 0.70745338 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 0 7 3.46 1 3 73.168 73.168 2;3 7.0455E-63 21210 TMT1-8 247.54 182.74 6675.3 6405.3 5725.8 3930.1 1575.6 2621.1 6283 6533 5840 3935 1765 2501 7 7 7 7 7 7 1139800 5828 1499 5777 9270;9271;9272;9273 12084;12085;12086;12087;12088;12089;12090 12086 7 FLAVGLVDNTVR Unmodified 1302.7296 0.7295858 1850 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 0 8 0 1 68.376 68.376 2 0.037866 20834 TMT1-7 62.303 41.973 130.36 142.96 151.12 92.202 81.538 152.24 123 145 152 94 87 145 1 1 1 1 1 1 13185 5829 1850 5778 9274 12091 12091 1 FLCFGSEGGTYYIK Unmodified 1640.7545 0.75447993 626 P10155;P10155-3;P10155-5;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 9 0 1 72.185 72.185 3 0.00093991 20525 TMT1-8 60.157 30.099 61.338 94.703 70.411 58.008 63.264 60.023 58 94 73 58 65 58 1 1 1 1 1 1 6010.3 5830 626 5779 9275 12092 12092 1 FLDAGHK Unmodified 786.40244 0.40243801 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6.5 0.5 1 1 40.444 40.444 3 0.0032364 10210 TMT1-5 100.19 67.967 967.26 1602.4 1446.2 1142 1356.2 1714.9 917 1590 1477 1147 1403 1645 4 4 4 4 4 4 140750 5831 955 5780 9276;9277 12093;12094;12095;12096 12093 4 FLDDIKK Unmodified 877.49092 0.49091866 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 1 7 0 1 53.122 53.122 3 0.017275 14759 TMT1-6 79.469 24.085 328.47 415.74 347.06 234.65 313.34 369.49 310 417 355 239 322 355 1 1 1 1 1 1 16774 5832 2594 5781 9278 12097 12097 1 FLDELEDEAK Unmodified 1207.5608 0.56084872 2972 Q9Y2R0 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes yes 0 0 0 0 0 2 0 1 67.965 67.965 2 0.0032091 21850 TMT1-1 96.89 59.778 30.671 27.929 51.368 44.538 26.19 61.081 29 29 51 44 29 58 1 1 1 1 1 1 2747.3 5833 2972 5782 9279 12098 12098 1 FLDFIGHILT Unmodified 1174.6386 0.63864553 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 9 0 1 92.169 92.169 2 0.0019883 28215 TMT1-8 102 79.172 145.92 227.8 169.21 153.13 155.54 200.23 138 226 176 152 162 192 1 1 1 1 1 1 134260 5834 1152;1153 5783 9280 12099 12099 1 FLDFITNIFA Unmodified 1199.6227 0.62266112 2244 Q8TBX8-2;Q8TBX8;Q8TBX8-3 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes no 0 0 0 0 0 9 0 1 114.35 114.35 2 0.036234 35194 TMT1-8 65.038 45.561 0 0 0 8.6184 6.6764 7.2715 0 0 0 8 7 7 0 0 0 1 1 1 917.53 5835 2244 5784 9281 12100 12100 1 FLDGDELTLADCNLLPK Unmodified 1932.9503 0.9502792 2439 Q9NZA1-3;Q9NZA1-2;Q9NZA1;Q96NY7-2;Q96NY7 CLIC5;CLIC6 Chloride intracellular channel protein 5;Chloride intracellular channel protein 6 yes no 0 0 0 0 0 5.5 0.5 1 1 81.234 81.234 3 7.8456E-06 26483 TMT1-5 67.416 50.338 77.372 109.62 67.97 66.609 78.574 59.586 73 109 72 66 80 58 2 2 2 2 2 2 5748.5 5836 2439 5785 9282;9283 12101;12102;12103 12103 3 FLDGIYVSEK Unmodified 1169.5968 0.5968403 996 Q5IFJ7;P32969 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 0 6 0 1 65.854 65.854 2 0.00012931 20395 TMT1-5 136.33 80.649 152.94 275.57 211.13 215.63 186.39 345.4 145 272 220 212 199 329 1 1 1 1 1 1 34431 5837 996 5786 9284 12104 12104 1 FLDGNELTLADCNLLPK Unmodified 1931.9663 0.96626362 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 6.33 0.471 2 1 79.626 79.626 3;4 9.2223E-19 25825 TMT1-5 131.39 114.51 636.19 794.98 605.76 536.77 573.79 757.54 600 797 629 534 597 726 5 5 5 5 5 5 207060 5838 59 5787 9285;9286;9287 12105;12106;12107;12108;12109 12106 5 FLDGNEMTLADCNLLPK Unmodified 1949.9227 0.92268424 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 0 6 0 1 77.013 77.013 3 1.4312E-07 24786 TMT1-5 73.252 56.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5839 3048 5788 9288 12110 12110 1 FLDINLYK Unmodified 1024.5593 0.55933258 2726 Q9NRF8 CTPS2 CTP synthase 2 yes yes 0 0 0 0 0 8 0 1 71.897 71.897 2 0.0072481 22232 TMT1-7 69.812 10.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5840 2726 5789 9289 12111 12111 1 FLDLLEPLGR Unmodified 1171.6601 0.66010926 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7.5 0.5 1 1 83.51 83.51 2 0.0055153 26650 TMT1-6 90.761 49.815 192.39 292.67 237.88 219.21 201.79 257.54 182 291 246 217 211 247 5 5 5 5 5 5 25187 5841 651 5790 9290;9291 12112;12113;12114;12115;12116 12112 5 FLDLWNK Unmodified 934.49125 0.49125301 2410 Q96GG9 DCUN1D1 DCN1-like protein 1 yes yes 0 0 0 0 0 9 0 1 73.584 73.584 2 0.02712 21045 TMT1-8 91.041 37.871 68.843 86.619 78.149 64.361 107.72 97.13 65 87 80 65 109 94 1 1 1 1 1 1 16387 5842 2410 5791 9292 12117 12117 1 FLDVLELAEK Unmodified 1175.6438 0.64379049 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 6 0 1 83.31 83.31 2 0.0005343 27263 TMT1-5 114.4 86.659 54.159 42.176 59.081 19.568 50.886 45.452 51 44 58 22 51 44 1 1 1 1 1 1 6025.4 5843 2935 5792 9293 12118 12118 1 FLEEHPGGEEVLR Unmodified 1510.7416 0.74160705 384 P00167-2;P00167-3;P00167 CYB5A Cytochrome b5 yes no 0 0 0 0 0 3 0 1 48.384 48.384 3 9.4253E-05 14614 TMT1-2 92.906 66.926 61.159 94.206 100.85 79.84 84.488 82.869 58 94 102 80 87 80 1 1 1 1 1 1 19218 5844 384 5793 9294 12119 12119 1 FLEESVSMSPEER Unmodified 1538.6923 0.6922736 721 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 0 3 0 1 58.319 58.319 3 0.0039788 18513 TMT1-2 64.534 34.845 38.22 27.523 45.19 12.876 43.901 44.585 36 29 44 15 44 43 1 1 1 1 1 1 5124.7 5845 721 5794 9295 12120 12120 1 FLEEYLSSTPQR Unmodified 1468.7198 0.71980898 1400 P61803 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 0 0 0 0 0 5.33 0.471 2 1 65.259 65.259 2;3 0.00045969 20089 TMT1-5 85.845 77.748 131.99 105.58 89.759 111.1 142.96 135.57 124 109 94 109 146 131 3 3 3 3 3 3 31934 5846 1400 5795 9296;9297;9298 12121;12122;12123 12123 3 FLEFTTLSAAELPGSSAVR Unmodified 1995.0313 0.031306714 1793 Q14699 RFTN1 Raftlin yes yes 0 0 0 0 0 8 0 1 79.34 79.34 3 8.5764E-06 25112 TMT1-7 64.346 49.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5847 1793 5796 9299 12124 12124 1 FLEGTSCIAGVFVDATK Unmodified 1813.892 0.89203604 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7.5 0.5 1 1 79.822 79.822 3 2.1065E-10 25197 TMT1-6 114.59 89.267 61.565 95.336 31.648 28.595 64.616 59.984 58 94 36 29 65 58 1 1 1 1 1 1 21506 5848 1833 5797 9300;9301 12125;12126 12125 2 FLEHLSGAGK Unmodified 1057.5556 0.55564418 1559 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 0 0 0 0 0 7.5 0.5 1 1 48.263 48.263 3 0.0001419 12838 TMT1-7 108.47 77.906 529.48 795.52 686.09 396.55 568.33 738.51 501 792 697 410 585 708 2 2 2 2 2 2 62798 5849 1559 5798 9302;9303 12127;12128 12128 2 FLELLPK Unmodified 858.52149 0.52149051 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 8 0 1 72.344 72.344 2 0.010537 22384 TMT1-7 107.66 59.155 92.272 115.81 83.147 80.222 120.29 136.21 87 116 87 80 123 131 1 1 1 1 1 1 13155 5850 1467 5799 9304 12129 12129 1 FLENEDRR Unmodified 1077.5203 0.52032131 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 1 3.5 0.5 1 1 33.678 33.678 3 0.0017062 8818 TMT1-2 117.89 66.544 267.32 467.63 480.7 280.65 407.61 395.58 254 464 483 290 415 382 2 2 2 2 2 2 41979 5851 407 5800 9305;9306 12130;12131 12130 2 FLEPTLR Unmodified 874.49125 0.49125301 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 53.913 53.913 2 0.0082888 15672 TMT1-5 117.62 43.984 138.73 190.36 146.16 138.76 178.62 126.02 131 190 152 138 181 123 1 1 1 1 1 1 19537 5852 714 5801 9307 12132 12132 1 FLEQLQELDAK Unmodified 1332.6925 0.6925316 2164 Q8N1B4-2;Q8N1B4 VPS52 Vacuolar protein sorting-associated protein 52 homolog yes no 0 0 0 0 0 5 0 1 73.266 73.266 3 0.0027696 23120 TMT1-4 75.695 45.364 46.624 57.734 49.904 35.435 49.9 52.942 44 58 51 36 51 51 1 1 1 1 1 1 3722.6 5853 2164 5802 9308 12133 12133 1 FLEQQNK Unmodified 905.46068 0.46068117 575;23 P08670;P05787-2;P05787;CON__Q9DCV7;CON__P08729;P08729;CON__P05787;CON__Q3KNV1;CON__Q6ISB0;P14136-2;P14136;P14136-3;Q9NSB2;CON__Q9NSB2;CON__Q8BGZ7;CON__P50446;CON__Q922U2;CON__Q8N1N4-2;CON__Q7RTT2;CON__Q5XQN5;CON__P12035;CON__Q14533;CON__Q01546;CON__O43790;CON__H-INV:HIT000292931;CON__Q61726;CON__P78386;CON__Q6NT21;P12035;Q01546;Q8N1N4-2;CON__P07744;Q8N1N4;P78386;Q14533;P78385;O43790;CON__P78385;CON__Q8VED5;CON__Q5XKE5;CON__O95678;CON__P48668;CON__P04259;CON__P02538;CON__P13647;Q5XKE5;O95678;P48668;P04259;P02538;P13647 VIM;KRT8;KRT7;GFAP;KRT84;KRT3;KRT76;KRT78;KRT85;KRT81;KRT83;KRT86;KRT79;KRT75;KRT6C;KRT6B;KRT6A;KRT5 Vimentin;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Glial fibrillary acidic protein;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 78;Keratin, type II cuticular Hb5;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb6;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5 no no 0 0 0 0 0 3.5 2.5 1 1 44.422 44.422 2 0.0034955 11739 TMT1-5 139.31 30.301 2575.9 4203.2 2633.9 2298.9 3203.4 3914.6 2435 4155 2774 2302 3292 3758 3 3 3 3 3 3 380300 + 5854 575;23 5803 9309;9310 12134;12135;12136 12135 3 FLESEFSSENLR Unmodified 1456.6834 0.68342347 1200 P49758-2;P49758-6;P49758-11;P49758-7;P49758-10;P49758-9;P49758-16;P49758-5;P49758-8;P49758-3;P49758;P49758-13;P49758-14;P49758-15;P49758-12;P49802-5;P49802-2;P49802-3;P49802-4;P49802 RGS6;RGS7 Regulator of G-protein signaling 6;Regulator of G-protein signaling 7 yes no 0 0 0 0 0 4 0 1 61.96 61.96 3 0.00070628 18989 TMT1-3 80.245 43.911 46.783 43.067 35.558 12.894 73.458 67.194 44 44 36 15 73 65 1 1 1 1 1 1 4425.2 5855 1200 5804 9311 12137 12137 1 FLESLPEEEQQR Unmodified 1503.7205 0.72053726 759 P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 0 3 0 1 57.563 57.563 3 0.01305 18200 TMT1-2 55.578 33.045 23.171 44.665 35.227 20.847 58.45 36.708 22 44 36 22 58 36 1 1 1 1 1 1 7068.5 5856 759 5805 9312 12138 12138 1 FLESVEGNQNYPLLLLTLLEK Unmodified 2432.3203 0.32027809 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 0 8 0 1 103.66 103.66 3 0.00010818 33425 TMT1-7 63.578 47.813 0 4.256 0 0 4.0415 4.1487 0 4 0 0 4 4 0 1 0 0 1 1 908.55 5857 1310 5806 9313 12139 12139 1 FLETSAK Unmodified 794.41742 0.41741937 2333 Q92930 RAB8B Ras-related protein Rab-8B yes yes 0 0 0 0 0 6.5 0.5 1 1 47.906 47.906 2 0.00066801 13088 TMT1-5 114.78 54.632 160.86 239.49 173.16 168.32 206.97 205.16 152 238 181 167 212 198 1 1 1 1 1 1 16285 5858 2333 5807 9314;9315 12140;12141 12140 2 FLEVIKPFCVILPEIQKPER Unmodified 2454.3709 0.37087387 1396 P61619 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 yes yes 0 0 0 0 2 9 0 1 79.064 79.064 4 0.0021946 23221 TMT1-8 55.206 40.432 54.17 49.764 50.694 27.597 57.333 60.192 51 51 51 29 58 58 1 1 1 1 1 1 5940.4 5859 1396 5808 9316 12142 12142 1 FLEVQYLTGGLIEPDTPGR Unmodified 2104.0841 0.084070566 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 82.797 82.797 2 1.1616E-07 27037 TMT1-5 73.887 47.875 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5860 1833 5809 9317 12143 12143 1 FLFDSVSSQNVGLR Unmodified 1567.7995 0.79945628 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 8.5 0.5 1 1 69.174 69.174 3 5.3177E-05 19306 TMT1-8 83.53 60.459 116 91.858 83.784 95.484 120.4 112.76 109 95 87 94 123 109 2 2 2 2 2 2 14711 5861 65 5810 9318;9319 12144;12145 12145 2 FLFNLPLNIER Unmodified 1374.766 0.76597131 2433 Q96KP1 EXOC2 Exocyst complex component 2 yes yes 0 0 0 0 0 9 0 1 82.474 82.474 3 2.3838E-05 24538 TMT1-8 104.43 71.205 7.3027 15.096 22.214 14.523 29.146 15.158 7 15 22 15 29 15 1 1 1 1 1 1 3394.4 5862 2433 5811 9320 12146 12146 1 FLFPFFDSAYQGFASGNLER Unmodified 2312.0902 0.090218576 756 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 0 9 0 1 94.449 94.449 3 8.8031E-09 29057 TMT1-8 78.021 49.371 31.63 59.919 43.324 11.888 44.203 37.115 30 59 44 14 44 36 2 2 2 2 2 2 10692 5863 756 5812 9321 12147;12148 12147 2 FLFQYDNYGSTAEDIVEWLK Unmodified 2437.1478 0.14779303 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 7 0 1 97.56 97.56 3 8.0509E-10 31671 TMT1-6 93.684 69.884 12.738 9.5277 15.157 9.8105 11.49 17.794 12 10 15 10 12 17 1 1 1 1 1 1 3825.2 5864 1780 5813 9322 12149 12149 1 FLFVDADQIVR Unmodified 1321.703 0.7030367 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 7 0 1 74.748 74.748 2 0.00020818 23275 TMT1-6 107.95 69.865 123.29 137.15 82.054 72.497 127.71 174.38 116 138 87 73 131 167 1 1 1 1 1 1 20239 5865 2789 5814 9323 12150 12150 1 FLGATTDTTVLEANAVLLGIQESK Unmodified 2490.3217 0.32173465 2971 Q9Y2Q9 MRPS28 28S ribosomal protein S28, mitochondrial yes yes 0 0 0 0 0 7 0 1 90.493 90.493 4 0.0017732 29305 TMT1-6 43.349 29.039 15.831 37.021 12.916 22.735 28.769 15.169 15 36 15 22 29 15 1 1 1 1 1 1 1730.9 5866 2971 5815 9324 12151 12151 1 FLGCVDIK Unmodified 950.48954 0.48953845 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 8 0 1 61.905 61.905 3 0.0055776 18294 TMT1-7 82.671 47.864 53.775 118.82 58.584 97.564 89.683 121.1 51 116 65 94 94 116 1 1 1 1 1 1 6779.8 5867 2930 5816 9325 12152 12152 1 FLGDIEVWDQAEK Unmodified 1548.746 0.74602373 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 76.137 76.137 2 2.3385E-08 24259 TMT1-4 127.87 103.49 38.035 58.307 50.26 27.643 56.268 91.136 36 58 51 29 58 87 1 1 1 1 1 1 8640.4 5868 902 5817 9326 12153 12153 1 FLGGLVK Unmodified 732.45341 0.45341094 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 1 62.468 62.468 2 0.012229 16658 TMT1-8 113.82 44.431 367.69 634.21 422.48 453.27 480.13 581.13 348 626 446 446 498 558 2 2 2 2 2 2 78951 5869 2525 5818 9327 12154;12155 12154 2 FLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVR Unmodified 4315.0936 0.093595979 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 7 0 2 105.35 105.35 4;5 2.5382E-30 33609 TMT1-6 106.49 98.087 2.105 5.0897 5.2855 1.093 0 1.066 2 5 5 1 0 1 1 2 1 1 0 1 4612.3 5870 1379 5819 9328;9329 12156;12157 12157 2 FLGTEPEPDAVGLDSGHIR Unmodified 2008.9854 0.98541915 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 0 4 0 1 57.921 57.921 3 2.0809E-35 17467 TMT1-3 156.41 136.74 122.71 175.46 147.44 131.9 132.56 166.78 116 175 152 131 138 160 2 2 2 2 2 2 51299 5871 1904 5820 9330 12158;12159 12159 2 FLGVEMEK Unmodified 951.47355 0.47355404 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 60.868 60.868 2 0.011133 18463 TMT1-5 98.299 47.333 108.41 107.27 83.224 88.16 104.76 151.58 102 109 87 87 109 145 1 1 1 1 1 1 10141 5872 1723 5821 9331 12160 12160 1 FLHKHDLDLICR Unmodified 1565.8137 0.81366656 1413;1044 P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 1 8 0 1 47.82 47.82 4 0.00038045 12735 TMT1-7 89.013 75.334 146.59 165.98 108.8 134.97 92.052 245.75 138 167 116 131 102 233 1 1 1 1 1 1 7859.1 5873 1044;1413 5822 9332 12161 12161 1 FLIATGERPR Unmodified 1158.6509 0.65094155 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 1 9 0 1 43.635 43.635 3 0.00011739 9345 TMT1-8 109.42 57.565 107.75 120.54 183.34 106.1 112.07 127.92 102 123 181 109 116 123 1 1 1 1 1 1 8632 5874 1912 5823 9333 12162 12162 1 FLICTDVAAR Unmodified 1164.5961 0.59612879 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 8 0 1 59.42 59.42 2 0.00055632 17324 TMT1-7 113.74 67.314 76.957 108.47 138.67 84.242 137.43 88.82 73 109 138 87 138 87 1 1 1 1 1 1 18437 5875 2291 5824 9334 12163 12163 1 FLIDGFPR Unmodified 963.5178 0.51780212 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 0 8 0 1 67.852 67.852 2 0.012099 20689 TMT1-7 97.033 58.197 354.66 531.93 355.87 363.11 545.05 547.29 335 528 375 361 555 528 2 2 2 2 2 2 67903 5876 953 5825 9335 12164;12165 12165 2 FLILLGSPK Unmodified 986.61645 0.61645353 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 9 0 1 76.413 76.413 2 2.866E-06 22102 TMT1-8 160.75 81.149 414.09 733.39 476.09 568.13 305.27 645.81 392 723 506 551 338 614 2 2 2 2 2 2 78306 5877 2951 5826 9336 12166;12167 12166 2 FLILPDMLK Unmodified 1088.6304 0.63038903 1434 P62318-2;P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 0 9 0 1 82.914 82.914 2 0.0018439 24659 TMT1-8 111.95 50.974 162.4 210.49 119.55 171.98 182.01 196.28 153 210 130 167 188 189 2 2 2 2 2 2 29192 5878 1434 5827 9337 12168;12169 12168 2 FLIPHIR Unmodified 894.54396 0.54395729 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 9 0 1 51.837 51.837 3 0.0023079 12471 TMT1-8 97.596 70.634 30.771 35.765 27.768 29.383 35.023 37.377 29 36 29 29 36 36 1 1 1 1 1 1 24124 5879 772 5828 9338 12170 12170 1 FLIPNASQAESK Unmodified 1303.6772 0.67721588 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 0 7.5 0.5 1 1 57.875 57.875 2 9.9816E-44 16706 TMT1-7 222.18 206.29 2142.6 2883.3 2633.1 2200.7 2730.6 3102 2025 2887 2694 2204 2809 2983 4 4 4 4 4 4 618870 5880 1471 5829 9339;9340 12171;12172;12173;12174 12173 4 FLIPNASQAESKVFYLK Unmodified 1954.0564 0.056399252 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 1 9 0 1 72.51 72.51 3 2.6082E-09 20665 TMT1-8 90.754 57.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5881 1471 5830 9341 12175 12175 1 FLIQNVLR Unmodified 1001.6022 0.60220045 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 66.22 66.22 2 0.031486 18214 TMT1-8 70.912 27.912 122.96 161.05 117.28 123.95 186.07 172.71 116 161 123 123 189 167 1 1 1 1 1 1 13309 5882 1085 5831 9342 12176 12176 1 FLITHNPTNATLNK Unmodified 1582.8467 0.84674083 1660 Q12974;Q12974-4;Q12974-2;Q12974-3;Q93096 PTP4A2;PTP4A1 Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1 yes no 0 0 0 0 0 9 0 1 50.775 50.775 3 1.0763E-14 12078 TMT1-8 145.49 104.4 92.113 100.26 123.13 78.093 106.8 105.68 87 102 123 80 109 102 1 1 1 1 1 1 16784 5883 1660 5832 9343 12177 12177 1 FLIWDTAGQER Unmodified 1334.6619 0.66190017 1733 Q13636;Q9UL26 RAB31;RAB22A Ras-related protein Rab-31;Ras-related protein Rab-22A yes no 0 0 0 0 0 8 0 1 69.037 69.037 2 0.0063538 21120 TMT1-7 84.31 66.985 54.028 80.666 48.494 35.381 57.232 52.733 51 80 51 36 58 51 1 1 1 1 1 1 5885.1 5884 1733 5833 9344 12178 12178 1 FLLADNLYCK Unmodified 1255.6271 0.62709457 1398 P61758-2;P61758 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 0 8 0 1 69.651 69.651 3 0.00045477 21339 TMT1-7 99.653 68.825 38.006 65.782 48.755 51.376 77.662 106.52 36 65 51 51 80 102 1 1 1 1 1 1 8339.2 5885 1398 5834 9345 12179 12179 1 FLLDAVFAK Unmodified 1022.5801 0.58006802 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 9 0 1 82.009 82.009 2 0.00095923 24312 TMT1-8 128.69 74.137 85.101 70.862 64.115 34.45 57.275 52.732 80 73 65 36 58 51 1 1 1 1 1 1 6961.3 5886 2430 5835 9346 12180 12180 1 FLLDHQGELFPSPDPSGL Unmodified 1967.9629 0.9628928 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 81.214 81.214 3 6.9711E-36 26422 TMT1-5 182.18 166.95 201.67 199.03 201.36 143.86 197.69 234.21 190 203 204 146 203 225 5 5 5 5 5 5 77910 5887 1616 5836 9347;9348 12181;12182;12183;12184;12185 12184 5 FLLELQISNNR Unmodified 1345.7354 0.73539946 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 9 0 1 70.555 70.555 2 3.8682E-08 19905 TMT1-8 140.78 75.719 61.493 72.471 63.093 57.888 92.827 82.631 58 73 65 58 94 80 1 1 1 1 1 1 13901 5888 681 5837 9349 12186 12186 1 FLLENSVLK Unmodified 1061.6121 0.61209643 2312 Q92696 RABGGTA Geranylgeranyl transferase type-2 subunit alpha yes yes 0 0 0 0 0 8 0 1 68.035 68.035 2 0.0018911 20706 TMT1-7 110.88 31.737 61.318 110.84 60.066 74.197 106.98 105.68 58 109 65 73 109 102 1 1 1 1 1 1 6949.2 5889 2312 5838 9350 12187 12187 1 FLLFSSLVTK Unmodified 1153.6747 0.67469669 1498 Q5JPE7-2;Q15155;P69849;Q5JPE7;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 0 9 0 1 82.925 82.925 2 5.7316E-06 24712 TMT1-8 144.77 86.094 46.645 73.981 32.648 36.598 42.774 45.683 44 73 36 36 44 44 1 1 1 1 1 1 4929 5890 1498 5839 9351 12188 12188 1 FLLGYFPWDSTK Unmodified 1472.734 0.73400248 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 0 9 0 1 86.602 86.602 3 0.019805 26109 TMT1-8 46.592 25.035 61.625 72.839 40.563 28.778 26.659 68.529 58 73 43 29 29 65 1 1 1 1 1 1 6311.1 5891 2245 5840 9352 12189 12189 1 FLLNNDK Unmodified 862.45487 0.45486751 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 8 0 1 54.085 54.085 2 0.0097475 15192 TMT1-7 111.01 43.25 161.23 156.34 181.3 97.685 159.29 104.19 152 160 181 102 160 102 1 1 1 1 1 1 8880.4 5892 199 5841 9353 12190 12190 1 FLLSDQSLLLLPEYHQR Unmodified 2071.1102 0.11022574 1861 Q15477 SKIV2L Helicase SKI2W yes yes 0 0 0 0 0 8 0 1 76.054 76.054 3 2.8159E-05 23867 TMT1-7 60.949 31.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5893 1861 5842 9354 12191 12191 1 FLLSESGSGK Unmodified 1023.5237 0.52367535 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 7.5 0.5 1 1 55.214 55.214 2 0.00053113 15507 TMT1-6 114.5 65.078 483.06 651.99 675.3 570.17 611.61 677.58 457 654 686 569 632 652 4 4 4 4 4 4 58916 5894 787 5843 9355;9356 12192;12193;12194;12195 12192 4 FLLSLPEHR Unmodified 1110.6186 0.61857879 1810 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 8 0 1 56.464 56.464 3 0.00049774 16162 TMT1-7 103.55 68.446 30.406 74.683 56.176 43.69 56.043 76.219 29 73 58 44 58 73 1 1 1 1 1 1 8414 5895 1810 5844 9357 12196 12196 1 FLLTGLLSGLPAPQFAIR Unmodified 1913.1139 0.11385455 2585 Q9BZH6 WDR11 WD repeat-containing protein 11 yes yes 0 0 0 0 0 9 0 1 96.323 96.323 3 0.031014 29705 TMT1-8 36.043 19.1 7.2348 30.018 20.975 22.254 28.791 15.168 7 29 22 22 29 15 1 1 1 1 1 1 3679.1 5896 2585 5845 9358 12197 12197 1 FLMANGQLVK Unmodified 1119.6111 0.61105057 1217;972 P50395;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 9 0 1 61.876 61.876 2 4.2886E-07 16461 TMT1-8 157.86 83.733 77.442 93.629 69.693 73.75 100.22 89.882 73 94 73 73 102 87 1 1 1 1 1 1 7655.5 5897 1217;972 5846 9359 12198 12198 1 FLMSLVNQVPK Unmodified 1274.7057 0.70567924 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 9 0 1 75.871 75.871 2 8.2853E-11 21978 TMT1-8 140.16 90.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5898 60 5847 9360 12199 12199 1 FLNAENAQK Unmodified 1033.5193 0.51925868 1116 P43487-2;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 0 6.5 0.5 1 1 46.452 46.452 3 0.00040618 12631 TMT1-5 106.42 60.294 207.84 252.88 200.8 228.97 265.02 352.75 196 254 210 225 275 338 2 2 2 2 2 2 29967 5899 1116 5848 9361;9362 12200;12201 12200 2 FLNALTLNMIR Unmodified 1304.7275 0.72747731 2020 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 0 0 0 9 0 1 78.099 78.099 2 0.02921 22848 TMT1-8 57.55 20.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5900 2020 5849 9363 12202 12202 1 FLNEFFLNVK Unmodified 1269.6758 0.67575932 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 2 81.838 81.838 2;3 0.0018891 24321 TMT1-8 102.52 64.22 75.959 124.94 112.03 125.68 110.91 135.42 72 124 116 123 116 130 2 2 2 2 2 2 14733 5901 1185 5850 9364;9365 12203;12204 12204 2 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR Unmodified 3626.6397 0.63972734 157 O43169 CYB5B Cytochrome b5 type B yes yes 0 0 0 0 0 3 0 1 70.582 70.582 4 1.2067E-10 23346 TMT1-2 68.589 58.792 23.421 21.616 12.723 46.951 20.326 15.41 22 22 15 44 22 15 1 1 1 1 1 1 9999 5902 157 5851 9366 12205 12205 1 FLNLTENDIQK Unmodified 1333.6878 0.68778057 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 64.028 64.028 3 5.1249E-07 19623 TMT1-5 130.1 89.104 123.51 212.42 161.18 137.91 176.24 196.44 117 210 167 138 181 189 2 2 2 2 2 2 33169 5903 1669 5852 9367;9368 12206;12207 12206 2 FLNWATPNL Unmodified 1074.5498 0.54983053 202 O43772 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes yes 0 0 0 0 0 9 0 1 85.905 85.905 2 0.0040328 25873 TMT1-8 104.37 87.439 30.629 66.667 25.574 37.024 42.498 53.153 29 65 29 36 44 51 1 1 1 1 1 1 12011 5904 202 5853 9369 12208 12208 1 FLPEGCQPLVSSAVDR Unmodified 1773.872 0.8719693 2132 Q86YW5;Q86YW5-2 TREML1 Trem-like transcript 1 protein yes no 0 0 0 0 0 5.5 0.5 1 1 62.405 62.405 3 3.4997E-20 18863 TMT1-4 161.09 138.17 238.28 319.03 258.27 279.35 310.24 308.82 225 319 269 275 319 298 3 3 3 3 3 3 163070 5905 2132 5854 9370;9371 12209;12210;12211 12209 3 FLPEGCQPLVSSAVDRR Unmodified 1929.9731 0.97308033 2132 Q86YW5;Q86YW5-2 TREML1 Trem-like transcript 1 protein yes no 0 0 0 0 1 7 0 1 54.699 54.699 3 3.8483E-10 15374 TMT1-6 114.28 108.47 215.44 186.78 242.13 190.96 237.59 288.5 203 193 243 192 245 277 1 1 1 1 1 1 50017 5906 2132 5855 9372 12212 12212 1 FLPEILALQR Unmodified 1198.7074 0.7073938 1999 Q63HN8;Q63HN8-4;Q63HN8-6 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 76.743 76.743 2 0.014533 22332 TMT1-8 72.928 35.553 22.946 44.038 73.634 58.234 41.01 68.12 22 44 73 58 44 65 1 1 1 1 1 1 7261.4 5907 1999 5856 9373 12213 12213 1 FLPFSFEHIR Unmodified 1291.6713 0.67134264 2341 Q93050-1;Q93050;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 0 9 0 1 65.49 65.49 3 0.0046812 17898 TMT1-8 66.758 31.534 37.937 81.78 46.762 74.566 71.392 44.867 36 80 51 72 73 44 1 1 1 1 1 1 7325.9 5908 2341 5857 9374 12214 12214 1 FLPLFDR Unmodified 906.49634 0.49633839 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 71.07 71.07 2 9.8215E-05 20127 TMT1-8 170.17 106.87 627.9 1038.5 710.79 693.91 835.21 976.08 594 1027 746 688 861 938 2 2 2 2 2 2 139470 5909 1395 5858 9375 12215;12216 12216 2 FLPLTQV Unmodified 816.47454 0.47454032 2533 Q9BTE1 DCTN5 Dynactin subunit 5 yes yes 0 0 0 0 0 8 0 1 78.749 78.749 2 0.034328 24923 TMT1-7 88.734 48.049 15.82 29.433 21.302 14.725 21.295 30.306 15 29 22 15 22 29 1 1 1 1 1 1 14598 5910 2533 5859 9376 12217 12217 1 FLPQPFTGEIR Unmodified 1303.6925 0.69247202 1563 Q02083;Q02083-2;Q02083-3 NAAA N-acylethanolamine-hydrolyzing acid amidase;N-acylethanolamine-hydrolyzing acid amidase subunit alpha;N-acylethanolamine-hydrolyzing acid amidase subunit beta yes no 0 0 0 0 0 8 0 1 67.033 67.033 2 0.00075491 20317 TMT1-7 72.275 31.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5911 1563 5860 9377 12218 12218 1 FLPSELR Unmodified 860.4756 0.47560295 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7 0 1 54.522 54.522 2 0.01064 15285 TMT1-6 107.22 38.129 665.74 1152.8 1106.8 753.78 1104.4 944.94 632 1143 1121 769 1120 916 1 1 1 1 1 1 155660 5912 3010 5861 9378 12219 12219 1 FLPSELRDEH Unmodified 1241.6041 0.60405094 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4.86 2.23 1 2 2 1 1 48.581 48.581 3 7.3276E-07 13660 TMT1-3 159.93 127.41 6663.1 8345.4 6130.9 5875 5493.7 9652.6 6283 8362 6402 5804 5827 9202 10 10 10 10 10 10 1452500 5913 3010 5862 9379;9380;9381;9382;9383;9384;9385 12220;12221;12222;12223;12224;12225;12226;12227;12228;12229 12223 10 FLPSPVVIK Unmodified 998.61645 0.61645353 1730 Q13618;Q13618-2;Q13618-3 CUL3 Cullin-3 yes no 0 0 0 0 0 9 0 1 67.392 67.392 2 0.0010787 18641 TMT1-8 127.56 76.687 99.685 107.47 106.78 94.516 99.006 97.379 94 109 109 94 102 94 1 1 1 1 1 1 8753 5914 1730 5863 9386 12230 12230 1 FLPSYQAVEYMR Unmodified 1502.7228 0.72278587 821 P20933 AGA N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;Glycosylasparaginase alpha chain;Glycosylasparaginase beta chain yes yes 0 0 0 0 0 7 0 1 66.712 66.712 2 0.0018047 20135 TMT1-6 88.338 76.175 23.138 52.128 34.436 28.542 58.609 21.78 22 51 36 29 58 22 1 1 1 1 1 1 6453.5 5915 821 5864 9387 12231 12231 1 FLPTEYER Unmodified 1053.5131 0.51311067 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 5 0 1 52.775 52.775 2 0.0244 15075 TMT1-4 85.813 65.331 123.22 144.51 87.441 111.68 119.4 120.25 116 145 94 109 123 116 1 1 1 1 1 1 19544 5916 356 5865 9388 12232 12232 1 FLQDCQELSLWINEK Unmodified 1921.9244 0.9243988 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6.5 0.5 1 1 81.041 81.041 3 1.2093E-07 25691 TMT1-6 106.6 76.055 99.735 115.16 91.848 79.234 145.26 110.98 94 116 95 80 146 108 3 3 3 3 3 3 16785 5917 1546 5866 9389;9390 12233;12234;12235 12234 3 FLQDYFDGNLK Unmodified 1358.6507 0.65066678 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 7 0 2 73.615 73.615 3 1.3067E-54 23027 TMT1-6 236.16 178.32 1079.7 1321.7 1360.6 1001.6 1476.5 1262.7 1020 1332 1377 1016 1497 1224 3 3 3 3 3 3 180210 5918 955 5867 9391;9392 12236;12237;12238 12237 3 FLQDYFDGNLKR Unmodified 1514.7518 0.75177781 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 8 0 1 64.357 64.357 3 1.0939E-10 19295 TMT1-7 159.77 115.34 2185.3 2709.3 1917.7 1924.8 1706.5 2986.2 2060 2715 2012 1895 1814 2847 2 2 2 2 2 2 239960 5919 955 5868 9393 12239;12240 12240 2 FLQEEAEK Unmodified 992.48148 0.48147619 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 48.892 48.892 2 0.0071328 13833 TMT1-3 103.55 76.292 177.43 335.94 192.18 192.54 137.15 347.87 168 330 205 189 151 330 1 1 1 1 1 1 25727 5920 1833 5869 9394 12241 12241 1 FLQEHLAPK Unmodified 1081.592 0.59202969 898 P26440 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 0 8 0 1 47.169 47.169 3 0.012069 12500 TMT1-7 64.297 39.915 139.07 135.17 136.4 92.228 126.8 174.4 131 138 138 94 131 167 1 1 1 1 1 1 5628 5921 898 5870 9395 12242 12242 1 FLQFAYFK Unmodified 1062.5539 0.55385327 297 O75718 CRTAP Cartilage-associated protein yes yes 0 0 0 0 0 9 0 1 75.686 75.686 2 0.0072398 21896 TMT1-8 114.6 60.053 46.509 73.603 55.811 51.502 48.648 67.902 44 73 58 51 51 65 1 1 1 1 1 1 5292.3 5922 297 5871 9396 12243 12243 1 FLQLLCENHNR Unmodified 1442.7089 0.70886714 1785;1782;1783 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643;Q14571;Q14573 ITPR1;ITPR2;ITPR3 Inositol 1,4,5-trisphosphate receptor type 1;Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3 no no 0 0 0 0 0 8.5 0.5 1 1 57.072 57.072 3 0.00031926 14520 TMT1-8 85.813 63.171 68.436 124.34 114.59 94.292 144.28 119.54 65 123 117 95 146 116 2 2 2 2 2 2 13772 5923 1785;1782;1783 5872 9397;9398 12244;12245 12245 2 FLQMCNDDPDVLPDLK Unmodified 1918.8805 0.88048508 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 76.198 76.198 3 0.00017071 24299 TMT1-4 76.85 66.751 30.723 35.63 36.055 13.574 35.75 37.356 29 36 36 15 36 36 1 1 1 1 1 1 5304.8 5924 1566 5873 9399 12246 12246 1 FLSAIVSSVDK Unmodified 1164.639 0.63903946 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 74.092 74.092 3 0.008529 21236 TMT1-8 57.885 20.865 46.579 57.61 57.499 35.145 41.265 91.564 44 58 58 36 44 87 1 1 1 1 1 1 11425 5925 1139 5874 9400 12247 12247 1 FLSAIVSSVDKIPYGMR Unmodified 1882.0023 0.0022551915 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 9 0 1 79.714 79.714 3 1.0593E-07 23458 TMT1-8 83.292 60.817 37.924 74.187 55.483 59.051 55.081 83.708 36 73 58 58 58 80 1 1 1 1 1 1 6704.3 5926 1139 5875 9401 12248 12248 1 FLSAVLAAQK Unmodified 1046.6124 0.61243078 1561 Q01968-2;Q01968 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 0 0 0 0 0 9 0 1 68.412 68.412 2 0.00045018 19056 TMT1-8 110.87 48.909 30.584 66.543 33.176 36.566 42.775 45.683 29 65 36 36 44 44 1 1 1 1 1 1 2371.7 5927 1561 5876 9402 12249 12249 1 FLSDVYPDGFK Unmodified 1286.6183 0.61830402 490 P05165-3;P05165-2;P05165 PCCA Propionyl-CoA carboxylase alpha chain, mitochondrial yes no 0 0 0 0 0 7 0 1 70.373 70.373 3 0.022669 21573 TMT1-6 52.247 24.766 46.636 65.322 41.474 44.438 62.825 90.949 44 65 44 44 65 87 1 1 1 1 1 1 4768.7 5928 490 5877 9403 12250 12250 1 FLSEIESDSLALR Unmodified 1478.7617 0.76167379 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 5 0 1 74.619 74.619 2 0.01916 23629 TMT1-4 64.918 32.078 30.687 44.164 34.857 28.971 34.492 53.382 29 44 36 29 36 51 1 1 1 1 1 1 9808.1 5929 1275 5878 9404 12251 12251 1 FLSHLVDGVK Unmodified 1113.6182 0.61824444 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 8 0 1 59.442 59.442 3 8.1383E-05 17312 TMT1-7 118.4 70.8 99.196 152.52 150.74 91.352 127.9 143.46 94 152 152 94 131 138 1 1 1 1 1 1 13403 5930 2876 5879 9405 12252 12252 1 FLSLDLQGDPR Unmodified 1259.651 0.65100113 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 6 0 1 66.856 66.856 2 0.0021611 20807 TMT1-5 94.309 70.323 77.021 155.06 88.426 80.601 83.391 113.81 73 152 94 80 87 109 1 1 1 1 1 1 22144 5931 853 5880 9406 12253 12253 1 FLSLPEVR Unmodified 959.54402 0.54401687 2635 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 0 8 0 1 63.922 63.922 2 0.0055546 19051 TMT1-7 117.1 80.122 161.65 148.88 116.33 157.38 155.23 142.68 152 152 123 153 160 138 2 2 2 2 2 2 19885 5932 2635 5881 9407 12254;12255 12254 2 FLSQESGVAQTLK Unmodified 1406.7405 0.74054442 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 7 0 1 58.811 58.811 3 9.1026E-12 16978 TMT1-6 148.68 93.256 191.72 272.26 188.84 206 245.67 215.78 181 271 199 203 251 209 1 1 1 1 1 1 49089 5933 2172 5882 9408 12256 12256 1 FLSQIESDR Unmodified 1093.5404 0.54038805 787 P19367-4;P19367-2;P19367;P19367-3;Q2TB90 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 0 0 0 0 0 5 0 1 54.138 54.138 2 5.8967E-14 15650 TMT1-4 189.38 115.76 268.03 477.14 354.74 350.73 451.47 456.16 254 471 370 348 462 440 1 1 1 1 1 1 64245 5934 787 5883 9409 12257 12257 1 FLSQLEDGGTEYVIATTK Unmodified 1970.9837 0.98368782 2365 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 0 6 0 1 75.752 75.752 3 9.8792E-08 24290 TMT1-5 93.381 73.542 23.067 67.039 33.856 21.496 28.313 30.106 22 65 36 22 29 29 1 1 1 1 1 1 4258.8 5935 2365 5884 9410 12258 12258 1 FLSQPFQVAEVFTGHMGK Oxidation (M) 2037.9982 0.99823245 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 0 9 0 2 72.609 72.609 3;4 6.1406E-05 20702 TMT1-8 62.658 44.741 91.932 161.28 101.8 134.75 125.91 143.52 87 159 109 131 131 138 2 2 2 2 2 2 15281 5936 508 5885 9411;9412 12259;12260 12260 75 2 FLSQPFQVAEVFTGHMGK Unmodified 2022.0033 0.003317824 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 9 0 2 77.517 77.517 3;4 6.7046E-28 22565 TMT1-8 147.17 122.57 261.43 356.09 303.26 261.38 309.47 385.59 247 356 312 261 320 370 3 3 3 3 3 3 103660 5937 508 5885 9413;9414 12261;12262;12263 12262 3 FLTAAEFDSVFINIPELVK Unmodified 2152.1456 0.14560819 2899 Q9UKW4-2;Q9UKW4;Q9UKW4-4 VAV3 Guanine nucleotide exchange factor VAV3 yes no 0 0 0 0 0 8 0 1 98.882 98.882 3 0.00017606 32371 TMT1-7 64.52 56.041 23.328 29.991 21.28 13.632 21.345 30.305 22 30 22 14 22 29 2 2 2 2 2 2 1031 5938 2899 5886 9415 12264;12265 12265 2 FLTAFLVQISAHSDQNK Unmodified 1917.9949 0.99486163 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 9 0 1 78.298 78.298 3 1.4118E-08 22890 TMT1-8 89.468 66.551 38.191 34.998 43.721 35.794 50.433 36.937 36 36 44 36 51 36 1 1 1 1 1 1 6997.3 5939 1616 5887 9416 12266 12266 1 FLTALAQDGVINEEALSVTELDR Unmodified 2503.2806 0.28059812 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 5 0 2 87.408 87.408 3;4 6.6021E-23 28713 TMT1-4 119.16 100.21 46.732 66.669 24.147 93.823 49.016 68.957 44 66 29 88 52 66 3 3 2 3 2 3 25552 5940 2267 5888 9417;9418 12267;12268;12269 12268 3 FLTGPLNLNDPDAK Unmodified 1513.7777 0.77765821 1527 P86791;P86790 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B yes no 0 0 0 0 0 7 0 1 69.382 69.382 3 0.040616 21187 TMT1-6 40.983 24.677 68.827 110.32 60.773 58.164 85.485 82.841 65 109 65 58 87 80 1 1 1 1 1 1 5891.3 5941 1527 5889 9419 12270 12270 1 FLTLPPVLHLQLMR Unmodified 1676.98 0.98000361 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 9 0 1 78.433 78.433 3 3.7734E-05 22976 TMT1-8 87.719 55.113 54.344 42.691 27.575 21.732 35.631 29.897 51 44 29 22 36 29 1 1 1 1 1 1 4776.9 5942 2339 5890 9420 12271 12271 1 FLTPDFTSLDVLTFAGSGIPAGINIPNYDDLR Unmodified 3438.7347 0.73473735 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 9 0 2 103.56 103.56 3;4 0.00051485 32299 TMT1-8 44.31 31.122 7.4331 15.459 0 0 0 7.462 7 15 0 0 0 7 1 1 0 0 0 1 2253.9 5943 2782 5891 9421;9422 12272;12273 12272 2 FLTVLCSR Unmodified 994.52699 0.52698659 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 9 0 1 62.587 62.587 2 0.0082218 16706 TMT1-8 94.302 56.744 130.63 136.16 111.48 116.9 172.56 118.73 123 138 116 116 174 116 1 1 1 1 1 1 22051 5944 598 5892 9423 12274 12274 1 FLTWILNR Unmodified 1061.6022 0.60220045 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 80.53 80.53 2 0.00027319 23804 TMT1-8 157.9 118.14 92.48 101.28 60.477 74.305 99.935 97.352 87 102 65 73 102 94 1 1 1 1 1 1 17115 5945 203 5893 9424 12275 12275 1 FLVECFR Unmodified 969.47422 0.47422274 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 8 0 1 61.047 61.047 2 0.029905 17937 TMT1-7 90.706 53.678 138.78 159.2 164.31 137.71 177.06 172.97 131 161 167 138 181 167 1 1 1 1 1 1 26398 5946 1773 5894 9425 12276 12276 1 FLVFNSK Unmodified 853.46979 0.46978929 991;1775 P32189-1;P32189-4;P32189-2;P32189;Q14410 GK;GK2 Glycerol kinase;Glycerol kinase 2 no no 0 0 0 0 0 9 0 1 63.554 63.554 2 0.00014215 17128 TMT1-8 129.4 60.976 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5947 991;1775 5895 9426 12277 12277 1 FLVFVANFDENDPK Unmodified 1653.8039 0.80387296 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 7.5 0.5 1 1 82.16 82.16 3 5.7324E-15 26105 TMT1-6 137.84 107.27 169.51 241.24 160.66 129.84 200.16 180.84 160 240 168 131 203 175 3 3 3 3 3 3 36357 5948 972 5896 9427;9428 12278;12279;12280 12278 3 FLVGFTNK Unmodified 924.5069 0.50690308 1113 P43307-2;P43307 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 0 9 0 2 64.384 64.384 2;3 0.0037548 17402 TMT1-8 74.127 35.889 404.88 579.9 529.57 449.82 556.59 613.06 383 579 542 450 572 590 3 3 3 3 3 3 71394 5949 1113 5897 9429;9430 12281;12282;12283 12281 3 FLVGPDGVPLR Unmodified 1168.6604 0.66044361 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 64.102 64.102 2 0.00013401 19116 TMT1-7 111.61 64.54 146.12 179.78 176.46 176.48 169.25 165.73 138 181 181 174 175 160 2 2 2 2 2 2 34006 5950 528 5898 9431;9432 12284;12285 12285 2 FLVGPDGVPLRR Unmodified 1324.7616 0.76155464 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 1 9 0 1 53.042 53.042 3 3.1543E-06 13024 TMT1-8 109.72 85.953 308.15 413.02 337.18 389.4 427.06 384.37 291 413 352 382 438 372 1 1 1 1 1 1 41698 5951 528 5899 9433 12286 12286 1 FLVHNVK Unmodified 855.49667 0.49667274 1458 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 0 9 0 1 42.336 42.336 3 0.0043179 8865 TMT1-8 84.359 36.616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5952 1458 5900 9434 12287 12287 1 FLVIEAILATDLKK Unmodified 1572.9491 0.94908063 1776 Q14432;Q13370-2;Q13370 PDE3A;PDE3B cGMP-inhibited 3',5'-cyclic phosphodiesterase A;cGMP-inhibited 3',5'-cyclic phosphodiesterase B yes no 0 0 0 0 1 9 0 1 88.457 88.457 3 0.0013874 26821 TMT1-8 69.327 46.794 46.366 64.571 87.481 57.132 55.719 67.7 44 65 87 58 58 65 1 1 1 1 1 1 4931.9 5953 1776 5901 9435 12288 12288 1 FLVIGNAGTGK Unmodified 1075.6026 0.60259438 809 P20338 RAB4A Ras-related protein Rab-4A yes yes 0 0 0 0 0 9 0 1 60.585 60.585 2 7.3165E-06 15966 TMT1-8 112.71 57.328 68.904 63.045 87.832 48.759 92.99 90.088 65 65 87 51 94 87 1 1 1 1 1 1 5076 5954 809 5902 9436 12289 12289 1 FLVIGSAGTGK Unmodified 1048.5917 0.59169534 1369 P61018;P61018-2 RAB4B Ras-related protein Rab-4B yes no 0 0 0 0 0 9 0 1 61.031 61.031 2 1.3561E-06 16149 TMT1-8 128.52 74.112 53.89 72.729 78.328 80.745 107.74 74.744 51 73 80 80 109 73 1 1 1 1 1 1 7541.9 5955 1369 5903 9437 12290 12290 1 FLVLDEADGLLSQGYSDFINR Unmodified 2371.1696 0.16959111 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 6.5 0.5 1 1 95.288 95.288 3 5.0745E-18 31500 TMT1-5 119.31 102.82 30.748 29.225 37.177 21.288 28.828 15.368 29 30 37 22 29 15 2 2 2 2 2 1 11913 5956 2291 5904 9438;9439 12291;12292 12291 2 FLVYVANFDEKDPR Unmodified 1711.857 0.85697116 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 1 8 0 2 68.292 68.292 3;4 4.8498E-07 20754 TMT1-7 105 74.519 283.44 412.44 343.87 218.62 362.14 432.06 268 411 351 225 370 415 2 2 2 2 2 2 104410 5957 1217 5905 9440;9441 12293;12294 12293 2 FLYYEMGYK Unmodified 1212.5525 0.55253264 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 67.824 67.824 2 0.0062218 20628 TMT1-7 65.465 35.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5958 1112 5906 9442 12295 12295 1 FMATNDLMTELQK Unmodified 1540.7266 0.72655062 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 7 0 1 71.668 71.668 3 1.8975E-08 22071 TMT1-6 122.39 102.71 37.902 96.792 39.991 36.342 33.09 84.336 36 94 44 36 36 80 1 1 1 1 1 1 7359.2 5959 2116 5907 9443 12296 12296 1 FMCAQLPNPVLDSISIIDTPGILSGEK Unmodified 2914.482 0.48201682 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 96.738 96.738 4 1.5784E-11 31560 TMT1-7 83.881 73.173 102.47 172.96 124.1 102.88 122.42 226.76 97 171 129 103 129 216 4 4 4 4 4 4 13133 5960 2654 5908 9444 12297;12298;12299;12300 12298 4 FMDSVIFTLYNYASNQR Unmodified 2067.9724 0.97241163 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 94.055 94.055 3 0.00017628 28867 TMT1-8 60.317 43.823 30.786 20.696 38.038 13.441 36.525 14.948 29 22 37 15 36 15 1 1 1 1 1 1 5210.3 5961 1139 5909 9445 12301 12301 1 FMELLEPLNER Unmodified 1389.6962 0.69623677 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 76.605 76.605 2 0.0097361 24607 TMT1-5 78.655 38.946 46.727 65.576 25.887 29.653 26.618 68.53 44 65 29 29 29 65 1 1 1 1 1 1 8048.1 5962 1546 5910 9446 12302 12302 1 FMELNLAQK Unmodified 1092.5638 0.56376603 1398 P61758-2;P61758 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 0 8 0 1 64.533 64.533 2 0.0016705 19329 TMT1-7 115.71 60.331 130.68 143.86 96.482 103.07 141.51 157.99 123 145 102 102 145 152 1 1 1 1 1 1 10276 5963 1398 5911 9447 12303 12303 1 FMEQVIFK Unmodified 1040.5365 0.53648865 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 8 0 1 68.727 68.727 2 0.0035185 20962 TMT1-7 131.06 64.38 1117.8 1472.8 1139.8 1012.4 1139.6 1553.7 1055 1473 1182 1008 1185 1488 1 1 1 1 1 1 164500 5964 1379 5912 9448 12304 12304 1 FMETSAK Unmodified 812.37384 0.37383999 1366 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 0 6 0 1 43.844 43.844 2 0.0041958 11710 TMT1-5 84.097 47.004 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5965 1366 5913 9449 12305 12305 1 FMETVAEK Unmodified 953.45282 0.4528186 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 5.5 0.5 1 1 52.795 52.795 2 0.0010872 15186 TMT1-4 101.54 61.439 129.98 194.8 170.87 113.56 161.97 218.17 123 194 174 116 167 209 1 1 1 1 1 1 19082 5966 639 5914 9450;9451 12306;12307 12306 2 FMLQDVLDLR Unmodified 1248.6536 0.65364367 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 8 0 1 80.944 80.944 2 0.012036 25707 TMT1-7 81.338 0 54.138 57.228 49.884 35.732 34.181 53.391 51 58 51 36 36 51 1 1 1 1 1 1 3198 5967 1584 5915 9452 12308 12308 1 FMNAVFFLLPK Unmodified 1325.7206 0.72060102 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 92.102 92.102 3 0.030369 28207 TMT1-8 44.188 28.649 30.76 28.177 36.155 21.359 28.319 30.106 29 29 36 22 29 29 1 1 1 1 1 1 2473.5 5968 1507 5916 9453 12309 12309 1 FMNPFNMPNLYQK Unmodified 1642.7636 0.76360482 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 9 0 1 76.969 76.969 3 3.9604E-05 22402 TMT1-8 83.314 63.495 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5969 986 5917 9454 12310 12310 1 FMPLSDVLYGR Unmodified 1296.6536 0.65364367 1638 Q10588;Q10588-2 BST1 ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 yes no 0 0 0 0 0 9 0 1 74.152 74.152 2 0.0035 21298 TMT1-8 82.749 55.225 30.593 43.904 50.805 35.672 34.44 45.921 29 44 51 36 36 44 1 1 1 1 1 1 4184.9 5970 1638 5918 9455 12311 12311 1 FMQASEDLLK Unmodified 1180.5798 0.57981002 846;724 P22392-2;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 0 6 0 1 64.824 64.824 2 0.0079116 19978 TMT1-5 87.298 32.69 92.267 108.24 90.511 95.132 117.78 189.59 87 109 94 94 123 181 1 1 1 1 1 1 16574 5971 846;724 5919 9456 12312 12312 1 FMQASEDLLKEHYVDLK Unmodified 2065.019 0.019027468 846;724 P22392-2;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 1 7 0 1 66.554 66.554 4 0.04722 20046 TMT1-6 37.285 23.554 53.536 118.15 99.432 80.221 68.75 114.23 51 116 102 80 73 109 1 1 1 1 1 1 6170 5972 846;724 5920 9457 12313 12313 1 FMQDPMEIFVDDETK Unmodified 1843.8008 0.80083777 1738 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 0 5 0 1 82.797 82.797 3 0.0029683 26902 TMT1-4 62.055 44.138 30.811 28.319 27.496 45.513 49.986 36.95 29 29 29 44 51 36 1 1 1 1 1 1 4073.3 5973 1738 5921 9458 12314 12314 1 FMSASQDLEPKPLFPK Unmodified 1833.9335 0.93350692 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 8 0 1 65.247 65.247 3 0.00027749 19638 TMT1-7 77.13 60.445 92.078 139.01 96.215 119.97 57.74 138 87 138 102 116 65 131 1 1 1 1 1 1 5791.8 5974 126 5922 9459 12315 12315 1 FMTILCTR Unmodified 1040.5147 0.51470735 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 63.387 63.387 2 1.2439E-05 17024 TMT1-8 166.68 116.05 184.69 220.15 152.2 152.14 261.62 280.35 174 221 160 152 266 270 1 1 1 1 1 1 72234 5975 555 5923 9460 12316 12316 1 FMVQTIFAPPNTSDMEAVWK Unmodified 2311.1017 0.10171124 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 0 9 0 1 86.771 86.771 3 3.1619E-15 26173 TMT1-8 102.37 79.931 39.141 38.899 61.133 52.485 37.599 53.293 37 40 61 52 40 51 2 2 2 2 2 2 8323.1 5976 2813 5924 9461 12317;12318 12317 2 FNADEFEDMVAEK Unmodified 1543.6501 0.65007443 912 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 0 4 0 1 71.883 71.883 3 7.4253E-11 22849 TMT1-3 131.32 112.19 115.88 145.51 57.374 81.744 121.03 112.74 109 145 65 80 123 109 1 1 1 1 1 1 21529 5977 912 5925 9462 12319 12319 1 FNAHEFATLVIDILSDAK Unmodified 2003.0364 0.036392091 1758 Q14161-11;Q14161-7;Q14161-6;Q14161-10;Q14161-8;Q14161-4;Q14161-5;Q14161-3;Q14161;Q14161-2 GIT2 ARF GTPase-activating protein GIT2 yes no 0 0 0 0 0 9 0 2 99.451 99.451 3;4 0.00010271 30928 TMT1-8 60.062 46.099 30.667 67.046 66.426 18.159 44.376 54.166 29 66 66 21 45 52 2 3 3 3 3 3 4392.2 5978 1758 5926 9463;9464 12320;12321;12322 12322 3 FNAHGDANTIVCNSK Unmodified 1646.7471 0.74710314 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 6.75 0.829 2 1 1 41.673 41.673 3 8.2014E-15 10751 TMT1-5 130.01 119.63 396.58 594.21 470.68 296.1 373.59 512.75 375 591 482 303 387 491 3 3 3 3 3 3 132090 5979 586 5927 9465;9466;9467;9468 12323;12324;12325;12326 12323 4 FNALFAQGNYSEAAK Unmodified 1629.7787 0.77872084 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 0 1 64.062 64.062 3 0.00010458 19169 TMT1-7 79.771 52.742 91.79 130.66 151.69 100.33 112.33 127.91 87 131 152 102 116 123 1 1 1 1 1 1 17729 5980 1540 5928 9469 12327 12327 1 FNASQLITQR Unmodified 1176.6251 0.62512073 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 9 0 1 53.495 53.495 2 0.00041215 13196 TMT1-8 115.57 65.761 61.293 94.579 78.006 57.708 55.142 83.706 58 94 80 58 58 80 1 1 1 1 1 1 9279.3 5981 2479 5929 9470 12328 12328 1 FNDPHVK Unmodified 855.4239 0.42390173 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 6 0 1 36.472 36.472 3 0.02122 8730 TMT1-5 66.258 35.688 84.813 124.03 67.478 81.698 91.476 90.132 80 123 73 80 94 87 1 1 1 1 1 1 7758 5982 293 5930 9471 12329 12329 1 FNECGHVLYADIK Unmodified 1564.7344 0.73441319 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 6 0 1 52.861 52.861 3 0.00011846 15272 TMT1-5 91.207 67.878 130.37 190.49 108.59 108.55 219.01 117.41 123 189 116 109 218 116 1 1 1 1 1 1 18835 5983 1261 5931 9472 12330 12330 1 FNEEHIPDSPFVVPVASPSGDAR Unmodified 2466.1816 0.18155278 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 1.87 1 1 1 1 64.678 64.678 3 1.1581E-17 19774 TMT1-5 108.5 88.056 657 824.09 690.33 564.21 706.42 727.11 620 827 710 566 724 701 10 10 10 10 10 10 849880 5984 831 5932 9473;9474;9475;9476 12331;12332;12333;12334;12335;12336;12337;12338;12339;12340 12340 10 FNEEVKK Unmodified 892.46543 0.46543219 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 6 0 1 39.31 39.31 3 0.029297 9986 TMT1-5 69.905 26.781 1504.7 2041.8 1825 1531.8 1861.7 2280.3 1422 2043 1870 1533 1922 2189 1 1 1 1 1 1 1381700 5985 484 5933 9477 12341 12341 1 FNFLEQAFDK Unmodified 1257.603 0.60298831 2389 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 0 8 0 2 77.689 77.689 2;3 0.00033267 24445 TMT1-7 122.69 67.627 100.76 107.39 107.08 87.664 113.69 105.49 95 109 109 88 116 102 2 2 2 2 2 2 21216 5986 2389 5934 9478;9479 12342;12343 12342 2 FNFLNPNDPYHAYYR Unmodified 1929.8798 0.87983187 1860 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 0 8 0 1 62.753 62.753 3 0.00019182 18645 TMT1-7 78.191 66.671 54.018 73.085 56.531 35.183 42.326 60.62 51 73 58 36 44 58 1 1 1 1 1 1 9900.9 5987 1860 5935 9480 12344 12344 1 FNGIVEDFNYGTLLR Unmodified 1756.8784 0.87843489 2550 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 0 7 0 1 78.773 78.773 3 0.0060854 24832 TMT1-6 54.281 39.405 23.293 28.814 28.206 29.766 13.274 30.535 22 29 29 29 15 29 1 1 1 1 1 1 2789.3 5988 2550 5936 9481 12345 12345 1 FNGTHIPGSPFK Unmodified 1300.6564 0.65642086 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8.5 0.5 1 1 54.708 54.708 3 0.00060026 12385 TMT1-8 77.185 50.086 4190.6 4569.5 4697.3 3492.3 4281.6 5400.8 3953 4634 4758 3525 4424 5181 3 3 3 3 3 3 534210 5989 831 5937 9482;9483 12346;12347;12348 12348 3 FNHLGHIFTFTPQNNEFQLQLSPK Unmodified 2856.4347 0.43474777 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 69.215 69.215 4 1.3773E-10 19371 TMT1-8 72.564 50.965 54.06 64.568 56.658 43.814 47.939 98.836 51 65 58 44 51 94 1 1 1 1 1 1 12826 5990 471 5938 9484 12349 12349 1 FNILGTHTK Unmodified 1029.5607 0.56072956 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 9 0 1 48.642 48.642 3 0.0031616 11254 TMT1-8 72.434 33.416 266.46 395.8 325.66 335.98 339.75 470 252 394 338 331 355 450 1 1 1 1 1 1 12855 5991 1091 5939 9485 12350 12350 1 FNKPFVFLMIEQNTK Unmodified 1854.9702 0.97022678 407 P01009 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 0 0 0 0 1 9 0 1 75.843 75.843 3 2.3837E-05 21954 TMT1-8 77.746 47.613 53.841 80.146 80.355 25.261 87.548 66.792 51 80 80 29 87 65 1 1 1 1 1 1 10102 5992 407 5940 9486 12351 12351 1 FNLDLSTVTQAFLK Unmodified 1595.8559 0.85590853 2784 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 0 0 0 0 0 9 0 1 89.298 89.298 3 0.0020004 27165 TMT1-8 57.53 32.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5993 2784 5941 9487 12352 12352 1 FNLTYVSHDGDDK Unmodified 1509.6736 0.67358707 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 50.87 50.87 3 0.00016562 14349 TMT1-4 89.471 63.353 145.98 174.01 203.86 103.46 187.27 165.22 138 176 203 109 189 160 1 1 1 1 1 1 15197 5994 902 5942 9488 12353 12353 1 FNNWGGSLSLGHPFGATGCR Unmodified 2133.9803 0.98029097 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 9 0 1 62.12 62.12 3 1.3494E-08 16565 TMT1-8 74.364 57.484 54.401 42.849 17.877 69.193 41.825 29.721 51 44 22 65 44 29 1 1 1 1 1 1 10526 5995 1312 5943 9489 12354 12354 1 FNPETDYLTGTDGK Unmodified 1556.6995 0.69946747 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 5 0 1 59.654 59.654 3 0.0007792 17801 TMT1-4 73.758 55.862 84.701 101.05 105.85 125.75 126.32 143.5 80 102 109 123 131 138 1 1 1 1 1 1 12732 5996 2492 5944 9490 12355 12355 1 FNPETDYLTGTDGKK Unmodified 1684.7944 0.79443049 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 6 0 1 53.428 53.428 3 0.00015704 15507 TMT1-5 80.738 71.208 279.26 326.53 216.96 196.02 338.75 260.03 263 328 228 197 341 253 1 1 1 1 1 1 26351 5997 2492 5945 9491 12356 12356 1 FNPFVTSDR Unmodified 1081.5193 0.51925868 1387 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 0 7.5 0.5 1 1 56.435 56.435 2 1.1675E-08 16154 TMT1-7 169.09 108.29 331.34 349.62 280.86 230.61 331.01 286.9 312 354 290 232 336 278 2 2 2 2 2 2 58294 5998 1387 5946 9492;9493 12357;12358 12358 2 FNPILDMLAALK Unmodified 1344.7475 0.74754405 2345 Q93100-4;Q93100-3;Q93100-2;Q93100 PHKB Phosphorylase b kinase regulatory subunit beta yes no 0 0 0 0 0 9 0 1 98.74 98.74 3 0.0007768 30525 TMT1-8 72.34 47.487 15.948 22.235 5.8464 7.0284 14.576 23.036 15 22 7 7 15 22 1 1 1 1 1 1 1153.7 5999 2345 5947 9494 12359 12359 1 FNPVLYPK Unmodified 976.5382 0.53820321 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 9 0 1 58.912 58.912 2 0.023046 15289 TMT1-8 75.854 44.482 107.84 141.3 150.65 107.53 139.62 207.08 102 142 152 109 145 198 1 1 1 1 1 1 15171 6000 2004 5948 9495 12360 12360 1 FNQLPVELK Unmodified 1086.6073 0.6073454 2749 Q9NUJ1;Q9NUJ1-2 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 0 7 0 1 63.719 63.719 3 0.0014188 18943 TMT1-6 93.111 46.952 99.854 100.38 84.361 72.886 99.707 105.89 94 102 87 73 102 102 1 1 1 1 1 1 8720.4 6001 2749 5949 9496 12361 12361 1 FNQVLDQFGEK Unmodified 1323.6459 0.64591575 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 7 0 1 66.753 66.753 3 0.0072144 20116 TMT1-6 64.827 33.396 91.961 153.8 103.31 110.9 110.79 158.87 87 152 109 109 116 152 1 1 1 1 1 1 14208 6002 162 5950 9497 12362 12362 1 FNSLNELVDYHR Unmodified 1505.7263 0.72629134 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 6 0 1 57.99 57.99 3 4.774E-09 17337 TMT1-5 139.78 124.9 231.01 297.54 236.36 266.71 296.17 278.3 218 298 247 262 304 269 2 2 2 2 2 2 56312 6003 1464 5951 9498 12363;12364 12364 2 FNTANDDNVTQVR Unmodified 1492.6906 0.69063412 457 P04040 CAT Catalase yes yes 0 0 0 0 0 3.5 0.5 1 1 42.617 42.617 3 2.1692E-21 11303 TMT1-3 145.81 116.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6004 457 5952 9499;9500 12365;12366 12366 2 FNTGPVGK Unmodified 818.42865 0.42865276 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 44.12 44.12 2 0.013375 11298 TMT1-7 95.358 52.894 115.75 106.28 112.96 125.47 118.76 120.27 109 109 116 123 123 116 1 1 1 1 1 1 7822.9 6005 2028 5953 9501 12367 12367 1 FNVGEDCPVFDGLFEFCQLSTGGSVASAVK Unmodified 3236.4795 0.47945064 1717 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 0 7 0 1 93.882 93.882 4 0.0067323 30499 TMT1-6 37.348 31.628 23.303 45.032 12.738 15.098 28.607 30.098 22 44 15 15 29 29 1 1 1 1 1 1 4714.2 6006 1717 5954 9502 12368 12368 1 FNVLHWHIVDDQSFPYQSITFPELSNK Unmodified 3260.5931 0.59309891 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 9 0 1 78.937 78.937 4 4.3596E-13 23197 TMT1-8 74.748 57.246 15.777 29.314 28.588 21.367 51.866 14.51 15 29 29 22 51 15 1 1 1 1 1 1 4029 6007 539 5955 9503 12369 12369 1 FNVLQYVVPEVK Unmodified 1433.7919 0.79185171 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 80.061 80.061 2 6.5646E-09 23589 TMT1-8 141.88 93.239 46.753 50.536 34.399 28.85 42.361 68.081 44 51 36 29 44 65 1 1 1 1 1 1 7898.7 6008 1754 5956 9504 12370 12370 1 FNVSYLK Unmodified 869.4647 0.46470391 1593 Q05315 CLC Galectin-10 yes yes 0 0 0 0 0 9 0 1 58.32 58.32 2 0.0097689 15029 TMT1-8 122.74 78.021 410.21 361.95 179.84 189.7 327.31 114.32 385 369 196 189 325 116 1 1 1 1 1 1 29142 6009 1593 5957 9505 12371 12371 1 FNVWDTAGQEK Unmodified 1293.599 0.59896556 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 6.5 0.5 1 1 59.592 59.592 3 0.00014461 17281 TMT1-6 101.89 73.605 601.87 891.47 700.72 707.89 937.32 968.9 569 887 729 702 959 934 3 3 3 3 3 3 163140 6010 1445 5958 9506;9507 12372;12373;12374 12374 3 FNVWDVGGQDK Unmodified 1263.5884 0.58840088 1436 P62330 ARF6 ADP-ribosylation factor 6 yes yes 0 0 0 0 0 6.5 0.5 1 1 64.361 64.361 3 0.0029506 19177 TMT1-6 75.088 47.657 177.05 224.64 168.85 137.58 169.48 180.65 167 225 175 138 174 174 2 2 2 2 2 2 30850 6011 1436 5959 9508;9509 12375;12376 12376 2 FNWYVDGVEVHNAK Unmodified 1676.7947 0.79470526 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region yes no 0 0 0 0 0 7 0 1 58.685 58.685 3 1.8652E-11 16906 TMT1-6 128.9 90.109 245.13 573.74 333.17 294.55 252.29 422.4 233 560 353 292 268 403 1 1 1 1 1 1 97827 6012 420 5960 9510 12377 12377 1 FNYGFEYLGVQDK Unmodified 1578.7355 0.73545904 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 70.747 70.747 3 0.006122 21765 TMT1-6 61.409 42.334 68.939 86.885 61.854 65.446 101.66 58.927 65 87 65 65 102 58 1 1 1 1 1 1 13449 6013 1763 5961 9511 12378 12378 1 FPAIQNLALR Unmodified 1141.6608 0.66077796 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 9 0 1 65.399 65.399 2 0.035969 17858 TMT1-8 58.426 19.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6014 568 5962 9512 12379 12379 1 FPAMSDAYDR Unmodified 1171.4968 0.49680868 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 5 0 1 52.702 52.702 2 0.0097683 15131 TMT1-4 84.615 58.878 30.245 89.344 70.884 58.113 56.186 52.763 29 87 73 58 58 51 1 1 1 1 1 1 13802 6015 394 5963 9513 12380 12380 1 FPDAGEDELLK Unmodified 1232.5925 0.5924832 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 63.51 63.51 2 0.0034484 19607 TMT1-3 90.149 30.349 84.844 116.55 68.692 64.497 130.46 105.01 80 116 73 65 131 102 1 1 1 1 1 1 10967 6016 1139 5964 9514 12381 12381 1 FPDATEDELLK Unmodified 1276.6187 0.61869795 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 4 0 2 64.193 64.193 2 1.5664E-08 19921 TMT1-3 123.79 73.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6017 1723 5965 9515;9516 12382;12383 12383 2 FPDELAHVEK Unmodified 1183.5873 0.58733824 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 5 0 1 52.528 52.528 3 0.0097367 15093 TMT1-4 64.439 42.241 122.58 166.47 176.71 167.17 256.77 218.66 116 167 180 167 260 212 1 1 1 1 1 1 34570 6018 228 5966 9517 12384 12384 1 FPDENFK Unmodified 895.40758 0.40758296 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 5.5 0.5 1 1 53.112 53.112 3 0.0098814 15298 TMT1-4 81.32 29.533 286.08 838.55 620.91 493.32 685.68 694.65 274 816 642 497 700 670 2 2 2 2 2 2 66329 6019 858 5967 9518;9519 12385;12386 12385 2 FPDENFTLK Unmodified 1109.5393 0.53932542 958 P30405;P30405-2 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 63.258 63.258 2 0.00040662 19249 TMT1-5 138.66 75.173 966.56 1153.9 1222.7 885.82 1097.1 1348.1 913 1165 1235 896 1132 1294 4 4 4 4 4 4 131970 6020 958 5968 9520;9521 12387;12388;12389;12390 12387 4 FPEDGPELEEILTQLATADAR Unmodified 2314.1329 0.13287125 2782 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 5 0 1 94.471 94.471 3 6.4601E-14 31220 TMT1-4 109.37 86.24 7.4331 22.799 6.4327 31.859 29.14 22.62 7 22 7 30 30 22 1 2 1 2 2 2 5085.9 6021 2782 5969 9522 12391;12392 12392 2 FPEEEAPSTVLSQNLFTPK Unmodified 2133.063 0.063000772 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 6 0 1 74.708 74.708 4 0.0071579 23835 TMT1-5 44.577 25.502 54.02 73.091 56.147 43.804 50.065 36.947 51 73 58 44 51 36 1 1 1 1 1 1 9607.2 6022 479 5970 9523 12393 12393 1 FPEHELTFDPQR Unmodified 1514.7154 0.7153923 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 51.548 51.548 3 1.3028E-05 14557 TMT1-4 107.97 95.698 270.44 364.24 224.56 242.94 319.02 314.96 255 363 239 240 326 304 3 3 3 3 3 3 38552 6023 3017 5971 9524;9525 12394;12395;12396 12395 3 FPELNYQLK Unmodified 1150.6023 0.60226003 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 8 0 1 64.683 64.683 3 0.011441 19363 TMT1-7 64.841 35.923 84.705 108.61 98.779 104.19 74.977 114.05 80 109 102 102 80 109 1 1 1 1 1 1 7476.3 6024 1073 5972 9526 12397 12397 1 FPFELVK Unmodified 878.49019 0.49019038 1226;1591 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 0 0 9 0 1 71.729 71.729 2 0.013602 20365 TMT1-8 108.09 0 314.4 303.92 282.4 283.78 288.42 359.54 296 310 291 280 300 345 1 1 1 1 1 1 30071 6025 1226;1591 5973 9527 12398 12398 1 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK Unmodified 3506.6783 0.6782851 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 9 0 1 94.39 94.39 4 2.9866E-06 29112 TMT1-8 50.229 40.081 0 7.448 0 0 0 7.462 0 7 0 0 0 7 0 1 0 0 0 1 2091.3 6026 293 5974 9528 12399 12399 1 FPGINYPVLTPNLK Unmodified 1571.8712 0.87116466 1032 P35914;P35914-3;P35914-2 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes no 0 0 0 0 0 9 0 1 74.799 74.799 3 1.4757E-07 21523 TMT1-8 108.17 80.201 46.512 81.167 48.844 27.703 57.585 52.723 44 80 51 29 58 51 1 1 1 1 1 1 18109 6027 1032 5975 9529 12400 12400 1 FPGQLNADLR Unmodified 1129.588 0.58800695 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 0 0 0 5.8 2.64 1 2 1 1 54.593 54.593 2;3 2.5983E-14 15424 TMT1-6 187.22 126.53 5674.9 6971.9 5847.1 4639.8 5294.7 7139.3 5354 7004 6008 4655 5500 6839 12 12 12 12 12 12 823730 6028 537;1493;1932;2650;1713 5976 9530;9531;9532;9533;9534 12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412 12410 12 FPGQLNADLRK Unmodified 1257.683 0.68296996 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 0 0 1 8.25 0.433 3 1 50.563 50.563 2;3;4 0.00052397 11967 TMT1-8 94.791 60.831 2477.8 3197 2119 2106.7 1916.2 3701.9 2336 3195 2234 2076 2046 3524 5 5 5 5 5 5 350730 6029 537;1493;1932;2650;1713 5977 9535;9536;9537;9538 12413;12414;12415;12416;12417 12416 5 FPGYDSESK Unmodified 1028.4451 0.44509068 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 5 0 1 48.167 48.167 2 0.030071 13294 TMT1-4 73.985 23.378 61.189 118.04 75.545 81.37 83.355 113.82 58 116 80 80 87 109 1 1 1 1 1 1 10355 6030 1132 5978 9539 12418 12418 1 FPHLFTGK Unmodified 945.50724 0.50723743 267;2923 O75351;Q9UN37 VPS4B;VPS4A Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A no no 0 0 0 0 0 9 0 1 54.317 54.317 3 0.023897 13457 TMT1-8 50.607 33.221 69.2 48.756 50.342 35.158 63.252 90.937 65 51 51 36 65 87 1 1 1 1 1 1 6625.6 6031 267;2923 5979 9540 12419 12419 1 FPHSAHQK Unmodified 950.47225 0.47224891 1231 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 0 7.75 0.829 2 1 1 26.143 26.143 3;4 0.0029815 4372 TMT1-7 89.296 63.737 217.23 397.37 303.34 257.62 334.76 263.34 206 392 314 258 340 256 4 4 4 4 4 4 17779 6032 1231 5980 9541;9542;9543;9544 12420;12421;12422;12423 12422 4 FPILGVHLK Unmodified 1022.6277 0.62768692 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 9 0 1 62.512 62.512 3 0.0016018 16779 TMT1-8 91.853 71.153 347.74 280.3 287.94 357.45 421.87 486.85 327 290 298 350 435 468 2 2 2 2 2 2 43168 6033 2085 5981 9545 12424;12425 12425 2 FPLFGGWK Unmodified 950.50142 0.50142377 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 9 0 1 76.082 76.082 2 0.003108 21996 TMT1-8 132.22 70.379 356.17 667.27 528.02 469.7 492.36 812.1 338 658 546 467 518 775 2 2 2 2 2 2 94919 6034 478 5982 9546 12426;12427 12426 2 FPLKPGVPLPSPEDLR Unmodified 1760.9825 0.98250603 1542 Q00722-3;Q00722-2;Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 yes no 0 0 0 0 1 9 0 1 67.065 67.065 3 0.034252 18536 TMT1-8 40.179 20.856 99.2 183.83 123.6 148.36 146.76 157.84 94 181 131 145 152 152 1 1 1 1 1 1 11108 6035 1542 5983 9547 12428 12428 1 FPLTTESAMK Unmodified 1123.5583 0.5583463 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 0 7 0 1 57.916 57.916 3 0.0024823 16603 TMT1-6 80.231 39.735 30.556 51.356 50.718 27.591 57.59 52.723 29 51 51 29 58 51 1 1 1 1 1 1 6093.1 6036 1441 5984 9548 12429 12429 1 FPNIGVEK Unmodified 902.48617 0.48616764 101 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 0 7 0 1 56.977 56.977 3 0.0049069 16265 TMT1-6 85.161 33.968 76.475 193.47 147.65 108.12 117.95 167.19 73 189 152 109 123 160 1 1 1 1 1 1 12465 6037 101 5985 9549 12430 12430 1 FPPFFTLQPNVDTR Unmodified 1677.8515 0.85149185 2515 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 0 9 0 1 77.837 77.837 3 0.028902 22762 TMT1-8 41.495 14.086 45.55 58.884 49.101 52.041 41.258 69.179 43 59 51 51 44 66 2 2 2 2 2 2 10739 6038 2515 5986 9550 12431;12432 12431 2 FPPVTTFSGYLLYR Unmodified 1659.8661 0.86607929 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 9 0 2 79.773 79.773 2;3 1.1679E-14 23495 TMT1-8 145.29 124.04 131.02 181.67 187.88 113.45 171.65 149.67 124 182 189 117 174 145 3 3 3 3 3 3 135830 6039 1684 5987 9551;9552 12433;12434;12435 12434 3 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG Unmodified 3219.3137 0.31370176 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 3 0 1 63.108 63.108 4 0.020432 20399 TMT1-2 27.466 24.469 23.108 59.598 33.228 45.61 26.654 46.143 22 58 36 44 29 44 1 1 1 1 1 1 15898 6040 1311 5988 9553 12436 12436 1 FPTDQLTPDQER Unmodified 1445.6787 0.67867245 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 3.67 0.471 1 2 52.06 52.06 2;3 2.9613E-25 15087 TMT1-3 200.06 183.03 344.12 592.91 632.76 308.68 643.79 577.52 327 589 632 328 648 559 3 3 3 3 3 3 205940 6041 489 5989 9554;9555;9556 12437;12438;12439;12440 12439 4 FPTLWSGAR Unmodified 1033.5345 0.53451481 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 9 0 1 62.661 62.661 2 0.028525 16736 TMT1-8 69.716 35.863 122.68 181.86 146.77 138.44 193.76 203.41 116 181 152 138 198 196 1 1 1 1 1 1 30265 6042 1915 5990 9557 12441 12441 1 FPVIQHFK Unmodified 1014.5651 0.56508666 1838 Q15257-2;Q15257;Q15257-3;Q15257-4 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 9 0 1 53.096 53.096 3 0.001093 12996 TMT1-8 113.7 81.762 245.1 415.89 292.55 252.93 385.59 342.91 232 411 305 254 391 332 2 2 2 2 2 2 16756 6043 1838 5991 9558 12442;12443 12442 2 FPVTDAVNK Unmodified 989.5182 0.51819605 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 52.662 52.662 2 0.00058524 14647 TMT1-6 133.68 68.923 130 260.69 111.66 115.21 261.86 170.55 123 255 123 116 261 167 1 1 1 1 1 1 44623 6044 1833 5992 9559 12444 12444 1 FPYESWGTPFQQLK Unmodified 1726.8355 0.83550744 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 9 0 1 75.62 75.62 2 0.00028972 21904 TMT1-8 86.189 70.299 0 15.34 37.09 21.14 36.962 22.397 0 15 36 22 37 22 0 1 1 1 1 1 4257 6045 1130 5993 9560 12445 12445 1 FPYPFQVVYDEGPLYVFSPTEELR Unmodified 2891.4058 0.40579863 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 7.5 0.5 1 1 96.284 96.284 3 1.6547E-13 31341 TMT1-6 100.94 98.629 14.743 41.367 11.88 15.977 13.411 14.541 14 40 14 15 14 14 2 2 2 1 2 2 15707 6046 1601 5994 9561;9562 12446;12447;12448 12447 3 FQACPETQVPLQLESK Unmodified 1873.9244 0.9243988 876 P24557;P24557-2;P24557-3 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 6 0 1 62.675 62.675 2 3.3906E-09 19151 TMT1-5 116.51 80.833 47.039 0 29.105 45.708 34.529 29.929 44 0 29 44 36 29 1 0 1 1 1 1 10894 6047 876 5995 9563 12449 12449 1 FQADLQTAVVVANDIK Unmodified 1730.9203 0.9202997 1964 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 0 0 6 0 1 77.355 77.355 3 0.0015177 24908 TMT1-5 63.827 44.433 23.085 51.981 43.446 20.801 34.868 53.371 22 51 44 22 36 51 1 1 1 1 1 1 5191.1 6048 1964 5996 9564 12450 12450 1 FQALKPK Unmodified 830.50142 0.50142377 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 9 0 1 44.992 44.992 3 0.017568 9821 TMT1-8 68.422 39.909 558.85 1340.6 1059 930.76 1144.2 1347.8 533 1312 1094 929 1179 1295 1 1 1 1 1 1 82822 6049 2654 5997 9565 12451 12451 1 FQAPGAR Unmodified 745.38712 0.38712229 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 7 0 1 35.346 35.346 2 0.032154 7726 TMT1-6 89.703 57.743 69.094 72.207 48.187 51.956 48.627 67.902 65 73 51 51 51 65 1 1 1 1 1 1 4858 6050 2157 5998 9566 12452 12452 1 FQAPTGEEK Unmodified 1005.4767 0.47672516 2252 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 0 5 0 1 42.82 42.82 2 0.01514 11187 TMT1-4 81.865 29.87 61.353 103.38 60.483 74.871 69.802 90.75 58 102 65 73 73 87 1 1 1 1 1 1 9503.1 6051 2252 5999 9567 12453 12453 1 FQAPTGEEKESWIK Unmodified 1648.8097 0.80968662 2252 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 1 7 0 1 55.343 55.343 3 2.5162E-05 15637 TMT1-6 81.278 55.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6052 2252 6000 9568 12454 12454 1 FQATSSGPILR Unmodified 1175.6299 0.62987176 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 8 0 1 48.765 48.765 2 1.9483E-12 13118 TMT1-7 144.77 94.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6053 1723 6001 9569 12455 12455 1 FQCGNMIFDNK Unmodified 1372.5904 0.59039149 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 7 0 1 59.91 59.91 3 0.00048668 17440 TMT1-6 66.262 55.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6054 570 6002 9570 12456 12456 1 FQDGDLTLYQSNTILR Unmodified 1882.9425 0.94249171 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 6 0.816 1 1 1 67.741 67.741 3 7.1436E-55 20973 TMT1-4 218.28 161.99 537.39 675.24 720.68 509.89 534.65 775.72 508 680 727 515 559 742 5 5 5 5 5 5 235230 6055 583 6003 9571;9572;9573 12457;12458;12459;12460;12461 12457 5 FQDLGAAYEVLSDSEK Unmodified 1770.8312 0.83120992 2846 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 0 5 0 1 75.819 75.819 3 0.0002618 24168 TMT1-4 75.239 49.373 106.94 121.36 137.4 92.01 135.2 143.25 101 123 138 94 138 138 2 2 2 2 2 2 23522 6056 2846 6004 9574 12462;12463 12463 2 FQDLGAAYEVLSDSEKR Unmodified 1926.9323 0.93232095 2846 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 1 6 0 1 68.471 68.471 3 1.5854E-05 21432 TMT1-5 65.274 40.986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6057 2846 6005 9575 12464 12464 1 FQDLVDAVR Unmodified 1061.5506 0.55055881 554;32 CON__Q28194;P07996 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 0.5 1 1 63.752 63.752 2 9.6687E-09 19520 TMT1-5 170.95 110.36 416.65 522.86 584.88 498.13 718.12 657.48 394 527 592 500 730 636 3 3 3 3 3 3 142340 + 6058 32;554 6006 9576;9577 12465;12466;12467 12466 3 FQDNFEFVQWFK Unmodified 1633.7565 0.75652884 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 8.25 0.433 3 1 85.223 85.223 2;3;4 1.6969E-13 27333 TMT1-7 173.71 142.48 283.4 408.01 354.38 280.14 370.16 390.25 268 407 363 282 379 376 5 5 5 5 5 5 111240 6059 1868 6007 9578;9579;9580;9581 12468;12469;12470;12471;12472 12469 5 FQDNLDFIQWFK Unmodified 1599.7722 0.7721789 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 8.5 0.5 2 2 88.61 88.61 2;3 5.6797E-17 26829 TMT1-8 173.71 134.13 502.75 663.6 601.9 524.14 559.8 724.9 475 665 617 522 582 695 5 5 5 5 5 5 237270 6060 1862 6008 9582;9583;9584;9585 12473;12474;12475;12476;12477 12476 5 FQDTAEALAAFTALMEGK Unmodified 1912.9241 0.92406445 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 8.5 0.5 1 1 98.549 98.549 3 6.7327E-10 30411 TMT1-8 86.8 60.071 39.154 66.783 47.932 68.382 47.802 107.37 37 66 51 66 51 102 2 3 3 3 2 3 4665.2 6061 2977 6009 9586;9587 12478;12479;12480;12481 12481 4 FQDTDGK Unmodified 809.35555 0.35554739 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 4 0 1 38.365 38.365 2 0.0072987 9646 TMT1-3 129.55 91.996 476.08 839.82 606.02 537.26 837.3 515.5 451 829 631 539 841 506 1 1 1 1 1 1 64079 6062 1260 6010 9588 12482 12482 1 FQDTDGKHLLPK Unmodified 1397.7303 0.73031409 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 7 0 1 47.304 47.304 4 0.011149 12447 TMT1-6 59.898 33.169 115.05 213.36 138.99 101.49 91.21 315.07 109 210 145 102 102 298 1 1 1 1 1 1 10052 6063 1260 6011 9589 12483 12483 1 FQDTSQYVCAELQALEQEQR Unmodified 2442.1122 0.11215258 2173 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 yes yes 0 0 0 0 0 4 0 1 77.967 77.967 3 2.4564E-13 25264 TMT1-3 105.96 95.404 14.947 14.952 0 7.3668 15.11 7.0308 14 15 0 7 15 7 1 1 0 1 1 1 4567.9 6064 2173 6012 9590 12484 12484 1 FQDVGPQAPVGSVYQK Unmodified 1718.8628 0.86278482 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 6.5 0.5 1 1 57.476 57.476 3 4.8368E-21 16491 TMT1-6 166.46 145.51 308.5 415.06 276.93 233.36 255.46 442.56 291 414 290 233 269 422 3 3 3 3 3 3 62852 6065 2887 6013 9591;9592 12485;12486;12487 12487 3 FQEFSNIVIPLIK Unmodified 1546.8759 0.87591569 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 9 0 1 85.593 85.593 3 2.3342E-05 25741 TMT1-8 88.163 56.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6066 1994 6014 9593 12488 12488 1 FQEGQEEER Unmodified 1150.4891 0.48908076 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 2 0.816 1 1 1 31.84 31.84 2 2.0709E-13 7753 TMT1-1 181.55 133.68 632.82 904.16 898.75 662.46 807.95 989.64 599 904 911 669 834 950 5 5 5 5 5 5 219390 6067 393 6015 9594;9595;9596 12489;12490;12491;12492;12493 12490 5 FQEHLQLQNLGINPANIGFSTLTMESDKFICIR Unmodified 3833.9233 0.92329995 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 9 0 1 82.236 82.236 4 8.2936E-06 24431 TMT1-8 49.942 40.561 7.1483 38.411 28.4 14.301 21.314 30.306 7 37 29 15 22 29 1 1 1 1 1 1 6306.5 6068 1540 6016 9597 12494 12494 1 FQESEERPK Unmodified 1148.5462 0.54620171 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 1 4 0 1 32.76 32.76 3 0.0013134 7461 TMT1-3 100.88 33.153 409.93 605.64 560.97 389.79 568.58 648.96 388 604 570 397 582 624 1 1 1 1 1 1 35748 6069 1009 6017 9598 12495 12495 1 FQFDGDKK Unmodified 983.47125 0.47124585 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 7 0 1 46.152 46.152 3 0.023482 11961 TMT1-6 67.563 55.349 1011.4 1490.4 1156 1026 1411.4 1511.8 956 1483 1198 1026 1444 1456 1 1 1 1 1 1 136830 6070 1260 6018 9599 12496 12496 1 FQGEDTVVIASKPYAFDR Unmodified 2042.0109 0.010905622 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 1 6 0 1 60.416 60.416 3 8.4224E-06 18289 TMT1-5 85.046 72.766 61.421 87.381 62.52 50.678 71.171 83.249 58 87 65 51 73 80 1 1 1 1 1 1 13404 6071 998 6019 9600 12497 12497 1 FQGVACLDK Unmodified 1036.5012 0.50116577 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 7 0 1 53.86 53.86 2 0.00066562 15036 TMT1-6 131.44 78.273 68.15 147.29 143.23 100.56 127.22 150.94 65 145 145 102 131 145 1 1 1 1 1 1 15315 6072 1079 6020 9601 12498 12498 1 FQHGVIAAVDSR Unmodified 1298.6731 0.67313356 922 P28062-2;P28062 PSMB8 Proteasome subunit beta type-8 yes no 0 0 0 0 0 6 0 1 42.384 42.384 3 1.5037E-07 11099 TMT1-5 117.41 105.77 115.45 160.48 117.97 110.02 111.08 151.4 109 160 123 109 116 145 1 1 1 1 1 1 43224 6073 922 6021 9602 12499 12499 1 FQHLHGRPPQPWDPVDAETVVGLAR Unmodified 2821.4412 0.44123013 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 1 7 0 1 57.944 57.944 5 3.4366E-05 16687 TMT1-6 57.278 53.711 76.765 209.39 85.489 73.395 69.064 114.22 73 203 94 73 73 109 1 1 1 1 1 1 9635.9 6074 1081 6022 9603 12500 12500 1 FQHPGSDMR Unmodified 1073.4713 0.47126263 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6.5 1.5 1 1 30.017 30.017 3 0.0013758 5856 TMT1-7 93.598 63.027 130.25 158.84 156.59 118 203.32 226.59 123 160 159 120 207 218 2 2 2 2 2 2 22563 6075 372 6023 9604;9605 12501;12502 12502 2 FQHVGTSVFLSVTGEQYGSPIR Unmodified 2408.2125 0.21245898 2691 Q9HCN8 SDF2L1 Stromal cell-derived factor 2-like protein 1 yes yes 0 0 0 0 0 9 0 1 64.701 64.701 3 2.0834E-06 17581 TMT1-8 62.765 43.933 30.961 4.9924 22.007 30.121 14.064 7.0607 29 7 22 29 15 7 1 1 1 1 1 1 5275.2 6076 2691 6024 9606 12503 12503 1 FQIATVTEK Unmodified 1035.5601 0.56006086 925 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 0 0 0 7 0 1 55.651 55.651 2 0.0004817 15715 TMT1-6 136.57 75.594 237.83 393.33 271.08 231.76 359.21 317.01 225 389 283 233 364 307 2 2 2 2 2 2 35628 6077 925 6025 9607 12504;12505 12504 2 FQIEANFPR Unmodified 1120.5665 0.56654322 2384 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 0 0 7 0 1 58.688 58.688 2 0.011216 16983 TMT1-6 87.258 42.811 76.955 139.76 112.53 94.494 81.946 137.31 73 138 116 94 87 131 1 1 1 1 1 1 11539 6078 2384 6026 9608 12506 12506 1 FQIGDYLDIAITPPNR Unmodified 1831.9468 0.9468488 66 O00422;O00422-2 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 0 7 0 2 81.76 81.76 3 4.5847E-06 25943 TMT1-6 72.819 54.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6079 66 6027 9609;9610 12507;12508 12507 2 FQIINNTEGDWWEAR Unmodified 1877.8697 0.86966111 549 P07947 YES1 Tyrosine-protein kinase Yes yes yes 0 0 0 0 0 6 0 1 72.949 72.949 3 3.0088E-06 23192 TMT1-5 101.39 90.918 38.076 50.867 49.64 51.579 64.073 45.076 36 51 51 51 65 44 1 1 1 1 1 1 6539.2 6080 549 6028 9611 12509 12509 1 FQILNDEIITILDK Unmodified 1673.924 0.9239881 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 7 0 2 92.876 92.876 2;3 1.3048E-05 30147 TMT1-6 97.417 61.68 91.959 122.5 130.1 85.886 135.23 150.71 87 123 131 88 138 145 2 2 2 2 2 2 23054 6081 2079 6029 9612;9613 12510;12511 12511 2 FQILNSSEGDWWEAR Unmodified 1836.8431 0.84311201 505 P06241-3;P06241-2;P06241 FYN Tyrosine-protein kinase Fyn yes no 0 0 0 0 0 6 0 1 74.451 74.451 3 8.0561E-08 23762 TMT1-5 110.06 107.05 30.572 58.956 41.561 28.581 33.997 68.32 29 58 43 29 36 65 1 1 1 1 1 1 21644 6082 505 6030 9614 12512 12512 1 FQIYFDNCPLLTIPGR Unmodified 1952.9819 0.9818541 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 9 0 1 83.192 83.192 3 5.4703E-06 24835 TMT1-8 78.249 50.606 23.26 36.277 27.421 37.343 19.705 46.342 22 36 29 36 22 44 1 1 1 1 1 1 7133 6083 153 6031 9615 12513 12513 1 FQLHDCTQVEK Unmodified 1403.6503 0.65034921 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 5 0 1 43.343 43.343 3 0.0042261 11383 TMT1-4 70.806 36.038 184.09 278.92 203.27 189.78 248.9 234.88 174 277 212 189 254 227 1 1 1 1 1 1 27015 6084 570 6032 9616 12514 12514 1 FQLLEGPPESMGR Unmodified 1459.7129 0.71294946 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 6 0 1 64.509 64.509 3 0.00037123 19911 TMT1-5 81.904 77.199 23.124 44.534 43.223 35.829 50.138 45.473 22 44 44 36 51 44 1 1 1 1 1 1 17762 6085 972 6033 9617 12515 12515 1 FQLQSDLLR Unmodified 1118.6084 0.60840804 2377 Q96C23 GALM Aldose 1-epimerase yes yes 0 0 0 0 0 7 0 1 61.671 61.671 2 0.0018035 18123 TMT1-6 112.8 39.164 139.06 127.58 145.14 76.208 137.25 104.82 131 131 145 80 138 102 1 1 1 1 1 1 16064 6086 2377 6034 9618 12516 12516 1 FQLTDCQIYEVLSVIR Unmodified 1983.0135 0.013548159 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 8 0 1 90.363 90.363 3 3.2553E-18 29220 TMT1-7 145.46 128.71 51.967 65.939 46.72 46.678 43.357 45.667 49 66 49 46 45 44 2 2 2 2 2 2 26292 6087 1892 6035 9619 12517;12518 12518 2 FQMIPLDPK Unmodified 1087.5736 0.57360243 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 7.25 0.829 1 1 2 67.164 67.164 2;3 0.00036786 20389 TMT1-7 139.74 92.542 1896.5 3025 2212.4 1887.4 2528.7 3460.6 1794 2998 2299 1891 2614 3314 4 4 4 4 4 4 854080 + 6088 32;554 6036 9620;9621;9622;9623 12519;12520;12521;12522 12522 4 FQMIPLDPK Oxidation (M) 1103.5685 0.56851706 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 1 0 0 8 0 1 58.815 58.815 3 0.018401 17100 TMT1-7 72.006 54.141 223.72 387.35 303.79 235.81 272.53 429.28 212 383 313 237 285 410 1 1 1 1 1 1 54330 + 6089 32;554 6036 9624 12523 12523 7 1 FQNALLVR Unmodified 959.55525 0.55525025 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 9 0 1 53.809 53.809 2 4.9666E-09 13270 TMT1-8 179.16 82.646 826.42 1181.8 946.35 631.23 922.44 1169.7 781 1178 970 645 948 1122 2 2 2 2 2 2 370400 + 6090 28 6037 9625 12524;12525 12524 2 FQNDRTEDEQFNDEK Unmodified 1913.8028 0.80276334 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 1 2 0 1 42.164 42.164 3 0.00012346 11820 TMT1-1 84.41 68.988 53.96 95.588 47.206 44.205 57.083 45.275 51 94 51 44 58 44 1 1 1 1 1 1 6756.4 6091 2985 6038 9626 12526 12526 1 FQNLDKK Unmodified 891.48142 0.48141661 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 1 8 0 1 41.899 41.899 3 0.011753 10377 TMT1-7 87.323 49.019 5646.7 9132.8 6411.5 5019.8 5852.9 8041.2 5341 9042 6665 5043 6080 7700 1 1 1 1 1 1 302110 6092 128 6039 9627 12527 12527 1 FQNVADLHLYLYSAK Unmodified 1780.9148 0.91482039 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 67.555 67.555 3 1.2749E-07 18694 TMT1-8 102.38 73.037 106.77 159.73 134.36 108.46 141.76 173.98 101 159 138 109 146 167 2 2 2 2 2 2 13788 6093 1084 6040 9628 12528;12529 12528 2 FQNVNSVTIFVQSNQGEEETTR Unmodified 2526.1987 0.19865941 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 0 6 0 1 64.518 64.518 3 1.6535E-12 19876 TMT1-5 92.913 75.892 0 30.378 28.585 21.79 29.346 30.077 0 29 29 22 30 29 0 1 1 1 1 1 7970.4 6094 171 6041 9629 12530 12530 1 FQPDLVTIVDDLR Unmodified 1529.809 0.80895834 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 5 0 1 82.965 82.965 3 0.031142 26943 TMT1-4 46.408 25.745 30.882 20.962 21.73 14.837 13.96 30.516 29 22 22 15 15 29 1 1 1 1 1 1 2153.6 6095 2940 6042 9630 12531 12531 1 FQPGETLTEILETPATSEQEAEHQR Unmodified 2840.3464 0.34644586 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 3.5 0.5 1 1 70.425 70.425 3;4 7.6616E-25 23339 TMT1-2 124.7 111.25 39.323 75.522 33.67 36.695 34.378 76.837 37 74 37 36 37 73 2 3 3 3 3 3 16828 6096 1139 6043 9631;9632 12532;12533;12534 12532 3 FQPGVLEAP Unmodified 956.49673 0.49673232 910 P27361;P27361-2 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 0 5 0 1 66.367 66.367 2 0.00098144 20417 TMT1-4 85.064 54.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6097 910 6044 9633 12535 12535 1 FQPLLDGLK Unmodified 1029.5859 0.58588168 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 8 0 1 68.64 68.64 3 0.00017143 20920 TMT1-7 127.4 57.974 161.15 194.97 161.71 169.62 174.13 276.46 152 196 168 167 183 264 1 1 1 1 1 1 33041 6098 228 6045 9634 12536 12536 1 FQPVHDLTIGVEFGAR Unmodified 1784.921 0.9209684 1370 P61019;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B yes no 0 0 0 0 0 7 0 1 63.934 63.934 3 0.00042736 19030 TMT1-6 72.311 50.283 68.982 87.004 54.587 58.39 93.06 75.162 65 87 58 58 94 73 1 1 1 1 1 1 23783 6099 1370 6046 9635 12537 12537 1 FQQAVDAVEEFLR Unmodified 1550.7729 0.77290718 1936 Q49A26-5;Q49A26-2;Q49A26-3;Q49A26;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 0 7 0 1 89.147 89.147 3 0.0019986 28718 TMT1-6 69.92 52.978 23.399 14 22.846 0 7.0727 7.2602 22 15 22 0 7 7 1 1 1 0 1 1 4505.2 6100 1936 6047 9636 12538 12538 1 FQRPGDPQSAQDK Unmodified 1472.7008 0.70080487 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 SF1 Splicing factor 1 yes no 0 0 0 0 1 5 0 1 34.983 34.983 3 0.00074361 8064 TMT1-4 80.287 67.927 69.021 79.558 54.295 74.96 84.713 82.863 65 80 58 73 87 80 1 1 1 1 1 1 7523.8 6101 1866 6048 9637 12539 12539 1 FQSAAIGALQEASEAYLVGLFEDTNLCAIHAK Unmodified 3436.6973 0.69730598 1525 P84243 H3F3A Histone H3.3 yes yes 0 0 0 0 0 7.67 0.471 1 2 98.66 98.66 4;5 6.5237E-21 32210 TMT1-7 103.68 97.958 124.15 131.08 123.37 246.08 123.83 322.66 117 133 132 234 138 306 6 6 6 6 5 6 50016 6102 1525 6049 9638;9639;9640 12540;12541;12542;12543;12544;12545 12545 6 FQSLGVAFYR Unmodified 1186.6135 0.61349341 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 9 0 1 64.504 64.504 3 6.1884E-05 17479 TMT1-8 115.57 81.683 76.402 86.238 70.505 41.292 79.994 52.083 72 87 72 43 80 51 1 1 1 1 1 1 15720 6103 1237 6050 9641 12546 12546 1 FQSLNADINK Unmodified 1148.5826 0.58258722 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 7 0 1 54.17 54.17 2 0.00018905 15196 TMT1-6 130.01 77.751 54.026 64.472 62.525 82.254 77.598 67.076 51 65 65 80 80 65 1 1 1 1 1 1 9719.5 6104 967 6051 9642 12547 12547 1 FQSLNADINKR Unmodified 1304.6837 0.68369824 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 1 8 0 2 46.543 46.543 2;3 7.3386E-12 12234 TMT1-7 176.65 131.83 582.98 957.83 753.76 620.23 781.21 941.37 552 949 778 622 805 904 2 2 2 2 2 2 284890 6105 967 6052 9643;9644 12548;12549 12549 2 FQSSAVMALQEACEAYLVGLFEDTNLCAIHAK Unmodified 3585.6942 0.69421122 1496 P68431 HIST1H3A Histone H3.1 yes yes 0 0 0 0 0 8 0 1 96.019 96.019 5 1.2837E-06 31308 TMT1-7 61.03 47.64 15.987 14.789 5.5601 23.479 12.516 30.557 15 15 7 22 14 29 1 1 1 1 1 1 5578.8 6106 1496 6053 9645 12550 12550 1 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK Unmodified 3512.6956 0.69559142 2067 Q71DI3 HIST2H3A Histone H3.2 yes yes 0 0 0 0 0 8 0 1 99.853 99.853 5 0.00014744 32588 TMT1-7 46.048 36.586 26.645 20.33 13.011 17.568 12.605 35.884 25 21 14 17 14 34 2 2 2 2 2 2 2509.5 6107 2067 6054 9646 12551;12552 12551 2 FQSSHHPTDITSLDQYVER Unmodified 2259.0556 0.055623984 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 6.5 0.5 1 1 49.979 49.979 4 8.9713E-06 13522 TMT1-6 77.037 63.806 137.23 203.26 208.32 159.17 174.99 234.86 130 203 211 160 182 225 2 2 2 2 2 2 28153 6108 708 6055 9647;9648 12553;12554 12554 2 FQSVPAQPGQTSPLLQYFGILLDQGQLNK Unmodified 3186.6713 0.67134923 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 97.089 97.089 4 6.7134E-14 29908 TMT1-8 78.221 61.689 60.174 74.017 103.23 53.666 73.861 61.852 57 75 102 56 75 60 2 2 2 2 2 2 29077 6109 1540 6056 9649 12555;12556 12555 2 FQTIDIEPDIEALLSQGPSCA Unmodified 2303.0991 0.099128282 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 100.55 100.55 3 3.9959E-14 33060 TMT1-4 112.27 109.85 19.985 44.977 29.418 29.743 31.927 24.673 19 44 31 29 32 24 3 3 3 2 2 3 18744 6110 528 6057 9650;9651 12557;12558;12559 12558 3 FQTLINDLDK Unmodified 1205.6292 0.62920306 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 6 0 1 71.163 71.163 3 0.00050051 22483 TMT1-5 98.898 65.952 61.487 72.453 64.158 34.013 80.329 52.074 58 73 65 36 80 51 1 1 1 1 1 1 5707.7 6111 3011 6058 9652 12560 12560 1 FQVDPSGEIVELAK Unmodified 1530.793 0.79297392 2676 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 0 5 0 1 70.843 70.843 3 0.00030871 22164 TMT1-4 78.069 52.026 85.049 93.383 53.754 66.674 62.059 83.509 80 94 58 65 65 80 1 1 1 1 1 1 9494.3 6112 2676 6059 9653 12561 12561 1 FQVIVYNPLGR Unmodified 1304.7241 0.7241065 87 O00754-2;O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 0 0 0 0 0 9 0 1 70.152 70.152 2 7.9583E-06 19680 TMT1-8 111.39 71.683 61.618 64.185 49.062 43.966 63.91 60.004 58 65 51 44 65 58 1 1 1 1 1 1 7580.8 6113 87 6060 9654 12562 12562 1 FQVLLAELK Unmodified 1059.6328 0.63283187 2609 Q9H0A8 COMMD4 COMM domain-containing protein 4 yes yes 0 0 0 0 0 9 0 1 78.683 78.683 2 0.0047511 23059 TMT1-8 85.533 45.824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6114 2609 6061 9655 12563 12563 1 FQVWDYEEGEVEALLDR Unmodified 2096.9691 0.96910039 183 O43598 DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 yes yes 0 0 0 0 0 4 0 1 87.766 87.766 3 0.00083388 29010 TMT1-3 50.178 37.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6115 183 6062 9656 12564 12564 1 FQVYVEVSK Unmodified 1097.5757 0.57571092 1690 Q13287 NMI N-myc-interactor yes yes 0 0 0 0 0 7 0 1 60.802 60.802 2 0.0035632 17793 TMT1-6 70.399 53.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6116 1690 6063 9657 12565 12565 1 FQWDLNAWTK Unmodified 1307.6299 0.62987176 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 9 0 1 75.018 75.018 2 1.371E-05 21642 TMT1-8 138.25 91.788 68.825 110.31 61.147 49.779 123.31 89.223 65 109 65 51 123 87 1 1 1 1 1 1 11557 6117 1688 6064 9658 12566 12566 1 FQYYEDSSGK Unmodified 1222.5142 0.51423288 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 4.75 0.433 1 3 49.787 49.787 2;3 1.0465E-06 13814 TMT1-4 163.66 132.87 1629.2 2366.6 2257.6 1935.3 2051.4 2613.9 1542 2363 2305 1929 2132 2507 5 5 5 5 5 5 583190 6118 484 6065 9659;9660;9661;9662 12567;12568;12569;12570;12571 12568 5 FRIDELEPR Unmodified 1173.6142 0.6142217 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 5 0 1 52.805 52.805 3 0.0018321 15144 TMT1-4 97.597 52.905 160.86 217.9 191.82 142.86 222.89 171.66 152 218 196 145 225 167 2 2 2 2 2 2 26868 6119 1792 6066 9663 12572;12573 12573 2 FRNPPGGDNLEER Unmodified 1499.7117 0.71170391 2756 Q9NV96-3;Q9NV96-2;Q9NV96 TMEM30A Cell cycle control protein 50A yes no 0 0 0 0 1 4 0 1 35.788 35.788 3 0.019454 8655 TMT1-3 54.501 31.583 92.317 108.38 81.861 119.08 150.48 88.448 87 109 87 116 152 87 1 1 1 1 1 1 5481.6 6120 2756 6067 9664 12574 12574 1 FRPDMEEEEAK Unmodified 1379.6027 0.60273031 2462 Q99436 PSMB7 Proteasome subunit beta type-7 yes yes 0 0 0 0 1 3 0 1 42.778 42.778 3 0.042682 12435 TMT1-2 51.829 22.14 46.204 80.309 101.41 87.607 76.546 90.558 44 80 102 87 80 87 1 1 1 1 1 1 6009.7 6121 2462 6068 9665 12575 12575 1 FRPLQLETINVTMAGK Unmodified 1816.9869 0.98693948 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 1 9 0 1 64.767 64.767 3 0.00033451 17633 TMT1-8 62.861 46.679 30.771 35.765 27.781 29.102 49.935 60.403 29 36 29 29 51 58 1 1 1 1 1 1 6593.8 6122 1125 6069 9666 12576 12576 1 FSAEDEALSNIAR Unmodified 1421.6787 0.67867245 3041 Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 0 3.5 0.5 1 1 58.009 58.009 2;3 1.8066E-10 18422 TMT1-2 138.94 93.914 123.92 183.33 117.65 109.9 118.14 189.57 117 182 124 109 124 181 2 2 2 2 2 2 29718 6123 3041 6070 9667;9668 12577;12578 12577 2 FSAEFDFR Unmodified 1017.4556 0.45559579 529 P07225;CON__P07224 PROS1 Vitamin K-dependent protein S yes no 0 0 0 0 0 6 0 1 61.236 61.236 2 0.030822 18613 TMT1-5 81.191 60.861 107.65 191.5 140.03 108.43 125.8 181.89 102 189 145 109 131 174 1 1 1 1 1 1 28912 6124 529 6071 9669 12579 12579 1 FSAFLEK Unmodified 840.43815 0.43815481 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 8 0 1 63.218 63.218 2 0.010017 18769 TMT1-7 109.86 29.683 410.01 554.96 409.72 404.39 446.03 481.9 387 554 428 400 460 464 1 1 1 1 1 1 64168 6125 648 6072 9670 12580 12580 1 FSAPLPLELYTSSNFIGLFVK Unmodified 2342.2562 0.25622127 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 9 0 1 100.91 100.91 3 1.0901E-15 31457 TMT1-8 104.84 71.531 38.165 51.115 34.444 52.313 73.221 21.363 36 51 37 51 73 22 2 2 2 2 2 2 6595.1 6126 2263 6073 9671 12581;12582 12582 2 FSAPVVPSSFNFGGPAPGMN Unmodified 1978.9247 0.92473315 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 9 0 1 83.824 83.824 3 1.3853E-07 25019 TMT1-8 72.21 59.056 23.281 21.226 36.617 21.193 35.656 29.897 22 22 36 22 36 29 1 1 1 1 1 1 9336.6 6127 352 6074 9672 12583 12583 1 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP Unmodified 2949.443 0.44298878 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 6 0 1 92.19 92.19 4 0.046779 30402 TMT1-5 21.467 14.514 7.3811 18.552 6.1078 7.0916 10.385 23.156 7 18 7 7 11 22 1 1 1 1 1 1 5133.9 6128 1688 6075 9673 12584 12584 1 FSCPETDSHR Unmodified 1234.5037 0.50368497 1219 P50416 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes yes 0 0 0 0 0 4 0 1 30.013 30.013 3 0.00044659 6374 TMT1-3 99.788 83.898 38.111 74.707 23.654 68.454 62.784 60.036 36 73 29 65 65 58 1 1 1 1 1 1 5715.2 6129 1219 6076 9674 12585 12585 1 FSDDAFNTTFISTIGIDFK Unmodified 2138.0208 0.020801607 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 7 0 1 90.568 90.568 3 0.00046643 29396 TMT1-6 52.19 20.554 46.813 28.313 42.999 60.037 42.209 30.776 44 29 44 58 44 30 2 1 2 2 2 2 3944.6 6130 1372 6077 9675 12586;12587 12586 2 FSDDHYR Unmodified 938.38824 0.38824451 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 3 0 1 30.305 30.305 3 0.00026739 7515 TMT1-2 147.69 74.056 160.84 210.29 201.61 127.82 178.03 158.02 152 211 204 131 181 153 2 2 2 2 2 2 23883 6131 1702 6078 9676 12588;12589 12589 2 FSDDKDGVLPVK Unmodified 1318.6769 0.67688153 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 1 6 0 1 53.655 53.655 3 0.010936 15604 TMT1-5 63.76 42.203 76.844 154.56 118.56 109.1 157.71 135.15 73 152 123 109 160 131 1 1 1 1 1 1 11472 6132 2631 6079 9677 12590 12590 1 FSDFLGLHSK Unmodified 1149.5819 0.58185893 235 O60749-2;O60749 SNX2 Sorting nexin-2 yes no 0 0 0 0 0 9 0 1 60.805 60.805 3 0.00083928 16027 TMT1-8 90.306 48.766 107.83 183.36 117.01 101.69 150.22 119.37 102 181 123 102 152 116 1 1 1 1 1 1 11698 6133 235 6080 9678 12591 12591 1 FSDHVALLSVFQAWDDAR Unmodified 2076.0065 0.0064889465 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 8 0 1 80.892 80.892 3 9.546E-08 25680 TMT1-7 93.753 73.662 92.762 69.685 39.971 67.078 84.269 106.33 87 72 44 65 87 102 2 2 2 2 2 2 23332 6134 1619 6081 9679 12592;12593 12592 2 FSDIYALCVAYPEPLGER Unmodified 2099.0034 0.0033774035 1729 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 0 6 0 1 77.936 77.936 3 4.43E-06 25148 TMT1-5 67.995 50.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6135 1729 6082 9680 12594 12594 1 FSDLIQLVDFYQLNK Unmodified 1841.9564 0.95635086 1693 Q13322-3;Q13322-2;Q13322-4;Q13322 GRB10 Growth factor receptor-bound protein 10 yes no 0 0 0 0 0 9 0 1 95.086 95.086 3 1.4764E-05 29263 TMT1-8 81.311 51.983 15.932 14.635 14.989 6.3451 21.937 22.826 15 15 15 7 22 22 1 1 1 1 1 1 2724.1 6136 1693 6083 9681 12595 12595 1 FSDQFPLPLK Unmodified 1190.6336 0.63356015 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 8 0 2 71.618 71.618 2;3 0.0034425 22084 TMT1-7 96.143 57.367 153.76 210.94 127.52 187.77 130.8 143.38 145 210 138 181 138 138 2 2 2 2 2 2 26475 6137 2336 6084 9682;9683 12596;12597 12597 2 FSDSEIGGITIAWK Unmodified 1522.7668 0.76675917 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 7 0 1 75.36 75.36 3 0.00014655 23575 TMT1-6 82.202 58.215 61.251 95.542 84.19 87.619 130.49 73.028 58 95 87 87 131 72 2 2 2 2 2 2 12795 6138 1093;1253 6085 9684 12598;12599 12599 2 FSDSYASVIK Unmodified 1115.5499 0.5498901 763 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 0 6 0 1 57.342 57.342 2 0.0010801 17063 TMT1-5 103.7 50.53 37.885 50.335 82.203 25.718 57.42 60.19 36 51 80 29 58 58 1 1 1 1 1 1 3591.7 6139 763 6086 9685 12600 12600 1 FSEDAFNSTFISTIGIDFK Unmodified 2138.0208 0.020801607 1366 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 0 7.5 0.5 1 1 89.527 89.527 3 1.781E-08 28888 TMT1-7 76.176 29.715 23.301 59.313 49.518 44.619 27.747 46.112 22 58 51 44 30 44 1 2 2 2 2 2 3240 6140 1366 6087 9686;9687 12601;12602;12603 12603 3 FSEGTSADR Unmodified 968.41994 0.41993856 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 3 0 1 31.681 31.681 2 0.00061833 8002 TMT1-2 132.76 66.329 30.402 74.67 56.922 26.945 72.278 52.304 29 73 58 29 72 51 1 1 1 1 1 1 6446 6141 1437 6088 9688 12604 12604 1 FSEGTSADREIQR Unmodified 1494.7063 0.70628418 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 1 3 0 1 34.794 34.794 3 0.047236 9247 TMT1-2 48.229 22.11 99.15 194.48 122.97 148.22 156.2 126.66 94 191 131 145 160 123 1 1 1 1 1 1 9830.1 6142 1437 6089 9689 12605 12605 1 FSELTAEK Unmodified 923.46001 0.46001246 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 5 0 1 51.429 51.429 3 0.00071151 14546 TMT1-4 130.27 87.148 307.01 343.64 227.56 174.79 271.44 360.02 289 346 238 177 279 345 1 1 1 1 1 1 28361 6143 1161 6090 9690 12606 12606 1 FSEPHAR Unmodified 842.4035 0.40350064 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22694-8 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 0 5.67 1.7 1 1 1 26.809 26.809 3 0.0021 5167 TMT1-3 106.42 65.843 146.76 258.37 182.54 152.62 139.97 197.48 139 255 190 152 147 189 5 5 5 5 5 5 10428 6144 760;850 6091 9691;9692;9693 12607;12608;12609;12610;12611 12608 5 FSFEQPDGR Unmodified 1081.4829 0.48287317 938 P29466-2;P29466;P29466-3;P29466-4;P29466-5 CASP1 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10 yes no 0 0 0 0 0 5 0 1 50.375 50.375 2 0.015698 14140 TMT1-4 81.099 41.775 146.22 214.6 129.81 132.24 170.24 165.7 138 213 138 131 174 160 1 1 1 1 1 1 17268 6145 938 6092 9694 12612 12612 1 FSFGLLDLPFR Unmodified 1310.7023 0.70230842 16 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 88.514 88.514 2 0.00018871 26872 TMT1-8 103.31 77.738 54.298 33.93 42.648 59.506 71.571 59.786 51 36 44 58 73 58 1 1 1 1 1 1 6516.2 6146 16 6093 9695 12613 12613 1 FSFQCPGR Unmodified 997.44399 0.44398525 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 8.5 0.5 1 1 48.574 48.574 2 0.0012938 11165 TMT1-8 147.34 120.74 659.28 750.94 728.88 525.84 764.4 917.33 622 759 740 534 784 881 3 3 3 3 3 3 166630 6147 1700 6094 9696;9697 12614;12615;12616 12615 3 FSFSGNTLVSSSADPEGHFETPIWIER Unmodified 3009.4145 0.41446584 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 6.67 0.943 2 1 74.898 74.898 3;4 2.2712E-12 23961 TMT1-5 76.899 62.439 61.655 56.733 49.162 51.756 56.207 91.138 58 58 51 51 59 87 2 2 2 2 2 2 21292 6148 1792 6095 9698;9699;9700 12617;12618;12619 12618 3 FSFTLPYPVK Unmodified 1197.6434 0.64339656 2808 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 0 0 9 0 1 74.505 74.505 3 0.003225 21443 TMT1-8 70.056 49.155 30.654 51.628 34.06 36.804 27.352 37.595 29 51 36 36 29 36 1 1 1 1 1 1 3971.6 6149 2808 6096 9701 12620 12620 1 FSGFEASHGPIK Unmodified 1275.6248 0.62478638 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 7 0 1 48.11 48.11 3 1.524E-07 12767 TMT1-6 117.23 84.286 211 225.53 233.38 189.84 208.49 254.15 199 229 237 190 216 244 1 1 1 1 1 1 23853 6150 1658 6097 9702 12621 12621 1 FSGFLVAPDSDVYR Unmodified 1571.762 0.76200815 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 7 0 1 70.272 70.272 3 0.00033678 21522 TMT1-6 59.709 43.818 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6151 2121 6098 9703 12622 12622 1 FSGFTQK Unmodified 813.4021 0.40210366 91 O14548 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 49.238 49.238 2 0.017615 11454 TMT1-8 96.253 41.704 107.74 160.46 150.25 90.805 158.55 135.12 102 160 152 94 160 131 1 1 1 1 1 1 9974.4 6152 91 6099 9704 12623 12623 1 FSGSGSGTDFTLTISR Unmodified 1631.7791 0.77911477 416 P01619;A0A0C4DH25 IGKV3D-20 Ig kappa chain V-III region B6 yes no 0 0 0 0 0 7 0 1 61.472 61.472 2 9.2961E-09 18082 TMT1-6 115.69 78.135 15.779 29.32 28.219 29.643 19.803 53.801 15 29 29 29 22 51 1 1 1 1 1 1 8468.2 6153 416 6100 9705 12624 12624 1 FSGWYDADLSPAGHEEAK Unmodified 1978.8697 0.86972069 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 0 6 0 1 58.856 58.856 3 1.076E-10 17664 TMT1-5 113.88 97.003 68.789 78.914 93.788 63.709 92.816 75.169 65 80 94 65 94 73 1 1 1 1 1 1 10950 6154 782 6101 9706 12625 12625 1 FSGWYDADLSPAGHEEAKR Unmodified 2134.9708 0.97083172 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 1 5.5 0.5 1 1 52.735 52.735 4 3.9276E-07 15140 TMT1-5 88.283 71.977 252.38 396.39 347.52 258.97 297.02 446.71 239 394 355 261 310 427 2 2 2 2 2 2 33433 6155 782 6102 9707;9708 12626;12627 12627 2 FSHEEIAMATVTALR Unmodified 1674.8399 0.83994089 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 7.5 1.12 1 1 1 1 58.415 58.415 2;3 3.6009E-11 16817 TMT1-6 127.07 84.353 468.52 625.06 435.66 449.78 449.64 712.05 442 624 458 443 473 680 4 4 4 4 4 4 156710 6156 459 6103 9709;9710;9711;9712 12628;12629;12630;12631;12632 12629 5 FSHEEIAMATVTALR Oxidation (M) 1690.8349 0.83485551 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 1 0 0 6 0 1 51.975 51.975 3 0.0018448 14929 TMT1-5 51.265 42.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6157 459 6103 9713 12633 12633 59 1 FSHEEIAMATVTALRR Unmodified 1830.9411 0.94105192 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 8 0 2 52.828 52.828 3;4 5.3876E-12 14708 TMT1-7 125.73 107.31 123.13 151.81 96.401 95.042 103.89 167.6 116 152 102 94 109 160 1 1 1 1 1 1 29818 6158 459 6104 9714;9715 12634;12635 12634 2 FSHQGVQLIDFSPCER Unmodified 1918.8996 0.89958103 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 7 0 1 57.326 57.326 3 0.0207 16438 TMT1-6 45.342 33.427 161.49 164.61 130.99 171.44 174.7 196.49 152 167 138 167 181 189 1 1 1 1 1 1 9419.9 6159 1328 6105 9716 12636 12636 1 FSIDIETFYK Unmodified 1261.6231 0.62305505 2580 Q9BZ72-2;Q9BZ72 PITPNM2 Membrane-associated phosphatidylinositol transfer protein 2 yes no 0 0 0 0 0 7 0 1 76.012 76.012 3 0.00059025 23779 TMT1-6 67.726 32.502 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6160 2580 6106 9717 12637 12637 1 FSKVEDMAELTCLNEASVLHNLK Unmodified 2647.2986 0.29857315 1019;1020 P35579;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 7 0 1 72.858 72.858 4 3.4145E-06 22601 TMT1-6 69.548 50.504 146.41 204.33 106.89 126.19 100.08 236.99 138 203 116 123 109 225 2 2 2 2 2 2 14346 6161 1019;1020 6107 9718 12638;12639 12639 2 FSLDVCEAMEYLEGNNFVHR Unmodified 2429.078 0.078015685 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 6 0 1 84.664 84.664 3 1.8055E-07 27736 TMT1-5 89.459 84.806 15.847 14.399 29.452 22.044 13.116 45.464 15 15 29 22 15 43 1 1 1 1 1 1 9071.6 6162 1083 6108 9719 12640 12640 1 FSLENNFLLQHNIR Unmodified 1743.9057 0.90565269 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 8.5 0.5 1 1 62.699 62.699 3 3.9956E-20 16793 TMT1-8 163.33 134.35 123.58 166.19 189.24 104.67 111.59 143.92 117 167 189 108 116 138 2 2 2 2 2 2 20423 6163 1091 6109 9720;9721 12641;12642 12642 2 FSLFAER Unmodified 868.4443 0.44430282 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 8 0 1 59.969 59.969 2 0.0022353 17568 TMT1-7 143 63.551 159.73 273.06 333.87 256.2 313.54 304.46 152 272 335 258 321 294 1 1 1 1 1 1 68585 6164 856 6110 9722 12643 12643 1 FSLFTAVHK Unmodified 1048.5706 0.57056597 2832 Q9P2T1-2;Q9P2T1 GMPR2 GMP reductase 2 yes no 0 0 0 0 0 9 0 1 59.341 59.341 3 0.0022624 15428 TMT1-8 85.731 48.539 77.402 102.15 69.16 74.221 76.905 98.009 73 102 73 73 80 94 1 1 1 1 1 1 9963.5 6165 2832 6111 9723 12644 12644 1 FSLSGGYWNSVSDTAK Unmodified 1717.7948 0.79476484 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 8 0 1 66.758 66.758 3 0.00019949 20178 TMT1-7 76.341 29.681 53.77 87.503 86.09 56.644 86.105 66.833 51 87 87 58 87 65 1 1 1 1 1 1 14418 6166 1256 6112 9724 12645 12645 1 FSLVGIGGQDLNEGNR Unmodified 1674.8325 0.83254733 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 4.67 2.62 2 2 2 65.189 65.189 2;3 2.1275E-28 20040 TMT1-5 152.17 134.37 396.57 535.91 521.23 381.55 377.33 563.81 375 537 529 384 396 539 6 6 6 6 6 6 273560 6167 690 6113 9725;9726;9727;9728;9729;9730 12646;12647;12648;12649;12650;12651;12652;12653 12649 8 FSMLHAK Oxidation (M) 848.42146 0.42145889 3074 yes yes 0 0 1 0 0 4.5 0.5 1 1 25.938 25.938 3 0.028993 4598 TMT1-4 79.454 26.817 4697.6 4967.4 4437.2 4148.1 6561.3 3810.3 4426 5036 4569 4150 6580 3750 3 3 3 3 3 3 494120 + 6168 3074 6114 9731;9732 12654;12655;12656 12656 350 3 FSMPGFK Unmodified 812.3891 0.38909613 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 9 0 1 61.542 61.542 2 0.015392 16346 TMT1-8 97.473 51.755 913.67 1901.7 1001.9 931.52 1343.2 1612.9 866 1861 1074 930 1378 1549 1 1 1 1 1 1 158770 6169 1632 6115 9733 12657 12657 1 FSMPSLK Unmodified 808.41531 0.41531088 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 9 0 1 60.221 60.221 2 0.030758 15797 TMT1-8 89.046 26.068 168.68 332.84 222.21 155.05 350.26 284.22 160 327 231 160 351 276 1 1 1 1 1 1 18317 6170 1632 6116 9734 12658 12658 1 FSMVLPEVEAALAEIPGVR Unmodified 2027.0761 0.076148416 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 99.301 99.301 3 1.5283E-13 32332 TMT1-6 112.82 95.879 22.231 52.662 6.1684 31.59 21.128 30.311 21 51 7 29 22 29 3 3 1 2 2 3 7508.1 6171 2382 6117 9735;9736 12659;12660;12661 12659 3 FSMVVQDGIVK Unmodified 1221.6427 0.64274463 947 P30044-2;P30044;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 64.555 64.555 3 4.1093E-07 19263 TMT1-7 134.13 128.81 348.3 382.4 288.52 255.49 262.3 396.53 328 386 300 254 275 379 2 2 2 2 2 2 64144 6172 947 6118 9737;9738 12662;12663 12663 2 FSNISAAK Unmodified 836.43922 0.43921744 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 8 0 1 45.492 45.492 2 0.0043307 11791 TMT1-7 125.82 77.03 301.95 563.22 351.54 302.75 397.46 479.02 286 554 370 303 409 460 1 1 1 1 1 1 72890 6173 1233 6119 9739 12664 12664 1 FSNQETSVEIGESVR Unmodified 1680.7955 0.79549312 661 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 0 0 0 0 0 3 0 1 50.906 50.906 2 0.025184 15667 TMT1-2 57.279 29.047 23.324 21.345 29.332 14.542 5.5978 30.754 22 22 29 15 7 29 1 1 1 1 1 1 4143.8 6174 661 6120 9740 12665 12665 1 FSNTGEDWYVLVGVAK Unmodified 1783.8781 0.87810054 1850 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 7.5 0.5 1 1 78.846 78.846 3 0.0062982 24840 TMT1-6 52.93 33.607 91.596 160.34 159.01 90.415 151.55 95.88 87 159 160 94 152 94 2 2 2 2 2 2 18522 6175 1850 6121 9741;9742 12666;12667 12666 2 FSPAGPILSIR Unmodified 1156.6604 0.66044361 662;2634 P11940-2;P11940;Q4VXU2;Q4VXU2-2;Q5JQF8;Q9H361 PABPC1;PABPC1L;PABPC1L2A;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 1-like 2;Polyadenylate-binding protein 3 no no 0 0 0 0 0 9 0 1 63.189 63.189 3 1.0273E-06 16985 TMT1-8 113.69 93.166 23.122 35.893 50.934 44.411 34.332 37.396 22 36 51 44 36 36 1 1 1 1 1 1 6282.3 6176 662;2634 6122 9743 12668 12668 1 FSPATHPSEGLEENYCR Unmodified 1992.8636 0.86358946 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 4 0 1 42.969 42.969 3 3.3263E-14 11498 TMT1-3 97.579 86.317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6177 401 6123 9744 12669 12669 1 FSPDGELYASGSEDGTLR Unmodified 1899.8487 0.8486509 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 4 0 1 58.012 58.012 3 5.5532E-07 17463 TMT1-3 91.14 73.002 38.177 58.702 26.04 36.44 72.082 75.761 36 58 29 36 73 73 1 1 1 1 1 1 10471 6178 3000 6124 9745 12670 12670 1 FSPDGNR Unmodified 791.35622 0.3562161 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 4 0 1 32.106 32.106 2 0.013371 7169 TMT1-3 102.77 74.519 323.71 488.11 364.89 344.59 397.25 428.92 306 485 380 342 409 413 1 1 1 1 1 1 48558 6179 250 6125 9746 12671 12671 1 FSPEFVDFTAQCLR Unmodified 1715.7977 0.79774172 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 7 0 1 73.917 73.917 3 0.0027461 22901 TMT1-6 64.394 42.635 30.444 66.153 57.074 35.007 49.92 52.942 29 65 58 36 51 51 1 1 1 1 1 1 13345 6180 1130 6126 9747 12672 12672 1 FSPGAPGGSGSQPNQK Unmodified 1514.7114 0.71136956 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 7 0 1 40.512 40.512 3 1.8144E-07 9826 TMT1-6 103.17 93.591 307.95 344.28 249.04 250.35 254.23 455.39 290 347 261 247 269 434 2 2 2 2 2 2 117490 6181 1881 6127 9748 12673;12674 12674 2 FSPLTTNLINLLAENGR Unmodified 1872.0105 0.010511692 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 9 0 1 86.531 86.531 3 2.6099E-14 26216 TMT1-8 116.96 91.414 7.1786 22.306 36.969 13.668 27.866 53.571 7 22 36 15 29 51 1 1 1 1 1 1 25745 6182 1148 6128 9749 12675 12675 1 FSPNSSNPIIVSCGWDK Unmodified 1906.8883 0.88834765 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 8 0 2 66.188 66.188 2;3 1.1143E-13 19950 TMT1-7 118.05 102.85 92.108 131.54 97.425 102.87 149.62 135.38 87 131 102 102 152 131 1 1 1 1 1 1 34511 6183 1478 6129 9750;9751 12676;12677 12676 2 FSPNTSQFLLVSSWDTSVR Unmodified 2170.0695 0.069483134 194 O43684-2;O43684 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 0 9 0 1 78.408 78.408 3 6.8056E-05 22907 TMT1-8 59.469 38.218 23.185 52.258 26.466 37.257 27.331 37.596 22 51 29 36 29 36 1 1 1 1 1 1 10807 6184 194 6130 9752 12678 12678 1 FSPSPLSIK Unmodified 974.54368 0.54368251 1830 Q15120;Q15120-2 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes no 0 0 0 0 0 9 0 1 58.832 58.832 2 0.027953 15263 TMT1-8 69.915 26.181 84.539 131.9 106.79 62.948 92.081 97.576 80 131 109 65 94 94 1 1 1 1 1 1 6096.9 6185 1830 6131 9753 12679 12679 1 FSPVTPK Unmodified 774.42759 0.42759012 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 8 0 1 46.6 46.6 2 0.0028444 12254 TMT1-7 140.98 75.721 2052.7 2490.2 1494.3 2072.2 1661.5 3275.3 1933 2494 1614 2006 1787 3117 1 1 1 1 1 1 189670 6186 1881 6132 9754 12680 12680 1 FSQFLETEYK Unmodified 1290.6132 0.61321864 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 7 0 1 65.775 65.775 3 8.592E-05 19731 TMT1-6 117.25 67.143 145.59 215.01 235.2 146.4 303.88 184.27 138 215 236 152 303 181 1 1 1 1 1 1 20714 6187 515 6133 9755 12681 12681 1 FSSETWQNLGTLHR Unmodified 1674.8114 0.81141795 2421 Q96IU4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes yes 0 0 0 0 0 8 0 1 55.505 55.505 3 3.2327E-37 15782 TMT1-7 179.5 165.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6188 2421 6134 9756 12682 12682 1 FSSGYYDFLVEVEGDNR Unmodified 1995.885 0.88503641 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 5 0 1 78.697 78.697 3 0.0087679 25210 TMT1-4 50.178 45.287 92.202 131.8 81.476 96.188 90.26 106.16 87 131 87 94 94 102 2 2 2 2 2 2 10203 6189 479 6135 9757 12683;12684 12683 2 FSSQQAATK Unmodified 966.47706 0.47705951 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 0 7 0 1 36.587 36.587 2 0.0032428 8218 TMT1-6 102.06 66.443 54.107 73.332 41.347 35.665 64.804 45.055 51 73 44 36 65 44 1 1 1 1 1 1 6359.9 6190 279 6136 9758 12685 12685 1 FSSSLPYPNNLNSVLAER Unmodified 2007.0062 0.0061545955 112 O14920-4;O14920-2;O14920 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta yes no 0 0 0 0 0 7 0 1 69.561 69.561 3 0.0057216 21242 TMT1-6 37.999 13.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6191 112 6137 9759 12686 12686 1 FSTETTFLVDKYEIL Unmodified 1804.9135 0.91348299 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 1 6 0 1 82.404 82.404 3 7.2354E-06 26869 TMT1-5 100.31 81.475 68.935 86.875 62.519 50.53 79.057 67.034 65 87 65 51 80 65 1 1 1 1 1 1 18435 6192 1154 6138 9760 12687 12687 1 FSTPEQAAK Unmodified 977.48181 0.48181054 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 5.5 0.5 1 1 41.741 41.741 2 6.4606E-05 10830 TMT1-5 152.34 101.73 197.85 590.79 331.58 336.71 456.62 477.33 189 573 354 334 467 460 3 3 3 3 3 3 43841 6193 713 6139 9761;9762 12688;12689;12690 12689 3 FSTVAGESGSADTVR Unmodified 1482.6951 0.69505079 457 P04040 CAT Catalase yes yes 0 0 0 0 0 4 0 2 43.546 43.546 2;3 1.2179E-16 11732 TMT1-3 147.42 109.86 107.59 183.79 155.76 129.89 155.18 181.06 102 182 160 130 160 174 2 2 2 2 2 2 34130 6194 457 6140 9763;9764 12691;12692 12692 2 FSTVAGESGSADTVRDPR Unmodified 1850.8759 0.8758687 457 P04040 CAT Catalase yes yes 0 0 0 0 1 4.5 0.5 1 1 40.562 40.562 3 3.6263E-14 10532 TMT1-3 124.25 106.55 315.67 541.13 408.34 318.85 349.58 511.3 299 535 422 320 365 489 3 3 3 3 3 3 92678 6195 457 6141 9765;9766 12693;12694;12695 12693 3 FSVLLLHGIR Unmodified 1153.6972 0.69716346 2421 Q96IU4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes yes 0 0 0 0 0 9 0 1 62.594 62.594 3 0.00034205 16805 TMT1-8 100.48 82.152 61.269 110.7 68.369 58.007 69.787 83.289 58 109 72 58 72 80 2 2 2 2 2 2 29987 6196 2421 6142 9767 12696;12697 12697 2 FSVPAGIVIPSFQALTAR Unmodified 1873.0462 0.046168917 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 9 0 1 85.173 85.173 3 3.5191E-05 25593 TMT1-8 68.123 28.463 61.341 95.793 68.862 67.02 53.908 107.19 58 95 72 66 58 102 2 2 2 2 2 2 7487.4 6197 463 6143 9768 12698;12699 12698 2 FSVSGLK Unmodified 736.41194 0.41194006 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 9 0 1 53.481 53.481 2 0.025553 13108 TMT1-8 91.9 29.242 130.66 159.98 86.841 103.49 150.14 119.37 123 160 94 102 152 116 1 1 1 1 1 1 26018 6198 1632 6144 9769 12700 12700 1 FSYEQLETDLQASR Unmodified 1685.7897 0.78967946 1798 Q14789-4;Q14789-3;Q14789;Q14789-2 GOLGB1 Golgin subfamily B member 1 yes no 0 0 0 0 0 4 0 1 67.111 67.111 3 0.00057817 20999 TMT1-3 56.65 37.626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6199 1798 6145 9770 12701 12701 1 FSYLAVIEGAK Unmodified 1196.6441 0.64412484 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 8 0 2 73.203 73.203 2;3 2.5281E-06 22708 TMT1-7 130.98 63.95 191.21 331.3 223.59 172.31 241.66 225.49 181 327 233 174 246 218 2 2 2 2 2 2 40969 6200 771 6146 9771;9772 12702;12703 12702 2 FSYLPIQK Unmodified 994.54877 0.54876789 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 2 62.588 62.588 2;3 0.0015993 16701 TMT1-8 89.296 44.214 274.63 485.98 499.46 368.25 398.18 522.7 261 482 505 371 414 501 3 3 3 3 3 3 78113 6201 856 6147 9773;9774 12704;12705;12706 12704 3 FTANVGIQIVGDDLTVTNPK Unmodified 2101.1055 0.10553429 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 7 0 1 74.752 74.752 3 5.2114E-10 23251 TMT1-6 97.457 92.455 23.218 44.795 27.263 29.424 34.471 53.382 22 44 29 29 36 51 1 1 1 1 1 1 10706 6202 581 6148 9775 12707 12707 1 FTAQDQQAVR Unmodified 1162.5731 0.57308516 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 5 0 1 36.395 36.395 2 0.00041971 8587 TMT1-4 118.4 73.442 61.44 103.62 45.671 66.978 71.484 52.326 58 102 51 65 73 51 1 1 1 1 1 1 10737 6203 2279 6149 9776 12708 12708 1 FTASAGIQVVGDDLTVTNPK Unmodified 2032.0477 0.047685059 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 6.4 0.49 3 2 68.942 68.942 2;3;4 8.6872E-36 21569 TMT1-5 165.86 134.23 1597.4 2198.9 1788.4 1525.3 1743.9 2279.4 1509 2196 1845 1523 1809 2185 14 14 14 14 14 14 506970 6204 514 6150 9777;9778;9779;9780;9781 12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722 12717 14 FTATASLGVIHK Unmodified 1243.6925 0.69247202 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 9 0 1 53.547 53.547 3 1.5478E-09 13181 TMT1-8 138.45 108.91 114.96 245.47 127.78 139.91 175.9 203.92 109 240 138 138 181 196 1 1 1 1 1 1 19164 6205 2465 6151 9782 12723 12723 1 FTAVAQTDLKEPLK Unmodified 1559.8559 0.85590853 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 1 7 0 2 57.197 57.197 3;4 2.9438E-05 16362 TMT1-6 95.57 58.019 277.06 393.61 350.49 314.57 295.46 478.73 262 393 360 312 312 457 2 2 2 2 2 2 25716 6206 525 6152 9783;9784 12724;12725 12724 2 FTAVEDQYYCVDCYK Unmodified 1959.8019 0.8019004 1735 Q13642-1;Q13642-5;Q13642-4;Q13642 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 5 0 2 64.288 64.288 2;3 6.3763E-10 19579 TMT1-4 121.02 100.36 192.45 245.34 268.85 146.25 263.21 302.7 182 247 269 153 268 291 3 3 3 3 3 3 154130 6207 1735 6153 9785;9786 12726;12727;12728 12727 3 FTCEQALQHPWIAGDTALDK Unmodified 2300.0896 0.089566649 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 0 6 0 1 62.811 62.811 3 7.7037E-11 19201 TMT1-5 82.36 64.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6208 1746 6154 9787 12729 12729 1 FTDDDKTDHLSWEWNLTIK Unmodified 2363.107 0.10699085 1268 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 0 0 1 7 0 1 69.389 69.389 4 3.6242E-39 21169 TMT1-6 169.98 145.97 323.76 598.54 442.2 403.5 565 491.29 307 590 460 403 574 476 1 1 1 1 1 1 64059 6209 1268 6155 9788 12730 12730 1 FTDDYQLFEELGK Unmodified 1603.7406 0.740604 1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 0 0 0 5 0 1 78.171 78.171 3 5.946E-05 25047 TMT1-4 97.551 77.17 61.413 79.804 70.275 81.108 113.99 105.48 58 80 73 80 116 102 1 1 1 1 1 1 10344 6210 1718 6156 9789 12731 12731 1 FTDEEVDELYR Unmodified 1414.6252 0.62523989 115 P19105;O14950 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 0 0 0 0 0 2.4 0.49 3 2 60.121 60.121 2;3 5.0108E-100 18987 TMT1-1 274.95 243.58 2000.1 3334.3 2580.1 2093.8 2827.2 2958.5 1894 3301 2665 2105 2892 2851 9 9 9 9 9 9 1355600 6211 115 6157 9790;9791;9792;9793;9794 12732;12733;12734;12735;12736;12737;12738;12739;12740;12741 12735 10 FTDEEVDEMYR Unmodified 1432.5817 0.58166052 879 P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 0 2.5 0.5 1 1 56.303 56.303 2 1.2482E-68 17485 TMT1-1 255.07 192.87 260.79 318.51 262.02 193.38 278.09 293.74 246 320 269 196 284 283 3 3 3 3 3 3 94519 6212 879 6158 9795;9796 12742;12743;12744 12743 3 FTDEEVDEMYR Oxidation (M) 1448.5766 0.57657514 879 P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 1 0 0 2 0 1 48.216 48.216 2 0.00040782 14212 TMT1-1 86.882 55.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6213 879 6158 9797 12745 12745 165 1 FTDEYQLFEELGK Unmodified 1617.7563 0.75625407 1719 Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 0 0 0 0 0 5 0 1 78.866 78.866 3 7.6589E-05 25312 TMT1-4 95.264 54.038 46.449 88.547 53.165 90.776 60.951 83.541 44 87 58 87 65 80 1 1 1 1 1 1 15464 6214 1719 6159 9798 12746 12746 1 FTDFDEVRQEIEAETDR Unmodified 2098.9443 0.9443422 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 1 3 0 1 70.525 70.525 3 4.1169E-07 23289 TMT1-2 94.203 77.519 23.309 45.049 11.705 38.275 19.955 37.807 22 44 15 36 22 36 1 1 1 1 1 1 9767.2 6215 1226 6160 9799 12747 12747 1 FTDLEKEK Unmodified 1008.5128 0.51277632 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 6 0 1 46.682 46.682 3 0.019573 12819 TMT1-5 72.79 44.616 291.71 285.62 323.07 223.77 328.69 424.48 275 292 325 228 338 407 1 1 1 1 1 1 22476 6216 251 6161 9800 12748 12748 1 FTDLFEK Unmodified 898.44363 0.44363412 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 7 0 2 67.406 67.406 2;3 0.021743 20356 TMT1-6 96.253 40.242 261.59 368.4 266.33 223.57 344.5 299.31 247 367 277 225 349 290 2 2 2 2 2 2 69528 6217 2267 6162 9801;9802 12749;12750 12749 2 FTDVAEIPAWVYLLK Unmodified 1763.9498 0.94980892 2074 Q7L1W4 LRRC8D Volume-regulated anion channel subunit LRRC8D yes yes 0 0 0 0 0 9 0 1 95.642 95.642 3 0.022491 29449 TMT1-8 42.345 22.605 30.804 28.301 28.566 21.52 43.76 37.127 29 29 29 22 44 36 1 1 1 1 1 1 4372 6218 2074 6163 9803 12751 12751 1 FTEDFGQEG Unmodified 1028.4087 0.40870518 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 0 2 0 1 59.983 59.983 2 0.020718 18827 TMT1-1 77.741 77.741 38.119 50.985 42.362 44.779 41.885 60.633 36 51 44 44 44 58 1 1 1 1 1 1 12385 6219 267 6164 9804 12752 12752 1 FTELVCSLSDVYQMEK Unmodified 1947.8958 0.89580079 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 7 0 1 85.157 85.157 3 6.7085E-07 27318 TMT1-6 99.566 82.077 38.261 20.083 44.593 36.313 20.046 37.804 36 22 44 36 22 36 1 1 1 1 1 1 3653.8 6220 1770 6165 9805 12753 12753 1 FTEYETQVK Unmodified 1143.5448 0.54480473 1674 Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 0 5 0 1 50.129 50.129 3 0.0016554 14055 TMT1-4 62.558 38.571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6221 1674 6166 9806 12754 12754 1 FTFGLDWVPK Unmodified 1208.623 0.62299547 1122 P45974-2;P45974;Q92995-2;Q92995 USP5;USP13 Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13 yes no 0 0 0 0 0 9 0 1 79.828 79.828 3 0.016459 23489 TMT1-8 52.79 11.31 30.448 66.165 56.371 50.774 85.568 90.3 29 65 58 51 87 87 1 1 1 1 1 1 8342.6 6222 1122 6167 9807 12755 12755 1 FTGSEIR Unmodified 808.40792 0.40791731 979;278 P31930;O75439 UQCRC1;PMPCB Cytochrome b-c1 complex subunit 1, mitochondrial;Mitochondrial-processing peptidase subunit beta no no 0 0 0 0 0 5 0 1 38.291 38.291 2 0.023785 9381 TMT1-4 94.662 47.86 233.59 182.05 260.85 212.25 324.71 342.51 220 190 261 214 331 330 1 1 1 1 1 1 36196 6223 979;278 6168 9808 12756 12756 1 FTGSQPFGQGVEHATANK Unmodified 1874.8911 0.89112484 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 47.234 47.234 3 5.2018E-43 12467 TMT1-7 193.42 166.45 1353 1888.7 1472.4 1193.8 1539.3 1918.6 1278 1884 1521 1199 1587 1841 7 7 7 7 7 7 447810 6224 554 6169 9809;9810;9811;9812 12757;12758;12759;12760;12761;12762;12763 12761 7 FTGTIASFNINTNAWVAR Unmodified 1982.001 0.0010096381 2023 Q6P1A2;Q6P1A2-2 LPCAT3 Lysophospholipid acyltransferase 5 yes no 0 0 0 0 0 9 0 1 74.937 74.937 3 1.9086E-05 21612 TMT1-8 68.261 29.858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6225 2023 6170 9813 12764 12764 1 FTHLFWFGDLNYR Unmodified 1714.8256 0.82561145 2320;143 Q92835;Q92835-2;Q92835-3;O15357;O15357-2 INPP5D;INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1;Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 no no 0 0 0 0 0 9 0 1 75.62 75.62 3 0.0003137 21857 TMT1-8 77.078 42.394 30.666 59.215 25.676 44.784 94.492 51.67 29 58 29 44 94 51 1 1 1 1 1 1 11051 6226 2320;143 6171 9814 12765 12765 1 FTIGDHSR Unmodified 931.45118 0.45117911 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 6 0 1 34.592 34.592 3 0.00066945 8026 TMT1-5 131.41 92.99 176.07 362.2 218.33 104.68 76.567 280.31 167 355 227 109 87 265 1 1 1 1 1 1 17990 6227 250 6172 9815 12766 12766 1 FTILDSQGK Unmodified 1007.5288 0.52876073 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 7.5 0.5 1 1 58.362 58.362 2 0.00012037 16775 TMT1-6 149.72 100.36 184.04 253.97 231.96 235.01 252.28 289.15 174 254 239 232 261 278 2 2 2 2 2 2 21425 6228 2789 6173 9816;9817 12767;12768 12767 2 FTITPPTAQVVGVLK Unmodified 1569.913 0.91302948 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 9 0 2 73.173 73.173 3;4 5.6988E-27 20911 TMT1-8 162.37 128.96 453.06 943.8 780.36 566.65 756.08 678.79 431 928 799 574 770 657 4 4 4 4 4 4 116650 6229 1277 6174 9818;9819 12769;12770;12771;12772 12770 4 FTITPSTTQVVGILK Unmodified 1603.9185 0.91850879 1143 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 0 9 0 1 72.851 72.851 3 3.5485E-27 20760 TMT1-8 166.38 123.59 207.62 267.39 224.91 226.97 295.17 238.89 196 268 233 225 300 232 2 2 2 2 2 2 62992 6230 1143 6175 9820 12773;12774 12773 2 FTIVWHLK Unmodified 1042.5964 0.59638679 2429 Q96K49-2;Q96K49 TMEM87B Transmembrane protein 87B yes no 0 0 0 0 0 9 0 1 63.822 63.822 3 0.0017217 17221 TMT1-8 87.616 54.354 61.365 79.668 78.586 64.759 85.182 82.849 58 80 80 65 87 80 1 1 1 1 1 1 8232.6 6231 2429 6176 9821 12775 12775 1 FTLDCTHPVEDGIMDAANFEQFLQER Unmodified 3082.3801 0.38007094 1017 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 0 5 0 1 84.535 84.535 4 4.8671E-16 27528 TMT1-4 93.397 86.285 23.415 37.789 0 31.311 20.532 30.328 22 37 0 29 22 29 1 1 0 1 1 1 4928.6 6232 1017 6177 9822 12776 12776 1 FTLGSVAGAVGATAVYPIDLVK Unmodified 2148.1831 0.18305633 298 O75746-2;O75746 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 0 0 9 0 2 87.101 87.101 3;4 1.6627E-16 26334 TMT1-8 99.569 75.154 62.609 72.517 55.833 50.643 94.207 82.592 59 73 58 51 95 80 2 2 2 2 2 2 10431 6233 298 6178 9823;9824 12777;12778 12778 2 FTLPPLVFAAYQLAFR Unmodified 1853.024 0.023976912 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 103.19 103.19 3 4.2781E-17 32195 TMT1-8 130.47 101.13 26.421 34.816 38.443 10.116 51.021 23.719 25 35 38 11 50 23 3 3 3 2 3 2 6226.4 6234 2444 6179 9825 12779;12780;12781 12780 3 FTLTQSEADADILFNFSHFK Unmodified 2330.1219 0.12191263 1760 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 0 8 0 1 81.945 81.945 3 1.292E-13 26124 TMT1-7 89.028 73.607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6235 1760 6180 9826 12782 12782 1 FTMVQVWPVR Unmodified 1261.6641 0.66414878 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 9 0 1 71.036 71.036 3 0.014212 20046 TMT1-8 54.584 28.645 53.633 118.42 82.817 88.476 89.295 144.56 51 116 87 87 94 138 1 1 1 1 1 1 3794.1 6236 1057 6181 9827 12783 12783 1 FTNSETAEHIAQGLR Unmodified 1672.8169 0.81689726 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 48.265 48.265 3 1.821E-10 13286 TMT1-4 116.99 84.252 253.22 367.42 231.36 282.17 303.58 285.55 239 365 247 276 312 276 2 2 2 2 2 2 29017 6237 1601 6182 9828 12784;12785 12784 2 FTPGTFTNQIQAAFR Unmodified 1697.8526 0.85255449 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 9 0 2 71.82 71.82 2;3 8.1981E-44 20354 TMT1-8 201 167.45 162.22 233.75 128.96 123.8 157.03 135.17 153 232 138 123 160 131 2 2 2 2 2 2 113510 6238 579 6183 9829;9830 12786;12787 12786 2 FTPPQPAEPWSFVK Unmodified 1629.8191 0.81912909 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 8.5 0.5 1 1 72.059 72.059 3;4 0.00098969 20445 TMT1-8 59.68 28.494 107.85 129.45 159.33 123 103.16 151.63 102 131 160 123 109 145 2 2 2 2 2 2 14989 6239 853 6184 9831;9832 12788;12789 12789 2 FTPVASK Unmodified 748.41194 0.41194006 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 8 0 1 44.513 44.513 2 0.016431 11451 TMT1-7 100.39 41.813 1741.9 2110.5 1213.3 1566.1 1222.6 2997.9 1640 2113 1311 1520 1336 2845 1 1 1 1 1 1 218800 6240 1881 6185 9833 12790 12790 1 FTQAGSEVSALLGR Unmodified 1434.7467 0.74669243 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 66.685 66.685 2 4.4689E-95 20081 TMT1-6 258.65 197 515.87 734.64 500.32 496.96 641.66 814.24 487 731 526 493 662 781 3 3 3 3 3 3 246790 6241 508 6186 9834;9835 12791;12792;12793 12791 3 FTQNLSAFR Unmodified 1082.5509 0.55089316 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 9 0 1 53.668 53.668 2 0.0018483 13247 TMT1-8 107.08 37.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6242 2876 6187 9836 12794 12794 1 FTTDAIALAMSR Unmodified 1295.6544 0.65437195 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 8 0 2 69.372 69.372 2;3 0.0009602 21198 TMT1-7 92.611 54.254 255.16 233.78 197.99 166.78 209.92 304.22 240 239 204 167 218 291 3 3 3 3 3 3 30307 6243 923 6188 9837;9838 12795;12796;12797 12795 3 FTTDDSICVLGISK Unmodified 1554.76 0.75995923 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 7 0 1 70.567 70.567 3 2.3514E-07 21601 TMT1-6 106.58 86.739 130.91 204.05 186.53 113.68 163.8 164.82 124 203 189 117 167 159 2 2 2 2 2 2 22371 6244 1559 6189 9839 12798;12799 12798 2 FTTEEEVDYTVEK Unmodified 1588.7144 0.71444883 3049 Q9Y697-2;Q9Y697-3;Q9Y697 NFS1 Cysteine desulfurase, mitochondrial yes no 0 0 0 0 0 3 0 1 58.213 58.213 3 0.0016544 18490 TMT1-2 71.976 55.292 23.273 21.203 38.039 13.584 28.933 22.626 22 22 37 15 29 22 1 1 1 1 1 1 4063.6 6245 3049 6190 9840 12800 12800 1 FTTGDAMSK Unmodified 956.42733 0.42733213 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 6.33 0.471 2 1 46.412 46.412 2;3 9.3324E-06 12646 TMT1-5 158.76 115.63 940.98 1402.1 801.63 922.7 1051.7 1279 888 1390 861 906 1088 1228 3 3 3 3 3 3 107500 6246 1747 6191 9841;9842;9843 12801;12802;12803 12801 3 FTTGDAMSKR Unmodified 1112.5284 0.52844316 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 1 8 0 1 38.963 38.963 3 0.0028002 9214 TMT1-7 85.821 51.128 231.22 335.9 168.85 175.82 228.74 383.63 218 333 183 174 239 366 1 1 1 1 1 1 14136 6247 1747 6192 9844 12804 12804 1 FTVAELK Unmodified 806.4538 0.45380487 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 0 7 0 1 57.263 57.263 2 0.014379 16379 TMT1-6 101.99 46.272 207.53 276.86 231.79 156.9 337.85 308.03 196 277 237 162 340 298 1 1 1 1 1 1 18983 6248 1704 6193 9845 12805 12805 1 FTVPMLK Unmodified 834.46735 0.46734645 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 9 0 1 64.774 64.774 2 0.013602 17648 TMT1-8 108.09 38.742 153.01 274.68 200.38 215.19 301.95 331.44 145 271 210 213 309 319 1 1 1 1 1 1 26233 6249 675 6194 9846 12806 12806 1 FVADGIFK Unmodified 895.48035 0.48035398 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 8 0 1 64.138 64.138 2 0.0055656 19195 TMT1-7 117.02 102.5 593.76 834.01 669.92 481.81 851.88 865.8 561 832 688 492 864 835 2 2 2 2 2 2 58309 6250 861 6195 9847 12807;12808 12808 2 FVALENISCK Unmodified 1179.5958 0.59579444 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 8 0 1 62.159 62.159 2 0.00014569 18396 TMT1-7 134.59 111.76 77.31 93.263 92.149 80.226 91.543 90.13 73 94 94 80 94 87 1 1 1 1 1 1 9394.3 6251 2238 6196 9848 12809 12809 1 FVALICEASGGGAFLVLPLGK Unmodified 2118.1547 0.15473309 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 9 0 4 96.284 96.284 3;4;5 4.7905E-46 29372 TMT1-8 162.59 132.05 647.97 721.8 671.56 541.3 763.26 777.72 611 730 686 545 779 750 9 9 9 9 9 9 168760 6252 971 6197 9849;9850;9851;9852 12810;12811;12812;12813;12814;12815;12816;12817;12818 12814 9 FVAPEEVLPFTEGDILEK Unmodified 2032.0405 0.040474416 1202 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 0 0 0 0 0 5 0 1 84.35 84.35 4 0.0010856 27461 TMT1-4 56.215 36.891 30.674 35.493 44.401 20.704 36.982 22.397 29 36 44 22 37 22 1 1 1 1 1 1 2802.9 6253 1202 6198 9853 12819 12819 1 FVASNQK Unmodified 792.413 0.41300269 1625 Q08722-3;Q08722-4;Q08722 CD47 Leukocyte surface antigen CD47 yes no 0 0 0 0 0 8 0 1 37.693 37.693 2 0.0091139 8712 TMT1-7 113.7 59.171 46.544 65.068 57.064 34.865 57.512 45.263 44 65 58 36 58 44 1 1 1 1 1 1 4393.6 6254 1625 6199 9854 12820 12820 1 FVATGHGK Unmodified 815.42899 0.42898711 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 8 0 1 32.317 32.317 3 0.0069845 6675 TMT1-7 78.516 38.471 989.54 1964.8 1000.2 1191 1443.1 1584.5 937 1925 1087 1169 1484 1525 1 1 1 1 1 1 80672 6255 1000 6200 9855 12821 12821 1 FVCAQLPNPVLESISVIDTPGILSGEK Unmodified 2882.5099 0.50994613 2802 Q9NZN3;Q9NZN3-2 EHD3 EH domain-containing protein 3 yes no 0 0 0 0 0 7.67 0.471 1 2 94.941 94.941 3;4 6.6073E-08 30957 TMT1-7 67.33 56.341 91.766 146.78 142.06 124.81 147.82 188.73 87 146 145 124 153 181 3 3 3 2 3 3 66429 6256 2802 6201 9856;9857;9858 12822;12823;12824 12824 3 FVCSPDEVMDTIDEGK Unmodified 1840.7859 0.78591599 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 4 0 1 71.807 71.807 3 0.00014967 22799 TMT1-3 77.222 59.522 30.731 35.653 34.63 45.527 26.658 46.143 29 36 36 44 29 44 1 1 1 1 1 1 7810.5 6257 998 6202 9859 12825 12825 1 FVDGEWYR Unmodified 1070.4821 0.48214489 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 57.032 57.032 2 0.015577 16760 TMT1-4 92.47 82.517 145.76 264.06 164.88 152.86 183.5 269.79 138 260 174 152 191 258 1 1 1 1 1 1 29847 6258 2071 6203 9860 12826 12826 1 FVDGLMIHSGDPVNYYVDTAVR Unmodified 2467.1842 0.18419532 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 6 0 1 71.335 71.335 3 7.7723E-10 22582 TMT1-5 90.464 85.111 23.218 44.794 27.282 28.979 58.06 67.633 22 44 29 29 59 65 1 1 1 1 1 1 12494 6259 861 6204 9861 12827 12827 1 FVDHVFDEQVIDSLTVK Unmodified 1990.0048 0.004757612 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 5.67 0.471 1 2 75.08 75.08 3;4 3.5459E-14 24084 TMT1-5 125.89 108.61 84.829 101.4 84.032 80.593 97.777 151.78 80 102 87 80 102 145 2 2 2 2 2 2 49390 6260 478 6205 9862;9863;9864 12828;12829;12830 12830 3 FVDILGLR Unmodified 931.5491 0.54910224 2287 Q8WYA6-4;Q8WYA6;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 0 9 0 1 72.725 72.725 2 0.012342 20696 TMT1-8 85.813 47.491 61.6 87.878 32.077 29.004 41.547 91.556 58 87 36 29 44 87 1 1 1 1 1 1 8264.4 6261 2287 6206 9865 12831 12831 1 FVDKTEWIK Unmodified 1164.6179 0.61791009 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 1 8 0 1 58.029 58.029 3 0.033893 16772 TMT1-7 58.37 27.481 99.568 153.55 87.352 104.18 111.61 143.92 94 152 94 102 116 138 1 1 1 1 1 1 6082.9 6262 1994 6207 9866 12832 12832 1 FVDLYGAQK Unmodified 1039.5338 0.53384611 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 7.5 0.5 1 1 58.876 58.876 2;3 0.00017433 16960 TMT1-6 147.19 86.595 402.42 582.23 400.1 341.48 509.03 437.46 380 579 418 343 516 424 3 3 3 3 3 3 72135 6263 1076 6208 9867;9868 12833;12834;12835 12833 3 FVEFDMKPVCK Unmodified 1398.6676 0.66757917 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 1 8 0 2 60.615 60.615 3;4 4.8527E-05 17800 TMT1-7 107.83 82.51 578.38 477.33 491.87 540.25 575.04 1173.2 544 493 506 531 612 1116 3 3 3 3 3 3 87663 6264 1149;2097 6209 9869;9870 12836;12837;12838 12838 3 FVEFFGPGVAQLSIADR Unmodified 1851.9519 0.95193418 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 8.5 0.5 1 1 82.196 82.196 2;3 4.5557E-10 26320 TMT1-7 91.858 57.991 46.57 50.027 65.582 33.933 80.076 59.543 44 51 65 36 80 58 1 1 1 1 1 1 5499 6265 832 6210 9871;9872 12839;12840 12839 2 FVEGLPINDFSR Unmodified 1392.7038 0.70376498 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 6.33 0.471 2 1 68.829 68.829 2;3 1.6379E-25 21511 TMT1-5 202.31 143.15 366.05 366.48 1105.5 346.59 384.82 483.64 349 385 1058 384 399 464 4 4 4 4 4 4 176770 6266 1074 6211 9873;9874;9875 12841;12842;12843;12844 12841 4 FVELVHQQK Unmodified 1126.6135 0.61349341 2235 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 0 7 0 1 47.136 47.136 3 0.041049 12396 TMT1-6 47.603 17.667 92.311 115.92 76.616 56.647 115.92 81.972 87 116 80 58 116 80 1 1 1 1 1 1 6988.3 6267 2235 6212 9876 12845 12845 1 FVESDADEELLFNIPFTGNVK Unmodified 2383.1584 0.15835772 2599 Q9GZP4-2;Q9GZP4 PITHD1 PITH domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 87.829 87.829 3 8.6924E-14 28944 TMT1-5 106.75 91.658 23.267 43.853 19.739 29.562 50.976 29.459 22 43 22 29 51 29 2 2 2 2 2 2 8490.8 6268 2599 6213 9877 12846;12847 12846 2 FVESVDEYQFVER Unmodified 1645.7624 0.76240208 1698 Q13405 MRPL49 39S ribosomal protein L49, mitochondrial yes yes 0 0 0 0 0 3 0 1 64.506 64.506 3 0.0007251 20981 TMT1-2 77.527 57.42 38.177 58.703 26.014 37.023 41.179 91.567 36 58 29 36 44 87 1 1 1 1 1 1 4466.7 6269 1698 6214 9878 12848 12848 1 FVFAAVK Unmodified 780.45341 0.45341094 1211 P50148;P29992;O95837 GNAQ;GNA11;GNA14 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14 yes no 0 0 0 0 0 9 0 1 62.273 62.273 2 0.0082772 16587 TMT1-8 140.79 75.924 313.2 665.76 537.03 420.05 430.35 582.55 298 654 552 421 449 558 2 2 2 2 2 2 54686 6270 1211 6215 9879 12849;12850 12849 2 FVFDRPLPVSR Unmodified 1331.735 0.73500553 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 1 9 0 1 54.687 54.687 3 4.3894E-05 13619 TMT1-8 102.28 70.055 191.74 226.99 223.28 173.88 275.48 304.48 181 229 227 176 281 293 1 1 1 1 1 1 15747 6271 890 6216 9880 12851 12851 1 FVFEIIPASWDQNR Unmodified 1720.8573 0.85730551 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 8 0 1 84.178 84.178 3 1.4923E-07 26997 TMT1-7 110.38 80.691 46.556 42.435 74.289 43.018 34.38 68.309 44 44 73 44 37 65 2 2 2 2 2 2 13555 6272 1095 6217 9881 12852;12853 12853 2 FVFGTTPEDILR Unmodified 1393.7242 0.72416608 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6.33 2.56 1 1 2 1 1 73.862 73.862 2 3.9335E-44 22969 TMT1-7 227.08 145.53 5494.7 8529.6 6315.1 5608.2 7125.3 8369.4 5196 8464 6566 5598 7333 8042 12 12 12 12 12 12 2650800 + 6273 32;554 6218 9882;9883;9884;9885;9886;9887 12854;12855;12856;12857;12858;12859;12860;12861;12862;12863;12864;12865 12864 12 FVFHQEQVYCPDCAK Unmodified 1926.8393 0.83928896 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 52.188 52.188 3 2.3823E-17 14963 TMT1-5 147.35 123.93 380.98 545.98 427.7 380.34 505.41 490.86 360 544 443 380 516 474 3 3 3 3 3 3 119820 6274 1735 6219 9888;9889 12866;12867;12868 12866 3 FVFLLDR Unmodified 908.51199 0.51198846 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 9 0 1 71.927 71.927 2 0.012808 20462 TMT1-8 111.73 86.109 138.25 203.04 216.99 134.74 168.25 220.12 131 203 218 138 174 211 2 2 2 2 2 2 44264 6275 1666 6220 9890 12869;12870 12870 2 FVFSLVDAMNGK Unmodified 1326.6642 0.66420836 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 82.395 82.395 3 8.5699E-06 24463 TMT1-8 103.34 79.491 30.729 35.646 35.034 36.455 42.78 45.683 29 36 36 36 44 44 1 1 1 1 1 1 6912.6 6276 1075 6221 9891 12871 12871 1 FVGDPALVLNDIHKK Unmodified 1664.925 0.92499115 1750 Q14118 DAG1 Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan yes yes 0 0 0 0 1 8 0 1 60.468 60.468 4 0.00030807 17703 TMT1-7 76.262 65.981 115.14 206.04 131.19 116.35 139.21 207.1 109 203 138 116 145 198 1 1 1 1 1 1 11345 6277 1750 6222 9892 12872 12872 1 FVGIKDEDQLEAFLK Unmodified 1750.9142 0.91415169 2491 Q99757 TXN2 Thioredoxin, mitochondrial yes yes 0 0 0 0 1 7 0 1 72.814 72.814 3 0.00011313 22577 TMT1-6 85.16 69.316 37.83 73.926 71.5 64.201 137.29 119.74 36 73 73 65 138 116 1 1 1 1 1 1 10034 6278 2491 6223 9893 12873 12873 1 FVGQDVEGER Unmodified 1134.5306 0.53055165 763 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 0 3 0 1 42.149 42.149 2 0.0067696 12155 TMT1-2 88.948 76.942 54.02 64.454 63.587 58.435 62.182 90.968 51 65 65 58 65 87 1 1 1 1 1 1 7125.1 6279 763 6224 9894 12874 12874 1 FVHGEGLR Unmodified 913.477 0.47699993 963 P30536 TSPO Translocator protein yes yes 0 0 0 0 0 5.5 0.5 1 1 33.641 33.641 3 0.00016736 7636 TMT1-5 147.34 89.092 221.69 351.13 314.53 213.9 299.41 254.76 210 349 320 218 304 247 3 3 3 3 3 3 86573 6280 963 6225 9895;9896 12875;12876;12877 12876 3 FVHSENQHLVSPEALDFLDK Unmodified 2324.1437 0.14371071 1494 P68400;P68400-2;Q8NEV1 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 0 0 6 0 1 63.113 63.113 4 7.6987E-24 19372 TMT1-5 136.26 118.2 37.793 81.379 71.324 58.116 54.611 98.646 36 80 73 58 58 94 1 1 1 1 1 1 8874 6281 1494 6226 9897 12878 12878 1 FVIEENLHCIIK Unmodified 1513.7963 0.79628516 1631 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 0 7 0 1 63.217 63.217 3 7.8977E-06 18743 TMT1-6 90.653 80.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6282 1631 6227 9898 12879 12879 1 FVIKPIDK Unmodified 958.58515 0.5851534 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 1 9 0 1 53.873 53.873 3 0.002512 13285 TMT1-8 85.731 55.476 2368.3 4254.1 3037.7 2419.9 3626 3598.7 2244 4196 3154 2442 3691 3473 2 2 2 2 2 2 286270 6283 894;720;1015 6228 9899 12880;12881 12880 2 FVIKPIDKK Unmodified 1086.6801 0.68011642 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 2 9 0 2 48.812 48.812 3;4 0.0064463 11298 TMT1-8 102.06 44.463 618.71 1538.9 1109.7 1000.9 1090.4 1510.3 590 1503 1155 995 1136 1446 2 2 2 2 2 2 232710 6284 894;720;1015 6229 9900;9901 12882;12883 12882 2 FVINYDYPNSSEDYVHR Unmodified 2116.949 0.94903365 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 5 0 1 57.796 57.796 3 9.6795E-14 17052 TMT1-4 119.56 113.65 46.647 73.987 32.256 45.393 41.307 76.639 44 73 36 44 44 73 1 1 1 1 1 1 13570 6285 2321 6230 9902 12884 12884 1 FVKEPAFEDITLESER Unmodified 1908.9469 0.94690838 273 O75400-2;O75400-3;O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 1 5 0 1 62.382 62.382 3 0.0017404 18873 TMT1-4 65.808 39.372 84.969 70.495 86.612 64.285 84.947 90.318 80 73 87 65 87 87 1 1 1 1 1 1 10581 6286 273 6231 9903 12885 12885 1 FVLDHEDGLNLNEDLENFLQK Unmodified 2501.2074 0.20743318 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 83.501 83.501 4 2.687E-08 27153 TMT1-4 90.654 75.4 30.891 44.733 0 47.449 34.192 37.4 29 44 0 44 36 36 1 1 0 1 1 1 2404.3 6287 1805 6232 9904 12886 12886 1 FVLHAVQLVK Unmodified 1152.7019 0.70191449 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 9 0 1 60.031 60.031 3 0.0012314 15714 TMT1-8 83.948 54.786 258.56 261.2 325.94 220.28 272.5 268.32 244 267 326 224 279 259 1 1 1 1 1 1 15655 6288 934 6233 9905 12887 12887 1 FVLINWTGEGVNDVR Unmodified 1717.8788 0.87876924 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 0 8.33 0.471 2 1 75.854 75.854 2;3 1.8377E-18 23824 TMT1-7 160.38 146.22 107.82 175.79 124.31 117.97 75.095 168.42 102 174 130 116 80 160 3 3 3 3 2 3 118520 6289 2887 6234 9906;9907;9908 12888;12889;12890;12891 12889 4 FVLINWTGEGVNDVRK Unmodified 1845.9737 0.97373226 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 1 9 0 1 67.644 67.644 3 1.9766E-05 18773 TMT1-8 82.578 41.177 77.451 102.29 60.85 66.286 60.208 137.93 73 102 65 65 65 131 1 1 1 1 1 1 13231 6290 2887 6235 9909 12892 12892 1 FVLKPQR Unmodified 886.53887 0.53887191 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 1 9 0 1 42.711 42.711 3 0.017152 8970 TMT1-8 69.093 39.783 122.54 197.68 155.86 107.34 133.18 181.68 116 196 160 109 138 174 1 1 1 1 1 1 15782 6291 1160 6236 9910 12893 12893 1 FVLQDMESDIIPEDYDER Unmodified 2212.9834 0.98342982 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 3 0 1 78.863 78.863 3 0.00093761 26509 TMT1-2 46.663 35.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6292 289 6237 9911 12894 12894 1 FVLSGANIMCPGLTSPGAK Unmodified 1918.9645 0.96448948 2909 Q9ULC4-2;Q9ULC4;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 0 9 0 2 71.972 71.972 3;4 7.5046E-12 20452 TMT1-8 98.165 74.684 131.3 173.81 147.87 123.47 114.86 236.57 124 174 152 123 123 225 2 2 2 2 2 2 11207 6293 2909 6238 9912;9913 12895;12896 12896 2 FVLSSGK Unmodified 736.41194 0.41194006 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 9 0 1 50.536 50.536 2 0.013576 12048 TMT1-8 108.24 32.927 1781.7 2463.2 1977.7 1731.3 2217.1 2416.2 1683 2459 2044 1730 2275 2326 2 2 2 2 2 2 539960 6294 918 6239 9914 12897;12898 12898 2 FVLVQENRPTLTDIVELR Unmodified 2141.1845 0.18445331 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 7.25 0.433 3 1 71.093 71.093 2;3;4 1.0277E-35 21746 TMT1-6 184.01 175.01 763 785.97 760.94 670.16 718.61 961.28 719 799 778 667 748 921 7 7 7 7 7 7 263550 6295 1684 6240 9915;9916;9917;9918 12899;12900;12901;12902;12903;12904;12905;12906 12899 8 FVMEVEVDGQK Unmodified 1279.6118 0.61183843 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7;Q96SI9-2;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein yes no 0 0 0 0 0 5 0 1 61.946 61.946 3 0.00014222 18652 TMT1-4 101.95 71.623 46.515 73.62 54.748 75.351 62.467 60.045 44 73 58 73 65 58 1 1 1 1 1 1 6503.9 6296 1655 6241 9919 12907 12907 1 FVMQEEFSR Unmodified 1171.5332 0.53319418 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6 0.816 1 1 1 55.472 55.472 2 0.00039367 16231 TMT1-5 139.02 89.187 527.13 1018.7 711.31 574.42 677.95 902.74 500 1002 740 576 703 865 2 2 2 2 2 2 161510 6297 955 6242 9920;9921;9922 12908;12909;12910 12909 3 FVNLFPEVKPTIQDVLR Unmodified 2014.1251 0.12514752 335 O94973-2;O94973;O94973-3 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 1 9 0 1 78.964 78.964 3 0.028712 23170 TMT1-8 44.998 17.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6298 335 6243 9923 12911 12911 1 FVNLGIEPPK Unmodified 1112.623 0.62299547 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 8 0 2 64.574 64.574 2;3 0.00088397 19252 TMT1-7 79.489 46.649 92.242 131.92 74.553 81.414 84.16 90.34 87 131 80 80 87 87 1 1 1 1 1 1 9118.7 6299 1033 6244 9924;9925 12912;12913 12913 2 FVPAEMGTHTVSVK Unmodified 1501.7599 0.75989966 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 51.051 51.051 3 5.576E-19 13916 TMT1-7 161.76 139.92 1308.8 1620.9 1379.6 1189.1 1500.7 1739.5 1235 1628 1420 1189 1544 1672 7 7 7 7 7 7 340630 6300 831 6245 9926;9927;9928;9929 12914;12915;12916;12917;12918;12919;12920 12917 7 FVPFAAVAAANCINIPLMR Unmodified 2074.0856 0.085607665 2664;2561 Q9H9B4;Q9BWM7 SFXN1;SFXN3 Sideroflexin-1;Sideroflexin-3 no no 0 0 0 0 0 9 0 1 87.837 87.837 3 2.2934E-21 26608 TMT1-8 130.98 93.825 45.699 34.475 44.697 13.731 0 46.904 43 36 44 15 0 44 1 1 1 1 0 1 8811.8 6301 2664;2561 6246 9930 12921 12921 1 FVPFSFSLLSSK Unmodified 1357.7282 0.72818882 3009 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 yes yes 0 0 0 0 0 9 0 1 84.25 84.25 3 0.0019034 25190 TMT1-8 67.456 33.571 23.159 28.441 51.033 52.206 26.351 46.152 22 29 51 51 29 44 1 1 1 1 1 1 2829 6302 3009 6247 9931 12922 12922 1 FVPGAWLAGEGVDVTSLR Unmodified 1872.9734 0.9733979 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 8 0 2 80.37 80.37 2;3 8.9023E-14 25484 TMT1-7 125.03 101.32 46.354 88.281 69.457 65.462 76.758 114 44 87 72 65 80 109 2 2 2 2 2 2 62288 6303 699 6248 9932;9933 12923;12924 12923 2 FVPLPASAK Unmodified 928.5382 0.53820321 152 O15533-2;O15533;O15533-3 TAPBP Tapasin yes no 0 0 0 0 0 9 0 1 56.94 56.94 2 0.00023291 14480 TMT1-8 138.54 109.4 238.36 352.7 216.82 265.74 235.02 354.67 225 350 232 259 248 339 2 2 2 2 2 2 51160 6304 152 6249 9934 12925;12926 12925 2 FVPPALEK Unmodified 899.51165 0.5116541 2209 Q8NCW5-2;Q8NCW5 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 0 7 0 1 58.66 58.66 2 0.025235 16904 TMT1-6 85.212 38.861 61.32 79.544 86.213 63.737 115.34 89.451 58 80 87 65 116 87 1 1 1 1 1 1 10474 6305 2209 6250 9935 12927 12927 1 FVPYLIAGIQHSCQDIGAK Unmodified 2116.0775 0.0775454 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 9 0 1 72.49 72.49 4 1.7716E-05 20703 TMT1-8 62.475 40.941 45.73 50.75 25.722 53.43 41.487 60.644 43 51 29 51 44 58 1 1 1 1 1 1 6425.2 6306 667 6251 9936 12928 12928 1 FVPYSYFSR Unmodified 1164.5604 0.56039521 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 9 0 1 63.497 63.497 2 0.0060257 17106 TMT1-8 82.241 46.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6307 839 6252 9937 12929 12929 1 FVPYYDLFMPSLK Unmodified 1618.8105 0.81053824 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 9 0 1 87.309 87.309 3 0.00022082 26345 TMT1-8 83.314 0 23.153 28.424 52.109 28.084 26.947 61.059 22 29 51 29 29 58 1 1 1 1 1 1 8624.3 6308 65 6253 9938 12930 12930 1 FVQEVVQSQQVAVGR Unmodified 1672.8897 0.88966827 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 6.5 0.5 1 1 58.616 58.616 2;3 0.00058809 16948 TMT1-6 55.546 34.593 15.777 29.315 28.549 22.241 5.5003 23.295 15 29 29 22 7 22 1 1 1 1 1 1 6117.1 6309 2325 6254 9939;9940 12931;12932 12932 2 FVQGLDIGPTK Unmodified 1173.6394 0.63937381 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 62.519 62.519 2 4.1812E-07 18469 TMT1-6 150.09 97.545 129.64 219.75 207.04 166.62 189.86 218.44 123 218 211 167 196 210 2 2 2 2 2 2 26245 6310 758 6255 9941;9942 12933;12934 12933 2 FVQNVTSDLQLAAEFAAK Unmodified 1951.0051 0.005091963 1526 P85037-2;P85037 FOXK1 Forkhead box protein K1 yes no 0 0 0 0 0 7 0 1 87.977 87.977 3 0.00020239 28312 TMT1-6 67.994 49.856 14.783 22.053 21.415 22.248 27.728 46.113 14 22 22 22 29 44 1 1 1 1 1 1 2898.5 6311 1526 6256 9943 12935 12935 1 FVSELWK Unmodified 907.48035 0.48035398 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 8.5 0.5 1 1 66.199 66.199 2 0.0037674 20016 TMT1-7 138.62 50.025 5397.3 8656.4 8161.8 5624.8 8062.2 7166.9 5116 8606 8280 5730 8190 6939 3 3 3 3 3 3 1333300 6312 1019 6257 9944;9945 12936;12937;12938 12936 3 FVSELWKDVDR Unmodified 1392.7038 0.70376498 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 7 0 1 64.538 64.538 3 0.012213 19205 TMT1-6 65.234 42.008 185.27 163.5 101.55 126.64 92.765 236.14 174 167 109 123 102 224 1 1 1 1 1 1 37903 6313 1019 6258 9946 12939 12939 1 FVSISDLLVPK Unmodified 1216.7067 0.7067251 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 9 0 1 79.702 79.702 3 9.1924E-09 23514 TMT1-8 136.63 91.276 487.47 805.31 524.48 664.12 684.86 855.64 461 796 559 648 712 821 2 2 2 2 2 2 110680 6314 1217 6259 9947 12940;12941 12941 2 FVTAIWNLLVTTGQEVK Unmodified 1918.0564 0.056399252 1310 P55060-3;P55060 CSE1L Exportin-2 yes no 0 0 0 0 0 9 0 1 102.84 102.84 3 0.029221 32153 TMT1-8 38.824 15.945 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6315 1310 6260 9948 12942 12942 1 FVTHVSDWGALATISTLEAVR Unmodified 2272.1852 0.18518159 292 O75629 CREG1 Protein CREG1 yes yes 0 0 0 0 0 9 0 1 78.647 78.647 3 3.8059E-13 23067 TMT1-8 88.983 73.59 61.687 56.822 43.702 67.401 55.246 67.714 58 58 44 65 58 65 2 2 1 2 2 2 8784 6316 292 6261 9949 12943;12944 12944 2 FVTNTTK Unmodified 809.42832 0.42831841 2614 Q9H0R4 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes yes 0 0 0 0 0 8 0 1 40.929 40.929 2 0.010017 9998 TMT1-7 109.86 53.852 176.9 211.27 205.2 189.68 248.02 260.49 167 213 210 189 254 251 1 1 1 1 1 1 15063 6317 2614 6262 9950 12945 12945 1 FVTTEFEPCFDAADFIR Unmodified 2063.9299 0.92987811 1220 P50440-3;P50440-2;P50440 GATM Glycine amidinotransferase, mitochondrial yes no 0 0 0 0 0 6 0 1 82.526 82.526 3 1.713E-05 26925 TMT1-5 80.609 73.696 30.727 35.641 35.357 29.212 20.079 46.331 29 36 36 29 22 44 1 1 1 1 1 1 5887.8 6318 1220 6263 9951 12946 12946 1 FVTVQTISGTGALR Unmodified 1448.7987 0.798728 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 60.242 60.242 3 8.5E-05 15770 TMT1-8 74.475 36.48 53.952 88.012 54.919 51.279 63.317 67.483 51 87 58 51 65 65 1 1 1 1 1 1 20049 6319 396 6264 9952 12947 12947 1 FVTWIEGVMR Unmodified 1236.6325 0.6325143 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 9 0 1 80.516 80.516 2 0.0010624 23781 TMT1-8 91.867 55.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6320 401 6265 9953 12948 12948 1 FVVGYALDYNEYFR Unmodified 1754.8304 0.83042206 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 8 0 1 78.954 78.954 3 1.4301E-05 24952 TMT1-7 96.734 83.33 70.24 56.148 49.509 43.777 72.551 52.296 66 58 51 44 73 51 2 2 2 2 2 2 7395.7 6321 395 6266 9954 12949;12950 12949 2 FVVLETGGEAGITR Unmodified 1447.7671 0.76709352 2086 Q7Z2W4;Q7Z2W4-3;Q7Z2W4-2 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 0 6 0 2 61.502 61.502 2;3 8.5433E-05 18731 TMT1-5 95.498 70.644 37.84 81.51 63.322 43.264 56.063 76.218 36 80 65 44 58 73 1 1 1 1 1 1 10530 6322 2086 6267 9955;9956 12951;12952 12951 2 FVVLFNPLEQER Unmodified 1489.7929 0.79291434 1188 P49641-2;P49641-1;P49641 MAN2A2 Alpha-mannosidase 2x yes no 0 0 0 0 0 8 0 1 78.777 78.777 2 0.014461 24938 TMT1-7 70.389 47.748 15.7 36.654 35.356 29.59 0 23.452 15 36 36 29 0 22 1 1 1 1 0 1 4947.9 6323 1188 6268 9957 12953 12953 1 FVVPKPR Unmodified 841.51741 0.51740818 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 1 9 0 1 44.014 44.014 3 0.0063895 9513 TMT1-8 88.643 65.214 1016.3 1355.8 1167.1 1103.9 1415.6 1618.3 960 1357 1204 1098 1455 1556 2 2 2 2 2 2 42433 6324 1537 6269 9958 12954;12955 12955 2 FVVQLFAEEWGQYVDLPK Unmodified 2167.099 0.098992348 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 99.325 99.325 3 0.022125 30797 TMT1-8 39.585 23.82 0 7.1952 15.121 15.212 14.991 0 0 7 15 15 15 0 0 1 1 1 1 0 1545.3 6325 2382 6270 9959 12956 12956 1 FVVYSYK Unmodified 904.46945 0.46945494 215 O60234 GMFG Glia maturation factor gamma yes yes 0 0 0 0 0 9 0 1 57.075 57.075 2 0.0068296 14613 TMT1-8 151.51 81.243 521.51 765.43 608.52 406.25 588.99 702.74 493 762 624 415 604 675 2 2 2 2 2 2 193890 6326 215 6271 9960 12957;12958 12958 2 FVWGPQDK Unmodified 975.48142 0.48141661 2805 Q9NZT2-2;Q9NZT2 OGFR Opioid growth factor receptor yes no 0 0 0 0 0 8 0 1 58.325 58.325 2 0.0096932 16909 TMT1-7 100.19 36.607 99.899 100.51 76.751 73.517 90.239 137.07 94 102 80 73 94 131 1 1 1 1 1 1 6839.3 6327 2805 6272 9961 12959 12959 1 FVWNGHLLR Unmodified 1140.6192 0.61924749 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 9 0 1 55.17 55.17 3 0.00027241 13787 TMT1-8 113.26 87.806 92.226 115.68 91.091 72.085 120.96 127.67 87 116 94 73 123 123 1 1 1 1 1 1 10548 6328 2744 6273 9962 12960 12960 1 FVYPVPYTTRPPR Unmodified 1591.8511 0.85109792 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 1 9 0 1 51.751 51.751 3 0.0020608 12487 TMT1-8 64.121 47.589 38.154 43.528 42.817 44.609 49.478 52.954 36 44 44 44 51 51 1 1 1 1 1 1 6005.8 6329 1534 6274 9963 12961 12961 1 FVYTPAMESVCGYFHR Unmodified 1962.8757 0.87567447 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 66.175 66.175 3 5.4239E-24 19977 TMT1-7 176.58 173.48 100.55 123 128.97 109.73 91.49 82.669 95 124 131 109 95 80 2 2 2 2 2 2 22630 6330 410 6275 9964;9965 12962;12963 12962 2 FWAYEQYK Unmodified 1133.5182 0.51819605 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 8 0 1 61.886 61.886 2 0.00027108 18290 TMT1-7 119.27 58.685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6331 2019 6276 9966 12964 12964 1 FWEMIGEEHGIDLAGSDR Oxidation (M) 2076.9211 0.92110434 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 4.5 0.5 1 1 65.981 65.981 3 2.681E-07 20249 TMT1-4 93.371 51.958 139.17 104.17 145.13 107.84 140.98 197.45 131 109 145 109 146 189 2 2 2 2 2 2 77591 6332 2650 6277 9967;9968 12965;12966 12966 306 2 FWEMIGEEHGIDLAGSDR Unmodified 2060.9262 0.92618972 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 5.5 0.5 1 1 71.693 71.693 3 4.5247E-43 22486 TMT1-4 194.94 165.36 541.08 697.74 441.89 568.12 472.21 932.07 510 697 473 552 507 887 6 6 6 6 6 6 278560 6333 2650 6277 9969;9970 12967;12968;12969;12970;12971;12972 12967 6 FWEVISDEHGIDPTGTYHGDSDLQLDR Unmodified 3101.4003 0.40027234 537 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 0 4.5 0.5 1 1 69.203 69.203 4 2.8178E-29 21471 TMT1-4 124.51 56.068 408.05 559.92 375.38 318.62 408 394.5 385 558 393 319 417 381 3 3 3 3 3 3 281630 6334 537 6278 9971;9972 12973;12974;12975 12974 3 FWEVISDEHGIDPTGTYHGDSDLQLER Unmodified 3115.4159 0.4159224 1493 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain yes no 0 0 0 0 0 4.33 0.471 2 1 68.757 68.757 4;5 3.4769E-36 21641 TMT1-3 132.35 117.22 232.22 304.33 207.23 206.82 202.1 265 219 304 218 204 211 254 4 4 4 4 4 4 126320 6335 1493 6279 9973;9974;9975 12976;12977;12978;12979 12977 4 FWHDTCFR Unmodified 1167.492 0.49199807 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 8 0 1 47.614 47.614 3 0.017101 12601 TMT1-7 65.156 40.28 77.217 132.94 74.213 89.372 68.879 98.239 73 131 80 87 73 94 1 1 1 1 1 1 12161 6336 1735 6280 9976 12980 12980 1 FWLAVQDLK Unmodified 1118.6124 0.61243078 1200 P49758-2;P49758-6;P49758-11;P49758-7;P49758-10;P49758-9;P49758-16;P49758-5;P49758-8;P49758-3;P49758;P49758-13;P49758-14;P49758-15;P49758-12 RGS6 Regulator of G-protein signaling 6 yes no 0 0 0 0 0 9 0 1 76.628 76.628 2 0.0022447 22261 TMT1-8 109.11 62.043 46.609 42.581 65.316 49.925 102.38 58.907 44 44 65 51 102 58 1 1 1 1 1 1 9558.4 6337 1200 6281 9977 12981 12981 1 FWQTYSSAEEVLQK Unmodified 1714.8203 0.82025131 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 7 0 1 71.75 71.75 3 1.819E-12 22102 TMT1-6 113.72 104.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6338 2 6282 9978 12982 12982 1 FWVNILK Unmodified 918.53272 0.5327239 123 O15031;Q9Y4D7 PLXNB2;PLXND1 Plexin-B2;Plexin-D1 no no 0 0 0 0 0 9 0 1 75.394 75.394 2 0.029614 21814 TMT1-8 89.673 42.592 53.617 110.82 91.944 63.849 91.234 121.05 51 109 94 65 94 116 1 1 1 1 1 1 6662.4 6339 123 6283 9979 12983 12983 1 FWWENEGVFSMQQR Oxidation (M) 1858.8097 0.80970339 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 1 0 0 7.5 0.5 1 1 72.525 72.525 2;3 0.00027071 22490 TMT1-7 85.837 73.636 192.35 295.79 242.36 162.97 272.29 259.8 182 294 248 167 276 251 2 2 2 2 2 2 74322 6340 489 6284 9980;9981 12984;12985 12985 71 2 FWWENEGVFSMQQR Unmodified 1842.8148 0.81478877 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 8 0 1 77.244 77.244 3 0.0064169 24332 TMT1-7 57.53 36.577 23.187 52.264 26.087 45.755 41.583 68.103 22 51 29 44 44 65 1 1 1 1 1 1 3558.8 6341 489 6284 9982 12986 12986 1 FWYFVSQLK Unmodified 1216.6281 0.62808085 1568 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 0 9 0 2 83.811 83.811 2;3 0.00014914 25026 TMT1-8 148.05 106.08 93.301 84.317 117.2 86.66 76.846 83.087 88 87 117 87 80 80 2 2 2 2 2 2 18803 6342 1568 6285 9983;9984 12987;12988 12987 2 FYALSASFEPFSNK Unmodified 1606.7668 0.76675917 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 9 0 3 75.82 75.82 2;3;4 6.8949E-37 21903 TMT1-8 207.29 157.25 745.47 1587 1224.3 1069 1114 1400.9 709 1558 1267 1064 1158 1344 4 4 4 4 4 4 512430 6343 918 6286 9985;9986;9987 12989;12990;12991;12992 12989 4 FYAYNPLAGGLLTGK Unmodified 1583.8348 0.83477916 176 O43488;Q8NHP1 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 0 0 0 0 0 9 0 1 77.337 77.337 3 3.4837E-16 22608 TMT1-8 123.38 90.18 245.96 302.79 244.27 250.33 270.36 412.29 232 304 254 247 283 394 2 2 2 2 2 2 88330 6344 176 6287 9988 12993;12994 12994 2 FYDANYDGKEYDPVEAR Unmodified 2050.8909 0.89085007 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 1 4 0 1 54.345 54.345 3 2.2958E-35 15971 TMT1-3 185.02 167.43 380.66 632.69 588.06 428.66 450.46 594.77 361 628 598 432 469 570 2 2 2 2 2 2 83283 6345 1862 6288 9989 12995;12996 12995 2 FYDSNTVK Unmodified 972.45526 0.45526144 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 6 0 1 45.963 45.963 2 0.013266 12544 TMT1-5 95.502 42.335 199.95 312.8 212.63 175.07 129.59 256.41 189 310 222 174 140 244 1 1 1 1 1 1 20067 6346 1680 6289 9990 12997 12997 1 FYEADCYIVLK Unmodified 1419.6744 0.67443869 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 69.62 69.62 3 0.0026363 21886 TMT1-5 76.143 63.977 84.802 108.88 82.158 112.58 88.187 144.59 80 109 87 109 94 138 1 1 1 1 1 1 13281 6347 1666 6290 9991 12998 12998 1 FYEAEEYAEEFR Unmodified 1581.6624 0.66235368 960 P30511-2;P30511;P30511-3 HLA-F HLA class I histocompatibility antigen, alpha chain F yes no 0 0 0 0 0 3 0 1 66.741 66.741 2 4.7613E-06 21836 TMT1-2 94.692 89.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6348 960 6291 9992 12999 12999 1 FYEAFSK Unmodified 890.41742 0.41741937 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 7.5 0.5 1 1 58.023 58.023 2 0.0075382 16778 TMT1-7 126.67 97.291 733 1907.9 1425.1 1036 1479.8 1576 700 1862 1469 1051 1512 1518 4 4 4 4 4 4 201170 6349 561 6292 9993;9994 13000;13001;13002;13003 13002 4 FYEEEENGGVWEGFGDFSPTDVHR Unmodified 2802.1834 0.18340327 798 P19838-2;P19838;P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 4 0 1 74.082 74.082 3 0.00036218 23749 TMT1-3 52.79 49.793 23.448 14.135 14.597 14.977 29.125 15.159 22 15 15 15 29 15 1 1 1 1 1 1 4181.9 6350 798 6293 9995 13004 13004 1 FYEEVHDLER Unmodified 1335.6095 0.60953025 1315;1316;2488 P55209;P55209-2;P55209-3;Q99733;Q99733-2 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 0 0 0 0 0 2.5 0.5 1 1 50.761 50.761 3 3.827E-15 15335 TMT1-1 188.49 134.92 1238.4 1688.8 1420.6 1060.1 1257.1 1571.7 1170 1688 1456 1069 1300 1508 5 5 5 5 5 5 401820 6351 1315;1316;2488 6294 9996;9997 13005;13006;13007;13008;13009 13006 5 FYEGTFNWESVK Unmodified 1505.6827 0.68269519 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 7 0 1 69.987 69.987 3 0.00030754 21368 TMT1-6 89.301 61.004 146.48 150.58 139.84 163.25 116.97 152.3 138 153 145 159 124 146 2 2 2 2 2 2 33080 6352 2172 6295 9998 13010;13011 13010 2 FYEQFSK Unmodified 947.43888 0.43888309 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 6.5 0.5 1 1 54.204 54.204 2 0.0034184 15791 TMT1-5 86.833 45.531 846.3 1469.7 1148.5 973.62 1022.5 1390.7 802 1453 1187 971 1066 1332 2 2 2 2 2 2 215590 6353 545 6296 9999;10000 13012;13013;13014 13012 3 FYFENALSK Unmodified 1117.5444 0.5444108 1719 Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 0 0 0 0 0 8 0 1 65.822 65.822 2 0.028706 19820 TMT1-7 74.533 49.679 91.81 184.68 102.51 87.311 88.836 159.5 87 181 109 87 94 152 1 1 1 1 1 1 9945.7 6354 1719 6297 10001 13015 13015 1 FYFENLLSK Unmodified 1159.5914 0.59136099 1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 0 0 0 9 0 1 76.07 76.07 3 0.0026556 22037 TMT1-8 80.231 48.8 54.065 73.215 48.55 44.145 56.023 76.219 51 73 51 44 58 73 1 1 1 1 1 1 8919.1 6355 1718 6298 10002 13016 13016 1 FYFHDGVR Unmodified 1039.4876 0.48756462 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 7 0 1 43.562 43.562 3 0.011095 10940 TMT1-6 72.547 51.808 45.592 50.366 49.296 59.134 70.285 67.284 43 51 51 58 72 65 1 1 1 1 1 1 6686.6 6356 65 6299 10003 13017 13017 1 FYFPNWFGLEK Unmodified 1446.6972 0.69722304 1265 P52333;P52333-2;P52333-4 JAK3 Tyrosine-protein kinase JAK3 yes no 0 0 0 0 0 9 0 2 86.795 86.795 2;3 0.0013271 26180 TMT1-8 73.499 51.627 30.76 28.177 36.155 21.363 28.062 37.575 29 29 36 22 29 36 1 1 1 1 1 1 2966.5 6357 1265 6300 10004;10005 13018;13019 13018 2 FYFVGDEDLLEIIGNSK Unmodified 1957.9673 0.96730947 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 92.624 92.624 3 5.677E-10 30051 TMT1-6 110.55 91.225 62.673 48.949 65.155 43.149 56.362 67.682 59 51 65 44 58 65 2 2 2 2 2 2 7760.8 6358 1763 6301 10006 13020;13021 13021 2 FYGAEIVSALEYLHSR Unmodified 1853.9312 0.93119874 978 P31751-2;P31751 AKT2 RAC-beta serine/threonine-protein kinase yes no 0 0 0 0 0 8 0 1 78.35 78.35 3 1.6293E-08 24721 TMT1-7 105.31 80.52 30.689 44.17 34.508 36.787 26.803 53.601 29 44 36 36 29 51 1 1 1 1 1 1 7985 6359 978 6302 10007 13022 13022 1 FYGDEEK Unmodified 886.37086 0.37086311 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 4 0 1 43.502 43.502 2 0.033063 11678 TMT1-3 89.298 21.541 107.94 137.27 136.8 83.812 166.2 134.9 102 138 138 87 167 131 1 1 1 1 1 1 16067 6360 918 6303 10008 13023 13023 1 FYGDEEKDK Unmodified 1129.4928 0.49276916 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 4.5 0.5 1 1 41.22 41.22 3 0.00057084 10785 TMT1-3 116.3 79.458 4330.5 6050.8 4817.8 3999.4 5241.6 5370.2 4091 6037 4973 4012 5363 5178 4 4 4 4 4 4 370110 6361 918 6304 10009;10010 13024;13025;13026;13027 13024 4 FYGEPVIK Unmodified 951.50657 0.50656873 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 7 0 1 56.14 56.14 2 0.011515 15923 TMT1-6 97.798 42.122 122.83 169.32 132.29 140.2 146.33 181.31 116 169 138 138 152 174 1 1 1 1 1 1 12504 6362 2206 6305 10011 13028 13028 1 FYGPAGPYGIFAGR Unmodified 1471.7248 0.72483478 132 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 0 0 9 0 1 69.111 69.111 2 2.8823E-30 19294 TMT1-8 197.66 159.3 46.757 50.549 33.652 45.595 26.142 61.082 44 51 36 44 29 58 1 1 1 1 1 1 11075 6363 132 6306 10012 13029 13029 1 FYGPEGPYGVFAGR Unmodified 1515.7147 0.71466402 58 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 0 0 0 0 0 7 0 1 65.63 65.63 2 1.6865E-09 19667 TMT1-6 117.99 91.867 76.646 146.46 158.78 116.06 125.15 190.44 73 145 160 117 131 182 2 2 2 2 2 2 29012 6364 58 6307 10013 13030;13031 13030 2 FYGPQGTPYEGGVWK Unmodified 1684.7886 0.78855725 1421 P62256-2;P62256 UBE2H Ubiquitin-conjugating enzyme E2 H yes no 0 0 0 0 0 7.5 0.5 1 1 63.496 63.496 3 0.0063691 18905 TMT1-6 40.237 22.32 138.69 189.17 153.83 162.53 168.9 194.52 131 189 160 160 175 187 1 1 1 1 1 1 10494 6365 1421 6308 10014;10015 13032;13033 13032 2 FYGVTVFK Unmodified 959.51165 0.5116541 1925 Q32P28-4;Q32P28;Q32P28-3 LEPRE1 Prolyl 3-hydroxylase 1 yes no 0 0 0 0 0 9 0 1 65.343 65.343 2 0.0047666 17836 TMT1-8 111.82 69.836 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6366 1925 6309 10016 13034 13034 1 FYHDWNDKEIEVLNK Unmodified 1948.9319 0.93192702 2745 Q9NTK5;Q9NTK5-2;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 1 6 0 1 59.365 59.365 4 5.8325E-15 17811 TMT1-5 134.9 109.31 176.67 429.9 239.5 339.69 357.6 249.9 168 419 260 330 365 244 1 1 1 1 1 1 19905 6367 2745 6310 10017 13035 13035 1 FYIDPYK Unmodified 944.46437 0.46436956 2781 Q9NY12-2;Q9NY12 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 0 0 7 0 1 60.981 60.981 2 0.023497 17867 TMT1-6 94.887 73.38 108.15 145.41 94.053 158.05 131.91 150.81 102 145 102 152 138 145 1 1 1 1 1 1 10601 6368 2781 6311 10018 13036 13036 1 FYLAELALALDHLHSLGIIYR Unmodified 2427.3315 0.3314519 1256 P51812;Q15349 RPS6KA3;RPS6KA2 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2 no no 0 0 0 0 0 9 0 1 90.655 90.655 4 0.01554 27763 TMT1-8 36.253 18.115 16.025 6.26 6.4292 15.454 29.637 30.068 15 7 7 15 30 29 1 1 1 1 1 1 2504.5 6369 1256 6312 10019 13037 13037 1 FYLFLSK Unmodified 916.50584 0.50584045 430 P02549-2;P02549 SPTA1 Spectrin alpha chain, erythrocytic 1 yes no 0 0 0 0 0 9 0 1 74.773 74.773 2 0.037654 21524 TMT1-8 85.265 53.893 37.935 81.775 47.103 66.918 70.168 90.74 36 80 51 65 73 87 1 1 1 1 1 1 4998 6370 430 6313 10020 13038 13038 1 FYNAGLAYCHSK Unmodified 1429.6449 0.6448699 2246 Q8TC12;Q8TC12-2 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 8 0 1 46.607 46.607 3 6.8182E-09 12255 TMT1-7 135.26 95.602 191.46 297.45 210.68 191.92 169.8 250.99 181 295 220 190 179 240 1 1 1 1 1 1 31640 6371 2246 6314 10021 13039 13039 1 FYNELTEILVR Unmodified 1395.7398 0.73981614 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6.67 0.471 1 2 78.806 78.806 2;3 8.7246E-06 24813 TMT1-6 126.19 94.259 168.23 215.92 216.78 118.71 207.48 226.47 159 217 218 124 211 218 3 3 3 3 3 3 52359 6372 2267 6315 10022;10023;10024 13040;13041;13042 13041 3 FYPAEWQDFLDSLQK Unmodified 1885.8887 0.88866522 2993 Q9Y3C1 NOP16 Nucleolar protein 16 yes yes 0 0 0 0 0 8 0 1 91.231 91.231 3 2.8655E-05 29504 TMT1-7 89.648 69.809 15.822 29.439 20.954 22.541 13.606 30.526 15 29 22 22 15 29 1 1 1 1 1 1 2875.9 6373 2993 6316 10025 13043 13043 1 FYPEDVAEELIQDITQK Unmodified 2036.9943 0.99425251 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 4.5 0.5 1 1 100.34 100.34 3 1.5366E-26 33024 TMT1-4 159.34 132.91 54.025 67.706 59.992 61.889 64.242 56.797 51 68 62 61 66 55 4 4 4 4 4 4 10674 6374 720 6317 10026;10027 13044;13045;13046;13047 13046 4 FYPEDVSEELIQDITQR Unmodified 2080.9953 0.99531514 894 P26038 MSN Moesin yes yes 0 0 0 0 0 3.57 1.18 1 1 4 1 87.03 87.03 3 1.0503E-102 28698 TMT1-3 224.67 190.48 106.99 157.11 99.235 98.979 101.7 134.81 101 156 105 97 106 129 5 5 5 4 5 4 30833 6375 894 6318 10028;10029;10030;10031;10032;10033;10034 13048;13049;13050;13051;13052;13053;13054;13055;13056 13052 9 FYPPDPAQLTEDITR Unmodified 1761.8574 0.85736509 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171;P11171-7;Q9H4G0-4;Q9H4G0-3;Q9H4G0-2;Q9H4G0 EPB41;EPB41L1 Protein 4.1;Band 4.1-like protein 1 yes no 0 0 0 0 0 5 0 1 73.823 73.823 3 0.033499 23382 TMT1-4 41.412 19.855 38.002 65.771 49.458 35.62 41.5 84.096 36 65 51 36 44 80 1 1 1 1 1 1 10115 6376 643 6319 10035 13057 13057 1 FYQAEMEELDFISAVEK Unmodified 2047.9449 0.94485947 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 5 0 1 85.819 85.819 3 0.0014427 28083 TMT1-4 61.477 44.399 68.861 94.225 68.657 72.871 92.138 82.651 65 94 72 72 94 80 2 2 2 2 2 2 13276 6377 1014 6320 10036 13058;13059 13059 2 FYQDLKDR Unmodified 1083.5349 0.53490874 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 6 0 1 45.368 45.368 3 0.007332 12293 TMT1-5 88.181 55.766 193.13 236.43 162.61 114.21 153.33 255.73 182 237 169 116 160 244 1 1 1 1 1 1 17145 6378 1313 6321 10037 13060 13060 1 FYQEIFESPFLTETGEYYK Unmodified 2390.0994 0.099445858 1729 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 0 6 0 1 87.168 87.168 3 0.0051016 28713 TMT1-5 37.884 22.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6379 1729 6322 10038 13061 13061 1 FYSFLVLK Unmodified 1015.5743 0.57425436 212 O60216;Q9H4I0 RAD21;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 0 0 0 0 0 9 0 1 77.555 77.555 2 0.0072884 22612 TMT1-8 113.5 48.439 68.921 110.58 44.81 76.097 54.297 83.731 65 109 51 73 58 80 1 1 1 1 1 1 7567.1 6380 212 6323 10039 13062 13062 1 FYSVNVDYSK Unmodified 1220.5714 0.57135383 73 O00483 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 0 0 0 0 0 7 0 1 57.744 57.744 2 5.3273E-05 16470 TMT1-6 145.89 78.129 191.01 338.28 252.46 146.35 252.22 257.17 181 334 259 152 256 248 1 1 1 1 1 1 207910 6381 73 6324 10040 13063 13063 1 FYTACVVEAFAYLHSK Unmodified 1904.9131 0.91310583 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 9 0 1 76.214 76.214 3 5.7265E-06 22131 TMT1-8 77.324 52.005 53.925 72.825 72.436 42.852 49.046 67.89 51 73 73 44 51 65 1 1 1 1 1 1 6375.6 6382 1742 6325 10041 13064 13064 1 FYTAEVVLALDAIHSMGLIHR Unmodified 2355.2409 0.24092233 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 9 0 1 87.783 87.783 4 0.0017442 26550 TMT1-8 46.353 23.55 46.525 49.903 73.193 57.556 78.44 75.58 44 51 73 58 80 73 2 2 2 2 2 2 5729.6 6383 251 6326 10042 13065;13066 13065 2 FYTDPSYFFDLWK Unmodified 1727.7872 0.78716026 3064 Q9Y6W5;Q9Y6W5-2;Q9UPY6-2;Q9UPY6 WASF2;WASF3 Wiskott-Aldrich syndrome protein family member 2;Wiskott-Aldrich syndrome protein family member 3 yes no 0 0 0 0 0 9 0 2 94.73 94.73 3 3.5996E-11 29157 TMT1-8 113.65 87.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6384 3064 6327 10043;10044 13067;13068 13067 2 FYTDPVEAVK Unmodified 1167.5812 0.58119023 1326 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 59.601 59.601 2;3 0.0012976 17885 TMT1-5 60.518 35.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6385 1326 6328 10045;10046 13069;13070 13070 2 FYTEDGNWDLVGNNTPIFFIR Unmodified 2517.1965 0.19647456 457 P04040 CAT Catalase yes yes 0 0 0 0 0 7.5 0.5 1 1 89.233 89.233 3 1.3017E-10 28891 TMT1-7 99.86 95.784 69.81 117.55 69.72 66.077 101.32 98.379 66 116 74 66 103 95 4 4 4 4 4 4 41027 6386 457 6329 10047;10048 13071;13072;13073;13074 13074 4 FYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQK Unmodified 4026.9945 0.99447428 457 P04040 CAT Catalase yes yes 0 0 0 0 1 9 0 1 89.795 89.795 4 0.039465 27364 TMT1-8 31.056 16.239 23.328 21.356 28.66 29.612 20.061 46.332 22 22 29 29 22 44 1 1 1 1 1 1 4790.3 6387 457 6330 10049 13075 13075 1 FYTEDSPGLK Unmodified 1155.5448 0.54480473 1354 P60468 SEC61B Protein transport protein Sec61 subunit beta yes yes 0 0 0 0 0 5 0 1 53.475 53.475 2 0.00047092 15397 TMT1-4 116.3 91.088 53.896 80.299 70.992 65.207 85.418 75.381 51 80 73 65 87 73 1 1 1 1 1 1 9919.3 6388 1354 6331 10050 13076 13076 1 FYTLIPHDFGMK Unmodified 1467.7221 0.72205759 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 1 69.668 69.668 3 5.9503E-06 19540 TMT1-8 105.46 58.854 115.41 176.58 110.18 93.299 211.03 157.08 109 175 116 95 211 153 2 2 2 2 2 2 10657 6389 606 6332 10051 13077;13078 13077 2 FYVEACDDGADDVLTIDR Unmodified 2072.8997 0.89970019 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 0 2.5 0.5 1 1 70.483 70.483 3 3.6356E-19 23232 TMT1-2 114.28 95.24 16.023 6.2539 6.8004 7.1292 6.1952 23.275 15 7 7 7 7 22 1 1 1 1 1 1 3947 6390 2744 6333 10052;10053 13079;13080 13080 2 FYVEDLK Unmodified 912.45928 0.45928418 273 O75400-2;O75400-3;O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 0 6 0 1 59.849 59.849 2 0.023785 18020 TMT1-5 94.662 44.622 122.79 174.61 134.11 92.364 126.79 174.4 116 174 138 94 131 167 1 1 1 1 1 1 10560 6391 273 6334 10054 13081 13081 1 FYVHNDIFR Unmodified 1209.5931 0.59309232 1689 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 0 8 0 1 52.277 52.277 3 0.00036163 14472 TMT1-7 111.46 89.462 68.976 79.435 61.872 75.069 54.894 67.724 65 80 65 73 58 65 1 1 1 1 1 1 19318 6392 1689 6335 10055 13082 13082 1 FYVPPTQEDGVDPVEAFAQNVLSK Unmodified 2649.2962 0.29624819 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 7 0 2 90.098 90.098 3;4 2.0793E-09 29166 TMT1-6 81.312 77.666 31.712 43.956 43.152 37.228 34.112 53.393 30 44 44 37 36 51 2 2 2 2 2 2 9228.6 6393 1627 6336 10056;10057 13083;13084 13084 2 FYVVMWK Oxidation (M) 987.48881 0.48881017 554;32 CON__Q28194;P49746-2;P49746;P07996;P07996-2;P35442 THBS3;THBS1;THBS2 Thrombospondin-3;Thrombospondin-1;Thrombospondin-2 no no 0 0 1 0 0 9 0 1 66.497 66.497 2 0.012261 18273 TMT1-8 109.94 65.548 252.38 217.93 138.91 275.83 352.68 295.88 237 223 153 266 359 287 1 1 1 1 1 1 33535 + 6394 32;554 6337 10058 13085 13085 8 1 FYVVMWK Unmodified 971.4939 0.49389555 554;32 CON__Q28194;P49746-2;P49746;P07996;P07996-2;P35442 THBS3;THBS1;THBS2 Thrombospondin-3;Thrombospondin-1;Thrombospondin-2 no no 0 0 0 0 0 9 0 1 72.8 72.8 2 0.0085552 20732 TMT1-8 142.42 90.426 1062.8 1534.3 1503.5 1588.7 1712.6 2131.1 1006 1533 1545 1565 1777 2045 2 2 2 2 2 2 358670 + 6395 32;554 6337 10059 13086;13087 13086 2 FYYIYNEK Unmodified 1138.5335 0.53351176 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 8 0 1 60.338 60.338 3 0.0064404 17672 TMT1-7 79.469 58.516 130.37 150.54 143.43 84.559 105.44 136.64 123 152 145 87 109 131 1 1 1 1 1 1 7111.6 6396 409 6338 10060 13088 13088 1 FYYQHNDR Unmodified 1141.4941 0.49410656 3065 Q9Y6X5 ENPP4 Bis(5'-adenosyl)-triphosphatase ENPP4 yes yes 0 0 0 0 0 5 0 1 32.542 32.542 3 0.0062383 7064 TMT1-4 80.219 66.627 54.18 57.346 42.638 28.206 50.489 45.463 51 58 44 29 51 44 1 1 1 1 1 1 2658.5 6397 3065 6339 10061 13089 13089 1 GAAACDLVQR Unmodified 1059.5131 0.51312744 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 4 0 1 36.645 36.645 2 0.000291 8971 TMT1-3 124.74 84.475 77.509 71.149 77.587 96.829 68.536 98.248 73 73 80 94 73 94 1 1 1 1 1 1 12385 6398 2157 6340 10062 13090 13090 1 GAAAHPDSEEQQQR Unmodified 1522.676 0.67604668 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 2.4 1.02 1 2 1 1 19.049 19.049 3 7.7001E-54 3349 TMT1-1 223.03 211.32 179.37 207.55 171.66 145.95 165.52 175.63 169 208 177 145 170 169 11 10 12 10 11 11 114500 6399 3010 6341 10063;10064;10065;10066;10067 13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103 13092 13 GAAATTTTTEHR Unmodified 1215.5844 0.58437813 2647 Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7 WNK1 Serine/threonine-protein kinase WNK1 yes no 0 0 0 0 0 3 0 1 18.947 18.947 3 0.01271 3290 TMT1-2 55.98 19.286 16.02 9.484 4.5329 5.1022 4.9272 1.9914 15 10 5 5 5 2 1 1 1 1 1 1 377.97 6400 2647 6342 10068 13104 13104 1 GAAGALLVYDITR Unmodified 1318.7245 0.72450043 1370 P61019;P61019-2;Q8WUD1;Q8WUD1-2 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B yes no 0 0 0 0 0 7 0 1 66.087 66.087 2 1.1434E-12 19844 TMT1-6 160.36 109.88 153.17 216.84 222.32 165.01 226.82 240.84 145 217 225 167 232 232 2 2 2 2 2 2 41060 6401 1370 6343 10069 13105;13106 13105 2 GAAGALLVYDITSR Unmodified 1405.7565 0.75652884 1369;809 P61018;P61018-2;P20338 RAB4B;RAB4A Ras-related protein Rab-4B;Ras-related protein Rab-4A no no 0 0 0 0 0 7 0 2 67.016 67.016 2;3 2.036E-42 20237 TMT1-6 205.56 168.37 115.51 175.78 93.511 104.21 90.425 121.08 109 174 101 102 95 116 2 2 2 2 2 2 30069 6402 1369;809 6344 10070;10071 13107;13108 13107 2 GAAGALMVYDITR Unmodified 1336.6809 0.68092105 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 7 0 1 62.07 62.07 3 9.4112E-05 18319 TMT1-6 92.925 83.27 77.449 62.349 95.039 56.963 40.775 76.654 73 65 94 58 44 73 1 1 1 1 1 1 14001 6403 1378 6345 10072 13109 13109 1 GAAGEQLSFAAGLVYSLSLLQATLHR Unmodified 2672.4286 0.42859976 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 9 0 1 98.804 98.804 3 8.7187E-13 30546 TMT1-8 74.123 63.58 7.511 0 0 16.395 0 0 7 0 0 15 0 0 1 0 0 1 0 0 2999.5 6404 1762 6346 10073 13110 13110 1 GAAGRPLELSDFR Unmodified 1387.7208 0.72081203 1090 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 6 0 1 46.287 46.287 3 7.1143E-05 12662 TMT1-5 100.19 74.801 237.96 459.52 193.76 226.71 291.27 413.82 225 450 215 223 302 396 1 1 1 1 1 1 55471 6405 1090 6347 10074 13111 13111 1 GAAIPAK Unmodified 626.37516 0.37516062 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 37.759 37.759 2 0.03457 8704 TMT1-6 88.627 24.064 99.559 107.12 128.2 148.5 124.76 158.47 94 109 131 145 131 152 1 1 1 1 1 1 13072 6406 786 6348 10075 13112 13112 1 GAALITAVGVR Unmodified 1026.6186 0.61857879 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 8.5 0.5 1 1 52.901 52.901 2 1.1103E-10 12904 TMT1-8 156.62 108.58 435.45 497.28 511.7 448.82 433.72 659.2 411 503 521 446 456 630 3 3 3 3 3 3 85206 6407 787 6349 10076;10077 13113;13114;13115 13115 3 GAAPNVVYTYTGK Unmodified 1339.6772 0.67721588 1896 Q16630-3;Q16630;Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 0 7 0 1 52.399 52.399 3 0.006374 14474 TMT1-6 61.042 39.169 343.38 444.81 520.67 377.03 561.39 387.99 325 448 523 383 566 379 1 1 1 1 1 1 12813 6408 1896 6350 10078 13116 13116 1 GAAPYVQAFDSLLAGPVAEYLK Unmodified 2279.1838 0.18378461 1556 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes yes 0 0 0 0 0 7.5 0.5 2 2 95.933 95.933 3;4 7.089E-23 31296 TMT1-7 122.19 106.94 155.77 198.94 160.51 167.52 173.14 216.79 147 198 167 165 180 208 7 6 7 7 7 7 58868 6409 1556 6351 10079;10080;10081;10082 13117;13118;13119;13120;13121;13122;13123 13123 7 GAASGVVGELAR Unmodified 1085.5829 0.58292157 1978 Q5T5C0-3;Q5T5C0-2;Q5T5C0 STXBP5 Syntaxin-binding protein 5 yes no 0 0 0 0 0 5 0 1 45.653 45.653 2 5.4457E-10 12321 TMT1-4 155.53 82.654 61.259 110.67 70.146 42.457 77.302 128.91 58 109 73 44 80 123 1 1 1 1 1 1 6995 6410 1978 6352 10083 13124 13124 1 GAAVDGGK Unmodified 673.3395 0.3395034 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 4 0 1 30.183 30.183 2 0.022303 6430 TMT1-3 87.323 26.361 61.623 32.898 74.811 42.43 63.98 60.002 58 36 73 44 65 58 1 1 1 1 1 1 4264.7 6411 1244 6353 10084 13125 13125 1 GACAGSEDAVK Unmodified 1063.4604 0.46042317 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 2.5 0.5 1 1 33.108 33.108 3 4.8147E-05 8513 TMT1-2 105.98 98.376 138.43 196 191.79 175.73 160.65 173.44 131 196 196 174 167 167 2 2 2 2 2 2 6957 6412 1737 6354 10085;10086 13126;13127 13127 2 GACASHVSTMASFLK Unmodified 1565.733 0.73303298 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 0 9 0 1 50.483 50.483 3 9.8402E-06 12000 TMT1-8 87.083 61.866 91.939 138.63 119.8 101.14 170.61 196.61 87 138 123 102 174 189 1 1 1 1 1 1 15253 6413 2887 6355 10087 13128 13128 1 GACHGQTGMFPR Unmodified 1317.5707 0.5706591 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 7 0 1 31.265 31.265 3 0.04348 6185 TMT1-6 43.604 34.875 30.622 27.793 59.714 51.673 27.182 22.676 29 29 59 51 29 22 1 1 1 1 1 1 1608.7 6414 1464 6356 10088 13129 13129 1 GACILNMLR Unmodified 1046.5365 0.53650542 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 62.17 62.17 2 0.0029203 16589 TMT1-8 107.32 70.922 130.78 151.69 72.84 88.873 99.779 82.433 123 152 80 87 102 80 1 1 1 1 1 1 8880.4 6415 2791 6357 10089 13130 13130 1 GADCCVLVFDVTAPNTFK Unmodified 2012.9336 0.93358328 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 6.67 0.471 1 2 73.626 73.626 3;4 4.0022E-08 23459 TMT1-5 78.021 62.931 115.43 151.81 127.9 93.286 97.45 144.33 109 152 131 94 102 138 2 2 2 2 2 2 56465 6416 1237 6358 10090;10091;10092 13131;13132;13133 13131 3 GADFLVTEVENGGSLGSK Unmodified 1778.8687 0.86865806 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5 0 2 69.468 69.468 2;3 2.3943E-26 21607 TMT1-4 161.21 135.23 245.37 348.64 304.13 253.75 305.68 292.96 232 348 312 254 313 283 3 3 3 3 3 3 131770 6417 706;707 6359 10093;10094 13134;13135;13136 13136 3 GADINAPDK Unmodified 899.43486 0.43486035 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 0 4 0 1 38.118 38.118 3 0.0026046 9556 TMT1-3 84.213 27.649 114.84 221.41 167.61 152.64 186.62 118.33 109 218 174 152 189 116 1 1 1 1 1 1 11770 6418 1347 6360 10095 13137 13137 1 GADKVNTFSALLLEPYKPPSAQ Unmodified 2345.2267 0.22671206 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 2 9 0 1 72.185 72.185 3 0.0021433 20562 TMT1-8 52.909 36.61 23.378 29.051 13.693 15.174 21.531 22.838 22 29 15 15 22 22 1 1 1 1 1 1 5393.9 6419 193 6361 10096 13138 13138 1 GADVWFK Unmodified 821.40719 0.40718903 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 7.33 0.471 2 1 57.689 57.689 2;3 0.0099031 16612 TMT1-6 110.35 55.798 878.5 1471.7 964.5 1114.7 1657.3 1236.2 831 1454 1023 1101 1674 1204 3 3 3 3 3 3 321690 6420 486 6362 10097;10098;10099 13139;13140;13141 13140 3 GAEAANVTGPGGVPVQGSK Unmodified 1694.8588 0.85876208 1483 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 0 0 5 0 1 44.686 44.686 3 1.4898E-17 11916 TMT1-4 122.61 98.053 68.18 171.12 117.93 102.05 127.96 127.47 65 167 123 102 131 123 1 1 1 1 1 1 20794 6421 1483 6363 10100 13142 13142 1 GAEADQIIEYLK Unmodified 1348.6874 0.68744622 1653 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 0 4.5 0.5 1 1 69.893 69.893 3 2.712E-05 21745 TMT1-4 103.75 98.028 116.31 213.8 107.58 101.32 141.59 157.99 110 210 116 101 145 152 2 2 2 2 2 2 21089 6422 1653 6364 10101;10102 13143;13144 13144 2 GAEEMETVIPVDVMR Unmodified 1674.7957 0.79569281 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 2.5 0.5 1 1 67.574 67.574 3 2.9271E-17 22133 TMT1-2 145.61 128.93 30.58 66.532 33.861 21.22 42.968 60.602 29 65 36 22 44 58 1 1 1 1 1 1 27006 6423 2468 6365 10103;10104 13145;13146 13146 2 GAEEMETVIPVDVMR Oxidation (M) 1690.7906 0.79060744 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 1 0 0 3 0 1 60.351 60.351 3 0.04514 19347 TMT1-2 49.188 26.331 23.3 36.39 20.516 22.153 35.612 29.898 22 36 22 22 36 29 1 1 1 1 1 1 5737.1 6424 2468 6365 10105 13147 13147 296 1 GAEIEYAMAYSK Unmodified 1331.6068 0.60675306 2347 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 0 0 0 5 0 1 58.183 58.183 3 0.00068667 17140 TMT1-4 80.69 62.675 92.245 100.63 100.66 71.765 107.64 89.671 87 102 102 73 109 87 1 1 1 1 1 1 6254.3 6425 2347 6366 10106 13148 13148 1 GAEILEVLHSLPAVR Unmodified 1602.9093 0.90934108 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 8 0 1 72.597 72.597 3 2.1851E-16 22485 TMT1-7 141.88 96.281 38.039 58.319 49.547 43.641 79.63 59.556 36 58 51 44 80 58 1 1 1 1 1 1 13255 6426 1810 6367 10107 13149 13149 1 GAENFDKFFTR Unmodified 1330.6306 0.63060004 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 1 7 0 1 55.072 55.072 3 0.031452 15545 TMT1-6 54.199 35.366 77.257 124.41 74.749 88.829 96.079 190.2 73 123 80 87 102 181 1 1 1 1 1 1 8279 6427 757 6368 10108 13150 13150 1 GAESEWTWHGETEGK Unmodified 1702.7223 0.72232817 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 4 0 1 46.288 46.288 3 8.2987E-06 12822 TMT1-3 95.854 69.706 68.46 109.3 123.42 61.967 91.577 113.58 65 109 123 65 94 109 1 1 1 1 1 1 8486.2 6428 1633 6369 10109 13151 13151 1 GAESLEAALTHNAEVPR Unmodified 1763.8802 0.8802258 1815 Q15027 ACAP1 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 53.783 53.783 3 1.9049E-07 15780 TMT1-3 95.954 67.164 114.61 247.73 184.78 144.56 154.65 237.57 109 243 191 145 162 227 1 1 1 1 1 1 18117 6429 1815 6370 10110 13152 13152 1 GAFCDLVWSDPEDVDTWAISPR Unmodified 2535.1376 0.13763905 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 0 5.5 0.5 1 1 84.467 84.467 3 2.1969E-09 27454 TMT1-4 88.036 80.414 46.768 66.089 58.717 20.653 42.738 75.532 44 66 59 22 44 72 2 3 3 2 2 3 16374 6430 86 6371 10111;10112 13153;13154;13155 13153 3 GAFGEVQLVR Unmodified 1074.5822 0.58219329 251;1708 O75116;Q13464 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 no no 0 0 0 0 0 6 0 1 53.27 53.27 2 0.00048569 15422 TMT1-5 115.86 61.453 145.93 198.68 192.35 207.18 172.11 224.28 138 199 198 203 181 215 1 1 1 1 1 1 48874 6431 251;1708 6372 10113 13156 13156 1 GAFGKPQGTVAR Unmodified 1187.6411 0.64110515 912 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 0 1 9 0 1 35.944 35.944 3 0.0043073 6756 TMT1-8 61.932 24.957 274.42 371.71 270.75 264.3 315.43 329.99 259 371 283 262 324 318 1 1 1 1 1 1 20631 6432 912 6373 10114 13157 13157 1 GAFGVGQEQIDAFLK Unmodified 1578.8042 0.80420731 10 A5YKK6-2;A5YKK6;A5YKK6-3;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 0 7 0 1 73.304 73.304 3 0.005838 22772 TMT1-6 54.898 33.647 30.678 35.504 43.722 35.947 42.291 60.621 29 36 44 36 44 58 1 1 1 1 1 1 4813.7 6433 10 6374 10115 13158 13158 1 GAFNFDQETVINPETGEQIQSWYR Unmodified 2828.3042 0.30418711 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 5 0 1 75.418 75.418 3 5.0119E-05 23973 TMT1-4 50.977 43.174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6434 2782 6375 10116 13159 13159 1 GAFPVSFVHFIAD Unmodified 1405.703 0.7030367 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 8 0 1 79.359 79.359 2 0.0034464 25120 TMT1-7 57.859 39.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6435 156 6376 10117 13160 13160 1 GAGAFGYFEVTHDITK Unmodified 1711.8206 0.82058566 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6.5 0.5 1 1 61.113 61.113 3 7.4574E-16 18546 TMT1-5 132.08 103.78 497.01 912.43 633.5 500.26 625.24 709.17 471 899 659 503 643 682 3 3 3 3 3 3 133300 6436 457 6377 10118;10119 13161;13162;13163 13162 3 GAGAGHPGAGGAQPPDSPAGVR Unmodified 1882.9034 0.90342086 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 0 0 0 0 4 0 1 30.101 30.101 3 7.8533E-23 6384 TMT1-3 121.4 108.68 46.985 19.882 21.384 22.23 28.792 15.168 44 22 22 22 29 15 1 1 1 1 1 1 6060.3 6437 1740 6378 10120 13164 13164 1 GAGATLEHQQEISK Unmodified 1467.7318 0.73177065 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 4 0 1 36.104 36.104 3 2.0065E-17 8768 TMT1-3 151.66 116.98 61.049 117.64 99.457 79.49 107.54 82.211 58 116 102 80 109 80 1 1 1 1 1 1 11947 6438 3034 6379 10121 13165 13165 1 GAGAYICGEETALIESIEGK Unmodified 2066.983 0.98303589 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 4 0 1 81.254 81.254 3 9.6244E-07 26483 TMT1-3 79.311 64.156 15.829 37.015 13.258 15.062 28.865 22.628 15 36 15 15 29 22 1 1 1 1 1 1 6941.6 6439 1206 6380 10122 13166 13166 1 GAGSGELK Unmodified 717.36572 0.36571815 831;1771 P21333-2;P21333;Q14315-2;Q14315 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 0 4.75 1.48 1 1 1 1 34.802 34.802 2 0.0052491 7152 TMT1-4 119.27 50.853 3237.2 3127.4 3662 2988.8 3884.1 3211.9 3052 3202 3696 3001 3950 3117 6 6 6 6 6 6 638780 6440 831;1771 6381 10123;10124;10125;10126 13167;13168;13169;13170;13171;13172 13171 6 GAGSGELKVTVK Unmodified 1144.6452 0.64518747 831;1771 P21333-2;P21333;Q14315-2;Q14315 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 1 7 0 1 42.536 42.536 3 0.0054551 10593 TMT1-6 69.352 35.943 316.78 383.41 355.06 245.57 288.36 655.89 299 386 361 249 308 623 1 1 1 1 1 1 31577 6441 831;1771 6382 10127 13173 13173 1 GAGSYTIMVLFADQATPTSPIR Unmodified 2295.1569 0.15691793 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8.2 0.748 1 2 2 80.48 80.48 3;4 1.5873E-53 23686 TMT1-8 182.47 149.78 463.37 479.25 522.84 438.31 434.43 561.11 437 488 530 437 453 538 11 11 11 11 11 11 366180 6442 831 6383 10128;10129;10130;10131;10132 13174;13175;13176;13177;13178;13179;13180;13181;13182;13183;13184;13185 13181 12 GAGSYTIMVLFADQATPTSPIR Oxidation (M) 2311.1518 0.15183255 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 8.33 0.471 2 1 72.451 72.451 3 2.272E-20 20613 TMT1-8 118.07 83.973 61.537 80.148 49.198 43.717 76.711 114.01 58 80 52 44 79 109 2 2 2 2 2 2 9602.2 6443 831 6383 10133;10134;10135 13186;13187;13188;13189 13188 158 4 GAGTDDHTLIR Unmodified 1154.568 0.56799978 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 2.25 0.829 1 1 2 31.116 31.116 2;3 3.818E-06 7578 TMT1-1 120.06 105.5 313.57 548.96 393.86 342.23 430.99 393.85 297 542 410 342 440 381 4 4 4 4 4 4 88938 6444 578 6384 10136;10137;10138;10139 13190;13191;13192;13193;13194 13192 5 GAGTDEGCLIEILASR Unmodified 1660.809 0.80903469 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 4.5 0.5 1 1 70.859 70.859 3 1.3563E-12 22429 TMT1-3 128.71 119.3 115.39 166.79 122.72 189.33 121.29 174.56 109 166 131 182 130 167 3 3 3 3 3 3 30241 6445 598 6385 10140;10141 13195;13196;13197 13195 3 GAGTGGLGLAVEGPSEAK Unmodified 1569.7999 0.79985021 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.8 1.47 1 2 2 53.494 53.494 2;3 6.8021E-43 15374 TMT1-4 202.13 148.66 699.59 968.29 802.81 633.45 736.52 945.85 661 967 825 636 763 907 4 4 4 4 4 4 609830 6446 831 6386 10142;10143;10144;10145;10146 13198;13199;13200;13201;13202;13203 13202 6 GAGTNEDALIEILTTR Unmodified 1672.8632 0.86317875 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 4.67 0.471 1 2 74.353 74.353 2;3 9.872E-07 23590 TMT1-4 97.235 77.558 100.84 92.528 104.79 134.85 110.96 121.71 95 95 108 131 116 116 3 3 3 3 3 2 27448 6447 670 6387 10147;10148;10149 13204;13205;13206 13206 3 GAGTVFDAFPDQVAIQLNDTHPALAIPELMR Unmodified 3306.6707 0.6706973 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 7 0 1 85.284 85.284 4 0.00019455 27376 TMT1-6 47.175 36.071 15.775 29.309 28.905 14.262 21.829 15.367 15 29 29 15 22 15 1 1 1 1 1 1 7640.8 6448 515 6388 10150 13207 13207 1 GAHGIIVVYDVTDQESFNNVK Unmodified 2304.1386 0.13862533 1444 P62820 RAB1A Ras-related protein Rab-1A yes yes 0 0 0 0 0 5.5 0.5 1 1 61.296 61.296 3 3.7482E-31 18526 TMT1-5 144.08 131.42 116.04 60.673 103.29 63.857 54.86 83.715 109 66 102 65 58 80 2 2 2 2 2 2 24332 6449 1444 6389 10151;10152 13208;13209 13209 2 GAHGIIVVYDVTDQESYANVK Unmodified 2277.1277 0.12772629 2616 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 0 0 0 0 0 5.6 0.49 2 3 59.615 59.615 3;4;5 3.7795E-36 17811 TMT1-4 158.74 142.8 406.07 601.91 672.16 449.55 583.9 549.38 385 602 675 458 596 531 7 7 7 7 7 7 92208 6450 2616 6390 10153;10154;10155;10156;10157 13210;13211;13212;13213;13214;13215;13216 13212 7 GAHPSGGADDVAK Unmodified 1180.5473 0.54726434 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 4 0 1 27.373 27.373 3 0.00023325 5343 TMT1-3 67.456 44.716 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6451 1609 6391 10158 13217 13217 1 GAHSVGLMWWMLAR Unmodified 1613.7959 0.79590801 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 9 0 1 69.411 69.411 3 6.4496E-05 19486 TMT1-8 80.31 60.471 77.717 63.094 49.401 35.992 79.982 59.546 73 65 51 37 80 58 2 2 2 2 2 2 7751.1 6452 579 6392 10159 13218;13219 13219 2 GAHVTINAR Unmodified 937.50936 0.50936269 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-5 DBNL Drebrin-like protein yes no 0 0 0 0 0 7.2 1.6 1 1 1 2 25.738 25.738 2;3 0.0022578 4682 TMT1-5 86.67 50.79 214.05 250.74 240.35 169.03 188.39 257.93 202 253 244 171 196 247 6 6 6 6 6 6 37939 6453 2887 6393 10160;10161;10162;10163;10164 13220;13221;13222;13223;13224;13225 13222 6 GAHYSNEVYELAQVLR Unmodified 1847.9166 0.91661131 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 7 0 1 61.829 61.829 3 0.0038008 18199 TMT1-6 55.546 48.344 84.965 61.847 94.726 63.826 83.649 128.73 80 65 94 65 87 123 1 1 1 1 1 1 9276.9 6454 2279 6394 10165 13226 13226 1 GAIENLLAK Unmodified 927.53893 0.53893149 2937 Q9UPN9-2;Q9UPN9 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 0 0 0 5 0 1 50.157 50.157 2 0.00059318 14067 TMT1-4 90.657 4.521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6455 2937 6395 10166 13227 13227 1 GAIFCPPCYDVR Unmodified 1453.6482 0.64824072 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 7 0 1 57.417 57.417 2 0.017473 16391 TMT1-6 67.881 39.138 92.116 139.12 89.651 72.855 84.553 90.329 87 138 94 73 87 87 1 1 1 1 1 1 14463 6456 2718 6396 10167 13228 13228 1 GAIGLVPK Unmodified 753.47487 0.47487467 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 8 0 1 50.414 50.414 3 0.02494 13770 TMT1-7 59.205 45.211 241 316.34 344.8 234.8 312.47 303.42 228 318 347 239 319 293 1 1 1 1 1 1 7880.2 6457 289 6397 10168 13229 13229 1 GAILNISSGSGMLPVPLLTIYSATK Unmodified 2502.3767 0.37674711 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 0 9 0 1 92.312 92.312 4 1.6063E-08 28243 TMT1-8 71.54 51.987 15.866 29.563 13.358 22.852 21.178 22.848 15 29 15 22 22 22 1 1 1 1 1 1 3489 6458 1948 6398 10169 13230 13230 1 GAILTGPPGTGK Unmodified 1067.5975 0.597509 3020 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 0 8 0 1 48.246 48.246 2 6.6378E-07 12883 TMT1-7 119.27 82.253 54.002 56.849 73.061 50.33 56.288 60.222 51 58 73 51 58 58 1 1 1 1 1 1 7670 6459 3020 6399 10170 13231 13231 1 GAILTTMLATR Unmodified 1146.6431 0.64307898 1719 Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3;Q13554-2;Q13554-5;Q13554-8;Q13554-7;Q13554-3;Q13554-6;Q9UQM7-2;Q13554-4;Q9UQM7;Q13554 CAMK2D;CAMK2B;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha yes no 0 0 0 0 0 9 0 1 62.963 62.963 2 0.00062991 16895 TMT1-8 88.181 51.786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6460 1719 6400 10171 13232 13232 1 GAIQFVTQYQHSSGQR Unmodified 1805.8809 0.8808945 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 8 0 1 46.738 46.738 3 3.4138E-08 12336 TMT1-7 104.26 81.119 115.23 175 141.7 92.345 103.76 175.06 109 174 145 94 109 167 1 1 1 1 1 1 13432 6461 1857 6401 10172 13233 13233 1 GAISAEVYTEEDAASYVR Unmodified 1929.8956 0.89560109 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 2.67 0.471 1 2 58.802 58.802 2;3 8.9942E-15 18446 TMT1-1 127.2 111.56 95.262 123.59 115.05 57.641 109.04 98.158 90 124 116 59 110 95 4 4 4 3 4 4 32778 6462 635 6402 10173;10174;10175 13234;13235;13236;13237 13234 4 GAIYLAEEACPGISDTMVAQLVQR Unmodified 2591.2724 0.2723584 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 6 0 1 81.005 81.005 3 1.4726E-09 26324 TMT1-5 84.371 74.271 23.318 13.774 36.711 29.126 20.376 37.795 22 15 36 29 22 36 1 1 1 1 1 1 7715.9 6463 3054 6403 10176 13238 13238 1 GALAEAR Unmodified 686.37114 0.37113788 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.33 0.943 1 2 28.457 28.457 2 0.0012482 5645 TMT1-3 101.21 40.808 167.06 213.74 415.31 182.9 349.53 268.25 159 218 404 196 351 261 2 2 2 2 2 2 41965 6464 776 6404 10177;10178;10179 13239;13240;13241;13242 13241 4 GALALAQAVQR Unmodified 1096.6353 0.63529149 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 9 0 1 51.091 51.091 2 0.0082694 12182 TMT1-8 74.486 49.232 115.71 145.04 86.043 143.21 132.59 150.79 109 145 94 138 138 145 1 1 1 1 1 1 15021 6465 657 6405 10180 13243 13243 1 GALALEEK Unmodified 829.45453 0.45453316 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4 2 1 1 1 1 1 46.836 46.836 2;3 0.00045388 12608 TMT1-4 151.27 98.106 6862.1 10107 9598.1 6919.7 10329 10063 6496 10085 9748 7032 10509 9716 7 7 7 7 7 7 1249500 6466 1019 6406 10181;10182;10183;10184;10185 13244;13245;13246;13247;13248;13249;13250;13251 13248 8 GALALEEKR Unmodified 985.55564 0.55564418 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 5 0 1 38.674 38.674 3 0.0027467 9480 TMT1-4 90.629 10.39 452.06 545.1 384.15 306.66 376.72 712 426 547 400 308 397 678 1 1 1 1 1 1 58867 6467 1019 6407 10186 13252 13252 1 GALDAFSAVQDPHSR Unmodified 1569.7536 0.75356872 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 5 0 1 49.324 49.324 3 1.6505E-10 13746 TMT1-4 118.16 98.877 77.339 85.787 93.673 56.084 91.847 113.57 73 87 94 58 94 109 1 1 1 1 1 1 16602 6468 799 6408 10187 13253 13253 1 GALDSLGTFVSYLLGDAVPTVER Unmodified 2379.2322 0.23219137 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 9 0 2 108.82 108.82 3 3.8147E-22 33752 TMT1-8 107.06 90.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6469 1633 6409 10188;10189 13254;13255 13254 2 GALFGANANR Unmodified 989.50428 0.50427732 1039 P36543;P36543-2;P36543-3 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 0 8 0 1 41.248 41.248 2 2.8867E-06 10124 TMT1-7 157.21 123.04 130.87 113.09 90.02 95.24 113.63 96.961 123 116 94 94 116 94 1 1 1 1 1 1 8898 6470 1039 6410 10190 13256 13256 1 GALHDENTCNR Unmodified 1285.5469 0.54694677 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 4.17 1.95 1 2 1 1 1 21.651 21.651 3 2.2988E-32 3809 TMT1-2 208.15 175.31 316.09 362.47 337.55 278.23 234.76 330.59 298 366 345 277 244 316 13 15 15 15 11 14 120800 6471 484 6411 10191;10192;10193;10194;10195;10196 13257;13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268;13269;13270;13271 13264 15 GALIHNVSK Unmodified 937.53451 0.53451481 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 8 0 1 36.95 36.95 3 0.0038201 8412 TMT1-7 78.149 58.372 145.71 202.38 226.49 188.9 222.32 248.43 138 203 229 189 229 239 1 1 1 1 1 1 20812 6472 750 6412 10197 13272 13272 1 GALLSMDALDLTDK Unmodified 1461.7385 0.73849551 2914 Q9ULZ3;Q9ULZ3-2 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 6 0 1 75.015 75.015 3 0.00057936 24021 TMT1-5 75.589 63.423 200.84 227.85 135.25 156.18 100.82 175.14 189 229 145 152 109 167 1 1 1 1 1 1 13123 6473 2914 6413 10198 13273 13273 1 GALLVFAEHR Unmodified 1111.6138 0.61382777 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 8 0 1 52.003 52.003 3 0.00010299 14394 TMT1-7 114.5 78.985 76.497 86.504 54.211 66.647 62.061 83.509 72 87 58 65 65 80 1 1 1 1 1 1 20987 6474 2866 6414 10199 13274 13274 1 GALMSAFSPEK Unmodified 1136.5536 0.55359527 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 8 0 2 59.576 59.576 2;3 0.00014315 17437 TMT1-7 101.93 75.256 122.51 236.44 128.24 140.89 122.2 212.91 116 232 138 138 130 203 2 2 2 2 2 2 35082 6475 876 6415 10200;10201 13275;13276 13276 2 GALPLDTVTFYK Unmodified 1323.7075 0.70745338 944 P30040;P30040-2 ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 0 7.5 0.5 1 1 69.132 69.132 3 6.5772E-09 21080 TMT1-7 135.8 114.16 375.42 577.1 434.38 383.62 542.24 540.98 355 573 451 384 553 522 4 4 4 4 4 4 112670 6476 944 6416 10202;10203 13277;13278;13279;13280 13279 4 GALQNIIPASTGAAK Unmodified 1410.7831 0.78307794 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 7 2.71 1 4 1 57.486 57.486 2;3;4 6.2267E-43 16574 TMT1-7 210.44 190.45 3540.6 5582.9 3979.2 3698.5 4660 5224.7 3348 5534 4156 3681 4789 5026 11 11 11 11 11 11 2032800 6477 472 6417 10204;10205;10206;10207;10208;10209 13281;13282;13283;13284;13285;13286;13287;13288;13289;13290;13291 13289 11 GALQYLVPILTQTLTK Unmodified 1758.0291 0.029121869 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 9 0 2 92.875 92.875 3;4 1.7022E-20 28476 TMT1-8 145.69 117.72 199.92 292.2 235.63 210.64 315.52 246.84 189 291 240 211 319 240 4 4 3 4 4 4 49582 6478 1803 6418 10210;10211 13292;13293;13294;13295 13293 4 GALTGGYYDTR Unmodified 1172.5462 0.54620171 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 4 0 1 42.595 42.595 2 0.016236 11365 TMT1-3 74.424 62.377 68.722 93.836 92.481 72.963 69.89 90.748 65 94 94 73 73 87 1 1 1 1 1 1 8693.4 6479 2944 6419 10212 13296 13296 1 GALVLGSSLK Unmodified 943.57023 0.57023162 1140 P46976;P46976-2;P46976-3 GYG1 Glycogenin-1 yes no 0 0 0 0 0 9 0 1 56.235 56.235 2 1.6766E-17 14225 TMT1-8 186.76 125.98 224.95 267.75 197.2 142.16 243.28 248.9 212 269 204 145 247 240 2 2 2 2 2 2 19792 6480 1140 6420 10213 13297;13298 13297 2 GALVVVNDLGGDFK Unmodified 1402.7456 0.7456298 1250 P51659 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 0 0 0 0 0 6 0 1 70.172 70.172 3 6.8459E-15 22148 TMT1-5 136.99 103.1 215.26 229.45 236.12 171.3 255.8 271.99 203 233 239 174 261 262 2 2 2 2 2 2 33012 6481 1250 6421 10214 13299;13300 13300 2 GALWILGEYCSTK Unmodified 1496.7334 0.73335055 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 9 0 2 73.772 73.772 2;3 8.5312E-05 21171 TMT1-8 92.19 69.992 84.776 101.26 93.076 72.09 114.4 105.47 80 102 95 73 116 102 2 2 2 2 2 2 10743 6482 1286 6422 10215;10216 13301;13302 13302 2 GAMGIMLVYDITNEK Unmodified 1653.8106 0.8106146 1366;2333 P61006;P61006-2;Q92930 RAB8A;RAB8B Ras-related protein Rab-8A;Ras-related protein Rab-8B no no 0 0 0 0 0 7 0 1 80.875 80.875 3 6.8473E-05 25609 TMT1-6 84.468 55.492 77.166 124.16 90.276 80.659 74.483 159.91 73 123 94 80 80 152 2 2 2 2 2 2 11527 6483 1366;2333 6423 10217 13303;13304 13303 2 GAMSVDSITDLDDNQSR Unmodified 1822.8003 0.8003205 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 2 0 1 57.676 57.676 3 3.2702E-05 17945 TMT1-1 59.502 41.364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6484 161 6424 10218 13305 13305 1 GANIQLLDLPGIIEGAAQGK Unmodified 1977.0895 0.089490294 1309 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 0 0 7 0 2 86.048 86.048 3;4 0.00031522 27646 TMT1-6 58.073 44.661 53.975 65.409 70.332 75.767 49.093 52.965 51 66 72 74 52 51 2 2 2 2 2 2 7906.5 6485 1309 6425 10219;10220 13306;13307 13307 2 GANPVEIR Unmodified 854.46102 0.46101552 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 35.496 35.496 2 0.0022128 8497 TMT1-3 137.9 45.438 246.12 416.74 300.8 333.76 129.81 464.27 233 412 316 324 154 439 2 2 2 2 2 2 90615 6486 638 6426 10221;10222 13308;13309 13309 2 GANQWIK Unmodified 815.42899 0.42898711 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 8 0 1 45.29 45.29 2 0.0024546 11712 TMT1-7 141.98 64.236 177.24 186.3 170.11 136.57 219.5 248.51 167 189 174 138 224 239 1 1 1 1 1 1 16477 6487 566 6427 10223 13310 13310 1 GANTHLSTFSFTK Unmodified 1409.6939 0.69392858 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 9 0 1 48.434 48.434 3 3.7508E-06 11166 TMT1-8 98.942 74.956 92.382 92.373 84.538 80.547 98.586 128.3 87 94 87 80 102 123 1 1 1 1 1 1 9967.4 6488 3 6428 10224 13311 13311 1 GANVIAGVWLEEAGQK Unmodified 1640.8522 0.85222014 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6.5 0.5 1 1 71.304 71.304 2;3 1.9937E-11 22542 TMT1-5 117.08 96.7 146.82 143.96 88.494 110.4 125.96 174.43 138 146 95 108 131 167 2 2 2 2 2 2 18496 6489 1833 6429 10225;10226 13312;13313 13312 2 GAPAAATAPAPTAHK Unmodified 1330.6993 0.69934831 2295 Q92522 H1FX Histone H1x yes yes 0 0 0 0 0 6 0 1 32.728 32.728 3 3.756E-08 7293 TMT1-5 113.76 80.484 54.252 42.436 43.187 35.959 43.353 29.677 51 44 44 36 44 29 1 1 1 1 1 1 8316.2 6490 2295 6430 10227 13314 13314 1 GAPAGAGSGTQTGTGTGTGAR Unmodified 1731.8136 0.8136028 2500 Q99952-2;Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 yes no 0 0 0 0 0 4 0 1 26.729 26.729 3 6.3444E-09 5086 TMT1-3 91.589 64.931 15.974 6.1184 15.104 15.217 14.749 7.0411 15 7 15 15 15 7 1 1 1 1 1 1 2041.1 6491 2500 6431 10228 13315 13315 1 GAPAPHCEMSR Unmodified 1211.5176 0.51756089 152 O15533-2;O15533;O15533-3 TAPBP Tapasin yes no 0 0 0 0 0 3.5 0.5 1 1 24.497 24.497 3 0.023359 4268 TMT1-3 51.998 50.403 50.144 22.734 29.005 41.257 39.031 26.602 47 25 30 40 40 26 2 2 2 2 2 2 3469.2 6492 152 6432 10229;10230 13316;13317 13317 2 GAPAVQQNIPSTLLQDHENQR Unmodified 2315.1618 0.16182039 1103 P42768 WAS Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 0 5 0 1 49.758 49.758 3 7.9442E-14 13917 TMT1-4 107.63 103.01 15.987 14.789 5.561 23.459 13.564 30.527 15 15 7 22 15 29 1 1 1 1 1 1 8979.2 6493 1103 6433 10231 13318 13318 1 GAPAVYSEK Unmodified 920.46035 0.46034682 2306 Q92614-2;Q92614-3;Q92614-4;Q92614 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 5 0 1 39.135 39.135 2 2.2971E-05 9704 TMT1-4 126.41 84.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6494 2306 6434 10232 13319 13319 1 GAPCSDAAGR Unmodified 960.40833 0.40832802 1553 Q01459 CTBS Di-N-acetylchitobiase yes yes 0 0 0 0 0 2 0 1 23.303 23.303 2 0.0016628 4385 TMT1-1 71.501 46.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6495 1553 6435 10233 13320 13320 1 GAPEGVIDR Unmodified 912.46649 0.46649483 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 2.5 0.5 1 1 36.03 36.03 2 0.0023543 9425 TMT1-1 104.01 52.159 238.39 316.1 242.06 234.33 314.38 339.61 225 316 252 233 322 327 2 2 2 2 2 2 35901 6496 748 6436 10234;10235 13321;13322 13321 2 GAPESVIER Unmodified 956.49271 0.49270958 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 2.5 0.5 1 1 37.313 37.313 2 2.8518E-06 10004 TMT1-1 164.71 107.66 399.99 611.8 423.07 393.58 455.8 577.56 378 607 443 391 472 554 4 4 4 4 4 4 106650 6497 2344 6437 10236;10237 13323;13324;13325;13326 13324 4 GAPGQPGTILR Unmodified 1065.5931 0.59309232 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 6 0 1 39.807 39.807 2 0.0067791 10127 TMT1-5 83.456 31.768 85.111 78.444 56.07 34.807 63.781 75.998 80 80 58 36 65 73 1 1 1 1 1 1 6051.7 6498 1248 6438 10238 13327 13327 1 GAPLNTPVTEDR Unmodified 1268.6361 0.63607935 1882 Q16134-3;Q16134 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes no 0 0 0 0 0 3 0 1 41.218 41.218 2 9.9128E-05 11793 TMT1-2 83.137 54.441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6499 1882 6439 10239 13328 13328 1 GAPPSSNIEDFHGLLPK Unmodified 1777.8999 0.89989861 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 6 0 1 58.558 58.558 3 2.7767E-19 17506 TMT1-5 138.91 109.56 108.11 121.55 121.44 85.447 127.92 150.92 102 123 123 87 131 145 1 1 1 1 1 1 16214 6500 1109 6440 10240 13329 13329 1 GAPQHYPK Unmodified 896.45045 0.45045083 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 6 0 1 27.893 27.893 3 0.033926 5425 TMT1-5 53.166 38.96 61.185 118.02 76.285 64.774 91.704 106.12 58 116 80 65 94 102 1 1 1 1 1 1 4654 6501 1501 6441 10241 13330 13330 1 GAQAAIVVYDITNQETFAR Unmodified 2066.0433 0.043268383 1371 P61020 RAB5B Ras-related protein Rab-5B yes yes 0 0 0 0 0 5.5 0.5 1 1 70.978 70.978 3 6.3415E-10 22226 TMT1-4 99.273 97.975 84.924 101.67 67.731 81.821 84.141 90.341 80 102 72 80 87 87 2 2 2 2 2 2 28746 6502 1371 6442 10242;10243 13331;13332 13331 2 GAQAAIVVYDITNTDTFAR Unmodified 2025.0167 0.016719282 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 6 0 1 71.962 71.962 2 1.6548E-22 22817 TMT1-5 130.47 110.63 23.226 52.371 19.543 22.498 20.388 46.322 22 51 22 22 22 44 1 1 1 1 1 1 17831 6503 1236 6443 10244 13333 13333 1 GAQATLSSTTK Unmodified 1063.551 0.55095274 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 35.937 35.937 2 3.1013E-09 8569 TMT1-5 166.14 115.26 84.554 139.49 98.004 80.015 84.224 90.339 80 138 102 80 87 87 1 1 1 1 1 1 13616 6504 1666 6444 10245 13334 13334 1 GAQQHVLKK Unmodified 1007.5876 0.58761301 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 1 8 0 1 29.245 29.245 4 0.030426 5543 TMT1-7 50.04 31.26 99.512 114.54 129.83 101.78 104.65 136.66 94 116 131 102 109 131 1 1 1 1 1 1 3239.4 6505 822 6445 10246 13335 13335 1 GAQVEEIWSLEPENFEK Unmodified 2003.9476 0.94763666 3028 Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 0 0 0 4 0 1 73.557 73.557 3 2.4009E-06 23507 TMT1-3 90.385 81.102 38.243 43.776 27.584 21.88 27.745 46.112 36 44 29 22 29 44 1 1 1 1 1 1 5970.7 6506 3028 6446 10247 13336 13336 1 GASALQLER Unmodified 943.50869 0.50869399 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 5.67 1.7 1 1 1 39.593 39.593 2 5.8967E-14 9857 TMT1-4 189.38 146.91 3810.5 5172.2 4226.4 3674.9 3620.2 5378.1 3599 5169 4362 3655 3799 5142 4 4 4 4 4 4 903680 6507 2650 6447 10248;10249;10250 13337;13338;13339;13340 13339 4 GASGTFQLK Unmodified 907.47633 0.47633123 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 0 8 0 1 46.679 46.679 2 0.00069044 12258 TMT1-7 130.75 80.708 277.72 383.59 247.3 215.6 305.79 340.92 262 382 260 216 313 328 1 1 1 1 1 1 39090 6508 1970 6448 10251 13341 13341 1 GASGTFQLKK Unmodified 1035.5713 0.57129425 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 1 9 0 1 42.96 42.96 3 0.0080395 9114 TMT1-8 58.699 19.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6509 1970 6449 10252 13342 13342 1 GASIVEDK Unmodified 817.41815 0.41814765 387 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 3.33 0.943 1 2 40.351 40.351 2;3 0.0011068 11399 TMT1-1 110.12 46.634 122.64 182.82 152.86 170.38 161.45 157.42 116 182 159 167 167 152 2 2 2 2 2 2 98446 6510 387 6450 10253;10254;10255 13343;13344;13345 13343 3 GASIVEDKLVEDLR Unmodified 1542.8253 0.82533668 387 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 0 0 0 0 1 4 0 1 63.12 63.12 3 3.7256E-10 19413 TMT1-3 122.2 109.57 183.97 353.05 160.79 169.13 203.21 283.09 174 346 176 167 211 271 1 1 1 1 1 1 37587 6511 387 6451 10256 13346 13346 1 GASYILK Unmodified 750.42759 0.42759012 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 7.5 0.5 1 1 47.592 47.592 2 0.0081007 12536 TMT1-7 119.89 69.848 1225.3 1831.3 1155.9 1128.8 1521.5 1366.9 1157 1817 1222 1122 1549 1323 3 3 3 3 3 3 247770 6512 967 6452 10257;10258 13347;13348;13349 13348 3 GATGIFPLSFVK Unmodified 1235.6914 0.69140938 1826 Q15080;Q15080-3 NCF4 Neutrophil cytosol factor 4 yes no 0 0 0 0 0 9 0 1 74.942 74.942 2 4.6485E-07 21588 TMT1-8 123.51 78.76 46.669 57.858 42.296 36.027 42.544 53.152 44 58 44 36 44 51 1 1 1 1 1 1 5010.1 6513 1826 6453 10259 13350 13350 1 GATQQILDEAER Unmodified 1329.6525 0.6524577 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 2.5 0.5 1 1 47.487 47.487 2 4.4608E-56 14031 TMT1-1 240.33 202.63 277.64 371.5 270.68 217.23 319.14 345.87 262 371 281 219 326 333 2 2 2 2 2 2 72795 6514 1504 6454 10260;10261 13351;13352 13351 2 GATYGKPVHHGVNQLK Unmodified 1704.906 0.90598704 1389 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 1 8 0 2 32.448 32.448 4;5 1.9039E-06 6692 TMT1-7 92.703 67.649 574.04 797.33 588.5 491 737.06 694.25 542 795 611 494 749 671 2 2 2 2 2 2 40384 6515 1389 6455 10262;10263 13353;13354 13354 2 GAVDAAVPTNIIAAK Unmodified 1409.7878 0.78782897 2874 Q9UI12-2;Q9UI12 ATP6V1H V-type proton ATPase subunit H yes no 0 0 0 0 0 6 0 1 59.982 59.982 3 0.012573 18095 TMT1-5 51.073 35.807 153.99 141.41 149.01 139.02 155.82 150.12 145 145 152 138 160 145 1 1 1 1 1 1 14836 6516 2874 6456 10264 13355 13355 1 GAVDDDVAEADIISTVEFNHSGELLATGDK Unmodified 3087.452 0.45203314 1472 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 0 0 0 3 0 1 75.576 75.576 4 0.017153 25309 TMT1-2 30.602 18.289 23.399 14 22.846 0 23.012 0 22 15 22 0 22 0 1 1 1 0 1 0 1731 6517 1472 6457 10265 13356 13356 1 GAVDGGLSIPHSTK Unmodified 1337.6939 0.69392858 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 8 0 1 43.521 43.521 3 2.8322E-14 11035 TMT1-7 124.3 104.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6518 1132 6458 10266 13357 13357 1 GAVDIDDNGYPDLIVGAYGANQVAVYR Unmodified 2824.3668 0.36678737 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 4.33 0.471 2 1 75.593 75.593 3 4.37E-45 24363 TMT1-3 153.83 141.71 107.96 153.5 120.19 119.17 140.48 166.55 102 153 125 118 145 160 5 5 5 5 5 5 105410 6519 565 6459 10267;10268;10269 13358;13359;13360;13361;13362;13363 13359 6 GAVEIIFK Unmodified 875.51165 0.5116541 491 P05166;P05166-2 PCCB Propionyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 7 0 1 62.269 62.269 2 0.0061577 18353 TMT1-6 109.01 19.717 99.825 107.86 82.885 95.941 98.94 97.381 94 109 87 94 102 94 1 1 1 1 1 1 8376.6 6520 491 6460 10270 13364 13364 1 GAVGALLVYDIAK Unmodified 1288.7391 0.73908786 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 7.33 0.471 2 1 73.193 73.193 2;3 8.4839E-37 22656 TMT1-6 182.64 122.88 292.33 595.65 677.77 345.08 600.19 671.51 279 589 675 363 611 646 3 3 3 3 3 3 153910 6521 1880 6461 10271;10272;10273 13365;13366;13367;13368;13369 13365 5 GAVHQLCQSLAGK Unmodified 1367.698 0.6979681 587 P09417-2;P09417 QDPR Dihydropteridine reductase yes no 0 0 0 0 0 8.5 0.5 1 1 44.04 44.04 3 4.5544E-05 11165 TMT1-7 77.912 49.615 69.087 63.554 56.681 42.95 93.77 75.142 65 65 58 44 94 73 1 1 1 1 1 1 4249.3 6522 587 6462 10274;10275 13370;13371 13370 2 GAVIVVSHDAR Unmodified 1122.6146 0.61455605 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 5 0 1 33.396 33.396 3 0.00040636 7398 TMT1-4 94.66 84.556 85.208 78.715 39.461 67.221 78.289 67.056 80 80 44 65 80 65 1 1 1 1 1 1 13624 6523 2219 6463 10276 13372 13372 1 GAVPWYTINLDLPPYK Unmodified 1845.9665 0.96652161 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 9 0 1 80.553 80.553 3 0.0013374 23738 TMT1-8 57.414 32.092 53.928 95.498 52.715 90.675 67.735 99.337 51 94 58 87 72 95 2 2 2 2 2 2 6902 6524 1714 6464 10277 13373;13374 13373 2 GAVQSGVDK Unmodified 859.43995 0.43994572 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 0 5 0 1 33.396 33.396 2 0.0014236 7418 TMT1-4 119.68 48.768 108.5 107.52 68.363 81.374 105.88 128.1 102 109 73 80 109 123 1 1 1 1 1 1 9619.7 6525 231 6465 10278 13375 13375 1 GAVSAEQVIAGFNR Unmodified 1417.7314 0.73137672 2868 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 59.605 59.605 3 0.00018169 17360 TMT1-6 79.466 52.717 123.06 136.5 121.54 85.599 119.52 182.07 116 138 124 87 124 174 2 2 2 2 2 2 24033 6526 2868 6466 10279;10280 13376;13377 13377 2 GAVVVLNMVEASR Unmodified 1343.7231 0.72312022 2642 Q9H3U1;Q9H3U1-2;Q9H3U1-3 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 8 0 1 65.736 65.736 3 6.9694E-06 19803 TMT1-7 84.718 78.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6527 2642 6467 10281 13378 13378 1 GAVWGATLNK Unmodified 1015.5451 0.5450795 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 9 0 1 53.481 53.481 2 1.3288E-17 13170 TMT1-8 189.13 119.93 146.47 180.77 115.93 125.01 133.94 135.82 138 181 123 123 138 131 1 1 1 1 1 1 18412 6528 3000 6468 10282 13379 13379 1 GAVYYFK Unmodified 846.42759 0.42759012 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 8 0 1 52.977 52.977 2 0.028664 14776 TMT1-7 91.26 41.67 161.15 147.47 202.89 159.35 182.87 218.64 152 152 203 160 189 210 1 1 1 1 1 1 9545.1 6529 2344 6469 10283 13380 13380 1 GAWSNVLR Unmodified 901.477 0.47699993 665;488 P05141;P12236;P12235 SLC25A5;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 8.5 0.5 1 1 49.56 49.56 2 0.0085817 11604 TMT1-8 93.561 54.725 714.74 1058.5 885.55 693.23 957.17 1111.2 676 1054 909 699 982 1068 2 2 2 2 2 2 160230 6530 488;665 6470 10284;10285 13381;13382 13382 2 GAYCLSVSDFDNAK Unmodified 1545.677 0.67695789 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 6 0 1 59.892 59.892 3 1.1208E-07 18019 TMT1-5 112.02 92.185 84.694 108.58 100.63 62.592 130.54 105.01 80 109 102 65 131 102 1 1 1 1 1 1 12867 6531 673 6471 10286 13383 13383 1 GAYIYNALIEFIR Unmodified 1541.8242 0.82421447 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 2 88.164 88.164 2;3 7.6373E-11 26798 TMT1-8 125.72 75.114 46.776 35.492 43.195 45.967 34.208 69.38 44 37 44 45 37 66 2 2 2 2 2 2 17469 6532 902 6472 10287;10288 13384;13385 13385 2 GAYLLMELAK Unmodified 1107.5998 0.59981719 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 8 0 1 73.687 73.687 2 8.7725E-10 22915 TMT1-7 176.79 122.24 285.68 490.27 262.08 249.3 268.67 493.35 270 483 281 247 284 470 2 2 2 2 2 2 37597 6533 2482 6473 10289 13386;13387 13386 2 GAYSLSIR Unmodified 865.46577 0.46576654 549;505;605 P06241-3;P06241-2;P06241;P07947;P09769 FYN;YES1;FGR Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fgr no no 0 0 0 0 0 6.5 0.5 1 1 44.107 44.107 2 0.0043067 11374 TMT1-6 76.833 64.006 176.66 233.24 228.5 220.02 246.24 180.59 167 234 234 218 251 176 1 1 1 1 1 1 20867 6534 505;549;605 6474 10290;10291 13388;13389 13389 2 GCAFVTFSTR Unmodified 1144.5335 0.53352853 348 O95319-5;O95319-2;O95319;O95319-4;O95319-3 CELF2 CUGBP Elav-like family member 2 yes no 0 0 0 0 0 9 0 1 51.365 51.365 2 0.00043457 12337 TMT1-8 112.8 75.781 46.429 80.936 62.99 50.497 79.315 59.565 44 80 65 51 80 58 1 1 1 1 1 1 6281.2 6535 348 6475 10292 13390 13390 1 GCALQCAILSPAFK Unmodified 1534.7636 0.76360482 1009;2303 P34932;Q92598-2;Q92598-3;Q92598;Q92598-4 HSPA4;HSPH1 Heat shock 70 kDa protein 4;Heat shock protein 105 kDa no no 0 0 0 0 0 9 0 1 65.815 65.815 3 6.8047E-07 18014 TMT1-8 101.32 77.716 162.57 148.37 143.12 115.22 161.31 235.25 153 152 146 116 167 225 2 2 2 2 2 2 18060 6536 1009;2303 6476 10293 13391;13392 13391 2 GCCFVTFYTR Unmodified 1309.5584 0.55836308 348 O95319-5;O95319-2;O95319;O95319-4;O95319-3;Q92879-5;Q92879-2;Q92879-3;Q92879-6;Q92879;Q92879-4 CELF2;CELF1 CUGBP Elav-like family member 2;CUGBP Elav-like family member 1 yes no 0 0 0 0 0 8 0 1 56.449 56.449 2 0.019565 16133 TMT1-7 76.1 58.774 92.053 131.39 106.77 63.364 70.075 98.204 87 131 109 65 73 94 1 1 1 1 1 1 8590.2 6537 348 6477 10294 13393 13393 1 GCDVVVIPAGVPR Unmodified 1337.7126 0.71255553 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 55.638 55.638 2 2.6241E-10 16288 TMT1-5 135.86 123.28 299.06 490.98 356.12 297.62 307.03 408.04 283 486 370 297 320 391 3 3 3 3 3 3 81222 6538 1075 6478 10295;10296 13394;13395;13396 13395 3 GCELVDLADEVASVYQSYQPR Unmodified 2398.1111 0.11108995 2092 Q7Z434;Q7Z434-2 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 0 5 0 1 91.731 91.731 4 2.1159E-05 30148 TMT1-4 66.325 50.383 0 30.627 13.717 15.162 22.081 6.8319 0 29 15 15 22 7 0 1 1 1 1 1 4394.7 6539 2092 6479 10297 13397 13397 1 GCEVIQEIK Unmodified 1074.5379 0.53794521 626 P10155;P10155-3;P10155-5;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 4 0 1 50.355 50.355 2 0.0015892 14409 TMT1-3 117.31 55.633 84.69 123.68 88.509 120.12 73.988 121.54 80 123 94 116 80 116 1 1 1 1 1 1 11107 6540 626 6480 10298 13398 13398 1 GCEVVPDVNVSGQK Unmodified 1486.7086 0.70859237 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 3.5 1.5 1 2 1 50.249 50.249 3;4 1.8081E-27 14298 TMT1-3 182.03 162.36 2399.7 3239.6 2939.2 2058 2488.7 3421.2 2268 3243 2992 2086 2582 3276 7 7 7 7 7 7 764920 6541 2112 6481 10299;10300;10301;10302 13399;13400;13401;13402;13403;13404;13405 13401 7 GCEVVVSGK Unmodified 933.45897 0.45896661 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 5 0 1 39.514 39.514 2 0.0010571 9835 TMT1-4 124.92 60.658 84.743 101.17 98.617 117.86 162.25 204.31 80 102 102 116 167 196 1 1 1 1 1 1 13604 6542 861 6482 10303 13406 13406 1 GCGTVLLSGPR Unmodified 1115.5757 0.5757277 1607 Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 0 7 0 1 44.27 44.27 2 2.1692E-23 11222 TMT1-6 198.61 141.8 85.155 62.378 62.183 89.228 114.68 74.546 80 65 65 87 116 73 1 1 1 1 1 1 14957 6543 1607 6483 10304 13407 13407 1 GCIEAFDDSGK Unmodified 1197.4972 0.49720261 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 4 0 1 49.809 49.809 3 0.00010134 14159 TMT1-3 103.08 92.56 215.54 183.83 227.24 140.39 241.78 234.02 203 190 227 145 245 226 1 1 1 1 1 1 40624 6544 2085 6484 10305 13408 13408 1 GCITIIGGGDTATCCAK Unmodified 1753.7797 0.77972517 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 6.5 0.5 1 1 52.727 52.727 3 8.6528E-19 15193 TMT1-5 132.05 113.91 613.82 914.99 836.72 682.37 875.3 920.56 581 912 855 685 897 887 3 3 3 3 3 3 149730 6545 397 6485 10306;10307 13409;13410;13411 13409 3 GCLDEETSR Unmodified 1065.4397 0.43968773 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 30.686 30.686 2 0.003611 7259 TMT1-1 101.25 60.68 69.366 33.03 35.687 20.963 50.822 45.454 65 36 36 22 51 44 1 1 1 1 1 1 5361.3 6546 1833 6486 10308 13412 13412 1 GCLELIK Unmodified 831.45242 0.45242467 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 6 0 1 53.682 53.682 2 0.0243 15579 TMT1-5 94.262 31.548 161.15 165.82 187.33 143.75 189.6 165.15 152 169 189 145 193 160 1 1 1 1 1 1 17022 6547 657 6487 10309 13413 13413 1 GCLLYGPPGTGK Unmodified 1218.6067 0.60669348 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 8 0 1 52.939 52.939 2 3.3771E-08 14755 TMT1-7 135.86 84.582 54.069 64.591 55.253 75.316 62.725 52.576 51 65 58 73 65 51 1 1 1 1 1 1 10187 6548 1437 6488 10310 13414 13414 1 GCNHLVCR Unmodified 1014.4488 0.44875305 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 5.5 0.5 1 1 23.136 23.136 3 0.013684 3825 TMT1-4 68.787 37.414 30.874 23.099 21.273 22.203 30.557 24.712 29 24 22 22 31 24 2 2 2 2 2 2 2018.6 6549 2378 6489 10311;10312 13415;13416 13415 2 GCPPDDIENPR Unmodified 1268.5455 0.54554978 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 2 0 1 36.17 36.17 2 9.0204E-09 9412 TMT1-1 163.88 143.09 70.116 63.358 64.264 42.897 72.592 52.295 66 65 65 44 73 51 2 2 2 2 2 2 8211.5 6550 500 6490 10313 13417;13418 13417 2 GCSFLPDPYQK Unmodified 1310.5965 0.59652272 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 6.5 0.5 1 1 58.562 58.562 3 4.6476E-05 16921 TMT1-6 106.4 82.018 348.6 570.3 439.65 326.07 447.36 547.95 330 565 453 330 460 526 3 3 3 3 3 3 78843 6551 538 6491 10314;10315 13419;13420;13421 13421 3 GCSHPSVK Unmodified 870.40179 0.40178608 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7 1 1 1 24.229 24.229 3 0.012915 3974 TMT1-7 69.905 59.381 146.24 169.33 164.94 133.42 170.59 153.97 138 171 168 134 174 149 3 3 3 3 3 3 13326 6552 471 6492 10316;10317 13422;13423;13424 13423 3 GCTATLGNFAK Unmodified 1138.5441 0.54409322 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 7.5 0.5 1 1 49.069 49.069 2 1.2937E-06 13196 TMT1-7 140.49 122.62 176.62 281.7 194.13 173.5 271.95 255.54 167 279 203 174 276 247 2 2 2 2 2 2 28047 6553 727 6493 10318;10319 13425;13426 13426 2 GCTDNLTLTVAR Unmodified 1319.6503 0.65034921 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6 1 1 1 47.086 47.086 2 3.5737E-34 12826 TMT1-4 216.04 199.37 432.93 515.82 558.38 444.86 612.49 545.37 409 521 565 448 623 528 2 2 2 2 2 2 161560 6554 41 6494 10320;10321 13427;13428;13429 13427 3 GCTGSLNMTLQR Unmodified 1336.6228 0.62275425 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 7 0 1 44.775 44.775 2 1.2369E-06 11458 TMT1-6 100.09 73.039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6555 2411 6495 10322 13430 13430 1 GCTVEELLR Unmodified 1075.5332 0.53319418 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 4 0 1 53.244 53.244 2 0.015924 15491 TMT1-3 80.787 69.377 176.37 254.03 259.05 162.19 260.47 208.97 167 254 261 167 263 203 2 2 2 2 2 2 38241 6556 2085 6496 10323 13431;13432 13431 2 GCVVGTK Unmodified 719.36361 0.36360966 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 6 0 1 34.542 34.542 2 0.0093836 8017 TMT1-5 74.415 29.694 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6557 1061 6497 10324 13433 13433 1 GCVVTSVESNSNGR Unmodified 1464.6627 0.66270481 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 2 0 1 38.931 38.931 2 0.0025622 10573 TMT1-1 76.345 50.226 38.147 34.874 51.315 35.524 40.698 107.57 36 36 51 36 44 102 1 1 1 1 1 1 10967 6558 567 6498 10325 13434 13434 1 GCWDSIHVVEVQEK Unmodified 1684.7879 0.78790532 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 5.5 0.5 1 1 53.932 53.932 3;4 1.5755E-11 15535 TMT1-4 128.85 110.48 256.88 273.45 236.52 195.36 253.75 268.85 242 277 243 196 260 259 1 1 1 1 1 1 23783 6559 1144;1145 6499 10326;10327 13435;13436 13435 2 GDAAVRDELMAAVR Unmodified 1472.7406 0.7405612 1810 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 1 4 0 1 53.05 53.05 3 0.0030624 15458 TMT1-3 66.331 35.291 115.45 160.49 117.62 118 94.738 190.24 109 160 123 116 102 181 1 1 1 1 1 1 14546 6560 1810 6500 10328 13437 13437 1 GDACDHDDDNDGIPDDKDNCR Unmodified 2417.8721 0.87205825 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 1 1 0 1 33.841 33.841 4 3.8944E-18 7621 TMT 1-phospho 122.94 122.29 37.046 56.456 37.674 45.605 70.959 35.285 35 56 40 45 71 35 1 1 1 1 1 1 4231.8 6561 554 6501 10329 13438 13438 1 GDACKDDFDHDSVPDIDDICPENVDISETDFR Unmodified 3710.5261 0.52607907 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 1 3 0 1 66.992 66.992 4 1.5407E-06 21943 TMT1-2 63.111 58.156 30.512 51.232 58.325 27.004 64.69 59.982 29 51 58 29 65 58 1 1 1 1 1 1 15025 6562 554 6502 10330 13439 13439 1 GDADQASNILASFGLSAR Unmodified 1791.8751 0.87514042 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 7 0 1 76.236 76.236 3 6.0514E-06 23809 TMT1-6 83.063 73.142 116.01 99.458 74.627 120.79 82.59 113.84 109 102 80 116 88 109 2 2 2 2 2 2 16762 6563 1109 6503 10331 13440;13441 13440 2 GDAEKPEEELEEDDDEELDETLSER Unmodified 2920.2105 0.21052504 2738 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 0 0 0 1 2 0 1 59.159 59.159 3 2.1555E-19 18502 TMT1-1 114.19 108.7 0 30.384 28.248 29.35 35.281 29.907 0 29 29 29 36 29 0 1 1 1 1 1 8249.4 6564 2738 6504 10332 13442 13442 1 GDALEALR Unmodified 843.44503 0.4450311 2201 Q8NBM4-4;Q8NBM4-3;Q8NBM4-2;Q8NBM4 UBAC2 Ubiquitin-associated domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 46.082 46.082 2 0.0047144 12727 TMT1-3 75.854 25.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6565 2201 6505 10333 13443 13443 1 GDAMIMEETGK Unmodified 1180.5104 0.51040983 2943 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 0 0 0 0 0 4 0 1 51.331 51.331 2 0.012183 14826 TMT1-3 77.062 37.144 46.7 42.836 49.712 59.809 33.074 53.422 44 44 51 58 36 51 1 1 1 1 1 1 4134.7 6566 2943 6506 10334 13444 13444 1 GDASKEDIDTAMK Unmodified 1379.6239 0.62385968 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 1 4 0 1 43.575 43.575 3 0.00047002 11728 TMT1-3 85.909 56.896 191.27 260.22 274.55 289.82 224.65 319.79 181 261 281 284 238 306 1 1 1 1 1 1 17633 6567 1909 6507 10335 13445 13445 1 GDCDGVQINVPITFQVK Unmodified 1888.9353 0.93529784 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 6 0 1 70.959 70.959 3 9.5266E-10 22391 TMT1-5 106.19 88.494 68.728 110.04 77.715 42.563 47.703 107.37 65 109 80 44 51 102 1 1 1 1 1 1 17128 6568 485 6508 10336 13446 13446 1 GDDGIFDDNFIEER Unmodified 1640.6954 0.69544472 223 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 0 2 0 1 66.929 66.929 3 2.9403E-08 21475 TMT1-1 115.68 102.91 15.945 45.37 22.209 38.452 35.359 45.895 15 44 22 37 37 44 1 2 1 2 2 2 12131 6569 223 6509 10337 13447;13448 13448 2 GDDLLPAGTEDYIHIR Unmodified 1783.8741 0.87407779 1086 P41567;O60739 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 0 0 3 0 1 61.413 61.413 3 0.0022241 19790 TMT1-2 61.265 45.843 30.732 44.288 27.255 29.429 34.214 60.852 29 44 29 29 36 58 1 1 1 1 1 1 12913 6570 1086 6510 10338 13449 13449 1 GDDNTGENNIVQELTK Unmodified 1745.8068 0.80678609 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 61.413 61.413 3 0.0025473 19791 TMT1-2 60.093 48.822 45.62 34.255 58.17 51.642 33.706 45.942 43 36 58 51 36 44 1 1 1 1 1 1 4487.3 6571 156 6511 10339 13450 13450 1 GDDTPLHLAASHGHR Unmodified 1582.7601 0.76005109 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 4.2 1.83 1 2 2 29.617 29.617 3;4;5 9.2174E-06 6292 TMT1-3 92.269 73.812 833.18 1024.7 1025.2 797.4 961.44 1182.5 787 1032 1041 802 993 1135 8 8 8 8 8 8 114030 6572 1700 6512 10340;10341;10342;10343;10344 13451;13452;13453;13454;13455;13456;13457;13458 13453 8 GDECELLGHSK Unmodified 1243.5503 0.55030081 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 4 0 1 40.023 40.023 3 0.0018769 10318 TMT1-3 78.692 56.218 130.71 136.4 96.874 104.32 74.165 137.53 123 138 102 102 80 131 1 1 1 1 1 1 9893.8 6573 1180 6513 10345 13459 13459 1 GDEEGVPAVVIDMSGLR Unmodified 1742.8509 0.85089951 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 4 0.707 1 2 1 73.103 73.103 2;3 8.6144E-43 23370 TMT1-3 197.47 171.94 231.09 306.41 215.14 234.75 319.31 348 218 306 225 232 327 335 6 6 5 6 6 6 143010 6574 690 6514 10346;10347;10348;10349 13460;13461;13462;13463;13464;13465 13463 6 GDEELDSLIK Unmodified 1117.5503 0.55028404 611 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 0 2.8 0.748 2 2 1 61.039 61.039 2;3 3.6135E-07 19618 TMT1-2 166.07 94.374 1286.2 1923.8 1488.3 1501.4 1929.4 1842.4 1216 1913 1550 1488 1971 1780 8 8 8 8 8 8 596980 6575 611 6515 10350;10351;10352;10353;10354 13466;13467;13468;13469;13470;13471;13472;13473 13470 8 GDEGIFEESFIEER Unmodified 1655.7315 0.73149588 2921 Q9UMY4-1;Q9UMY4;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 0 2 0 1 66.596 66.596 2 3.1974E-07 21284 TMT1-1 114.24 92.153 15.866 29.563 13.365 22.708 28.77 15.169 15 29 15 22 29 15 1 1 1 1 1 1 5585.3 6576 2921 6516 10355 13474 13474 1 GDFCIQVGR Unmodified 1050.4917 0.49166372 846;724 P22392-2;P22392;O60361;P15531;P15531-2 NME2;NME2P1;NME1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A no no 0 0 0 0 0 5 0 1 49.944 49.944 2 0.0015543 14009 TMT1-4 117.81 66.618 231.52 251.49 188.81 205.86 253.63 197.43 218 254 198 203 258 192 1 1 1 1 1 1 61805 6577 846;724 6517 10356 13475 13475 1 GDFDENLNYPEQK Unmodified 1567.6791 0.67906638 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 3.5 0.5 1 1 53.061 53.061 3 4.8529E-05 16440 TMT1-2 99.011 78.347 161.94 225.41 183.39 151.8 180.81 258.14 153 225 189 152 188 247 2 2 2 2 2 2 30570 6578 2841 6518 10357;10358 13476;13477 13476 2 GDFDVSVPK Unmodified 962.47091 0.4709115 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 53.701 53.701 2 0.0025669 15421 TMT1-4 103.55 68.739 99.566 162.18 80.309 80.637 107.23 89.682 94 160 87 80 109 87 1 1 1 1 1 1 9641.1 6579 1632 6519 10359 13478 13478 1 GDFIALDLGGSSFR Unmodified 1453.7201 0.72014333 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6.33 0.471 2 1 72.153 72.153 2;3 0.00011617 22823 TMT1-5 84.566 63.613 208.86 283.96 183.35 238.74 207.67 273.37 197 283 196 232 218 262 5 5 5 5 5 5 79808 6580 787 6520 10360;10361;10362 13479;13480;13481;13482;13483 13480 5 GDFIHVMDNSDPNWWK Unmodified 1959.8574 0.85738187 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 6 0 1 70.803 70.803 3 0.021085 22344 TMT1-5 45.14 39.359 37.956 58.088 63.696 66.382 46.095 122.34 36 58 65 65 51 116 1 1 1 1 1 1 7676.4 6581 1464 6521 10363 13484 13484 1 GDFITIGSR Unmodified 964.49779 0.49779495 1949 Q53H12 AGK Acylglycerol kinase, mitochondrial yes yes 0 0 0 0 0 6 0 1 51.102 51.102 2 0.031098 14716 TMT1-5 73.573 43.069 115.43 183.11 101.07 118.96 95.756 159.3 109 181 109 116 102 152 1 1 1 1 1 1 42167 6582 1949 6522 10364 13485 13485 1 GDFSSANNR Unmodified 966.41552 0.41552189 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 4 2 1 1 1 1 1 1 1 27.686 27.686 2 7.3681E-06 5500 TMT1-3 160.56 95.994 1031 1345.4 1221.9 1026.5 1173.1 1627.4 974 1349 1251 1026 1220 1558 12 12 12 12 12 12 303080 6583 437 6523 10365;10366;10367;10368;10369;10370;10371 13486;13487;13488;13489;13490;13491;13492;13493;13494;13495;13496;13497 13493 12 GDFSSANNRDNTYNR Unmodified 1729.7404 0.74043786 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 3.5 0.5 1 1 29.595 29.595 3 1.2692E-06 7175 TMT1-2 103.79 99.757 61.349 103.37 61.16 59.684 61.559 137.89 58 102 65 59 66 131 2 2 2 2 2 2 19013 6584 437 6524 10372;10373 13498;13499 13498 2 GDGPICLVLAPTR Unmodified 1367.7231 0.72312022 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 0 6.5 0.5 1 1 63.368 63.368 2 9.5068E-11 18779 TMT1-6 142.19 98.975 68.923 79.286 71.008 64.511 122.37 96.712 65 80 73 65 123 94 1 1 1 1 1 1 20921 6585 764;2321 6525 10374;10375 13500;13501 13501 2 GDGPVQGIINFEQK Unmodified 1500.7573 0.75725712 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 0 5.5 0.5 1 1 63.212 63.212 3 1.1454E-14 19394 TMT1-5 133.48 117.54 1018.3 1519.3 1051.1 1010.5 1288.9 1382.1 962 1509 1102 1004 1322 1331 4 4 4 4 4 4 239950 6586 392 6526 10376;10377 13502;13503;13504;13505 13505 4 GDGPWYYYETIDKELIDHSPK Unmodified 2525.1751 0.17507042 190 O43674-2;O43674 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 0 0 0 0 1 5.5 0.5 1 1 70.926 70.926 4 1.1178E-13 22370 TMT1-5 105.91 92.718 131.04 259.43 118.84 125.54 154.57 204.53 124 254 130 124 160 196 2 2 2 2 2 2 15376 6587 190 6527 10378;10379 13506;13507 13507 2 GDGVVLVAPPLR Unmodified 1191.6976 0.69755739 1430 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 0 0 0 0 0 6 0 1 58.433 58.433 2 8.7628E-05 17452 TMT1-5 105.2 85.718 123.08 151.69 104.01 94.317 118.33 174.65 116 152 109 94 123 167 1 1 1 1 1 1 24384 6588 1430 6528 10380 13508 13508 1 GDHSPVTR Unmodified 867.41988 0.41987898 2642 Q9H3U1;Q9H3U1-2;Q9H3U1-3 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 2.5 0.5 1 1 19.114 19.114 3 0.025967 3277 TMT1-2 58.426 4.6717 29.797 22.083 22.717 15.572 29.889 22.599 28 23 23 16 30 22 3 3 3 3 3 3 11618 6589 2642 6529 10381;10382 13509;13510;13511 13511 3 GDIDHVK Unmodified 782.39227 0.39226725 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 32.629 32.629 3 0.028975 7369 TMT1-3 60.788 41.517 108 145 119.69 93.184 128.88 112.52 102 145 123 94 131 109 1 1 1 1 1 1 6834.5 6590 1101 6530 10383 13512 13512 1 GDILTILEQHVPESEGWWK Unmodified 2236.1164 0.11643333 2707 Q9NQ75;Q9NQ75-2;Q9NQ75-3 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 7 0 3 84.734 84.734 3;4 2.7741E-11 27100 TMT1-6 86.8 81.995 61.369 88.316 70.452 65.678 62.105 83.508 58 88 73 65 65 80 2 2 2 2 2 2 24846 6591 2707 6531 10384;10385;10386 13513;13514;13515 13515 3 GDINPNIPYPTR Unmodified 1355.6834 0.68336389 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 5 0 1 50.3 50.3 2 5.252E-08 14124 TMT1-4 112.7 78.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6592 1219 6532 10387 13516 13516 1 GDIPDLSQAPSSLLDALEQHLASLEGK Unmodified 2803.424 0.42396789 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 0 7 0 1 95.243 95.243 4 2.2143E-08 30957 TMT1-6 75.226 66.377 15.826 38.086 12.852 22.749 28.255 30.108 15 37 15 22 29 29 1 1 1 1 1 1 2690.9 6593 1710 6533 10388 13517 13517 1 GDIVFFLQK Unmodified 1065.5859 0.58588168 2103 Q86TP1 PRUNE Protein prune homolog yes yes 0 0 0 0 0 8.5 0.5 1 1 73.521 73.521 2 0.0012645 22887 TMT1-7 121.96 72.143 208.18 237.65 156.01 210.39 174.77 173.04 196 239 167 204 182 167 2 2 2 2 2 2 20003 6594 2103 6534 10389;10390 13518;13519 13518 2 GDLDASVPSMK Unmodified 1118.5278 0.52777445 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 51.958 51.958 3 0.038377 14781 TMT1-4 46.592 29.156 53.643 94.707 101.21 71.865 100.56 82.41 51 94 102 73 102 80 1 1 1 1 1 1 6791.3 6595 1632 6535 10391 13520 13520 1 GDLDLELVLLCK Unmodified 1386.7429 0.74285261 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 6 0 1 81.968 81.968 3 8.7503E-05 26679 TMT1-5 99.522 72.408 23.171 44.665 35.224 45.19 42.672 37.158 22 44 37 44 44 36 1 1 1 1 1 1 4325 6596 1655 6536 10392 13521 13521 1 GDLENAFLNLVQCIQNKPLYFADR Unmodified 2837.417 0.4170488 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 1 9 0 1 95.021 95.021 4 2.0193E-47 29204 TMT1-8 152.95 126.74 178.73 249.09 227.22 251.61 256.24 303.96 169 249 235 247 266 292 2 2 2 2 2 2 84976 6597 534 6537 10393 13522;13523 13522 2 GDLGAFSR Unmodified 821.40317 0.40316629 1715 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 0 0 5 0 1 43.095 43.095 2 0.0023043 11275 TMT1-4 81.642 55.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6598 1715 6538 10394 13524 13524 1 GDLGIEIPAEK Unmodified 1140.6027 0.60265396 706;707 P14618;P14618-3;P30613-2;P30613;P14618-2 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase PKLR no no 0 0 0 0 0 3.8 1.47 1 2 2 59.967 59.967 2;3 7.6517E-12 18225 TMT1-3 174.98 107.42 2693.7 3844.7 4064.1 3477 3905.5 4951 2551 3848 4125 3470 4049 4749 9 9 9 9 9 9 1365000 6599 706;707 6539 10395;10396;10397;10398;10399 13525;13526;13527;13528;13529;13530;13531;13532;13533 13529 9 GDLIGVVEALTR Unmodified 1241.698 0.69795133 2149 Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 PNPLA6 Neuropathy target esterase yes no 0 0 0 0 0 7 0 1 82.797 82.797 2 0.0075526 26443 TMT1-6 76.143 59.203 38.208 51.234 27.162 21.323 58.684 29.239 36 51 29 22 58 29 1 1 1 1 1 1 5970.7 6600 2149 6540 10400 13534 13534 1 GDLLFLTNR Unmodified 1047.5713 0.57129425 1484 P67812-4;P67812;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 0 7 0 1 63.454 63.454 2 0.046204 18792 TMT1-6 67.507 35.572 92.112 122.92 104.12 134.22 146.34 188.77 87 123 109 131 152 181 1 1 1 1 1 1 32866 6601 1484 6541 10401 13535 13535 1 GDLPFVVPR Unmodified 998.55492 0.5549159 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 6.5 0.5 1 1 60.133 60.133 2 0.001272 17494 TMT1-6 121.85 79.741 486.4 722.27 595.09 502.61 563.95 693.86 460 719 613 502 584 666 3 3 3 3 3 3 132370 6602 1019 6542 10402;10403 13536;13537;13538 13537 3 GDLSTALEVAIDCYEK Unmodified 1782.8346 0.83458074 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 80.531 80.531 3 5.4249E-06 25963 TMT1-4 90.498 68.3 30.849 28.425 20.97 21.851 50.268 60.394 29 29 22 22 51 58 1 1 1 1 1 1 6113.9 6603 1101 6543 10404 13539 13539 1 GDNITLLQSVSN Unmodified 1259.6357 0.635745 1429 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 0 0 0 5 0 1 65.489 65.489 2 4.5248E-08 20065 TMT1-4 130.94 91.792 162.31 148.74 185.85 175.53 190.26 194.98 153 153 188 174 196 188 2 2 2 2 2 2 34828 6604 1429 6544 10405 13540;13541 13541 2 GDNNAVDDR Unmodified 974.40535 0.40535113 1484 P67812-4;P67812;P67812-3;P67812-2;P0C7V7 SEC11A;SEC11B Signal peptidase complex catalytic subunit SEC11A;Putative signal peptidase complex catalytic subunit SEC11B yes no 0 0 0 0 0 1 0 1 22.001 22.001 2 0.012992 4392 TMT 1-phospho 84.817 38.845 21.157 24.672 30 19.607 24.724 15.284 20 25 30 20 25 15 1 1 1 1 1 1 2116.8 6605 1484 6545 10406 13542 13542 1 GDPLGTEGGLDASNTER Unmodified 1687.7649 0.76492127 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 2 0 1 46.81 46.81 3 0.030967 13686 TMT1-1 39.364 27.89 30.816 35.889 20.154 30.113 20.331 37.796 29 36 22 29 22 36 1 1 1 1 1 1 5784.5 6606 1658 6546 10407 13543 13543 1 GDPNKPSGFR Unmodified 1073.5254 0.52540669 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 1 6 0 1 32.791 32.791 3 0.0040694 7362 TMT1-5 81.799 41.882 532.7 569.38 516.07 606.86 559.8 766.47 502 577 536 593 587 734 1 1 1 1 1 1 67259 6607 41 6547 10408 13544 13544 1 GDPQVYEELFSYSCPK Unmodified 1917.8455 0.84547978 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 5 0 1 71.878 71.878 3 8.0758E-05 22563 TMT1-4 78.441 54.642 46.509 73.603 55.823 51.23 63.026 76.02 44 73 58 51 65 73 1 1 1 1 1 1 8391.9 6608 2953 6548 10409 13545 13545 1 GDREQLLQR Acetyl (Protein N-term) 1155.5996 0.59963426 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 1 0 0 1 2 0 1 33.488 33.488 2 9.465E-20 8368 TMT1-1 90.777 42.861 46.628 57.746 49.141 52.556 71.854 60.844 44 58 51 52 73 59 2 2 2 2 2 2 67092 6609 1588 6549 10410 13546;13547 13546 2 GDRSEDFGVNEDLADSDAR Unmodified 2066.8777 0.8777192 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 2 0 1 45.765 45.765 3 5.4194E-39 13197 TMT1-1 170.06 161.24 138.48 227.43 157.7 194.21 157.93 227.88 131 225 167 189 167 218 2 2 2 2 2 2 81028 6610 461 6550 10411 13548;13549 13548 2 GDRYDALR Unmodified 964.47264 0.47264284 2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 0 0 0 0 1 3 0 1 29.235 29.235 3 0.010338 7047 TMT1-2 81.95 62.856 69.01 79.529 56.106 34.356 87.643 51.865 65 80 58 36 87 51 1 1 1 1 1 1 3779 6611 2 6551 10412 13550 13550 1 GDSGGPLIVHK Unmodified 1078.5771 0.57710791 402 P00751 CFB Complement factor B;Complement factor B Ba fragment;Complement factor B Bb fragment yes yes 0 0 0 0 0 6 0 1 40.416 40.416 3 0.040357 10348 TMT1-5 45.879 28.148 91.479 144.91 191.74 80.983 142.52 157.96 87 145 189 87 145 152 1 1 1 1 1 1 6688 6612 402 6552 10413 13551 13551 1 GDSGGPLLCNNVAHGIVSYGK Unmodified 2114.0215 0.021487084 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 7 0 2 55.639 55.639 3;4 4.3876E-19 15767 TMT1-6 102.43 84.069 91.614 137.73 175.19 97.788 173.18 126.18 87 138 174 102 174 123 1 1 1 1 1 1 9508.3 6613 564 6553 10414;10415 13552;13553 13553 2 GDSPASSKPISINYR Unmodified 1590.8002 0.80018457 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 1 6 0 1 42.802 42.802 3 7.4158E-05 11298 TMT1-5 87.99 57.659 160.79 212.31 208.43 166.18 209.07 177.39 152 213 212 167 213 172 1 1 1 1 1 1 18152 6614 442 6554 10416 13554 13554 1 GDSPEAR Unmodified 730.32458 0.32458162 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 1 0 1 18.257 18.257 2 0.044402 3345 TMT 1-phospho 84.244 0 32.003 13.467 20.014 14.736 24.765 20.613 30 15 20 15 25 20 1 1 1 1 1 1 1335.8 6615 776 6555 10417 13555 13555 1 GDSPGVVWFK Unmodified 1090.5447 0.54474515 938 P29466-2;P29466;P29466-3 CASP1 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10 yes no 0 0 0 0 0 7 0 1 62.559 62.559 3 0.015952 18502 TMT1-6 58.699 31.6 99.245 161.29 135.01 92.719 105.06 136.65 94 160 138 94 109 131 1 1 1 1 1 1 11117 6616 938 6556 10418 13556 13556 1 GDSQSSWK Unmodified 893.38791 0.38791015 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 37.127 37.127 2;3 0.010866 8903 TMT1-4 72.879 54.568 206.88 277.21 340.73 212.63 283.46 355.42 196 279 340 218 292 341 2 2 2 2 2 2 18347 6617 471 6557 10419;10420 13557;13558 13557 2 GDSTFESK Unmodified 869.37668 0.37667677 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 3 1 1 1 37.465 37.465 2 0.0037744 9183 TMT1-3 129.72 108.82 1644.3 2085.5 1576.6 1399.4 1549.2 2513.1 1551 2089 1638 1393 1625 2399 3 3 3 3 3 3 228420 6618 437 6558 10421;10422 13559;13560;13561 13560 3 GDTLVLGDMDGNLNFWDLK Unmodified 2122.0041 0.004105685 2585 Q9BZH6 WDR11 WD repeat-containing protein 11 yes yes 0 0 0 0 0 6 0 1 87.74 87.74 3 0.00042763 28942 TMT1-5 60.034 48.247 38.353 20.337 28.988 21.919 21.22 22.846 36 22 29 22 22 22 1 1 1 1 1 1 2150.7 6619 2585 6559 10423 13562 13562 1 GDTSGDYKK Unmodified 969.44034 0.44033966 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 1 5 0 1 31.571 31.571 3 0.0092873 6688 TMT1-4 74.162 54.891 974.89 525.59 715.73 384.28 836.21 386.55 915 567 711 405 829 385 1 1 1 1 1 1 33776 6620 578 6560 10424 13563 13563 1 GDTVATLSER Unmodified 1047.5197 0.51965261 842 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 0 3 0 1 38.721 38.721 2 0.0019427 10802 TMT1-2 69.598 40.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6621 842 6561 10425 13564 13564 1 GDTVIDGWQWLINDTLR Unmodified 2000.9956 0.99558991 2536 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 0 7 0 1 92.924 92.924 3 0.0026028 30150 TMT1-6 55.33 36.735 7.1903 29.894 28.557 22.241 5.5003 23.295 7 29 29 22 7 22 1 1 1 1 1 1 2317.5 6622 2536 6562 10426 13565 13565 1 GDVAEGDLIEHFSQFGTVEK Unmodified 2177.0277 0.027677899 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 0 5 0 2 68.69 68.69 3;4 6.6844E-10 21345 TMT1-4 95.5 77.442 108.11 161.48 87.898 104.57 89.052 160.56 102 160 95 102 95 153 2 2 2 2 2 2 19546 6623 1675 6563 10427;10428 13566;13567 13567 2 GDVAFVK Unmodified 734.39629 0.39629 451 P02787;CON__Q2HJF0;CON__Q29443;CON__Q0IIK2 TF Serotransferrin yes no 0 0 0 0 0 6 0 1 47.409 47.409 2 0.027324 13129 TMT1-5 91.906 62.333 300.54 424.05 344.62 329.88 371.94 485.08 284 423 357 327 386 465 1 1 1 1 1 1 34772 6624 451 6564 10429 13568 13568 1 GDVDVSLPK Unmodified 928.48656 0.48656157 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4.5 0.5 1 1 50.981 50.981 2 1.6001E-05 14662 TMT1-3 128.36 98.107 122.77 213.4 105.11 156.56 175.86 182.6 116 210 116 152 181 176 1 1 1 1 1 1 16357 6625 1632 6565 10430;10431 13569;13570 13569 2 GDVEEDETIPDSEQDIRPR Unmodified 2198.9927 0.99274896 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 1 2 0 1 45.304 45.304 3 1.9248E-18 13069 TMT1-1 129.05 124.61 0 45.851 57.71 51.517 41.831 53.172 0 44 58 51 44 51 0 1 1 1 1 1 10678 6626 2336 6566 10432 13571 13571 1 GDVENTILDILGGLR Unmodified 1583.8519 0.85188578 1047 P36959 GMPR GMP reductase 1 yes yes 0 0 0 0 0 6 0 1 95.547 95.547 3 0.00072444 31640 TMT1-5 71.692 52.114 32.126 12.73 0 31.326 19.741 22.889 30 14 0 29 21 22 2 2 0 2 2 2 4100.4 6627 1047 6567 10433 13572;13573 13573 2 GDVGLGLVK Unmodified 856.50182 0.5018177 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 55.333 55.333 2 0.00079397 16227 TMT1-5 128.69 104.53 234.35 334.53 365.14 215.96 203.46 396.08 222 335 366 221 217 377 1 1 1 1 1 1 35223 6628 2071 6568 10434 13574 13574 1 GDVGSADIQDLEK Unmodified 1345.6361 0.63613893 3032 Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes yes 0 0 0 0 0 2.5 0.5 1 1 53.924 53.924 3 2.9593E-08 16723 TMT1-2 118.37 79.568 185.33 254.5 194.92 191.29 194.94 281.19 175 254 203 189 204 269 3 3 3 3 3 3 19342 6629 3032 6569 10435;10436 13575;13576;13577 13576 3 GDVIATDLIGK Unmodified 1100.6077 0.60773933 3094 yes no 0 0 0 0 0 5 0 1 61.491 61.491 2 0.0006826 18502 TMT1-4 73.665 3.7111 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6630 3094 6570 10437 13578 13578 1 GDVICYYGNR Unmodified 1215.5343 0.53425682 2014 Q6ICL3-3;Q6ICL3;Q6ICL3-4;Q6ICL3-5;Q6ICL3-6 TANGO2 Transport and Golgi organization protein 2 homolog yes no 0 0 0 0 0 4 0 1 45.936 45.936 2 0.014851 12663 TMT1-3 78.516 70.195 68.668 124.99 75.077 81.654 69.747 83.29 65 123 80 80 73 80 1 1 1 1 1 1 9564.3 6631 2014 6571 10438 13579 13579 1 GDVIYILSK Unmodified 1006.5699 0.56989727 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 7 0 1 66.853 66.853 2 0.0010589 20177 TMT1-6 83.948 52.575 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6632 289 6572 10439 13580 13580 1 GDVLTIVAVTK Unmodified 1114.6598 0.6597749 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 7.5 0.5 1 1 66.659 66.659 2;3 1.298E-08 20132 TMT1-7 162.36 76.631 193.33 216.49 145.03 147 151.2 273.91 182 218 153 145 160 261 2 2 2 2 2 2 35485 6633 1083 6573 10440;10441 13581;13582 13582 2 GDVLTIVAVTKDPNWYK Unmodified 1918.02 0.020013746 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 1 9 0 1 90.64 90.64 3 0.041278 27695 TMT1-8 37.092 9.1878 23.234 21.096 44.614 36.174 27.381 37.595 22 22 44 36 29 36 1 1 1 1 1 1 8372.7 6634 1083 6574 10442 13583 13583 1 GDVSGVLIAGGENGNIILYDPSK Unmodified 2287.1696 0.16959111 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 5 0 1 75.916 75.916 3 0.00016636 24232 TMT1-4 55.128 52.03 30.697 51.746 26.794 29.733 19.542 61.27 29 51 29 29 22 58 1 1 1 1 1 1 7094 6635 336 6575 10443 13584 13584 1 GDVTAQIALQPALK Unmodified 1423.8035 0.80347903 465 P04179-4;P04179;P04179-3 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 6.75 0.433 1 3 61.178 61.178 2;3;4 3.18E-15 18479 TMT1-5 139.78 117.58 1028.7 1672.3 1345.1 930.35 1363.7 1414 974 1658 1379 948 1391 1363 5 5 5 5 5 5 466000 6636 465 6576 10444;10445;10446;10447 13585;13586;13587;13588;13589 13585 5 GDVTLTFLPLSFWGK Unmodified 1679.8923 0.89229404 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 9 0 1 92.614 92.614 3 0.037342 28371 TMT1-8 37.657 19.245 15.829 37.014 13.301 14.108 21.323 30.306 15 36 15 14 22 29 1 1 1 1 1 1 8086.9 6637 2056 6577 10448 13590 13590 1 GDVVIVLTGWR Unmodified 1213.6819 0.68190733 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 8 0 1 72.273 72.273 2 0.0054234 22364 TMT1-7 86.18 53.765 30.711 28.041 44.505 28.405 34.005 68.32 29 29 44 29 36 65 1 1 1 1 1 1 3471.3 6638 706;707 6578 10449 13591 13591 1 GDVVNQDDLYQALASGK Unmodified 1791.8639 0.86390703 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 5 0 2 67.501 67.501 2;3 5.102E-14 20840 TMT1-4 124.29 106.37 146.35 196.61 123.67 124.38 201.22 157.36 138 196 131 124 203 153 2 2 2 2 2 2 38340 6639 2843 6579 10450;10451 13592;13593 13592 2 GDWFGEK Unmodified 837.36572 0.36571815 1742 Q13976-2;Q13976 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 6 0 1 54.37 54.37 2 0.022671 15867 TMT1-5 95.531 39.854 199.84 326.5 220.87 190.15 173.66 262.61 189 323 231 189 183 251 1 1 1 1 1 1 20359 6640 1742 6580 10452 13594 13594 1 GDYAPILQK Unmodified 1003.5338 0.53384611 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 6 0 1 53.268 53.268 2 0.0012645 15427 TMT1-5 121.96 95.572 138.72 182.76 155.29 138.41 168.42 210.53 131 183 160 138 174 202 1 1 1 1 1 1 19375 6641 2782 6581 10453 13595 13595 1 GDYDAFFEAR Unmodified 1189.504 0.50400254 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 0 3.5 0.5 1 1 59.039 59.039 2 6.2184E-07 17834 TMT1-3 165.15 136.05 888.44 1266.6 910.74 750.67 1019.1 1180.8 839 1261 947 754 1046 1135 4 4 4 4 4 4 264270 6642 269 6582 10454;10455 13596;13597;13598;13599 13599 4 GDYGPPGR Unmodified 817.37187 0.37186616 1896 Q16630-3;Q16630;Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 0 3 0 1 30.718 30.718 2 0.012099 7610 TMT1-2 97.033 57.271 92.423 101.12 70.208 50.387 62.295 98.426 87 102 73 51 65 94 1 1 1 1 1 1 7498.7 6643 1896 6583 10456 13600 13600 1 GDYPLEAVR Unmodified 1018.5084 0.50835964 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 2.5 1.12 1 1 1 1 46.666 46.666 2 1.3565E-14 13937 TMT1-2 191.78 166.89 5036.9 7396.9 5586.7 4495.6 5709.6 6337.5 4760 7359 5782 4516 5864 6098 7 7 7 7 7 7 1248100 6644 706;707 6584 10457;10458;10459;10460 13601;13602;13603;13604;13605;13606;13607 13605 7 GDYPQAMK Unmodified 908.4062 0.40620276 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5 0 1 40.381 40.381 2 0.0011894 10199 TMT1-4 109.21 85.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6645 986 6585 10461 13608 13608 1 GEADRDTYR Unmodified 1081.4789 0.47885043 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 1 2 0 1 21.343 21.343 3 0.015301 3753 TMT1-1 68.371 42.432 15.957 14.704 10.782 3.5261 10.805 15.682 15 15 11 4 11 15 1 1 1 1 1 1 1649.4 6646 1137 6586 10462 13609 13609 1 GEAELELQLRPAR Unmodified 1480.7998 0.79979063 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 4 0 1 46.86 46.86 3 0.00052801 13039 TMT1-3 84.718 73.673 53.776 87.521 85.001 81.062 69.774 83.289 51 87 87 80 73 80 1 1 1 1 1 1 11447 6647 772 6587 10463 13610 13610 1 GEAIEAILAALEVVSEPFR Unmodified 2013.0783 0.078256906 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 8.5 0.5 1 1 116 116 3 1.1306E-17 34411 TMT1-7 124.29 93.324 0 1.0477 0.97387 5.3882 0.99932 4.264 0 1 1 5 1 4 0 1 1 2 1 1 1167.4 6648 1683 6588 10464;10465 13611;13612;13613 13611 3 GEAQVWTQLLR Unmodified 1299.6935 0.69353465 565 P08514 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes yes 0 0 0 0 0 6.2 2.64 1 2 2 66.047 66.047 2;3 4.7604E-07 19853 TMT1-6 131.54 63.552 2974.2 3629.8 3630.4 2589.6 3765.8 4237.6 2809 3657 3677 2632 3853 4076 8 8 8 8 8 8 1072500 6649 565 6589 10466;10467;10468;10469;10470 13614;13615;13616;13617;13618;13619;13620;13621 13617 8 GEATVSFDDPPSAK Unmodified 1419.6518 0.65178899 2318;1026 P35637-2;P35637;Q92804-2;Q92804 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 0 4 0 1 49.088 49.088 3 2.2142E-05 13931 TMT1-3 92.457 75.924 138.34 265.89 148.94 168.94 250.52 276.41 131 261 160 167 256 266 1 1 1 1 1 1 41011 6650 1026;2318 6590 10471 13622 13622 1 GECEDMLSK Unmodified 1067.4263 0.42634585 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 3 0 1 44.606 44.606 2 0.0024969 13145 TMT1-2 103.7 71.766 68.907 63.051 87.483 56.58 85.045 97.777 65 65 87 58 87 94 1 1 1 1 1 1 10371 6651 1684 6591 10472 13623 13623 1 GECLCGQCVCHSSDFGK Unmodified 1999.7645 0.76448581 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 6 0.816 1 1 1 42.238 42.238 3 2.0037E-24 10900 TMT1-4 144.97 129.21 423.39 609.8 639.79 459.3 690.92 709.43 401 610 646 467 704 684 3 3 3 3 3 3 128430 6652 484 6592 10473;10474;10475 13624;13625;13626 13624 3 GEDFYCVTCHETK Unmodified 1644.6548 0.65484224 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 4 0 1 44.158 44.158 3 6.6114E-11 11935 TMT1-3 132.9 123.24 176.63 208.35 254.16 163.27 218.47 273.06 167 211 254 167 225 262 2 2 2 2 2 2 45328 6653 1735 6593 10476 13627;13628 13627 2 GEDIGEDLFSEALGR Unmodified 1606.7475 0.74748029 2170 Q8N2G8;Q8N2G8-3;Q8N2G8-2 GHDC GH3 domain-containing protein yes no 0 0 0 0 0 3 0 1 75.369 75.369 3 0.0026184 25197 TMT1-2 46.156 21.774 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6654 2170 6594 10477 13629 13629 1 GEEDNSLSVR Unmodified 1104.5047 0.50473083 915 P27701-2;P27701 CD82 CD82 antigen yes no 0 0 0 0 0 2 0 1 34 34 2 7.5733E-05 8584 TMT1-1 105.2 64.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6655 915 6595 10478 13630 13630 1 GEEEEFDHDVAEDLGLLQFVR Unmodified 2446.1288 0.12884851 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 3 0 1 82.892 82.892 4 0.00082629 27992 TMT1-2 52.612 44.523 14.947 6.8327 6.8158 6.9754 14.324 23.452 14 7 7 7 14 22 2 1 1 1 1 1 1809.4 6656 772 6596 10479 13631;13632 13632 2 GEEILSGAQR Unmodified 1058.5356 0.53563702 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3 0.816 1 1 1 39.429 39.429 2 0.00015151 11066 TMT1-2 133.98 52.335 314.61 405.06 341.59 227.63 296.89 340.11 297 406 349 232 305 327 3 3 3 3 3 3 46559 6657 714 6597 10480;10481;10482 13633;13634;13635 13634 3 GEELDEDLFLQLTGGHEAF Unmodified 2118.9746 0.9745797 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 4 0.816 1 1 1 86.71 86.71 2;3 2.6189E-23 28618 TMT1-3 132.61 117.69 106.22 84.622 110.53 64.64 106.5 63.692 100 88 110 67 106 62 4 4 4 4 3 3 60003 6658 2112 6598 10483;10484;10485 13636;13637;13638;13639;13640 13639 5 GEELGGGQDPVQLLSGFPR Unmodified 1954.9749 0.97485447 1582 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 72.378 72.378 3 4.7526E-05 22767 TMT1-4 69.07 37.242 46.395 57.096 88.987 33.384 35.095 29.913 44 58 87 36 36 29 1 1 1 1 1 1 6920.7 6659 1582 6599 10486 13641 13641 1 GEENLMDAQVK Unmodified 1232.5707 0.5707019 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 3 0 1 49.007 49.007 3 6.5774E-06 14846 TMT1-2 116.54 68.535 61.393 103.49 53.627 58.6 84.952 97.78 58 102 58 58 87 94 1 1 1 1 1 1 10298 6660 1232 6600 10487 13642 13642 1 GEEQSAIPYFPFIPDQPFR Unmodified 2237.0793 0.079319539 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 6 0 1 83.662 83.662 3 1.1845E-09 27390 TMT1-5 94.838 77.842 84.959 94.211 68.221 105.14 121.02 81.827 80 95 73 102 123 80 2 2 2 2 2 2 62170 6661 1934 6601 10488 13643;13644 13644 2 GEFAIDGYSVR Unmodified 1212.5775 0.57750184 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 4 0 1 55.717 55.717 2 2.4561E-07 16483 TMT1-3 152.17 133.86 184.2 215.56 237.78 180.5 226.07 241.93 174 218 240 182 232 233 2 2 2 2 2 2 55809 6662 289 6602 10489 13645;13646 13645 2 GEFEGFVAVVNK Unmodified 1294.6558 0.65575216 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 6 0 1 66.428 66.428 3 5.3144E-05 20613 TMT1-5 101.93 80.628 92.465 92.604 70.404 57.467 92.04 106.11 87 94 73 58 94 102 1 1 1 1 1 1 12536 6663 2782 6603 10490 13647 13647 1 GEFFELIR Unmodified 1009.5233 0.52328142 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 6 0 1 67.043 67.043 2 0.013083 20824 TMT1-5 95.741 54.089 115.59 129.59 119.47 118.12 82.215 97.858 109 131 123 116 87 94 1 1 1 1 1 1 27211 6664 322 6604 10491 13648 13648 1 GEFGDVMLGDYR Unmodified 1357.5973 0.597251 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 4 0 1 62.741 62.741 2 1.1088E-16 19293 TMT1-3 152.69 123.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6665 1083 6605 10492 13649 13649 1 GEFKDEEETVTTK Unmodified 1511.6991 0.69913312 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 1 3 0.816 1 1 1 44.563 44.563 3 1.7741E-05 12960 TMT1-1 104.17 79.374 383.22 694.14 466.31 382.58 496.73 527.35 363 684 487 384 509 508 3 3 3 3 3 3 54757 6666 1789 6606 10493;10494;10495 13650;13651;13652 13650 3 GEFTYYEIQDNTGK Unmodified 1663.7366 0.73658126 1899 Q16666-3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 0 4 0 1 57.727 57.727 3 6.2311E-15 17340 TMT1-3 137.46 117.62 185.18 172.96 108.66 124.45 186.6 156.71 174 176 116 123 189 152 1 1 1 1 1 1 21617 6667 1899 6607 10496 13653 13653 1 GEFVTTVQQR Unmodified 1163.5935 0.59348625 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 5 0 1 41.391 41.391 2 0.00062734 10667 TMT1-4 111.61 67.23 84.698 92.406 113.58 133.92 132.76 158.24 80 94 116 131 138 152 1 1 1 1 1 1 66415 6668 1074 6608 10497 13654 13654 1 GEFYNEASNLQVAIR Unmodified 1709.8373 0.83729835 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 5 0 1 61.084 61.084 3 0.00041658 18340 TMT1-4 56.339 35.912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6669 1206 6609 10498 13655 13655 1 GEGAIGSLDYTPEER Unmodified 1592.7318 0.73183023 2986 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 yes yes 0 0 0 0 0 2 0 1 50.817 50.817 3 1.7333E-08 15238 TMT1-1 93.106 68.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6670 2986 6610 10499 13656 13656 1 GEGERPAQNEK Unmodified 1213.5687 0.56872807 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 2 0 1 23.507 23.507 3 2.4291E-05 4433 TMT1-1 114.76 80.385 69.058 72.106 54.396 82.734 77.832 59.607 65 73 58 80 80 58 1 1 1 1 1 1 5210.1 6671 1261 6611 10500 13657 13657 1 GEGESPQAR Unmodified 929.42027 0.42027292 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 2 0.816 1 1 1 20.029 20.029 2 0.0018213 3471 TMT1-1 112.41 75.651 137.71 45.759 80.602 56.519 110.12 68.28 129 53 80 58 110 67 3 3 3 3 3 3 14444 6672 776 6612 10501;10502;10503 13658;13659;13660 13659 3 GEGGILINSQGER Unmodified 1328.6684 0.66844211 970 P31040;P31040-2;P31040-3 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 3 0 1 42.704 42.704 2 2.9686E-10 12390 TMT1-2 134.56 126.92 54.015 64.443 64.298 42.505 93.278 90.08 51 65 65 44 94 87 1 1 1 1 1 1 12931 6673 970 6613 10504 13661 13661 1 GEGGTTNPHIFPEGSEPK Unmodified 1852.8592 0.85915601 2405 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 0 4 0 1 43.101 43.101 3 5.4075E-25 11550 TMT1-3 125.51 105.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6674 2405 6614 10505 13662 13662 1 GEGPDVDVNLPK Unmodified 1238.6143 0.61428128 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3 0.816 1 1 1 53.172 53.172 2 1.5422E-08 15450 TMT1-3 144.65 92.067 299.61 465.52 285.86 281.64 449.36 427.44 283 461 303 281 456 413 3 3 3 3 3 3 56577 6675 1632 6615 10506;10507;10508 13663;13664;13665 13665 3 GEGPDVDVSLPK Unmodified 1211.6034 0.60338224 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 2 54.046 54.046 2;3 5.6389E-10 15866 TMT1-3 155.11 92.569 214.59 402.44 201.51 205.17 249.85 308.41 203 395 218 203 258 296 2 2 2 2 2 2 29397 6676 1632 6616 10509;10510 13666;13667 13666 2 GEGPDVDVTLPK Unmodified 1225.619 0.6190323 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 54.704 54.704 3 0.0057328 16083 TMT1-3 64.199 57.958 99.588 169.8 70.18 127.74 133.56 143.3 94 167 80 123 138 138 1 1 1 1 1 1 16218 6677 1632 6617 10511 13668 13668 1 GEGPEFDVNLSK Unmodified 1290.6092 0.6091959 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 56.68 56.68 3 0.00039931 16887 TMT1-3 87.216 53.807 169.53 239.16 158 168.22 260.38 264.4 160 238 167 167 265 255 1 1 1 1 1 1 26464 6678 1632 6618 10512 13669 13669 1 GEGPEVDVK Unmodified 928.45018 0.45017606 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2 0 1 41.044 41.044 2 0.0043234 11404 TMT1-1 99.688 51.839 99.495 145.79 106.25 54.757 122.53 105.24 94 145 109 58 123 102 1 1 1 1 1 1 8543.4 6679 1632 6619 10513 13670 13670 1 GEGPEVDVNLPK Unmodified 1252.6299 0.62993134 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3.25 0.829 1 1 2 53.564 53.564 2;3 2.7112E-08 16657 TMT1-2 138.71 85.241 314.61 582.26 370.67 380.57 499.5 449.46 298 573 392 377 509 435 4 4 4 4 4 4 155050 6680 1632 6620 10514;10515;10516;10517 13671;13672;13673;13674 13672 4 GEGPEVDVTLPK Unmodified 1239.6347 0.63468237 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 55.166 55.166 2 2.768E-07 16306 TMT1-3 125.74 83.631 85.042 85.806 61.453 74.089 108.34 66.199 80 87 65 73 109 65 1 1 1 1 1 1 11143 6681 1632 6621 10518 13675 13675 1 GEGQLGPAER Unmodified 1012.4938 0.49377221 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 2 0 1 31.037 31.037 3 0.010618 7393 TMT1-1 63.624 54.192 23.248 28.689 35.833 28.735 43.942 22.198 22 29 36 29 44 22 1 1 1 1 1 1 2178 6682 685 6622 10519 13676 13676 1 GEGTGVLGSLSLPLSELLVADQLCLDR Unmodified 2811.4688 0.4688096 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 98.237 98.237 3;4 2.3561E-05 32570 TMT1-5 56.416 49.693 11.633 29.792 16.73 20.195 0 7.462 11 29 18 19 0 7 2 3 3 2 0 1 4259.1 6683 2525 6623 10520;10521 13677;13678;13679 13677 3 GEGTSAHLR Unmodified 926.45699 0.45699277 1638 Q10588 BST1 ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 20.785 20.785 3 0.010904 3628 TMT1-1 65.305 36.793 31.968 45.521 12.185 39.485 12.241 46.555 30 45 14 37 14 44 2 3 2 3 2 3 1905.2 6684 1638 6624 10522;10523 13680;13681;13682 13680 3 GEHPGLSIGDVAK Unmodified 1278.6568 0.65681479 588 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 0 5 0 1 44.601 44.601 3 0.00023428 11930 TMT1-4 86.944 52.26 122.83 176.88 125.69 108.3 178.16 180.4 116 176 131 109 181 174 1 1 1 1 1 1 39524 6685 588 6625 10524 13683 13683 1 GEHTLQVK Unmodified 910.48723 0.48723027 16 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 31.983 31.983 3 0.00018434 6856 TMT1-4 96.492 56.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6686 16 6626 10525 13684 13684 1 GEIAEAYAELIK Unmodified 1305.6816 0.68163256 1671 Q13107-2;Q13107 USP4 Ubiquitin carboxyl-terminal hydrolase 4 yes no 0 0 0 0 0 5 0 1 70.725 70.725 3 1.0844E-07 22107 TMT1-4 121.02 62.347 38.154 43.527 42.824 44.447 58.118 45.246 36 44 44 44 59 44 1 1 1 1 1 1 8568.3 6687 1671 6627 10526 13685 13685 1 GEIAGPPDTPYEGGR Unmodified 1514.7001 0.70013617 1376 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 2 0 1 45.122 45.122 3 0.00081975 13052 TMT1-1 70.529 58.552 107.12 161.8 72.737 80.261 151.21 119.34 101 160 80 80 152 116 2 2 2 2 2 2 13798 6688 1376 6628 10527 13686;13687 13687 2 GEILVIIEKPEEQWWSAR Unmodified 2182.1423 0.14225415 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 1 7 0 1 77.245 77.245 3 0.0016158 24194 TMT1-6 60.528 30.636 61.665 64.315 41.098 52.537 40.209 99.057 58 65 44 51 44 94 1 1 1 1 1 1 10969 6689 1127 6629 10528 13688 13688 1 GEILWSHLELLR Unmodified 1464.8089 0.80889876 1604 Q06546 GABPA GA-binding protein alpha chain yes yes 0 0 0 0 0 8 0 1 67.799 67.799 3 0.0033611 20609 TMT1-7 67.997 44.146 108.3 99.41 108.62 62.967 85.264 82.847 102 102 109 65 87 80 1 1 1 1 1 1 8410.5 6690 1604 6630 10529 13689 13689 1 GEITPELLGVMR Unmodified 1313.7013 0.70132214 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 5.5 0.5 1 1 66.282 66.282 2 0.00037493 20406 TMT1-4 77.379 65.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6691 785 6631 10530;10531 13690;13691 13690 2 GELANEVK Unmodified 858.4447 0.44469675 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.75 0.829 2 1 1 41.247 41.247 2;3 0.0005224 11711 TMT1-2 116.52 33.516 2091.6 2685.1 2728 1945.5 3035.9 2409.9 1977 2699 2760 1981 3067 2342 4 4 4 4 4 4 283790 6692 1019 6632 10532;10533;10534;10535 13692;13693;13694;13695;13696 13694 5 GELFWDDGESLEVLER Unmodified 1892.8792 0.87922275 627 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 0 0 0 3.5 0.5 1 1 77.829 77.829 3 8.7294E-05 26158 TMT1-2 78.326 55.523 14.577 45.223 36.509 21.323 29.074 38.612 14 44 36 22 30 37 2 2 1 2 2 2 4723.6 6693 627 6633 10536;10537 13697;13698 13697 2 GELHEQYR Unmodified 1030.4832 0.48320752 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 3 0 1 25.76 25.76 3 0.0044565 5601 TMT1-2 86.833 76.123 30.734 44.294 26.913 37.092 34.668 37.387 29 44 29 36 36 36 1 1 1 1 1 1 2800.7 6694 2223 6634 10538 13699 13699 1 GELIHVFNK Unmodified 1055.5764 0.57637963 2613 Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 0 8 0 1 52.342 52.342 3 0.0031653 14551 TMT1-7 80.239 56.283 153.24 178.18 243.72 125.35 175.94 222.04 145 181 241 131 181 213 1 1 1 1 1 1 16179 6695 2613 6635 10539 13700 13700 1 GELLEAIK Unmodified 871.50148 0.50148335 465 P04179-4;P04179;P04179-2 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 58.837 58.837 2 9.1304E-05 17485 TMT1-4 155.01 0 810.39 1148.8 1144.2 705.54 1284.3 1073.1 767 1149 1154 730 1294 1041 3 3 3 3 3 3 178310 6696 465 6636 10540;10541 13701;13702;13703 13701 3 GELLEAIKR Unmodified 1027.6026 0.60259438 465 P04179-4;P04179;P04179-2 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 1 5.33 3.09 1 1 1 51.732 51.732 3 0.00056605 14111 TMT1-7 112.75 32.51 3025.4 3895.5 3632.3 2742.2 3259 4229.6 2858 3910 3700 2763 3375 4055 5 5 5 5 5 5 559720 6697 465 6637 10542;10543;10544 13704;13705;13706;13707;13708 13707 5 GELPDFQDGTK Unmodified 1205.5564 0.55643205 46 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 0 4 0 2 53.393 53.393 2;3 0.00043171 15639 TMT1-3 93.959 85.163 214.92 304.07 228.8 235.11 256.85 247.44 203 303 239 232 264 239 2 2 2 2 2 2 28085 6698 46 6638 10545;10546 13709;13710 13710 2 GELQNWPDLLPK Unmodified 1408.7351 0.73506511 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 72.043 72.043 3 0.00018048 22798 TMT1-5 93.011 80.45 107.09 122.84 112.28 119.37 96.801 128.36 101 124 116 117 102 123 2 2 2 2 2 2 16265 6699 2336 6639 10547;10548 13711;13712 13711 2 GELSGDFEK Unmodified 980.44509 0.44509068 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 3 1 1 1 48.296 48.296 2;3 0.0020824 14347 TMT1-1 87.913 42.578 168.71 337.25 212.88 213.01 261.74 286.75 160 331 225 211 269 276 2 2 2 2 2 2 156750 6700 555 6640 10549;10550 13713;13714 13713 2 GELSGHFEDLLLAIVNCVR Unmodified 2141.0939 0.093923745 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 8 0 1 91.831 91.831 3 1.2633E-09 29794 TMT1-7 94.203 49.952 0 14.802 5.6343 23.608 5.4375 23.297 0 14 7 22 7 22 0 1 1 1 1 1 2829.4 6701 670 6641 10551 13715 13715 1 GELTGEVR Unmodified 859.43995 0.43994572 1771 Q14315-2;Q14315 FLNC Filamin-C yes no 0 0 0 0 0 2.5 0.5 1 1 33.702 33.702 2 0.0043746 8572 TMT1-1 125.5 0 314.71 473.52 446.81 250.83 415.41 391.09 298 472 451 261 421 378 3 3 3 3 3 3 86363 6702 1771 6642 10552;10553 13716;13717;13718 13717 3 GELVGGLDIVK Unmodified 1098.6285 0.62847478 321 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 0 5.5 0.5 1 1 63.636 63.636 2 9.2745E-07 19479 TMT1-5 143.96 123.09 131.31 190.05 131.04 139.42 191.62 203.47 124 189 138 138 196 196 2 2 2 2 2 2 25453 6703 321 6643 10554;10555 13719;13720 13720 2 GELVVSLK Unmodified 843.50657 0.50656873 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 7 0 1 55.942 55.942 2 0.0020906 15861 TMT1-6 138.54 47.285 281.94 228.58 210.15 310.62 252.88 444.77 265 236 221 300 270 424 1 1 1 1 1 1 28546 6704 2378 6644 10556 13721 13721 1 GELYCLPCHDK Unmodified 1390.601 0.60095617 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 0 5 0 1 44.782 44.782 3 4.6048E-06 11907 TMT1-4 117.79 71.877 488.41 695.84 640.61 463.41 644.59 712.88 462 695 652 470 660 686 2 2 2 2 2 2 74622 6705 1149;2097 6645 10557 13722;13723 13722 2 GEMMDLQHGSLFLQTPK Unmodified 1930.9281 0.92810397 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 7 0 1 63.575 63.575 3 2.8408E-14 18885 TMT1-6 99.044 78.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6706 527 6646 10558 13724 13724 1 GENLEHLR Unmodified 966.48829 0.4882929 2548 Q9BV40 VAMP8 Vesicle-associated membrane protein 8 yes yes 0 0 0 0 0 2.5 0.5 1 1 31.102 31.102 3 0.00027591 7725 TMT1-2 142.04 39.579 215.55 197.89 213.44 212.76 215.17 303 203 203 218 210 225 290 2 2 2 2 2 2 30250 6707 2548 6647 10559;10560 13725;13726 13726 2 GENLVSMTVEGPPPK Unmodified 1553.7759 0.77594365 709 P14678-2;P63162;P14678;P63162-2;P14678-3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 0 5 0 1 57.974 57.974 4 0.044031 17086 TMT1-4 35.329 14.666 68.811 102.72 69.902 57.777 77.111 113.99 65 102 73 58 80 109 1 1 1 1 1 1 4893.1 6708 709 6648 10561 13727 13727 1 GEPDPIVLTPGTYGLSNALLETPWR Unmodified 2695.3857 0.38573189 2014 Q6ICL3-3;Q6ICL3;Q6ICL3-4;Q6ICL3-5 TANGO2 Transport and Golgi organization protein 2 homolog yes no 0 0 0 0 0 6 0 1 86.311 86.311 3 2.313E-05 28351 TMT1-5 60.8 55.08 7.3634 22.82 5.4763 15.521 29.1 15.16 7 22 7 15 29 15 1 1 1 1 1 1 8706.7 6709 2014 6649 10562 13728 13728 1 GEPPLPEEDLSK Unmodified 1309.6402 0.64016167 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 2.5 0.5 1 1 52.942 52.942 3 0.00012717 16325 TMT1-2 96.745 83.331 215.92 336.18 213.79 188.55 222.81 326.23 204 333 225 188 232 312 4 4 4 4 4 4 15799 6710 145 6650 10563;10564 13729;13730;13731;13732 13731 4 GEPWTFLVR Unmodified 1103.5764 0.57637963 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 8 0 1 67.956 67.956 2 8.8859E-07 20642 TMT1-7 166.52 128.38 484.86 644.24 559.03 470.14 603.15 661.83 458 645 574 471 619 637 2 2 2 2 2 2 100630 6711 936 6651 10565 13733;13734 13733 2 GEQQPISSPWDVVFGTSGSEVQR Unmodified 2489.1823 0.18228106 2197 Q8NBF2 NHLRC2 NHL repeat-containing protein 2 yes yes 0 0 0 0 0 6 0 1 73.98 73.98 3 0.001285 23622 TMT1-5 49.765 41.451 15.82 29.433 21.309 14.582 28.887 22.628 15 29 22 15 29 22 1 1 1 1 1 1 8679.5 6712 2197 6652 10566 13735 13735 1 GEQSAGENSLEDLTK Unmodified 1576.7217 0.72165947 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 51.052 51.052 3 4.8589E-06 15609 TMT1-2 99.451 88.172 92.958 138.4 129.15 85.687 90.743 106.14 88 138 131 87 94 102 2 2 2 2 2 2 15221 6713 2911 6653 10567;10568 13736;13737 13737 2 GESDPAYQQYQDAANNLR Unmodified 2038.8981 0.89806071 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3 0 1 50.906 50.906 3 2.8308E-14 15587 TMT1-2 122.14 104.42 23.213 36.147 35.385 28.766 43.684 29.667 22 36 36 29 44 29 1 1 1 1 1 1 16638 6714 686 6654 10569 13738 13738 1 GESEDDFWWCIDR Unmodified 1713.6729 0.67293514 210 O43865-2;O43865;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 0 0 0 0 0 3.5 0.5 1 1 71.054 71.054 2 2.0983E-05 23555 TMT1-2 110.84 98.207 31.576 73.798 40.701 52.083 65.61 30.108 30 72 44 51 66 30 2 2 2 2 2 2 7920.4 6715 210 6655 10570;10571 13739;13740 13739 2 GESFYQDR Unmodified 1000.425 0.42502394 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3 0 1 36.385 36.385 2 0.031844 9889 TMT1-2 80.455 37.208 53.843 111.45 53.516 51.22 70.89 90.719 51 109 58 51 73 87 1 1 1 1 1 1 9333.6 6716 1296 6656 10572 13741 13741 1 GESLSLPGPSPPPDGTEQVIISR Unmodified 2332.1911 0.19105483 2589 Q9BZQ8 FAM129A Protein Niban yes yes 0 0 0 0 0 4 0 1 63.235 63.235 3 0.0018082 19503 TMT1-3 47.744 24.182 38.168 51.121 34.066 36.508 43.071 37.147 36 51 36 36 44 36 1 1 1 1 1 1 6940.7 6717 2589 6657 10573 13742 13742 1 GESPVDYDGGR Unmodified 1150.4891 0.48908076 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 2.5 0.5 1 1 36.433 36.433 2 1.3675E-16 9638 TMT1-1 183.72 117.29 300.07 365.34 294.16 278.86 338.51 338.92 283 367 305 277 347 327 3 3 3 3 3 3 62004 6718 1827 6658 10574;10575 13743;13744;13745 13744 3 GETAVPGAPEALR Unmodified 1266.6568 0.65681479 12 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 0 0 0 3 0 1 45.091 45.091 2 3.9834E-08 13325 TMT1-2 126.66 63.093 37.89 89.204 48.409 27.606 64.112 75.989 36 87 51 29 65 73 1 1 1 1 1 1 10639 6719 12 6659 10576 13746 13746 1 GETESEEFEK Unmodified 1183.4881 0.48807771 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 2 0 1 41.194 41.194 3 3.3889E-05 11389 TMT1-1 131.52 102.56 69.068 48.389 72.827 65.261 76.767 114 65 51 73 65 80 109 1 1 1 1 1 1 16741 6720 1597 6660 10577 13747 13747 1 GETVPLDVLQIK Unmodified 1310.7446 0.74456717 1949 Q53H12 AGK Acylglycerol kinase, mitochondrial yes yes 0 0 0 0 0 6 0 1 69.414 69.414 3 2.4861E-05 21785 TMT1-5 103.91 49.302 77.024 116.21 120.83 109.96 105.08 113.2 73 116 123 109 109 109 1 1 1 1 1 1 16518 6721 1949 6661 10578 13748 13748 1 GEVAPDAK Unmodified 785.39193 0.3919329 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 2.5 0.5 1 1 34.181 34.181 2 0.0058689 8912 TMT1-2 112.94 48.105 562.43 662.49 491.1 601.51 807.03 427.89 530 666 518 591 812 423 2 2 2 2 2 2 85495 6722 586 6662 10579;10580 13749;13750 13750 2 GEVEQLDSR Unmodified 1031.4884 0.48835248 2039 Q6PJW8;Q6PJW8-2;Q6PJW8-3 CNST Consortin yes no 0 0 0 0 0 2 0 1 35.48 35.48 2 0.0016338 9155 TMT1-1 116.52 86.2 91.981 76.146 165.78 51.792 91.532 128.51 87 80 160 58 94 123 1 1 1 1 1 1 14268 6723 2039 6663 10581 13751 13751 1 GEVFNELVGK Unmodified 1090.5659 0.56587452 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 6 0 1 61.966 61.966 2 2.1404E-06 18832 TMT1-5 159.83 93.568 444.69 580.72 510.93 498.26 480.67 566.19 420 582 527 492 500 544 2 2 2 2 2 2 79972 6724 500 6664 10582 13752;13753 13752 2 GEVFSVLEFAPSNHSFK Unmodified 1893.9261 0.92611336 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 8 0 1 68.892 68.892 4 0.008865 21079 TMT1-7 48.547 28.44 92.799 62.234 40.017 76.072 70.81 59.807 87 65 44 73 73 58 1 1 1 1 1 1 6515 6725 2594 6665 10583 13754 13754 1 GEVIHCK Unmodified 841.41162 0.41162248 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 5 0 1 30.147 30.147 3 0.009604 6144 TMT1-4 81.958 37.823 200.87 203.09 152.36 169.78 194.89 189.52 189 206 160 167 200 183 1 1 1 1 1 1 13909 6726 288 6666 10584 13755 13755 1 GEVLGDVLQLETLK Unmodified 1512.8399 0.83992412 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 6 0 1 78.01 78.01 3 0.0017346 25191 TMT1-5 66.285 44.526 37.875 74.052 63.751 43.656 33.817 53.401 36 73 65 44 36 51 1 1 1 1 1 1 5066.1 6727 1805 6667 10585 13756 13756 1 GEVNAADAFDIGSFDEEDTK Unmodified 2128.9073 0.90728799 881 P25098;P35626 ADRBK1;ADRBK2 Beta-adrenergic receptor kinase 1;Beta-adrenergic receptor kinase 2 yes no 0 0 0 0 0 3 0 1 69.604 69.604 3 7.8709E-19 22955 TMT1-2 102.45 91.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6728 881 6668 10586 13757 13757 1 GEVPCTVTSASPLEEATLSELK Unmodified 2317.1359 0.13590772 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 4.33 0.471 2 1 70.917 70.917 3;4 3.3966E-46 22471 TMT1-3 163.53 145.67 284.58 414.73 329.7 314.77 409.03 491.48 269 413 342 313 421 472 6 6 6 6 6 6 81056 6729 1148 6669 10587;10588;10589 13758;13759;13760;13761;13762;13763 13760 6 GEVQTCSER Unmodified 1064.4557 0.45567214 2657 Q9H7M9 C10orf54 Platelet receptor Gi24 yes yes 0 0 0 0 0 2 0 1 23.63 23.63 2 0.0098907 4488 TMT1-1 89.08 35.913 15.705 14.003 53.693 12.783 21.897 15.365 15 15 51 15 22 15 1 1 1 1 1 1 2739.4 6730 2657 6670 10590 13764 13764 1 GEVQVSDKER Unmodified 1145.5677 0.56766543 2989 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 1 3.5 0.5 1 1 30.81 30.81 3 0.0037265 7685 TMT1-2 83.226 18.929 223.43 320.52 228.85 210.76 272.62 246.99 211 319 239 210 278 239 2 2 2 2 2 2 22207 6731 2989 6671 10591;10592 13765;13766 13765 2 GEVVNYSDSR Unmodified 1124.5098 0.5098162 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 2.5 0.5 1 1 35.248 35.248 2 0.00023475 9128 TMT1-1 127.51 103.75 53.851 80.175 78.58 65.05 69.756 74.761 51 80 80 65 72 72 2 2 2 2 2 2 8102.5 6732 2563 6672 10593;10594 13767;13768 13767 2 GEWCGVELDEPLGK Unmodified 1587.7239 0.72390808 965;2851 Q9UDT6-2;Q9UDT6;P30622-2;P30622-1;P30622 CLIP2;CLIP1 CAP-Gly domain-containing linker protein 2;CAP-Gly domain-containing linker protein 1 no no 0 0 0 0 0 4 0 1 65.737 65.737 3 9.9844E-05 20379 TMT1-3 85.837 65.456 46.542 65.062 57.394 27.474 42.68 60.61 44 65 58 29 44 58 1 1 1 1 1 1 9013.8 6733 2851;965 6673 10595 13769 13769 1 GEWTCIAYSQLR Unmodified 1482.6925 0.69254837 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16;P02751-2 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 60.277 60.277 2 4.6653E-10 17586 TMT1-6 131.83 97.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6734 442 6674 10596 13770 13770 1 GEYEEHLGILGPIIR Unmodified 1694.8992 0.89917033 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 5 0 1 61.13 61.13 3 9.2772E-16 18311 TMT1-4 140.82 130.36 100.38 168.95 117.95 125.2 117.68 152.28 95 167 124 123 123 146 2 2 2 2 2 2 52050 6735 666 6675 10597 13771;13772 13771 2 GEYFWEK Unmodified 957.42323 0.42323303 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 57.933 57.933 3 0.012491 17255 TMT1-5 77.058 55.685 107.78 192.96 115.76 116.95 156.28 166.1 102 190 123 116 160 160 1 1 1 1 1 1 17121 6736 471 6676 10598 13773 13773 1 GEYNVYSTFQSHEPEFDYLK Unmodified 2452.0859 0.085921059 1472 P63151;P63151-2;Q00005-6;Q00005;Q00005-2;Q00005-3;Q66LE6;Q00005-4;Q00005-5;Q00005-7 PPP2R2A;PPP2R2B;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 0 0 0 0 0 5 0 1 65.955 65.955 3 8.9727E-07 20279 TMT1-4 80.156 72.963 23.255 44.897 20.993 0 36.374 37.338 22 44 22 0 36 36 1 1 1 0 1 1 9439.3 6737 1472 6677 10599 13774 13774 1 GEYTLVVK Unmodified 907.50148 0.50148335 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 0 2 51.391 51.391 2;3 0.0015331 14674 TMT1-5 141.47 120.56 519.04 678.16 556 415.69 660 632.49 490 679 571 422 670 611 2 2 2 2 2 2 58879 6738 831 6678 10600;10601 13775;13776 13775 2 GFAFVQYVNER Unmodified 1328.6513 0.65133548 547 P07910-2;P07910-4;P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 0 7.5 0.5 1 1 62.051 62.051 2 8.8495E-07 18314 TMT1-7 144.47 132.84 393.08 571.9 355.66 358.19 458.71 600.93 371 568 377 355 474 576 4 4 4 4 4 4 141810 6739 547 6679 10602;10603 13777;13778;13779;13780 13779 4 GFAFVTFDDHDSVDK Unmodified 1698.7526 0.75256567 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 5.33 0.471 2 1 63.399 63.399 3;4 3.4571E-17 19375 TMT1-5 143.93 104.71 307.41 583.64 317.33 338.24 478.65 473.5 291 573 341 335 488 457 3 3 3 3 3 3 69583 6740 601 6680 10604;10605;10606 13781;13782;13783 13783 3 GFAFVTFDDHDTVDKIVVQK Unmodified 2280.1426 0.14264808 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 7 0 1 68.017 68.017 4 9.3074E-24 20621 TMT1-6 137.44 41.672 92.569 92.893 52.689 90.391 82.941 113.83 87 94 58 87 87 109 1 1 1 1 1 1 5305.7 6741 1259 6681 10607 13784 13784 1 GFAFVTFESPADAK Unmodified 1485.714 0.71399532 1056 P38159;Q96E39;P38159-3;O75526;Q8N7X1 RBMX;RBMXL1;RBMXL2;RBMXL3 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3 yes no 0 0 0 0 0 7 0 1 70.584 70.584 3 1.0796E-15 21580 TMT1-6 141.38 86.857 221.22 423.21 332.53 222.73 354.01 419.5 210 417 341 228 362 403 2 2 2 2 2 2 59457 6742 1056 6682 10608 13785;13786 13785 2 GFAFVYFENVDDAK Unmodified 1620.746 0.74602373 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 0 6.5 0.5 1 1 75.814 75.814 3 3.0426E-15 24364 TMT1-5 139.89 120.05 174.81 339.09 269.2 208.55 262.46 271.8 166 334 277 210 269 262 4 4 4 4 4 4 36836 6743 1465 6683 10609;10610 13787;13788;13789;13790 13788 4 GFAYVQFEDVRDAEDALHNLDR Unmodified 2579.2041 0.20407913 282 O75494-5;O75494-4;O75494-6;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 0 0 1 4 0 1 70.732 70.732 4 0.0035727 22409 TMT1-3 45.413 23.814 15.779 29.32 28.232 29.346 35.537 22.438 15 29 29 29 36 22 1 1 1 1 1 1 6342.5 6744 282 6684 10611 13791 13791 1 GFCFITFK Unmodified 1018.4946 0.49462383 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 9 0 1 70.608 70.608 3 0.0010413 19916 TMT1-8 121.52 85.576 46.337 80.681 78.633 64.047 122.91 81.773 44 80 80 65 123 80 1 1 1 1 1 1 8173.5 6745 1748 6685 10612 13792 13792 1 GFCFLEYEDHK Unmodified 1443.6129 0.61290107 226;227;170 O43390;O43390-3;O43390-2;O43390-4;O60506-2;O60506;O60506-3;O60506-4;O60506-5 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 5.5 0.5 1 1 58.012 58.012 3 4.1708E-08 17393 TMT1-5 152.54 138.63 392.01 452.17 457.37 519.69 441.18 590.77 370 457 471 508 464 566 4 4 4 4 4 4 64738 6746 170;226;227 6686 10613;10614 13793;13794;13795;13796 13796 4 GFCVPLCAQECVHGR Unmodified 1788.7858 0.7858136 1993 Q5VY43 PEAR1 Platelet endothelial aggregation receptor 1 yes yes 0 0 0 0 0 7 0 1 48.71 48.71 3 8.0809E-15 13007 TMT1-6 130.19 108.53 30.397 66.023 65.024 26.738 57.629 52.722 29 65 65 29 58 51 1 1 1 1 1 1 11303 6747 1993 6687 10615 13797 13797 1 GFCYVEFDEVDSLK Unmodified 1706.7498 0.74978848 1822 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 0 5 0 1 72.644 72.644 3 3.4338E-10 22867 TMT1-4 117.41 99.919 138.58 192.1 170.31 128.83 223.67 198.29 131 192 174 131 226 192 1 1 1 1 1 1 36909 6748 1822 6688 10616 13798 13798 1 GFDILGIKPVQR Unmodified 1341.7769 0.77687035 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 9 0 1 61.5 61.5 3 0.0048637 16290 TMT1-8 60.161 43.828 99.357 121.67 149.76 155.01 116.86 136.31 94 123 152 152 123 131 1 1 1 1 1 1 10871 6749 1296 6689 10617 13799 13799 1 GFDQTINLILDESHER Unmodified 1885.917 0.91700524 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 0 5 0 1 70.614 70.614 3 8.7011E-16 22064 TMT1-4 130.39 126.97 61.438 72.318 72.434 42.714 56.381 67.681 58 73 73 44 58 65 1 1 1 1 1 1 16699 6750 368 6690 10618 13800 13800 1 GFDTTAINK Unmodified 965.48181 0.48181054 1755 Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155 ARHGEF7 Rho guanine nucleotide exchange factor 7 yes no 0 0 0 0 0 6 0 1 48.096 48.096 2 0.0079237 13401 TMT1-5 91.783 68.226 92.27 115.81 83.496 72.395 128.52 150.9 87 116 87 73 131 145 1 1 1 1 1 1 7447.6 6751 1755 6691 10619 13801 13801 1 GFDWPLLVK Unmodified 1073.591 0.59096706 559 P08236;P08236-2;P08236-3 GUSB Beta-glucuronidase yes no 0 0 0 0 0 9 0 1 77.577 77.577 2 0.0058409 22643 TMT1-8 82.426 35.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6752 559 6692 10620 13802 13802 1 GFEAAVAAGAK Unmodified 990.51345 0.51344502 1032 P35914 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 0 0 0 0 0 6 0 1 49.228 49.228 2 7.5368E-05 13716 TMT1-5 114.5 90.939 115.78 130.11 88.04 118.47 163.03 180.83 109 131 94 116 167 174 1 1 1 1 1 1 25492 6753 1032 6693 10621 13803 13803 1 GFELTFK Unmodified 840.43815 0.43815481 1063 P39656;P39656-3 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 7.5 0.5 1 1 62.768 62.768 2 0.0027622 18508 TMT1-6 89.142 50.324 284.09 337.64 297.18 274.34 220.89 449.94 268 340 306 271 238 428 1 1 1 1 1 1 33069 6754 1063 6694 10622;10623 13804;13805 13804 2 GFEPTLEALFGK Unmodified 1307.6762 0.67615325 463 P04114;CON__ENSEMBL:ENSBTAP00000032840 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes no 0 0 0 0 0 7 0 1 82.17 82.17 3 0.00021891 26150 TMT1-6 91.313 73.877 38.222 27.529 44.841 20.713 35.128 45.902 36 29 44 22 36 44 1 1 1 1 1 1 3175.3 6755 463 6695 10624 13806 13806 1 GFESPSDNSSAMLLQWHEK Unmodified 2161.9739 0.97386819 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 0 6 0 2 61.137 61.137 3;4 1.4859E-24 18523 TMT1-5 141.6 133.42 207.76 283.98 186.86 159.88 205.62 225.45 196 283 196 160 211 217 2 2 2 2 2 2 72422 6756 150 6696 10625;10626 13807;13808 13808 2 GFEVVYMTEPIDEYCVQQLK Unmodified 2447.1389 0.13888461 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 5.33 0.471 2 1 78.112 78.112 3;4 8.1883E-14 25195 TMT1-5 112.3 16.532 154.32 241.81 187.94 222.96 218.64 218.69 146 240 197 218 226 211 4 4 4 4 4 4 43028 6757 561 6697 10627;10628;10629 13809;13810;13811;13812 13812 4 GFFADYEIPNLQK Unmodified 1540.7562 0.75619449 1638 Q10588;Q10588-2 BST1 ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 yes no 0 0 0 0 0 7 0 1 73.059 73.059 3 5.3452E-05 22616 TMT1-6 98.353 77.103 46.052 111.19 100.67 62.569 131.61 74.063 44 109 102 65 131 73 1 1 1 1 1 1 16773 6758 1638 6698 10630 13813 13813 1 GFFDPNTEENLTYLQLMER Unmodified 2316.0732 0.073247883 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5.5 0.5 1 1 81.272 81.272 3 2.1838E-17 26254 TMT1-4 119.38 90.797 30.772 35.765 27.756 29.66 20.352 37.795 29 36 29 29 22 36 1 1 1 1 1 1 10391 6759 1833 6699 10631;10632 13814;13815 13814 2 GFFDPNTHENLTYLQLLER Unmodified 2306.1331 0.13314602 1833;1346 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;P58107 PLEC;EPPK1 Plectin;Epiplakin no no 0 0 0 0 0 6.5 0.5 1 1 73.225 73.225 3 3.4165E-13 23252 TMT1-5 107.69 93.218 68.628 133.51 74.59 81.116 99.879 89.892 65 131 80 80 102 87 2 2 2 2 2 2 29462 6760 1833;1346 6700 10633;10634 13816;13817 13816 2 GFFEGTIASK Unmodified 1055.5288 0.52876073 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 7.5 0.5 1 1 58.545 58.545 2 4.4566E-05 17041 TMT1-7 113.1 63.673 161 246.36 143.41 122.56 177.09 283.83 152 244 152 123 184 271 1 1 1 1 1 1 19504 6761 1287 6701 10635;10636 13818;13819 13819 2 GFFELFPSLSHNLLVD Unmodified 1833.9301 0.93013611 2908 Q9ULA0 DNPEP Aspartyl aminopeptidase yes yes 0 0 0 0 0 8 0 1 94.283 94.283 3 2.1844E-05 30636 TMT1-7 84.759 81.139 23.377 30.127 12.939 30.662 14.039 7.0614 22 30 15 29 15 7 1 1 1 1 1 1 5315 6762 2908 6702 10637 13820 13820 1 GFFGGLETK Unmodified 954.48108 0.48108226 218 O60268-2;O60268-3;O60268 KIAA0513 Uncharacterized protein KIAA0513 yes no 0 0 0 0 0 8 0 1 60.405 60.405 2 0.0017359 17715 TMT1-7 114.28 95.501 191.89 258.7 171.88 216.32 157.59 330.23 181 258 183 210 171 314 1 1 1 1 1 1 14816 6763 218 6703 10638 13821 13821 1 GFFHGVR Unmodified 818.41876 0.41875677 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 36.943 36.943 3 0.0054215 7038 TMT1-8 86.113 66.636 69.096 72.213 47.85 59.511 54.803 91.178 65 73 51 58 58 87 1 1 1 1 1 1 5016.7 6764 1280 6704 10639 13822 13822 1 GFFLVQTK Unmodified 938.52255 0.52255314 296 O75695 RP2 Protein XRP2 yes yes 0 0 0 0 0 9 0 1 62.532 62.532 3 0.0018051 16725 TMT1-8 86.472 50.979 61.123 134.04 73.153 113.51 67.219 114.28 58 131 80 109 73 109 1 1 1 1 1 1 9441 6765 296 6705 10640 13823 13823 1 GFFSSLK Unmodified 784.41194 0.41194006 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 59.399 59.399 2 0.020106 15441 TMT1-8 94.887 27.13 107.92 152.32 127.21 108.89 141.75 143.06 102 152 131 109 145 138 1 1 1 1 1 1 18579 6766 2791 6706 10641 13824 13824 1 GFGDLAVLK Unmodified 918.51747 0.51746776 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 7 0 1 64.906 64.906 2 0.0011412 19397 TMT1-6 123.72 58.101 153.31 286.3 140.28 139.84 139.97 153.77 145 281 152 138 145 148 1 1 1 1 1 1 14679 6767 44 6707 10642 13825 13825 1 GFGFGLVK Unmodified 823.45922 0.4592246 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 9 0 1 63.846 63.846 2 1.8861E-05 17306 TMT1-8 163.41 127.22 734.63 996.12 842.6 767.47 865.14 1133 694 996 869 763 898 1086 2 2 2 2 2 2 164110 6768 1119 6708 10643 13826;13827 13827 2 GFGFGQGAGALVHSE Unmodified 1432.6735 0.67352749 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 6 0 2 58.397 58.397 2;3 5.0961E-22 17512 TMT1-5 173.28 140.55 176.37 214.11 292.19 200.68 259.14 348.65 167 217 291 204 268 334 3 3 3 3 3 3 150080 6769 830 6709 10644;10645 13828;13829;13830 13829 3 GFGFILFK Unmodified 927.52182 0.52182486 2487 Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 0 9 0 1 78.214 78.214 2 0.0010599 22900 TMT1-8 149.94 103.37 373.45 533.49 441.48 428.77 444.14 717.54 353 532 457 424 467 685 2 2 2 2 2 2 54509 6770 2487 6710 10646 13831;13832 13832 2 GFGFITFTNPEHASVAMR Unmodified 1980.9516 0.9516166 1531 P98179 RBM3 RNA-binding protein 3 yes yes 0 0 0 0 0 9 0 1 63.977 63.977 3 2.4815E-20 17288 TMT1-8 132.51 115.23 54.14 49.68 55.807 82.946 62.117 60.055 51 51 58 80 65 58 1 1 1 1 1 1 17022 6771 1531 6711 10647 13833 13833 1 GFGFVCFSSPEEATK Unmodified 1661.7396 0.73955814 662;2634 P11940-2;P11940;Q4VXU2;Q13310-2;Q13310;Q13310-3;Q9H361 PABPC1;PABPC1L;PABPC4;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4;Polyadenylate-binding protein 3 no no 0 0 0 0 0 7 0 2 67.639 67.639 2;4 1.1841E-16 20526 TMT1-6 147.62 126.07 84.451 161.87 96.312 87.877 136.45 112.3 80 159 102 88 138 109 2 2 2 2 2 2 11393 6772 662;2634 6712 10648;10649 13834;13835 13835 2 GFGFVDFNSEEDAK Unmodified 1560.6733 0.67325272 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 5 0 1 67.293 67.293 3 8.2622E-11 20814 TMT1-4 126.63 102.7 390.01 519.65 374.79 363.76 508.67 539.8 368 519 392 362 520 520 2 2 2 2 2 2 102580 6773 786 6713 10650 13836;13837 13837 2 GFGFVLFK Unmodified 913.50617 0.5061748 1748;120 Q14103-3;Q14103;O14979-3;O14979-2;O14979 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 0 9 0 2 75.413 75.413 2;3 1.8861E-05 21890 TMT1-8 163.41 98.545 459.03 818.47 424.58 511.8 499.58 697.83 434 805 461 500 523 668 2 2 2 2 2 2 367090 6774 1748;120 6714 10651;10652 13838;13839 13839 2 GFGFVSFER Unmodified 1044.5029 0.50288033 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 0 8 0 1 62.794 62.794 2 6.6699E-09 18611 TMT1-7 173.73 120.05 139.18 143.04 111.01 117.08 164.16 149.89 131 145 116 116 167 145 1 1 1 1 1 1 24427 6775 662;2634 6715 10653 13840 13840 1 GFGFVTFADPASVDK Unmodified 1556.7511 0.75110911 2393 Q96DH6;Q96DH6-2 MSI2 RNA-binding protein Musashi homolog 2 yes no 0 0 0 0 0 7 0 1 73.846 73.846 3 9.5096E-06 22926 TMT1-6 74.789 51.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6776 2393 6716 10654 13841 13841 1 GFGFVTFDDHDPVDK Unmodified 1694.7577 0.75765105 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 4 2.16 1 1 1 64.276 64.276 3 1.0966E-10 19541 TMT1-4 121.99 105.24 1603.2 2370.4 1756.6 1593.3 2238 2055.3 1515 2357 1828 1592 2277 1988 4 4 4 4 4 4 381720 6777 848 6717 10655;10656;10657 13842;13843;13844;13845 13843 4 GFGFVTFDDHDPVDKIVLQK Unmodified 2276.1477 0.14773345 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 7.5 0.5 1 1 71.49 71.49 4 1.3644E-30 21976 TMT1-6 142.3 120.08 435.15 818.25 470.5 431.33 390.44 937.6 412 804 500 427 423 890 3 3 3 3 3 3 62537 6778 848 6718 10658;10659 13846;13847;13848 13846 3 GFGFVTFSSMAEVDAAMAAR Unmodified 2063.9445 0.94448232 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 8 0 1 83.916 83.916 3 0.00028399 26830 TMT1-7 60.826 44.703 54.018 64.449 63.924 50.895 55.199 91.167 51 65 65 51 58 87 2 2 2 2 2 2 6053.6 6779 848 6719 10660 13849;13850 13849 2 GFGFVTFSSMAEVDAAMAARPHSIDGR Unmodified 2826.3218 0.3217682 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 8 0 1 71.816 71.816 4 9.5568E-29 22163 TMT1-7 118.24 115.79 84.694 139.88 74.119 81.292 91.992 106.11 80 138 80 80 95 102 2 2 2 2 2 2 15343 6780 848 6720 10661 13851;13852 13851 2 GFGFVTYATVEEVDAAMNAR Unmodified 2146.9994 0.99935466 601 P09651-3;P09651-2;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 0 6.25 0.433 3 1 85.167 85.167 3 8.0701E-24 28038 TMT1-5 137.3 123.39 177.71 286.01 186.5 168.68 203.64 271.35 168 283 196 168 211 260 6 6 6 6 6 6 28043 6781 601 6721 10662;10663;10664;10665 13853;13854;13855;13856;13857;13858;13859;13860 13855 8 GFGFVTYATVEEVDAAMNARPHK Unmodified 2509.206 0.20599339 601 P09651-3;P09651-2;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 1 7.5 0.5 1 1 72.039 72.039 4 4.619E-23 22156 TMT1-6 123.43 100.56 198.81 323.47 215.35 196.81 243.89 371.47 188 320 226 196 254 355 3 3 3 3 3 3 33286 6782 601 6722 10666;10667 13861;13862;13863 13861 3 GFGFVYFQNHDAADK Unmodified 1714.774 0.77396981 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 0 7 0 1 59.165 59.165 3 1.9385E-06 17165 TMT1-6 102.5 74.856 200.04 310.87 200.56 205.81 218.97 414.82 189 308 212 203 232 395 1 1 1 1 1 1 25551 6783 1675 6723 10668 13864 13864 1 GFGGIGGILR Unmodified 945.5396 0.53960019 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 9 0 1 60.472 60.472 2 0.0014633 15881 TMT1-8 104.76 56.915 184.2 263.03 198.42 174.27 217.46 196.33 174 262 206 174 222 190 1 1 1 1 1 1 26241 6784 1439 6724 10669 13865 13865 1 GFGGITHGPPEK Unmodified 1195.5986 0.59857163 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 40.988 40.988 3 0.0049007 10433 TMT1-5 65.179 31.293 603.48 796.83 690.72 622.59 797.15 839.65 570 798 711 621 817 809 3 3 3 3 3 3 26159 6785 1194 6725 10670;10671 13866;13867;13868 13866 3 GFGGITHGPPEKK Unmodified 1323.6935 0.69353465 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 1 8 0 1 38.293 38.293 4 8.2295E-05 8981 TMT1-7 93.011 68.156 321.65 357.73 280.5 325.98 259.31 328.39 303 361 294 318 273 315 1 1 1 1 1 1 20605 6786 1194 6726 10672 13869 13869 1 GFGGIYGVGK Unmodified 953.49707 0.49706667 2215 Q8NDH3-3;Q8NDH3-2;Q8NDH3-5;Q8NDH3-4;Q8NDH3 NPEPL1 Probable aminopeptidase NPEPL1 yes no 0 0 0 0 0 9 0 1 55.82 55.82 2 0.0046083 14069 TMT1-8 79.116 46.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6787 2215 6727 10673 13870 13870 1 GFGGQYGIQK Unmodified 1053.5243 0.52434406 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 7.33 0.471 2 1 49.112 49.112 2;3 3.2857E-09 13195 TMT1-7 168.23 127.8 883.86 1147 700.56 894.19 737.74 1231.5 833 1145 752 869 785 1175 3 3 3 3 3 3 63098 6788 701 6728 10674;10675;10676 13871;13872;13873 13873 3 GFGHIGIAVPDVYSACK Unmodified 1789.8821 0.88214006 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 0 8 0 2 61.641 61.641 3;4 1.0744E-05 18169 TMT1-7 82.908 63.584 275.15 429.15 460.21 330.13 398.95 459.79 261 428 464 334 411 442 3 3 3 3 3 3 69947 6789 1586 6729 10677;10678 13874;13875;13876 13874 3 GFGQSVVQLQGSR Unmodified 1361.7052 0.70516197 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 8 0 1 49.871 49.871 3 0.00039075 13541 TMT1-7 81.185 35.213 68.721 93.836 92.513 72.241 108.13 74.732 65 94 94 73 109 73 1 1 1 1 1 1 12417 6790 647 6730 10679 13877 13877 1 GFGSDKEAILDIITSR Unmodified 1720.8996 0.89956426 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 7.5 0.5 1 1 73.672 73.672 3 1.0874E-15 22961 TMT1-7 133.96 106.31 952.51 1764.8 1081.8 993.04 1363.7 1815.9 902 1736 1143 991 1407 1740 4 4 4 4 4 4 184560 6791 555 6731 10680;10681 13878;13879;13880;13881 13881 4 GFGSEEGSR Unmodified 924.39372 0.39372381 3035 Q9Y5S9 RBM8A RNA-binding protein 8A yes yes 0 0 0 0 0 2 0 1 29.752 29.752 2 7.2415E-05 6891 TMT1-1 151.97 95.427 38.003 74.407 42.035 20.579 51.133 36.917 36 73 44 22 51 36 1 1 1 1 1 1 4912.5 6792 3035 6732 10682 13882 13882 1 GFGSLNDEGEGEFWLGNDYLHLLTQR Unmodified 2966.3835 0.38350006 437 P02671 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes yes 0 0 0 0 0 6 0 1 84.959 84.959 3 0.01632 27920 TMT1-5 36.311 29.662 23.417 21.604 13.434 6.7184 7.0134 0 22 22 14 7 7 0 1 1 1 1 1 0 2535.3 6793 437 6733 10683 13883 13883 1 GFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLR Unmodified 3774.9145 0.91449263 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 9 0 1 110.75 110.75 4 1.0905E-16 34284 TMT1-8 73.761 64.461 14.898 10.501 11.89 8.7341 20.963 17.524 14 11 12 9 21 17 2 2 2 2 2 2 10080 6794 1851 6734 10684 13884;13885 13884 2 GFGTDEQAIIDCLGSR Unmodified 1737.7992 0.79919829 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 4.5 0.5 1 1 67.631 67.631 3 0.00021599 21237 TMT1-3 76.049 58.971 139.17 166.74 93.272 143.34 102.73 136.71 131 167 102 138 109 131 2 2 2 2 2 2 24859 6795 1234 6735 10685;10686 13886;13887 13886 2 GFGTDEQAIVDVVANR Unmodified 1689.8322 0.83221298 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 4.5 0.5 1 1 67.564 67.564 3 4.1306E-18 21158 TMT1-3 142.91 136.47 138.28 226.87 191.68 136.53 153.26 228.01 131 225 196 138 160 218 3 3 3 3 3 3 78588 6796 804 6736 10687;10688 13888;13889;13890 13888 3 GFGTDFK Unmodified 770.3599 0.35990449 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 7 0 1 50.393 50.393 2 0.018963 13654 TMT1-6 98.418 5.9512 129.84 241.91 153.66 120.6 248.92 205.03 123 238 161 123 250 199 1 1 1 1 1 1 16252 6797 539 6737 10689 13891 13891 1 GFHQVPFAPIVFIER Unmodified 1755.9461 0.94606094 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 9 0 1 69.372 69.372 3 0.0034049 19437 TMT1-8 54.44 30.835 85.402 47.954 32.974 59.95 78.624 67.046 80 51 36 58 80 65 1 1 1 1 1 1 12595 6798 1146 6738 10690 13892 13892 1 GFIQVYVDQVDEDIVAVTR Unmodified 2165.1004 0.10044891 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 5 0 1 92.826 92.826 3 0.0047884 30711 TMT1-4 38.377 18.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6799 1018 6739 10691 13893 13893 1 GFITIVDVQR Unmodified 1146.6397 0.63970816 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 62.386 62.386 2 2.6736E-06 18465 TMT1-7 157.96 114.14 276.94 306.77 262.99 185.57 283.38 333.03 261 310 269 189 290 320 2 2 2 2 2 2 56005 6800 1112 6740 10692;10693 13894;13895 13895 2 GFKDQIYDIFQK Unmodified 1500.7613 0.76127986 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 1 8.5 0.5 2 2 68.29 68.29 3;4 7.3077E-09 20806 TMT1-7 141.32 65.62 1055.4 2041.9 1596 1161.3 1536.9 1573.3 1002 2011 1641 1176 1572 1517 4 4 4 4 4 4 130620 6801 1358 6741 10694;10695;10696;10697 13896;13897;13898;13899 13896 4 GFLAAFDAAWMVK Unmodified 1425.7115 0.7114929 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 9 0 1 87.885 87.885 3 0.0067777 26682 TMT1-8 54.7 30.318 23.38 29.056 13.351 22.852 21.178 22.848 22 29 15 22 22 22 1 1 1 1 1 1 2672.8 6802 2256 6742 10698 13900 13900 1 GFLAEEK Unmodified 792.40177 0.4017693 2246 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 5 0 1 47.875 47.875 2 0.0040981 13124 TMT1-4 137.77 106.4 376.54 617.1 392.03 454.37 343.77 621.26 356 610 417 443 369 592 2 2 2 2 2 2 31089 6803 2246 6743 10699 13901;13902 13901 2 GFLANYIGLK Unmodified 1094.6124 0.61243078 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 9 0 1 70.871 70.871 3 0.001102 20021 TMT1-8 85.731 53.51 61.766 41.929 43.191 35.698 57.217 52.733 58 44 44 36 58 51 1 1 1 1 1 1 3334 6804 2121 6744 10700 13903 13903 1 GFLECGICR Unmodified 1110.495 0.49503454 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 6 0 1 50.822 50.822 2 0.0065454 14466 TMT1-5 94.806 50.039 209.39 332.04 233.25 195.21 272.09 222.49 198 329 243 196 276 216 1 1 1 1 1 1 27161 6805 485 6745 10701 13904 13904 1 GFLEFVEDFIQVPR Unmodified 1694.8668 0.86680757 1235 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 100.71 100.71 3 3.6975E-05 32851 TMT1-7 90.731 71.656 0 0 23.804 0 14.644 0 0 0 22 0 14 0 0 0 2 0 2 0 2869.4 6806 1235 6746 10702;10703 13905;13906 13906 2 GFLFGPSLAQELGLGCVLIR Unmodified 2146.1609 0.1608811 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 9 0 2 94.999 94.999 3 1.8381E-40 29219 TMT1-8 156.22 126.16 61.625 68.52 44.296 47.946 41.739 60.637 58 69 47 47 44 58 2 2 2 2 2 2 64506 6807 541 6747 10704;10705 13907;13908;13909 13907 3 GFLGCFPDIIGTHK Unmodified 1560.7759 0.77588407 3037 Q9Y5X1 SNX9 Sorting nexin-9 yes yes 0 0 0 0 0 9 0 1 69.387 69.387 3 2.3524E-10 19440 TMT1-8 116.84 87.105 68.607 117.26 91.805 56.609 69.836 114.2 65 116 94 58 73 109 1 1 1 1 1 1 9765.1 6808 3037 6748 10706 13910 13910 1 GFLIDGYPR Unmodified 1036.5342 0.53418046 398 P00568;Q9Y6K8-2;Q9Y6K8-3;Q9Y6K8 AK1;AK5 Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5 yes no 0 0 0 0 0 7 0 1 58.507 58.507 2 0.0034331 16900 TMT1-6 101.64 84.404 237.88 362.17 288.81 191.51 292.85 262.41 225 360 296 196 297 254 2 2 2 2 2 2 21983 6809 398 6749 10707 13911;13912 13912 2 GFLLDGDFFVAASLATTLTK Unmodified 2086.0987 0.098657997 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 9 0 2 101.63 101.63 3 1.8994E-08 31504 TMT1-8 78.441 53.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6810 1286 6750 10708;10709 13913;13914 13913 2 GFLLLASLR Unmodified 988.60695 0.60695147 554;32 CON__Q28194;P07996 THBS1 Thrombospondin-1 no no 0 0 0 0 0 9 0 1 73.903 73.903 2 0.00015453 21217 TMT1-8 147.52 86.871 3989.8 5386.5 4563 4385.4 6676.7 6284.4 3769 5387 4715 4376 6782 6074 4 4 4 4 4 4 1048400 + 6811 32;554 6751 10710 13915;13916;13917;13918 13916 4 GFLSDLR Unmodified 806.42865 0.42865276 2602 Q9GZT8;Q9GZT8-2 NIF3L1 NIF3-like protein 1 yes no 0 0 0 0 0 7 0 1 54.375 54.375 2 0.032708 15252 TMT1-6 89.457 38.918 115.24 175.01 140.7 114.73 195.14 134.08 109 174 145 116 196 131 1 1 1 1 1 1 8649.4 6812 2602 6752 10711 13919 13919 1 GFLWDEGFHQLVVQR Unmodified 1829.9213 0.92130275 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 8 0 1 68.204 68.204 3 1.1142E-10 20773 TMT1-7 121.86 114.83 61.154 156.79 48.663 98.273 83.384 90.363 58 152 58 94 87 87 1 1 1 1 1 1 18245 6813 1736 6753 10712 13920 13920 1 GFPLGLSAK Unmodified 888.5069 0.50690308 2824 Q9P270 SLAIN2 SLAIN motif-containing protein 2 yes yes 0 0 0 0 0 9 0 1 60.132 60.132 2 0.028863 15832 TMT1-8 69.598 38.369 92.383 101.01 77.132 65.142 69.443 114.21 87 102 80 65 73 109 1 1 1 1 1 1 10682 6814 2824 6754 10713 13921 13921 1 GFPLITITVR Unmodified 1115.6703 0.67028001 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 70.044 70.044 2 0.013318 19673 TMT1-8 75.043 28.673 153.51 235.05 150.03 184.37 240.32 278.83 145 233 160 181 247 268 2 2 2 2 2 2 22612 6815 2791 6755 10714 13922;13923 13922 2 GFPSVLR Unmodified 774.43882 0.43882351 423 P0DOX6;P01871;P01871-2 IGHM Ig mu chain C region yes no 0 0 0 0 0 8 0 1 50.29 50.29 2 0.0011916 13719 TMT1-7 94.669 25.279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6816 423 6756 10715 13924 13924 1 GFPTICYFEK Unmodified 1260.5849 0.5848954 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 8 0 1 67.388 67.388 2 0.00011272 20447 TMT1-7 138.08 86.225 99.671 131.17 89.077 95.592 97.894 128.32 94 131 94 94 102 123 1 1 1 1 1 1 20467 6817 1780 6757 10716 13925 13925 1 GFPTIYFSPANK Unmodified 1340.6765 0.6764876 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6.33 3.77 1 2 67.194 67.194 2;3 3.941E-13 18413 TMT1-8 163.38 115.56 861.14 1127.7 927.74 850.62 997.61 1276.3 813 1129 959 846 1033 1224 3 3 3 3 3 3 368710 6818 955 6758 10717;10718;10719 13926;13927;13928 13927 3 GFPTIYFSPANKK Unmodified 1468.7715 0.77145062 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 9 0 1 59.371 59.371 4 6.6925E-05 15456 TMT1-8 92.112 65.571 332.97 485.28 433.39 364.18 358.67 551.55 315 484 444 363 377 527 1 1 1 1 1 1 25699 6819 955 6759 10720 13929 13929 1 GFPTWLK Unmodified 847.45922 0.4592246 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 9 0 1 63.925 63.925 2 0.0073501 17235 TMT1-8 135.35 72.508 252.5 316.68 214.35 246.63 329.16 349.85 238 317 227 243 337 337 1 1 1 1 1 1 65019 6820 720 6760 10721 13930 13930 1 GFQALGDAADIR Unmodified 1232.6149 0.61494998 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 5 0 1 55.375 55.375 2 4.4134E-08 16146 TMT1-4 131.42 70.446 193.63 300.59 204.68 200.68 246.14 270.14 183 298 215 199 253 260 1 1 1 1 1 1 46773 6821 410 6761 10722 13931 13931 1 GFQEVVTPNIFNSR Unmodified 1606.8104 0.81035532 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7.5 0.5 1 1 65.793 65.793 3 0.00011052 19835 TMT1-7 85.006 63.449 61.339 94.708 70.081 65.4 78.08 75.59 58 94 73 65 80 73 2 2 2 2 2 2 14159 6822 902 6762 10723;10724 13932;13933 13933 2 GFQHCVK Unmodified 874.41196 0.41195684 1229 P50851-2;P50851;Q8NFP9 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 0 8 0 1 30.961 30.961 3 0.03207 6164 TMT1-7 58.604 39.289 68.833 79.037 86.219 63.441 131.06 89.002 65 80 87 65 131 87 1 1 1 1 1 1 1786.2 6823 1229 6763 10725 13934 13934 1 GFQQILAGEYDHLPEQAFYMVGPIEEAVAK Unmodified 3349.6329 0.63291481 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 89.256 89.256 4 9.8928E-35 29462 TMT1-5 119.14 96.9 50.748 85.036 54.916 55.729 59.165 91.054 48 84 58 55 62 87 3 3 3 3 3 3 26411 6824 508 6764 10726;10727 13935;13936;13937 13936 3 GFQSLLSEVNR Unmodified 1248.6463 0.64625011 1221 P50452;P50452-2 SERPINB8 Serpin B8 yes no 0 0 0 0 0 7 0 1 63.256 63.256 2 0.00021032 18727 TMT1-6 107.85 76.086 76.965 116.05 130.91 78.052 84.314 90.336 73 116 131 80 87 87 1 1 1 1 1 1 15391 6825 1221 6765 10728 13938 13938 1 GFSAEQIAR Unmodified 977.49304 0.49304393 2615 Q9H0U3 MAGT1 Magnesium transporter protein 1 yes yes 0 0 0 0 0 5 0 1 41.864 41.864 2 0.0014108 10765 TMT1-4 119.86 101.32 130.02 226.22 136.81 131.38 194.09 203.4 123 223 145 131 198 196 1 1 1 1 1 1 22600 6826 2615 6766 10729 13939 13939 1 GFSDEDNTWEPEENLDCPDLIAEFLQSQK Unmodified 3425.4882 0.48816065 1518 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 0 0 4 0 2 92.424 92.424 4;5 0.013402 30541 TMT1-3 33.601 27.571 0 30.757 5.9235 18.912 21.762 11.105 0 29 7 18 22 11 0 2 1 2 2 2 1948.9 6827 1518 6767 10730;10731 13940;13941 13940 2 GFSEGLWEIENNPTVK Unmodified 1818.8788 0.87882882 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 0 6 0 1 69.445 69.445 3 4.9058E-15 21816 TMT1-5 112.63 87.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6828 1257 6768 10732 13942 13942 1 GFSIPECQK Unmodified 1064.4961 0.4960804 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 6.33 0.471 2 1 50.192 50.192 2;3 0.00025691 14241 TMT1-5 121.09 82.129 522.57 631.51 723.18 587.18 717.62 826.99 494 638 730 589 739 795 3 3 3 3 3 3 109560 6829 271 6769 10733;10734;10735 13943;13944;13945 13944 3 GFSLEELR Unmodified 949.4869 0.48689592 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 0 5 0 1 56.836 56.836 2 0.03602 16725 TMT1-4 78.516 29.729 54.105 64.691 49.069 43.97 63.653 67.474 51 65 51 44 65 65 1 1 1 1 1 1 44651 6830 897 6770 10736 13946 13946 1 GFSLESCR Unmodified 954.42292 0.42291545 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5.5 0.5 1 1 43.311 43.311 2 0.00049419 11356 TMT1-4 150.88 89.387 261.01 348.43 381.18 247.15 412.46 360.26 247 350 383 254 417 349 2 2 2 2 2 2 76039 6831 536 6771 10737;10738 13947;13948 13947 2 GFSTWLK Unmodified 837.43849 0.43848916 894 P26038 MSN Moesin yes yes 0 0 0 0 0 9 0 1 61.273 61.273 2 0.0073501 16244 TMT1-8 135.35 67.593 2296.4 3598.9 3059.5 2529 3508.2 3473.1 2174 3576 3142 2541 3579 3352 1 1 1 1 1 1 374460 6832 894 6772 10739 13949 13949 1 GFSVVADTPELQR Unmodified 1417.7201 0.72014333 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 56.214 56.214 2;3 1.6806E-16 16484 TMT1-4 177.47 130.24 273.14 383.09 295.39 254.57 289.76 359.5 258 382 306 254 300 345 2 2 2 2 2 2 46232 6833 1801 6773 10740;10741 13950;13951;13952 13952 3 GFTDADNTWEPEENLDCPELIEAFLNSQK Unmodified 3381.4983 0.4983314 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 0 6 1 1 1 92.147 92.147 4 4.9435E-09 30430 TMT1-4 75.193 69.574 62.228 135.13 66.874 82.838 90.874 106.14 59 132 73 81 94 102 3 3 3 3 3 3 14634 6834 1681 6774 10742;10743 13953;13954;13955 13953 3 GFTIPEAFR Unmodified 1036.5342 0.53418046 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 6.25 3.11 1 1 1 1 62.624 62.624 2 1.3655E-49 18510 TMT1-7 230.54 126.18 2339.2 3357.9 2919.3 2255.2 2820.1 3498.1 2212 3350 2988 2271 2910 3357 7 7 7 7 7 7 742730 6835 59 6775 10744;10745;10746;10747 13956;13957;13958;13959;13960;13961;13962 13960 7 GFVEIQTPK Unmodified 1017.5495 0.54949617 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 53.27 53.27 2 1.3594E-05 14804 TMT1-6 154.84 103.96 115.27 168.63 140.72 122.72 177.24 187.89 109 168 145 123 181 181 1 1 1 1 1 1 17809 6836 714 6776 10748 13963 13963 1 GFVLQDTVEQLR Unmodified 1403.7409 0.74087877 1332 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 63.781 63.781 2 0.016801 19614 TMT1-5 68.44 24.633 38.154 43.528 42.816 44.634 48.158 91.368 36 44 44 44 51 87 1 1 1 1 1 1 9869.5 6837 1332 6777 10749 13964 13964 1 GFVPAGESSSEAGGENYKDADECLLFGQEICK Unmodified 3463.5184 0.51841492 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 5 0 1 68.522 68.522 4 5.2029E-53 21243 TMT1-4 146.17 129.01 107.93 121.06 151.85 107.98 111.98 127.92 102 123 152 109 116 123 1 1 1 1 1 1 40888 6838 1797 6778 10750 13965 13965 1 GFVTADMIR Unmodified 1008.5063 0.50625115 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 7 0 1 54.206 54.206 2 0.0059897 15185 TMT1-6 96.027 60.67 177.1 185.92 193.63 167.82 168.7 254.22 167 189 197 167 177 243 1 1 1 1 1 1 11945 6839 2867 6779 10751 13966 13966 1 GFVVINQK Unmodified 903.5178 0.51780212 1068 P40227;P40227-2;Q92526-2;Q92526;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 0 9 0 1 51.415 51.415 2 0.00054103 12336 TMT1-8 155.19 82.956 208.18 175.06 208.61 134.17 225.13 179.06 196 181 209 138 227 174 1 1 1 1 1 1 18931 6840 1068 6780 10752 13967 13967 1 GFYEGIMLVDGFK Unmodified 1474.7166 0.71663786 2829 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 80.751 80.751 3 0.021352 25603 TMT1-6 50.145 35.124 23.185 52.259 26.417 38.349 27.538 30.128 22 51 29 37 29 29 1 1 1 1 1 1 3792.6 6841 2829 6781 10753 13968 13968 1 GFYPSDIAVEWESNGQPENNYK Unmodified 2543.1241 0.12409748 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region no no 0 0 0 0 0 5 0 2 72.812 72.812 3;4 1.1997E-17 22932 TMT1-4 111.18 82.529 146.34 157.75 157.08 131.03 148.56 158.86 138 160 160 131 153 153 3 3 3 3 3 3 40273 6842 420 6782 10754;10755 13969;13970;13971 13970 3 GGADDER Unmodified 718.2882 0.28819611 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 7 0 1 68.997 68.997 1 0.046072 21020 TMT1-6 22.104 17.748 30.638 44.028 43.215 35.839 49.625 60.412 29 44 44 36 51 58 1 1 1 1 1 1 11633 6843 1754 6783 10756 13972 13972 1 GGAEGELQALR Unmodified 1099.5622 0.56218613 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 44.1 44.1 2 0.00012385 12824 TMT1-2 112.11 75.043 91.806 177.11 109.53 109.93 142.22 128.13 87 174 116 109 145 124 2 2 2 2 2 2 31336 6844 1833 6784 10757;10758 13973;13974 13974 2 GGAEQFMEETER Unmodified 1382.5772 0.57724384 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 2 0 1 47.201 47.201 3 0.0089884 13807 TMT1-1 60.364 48.198 68.894 86.762 69.445 89.524 75.908 106.57 65 87 73 87 80 102 1 1 1 1 1 1 15705 6845 2496 6785 10759 13975 13975 1 GGAESHTFK Unmodified 932.43519 0.4351947 1215 P50238 CRIP1 Cysteine-rich protein 1 yes yes 0 0 0 0 0 5 0 1 29.286 29.286 3 0.0004565 5783 TMT1-4 104.01 41.172 275.54 371.77 262.85 247.12 323.94 409.69 260 371 275 246 334 393 1 1 1 1 1 1 29144 6846 1215 6786 10760 13976 13976 1 GGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVAR Unmodified 3314.5017 0.50171772 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 0 4.5 0.5 1 1 63.752 63.752 4 1.4279E-44 19345 TMT1-4 135.02 123.49 107.58 84.275 62.15 57.939 93.065 106.08 101 87 65 58 95 102 2 2 2 2 2 2 27666 6847 2802 6787 10761;10762 13977;13978 13978 2 GGAGFPTGLK Unmodified 903.48142 0.48141661 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 8 0 1 49.961 49.961 2 0.00057511 13553 TMT1-7 113.18 68.781 60.985 133.65 96.728 119.2 97.065 120.89 58 131 102 116 102 116 1 1 1 1 1 1 11878 6848 1206 6788 10763 13979 13979 1 GGAGYWNSLFR Unmodified 1226.5833 0.58325592 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 9 0 1 63.255 63.255 2 8.8192E-05 17005 TMT1-8 107.08 53.2 77.579 62.709 72.975 41.687 109.28 82.162 73 65 73 44 109 80 1 1 1 1 1 1 8617.6 6849 1785 6789 10764 13980 13980 1 GGDEYDNHCGK Unmodified 1250.4622 0.46221408 814 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 0 3 0 1 27.152 27.152 3 4.3799E-05 6211 TMT1-2 83.397 69.491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6850 814 6790 10765 13981 13981 1 GGDISVCEWYQR Unmodified 1468.6405 0.6405128 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 0 4.33 0.471 2 1 54.79 54.79 2;3 2.6854E-10 15867 TMT1-4 161.51 129.19 198.45 322.48 276.23 216.2 298.22 316.62 188 320 283 218 305 305 3 3 3 3 3 3 76463 6851 712 6791 10766;10767;10768 13982;13983;13984 13984 3 GGDLMAYDR Unmodified 996.43348 0.43348014 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 3 0 1 43.746 43.746 2 0.039926 12771 TMT1-2 70.028 44.291 107.74 191.75 124.46 117.46 101.43 209.24 102 189 131 116 109 199 1 1 1 1 1 1 21569 6852 1409;1410 6792 10769 13985 13985 1 GGDVAVELPFTLMHPK Unmodified 1709.8811 0.88107742 1179 P49407-2 ARRB1 Beta-arrestin-1 yes yes 0 0 0 0 0 7 0 1 68.629 68.629 3 0.0013681 20875 TMT1-6 49.265 41.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6853 1179 6793 10770 13986 13986 1 GGDVAVELPFTLMHPKPK Unmodified 1935.0288 0.028804293 1179 P49407-2 ARRB1 Beta-arrestin-1 yes yes 0 0 0 0 1 8 0 1 62.313 62.313 4 0.0015569 18458 TMT1-7 56.851 40.729 92.346 100.91 83.346 95.801 104.92 136.65 87 102 87 94 109 131 1 1 1 1 1 1 12643 6854 1179 6794 10771 13987 13987 1 GGEEPLPEGLFWLLVTGHIPTEEQVSWLSK Unmodified 3347.7078 0.70779432 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 8 0 2 99.064 99.064 4;5 0.00035545 32375 TMT1-7 43.291 33.408 23.368 21.468 21.787 13.725 14.834 31.557 22 22 22 14 15 30 2 2 2 2 1 2 2721.7 6855 271 6795 10772;10773 13988;13989 13989 2 GGEGTGYFVDFSVR Unmodified 1489.6838 0.68375782 466 P04196 HRG Histidine-rich glycoprotein yes yes 0 0 0 0 0 5 0 1 62.316 62.316 2 0.00011888 18849 TMT1-4 91.961 80.114 30.678 35.505 43.715 36.11 33.651 68.33 29 36 44 36 36 65 1 1 1 1 1 1 6851.2 6856 466 6796 10774 13990 13990 1 GGEIQPVSVK Unmodified 1012.5553 0.55530983 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 44.153 44.153 2;3 5.8701E-05 11819 TMT1-5 110.46 71.651 269.8 370.02 327.27 309.8 448.28 421.07 255 370 337 309 456 407 2 2 2 2 2 2 36493 6857 1395 6797 10775;10776 13991;13992;13993 13993 3 GGELLVHTGFLGSSQDR Unmodified 1771.8853 0.88531118 2043 Q6RW13 AGTRAP Type-1 angiotensin II receptor-associated protein yes yes 0 0 0 0 0 6 0 1 53.291 53.291 3 0.00046268 15371 TMT1-5 66.913 47.074 53.894 80.293 71.34 57.405 92.336 97.569 51 80 73 58 94 94 1 1 1 1 1 1 14084 6858 2043 6798 10777 13994 13994 1 GGELVYTDSEAR Unmodified 1295.5994 0.59935949 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 41.639 41.639 2 1.3802E-08 11586 TMT1-1 145.75 107.44 53.816 87.633 78.12 65.348 55.341 67.711 51 87 80 65 58 65 1 1 1 1 1 1 13620 6859 1833 6799 10778 13995 13995 1 GGETSEMYLIQPDSSVKPYR Unmodified 2256.0732 0.073247883 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 5.5 0.5 1 1 55.301 55.301 3 1.0969E-17 16102 TMT1-4 124.84 109.59 154.94 196.05 122.2 132.7 169.95 204.09 146 196 130 131 175 196 2 2 2 2 2 2 53565 6860 438 6800 10779;10780 13996;13997 13996 2 GGFAPAEK Unmodified 775.38645 0.38645359 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 6 0 1 39.672 39.672 2 0.0058278 10021 TMT1-5 113.5 56.218 1460.8 1927.6 2085.2 1314.6 1947.5 2112.7 1382 1937 2095 1350 1989 2034 2 2 2 2 2 2 284670 6861 1149 6801 10781 13998;13999 13998 2 GGFEEPVLLK Unmodified 1087.5914 0.59136099 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 5.5 0.5 1 1 61.087 61.087 2;3 0.00043013 18429 TMT1-4 117.89 59.456 191.31 324.01 213.27 243.78 251.68 325.41 181 320 226 239 262 312 3 3 3 3 3 3 24422 6862 3006 6802 10782;10783 14000;14001;14002 14001 3 GGFNLYVTDAAELWSTCFTPDSLAALK Unmodified 2946.411 0.41096037 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 8 0 1 97.791 97.791 4 0.00037303 31950 TMT1-7 49.266 37.07 15.95 22.241 5.4615 15.66 21.765 15.369 15 22 7 15 22 15 1 1 1 1 1 1 1861.8 6863 2539 6803 10784 14003 14003 1 GGGALIQK Unmodified 742.43374 0.43373813 3092 yes no 0 0 0 0 0 7 0 1 40.691 40.691 2 0.0013003 9847 TMT1-6 106.76 32.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6864 3092 6804 10785 14004 14004 1 GGGDVLEPVSSDSLSTK Unmodified 1646.7999 0.79990979 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 4 0 1 55.146 55.146 3 5.2496E-10 16274 TMT1-3 111.03 86.102 123.11 160.39 92.679 167.04 123.36 174.5 116 160 102 160 131 167 1 1 1 1 1 1 34821 6865 1960 6805 10786 14005 14005 1 GGGEQETQELASK Unmodified 1332.6157 0.61573784 2445 Q96QR8 PURB Transcriptional activator protein Pur-beta yes yes 0 0 0 0 0 2 0 1 39.578 39.578 3 0.0024681 10821 TMT1-1 67.115 47.511 77.723 63.111 48.348 59.615 47.726 83.918 73 65 51 58 51 80 1 1 1 1 1 1 6194.1 6866 2445 6806 10787 14006 14006 1 GGGEVIVR Unmodified 785.43955 0.43955179 69 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 0 0 0 3 0 1 32.513 32.513 2 0.01338 8359 TMT1-2 95.352 28.553 53.511 165.57 63.371 121.48 81.511 113.87 51 160 73 116 87 109 1 1 1 1 1 1 9469.9 6867 69 6807 10788 14007 14007 1 GGGGNFGPGPGSNFR Unmodified 1376.6222 0.62216062 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 7 0 1 41.697 41.697 2 3.3324E-22 10243 TMT1-6 175.57 132.08 114.99 205.63 155.77 99.563 140.31 197.47 109 203 160 102 145 189 1 1 1 1 1 1 28443 6868 848 6808 10789 14008 14008 1 GGGHILPYDQPLR Unmodified 1421.7415 0.74154747 2635 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 0 5 0 1 44.012 44.012 3 8.4515E-06 11638 TMT1-4 82.505 69.627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6869 2635 6809 10790 14009 14009 1 GGGHVAQIYAIR Unmodified 1240.6677 0.66765425 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 6 0 1 37.405 37.405 3 0.00049928 9154 TMT1-5 65.056 47.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6870 1419 6810 10791 14010 14010 1 GGGLTGLLVGTLDVVLDSSAR Unmodified 1999.095 0.094969603 2002 Q66K14-2;Q66K14 TBC1D9B TBC1 domain family member 9B yes no 0 0 0 0 0 8 0 1 102.43 102.43 3 1.2074E-25 33210 TMT1-7 119.38 99.824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6871 2002 6811 10792 14011 14011 1 GGGPGPGDPPPSETHK Unmodified 1485.6848 0.68482046 628 P10301 RRAS Ras-related protein R-Ras yes yes 0 0 0 0 0 3.5 0.5 1 1 30.378 30.378 3 6.0789E-05 7513 TMT1-2 63.128 47.138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6872 628 6812 10793;10794 14012;14013 14012 2 GGGPTSSEQIMK Unmodified 1190.5601 0.56013721 1611 Q07812-5;Q07812-8;Q07812;Q07812-2;Q07812-4 BAX Apoptosis regulator BAX yes no 0 0 0 0 0 5 0 1 40.308 40.308 3 0.00024798 10162 TMT1-4 90.653 56.121 130.42 159.32 127.44 91.614 187.81 165.2 123 160 131 94 189 160 1 1 1 1 1 1 8485.6 6873 1611 6813 10795 14014 14014 1 GGGQIIPTAR Unmodified 968.54033 0.54032847 685;1816 P13639;Q15029-2;Q15029-3;Q15029 EEF2;EFTUD2 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component no no 0 0 0 0 0 6 0 1 38.369 38.369 2 0.0081998 9526 TMT1-5 86.882 52.709 234.99 526.46 274.9 210.07 396.14 367.13 223 514 293 214 400 355 1 1 1 1 1 1 43457 6874 685;1816 6814 10796 14015 14015 1 GGGVGGFLPAMK Unmodified 1089.5641 0.56410038 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 9 0 1 61.018 61.018 2 8.2039E-07 16150 TMT1-8 119.41 62.843 46.803 50.678 25.734 53.148 56.415 52.756 44 51 29 51 58 51 1 1 1 1 1 1 5599.3 6875 3001 6815 10797 14016 14016 1 GGHDILVR Unmodified 865.477 0.47699993 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 4 0 1 29.896 29.896 3 0.014293 6335 TMT1-3 67.903 21.477 37.933 81.769 47.447 59.22 71.584 59.785 36 80 51 58 73 58 1 1 1 1 1 1 3192.8 6876 3047 6816 10798 14017 14017 1 GGHGQQDLYR Unmodified 1129.5265 0.52646932 1940 Q4KMP7 TBC1D10B TBC1 domain family member 10B yes yes 0 0 0 0 0 3 0 1 23.84 23.84 3 0.006537 4877 TMT1-2 68.847 48.64 30.776 35.777 27.034 45.856 33.202 68.343 29 36 29 44 36 65 1 1 1 1 1 1 5583.8 6877 1940 6817 10799 14018 14018 1 GGHPLSK Unmodified 694.37622 0.37622326 98 O14618 CCS Copper chaperone for superoxide dismutase yes yes 0 0 0 0 0 9 0 1 26.275 26.275 3 0.0062286 4275 TMT1-8 83.801 83.801 28.794 21.27 11.723 20.698 24.638 16.353 27 22 13 20 25 16 1 1 1 1 1 1 492.8 6878 98 6818 10800 14019 14019 1 GGIHTADTK Unmodified 898.45084 0.45084476 69 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 0 0 0 5 0 1 26.991 26.991 3 0.021364 4901 TMT1-4 56.258 23.938 37.992 58.189 57.496 35.406 27.417 37.594 36 58 58 36 29 36 1 1 1 1 1 1 2654.6 6879 69 6819 10801 14020 14020 1 GGIMLPEK Unmodified 843.45242 0.45242467 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 51.959 51.959 2 0.0057225 14278 TMT1-6 114.93 51.446 202.02 364.25 182.07 184.38 138.36 414.99 191 358 197 181 154 393 1 1 1 1 1 1 23418 6880 1395 6820 10802 14021 14021 1 GGISNVWFDR Unmodified 1149.5567 0.55670682 1992 Q5VWZ2 LYPLAL1 Lysophospholipase-like protein 1 yes yes 0 0 0 0 0 7 0 1 58.338 58.338 2 0.03747 16823 TMT1-6 66.92 39.395 85.154 71.009 55.094 66.722 55.278 67.713 80 73 58 65 58 65 1 1 1 1 1 1 6889.9 6881 1992 6821 10803 14022 14022 1 GGIVDEGALLR Unmodified 1098.6033 0.60332266 159 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 0 4 0 1 54.448 54.448 2 2.5121E-06 16014 TMT1-3 131.11 84.442 108.36 130.87 72.439 128.46 88.263 121.14 102 131 80 123 94 116 1 1 1 1 1 1 17030 6882 159 6822 10804 14023 14023 1 GGIVGMTLPIAR Unmodified 1183.6747 0.67471346 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 9 0 1 63.255 63.255 2 1.3606E-08 16978 TMT1-8 135.43 81.874 76.999 139.89 104.95 94.533 103.92 167.59 73 138 109 94 109 160 1 1 1 1 1 1 20184 6883 2485 6823 10805 14024 14024 1 GGIVSQVK Unmodified 786.45995 0.45995289 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 7 0 1 41.695 41.695 2 0.0064109 10290 TMT1-6 105.57 27.071 338.55 520.05 367.73 260.5 442.32 630.18 320 516 381 266 455 603 2 2 2 2 2 2 72544 6884 845 6824 10806 14025;14026 14026 2 GGKNELSFK Unmodified 978.51345 0.51344502 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 8 0 1 42.073 42.073 3 0.023641 10461 TMT1-7 63.32 17.324 550.47 680.31 682.5 435.53 483.05 763.33 520 685 689 444 506 729 1 1 1 1 1 1 36106 6885 126 6825 10807 14027 14027 1 GGLGLILK Unmodified 769.50617 0.5061748 304 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 0 0 9 0 1 62.081 62.081 2 0.0068307 16600 TMT1-8 103.29 19.909 354.31 396.97 347.38 274.14 363.09 421.37 334 401 356 276 373 405 2 2 2 2 2 2 27887 6886 304 6826 10808 14028;14029 14029 2 GGLGLSGAK Unmodified 758.42865 0.42865276 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 42.833 42.833 2 0.0016243 10697 TMT1-7 116.73 53.246 423.07 928.56 603.7 500.06 672.09 837.89 402 909 632 502 692 804 2 2 2 2 2 2 52281 6887 851 6827 10809;10810 14030;14031 14031 2 GGLGYVEETSEFEAR Unmodified 1642.7475 0.74748029 2879 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 0 2 0 1 56.588 56.588 3 9.7398E-05 17499 TMT1-1 80.706 60.61 23.328 21.356 28.66 29.601 20.611 30.326 22 22 29 29 22 29 1 1 1 1 1 1 4436.8 6888 2879 6828 10811 14032 14032 1 GGLLEVR Unmodified 742.43374 0.43373813 3072 yes no 0 0 0 0 0 5 0 1 42.236 42.236 2 0.0012482 10934 TMT1-4 101.21 28.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6889 3072 6829 10812 14033 14033 1 GGLPLEEVTVAEVLAAR Unmodified 1722.9516 0.95159983 719 P15289-2;P15289 ARSA Arylsulfatase A;Arylsulfatase A component B;Arylsulfatase A component C yes no 0 0 0 0 0 5 0 1 79.732 79.732 3 0.00046579 25616 TMT1-4 66.826 42.268 30.849 51.47 42.732 36.652 66.063 37.557 29 51 44 37 66 37 1 2 2 2 2 2 8287.5 6890 719 6830 10813 14034;14035 14034 2 GGLYIVTEYMAK Unmodified 1343.6795 0.67952407 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 8 0 1 71.863 71.863 3 0.00011304 22198 TMT1-7 97.734 82.858 61.559 87.765 39.03 67.379 71.209 59.796 58 87 44 65 73 58 1 1 1 1 1 1 10290 6891 1083 6831 10814 14036 14036 1 GGNFGFGDSR Unmodified 1012.4363 0.43625733 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 5.5 0.5 1 1 43.183 43.183 2 1.3798E-06 11394 TMT1-5 162.49 57.245 414.97 630.09 414.73 433.02 535.34 614.73 392 625 438 428 551 591 2 2 2 2 2 2 148100 6892 848 6832 10815;10816 14037;14038 14038 2 GGNIFHK Unmodified 771.40277 0.40277236 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 0 8 0 1 37.406 37.406 3 0.026239 8539 TMT1-7 62.717 25.072 210.47 265.05 289.87 204.59 291.41 286.97 199 267 292 208 297 277 1 1 1 1 1 1 71799 6893 683 6833 10817 14039 14039 1 GGNIGDGGGAADR Unmodified 1115.4956 0.49556312 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2 0.816 1 1 1 26.609 26.609 2 1.3862E-08 5744 TMT1-1 128.57 98.314 160.53 150.99 122.3 166.25 129.23 126.36 151 154 129 161 135 122 3 3 3 3 3 3 26795 6894 1311 6834 10818;10819;10820 14040;14041;14042;14043 14041 4 GGNRFEPYANPTK Unmodified 1449.7001 0.70007659 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 6 0 1 38.406 38.406 3 0.0025404 9553 TMT1-5 73.386 61.221 92.392 108.59 69.132 64.491 129.39 135.95 87 109 73 65 131 131 1 1 1 1 1 1 10502 6895 1261 6835 10821 14044 14044 1 GGPGGELPR Unmodified 838.42972 0.42971539 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 3 0 1 32.658 32.658 2 0.015683 8387 TMT1-2 81.119 42.881 61.327 118.42 52.003 74.958 92.042 82.654 58 116 58 73 94 80 1 1 1 1 1 1 9081.8 6896 1584 6836 10822 14045 14045 1 GGPGSAVSPYPTFNPSSDVAALHK Unmodified 2355.1495 0.14952437 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 7 0.816 1 1 1 59.071 59.071 4 1.9608E-18 17195 TMT1-7 113.36 90.485 307.23 531.32 392.44 325.58 448.83 414.66 291 525 407 327 457 401 3 3 3 3 3 3 145450 6897 461 6837 10823;10824;10825 14046;14047;14048 14048 3 GGPGSTLSFVGK Unmodified 1105.5768 0.57677356 2508 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 0 0 8 0 1 54.375 54.375 3 0.012882 15305 TMT1-7 55.776 30.559 68.498 133.15 96.694 119.78 66.418 129.22 65 131 102 116 73 123 1 1 1 1 1 1 6961.3 6898 2508 6838 10826 14049 14049 1 GGPLDGTYR Unmodified 934.45084 0.45084476 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 4 0 1 38.448 38.448 2 0.00056838 9667 TMT1-3 134.15 103.73 446.62 521.51 417.45 441.83 523.04 443.45 421 525 435 436 534 430 2 2 2 2 2 2 75919 6899 406 6839 10827 14050;14051 14050 2 GGPNIITLADIVKDPVSR Unmodified 1864.0418 0.04181182 1494 P68400;Q8NEV1 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 0 1 8 0 1 71.512 71.512 3 0.0023406 22081 TMT1-7 50.868 33.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6900 1494 6840 10828 14052 14052 1 GGPPFAFVEFEDPRDAEDAVYGR Unmodified 2540.1608 0.16081734 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 1 4.33 0.471 2 1 73.429 73.429 3;4 1.0972E-17 23513 TMT1-3 112.49 94.891 185.5 223.66 193.09 128.19 185.32 188.72 175 225 197 131 189 182 5 5 5 5 5 5 50512 6901 1615 6841 10829;10830;10831 14053;14054;14055;14056;14057 14055 5 GGPTPQEAIQR Unmodified 1152.5887 0.58873523 2645 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 0 3.5 0.5 1 1 34.571 34.571 2 1.3518E-05 9124 TMT1-2 123.51 102.51 100.73 122.44 97.922 102.99 141.48 159.06 95 123 102 102 145 153 2 2 2 2 2 2 100380 6902 2645 6842 10832;10833 14058;14059 14058 2 GGQIMTLK Unmodified 846.46332 0.4633237 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 1 48.4 48.4 2 0.004794 12953 TMT1-7 122.52 57.74 159.96 436.84 337.25 226.97 288.06 445.9 153 426 346 231 300 426 1 1 1 1 1 1 29128 6903 471 6843 10834 14060 14060 1 GGQTHLGLPVFNTVK Unmodified 1566.8518 0.85182621 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 9 0 1 55.563 55.563 3 1.0716E-07 14014 TMT1-8 103.6 87.713 131.23 197.37 139.27 114.87 192.2 219.44 124 196 145 116 196 211 2 2 2 2 2 2 24111 6904 1285 6844 10835 14061;14062 14062 2 GGSDDSSKDPIDVNYEK Unmodified 1824.8014 0.80136636 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 4 0 1 47.408 47.408 3 0.00068428 13241 TMT1-3 69.148 51.324 99.416 145.58 119.7 93.194 128.37 127.45 94 145 123 94 131 123 1 1 1 1 1 1 14328 6905 606 6845 10836 14063 14063 1 GGSDGYGSGR Unmodified 911.37332 0.37332272 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 1.5 0.5 1 1 21.482 21.482 2 0.00011637 3819 TMT1-1 137.69 59.502 123.37 92.04 106.81 87.56 120.05 103.17 116 96 108 88 122 100 3 3 3 3 3 3 12527 6906 848 6846 10837;10838 14064;14065;14066 14065 3 GGSDPETTGIQIWSEVFTVEKPGGK Unmodified 2618.2864 0.28641178 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 1 7 0 2 78.472 78.472 3;5 3.4356E-15 24718 TMT1-6 89.511 77.431 100.58 106.91 136.89 123.6 142.42 134.52 95 109 138 123 146 130 2 2 2 2 2 2 10103 6907 2007 6847 10839;10840 14067;14068;14069 14069 3 GGSFENNWNIYK Unmodified 1427.647 0.64697839 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 7 0 1 59.003 59.003 2 9.3243E-05 17094 TMT1-6 104.43 51.644 54.136 49.668 56.566 65.924 93.007 66.636 51 51 58 65 94 65 1 1 1 1 1 1 11406 6908 765 6848 10841 14070 14070 1 GGSGSGPTIEEVD Unmodified 1203.5255 0.52552585 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 2 0 1 46.471 46.471 2 0.0005191 13586 TMT1-1 92.051 77.378 91.724 154.22 142.7 100.42 136.17 103.78 87 153 145 102 138 101 2 2 2 2 2 2 59514 6909 618 6849 10842 14071;14072 14072 2 GGSGSVLQDEEVLASLER Unmodified 1844.9116 0.91158551 2792 Q9NZ09-2;Q9NZ09;Q9NZ09-4;Q9NZ09-3 UBAP1 Ubiquitin-associated protein 1 yes no 0 0 0 0 0 3 0 1 67.314 67.314 3 0.0082456 22059 TMT1-2 34.346 24.688 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6910 2792 6850 10843 14073 14073 1 GGSHDAPENTLAAIR Unmodified 1507.7379 0.73791866 2796 Q9NZC3 GDE1 Glycerophosphodiester phosphodiesterase 1 yes yes 0 0 0 0 0 3 0 1 38.055 38.055 3 1.4307E-07 10539 TMT1-2 104.7 94.644 61.621 72.826 41.314 36.233 34.708 37.386 58 73 44 36 36 36 1 1 1 1 1 1 6415.8 6911 2796 6851 10844 14074 14074 1 GGSRGEEVGELSR Unmodified 1331.643 0.64295564 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 1 2 0 1 28.225 28.225 3 0.013102 6279 TMT1-1 59.67 32.964 46.869 43.305 20.969 0 28.495 53.553 44 44 22 0 29 51 1 1 1 0 1 1 2928.6 6912 599 6852 10845 14075 14075 1 GGSTSYGTGSETESPR Unmodified 1571.67 0.66995825 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 3.5 1.12 1 1 1 1 29.416 29.416 3 5.6464E-45 6893 TMT1-1 214.58 189.4 392.74 584.97 402.95 372.1 440.84 615.29 371 581 422 370 458 589 7 7 7 7 7 7 243470 6913 437 6853 10846;10847;10848;10849 14076;14077;14078;14079;14080;14081;14082 14077 7 GGSYSQAACSDSAQGSDVSLTA Unmodified 2117.8808 0.88075566 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 0 2 0 1 50.611 50.611 3 0.00023085 15146 TMT1-1 55.127 44.788 15.553 67.545 33.869 21.362 35.391 37.366 15 65 36 22 36 36 1 1 1 1 1 1 10490 6914 425 6854 10850 14083 14083 1 GGTLKDDDWGNIK Unmodified 1417.6838 0.68375782 1298 P54578-2;P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 1 6 0 2 50.684 50.684 3;4 0.00039912 14425 TMT1-5 83.204 49.795 644.14 772.13 731.71 508.39 753.87 851.54 608 778 743 518 771 819 2 2 2 2 2 2 48966 6915 1298 6855 10851;10852 14084;14085 14085 2 GGTLTQYEGK Unmodified 1052.5138 0.51383895 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 5 0 1 42.406 42.406 3 8.4159E-05 10983 TMT1-4 117.7 71.236 152.69 301.86 230.29 138.75 319.66 313.88 145 297 236 145 322 303 1 1 1 1 1 1 20490 6916 1910 6856 10853 14086 14086 1 GGTPSAFDR Unmodified 906.41954 0.41954463 1559;765;560 P17858;P17858-2;Q01813;Q01813-2;P08237-3;P08237 PFKL;PFKP;PFKM ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type no no 0 0 0 0 0 4 0 1 33.475 33.475 2 0.0024497 7722 TMT1-3 103.8 60.969 419.4 132.26 452.96 317.8 380.4 285.49 394 158 441 322 387 278 1 1 1 1 1 1 38693 6917 765;1559;560 6857 10854 14087 14087 1 GGVADALLYR Unmodified 1033.5556 0.55564418 703 P14406 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes yes 0 0 0 0 0 6 0 1 53.992 53.992 2 0.0055153 15679 TMT1-5 90.761 54.192 290.23 536.2 359.95 248.73 395.34 369.28 275 528 374 254 401 357 1 1 1 1 1 1 91508 6918 703 6858 10855 14088 14088 1 GGVAGGSILK Unmodified 857.49707 0.49706667 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 7 0 1 45.722 45.722 2 0.0038962 11812 TMT1-6 94.692 25.268 84.714 116.19 90.745 80.005 107.77 74.743 80 116 94 80 109 73 1 1 1 1 1 1 6412.8 6919 1077 6859 10856 14089 14089 1 GGVASGFK Unmodified 721.37589 0.3758889 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 5.33 3.09 1 1 1 40.899 40.899 2 0.0014727 9923 TMT1-6 141.78 88.316 2818.9 3443.4 3375.7 2941.1 3258.3 4075.1 2662 3468 3445 2931 3378 3910 4 4 4 4 4 4 343760 + 6920 506 6860 10857;10858;10859 14090;14091;14092;14093 14091 4 GGVDHAAAFGR Unmodified 1056.5101 0.51009098 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 5 0 1 30.722 30.722 3 0.0017643 6363 TMT1-4 79.07 54.294 192.26 173.4 181.29 192.9 152.52 204.58 181 178 186 189 161 196 1 1 1 1 1 1 19462 6921 2688 6861 10860 14094 14094 1 GGVNDNFQGVLQNVR Unmodified 1615.8067 0.80666693 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 2.22 1 1 2 1 1 56.726 56.726 2;3 9.9333E-80 16681 TMT1-5 249.22 209.35 1295.6 1682.5 1371.9 1183.4 1598.2 1770.9 1223 1685 1416 1185 1638 1704 9 9 9 9 9 9 775220 + 6922 32;554 6862 10861;10862;10863;10864;10865;10866 14095;14096;14097;14098;14099;14100;14101;14102;14103 14101 9 GGVQELLR Acetyl (N-term) 912.50288 0.50288033 2576 Q9BYD2 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 1 0 0 0 0 2 0 1 39.814 39.814 2 0.0074667 10887 TMT1-1 64.803 21.757 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6923 2576 6863 10867 14104 14104 1 GGVQVPAVDISSSLGGR Unmodified 1597.8424 0.84238373 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 59.956 59.956 3 0.0021471 18043 TMT1-5 57.745 33.402 108.26 130.6 88.664 104.67 81.478 137.32 102 131 94 102 87 131 1 1 1 1 1 1 22399 6924 1632 6864 10868 14105 14105 1 GGVTEISAADK Unmodified 1046.5244 0.52440364 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 4 0 1 42.712 42.712 2 1.6357E-11 11395 TMT1-3 169.37 105.81 92.121 100.28 121.7 110.19 89.909 97.638 87 102 123 109 94 94 1 1 1 1 1 1 10918 6925 2717 6865 10869 14106 14106 1 GGVVGIK Unmodified 628.39081 0.39081069 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 7.5 0.5 1 1 42.159 42.159 2 0.0075898 10466 TMT1-6 126.05 70.651 2550.5 3495.8 3175 2474.1 3388.8 3521.3 2411 3497 3242 2495 3464 3394 4 4 4 4 4 4 425240 6926 459 6866 10870;10871 14107;14108;14109;14110 14107 4 GGVVLKEDALPGQK Unmodified 1409.7878 0.78782897 1024 P35613-2;P35613 BSG Basigin yes no 0 0 0 0 1 6.5 0.5 1 1 49.066 49.066 3 1.7566E-10 13742 TMT1-5 126.09 98.437 364.98 565.68 395.32 402.55 357.13 545.2 345 561 415 396 377 521 2 2 2 2 2 2 31575 6927 1024 6867 10872;10873 14111;14112 14111 2 GGVVTSNPLGF Unmodified 1046.5397 0.53965977 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 70.127 70.127 2 2.1253E-08 21472 TMT1-6 159.2 132.59 61.122 141.59 66.876 74.219 84.234 97.8 58 138 73 73 87 94 1 1 1 1 1 1 45573 6928 1194 6868 10874 14113 14113 1 GGWGISPR Unmodified 828.42424 0.42423608 1482 P67775;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 8 0 1 43.19 43.19 2 0.028765 10896 TMT1-7 82.671 45.696 169.72 198.66 161.12 152.67 205.42 210.54 160 200 167 152 210 203 1 1 1 1 1 1 17411 6929 1482 6869 10875 14114 14114 1 GGYFDEFGIIR Unmodified 1272.6139 0.61388734 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 5 0 1 68.544 68.544 2 9.4879E-07 21233 TMT1-4 143.7 122.83 169.55 187.39 199.43 182.18 200.14 172.31 160 190 203 181 205 167 1 1 1 1 1 1 56443 6930 655 6870 10876 14115 14115 1 GGYFPENVK Unmodified 1009.4869 0.48689592 1666 Q13045-2;Q13045 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 2 49.243 49.243 2;3 0.016006 13797 TMT1-5 60.892 26.814 198.49 266.45 317.88 230.91 197.57 334.42 188 268 319 232 210 319 2 2 2 2 2 2 36822 6931 1666 6871 10877;10878 14116;14117 14116 2 GGYIGSTYFER Unmodified 1248.5775 0.57750184 1375 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 0 5 0 1 51.222 51.222 2 0.021779 14485 TMT1-4 70.816 46.786 115.03 190.62 162.52 138.25 153.98 204.54 109 189 167 138 160 196 1 1 1 1 1 1 16895 6932 1375 6872 10879 14118 14118 1 GGYVLHIGTIYGDLK Unmodified 1604.8562 0.85624288 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 63.06 63.06 3 1.6393E-10 18750 TMT1-7 118.24 93.118 145.96 182.58 200.52 166.98 191.33 205.61 138 184 203 167 197 198 1 1 1 1 1 1 26426 6933 1184 6873 10880 14119 14119 1 GHAAFTSDPKPTIEVSGK Unmodified 1840.9319 0.93192702 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 1 7.5 0.5 1 1 44.164 44.164 4 2.3092E-19 11242 TMT1-7 136.39 107.38 285.24 352.87 272.24 254.87 346.92 308.83 269 354 283 254 353 299 2 2 2 2 2 2 41309 6934 389 6874 10881;10882 14120;14121 14121 2 GHAVGDIPGVR Unmodified 1076.5727 0.57269123 1424 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 0 5 0 1 34.757 34.757 3 0.00053352 7916 TMT1-4 91.549 57.753 61.57 56.495 63.712 65.498 93.027 66.635 58 58 65 65 94 65 1 1 1 1 1 1 20350 6935 1424 6875 10883 14122 14122 1 GHAVNLLDVPVPVAR Unmodified 1555.8835 0.88346068 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 7 0 1 56.654 56.654 3 0.0028472 16191 TMT1-6 62.357 40.302 307.6 319.56 328.93 239.22 418.49 499.74 290 325 333 244 427 480 1 1 1 1 1 1 61120 6936 68 6876 10884 14123 14123 1 GHAYSVTGAK Unmodified 989.49304 0.49304393 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7.67 1.25 1 1 1 30.508 30.508 3 0.00016802 6418 TMT1-5 104.42 80.269 434.87 532.35 579.77 379.37 539.95 521.86 411 537 583 388 550 504 3 3 3 3 3 3 44763 6937 536 6877 10885;10886;10887 14124;14125;14126 14124 3 GHCASCQKPIAGK Unmodified 1412.6653 0.66528776 233 O60711;O60711-2 LPXN Leupaxin yes no 0 0 0 0 1 8 0 1 28.898 28.898 4 0.00058784 5359 TMT1-7 78.903 73.693 54.109 64.702 48.41 58.748 93.594 59.157 51 65 51 58 94 58 1 1 1 1 1 1 5160.2 6938 233 6878 10888 14127 14127 1 GHDFHEGVR Unmodified 1052.4788 0.47879085 2020 Q6NVY1 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes yes 0 0 0 0 0 3 0 1 22.134 22.134 3 0.024675 4252 TMT1-2 53.751 30.921 15.775 29.309 28.904 14.267 21.572 22.836 15 29 29 15 22 22 1 1 1 1 1 1 1437.9 6939 2020 6879 10889 14128 14128 1 GHDQYAYDGK Unmodified 1152.4836 0.48360145 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 0 3 0 1 32.006 32.006 3 0.0068313 8177 TMT1-2 68.069 45.19 38.034 50.748 56.888 59.075 49.363 36.967 36 51 58 58 51 36 1 1 1 1 1 1 8938.5 6940 425 6880 10890 14129 14129 1 GHEGDFLIR Unmodified 1042.5196 0.51959303 742 P16333;P16333-2 NCK1 Cytoplasmic protein NCK1 yes no 0 0 0 0 0 4 0 1 39.583 39.583 3 0.0023719 10227 TMT1-3 85.862 49.437 99.823 107.85 83.215 88.55 84.088 82.881 94 109 87 87 87 80 1 1 1 1 1 1 17505 6941 742 6881 10891 14130 14130 1 GHFDTLSK Unmodified 903.44503 0.4450311 1512 P80511 S100A12 Protein S100-A12;Calcitermin yes yes 0 0 0 0 0 6 0 1 37.788 37.788 3 0.0039215 9250 TMT1-5 88.819 47.371 199.11 401.12 279.18 262.42 388.52 336.43 189 394 292 262 394 326 2 2 2 2 2 2 61336 6942 1512 6882 10892 14131;14132 14131 2 GHFFVEDQIYCEK Unmodified 1670.7399 0.73989249 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 53.935 53.935 3 1.3378E-08 15577 TMT1-4 124.51 95.539 1088 1223.1 1307.9 955.24 855.64 1706.8 1027 1239 1321 960 916 1624 3 3 3 3 3 3 351860 6943 41 6883 10893;10894 14133;14134;14135 14133 3 GHFGPIHCVR Unmodified 1178.5767 0.57673075 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 8 0 1 29.577 29.577 4 0.0034683 5644 TMT1-7 74.464 59.95 83.436 131.89 111.95 117.45 141.65 134.54 79 131 116 116 145 130 2 2 2 2 2 2 8362.2 6944 3000 6884 10895 14136;14137 14136 2 GHFGPINSVAFHPDGK Unmodified 1678.8216 0.82158871 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 7 0 1 46.878 46.878 4 9.5093E-12 12268 TMT1-6 121.99 109.96 130.74 128.92 98.419 79.699 99.687 97.359 123 131 102 80 102 94 1 1 1 1 1 1 16703 6945 1695 6885 10896 14138 14138 1 GHFNIQPNKK Unmodified 1181.6305 0.63054046 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 1 9 0 1 35.443 35.443 4 0.010971 6569 TMT1-8 54.608 36.512 95.787 195.38 146.44 154.94 131.25 174.28 91 192 153 152 138 167 2 2 2 2 2 2 8770.8 6946 2867 6886 10897 14139;14140 14139 2 GHGAEGPQEPK Unmodified 1105.5152 0.51523593 2173 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 yes yes 0 0 0 0 0 3 0 1 24.581 24.581 3 0.010195 5192 TMT1-2 61.765 38.387 23.347 36.52 12.566 30.418 28.159 22.648 22 36 15 29 29 22 1 1 1 1 1 1 2202.8 6947 2173 6887 10898 14141 14141 1 GHGLTALPALPAR Unmodified 1272.7303 0.73025451 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 0 6 3.56 1 1 1 46.485 46.485 3 9.1587E-12 10261 TMT1-8 127.7 110.86 942.95 1204.1 1180.4 920 925 1257.1 891 1210 1200 922 966 1204 7 7 7 7 7 7 396780 6948 711 6888 10899;10900;10901 14142;14143;14144;14145;14146;14147;14148 14147 7 GHIAVSAAVFPTGTK Unmodified 1454.7882 0.78816332 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 49.496 49.496 3 9.5024E-06 11583 TMT1-8 87.447 49.678 99.475 122 129.76 93.318 89.879 121.09 94 123 131 94 94 116 1 1 1 1 1 1 10636 6949 2717 6889 10902 14149 14149 1 GHLEIGEK Unmodified 881.46068 0.46068117 2702 Q9NP81;Q9NP81-2 SARS2 Serine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 4 0 1 36.364 36.364 3 0.0013656 8880 TMT1-3 71.501 15.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6950 2702 6890 10903 14150 14150 1 GHLENNPALEK Unmodified 1220.6149 0.61494998 496 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 4 0 1 36.346 36.346 3 8.3164E-07 8867 TMT1-3 128.67 60.606 527.59 469.17 739.19 445.94 737.85 792.3 498 486 730 461 751 763 1 1 1 1 1 1 96699 6951 496 6891 10904 14151 14151 1 GHLLDSFAR Unmodified 1014.5247 0.52467841 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 44.955 44.955 3 0.00029803 11512 TMT1-6 118.06 99.283 60.952 117.37 116.05 47.48 71.575 75.776 58 116 116 51 73 73 1 1 1 1 1 1 11444 6952 2717 6892 10905 14152 14152 1 GHLSGLAK Unmodified 781.44464 0.44463717 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8.5 0.5 1 1 34.385 34.385 3 0.001013 6299 TMT1-8 98.523 40.356 293.63 342.04 313.27 294.85 357.75 397 277 345 322 293 368 382 2 2 2 2 2 2 24261 6953 1833 6893 10906;10907 14153;14154 14154 2 GHPDLQGQPAEEIFESVGDR Unmodified 2180.0134 0.013424818 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 2.5 0.5 1 1 58.579 58.579 3 2.4229E-13 18419 TMT1-1 83.776 79.132 70.023 103.03 46.315 52.344 33.951 68.321 66 102 51 51 37 65 2 2 2 2 2 2 11234 6954 1174 6894 10908;10909 14155;14156;14157 14155 3 GHPEFSTNR Unmodified 1043.4785 0.4784565 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 5.5 1.5 1 1 25.279 25.279 3 0.019814 4267 TMT1-6 57.598 34.042 42.302 54.706 57.52 39.07 64.941 36.523 40 55 58 40 65 36 2 2 2 2 2 2 3999 6955 1122 6895 10910;10911 14158;14159 14159 2 GHQAFDVGQPR Unmodified 1210.5843 0.58431855 659 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 0 5 0 1 31.475 31.475 3 0.0008813 6655 TMT1-4 61.577 43.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6956 659 6896 10912 14160 14160 1 GHQLLSADVDIK Unmodified 1294.6881 0.68811492 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 5 0 1 48.133 48.133 3 0.00014271 13253 TMT1-4 95.656 60.242 99.082 175.95 150.03 75.813 142.76 157.96 94 174 152 80 145 152 1 1 1 1 1 1 18420 6957 1129 6897 10913 14161 14161 1 GHQQLYWSHPR Unmodified 1407.6796 0.67961592 1426 P62273;P62273-2 RPS29 40S ribosomal protein S29 yes no 0 0 0 0 0 7 0 1 30.535 30.535 4 0.0022074 5950 TMT1-6 75.566 60.228 68.614 125.92 83.389 88.14 105.31 135.57 65 124 88 87 109 130 2 2 2 2 2 2 3680.9 6958 1426 6898 10914 14162;14163 14163 2 GHRPLDK Unmodified 821.45079 0.45078518 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 6 0 1 23.625 23.625 3 0.041107 4020 TMT1-5 65.038 39.099 294.33 347.22 191.56 226.71 240.37 464.31 277 348 207 222 255 442 1 1 1 1 1 1 15764 6959 438 6899 10915 14164 14164 1 GHTAAEASYAR Unmodified 1132.5261 0.52613497 20 B0I1T2;B0I1T2-4;B0I1T2-3 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 4.5 1.5 1 1 21.704 21.704 3 1.9082E-07 3999 TMT1-2 143.28 120.64 26.669 42.459 25.745 22.943 35.172 41.636 25 42 26 23 36 40 2 3 2 3 3 3 12269 6960 20 6900 10916;10917 14165;14166;14167 14165 3 GHTDSVQDISFDHSGK Unmodified 1728.7703 0.770341 1107 P43034;Q5IS43 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 0 4 0 1 38.368 38.368 4 2.4706E-05 9663 TMT1-3 81.409 75.738 130.28 190.22 124.83 108.62 163.7 174.42 123 189 131 109 167 168 1 1 1 1 1 1 19015 6961 1107 6901 10918 14168 14168 1 GHTELLTVEQALADFAELLR Unmodified 2225.1692 0.16919718 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 7 0 2 98.512 98.512 3;4 8.3106E-07 31976 TMT1-6 81.016 70.677 15.756 44.848 54.152 23.122 15.156 30.482 15 44 52 22 15 29 1 3 2 2 1 2 4554.6 6962 2866 6902 10919;10920 14169;14170;14171 14169 3 GHTESCSCPLQQSPR Unmodified 1742.7465 0.74645121 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 5 1 1 1 26.553 26.553 3 1.213E-10 5034 TMT1-3 121.18 114.77 14.511 0 0 0 0 15.99 14 0 0 0 0 15 2 0 0 0 0 1 4182 6963 322 6903 10921;10922 14172;14173 14172 2 GHTQQDPEVPK Unmodified 1234.5942 0.59421454 1510 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 0 0 0 0 0 3 0 1 29.672 29.672 3 3.5314E-05 7222 TMT1-2 109.24 78.905 54.111 73.344 40.619 51.98 71.368 75.781 51 73 44 51 73 73 1 1 1 1 1 1 7280.8 6964 1510 6904 10923 14174 14174 1 GHVDILAPTVQELAALEK Unmodified 1903.0415 0.041477469 2291 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 6 0 2 70.85 70.85 3;4 1.0245E-05 22353 TMT1-5 78.95 55.621 131.43 142.89 151.43 85.171 105.67 129.17 124 145 152 88 109 124 2 2 2 2 2 2 30837 6965 2291 6905 10924;10925 14175;14176 14175 2 GHVEPGEDDLETALR Unmodified 1636.7693 0.76927837 1228 P50583 NUDT2 Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] yes yes 0 0 0 0 0 2 0 1 45.874 45.874 3 8.6667E-05 13294 TMT1-1 82.102 60.229 30.636 35.387 50.926 44.417 34.038 45.933 29 36 51 44 36 44 1 1 1 1 1 1 9384.3 6966 1228 6906 10926 14177 14177 1 GHVFEESQVAGTPMFVVK Unmodified 1960.9717 0.97168334 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 7.67 0.471 1 2 60.176 60.176 3;4 2.3871E-10 17536 TMT1-6 110.12 83.648 269.96 393.12 281.4 166.8 351.27 360.94 255 391 290 174 355 348 3 3 3 3 3 3 41967 6967 685 6907 10927;10928;10929 14178;14179;14180 14178 3 GHYAYDCHR Unmodified 1177.4723 0.47232526 1895 Q16629-3;Q16629-2;Q16629-4;Q16629 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 0 3 0 1 21.007 21.007 4 0.011046 3933 TMT1-2 62.582 51.431 15.899 22.099 14.149 15.142 21.789 15.368 15 22 15 15 22 15 1 1 1 1 1 1 3084.6 6968 1895 6908 10930 14181 14181 1 GHYTEGAELIENVLEVVR Unmodified 2027.0324 0.032369346 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 5.6 1.02 1 1 2 1 76.563 76.563 3;4 1.8173E-36 24482 TMT1-4 189.81 170.23 409.48 483.55 418.99 365.34 400.94 476.58 386 487 431 364 415 457 7 8 8 8 8 7 201620 6969 2650 6909 10931;10932;10933;10934;10935 14182;14183;14184;14185;14186;14187;14188;14189 14184 8 GHYTEGAELVDSVLDVVR Unmodified 1957.9745 0.97452012 537;1493;1713 P07437;P68371;Q13509;Q13509-2 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain no no 0 0 0 0 0 4.6 2.06 1 1 1 1 1 71.772 71.772 3 1.3343E-31 22903 TMT1-3 179.14 146.44 423.62 637.4 578.75 359.25 450.68 681.11 401 635 587 368 469 651 9 9 9 9 9 9 347010 6970 537;1493;1713 6910 10936;10937;10938;10939;10940 14190;14191;14192;14193;14194;14195;14196;14197;14198 14192 9 GHYTEGAELVDSVLDVVRK Unmodified 2086.0695 0.069483134 537;1493;1713 P07437;P68371;Q13509;Q13509-2 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain no no 0 0 0 0 1 7 0 1 68.434 68.434 4 8.327E-06 20767 TMT1-6 77.468 58.93 53.892 80.288 71.655 50.336 60.429 152.85 51 80 73 51 65 145 1 1 1 1 1 1 5898.7 6971 537;1493;1713 6911 10941 14199 14199 1 GHYTIGK Unmodified 774.40244 0.40243801 1491;2068;1492;2510;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 0 0 0 0 0 7.8 1.17 1 1 1 2 33.013 33.013 2;3 0.0054939 5896 TMT1-8 85.849 37.942 2462.2 3447.1 3259 2413.6 3198.1 3701.6 2329 3447 3314 2441 3285 3558 7 7 7 7 7 7 305610 6972 622;1491;2068;2510;1492 6912 10942;10943;10944;10945;10946 14200;14201;14202;14203;14204;14205;14206 14206 7 GHYTVGK Unmodified 760.38679 0.38678794 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 0 7.5 1.5 1 1 29.534 29.534 3 0.0019072 6021 TMT1-5 110.63 70.588 315.22 311.78 317.81 255.45 404.25 344.51 297 318 323 258 409 334 3 3 3 3 3 3 25192 6973 2783 6913 10947;10948 14207;14208;14209 14207 3 GIAEQTVVTLR Unmodified 1185.6717 0.67173657 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 5 0 1 50.512 50.512 2 1.6042E-11 14196 TMT1-4 169.58 117.72 138.57 196.39 168.26 168.93 190.08 208.84 131 196 174 167 196 201 1 1 1 1 1 1 37414 6974 1723 6914 10949 14210 14210 1 GIAFAFNAK Unmodified 937.50215 0.50215205 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 9 0 1 60.687 60.687 2 0.0017798 15989 TMT1-8 114.78 60.375 77.545 71.249 71.416 65.192 84.905 90.319 73 73 73 65 87 87 1 1 1 1 1 1 6385.5 6975 2876 6915 10950 14211 14211 1 GIALIFNHER Unmodified 1168.6353 0.63529149 1317 P55212 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 yes yes 0 0 0 0 0 8 0 1 51.32 51.32 3 7.3317E-05 14134 TMT1-7 120.45 61.776 77.355 93.386 84.56 80.388 106.98 97.151 73 94 87 80 109 94 1 1 1 1 1 1 15251 6976 1317 6916 10951 14212 14212 1 GIALWGGEK Unmodified 929.49707 0.49706667 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 8 0 1 58.68 58.68 2 0.0065454 17006 TMT1-7 94.806 40.37 192.31 155.18 188.89 119.5 195.7 172.44 181 161 189 123 198 167 1 1 1 1 1 1 21506 6977 1328 6917 10952 14213 14213 1 GIAQMLEK Unmodified 888.47389 0.47388839 1485 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 0 7 0 1 57.143 57.143 2 0.0062714 16332 TMT1-6 107.47 70.896 107.89 168.42 118.96 78.12 118.56 189.56 102 167 123 80 123 181 1 1 1 1 1 1 16541 6978 1485 6918 10953 14214 14214 1 GIAWWTDK Unmodified 975.48142 0.48141661 2756 Q9NV96-3;Q9NV96-2;Q9NV96 TMEM30A Cell cycle control protein 50A yes no 0 0 0 0 0 8 0 1 64.313 64.313 2 0.0059255 19246 TMT1-7 112.17 60.317 224.13 297.84 310.3 234.6 257.87 400.92 212 299 314 236 270 383 1 1 1 1 1 1 16013 6979 2756 6919 10954 14215 14215 1 GIAYIEFK Unmodified 939.50657 0.50656873 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 62.137 62.137 2 0.00096559 18285 TMT1-6 146.35 108.22 597.85 1205.9 749.28 846.54 1082.7 1211 567 1183 797 834 1112 1165 2 2 2 2 2 2 189500 6980 786 6920 10955 14216;14217 14216 2 GICECGVCK Unmodified 1081.4355 0.43547075 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 5 0 1 40.247 40.247 2 0.00079397 10122 TMT1-4 128.69 109.96 191.44 176.52 316.17 197.06 375.63 342.13 181 183 311 204 379 331 1 1 1 1 1 1 38794 6981 500 6921 10956 14218 14218 1 GIDEGPEGLK Unmodified 1013.5029 0.50293991 2171 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein yes yes 0 0 0 0 0 3 0 1 47.467 47.467 2 0.036508 14264 TMT1-2 67.414 34.601 85.123 86.032 47.629 44.047 64.162 52.535 80 87 51 44 65 51 1 1 1 1 1 1 4873.5 6982 2171 6922 10957 14219 14219 1 GIDIIIEMLANVNLSK Unmodified 1741.9648 0.96480705 1620 Q08257;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 9 0 1 104.62 104.62 3 0.0017336 32634 TMT1-8 56.514 30.079 7.436 6.8325 6.8224 6.8274 22.171 15.357 7 7 7 7 22 15 1 1 1 1 1 1 1379.8 6983 1620 6923 10958 14220 14220 1 GIDLTQVK Unmodified 872.49673 0.49673232 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 53.405 53.405 2 0.00093995 14880 TMT1-6 111.95 49.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6984 631 6924 10959;10960 14221;14222 14222 2 GIDPFSLDALSK Unmodified 1261.6554 0.65541781 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 7 0 1 74.083 74.083 3 2.7738E-06 22949 TMT1-6 115.14 26.95 238.07 345.44 270.63 185.04 287.76 358.49 225 344 278 189 295 344 2 2 2 2 2 2 49675 6985 1068 6925 10961 14223;14224 14223 2 GIDQNMFQK Unmodified 1079.507 0.50697943 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 6.5 0.5 1 1 52.88 52.88 2;3 0.00021771 15280 TMT1-5 84.213 52.452 263.25 407.9 314.95 269.03 330.3 408.45 249 405 326 269 341 392 2 2 2 2 2 2 34427 6986 1067 6926 10962;10963 14225;14226;14227 14225 3 GIDSDASYPYK Unmodified 1214.5455 0.54553301 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 0 4 0 2 47.943 47.943 2;3 1.6084E-08 13475 TMT1-3 161.17 117.28 223.7 329.92 174.65 176.09 195.65 250.26 211 327 188 174 203 240 2 2 2 2 2 2 38006 6987 889 6927 10964;10965 14228;14229 14229 2 GIDVQQVSLVINYDLPTNR Unmodified 2143.1273 0.12733236 1358;1765 P60842;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 6 0 1 75.664 75.664 3 0.00036568 24215 TMT1-5 61.139 43.438 37.92 42.877 82.665 25.39 73.397 52.272 36 44 80 29 73 51 1 1 1 1 1 1 20514 6988 1358;1765 6928 10966 14230 14230 1 GIDVSLEEEHSVHDVAALLK Unmodified 2160.1063 0.10626257 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 5 0 1 65.161 65.161 4 8.3785E-06 19928 TMT1-4 75.91 58.628 61.655 56.733 49.149 52.032 41.551 60.642 58 58 51 51 44 58 1 1 1 1 1 1 5771.9 6989 161 6929 10967 14231 14231 1 GIEAVGGK Unmodified 729.4021 0.40210366 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 40.322 40.322 2 0.0061982 10140 TMT1-4 108.46 45.744 324.97 474.53 344.97 372.64 421.87 527.36 307 472 362 367 437 506 2 2 2 2 2 2 36381 6990 851 6930 10968;10969 14232;14233 14232 2 GIEDDLMDLIK Unmodified 1260.6272 0.62715415 2514 Q9BRF8;Q9BRF8-2 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes no 0 0 0 0 0 4 0 1 81.524 81.524 3 4.6905E-05 26614 TMT1-3 106.29 65.701 30.406 74.683 56.156 44.119 33.282 68.34 29 73 58 44 36 65 1 1 1 1 1 1 4564 6991 2514 6931 10970 14234 14234 1 GIEEEEILPGFILCDPNNLCHSGR Unmodified 2768.2898 0.28979937 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 0 4 0 1 73.412 73.412 4 0.0019691 23502 TMT1-3 42.106 35.602 23.215 36.153 35.035 36.607 34.69 37.386 22 36 36 36 36 36 1 1 1 1 1 1 4680.7 6992 718 6932 10971 14235 14235 1 GIEELFLDLCK Unmodified 1335.6744 0.67443869 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 0 6 0 1 83.555 83.555 3 0.00030509 27377 TMT1-5 97.456 78.628 84.606 99.706 122.83 86.339 76.091 105.49 80 101 123 87 80 101 2 2 2 2 2 2 10973 6993 2905 6933 10972 14236;14237 14237 2 GIEELFLDLCKR Unmodified 1491.7755 0.77554972 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 1 7 0 1 73.522 73.522 3 6.5989E-10 22797 TMT1-6 126.66 79.596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6994 2905 6934 10973 14238 14238 1 GIEESLRK Unmodified 930.51345 0.51344502 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 1 5.5 0.5 1 1 38.298 38.298 3 0.0040832 9509 TMT1-5 95.815 0 508.25 681.96 563.52 534.37 544.29 766.91 480 682 583 529 569 734 2 2 2 2 2 2 39513 6995 1909 6935 10974;10975 14239;14240 14240 2 GIEQAVQSHAVAEEEAR Unmodified 1822.881 0.88095408 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 2 0 1 42.657 42.657 3 1.9913E-24 11972 TMT1-1 145.04 111.19 61.21 94.348 92.164 80.245 90.48 121.07 58 94 94 80 94 116 2 2 2 2 2 2 24237 6996 1913 6936 10976 14241;14242 14241 2 GIFEPFGR Unmodified 921.47085 0.47085192 1779 Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 0 0 0 7 0 1 60.155 60.155 2 0.018154 17569 TMT1-6 90.308 43.496 108.16 130.31 106.41 71.013 129.39 127.43 102 131 109 73 131 123 1 1 1 1 1 1 11263 6997 1779 6937 10977 14243 14243 1 GIFPSGLFQGDTFR Unmodified 1540.7674 0.76742787 849 P22681 CBL E3 ubiquitin-protein ligase CBL yes yes 0 0 0 0 0 9 0 1 75.009 75.009 3 0.0039297 21625 TMT1-8 55.335 32.802 46.673 57.87 41.555 52.643 33.147 60.882 44 58 44 51 36 58 1 1 1 1 1 1 3954 6998 849 6938 10978 14244 14244 1 GIFPVLCK Unmodified 932.51536 0.51535927 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 9 0 2 65.168 65.168 2;3 0.0013103 17714 TMT1-8 93.262 50.016 394.85 624.68 373.9 557.56 667.89 548.05 373 618 405 542 681 532 2 2 2 2 2 2 158780 6999 706;707 6939 10979;10980 14245;14246 14245 2 GIFPVLCKDPVQEAWAEDVDLR Unmodified 2556.2683 0.2682593 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 6.17 0.687 1 3 2 78.481 78.481 3;4 2.3982E-36 24432 TMT1-6 144.72 113.33 748.1 1067.3 861.32 806.09 902.62 1117 707 1064 888 800 935 1072 8 8 7 8 8 8 449730 7000 706;707 6940 10981;10982;10983;10984;10985;10986 14247;14248;14249;14250;14251;14252;14253;14254 14254 8 GIFTSEIGTK Unmodified 1051.555 0.55497548 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 7 0 1 56.334 56.334 2 1.831E-05 16024 TMT1-6 152.11 101.23 76.62 162.57 149.53 107.55 142.37 127.06 73 160 152 109 145 123 1 1 1 1 1 1 13385 7001 1507 6941 10987 14255 14255 1 GIGLAIVR Unmodified 797.51232 0.51232281 735 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 0 0 0 0 8 0 1 52.851 52.851 2 0.030092 14706 TMT1-7 81.716 24.263 197.84 628.55 300.27 260.22 322.6 309.53 189 608 324 260 330 299 1 1 1 1 1 1 25542 7002 735 6942 10988 14256 14256 1 GIGTDEFTLNR Unmodified 1221.599 0.59896556 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 4 0 1 53.525 53.525 2 0.0018875 15626 TMT1-3 95.775 60.596 123.17 113.08 122.21 77.892 120.4 136.21 116 116 123 80 123 131 1 1 1 1 1 1 18695 7003 670 6943 10989 14257 14257 1 GIHEYDFEIK Unmodified 1249.5979 0.59790293 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 5 0 1 51.926 51.926 3 0.00012519 14731 TMT1-4 111.06 65.084 258.15 409.01 269.13 349.3 392.09 359.78 244 405 287 341 402 348 1 1 1 1 1 1 34174 7004 1773 6944 10990 14258 14258 1 GIHPTIISESFQK Unmodified 1455.7722 0.7721789 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 8.5 0.5 1 1 51.444 51.444 3 0.0011767 12331 TMT1-8 66.619 36.181 176.51 263.05 228.04 141.59 175.53 212.46 167 262 232 145 181 204 2 2 2 2 2 2 16118 7005 1233 6945 10991;10992 14259;14260 14260 2 GIHQSTIDLK Unmodified 1110.6033 0.60332266 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 0 7 1 1 1 40.391 40.391 3 0.00013024 10321 TMT1-5 82.171 57.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7006 1769 6946 10993;10994 14261;14262 14261 2 GIHSAIDASQTPDVVFASILAAFSK Unmodified 2544.3224 0.32240336 1303 P54819-2;P54819;P54819-5;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 9 0 3 93.825 93.825 3;4;5 8.3147E-23 28944 TMT1-8 107.47 84.593 138.7 196.74 146.86 163.1 160.68 189.43 131 196 154 160 167 182 4 4 4 4 4 4 67950 7007 1303 6947 10995;10996;10997 14263;14264;14265;14266 14266 4 GIHVEVPPAEAER Unmodified 1402.7205 0.72047768 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 2.33 0.471 2 1 41.452 41.452 3 0.00029004 11754 TMT1-2 84.892 77.348 244.76 449.49 320.21 291.24 411.44 422.12 232 443 334 291 420 407 5 5 5 5 5 5 32277 7008 1055 6948 10998;10999;11000 14267;14268;14269;14270;14271 14270 5 GIIDPTK Unmodified 742.4225 0.42250475 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 45.671 45.671 2 0.0291 12384 TMT1-5 91.065 20.797 339.98 792.24 436.93 429.23 550.13 707.05 323 773 467 426 568 678 1 1 1 1 1 1 143810 7009 638 6949 11001 14272 14272 1 GIIDSTVGEHR Unmodified 1182.5993 0.59929991 868 P23634-5;P23634-4;P23634-3;P23634-2;P23634-7;P23634-6;P23634-8;P23634 ATP2B4 Plasma membrane calcium-transporting ATPase 4 yes no 0 0 0 0 0 4 0 1 37.414 37.414 3 0.022669 9348 TMT1-3 52.247 22.437 153.32 221.58 192.68 168.1 156.53 303.61 145 221 198 167 167 289 1 1 1 1 1 1 18872 7010 868 6950 11002 14273 14273 1 GIIGYDV Unmodified 735.38031 0.38030558 319 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 0 4 0 1 64.205 64.205 2 0.025722 19925 TMT1-3 93.154 93.154 137.11 257.99 180.79 169.32 129.78 197.77 130 254 189 167 138 189 2 2 2 2 2 2 43865 7011 319 6951 11003 14274;14275 14275 2 GIIPLENLSIR Unmodified 1223.7238 0.72377215 198;1859 Q99418-2;O43739-2;Q99418;O43739;Q15438-3;Q15438-2;Q15438 CYTH2;CYTH3;CYTH1 Cytohesin-2;Cytohesin-3;Cytohesin-1 no no 0 0 0 0 0 7.5 0.5 1 1 67.984 67.984 2 0.00019907 20674 TMT1-7 108.4 75.768 122.05 274.02 173.36 146.07 168.83 188.13 116 268 182 146 174 181 2 2 2 2 2 2 24360 7012 198;1859 6952 11004;11005 14276;14277 14277 2 GIIWGEDTLMEYLENPK Unmodified 2006.9659 0.96592926 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 0 6 0 1 89.205 89.205 3 1.6714E-07 29417 TMT1-5 96.993 72.455 30.746 36.775 31.107 50.23 20.186 46.328 29 37 33 48 22 44 2 2 2 2 1 2 16378 7013 1533 6953 11006 14278;14279 14278 2 GIIWGEDTLMEYLENPKK Unmodified 2135.0609 0.060892282 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 1 7 0 1 81.412 81.412 3 8.5585E-08 25885 TMT1-6 98.507 87.45 68.626 102.21 101.4 55.745 85.34 90.307 65 102 102 58 87 87 1 1 1 1 1 1 15771 7014 1533 6954 11007 14280 14280 1 GIIYGTDGQEAPIYELTSQFTGLK Unmodified 2600.301 0.30099921 1799 Q14790-3;Q14790-2;Q14790;Q14790-4;Q14790-9 CASP8 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 yes no 0 0 0 0 0 7 0 1 87.8 87.8 3 3.2835E-06 28273 TMT1-6 66.467 66.465 7.3873 6.6972 15.113 15.217 14.749 7.0411 7 7 15 15 15 7 1 1 1 1 1 1 2683.5 7015 1799 6955 11008 14281 14281 1 GIKPVTLELGGK Unmodified 1210.7285 0.72852317 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 1 9 0 1 54.345 54.345 3 0.00024127 13512 TMT1-8 90.731 52.328 168.73 297.36 243.72 157.27 221.95 301.74 160 294 249 161 229 289 1 1 1 1 1 1 14899 7016 1171 6956 11009 14282 14282 1 GILAADESTGSIAK Unmodified 1331.6933 0.69325988 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 4 2.16 1 1 1 53.075 53.075 2;3 4.3414E-95 15225 TMT1-5 258.92 238.05 2126.9 2755.5 2318.7 1877.2 2445.2 2707.2 2008 2761 2383 1886 2509 2605 4 4 4 4 4 4 738690 7017 459 6957 11010;11011;11012 14283;14284;14285;14286 14286 4 GILAIAWSMADPELLLSCGK Unmodified 2144.101 0.10098296 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 9 0 1 102.46 102.46 4 0.0081957 31938 TMT1-8 42.633 30.865 15.976 6.1241 14.755 23.059 5.7192 15.827 15 7 15 22 7 15 1 1 1 1 1 1 2359.7 7018 336 6958 11013 14287 14287 1 GILAVLDEACSSAGTITDR Unmodified 1947.9572 0.95715549 20 B0I1T2;B0I1T2-4;B0I1T2-3 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 6 0 1 77.317 77.317 3 2.093E-17 24858 TMT1-5 119.8 115.9 38.275 27.677 35.798 29.195 19.567 61.27 36 29 36 29 22 58 1 1 1 1 1 1 10352 7019 20 6959 11014 14288 14288 1 GILCGLTQFTNK Unmodified 1350.6966 0.69657112 1775 Q14410 GK2 Glycerol kinase 2 yes yes 0 0 0 0 0 9 0 1 66.341 66.341 3 0.00038671 18243 TMT1-8 83.045 0 92.327 123.52 67.495 81.135 121.32 105.27 87 123 73 80 123 102 1 1 1 1 1 1 7395.6 7020 1775 6960 11015 14289 14289 1 GILDLNTYNVVK Unmodified 1347.7398 0.73981614 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 8 0 1 68.258 68.258 2 2.2847E-10 20812 TMT1-7 162.38 112.34 54.211 64.986 31.019 84.429 61.793 67.527 51 65 36 80 65 65 1 1 1 1 1 1 8969.4 7021 750 6961 11016 14290 14290 1 GILEQGWQADSTTR Unmodified 1560.7532 0.75323437 2480 Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 0 5 0 1 53.79 53.79 2 7.8102E-17 15530 TMT1-4 152.47 128.31 46.61 81.439 32.218 36.214 64.523 52.525 44 80 36 36 65 51 1 1 1 1 1 1 10484 7022 2480 6962 11017 14291 14291 1 GILEYLTVAEVVETMEDLVTYTK Oxidation (M) 2631.3241 0.32410242 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 1 0 0 7 1 1 1 101.51 101.51 4 1.8195E-06 32975 TMT1-7 73.405 46.132 58.25 85.575 56.075 52.427 56.741 44.219 55 85 59 52 58 43 5 5 5 5 5 5 2800.9 7023 776 6963 11018;11019 14292;14293;14294;14295;14296 14296 138 5 GILFVGSGVSGGEEGAR Unmodified 1590.8002 0.80018457 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 6.5 0.5 1 1 58.702 58.702 3 2.4225E-24 17520 TMT1-5 142.91 134.57 192.91 230.43 204.29 206.9 207.06 303.23 182 232 211 204 217 290 3 3 3 3 3 3 120530 7024 1260 6964 11020;11021 14297;14298;14299 14297 3 GILGNAIK Unmodified 784.48069 0.48068833 1048 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 0 0 8 0 1 51.809 51.809 2 0.0049659 14336 TMT1-7 121.29 26.623 191.31 294.88 237.42 202.36 285.6 276.47 181 293 245 203 291 267 1 1 1 1 1 1 22685 7025 1048 6965 11022 14300 14300 1 GILGQHQFLEGPEGIENTR Unmodified 2094.0494 0.049416394 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 5 0 1 55.723 55.723 3 0.040649 16280 TMT1-4 35.079 12.604 61.556 80.2 45.997 91.193 61.482 67.536 58 80 51 87 65 65 1 1 1 1 1 1 8088.7 7026 758 6966 11023 14301 14301 1 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK Unmodified 4035.8875 0.88750261 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 7 0.816 1 1 1 65.285 65.285 5 1.4532E-16 19563 TMT1-6 87.203 87.201 278.07 399.84 355.57 265.07 412.1 438.09 263 399 363 269 420 422 5 5 5 5 5 5 90065 7027 472 6967 11024;11025;11026 14302;14303;14304;14305;14306 14305 5 GILHSLFCCVCR Unmodified 1520.705 0.70504409 2603 Q9GZU7-3;Q9GZU7-2;Q9GZU7 CTDSP1 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 yes no 0 0 0 0 0 3 0 1 62.788 62.788 2 0.0045274 20293 TMT1-2 58.676 15.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7028 2603 6968 11027 14307 14307 1 GILLFGPPGTGK Unmodified 1155.6652 0.66519463 267;2923 O75351;Q6PIW4-2;Q6PIW4;Q9UN37 VPS4B;FIGNL1;VPS4A Vacuolar protein sorting-associated protein 4B;Fidgetin-like protein 1;Vacuolar protein sorting-associated protein 4A no no 0 0 0 0 0 9 0 2 68.354 68.354 2;3 0.00014943 18988 TMT1-8 91.937 68.509 170.03 171.47 131.93 140.11 152.3 220.58 160 174 138 138 159 211 2 2 2 2 2 2 42370 7029 267;2923 6969 11028;11029 14308;14309 14309 2 GILLFGTK Unmodified 847.51674 0.51673948 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 65.819 65.819 2 0.0017272 17986 TMT1-8 138.9 91.828 198.59 298.02 274.86 279.88 287.6 327.58 188 297 283 276 298 315 2 2 2 2 2 2 32839 7030 1194 6970 11030 14310;14311 14310 2 GILNGQK Unmodified 728.41809 0.41808807 2879 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 0 7 0 1 35.871 35.871 2 0.034328 7916 TMT1-6 88.734 10.986 219.02 218.86 154.05 278.43 282.21 334.13 206 222 167 268 293 321 1 1 1 1 1 1 25848 7031 2879 6971 11031 14312 14312 1 GILSGTSDLLLTFDEAEVR Unmodified 2035.0474 0.047350708 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 5.5 0.764 4 1 1 85.076 85.076 3;4 6.7367E-121 27652 TMT1-4 236.78 198.52 268.87 339.59 329.07 237.65 326.8 400.02 254 340 334 241 336 384 6 5 6 6 6 6 99466 7032 776 6972 11032;11033;11034;11035;11036;11037 14313;14314;14315;14316;14317;14318;14319;14320;14321 14314 9 GILSGTSDLLLTFDEAEVRK Unmodified 2163.1423 0.14231373 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 1 6.8 0.748 2 2 1 77.276 77.276 3;4 3.0871E-40 24837 TMT1-5 178.88 150.23 708.14 939.53 834.19 622.51 637.25 1048.9 669 941 852 626 671 1001 8 8 8 8 8 8 201370 7033 776 6973 11038;11039;11040;11041;11042 14322;14323;14324;14325;14326;14327;14328;14329 14322 8 GILTLPKPVHFK Unmodified 1348.8231 0.82309226 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 1 9 0 1 56.383 56.383 4 1.6096E-05 14336 TMT1-8 105.46 86.217 122.96 120.04 152.2 99.761 141.11 174 116 123 152 102 145 167 1 1 1 1 1 1 8732.9 7034 2194 6974 11043 14330 14330 1 GILTVDELLAIR Unmodified 1311.7762 0.77620165 680 P13473;P13473-2;P13473-3 LAMP2 Lysosome-associated membrane glycoprotein 2 yes no 0 0 0 0 0 7 0 1 80.314 80.314 2 3.0037E-08 25483 TMT1-6 137.46 84.293 68.65 109.83 90.903 111.15 136.45 81.386 65 109 95 109 138 80 2 2 2 2 2 2 16881 7035 680 6975 11044 14331;14332 14332 2 GINDGGDLPEELLR Unmodified 1496.7471 0.74708636 1859 Q15438-3;Q15438-2;Q15438 CYTH1 Cytohesin-1 yes no 0 0 0 0 0 2.5 0.5 1 1 64.673 64.673 2 0.00038285 20699 TMT1-1 87.831 66.383 54.223 57.465 35.357 76.794 47.192 76.471 51 58 36 73 51 73 2 2 1 2 2 2 7617.9 7036 1859 6976 11045;11046 14333;14334 14333 2 GINEGGDLPEELLR Unmodified 1510.7627 0.76273643 198 Q99418-2;O43739-2;Q99418;O43739 CYTH2;CYTH3 Cytohesin-2;Cytohesin-3 yes no 0 0 0 0 0 2 0 1 63.866 63.866 2 0.0020899 20380 TMT1-1 77.185 49.016 7.1554 37.351 28.116 22.109 13.883 23.056 7 36 29 22 15 22 1 1 1 1 1 1 3553.9 7037 198 6977 11047 14335 14335 1 GINTLVTYDMVPEPK Unmodified 1675.8491 0.84910859 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 0 6 0 1 68.286 68.286 2 1.1636E-18 21361 TMT1-5 162.93 136.25 54.158 73.474 32.652 36.336 56.675 67.673 51 73 36 36 58 65 1 1 1 1 1 1 12881 7038 815 6978 11048 14336 14336 1 GIPEDKNPFK Unmodified 1143.5924 0.59242362 1403 P61952;P63211;O14610 GNG11;GNGT1;GNGT2 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11;Guanine nucleotide-binding protein G(T) subunit gamma-T1;Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2 yes no 0 0 0 0 1 7 0 1 49.508 49.508 3 0.0089984 13238 TMT1-6 72.848 48.289 557.83 697.72 693.27 412.38 575.57 628.51 527 702 699 425 589 605 1 1 1 1 1 1 39780 7039 1403 6979 11049 14337 14337 1 GIPEFWFTIFR Unmodified 1411.7289 0.72885752 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 9 0 1 91.363 91.363 2 4.4503E-17 27940 TMT1-8 183.72 138.7 142.12 165.77 139.65 147.56 138.11 197.53 134 167 145 145 145 189 2 2 2 2 2 2 40853 7040 2488 6980 11050 14338;14339 14339 2 GIPEFWLTVFK Unmodified 1335.7227 0.72270951 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 0 9 0 2 89.255 89.255 2;3 5.8172E-22 27177 TMT1-8 187.64 138.29 536.23 796.12 813.38 646.53 530.38 930.41 508 795 825 645 566 887 4 4 4 4 4 4 305030 7041 1315;1316 6981 11051;11052 14340;14341;14342;14343 14343 4 GIPHLVTHDAR Unmodified 1214.652 0.65200419 1440 P62701;P22090;Q8TD47 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 0 6 0 1 32.644 32.644 4 1.8809E-05 7219 TMT1-5 112.13 84.387 84.386 177.88 93.638 126.34 133.88 135.83 80 174 102 123 138 131 1 1 1 1 1 1 43033 7042 1440 6982 11053 14344 14344 1 GIPLDFSSSLGIIVK Unmodified 1544.8814 0.881395 2800 Q9NZM1-4;Q9NZM1-8;Q9NZM1-7;Q9NZM1-5;Q9NZM1-6;Q9NZM1-3;Q9NZM1 MYOF Myoferlin yes no 0 0 0 0 0 9 0 1 83.15 83.15 3 6.7538E-06 24833 TMT1-8 90.412 58.569 30.771 35.765 27.781 29.087 50.742 36.928 29 36 29 29 51 36 1 1 1 1 1 1 2393.5 7043 2800 6983 11054 14345 14345 1 GIPNMLLSEEETES Unmodified 1547.7025 0.70250394 2875 Q9UI30;Q9UI30-2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 0 0 0 0 0 3 0 1 73.357 73.357 2 0.00016222 24413 TMT1-2 73.067 63.062 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7044 2875 6984 11055 14346 14346 1 GIQEEMEALVK Unmodified 1245.6275 0.6274885 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 4 0 1 66.67 66.67 3 0.00033464 20894 TMT1-3 96.64 37.099 145.92 219.16 176.51 122.38 139.78 182.56 138 218 181 124 145 175 2 2 2 2 2 2 15734 7045 1892 6985 11056 14347;14348 14348 2 GIQNDLTK Unmodified 887.47125 0.47124585 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 5.33 0.471 2 1 42.921 42.921 2;3 0.0015227 11297 TMT1-5 141.52 97.404 3627.9 4548.6 4781 3817.5 5500.3 6120.7 3429 4580 4845 3848 5627 5889 5 5 5 5 5 5 1109600 7046 372 6986 11057;11058;11059 14349;14350;14351;14352;14353 14352 5 GIRDNER Unmodified 858.43078 0.43077802 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 2.5 0.5 1 1 18.046 18.046 3 0.0013468 3178 TMT1-2 138.33 75.046 127.08 160.29 146.4 126.64 124.98 211.77 120 161 150 126 132 202 6 6 6 6 6 6 13315 + 7047 506 6987 11060;11061 14354;14355;14356;14357;14358;14359 14359 6 GIRPAINVGLSVSR Unmodified 1437.8416 0.84159587 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 9 0 1 48.642 48.642 3 1.8515E-12 11216 TMT1-8 128.46 96.319 161.54 180.93 108.96 109.51 166.45 154.08 152 182 116 109 169 149 1 1 1 1 1 1 48111 7048 888 6988 11062 14360 14360 1 GISDLAQHYLMR Unmodified 1402.7027 0.70271913 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 8 0.816 1 1 1 58.444 58.444 3 3.1458E-09 16865 TMT1-6 144.1 138.62 131.17 188.58 155.99 115.78 149.02 135.39 124 188 160 117 152 131 2 2 2 2 2 2 15982 7049 1178 6989 11063;11064;11065 14361;14362;14363 14361 3 GISDLVLK Unmodified 843.50657 0.50656873 928 P28288-2;P28288 ABCD3 ATP-binding cassette sub-family D member 3 yes no 0 0 0 0 0 7 0 1 60.433 60.433 2 0.014417 17653 TMT1-6 93.992 23.079 77.362 102.04 76.063 89.44 59.437 129.42 73 102 80 87 65 123 1 1 1 1 1 1 6906 7050 928 6990 11066 14364 14364 1 GISGEQSTEGSFPLR Unmodified 1563.7529 0.75290002 1797 Q14766;Q14766-4 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3 0 1 51.287 51.287 3 0.00094731 15731 TMT1-2 68.972 51.605 139.51 89.989 100.71 79.731 90.76 113.6 131 95 102 80 94 109 2 2 2 2 2 2 19687 7051 1797 6991 11067 14365;14366 14365 2 GISHVIVDEIHER Unmodified 1502.7841 0.78414057 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 3.33 0.471 2 1 43.955 43.955 3;4 5.9142E-11 11709 TMT1-3 131.13 109.37 161.22 226.47 123.06 266.09 223.24 210.03 152 225 138 254 232 203 3 3 3 3 3 3 46489 7052 1619 6992 11068;11069;11070 14367;14368;14369 14369 3 GISLANWMCLAK Oxidation (M) 1378.6737 0.67372718 1397 P61626 LYZ Lysozyme C yes yes 0 0 1 0 0 9 0 1 68.422 68.422 3 0.00040055 19097 TMT1-8 90.434 55.546 145.85 217.89 189.37 199.75 169.96 296.83 138 217 196 196 181 283 2 2 2 2 2 2 39754 7053 1397 6993 11071 14370;14371 14371 230 2 GISLANWMCLAK Unmodified 1362.6788 0.67881256 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 9 0 1 76.807 76.807 3 1.8171E-09 22391 TMT1-8 136.81 99.085 460.19 853.35 561.1 581.99 577.25 870.44 436 840 592 573 606 832 2 2 2 2 2 2 183810 7054 1397 6993 11072 14372;14373 14373 2 GISLNPEQWSQLK Unmodified 1498.778 0.77799256 1294 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 0 8 0 1 69.286 69.286 3 1.0561E-16 21214 TMT1-7 171.99 106.15 119.18 628.67 355.62 410.73 454.66 557.34 116 604 381 403 471 535 2 2 2 2 2 2 94594 7055 1294 6994 11073 14374;14375 14375 2 GISLNPEQWSQLKEQISDIDDAVR Unmodified 2740.3668 0.36678737 1294 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 1 6 0 1 80.623 80.623 4 2.9371E-05 26213 TMT1-5 64.069 55.781 15.733 29.19 36.182 21.076 43.231 53.132 15 29 36 22 44 51 1 1 1 1 1 1 6737.4 7056 1294 6995 11074 14376 14376 1 GISMSSSK Unmodified 795.37965 0.37965365 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 38.788 38.788 2 0.0040855 9228 TMT1-6 127.56 68.359 467.16 840.55 661.91 521.47 744.19 1024.5 443 830 682 526 768 981 3 3 3 3 3 3 134850 7057 3010 6996 11075;11076 14377;14378;14379 14378 3 GISNMLDVNGLFTLSHITQLVLSHNK Unmodified 2850.5062 0.50619816 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 0 0 0 9 0 2 90.315 90.315 4 4.1902E-40 26793 TMT1-8 133.76 115.04 191.52 285.74 210.39 165.61 232.75 311.03 181 284 218 167 240 298 4 4 4 4 4 4 26151 7058 1851 6997 11077;11078 14380;14381;14382;14383 14381 4 GISPVPINLR Unmodified 1064.6342 0.63422886 1226;1591 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 0 0 8 0 1 56.264 56.264 2 0.0006345 16042 TMT1-7 111.39 48.512 208.11 248.23 159.71 161.82 188.21 272.86 196 249 169 160 196 261 1 1 1 1 1 1 47658 7059 1226;1591 6998 11079 14384 14384 1 GISPYFGYSIAGNMDLDR Unmodified 1974.9146 0.9145624 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 72.977 72.977 3 0.00093261 23166 TMT1-5 60.253 49.786 61.859 42.189 27.275 28.29 94.738 66.587 58 44 29 29 94 65 1 1 1 1 1 1 12699 7060 856 6999 11080 14385 14385 1 GISQEQMNEFR Unmodified 1337.6034 0.60339901 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 5.25 2.28 1 1 1 1 45.791 45.791 2 1.0468E-53 12564 TMT1-3 232.46 161.6 689.62 773.43 661.22 456.33 664.93 830.63 650 781 676 465 683 797 4 4 4 4 4 4 275810 7061 672 7000 11081;11082;11083;11084 14386;14387;14388;14389;14390 14387 5 GISQEQMQEFR Unmodified 1351.619 0.61904908 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4 0 1 46.024 46.024 2 1.0313E-06 12694 TMT1-3 142.71 77.404 254.31 232.3 162.64 160.83 231.57 230.04 239 237 171 160 236 222 1 1 1 1 1 1 39372 7062 195 7001 11085 14391 14391 1 GISTKPVYIPEVELNHK Unmodified 1923.0466 0.046562847 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 1 8 0 1 54.835 54.835 4 0.0094238 15526 TMT1-7 50.722 42.534 223 200.44 221.83 263.05 187.84 361.34 210 206 228 256 203 344 1 1 1 1 1 1 9382.8 7063 1769 7002 11086 14392 14392 1 GISVHISNAEPK Unmodified 1250.6619 0.66190017 1674 Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 0 6 0 1 41.76 41.76 3 0.00010343 10841 TMT1-5 98.407 79.662 310.1 393.96 387.44 306.84 415.18 536.08 293 396 394 309 428 514 1 1 1 1 1 1 22278 7064 1674 7003 11087 14393 14393 1 GITAFIVEK Unmodified 976.55933 0.55933258 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 64.069 64.069 2 0.0013929 19118 TMT1-7 120.12 66.953 115.16 229.84 107.32 85.723 158.01 157.52 109 225 116 87 160 152 1 1 1 1 1 1 26840 7065 898 7004 11088 14394 14394 1 GITFDSGGISIK Unmodified 1193.6292 0.62920306 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 7.5 0.5 1 1 63.697 63.697 2 8.1029E-14 18937 TMT1-6 176.95 102.57 237.94 359.09 281.76 208.16 243.25 374.69 225 357 290 210 254 358 2 2 2 2 2 2 41951 7066 932 7005 11089;11090 14395;14396 14395 2 GITGVDLFGTTDAVVK Unmodified 1591.8457 0.84573777 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 6 0 1 72.15 72.15 3 8.0801E-15 22875 TMT1-5 107.74 75.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7067 1287 7006 11091 14397 14397 1 GITGVEDK Unmodified 817.41815 0.41814765 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 4 0 1 41.343 41.343 2 0.0059419 10865 TMT1-3 111.95 41.035 299.98 316.51 350.91 382.23 474.34 357.43 283 322 359 377 482 348 1 1 1 1 1 1 34573 7068 937 7007 11092 14398 14398 1 GITINAAHVEYSTAAR Unmodified 1672.8533 0.85328277 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 6.5 1.5 1 1 44.76 44.76 3 1.2186E-08 11934 TMT1-4 108.25 83.07 176.68 290.52 175.52 239.19 208.49 248.82 167 287 189 232 218 239 2 2 2 2 2 2 43109 7069 1180 7008 11093;11094 14399;14400 14399 2 GITMATAK Unmodified 791.42112 0.42112454 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 8 0.816 1 1 1 43.026 43.026 2 0.00019963 10803 TMT1-6 153.71 79.376 2255.1 2745.5 2593.8 2138.4 2447.9 3285.9 2129 2764 2648 2140 2542 3148 4 4 4 4 4 4 474710 7070 3010;3014 7009 11095;11096;11097 14401;14402;14403;14404 14401 4 GITNLCVIGGDGSLTGANLFR Unmodified 2134.0841 0.08408734 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 8.5 0.5 1 1 75.915 75.915 3 2.0022E-15 21949 TMT1-8 100.47 80.375 92.073 139 96.936 79.517 114.06 105.48 87 138 101 80 116 102 2 2 2 2 2 2 58504 7071 1559 7010 11098;11099 14405;14406 14406 2 GITSFLVDR Unmodified 1006.5447 0.54474515 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 61.208 61.208 2 0.040465 17962 TMT1-6 69.812 25.365 92.296 100.77 91.988 72.022 121.48 112.73 87 102 94 73 123 109 1 1 1 1 1 1 12843 7072 1120 7011 11100 14407 14407 1 GIVDQSQQAYQEAFEISK Unmodified 2039.98 0.97999942 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 0 4.33 1.6 1 1 3 1 67.758 67.758 3;4 7.748E-27 21058 TMT1-4 157.11 133.07 2115 3064 2434.7 2016.6 2627.7 3115.6 1999 3052 2513 2023 2703 2993 12 12 12 12 12 12 1146400 7073 1471 7012 11101;11102;11103;11104;11105;11106 14408;14409;14410;14411;14412;14413;14414;14415;14416;14417;14418;14419 14414 12 GIVDQSQQAYQEAFEISKK Unmodified 2168.075 0.074962442 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 1 6 0 2 62.964 62.964 3;5 1.6295E-06 19306 TMT1-5 83.849 69.595 161.63 181.2 92.934 128.94 56.249 199.87 152 182 102 124 66 189 2 2 2 2 2 2 61084 7074 1471 7013 11107;11108 14420;14421 14421 2 GIVEFASK Unmodified 849.45962 0.45961853 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 7 0 1 53.122 53.122 2 0.01418 14796 TMT1-6 94.302 33.62 371.8 505.86 382.32 288.38 425.04 426 351 505 395 292 433 411 1 1 1 1 1 1 68232 7075 857 7014 11109 14422 14422 1 GIVEFASKPAAR Unmodified 1244.6877 0.68772099 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 1 8 0 1 46.271 46.271 3 0.0006406 12094 TMT1-7 88.163 65.151 195.46 633.46 334.78 304.88 221.06 556.54 187 613 358 301 243 528 1 1 1 1 1 1 37548 7076 857 7015 11110 14423 14423 1 GIVEFSGK Unmodified 835.44397 0.44396847 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 7 0 1 51.08 51.08 2 0.032606 13940 TMT1-6 79.906 34.189 280.1 325.8 257.8 251.74 268.35 255.64 264 328 268 249 276 247 1 1 1 1 1 1 20774 7077 1837 7016 11111 14424 14424 1 GIVEFSGKPAAR Unmodified 1230.6721 0.67207093 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 1 8 0 1 44.03 44.03 3 6.9369E-08 11265 TMT1-7 127.03 79.74 306.73 420.76 389.14 402.95 413.8 447.64 290 421 401 397 428 431 1 1 1 1 1 1 57000 7078 1837 7017 11112 14425 14425 1 GIVFEDVK Unmodified 905.48583 0.48583328 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 56.762 56.762 2 0.00492 16625 TMT1-4 121.62 50.7 91.935 138.62 120.5 85.34 136.57 112.3 87 138 123 87 138 109 1 1 1 1 1 1 12964 7079 653 7018 11113 14426 14426 1 GIVGHVAALGEPLNIK Unmodified 1586.9144 0.91442646 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 8 0 1 59.769 59.769 4 5.5381E-09 17514 TMT1-7 111.94 89.057 100.58 114.47 130.18 93.973 111.82 151.38 95 116 131 95 116 145 2 2 2 2 2 2 21041 7080 322 7019 11114 14427;14428 14428 2 GIVGHVAALGEPLNIKDAYEDPR Unmodified 2433.2652 0.26522283 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 1 6 0 1 60.236 60.236 4 0.00016001 18127 TMT1-5 57.366 47.384 168.23 287.15 156.49 137.66 204.75 250 159 283 167 138 210 240 2 2 2 2 2 2 23127 7081 322 7020 11115 14429;14430 14429 2 GIVISFDAR Unmodified 976.53418 0.53418046 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 7 0 1 58.708 58.708 2 0.0029188 16944 TMT1-6 102.77 58.657 277.07 432.51 314.59 315.17 377.43 466.8 262 429 329 312 390 448 2 2 2 2 2 2 44908 7082 2407 7021 11116 14431;14432 14431 2 GIVLLEELLPK Unmodified 1222.7537 0.75367529 2996 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 0 7 0 2 86.935 86.935 2;3 0.00013708 27873 TMT1-6 111.46 91.314 99.075 177.01 150.39 90.57 170.58 211.53 94 175 153 94 174 203 2 2 2 2 2 2 31266 7083 2996 7022 11117;11118 14433;14434 14433 2 GIVNEQFLLQR Unmodified 1315.7248 0.72483478 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 59.926 59.926 2 1.8279E-08 17431 TMT1-6 160.33 130.92 77.221 132.95 73.491 105.57 81.73 128.79 73 131 80 102 87 123 1 1 1 1 1 1 22467 7084 1194 7023 11119 14435 14435 1 GIVPLAK Unmodified 696.45341 0.45341094 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6 3.56 1 1 1 51.559 51.559 2 0.00292 14117 TMT1-7 140.79 71.351 1999.4 2259.2 2164.6 1818.1 2123.2 2353.9 1886 2284 2210 1818 2187 2265 4 4 4 4 4 4 295640 7085 955 7024 11120;11121;11122 14436;14437;14438;14439 14437 4 GIVQSEEK Unmodified 888.45526 0.45526144 2359 Q96A65 EXOC4 Exocyst complex component 4 yes yes 0 0 0 0 0 4 0 1 36.609 36.609 2 0.020224 9002 TMT1-3 88.819 62.217 30.438 58.583 64.403 50.693 64.407 36.538 29 58 65 51 65 36 1 1 1 1 1 1 5239 7086 2359 7025 11123 14440 14440 1 GIVSKDEITFVSGAPR Unmodified 1674.8941 0.89408495 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 7 0 2 55.728 55.728 3 1.1746E-19 15737 TMT1-6 126.63 97.657 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7087 856 7026 11124;11125 14441;14442 14441 2 GIVSLSDILQALVLTGGEK Unmodified 1912.0881 0.088093311 1299 P54619-2;P54619;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 0 9 0 2 102.9 102.9 3;4 3.2744E-28 32199 TMT1-8 142.4 123.81 111.33 118.09 124.71 89.323 143.97 104.62 105 120 126 91 145 102 3 3 3 3 3 3 13736 7088 1299 7027 11126;11127 14443;14444;14445 14444 3 GIVVGIK Unmodified 684.45341 0.45341094 609 P09972;P05062 ALDOC;ALDOB Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase B yes no 0 0 0 0 0 9 0 1 51.782 51.782 2 0.013813 12460 TMT1-8 106.84 12.686 169.19 239.27 216.2 148.96 228.22 221.61 160 239 220 152 232 214 1 1 1 1 1 1 18638 7089 609 7028 11128 14446 14446 1 GIWEHQFLVQNTTEKPFR Unmodified 2229.1331 0.13308644 1159 P48595 SERPINB10 Serpin B10 yes yes 0 0 0 0 1 8 0 1 57.089 57.089 4 5.4473E-05 16391 TMT1-7 77.051 50.458 114.69 272.79 149.31 154.13 165.27 280.97 109 266 160 152 174 268 1 1 1 1 1 1 16789 7090 1159 7029 11129 14447 14447 1 GIWLEAGK Unmodified 872.4756 0.47560295 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 57.556 57.556 2;3 3.2378E-05 16408 TMT1-6 162.97 87.588 2309.9 2809.2 2889.4 2065.1 2733 3184 2182 2832 2922 2094 2808 3060 3 3 3 3 3 3 453980 7091 3010 7030 11130;11131 14448;14449;14450 14448 3 GIYAYGFEKPSAIQQR Unmodified 1826.9315 0.93153309 1358;1765;1059 P60842;P60842-2;P38919;Q14240;Q14240-2 EIF4A1;EIF4A3;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 1 8.5 0.5 1 1 54.156 54.156 3 6.0713E-17 13405 TMT1-8 130.23 101.42 569.14 865 633.92 595.29 801.56 808.61 538 859 661 593 819 780 3 3 3 3 3 3 153420 7092 1358;1059;1765 7031 11132;11133 14451;14452;14453 14453 3 GIYFADMVSK Unmodified 1129.5478 0.54778161 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 8 0 1 65.013 65.013 3 0.00085134 19491 TMT1-7 93.111 64.712 68.77 133.91 50.336 90.669 75.599 114.04 65 131 58 87 80 109 1 1 1 1 1 1 7800.4 7093 606 7032 11134 14454 14454 1 GIYQSLEGAVQAGQLK Unmodified 1660.8784 0.87843489 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 66.847 66.847 3 8.8403E-17 20151 TMT1-6 141 113.67 184.6 208.03 177.06 144.85 222.25 187.67 174 210 182 146 225 182 2 2 2 2 2 2 53048 7094 1833 7033 11135 14455;14456 14455 2 GIYTGLSAGLLR Unmodified 1219.6925 0.69247202 1575 Q02978 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 0 0 0 0 0 9 0 1 63.387 63.387 2 1.1936E-08 17054 TMT1-8 136.96 73.748 214.67 296.9 277 231.35 304.05 339.91 203 297 283 232 312 327 2 2 2 2 2 2 26900 7095 1575 7034 11136 14457;14458 14458 2 GIYVIQAPK Unmodified 987.57532 0.57531699 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 8 0 1 54.861 54.861 2 0.00074427 15531 TMT1-7 129.4 60.976 77.337 85.781 94.022 48.247 100.58 113.32 73 87 94 51 102 109 1 1 1 1 1 1 6986.2 7096 1999 7035 11137 14459 14459 1 GKATISNDGATILK Unmodified 1387.7671 0.76709352 2496 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 7 0 1 46.271 46.271 3 0.00016435 12047 TMT1-6 71.114 22.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7097 2496 7036 11138 14460 14460 1 GKCECGSCVCIQPGSYGDTCEK Unmodified 2550.9906 0.99059894 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 5 0 2 43.924 43.924 3;4 3.4777E-18 11603 TMT1-4 115.55 104.24 514.7 843.82 783.89 760.82 823.39 834.63 488 838 805 753 848 805 2 2 2 2 2 2 92419 7098 484 7037 11139;11140 14461;14462;14463 14461 3 GKDAFPVAGQK Unmodified 1116.5928 0.59275797 1302 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 0 1 7.5 0.5 1 1 41.981 41.981 3 0.0024252 10393 TMT1-6 83.047 47.633 655.5 865.08 726.26 455.45 679.94 790.76 619 866 741 468 696 760 3 3 3 3 3 3 48704 7099 1302 7038 11141;11142 14464;14465;14466 14464 3 GKDCAVIVTQK Unmodified 1217.6438 0.64380726 1361 P60900;P60900-2 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 1 7 0 1 40.949 40.949 3 0.0018341 9928 TMT1-6 86.467 30.242 288.29 364.05 291.21 202.28 351.77 359.86 272 365 299 207 357 347 1 1 1 1 1 1 36321 7100 1361 7039 11143 14467 14467 1 GKDLIGVQNLLK Unmodified 1296.7765 0.776536 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 9 0 1 61.018 61.018 3 6.1235E-06 16117 TMT1-8 106.61 68.654 176.33 297.09 229.59 206.85 246.1 354.35 167 294 238 206 256 339 1 1 1 1 1 1 20046 7101 1737 7040 11144 14468 14468 1 GKDSLSDDGVDLK Unmodified 1347.6518 0.65178899 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 1 4.5 0.5 1 1 47.385 47.385 3 0.0015017 13233 TMT1-3 76.85 28.109 347.49 466.49 353.14 391.97 355.86 504.72 328 466 370 384 374 483 2 2 2 2 2 2 35868 7102 550 7041 11145;11146 14469;14470 14469 2 GKEDFLSVSDIIDYFR Unmodified 1902.9363 0.9363437 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 7.33 0.471 2 1 83.512 83.512 3;4 0.0010937 26674 TMT1-7 69.069 55.882 200.7 191.83 190.29 183.6 211.82 226.34 189 196 195 182 218 218 3 3 3 3 3 3 68831 7103 1669 7042 11147;11148;11149 14471;14472;14473 14473 3 GKEESLDSDLYAELR Unmodified 1723.8265 0.8264589 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 1 3.69 1.45 1 2 4 6 1 1 1 55.885 55.885 2;3;4 2.1454E-52 16439 TMT1-3 222.94 148.09 30235 41142 34840 27211 43509 44127 28565 41131 35742 27544 44239 42560 34 34 34 34 34 34 6676200 7104 448 7043 11150;11151;11152;11153;11154;11155;11156;11157;11158;11159;11160;11161;11162;11163;11164;11165 14474;14475;14476;14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497;14498;14499;14500;14501;14502;14503;14504;14505;14506;14507 14500 34 GKELSGLGSALK Unmodified 1158.6608 0.66083754 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 1 8 0 1 49.515 49.515 3 0.021953 13399 TMT1-7 56.514 20.097 152.65 317.93 223.98 210.27 198.06 317.35 145 312 234 208 209 303 1 1 1 1 1 1 21795 7105 1194 7044 11166 14508 14508 1 GKEVPFFSVLLFAR Unmodified 1608.9028 0.90279914 2371 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 1 9 0 1 78.669 78.669 3 0.02927 23081 TMT1-8 43.592 22.035 77.819 32.079 58.506 43.393 64.449 45.065 73 36 58 44 65 44 1 1 1 1 1 1 4969.4 7106 2371 7045 11167 14509 14509 1 GKFNTSDVSAIEK Unmodified 1394.7042 0.70415892 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 7 0 1 47.923 47.923 3 0.00018386 12723 TMT1-6 91.789 52.128 343.67 626.04 499.04 424.09 452.39 544.61 326 618 515 423 469 523 1 1 1 1 1 1 60720 7107 787 7046 11168 14510 14510 1 GKFPVQLENVDSFVELGQVALR Unmodified 2444.3064 0.30635936 2298 Q92542-2;Q92542 NCSTN Nicastrin yes no 0 0 0 0 1 8 0 1 79.562 79.562 3 4.3022E-06 25201 TMT1-7 66.448 58.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7108 2298 7047 11169 14511 14511 1 GKFQDNFEFVQWFK Unmodified 1818.873 0.87295558 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 1 9 0 3 74.218 74.218 3;4 0.0043745 21290 TMT1-8 58.752 32.023 99.006 214.59 130.01 133.22 117.6 143.75 94 210 138 131 123 138 1 1 1 1 1 1 19807 7109 1868 7048 11170;11171;11172 14512;14513;14514 14512 3 GKGASGSFVVVQK Unmodified 1262.6983 0.69828568 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 1 9 0 1 44.023 44.023 3 0.0021232 9482 TMT1-8 63.79 27.831 123.22 144.52 87.105 119.22 126.36 150.96 116 145 94 116 131 145 1 1 1 1 1 1 11960 7110 1970 7049 11173 14515 14515 1 GKGFSVVADTPELQR Unmodified 1602.8366 0.83657007 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 1 7 0 1 49.639 49.639 3 2.9187E-10 13373 TMT1-6 118.31 98.671 162.97 228.47 187.53 151.98 158.34 272.64 154 228 193 152 167 260 1 1 1 1 1 1 36053 7111 1801 7050 11174 14516 14516 1 GKGGEIQPVSVK Unmodified 1197.6717 0.67173657 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 7 0 1 40.713 40.713 3 0.00046678 9824 TMT1-6 90.367 50.786 283.35 381.99 384.05 159.24 253.92 434.08 268 383 384 171 264 414 1 1 1 1 1 1 70538 7112 1395 7051 11175 14517 14517 1 GKINSITVDNCK Unmodified 1347.6816 0.68164933 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 7.5 0.5 1 1 42.456 42.456 3 5.9636E-08 10466 TMT1-7 109.84 97.862 108.22 99.196 121.69 109.94 103.5 159.08 102 102 123 109 109 152 1 1 1 1 1 1 7621 7113 1555;1556 7052 11176;11177 14518;14519 14519 2 GKINSITVDNCKK Unmodified 1475.7766 0.77661235 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 2 9 0 1 39.915 39.915 4 0.00095778 8103 TMT1-8 82.651 62.812 198.37 183.91 227.66 181.35 155.12 327.1 187 189 229 181 167 311 1 1 1 1 1 1 10356 7114 1555;1556 7053 11178 14520 14520 1 GKLDGNQDLIR Unmodified 1227.6571 0.65714914 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 6 0 1 41.318 41.318 3 0.00012981 10690 TMT1-5 103.88 61.785 1967.1 3018.6 2438.1 1824.5 2428.8 2919.8 1861 3000 2505 1844 2498 2804 1 1 1 1 1 1 228910 7115 1164 7054 11179 14521 14521 1 GKLDVQFSGLTK Unmodified 1291.7136 0.71360139 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6.5 3.2 1 2 1 55.762 55.762 3;4 1.5152E-09 15736 TMT1-7 152.16 96.711 10075 14619 12232 8838.6 11473 15044 9526 14570 12526 8951 11851 14420 7 7 7 7 7 7 998630 7116 831 7055 11180;11181;11182;11183 14522;14523;14524;14525;14526;14527;14528 14523 7 GKLEAIITPPPAK Unmodified 1333.7969 0.79693709 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 1 8.33 0.471 2 1 54.619 54.619 3;4 0.0016365 15345 TMT1-7 64.104 43.151 185.18 163.24 117.22 139.56 227.7 249.34 174 167 124 138 232 240 2 2 2 2 2 2 19881 7117 268 7056 11184;11185;11186 14529;14530;14531 14530 3 GKLPGPTLWASYSLEYGK Unmodified 1966.02 0.020013746 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 1 9 0 1 67.328 67.328 4 2.622E-08 18588 TMT1-8 86.455 47.236 84.164 216.12 98.549 134.66 141.12 127.09 80 210 109 131 145 123 1 1 1 1 1 1 27451 7118 541 7057 11187 14532 14532 1 GKNVLINK Unmodified 884.54435 0.54435122 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 9 0 1 41.023 41.023 3 0.0030282 8438 TMT1-8 83.005 24.365 544.57 911.24 576.86 602.24 438.69 1009.8 515 900 611 590 479 959 2 2 2 2 2 2 52930 7119 918 7058 11188 14533;14534 14533 2 GKPAAPGGAGNTGTK Unmodified 1282.663 0.6629628 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 1 8 0 1 31.336 31.336 3 0.00014532 6303 TMT1-7 82.822 53.481 30.593 43.904 50.798 35.811 27.105 46.131 29 44 51 36 29 44 1 1 1 1 1 1 4552 7120 1744 7059 11189 14535 14535 1 GKPIFEVNK Unmodified 1030.5811 0.58113065 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 1 8 0 1 47.235 47.235 3 0.0043766 12510 TMT1-7 85.355 53.982 288.79 401.25 355.37 242.12 354.92 367.24 273 401 362 247 362 354 1 1 1 1 1 1 7107.6 7121 2029 7060 11190 14536 14536 1 GKPLPEYHVR Unmodified 1194.6509 0.65094155 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 7 0 1 35.333 35.333 4 0.037104 7691 TMT1-6 50.297 29.395 100.68 162.24 72.711 80.977 113.22 127.89 95 160 80 80 116 123 2 2 2 2 2 2 7913.4 7122 1507 7061 11191 14537;14538 14537 2 GKPYLTLEQLMDFINQK Unmodified 2037.0605 0.060498352 1562 Q01970-2;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 0 0 1 9 0 1 85.706 85.706 4 8.96E-07 25798 TMT1-8 76.151 54.552 23.101 59.581 34.316 21.203 42.419 76.608 22 58 36 22 44 73 1 1 1 1 1 1 2939.1 7123 1562 7062 11192 14539 14539 1 GKQSLETICLLLAYK Unmodified 1735.9542 0.95424237 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 1 9 0 1 73.28 73.28 3 1.2232E-05 20975 TMT1-8 87.932 60.597 61.251 103.1 77.854 49.655 76.971 128.92 58 102 80 51 80 123 1 1 1 1 1 1 8618.6 7124 1044;1413;1414 7063 11193 14540 14540 1 GKWNEPFDETYTR Unmodified 1641.7423 0.74233534 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 1 6 0 1 49.763 49.763 3 0.0002207 14049 TMT1-5 91.032 73.115 122.7 166.81 156.01 145.44 198.93 195.8 116 167 160 145 203 189 1 1 1 1 1 1 15794 7125 1222 7064 11194 14541 14541 1 GLAAHYFFPR Unmodified 1177.6033 0.60326308 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 50.945 50.945 3 0.00017237 12162 TMT1-8 106.42 75.349 37.921 65.546 63.244 66.497 41.399 45.723 36 65 65 65 44 44 1 1 1 1 1 1 10549 7126 51 7065 11195 14542 14542 1 GLAFIQDPDGYWIEILNPNK Unmodified 2302.1634 0.16338352 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 0 7 0 2 90.925 90.925 3;4 6.9061E-10 29526 TMT1-6 95.205 81.73 108.15 114.12 120.45 142.09 141.53 135.61 102 116 124 139 146 131 3 3 3 3 3 3 40365 7127 1586 7066 11196;11197 14543;14544;14545 14545 3 GLAGAVSELLR Unmodified 1084.6241 0.6240581 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.4 2.8 1 2 1 1 68.778 68.778 2 2.811E-32 20768 TMT1-6 215.42 112.64 8028.3 10462 9690.6 6929.4 9110.6 11596 7585 10494 9859 7025 9395 11122 10 10 10 10 10 10 2435300 7128 3010 7067 11198;11199;11200;11201;11202 14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556 14548 11 GLAGEIVGEVR Unmodified 1098.6033 0.60332266 2459 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 yes yes 0 0 0 0 0 4 0 1 54.681 54.681 2 4.971E-05 16119 TMT1-3 92.538 33.946 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7129 2459 7068 11203 14557 14557 1 GLAGLGDVAEVR Unmodified 1155.6248 0.62478638 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 4.5 0.5 1 1 56.022 56.022 2 2.3477E-13 16381 TMT1-4 171.33 143.45 339.4 362.67 358.57 265.14 340.83 350.58 320 368 364 268 349 338 2 2 2 2 2 2 119060 7130 648 7069 11204;11205 14558;14559 14559 2 GLAITFVSDENDAK Unmodified 1478.7253 0.72528829 1738;40 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 5.33 0.471 2 1 63.278 63.278 2;3 1.3265E-14 19385 TMT1-5 140.24 123.61 162.08 218.26 165.41 200.72 194.01 265.23 153 218 174 196 203 254 3 3 3 3 3 3 80511 7131 40;1738 7070 11206;11207;11208 14560;14561;14562 14562 3 GLALALFGGEPK Unmodified 1171.6601 0.66010926 1193 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 0 9 0 1 72.517 72.517 2 1.3954E-06 20691 TMT1-8 113.62 81.152 23.256 36.265 28.15 20.979 73.856 44.796 22 36 29 22 73 44 1 1 1 1 1 1 2693.7 7132 1193 7071 11209 14563 14563 1 GLALDGK Unmodified 672.38064 0.38063993 1179;990 P49407-2;P49407;P36575-2;P36575;P32121-5;P32121-2;P32121;P32121-3;P32121-4 ARRB1;ARR3;ARRB2 Beta-arrestin-1;Arrestin-C;Beta-arrestin-2 no no 0 0 0 0 0 6 0 1 45.564 45.564 2 0.044402 12380 TMT1-5 84.244 0 865.8 1398.8 1177.1 861.36 1205.5 1178.7 820 1388 1205 873 1229 1138 1 1 1 1 1 1 61852 7133 1179;990 7072 11210 14564 14564 1 GLALGIAK Unmodified 741.47487 0.47487467 1160 P48637 GSS Glutathione synthetase yes yes 0 0 0 0 0 9 0 1 54.655 54.655 2 0.0071035 13579 TMT1-8 117.7 45.678 299.56 406.03 344.31 336.89 406.52 443.58 283 406 356 334 418 427 2 2 2 2 2 2 17022 7134 1160 7073 11211 14565;14566 14565 2 GLAPDLPEDLYHLIK Unmodified 1692.9087 0.90867238 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 6 0 1 76.765 76.765 3 2.6713E-11 24730 TMT1-5 127.71 70.033 192.06 387.8 213.51 298.12 325.49 357.42 182 380 232 290 336 344 2 2 2 2 2 2 56281 7135 1427 7074 11212 14567;14568 14568 2 GLAPEVADR Unmodified 926.48214 0.48214489 664 P12081-4;P12081;P12081-3;P12081-2;P49590-2;P49590 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 39.269 39.269 2 0.0019128 10715 TMT1-1 110.41 28.624 192.42 201.91 129.68 146.99 200.18 157.39 181 204 138 145 203 153 2 2 2 2 2 2 24428 7136 664 7075 11213;11214 14569;14570 14569 2 GLATFCLDK Unmodified 1023.5059 0.5059168 58;132 O15173;O15173-2;O00264 PGRMC2;PGRMC1 Membrane-associated progesterone receptor component 2;Membrane-associated progesterone receptor component 1 no no 0 0 0 0 0 7.5 0.5 1 1 60.152 60.152 2;3 0.0023904 17618 TMT1-7 85.731 53.796 315.06 331.85 327.65 250.44 348.97 316.24 297 337 333 253 355 306 2 2 2 2 2 2 22209 7137 132;58 7076 11215;11216 14571;14572 14572 2 GLATVIR Unmodified 728.45447 0.45447358 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 43.861 43.861 2 0.0088724 11071 TMT1-6 114.72 26.371 61.374 87.25 70.541 65.121 91.432 113.58 58 87 73 65 94 109 1 1 1 1 1 1 8173.8 7138 2071 7077 11217 14573 14573 1 GLAVFISDIR Unmodified 1089.6182 0.61824444 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 8 0 1 70.525 70.525 2 4.9355E-05 21653 TMT1-7 146.58 79.549 54.04 88.255 40.05 44.677 54.679 114.63 51 87 44 44 58 109 1 1 1 1 1 1 17510 7139 335;369 7078 11218 14574 14574 1 GLAYCETHYNQLFGDVCFHCNR Unmodified 2760.1632 0.16315907 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 57.035 57.035 4 5.3689E-46 16885 TMT1-5 159.7 152.67 185.37 176.89 254.67 193.35 303.17 264.25 175 182 254 196 307 256 2 2 2 2 2 2 59117 7140 1149 7079 11219;11220 14575;14576 14575 2 GLCAIAQAESLR Unmodified 1287.6605 0.66051996 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 6 0 1 54.643 54.643 2 2.8063E-13 15977 TMT1-5 169.65 115.46 160.99 260.36 133.57 154.62 189.28 251.5 152 257 145 152 196 241 1 1 1 1 1 1 38149 7141 861 7080 11221 14577 14577 1 GLCFCGK Unmodified 840.36223 0.36222945 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 8 0 1 48.21 48.21 2 0.023416 12930 TMT1-7 94.95 64.88 305.16 502.54 403.97 275.94 378.26 464.64 289 498 414 281 389 446 1 1 1 1 1 1 26487 7142 485 7081 11222 14578 14578 1 GLCFLFGSNLR Unmodified 1282.6492 0.64922699 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 9 0 1 72.026 72.026 3 0.0013271 20486 TMT1-8 73.499 43.732 30.884 20.968 21.406 22.105 35.357 37.367 29 22 22 22 36 36 1 1 1 1 1 1 3322.2 7143 647 7082 11223 14579 14579 1 GLCGAIHSSIAK Unmodified 1212.6285 0.62849155 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 9 0 1 43.103 43.103 3 1.5504E-05 9166 TMT1-8 97.734 66.362 123 169.81 102.23 110.09 157.13 181 116 169 109 109 161 174 1 1 1 1 1 1 14249 7144 1038 7083 11224 14580 14580 1 GLCGSCNKPIAGQVVTALGR Unmodified 2057.051 0.051013073 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 1 9 0 1 54.027 54.027 3 5.7534E-16 13379 TMT1-8 109.03 83.436 53.89 80.282 72.033 41.862 103 51.427 51 80 73 44 102 51 1 1 1 1 1 1 11792 7145 165 7084 11225 14581 14581 1 GLDCDIDIQK Unmodified 1175.5492 0.54923818 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 4 0 1 53.98 53.98 3 0.00053988 15796 TMT1-3 98.249 65.643 299.6 421.25 324.8 293.04 417.26 463.53 283 420 337 293 427 446 2 2 2 2 2 2 72074 7146 936 7085 11226 14582;14583 14582 2 GLDISNVK Unmodified 844.46543 0.46543219 82 O00571-2;O00571 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 0 6 0 1 50.201 50.201 2 0.003928 14200 TMT1-5 128.69 58.419 146.15 179.88 170.62 137.27 180.48 165.41 138 181 174 138 184 160 1 1 1 1 1 1 15669 7147 82 7086 11227 14584 14584 1 GLDIYVWR Unmodified 1020.5393 0.53926584 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 7 0 1 65.63 65.63 2 0.0059516 19676 TMT1-6 111.82 57.848 99.211 137.45 160.98 76.185 88.284 190.43 94 138 160 80 94 181 1 1 1 1 1 1 25600 7148 1666 7087 11228 14585 14585 1 GLDKLEENLPILQQPTEK Unmodified 2064.1103 0.11028532 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 1 6 0 1 68.334 68.334 4 6.4043E-06 21375 TMT1-5 84.035 66.887 99.747 131.39 75.989 49.052 114.95 120.38 94 131 80 51 116 116 1 1 1 1 1 1 9632.1 7149 231 7088 11229 14586 14586 1 GLDPYNVLAPK Unmodified 1185.6394 0.63937381 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 0 7 0 2 63.244 63.244 2;3 0.001468 18685 TMT1-6 81.865 55.746 177.5 147.1 159.36 90.646 196.25 134.05 167 152 160 95 196 131 2 2 2 2 2 2 87993 7150 633 7089 11230;11231 14587;14588 14587 2 GLDTVVALLADVVLQPR Unmodified 1778.0302 0.030184501 1639 Q10713 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 0 0 0 0 0 9 0 1 109.64 109.64 3 1.4173E-14 34033 TMT1-8 119.56 84.603 27.788 17.213 3.8973 20.324 11.19 11.407 26 18 4 19 11 11 3 3 1 2 1 2 4278.1 7151 1639 7090 11232 14589;14590;14591 14590 3 GLDVDSLVIEHIQVNK Unmodified 1777.9574 0.95741349 781 P18621-3;P18621;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 0 6 0 1 67.765 67.765 3 3.2658E-18 21220 TMT1-5 145.43 123.6 169.35 240.82 186.88 221.92 277.57 240.46 160 240 196 218 283 233 2 2 2 2 2 2 23441 7152 781 7091 11233 14592;14593 14593 2 GLDVEDVK Unmodified 873.44436 0.4443624 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 0 3 0.816 1 1 1 50.219 50.219 2;3 0.0035185 14220 TMT1-3 131.06 96.984 394.09 577.03 362.83 311.78 462.86 481.42 372 573 382 313 472 464 3 3 3 3 3 3 75752 7153 764;2321 7092 11234;11235;11236 14594;14595;14596 14596 3 GLDVNKCEIAR Unmodified 1273.6449 0.6448699 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 6 0 1 42.485 42.485 3 0.029047 11159 TMT1-5 55.578 26.62 260.65 331.07 275.17 269.81 356.97 422.61 246 332 285 268 367 406 1 1 1 1 1 1 22653 7154 2913 7093 11237 14597 14597 1 GLDVPQVSLIINYDLPNNR Unmodified 2139.1324 0.13241774 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 0 7 0 1 79.072 79.072 3 2.7987E-11 24943 TMT1-6 86.727 77.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7155 1059 7094 11238 14598 14598 1 GLDWVKEEAPDILCLQETK Unmodified 2243.1144 0.11438442 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 1 6 0 1 75.221 75.221 3 2.314E-05 24090 TMT1-5 76.704 60.405 53.922 104.12 46.363 51.647 70.87 90.72 51 102 51 51 73 87 1 1 1 1 1 1 14220 7156 914 7095 11239 14599 14599 1 GLDYLHSEK Unmodified 1060.5189 0.51892433 3054;2825 Q9P289;Q9P289-2;Q9P289-3;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 5 0 1 43.139 43.139 3 0.043704 11248 TMT1-4 46.606 18.985 129.82 207.31 186.82 151.53 184.47 182.35 123 206 191 152 189 176 1 1 1 1 1 1 48589 7157 2825;3054 7096 11240 14600 14600 1 GLEAALVYVENAHVAGK Unmodified 1739.9206 0.92063405 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 7 0 1 69.428 69.428 4 0.0011804 21183 TMT1-6 61.165 43.74 92.376 132.29 51.732 58.841 78.125 83.051 87 131 58 58 80 80 1 1 1 1 1 1 6440.1 7158 1744 7097 11241 14601 14601 1 GLEEGQAQAGQCPSLEGR Unmodified 1885.8588 0.85883843 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 2 0 1 42.895 42.895 3 2.0532E-14 12076 TMT1-1 124.18 108.23 23.215 36.153 35.042 36.455 42.78 45.683 22 36 36 36 44 44 1 1 1 1 1 1 14952 7159 3051 7098 11242 14602 14602 1 GLEEPEMDPK Unmodified 1143.5118 0.51179004 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 2 0 1 48.685 48.685 3 0.006063 14401 TMT1-1 70.1 38.166 46.628 57.746 49.158 52.185 33.424 53.412 44 58 51 51 36 51 1 1 1 1 1 1 4151.6 7160 1915 7099 11243 14603 14603 1 GLEGERPAR Unmodified 983.51484 0.514842 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 1 2.5 0.5 1 1 24.172 24.172 3 0.0044256 4921 TMT1-2 85.161 45.618 99.037 199.57 137.58 177.69 228.07 187.5 94 196 146 174 232 182 3 3 3 3 3 3 19593 7161 1137 7100 11244;11245 14604;14605;14606 14605 3 GLEISGTFTHR Unmodified 1216.62 0.62003536 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 6 0 1 44.395 44.395 3 2.2356E-05 11928 TMT1-5 89.266 76.229 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7162 1467 7101 11246 14607 14607 1 GLESATSL Unmodified 776.3916 0.39159855 301 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 0 0 3 0 1 53.687 53.687 2 4.1354E-07 16715 TMT1-2 137.44 123.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7163 301 7102 11247 14608 14608 1 GLESDVAELR Unmodified 1087.551 0.55095274 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2.5 0.5 1 1 50.186 50.186 2 0.00048569 15086 TMT1-1 115.86 45.956 453.08 629.24 502.62 424.21 434.77 600.54 428 628 519 423 454 575 2 2 2 2 2 2 67229 7164 1577 7103 11248;11249 14609;14610 14609 2 GLESTTLADKDGEIYCK Unmodified 1898.8932 0.89315825 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 1 5.5 0.5 1 1 53.184 53.184 3 9.4133E-19 15296 TMT1-4 136.01 107.2 667.16 910.45 893.16 799.95 895.76 898.66 631 912 912 796 921 867 3 3 3 3 3 3 119070 7165 830 7104 11250;11251 14611;14612;14613 14611 3 GLETEGLLR Unmodified 986.53966 0.53965977 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 4 0 1 50.838 50.838 2 6.7587E-06 14575 TMT1-3 161.12 84.347 261.5 360.58 288.55 269.76 317.3 481.31 247 360 299 268 331 460 2 2 2 2 2 2 44413 7166 2172 7105 11252 14614;14615 14614 2 GLETTATYDPETQEFILNSPTVTSIK Unmodified 2854.4124 0.41240016 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 5 0 1 74.413 74.413 4 5.8963E-08 23606 TMT1-4 71.696 58.241 61.713 73.081 25.709 21.844 35.626 29.897 58 73 29 22 36 29 1 1 1 1 1 1 7531.6 7167 1824 7106 11253 14616 14616 1 GLEVINDYHFR Unmodified 1361.6728 0.67279921 1899 Q16666-3;Q16666-2;Q16666;Q16666-6;Q6K0P9-6;Q6K0P9-5;Q6K0P9-4;Q6K0P9-3;Q6K0P9-2;Q6K0P9 IFI16;PYHIN1 Gamma-interferon-inducible protein 16;Pyrin and HIN domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 53.727 53.727 3 2.5893E-05 15457 TMT1-4 111.63 83.617 115.33 214.11 92.739 94.216 159.45 104.18 109 210 102 94 160 102 1 1 1 1 1 1 42123 7168 1899 7107 11254 14617 14617 1 GLEVTAYSPLGSSDR Unmodified 1550.7577 0.75765105 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 5 0 1 57.813 57.813 2 3.025E-43 17056 TMT1-4 182.23 139.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7169 705 7108 11255 14618 14618 1 GLEVTDDSPK Unmodified 1059.5084 0.50841922 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3 0.816 1 1 1 45.211 45.211 2;3 1.5274E-05 12229 TMT1-3 107.79 71.094 146.07 227.14 144.29 154.74 206.93 163.59 138 225 153 153 210 159 2 2 2 2 2 2 19153 7170 1184 7109 11256;11257;11258 14619;14620;14621 14621 3 GLEYLHFMR Unmodified 1164.575 0.57499942 1665;1682 Q13043;Q13043-2;Q13188;Q13188-2 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit no no 0 0 0 0 0 8 0 1 55.674 55.674 3 0.0003709 15850 TMT1-7 110.41 70.406 92.501 124 37.726 44.357 79.047 75.562 87 123 44 44 80 73 1 1 1 1 1 1 11263 7171 1665;1682 7110 11259 14622 14622 1 GLFCPHQK Unmodified 985.48037 0.48037075 502 P06127 CD5 T-cell surface glycoprotein CD5 yes yes 0 0 0 0 0 9 0 1 38.448 38.448 3 0.0083909 7563 TMT1-8 68.915 34.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7172 502 7111 11260 14623 14623 1 GLFDEEMNEILTDPSDDTK Unmodified 2167.9467 0.94670997 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 79.563 79.563 3 1.2775E-06 26755 TMT1-2 81.723 68.833 11.66 33.711 36.793 26.026 10.612 42.337 11 33 37 26 11 40 1 2 2 2 1 2 5985.2 7173 1833 7112 11261;11262 14624;14625;14626 14626 3 GLFDEYGSK Unmodified 1014.4658 0.46582612 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 0 5.5 0.5 1 1 55.182 55.182 2 5.8945E-06 16070 TMT1-4 161.92 132.34 1015.2 1615.4 1680 1093.6 1619.8 1718 963 1609 1692 1120 1653 1655 4 4 4 4 4 4 158850 7174 708 7113 11263;11264 14627;14628;14629;14630 14627 4 GLFDEYGSKK Unmodified 1142.5608 0.56078914 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 1 7 0 1 49.542 49.542 3 0.0091033 13341 TMT1-6 44.598 20.993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7175 708 7114 11265 14631 14631 1 GLFEEAAK Unmodified 863.43888 0.43888309 2165 Q8N1F7-2;Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 0 5 0 1 51.099 51.099 2 0.006376 14454 TMT1-4 106.04 26.926 122.49 221.27 144.83 153.07 235.93 296.01 116 218 153 152 242 284 1 1 1 1 1 1 9126.5 7176 2165 7115 11266 14632 14632 1 GLFEVNPWK Unmodified 1088.5655 0.56548059 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 8.5 0.5 1 1 68.773 68.773 2 0.00031562 20992 TMT1-7 141.2 100.01 160.94 240.8 158.2 162.32 166.73 227.63 152 239 167 160 174 218 2 2 2 2 2 2 39398 7177 2697 7116 11267;11268 14633;14634 14633 2 GLFIIDDK Unmodified 919.50148 0.50148335 1606;1679 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 0 0 4.67 2.62 1 1 1 65.569 65.569 2 0.0025466 19553 TMT1-6 136.16 103.93 2147.3 3928.8 2763.9 2177.8 2895 3613.2 2035 3872 2872 2193 2982 3467 5 5 5 5 5 5 469130 7178 1606;1679 7117 11269;11270;11271 14635;14636;14637;14638;14639 14638 5 GLFIIDGK Unmodified 861.496 0.49600404 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 0 8 0 1 64.935 64.935 2 0.0057468 19448 TMT1-7 114.6 56.025 1579.6 1572.7 1705 1569.4 1344.2 1735.5 1489 1605 1735 1552 1411 1664 2 2 2 2 2 2 287840 7179 989 7118 11272 14640;14641 14640 2 GLFIIDPNGVIK Unmodified 1284.7442 0.74417324 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 8.67 0.471 1 2 75.469 75.469 2;3 1.3769E-17 21746 TMT1-8 182.71 124.75 262.38 249.72 233.92 212.19 239 279.93 247 255 240 211 247 269 3 3 3 3 3 3 60501 7180 949 7119 11273;11274;11275 14642;14643;14644 14643 3 GLFPFTHVK Unmodified 1044.5757 0.57565135 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 9 0 1 55.952 55.952 3 0.00025542 14079 TMT1-8 118.26 67.386 464.28 556.42 485.19 450.9 465.19 714.8 438 560 500 447 488 683 2 2 2 2 2 2 61580 7181 1127 7120 11276 14645;14646 14645 2 GLFPGGR Unmodified 702.38131 0.38130863 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 8 0 1 43.157 43.157 2 0.0041709 10889 TMT1-7 84.185 55.319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7182 817 7121 11277 14647 14647 1 GLFTGLTPR Unmodified 960.53927 0.53926584 3052 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 0 9 0 1 57.251 57.251 2 0.0061947 14682 TMT1-8 98.629 51.863 91.925 162.33 102.13 125.72 139.92 174.03 87 160 109 123 145 167 1 1 1 1 1 1 14710 7183 3052 7122 11278 14648 14648 1 GLFYYYANEK Unmodified 1266.5921 0.59208927 2123 Q86WV1-2;Q86WV1 SKAP1 Src kinase-associated phosphoprotein 1 yes no 0 0 0 0 0 8 0 1 62.753 62.753 2 0.00038488 18653 TMT1-7 120.12 86.741 38.253 51.358 19.534 22.355 28.017 37.577 36 51 22 22 29 36 1 1 1 1 1 1 4329.3 7184 2123 7123 11279 14649 14649 1 GLGAEIAK Unmodified 757.4334 0.43340378 2837 Q9UBE0;Q9UBE0-2;Q9UBE0-3 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 0 6 0 1 45.386 45.386 2 0.011515 12330 TMT1-5 97.798 28.883 215.92 331.86 217.75 227.02 199.05 266.15 204 329 230 223 209 255 1 1 1 1 1 1 20511 7185 2837 7124 11280 14650 14650 1 GLGAGAGAGEESPATSLPR Unmodified 1696.838 0.83802663 132 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 0 0 4 0 1 46.647 46.647 3 2.6561E-17 12918 TMT1-3 117.18 102.14 37.856 89.109 54.202 67.726 62.817 60.035 36 87 58 66 65 58 1 1 1 1 1 1 20217 7186 132 7125 11281 14651 14651 1 GLGDCLVK Unmodified 860.44259 0.44258826 665;488 P05141;P12236 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 0 6 0 2 49.702 49.702 2;3 0.0088175 14007 TMT1-5 75.854 31.407 491 1132.4 736.37 713.04 609.07 986.79 467 1107 775 703 646 942 2 2 2 2 2 2 208020 7187 488;665 7126 11282;11283 14652;14653 14653 2 GLGDRPAPK Unmodified 909.50321 0.50321468 2761 Q9NVI7-2;Q9NVI7;Q5T9A4 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 0 0 0 0 1 6 0 1 31.15 31.15 3 0.027014 6665 TMT1-5 61.691 52.998 114.66 270.53 157.37 146.19 155.22 188.52 109 264 167 145 161 181 1 1 1 1 1 1 8123 7188 2761 7127 11284 14654 14654 1 GLGELQELYLK Unmodified 1261.6918 0.69180331 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 5 2.35 1 2 1 70.426 70.426 2;3 1.8918E-16 22164 TMT1-5 180.36 103.75 958.06 1182.9 1182.5 1119.4 1069 1458.7 905 1191 1209 1107 1119 1397 5 5 5 5 5 5 590790 7189 535 7128 11285;11286;11287;11288 14655;14656;14657;14658;14659 14657 5 GLGGEVPGSHQGPDPYR Unmodified 1721.8121 0.81214624 2046 Q6UW68 TMEM205 Transmembrane protein 205 yes yes 0 0 0 0 0 4 0 1 39.486 39.486 3 4.8433E-08 10118 TMT1-3 79.347 62.136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7190 2046 7129 11289 14660 14660 1 GLGGLIVVSK Unmodified 941.59097 0.59096706 2075 Q7L266-2;Q7L266 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes no 0 0 0 0 0 9 0 1 62.732 62.732 2 0.0049223 16795 TMT1-8 92.051 43.49 53.741 94.978 84.576 80.55 98.308 105.93 51 94 87 80 101 102 1 1 1 1 1 1 4769.9 7191 2075 7130 11290 14661 14661 1 GLGHTGGTLDK Unmodified 1054.5407 0.5407224 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 6 0 1 34.783 34.783 3 7.1424E-05 8114 TMT1-5 103.91 71.901 161.53 164.72 124.11 155.67 163.41 180.82 152 167 131 152 169 174 1 1 1 1 1 1 9191.8 7192 800 7131 11291 14662 14662 1 GLGLDDALEPR Unmodified 1154.5932 0.5931519 2949 Q9Y230 RUVBL2 RuvB-like 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 57.159 57.159 2 1.0001E-05 18046 TMT1-2 125.48 88.289 84.354 154.05 119.19 94.905 97.119 151.8 80 152 123 95 102 145 2 2 2 2 2 2 19581 7193 2949 7132 11292;11293 14663;14664;14665 14664 3 GLGMTLSYLFR Unmodified 1256.6587 0.65872905 53 O00217 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes yes 0 0 0 0 0 9 0 1 78.32 78.32 2 6.4941E-06 22886 TMT1-8 114.4 78.575 46.692 74.111 24.666 45.564 56.25 67.685 44 73 29 44 58 65 1 1 1 1 1 1 12190 7194 53 7133 11294 14666 14666 1 GLGPLAEAAAAGDGAAAAGAAR Unmodified 1807.9177 0.91767394 206 O43815 STRN Striatin yes yes 0 0 0 0 0 5 0 1 59.081 59.081 3 3.5406E-09 17512 TMT1-4 85.737 74.298 30.488 66.277 49.478 35.327 56.978 60.202 29 65 51 36 58 58 1 1 1 1 1 1 10000 7195 206 7134 11295 14667 14667 1 GLGPLFK Unmodified 730.43776 0.43776088 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 9 0 1 59.749 59.749 2 0.01322 15643 TMT1-8 110.24 60.2 357.53 375.15 366.38 289.41 362.3 393.68 337 381 373 291 372 379 1 1 1 1 1 1 23775 7196 3047 7135 11296 14668 14668 1 GLGSTVQEIDLTGVK Unmodified 1515.8144 0.81443765 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 6 0 2 63.935 63.935 2;3 4.0796E-34 19644 TMT1-5 196.02 127.4 146.06 210.91 160.41 154.76 154.84 157.61 138 210 167 153 160 152 2 2 2 2 2 2 43636 7197 2382 7136 11297;11298 14669;14670 14670 2 GLGTDDNTLIR Unmodified 1173.599 0.59896556 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 4 0 1 47.698 47.698 2 0.00017841 13335 TMT1-3 109.42 61.261 115.22 198.71 123.29 133.5 124.39 189.4 109 196 131 131 131 181 1 1 1 1 1 1 30446 7198 598 7137 11299 14671 14671 1 GLGTDEDAIISVLAYR Unmodified 1691.873 0.87301516 598 P09525 ANXA4 Annexin A4 yes yes 0 0 0 0 0 5 0 1 78.365 78.365 3 6.6857E-16 25071 TMT1-4 133.13 101.07 77.458 78.562 79.837 36.348 85.939 98.818 73 80 80 36 87 95 2 2 2 1 2 2 28172 7199 598 7138 11300 14672;14673 14672 2 GLGTDEDSLIEIICSR Unmodified 1776.8564 0.85637882 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 4 0 1 76.77 76.77 3 2.7716E-19 24730 TMT1-3 154.13 117.49 160.66 281.03 171.38 176.7 173.65 219.97 152 277 182 174 181 211 3 3 3 3 3 3 139430 7200 534 7139 11301 14674;14675;14676 14674 3 GLGTDEDTIIDIITHR Unmodified 1767.9003 0.90029254 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 4.5 0.5 1 1 73.815 73.815 3 4.8292E-55 23581 TMT1-3 222.16 204.25 411 624.79 365.93 443.17 440.84 581.18 388 619 393 433 460 557 5 5 5 5 5 5 250760 7201 555 7140 11302;11303 14677;14678;14679;14680;14681 14677 5 GLGTDEDTLIEILASR Unmodified 1701.8785 0.87849447 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 4.25 2.17 1 1 1 1 82.023 82.023 3 6.7259E-45 26525 TMT1-4 213.99 165.88 415.06 627.11 401.7 438.01 497.59 662.71 392 622 426 431 516 635 8 8 8 7 7 8 217470 7202 461 7141 11304;11305;11306;11307 14682;14683;14684;14685;14686;14687;14688;14689 14687 8 GLGTDEESILTLLTSR Unmodified 1703.8941 0.89414453 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 5.5 0.5 1 1 83.301 83.301 3 5.9631E-68 27251 TMT1-5 241.27 195.99 277.65 347.79 288.72 257.07 236.12 334.38 262 349 298 255 248 320 5 5 5 5 5 5 120810 7203 578 7142 11308;11309 14690;14691;14692;14693;14694 14693 5 GLGTETAEFAELK Unmodified 1364.6824 0.68236084 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 4 0 1 61.969 61.969 3 2.1489E-05 18974 TMT1-3 102.62 87.419 68.802 94.061 78.703 41.912 79.16 75.559 65 94 80 44 80 73 1 1 1 1 1 1 7386.7 7204 965 7143 11310 14695 14695 1 GLGTGTLYIAESR Unmodified 1336.6987 0.69867961 1295 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 0 0 0 6 0 1 54.303 54.303 2 0.0015715 15849 TMT1-5 84.352 54.801 38.135 58.585 33.238 45.048 56.531 60.215 36 58 36 44 58 58 1 1 1 1 1 1 8249.1 7205 1295 7144 11311 14696 14696 1 GLGVEIAK Unmodified 785.4647 0.46470391 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 6 0 1 51.001 51.001 2 0.00013755 14510 TMT1-5 154.31 77.025 798.01 1082.7 756.02 668.5 822.58 921 753 1080 790 667 846 886 1 1 1 1 1 1 121560 7206 845 7145 11312 14697 14697 1 GLHEFDSLCDPEVNDFR Unmodified 2048.8898 0.88980421 61 O00329;O00329-2 PIK3CD Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform yes no 0 0 0 0 0 3 0 1 59.605 59.605 3 0.00037282 19045 TMT1-2 54.292 43.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7207 61 7146 11313 14698 14698 1 GLHQSIEEFR Unmodified 1214.6044 0.60438529 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5.5 1.5 1 1 39.235 39.235 3 0.00010667 10026 TMT1-3 113.93 84.183 83.964 200.45 145.47 146.89 155.71 142.66 80 196 152 145 160 138 1 1 1 1 1 1 28325 7208 1833 7147 11314;11315 14699;14700 14699 2 GLIAAICAGPTALLAHEIGFGSK Unmodified 2266.2144 0.21437323 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 9 0 1 82.878 82.878 3 6.5493E-48 24741 TMT1-8 156.48 130.89 108.38 114.74 82.371 97.249 89.148 137.1 102 116 87 95 94 131 2 2 2 2 2 2 31228 7209 2468 7148 11316 14701;14702 14702 2 GLIDEVNQDFTNR Unmodified 1519.7267 0.72668527 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 3.75 1.56 1 1 1 2 2 1 61.129 61.129 2;3 1.6471E-28 18652 TMT1-3 193.28 165.95 2506.5 2814.4 2482.8 2006.9 2644.5 3400.8 2363 2843 2545 2017 2728 3261 12 12 12 12 12 12 1239600 7210 437 7149 11317;11318;11319;11320;11321;11322;11323;11324 14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713;14714;14715 14710 13 GLIDGAESYVSFSR Unmodified 1499.7256 0.72562264 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 5.5 0.5 1 1 64.692 64.692 2;3 4.045E-36 19835 TMT1-4 173.6 132.57 38.007 74.418 41.363 35.664 64.804 45.055 36 73 44 36 65 44 1 1 1 1 1 1 5951.9 7211 1658 7150 11325;11326 14716;14717 14716 2 GLIEIISNAAEYENIPIR Unmodified 2014.0735 0.073505879 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 6 0 1 86.024 86.024 3 1.2156E-19 28285 TMT1-5 138.55 123.02 39.383 27.699 29.985 13.793 43.309 60.592 37 29 30 15 44 58 1 1 1 1 1 1 6379.6 7212 293 7151 11327 14718 14718 1 GLIHPDDSVK Unmodified 1079.5611 0.56112349 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 5 0 1 40.398 40.398 3 0.00010299 10208 TMT1-4 114.5 85.769 146.08 227.17 142.19 177.54 221.63 222.87 138 225 152 174 227 215 1 1 1 1 1 1 17774 7213 1886 7152 11328 14719 14719 1 GLILHYYSER Unmodified 1249.6455 0.64552182 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 7 0 1 47.45 47.45 3 0.0053422 12525 TMT1-6 72.006 38.781 68.434 124.34 114.95 61.89 122.49 96.709 65 123 116 65 123 94 1 1 1 1 1 1 9900.8 7214 1565 7153 11329 14720 14720 1 GLIPQNYVK Unmodified 1030.5811 0.58113065 4 A1A4S6 ARHGAP10 Rho GTPase-activating protein 10 yes yes 0 0 0 0 0 8 0 1 53.989 53.989 2 0.0019377 15197 TMT1-7 109.86 88.562 53.992 49.267 81.142 49.169 92.422 106.09 51 51 80 51 94 102 1 1 1 1 1 1 6258.5 7215 4 7154 11330 14721 14721 1 GLIVYQLENQPSEFR Unmodified 1791.9155 0.91554867 1505 P78406 RAE1 mRNA export factor yes yes 0 0 0 0 0 6 0 1 66.637 66.637 2 0.0021298 20711 TMT1-5 56.205 38.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7216 1505 7155 11331 14722 14722 1 GLKDGTILCTLMNK Unmodified 1562.816 0.81603433 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 1 9 0 1 66.547 66.547 3 3.503E-05 18301 TMT1-8 90.853 64.561 130.46 174.54 107.33 158.28 77.437 183.27 123 174 116 152 87 174 1 1 1 1 1 1 13340 7217 2463 7156 11332 14723 14723 1 GLLALLFPLR Unmodified 1111.7118 0.7117509 343 O95248;O95248-5;O95248-4 SBF1 Myotubularin-related protein 5 yes no 0 0 0 0 0 9 0 1 93.042 93.042 2 0.011333 28545 TMT1-8 68.915 46.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7218 343 7157 11333 14724 14724 1 GLLASLFAFK Unmodified 1065.6223 0.62226719 90 O14523;O14523-2 C2CD2L C2 domain-containing protein 2-like yes no 0 0 0 0 0 9 0 1 86.274 86.274 2 0.014533 26037 TMT1-8 72.928 43.581 54.124 42.081 64.941 58.181 71.376 67.253 51 44 65 58 73 65 1 1 1 1 1 1 5012.5 7219 90 7158 11334 14725 14725 1 GLLDDLRNDLDR Unmodified 1413.7212 0.72120596 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 1 4 0 1 63.773 63.773 3 0.0033531 19692 TMT1-3 74.392 52.306 61.297 103.23 69.929 57.347 99.909 120.81 58 102 73 58 102 116 1 1 1 1 1 1 9741.3 7220 1609 7159 11335 14726 14726 1 GLLDVTCK Unmodified 904.4688 0.46880301 1474 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 0 0 7 0 1 54.296 54.296 3 0.0079888 15224 TMT1-6 77.058 63.063 77.207 116.72 89.675 104.17 104.83 128.13 73 116 94 102 109 123 1 1 1 1 1 1 7731 7221 1474 7160 11336 14727 14727 1 GLLEESSFATLFPK Unmodified 1537.8028 0.80281033 1727 Q13601-2;Q13601 KRR1 KRR1 small subunit processome component homolog yes no 0 0 0 0 0 8 0 1 79.251 79.251 3 0.0014038 25057 TMT1-7 68.034 37.206 38.201 43.658 34.85 28.966 34.749 45.912 36 44 36 29 36 44 1 1 1 1 1 1 5199.3 7222 1727 7161 11337 14728 14728 1 GLLEYFK Unmodified 868.46945 0.46945494 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 8 0 1 67.969 67.969 2 0.011071 20641 TMT1-7 105.39 58.825 168.69 279.99 265.05 163.29 183.13 266.6 160 278 268 167 191 255 1 1 1 1 1 1 49651 7223 2007 7162 11338 14729 14729 1 GLLGAQAK Unmodified 756.44939 0.4493882 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 1 43.604 43.604 2 8.9981E-05 11058 TMT1-7 155.19 62.429 723.46 1619.1 1108.9 1020.5 1330.6 1251.9 688 1585 1160 1017 1358 1210 2 2 2 2 2 2 108180 7224 1067 7163 11339 14730;14731 14730 2 GLLGCNIIPLQR Unmodified 1352.7598 0.75984008 56 O00233;O00233-3 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 0 9 0 1 65.615 65.615 2 8.3173E-12 17944 TMT1-8 143.45 110.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7225 56 7164 11340 14732 14732 1 GLLGDAPNDPR Unmodified 1123.5622 0.56218613 999 P33240-2;P33240;Q9H0L4 CSTF2;CSTF2T Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant yes no 0 0 0 0 0 4 0 1 44.552 44.552 2 0.01057 12145 TMT1-3 78.113 29.511 108.01 145 119.28 102.42 103.85 159.07 102 145 123 102 109 152 1 1 1 1 1 1 9421.2 7226 999 7165 11341 14733 14733 1 GLLGLPGALYAHDALR Unmodified 1635.9097 0.90967544 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 8.5 0.5 1 1 65.989 65.989 3 1.1306E-11 18055 TMT1-8 115.09 87.122 114.91 197.84 176.92 145.3 140.34 135.64 109 196 181 145 145 131 2 2 2 2 2 2 49707 7227 772 7166 11342;11343 14734;14735 14735 2 GLLGNPICSPEYWKPSTFGGEVGFNIVK Unmodified 3065.5321 0.53207856 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 1 9 0 1 79.667 79.667 4 6.3634E-13 23432 TMT1-8 78.202 52.989 84.887 77.822 94.136 79.842 105.65 136.63 80 80 95 80 109 131 2 2 2 2 2 2 23458 7228 855 7167 11344 14736;14737 14736 2 GLLHSFDLLK Unmodified 1141.6495 0.64954457 2573 Q9BY44-4;Q9BY44-3;Q9BY44 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 0 9 0 1 64.867 64.867 3 0.00084822 17584 TMT1-8 90.15 45.587 100.07 84.787 61.797 66.032 70.722 75.8 94 87 65 65 73 73 1 1 1 1 1 1 13934 7229 2573 7168 11345 14738 14738 1 GLLLFVDEADAFLR Unmodified 1577.8453 0.84534384 2761 Q9NVI7-2;Q9NVI7;Q9NVI7-3;Q5T2N8 ATAD3A;ATAD3C ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C yes no 0 0 0 0 0 7 0 1 96.803 96.803 2 7.6052E-07 31468 TMT1-6 110.46 60.334 23.452 14.146 13.899 30.62 13.235 30.536 22 15 15 29 15 29 1 1 1 1 1 1 4001.3 7230 2761 7169 11346 14739 14739 1 GLLLYGPPGTGK Unmodified 1171.6601 0.66010926 2153 Q8IYT4-2;Q8IYT4 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 yes no 0 0 0 0 0 9 0 1 60.693 60.693 2 1.8683E-11 15968 TMT1-8 157.24 0 207.73 252.59 218.8 189.74 201.95 261.8 196 254 225 189 210 251 1 1 1 1 1 1 74314 7231 2153 7170 11347 14740 14740 1 GLLNDAFQK Unmodified 1004.5291 0.52909508 1008 P34913 EPHX2 Bifunctional epoxide hydrolase 2;Cytosolic epoxide hydrolase 2;Lipid-phosphate phosphatase yes yes 0 0 0 0 0 7 0 1 58.487 58.487 2 0.015651 16857 TMT1-6 81.163 50.978 130.37 152.72 140.18 154.58 170.02 142.26 123 154 145 152 174 138 1 1 1 1 1 1 11791 7232 1008 7171 11348 14741 14741 1 GLLPEELTPLILATQK Unmodified 1735.0131 0.013137454 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 85.608 85.608 3 1.0545E-23 27504 TMT1-7 173.44 135.25 262.14 322.45 212.27 260.26 250.63 333.97 247 323 226 254 262 320 3 3 3 3 3 3 62944 7233 693 7172 11349;11350 14742;14743;14744 14744 3 GLLPEHFLFLAQK Unmodified 1511.85 0.85003529 1092 P42226;P42226-3;P42226-2 STAT6 Signal transducer and activator of transcription 6 yes no 0 0 0 0 0 9 0 1 71.049 71.049 3 3.4466E-10 20086 TMT1-8 121.02 89.59 61.283 118.3 59.585 74.945 68.736 121.69 58 116 65 73 73 116 1 1 1 1 1 1 9251.4 7234 1092 7173 11351 14745 14745 1 GLLPGCVYHVQLK Unmodified 1482.8017 0.80170489 1498 Q5JPE7-2;Q15155;P69849;Q5JPE7;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 0 9 0 1 58.04 58.04 3 2.4964E-08 14950 TMT1-8 106.62 71.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7235 1498 7174 11352 14746 14746 1 GLLPGLLPAPADK Unmodified 1260.7442 0.74417324 2027 Q6P2E9-2;Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 0 8 0 1 70.67 70.67 3 0.00020053 21753 TMT1-7 88.187 48.921 46.511 73.609 55.469 59.185 48.002 76.448 44 73 58 58 51 73 1 1 1 1 1 1 6378.9 7236 2027 7175 11353 14747 14747 1 GLLPLVTILGLPNLPIDFPTSAACQAVAGVCK Unmodified 3304.7927 0.79272669 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 1 106.1 106.1 4 2.3053E-06 33157 TMT1-8 52.391 46.164 15.899 22.099 14.163 14.84 37.801 6.3833 15 22 15 15 37 7 1 1 1 1 1 1 2106.3 7237 2100 7176 11354 14748 14748 1 GLLQLQWK Unmodified 984.57565 0.57565135 326 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 0 9 0 1 67.383 67.383 3 0.0016251 18623 TMT1-8 88.942 65.514 99.685 107.47 106.77 94.694 89.559 128.56 94 109 109 94 94 123 1 1 1 1 1 1 10845 7238 326 7177 11355 14749 14749 1 GLLSAEVAR Unmodified 914.51853 0.5185304 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5.5 0.5 1 1 46.086 46.086 2 2.2223E-05 12558 TMT1-5 126.62 40.526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7239 1833 7178 11356;11357 14750;14751 14751 2 GLLSSLDHTSIR Unmodified 1297.699 0.69901396 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 0 8 1 1 1 50.787 50.787 3 2.003E-07 12035 TMT1-8 114.24 53.557 306.97 449.46 325.75 329.84 433.57 426.82 290 447 341 327 443 412 3 3 3 3 3 3 41641 7240 569 7179 11358;11359 14752;14753;14754 14754 3 GLLSVVR Unmodified 742.47012 0.47012364 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 50.816 50.816 2 0.0061804 12111 TMT1-8 100.67 50.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7241 2061 7180 11360 14755 14755 1 GLLTIPMDNTEVAQWLR Unmodified 1956.0139 0.01388251 2297 Q92538-3;Q92538-2;Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 8 0 1 84.924 84.924 3 0.0028091 27216 TMT1-7 54.237 30.406 15.763 53.019 10.873 47.062 20.321 15.41 15 51 15 44 22 15 1 1 1 1 1 1 3912.7 7242 2297 7181 11361 14756 14756 1 GLLTLFATT Unmodified 935.53278 0.53278348 236 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 0 0 9 0 1 89.771 89.771 2 0.0013637 27393 TMT1-8 124.89 92.953 45.628 50.467 43.095 28.183 50.27 51.866 43 51 44 29 51 50 2 2 2 2 2 2 14698 7243 236 7182 11362 14757;14758 14758 2 GLLTPIIK Unmodified 853.56369 0.56368968 62 O00330;O00330-3;O00330-2 PDHX Pyruvate dehydrogenase protein X component, mitochondrial yes no 0 0 0 0 0 9 0 1 63.321 63.321 2 0.0067753 17025 TMT1-8 98.997 39.791 115.82 106.48 100.91 55.661 91.354 128.51 109 109 102 58 94 123 1 1 1 1 1 1 6622.7 7244 62 7183 11363 14759 14759 1 GLLTYTSWEDALSR Unmodified 1610.794 0.79403656 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 7 0 1 74.54 74.54 3 2.7015E-07 23157 TMT1-6 105.03 84.188 23.173 44.671 34.853 29.232 20.628 30.325 22 44 36 29 22 29 1 1 1 1 1 1 15150 7245 929 7184 11364 14760 14760 1 GLMATPAK Unmodified 787.42621 0.42620992 489 P05164-2;P05164;P05164-3;P11678 MPO;EPX Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain;Eosinophil peroxidase;Eosinophil peroxidase light chain;Eosinophil peroxidase heavy chain yes no 0 0 0 0 0 8 0 1 43.713 43.713 2 0.00098332 11111 TMT1-7 98.997 41.819 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7246 489 7185 11365 14761 14761 1 GLMTLQALYGTIPQIFGK Unmodified 1950.0649 0.064855448 2365 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 0 9 0 1 94.497 94.497 3 2.6741E-09 29106 TMT1-8 94.544 76.442 30.788 20.702 37.689 21.273 28.03 38.642 29 22 37 22 29 37 1 1 1 1 1 1 3042.2 7247 2365 7186 11366 14762 14762 1 GLPAAVSAADLQFALQSLEGMGR Unmodified 2301.1787 0.17871601 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 8 0 1 93.89 93.89 3 1.0385E-17 30519 TMT1-7 109.37 105.25 15.927 5.9877 23.11 5.7029 30.342 22.586 15 7 22 7 30 22 1 1 1 1 1 1 2563.8 7248 2121 7187 11367 14763 14763 1 GLPAPGPSPADK Unmodified 1105.5768 0.57677356 1103 P42768 WAS Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 0 6 0 1 44.934 44.934 3 0.00071642 12114 TMT1-5 80.014 55.161 207.82 258.23 199.53 128.8 132.45 174.24 196 259 205 131 138 167 1 1 1 1 1 1 17391 7249 1103 7188 11368 14764 14764 1 GLPAPIEK Unmodified 823.48035 0.48035398 421 P01859 IGHG2 Ig gamma-2 chain C region yes yes 0 0 0 0 0 6 0 1 49.3 49.3 2 0.0060952 13841 TMT1-5 109.86 83.26 251.05 360.13 421.38 301.54 473.17 499.24 238 361 423 307 482 481 1 1 1 1 1 1 47179 7250 421 7189 11369 14765 14765 1 GLPDNISSVLNK Unmodified 1255.6772 0.67721588 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 7 0 2 64.705 64.705 2;3 4.4555E-10 19303 TMT1-6 157.68 102.31 468.03 616.14 525.87 428.46 483.32 673.78 442 617 540 429 503 645 3 3 3 3 3 3 120710 7251 1910 7190 11370;11371 14766;14767;14768 14768 3 GLPEGFAHPK Unmodified 1051.5451 0.5450795 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 42.944 42.944 3 0.0030317 10893 TMT1-6 54.608 24.044 200.39 198.53 236.13 165.6 209.82 247.72 189 203 237 168 216 238 1 1 1 1 1 1 33320 7252 3063 7191 11372;11373 14769;14770 14770 2 GLPFEAENK Unmodified 1003.4975 0.4974606 2747 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 0 5 0 1 52.091 52.091 2 0.0055705 14847 TMT1-4 96.948 42.98 92.049 115.19 121.17 101.87 127.42 143.47 87 116 123 102 131 138 1 1 1 1 1 1 9255.1 7253 2747 7192 11374 14771 14771 1 GLPFGCSK Unmodified 864.41637 0.41637351 983;1325;982 P31943;P55795;P31942-2;P31942 HNRNPH1;HNRNPH2;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3 no no 0 0 0 0 0 8.5 0.5 1 1 50.426 50.426 2 0.0069146 11949 TMT1-8 121.99 61.838 550.02 858.23 607 530.79 771.19 835.06 520 851 633 532 788 804 3 3 3 3 3 3 79423 7254 983;1325;982 7193 11375;11376 14772;14773;14774 14774 3 GLPFGCTK Unmodified 878.43202 0.43202358 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 8.5 0.5 1 1 51.066 51.066 2 0.0061982 14073 TMT1-7 108.46 41.779 306.46 483.68 381.11 279.99 409.91 481.86 290 480 392 284 420 463 3 3 3 3 3 3 35305 7255 1271 7194 11377;11378 14775;14776;14777 14776 3 GLPSELSPAIEEEESK Unmodified 1713.8309 0.83087557 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7;Q9Y6F6-6 MRVI1 Protein MRVI1 yes no 0 0 0 0 0 3 0 1 60.633 60.633 3 1.0374E-05 19455 TMT1-2 88.768 72.274 30.731 44.288 27.263 29.251 43.661 29.668 29 44 29 29 44 29 1 1 1 1 1 1 3921.2 7256 3056 7195 11379 14778 14778 1 GLPWSCSADEVQR Unmodified 1503.6776 0.67762659 983 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 0 5 0 1 52.816 52.816 2 2.729E-23 15088 TMT1-4 192.44 172.01 53.853 118.28 90.778 104.24 97.459 129.4 51 116 95 102 102 124 1 2 2 2 2 2 21240 7257 983 7196 11380 14779;14780 14779 2 GLQATQLAR Unmodified 956.54033 0.54032847 2226 Q8NFU3-3;Q8NFU3;Q8NFU3-2;Q8NFU3-4 TSTD1 Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 38.817 38.817 2 0.034911 9707 TMT1-5 72.042 23.538 169.02 289.52 202.34 197.96 223.61 229.21 160 286 212 196 230 221 1 1 1 1 1 1 14319 7258 2226 7197 11381 14781 14781 1 GLQEHQR Unmodified 866.43586 0.4358634 1062 P39210 MPV17 Protein Mpv17 yes yes 0 0 0 0 0 3 0 1 17.564 17.564 3 0.0070827 3142 TMT1-2 87.754 16.842 4.2669 0 4.2236 1.8606 3.9193 5.2182 4 0 4 2 4 5 1 0 1 1 1 1 299.41 7259 1062 7198 11382 14782 14782 1 GLQLLSK Unmodified 757.46979 0.46978929 2399 Q96F07-2;Q96F07 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 0 9 0 1 55.451 55.451 2 0.043034 13929 TMT1-8 83.265 18.227 77.032 163.72 79.261 104.65 112.39 120.45 73 160 87 102 116 116 1 1 1 1 1 1 10100 7260 2399 7199 11383 14783 14783 1 GLQQENHLK Unmodified 1065.5567 0.55670682 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 5.5 0.5 1 1 32.684 32.684 3 0.00021938 7123 TMT1-4 123.86 102.91 534.29 620.57 566.25 504.26 625.81 656.92 504 626 581 503 642 633 2 2 2 2 2 2 39581 7261 2263 7200 11384;11385 14784;14785 14784 2 GLQQQNSDWYLK Unmodified 1478.7154 0.7153923 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7 0 1 56.623 56.623 3 1.9625E-08 16145 TMT1-6 128.67 106.48 122.12 197.58 227.16 134.38 155.23 173.59 116 197 227 138 160 167 1 1 1 1 1 1 20100 7262 1139 7201 11386 14786 14786 1 GLQSGVDIGVK Unmodified 1071.5924 0.59242362 2463 Q99439 CNN2 Calponin-2 yes yes 0 0 0 0 0 6 0 1 51.737 51.737 2 1.6302E-06 14883 TMT1-5 137.89 71.625 787.55 944.93 827.09 595.63 752.76 1041.3 743 951 845 603 780 997 2 2 2 2 2 2 182000 7263 2463 7202 11387 14787;14788 14788 2 GLQTSQDAR Unmodified 974.47812 0.47812214 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 26.582 26.582 2 1.91E-13 5907 TMT1-2 182.4 149.59 622.98 828.57 813.9 532.81 705.52 703.68 589 831 823 544 721 679 7 7 7 7 7 7 176710 7264 918 7203 11388;11389;11390;11391 14789;14790;14791;14792;14793;14794;14795 14792 7 GLQVALEEFHK Unmodified 1269.6717 0.67173657 2502 Q99969 RARRES2 Retinoic acid receptor responder protein 2 yes yes 0 0 0 0 0 6 0 1 59.291 59.291 3 0.00028161 17782 TMT1-5 98.105 64.696 153.75 208.75 131.52 100.98 141.61 157.99 145 208 138 102 145 152 1 1 1 1 1 1 24394 7265 2502 7204 11392 14796 14796 1 GLQVLLTPVLANILEADQEK Unmodified 2163.2151 0.21508474 2863 Q9UHD2 TBK1 Serine/threonine-protein kinase TBK1 yes yes 0 0 0 0 0 8 0 1 97.096 97.096 4 0.00026714 31696 TMT1-7 59.512 56.273 7.2146 22.406 30.833 5.5379 14.645 23.034 7 22 30 7 15 22 1 1 1 1 1 1 2044.3 7266 2863 7205 11393 14797 14797 1 GLQWIIDTTIAYPK Unmodified 1617.8766 0.87664397 2304 Q92604 LPGAT1 Acyl-CoA:lysophosphatidylglycerol acyltransferase 1 yes yes 0 0 0 0 0 9 0 1 83.841 83.841 3 3.9196E-07 25041 TMT1-8 105.03 79.37 30.619 59.085 33.625 36.529 43.327 29.678 29 58 36 36 44 29 1 1 1 1 1 1 3883.3 7267 2304 7206 11394 14798 14798 1 GLQYAAQEGLLALQSELLR Unmodified 2072.1266 0.12660408 777 P18428 LBP Lipopolysaccharide-binding protein yes yes 0 0 0 0 0 7 0 1 90.11 90.11 3 1.2265E-19 29132 TMT1-6 110.44 94.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7268 777 7207 11395 14799 14799 1 GLRPLDVAFLR Unmodified 1255.7401 0.74009091 2288 Q8WYJ6 SEPT1 Septin-1 yes yes 0 0 0 0 1 9 0 1 59.954 59.954 3 0.0069223 15687 TMT1-8 62.705 23.557 68.659 124.96 76.539 48.872 122.8 105.23 65 123 80 51 123 102 1 1 1 1 1 1 14798 7269 2288 7208 11396 14800 14800 1 GLRPSCPNSQSPVK Unmodified 1525.7671 0.7671103 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 8 0 1 34.538 34.538 3 1.515E-10 7509 TMT1-7 126.56 110.44 92.049 115.19 121.14 102.57 90.26 97.628 87 116 123 102 94 94 1 1 1 1 1 1 13781 7270 471 7209 11397 14801 14801 1 GLSEDTTEETLK Unmodified 1321.6249 0.62490554 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 2 0 1 48.147 48.147 3 8.5509E-09 14145 TMT1-1 131.43 87.62 61.224 110.58 75.999 81.214 90.179 128.54 58 109 80 80 94 123 1 1 1 1 1 1 21457 7271 786 7210 11398 14802 14802 1 GLSEDTTEETLKESFDGSVR Unmodified 2199.0179 0.017901073 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 3.25 0.829 1 1 2 60.709 60.709 3;4 1.288E-35 19463 TMT1-2 161.1 140.01 700.79 1059.4 885.01 778.54 1013.8 1267.3 663 1054 912 778 1045 1216 5 5 5 5 5 5 140180 7272 786 7211 11399;11400;11401;11402 14803;14804;14805;14806;14807 14804 5 GLSFHPK Unmodified 784.42317 0.42317345 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 8 0 1 39.214 39.214 3 0.010693 9274 TMT1-7 79.454 21.99 145.82 240.46 175.65 112.84 185 218.58 138 238 181 116 189 210 1 1 1 1 1 1 20068 7273 1287 7212 11403 14808 14808 1 GLSFLFPLLK Unmodified 1133.6849 0.68486744 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 9 0 1 90.052 90.052 2 0.0010091 27438 TMT1-8 107.15 74.033 62.339 125.73 56.1 89.743 106.55 97.163 59 123 58 87 109 94 2 2 1 2 2 2 8819.5 7274 1501 7213 11404 14809;14810 14809 2 GLSFSEATASNLVK Unmodified 1422.7355 0.73545904 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 7 0 1 61.422 61.422 3 1.4941E-18 18037 TMT1-6 144.92 122.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7275 2854 7214 11405 14811 14811 1 GLSIEQLTTLAEK Unmodified 1401.7715 0.7715102 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 7 0 1 72.682 72.682 3 4.9043E-05 22433 TMT1-6 98.942 67.511 30.434 58.571 65.161 33.707 93.426 97.538 29 58 65 36 94 94 1 1 1 1 1 1 8289.5 7276 1073 7215 11406 14812 14812 1 GLSMAATFIGNNTAIQEIFNR Oxidation (M) 2283.1318 0.13176581 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 8.33 0.471 2 1 79.014 79.014 3;4 1.0707E-31 23068 TMT1-8 139.11 121.96 132.33 173.64 153.74 186.16 191.57 203.47 125 174 160 182 198 196 5 5 5 5 5 5 37469 7277 2650 7216 11407;11408;11409 14813;14814;14815;14816;14817 14816 307 5 GLSMAATFIGNNTAIQEIFNR Unmodified 2267.1369 0.13685119 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 9 0 3 85.77 85.77 3;4 4.8285E-52 25816 TMT1-8 175.91 143.61 130.17 173.73 157.25 107.55 176.03 243.35 123 174 160 110 181 233 3 3 3 3 3 3 355940 7278 2650 7216 11410;11411;11412 14818;14819;14820;14821 14820 4 GLSNLFLSCPIPK Unmodified 1444.7748 0.77482144 3025 Q9Y570-3;Q9Y570-2;Q9Y570;Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 0 9 0 1 72.463 72.463 3 0.0009454 20649 TMT1-8 68.277 33.899 46.533 57.48 65.45 26.855 50.038 60.4 44 58 65 29 51 58 1 1 1 1 1 1 7253.7 7279 3025 7217 11413 14822 14822 1 GLSPAYLR Unmodified 875.4865 0.48650199 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 7 0 1 45.823 45.823 2 0.0035751 11879 TMT1-6 130.77 110.21 266.46 319.15 391.86 264.75 314.46 418.49 252 323 392 269 326 401 1 1 1 1 1 1 38335 7280 2951 7218 11414 14823 14823 1 GLSQEGTGPPTSAGEGHSR Unmodified 1823.8398 0.83981755 1999 Q63HN8;Q63HN8-4;Q63HN8-5 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 3 0 1 29.906 29.906 3 1.3376E-14 7330 TMT1-2 116.6 96.712 15.974 6.1184 15.104 15.228 14.199 23.047 15 7 15 15 15 22 1 1 1 1 1 1 3280.3 7281 1999 7219 11415 14824 14824 1 GLSQSALPYR Unmodified 1090.5771 0.57710791 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 6.5 0.5 1 1 44.956 44.956 2 0.00058933 11611 TMT1-6 112.75 75.19 185.6 255.24 149.66 161.97 212.3 241.25 175 254 160 160 218 232 2 2 2 2 2 2 36420 7282 1427 7220 11416;11417 14825;14826 14826 2 GLSSILDAAR Unmodified 1001.5506 0.55055881 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 7 0 1 59.454 59.454 2 7.9619E-05 17260 TMT1-6 100.02 47.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7283 2325 7221 11418 14827 14827 1 GLSSLLYGSIPK Unmodified 1233.6969 0.69688869 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 70.749 70.749 3 0.00048875 19943 TMT1-8 80.245 48.29 177.05 217.07 176.17 153.58 167.43 219.08 167 218 182 153 174 210 2 2 2 2 2 2 17313 7284 1280 7222 11419 14828;14829 14828 2 GLTAVSNNAGVDNFGLGLLLR Unmodified 2100.1328 0.13275209 1326 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 0 9 0 1 82 82 3 1.7174E-19 24315 TMT1-8 116.98 97.372 46.671 57.864 41.91 44.684 48.412 83.899 44 58 44 44 51 80 1 1 1 1 1 1 21949 7285 1326 7223 11420 14830 14830 1 GLTDSIHR Unmodified 897.46683 0.46682918 790 P19397 CD53 Leukocyte surface antigen CD53 yes yes 0 0 0 0 0 6 2 1 1 31.644 31.644 3 0.00030013 6421 TMT1-7 141.39 88.673 146.27 165.09 163.54 146.12 139.24 166.59 138 167 167 145 145 160 2 2 2 2 2 2 9633.8 7286 790 7224 11421;11422 14831;14832 14832 2 GLTEFVEPIIQIK Unmodified 1485.8443 0.84428121 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 5.5 2.69 1 1 1 1 79.364 79.364 3 1.5866E-16 24959 TMT1-6 168.02 130.46 992.46 1649.8 1497.8 1034.3 1486.3 1815.6 941 1637 1523 1051 1526 1743 7 7 7 6 7 7 302610 7287 1684 7225 11423;11424;11425;11426 14833;14834;14835;14836;14837;14838;14839 14835 7 GLTEPQIQVVCR Unmodified 1398.7289 0.72893388 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 51.296 51.296 2 7.6281E-09 14541 TMT1-4 149.94 106.32 108.66 91.79 53.744 66.369 78.328 67.055 102 94 58 65 80 65 1 1 1 1 1 1 10001 7288 325 7226 11427 14840 14840 1 GLTEQEVETILDK Unmodified 1473.7563 0.75625407 1730 Q13618;Q13618-2;Q13618-3 CUL3 Cullin-3 yes no 0 0 0 0 0 4 0 1 72.205 72.205 3 7.1821E-11 22972 TMT1-3 131.79 96.057 54.095 57.109 57.133 43.179 80.164 44.616 51 58 58 44 80 44 1 1 1 1 1 1 11463 7289 1730 7227 11428 14841 14841 1 GLTFQEVENFFTFLK Unmodified 1818.9192 0.91923707 2506 Q9BPX6-5;Q9BPX6-4;Q9BPX6-2;Q9BPX6;Q9BPX6-3 MICU1 Calcium uptake protein 1, mitochondrial yes no 0 0 0 0 0 9 0 1 99.001 99.001 3 7.5615E-06 30634 TMT1-8 89.541 63.675 38.178 27.405 52.443 20.249 35.699 29.895 36 29 51 22 36 29 1 1 1 1 1 1 4228.3 7290 2506 7228 11429 14842 14842 1 GLTLIELWEGLTVDDVQK Unmodified 2028.0779 0.077922555 1326 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 0 7 0 1 97.143 97.143 4 0.016201 31578 TMT1-6 40.52 29.046 23.448 14.135 14.597 14.977 29.125 15.159 22 15 15 15 29 15 1 1 1 1 1 1 2488.1 7291 1326 7229 11430 14843 14843 1 GLTLLFASGDSGAGCWSVSGR Unmodified 2096.9949 0.99493798 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 9 0 1 76.918 76.918 3 2.5897E-19 22336 TMT1-8 114.1 98.547 46.509 88.713 42.975 52.122 56.315 57.023 44 87 47 51 58 55 2 2 2 2 2 2 27690 7292 105 7230 11431 14844;14845 14844 2 GLTPLELALQR Unmodified 1209.7081 0.70812208 1320 P55273 CDKN2D Cyclin-dependent kinase 4 inhibitor D yes yes 0 0 0 0 0 7 0 1 66.661 66.661 2 0.0052226 20101 TMT1-6 59.067 15.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7293 1320 7231 11432 14846 14846 1 GLTPTGMLPSGVLSGGK Unmodified 1570.8389 0.83887826 1618 Q08209-3;Q08209-2;Q08209;Q08209-5;Q08209-4 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform yes no 0 0 0 0 0 9 0 1 67.295 67.295 3 3.6676E-11 18591 TMT1-8 108.34 83.402 61.039 110.06 107.49 79.326 90.779 113.6 58 109 109 80 94 109 1 1 1 1 1 1 13655 7294 1618 7232 11433 14847 14847 1 GLTSVINQK Unmodified 958.54475 0.54474515 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 6 2.92 1 1 2 49.783 49.783 2;3 1.5137E-13 13428 TMT1-7 184.49 108.76 3210.9 4163.2 3611.1 3103 3494.6 4074.7 3032 4173 3711 3096 3611 3916 5 5 5 5 5 5 620300 7295 527 7233 11434;11435;11436;11437 14848;14849;14850;14851;14852;14853 14851 6 GLTVPIASIDIPSGWDVEK Unmodified 1996.0517 0.051707805 2209 Q8NCW5-2;Q8NCW5 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 0 7 0 1 81.873 81.873 2 1.8205E-10 26042 TMT1-6 83.729 61.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7296 2209 7234 11438 14854 14854 1 GLTVVVAFR Unmodified 960.57565 0.57565135 702 P14324-2;P14324 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 0 9 0 1 60.886 60.886 2 0.021304 16059 TMT1-8 72.23 22.103 130.16 236.3 105.79 109.77 162.88 196.83 123 232 116 109 167 189 1 1 1 1 1 1 18784 7297 702 7235 11439 14855 14855 1 GLVAEGHR Unmodified 837.4457 0.4456998 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.83 1.57 1 1 2 1 1 24.532 24.532 2;3 0.00039498 4339 TMT1-3 138.83 84.621 283.37 284.16 283.14 232.87 261.56 319.8 267 289 288 233 269 307 9 8 8 9 7 8 112150 7298 776 7236 11440;11441;11442;11443;11444;11445 14856;14857;14858;14859;14860;14861;14862;14863;14864 14859 9 GLVAVITGGASGLGLATAER Unmodified 1812.0105 0.010511692 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 9 0 2 76.149 76.149 2;3 1.9504E-19 22155 TMT1-8 119.38 90.797 76.528 70.399 62.744 66.808 84.538 98.858 72 72 65 66 87 95 2 2 2 2 2 2 80775 7299 2485 7237 11446;11447 14865;14866 14866 2 GLVEDTLR Unmodified 901.4869 0.48689592 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3.5 0.5 1 1 45.683 45.683 2 0.00045147 12470 TMT1-3 151.29 75.158 245.17 406.38 288.02 197.55 381.01 367.56 232 402 298 203 385 355 2 2 2 2 2 2 40119 7300 1833 7238 11448;11449 14867;14868 14868 2 GLVEIQGPR Unmodified 967.54508 0.5450795 3100 yes no 0 0 0 0 0 6 0 1 33.72 33.72 3 0.001858 7690 TMT1-5 60.892 11.795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7301 3100 7239 11450 14869 14869 1 GLVEPVDVVDNADGTQTVNYVPSR Unmodified 2543.2504 0.25036063 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3 1.32 2 3 2 1 65.541 65.541 3;4 1.9104E-56 20496 TMT1-3 185.71 165.22 606.26 843.94 725.54 675.79 706 833.72 573 843 748 670 732 801 13 13 13 13 13 13 1212700 7302 831 7240 11451;11452;11453;11454;11455;11456;11457;11458 14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883 14879 14 GLVEYFK Unmodified 854.4538 0.45380487 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 7 0 1 60.155 60.155 2 0.026016 17500 TMT1-6 92.925 35.821 77.296 116.97 74.453 105.5 82.503 106.38 73 116 80 102 87 102 1 1 1 1 1 1 5817.9 7303 2284 7241 11459 14884 14884 1 GLVFDTLYGNLLK Unmodified 1451.8024 0.8024164 1207 P49902-2;P49902 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 0 0 0 0 9 0 1 82.549 82.549 2 6.3119E-11 24585 TMT1-8 127.42 91.913 30.648 51.611 35.088 13.765 28.668 30.096 29 51 36 15 29 29 1 1 1 1 1 1 3648.8 7304 1207 7242 11460 14885 14885 1 GLVGEIIK Unmodified 827.51165 0.5116541 846;724 P22392-2;P22392;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 0 7 0 1 58.356 58.356 2 0.025161 16770 TMT1-6 85.265 24.583 265.3 465.96 461.98 290.33 475.56 444.81 252 462 466 299 482 430 1 1 1 1 1 1 71889 7305 846;724 7243 11461 14886 14886 1 GLVGEIIKR Unmodified 983.61277 0.61276513 846;724 P22392-2;P22392;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 1 8 0 1 49.042 49.042 3 0.00015501 13256 TMT1-7 136.21 66.819 1173.6 1757.8 1435 1113.5 1392 1959 1110 1749 1475 1121 1444 1875 2 2 2 2 2 2 105010 7306 846;724 7244 11462 14887;14888 14888 2 GLVGPELHDR Unmodified 1091.5724 0.57235688 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 37.079 37.079 3 0.0061087 9137 TMT1-3 69.979 60.068 85.048 62.079 80.525 42.237 56.11 76.217 80 65 80 44 58 73 1 1 1 1 1 1 15263 7307 1833 7245 11463 14889 14889 1 GLVLDHGAR Unmodified 936.51411 0.51411372 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 6 0 1 33.284 33.284 3 0.0021679 7482 TMT1-5 87.308 51.122 61.193 118.05 74.854 96.864 75.314 114.04 58 116 80 94 80 109 1 1 1 1 1 1 10060 7308 1068 7246 11464 14890 14890 1 GLVLGIYSK Unmodified 948.56442 0.56441796 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 9 0 1 62.462 62.462 2 0.00019391 16667 TMT1-8 143.01 89.844 208.69 347.36 337.86 279.58 220.13 343.37 198 345 344 278 234 328 1 1 1 1 1 1 39224 7309 932 7247 11465 14891 14891 1 GLVLGPIHK Unmodified 932.58074 0.58073672 558 P08195-2;P08195-3;P08195;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 0 9 0 1 50.372 50.372 3 0.0011271 11956 TMT1-8 96.253 50.941 68.247 155.12 120.3 70.333 121.56 112.73 65 152 123 73 123 109 1 1 1 1 1 1 6531.3 7310 558 7248 11466 14892 14892 1 GLVLIAFSQYLQQCPFDEHVK Unmodified 2491.257 0.25696633 29 CON__P02769 yes yes 0 0 0 0 0 9 0 2 88.92 88.92 3;4 0.0021896 25152 TMT1-8 46.027 26.207 91.924 108.37 147.91 69.533 76.57 114.01 87 110 146 73 80 109 3 3 3 3 3 3 9783.4 + 7311 29 7249 11467;11468 14893;14894;14895 14893 3 GLVLLPK Unmodified 738.50036 0.50036114 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 9 0 1 60.366 60.366 2 0.009653 15883 TMT1-8 123.34 56.281 199.34 336.99 295.49 250 241.66 365.14 189 334 303 249 254 349 1 1 1 1 1 1 20959 7312 1342 7250 11469 14896 14896 1 GLVLMSR Unmodified 774.44219 0.44219433 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 9 0 1 48.662 48.662 2 0.014162 11230 TMT1-8 104.76 48.669 264.1 314.23 250.16 222.14 413.73 326.12 249 316 259 224 416 317 1 1 1 1 1 1 23394 7313 920 7251 11470 14897 14897 1 GLVMVKPGSIKPHQK Unmodified 1617.9389 0.93886707 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 2 9 0 1 43.197 43.197 5 2.5815E-05 9225 TMT1-8 79.875 53.343 99.003 207.03 137.04 155.67 122.16 224.64 94 203 145 152 131 214 1 1 1 1 1 1 8546 7314 1180 7252 11471 14898 14898 1 GLVPEDKTLREIK Phospho (STY) 1576.8226 0.82257329 93 O14562 UBFD1 Ubiquitin domain-containing protein UBFD1 yes yes 0 0 0 1 2 9 0 1 48.647 48.647 3 0.033545 11246 TMT1-8 41.092 7.4065 92.625 61.748 69.755 113.57 74.802 106.6 87 65 73 109 80 102 1 1 1 1 1 1 10916 7315 93 7253 11472 14899 14899 14 1 GLVQALGLSNFNSR Unmodified 1474.7892 0.78922595 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 9 0 1 67.396 67.396 3 6.6388E-05 18629 TMT1-8 79.771 49.44 53.92 95.475 54.121 59.142 54.563 98.647 51 94 58 58 58 94 1 1 1 1 1 1 16222 7316 705 7254 11473 14900 14900 1 GLVSSDELAK Unmodified 1017.5342 0.53424004 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 49.402 49.402 2 0.0034425 13862 TMT1-4 96.143 35.976 138.78 158.12 165.08 121.79 149.27 181.22 131 160 167 123 154 174 1 1 1 1 1 1 40213 7317 1737 7255 11474 14901 14901 1 GLVSTLQSATEQMAATVAGSVR Unmodified 2176.1158 0.1157814 2027 Q6P2E9-2;Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 0 9 0 1 87.26 87.26 3 0.0025941 26357 TMT1-8 45.735 29.613 23.158 35.994 44.744 13.193 28.438 37.565 22 36 44 15 29 36 1 1 1 1 1 1 3434 7318 2027 7256 11475 14902 14902 1 GLVVDMDGFEEER Unmodified 1494.6661 0.66605885 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 2 0 1 64.878 64.878 2 1.0603E-06 20698 TMT1-1 94.791 73.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7319 1184 7257 11476 14903 14903 1 GLVVLGFPCNQFGHQENAK Unmodified 2114.0367 0.036743217 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 9 0 2 61.866 61.866 3;4 6.9005E-28 16488 TMT1-8 136.39 105.43 238.6 306.97 214.71 180.36 248.38 262.61 225 307 224 181 254 253 2 2 2 2 2 2 36888 7320 528 7258 11477;11478 14904;14905 14905 2 GLVVPVIR Unmodified 851.55927 0.559273 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 9 0 1 56.23 56.23 2 0.0074188 14210 TMT1-8 110.54 59.499 183.95 316.31 194.81 159.26 212.94 287.07 174 312 205 160 220 275 1 1 1 1 1 1 34297 7321 1046 7259 11479 14906 14906 1 GLVYETSVLDPDEGIR Unmodified 1761.8785 0.87849447 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 3 0 2 65.715 65.715 2;3 6.5433E-23 21480 TMT1-2 172.13 137.41 100.42 169.07 110.64 94.819 128.79 143.43 95 167 116 95 132 138 3 3 3 3 3 3 124660 7322 271 7260 11480;11481 14907;14908;14909 14908 3 GLWEQCQLLK Unmodified 1273.6489 0.64889264 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 62.98 62.98 3 7.6356E-05 18660 TMT1-7 119.68 94.985 161.61 247.17 220.05 174.08 158.6 235.32 153 246 225 174 167 225 2 2 2 2 2 2 46188 7323 471 7261 11482;11483 14910;14911 14911 2 GLYDGPVCEVSVTPK Unmodified 1619.7865 0.78650834 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 5 0 1 58.402 58.402 3 3.2308E-08 17258 TMT1-4 114.21 93.148 161.46 148.34 149.6 115.54 124.15 220.32 152 152 152 116 131 210 1 1 1 1 1 1 34221 7324 1892 7262 11484 14912 14912 1 GLYLETEAGYYK Unmodified 1405.6765 0.67654718 471 P04275;P04275-2 VWF von Willebrand factor;von Willebrand antigen 2 yes no 0 0 0 0 0 5.5 0.5 1 1 60.072 60.072 2;3 1.5644E-10 17967 TMT1-4 163.94 115.66 238.58 281.01 240.18 202.37 276.08 309.79 225 283 247 203 283 298 2 2 2 2 2 2 38192 7325 471 7263 11485;11486 14913;14914 14913 2 GLYLSDIPIHNALR Unmodified 1580.8675 0.86747627 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 7.5 0.5 1 1 60.516 60.516 3 3.6849E-17 17724 TMT1-7 133.88 104.92 53.982 72.983 62.733 66.134 62.341 76.039 51 73 65 65 65 73 1 1 1 1 1 1 9642.9 7326 1564 7264 11487;11488 14915;14916 14916 2 GLYPAPLK Unmodified 857.50109 0.50108942 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 8 0 1 53.044 53.044 2 0.0037287 14777 TMT1-7 129.96 41.37 495.11 691.83 599 454.73 424.31 742.62 468 691 613 456 450 708 2 2 2 2 2 2 86493 7327 1076 7265 11489 14917;14918 14917 2 GMAFLHTLEPLIPR Unmodified 1593.8701 0.87011881 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 8.67 0.471 1 2 71.615 71.615 3 5.0944E-119 20181 TMT1-8 284.12 236.03 413.63 815.42 662.89 515.11 556.08 753.78 393 803 681 517 579 722 4 4 4 4 4 4 290290 7328 1700 7266 11490;11491;11492 14919;14920;14921;14922 14921 4 GMAFLHTLEPLIPR Oxidation (M) 1609.865 0.86503343 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 1 0 0 9 0 1 64.455 64.455 3 0.00013527 17409 TMT1-8 80.815 56.785 77.508 78.702 71.303 57.689 77.372 106.52 73 80 73 58 80 102 1 1 1 1 1 1 18920 7329 1700 7266 11493 14923 14923 261 1 GMALLHR Oxidation (M);Acetyl (N-term) 854.44326 0.44325696 89 Q05322;O11459 yes no 1 0 1 0 0 3 0 1 38.087 38.087 2 0.028969 10551 TMT1-2 49.211 17.632 16.02 14.88 0 0 15.449 7.0212 15 15 0 0 15 7 1 1 0 0 1 1 6670 7330 89 7267 11494 14924 14924 13 1 GMATCFAYGQTGSGK Unmodified 1534.6544 0.65444831 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4;Q8N4N8 KIF2A;KIF2B Kinesin-like protein KIF2A;Kinesin-like protein KIF2B yes no 0 0 0 0 0 8 0 1 49.889 49.889 3 1.173E-05 13551 TMT1-7 92.265 78.861 84.753 108.75 90.515 95.21 113.63 96.961 80 109 94 94 116 94 1 1 1 1 1 1 10328 7331 39 7268 11495 14925 14925 1 GMDLEETSVLTQALAQSGQQLEWPEAWR Unmodified 3172.5135 0.51352796 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 7 0 1 92.37 92.37 4 0.00031812 29872 TMT1-6 48.579 35.124 15.899 22.099 14.143 15.285 14.196 23.047 15 22 15 15 15 22 1 1 1 1 1 1 4550.3 7332 800 7269 11496 14926 14926 1 GMEELIPLVNK Unmodified 1241.669 0.66895938 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 6 0 1 70.348 70.348 3 0.0349 22117 TMT1-5 47.844 20.435 30.556 51.356 50.699 28.015 35.086 37.375 29 51 51 29 36 36 1 1 1 1 1 1 5211.4 7333 1226 7270 11497 14927 14927 1 GMGGAFVLVLYDELK Unmodified 1610.8378 0.83781563 665 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 0 0 0 0 0 8 0 1 90.76 90.76 3 5.2926E-08 29289 TMT1-7 112.44 0 15.866 29.563 13.364 22.723 28 37.577 15 29 15 22 29 36 1 1 1 1 1 1 3815.3 7334 665 7271 11498 14928 14928 1 GMGGAFVLVLYDELKK Unmodified 1738.9328 0.93277864 665 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 0 0 0 0 1 8 0 1 81.253 81.253 3 2.4128E-08 25841 TMT1-7 106.29 0 92.145 124.09 97.499 111.23 111.27 174.85 87 124 102 109 117 167 2 2 2 2 2 2 11250 7335 665 7272 11499 14929;14930 14929 2 GMGYMPK Unmodified 782.34552 0.34551675 971;2913 P31146;Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1A;CORO1C Coronin-1A;Coronin-1C no no 0 0 0 0 0 8 0 1 44.644 44.644 2 0.023777 11478 TMT1-7 94.669 25.279 132.77 507.8 339.05 264.07 459.71 545.47 128 491 353 268 469 524 1 1 1 1 1 1 34198 7336 971;2913 7273 11500 14931 14931 1 GMISNLLGK Unmodified 931.51609 0.51608756 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 0 9 0 1 63.977 63.977 2 0.0049635 17282 TMT1-8 101.9 57.501 253.76 355.07 331.2 292.21 325.08 346.77 240 355 339 291 335 334 2 2 2 2 2 2 14312 7337 487 7274 11501 14932;14933 14932 2 GMLDPLEVHLLDFPNIVIK Unmodified 2162.1809 0.18094784 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 88.107 88.107 4 0.0064361 28409 TMT1-7 45.618 29.124 0 15.709 15.006 6.3293 22.721 0 0 15 15 7 22 0 0 1 1 1 1 0 1364.6 7338 2028 7275 11502 14934 14934 1 GMLREDAVLEYLK Unmodified 1535.8018 0.80176447 894 P26038 MSN Moesin yes yes 0 0 0 0 1 5.67 0.471 1 2 65.6 65.6 3;4 3.0966E-12 20356 TMT1-5 153.81 118.92 782.57 1350.4 780.51 925.75 840.26 1249.9 740 1331 838 904 885 1195 4 4 4 4 4 4 126880 7339 894 7276 11503;11504;11505 14935;14936;14937;14938;14939 14939 5 GMLTSTTEDE Unmodified 1082.4438 0.44377005 364 O95674 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 0 0 0 0 0 2 0 1 48.223 48.223 2 1.6049E-09 14229 TMT1-1 174.21 165.43 15.822 29.439 20.966 22.265 28.277 30.107 15 29 22 22 29 29 1 1 1 1 1 1 4941.5 7340 364 7277 11506 14940 14940 1 GMPVTAR Unmodified 730.37959 0.37959407 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 6 0 1 32.007 32.007 2 0.044806 6999 TMT1-5 84.064 4.2307 180.11 227.21 193.37 190.55 239.35 268.2 170 228 200 189 246 258 1 1 1 1 1 1 12102 7341 945 7278 11507 14941 14941 1 GMQLMHANAQR Unmodified 1255.5914 0.59139454 679 P13284 IFI30 Gamma-interferon-inducible lysosomal thiol reductase yes yes 0 0 0 0 0 8 0 1 33.1 33.1 3 0.0053837 6956 TMT1-7 66.92 25.933 46.069 118.79 91.497 64.004 84.41 106.32 44 116 94 65 87 102 1 1 1 1 1 1 4760.7 7342 679 7279 11508 14942 14942 1 GMSAEYSFPIWK Unmodified 1414.6591 0.65912298 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 0 8 0 1 69.994 69.994 3 0.00067394 21495 TMT1-7 80.979 66.007 61.394 72.194 80.042 42.128 63.444 76.008 58 73 80 44 65 73 1 1 1 1 1 1 7431.4 7343 3023 7280 11509 14943 14943 1 GMSDVAQEK Unmodified 963.43315 0.43314579 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 4 0 1 38.616 38.616 2 0.0032428 9782 TMT1-3 102.06 49.345 30.491 66.284 49.081 44.236 49.495 52.954 29 65 51 44 51 51 1 1 1 1 1 1 5301.2 7344 1666 7281 11510 14944 14944 1 GMSLNLEPDNVGVVVFGNDK Unmodified 2103.0307 0.030654786 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 76.538 76.538 4 0.0034572 24670 TMT1-5 48.315 31.034 84.683 123.66 89.597 95.719 89.475 129.63 80 123 94 94 94 124 2 2 2 2 2 2 13379 7345 888 7282 11511 14945;14946 14946 2 GMSLNLEPDNVGVVVFGNDK Oxidation (M) 2119.0256 0.025569409 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 0 0 6 0 1 71.128 71.128 3 1.413E-05 22478 TMT1-5 58.914 43.322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7346 888 7282 11512 14947 14947 166 1 GMTLVTPLQLLLFASK Oxidation (M) 1746.9954 0.9953789 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 0 0 9 0 1 93.671 93.671 3 0.011303 28785 TMT1-8 48.547 26.014 23.407 14.022 21.513 29.885 28.183 22.648 22 15 22 29 29 22 1 1 1 1 1 1 2093.4 7347 1619 7283 11513 14948 14948 257 1 GMTLVTPLQLLLFASK Unmodified 1731.0005 0.0004642775 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 0 9 0 2 99.489 99.489 2;3 1.0182E-10 30806 TMT1-8 112.43 82.175 30.408 90.538 62.445 51.625 48.606 68.969 29 88 65 51 51 66 1 2 2 1 2 2 15340 7348 1619 7283 11514;11515 14949;14950 14949 2 GMTTLLSSLGAQCVIASR Unmodified 1863.9547 0.95465307 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 9 0 2 74.352 74.352 2;3 9.6271E-14 21384 TMT1-8 116.36 80.36 77.372 109.62 67.991 90.409 91.609 105.05 73 109 73 88 95 101 3 3 3 3 3 3 22404 7349 1900 7284 11516;11517 14951;14952;14953 14951 3 GMYGIENEVFLSLPCILNAR Oxidation (M) 2311.1341 0.134074 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 0 8 0 1 86.712 86.712 3 0.0014405 27824 TMT1-7 55.007 43.806 15.857 21.981 21.408 22.376 20.943 30.316 15 22 22 22 22 29 1 1 1 1 1 1 9741.5 7350 527 7285 11518 14954 14954 83 1 GMYGIENEVFLSLPCILNAR Unmodified 2295.1392 0.13915938 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 8.5 0.5 1 1 91.454 91.454 3 1.2094E-35 29694 TMT1-7 156.86 153.62 85.873 96.932 92.699 61.968 72.62 117.32 81 98 94 63 76 112 4 4 4 4 4 4 52721 7351 527 7285 11519;11520 14955;14956;14957;14958 14956 4 GNAGGIQPDLLISLTAPK Unmodified 1763.9781 0.97814893 2209 Q8NCW5-2;Q8NCW5 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 0 8 0 2 74.363 74.363 2;4 8.5964E-06 23206 TMT1-7 89.507 65.125 61.247 103.08 78.599 57.229 78.712 68.11 58 102 81 58 80 66 2 2 2 2 2 2 9105.8 7352 2209 7286 11521;11522 14959;14960 14960 2 GNDIIAAAK Unmodified 871.47633 0.47633123 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.25 1.92 1 2 1 45.609 45.609 2;3 0.00033149 12270 TMT1-4 140.75 77.268 1679.4 2021 2044.6 1468.8 1724.7 2333.3 1586 2038 2070 1485 1790 2235 5 5 5 5 5 5 422390 7353 776 7287 11523;11524;11525;11526 14961;14962;14963;14964;14965 14963 5 GNDISSGTVLSDYVGSGPPK Unmodified 1948.9378 0.93780026 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 5.5 0.5 1 1 61.446 61.446 3 1.5777E-23 18483 TMT1-4 132.67 113.61 285.3 248.17 170.63 223.65 236.66 302.39 268 254 182 218 246 290 2 2 2 2 2 2 91293 7354 954 7288 11527;11528 14966;14967 14966 2 GNDLLLK Unmodified 771.44905 0.44905385 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 6 0 1 51.148 51.148 2 0.043882 14616 TMT1-5 84.476 50.398 452.35 512.62 544.25 496.99 384.82 587.04 427 519 554 491 409 561 1 1 1 1 1 1 46782 7355 378 7289 11529 14968 14968 1 GNDTFVTLDEILR Unmodified 1491.7569 0.75692277 1210 P49959-2;P49959;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 0 5 0 1 75.073 75.073 2 0.0019571 23837 TMT1-4 63.989 34.613 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7356 1210 7290 11530 14969 14969 1 GNDVAFHFNPR Unmodified 1272.6 0.59996862 768 P17931 LGALS3 Galectin-3 yes yes 0 0 0 0 0 6 0 1 42.249 42.249 3 2.8936E-05 11044 TMT1-5 110.86 83.694 92.146 123.02 98.298 94.751 113.36 105.5 87 123 102 94 116 102 1 1 1 1 1 1 17730 7357 768 7291 11531 14970 14970 1 GNEFEDYCLK Unmodified 1273.5285 0.52850274 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 0 4 0 1 54.306 54.306 3 0.0025374 15954 TMT1-3 79.82 57.947 77.014 116.18 122.61 69.909 136.77 127.22 73 116 123 73 138 123 1 1 1 1 1 1 13900 7358 895 7292 11532 14971 14971 1 GNEFFCEVDEDYIQDK Unmodified 2006.8204 0.82038724 1485 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 0 3 0 1 69.215 69.215 3 0.00055285 22846 TMT1-2 70.091 53.968 23.149 28.412 52.8 12.575 35.795 37.355 22 29 51 15 36 36 1 1 1 1 1 1 7051.8 7359 1485 7293 11533 14972 14972 1 GNEFLFSHLWPLIEK Unmodified 1828.9512 0.9512059 1921 Q2TAA2;Q2TAA2-2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes no 0 0 0 0 0 9 0 1 80.26 80.26 3 3.3176E-06 23704 TMT1-8 94.119 61.843 30.268 74.298 79.739 49.631 72.282 52.303 29 73 80 51 73 51 1 1 1 1 1 1 11427 7360 1921 7294 11534 14973 14973 1 GNEIVLSAGSTPR Unmodified 1299.6783 0.67827852 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 44.074 44.074 2 3.2025E-11 11654 TMT1-4 150.69 76.228 38.185 66.279 18.314 29.662 50.166 52.935 36 65 22 29 51 51 1 1 1 1 1 1 7492.3 7361 1763 7295 11535 14974 14974 1 GNFGGSFAGSFGGAGGHAPGVAR Unmodified 2033.9456 0.94562002 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 8.5 0.5 1 1 49.633 49.633 3 2.6527E-63 11637 TMT1-8 159.42 136.19 38.33 35.382 20.166 29.669 43.899 22.199 36 36 22 29 44 22 1 1 1 1 1 1 11656 7362 1261 7296 11536;11537 14975;14976 14976 2 GNFHAVYR Unmodified 962.47225 0.47224891 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 4.67 2.62 1 1 1 31.069 31.069 3 0.0016707 6830 TMT 1-phospho 101.6 71.794 592.05 1013.8 805.7 665.07 963.76 1048.1 561 1003 831 669 985 1009 5 5 5 5 5 5 146750 7363 486 7297 11538;11539;11540 14977;14978;14979;14980;14981 14977 5 GNFHAVYRDDLK Unmodified 1433.7052 0.70516197 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 1 6 0 1 39.013 39.013 3 0.0086024 9865 TMT1-5 65.295 33.656 92.042 146.47 95.817 118.85 118.26 143.73 87 145 102 116 123 138 1 1 1 1 1 1 27626 7364 486 7298 11541 14982 14982 1 GNFNYIEFTR Unmodified 1259.5935 0.59348625 115 P19105;O14950 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 58.273 58.273 2 5.3972E-15 17248 TMT1-5 191.4 154.06 2307.1 3152.9 2708.9 2181.6 2809.8 3411 2180 3152 2779 2192 2894 3275 6 6 6 6 6 6 892860 7365 115 7299 11542;11543;11544;11545 14983;14984;14985;14986;14987;14988 14984 6 GNFNYVEFTR Unmodified 1245.5778 0.57783619 879 P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 0 6.5 1.12 1 1 1 1 54.736 54.736 2 2.4143E-09 15917 TMT1-5 171.33 144.19 825.76 904.41 932.76 775.57 846.08 1037.6 779 917 948 775 877 996 4 4 4 4 4 4 356000 7366 879 7300 11546;11547;11548;11549 14989;14990;14991;14992;14993 14990 5 GNFTLPEVAECFDEITYVELQK Unmodified 2601.2309 0.23087074 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 5 0 1 92.159 92.159 4 0.033969 30473 TMT1-4 31.314 24.81 15.857 21.981 21.409 22.366 21.456 15.378 15 22 22 22 22 15 1 1 1 1 1 1 2421.1 7367 1545 7301 11550 14994 14994 1 GNFTLPEVAECFDEITYVELQKEEAQK Unmodified 3186.5067 0.50671125 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 5 0 2 86.047 86.047 4;5 3.4906E-12 28189 TMT1-4 90.633 75.588 61.619 43.636 66.447 21.412 95.808 75.084 58 44 65 22 95 73 2 1 2 1 2 2 17248 7368 1545 7302 11551;11552 14995;14996 14996 2 GNHAAFQADVSEAR Unmodified 1471.6804 0.68040378 2293 Q92506 HSD17B8 Estradiol 17-beta-dehydrogenase 8 yes yes 0 0 0 0 0 3.5 0.5 1 1 32.277 32.277 3 1.0909E-05 8338 TMT1-2 79.885 48.996 46.407 104.62 46.706 44.117 63.353 76.01 44 102 51 44 65 73 1 1 1 1 1 1 5866.8 7369 2293 7303 11553;11554 14997;14998 14997 2 GNHECASINR Unmodified 1156.5044 0.50435367 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 3.67 1.7 1 1 1 19.879 19.879 3 3.4676E-05 3409 TMT1-2 131.09 120.26 51.775 71.881 73.953 58.893 63.061 95.207 49 72 75 59 66 91 6 6 6 6 6 6 12511 7370 1044;1413;1414 7304 11555;11556;11557 14999;15000;15001;15002;15003;15004 15001 6 GNILIPGINEAVAAVTEEEHK Unmodified 2203.1485 0.14846174 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5.33 0.471 2 1 75.859 75.859 3;4 2.503E-07 24257 TMT1-4 83.395 80.672 338.07 418.16 354.46 258.45 360.84 447.02 319 420 363 262 371 429 5 5 5 5 5 5 48063 7371 2434 7305 11558;11559;11560 15005;15006;15007;15008;15009 15006 5 GNIMLSQK Unmodified 889.46914 0.46913736 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 8 0 1 45.09 45.09 2 0.026991 11660 TMT1-7 83.948 33.907 46.006 142.36 82.119 72.763 113.31 136.41 44 138 87 73 116 131 1 1 1 1 1 1 8503.1 7372 1250 7306 11561 15010 15010 1 GNKPWISLPR Unmodified 1166.656 0.65602693 1440 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 1 9 0 1 49.985 49.985 3 0.00012752 11755 TMT1-8 109.16 76.036 356.57 503.08 418.94 297.55 460.24 515.6 337 502 429 303 470 496 1 1 1 1 1 1 46156 7373 1440 7307 11562 15011 15011 1 GNLANVIR Unmodified 855.49265 0.49265 665;488 P05141;Q9H0C2;P12236;P12235 SLC25A5;SLC25A31;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 7 0 1 43.459 43.459 2 0.029162 10899 TMT1-6 82.386 8.1949 559.3 635.07 679.95 552.87 818.89 1091.7 528 643 689 557 843 1046 1 1 1 1 1 1 135900 7374 488;665 7308 11563 15012 15012 1 GNLEVLLFTIQSK Unmodified 1460.8239 0.82388012 1546 Q01082;Q01082-3;Q01082-2;O15020-2;O15020 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 0 0 9 0 2 81.952 81.952 2;3 1.1633E-15 24324 TMT1-8 150.69 94.435 53.765 72.38 99.692 136 66.201 83.391 51 73 102 131 72 80 2 2 2 2 2 2 22994 7375 1546 7309 11564;11565 15013;15014 15013 2 GNLEVLLFTIQSR Unmodified 1488.83 0.83002813 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 9 0 1 79.028 79.028 2 4.6252E-06 23195 TMT1-8 108.01 84.158 54.386 42.809 20.303 14.78 21.549 22.837 51 44 22 15 22 22 1 1 1 1 1 1 5193.4 7376 651 7310 11566 15015 15015 1 GNLYWTDWNR Unmodified 1323.5996 0.59963426 704;1749 P14543-2;P14543;Q14112-2;Q14112 NID1;NID2 Nidogen-1;Nidogen-2 no no 0 0 0 0 0 7 0 1 60.574 60.574 2 5.686E-05 17687 TMT1-6 145.25 90.535 84.136 130.77 175.62 98.359 141.43 166.52 80 131 174 102 145 160 1 1 1 1 1 1 24064 7377 704;1749 7311 11567 15016 15016 1 GNNVLYISTQK Unmodified 1235.651 0.65100113 1431 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 0 0 0 0 0 7 0 1 51.194 51.194 3 0.0027696 13958 TMT1-6 75.695 47.953 107.77 168.09 139.68 147.68 131.84 166.8 102 167 145 145 138 160 1 1 1 1 1 1 21219 7378 1431 7312 11568 15017 15017 1 GNPGSHFCGGTLIHPSFVLTAAHCLR Unmodified 2805.3592 0.35915676 872 P24158 PRTN3 Myeloblastin yes yes 0 0 0 0 0 9 0 1 53.985 53.985 5 6.7528E-09 13374 TMT1-8 67.01 53.178 68.504 140.72 89.371 79.667 130.05 96.493 65 138 94 80 131 94 1 1 1 1 1 1 8380.6 7379 872 7313 11569 15018 15018 1 GNPPLWLALANNLEDIASTLVR Unmodified 2376.2801 0.28014461 2830 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 0 9 0 1 111.81 111.81 3 0.0074262 34588 TMT1-8 42.618 31.144 0 4.256 0 0 4.184 0 0 4 0 0 4 0 0 1 0 0 1 0 1116.9 7380 2830 7314 11570 15019 15019 1 GNPQNQVLLHK Unmodified 1246.6782 0.67821894 1782 Q14571 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 0 0 0 0 0 7 0 1 39.45 39.45 3 0.00053352 9380 TMT1-6 91.549 71.22 61.542 41.308 81.223 57.21 71.42 67.252 58 44 80 58 73 65 1 1 1 1 1 1 4917.9 7381 1782 7315 11571 15020 15020 1 GNPTVEVDLFTSK Unmodified 1405.7089 0.70890994 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 0 4 2.16 1 1 1 63.903 63.903 3 3.8073E-11 19581 TMT1-5 138.35 23.559 1637.8 2565.8 2081.8 1458.2 1938.5 2458.3 1550 2548 2134 1481 1998 2358 7 7 7 7 7 7 466060 7382 514 7316 11572;11573;11574 15021;15022;15023;15024;15025;15026;15027 15026 7 GNPTVEVDLYTAK Unmodified 1405.7089 0.70890994 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 5 0 1 56.484 56.484 2 4.1186E-06 16530 TMT1-4 115.8 13.144 38.121 50.991 42.025 52.33 48.317 76.439 36 51 44 51 51 73 1 1 1 1 1 1 11118 7383 581 7317 11575 15028 15028 1 GNSDGTLVLFFSDLK Unmodified 1611.8144 0.81443765 942 P29728;P29728-2;P29728-3 OAS2 2'-5'-oligoadenylate synthase 2 yes no 0 0 0 0 0 7 0 1 82.987 82.987 3 5.5831E-06 26466 TMT1-6 98.694 75.458 30.584 66.543 33.17 36.719 34.685 37.386 29 65 36 36 36 36 1 1 1 1 1 1 6772.4 7384 942 7318 11576 15029 15029 1 GNSFPASLVVAAEEGER Unmodified 1731.8428 0.84277766 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 4.83 0.373 1 5 65.771 65.771 2;3 4.877E-24 20255 TMT1-4 125.33 111.67 108.97 159.73 125.67 133.29 185.64 172.72 103 159 131 132 189 167 4 4 4 4 4 4 31399 7385 565 7319 11577;11578;11579;11580;11581;11582 15030;15031;15032;15033;15034;15035;15036;15037 15035 8 GNSFPASLVVAAEEGEREQNSLDSWGPK Unmodified 2973.4104 0.4104431 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 5.4 0.49 3 2 73.296 73.296 3;4;5 4.9568E-29 23177 TMT1-5 117.83 99.727 1950.7 2169.1 1956.5 1661.8 1856.1 2606.7 1839 2193 2006 1659 1933 2495 16 16 16 16 16 16 204180 7386 565 7320 11583;11584;11585;11586;11587 15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053 15047 16 GNTAAQLSK Unmodified 888.46649 0.46649483 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 6 0 1 35.148 35.148 2 0.0018238 8229 TMT1-5 112.36 46.284 328.27 540.57 454.62 323.64 471.2 405.49 311 536 465 329 478 393 2 2 2 2 2 2 84919 7387 967 7321 11588 15054;15055 15054 2 GNTAAQMAQILSFNK Unmodified 1592.7981 0.79807608 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 9 0 2 68.728 68.728 2;3 1.1644E-26 19165 TMT1-8 152.99 123.52 23.177 44.682 34.187 44.163 42.426 45.693 22 44 36 43 44 44 1 1 1 1 1 1 30012 7388 1014 7322 11589;11590 15056;15057 15057 2 GNTAAYLLYAFTR Unmodified 1459.746 0.74596415 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 76.152 76.152 2 0.0017042 22058 TMT1-8 80.96 55.743 54.221 49.906 42.003 52.469 40.981 76.649 51 51 44 51 44 73 1 1 1 1 1 1 7830.8 7389 1296 7323 11591 15058 15058 1 GNTSGSHIVNHLVR Unmodified 1489.775 0.77497287 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 8 1 1 1 30.22 30.22 4 0.012155 5750 TMT1-6 51.092 35.462 57.399 53.888 45.566 39.636 72.741 52.29 54 55 47 40 73 51 2 2 2 2 2 2 2068.9 7390 2328 7324 11592;11593 15059;15060 15059 2 GNVDISAPK Unmodified 899.47125 0.47124585 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 42.076 42.076 2 3.2935E-05 10871 TMT1-4 123.63 64.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7391 1632 7325 11594 15061 15061 1 GNVFSSPTAAGTPNK Unmodified 1446.7103 0.71030693 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 7 0 1 46.675 46.675 3 1.5294E-10 12171 TMT1-6 119 89.7 99.729 107.59 99.16 95.301 81.396 152.25 94 109 102 94 87 145 1 1 1 1 1 1 34030 7392 1597 7326 11595 15062 15062 1 GNVFSSPTAAGTPNKETAGLK Unmodified 2046.0382 0.038183005 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 8 0 1 49.749 49.749 4 7.9959E-24 13477 TMT1-7 131.54 116.96 344.26 351.01 272.71 240.13 141.17 502.32 324 356 283 237 162 475 1 1 1 1 1 1 40537 7393 1597 7327 11596 15063 15063 1 GNVGFVFTK Unmodified 967.51272 0.51271674 496 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 0 9 0 1 58.518 58.518 2 0.00088512 15109 TMT1-8 129.38 84.935 360.44 594.43 412.35 370.62 548.03 481.12 341 588 431 371 556 466 2 2 2 2 2 2 69354 7394 496 7328 11597 15064;15065 15064 2 GNVGVVLFNFGK Unmodified 1249.6819 0.68190733 1001 P33316-2;P33316 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 0 9 0 1 72.145 72.145 2 8.1357E-13 20507 TMT1-8 160.36 116.16 69.131 56.12 55.692 75.162 69.532 98.22 65 58 58 73 73 94 1 1 1 1 1 1 8191.7 7395 1001 7329 11598 15066 15066 1 GNVPSSELQIYTWMDATLK Unmodified 2152.0511 0.051055878 66 O00422;O00422-2 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 0 7 0 1 81.66 81.66 3 2.7345E-15 25957 TMT1-6 100.21 90.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7396 66 7330 11599 15067 15067 1 GNVQVVIPFLTESYSSSQDPPEK Unmodified 2520.2384 0.23839896 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 6 0 1 76.868 76.868 3 3.6899E-09 24713 TMT1-5 82.267 67.012 23.213 36.147 35.377 28.94 34.493 53.382 22 36 36 29 36 51 1 1 1 1 1 1 13966 7397 845 7331 11600 15068 15068 1 GNWDEQFDKENTEER Unmodified 1895.7922 0.79219865 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 1 2.5 0.5 1 1 46.286 46.286 3 4.2701E-28 13718 TMT1-2 189.8 169.25 260.05 431.04 471.17 301.79 360.09 350.03 247 429 473 308 369 338 2 2 2 2 2 2 38726 7398 1014 7332 11601;11602 15069;15070 15070 2 GNWGHLDQVAALR Unmodified 1435.732 0.73204542 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 7 0 1 50.949 50.949 3 6.3509E-06 13904 TMT1-6 107.37 73.963 91.167 273.55 135.2 132.38 146.14 197.3 87 265 146 131 152 189 1 1 1 1 1 1 34360 7399 853 7333 11603 15071 15071 1 GNWLLVGSPWSGFPENR Unmodified 1914.9377 0.9376811 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 2 79.281 79.281 2;3 1.4281E-26 23318 TMT1-8 140.81 114.37 92.985 123.37 137.25 94.088 83.284 98.893 88 124 138 95 87 95 2 2 2 2 2 2 40146 7400 758 7334 11604;11605 15072;15073 15072 2 GNYFLWTEK Unmodified 1156.5553 0.55530983 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 8 0 1 64.41 64.41 2 0.010181 19253 TMT1-7 88.681 43.313 76.889 123.39 137.4 92.705 98.283 120.85 73 123 138 94 102 116 1 1 1 1 1 1 20414 7401 300 7335 11606 15074 15074 1 GNYSLITK Unmodified 894.48108 0.48108226 2115 Q86VM9-2;Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 0 0 0 0 0 7 0 1 48.769 48.769 2 0.0045831 13037 TMT1-6 76.17 32.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7402 2115 7336 11607 15075 15075 1 GPAFNMASPESDFGINLK Unmodified 1893.8931 0.89309867 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 73.029 73.029 3 9.9394E-05 22468 TMT1-6 73.953 54.375 46.636 65.322 41.469 44.547 57.067 45.276 44 65 44 44 58 44 1 1 1 1 1 1 117160 7403 1632 7337 11608 15076 15076 1 GPAFVNPLIPESPEEEELFR Unmodified 2269.1267 0.12666366 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 0 5 0 1 79.876 79.876 3 0.00017653 25709 TMT1-4 63.355 59.451 23.333 28.926 21.308 14.424 37.271 22.388 22 29 22 15 37 22 1 1 1 1 1 1 4941.7 7404 2980 7338 11609 15077 15077 1 GPALLVLGPDAIQLR Unmodified 1531.9086 0.9086128 2080 Q7L591;Q7L591-3;Q7L591-2;Q7L591-4 DOK3 Docking protein 3 yes no 0 0 0 0 0 8.5 0.5 1 1 75.95 75.95 3 1.8078E-05 22041 TMT1-8 77.204 43.318 69.746 93.628 100.83 80.104 70.513 130.17 66 94 102 80 73 124 3 3 3 3 2 3 25556 7405 2080 7339 11610;11611 15078;15079;15080 15080 3 GPAPDPCLVPLALEALVGAVHVLHASR Unmodified 2758.4952 0.49523954 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 91.609 91.609 4 0.0045112 28009 TMT1-8 37.934 26.791 15.908 22.122 12.736 46.827 26.891 37.609 15 22 15 44 29 36 1 1 1 1 1 1 5203.4 7406 2061 7340 11612 15081 15081 1 GPAVGIDLGTTYSCVGVFQHGK Unmodified 2262.1103 0.11030209 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 8 0.816 1 1 1 63.513 63.513 4 1.3135E-20 17077 TMT1-8 114.99 95.911 673.77 871.45 717.2 672.53 789.71 867.58 636 873 742 668 813 835 4 4 4 4 4 4 231660 7407 641 7341 11613;11614;11615 15082;15083;15084;15085 15085 4 GPAYGLSR Unmodified 819.4239 0.42390173 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 5.5 0.5 1 1 35.609 35.609 2 0.0008631 8505 TMT1-5 147.34 84.127 2606.8 3358.3 3025.8 2627 2993.3 3745.8 2462 3369 3103 2620 3100 3594 3 3 3 3 3 3 546670 7408 1052 7342 11616;11617 15086;15087;15088 15088 3 GPCGWTGGSCPQR Unmodified 1418.582 0.58195206 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 7 0 1 37.367 37.367 2 8.702E-11 8504 TMT1-6 143.28 128.13 30.523 58.819 49.933 35.158 64.571 52.523 29 58 51 36 65 51 1 1 1 1 1 1 7925.3 7409 1684 7343 11618 15089 15089 1 GPDAAPFLLGLLTNELPLPSPAAAGAPPAAR Unmodified 2964.6073 0.60729241 1975 Q5T440 IBA57 Putative transferase CAF17, mitochondrial yes yes 0 0 0 0 0 9 0 1 98.905 98.905 4 0.0031213 30619 TMT1-8 34.37 25.98 7.3304 30.283 4.6852 23.231 28.489 22.639 7 29 7 22 29 22 1 1 1 1 1 1 2381.7 7410 1975 7344 11619 15090 15090 1 GPDGLTAFEATDNQAIK Unmodified 1746.8424 0.84244331 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 0 4.67 0.471 1 2 60.66 60.66 2;4 9.5828E-35 18149 TMT1-4 181.66 136.3 345.6 426.33 344.59 298.18 371.86 469.09 326 428 356 298 384 450 3 3 3 3 3 3 175250 7411 1347 7345 11620;11621;11622 15091;15092;15093 15092 3 GPDPSSPAFR Unmodified 1029.488 0.48795855 554;32 CON__Q28194;P07996 THBS1 Thrombospondin-1 no no 0 0 0 0 0 4.8 2.32 1 1 1 1 1 38.194 38.194 2 5.98E-14 9260 TMT1-4 180.34 133.97 3337.2 4269 3394.6 3166.9 3862.8 4414.9 3149 4277 3520 3149 3977 4245 7 7 7 7 7 7 986270 + 7412 32;554 7346 11623;11624;11625;11626;11627 15094;15095;15096;15097;15098;15099;15100 15097 7 GPDWHLK Unmodified 851.42899 0.42898711 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 43.729 43.729 3 0.018565 11667 TMT1-5 69.344 26.318 176.76 287.5 164.77 120.19 235.37 265.11 167 284 174 123 239 255 1 1 1 1 1 1 12253 7413 1632 7347 11628 15101 15101 1 GPDWILGEIK Unmodified 1126.6023 0.60226003 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 6 0 1 71.888 71.888 3 0.0021108 22741 TMT1-5 83 41.016 30.589 75.19 25.074 36.778 57.167 52.735 29 73 29 36 58 51 1 1 1 1 1 1 7729.2 7414 1206 7348 11629 15102 15102 1 GPEAGYVATPIAMVQAAMTLLSDASHLPK Unmodified 2938.4933 0.49325021 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 9 0 1 106.25 106.25 4 0.029765 33257 TMT1-8 26.422 18.43 16.02 14.88 0 7.3723 14.817 15.567 15 15 0 7 15 15 1 1 0 1 1 1 1491.3 7415 2206 7349 11630 15103 15103 1 GPEDTAQLAHAVLAK Unmodified 1519.7995 0.79945628 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 6 0 1 56.887 56.887 3 1.1486E-11 16903 TMT1-5 128.76 80.848 123.24 129.46 96.347 126.35 124.97 181.92 116 131 102 123 131 174 1 1 1 1 1 1 23279 7416 1878 7350 11631 15104 15104 1 GPEVDLK Unmodified 756.40177 0.4017693 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4 0 1 43.627 43.627 2 0.011901 11724 TMT1-3 103.92 0 178.26 343.85 225.15 194.63 328.71 249.66 169 338 236 196 331 243 1 1 1 1 1 1 36563 7417 1632 7351 11632 15105 15105 1 GPFLVALGK Unmodified 900.54329 0.54328858 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 9 0 1 66.997 66.997 2 0.00026081 18506 TMT1-8 135.35 115.07 378.48 385.22 443.48 364.39 432.16 573.97 357 393 448 365 448 550 2 2 2 2 2 2 46532 7418 2411 7352 11633 15106;15107 15107 2 GPFPPVWNPITYLDHNNFWR Unmodified 2469.2018 0.20183471 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 9 0 1 84.985 84.985 3 1.7529E-05 25496 TMT1-8 60.062 44.973 93.496 92.415 77.589 66.336 62.625 67.503 88 94 80 66 65 65 2 2 2 2 2 2 18800 7419 908 7353 11634 15108;15109 15108 2 GPFSEISAFK Unmodified 1081.5444 0.5444108 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 8 0 1 65.406 65.406 3 4.4395E-05 19672 TMT1-7 80.688 50.945 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7420 1248 7354 11635 15110 15110 1 GPFTDVVTTNLK Unmodified 1290.682 0.68196691 2813;345 Q9P0L0;Q9P0L0-2;O95292;O95292-2 VAPA;VAPB Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C no no 0 0 0 0 0 7.5 0.5 1 1 62.523 62.523 3 1.0915E-07 18482 TMT1-6 120.96 97.21 184.91 162.5 162.86 160.61 242.74 209.47 174 167 167 160 246 203 2 2 2 2 2 2 23805 7421 2813;345 7355 11636;11637 15111;15112 15111 2 GPFVEAEVPDVDLECPDAK Unmodified 2085.9565 0.95648679 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3.33 0.471 2 1 69.566 69.566 3;4 2.6383E-17 21896 TMT1-3 117.26 91.939 100.84 107.63 92.562 73.224 113.84 120.41 95 109 95 74 116 116 3 3 3 3 3 3 20882 7422 1632 7356 11638;11639;11640 15113;15114;15115 15115 3 GPFWTWEPSAPR Unmodified 1429.6779 0.67788459 1982 Q5TEJ8-3;Q5TEJ8-5;Q5TEJ8;Q5TEJ8-2;Q5TEJ8-6 THEMIS2 Protein THEMIS2 yes no 0 0 0 0 0 9 0 1 67.646 67.646 2 0.0074621 18747 TMT1-8 67.726 47.964 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7423 1982 7357 11641 15116 15116 1 GPFYFILGADPQFGLIK Unmodified 1882.0029 0.0029071185 2514 Q9BRF8;Q9BRF8-2;Q9BRF8-3 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes no 0 0 0 0 0 9 0 2 93.281 93.281 3;4 1.3718E-07 28717 TMT1-8 81.632 58.175 115.8 221.02 186.7 113.07 195.97 142.58 110 218 190 117 197 139 5 5 5 5 5 5 18161 7424 2514 7358 11642;11643 15117;15118;15119;15120;15121 15118 5 GPGASGEQPEPGEAAAGGAAEEAR Unmodified 2164.9621 0.96211753 2640 Q9H3P7 ACBD3 Golgi resident protein GCP60 yes yes 0 0 0 0 0 2 0 1 37.657 37.657 3 9.8966E-07 10063 TMT1-1 72.899 69.66 16.02 14.88 0 15.986 21.75 15.369 15 15 0 15 22 15 1 1 0 1 1 1 7607.2 7425 2640 7359 11644 15122 15122 1 GPGASVHDR Unmodified 894.43078 0.43077802 1128 P46379-4;P46379-5;P46379-2;P46379;P46379-3 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 0 3 0 1 18.595 18.595 3 0.008404 3242 TMT1-2 68.657 44.685 7.407 8.9105 9.9336 7.059 0 12.792 7 9 10 7 0 12 1 1 1 1 0 1 678.56 7426 1128 7360 11645 15123 15123 1 GPGGASNCGTPQLDTEAAAGPPAR Unmodified 2251.0288 0.028757306 2330 Q92908 GATA6 Transcription factor GATA-6 yes yes 0 0 0 0 0 3 0 1 74.081 74.081 3 0.0025813 24696 TMT1-2 33.425 19.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7427 2330 7361 11646 15124 15124 1 GPGGSPGGLQK Unmodified 953.49304 0.49304393 2356 Q96A00-2;Q96A00 PPP1R14A Protein phosphatase 1 regulatory subunit 14A yes no 0 0 0 0 0 6 0 1 36.853 36.853 2 0.0016068 8933 TMT1-5 97.277 58.129 107.84 160.74 133.59 124.25 118.27 136.27 102 160 138 123 123 131 1 1 1 1 1 1 13699 7428 2356 7362 11647 15125 15125 1 GPGLFFILPCTDSFIK Unmodified 1810.9328 0.93277864 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 9 0 4 89.238 89.238 2;3;4 4.0178E-12 27124 TMT1-8 119.96 85.009 727.14 752.62 863.86 789.13 808.24 964.05 686 767 876 783 839 926 6 6 6 6 6 6 337560 7429 906 7363 11648;11649;11650;11651 15126;15127;15128;15129;15130;15131 15129 6 GPGTSFEFALAIVEALNGK Unmodified 1919.9993 0.9992783 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 9 0 1 101.84 101.84 3 2.5954E-22 31816 TMT1-8 134.76 111.52 77.067 124.96 106.17 87.068 90.129 122.15 73 124 109 87 94 117 3 3 3 3 3 3 11094 7430 2468 7364 11652 15132;15133;15134 15133 3 GPGTSFEFALAIVEALNGKEVAAQVK Unmodified 2645.4065 0.40646734 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 8 0 1 95.177 95.177 4 4.773E-08 31011 TMT1-7 75.184 62.751 23.281 21.226 36.604 21.475 20.728 37.785 22 22 36 22 22 36 1 1 1 1 1 1 2511.9 7431 2468 7365 11653 15135 15135 1 GPGVGLLGISK Unmodified 996.59678 0.59678072 1195 P49753;Q86TX2;P49753-2 ACOT2;ACOT1 Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 1 yes no 0 0 0 0 0 9 0 1 60.874 60.874 2 0.00378 16070 TMT1-8 72.275 38.318 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7432 1195 7366 11654 15136 15136 1 GPGVYILLSK Unmodified 1045.6172 0.61718181 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 9 0 1 66.799 66.799 3 0.0057674 18365 TMT1-8 64.297 45.517 46.443 88.529 54.255 66.344 78.036 75.591 44 87 58 65 80 73 1 1 1 1 1 1 7831.5 7433 671 7367 11655 15137 15137 1 GPHALGAPSLLLTGTQLYGR Unmodified 2021.1058 0.10580906 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6.33 3.77 1 2 62.413 62.413 2;3 1.9689E-40 16615 TMT1-8 155.92 131.09 147.68 223.35 237.01 167.06 187.69 250.48 140 223 239 169 195 240 4 4 4 4 4 4 479450 7434 565 7368 11656;11657;11658 15138;15139;15140;15141 15141 4 GPHLVQSDGTVPFWAHAGNAIPSSDQIR Unmodified 2956.458 0.45800241 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 7 0 1 57.929 57.929 4 1.7968E-06 16676 TMT1-6 65.275 62.952 46.836 34.578 33.942 60.582 41.964 37.179 44 36 36 58 44 36 1 1 1 1 1 1 18313 7435 1174 7369 11659 15142 15142 1 GPHVDVSGPDIDIEGPEGK Unmodified 1916.9116 0.91158551 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 53.964 53.964 5 0.010452 15794 TMT1-3 40.349 21.274 77.351 102.01 77.858 49.187 101.86 74.911 73 102 80 51 102 73 1 1 1 1 1 1 8594.7 7436 1632 7370 11660 15143 15143 1 GPIKFNVWDTAGQEK Unmodified 1688.8522 0.85222014 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 1 8 0 1 59.163 59.163 3 4.4978E-07 17223 TMT1-7 82.59 58.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7437 1445 7371 11661 15144 15144 1 GPLALPAWLQPR Unmodified 1317.7557 0.75574098 1989 Q5VWC8 HACD4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 yes yes 0 0 0 0 0 9 0 1 74.355 74.355 2 8.6224E-05 21379 TMT1-8 99.802 72.84 38.147 34.874 51.322 35.355 49.647 60.411 36 36 51 36 51 58 1 1 1 1 1 1 6954.4 7438 1989 7372 11662 15145 15145 1 GPLGPNWK Unmodified 867.46029 0.46028724 1166;1536 Q00169;P48739;P48739-2;P48739-3 PITPNA;PITPNB Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform no no 0 0 0 0 0 9 0 1 51.091 51.091 2 0.013519 12287 TMT1-8 84.244 43.975 108.09 145.23 105.15 79.313 98.899 120.83 102 145 109 80 102 116 1 1 1 1 1 1 15021 7439 1536;1166 7373 11663 15146 15146 1 GPLLVQDVVFTDEMAHFDR Unmodified 2188.0623 0.062289266 457 P04040 CAT Catalase yes yes 0 0 0 0 0 5 0 1 75.493 75.493 3 2.5533E-17 24017 TMT1-4 117.65 107.02 38.168 51.121 34.066 36.518 42.521 53.153 36 51 36 36 44 51 1 1 1 1 1 1 30073 7440 457 7374 11664 15147 15147 1 GPLMMYISK Unmodified 1038.5242 0.5242094 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 9 0 1 66.023 66.023 2 0.0035797 18148 TMT1-8 105.57 62.747 123.86 198.28 114.24 141.99 108 198.39 117 196 123 138 116 189 2 2 2 2 2 2 12189 7441 685 7375 11665 15148;15149 15149 2 GPLPAAPPVAPER Unmodified 1270.7034 0.70337105 2708 Q9NQC3-2;Q9NQC3 RTN4 Reticulon-4 no no 0 0 0 0 0 5 0 2 48.595 48.595 2;3 1.3908E-12 13421 TMT1-4 158.85 140.31 391.78 579.96 387.79 379.32 511.72 521.6 370 576 408 377 523 503 3 3 3 3 3 3 138850 7442 2708 7376 11666;11667 15150;15151;15152 15150 3 GPLQSVQVFGR Unmodified 1186.6459 0.64585618 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 8.5 0.5 1 1 56.829 56.829 2 0.00034241 14459 TMT1-8 91.469 59.514 84.903 85.422 85.007 80.223 114.32 96.942 80 87 87 80 116 94 1 1 1 1 1 1 11210 7443 1419 7377 11668;11669 15153;15154 15154 2 GPMFELLPGESNK Unmodified 1417.6912 0.69115139 624 P10124 SRGN Serglycin yes yes 0 0 0 0 0 6.33 0.471 2 1 67.53 67.53 2;3 0.00037083 21032 TMT1-5 81.918 51.713 433.34 520.19 485.92 486.78 589.36 645.17 409 524 500 482 606 621 3 3 3 3 3 3 82130 7444 624 7378 11670;11671;11672 15155;15156;15157 15155 3 GPMFELLPGESNKIPR Unmodified 1783.9291 0.92909025 624 P10124 SRGN Serglycin yes yes 0 0 0 0 1 8 0 1 62.865 62.865 3 0.00017758 18676 TMT1-7 65.212 45.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7445 624 7379 11673 15158 15158 1 GPNKHTLTQIK Unmodified 1235.6986 0.69862003 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 1 9 0 1 36.85 36.85 4 0.00086362 7001 TMT1-8 85.813 33.023 240 262.47 198.11 151.39 156.02 340.93 226 265 205 152 167 324 1 1 1 1 1 1 9976.2 7446 1068 7380 11674 15159 15159 1 GPPASSPAPAPK Unmodified 1075.5662 0.56620887 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 6 0 1 35.691 35.691 3 3.8492E-05 8426 TMT1-5 102.95 81.082 875.58 1164.8 814.92 902.78 673.83 1527.5 826 1163 859 882 734 1451 3 3 3 3 3 3 135660 7447 1881 7381 11675 15160;15161;15162 15160 3 GPPDFSSDEEREPTPVLGSGAAAAGR Unmodified 2569.2045 0.20447307 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 3 0 1 50.706 50.706 3 2.5405E-16 15513 TMT1-2 101.86 78.137 54.071 41.934 73.964 50.133 63.883 52.543 51 44 73 51 65 51 1 1 1 1 1 1 28457 7448 1089;1090 7382 11676 15163 15163 1 GPPDSDFDGGVYHGR Unmodified 1574.675 0.67498405 2986 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 yes yes 0 0 0 0 0 3 0 1 40.413 40.413 3 1.7674E-05 11447 TMT1-2 91.076 86.021 107.85 137.02 151.96 83.942 111.22 182.31 102 138 152 87 116 174 1 1 1 1 1 1 20129 7449 2986 7383 11677 15164 15164 1 GPPIEDAIASSDVLETASK Unmodified 1898.9473 0.94730231 3007 Q9Y450;Q9Y450-4 HBS1L HBS1-like protein yes no 0 0 0 0 0 4 0 1 69.187 69.187 3 1.4217E-06 21847 TMT1-3 80.585 70.528 54.268 50.036 34.03 36.954 19.466 53.811 51 51 36 36 22 51 1 1 1 1 1 1 4324.1 7450 3007 7384 11678 15165 15165 1 GPPLWEEDPGAK Unmodified 1294.6194 0.61936665 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 4.5 0.5 1 1 55.366 55.366 3 5.2779E-05 16133 TMT1-4 101.95 57.766 215.85 159.86 195.71 127.5 155.28 181.05 203 167 196 130 160 174 2 2 2 2 2 2 19059 7451 1780 7385 11679;11680 15166;15167 15167 2 GPPPSYGGSSR Unmodified 1060.4938 0.49377221 1056 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 0 4 0 1 28.79 28.79 2 0.0011254 5916 TMT1-3 99.855 73.471 15.677 60.335 19.108 22.371 28.529 22.638 15 58 22 22 29 22 1 1 1 1 1 1 4160.4 7452 1056 7386 11681 15168 15168 1 GPPQEEEEEEDEEEEATKEDAEAPGIR Unmodified 3041.2745 0.27452228 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 1 2 0 1 49.135 49.135 4 2.6968E-11 14577 TMT1-1 82.849 80.944 30.732 44.288 27.255 29.429 34.214 60.852 29 44 29 29 36 58 1 1 1 1 1 1 7834.5 7453 1257 7387 11682 15169 15169 1 GPPSSVPK Unmodified 767.41775 0.41775372 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 6 0 1 35.798 35.798 2 0.0063529 8515 TMT1-5 106.36 44.357 76.98 194.88 61.528 120.73 127.36 120.02 73 189 73 116 131 116 1 1 1 1 1 1 8441.2 7454 356 7388 11683 15170 15170 1 GPPTNVEPFFINLALFDVK Unmodified 2117.1197 0.11972779 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 8 0 1 94.461 94.461 3 0.00013515 30672 TMT1-7 65.25 50.48 15.887 14.511 22.578 6.188 6.2384 23.274 15 15 22 7 7 22 1 1 1 1 1 1 2397.3 7455 1961 7389 11684 15171 15171 1 GPPYAHK Unmodified 768.39187 0.39187332 2615 Q9H0U3;Q13454-2;Q13454 MAGT1;TUSC3 Magnesium transporter protein 1;Tumor suppressor candidate 3 yes no 0 0 0 0 0 6 0 1 29.511 29.511 3 0.014635 6098 TMT1-5 74.335 29.023 177.22 193.79 167.56 183.73 218.89 233.6 167 196 174 181 225 225 2 2 2 2 2 2 6173.4 7456 2615 7390 11685 15172;15173 15173 2 GPQILHR Unmodified 819.47152 0.47152062 2132 Q86YW5;Q86YW5-2 TREML1 Trem-like transcript 1 protein yes no 0 0 0 0 0 4.67 2.62 1 1 1 30.314 30.314 3 0.0014411 6301 TMT1-5 127.95 89.71 197.55 333.81 238.59 244.45 252.38 304.07 187 330 250 241 262 292 4 4 4 4 4 4 41002 7457 2132 7391 11686;11687;11688 15174;15175;15176;15177 15175 4 GPQLFHMDPSGTFVQCDAR Unmodified 2161.9673 0.96734302 924 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 0 0 0 7 0 1 58.859 58.859 3 7.5047E-06 17016 TMT1-6 77.899 68.493 46.703 50.4 42.763 35.59 64.295 59.993 44 51 44 36 65 58 1 1 1 1 1 1 11551 7458 924 7392 11689 15178 15178 1 GPQQIHLK Unmodified 919.52395 0.52395013 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 0 7 0 1 38.205 38.205 3 0.010142 8723 TMT1-6 73.931 24.118 232.21 282.71 227.59 216.08 342.81 267.38 219 284 236 216 346 260 1 1 1 1 1 1 41634 7459 2737 7393 11690 15179 15179 1 GPQVALK Unmodified 711.42792 0.42792448 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 42.268 42.268 2 0.003409 10471 TMT1-6 86.866 26.572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7460 1632 7394 11691 15180 15180 1 GPQVDVK Unmodified 741.4021 0.40210366 1632 Q09666;Q8IVF2-3;Q8IVF2 AHNAK;AHNAK2 Neuroblast differentiation-associated protein AHNAK;Protein AHNAK2 yes no 0 0 0 0 0 5 0 1 37.967 37.967 2 0.046598 9231 TMT1-4 83.265 57.528 138.71 202.18 139.61 99.802 178.8 172.92 131 201 145 102 181 167 1 1 1 1 1 1 11054 7461 1632 7395 11692 15181 15181 1 GPQVSGELK Unmodified 913.4869 0.48689592 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 40.838 40.838 2 0.022214 10380 TMT1-4 77.14 31.011 84.304 204.63 84.798 94.438 172.78 142.18 80 199 94 94 174 138 1 1 1 1 1 1 10289 7462 1632 7396 11693 15182 15182 1 GPSAAFAPAAAEPK Unmodified 1283.651 0.65100113 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 6 0 2 47.714 47.714 2;3 8.1559E-14 13249 TMT1-5 130.15 88.33 1061.7 1730.7 1342 1257.1 1374.2 2071.5 1005 1715 1393 1247 1437 1980 2 2 2 2 2 2 68935 7463 673 7397 11694;11695 15183;15184 15184 2 GPSADGALGVSISAPGGAIASVPNWTLR Unmodified 2620.3609 0.36091413 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 8 0 1 76.149 76.149 4 1.2628E-05 23890 TMT1-7 57.009 43.584 23.189 52.27 25.738 53.582 33.36 53.414 22 51 29 51 36 51 1 1 1 1 1 1 10495 7464 934 7398 11696 15185 15185 1 GPSFPEPLREEQDLER Unmodified 1897.917 0.91700524 503 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 0 1 3 0.816 1 1 1 52.161 52.161 3 1.9495E-11 16026 TMT1-2 122.75 90.918 261.24 417.08 283.39 261.02 391.64 430.15 247 413 297 261 400 414 4 4 4 4 4 4 57521 7465 503 7399 11697;11698;11699 15186;15187;15188;15189 15187 4 GPSGLLTYTGK Unmodified 1092.5815 0.58152458 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 8 0 1 55.076 55.076 2 0.00024189 15588 TMT1-7 106.29 77.892 153.56 169.36 196.93 143.1 193.75 227.93 145 172 198 145 199 219 1 1 1 1 1 1 26276 7466 2867 7400 11700 15190 15190 1 GPSGLLVYQGK Unmodified 1117.6132 0.61315906 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 8.5 0.5 1 1 54.592 54.592 3 0.00021396 15463 TMT1-7 99.973 69.145 613.08 1292.1 1001.4 824.46 992.58 1244.5 583 1269 1034 826 1026 1194 2 2 2 2 2 2 153180 7467 388 7401 11701;11702 15191;15192;15193 15192 3 GPSLDIDTPDVNIEGPEGK Unmodified 1951.9375 0.93746591 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3.67 0.471 1 2 64.502 64.502 3;4 1.0099E-15 21022 TMT1-2 104.88 87.336 107.92 183.61 101.46 110.43 141.17 158 102 181 109 109 145 152 2 2 2 2 2 2 21536 7468 1632 7402 11703;11704;11705 15194;15195;15196 15194 3 GPSLGWLFAK Unmodified 1074.5862 0.58621603 214 O60229-6;O60229-4 KALRN Kalirin yes no 0 0 0 0 0 9 0 1 75.159 75.159 2 0.0032854 21690 TMT1-8 96.331 53.085 68.756 86.378 92.948 72.516 92.154 82.65 65 87 94 73 94 80 1 1 1 1 1 1 9139.8 7469 214 7403 11706 15197 15197 1 GPSLQGDLAVSGDIK Unmodified 1455.7569 0.75692277 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 2 57.611 57.611 2;3 1.9483E-10 16951 TMT1-4 126.95 99.327 92.167 147.9 73.622 80.795 120.01 143.68 87 146 80 80 123 138 2 2 2 2 2 2 17840 7470 1632 7404 11707;11708 15198;15199 15198 2 GPSSVEDIK Unmodified 930.46583 0.46582612 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 4 0 1 42.913 42.913 2 0.00012351 11444 TMT1-3 149.57 114.08 661.6 1004 666.23 716.57 875.9 1192.4 625 996 704 707 908 1142 2 2 2 2 2 2 160180 7471 517 7405 11709 15200;15201 15200 2 GPSVFPLAPCSR Unmodified 1286.6441 0.64414162 421;422 P01860;P01859 IGHG3;IGHG2 Ig gamma-3 chain C region;Ig gamma-2 chain C region no no 0 0 0 0 0 8.5 0.5 1 1 56.237 56.237 2 8.2745E-07 14173 TMT1-8 119.34 76.167 84.265 122.5 160.92 99.246 140.84 182.53 80 123 160 102 145 175 2 2 2 2 2 2 21372 7472 422;421 7406 11710;11711 15202;15203 15203 2 GPSVFPLAPSSK Unmodified 1185.6394 0.63937381 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region yes no 0 0 0 0 0 9 0 1 58.319 58.319 3 0.00016909 15117 TMT1-8 91.123 51.467 252.8 501.34 368.69 273.72 317.37 413.08 240 493 381 276 329 396 2 2 2 2 2 2 64971 7473 420 7407 11712 15204;15205 15205 2 GPSWDPFR Unmodified 960.44537 0.44536545 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 7 0 1 58.119 58.119 2 0.0044445 16765 TMT1-6 125.01 81.193 474.67 380.8 510.52 481.85 715.24 549.9 447 396 515 481 723 535 1 1 1 1 1 1 84149 7474 476 7408 11713 15206 15206 1 GPSWDPFRDWYPHSR Unmodified 1901.8598 0.85976513 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 1 8.5 0.5 1 1 60.914 60.914 4 1.3634E-07 17956 TMT1-7 107.13 83.319 369.45 560.48 370.23 413.49 436.16 544.01 349 556 392 406 453 522 3 3 3 3 3 3 74803 7475 476 7409 11714;11715 15207;15208;15209 15208 3 GPSYGLSAEVK Unmodified 1106.5608 0.56078914 2463 Q99439;Q99439-2;Q15417-3;Q15417 CNN2;CNN3 Calponin-2;Calponin-3 yes no 0 0 0 0 0 5.5 0.5 2 2 47.745 47.745 2;3 1.1029E-06 13144 TMT1-5 141.95 107.87 1251.5 1673.3 1401.8 1137.8 1369.6 1757.1 1182 1674 1441 1141 1417 1685 4 4 4 4 4 4 301350 7476 2463 7410 11716;11717;11718;11719 15210;15211;15212;15213 15212 4 GPTEADELMK Unmodified 1089.5012 0.50122535 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 3 0 1 48.943 48.943 2 0.00046383 14810 TMT1-2 116.52 41.879 108.26 130.61 88.004 119.45 111.16 136.47 102 131 94 116 116 131 1 1 1 1 1 1 13452 7477 655 7411 11720 15214 15214 1 GPTEQLVSPEPEVHDIER Unmodified 2030.9909 0.99089846 1031 P35813-3;P35813;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 2 0 1 48.881 48.881 3 5.2723E-06 14469 TMT1-1 84.208 79.306 23.256 28.712 34.421 60.41 49.558 29.5 22 29 36 58 51 29 1 1 1 1 1 1 10530 7478 1031 7412 11721 15215 15215 1 GPTEQLVSPEPEVYEILR Unmodified 2055.0524 0.052436086 295 O75688-5;O75688-4;O75688-2;O75688 PPM1B Protein phosphatase 1B yes no 0 0 0 0 0 4 0 2 71.195 71.195 2;3 0.00031676 22575 TMT1-3 53.909 43.275 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7479 295 7413 11722;11723 15216;15217 15216 2 GPVEGYEENEEFLR Unmodified 1666.7475 0.74748029 2875 Q9UI30;Q9UI30-2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 0 0 0 0 0 2 0 1 55.469 55.469 2 2.277E-08 17073 TMT1-1 103.91 92.316 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7480 2875 7414 11724 15218 15218 1 GPVPAKPTVLFEK Unmodified 1381.7969 0.79693709 2003 Q66K74-2;Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 0 1 9 0 1 56.339 56.339 3 0.026983 14299 TMT1-8 45.28 29.39 108.27 145.75 73.659 81.053 106.15 120.63 102 145 80 80 109 116 1 1 1 1 1 1 8397.9 7481 2003 7415 11725 15219 15219 1 GPVSVGVDAR Unmodified 955.50869 0.50869399 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 0 4.5 0.5 1 1 38.955 38.955 2 5.3694E-05 9593 TMT1-4 111.39 66.431 129.66 231.69 192.57 135.4 210.14 217.86 123 229 197 138 214 210 1 1 1 1 1 1 47200 7482 889 7416 11726;11727 15220;15221 15221 2 GPVTDVAYSHDGAFLAVCDASK Unmodified 2279.0528 0.052846792 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 5 0 2 59.409 59.409 3;4 4.5426E-23 17613 TMT1-4 123.55 101.54 322.77 450.79 373.63 296 337.99 392.24 305 450 384 297 349 377 3 3 3 3 3 3 253800 7483 250 7417 11728;11729 15222;15223;15224 15222 3 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR Unmodified 3268.6809 0.68085128 1502 P78347-2;P78347-4;P78347-3;P78347 GTF2I General transcription factor II-I yes no 0 0 0 0 0 7 0 1 86.404 86.404 4 1.1999E-08 27778 TMT1-6 69.47 60.889 26.692 13.986 10.435 11.069 17.678 18.684 25 15 11 11 18 18 1 1 1 1 1 1 5204.7 7484 1502 7418 11730 15225 15225 1 GPVVLAEDFLDIMGQPINPQCR Unmodified 2468.2192 0.21920061 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 6.5 0.5 1 1 98.29 98.29 3 9.2425E-07 31956 TMT1-6 77.137 68.04 30.929 44.276 27.161 7.2451 29.294 46.277 29 44 28 7 29 44 2 4 4 1 3 3 4541.4 7485 828 7419 11731;11732 15226;15227;15228;15229;15230 15230 5 GPVVPAFALWDGELLTHSGLEVPEGL Unmodified 2702.3956 0.3955683 2276 Q8WW59 SPRYD4 SPRY domain-containing protein 4 yes yes 0 0 0 0 0 7 0 1 97.776 97.776 3 0.00098568 31726 TMT1-6 34.65 30.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7486 2276 7420 11733 15231 15231 1 GPVYIGELPQDFLR Unmodified 1602.8406 0.84059282 2612 Q9H0E2 TOLLIP Toll-interacting protein yes yes 0 0 0 0 0 6 0 1 74.268 74.268 2 1.894E-05 23672 TMT1-5 102.53 90.665 37.935 81.775 47.104 66.898 71.231 59.795 36 80 51 65 73 58 1 1 1 1 1 1 18759 7487 2612 7421 11734 15232 15232 1 GPYDFDQIK Unmodified 1081.508 0.50802529 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 5 0 1 55.692 55.692 2 0.00058906 16252 TMT1-4 133.57 85.75 222.33 297.86 252.56 195.03 220.63 319.9 210 298 259 196 230 306 1 1 1 1 1 1 25269 7488 1960 7422 11735 15233 15233 1 GQAFVIFK Unmodified 908.51199 0.51198846 571;580 P08579;P09012 SNRPB2;SNRPA U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A no no 0 0 0 0 0 9 0 1 62.078 62.078 2 0.0052987 16509 TMT1-8 126.67 73.501 169.81 178.41 162.72 143.96 256.8 279.43 160 181 167 145 261 269 2 2 2 2 2 2 19840 7489 571;580 7423 11736 15234;15235 15234 2 GQAQAIEFLK Unmodified 1103.5975 0.597509 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 6 0 1 57.115 57.115 2 0.0034337 16964 TMT1-5 96.171 75.301 46.315 95.728 69.697 74.347 68.507 129.16 44 94 73 73 73 123 1 1 1 1 1 1 6831.1 7490 2851 7424 11737 15236 15236 1 GQATDIAIQAEEIMK Unmodified 1616.808 0.80797206 1903 Q16740 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial yes yes 0 0 0 0 0 4 0 1 67.931 67.931 3 0.00082944 21343 TMT1-3 70.41 41.434 54.107 73.332 41.346 35.69 63.484 83.468 51 73 44 36 65 80 1 1 1 1 1 1 7217.4 7491 1903 7425 11738 15237 15237 1 GQCDLELINVCNENSLFK Unmodified 2151.9929 0.99288907 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5.67 0.471 1 2 71.802 71.802 3;4 2.7722E-14 22738 TMT1-5 122.29 106.35 153.57 217.96 154.16 114.79 149.6 150.3 145 217 160 116 153 145 3 3 3 3 3 3 35769 7492 1540 7426 11739;11740;11741 15238;15239;15240 15240 3 GQCGENLAWASYDQTGK Unmodified 1883.8108 0.81082561 2652 Q9H4G4 GLIPR2 Golgi-associated plant pathogenesis-related protein 1 yes yes 0 0 0 0 0 5 0 1 54.455 54.455 3 1.0687E-18 15761 TMT1-4 110.74 101.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7493 2652 7427 11742 15241 15241 1 GQCHLQFQLIHK Unmodified 1507.7718 0.77180175 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8.5 0.5 1 1 45.516 45.516 4 1.2109E-07 11799 TMT1-7 117.09 104.46 469.18 688.59 451.65 490.89 595.59 519.2 443 684 478 484 608 503 2 2 2 2 2 2 44097 7494 2066 7428 11743;11744 15242;15243 15242 2 GQDDFLGNVVLR Unmodified 1331.6834 0.68336389 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5 0 1 63.217 63.217 2 0.00057367 19180 TMT1-4 73.655 66.009 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7495 2066 7429 11745 15244 15244 1 GQDDLVVCLHR Unmodified 1310.6401 0.64011887 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 4 0 1 43.578 43.578 3 2.2365E-09 11737 TMT1-3 126.66 86.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7496 20 7430 11746 15245 15245 1 GQDEASAGGIWGFIK Unmodified 1534.7416 0.74160705 2437 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5;Q96M27-4 PRRC1 Protein PRRC1 yes no 0 0 0 0 0 7 0 2 71.603 71.603 2;3 5.4436E-05 22059 TMT1-6 93.494 67.835 62.029 141.06 95.225 118.56 135.83 119.78 59 138 101 116 139 116 2 2 2 2 2 2 23126 7497 2437 7431 11747;11748 15246;15247 15247 2 GQDHCGIESEVVAGIPR Unmodified 1822.8632 0.86319553 544 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 0 3 0 1 49.229 49.229 3 5.5047E-30 14907 TMT1-2 167.41 134.98 76.991 139.86 106.36 62.822 100.17 105.87 73 138 109 65 102 102 2 2 2 2 2 2 36847 7498 544 7432 11749 15248;15249 15248 2 GQDLLSTVSIR Unmodified 1187.651 0.65100113 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 7 0.816 1 1 1 57.4 57.4 2 1.1032E-11 17088 TMT1-5 172.8 97.884 636.83 746.23 719 586.3 661.24 886.17 601 753 733 587 687 849 4 4 4 4 4 4 231480 7499 535 7433 11750;11751;11752 15250;15251;15252;15253;15254 15252 5 GQDPLADR Unmodified 870.41954 0.41954463 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 2 0 1 33.994 33.994 2 0.017616 8573 TMT1-1 90.696 44.814 54.083 49.521 65.543 34.63 43.158 37.144 51 51 65 36 44 36 1 1 1 1 1 1 3241.6 7500 1796 7434 11753 15255 15255 1 GQEGEYAVPFDAVAR Unmodified 1607.758 0.7579854 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 3.5 0.5 1 1 56.797 56.797 3 0.0011232 17939 TMT1-2 66.826 47.432 138.85 174.49 140.57 115.61 148.8 172.71 131 175 145 116 153 166 3 3 3 3 3 3 31035 7501 224 7435 11754;11755 15256;15257;15258 15256 3 GQELAFPLSPDWQVDYESYTWR Unmodified 2686.234 0.23398228 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 6 0 1 85.104 85.104 3 9.4467E-05 27891 TMT1-5 62.082 50.116 23.076 74.62 25.859 45.068 20.726 38.851 22 72 30 43 22 37 2 2 2 2 1 2 21458 7502 904 7436 11756 15259;15260 15259 2 GQELIYAGMPITEVFK Unmodified 1794.9226 0.92260789 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 7 0 1 79.003 79.003 3 0.01176 24937 TMT1-6 50.053 23.563 30.741 51.87 19.199 30.028 27.92 30.117 29 51 22 29 29 29 1 1 1 1 1 1 3315.7 7503 1283 7437 11757 15261 15261 1 GQESEYGNITYPPAMK Unmodified 1783.8087 0.80870034 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 54.914 54.914 3 1.0201E-06 15836 TMT1-4 96.993 88.392 161.56 204.76 84.023 102.94 188.35 134.27 152 204 94 102 189 131 2 2 2 2 2 2 10833 7504 936 7438 11758 15262;15263 15262 2 GQETSTNPIASIFAWTR Unmodified 1877.9272 0.92717599 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 8.5 0.5 1 1 79.612 79.612 3 1.819E-10 23341 TMT1-8 101.5 76.182 100.77 114.98 98.737 94.74 112.59 127.91 95 116 102 94 116 123 3 3 3 3 3 3 22611 7505 307 7439 11759;11760 15264;15265;15266 15266 3 GQEVETSVTYYR Unmodified 1430.6678 0.66777341 157 O43169 CYB5B Cytochrome b5 type B yes yes 0 0 0 0 0 3 0 1 43.234 43.234 2 5.636E-11 12575 TMT1-2 166.11 118.14 61.379 87.262 69.802 81.677 85.21 59.396 58 87 73 80 87 58 1 1 1 1 1 1 17350 7506 157 7440 11761 15267 15267 1 GQFETYLR Unmodified 1012.4978 0.49779495 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 5 0 1 49.324 49.324 2 0.0029622 13722 TMT1-4 133.98 70.676 137.94 320.9 169.35 171.11 186.99 204.67 131 313 182 169 193 197 1 1 1 1 1 1 34872 7507 1714 7441 11762 15268 15268 1 GQFSTDELVAEVEK Unmodified 1550.7464 0.74641766 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 4 0 1 65.678 65.678 3 2.3301E-10 20456 TMT1-3 121.31 95.782 124.02 144.75 133.41 148.01 192.55 165.07 117 146 138 146 196 160 2 2 2 2 2 2 22895 7508 1540 7442 11763 15269;15270 15270 2 GQFSTDELVAEVEKR Unmodified 1706.8475 0.84752869 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 4.33 0.471 2 1 60.002 60.002 3;4 8.4854E-20 18199 TMT1-3 166.3 133.78 660.5 780.58 860.23 646.09 812.13 920.24 624 789 868 652 835 885 4 4 4 4 4 4 141580 7509 1540 7443 11764;11765;11766 15271;15272;15273;15274 15271 4 GQGSSPVAMQK Oxidation (M) 1104.5234 0.52335778 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 5.5 0.5 1 1 33.063 33.063 3 0.0091483 6333 TMT1-4 73.666 45.653 322.41 365.44 325.15 284.83 329.57 408.47 304 369 334 284 341 392 4 4 4 4 4 4 14420 7510 776 7444 11767;11768 15275;15276;15277;15278 15275 139 4 GQGSSPVAMQK Unmodified 1088.5284 0.52844316 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6.5 0.5 1 1 37.65 37.65 2;3 3.922E-08 9232 TMT1-5 152.69 132.93 746.95 747.09 605.48 619.3 719.13 922.89 703 759 630 612 745 885 2 2 2 2 2 2 83710 7511 776 7444 11769;11770 15279;15280;15281 15279 3 GQGVYLGMPGCLPVYDALAGEFIR Unmodified 2582.2662 0.26615081 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 7.5 0.5 1 1 89.359 89.359 3 3.3123E-13 28825 TMT1-6 97.5 87.936 51.011 51.23 39.386 12.636 52.127 49.062 48 52 40 14 52 47 3 3 3 2 3 2 23171 7512 944 7445 11771;11772 15282;15283;15284 15282 3 GQGVYLGMPGCLPVYDALAGEFIR Oxidation (M) 2598.2611 0.26106543 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 1 0 0 7 0 1 84.33 84.33 3 6.1381E-05 27004 TMT1-6 50.945 42.953 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7513 944 7445 11773 15285 15285 174 1 GQHVPGSPFQFTVGPLGEGGAHK Unmodified 2303.1447 0.14471376 831;1771 P21333-2;P21333;Q14315-2;Q14315 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 0 8 0 2 54.863 54.863 4;5 3.4735E-18 15583 TMT1-7 113.73 95.91 706.32 887.53 642.36 554.28 747.16 741.94 666 889 669 555 763 716 2 2 2 2 2 2 249130 7514 831;1771 7446 11774;11775 15286;15287 15287 2 GQIQEAIALINSLHPELLDTNR Unmodified 2444.3023 0.30233662 2767 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog yes yes 0 0 0 0 0 8 0 1 85.518 85.518 3 0.0016702 27463 TMT1-7 49.593 40.177 15.932 14.635 14.983 6.4834 14.601 23.035 15 15 15 7 15 22 1 1 1 1 1 1 2555.5 7515 2767 7447 11776 15288 15288 1 GQISETLK Unmodified 874.476 0.47599688 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5.5 0.5 1 1 42.479 42.479 2 0.0015304 11000 TMT1-4 141.48 115.65 179.79 326.86 344.37 285.8 391.61 367.26 171 324 349 287 399 355 1 1 1 1 1 1 43735 7516 787 7448 11777;11778 15289;15290 15289 2 GQLEQITGK Unmodified 972.52401 0.52400971 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 0 5.5 0.5 1 1 47.264 47.264 2 0.00040662 12953 TMT1-4 138.66 96.55 255.47 329.79 245.3 335.54 269.29 481.61 241 330 260 325 288 459 2 2 2 2 2 2 30588 7517 1970 7449 11779;11780 15291;15292 15291 2 GQLESIVENIR Unmodified 1256.6725 0.67246486 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 5 0 1 61.403 61.403 2 0.012809 18449 TMT1-4 76.655 57.561 77.288 85.645 102.36 55.679 85.856 75.368 73 87 102 58 87 73 1 1 1 1 1 1 18833 7518 765 7450 11781 15293 15293 1 GQLGHGDTK Unmodified 911.44609 0.44609374 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 5 0 1 26.142 26.142 3 0.0027052 4557 TMT1-4 83.499 58.362 54.296 33.924 42.977 52.12 56.462 52.755 51 36 44 51 58 51 1 1 1 1 1 1 3348.9 7519 2822 7451 11782 15294 15294 1 GQLHVDGQK Unmodified 980.50394 0.50394297 124 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 0 5 0 1 31.785 31.785 3 0.00038945 6778 TMT1-4 78.939 30.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7520 124 7452 11783 15295 15295 1 GQLQDLDSR Unmodified 1030.5043 0.5043369 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 3 0 1 38.878 38.878 2 0.010545 10880 TMT1-2 88.181 38.856 77.618 55.263 72.695 58.014 55.678 67.701 73 58 73 58 58 65 1 1 1 1 1 1 6138.4 7521 2131 7453 11784 15296 15296 1 GQLTTDQVFPYPSVLNEEQTQFLK Unmodified 2781.3861 0.38612583 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 79.232 79.232 4 1.8762E-09 25567 TMT1-5 79.762 64.063 76.356 78.555 84.742 96.392 69.069 83.309 72 80 87 94 73 80 2 2 2 2 2 2 24418 7522 1194 7454 11785;11786 15297;15298 15297 2 GQLVPLETVLDMLR Unmodified 1582.8753 0.87526376 398 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 0 8 0 2 93.578 93.578 2;3 8.1077E-06 30421 TMT1-7 100.11 71.479 46.546 66.15 55.928 83.195 48.495 60.444 44 66 59 80 52 58 3 3 3 3 3 3 26502 7523 398 7455 11787;11788 15299;15300;15301 15300 3 GQLVVNPEALK Unmodified 1166.6659 0.66592292 994 P32456 GBP2 Interferon-induced guanylate-binding protein 2 yes yes 0 0 0 0 0 6 0 1 57.149 57.149 3 0.00027261 16946 TMT1-5 98.353 77.576 61.25 94.46 85.285 64.498 77.865 83.058 58 94 87 65 80 80 1 1 1 1 1 1 8421.1 7524 994 7456 11789 15302 15302 1 GQNDLMGTAEDFADQFLR Unmodified 2026.9055 0.90545427 138 O15260;O15260-2;O15260-3 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 5 0 1 87.45 87.45 3 3.9326E-09 28626 TMT1-4 103.99 87.85 23.277 21.214 37.369 28.629 44.709 0 22 22 37 29 44 0 1 1 1 1 1 0 9325.9 7525 138 7457 11790 15303 15303 1 GQNVLLTENAEVK Unmodified 1413.7464 0.74635808 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 0 5 0 1 51.104 51.104 3 0.00028269 14423 TMT1-4 85.163 59.224 146.09 179.71 181.11 120.75 153.98 227.99 138 181 183 123 160 218 1 1 1 1 1 1 14129 7526 2892 7458 11791 15304 15304 1 GQPAIIDGELYNEVK Unmodified 1644.8359 0.83590137 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 4 0 1 61.808 61.808 3 1.6791E-06 18929 TMT1-3 102.78 64.748 77.14 140.28 81.037 96.353 82.923 106.37 73 138 87 94 87 102 1 1 1 1 1 1 17579 7527 2956 7459 11792 15305 15305 1 GQPCSQNYR Unmodified 1108.472 0.47199091 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 3 0 1 24.174 24.174 2 0.016869 5018 TMT1-2 79.489 46.739 23.3 36.39 20.537 21.694 59.971 21.741 22 36 22 22 59 22 1 1 1 1 1 1 4499.5 7528 2633 7460 11793 15306 15306 1 GQPDEELKPK Unmodified 1139.5823 0.58225287 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 4 0 1 38.129 38.129 3 0.0032308 9573 TMT1-3 85.288 57.879 527.86 808.99 586.83 493.61 661.75 720.92 499 803 610 495 678 694 1 1 1 1 1 1 40733 7529 1297 7461 11794 15307 15307 1 GQPDLPEGSLPIATVEELTDTFYYR Unmodified 2810.3651 0.36505603 1982 Q5TEJ8-3;Q5TEJ8-5;Q5TEJ8;Q5TEJ8-6 THEMIS2 Protein THEMIS2 yes no 0 0 0 0 0 5 0 1 92.955 92.955 3 0.0012759 30689 TMT1-4 45.546 36.674 7.511 0 0 0 15.449 7.0212 7 0 0 0 15 7 1 0 0 0 1 1 2824.3 7530 1982 7462 11795 15308 15308 1 GQPFYAVEK Unmodified 1037.5182 0.51819605 2342 Q93052 LPP Lipoma-preferred partner yes yes 0 0 0 0 0 6 0 1 49.867 49.867 2 0.00017402 14133 TMT1-5 147.2 99.597 76.869 147.08 120.71 71.028 83.318 128.74 73 145 123 73 87 123 1 1 1 1 1 1 13936 7531 2342 7463 11796 15309 15309 1 GQPIYIQFSNHK Unmodified 1430.7306 0.73064844 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 8.5 0.5 1 1 49.229 49.229 3 2.6512E-19 13268 TMT1-7 187.51 142.23 204.01 294.58 268.27 213.26 247.45 245.58 193 294 274 214 254 237 1 1 1 1 1 1 64383 7532 901 7464 11797;11798 15310;15311 15310 2 GQPLGPAGVQVSLR Unmodified 1377.7728 0.7728476 1498 Q5JPE7-2;Q15155;P69849;Q5JPE7 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 0 7 0 1 52.372 52.372 2 0.0071024 14493 TMT1-6 68.277 39.534 38.29 43.906 19.634 30.144 20.329 37.796 36 44 22 29 22 36 1 1 1 1 1 1 5022.6 7533 1498 7465 11799 15312 15312 1 GQQELLYVVPFVAK Unmodified 1589.8817 0.88172935 10 A5YKK6-2;A5YKK6;A5YKK6-3;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 0 8 0 1 76.186 76.186 3 0.00076256 23887 TMT1-7 73.91 46.261 30.621 59.092 33.226 45.482 33.476 60.873 29 58 36 44 36 58 1 1 1 1 1 1 5335.4 7534 10 7466 11800 15313 15313 1 GQQLVEAAEIDCQDLEER Unmodified 2101.9586 0.95861206 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 2 0 1 61.868 61.868 3 8.6815E-25 19562 TMT1-1 143.99 134.59 15.857 21.981 21.401 22.534 12.559 30.556 15 22 22 22 14 29 1 1 1 1 1 1 8583.3 7535 651 7467 11801 15314 15314 1 GQQQVFK Unmodified 833.43955 0.43955179 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 6.5 0.5 1 1 37.493 37.493 2 5.2006E-05 8685 TMT1-6 126.54 67.335 137.76 296.65 220.5 172.91 219.35 234.66 131 291 228 174 225 226 1 1 1 1 1 1 18597 7536 1076 7468 11802;11803 15315;15316 15316 2 GQQVFLK Unmodified 818.46504 0.46503826 832 P21399;O00408-5;O00408-4;O00408-3;O00408 ACO1;PDE2A Cytoplasmic aconitate hydratase;cGMP-dependent 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 8 0 1 46.607 46.607 2 4.6306E-05 12230 TMT1-7 161.1 77.252 122.77 150.82 157.26 138.95 133.58 158.22 116 152 160 138 139 152 1 1 1 1 1 1 11348 7537 832 7469 11804 15317 15317 1 GQSFYVQIDFSR Unmodified 1445.6939 0.69392858 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 7 0 1 63.84 63.84 2 0.00070567 18991 TMT1-6 96.067 68.764 106.56 182.9 149.58 100.03 135.35 128.32 101 181 153 102 138 124 2 2 2 2 2 2 14790 7538 393 7470 11805 15318;15319 15318 2 GQSFYVQIDFSRPYDPR Unmodified 2073.9908 0.99083888 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 7 0 1 62.462 62.462 3 4.9191E-07 18415 TMT1-6 92.211 68.882 191.87 234.91 195.01 214.94 215.88 279.53 181 236 203 211 225 268 2 2 2 2 2 2 67472 7539 393 7471 11806 15320;15321 15320 2 GQSSWGTGESFR Unmodified 1297.5687 0.56872807 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 5 0 1 42.453 42.453 2 3.7683E-08 11032 TMT1-4 134.18 113.48 30.497 74.936 40.623 52.413 48.313 76.439 29 73 44 51 51 73 1 1 1 1 1 1 9945.7 7540 1577 7472 11807 15322 15322 1 GQTHTLEDFQR Unmodified 1330.6266 0.6265773 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 4 0 1 34.343 34.343 3 0.017002 8057 TMT1-3 54.772 33.8 68.367 140.34 112.59 93.347 142.73 135.57 65 138 116 94 145 131 1 1 1 1 1 1 18225 7541 2485 7473 11808 15323 15323 1 GQTIEVR Unmodified 801.43447 0.43446642 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 3 0 1 31.585 31.585 2 0.021823 7943 TMT1-2 96.19 16.739 217.31 397.58 290.16 212.97 309.49 328.02 206 392 300 216 316 316 1 1 1 1 1 1 44612 7542 740 7474 11809 15324 15324 1 GQTILLDQSTPILK Unmodified 1525.8716 0.87155859 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 7 0 1 64.825 64.825 3 0.0066214 19391 TMT1-6 57.148 33.912 37.75 81.26 78.623 64.451 101.45 66.395 36 80 80 65 102 65 1 1 1 1 1 1 8167.2 7543 2121 7475 11810 15325 15325 1 GQTLVVQFTVK Unmodified 1218.6972 0.69722304 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 8.5 0.5 1 1 61.678 61.678 2;3 2.7614E-29 16437 TMT1-8 199.7 126.44 471.82 911.61 720.49 421.82 742.68 866.79 448 898 736 438 757 833 2 2 2 2 2 2 264090 7544 918 7476 11811;11812 15326;15327;15328 15328 3 GQTSPHTPNEK Unmodified 1194.5629 0.56291441 1925 Q32P28-4;Q32P28;Q32P28-3 LEPRE1 Prolyl 3-hydroxylase 1 yes no 0 0 0 0 0 4 0 1 24.962 24.962 3 0.040257 4449 TMT1-3 45.915 27.551 15.862 29.551 14.086 6.5321 14.855 15.566 15 29 15 7 15 15 1 1 1 1 1 1 1185.3 7545 1925 7477 11813 15329 15329 1 GQVCEVLK Unmodified 931.4797 0.47970205 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 5 0 1 44.745 44.745 2 0.02722 11940 TMT1-4 83.783 6.5004 76.726 177.98 118.56 77.794 137.17 104.82 73 174 123 80 138 102 1 1 1 1 1 1 7626.7 7546 44 7478 11814 15330 15330 1 GQVCEVLKK Unmodified 1059.5747 0.57466507 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 1 7 0 1 43.324 43.324 3 0.020767 10877 TMT1-6 63.624 19.436 138.94 166.12 131.75 154.81 184.65 172.75 131 167 138 152 189 167 1 1 1 1 1 1 9479.7 7547 44 7479 11815 15331 15331 1 GQVCLPVISAENWKPATK Unmodified 1997.0404 0.040431612 1489 P68036;P68036-3;P68036-2;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 1 9 0 1 63.321 63.321 4 2.4431E-14 17076 TMT1-8 118.72 88.292 369.65 429.38 447.1 297.52 430.92 455.68 349 434 451 304 440 439 2 2 2 2 2 2 62879 7548 1489 7480 11816 15332;15333 15333 2 GQVCVMIHSGSR Unmodified 1329.6282 0.62817398 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 7 0 1 35.58 35.58 3 0.011753 7834 TMT1-6 57.106 38.795 54.177 49.781 49.624 51.585 63.816 52.545 51 51 51 51 65 51 1 1 1 1 1 1 2682.8 7549 3001 7481 11817 15334 15334 1 GQVFDVGPR Unmodified 973.49813 0.49812931 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 0 5 0 1 45.879 45.879 2 0.0014108 12422 TMT1-4 119.86 66.109 138.21 250.42 183.81 135.78 218.08 260.28 131 247 190 138 223 250 1 1 1 1 1 1 33017 7550 930 7482 11818 15335 15335 1 GQVGLVPK Unmodified 796.48069 0.48068833 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 0 0 0 0 7.5 0.5 1 1 44.737 44.737 2 0.022303 11478 TMT1-6 87.323 30.219 169.82 155.76 181.36 120.42 170.78 165.69 160 160 182 123 174 160 2 2 2 2 2 2 20511 7551 187 7483 11819;11820 15336;15337 15336 2 GQVLNSDELQELYEGLR Unmodified 1961.9694 0.96943474 88 O00764;O00764-2 PDXK Pyridoxal kinase yes no 0 0 0 0 0 4 0 1 74.197 74.197 3 1.2154E-07 23735 TMT1-3 99.021 86.504 46.75 50.531 34.762 20.712 67.089 29 44 51 36 22 66 29 1 1 1 1 1 1 11934 7552 88 7484 11821 15338 15338 1 GQVLVFLGQSEGLR Unmodified 1501.8253 0.8252771 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 8.4 0.49 3 2 68.132 68.132 2;3 1.6549E-112 20710 TMT1-7 274.49 235.47 2486.7 3056.3 2731.3 2127.4 2477.5 3078.3 2347 3073 2793 2138 2563 2954 7 7 7 7 7 7 2237700 7553 565 7485 11822;11823;11824;11825;11826 15339;15340;15341;15342;15343;15344;15345;15346 15339 8 GQVPPLVTTNFLVK Unmodified 1511.8712 0.87116466 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 9 0 1 70.74 70.74 3 5.9895E-05 19952 TMT1-8 81.619 53.445 77.038 139.99 98.384 71.65 120.98 127.67 73 138 102 73 123 123 1 1 1 1 1 1 12707 7554 1293 7486 11827 15347 15347 1 GQVQEVGWHDVAGWLGR Unmodified 1892.9282 0.92817905 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 7 0 1 64.124 64.124 3 0.00021385 19082 TMT1-6 73.809 62.955 199.92 241.47 279.15 138.13 197.84 237.4 189 244 278 145 203 228 1 1 1 1 1 1 30971 7555 765 7487 11828 15348 15348 1 GQVSEGGQLR Unmodified 1029.5203 0.52032131 2435 Q96L92-3;Q96L92 SNX27 Sorting nexin-27 yes no 0 0 0 0 0 3 0 1 29.377 29.377 2 0.00068492 7095 TMT1-2 109.88 87.386 23.218 44.795 27.27 29.266 42.855 53.143 22 44 29 29 44 51 1 1 1 1 1 1 4093.8 7556 2435 7488 11829 15349 15349 1 GQVVSLIR Unmodified 870.5287 0.52870115 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7.67 0.471 1 2 47.521 47.521 2 5.4063E-07 12454 TMT1-7 135 89.117 207.55 252.08 250.33 186.89 253.49 348.81 196 254 254 189 262 334 2 2 2 2 2 2 35496 7557 536 7489 11830;11831;11832 15350;15351;15352;15353 15352 4 GQYCYELDEK Unmodified 1303.5391 0.53906742 456 P04004 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes yes 0 0 0 0 0 3.5 0.5 1 1 48.084 48.084 2;3 0.00012952 14481 TMT1-2 110.39 84.95 92.261 108.22 91.557 71.669 141.6 197.43 87 109 94 73 145 189 1 1 1 1 1 1 19745 7558 456 7490 11833;11834 15354;15355 15354 2 GQYDVAIK Unmodified 892.46543 0.46543219 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 45.701 45.701 2 0.0053909 12303 TMT1-4 118.26 28.966 238.69 292.29 392.24 174.01 256.33 252.79 226 296 387 185 261 244 1 1 1 1 1 1 23546 7559 1601 7491 11835 15356 15356 1 GQYFGELALVTNKPR Unmodified 1691.8995 0.89950468 695;974 P13861-2;P13861;P31323 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit no no 0 0 0 0 1 8 0 1 60.033 60.033 3 9.6343E-28 17556 TMT1-7 186.42 158.27 207.53 300.6 212.2 248.95 271.03 364.3 196 299 224 244 282 349 1 1 1 1 1 1 39587 7560 695;974 7492 11836 15357 15357 1 GRDVIAQSQSGTGK Unmodified 1402.7165 0.71645494 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 1 6 0 1 31.995 31.995 3 1.1909E-11 7013 TMT1-5 109.64 73.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7561 1059 7493 11837 15358 15358 1 GRDWNVDLIPK Unmodified 1311.6935 0.69353465 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 1 7 0 1 55.35 55.35 3 2.0324E-05 15702 TMT1-6 115.33 97.19 338.01 442.81 343.67 321.77 457.31 477.31 319 443 357 321 467 460 2 2 2 2 2 2 98833 7562 1217;972 7494 11838 15359;15360 15360 2 GREEYEGPNK Unmodified 1177.5364 0.53636531 857 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 0 0 1 3 0 1 29.17 29.17 3 0.0015992 7014 TMT1-2 69.721 54.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7563 857 7495 11839 15361 15361 1 GRPGPIGVLLMK Unmodified 1236.7376 0.73764807 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 1 9 0 1 57.128 57.128 3 0.0068557 14599 TMT1-8 58.511 23.156 68.636 141.09 66.863 74.358 76.898 98.01 65 138 73 73 80 94 1 1 1 1 1 1 4941.8 7564 2852 7496 11840 15362 15362 1 GRPTSTNPIASIFAWTR Unmodified 1873.9799 0.97988027 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 9 0 1 67.293 67.293 3 6.5153E-08 18639 TMT1-8 84.144 33.791 107.77 183.2 126.38 85.877 89.415 144.56 102 181 131 87 94 138 2 2 2 2 2 2 22769 7565 1164 7497 11841 15363;15364 15364 2 GSAADSEESPAIEAIHLLR Unmodified 1964.9803 0.98033378 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 4 0.816 1 1 1 61.532 61.532 3 5.3261E-36 19824 TMT1-2 164.53 143 208.68 253.24 239.79 227.44 222.89 271.87 197 255 246 225 232 261 4 4 4 4 4 4 69953 7566 688 7498 11842;11843;11844 15365;15366;15367;15368;15369 15365 5 GSAGAPSVENVK Unmodified 1114.5619 0.56185177 1031 P35813-3;P35813;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 5 0 1 39.275 39.275 2 1.4498E-08 9784 TMT1-4 145.28 87.417 61.368 87.234 71.563 42.205 86.219 82.82 58 87 73 44 87 80 1 1 1 1 1 1 9320 7567 1031 7499 11845 15370 15370 1 GSAITGPVAK Unmodified 899.50763 0.50763136 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 7 0 1 41.496 41.496 2 3.2758E-06 10137 TMT1-6 155.84 110.53 238.63 318.94 198.78 230.51 363.99 331.8 225 318 212 228 369 321 2 2 2 2 2 2 29810 7568 1446 7500 11846 15371;15372 15371 2 GSAPPGPVPEGSIR Unmodified 1319.6834 0.68336389 1506 P78417;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 4.33 0.471 2 1 40.178 40.178 2;3 3.7947E-11 10412 TMT1-3 128.21 89.921 352.16 462.04 473.35 346.33 483.9 553.3 333 464 479 351 496 532 3 3 3 3 3 3 181840 7569 1506 7501 11847;11848;11849 15373;15374;15375;15376 15374 4 GSCSTEVEKETQEK Unmodified 1610.7094 0.70938023 266 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 0 0 0 0 1 3 0 1 34.799 34.799 3 2.9886E-07 9254 TMT1-2 109.6 90.767 77.585 62.726 71.91 65.586 62.366 76.038 73 65 73 65 65 73 1 1 1 1 1 1 7461.2 7570 266 7502 11850 15377 15377 1 GSDEPPVFLEIHYK Unmodified 1629.8039 0.80387296 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 5 0 2 60.759 60.759 3;4 2.1184E-07 18240 TMT1-4 107.61 85.395 214.21 384.12 280.49 230.1 359.36 314.88 203 379 291 232 364 305 2 2 2 2 2 2 45107 7571 932 7503 11851;11852 15378;15379 15379 2 GSDFDCELR Unmodified 1097.4448 0.44477311 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 2.5 0.5 1 1 42.819 42.819 2 0.00010925 12180 TMT1-1 150.24 118.31 213.68 539.31 419.02 336.06 388.45 483.54 204 527 432 337 402 464 2 2 2 2 2 2 91809 7572 1409;1410 7504 11853;11854 15380;15381 15380 2 GSDHSASLEPGELAELVR Unmodified 1865.9119 0.91191986 2722 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 0 3 0 1 57.723 57.723 3 3.1081E-14 18284 TMT1-2 121.41 112.59 184.54 224.05 173.58 201.35 134.81 251.99 174 225 182 196 146 240 3 3 3 3 3 3 19439 7573 2722 7505 11855 15382;15383;15384 15382 3 GSDSIAYDK Unmodified 954.42944 0.42944062 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 0 4 0 1 40.077 40.077 2 0.0013981 10352 TMT1-3 81.263 47.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7574 1023 7506 11856 15385 15385 1 GSDVIIMLVGNK Oxidation (M) 1260.6748 0.67477304 2733;810 P20340;P20340-2;P20340-4;Q9NRW1;Q9NRW1-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 1 0 0 8 0 1 67.111 67.111 3 0.0081952 20327 TMT1-7 69.451 46.711 30.436 58.578 64.733 43.307 49.282 60.422 29 58 65 44 51 58 1 1 1 1 1 1 6023.5 7575 810;2733 7507 11857 15386 15386 151 1 GSDVIIMLVGNK Unmodified 1244.6799 0.67985842 2733;810 P20340;P20340-2;P20340-4;Q9NRW1;Q9NRW1-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 0 8.33 0.471 2 1 73.12 73.12 2;3 1.6947E-08 22684 TMT1-7 143.61 90.139 261.8 325.8 267.76 224.51 290.22 325.38 247 327 276 225 298 313 3 3 3 3 3 3 112280 7576 810;2733 7507 11858;11859;11860 15387;15388;15389 15387 3 GSEAAQLLEAADFAAR Acetyl (N-term) 1660.8057 0.80566387 2179 Q8N4P3;Q8N4P3-2 HDDC3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 yes no 1 0 0 0 0 3 0 1 83.78 83.78 2 7.4832E-07 28331 TMT1-2 57.802 57.802 7.4147 7.3341 23.004 7.2451 0 0 7 7 22 7 0 0 1 1 2 1 0 0 3061.8 7577 2179 7508 11861 15390;15391 15391 2 GSELQLPFQACLK Unmodified 1489.7599 0.75989966 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 7 0 1 68.507 68.507 3 0.0019163 20845 TMT1-6 70.412 34.453 46.612 81.445 31.801 45.557 33.986 45.934 44 80 36 44 36 44 1 1 1 1 1 1 6567 7578 2028 7509 11862 15392 15392 1 GSELQNYFTK Unmodified 1185.5666 0.5666028 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 7 0 1 56.393 56.393 3 0.002559 16035 TMT1-6 79.659 52.561 115.34 182.86 116.63 110.11 110.53 167.41 109 181 123 109 116 160 1 1 1 1 1 1 9730 7579 1383 7510 11863 15393 15393 1 GSELWLGVDALGLNIYEQNDR Unmodified 2361.1601 0.16008906 894 P26038 MSN Moesin yes yes 0 0 0 0 0 5.5 0.5 1 1 86.106 86.106 3 5.8708E-08 28269 TMT1-5 89.831 63.965 53.715 79.798 101.71 56.51 101.82 66.385 51 80 101 59 102 65 3 3 3 3 3 3 15642 7580 894 7511 11864;11865 15394;15395;15396;15397 15395 4 GSEPVPEK Unmodified 841.41815 0.41814765 2265 Q8WU79-3;Q8WU79-2;Q8WU79 SMAP2 Stromal membrane-associated protein 2 yes no 0 0 0 0 0 3 0 1 35.6 35.6 2 0.0059993 9556 TMT1-2 111.17 76.062 68.867 102.87 60.462 75.173 53.826 98.668 65 102 65 73 58 94 1 1 1 1 1 1 7893.8 7581 2265 7512 11866 15398 15398 1 GSESGIFTNTK Unmodified 1139.5459 0.54586736 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.67 0.471 1 2 45.2 45.2 2;3 4.2235E-07 12182 TMT1-5 150.04 133.1 1303.3 1349.3 910.68 860.93 619.83 1968.3 1226 1365 958 848 695 1863 3 3 3 3 3 3 353450 7582 437 7513 11867;11868;11869 15399;15400;15401 15400 3 GSEVGFHGAAPDISVK Unmodified 1569.7787 0.77872084 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 2 48.532 48.532 3;4 1.0065E-07 13416 TMT1-4 103.77 86.485 238.37 334.4 229.35 203.47 252.23 332.86 225 333 240 203 261 319 2 2 2 2 2 2 34671 7583 1632 7514 11870;11871 15402;15403 15402 2 GSEVTAMLEK Unmodified 1063.522 0.52196079 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 5 0 1 54.919 54.919 2 7.3001E-05 15943 TMT1-4 107.79 63.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7584 1115 7515 11872 15404 15404 1 GSEYDDFLDEFMEAVSSK Unmodified 2067.8619 0.8619177 1151 P48163-2;P48163 ME1 NADP-dependent malic enzyme yes no 0 0 0 0 0 5.5 0.5 1 1 97.313 97.313 3 0.0021217 32200 TMT1-5 43.208 27.616 0 45.752 0 15.192 5.8244 23.286 0 43 0 14 7 22 0 1 0 1 1 1 1062.8 7585 1151 7516 11873;11874 15405;15406 15406 2 GSFACQCPPGYQK Unmodified 1498.6333 0.63331893 1647 Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 0 0 0 7 0 1 44.72 44.72 3 0.0063271 11454 TMT1-6 61.11 47.147 54.237 57.505 32.886 52.579 64.027 45.077 51 58 36 51 65 44 1 1 1 1 1 1 5718.8 7586 1647 7517 11875 15407 15407 1 GSFEDSTTR Unmodified 998.4305 0.43050325 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 2 0 1 31.178 31.178 2 0.0050429 7464 TMT1-1 67.494 30.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7587 1742 7518 11876 15408 15408 1 GSFGELALMYNTPR Unmodified 1554.7501 0.75006325 695;974 P13861-2;P13861;P31323 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit no no 0 0 0 0 0 8 0 1 66.631 66.631 2 0.025329 20188 TMT1-7 60.345 36.494 54.107 73.332 41.346 35.67 64.548 52.524 51 73 44 36 65 51 1 1 1 1 1 1 6705.3 7588 695;974 7519 11877 15409 15409 1 GSFGEVFK Unmodified 869.42832 0.42831841 3054;2825 Q9P289;Q9P289-3;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 7 0 1 54.629 54.629 2 0.0055633 15317 TMT1-6 117.04 53.55 274.72 658.02 518.53 461.5 377.33 639.49 262 644 536 457 402 610 2 2 2 2 2 2 58879 7589 2825;3054 7520 11878 15410;15411 15410 2 GSFPENLR Unmodified 918.45593 0.45593014 468 P04233-2;P04233 CD74 HLA class II histocompatibility antigen gamma chain yes no 0 0 0 0 0 5 0 1 42.833 42.833 2 0.013083 11099 TMT1-4 95.741 45.11 214.88 338.5 206.45 180.43 271.12 270.49 203 335 218 181 276 261 2 2 2 2 2 2 12815 7590 468 7521 11879 15412;15413 15412 2 GSFSDTGLGDGK Unmodified 1139.5095 0.50948185 2976 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 0 5 0 1 47.587 47.587 3 0.0088646 13067 TMT1-4 60.509 34.85 200.51 261.46 162.97 192.95 208.31 315.99 189 261 174 189 218 302 1 1 1 1 1 1 18170 7591 2976 7522 11880 15414 15414 1 GSFSEQGINEFLR Unmodified 1482.7103 0.71030693 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 5.5 0.5 1 1 62.688 62.688 2 6.9499E-16 19095 TMT1-5 169.81 152.41 268.57 362.09 360.64 203.06 322.63 293.54 254 363 363 211 327 284 3 3 3 3 3 3 105650 7592 1827 7523 11881;11882 15415;15416;15417 15416 3 GSFTLLWPSR Unmodified 1162.6135 0.61349341 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 9 0 1 68.776 68.776 2 1.4391E-05 19154 TMT1-8 137.69 87.733 77.354 102.02 77.483 57.601 62.476 83.497 73 102 80 58 65 80 1 1 1 1 1 1 10989 7593 20 7524 11883 15418 15418 1 GSGDSSQVTQVSPQR Unmodified 1531.7227 0.72266253 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 3.83 1.34 1 2 1 1 1 31.921 31.921 3 6.9103E-35 7976 TMT1-2 197.17 164.41 774.33 1041.1 984.84 666.94 994.29 979 732 1043 999 681 1012 945 9 9 9 9 9 9 438710 7594 484 7525 11884;11885;11886;11887;11888;11889 15419;15420;15421;15422;15423;15424;15425;15426;15427 15422 9 GSGFPDGEGSSR Unmodified 1151.4843 0.48432973 734 P16150 SPN Leukosialin yes yes 0 0 0 0 0 3 0 1 33.427 33.427 2 0.0019052 8708 TMT1-2 87.895 62.952 30.734 44.294 26.914 37.082 35.182 22.448 29 44 29 36 36 22 1 1 1 1 1 1 4246.1 7595 734 7526 11890 15428 15428 1 GSGGEWK Unmodified 719.32385 0.32385333 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 36.461 36.461 2 0.013448 8612 TMT1-4 102.71 48.188 169.28 240.61 199.83 174.4 205.7 233.98 160 240 206 174 212 225 1 1 1 1 1 1 24528 7596 1632 7527 11891 15429 15429 1 GSGLAGPK Unmodified 685.37589 0.3758889 3064 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 0 0 0 0 0 7 0 1 34.829 34.829 2 0.019774 7528 TMT1-6 89.142 36.459 68.904 94.343 61.398 65.651 92.214 90.111 65 94 65 65 94 87 1 1 1 1 1 1 5167.6 7597 3064 7528 11892 15430 15430 1 GSGTAEVELK Unmodified 989.50294 0.50293991 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 3.75 1.48 1 1 1 1 42.265 42.265 2 5.1552E-15 11055 TMT1-3 191.45 98.306 1695.6 2194.4 2236.2 1620.2 2305.8 2208 1603 2205 2263 1644 2348 2133 5 5 5 5 5 5 530350 7598 706;707 7529 11893;11894;11895;11896 15431;15432;15433;15434;15435;15436 15434 6 GSGTAEVELKK Unmodified 1117.5979 0.59790293 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 5.5 0.5 1 1 39.769 39.769 2;3 2.381E-05 10077 TMT1-5 121.9 82.189 4306.9 5933.7 4729 3772 4941.7 5481.1 4068 5924 4875 3794 5070 5274 3 3 3 3 3 3 409400 7599 706;707 7530 11897;11898 15437;15438;15439 15439 3 GSGVTTYSVHPGTVQSELVR Unmodified 2073.0491 0.049082043 2246 Q8TC12;Q8TC12-2 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 6 1 1 1 45.828 45.828 3 1.4289E-13 11920 TMT1-6 110.56 85.11 77.648 70.456 54.823 74.411 54.118 91.198 73 72 58 72 58 87 2 2 2 2 2 2 19590 7600 2246 7531 11899;11900 15440;15441 15441 2 GSIDEVDKR Unmodified 1017.5091 0.50908792 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 1 3 1 1 1 34.008 34.008 3 0.00033976 8799 TMT1-1 80.787 53.74 160.81 247.98 174.79 168.97 167.26 294.77 152 246 183 167 177 281 1 1 1 1 1 1 14733 7601 2930 7532 11901;11902 15442;15443 15442 2 GSIFVVFDSIESAK Unmodified 1497.7715 0.7715102 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 7.5 0.5 1 1 82.397 82.397 3 3.2778E-09 26246 TMT1-7 116.84 87.862 162.04 233.25 159.8 136.59 251.15 271.06 153 232 167 138 255 261 4 4 4 4 4 4 29224 7602 498 7533 11903;11904 15444;15445;15446;15447 15446 4 GSIFVVFDSIESAKK Unmodified 1625.8665 0.86647322 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 1 8 0 1 74.196 74.196 3 0.0016261 23171 TMT1-7 68.257 40.921 77.114 155.32 72.551 96.568 98.362 113.39 73 152 80 94 102 109 1 1 1 1 1 1 7893.3 7603 498 7534 11905 15448 15448 1 GSIGENQIKDEK Unmodified 1316.6572 0.65720872 1597 Q05682-5;Q05682-4 CALD1 Caldesmon yes no 0 0 0 0 1 5 0 1 39.275 39.275 3 0.00085397 9782 TMT1-4 85.457 38.865 115.53 144.53 117.21 148.75 145.93 181.32 109 145 123 145 152 174 1 1 1 1 1 1 14036 7604 1597 7535 11906 15449 15449 1 GSIHDFPGFDPNQDAEALYTAMK Unmodified 2523.1376 0.13763905 555 P08133 ANXA6 Annexin A6 yes yes 0 0 0 0 0 6 0 1 74.406 74.406 4 3.2881E-09 23710 TMT1-5 80.994 62.434 170.07 203.95 97.801 158.1 175.32 196.47 160 204 109 153 181 189 2 2 2 2 2 2 28826 7605 555 7536 11907 15450;15451 15450 2 GSITISAEEIKDNR Unmodified 1531.7842 0.78420015 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 1 5 0 1 48.595 48.595 3 7.5261E-17 13493 TMT1-4 148.08 112.88 191.9 225.29 197.04 182.24 204.91 246.79 181 227 203 181 212 237 1 1 1 1 1 1 34745 7606 252 7537 11908 15452 15452 1 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR Unmodified 3713.8788 0.8788354 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0 1 78.787 78.787 5 1.0307E-07 25487 TMT1-5 57.832 55.878 30.898 28.561 12.629 38.88 42.962 37.15 29 29 15 37 44 36 1 1 1 1 1 1 7952.4 7607 508 7538 11909 15453 15453 1 GSKPEDANFYLYLR Unmodified 1671.8257 0.82567103 542 P07766 CD3E T-cell surface glycoprotein CD3 epsilon chain yes yes 0 0 0 0 1 7 0 1 57.062 57.062 3 0.0018359 16308 TMT1-6 71.506 52.673 107.98 192.43 82.572 158.17 161.72 165.95 102 189 94 152 167 160 1 1 1 1 1 1 13522 7608 542 7539 11910 15454 15454 1 GSLAADKVVEEIR Unmodified 1385.7514 0.75144346 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 5 0 1 51.032 51.032 3 0.0044269 14450 TMT1-4 67.095 40.947 145.82 204.85 205.38 197.87 219.08 209.08 138 205 210 196 225 202 1 1 1 1 1 1 16728 7609 1250 7540 11911 15455 15455 1 GSLCATCGLPVTGR Unmodified 1447.6912 0.69116816 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 0 7 0 1 48.196 48.196 2 0.00077448 12804 TMT1-6 81.92 59.874 30.847 28.42 21.293 14.587 28.63 30.097 29 29 22 15 29 29 1 1 1 1 1 1 4163 7610 165 7541 11912 15456 15456 1 GSLDTMLGLLQSDLSR Unmodified 1704.8716 0.87163495 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 0 7.5 0.5 1 1 86.77 86.77 3 2.3863E-12 27913 TMT1-7 128.06 122.16 84.753 124.94 76.786 65.832 91.933 128.49 80 124 81 66 95 123 4 4 4 4 4 4 28151 7611 165 7542 11913;11914 15457;15458;15459;15460 15460 4 GSLDYRPLTTADPIDEHR Unmodified 2055.0021 0.0021318501 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 1 3.5 0.5 1 1 47.788 47.788 4 1.0669E-07 13354 TMT1-3 94.387 69.593 446.98 476.09 395.99 353.12 426.24 456.88 421 482 409 352 438 440 3 3 3 3 3 3 66940 7612 39 7543 11915;11916 15461;15462;15463 15463 3 GSLFGGSVK Unmodified 850.45487 0.45486751 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 9 0 1 50.666 50.666 2 0.021265 12052 TMT1-8 72.243 21.342 84.465 100.39 146.01 99.559 171.48 173.13 80 102 145 102 174 167 1 1 1 1 1 1 12781 7613 2267 7544 11917 15464 15464 1 GSLGATGEIK Unmodified 931.49746 0.4974606 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5.5 0.5 1 1 42.544 42.544 2;3 0.00066931 11088 TMT1-4 96.113 55.084 176.87 224.14 199.64 127.23 215.73 187.86 167 225 203 131 218 182 2 2 2 2 2 2 15932 7614 1632 7545 11918;11919 15465;15466 15465 2 GSLLDFLK Unmodified 891.50657 0.50656873 673;550;549;505;573 P07948-2;P07948;P08631-3;P08631-2;P08631-4;P08631;P12931;P12931-2;P06241-3;P06241-2;P06241;P07947 LYN;HCK;SRC;FYN;YES1 Tyrosine-protein kinase Lyn;Tyrosine-protein kinase HCK;Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes no no 0 0 0 0 0 8.5 0.5 1 1 75.231 75.231 2 0.0013813 21733 TMT1-8 145.63 68.734 1497.5 2005 2334.4 1612.6 1936.6 2305.9 1418 2016 2342 1636 1998 2215 5 5 5 5 5 5 292610 7615 550;573;673;505;549 7547 11920;11921 15467;15468;15469;15470;15471 15471 5 GSLLDFLKGETGK Unmodified 1363.7347 0.73473076 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 1 9 0 1 71.396 71.396 3 3.2124E-09 20238 TMT1-8 110.98 67.602 224.84 281.47 204.23 208.72 168.78 380.01 212 282 214 205 183 361 1 1 1 1 1 1 21304 7616 673 7548 11922 15472 15472 1 GSLLFTAGPLEEER Unmodified 1517.7726 0.77257283 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 5 0 1 65.489 65.489 3 6.2986E-05 20026 TMT1-4 88.706 54.442 61.678 72.985 31.562 60.606 48.23 67.914 58 73 36 58 51 65 1 1 1 1 1 1 22422 7617 1279 7549 11923 15473 15473 1 GSLLGCSIDISSVLDMEAITFKK Unmodified 2483.2651 0.26514775 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 9 0 1 87.26 87.26 4 0.03561 26461 TMT1-8 27.203 1.1978 23.108 28.299 59.736 27.068 56.808 76.197 22 29 58 29 58 73 1 1 1 1 1 1 5071.5 7618 536 7550 11924 15474 15474 1 GSLLGCSIDITSAADSEAITFQK Unmodified 2383.1577 0.15770579 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 6 0 2 76.445 76.445 3;4 1.7807E-09 24549 TMT1-5 85.945 69.822 77.203 116.71 90.372 88.543 119.86 168.21 73 116 94 88 124 161 2 2 2 2 2 2 20483 7619 761 7551 11925;11926 15475;15476 15475 2 GSLNPGK Unmodified 671.36024 0.36023884 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6.5 0.5 1 1 34.453 34.453 2 0.010617 7395 TMT1-6 107.32 60.947 355.03 306.13 304.77 308.52 355.17 332.05 334 315 313 305 364 321 2 2 2 2 2 2 32965 7620 787 7552 11927;11928 15477;15478 15478 2 GSLPTFR Unmodified 776.41809 0.41808807 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 4.5 3.5 1 1 45.313 45.313 2 7.0171E-05 11441 TMT1-7 124.34 102.41 47.601 66.027 59.04 61.967 63.103 89.875 45 66 61 61 66 86 1 1 1 1 1 1 7177.3 7621 535 7553 11929;11930 15479;15480 15480 2 GSLQILDQLLLPK Unmodified 1436.8603 0.86026563 2546 Q9BV20-2;Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 0 9 0 1 84.378 84.378 3 0.00016221 25222 TMT1-8 87.18 54.233 46.596 73.845 40.97 44.281 72.784 44.827 44 73 44 44 73 44 1 1 1 1 1 1 4873.5 7622 2546 7554 11931 15481 15481 1 GSLTFEPLTLVPIQTK Unmodified 1742.9818 0.98183733 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 8.5 0.5 1 1 79.374 79.374 3 8.5964E-08 25210 TMT1-7 103.88 78.345 238.99 356.8 287.44 278.01 289.12 285.97 226 355 298 275 298 276 4 4 4 4 4 4 37958 7623 2717 7555 11932;11933 15482;15483;15484;15485 15484 4 GSLVDYLR Unmodified 921.49198 0.4919813 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 6 0 1 57.607 57.607 2 0.0029292 17183 TMT1-5 134.15 45.104 250.45 265.28 242.14 202.4 326.6 300.89 236 269 248 204 331 291 1 1 1 1 1 1 46285 7624 1083 7556 11934 15486 15486 1 GSNEEDTDTPLFIGK Unmodified 1621.7471 0.74714594 16 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 58.896 58.896 3 4.1845E-05 17780 TMT1-3 87.932 66.681 85.022 78.195 71.277 58.114 54.867 91.176 80 80 73 58 58 87 1 1 1 1 1 1 7138.4 7625 16 7557 11935 15487 15487 1 GSNPHLQTFTFTR Unmodified 1504.7423 0.74227576 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 8.5 0.5 1 1 44.198 44.198 3 3.7121E-06 11267 TMT1-7 111.38 88.372 154.7 179.19 177.52 152.38 168.8 180.67 146 181 181 152 174 174 2 2 2 2 2 2 39261 7626 2525 7558 11936;11937 15488;15489 15488 2 GSNTCGITK Unmodified 936.43348 0.43348014 1333 P56202 CTSW Cathepsin W yes yes 0 0 0 0 0 6 0 1 33.433 33.433 2 0.0018342 7580 TMT1-5 112.13 58.963 61.355 72.087 86.625 64.525 72.147 36.317 58 73 87 65 73 36 1 1 1 1 1 1 6196.8 7627 1333 7559 11938 15490 15490 1 GSNTIASAAADKIPGLLGVFQK Unmodified 2157.1794 0.17936793 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 1 9 0 1 76.413 76.413 4 1.5356E-09 22178 TMT1-8 78.008 57.194 99.903 100.52 76.066 88.868 89.827 128.55 94 102 80 87 94 123 1 1 1 1 1 1 9344.4 7628 1310 7560 11939 15491 15491 1 GSNTTSHLHQAVAK Unmodified 1449.7324 0.73243935 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 7.5 1.5 1 1 27.151 27.151 4 1.4279E-05 4423 TMT1-8 92.65 67.858 108.52 68.72 97.8 80.05 83.013 125.55 102 73 98 80 87 120 2 2 2 2 2 2 6312.3 7629 851 7561 11940;11941 15492;15493 15493 2 GSPAINVAVHVFR Unmodified 1365.7517 0.75171823 446 P02766 TTR Transthyretin yes yes 0 0 0 0 0 8.5 0.5 1 1 52.03 52.03 3 3.4875E-13 12505 TMT1-8 135.26 96.303 563.99 712.52 547.29 535.48 537.13 760.72 532 714 570 529 562 728 3 3 3 3 3 3 82818 7630 446 7562 11942;11943 15494;15495;15496 15495 3 GSPAPAVLAEEAR Unmodified 1266.6568 0.65681479 1331 P56181-2 yes yes 0 0 0 0 0 3 0 1 45.42 45.42 2 1.5914E-07 13456 TMT1-2 100.93 69.559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7631 1331 7563 11944 15497 15497 1 GSPAPLGVR Unmodified 852.48175 0.48175096 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 6 0 1 36.435 36.435 2 0.00030931 8768 TMT1-5 98.009 65.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7632 126 7564 11945 15498 15498 1 GSPFPEVAESVQQELESYR Unmodified 2151.012 0.012027834 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 77.379 77.379 3 1.3208E-06 24744 TMT1-4 69.024 59.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7633 2273 7565 11946 15499 15499 1 GSPLVVISQGK Unmodified 1083.6288 0.62880913 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 8 0 1 55.079 55.079 3 1.0603E-06 15565 TMT1-7 128.01 82.934 318.07 390.41 313.12 303.21 320.57 402.33 300 392 325 300 333 386 2 2 2 2 2 2 44127 7634 1892 7566 11947 15500;15501 15500 2 GSPNETELIESAK Unmodified 1373.6674 0.66743906 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 3 0 1 50.667 50.667 3 0.00020747 15524 TMT1-2 67.964 46.091 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7635 1999 7567 11948 15502 15502 1 GSPQAGVDLSFATR Unmodified 1404.6997 0.69974224 1740 Q13884 SNTB1 Beta-1-syntrophin yes yes 0 0 0 0 0 6 0 1 52.989 52.989 2 0.0014457 15329 TMT1-5 60.901 39.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7636 1740 7568 11949 15503 15503 1 GSPQQIDHAK Unmodified 1079.536 0.53597137 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 28.925 28.925 3 3.6374E-07 5710 TMT1-4 160.75 141.48 207.43 275.5 249.96 163.64 212.5 202.87 196 276 254 167 217 196 3 3 3 3 3 3 15066 7637 2334 7569 11950;11951 15504;15505;15506 15506 3 GSQAQPDSPSAQLALIAASQSFLQPGGK Unmodified 2753.3984 0.39842185 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.29 2.6 1 4 2 79.57 79.57 3;4;5 9.0273E-19 23295 TMT1-8 85.407 69.108 2713.8 3232.7 3357 2464.6 3083.1 3207 2563 3263 3396 2491 3161 3091 12 12 12 12 12 12 1403700 7638 3010 7570 11952;11953;11954;11955;11956;11957;11958 15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518 15518 12 GSQLAAGQK Unmodified 858.45593 0.45593014 1579 Q03519;Q03519-2 TAP2 Antigen peptide transporter 2 yes no 0 0 0 0 0 6 0 1 32.628 32.628 2 0.0042654 7295 TMT1-5 99.815 43.305 54.102 57.127 56.032 67.878 48.958 36.979 51 58 58 66 51 36 1 1 1 1 1 1 5376 7639 1579 7571 11959 15519 15519 1 GSSAGFDR Unmodified 795.35113 0.35113072 1361 P60900 PSMA6 Proteasome subunit alpha type-6 yes yes 0 0 0 0 0 3 0 1 26.879 26.879 2 0.0086162 6059 TMT1-2 101.6 51.576 68.931 86.863 63.253 34.067 80.327 52.074 65 87 65 36 80 51 1 1 1 1 1 1 10488 7640 1361 7572 11960 15520 15520 1 GSSASLVLK Unmodified 860.49673 0.49673232 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 7.67 0.471 1 2 46.754 46.754 2 1.0252E-05 12304 TMT1-6 157.91 78.457 674.39 719.93 740.77 541.7 929.9 767.63 636 731 750 552 938 745 2 2 2 2 2 2 84431 7641 1537 7573 11961;11962;11963 15521;15522;15523 15521 3 GSSASLVLKR Unmodified 1016.5978 0.59784335 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 1 9 0 1 38.625 38.625 3 0.00029821 7638 TMT1-8 113.46 34.689 238.91 286.24 180.44 151.83 188.67 272.84 225 287 190 152 196 261 1 1 1 1 1 1 9858.5 7642 1537 7574 11964 15524 15524 1 GSSAVLNVTPK Unmodified 1071.5924 0.59242362 8 A2RUS2-2;A2RUS2 DENND3 DENN domain-containing protein 3 yes no 0 0 0 0 0 7 0 1 46.551 46.551 3 0.00066704 12157 TMT1-6 64.121 19.483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7643 8 7575 11965 15525 15525 1 GSSCFECTHYQSFLEYR Unmodified 2169.8884 0.888424 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 0 5 0 1 53.791 53.791 3 8.9733E-10 15527 TMT1-4 106.82 97.162 61.576 64.066 56.328 51.043 71.411 75.78 58 65 58 51 73 73 1 1 1 1 1 1 12499 7644 837 7576 11966 15526 15526 1 GSSGGSGAKPSDAASEAAR Unmodified 1661.7605 0.7605046 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 1 4 0 1 27.726 27.726 3 0.0084676 5502 TMT1-3 49.537 38.278 30.778 44.419 19.256 38.781 27.261 37.598 29 44 22 37 29 36 1 1 1 1 1 1 2757.9 7645 1584 7577 11967 15527 15527 1 GSSGSVVVDLLYWR Unmodified 1536.7936 0.79364262 2708 Q9NQC3-2 RTN4 Reticulon-4 yes yes 0 0 0 0 0 8 0 2 77.086 77.086 2;3 1.0755E-09 24317 TMT1-7 122.18 79.151 80.164 139.52 114.33 78.409 117.88 148.01 76 138 117 80 121 142 3 3 3 3 3 3 57320 7646 2708 7578 11968;11969 15528;15529;15530 15529 3 GSSNFCVK Unmodified 897.40145 0.40145173 210 O43865-2;O43865 AHCYL1 Putative adenosylhomocysteinase 2 yes no 0 0 0 0 0 7 0 1 40.552 40.552 2 0.01164 9799 TMT1-6 97.635 57.283 46.287 80.54 87.283 64.378 77.87 83.058 44 80 88 65 80 80 1 1 1 1 1 1 6796.4 7647 210 7579 11970 15531 15531 1 GSSSYSQLLAATCLTK Unmodified 1685.8294 0.82943578 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 8 0 1 64.523 64.523 3 0.0022389 19325 TMT1-7 61.211 41.633 177.09 239.84 150.24 170.5 163.68 305.54 167 239 160 167 174 291 1 1 1 1 1 1 11782 7648 2876 7580 11971 15532 15532 1 GSSVVAYEGQSWHDYCFHCK Unmodified 2416.0001 9.97146E-05 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 6 0 1 49.948 49.948 4 1.6334E-13 14131 TMT1-5 107.65 84.752 160.38 252.18 243.17 158.51 216.03 259.27 152 251 246 162 222 249 1 1 1 1 1 1 35549 7649 1735 7581 11972 15533 15533 1 GSSYNPPLPPLK Unmodified 1268.6765 0.6764876 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 7.5 0.5 1 1 56.121 56.121 2;3 2.7294E-08 15950 TMT1-6 116.77 99.826 99.712 99.989 108.62 63.125 76.865 114 94 102 109 65 80 109 1 1 1 1 1 1 9783.6 7650 214 7582 11973;11974 15534;15535 15534 2 GSTAPVGGGAFPTIVER Unmodified 1614.8366 0.83657007 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 6 0 1 55.227 55.227 2 1.2582E-29 16160 TMT1-5 174.37 139.83 30.634 44.017 43.888 20.759 35.676 29.896 29 44 44 22 36 29 1 1 1 1 1 1 13052 7651 1827 7583 11975 15536 15536 1 GSTAPVGGGAFPTIVEREPWDGR Unmodified 2355.1608 0.16075776 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 6 0 2 60.057 60.057 3;4 8.2523E-23 18111 TMT1-5 122.3 99.646 162.13 187.07 184.94 168.65 152.05 189.67 153 189 189 167 159 182 2 2 2 2 2 2 44393 7652 1827 7584 11976;11977 15537;15538 15537 2 GSTAVGVR Unmodified 745.40825 0.40825167 108 O14818;O14818-4 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 0 5 0 1 26.35 26.35 2 0.011355 4649 TMT1-4 98.009 59.203 46.657 50.271 50.676 28.16 27.456 46.121 44 51 51 29 29 44 1 1 1 1 1 1 3968.1 7653 108 7585 11978 15539 15539 1 GSTDDKGPVAGWINALEAYQK Unmodified 2219.0859 0.08586148 2434 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase yes yes 0 0 0 0 1 7.5 0.5 1 1 74.523 74.523 3;4 1.2582E-13 23176 TMT1-6 108.71 95.907 162.02 248.31 150.13 139.01 152.89 235.49 153 246 159 138 160 225 2 2 2 2 2 2 26493 7654 2434 7586 11979;11980 15540;15541 15540 2 GSTDNLMDDIER Unmodified 1364.5878 0.58780853 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 2 0 1 53.599 53.599 3 0.0099892 16272 TMT1-1 59.185 37.627 30.542 75.061 33.012 28.78 50.463 45.464 29 73 36 29 51 44 1 1 1 1 1 1 8047.8 7655 1232 7587 11981 15542 15542 1 GSTGFGQDSILSLPGNVGHQDVK Unmodified 2312.1397 0.13968796 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 6 0 1 60.111 60.111 3 2.1555E-15 18137 TMT1-5 90.955 62.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7656 692 7588 11982 15543 15543 1 GSTLTSPCQDFGK Unmodified 1396.6293 0.62927941 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 4 2.16 1 1 1 49.131 49.131 3 5.5215E-11 13631 TMT1-5 135.02 113.62 1298.3 1635.6 1687 1265 1720.7 1474.2 1227 1646 1708 1279 1749 1429 4 4 4 4 4 4 291850 7657 567 7589 11983;11984;11985 15544;15545;15546;15547 15546 4 GSTLTSPCQDFGKR Unmodified 1552.7304 0.73039044 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 7.75 0.829 2 1 1 41.914 41.914 3;4 1.0804E-27 10294 TMT1-6 188.63 148.11 1764.4 2352.8 1905.1 1689.8 1632.3 2385 1666 2353 1969 1678 1713 2281 5 5 5 5 5 5 319230 7658 567 7590 11986;11987;11988;11989 15548;15549;15550;15551;15552;15553 15548 6 GSTNLGVNQAGFTLHSAIYAARPDVK Unmodified 2686.3827 0.3827122 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 1 8 0 1 56.135 56.135 4 0.0017197 16107 TMT1-7 42.039 21.225 38.037 58.313 49.913 35.43 50.157 45.473 36 58 51 36 51 44 1 1 1 1 1 1 12467 7659 1023 7591 11990 15554 15554 1 GSTPYGGVK Unmodified 864.43413 0.43413207 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 6 0 1 37.094 37.094 2 0.0087836 9010 TMT1-5 90.601 54.031 115.35 160.22 134.29 108.49 140.45 181.48 109 160 138 109 145 174 1 1 1 1 1 1 18134 7660 878 7592 11991 15555 15555 1 GSTTATFAAVVLYVENER Unmodified 1926.9687 0.96870646 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 7 0 1 80.383 80.383 3 3.3449E-08 25450 TMT1-6 100.69 84.158 84.535 91.953 141.35 69.624 92.528 106.09 80 94 139 73 95 102 2 2 2 2 2 2 7958.4 7661 655 7593 11992 15556;15557 15556 2 GSVAIWSGKPPICEK Unmodified 1627.8392 0.83921261 723 P15529-16;P15529-7;P15529-4;P15529-6;P15529-3;P15529-5;P15529-2;P15529-15;P15529-9;P15529-12;P15529-14;P15529-8;P15529-11;P15529-13;P15529-10;P15529 CD46 Membrane cofactor protein yes no 0 0 0 0 1 9 0 1 55.11 55.11 3 0.00036831 13811 TMT1-8 66.335 46.595 77.264 101.77 92.699 56.413 77.43 106.52 73 102 94 58 80 102 1 1 1 1 1 1 9054 7662 723 7594 11993 15558 15558 1 GSVFNTWK Unmodified 937.46577 0.46576654 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 9 0 1 55.309 55.309 2 0.0077095 13911 TMT1-8 95.358 44.48 193.1 178.07 216.89 188.74 261.01 218.54 182 183 219 189 265 212 1 1 1 1 1 1 60319 7663 567 7595 11994 15559 15559 1 GSVHFGLVR Unmodified 970.53485 0.53484916 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 8 0 1 40.352 40.352 3 0.0086133 9743 TMT1-7 68.224 42.33 130.47 150.83 125.74 141.27 110.16 136.5 123 152 131 138 116 131 1 1 1 1 1 1 12805 7664 2594 7596 11995 15560 15560 1 GSVLPNSDKK Unmodified 1043.5611 0.56112349 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 1 7 0 1 37.903 37.903 3 0.027295 8706 TMT1-6 57.836 26.607 108.1 152.83 96.48 93.603 180.15 141.97 102 152 102 94 181 138 1 1 1 1 1 1 12946 7665 844 7597 11996 15561 15561 1 GSVSDEEMMELR Unmodified 1381.5854 0.58536569 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 2 0 1 51.037 51.037 2 4.946E-14 15357 TMT1-1 178.1 142.83 68.366 140.34 112.87 86.988 73.129 190.86 65 138 116 87 80 181 1 1 1 1 1 1 33585 7666 690 7598 11997 15562 15562 1 GSVVTNER Unmodified 860.43519 0.4351947 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 3 0 1 25.761 25.761 2 0.026227 5637 TMT1-2 84.498 28.376 15.653 36.524 43.352 44.582 49.223 60.423 15 36 44 44 51 58 1 1 1 1 1 1 13395 7667 1684 7599 11998 15563 15563 1 GSWATHK Unmodified 785.38204 0.38203692 1284 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 0 8 0 1 31.691 31.691 3 0.019292 6479 TMT1-7 68.422 41.907 77.43 86.041 78.109 65.068 70.253 90.737 73 87 80 65 73 87 1 1 1 1 1 1 8087.6 7668 1284 7600 11999 15564 15564 1 GSWYSMR Unmodified 885.38032 0.38032236 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 7 0 1 45.223 45.223 2 0.015963 11675 TMT1-6 100.75 57.841 153.25 237.58 190.98 136.2 173.03 292.48 145 236 196 138 181 279 1 1 1 1 1 1 33895 7669 438 7601 12000 15565 15565 1 GSYFGSLVQDYK Unmodified 1362.6456 0.6455814 2239 Q8TB24-4;Q8TB24 RIN3 Ras and Rab interactor 3 yes no 0 0 0 0 0 7 0 1 64.182 64.182 3 0.014375 19130 TMT1-6 54.023 25.855 54.083 80.82 39.069 76.705 40.16 68.144 51 80 44 73 44 65 1 1 1 1 1 1 5979.6 7670 2239 7602 12001 15566 15566 1 GSYGDLGGPIITTQVTIPK Unmodified 1916.0255 0.025493054 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 7 0 2 68.682 68.682 3;4 3.0202E-13 20910 TMT1-6 108.77 83.445 424.45 656.99 421.96 476.36 532.71 603.08 401 651 448 468 550 580 3 3 3 3 3 3 184360 7671 1409;1410 7603 12002;12003 15567;15568;15569 15569 3 GSYGYIK Unmodified 786.3912 0.39120462 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 6.5 0.5 1 1 42.769 42.769 2 0.0081007 11191 TMT1-5 119.89 58.926 701.45 716.59 703.64 623.7 813.35 975.63 661 729 719 623 837 937 2 2 2 2 2 2 62887 7672 126 7604 12004;12005 15570;15571 15570 2 GSYSLSHVYTPNDVR Unmodified 1693.806 0.80599822 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 5 0 1 43.73 43.73 3 2.6713E-11 11544 TMT1-4 127.71 120.48 68.736 110.07 76.335 73.522 91.302 106.13 65 109 80 73 94 102 1 1 1 1 1 1 11544 7673 539 7605 12006 15572 15572 1 GSYVSIHSSGFR Unmodified 1295.6258 0.62584901 1738;40 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 8 1 1 1 38.609 38.609 3 6.3666E-12 7587 TMT1-8 153.11 116.54 169.22 277.13 179.22 175.1 234.18 256.62 160 274 189 174 240 247 2 2 2 2 2 2 22037 7674 40;1738 7606 12007;12008 15573;15574 15574 2 GTAFGGWK Unmodified 822.40244 0.40243801 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 9 0 1 51.53 51.53 2 0.0058575 12389 TMT1-8 125.25 50.04 486.14 1059.7 712.57 811.38 918.1 933.2 462 1038 753 797 944 900 2 2 2 2 2 2 51674 7675 660 7607 12009 15575;15576 15576 2 GTAVVNGEFK Unmodified 1020.524 0.52400971 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 6 0 1 45.232 45.232 2 0.0097182 12285 TMT1-5 84.687 61.857 100.01 115.93 45.069 59.564 60.81 129.38 94 116 51 58 65 123 1 1 1 1 1 1 7864.4 7676 949 7608 12010 15577 15577 1 GTAYTFFTPGNLK Unmodified 1415.7085 0.70851601 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 9 0 1 65.355 65.355 3 1.0247E-11 17797 TMT1-8 126.76 99.667 123.1 167.91 88.171 63.789 106.39 136.61 116 167 94 65 109 131 1 1 1 1 1 1 36209 7677 2321 7609 12011 15578 15578 1 GTAYVVYEDIFDAK Unmodified 1589.7613 0.76133944 2991 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 0 0 0 5 0 1 75.819 75.819 3 0.00076256 24058 TMT1-4 73.91 47.369 54.167 42.2 57.621 52.309 0 54.366 51 44 58 51 0 51 1 1 1 1 0 1 13594 7678 2991 7610 12012 15579 15579 1 GTCSRPDTECK Unmodified 1309.5391 0.5390842 2724 Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56 MBNL1 Muscleblind-like protein 1 yes no 0 0 0 0 1 4 0 1 25.198 25.198 3 0.04184 4502 TMT1-3 51.998 39.372 54.411 19.133 36.244 28.873 35.303 29.907 51 22 36 29 36 29 1 1 1 1 1 1 2249.4 7679 2724 7611 12013 15580 15580 1 GTDECAIESIAVAATPIPK Unmodified 1941.9717 0.97174292 1288 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 0 5 0 1 70.119 70.119 4 2.8491E-05 21874 TMT1-4 71.558 52.962 76.871 147.08 120.34 79.249 54.152 83.735 73 145 123 80 58 80 1 1 1 1 1 1 15672 7680 1288 7612 12014 15581 15581 1 GTDELYAVK Unmodified 994.49713 0.49712625 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 0 4 0 1 49.184 49.184 2 0.0018425 13993 TMT1-3 111.95 27.472 99.544 145.93 97.882 72.38 83.769 113.8 94 145 102 73 87 109 1 1 1 1 1 1 13435 7681 501 7613 12015 15582 15582 1 GTDVNVFNTILTTR Unmodified 1549.81 0.81002097 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 7.33 0.471 2 1 69.471 69.471 2;3 1.1879E-21 21172 TMT1-6 171.99 124.76 238.92 420.29 244.95 247.71 349.35 369.53 226 414 261 246 357 356 5 5 5 5 5 5 137390 7682 461 7614 12016;12017;12018 15583;15584;15585;15586;15587 15584 5 GTEDEVEKYSESVK Unmodified 1598.7312 0.73116153 551;552 P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 1 3 0 1 47.707 47.707 4 0.0078748 14349 TMT1-2 57.136 38.351 138.93 127.23 166.93 121.81 142.22 112.14 131 131 167 123 145 109 1 1 1 1 1 1 9127.7 + 7683 551;552 7615 12019 15588 15588 1 GTEDFIVESLDASFR Unmodified 1684.7944 0.79443049 1113 P43307-2;P43307 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 0 4 0 1 78.956 78.956 3 1.6624E-10 25560 TMT1-3 118.08 99.484 46.477 72.436 62.084 82.291 77.047 83.081 44 72 65 80 80 80 2 2 2 2 2 2 27164 7684 1113 7616 12020 15589;15590 15589 2 GTEIGVLAK Unmodified 886.51238 0.51238239 2881 Q9UIJ7 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 0 0 0 0 0 6 0 1 50.119 50.119 2 0.000953 14233 TMT1-5 126.41 41.348 258.3 383.53 265.19 156.42 141 375.47 244 381 274 160 154 356 1 1 1 1 1 1 26162 7685 2881 7617 12021 15591 15591 1 GTELDLSWISK Unmodified 1247.6398 0.63976774 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 7 0 1 70.914 70.914 3 0.0024837 21730 TMT1-6 76.655 62.691 99.577 130.91 104.98 103.39 97.792 120.87 94 131 109 102 102 116 1 1 1 1 1 1 9838.6 7686 2982 7618 12022 15592 15592 1 GTELWLGVDALGLNIYEHDDKLTPK Unmodified 2796.4334 0.43341037 1015 P35241;P35241-5;P35241-4 RDX Radixin yes no 0 0 0 0 1 7 0 1 77.489 77.489 4 0.01806 24296 TMT1-6 37.228 20.012 38.208 51.233 27.18 20.899 81.189 44.587 36 51 29 22 80 44 1 1 1 1 1 1 6168.1 7687 1015 7619 12023 15593 15593 1 GTEPIVVDPFDPR Unmodified 1440.7249 0.72489436 849 P22681 CBL E3 ubiquitin-protein ligase CBL yes yes 0 0 0 0 0 4 0 1 65.009 65.009 2 0.00025011 20249 TMT1-3 99.015 51.077 15.889 14.517 22.248 13.57 21.604 22.836 15 15 22 14 22 22 1 1 1 1 1 1 5943.6 7688 849 7620 12024 15594 15594 1 GTEWVDPEDPTVIAENELLGAAAAIEAAAK Unmodified 3050.5084 0.50842581 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.83 1.95 1 1 1 2 1 105.34 105.34 4;5 1.2849E-19 31762 TMT1-3 98.326 85.772 351.82 390.74 411.59 274.48 373.99 408.27 332 396 415 280 383 393 14 14 14 14 14 14 105500 7689 3010 7621 12025;12026;12027;12028;12029;12030 15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608 15596 14 GTFATLSELHCDK Unmodified 1477.6871 0.68712864 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 6 2.58 1 1 1 1 1 1 51.215 51.215 3 3.0785E-22 14020 TMT1-7 189.3 154.26 7893.7 8492 7288.1 6061.6 2428.3 4394 7437 8596 7493 5985 2732 4187 10 10 10 10 10 10 1248000 7690 1497 7622 12031;12032;12033;12034;12035;12036 15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619 15617 11 GTFATLSELHCDKLHVDPENFR Unmodified 2585.2333 0.23327077 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 1 5.5 2.69 1 1 1 1 58.349 58.349 5 9.3666E-29 17211 TMT1-5 130.09 95.932 4157.1 4580.4 3289.8 2943.6 1479.7 2837 3914 4620 3435 2898 1637 2701 8 8 8 8 8 8 617140 7691 1497 7623 12037;12038;12039;12040 15620;15621;15622;15623;15624;15625;15626;15627 15621 8 GTFDIYVK Unmodified 941.48583 0.48583328 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 7 0 1 57.989 57.989 2 0.00075436 16648 TMT1-6 148.38 102.66 194.6 235.48 277.14 216.18 296.39 369.97 184 238 279 218 305 355 1 1 1 1 1 1 46692 7692 974 7624 12041 15628 15628 1 GTFDNAETKK Unmodified 1109.5353 0.53530267 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 6 0 1 36.495 36.495 3 0.025558 8797 TMT1-5 58.829 34.842 146.47 158.1 135.34 84.194 150.48 135.35 138 160 138 87 152 131 1 1 1 1 1 1 9127.3 7693 1763 7625 12042 15629 15629 1 GTFHTMWHVTRGAVLK Unmodified 1839.9566 0.9566424 1927 Q32ZD5 yes yes 0 0 0 0 1 4 0 1 40.345 40.345 4 0.0047931 10446 TMT1-3 54.7 5.579 300.42 486.3 312.76 329.85 358.09 462.02 284 481 331 325 372 443 1 1 1 1 1 1 11467 7694 1927 7626 12043 15630 15630 1 GTFSQLSELHCDK Unmodified 1520.6929 0.6929423 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 6 0 1 48.452 48.452 3 0.00010109 13527 TMT1-5 91.993 59.047 168.69 391.34 350.82 201.08 110.12 270.82 161 384 355 205 123 257 1 1 1 1 1 1 26129 7695 428 7627 12044 15631 15631 1 GTGASGSFK Unmodified 810.38718 0.38718187 630;745;743;744 P10412;Q02539;P22492;P16401;P16402;P16403 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.5;Histone H1.3;Histone H1.2 no no 0 0 0 0 0 6 2.68 1 1 2 1 34.917 34.917 2;3 0.00042098 8071 TMT1-5 138.26 57.965 1224 1384.3 1042.6 874.19 1298.3 896.77 1153 1395 1082 879 1309 876 5 5 5 5 5 5 243320 7696 630;743;744;745 7628 12045;12046;12047;12048;12049 15632;15633;15634;15635;15636 15633 5 GTGELTQLLNSLCTAVK Unmodified 1803.94 0.94004887 589 P09467 FBP1 Fructose-1,6-bisphosphatase 1 yes yes 0 0 0 0 0 9 0 1 84.255 84.255 3 8.7493E-21 25204 TMT1-8 134.76 98.536 38.082 58.437 42.309 35.928 47.752 114.83 36 58 44 36 51 109 1 1 1 1 1 1 7168.1 7697 589 7629 12050 15637 15637 1 GTGIVSAPVPK Unmodified 1024.5917 0.59169534 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 7.5 0.5 1 1 47.446 47.446 2;3 4.6905E-05 12526 TMT1-6 106.29 65.859 257.96 498.24 406.32 331.32 564.68 475.31 245 491 418 335 570 461 2 2 2 2 2 2 52898 7698 727 7630 12051;12052 15638;15639 15638 2 GTGLDEAMEWLVETLK Unmodified 1790.8761 0.87605162 1072 P40616-2;P40616 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 101.57 101.57 3 1.1295E-08 32990 TMT1-6 108.89 83.839 46.436 97.145 48.088 47.446 56.311 63.419 44 95 52 47 58 61 3 3 3 3 3 3 5166.9 7699 1072 7631 12053;12054 15640;15641;15642 15641 3 GTGLQPGEEELPDIAPPLVTPDEPK Unmodified 2598.3065 0.30647852 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 3 0 1 72.882 72.882 4 0.00045529 24201 TMT1-2 50.364 35.594 69.104 79.79 40.118 52.847 26.871 30.147 65 80 44 51 29 29 1 1 1 1 1 1 6510.6 7700 1122 7632 12055 15643 15643 1 GTHCNQVEVIATLK Unmodified 1568.7981 0.79807608 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 6.14 2.36 1 3 1 1 1 46.939 46.939 2;3;4 5.4761E-17 12209 TMT1-5 146 115.56 7298.9 8642.2 7769 6304.3 9440.7 9550.6 6886 8707 7953 6354 9616 9212 10 10 10 10 10 10 2008200 7701 448 7633 12056;12057;12058;12059;12060;12061;12062 15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654 15645 11 GTHTAVSSNDR Unmodified 1143.5269 0.52686325 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 2.5 0.5 1 1 16.925 16.925 3 0.00041711 3099 TMT1-2 94.363 69.508 3.1822 3.9945 2.808 4.0914 6.0187 2.0186 3 4 3 4 6 2 2 2 2 2 2 1 1509 7702 2791 7634 12063;12064 15655;15656 15656 2 GTIEILSDVQLIK Unmodified 1427.8235 0.82354577 496 P05388;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 6.5 0.5 1 1 76.165 76.165 3 1.4284E-11 24490 TMT1-5 145.08 81.038 192.65 284.75 201.46 197.27 263.29 232.34 182 283 211 196 268 225 4 4 4 4 4 4 39972 7703 496 7635 12065;12066 15657;15658;15659;15660 15658 4 GTIEYTVESR Unmodified 1153.5615 0.56151742 2181 Q8N573-2;Q8N573-5;Q8N573-8;Q8N573;Q8N573-3 OXR1 Oxidation resistance protein 1 yes no 0 0 0 0 0 3 0 1 41.733 41.733 2 4.6142E-05 11997 TMT1-2 112.8 80.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7704 2181 7636 12067 15661 15661 1 GTINFLHADCDK Unmodified 1389.6347 0.63469914 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 6 0 1 48.781 48.781 3 0.0011422 13657 TMT1-5 77.527 56.063 252.37 485.05 454.24 245.53 441.06 625.95 240 479 458 257 453 599 1 1 1 1 1 1 19636 7705 2521 7637 12068 15662 15662 1 GTINFLHADCDKFR Unmodified 1692.8042 0.80422409 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 1 8 0 1 50.555 50.555 4 1.0315E-10 13829 TMT1-7 126.48 103.07 186.33 483.39 374.11 256.62 337.8 419.96 178 472 384 261 348 403 1 1 1 1 1 1 25989 7706 2521 7638 12069 15663 15663 1 GTIQVITQGTSLK Unmodified 1344.7613 0.76127986 159 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 0 8 0 1 56.435 56.435 3 0.00096282 16149 TMT1-7 56.65 33.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7707 159 7639 12070 15664 15664 1 GTITDAPGFDPLRDAEVLR Unmodified 2042.0433 0.043268383 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 1 4.67 0.471 1 2 65.683 65.683 3;4 9.9847E-10 20144 TMT1-4 99.891 72.555 230.1 320.74 189.03 229.21 289.9 389.35 217 319 203 225 300 373 3 3 3 3 3 3 77908 7708 1234 7640 12071;12072;12073 15665;15666;15667 15666 3 GTITQNER Unmodified 917.45666 0.45665842 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 3 0 1 24.56 24.56 2 0.023952 5197 TMT1-2 86.136 65.581 15.847 14.399 29.459 21.891 21.222 22.846 15 15 29 22 22 22 1 1 1 1 1 1 2491.1 7709 1785 7641 12074 15668 15668 1 GTITVSAQELK Unmodified 1145.6292 0.62920306 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 6 0 1 50.623 50.623 2 2.2395E-32 14392 TMT1-5 215.87 140.02 153.64 203.04 155.05 114.78 147.16 190.88 145 203 160 116 152 183 1 1 1 1 1 1 20886 7710 2495 7642 12075 15669 15669 1 GTLDPVEK Unmodified 857.44945 0.44944778 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 3.5 1.12 1 1 1 1 44.379 44.379 2;3 0.002525 12012 TMT1-3 136.27 97.05 2426.2 4364.2 2774.4 2538.5 3325.6 3965.5 2297 4299 2922 2531 3421 3809 5 5 5 5 5 5 549180 7711 641 7643 12076;12077;12078;12079 15670;15671;15672;15673;15674 15673 5 GTLGGLFSQILQGEDIVR Unmodified 1902.0211 0.021076378 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6;Q9BZZ5-1;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 8 0 1 87.51 87.51 3 1.196E-14 28205 TMT1-7 126.42 120.1 61.738 56.963 35.034 43.832 57.34 68.72 58 58 36 43 59 66 2 2 1 2 2 2 20818 7712 2591 7644 12080 15675;15676 15676 2 GTLLALER Unmodified 871.51272 0.51271674 554 P07996 THBS1 Thrombospondin-1 yes yes 0 0 0 0 0 4.67 2.62 1 1 1 51.19 51.19 2 1.9E-05 14453 TMT1-5 164.77 80.677 5136.6 7604.9 5789.7 4602.3 8110.6 7155.9 4855 7564 5986 4666 8191 6930 4 4 4 4 4 4 1323300 7713 554 7645 12081;12082;12083 15677;15678;15679;15680 15679 4 GTLLALERK Unmodified 999.60768 0.60767976 554 P07996 THBS1 Thrombospondin-1 yes yes 0 0 0 0 1 8 0 1 47.081 47.081 3 0.0014986 12448 TMT1-7 64.841 31.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7714 554 7646 12084 15681 15681 1 GTLSDEHAGVISVLAQQAAK Unmodified 1994.0433 0.043268383 177 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 0 7 0 1 59.449 59.449 3 1.4792E-05 17276 TMT1-6 74.505 55.673 69.214 56.35 41.571 51.785 78.706 75.572 65 58 44 51 80 73 1 1 1 1 1 1 10997 7715 177 7647 12085 15682 15682 1 GTLSGWILSK Unmodified 1060.5917 0.59169534 920 P27824-2;P27824 CANX Calnexin yes no 0 0 0 0 0 9 0 1 67.221 67.221 2 1.9749E-06 18538 TMT1-8 147.95 74.016 626.06 1079.8 985.08 747.54 891.84 991.52 594 1070 1004 753 918 954 2 2 2 2 2 2 250290 7716 920 7648 12086 15683;15684 15683 2 GTLTEAFPVLGGK Unmodified 1288.7027 0.70270235 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 8 0 2 68.084 68.084 2;3 2.1822E-11 20682 TMT1-7 152.07 112.36 238.51 305.64 231.04 179.92 278.16 309.73 225 306 239 182 284 298 3 3 3 3 3 3 28205 7717 934 7649 12087;12088 15685;15686;15687 15685 3 GTLVQTK Unmodified 745.4334 0.43340378 630;745;743;744 P10412;Q02539;P16401;P16402;P16403 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 0 0 0 0 0 7 0 1 38.282 38.282 2 0.0021247 8943 TMT1-6 143.61 57.797 1252.6 1652.6 1233.3 1473.1 2325.8 694.76 1182 1652 1298 1455 2311 714 2 2 2 2 2 2 260360 7718 630;743;744;745 7650 12089 15688;15689 15689 2 GTLYIVEQIPTYVEYSEQTDVLR Unmodified 2715.3643 0.36432775 2032 Q6P4A8 PLBD1 Phospholipase B-like 1;Phospholipase B-like 1 chain A;Phospholipase B-like 1 chain B;Phospholipase B-like 1 chain C yes yes 0 0 0 0 0 5 0 2 85.752 85.752 3;4 1.3772E-06 27986 TMT1-4 74.584 61.797 15.857 68.189 57.751 43.004 87.501 44.407 15 66 59 44 87 44 1 3 3 3 3 3 8129.1 7719 2032 7651 12090;12091 15690;15691;15692 15690 3 GTMTTGHNVADLVVILK Unmodified 1767.9553 0.955305 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 8 0 1 64.971 64.971 3 0.0027843 19510 TMT1-7 54.368 33.705 68.593 140.97 74.14 81.178 98.007 144.31 65 138 80 80 102 138 1 1 1 1 1 1 6099.8 7720 1654 7652 12092 15693 15693 1 GTNESLER Unmodified 904.42502 0.42502394 575 P08670;P14136-2;P14136;P14136-3 VIM;GFAP Vimentin;Glial fibrillary acidic protein yes no 0 0 0 0 0 2 0.816 1 1 1 25.883 25.883 2 0.0044815 5437 TMT1-1 124.74 43.553 316.66 511.5 267.42 315.95 427.45 440.85 299 505 290 311 437 425 4 4 4 4 4 4 88203 7721 575 7653 12093;12094;12095 15694;15695;15696;15697 15695 4 GTNTVLQNNVVAGFGR Unmodified 1645.8536 0.85361712 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 8 0 1 55.904 55.904 3 0.0064907 15940 TMT1-7 38.977 22.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7722 2121 7654 12096 15698 15698 1 GTPLISPLIK Unmodified 1037.6485 0.64848194 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 63.128 63.128 3 0.0032375 16934 TMT1-8 70.028 37.708 77.286 116.94 76.251 65.174 70.504 83.268 73 116 80 65 73 80 1 1 1 1 1 1 8551.5 7723 1176 7655 12097 15699 15699 1 GTPPGVYIK Unmodified 930.51747 0.51746776 818 P20718;P20718-2;P20718-3 GZMH Granzyme H yes no 0 0 0 0 0 7 0 1 47.66 47.66 3 0.0087248 12626 TMT1-6 67.993 44.436 99.519 153.42 95.665 112.07 72.489 175.95 94 152 102 109 80 167 1 1 1 1 1 1 6502.9 7724 818 7656 12098 15700 15700 1 GTPQDLAR Unmodified 856.44028 0.44028008 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.67 1.6 1 2 1 1 1 31.74 31.74 2 5.2398E-05 8098 TMT1-2 160.26 102.81 3298 3936.6 3769 3277.5 3767.3 4674.6 3113 3968 3852 3269 3899 4486 6 6 6 6 6 6 907270 7725 3010 7657 12099;12100;12101;12102;12103;12104 15701;15702;15703;15704;15705;15706;15707 15703 7 GTPQQIDYAR Unmodified 1147.5622 0.56218613 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 3 0 1 36.516 36.516 2 3.3534E-06 9918 TMT1-2 155.57 105.45 138.46 207.94 177.64 112.85 178.2 172.94 131 207 181 116 181 167 1 1 1 1 1 1 31985 7726 2361 7658 12105 15708 15708 1 GTPWEGGLFK Unmodified 1090.5447 0.54474515 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 0 7.5 0.5 1 1 63.197 63.197 2 0.00047092 18729 TMT1-6 116.3 75.116 253.72 432.68 271.72 332.68 453.64 386.81 240 427 290 327 461 375 2 2 2 2 2 2 65937 7727 1480 7659 12106;12107 15709;15710 15709 2 GTQACITAASAVSGIIADLDTTIMFATAGTLNR Unmodified 3310.6537 0.65372661 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 8.5 0.5 1 1 114.82 114.82 4 1.9724E-14 34317 TMT1-7 87.357 77.56 14.937 14.588 21.848 22.577 8.8896 28.528 14 15 22 22 10 27 4 6 6 6 5 6 14064 7728 3010 7660 12108;12109 15711;15712;15713;15714;15715;15716 15713 6 GTQALYSWPYHFLR Unmodified 1737.8627 0.86272524 2080 Q7L591;Q7L591-3;Q7L591-2;Q7L591-4 DOK3 Docking protein 3 yes no 0 0 0 0 0 9 0 1 64.965 64.965 3 0.005237 17670 TMT1-8 53.403 32.174 84.855 85.287 93.292 64.453 54.832 83.715 80 87 94 65 58 80 1 1 1 1 1 1 12918 7729 2080 7661 12110 15717 15717 1 GTQGATAGASSELDASK Unmodified 1549.722 0.72199382 323 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 0 4 0 1 39.958 39.958 3 3.4473E-08 10245 TMT1-3 102.89 63.629 68.967 110.71 36.879 83.932 69.642 83.293 65 109 44 80 73 80 1 1 1 1 1 1 7763.9 7730 323 7662 12111 15718 15718 1 GTQGVVTNFEIFR Unmodified 1466.7518 0.75177781 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 7 0 1 63.985 63.985 2 1.1397E-12 19041 TMT1-6 160.38 122.02 61.293 94.579 78.019 57.411 70.861 83.258 58 94 80 58 73 80 1 1 1 1 1 1 20495 7731 1328 7663 12112 15719 15719 1 GTQLENVALHALLLCEGLFDPYQTWR Unmodified 3043.5226 0.5225765 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8 0 1 92.306 92.306 4 0.00015127 29850 TMT1-7 52.707 46.612 0 23.038 22.14 6.3315 0 15.99 0 22 22 7 0 15 0 1 1 1 0 1 2524.6 7732 2061 7664 12113 15720 15720 1 GTQTETEVELK Unmodified 1233.6089 0.60886155 1926 Q32P44-2;Q32P44;Q32P44-3 EML3 Echinoderm microtubule-associated protein-like 3 yes no 0 0 0 0 0 2 0 1 44.036 44.036 3 0.0053738 12584 TMT1-1 66.953 21.594 46.623 50.175 56.537 66.759 48.716 45.514 44 51 58 65 51 44 1 1 1 1 1 1 4977.9 7733 1926 7665 12114 15721 15721 1 GTQVVGSDMTVTVQFTNPLK Oxidation (M) 2137.0725 0.072519601 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 6 0 1 66.148 66.148 3 0.01508 20472 TMT1-5 46.578 34.45 38.365 27.925 20.595 30.087 20.332 37.796 36 29 22 29 22 36 1 1 1 1 1 1 9678.3 7734 393 7666 12115 15722 15722 35 1 GTSFDAAATSGGSASSEK Unmodified 1629.7118 0.71182307 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 4 0 1 41.083 41.083 3 0.00010001 10740 TMT1-3 73.918 55.085 107.48 200.75 159.84 185.59 144.46 174.97 102 198 167 181 152 168 1 1 1 1 1 1 31204 7735 693 7668 12116 15723 15723 1 GTSQNDPNWVVR Unmodified 1371.6531 0.6531264 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.43 2.19 1 1 1 1 2 1 42.504 42.504 2;3 5.829E-121 10953 TMT1-4 292.2 241.75 1141.2 1649.3 1567.4 1400.2 1773.1 1657.1 1080 1647 1603 1397 1811 1602 10 10 10 10 10 10 549500 + 7736 32;554 7669 12117;12118;12119;12120;12121;12122;12123 15724;15725;15726;15727;15728;15729;15730;15731;15732;15733 15727 10 GTTAVLTEK Unmodified 918.50221 0.50221163 2462 Q99436 PSMB7 Proteasome subunit beta type-7 yes yes 0 0 0 0 0 5.33 0.471 2 1 42.489 42.489 2;3 0.0003479 11113 TMT1-5 108.57 81.44 259.81 434.5 329.31 275.43 351.37 365.21 246 430 341 276 360 352 2 2 2 2 2 2 25991 7737 2462 7670 12124;12125;12126 15734;15735;15736 15736 3 GTTGTQASFLQLFEGDDHKVEQLDK Unmodified 2763.3352 0.33515289 964 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 0 1 6 0 2 66.998 66.998 4;5 1.2765E-24 20838 TMT1-5 124.21 105.16 192.22 177.62 183.65 207.05 264.4 217.38 181 182 189 204 269 211 3 3 3 3 3 3 22657 7738 964 7671 12127;12128 15737;15738;15739 15737 3 GTTITLVLK Unmodified 944.59063 0.59063271 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 9 0 1 60.16 60.16 2 0.00020975 15729 TMT1-8 141.2 58.891 468.59 622.18 607.58 383.38 587.44 565.27 443 624 614 394 597 546 1 1 1 1 1 1 191980 7739 708 7672 12129 15740 15740 1 GTTITLVLKEEASDYLELDTIK Unmodified 2451.2996 0.29960223 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 6 0 1 84.651 84.651 4 8.9544E-05 27597 TMT1-5 63.056 41.855 131.65 167.24 94.002 127.16 89.113 128.58 124 167 102 123 95 123 3 3 3 3 3 3 4012.4 7740 708 7673 12130 15741;15742;15743 15741 3 GTVAYVGATLFATGK Unmodified 1454.7769 0.77692993 1762 Q14203-3;Q14203-4;Q14203-6;Q14203 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 9 0 1 68.647 68.647 2 2.0048E-10 19191 TMT1-8 116.51 80.567 38.323 36.442 20.424 22.445 20.39 46.322 36 37 22 22 22 44 1 1 1 1 1 1 5906.6 7741 1762 7674 12131 15744 15744 1 GTVDCVQAR Unmodified 1004.4709 0.47092828 1946 Q53EL6-2;Q53EL6 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 0 3 0 1 29.506 29.506 2 0.0008423 7120 TMT1-2 128 78.551 37.964 74.3 48.566 44.144 56.023 76.219 36 73 51 44 58 73 1 1 1 1 1 1 8237.1 7742 1946 7675 12132 15745 15745 1 GTVDPENEFASMWIER Unmodified 1879.8411 0.8410631 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 4 0 1 73.763 73.763 3 0.0027101 23603 TMT1-3 59.502 44.116 39.255 27.345 51.703 36.835 27.864 22.657 37 29 51 37 29 22 1 1 1 1 1 1 3611.9 7743 2305 7676 12133 15746 15746 1 GTVEPQLEAR Unmodified 1098.5669 0.56693715 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.4 1.85 1 1 1 1 1 38.294 38.294 2 2.4321E-14 10568 TMT1-2 187.55 150.39 3422.7 4125.5 3737.6 2791.8 3771.8 4552.9 3230 4153 3814 2823 3878 4372 6 6 6 6 6 6 1077300 7744 831 7677 12134;12135;12136;12137;12138 15747;15748;15749;15750;15751;15752;15753 15750 7 GTVGSILDR Unmodified 916.49779 0.49779495 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 5 0 1 45.927 45.927 2 0.0013226 12396 TMT1-4 81.642 37.526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7745 1383 7678 12139 15754 15754 1 GTVIIIANHGDR Unmodified 1264.6888 0.68878362 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6 0 1 39.074 39.074 3 8.4339E-09 9780 TMT1-5 131.69 100.51 107.84 129.44 159.72 114.32 156.7 157.56 102 131 160 116 160 152 1 1 1 1 1 1 48439 7746 1910 7679 12140 15755 15755 1 GTVPDDAVEALADSLGK Unmodified 1656.8206 0.82064524 819 P20810-8;P20810-2;P20810;P20810-5;P20810-10;P20810-6;P20810-3;P20810-4;P20810-9;P20810-7 CAST Calpastatin yes no 0 0 0 0 0 4 0 1 78.032 78.032 3 0.00075783 25329 TMT1-3 65.107 45 84.493 124.22 121.04 117.76 96.325 144.36 80 124 124 116 102 138 2 2 2 2 2 2 9218.5 7747 819 7680 12141 15756;15757 15757 2 GTVQALHATGAR Unmodified 1180.6313 0.63126874 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 7.5 1.5 1 1 29.468 29.468 3 7.269E-05 5975 TMT1-5 77.894 28.179 19.016 29.151 25.314 21.85 36.526 34.136 18 29 26 22 37 33 2 2 2 2 2 2 1599.1 7748 2098 7681 12142;12143 15758;15759;15760 15758 3 GTVRPANDFNPDADAK Unmodified 1686.7962 0.79616182 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 4.33 0.471 2 1 39.74 39.74 3;4 3.5381E-11 10197 TMT1-3 117.2 81.439 609.47 873.94 700.22 644.69 637.99 784.49 576 871 725 639 664 753 4 4 4 4 4 4 132200 7749 555 7682 12144;12145;12146 15761;15762;15763;15764 15761 4 GTVTDFPGFDER Unmodified 1339.6044 0.60444487 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 4 0 1 57.205 57.205 2 1.5429E-18 17159 TMT1-3 186.87 129.32 374.51 512.88 460.73 364.28 499.52 592.3 354 513 471 367 513 569 2 2 2 2 2 2 163370 7750 578 7683 12147 15765;15766 15766 2 GTVVAEK Unmodified 702.3912 0.39120462 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 5 0 1 34.948 34.948 2 0.010017 8012 TMT1-4 109.86 28.079 153.19 209.35 225.21 183.01 248.82 154.93 145 210 228 184 251 152 1 1 1 1 1 1 12354 7751 971 7684 12148 15767 15767 1 GTVVTGTLER Unmodified 1031.5611 0.56112349 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 39.63 39.63 2 4.2593E-19 9832 TMT1-4 158.57 140.23 161.13 219.74 144.27 139.04 169.93 165.71 152 219 152 138 174 160 1 1 1 1 1 1 43166 7752 1180 7685 12149;12150 15768;15769 15769 2 GTWVQLK Unmodified 830.46504 0.46503826 1133 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 0 0 9 0 1 53.29 53.29 2 0.012013 13090 TMT1-8 114.6 54.012 242.12 425.4 244.6 321.16 338.55 342.12 229 419 264 313 349 330 1 1 1 1 1 1 35061 7753 1133 7686 12151 15770 15770 1 GTYDILVTK Unmodified 1008.5492 0.54916182 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 6 0 1 56.659 56.659 2 0.0080684 16778 TMT1-5 91.584 28.098 107.61 160.1 172.39 128.7 223.8 164.17 102 160 174 131 225 160 1 1 1 1 1 1 13378 7754 695 7687 12152 15771 15771 1 GTYFPTWEGLFWEK Unmodified 1759.8246 0.8246084 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 85.468 85.468 3 4.6463E-05 27426 TMT1-7 89.992 65.568 69.021 79.559 54.27 75.528 54.58 76.261 65 80 58 73 58 73 1 1 1 1 1 1 8778.2 7755 2028 7688 12153 15772 15772 1 GTYIPVPIVSELQSGK Unmodified 1686.9192 0.91923707 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 6.57 2.32 1 3 3 73.601 73.601 2;3;4 5.264E-35 22813 TMT1-6 194.39 182.53 1357.9 1882.9 1739.3 1305.2 1799.5 2049.7 1284 1883 1772 1320 1845 1971 12 12 12 12 12 12 1001700 7756 393 7689 12154;12155;12156;12157;12158;12159;12160 15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784 15776 12 GTYQGLTATVLK Unmodified 1250.6871 0.68705229 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 57.131 57.131 3 4.7391E-05 16316 TMT1-6 102.33 89.777 107.91 176.05 108.43 134.19 134.32 112.36 102 174 116 131 138 109 1 1 1 1 1 1 11961 7757 1280 7690 12161 15785 15785 1 GVAALTSDPAVQAIVLDTASDVLDK Unmodified 2468.301 0.30099921 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.57 2.06 2 2 6 2 2 92.595 92.595 3;4;5 1.7334E-52 31097 TMT1-4 177.87 156.47 3146.8 3494.4 3462.9 2722.4 3277.8 3679 2968 3538 3521 2736 3374 3539 24 25 25 25 25 25 1346100 7758 3010 7691 12162;12163;12164;12165;12166;12167;12168;12169;12170;12171;12172;12173;12174;12175 15786;15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813 15789 28 GVAALTSDPAVQAIVLDTASDVLDKASSLIEEAK Unmodified 3396.7876 0.78756078 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7.67 0.471 1 2 111.41 111.41 4;5 1.1344E-39 34077 TMT1-6 120.91 111.11 29.748 37.056 18.306 21.564 15.826 38.99 28 37 20 21 17 37 5 5 5 5 4 5 4796.5 7759 3010 7692 12176;12177;12178 15814;15815;15816;15817;15818 15814 5 GVAALTSDPAVQAIVLDTASDVLDKASSLIEEAKK Unmodified 3524.8825 0.8825238 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 2 9 0 1 105.07 105.07 5 0.0013997 32838 TMT1-8 41.483 36.769 15.932 14.635 14.989 6.3451 21.937 22.826 15 15 15 7 22 22 1 1 1 1 1 1 1896.4 7760 3010 7693 12179 15819 15819 1 GVAEQQQQQGCGDPEVMQK Unmodified 2115.9314 0.93135145 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 3 0 1 43.052 43.052 3 1.5584E-17 12523 TMT1-2 122.29 107.68 69.163 56.208 50.249 27.215 79.066 97.948 65 58 51 29 80 94 1 1 1 1 1 1 18712 7761 1684 7694 12180 15820 15820 1 GVAIGQTSLTASVTNK Unmodified 1545.8362 0.83623572 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 8 0 1 54.881 54.881 3 2.7345E-05 15527 TMT1-7 82.837 51.198 61.314 79.527 87.228 40.985 101.47 97.309 58 80 87 44 102 94 1 1 1 1 1 1 10379 7762 2259 7695 12181 15821 15821 1 GVAPLWMR Unmodified 928.49529 0.49529253 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 9 0 1 56.255 56.255 2 9.0285E-05 14214 TMT1-8 159.75 118.52 200.33 299.82 160.31 152.47 218.73 249.6 189 297 172 152 224 240 1 1 1 1 1 1 30049 7763 1537 7696 12182 15822 15822 1 GVDDLDFFIGDEAIEKPTYATK Unmodified 2443.1795 0.17948709 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 5.5 0.5 2 2 74.858 74.858 3;4 7.1777E-46 23739 TMT1-4 162.85 143.13 841.53 1112 991.66 799.32 1081.9 1328.3 795 1114 1015 804 1113 1275 5 5 5 5 5 5 401740 7764 1379 7697 12183;12184;12185;12186 15823;15824;15825;15826;15827 15825 5 GVDEATIIDILTK Unmodified 1386.7606 0.76061116 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 5.5 0.5 1 1 82.959 82.959 3 3.4878E-13 27123 TMT1-5 156.36 114.28 1123.2 2049.4 1189.7 1397.8 1469.8 1933.4 1063 2016 1276 1369 1530 1853 5 5 5 5 5 5 202870 7765 461 7698 12187;12188 15828;15829;15830;15831;15832 15831 5 GVDEATIIDILTKR Unmodified 1542.8617 0.86172219 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 7 0 2 74.31 74.31 3 7.1432E-09 23058 TMT1-6 102.5 78.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7766 461 7699 12189;12190 15833;15834 15833 2 GVDEVTIVNILTNR Unmodified 1541.8413 0.8413211 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 0 6.33 0.471 2 1 75.682 75.682 2;3 2.1099E-27 24302 TMT1-5 180.28 128.73 208.2 345.8 242.22 267.04 318.34 333.1 197 342 255 263 327 321 5 5 5 5 5 5 218540 7767 534 7700 12191;12192;12193 15835;15836;15837;15838;15839 15836 5 GVDLDQLLDMSYEQLMQLYSAR Unmodified 2587.2298 0.22982488 1448 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 0 0 0 7 0 2 105.68 105.68 3;4 0.00015584 33655 TMT1-6 58.952 55.425 8.5362 4.9698 3.828 8.4223 4.9756 6.254 8 5 4 8 5 6 2 1 1 2 1 2 1464.6 7768 1448 7701 12194;12195 15840;15841 15841 2 GVDLHEQSQQNK Unmodified 1381.6586 0.65860571 1371 P61020;P61020-2 RAB5B Ras-related protein Rab-5B yes no 0 0 0 0 0 4 0 1 32.43 32.43 3 3.3835E-06 7312 TMT1-3 114.71 98.078 53.987 80.554 55.387 50.808 86.886 51.887 51 80 58 51 87 51 1 1 1 1 1 1 7413.7 7769 1371 7702 12196 15842 15842 1 GVDLLQNLIK Unmodified 1111.6601 0.66010926 156;2911 Q9ULH1;Q9ULH1-2;O43150-2;O43150 ASAP1;ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1;Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 no no 0 0 0 0 0 8 0 1 73.962 73.962 2 7.6721E-05 23043 TMT1-7 103.88 45.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7770 2911;156 7703 12197 15843 15843 1 GVDLQENNPASR Unmodified 1298.6215 0.62149192 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 2.5 0.5 1 1 38.549 38.549 2;3 7.1352E-09 10658 TMT1-2 134.56 110.63 100.52 138.02 121.54 86.14 90.758 105.08 95 138 124 87 94 101 2 2 2 2 2 2 19399 7771 1236 7704 12198;12199 15844;15845 15845 2 GVDLVLNSLAEEK Unmodified 1385.7402 0.74021007 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 5.5 0.5 1 1 71.839 71.839 3 4.7089E-06 22743 TMT1-5 88.092 67.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7772 1176 7705 12200;12201 15846;15847 15847 2 GVDNPGPEK Unmodified 911.43486 0.43486035 3086 yes yes 0 0 0 0 0 7 0 1 51.464 51.464 2 0.0034595 14101 TMT1-6 70.919 4.6613 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7773 3086 7706 12202 15848 15848 1 GVEAGPDLLQ Unmodified 997.50803 0.50802529 227 O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 0 2.5 0.5 1 1 61.145 61.145 2 0.00013092 19392 TMT1-1 136.16 112 131.19 164.87 174.03 106.94 96.785 145.41 124 166 175 109 102 139 4 4 4 4 4 4 31475 7774 227 7707 12203;12204 15849;15850;15851;15852 15850 4 GVEGLIDIENPNR Unmodified 1424.726 0.72595699 1705 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 0 0 4 0 1 60.727 60.727 2 3.7999E-10 18487 TMT1-3 131.43 87.699 54.062 64.573 56.336 51.027 72.218 52.305 51 65 58 51 73 51 1 1 1 1 1 1 13748 7775 1705 7708 12205 15853 15853 1 GVEICIATPGR Unmodified 1171.6019 0.60194245 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 0 5 0 1 51.966 51.966 2 0.001138 14773 TMT1-4 99.788 64.636 91.835 169.64 111.02 86.493 105.35 136.64 87 167 116 87 109 131 1 1 1 1 1 1 19547 7776 764;2321 7709 12206 15854 15854 1 GVEIEEGGVK Unmodified 1015.5186 0.51858998 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 3 0 1 45.498 45.498 2 8.6667E-05 13485 TMT1-2 140.83 40.818 68.738 110.07 75.999 81.042 99.332 105.9 65 109 80 80 102 102 1 1 1 1 1 1 8466.9 7777 2288 7710 12207 15855 15855 1 GVEIEGPLSTETNWDIAHMISGFE Unmodified 2631.2163 0.21628331 925 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 0 0 0 5 0 1 91.596 91.596 3 1.264E-06 30271 TMT1-4 71.148 57.827 23.313 12.68 38.498 14.769 14.477 23.039 22 14 37 15 15 22 2 2 2 1 1 2 6593.4 7778 925 7711 12208 15856;15857 15857 2 GVEITGFPEAQALGLEVFHAGTALK Unmodified 2554.3431 0.3431388 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 7.67 0.471 1 2 82.185 82.185 3;4 2.3833E-14 26130 TMT1-6 94.542 75.822 61.43 96.041 53.671 67.635 69.329 114.22 58 95 58 66 73 109 2 2 2 2 2 2 13817 7779 842 7712 12209;12210;12211 15858;15859;15860 15858 3 GVETIANDVVSLATK Unmodified 1515.8144 0.81443765 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 6 0 1 76.967 76.967 2 1.1725E-16 24766 TMT1-5 147.7 129.83 46.661 50.282 49.961 44.199 48.691 76.429 44 51 51 44 51 73 1 1 1 1 1 1 6774.3 7780 631 7713 12212 15861 15861 1 GVEVDPSLIK Unmodified 1055.5863 0.58627561 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 5 0 1 57.741 57.741 2 0.012156 17050 TMT1-4 81.163 44.639 99.483 130.65 120.97 84.776 165.09 165.85 94 131 123 87 167 160 1 1 1 1 1 1 9427.1 7781 220 7714 12213 15862 15862 1 GVFHGIENFINEASYMSILGMTPGFGDK Unmodified 3030.4256 0.42556457 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 0 9 0 1 94.43 94.43 4 2.0571E-05 29136 TMT1-8 47.919 34.189 15.862 29.551 14.092 6.3986 21.934 22.826 15 29 15 7 22 22 1 1 1 1 1 1 2812.3 7782 387 7715 12214 15863 15863 1 GVFNSGLK Unmodified 820.4443 0.44430282 2419 Q96I99;Q96I99-2 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 48.756 48.756 2 0.0068366 11321 TMT1-8 100.02 57.017 207.97 213.31 212.52 213.57 233.51 224.66 196 217 218 211 240 217 2 2 2 2 2 2 17692 7783 2419 7716 12215;12216 15864;15865 15865 2 GVFPDNFVK Unmodified 1021.5233 0.52328142 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 7 0 1 60.682 60.682 2 0.0006827 17713 TMT1-6 130.96 54.065 99.244 183.95 115.98 125.03 132.62 174.24 94 181 123 123 138 167 1 1 1 1 1 1 26047 7784 2369 7717 12217 15866 15866 1 GVFPVSFVHILSD Unmodified 1415.7449 0.74490152 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 81.989 81.989 2 0.010809 24351 TMT1-8 63.159 37.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7785 2911 7718 12218 15867 15867 1 GVFSFEAGR Unmodified 968.47158 0.4715802 2080 Q7L591 DOK3 Docking protein 3 yes yes 0 0 0 0 0 7 0 1 53.414 53.414 2 0.0065454 14818 TMT1-6 94.806 66.71 176.01 323.19 260.66 202.8 188.2 218.49 167 319 268 203 196 210 2 2 2 2 2 2 36144 7786 2080 7719 12219 15868;15869 15868 2 GVFVQSVLPYFVATK Unmodified 1653.913 0.91302948 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 0 9 0 2 82.179 82.179 2;3 6.183E-12 24405 TMT1-8 122.46 87.927 68.417 109.18 130.69 93.361 84.621 91.393 65 109 131 94 88 88 2 2 2 2 2 2 41150 7787 1948 7720 12220;12221 15870;15871 15870 2 GVFVVAAK Unmodified 789.47487 0.47487467 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 9 0 1 53.013 53.013 2 0.0028216 13036 TMT1-8 132.94 97.061 300.66 325.97 227.83 241.87 365.42 396.78 283 329 240 240 373 382 2 2 2 2 2 2 36374 7788 1102 7721 12222 15872;15873 15873 2 GVGAAATAVTQALNELLQHVK Unmodified 2090.1484 0.14840216 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.75 3.34 1 1 2 92.219 92.219 3;4 2.007E-75 28017 TMT1-8 212.69 184.6 2040.7 2665.1 2473.3 1773.1 2410.8 2842.9 1928 2673 2515 1798 2476 2731 7 9 8 8 9 8 1068700 7789 3010 7722 12223;12224;12225;12226 15874;15875;15876;15877;15878;15879;15880;15881;15882 15879 9 GVGCLDFSK Unmodified 981.45897 0.45896661 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 7 0 1 54.236 54.236 2 0.0020422 15219 TMT1-6 107.57 68.553 84.763 116.33 82.433 96.402 75.885 98.039 80 116 87 94 80 94 1 1 1 1 1 1 8098.2 7790 2687 7723 12227 15883 15883 1 GVGDGTVSWGLEDDEDMTLTR Unmodified 2251.9903 0.99030611 1697;1877 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 0 3 0 1 69.175 69.175 3 9.7388E-14 22799 TMT1-2 105.52 91.477 15.735 29.196 35.828 29.026 28.479 15.177 15 29 36 29 29 15 1 1 1 1 1 1 10320 7791 1697;1877 7724 12228 15884 15884 1 GVGIISEGNETVEDIAAR Unmodified 1828.9167 0.91667089 481 P05023-3;P05023-4;P05023;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 2.5 0.5 1 1 61.54 61.54 3 1.2137E-30 19446 TMT1-1 172.91 133.18 69.71 133.46 73.121 114.05 97.009 129.42 66 131 80 110 102 124 3 3 3 3 3 3 32864 7792 481 7725 12229;12230 15885;15886;15887 15885 3 GVGQAAIR Unmodified 770.43989 0.43988615 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.5 0.5 1 1 30.843 30.843 2 0.0011167 6421 TMT1-4 144.9 57.966 1648.7 1861.9 1755 1411.6 1846.2 1979.1 1555 1882 1791 1419 1892 1906 3 3 3 3 3 3 247370 7793 776 7726 12231;12232 15888;15889;15890 15888 3 GVGTDEACLIEILASR Unmodified 1702.856 0.85598488 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 5.33 0.471 2 1 77.205 77.205 2;3 2.1027E-24 24733 TMT1-4 144.68 116.82 46.551 65.085 55.994 58.858 63.738 45.085 44 65 58 58 65 44 1 1 1 1 1 1 18994 7794 1234 7727 12233;12234;12235 15891;15892;15893 15892 3 GVHFIFNK Unmodified 960.51814 0.51813647 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 9 0 1 50.997 50.997 3 0.0013349 12136 TMT1-8 92.925 52.352 129.67 272.73 156.43 162.66 153.92 173.63 123 267 167 160 160 167 1 1 1 1 1 1 49542 7795 477 7728 12236 15894 15894 1 GVHGSFLAR Unmodified 942.50355 0.50354903 936 P29350;P29350-3;P29350-4 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 7.5 0.5 1 1 33.638 33.638 3 0.00011142 7069 TMT1-7 133.98 77.256 168.09 368.98 290.22 231.46 256.03 337.01 160 362 299 232 266 323 2 2 2 2 2 2 45107 7796 936 7729 12237;12238 15895;15896 15896 2 GVIDLAALGITGR Unmodified 1254.7296 0.7295858 2473 Q99570 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 yes yes 0 0 0 0 0 8 0 1 73.423 73.423 2 1.5914E-07 22831 TMT1-7 100.93 57.685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7797 2473 7730 12239 15897 15897 1 GVIDLIFEK Unmodified 1032.5855 0.58554733 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 7 0 1 78.366 78.366 2 0.031944 24707 TMT1-6 73.233 35.758 46.516 81.179 48.103 44.304 48.979 67.892 44 80 51 44 51 65 1 1 1 1 1 1 5954.3 7798 1584 7731 12240 15898 15898 1 GVIEEPK Unmodified 770.41742 0.41741937 2767 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog yes yes 0 0 0 0 0 4 0 1 40.098 40.098 2 0.011136 10374 TMT1-3 105.12 45.911 46.195 80.286 102.85 55.383 99.999 120.8 44 80 102 58 102 116 1 1 1 1 1 1 4640.7 7799 2767 7732 12241 15899 15899 1 GVIFGQTSSTFTFADLAK Unmodified 1888.9571 0.95707914 1204 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 0 9 0 1 77.849 77.849 3 1.2158E-11 22750 TMT1-8 94.882 75.043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7800 1204 7733 12242 15900 15900 1 GVIFTEAFVAR Unmodified 1208.6554 0.65535823 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 8 0 1 65.374 65.374 2 0.00028341 19660 TMT1-7 81.338 38.091 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7801 327 7734 12243 15901 15901 1 GVIINTASVAAFEGQVGQAAYSASK Unmodified 2438.2442 0.24415304 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 7.5 0.5 1 1 75.271 75.271 4 4.0842E-19 23524 TMT1-7 104.97 92.418 177.16 217.37 157.46 208.65 204.15 203.11 167 218 167 203 211 196 3 3 3 3 3 3 29233 7802 2485 7735 12244;12245 15902;15903;15904 15903 3 GVIQAIQK Unmodified 855.5178 0.51780212 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 8 0 1 48.216 48.216 2 3.9049E-05 12880 TMT1-7 162.07 64.996 209.56 198.68 317.45 233.61 346.38 322.71 198 205 315 237 352 312 1 1 1 1 1 1 41993 7803 2708;2709 7736 12246 15905 15905 1 GVISTPVIR Unmodified 940.57057 0.57056597 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 8 0 1 49.863 49.863 2 0.013516 13521 TMT1-7 84.097 30.343 107.7 193.79 129.82 164.53 138.94 150.61 102 191 138 160 145 145 1 1 1 1 1 1 16109 7804 2795 7737 12247 15906 15906 1 GVLFGVPGAFTPGCSK Unmodified 1592.8021 0.80209882 947 P30044-2;P30044;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 9 0 2 70.576 70.576 2;3 8.9402E-20 19871 TMT1-8 136.6 107.26 311.67 256.94 239.32 172.77 283.82 276.52 293 265 244 176 288 267 2 2 2 2 2 2 91127 7805 947 7738 12248;12249 15907;15908 15907 2 GVLFYGPPGCGK Unmodified 1250.6118 0.61177885 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 9 0 2 58.648 58.648 2;3 6.2193E-11 15267 TMT1-8 149.65 112.09 508.49 529.18 472.38 381.58 356.15 601.72 479 537 484 381 377 574 3 3 3 3 3 3 127410 7806 1311 7739 12250;12251 15909;15910;15911 15911 3 GVLKVFLENVIR Unmodified 1385.8395 0.83947061 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 9 0 1 77.464 77.464 3 0.027242 22551 TMT1-8 46.481 24.435 92.424 77.38 90.207 143.51 103.79 105.77 87 80 94 138 109 102 1 1 1 1 1 1 20430 7807 1443 7740 12252 15912 15912 1 GVLLDIDDLQTNQFK Unmodified 1717.8887 0.88866522 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 74.978 74.978 3 1.4686E-18 24025 TMT1-5 154.47 110.66 154.68 171.58 186.98 144.6 145.87 188.78 146 174 189 145 152 181 2 2 2 2 2 2 40157 7808 1723 7741 12253 15913;15914 15914 2 GVLLEIEDLQVNQFK Unmodified 1743.9407 0.94070079 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 6 0 2 80.886 80.886 3;4 9.4855E-12 26260 TMT1-5 128.9 96.626 84.575 147.11 87.862 103.12 166.41 102.92 80 145 94 102 167 101 2 2 2 2 2 2 25525 7809 1139 7742 12254;12255 15915;15916 15915 2 GVLLFGPPGTGK Unmodified 1141.6495 0.64954457 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 9 0 2 64.862 64.862 2;3 9.3302E-05 17658 TMT1-8 98.943 42.38 138.35 211.97 191.96 150.42 227.49 240.82 131 211 196 152 232 232 2 2 2 2 2 2 26303 7810 1033 7743 12256;12257 15917;15918 15917 2 GVLLYGPPGTGK Unmodified 1157.6445 0.64445919 1416 P62195;P62195-2;Q8NB90-3;Q8NB90-2;Q8NB90 PSMC5;SPATA5 26S protease regulatory subunit 8;Spermatogenesis-associated protein 5 yes no 0 0 0 0 0 8.5 0.5 1 1 56.326 56.326 2;3 3.5428E-07 14565 TMT1-8 126.39 0 146.22 196.25 145.79 138.38 200.32 164.84 138 196 152 138 203 160 2 2 2 2 2 2 18029 7811 1416 7744 12258;12259 15919;15920 15920 2 GVLPYVGNLITK Unmodified 1272.7442 0.74417324 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 72.251 72.251 3 0.00013317 20567 TMT1-8 92.611 68.624 68.76 102.58 78.569 33.449 64.65 52.521 65 102 80 36 65 51 1 1 1 1 1 1 5217 7812 1977 7745 12260 15921 15921 1 GVLQGHLESSR Unmodified 1181.6153 0.61528433 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 5.83 1.34 1 2 1 1 1 34.038 34.038 2;3 2.3589E-24 7152 TMT1-7 201.46 157.15 594.22 745.69 668.52 656.42 696.37 774.3 561 749 689 649 720 745 6 6 6 6 6 6 369510 7813 535 7746 12261;12262;12263;12264;12265;12266 15922;15923;15924;15925;15926;15927 15927 6 GVLQSQSFSGMTVLQR Unmodified 1736.888 0.88795372 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 61.549 61.549 3 3.8056E-08 16295 TMT1-8 102.55 74.006 115.18 159.73 163.97 147.32 132.11 159.33 109 160 167 146 138 153 2 2 2 2 2 2 42484 7814 1067 7747 12267 15928;15929 15928 2 GVLTLSFALADK Unmodified 1233.6969 0.69688869 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 0 9 0 1 75.505 75.505 3 1.4981E-05 21803 TMT1-8 98.156 71.558 99.582 138.48 97.684 86.855 128.37 135.98 94 138 102 87 131 131 1 1 1 1 1 1 21860 7815 2407 7748 12268 15930 15930 1 GVLVCDECCSVHR Unmodified 1589.6749 0.67486617 2978 Q9Y2X7-3;Q9Y2X7;Q9Y2X7-2 GIT1 ARF GTPase-activating protein GIT1 yes no 0 0 0 0 0 4 0 1 36.963 36.963 3 0.017211 9127 TMT1-3 51.726 38.047 38.008 65.788 48.42 58.886 86.258 59.367 36 65 51 58 87 58 1 1 1 1 1 1 3551.6 7816 2978 7749 12269 15931 15931 1 GVLVFLEQALIQYALR Unmodified 1832.056 0.056005322 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 110.51 110.51 3 0.0001361 34253 TMT1-8 67.234 54.357 0 7.3287 7.1343 0 4.184 0 0 7 7 0 4 0 0 1 1 0 1 0 516.94 7817 1186 7750 12270 15932 15932 1 GVMLAVDAVIAELK Unmodified 1427.8058 0.80578722 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 96.272 96.272 3 1.6836E-08 31418 TMT1-7 116.24 84.848 108.26 90.673 122.2 110.07 94.773 199.84 102 94 123 109 102 190 4 4 4 4 4 4 12540 7818 638 7751 12271;12272 15933;15934;15935;15936 15936 4 GVMLAVDAVIAELKK Unmodified 1555.9008 0.90075023 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 88.192 88.192 3 3.0006E-31 26767 TMT1-8 183.81 157.68 331.7 325.78 241.65 195.66 221.25 392.37 312 331 251 196 233 374 2 2 2 2 2 2 24876 7819 638 7752 12273 15937;15938 15938 2 GVNAIVYMIDAADREK Unmodified 1763.8876 0.88761936 2762 Q9NVJ2;Q9NVJ2-2 ARL8B ADP-ribosylation factor-like protein 8B yes no 0 0 0 0 1 6 0 1 71.992 71.992 3 2.1528E-06 22831 TMT1-5 95.654 59.262 115.91 130.47 65.856 105.9 88.494 144.58 109 131 73 102 94 138 1 1 1 1 1 1 14033 7820 2762 7753 12274 15939 15939 1 GVNLPGAAVDLPAVSEK Unmodified 1635.8832 0.88318591 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 4.5 2.06 1 1 2 65.811 65.811 2;3;4 3.0046E-19 20268 TMT1-5 141.46 90.372 246.43 413.47 431.48 246.36 352.96 418.46 234 411 433 255 362 402 4 4 4 4 4 4 72585 7821 706;707 7754 12275;12276;12277;12278 15940;15941;15942;15943;15944 15942 5 GVNLPGAAVDLPAVSEKDIQDLK Unmodified 2348.2587 0.25874047 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 6 0 2 70.698 70.698 3;4 7.1793E-18 22270 TMT1-5 114.04 102.08 363.71 521.85 285.88 246.56 339.03 397.54 343 518 305 247 348 382 2 2 2 2 2 2 146840 7822 706;707 7755 12279;12280 15945;15946 15945 2 GVNLQEFLNVTSVHLFK Unmodified 1944.0469 0.046897198 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 9 0 1 80.737 80.737 3 2.2853E-40 23879 TMT1-8 173.03 144.4 798.16 945.13 1027.2 643.18 960.86 1009.8 754 955 1032 661 980 973 3 3 3 3 3 3 340290 7823 393 7756 12281 15947;15948;15949 15948 3 GVNNGGEK Unmodified 773.36678 0.36678078 2550 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 0 5 0 1 32.988 32.988 3 0.037528 7290 TMT1-4 51.736 26.813 137.89 150.05 142.38 108.01 140.48 181.48 130 152 145 109 145 174 1 1 1 1 1 1 13731 7824 2550 7757 12282 15950 15950 1 GVNNSYIQR Unmodified 1049.5254 0.52540669 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 4.5 0.5 1 1 33.982 33.982 2 0.00021338 7962 TMT1-3 113.74 50.067 54.024 73.102 55.468 59.032 56.144 52.764 51 73 58 58 58 51 1 1 1 1 1 1 6832 7825 322 7758 12283;12284 15951;15952 15951 2 GVNTDSGSVCR Unmodified 1150.5037 0.50368497 674 P12955;P12955-3;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 0 2 0 1 28.845 28.845 2 0.0011131 6551 TMT1-1 69.276 31.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7826 674 7759 12285 15953 15953 1 GVNTFSPEGR Unmodified 1062.5094 0.50942227 924 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 0 0 0 5 0 1 38.846 38.846 2 0.00031787 9573 TMT1-4 123.42 90.787 277.43 241.22 236.14 172.15 210.24 257.3 261 248 240 174 217 247 2 2 2 2 2 2 28932 7827 924 7760 12286 15954;15955 15954 2 GVPELVLK Unmodified 853.5273 0.52730417 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7 0 1 59.232 59.232 2 0.0061577 17108 TMT1-6 109.01 88.73 354.47 419.17 482.41 346.27 400.49 515.18 335 424 485 350 415 494 2 2 2 2 2 2 70045 7828 856 7761 12287 15956;15957 15956 2 GVPLVYEAFNWR Unmodified 1449.7405 0.74048484 1908 Q16822;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 9 0 1 76.177 76.177 2 0.013064 22109 TMT1-8 67.207 24.871 38.109 43.404 50.407 44.428 35.1 14.988 36 44 51 44 36 15 1 1 1 1 1 1 4111.6 7829 1908 7762 12288 15958 15958 1 GVPTGFILPIR Unmodified 1168.6968 0.69682911 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 9 0 1 68.693 68.693 2 0.00025479 19126 TMT1-8 100.84 57.022 84.541 123.27 113.8 87.307 53.268 98.684 80 123 116 87 58 94 1 1 1 1 1 1 13169 7830 657 7763 12289 15959 15959 1 GVPWNFTFNVK Unmodified 1307.6663 0.66625727 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 0 9 0 1 73.14 73.14 3 0.00016494 20909 TMT1-8 92.538 71.637 77.796 55.759 42.284 35.619 64.293 59.993 73 58 44 36 65 58 1 1 1 1 1 1 9141.7 7831 643 7764 12290 15960 15960 1 GVQDIVVGEGTHFLIPWVQKPIIFDCR Unmodified 3122.6375 0.63754668 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 1 9 0 1 81.919 81.919 5 1.1059E-13 24291 TMT1-8 82.849 67.344 30.371 82.141 55.715 43.983 41.921 60.632 29 80 58 44 44 58 1 1 1 1 1 1 11471 7832 1012 7765 12291 15961 15961 1 GVQLQTHPNVDKK Unmodified 1462.7892 0.78922595 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 1 7 0 1 37.171 37.171 4 7.5618E-05 8446 TMT1-6 94.023 74.256 416.9 641.2 442.2 286.95 485.46 587.37 394 636 458 295 496 564 1 1 1 1 1 1 27158 7833 1154 7766 12292 15962 15962 1 GVQVETISPGDGR Unmodified 1313.6575 0.65754307 1462 P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 0 0 0 0 0 2.71 1.03 1 2 2 2 43.495 43.495 2;3 5.6038E-28 12782 TMT1-2 197.3 144.82 416.83 628.24 644.67 519.9 533.9 631.83 395 627 654 520 554 607 6 6 6 6 6 6 367610 7834 1462 7767 12293;12294;12295;12296;12297;12298;12299 15963;15964;15965;15966;15967;15968;15969;15970 15967 8 GVQYLNEIK Unmodified 1062.571 0.5709599 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6 0 1 53.781 53.781 2 0.00026503 15610 TMT1-5 142.92 103.9 160.89 230.96 174.34 129.15 193.82 214.07 152 230 180 131 198 206 1 1 1 1 1 1 48189 7835 685 7768 12300 15971 15971 1 GVQYLNEIKDSVVAGFQWATK Unmodified 2352.2114 0.21139634 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 9 0 1 87.426 87.426 4 3.3779E-19 26372 TMT1-8 118.52 85.217 230.89 349.03 212.28 203.5 304.74 296.18 218 346 225 203 310 286 2 2 2 2 2 2 34531 7836 685 7769 12301 15972;15973 15972 2 GVSAFSTWEK Unmodified 1110.5346 0.53457439 107 O14776;O14776-2;Q5VWI1 TCERG1;TCERG1L Transcription elongation regulator 1;Transcription elongation regulator 1-like protein yes no 0 0 0 0 0 7 0 1 57.301 57.301 2 0.023344 16443 TMT1-6 74.162 27.596 30.611 51.509 41.315 44.132 79.607 59.556 29 51 43 44 80 58 1 1 1 1 1 1 5365.6 7837 107 7770 12302 15974 15974 1 GVSAVVVGADR Unmodified 1028.5615 0.56145784 2546 Q9BV20-2;Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 0 5 0 1 42.33 42.33 2 0.028158 10998 TMT1-4 66.664 38.782 61.208 94.343 92.488 72.973 69.34 106.75 58 94 94 73 73 102 1 1 1 1 1 1 7079.2 7838 2546 7771 12303 15975 15975 1 GVSFTFGADVVSK Unmodified 1312.6663 0.66631685 1414 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 0 0 8 0 2 65.867 65.867 2;3 4.1999E-21 19826 TMT1-7 184.03 134.61 99.299 130.14 152.45 83.199 149.2 173.76 94 131 152 87 152 167 2 2 2 2 2 2 28262 7839 1414 7772 12304;12305 15976;15977 15976 2 GVSFTFGAEVVAK Unmodified 1310.6871 0.68705229 1413;1044 P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 0 8 0 1 66.223 66.223 2 0.00041419 20032 TMT1-7 94.767 78.877 54.292 33.912 43.711 35.667 57.219 52.733 51 36 44 36 58 51 1 1 1 1 1 1 7765.2 7840 1044;1413 7773 12306 15978 15978 1 GVSLFDIINPEIITR Unmodified 1685.9352 0.93522148 658 P11597-2;P11597 CETP Cholesteryl ester transfer protein yes no 0 0 0 0 0 8 0 1 87.398 87.398 3 0.00074684 28125 TMT1-7 54.812 12.027 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7841 658 7774 12307 15979 15979 1 GVSPEPIHLK Unmodified 1075.6026 0.60259438 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 2.94 1 1 1 45.23 45.23 3 1.6827E-05 11901 TMT1-5 98.943 81.617 26.423 45.614 28.957 14.217 24.056 41.954 25 45 30 15 25 40 1 1 1 1 1 1 2659.7 7842 68 7775 12308;12309;12310 15980;15981;15982 15981 3 GVSSCQQCLAVSPMCAWCSDEALPLGSPR Unmodified 3222.4025 0.40247942 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 7 0 1 72.453 72.453 4 0.000433 22449 TMT1-6 42.851 36.756 15.779 29.32 28.239 29.193 43.664 29.668 15 29 29 29 44 29 1 1 1 1 1 1 39292 7843 484 7776 12311 15983 15983 1 GVSSESSGDREK Unmodified 1236.5582 0.55822296 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 1 3 0 1 24.358 24.358 3 1.1185E-08 5119 TMT1-2 136.53 110.41 69.282 41.429 42.779 44.755 41.886 60.633 65 44 44 44 44 58 1 1 1 1 1 1 2723.9 7844 1704 7777 12312 15984 15984 1 GVTDHTQR Unmodified 912.44134 0.44134271 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 3 0 1 17.107 17.107 3 0.0064389 3126 TMT1-2 79.474 64.939 3.1761 3.9776 3.8451 5.1242 5.9366 3.0286 3 4 4 5 6 3 1 1 1 1 1 1 293.56 7845 1763 7778 12313 15985 15985 1 GVTFNVTTVDTK Unmodified 1280.6612 0.66123147 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 56.146 56.146 3 5.3765E-09 16037 TMT1-6 138.45 109.55 936.02 1183.8 1279.7 832.16 1038 1131.3 885 1192 1287 849 1066 1089 3 3 3 3 3 3 289180 7846 59 7779 12314;12315 15986;15987;15988 15988 3 GVTFNVTTVDTKR Unmodified 1436.7623 0.7623425 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 8 0 1 48.386 48.386 3 1.6109E-11 12928 TMT1-7 148.08 119.8 382.01 523.13 453.82 383.48 372.13 529.84 361 523 466 382 390 507 2 2 2 2 2 2 53469 7847 59 7780 12316 15989;15990 15989 2 GVTHNIALLR Unmodified 1092.6404 0.64037687 490 P05165-3;P05165-2;P05165 PCCA Propionyl-CoA carboxylase alpha chain, mitochondrial yes no 0 0 0 0 0 8 0 1 40.625 40.625 3 0.033822 9847 TMT1-7 49.35 21.132 84.965 101.78 60.861 65.861 82.749 152.21 80 102 65 65 87 145 1 1 1 1 1 1 5182.6 7848 490 7781 12317 15991 15991 1 GVTIASGGVLPNIHPELLAK Unmodified 1985.131 0.13096118 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 8.33 0.471 2 1 67.072 67.072 3;4 1.0949E-30 20393 TMT1-7 142.88 124.5 207.46 244.27 272.21 240.74 226.67 357.04 196 247 276 239 239 341 3 3 3 3 3 3 155390 7849 268 7782 12318;12319;12320 15992;15993;15994 15993 3 GVTIIGPATVGGIKPGCFK Unmodified 1871.0339 0.033889671 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 9 0 1 63.21 63.21 3 1.7206E-15 16983 TMT1-8 113.29 92.703 84.725 101.11 101.75 47.669 106.88 144.06 80 102 102 51 109 138 1 1 1 1 1 1 11879 7850 1283 7783 12321 15995 15995 1 GVTIPYRPKPSSSPVIFAGGQDR Unmodified 2428.2863 0.28629262 1844 Q15366-6;Q15366-3;Q15366;Q15366-2 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 2 9 0 1 51.636 51.636 4 4.707E-25 12469 TMT1-8 116.74 98.915 61.533 63.948 63.58 58.435 62.182 90.968 58 65 65 58 65 87 1 1 1 1 1 1 12002 7851 1844 7784 12322 15996 15996 1 GVTQFGNK Unmodified 849.43447 0.43446642 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 7 0 1 41.218 41.218 2 0.0043095 10057 TMT1-6 76.827 36.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7852 204 7785 12323 15997 15997 1 GVTQIDNDLK Unmodified 1101.5666 0.5666028 829 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 0 0 0 0 4 0 1 48.564 48.564 2 9.3853E-05 13709 TMT1-3 140.07 70.25 84.944 85.534 78.133 64.357 107.98 89.661 80 87 80 65 109 87 1 1 1 1 1 1 11328 7853 829 7786 12324 15998 15998 1 GVTSFGLENK Unmodified 1050.5346 0.53457439 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 7 0 1 52.465 52.465 2 6.7271E-05 14464 TMT1-6 143.39 93.976 107.79 240.47 74.15 112.53 116.43 205.61 102 234 87 109 123 196 1 1 1 1 1 1 20284 7854 671 7787 12325 15999 15999 1 GVTVGEGVR Unmodified 872.47158 0.4715802 2420 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 0 4 0 1 34.958 34.958 2 0.016338 8232 TMT1-3 80.219 66.062 84.991 85.665 70.12 74.036 83.693 113.81 80 87 73 73 87 109 1 1 1 1 1 1 12520 7855 2420 7788 12326 16000 16000 1 GVVDSDDLPLNVSR Unmodified 1484.7471 0.74708636 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 3.33 1.11 2 1 2 1 57.445 57.445 2;3 1.4795E-79 18189 TMT1-2 250.7 213.35 650.39 678.17 662.3 613.49 732.02 738.1 613 689 678 610 751 712 7 7 7 7 7 7 261710 7856 708 7789 12327;12328;12329;12330;12331;12332 16001;16002;16003;16004;16005;16006;16007 16003 7 GVVDSEDLPLNISR Unmodified 1512.7784 0.77838649 545;561 P08238;P07900;P07900-2 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 0 0 0 0 0 3.43 1.18 1 2 3 1 60.834 60.834 2;3 2.4983E-215 18542 TMT1-3 308.55 0 154.09 298.37 178.88 180.14 199.55 253.34 146 293 190 178 207 243 4 4 4 4 4 4 77309 7857 561;545 7790 12333;12334;12335;12336;12337;12338;12339 16008;16009;16010;16011;16012;16013;16014 16012 7 GVVEVTHDLQK Unmodified 1223.651 0.65100113 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 5 0 1 44.835 44.835 3 4.7886E-07 11955 TMT1-4 131.43 86.272 176.39 222.78 282.54 187.05 201.06 200 167 225 282 190 207 193 1 1 1 1 1 1 21226 7858 1223 7791 12340 16015 16015 1 GVVFDVTSGK Unmodified 1007.5288 0.52876073 2920 Q9UMX5 NENF Neudesin yes yes 0 0 0 0 0 7 0 1 56.338 56.338 2 0.0022821 15999 TMT1-6 99.855 58.826 199.21 269.55 193.26 206.75 191.86 319.66 188 269 203 203 203 305 2 2 2 2 2 2 16265 7859 2920 7792 12341 16016;16017 16016 2 GVVFSVTTVDLK Unmodified 1263.7075 0.70745338 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 0 8 0 1 67.948 67.948 3 2.6288E-09 20661 TMT1-7 145.91 99.756 107.94 199.86 84.176 112.16 104.46 128.14 102 196 94 109 109 123 1 1 1 1 1 1 20504 7860 3048 7793 12342 16018 16018 1 GVVHVYTR Unmodified 929.5083 0.50830006 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 6 0 1 30.331 30.331 3 0.012487 6431 TMT1-5 70.525 40.34 61.529 72.572 56.905 26.646 88.254 44.386 58 73 58 29 87 44 1 1 1 1 1 1 11359 7861 1552 7794 12343 16019 16019 1 GVVPLAGTDGETTTQGLDGLSER Unmodified 2272.1183 0.11828382 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 0 3.57 0.495 3 4 63.214 63.214 3;4 1.2174E-56 20659 TMT1-2 190.31 175.38 678.72 865.44 611.33 627.72 718.22 816.32 640 866 642 620 741 785 13 13 13 13 13 13 718040 7862 609 7795 12344;12345;12346;12347;12348;12349;12350 16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032 16022 13 GVVPLAGTNGETTTQGLDGLSER Unmodified 2271.1343 0.13426824 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 4 0 1 60.199 60.199 3 2.0391E-72 18283 TMT1-3 207.76 184.43 99.48 130.64 121.64 94.073 75.442 114.04 94 131 124 94 80 109 2 2 2 2 2 2 53779 7863 459 7796 12351 16033;16034 16033 2 GVVQELQQAISK Unmodified 1298.7194 0.71941505 941 P29692;P29692-2;P29692-3 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 7 0 2 66.689 66.689 2;3 5.8689E-19 20083 TMT1-6 190.36 135.75 368.8 468.93 375.78 339.43 404.68 554.5 348 470 389 338 420 531 2 2 2 2 2 2 100460 7864 941 7797 12352;12353 16035;16036 16035 2 GVVTIEQIVDTLPDR Unmodified 1653.8938 0.8937506 607 P09917-3;P09917 ALOX5 Arachidonate 5-lipoxygenase yes no 0 0 0 0 0 5 0 2 78.617 78.617 2;3 3.0361E-06 25199 TMT1-4 101.36 68.153 15.906 45.178 33.819 76.866 48.252 45.527 15 44 37 73 51 44 1 2 2 2 2 2 10340 7865 607 7798 12354;12355 16037;16038 16037 2 GVVVVIK Unmodified 712.48471 0.48471107 1134 P46779-4;P46779-5;P46779;P46779-2;P46779-3 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 0 8.5 0.5 1 1 52.246 52.246 2 0.00292 14482 TMT1-7 140.79 71.351 499.83 541.45 473.96 524.76 584.01 628.27 471 548 492 516 602 605 2 2 2 2 2 2 50854 7866 1134 7799 12356;12357 16039;16040 16039 2 GVWSELSK Unmodified 904.46543 0.46543219 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 55.744 55.744 2 0.00712 15761 TMT1-6 103.56 59.794 99.275 176.48 117.16 108.48 195.43 134.07 94 174 123 109 196 131 1 1 1 1 1 1 15789 7867 1763 7800 12358 16041 16041 1 GVYIIGSSGFDSIPADLGVIYTR Unmodified 2399.2373 0.23727674 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 7.5 0.5 1 1 85.869 85.869 3;4 5.741E-07 27592 TMT1-7 77.287 66.912 46.572 58.67 57.772 27.584 35.603 53.35 44 59 58 29 37 51 2 2 2 2 2 2 8728.7 7868 2206 7801 12359;12360 16042;16043 16043 2 GVYSEETLR Unmodified 1052.5138 0.51383895 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 2.5 0.5 1 1 39.438 39.438 2 7.2927E-06 11010 TMT1-2 160.63 102.03 154.41 218.33 192.11 136.47 155.13 173.6 146 218 196 138 160 167 2 2 2 2 2 2 29117 7869 1913 7802 12361;12362 16044;16045 16045 2 GVYVLMSGLDLER Unmodified 1450.749 0.74900062 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 75.327 75.327 2 5.3741E-16 23537 TMT1-6 172.1 157.13 38.129 58.568 34.295 21.336 35.393 37.366 36 58 36 22 36 36 1 1 1 1 1 1 6765.8 7870 898 7803 12363 16046 16046 1 GWAPTFLGYSMQGLCK Unmodified 1814.8484 0.84839709 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 9 0 1 77.662 77.662 3 8.2614E-20 22668 TMT1-8 137.46 107.32 69.167 56.22 49.51 43.786 72.038 67.234 65 58 51 44 73 65 1 1 1 1 1 1 12076 7871 1537 7804 12364 16047 16047 1 GWDENVYYTVPLVR Unmodified 1709.8413 0.8413211 2504 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 0 0 0 6 0 1 69.262 69.262 2 7.9256E-10 21725 TMT1-5 124.12 102.49 15.779 29.32 28.219 29.638 20.059 46.332 15 29 29 29 22 44 1 1 1 1 1 1 7837.7 7872 2504 7805 12365 16048 16048 1 GWDLVDAVTPGPQPTLEQLEEGGPRPLER Unmodified 3155.5887 0.58874181 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 1 5 0 1 75.52 75.52 4 7.6418E-18 23990 TMT1-4 95.366 87.701 30.648 51.61 35.14 36.887 19.47 53.81 29 51 37 36 22 51 1 1 1 1 1 1 20215 7873 1916 7806 12366 16049 16049 1 GWEEGVAQMSVGQR Unmodified 1532.7042 0.70417569 1462 P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 0 0 0 0 0 5 0 1 54.297 54.297 2 3.3076E-16 15685 TMT1-4 144.47 128.22 92.093 122.87 107.32 62.36 121.67 120.18 87 123 109 65 123 116 1 1 1 1 1 1 28292 7874 1462 7807 12367 16050 16050 1 GWFDAEGQALDGVSISDLK Unmodified 2006.9585 0.9585357 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 0 6 0 1 79.392 79.392 3 2.2826E-13 25721 TMT1-5 110.77 100.57 46.443 88.529 54.249 66.482 70.701 75.801 44 87 58 65 73 73 1 1 1 1 1 1 12083 7875 913 7808 12368 16051 16051 1 GWGVSVVVGVAASGEEIATRPFQLVTGR Unmodified 2841.5137 0.51372638 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 1 9 0 2 86.954 86.954 3 9.6351E-08 26226 TMT1-8 64.152 48.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7876 660 7809 12369;12370 16052;16053 16052 2 GWHTILIVEK Unmodified 1194.6761 0.67609367 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 8.5 0.5 1 1 56.863 56.863 3 0.00085224 16321 TMT1-7 93.096 55.984 309.02 322.6 268.91 197.82 427.16 393.96 291 327 276 203 430 381 2 2 2 2 2 2 22146 7877 2251 7810 12371;12372 16054;16055 16054 2 GWILVTK Unmodified 815.49052 0.49052473 1817 Q15036-2;Q15036 SNX17 Sorting nexin-17 yes no 0 0 0 0 0 9 0 1 62.243 62.243 2 0.010551 16602 TMT1-8 119.89 56.408 84.218 153.67 142.44 107.85 148.88 150.32 80 152 145 109 152 145 1 1 1 1 1 1 7625.6 7878 1817 7811 12373 16056 16056 1 GWLRDPSASPGDAGEQAIR Unmodified 1981.9606 0.96060139 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 4 2.16 1 1 1 48.079 48.079 3 1.417E-44 13188 TMT1-4 183.21 159.16 589.9 699.34 531.17 450.71 445.9 667.38 556 703 551 449 468 638 4 4 4 4 4 4 180940 7879 776 7812 12374;12375;12376 16057;16058;16059;16060 16058 4 GWLVDLLNK Unmodified 1056.5968 0.59678072 2338 Q93008-1;Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 0 9 0 1 80.127 80.127 2 0.016863 23628 TMT1-8 71.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7880 2338 7813 12377 16061 16061 1 GWNYILEK Unmodified 1021.5233 0.52328142 1117 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 0 8 0 1 63.774 63.774 2 0.00712 19041 TMT1-7 103.56 78.64 130.31 153.62 150.53 91.078 143.12 127.03 123 155 152 94 145 123 1 1 1 1 1 1 10973 7881 1117 7814 12378 16062 16062 1 GWPLELLCEK Unmodified 1243.6271 0.62709457 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 7 0 2 76.297 76.297 2;3 0.00070448 23926 TMT1-6 109.29 0 84.906 94.063 77.253 72.62 136.35 135.76 80 95 80 73 138 131 2 2 2 2 2 2 17383 7882 1655 7815 12379;12380 16063;16064 16064 2 GWPLYLSTK Unmodified 1063.5702 0.57023162 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 9 0 1 65.688 65.688 2 0.00013023 17941 TMT1-8 149.65 100.9 302.22 311.23 339.58 157.64 247.15 267.98 285 317 339 167 252 258 1 1 1 1 1 1 43460 7883 307 7816 12381 16065 16065 1 GWPWLLPDGSPVDIFAK Unmodified 1896.9774 0.97742065 2024 Q6P1J9 CDC73 Parafibromin yes yes 0 0 0 0 0 9 0 1 93.544 93.544 3 0.00015684 28740 TMT1-8 61.641 41.26 23.321 21.338 29.736 5.4854 20.913 53.769 22 22 29 7 22 51 1 1 1 1 1 1 2166.5 7884 2024 7817 12382 16066 16066 1 GWTGQESLSDSDPEMWELLQR Unmodified 2463.1013 0.10125355 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 5 0 1 77.072 77.072 3 1.7022E-05 24594 TMT1-4 67.56 64.732 23.361 13.892 29.451 21.892 21.222 22.846 22 15 29 22 22 22 1 1 1 1 1 1 5980.3 7885 1006 7818 12383 16067 16067 1 GWTQWYDLTEDGTRPQAMT Unmodified 2254.9953 0.99533191 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 1 6 0 1 72.001 72.001 3 0.012674 22864 TMT1-5 46.877 27.554 23.26 36.277 27.427 37.205 27.041 46.132 22 36 29 36 29 44 1 1 1 1 1 1 5333 7886 3 7819 12384 16068 16068 1 GYADIVQLLLAK Unmodified 1302.7547 0.75473792 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 9 0 1 89.173 89.173 3 9.8262E-08 27133 TMT1-8 121.08 78.333 190.13 455.65 299.96 282.3 369.7 461.69 181 445 315 281 381 443 2 2 2 2 2 2 49684 7887 2324 7820 12385 16069;16070 16070 2 GYADSPSK Unmodified 823.3712 0.37119746 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 4.5 0.5 1 1 33.014 33.014 2 0.0038186 7597 TMT1-3 129.47 50.35 1257.3 1736 1638.1 1164.2 1715.3 1614 1189 1737 1664 1184 1744 1560 3 3 3 3 3 3 359800 7888 1555;1556 7821 12386;12387 16071;16072;16073 16072 3 GYAFIEFASFEDAK Unmodified 1593.7351 0.73512469 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 6.25 0.433 3 1 77.288 77.288 2;3 8.0487E-07 24871 TMT1-5 110.08 79.009 345.53 567.72 415.79 428.3 608.51 500.71 327 562 435 425 617 486 4 4 4 4 4 4 138790 7889 786 7822 12388;12389;12390;12391 16074;16075;16076;16077 16075 4 GYAFITFCGK Unmodified 1162.5481 0.54811597 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 9 0 2 64.652 64.652 2;3 9.7574E-06 17528 TMT1-8 141.48 112.01 115.2 222.41 106.38 116.98 184.56 226.06 109 218 116 116 189 217 2 2 2 2 2 2 36937 7890 170 7823 12392;12393 16078;16079 16078 2 GYAFNHSADFETVR Unmodified 1612.727 0.72701962 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 45.203 45.203 3 5.0639E-15 12112 TMT1-4 138.35 115.54 503.41 699.07 641.24 686.13 829.89 775.82 476 699 662 677 849 750 4 4 4 4 4 4 171200 7891 1380 7824 12394;12395 16080;16081;16082;16083 16082 4 GYAFVQYSNER Unmodified 1332.6099 0.6098646 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 5 0 1 48.169 48.169 3 0.0016809 13274 TMT1-4 79.659 64.969 92.457 85.028 78.111 64.685 90.646 137.06 87 87 80 65 94 131 1 1 1 1 1 1 9796.2 7892 2896 7825 12396 16084 16084 1 GYAFVTFCTK Unmodified 1192.5587 0.55868065 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 9 0 2 62.082 62.082 2;3 2.0227E-08 16540 TMT1-8 164.68 100.26 177.48 202.09 115.59 124.78 147.27 204.73 167 203 124 123 153 196 2 2 2 2 2 2 32352 7893 226;227 7826 12397;12398 16085;16086 16085 2 GYDAPLCNLLLFK Unmodified 1522.7854 0.78538612 222 O60488-2;O60488 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 0 0 0 0 0 8 0 1 81.517 81.517 3 0.001068 25904 TMT1-7 75.479 53.423 23.36 45.19 3.0425 38.215 50.578 29.471 22 44 7 36 51 29 1 1 1 1 1 1 6391.4 7894 222 7827 12399 16087 16087 1 GYDDRDYYSR Unmodified 1308.5371 0.53709359 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 1 3 0 1 32.856 32.856 3 0.0031028 8437 TMT1-2 85.821 79.58 99.336 152.91 126.83 117.58 87.7 152.07 94 152 131 116 94 145 1 1 1 1 1 1 21943 7895 1465 7828 12400 16088 16088 1 GYDFAAVLEWFAER Unmodified 1672.7886 0.78855725 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 8 0 1 96.902 96.902 3 2.5522E-10 31642 TMT1-7 120.53 105 14.535 34.315 52.688 32.408 27.664 34.389 14 34 52 33 29 33 2 2 2 2 2 2 10695 7896 2654;2802 7829 12401 16089;16090 16090 2 GYDFESETDTETIAK Unmodified 1704.7366 0.73664084 1602 Q06210-2;Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 0 3 0 1 56.286 56.286 3 0.00072444 17743 TMT1-2 71.692 60.747 69.207 56.333 42.616 28.355 42.64 60.611 65 58 44 29 44 58 1 1 1 1 1 1 6226 7897 1602 7830 12402 16091 16091 1 GYDQSAYDGKDYIALNEDLR Unmodified 2305.0499 0.049869904 629 P10321 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes yes 0 0 0 0 1 4 0 1 58.813 58.813 3 4.3316E-10 17739 TMT1-3 101.17 79.799 77.209 132.91 75.61 58.053 44.353 184.22 73 131 80 58 51 174 1 1 1 1 1 1 21490 7898 629 7831 12403 16092 16092 1 GYDVIAQAQSGTGK Unmodified 1393.6838 0.68375782 1358;1765 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 5.5 0.5 1 1 50.127 50.127 2;3 7.3718E-34 14159 TMT1-5 196.7 141.71 175.86 354.07 259.96 201.28 271.49 201.19 167 348 269 203 275 196 2 2 2 2 2 2 36570 7899 1358;1765 7832 12404;12405 16093;16094 16094 2 GYEEWLLNEIR Unmodified 1420.6987 0.69867961 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 5 0.816 1 1 1 73.461 73.461 2;3 8.8649E-24 23236 TMT1-4 202.44 118.44 1868 2332.5 2000.7 1552.6 2114.9 2435.2 1763 2342 2051 1566 2170 2341 6 6 6 6 6 6 826800 7900 672;195;1022 7833 12406;12407;12408 16095;16096;16097;16098;16099;16100 16099 6 GYEEWLLNEIRR Unmodified 1576.7998 0.79979063 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 1 6 0 1 65.461 65.461 3 0.0005176 20250 TMT1-5 89.013 60.207 138.86 181.01 132.23 124.08 131.86 197.71 131 181 138 123 138 189 1 1 1 1 1 1 27722 7901 672;195;1022 7834 12409 16101 16101 1 GYEIDEDIVSR Unmodified 1294.6041 0.60411052 100 O14656 TOR1A Torsin-1A yes yes 0 0 0 0 0 2 0 2 52.74 52.74 2;3 0.00028352 16030 TMT1-1 81.335 55.776 30.851 28.431 20.609 29.948 27.667 37.586 29 29 22 29 29 36 1 1 1 1 1 1 2670.1 7902 100 7835 12410;12411 16102;16103 16103 2 GYEVIYLTEPVDEYCIQALPEFDGK Unmodified 2947.3837 0.38374256 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 5 0 2 85.593 85.593 3;4 1.0079E-10 27929 TMT1-4 84.327 73.928 53.926 80.154 79.544 97.343 93.123 51.709 51 80 80 95 95 51 1 2 1 2 2 2 21636 7903 708 7836 12412;12413 16104;16105 16104 2 GYEVIYLTEPVDEYCIQALPEFDGKR Unmodified 3103.4849 0.48485359 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 5.5 0.5 1 1 77.872 77.872 4 2.2898E-17 24933 TMT1-4 103.92 92.394 77.365 109.6 69.06 66.447 83.748 122.33 73 109 73 66 87 117 2 2 2 2 2 2 37724 7904 708 7837 12414;12415 16106;16107 16106 2 GYFAVTEK Unmodified 913.45453 0.45453316 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6.5 0.5 1 1 50.401 50.401 2 0.0031078 13834 TMT1-6 79.713 44.094 177.1 217.21 167.58 151.91 225.53 204.63 167 218 174 152 229 198 1 1 1 1 1 1 20058 7905 1666 7838 12416;12417 16108;16109 16109 2 GYFEHREDR Unmodified 1207.537 0.53703401 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 1 3 0 1 25.679 25.679 4 0.030133 5695 TMT1-2 53.493 50.627 23.291 28.808 28.555 21.945 21.219 22.846 22 29 29 22 22 22 1 1 1 1 1 1 2103.1 7906 2540 7839 12418 16110 16110 1 GYFEYIEENK Unmodified 1290.5768 0.57683314 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 4.33 0.471 2 1 62.382 62.382 2;3 5.9904E-05 18778 TMT1-4 123.86 100.49 330.33 638.38 387.09 468.94 514.35 599.34 313 627 414 459 532 576 3 3 3 3 3 3 101450 7907 1545 7840 12419;12420;12421 16111;16112;16113;16114 16113 4 GYFSEEMNR Unmodified 1131.4655 0.46550855 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 44.69 44.69 2 0.010939 12167 TMT1-3 87.639 81.336 122.98 151.41 121.32 46.21 122.41 120.16 116 152 123 51 123 116 1 1 1 1 1 1 8658 7908 1833 7841 12422 16115 16115 1 GYFVQNTYFDFFNYAGLQR Unmodified 2349.0855 0.085467549 559 P08236;P08236-2 GUSB Beta-glucuronidase yes no 0 0 0 0 0 9 0 1 86.349 86.349 3 2.7499E-16 26017 TMT1-8 120.63 100.58 0 30.372 28.926 14.127 28.908 22.627 0 29 29 15 29 22 0 1 1 1 1 1 10435 7909 559 7842 12423 16116 16116 1 GYGFGLIK Unmodified 853.46979 0.46978929 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 9 0 1 60.875 60.875 2 0.0018019 16116 TMT1-8 137.44 77.289 707.39 1149.2 961.45 665.35 862.26 1201.3 670 1140 983 676 893 1150 2 2 2 2 2 2 133660 7910 833 7843 12424 16117;16118 16118 2 GYGFGMVK Unmodified 857.41056 0.41055985 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 8 0 1 53.773 53.773 2 0.020341 15084 TMT1-7 88.734 56.514 444.32 634.72 528.37 374.2 571.19 837.57 420 633 541 381 590 801 1 1 1 1 1 1 56324 7911 2959 7844 12425 16119 16119 1 GYGFGMVK Oxidation (M) 873.40547 0.40547447 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 1 0 0 8 0 1 46.924 46.924 2 0.0056193 12387 TMT1-7 82.263 51.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7912 2959 7844 12426 16120 16120 321 1 GYGFIEYEK Unmodified 1104.5128 0.51277632 2869 Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 0 5 0 1 56.747 56.747 2 0.00030208 16633 TMT1-4 94.85 60.772 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7913 2869 7845 12427 16121 16121 1 GYGFVHFETQEAAER Unmodified 1739.7903 0.79034816 662 P11940-2;P11940 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 0 0 4 0 1 48.759 48.759 3 2.6083E-16 13779 TMT1-3 141.82 135.78 136.95 294.22 177.96 183.88 236.15 218.19 130 288 189 182 241 211 2 2 2 2 2 2 34432 7914 662 7846 12428 16122;16123 16122 2 GYGFVSFYNK Unmodified 1180.5553 0.55530983 1547 Q01085;Q01085-2 TIAL1 Nucleolysin TIAR yes no 0 0 0 0 0 9 0 1 62.77 62.77 3 0.0012314 16809 TMT1-8 83.948 53.29 85.054 93.394 53.033 82.84 76.508 98.021 80 94 58 80 80 94 1 1 1 1 1 1 8122.1 7915 1547 7847 12429 16124 16124 1 GYGLFAGPCK Unmodified 1068.5063 0.50625115 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 1 56.061 56.061 2 7.9339E-05 16003 TMT1-7 100.39 72.648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7916 1507 7848 12430 16125 16125 1 GYGPDGHFGMFPANYVELIE Unmodified 2211.9935 0.993541 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 5 0 1 82.462 82.462 3 0.00037956 26694 TMT1-4 58.577 49.294 122.62 182.78 155.36 138.68 154 203.48 116 182 160 138 160 195 3 3 3 3 3 3 25900 7917 2887 7849 12431 16126;16127;16128 16127 3 GYGYGQGAGTLSTDK Unmodified 1473.6736 0.67358707 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 5 0 1 45.418 45.418 3 0.00012442 12195 TMT1-4 63.037 38.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7918 830 7850 12432 16129 16129 1 GYGYGQGAGTLSTDKGESLGIK Unmodified 2158.0542 0.054227 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 1 6 0 2 53.727 53.727 3;4 1.8035E-61 15615 TMT1-5 175.85 155.03 92.177 115.55 99.436 79.25 120.34 136.21 87 116 102 80 123 131 1 1 1 1 1 1 104010 7919 830 7851 12433;12434 16130;16131 16131 2 GYIDLSK Unmodified 794.41742 0.41741937 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 0 6 0 1 51.128 51.128 2 0.0089004 14640 TMT1-5 114.6 19.715 169.16 285.62 180.88 150.66 249.52 208.21 160 282 190 152 252 202 1 1 1 1 1 1 31219 7920 492 7852 12435 16132 16132 1 GYIPIYTPFFMR Unmodified 1503.7584 0.75844309 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 80.887 80.887 2 0.0023441 23957 TMT1-8 83.998 57.614 23.035 44.286 58.421 35.05 43.395 29.676 22 44 58 36 44 29 1 1 1 1 1 1 11710 7921 1186 7853 12436 16133 16133 1 GYISPYFINTSK Unmodified 1388.6976 0.69761697 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 2 2 62.746 62.746 2;3 2.5965E-18 18629 TMT1-7 183.03 141.58 377.09 548.46 358.21 358.77 419.92 572.19 356 545 378 355 436 548 4 4 4 4 4 4 149740 7922 638 7854 12437;12438;12439;12440 16134;16135;16136;16137 16135 4 GYIWNYGTLPQTWEDPHEKDK Unmodified 2576.1972 0.19720284 2633 Q9H2U2;Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 1 7 0 1 63.077 63.077 4 2.3386E-06 18702 TMT1-6 85.231 68.932 53.91 87.893 62.186 58.341 71.625 59.784 51 87 65 58 73 58 1 1 1 1 1 1 14441 7923 2633 7855 12441 16138 16138 1 GYLDDPTVPR Unmodified 1131.556 0.55603812 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 3.5 0.5 1 1 47.003 47.003 2 1.8107E-09 14125 TMT1-2 173.48 108.22 246.9 321.78 250.06 264.65 362.18 369.16 233 322 261 262 370 356 2 2 2 2 2 2 90577 7924 655 7856 12442;12443 16139;16140;16141 16140 3 GYLDKLEPSK Unmodified 1148.6077 0.60773933 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 7 0 1 51.536 51.536 3 0.0042664 14067 TMT1-6 80.979 58.1 439.62 605.64 440.75 389.12 404.16 564.11 415 604 459 387 422 540 1 1 1 1 1 1 102860 7925 888 7857 12444 16142 16142 1 GYLGPEQLPDCLK Unmodified 1488.7283 0.72826518 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 62.007 62.007 3 0.00038237 18852 TMT1-5 81.494 59.34 192.03 349.95 250.35 226.39 245.48 315.99 182 345 261 225 255 303 2 2 2 2 2 2 145410 7926 1075 7858 12445;12446 16143;16144 16144 2 GYLISGSSYAR Unmodified 1172.5826 0.58258722 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 7 0 1 46.794 46.794 2 0.0064814 12283 TMT1-6 84.054 69.537 30.566 58.938 42.661 28.214 49.976 60.402 29 58 44 29 51 58 1 1 1 1 1 1 4950.6 7927 2116 7859 12447 16145 16145 1 GYLPSHYER Unmodified 1120.5302 0.53015772 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 4 0 1 34.338 34.338 3 0.0023332 7996 TMT1-3 86.136 76.355 30.632 27.821 57.968 66.541 55.799 52.774 29 29 58 65 58 51 1 1 1 1 1 1 6470.1 7928 2028 7860 12448 16146 16146 1 GYLQALASK Unmodified 949.52328 0.52328142 3034;1986 Q9Y5S2;Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-2;Q5VT25-6 CDC42BPB;CDC42BPA Serine/threonine-protein kinase MRCK beta;Serine/threonine-protein kinase MRCK alpha no no 0 0 0 0 0 9 0 1 56.942 56.942 2 0.0012381 14509 TMT1-8 126.07 30.537 77.175 101.52 107.91 79.572 76.365 106.55 73 102 109 80 80 102 1 1 1 1 1 1 8549.6 7929 3034;1986 7861 12449 16147 16147 1 GYLVTQDELDQTLEEFK Unmodified 2026.9735 0.97351706 789 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 0 0 0 4 0 2 82.33 82.33 3;4 3.1173E-08 26937 TMT1-3 103.04 89.1 39.216 35.868 51.183 37.02 19.72 46.341 37 37 51 37 22 44 2 2 2 2 2 2 5981.8 7930 789 7862 12450;12451 16148;16149 16149 2 GYNDDYYEESYFTTR Unmodified 1921.7643 0.76425257 1218 P50402 EMD Emerin yes yes 0 0 0 0 0 3 0 1 57.244 57.244 3 2.6564E-17 18104 TMT1-2 146.48 122.29 38.039 58.319 49.508 44.511 33.521 60.871 36 58 51 44 36 58 1 1 1 1 1 1 16099 7931 1218 7863 12452 16150 16150 1 GYNPGLLVHPDLAYLQAEGGGDR Unmodified 2411.187 0.18697251 798 P19838-2;P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 5 0 1 65.114 65.114 3 3.3836E-05 19941 TMT1-4 64.488 53.444 38.082 58.437 42.305 36.016 43.094 37.146 36 58 44 36 44 36 1 1 1 1 1 1 12417 7932 798 7864 12453 16151 16151 1 GYPGDYTK Unmodified 899.4025 0.40249759 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 5 0 1 40.574 40.574 2 0.02794 10248 TMT1-4 83.265 28.856 84.779 92.632 99.752 103.86 89.394 121.11 80 94 102 102 94 116 1 1 1 1 1 1 7177.9 7933 842 7865 12454 16152 16152 1 GYPHLCSICDLPVHSNK Unmodified 1995.9295 0.92950095 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 7 0 1 48.759 48.759 4 1.9444E-07 13032 TMT1-6 93.424 89.82 316.06 366.11 310.69 244.84 351.61 307.63 298 369 319 247 357 298 2 2 2 2 2 2 9546 7934 1109 7866 12455 16153;16154 16153 2 GYPHWPAR Unmodified 982.47733 0.47733428 1257;279 P51858;Q9Y3E1;Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;O75475;O75475-3;O75475-2 HDGF;HDGFRP3;HDGFRP2;PSIP1 Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor-related protein 2;PC4 and SFRS1-interacting protein no no 0 0 0 0 0 7 0 1 37.622 37.622 3 0.0012456 8613 TMT1-6 105.39 65.039 201.06 161.53 155.85 147.4 153.82 197.08 189 167 160 146 160 189 2 2 2 2 2 2 13127 7935 1257;279 7867 12456 16155;16156 16155 2 GYPPEDIFNLVGK Unmodified 1447.7347 0.73473076 2722 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 0 7 0 1 76.089 76.089 3 0.0050831 23837 TMT1-6 62.924 40.726 46.669 50.305 48.555 75.725 62.193 67.515 44 51 51 73 65 65 1 1 1 1 1 1 9640 7936 2722 7868 12457 16157 16157 1 GYPPPVAAKPTFGR Unmodified 1456.7827 0.78268401 2852 Q9UDY2-3;Q9UDY2-6;Q9UDY2;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 1 9 0 1 47.565 47.565 3 0.0008864 10856 TMT1-8 64.224 45.552 54.204 42.301 51.459 20.461 27.554 53.58 51 44 51 22 29 51 1 1 1 1 1 1 4091 7937 2852 7869 12458 16158 16158 1 GYPTFHYYHYGK Unmodified 1531.6884 0.68844927 1780 Q14554 PDIA5 Protein disulfide-isomerase A5 yes yes 0 0 0 0 0 8 0 1 43.861 43.861 4 1.2125E-05 11232 TMT1-7 106.29 101.14 184.72 204.05 160.3 162.03 175.28 192.21 174 206 167 160 181 185 1 1 1 1 1 1 30956 7938 1780 7870 12459 16159 16159 1 GYPTLLLFR Unmodified 1078.6175 0.61751616 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 9 0 1 70.7 70.7 2 0.0035736 19951 TMT1-8 88.921 29.715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7939 2205 7871 12460 16160 16160 1 GYPTLLWFR Unmodified 1151.6128 0.61276513 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 9 0 1 73.677 73.677 2 0.0018853 21175 TMT1-8 110.12 71.566 137.8 158.46 149.12 139.62 123.83 167.03 130 160 153 138 130 160 2 2 2 2 2 2 33885 7940 2205 7872 12461 16161;16162 16162 2 GYQPCDPQVIQDR Unmodified 1574.7147 0.71474038 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 3 0 1 43.813 43.813 3 0.0015482 12819 TMT1-2 54.95 32.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7941 651 7873 12462 16163 16163 1 GYSFSLTTFSPSGK Unmodified 1477.7089 0.70890994 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 0 9 0 1 66.296 66.296 3 2.4834E-10 18185 TMT1-8 116.51 88.829 247.98 437.4 330.38 224.56 321.55 479.05 235 432 340 229 333 458 2 2 2 2 2 2 63150 7942 891 7874 12463 16164;16165 16164 2 GYSFTTTAER Unmodified 1131.5197 0.51965261 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 5.08 2.43 2 1 2 3 1 1 2 1 40.879 40.879 2 3.4944E-50 10328 TMT1-4 230.7 167.14 47935 65523 59047 43294 57351 64919 45309 65547 60211 43817 58862 62435 27 27 27 27 27 27 11855000 7943 1357;1479 7875 12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476 16166;16167;16168;16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193 16178 28 GYSFTTTAEREIVR Unmodified 1628.8158 0.81583463 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 1 4 0 1 47.917 47.917 3 0.042963 13435 TMT1-3 47.606 27.97 68.904 94.344 61.385 65.928 77.542 90.529 65 94 65 65 80 87 1 1 1 1 1 1 10737 7944 1357;1479 7876 12477 16194 16194 1 GYSLVSGGTDNHLVLVDLRPK Unmodified 2239.1961 0.19608063 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 1 8 0 1 60.151 60.151 4 0.0033644 17606 TMT1-7 48.801 32.117 146.42 141.78 157.35 146.37 145.23 204.79 138 145 160 145 152 196 1 1 1 1 1 1 15401 7945 1006 7877 12478 16195 16195 1 GYTEVLK Unmodified 808.43307 0.43306943 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 5 0 1 46.73 46.73 2 0.00042 12713 TMT1-4 117.17 54.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7946 118 7878 12479 16196 16196 1 GYTLVEYETYK Unmodified 1364.65 0.64999808 3035 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 0 0 5 0 1 58.826 58.826 2 3.2492E-07 17394 TMT1-4 151.22 123.05 100.32 161.21 135.35 85.021 106.52 104.63 95 160 138 87 109 101 2 2 2 2 2 2 12983 7947 3035 7879 12480 16197;16198 16197 2 GYTSWAIGLSVADLAESIMK Oxidation (M) 2127.0558 0.055806905 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 1 0 0 8 0 1 90.657 90.657 4 0.0028206 29314 TMT1-7 50.883 34.003 23.37 21.474 21.401 22.381 20.686 37.786 22 22 22 22 22 36 1 1 1 1 1 1 3563.7 7948 385 7880 12481 16199 16199 34 1 GYTSWAIGLSVADLAESIMK Unmodified 2111.0609 0.060892282 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 8.33 0.471 2 1 100.4 100.4 3;4 1.3673E-23 32798 TMT1-7 133.93 116.44 58.098 106.74 63.698 71.412 69.185 113.36 55 105 68 70 73 108 5 5 5 5 5 4 12919 7949 385 7880 12482;12483;12484 16200;16201;16202;16203;16204 16201 5 GYVVWQEVFDNK Unmodified 1482.7143 0.71432967 523 P06865 HEXA Beta-hexosaminidase subunit alpha yes yes 0 0 0 0 0 7 0 1 73.653 73.653 3 5.0809E-09 22849 TMT1-6 117.25 91.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7950 523 7881 12485 16205 16205 1 GYWGGPAFLR Unmodified 1122.5611 0.56106391 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 9 0 1 62.39 62.39 2 2.7741E-05 16633 TMT1-8 134.85 97.476 60.953 148.68 89.239 72.767 90.567 128.53 58 145 94 73 94 123 1 1 1 1 1 1 18747 7951 3063 7882 12486 16206 16206 1 GYYDNPK Unmodified 855.37628 0.37628284 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 5 0 1 37.056 37.056 2 0.01669 8871 TMT1-4 100.19 67.718 99.564 153.54 88.094 87.549 121.83 81.804 94 152 94 87 123 80 1 1 1 1 1 1 7241.2 7952 1759 7883 12487 16207 16207 1 GYYEVTPPTLVQTQVEGGATLFK Unmodified 2497.2741 0.27405618 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 7 0 1 76.082 76.082 4 2.0712E-06 23793 TMT1-6 70.352 55.423 61.611 56.608 56.776 51.021 71.155 83.25 58 58 58 51 73 80 1 1 1 1 1 1 8576.3 7953 203 7884 12488 16208 16208 1 GYYSLETFTYLLALK Unmodified 1780.9287 0.92873912 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 0 9 0 1 92.189 92.189 2 8.7111E-05 28202 TMT1-8 83.397 57.279 15.936 14.647 14.255 22.793 21.437 15.378 15 15 15 22 22 15 1 1 1 1 1 1 2140.4 7954 86 7885 12489 16209 16209 1 GYYSVETVTLLVALK Unmodified 1654.9182 0.91817444 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 8 0 1 85.012 85.012 3 0.0023924 27240 TMT1-7 47.201 17.513 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7955 1482 7886 12490 16210 16210 1 HAAENPGK Unmodified 822.39842 0.39841526 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 4 0 1 21.5 21.5 3 0.016974 3698 TMT1-3 65.252 55.597 42.611 26.425 29.515 25.705 50.714 42.259 40 28 30 26 51 41 2 2 2 2 2 2 2360.7 7956 1545 7887 12491 16211;16212 16212 2 HADGLCHR Unmodified 964.42973 0.42973216 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 3 0 1 17.214 17.214 3 0.0012431 3130 TMT1-2 105.57 55.528 4.2555 3.9221 2.806 4.1119 4.9361 3.0571 4 4 3 4 5 3 1 1 1 1 1 1 518.42 7957 673 7888 12492 16213 16213 1 HADIVTTTTHK Unmodified 1222.6306 0.63060004 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 8 0 1 30.163 30.163 4 0.014933 5873 TMT1-7 53.569 29.225 54.212 42.324 50.06 51.845 48.632 67.902 51 44 51 51 51 65 1 1 1 1 1 1 2703.9 7958 1006 7889 12493 16214 16214 1 HADLEIR Unmodified 852.44537 0.44536545 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 2.5 0.5 1 1 31.385 31.385 3 0.0013816 7574 TMT1-1 130 92.452 99.784 115.3 83.457 73.087 91.856 121.03 94 116 87 73 95 116 3 3 3 3 3 3 27602 7959 1796 7890 12494;12495 16215;16216;16217 16215 3 HAEATLGSGNLR Unmodified 1224.6211 0.62109799 2083 Q9H8S9;Q7L9L4;Q7L9L4-2;Q9H8S9-2 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B yes no 0 0 0 0 0 7 0 1 30.295 30.295 3 0.012518 5779 TMT1-6 56.205 28.724 46.939 12.2 35.611 53.264 18.973 46.363 44 15 36 51 22 44 1 1 1 1 1 1 3094.5 7960 2083 7891 12496 16218 16218 1 HAELCFLDVIPFWK Unmodified 1773.8912 0.89124818 2686 Q9HC16 APOBEC3G DNA dC->dU-editing enzyme APOBEC-3G yes yes 0 0 0 0 0 8 0 1 82.574 82.574 3 0.00026963 26359 TMT1-7 62.042 39.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7961 2686 7892 12497 16219 16219 1 HAEMVHTGLK Unmodified 1121.5652 0.56516301 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 4 2.16 1 1 1 31.885 31.885 4 1.329E-05 6942 TMT1-5 140.78 123.75 1097.7 1485.9 1076.7 1077.2 1146.3 1882.9 1036 1483 1127 1064 1205 1797 4 4 4 4 4 4 126960 7962 1555;1556 7893 12498;12499;12500 16220;16221;16222;16223 16223 4 HAEMVHTGLK Oxidation (M) 1137.5601 0.56007764 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 1 0 0 5.8 0.4 1 4 29.138 29.138 3;4 0.014725 6762 TMT1-5 60.518 45.852 1093.1 1329.8 1078.3 1035.5 1037.4 1484.1 1031 1336 1118 1024 1086 1420 11 11 11 11 11 11 41020 7963 1555;1556 7893 12501;12502;12503;12504;12505 16224;16225;16226;16227;16228;16229;16230;16231;16232;16233;16234 16233 249 11 HAGGVAEYR Unmodified 958.46208 0.46207815 1047 P36959 GMPR GMP reductase 1 yes yes 0 0 0 0 0 3 0 1 22.857 22.857 3 0.00033118 4480 TMT1-2 114.89 90.263 92.15 91.729 124.03 93.635 91.168 113.59 87 94 124 94 95 109 2 2 2 2 2 2 16358 7964 1047 7894 12506 16235;16236 16235 2 HAGGVTGGWDNLLAVIPGGSSTPLIPK Unmodified 2613.3915 0.39148597 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 9 0 1 77.88 77.88 4 8.6286E-06 22772 TMT1-8 56.303 39.619 46.87 34.674 28.101 21.548 43.759 37.127 44 36 29 22 44 36 1 1 1 1 1 1 5397.9 7965 1206 7895 12507 16237 16237 1 HAHGDQYK Unmodified 954.43078 0.43077802 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 4 0 2 21.832 21.832 3;4 0.0031117 3730 TMT1-3 91.853 56.753 27.554 31.671 31.038 34.733 30.808 31.101 26 32 32 34 32 30 2 2 2 2 2 2 2688.8 7966 1164 7896 12508;12509 16238;16239 16239 2 HAIPIIK Unmodified 790.50651 0.50650915 82 O00571-2;O00571;O15523-2;O15523;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 8 0 1 41.7 41.7 3 0.014314 10314 TMT1-7 74.743 41.622 339.14 438.6 336.93 332.9 468.17 481.26 320 439 351 331 478 464 1 1 1 1 1 1 23021 7967 82 7897 12510 16240 16240 1 HAIVICNR Unmodified 981.51782 0.51781889 1287 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 0 0 0 0 0 7 0 1 29.341 29.341 3 0.0075643 5436 TMT1-6 77.674 53.519 31.957 20.895 21.399 22.239 28.278 30.107 30 22 22 22 29 29 1 1 1 1 1 1 1674.7 7968 1287 7898 12511 16241 16241 1 HALCYTASCQDMSCSK Unmodified 1917.7478 0.74777312 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 6 0 1 39.342 39.342 3 3.0686E-18 9921 TMT1-5 146 136.59 38.289 35.27 27.034 45.684 42.356 45.695 36 36 29 44 44 44 1 1 1 1 1 1 6430.1 7969 733 7899 12512 16242 16242 1 HALIIYDDLSK Unmodified 1286.6871 0.68705229 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 2 54.103 54.103 3;4 3.0717E-07 15834 TMT1-5 138.25 111.28 903.08 1236.4 1001.3 870.2 1292.7 1156 853 1235 1034 873 1312 1119 3 3 3 3 3 3 184920 7970 888 7900 12513;12514 16243;16244;16245 16244 3 HALLDVTPK Unmodified 992.56548 0.56548059 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 7 0 1 44.361 44.361 3 0.0034409 11282 TMT1-6 78.934 51.192 91.748 121.91 166.07 153.62 139.18 158.06 87 123 167 152 145 152 1 1 1 1 1 1 16718 7971 2852 7901 12515 16246 16246 1 HALLEADVAAHQDR Unmodified 1544.7696 0.76955314 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 34.884 34.884 4 0.00060141 9285 TMT1-2 73.887 54.147 77.06 116.31 114.64 78.732 99.732 97.358 73 116 116 80 102 94 1 1 1 1 1 1 6491.4 7972 1737 7902 12516 16247 16247 1 HAPGLIAALAYETANFYQK Unmodified 2077.0633 0.063275544 1988 Q5VW32-2;Q5VW32 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 0 9 0 1 75.26 75.26 4 4.2125E-10 21732 TMT1-8 86.641 70.335 61.531 63.942 63.937 50.436 79.574 52.095 58 65 65 51 80 51 1 1 1 1 1 1 5696.9 7973 1988 7903 12517 16248 16248 1 HASAAGFPLSGAASWTLGR Unmodified 1855.9329 0.93293007 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 9 0 1 58.716 58.716 3 0.00047439 15239 TMT1-8 56.9 24.838 77.646 79.086 47.755 51.416 78.723 75.572 73 80 51 51 80 73 1 1 1 1 1 1 7657.7 7974 2309 7904 12518 16249 16249 1 HAVSDPSILDSLDLNEDEREVLINNINR Unmodified 3189.5902 0.59019838 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 1 4 0 1 69.418 69.418 4 2.4944E-16 21925 TMT1-3 93.093 90.599 23.183 52.252 26.822 29.282 43.403 37.137 22 51 29 29 44 36 1 1 1 1 1 1 7714.9 7975 492 7905 12519 16250 16250 1 HAVSEGTK Unmodified 827.41373 0.41373097 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880;Q96A08 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 0 5.2 2.18 1 1 2 1 2 2 1 22.977 22.977 2;3 0.00010872 3828 TMT1-3 150.24 113.22 3095.3 1569.2 1782.2 1953.3 2889.8 1416.3 2902 1699 1829 1934 2895 1406 24 24 24 24 24 24 254970 7976 239;524;2168;2498 7906 12520;12521;12522;12523;12524;12525;12526;12527;12528;12529 16251;16252;16253;16254;16255;16256;16257;16258;16259;16260;16261;16262;16263;16264;16265;16266;16267;16268;16269;16270;16271;16272;16273;16274 16256 24 HAVTGEAVELR Unmodified 1180.62 0.62003536 2242 Q8TBF2;Q8TBF2-3;Q8TBF2-4;Q8TBF2-2;Q8TBF2-6;Q8TBF2-7 FAM213B Prostamide/prostaglandin F synthase yes no 0 0 0 0 0 3 0 1 33.24 33.24 3 4.2671E-06 8636 TMT1-2 118.77 96.427 91.72 145.57 150.82 99.946 135.64 119.79 87 145 152 102 138 116 1 1 1 1 1 1 17492 7977 2242 7907 12530 16275 16275 1 HAWCGGNFLEVTEQILAK Unmodified 2072.0149 0.014945143 1255 P51809;P51809-2 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 0 8 0 1 76.717 76.717 4 1.9275E-05 24147 TMT1-7 78.285 56.482 30.6 43.921 49.722 59.956 25.225 68.57 29 44 51 58 29 65 1 1 1 1 1 1 6304.4 7978 1255 7908 12531 16276 16276 1 HAYGDQYR Unmodified 1008.4413 0.44134271 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 3 0 1 22.859 22.859 3 0.0007377 4483 TMT1-2 129.56 107.82 54.69 110.75 91.961 87.743 99.281 98.437 52 109 95 87 102 95 3 3 3 3 3 3 15714 7979 307 7909 12532 16277;16278;16279 16277 3 HCATTISK Unmodified 916.44365 0.44365089 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 7 0 1 27.94 27.94 3 0.0069899 4914 TMT1-6 50.607 30.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7980 1314 7910 12533 16280 16280 1 HCDLQVR Unmodified 926.43923 0.43923422 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 4 0 1 25.442 25.442 3 0.03207 4586 TMT1-3 58.604 23.797 23.16 36 44.408 20.723 35.934 22.427 22 36 44 22 36 22 1 1 1 1 1 1 1448.7 7981 1754 7911 12534 16281 16281 1 HCEDGICTVTAGPK Unmodified 1543.6759 0.67591203 798 P19838-2;P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 4 0 1 37.95 37.95 3 0.021302 9547 TMT1-3 48.704 31.423 38.2 35.021 42.314 67.341 62.835 60.035 36 36 44 65 65 58 1 1 1 1 1 1 7684.6 7982 798 7912 12535 16282 16282 1 HCLVTVEK Unmodified 984.50625 0.50625115 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 6 0 1 37.364 37.364 3 0.0028788 9071 TMT1-5 93.429 46.231 169.37 248.41 177.99 265.71 243.58 288.33 160 247 190 257 254 277 1 1 1 1 1 1 176130 7983 529 7913 12536 16283 16283 1 HCNMVLENVK Unmodified 1242.5849 0.58491218 1433 P62316-2;P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 0 6 0 1 40.334 40.334 3 0.00053955 10327 TMT1-5 98.254 75.205 176.64 268.82 201.02 206.01 206.65 407.71 167 267 210 203 220 388 1 1 1 1 1 1 15881 7984 1433 7914 12537 16284 16284 1 HCSQVDSVR Unmodified 1086.4876 0.48764097 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 3.67 1.7 1 1 1 20.693 20.693 3 0.0019179 3663 TMT1-2 89.08 60.902 44.695 50.93 19.142 31.001 34.435 52.317 42 51 22 30 36 50 3 3 3 3 3 3 5351 7985 1766 7915 12538;12539;12540 16285;16286;16287 16286 3 HCTASTLPK Unmodified 1013.4964 0.49641475 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 9 0 1 29.824 29.824 3 0.0049266 4865 TMT1-8 68.224 39.075 11.64 14.928 14.794 10.809 17.69 18.683 11 15 15 11 18 18 1 1 1 1 1 1 688.95 7986 1744 7916 12541 16288 16288 1 HDAATCFVDAGNAFK Unmodified 1622.7147 0.71474038 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 6 0 1 52.07 52.07 3 1.6357E-15 14957 TMT1-5 139.77 111.47 138.54 242.7 134.72 155.06 161.86 165.94 131 239 145 152 167 160 1 1 1 1 1 1 29426 7987 1304 7917 12542 16289 16289 1 HDADGQATLLNLLLR Unmodified 1648.8897 0.88966827 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 7 0 1 71.344 71.344 3 0.008039 21991 TMT1-6 53.169 48.989 54.217 49.893 42.755 35.595 64.038 67.463 51 51 44 36 65 65 1 1 1 1 1 1 15137 7988 162 7918 12543 16290 16290 1 HDGITVAVHK Unmodified 1075.5774 0.57744226 177 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 0 6 0 1 34.237 34.237 4 0.0048018 7896 TMT1-5 69.979 55.103 129.59 270.34 172.19 152.26 192.32 226.9 123 265 181 152 198 218 1 1 1 1 1 1 17047 7989 177 7919 12544 16291 16291 1 HDGTPVPAR Unmodified 948.47773 0.47772821 1633 Q0VD83;Q0VD83-2 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 3 0 1 22.031 22.031 3 0.0051581 4195 TMT1-2 75.378 68.719 30.808 28.313 27.881 36.876 43.054 37.147 29 29 29 36 44 36 1 1 1 1 1 1 2347 7990 1633 7920 12545 16292 16292 1 HDIAFVEFDNEVQAGAAR Unmodified 1987.9388 0.93880331 580 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 0 0 0 4 0 1 57.109 57.109 3 0.001495 17135 TMT1-3 55.189 43.024 38.285 35.258 27.767 29.236 42.856 53.143 36 36 29 29 44 51 1 1 1 1 1 1 9633.4 7991 580 7921 12546 16293 16293 1 HDIAFVEFENDGQAGAAR Unmodified 1945.8919 0.89185312 571 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' yes yes 0 0 0 0 0 3 0 1 52.478 52.478 3 6.1927E-25 16238 TMT1-2 124.46 114.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7992 571 7922 12547 16294 16294 1 HDIIAWVNDIVSLNYTK Unmodified 2000.0367 0.036726442 1862 Q15555-5;Q15555-3;Q15555;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 9 0 2 86.41 86.41 3;4 3.0583E-14 26016 TMT1-8 115.98 94.175 176.53 223.17 258.75 210.41 254.55 256.04 167 225 261 211 261 247 3 3 3 3 3 3 40587 7993 1862 7923 12548;12549 16295;16296;16297 16295 3 HDLDLICR Unmodified 1040.5073 0.50731378 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 4 0 1 41.994 41.994 2 0.017104 11099 TMT1-3 91.064 68.283 99.446 138.11 120.87 76.966 173.84 134.69 94 138 123 80 174 131 1 1 1 1 1 1 19579 7994 1044;1413;1414 7924 12550 16298 16298 1 HDLLVGAPLYMESR Oxidation (M) 1615.8028 0.8028271 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 1 0 0 5.5 0.5 1 1 52.223 52.223 3 0.016603 14952 TMT1-5 58.079 43.517 316.55 376.12 219.18 172.34 254.17 317.88 298 377 232 174 261 305 2 2 2 2 2 2 38193 7995 565 7925 12551;12552 16299;16300 16300 103 2 HDLLVGAPLYMESR Unmodified 1599.8079 0.80791248 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6 0 2 57.472 57.472 2;3 1.8257E-10 17027 TMT1-5 123.1 101.18 307.29 367.26 340.66 275.98 286.07 346.81 290 370 348 276 297 333 3 3 3 3 3 3 141580 7996 565 7925 12553;12554 16301;16302;16303 16301 3 HDQDRDGALSPVELQSLFSVFPAAPWGPELPR Unmodified 3530.7583 0.75826676 2145 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 0 1 7 0 1 87.09 87.09 4 0.039026 28007 TMT1-6 26.686 16.264 7.3983 15.362 5.9186 15.633 21.766 15.369 7 15 7 15 22 15 1 1 1 1 1 1 3289.5 7997 2145 7926 12555 16304 16304 1 HDSPEDVK Unmodified 925.41412 0.4141249 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 3 1 1 1 28.28 28.28 3 0.0013806 6406 TMT1-1 103.56 70.723 100.28 129.81 167.96 75.32 112.13 167.36 95 131 166 80 116 160 2 2 2 2 2 2 14781 7998 986 7927 12556;12557 16305;16306 16305 2 HDVVFLITK Unmodified 1070.6124 0.61243078 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7.5 0.5 1 1 56.266 56.266 3 0.00028943 15952 TMT1-6 81.338 28.011 501.45 680.32 625.07 540.1 567.82 683.09 474 681 640 538 589 656 2 2 2 2 2 2 116390 7999 1540 7928 12558;12559 16307;16308;16309 16307 3 HEAFESDLAAHQDR Unmodified 1624.723 0.72299688 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 2.5 0.5 1 1 32.901 32.901 4 2.3079E-10 8174 TMT1-1 119.17 114.95 176.79 223.92 213.07 190.34 188.18 235.55 167 225 218 189 196 226 3 3 3 3 3 3 33021 8000 672;195;1022 7929 12560;12561 16310;16311;16312 16310 3 HEAMITDLEER Oxidation (M) 1358.6136 0.61362935 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 0 2 0 2 38.073 38.073 3 0.001903 9451 TMT1-1 89.805 69.071 54.157 42.171 59.427 36.081 43.492 84.039 51 44 59 37 44 80 2 2 2 2 1 2 9431 8001 1019 7930 12562;12563 16313;16314 16313 180 2 HEAMITDLEER Unmodified 1342.6187 0.61871473 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.5 0.5 1 1 41.991 41.991 3 0.00037676 11962 TMT1-2 95.477 68.328 353.73 455.78 395.58 327.36 344.09 385.67 334 457 406 327 356 371 4 4 4 4 4 4 73775 8002 1019 7930 12564;12565 16315;16316;16317;16318 16317 4 HEANNPQLK Unmodified 1049.5254 0.52540669 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 27.637 27.637 3 0.0023981 5190 TMT1-4 85.676 66.098 84.592 123.41 105.19 110.44 128.89 89.064 80 123 109 109 131 87 2 2 2 2 2 2 6560 8003 986 7931 12566;12567 16319;16320 16320 2 HEASDFPCR Unmodified 1117.4611 0.46109187 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 27.805 27.805 3 0.0012246 6405 TMT1-2 95.311 77.491 86.087 93.21 59.901 98.82 76.8 68.164 81 94 65 95 80 66 2 2 2 2 2 2 6997.2 8004 771 7932 12568;12569 16321;16322 16322 2 HECQANGPEDLNR Unmodified 1538.6532 0.65320275 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 0 2.5 0.5 1 1 25.727 25.727 3 0.00037434 5360 TMT1-1 81.789 69.369 39.272 52.213 27.926 53.705 19.875 54.865 37 52 30 51 22 52 3 3 2 3 2 3 8223 8005 1364 7933 12570;12571 16323;16324;16325 16323 3 HEDDVQHFK Unmodified 1153.5152 0.51523593 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 3 0 1 31.347 31.347 4 0.00077376 7829 TMT1-2 98.033 61.448 200.34 217.81 228.63 235.22 251.72 244.39 189 221 234 232 259 236 1 1 1 1 1 1 31257 8006 300 7934 12572 16326 16326 1 HEEAPGHRPTTNPNASK Unmodified 1841.8769 0.87687176 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 1 4.5 1.12 1 1 1 1 23.341 23.341 4;5 8.0095E-05 3953 TMT1-3 77.347 54.872 268.13 332.64 278.56 239.44 275.48 277.83 253 334 287 239 283 268 8 8 8 8 8 8 22877 8007 830 7935 12573;12574;12575;12576 16327;16328;16329;16330;16331;16332;16333;16334 16329 8 HEEFEEGCK Unmodified 1163.4553 0.45533779 2688 Q9HC38-2;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 2 0 1 32.574 32.574 3 0.00083832 7997 TMT1-1 99.688 81.376 61.086 110.19 99.542 87.596 83.069 113.82 58 109 102 87 87 109 1 1 1 1 1 1 12122 8008 2688 7936 12577 16335 16335 1 HEFEELFR Unmodified 1105.5193 0.51925868 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 4.5 0.5 1 1 51.558 51.558 3 5.8812E-12 14934 TMT1-3 148.99 95.23 139.06 127.59 144.43 92.066 109.97 207.93 131 131 145 94 116 198 1 1 1 1 1 1 23026 8009 1081 7937 12578;12579 16336;16337 16336 2 HEFPELAAR Unmodified 1068.5352 0.53524309 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 4 0 1 38.846 38.846 3 0.00041049 9839 TMT1-3 105.94 68.782 238.68 267.27 234.15 259.05 245.53 240.31 225 270 243 254 254 232 2 2 2 2 2 2 56720 8010 2066 7938 12580 16338;16339 16338 2 HEFQAETK Unmodified 988.46141 0.46140945 1659 Q12931-2;Q12931 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 0 4 0 1 30.79 30.79 3 0.001184 6686 TMT1-3 109.71 68.685 61.472 87.523 53.848 75.124 77.376 83.072 58 87 58 73 80 80 1 1 1 1 1 1 6061.3 8011 1659 7939 12581 16340 16340 1 HEGLGAFYK Unmodified 1020.5029 0.50288033 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 6.5 0.5 1 1 43.903 43.903 3 0.0089592 11640 TMT1-5 67.507 28.732 221.72 461.31 215.48 321.56 351.74 353.47 210 451 239 312 362 341 2 2 2 2 2 2 25110 8012 2019 7940 12582;12583 16341;16342 16341 2 HEGVFICR Unmodified 1016.4862 0.48618441 841 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 0 5 0 1 33.656 33.656 3 0.011815 7525 TMT1-4 71.501 59.454 46.525 81.202 46.685 76.103 48.03 52.995 44 80 51 73 51 51 1 1 1 1 1 1 4782.5 8013 841 7941 12584 16343 16343 1 HEKEDGAISTIVLR Unmodified 1566.8366 0.83657007 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 1 5 0 1 43.205 43.205 3 0.027796 11340 TMT1-4 51.07 38.302 53.888 72.724 78.645 73.635 77.994 67.064 51 73 80 73 80 65 1 1 1 1 1 1 10778 8014 1232 7942 12585 16344 16344 1 HELAPALR Unmodified 905.5083 0.50830006 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 32.744 32.744 3 0.0012319 7135 TMT1-4 106.36 69.336 46.46 73.466 64.184 33.756 93.937 82.599 44 73 65 36 94 80 1 1 1 1 1 1 15313 8015 3042 7943 12586 16345 16345 1 HELENLR Unmodified 909.46683 0.46682918 2765 Q9NW15-2;Q9NW15;Q9NW15-3;Q9NW15-5 ANO10 Anoctamin-10 yes no 0 0 0 0 0 3 0 1 28.736 28.736 3 0.010871 6788 TMT1-2 79.116 0 30.709 28.036 44.849 20.697 35.935 22.427 29 29 44 22 36 22 1 1 1 1 1 1 2291.9 8016 2765 7944 12587 16346 16346 1 HELIEFR Unmodified 942.49232 0.49231565 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4.5 0.5 1 1 41.661 41.661 3 0.0014845 10956 TMT1-3 125.25 78.882 216.49 204.99 230.34 163.77 267.71 178.91 204 210 232 167 269 175 2 2 2 2 2 2 44229 8017 1540 7945 12588;12589 16347;16348 16347 2 HELLQPFNVLYEK Unmodified 1628.8562 0.85624288 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 7.5 0.5 1 1 65.121 65.121 3 1.2401E-05 19506 TMT1-6 103.83 83.63 449.24 828.65 618.75 561.05 636.16 858.1 426 817 643 558 661 822 2 2 2 2 2 2 81987 8018 2943 7946 12590;12591 16349;16350 16349 2 HELQANCYEEVK Unmodified 1518.6773 0.67729224 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 3.25 0.829 1 1 2 39.469 39.469 3;4 2.652E-09 11085 TMT1-2 145.83 107.25 745.7 883.03 880.11 780.8 909.05 841.78 704 891 898 778 931 814 5 5 5 5 5 5 170630 8019 865 7947 12592;12593;12594;12595 16351;16352;16353;16354;16355 16352 5 HELQANCYEEVKDR Unmodified 1789.8053 0.8053463 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 3 1.29 1 1 2 1 1 36.548 36.548 3;4 2.4935E-18 8452 TMT 1-phospho 154.6 124.46 6937.7 9714.2 8045.1 6768 9365.4 9570.9 6556 9696 8285 6792 9565 9229 8 8 8 8 8 8 1520300 8020 865 7948 12596;12597;12598;12599;12600;12601 16356;16357;16358;16359;16360;16361;16362;16363 16356 8 HELTEISNVDVETQSGK Unmodified 1884.9065 0.90650013 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 0 1 48.24 48.24 3 1.1439E-19 14576 TMT1-2 140.81 112.84 46.801 50.672 26.076 45.47 56.768 52.746 44 51 29 44 58 51 1 1 1 1 1 1 8760 8021 1632 7949 12602 16364 16364 1 HEMLPASLIQAQR Unmodified 1492.782 0.78203208 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 7 0 1 48.902 48.902 3 0.0012904 12998 TMT1-6 74.15 55.317 108.48 83.729 91.179 111.3 127.79 120.01 102 87 94 109 131 116 1 1 1 1 1 1 28734 8022 1260 7950 12603 16365 16365 1 HEMLPEFYK Unmodified 1192.5587 0.55868065 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 6 0 1 51.43 51.43 3 0.00023896 14713 TMT1-5 82.749 65.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8023 2116 7951 12604 16366 16366 1 HEMPPHIYAITDTAYR Oxidation (M) 1929.9043 0.90433206 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 4 0 1 41.241 41.241 4 0.012333 10883 TMT1-3 50.079 35.421 253.27 362.17 226.53 203.35 267.28 351.62 239 360 239 203 276 337 2 2 2 2 2 2 17052 8024 1019 7952 12605 16367;16368 16368 181 2 HEMPPHIYAITDTAYR Unmodified 1913.9094 0.90941744 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 5 0 2 44.41 44.41 3;4 2.3762E-12 11716 TMT1-4 127.66 100.46 887.23 1408.2 1355.8 964.44 1260.3 1486.3 841 1401 1375 978 1296 1428 7 7 7 7 7 7 63709 8025 1019 7952 12606;12607 16369;16370;16371;16372;16373;16374;16375 16370 7 HENVIGLLDVFTPAR Unmodified 1679.8995 0.89950468 1890 Q16539;Q16539-2;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 7.5 0.5 1 1 70.28 70.28 3 8.2354E-05 21526 TMT1-7 82.663 63.83 100.64 123.25 113.41 94.17 96.347 175.27 95 124 116 94 102 167 2 2 2 2 2 2 18972 8026 1890 7953 12608;12609 16376;16377 16377 2 HEPLVLFCESCDTLTCR Unmodified 2135.9438 0.94383039 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 5 0 1 58.103 58.103 3 2.809E-07 17180 TMT1-4 91.932 82.562 37.96 65.653 56.686 43.536 62.61 98.417 36 65 58 44 65 94 1 1 1 1 1 1 8505.5 8027 1688 7954 12610 16378 16378 1 HEQEYMEVR Unmodified 1219.5292 0.52917144 1842 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 yes yes 0 0 0 0 0 2 0 1 31.545 31.545 3 0.0029127 7553 TMT1-1 82.029 67.771 15.714 52.883 19.214 30.027 27.92 30.117 15 51 22 29 29 29 1 1 1 1 1 1 4124.2 8028 1842 7955 12611 16379 16379 1 HEQILVLDPPTDLK Unmodified 1616.8774 0.87737225 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 0 5 0 2 58.77 58.77 3;4 9.0717E-05 17435 TMT1-4 86.548 59.519 729.69 922.15 832.39 732.63 831.93 1019.9 689 926 854 730 861 979 5 5 5 5 5 5 78079 8029 2813 7956 12612;12613 16380;16381;16382;16383;16384 16382 5 HEQISDLER Unmodified 1125.5415 0.54145068 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 2 0 1 32.152 32.152 3 0.0253 7811 TMT1-1 53.517 29.052 30.636 44.022 43.533 28.719 20.395 37.794 29 44 44 29 22 36 1 1 1 1 1 1 9516.7 8030 934 7957 12614 16385 16385 1 HEQNIDCGGGYVK Unmodified 1475.6463 0.64632646 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 3.5 0.5 1 1 34.997 34.997 3 7.8262E-12 9383 TMT1-2 149.57 125.14 1155.7 2142.3 1232 1049.1 1454 1701.4 1094 2106 1306 1052 1492 1635 3 3 3 3 3 3 302630 8031 918 7958 12615;12616 16386;16387;16388 16386 3 HESGASIK Unmodified 827.41373 0.41373097 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 5.25 2.68 1 1 1 1 25.546 25.546 3 0.0013349 4441 TMT1-4 103.87 49.464 366.42 352.76 333.37 330.94 409.21 312.39 345 360 343 328 416 304 5 5 5 5 5 5 19452 8032 1409;1410 7959 12617;12618;12619;12620 16389;16390;16391;16392;16393 16390 5 HESGASIKIDEPLEGSEDR Unmodified 2067.9709 0.9708913 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 1 3 0 1 41.572 41.572 4 4.4775E-13 11946 TMT1-2 106.73 90.616 46.401 88.412 61.438 75.283 44.88 145.83 44 87 65 73 51 138 1 1 1 1 1 1 7242.9 8033 1409;1410 7960 12621 16394 16394 1 HEVININLK Unmodified 1078.6135 0.61349341 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 6.67 0.471 1 2 47.387 47.387 2;3 0.00024507 12988 TMT1-5 143.86 81.661 1096.5 1246 1299 1124 1443.7 1413.9 1035 1261 1321 1124 1476 1365 4 4 4 4 4 4 265960 8034 1506 7961 12622;12623;12624 16395;16396;16397;16398 16395 4 HEVTILGGLNEFVVK Unmodified 1653.909 0.90900673 1421 P62256-2;P62256 UBE2H Ubiquitin-conjugating enzyme E2 H yes no 0 0 0 0 0 7 0 1 67.279 67.279 3 5.9987E-08 20331 TMT1-6 111.83 90.878 53.882 72.706 79.701 49.954 55.242 91.166 51 73 80 51 58 87 1 1 1 1 1 1 11542 8035 1421 7962 12625 16399 16399 1 HEYGSPGILEFFHHQLK Unmodified 2038.0061 0.006095016 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 8 0 1 56.522 56.522 5 8.8578E-06 16216 TMT1-7 82.529 60.996 77.118 132.66 91.172 49.107 63.93 52.542 73 131 94 51 65 51 1 1 1 1 1 1 9402.4 8036 2079;2399 7963 12626 16400 16400 1 HFCGGALIHAR Unmodified 1237.6138 0.61384454 805 P20160 AZU1 Azurocidin yes yes 0 0 0 0 0 8 0 1 33.098 33.098 4 6.0381E-07 6964 TMT1-7 128.86 116.23 114.82 205.15 185.61 134.81 205.94 219.05 109 203 189 137 210 211 2 2 2 2 2 2 17413 8037 805 7964 12627 16401;16402 16401 2 HFCPNVPIILVGNK Unmodified 1606.8654 0.86536778 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 0 9 0 2 61.085 61.085 2;3 8.2705E-16 16151 TMT1-8 134.59 106.19 594.68 723.25 608.68 499.66 793.82 674.51 561 727 626 504 803 654 1 1 1 1 1 1 68168 8038 1393;556 7965 12628;12629 16403;16404 16404 2 HFCPNVPIILVGNKK Unmodified 1734.9603 0.9603308 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 1 9 0 1 55.762 55.762 4 0.0013828 14036 TMT1-8 57.425 45.065 630.32 974.37 718.88 574.14 726.93 877.89 596 967 745 577 749 843 1 1 1 1 1 1 79797 8039 1393;556 7966 12630 16405 16405 1 HFDETVNR Unmodified 1016.4676 0.46755746 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 28.656 28.656 3 0.00088967 6714 TMT1-2 123.98 86.475 223.3 335.28 237.97 180.53 224.22 326.19 211 333 247 182 233 312 4 4 4 4 4 4 31633 8040 478 7967 12631;12632 16406;16407;16408;16409 16408 4 HFDSQVIIYGK Unmodified 1305.6717 0.67173657 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 7 0 1 50.949 50.949 3 0.017892 13881 TMT1-6 53.967 30.731 510.78 549.05 611.66 604.07 405.35 881.74 482 558 623 593 443 838 1 1 1 1 1 1 26493 8041 2744 7968 12633 16410 16410 1 HFEALANR Unmodified 956.48281 0.48281359 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 5 0 1 33.065 33.065 3 0.00093885 7264 TMT1-4 122.18 58.611 69.151 79.919 32.182 36.502 49.338 67.882 65 80 36 36 51 65 1 1 1 1 1 1 5994.8 8042 1857 7969 12634 16411 16411 1 HFEATDILVSK Unmodified 1258.6558 0.65575216 242 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 0 6 0 1 53.672 53.672 3 5.0227E-05 15596 TMT1-5 82.171 73.442 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8043 242 7970 12635 16412 16412 1 HFEGLIAR Unmodified 941.5083 0.50830006 2755 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 yes no 0 0 0 0 0 6 0 1 40.561 40.561 3 0.0010815 10418 TMT1-5 116.9 97.245 38.023 82.017 32.24 35.912 80.498 44.607 36 80 36 36 80 44 1 1 1 1 1 1 4039.1 8044 2755 7971 12636 16413 16413 1 HFHNTLEHLR Unmodified 1302.6582 0.6581522 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 30.969 30.969 4 0.02931 5168 TMT1-8 41.54 25 30.804 28.301 28.559 21.674 35.634 29.897 29 29 29 22 36 29 1 1 1 1 1 1 586.37 8045 2444 7972 12637 16414 16414 1 HFHVEYTGYSFK Unmodified 1513.699 0.69901396 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 7 0 1 47.76 47.76 4 0.0004991 12629 TMT1-6 81.865 54.456 122.97 136.26 136.39 92.657 104 167.59 116 138 138 94 109 160 1 1 1 1 1 1 5484.7 8046 2922 7973 12638 16415 16415 1 HFHYEEHLER Unmodified 1395.632 0.63199703 2655 Q9H4X1-2;Q9H4X1 RGCC Regulator of cell cycle RGCC yes no 0 0 0 0 0 3 0 1 29.433 29.433 4 0.00022069 7049 TMT1-2 102.52 83.899 145.3 181.64 132.15 124.21 125.33 174.45 137 182 138 123 131 167 3 3 3 3 3 3 7718.5 8047 2655 7974 12639 16416;16417;16418 16416 3 HFILDECDK Unmodified 1175.5281 0.5281088 1738 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 0 5 0 1 46.411 46.411 3 0.0021679 12598 TMT1-4 87.308 60.193 253.63 327.55 196 158.14 268.82 275.89 239 327 207 160 273 266 1 1 1 1 1 1 19136 8048 1738 7975 12640 16419 16419 1 HFIMQVVCEATQCPDTR Unmodified 2090.9336 0.93360005 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 8 0 1 60.403 60.403 3 4.6595E-10 17719 TMT1-7 111.7 91.879 54.02 64.454 63.588 58.415 63.245 60.023 51 65 65 58 65 58 1 1 1 1 1 1 15661 8049 1803 7976 12641 16420 16420 1 HFLIETGPR Unmodified 1068.5716 0.5716286 2683 Q9HBL0 TNS1 Tensin-1 yes yes 0 0 0 0 0 7 0 1 41.393 41.393 3 0.00093591 10118 TMT1-6 98.582 78.027 61.279 118.28 60.325 58.338 77.635 97.989 58 116 65 58 80 94 1 1 1 1 1 1 3828.8 8050 2683 7977 12642 16421 16421 1 HFLPEMLSK Unmodified 1100.5689 0.56885141 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 8 0 1 55.105 55.105 3 0.0026046 15592 TMT1-7 84.213 53.34 84.881 109.1 68.723 73.839 98.601 136.83 80 109 73 73 102 131 1 1 1 1 1 1 11495 8051 1501 7978 12643 16422 16422 1 HFLQQATQVNAWDR Unmodified 1712.8383 0.83830141 1050 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 0 0 0 0 0 8 0 1 50.26 50.26 3 0.019785 13710 TMT1-7 49.325 34.449 92.18 115.56 98.797 93.593 173.37 126.17 87 116 102 94 174 123 1 1 1 1 1 1 8462.4 8052 1050 7979 12644 16423 16423 1 HFLVEDK Unmodified 886.45487 0.45486751 1293 P53992;P53992-2 SEC24C Protein transport protein Sec24C yes no 0 0 0 0 0 5 0 1 41.383 41.383 3 0.033947 10620 TMT1-4 57.281 28.132 68.898 94.327 62.413 42.889 78.858 83.03 65 94 65 44 80 80 1 1 1 1 1 1 5886.2 8053 1293 7980 12645 16424 16424 1 HFNALGGWGELQNSVK Unmodified 1755.8693 0.86926718 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 8 0 2 59.396 59.396 3;4 0.0011723 17313 TMT1-7 63.923 44.848 221.78 344.9 304.86 244.88 309.72 400.51 210 343 312 246 320 384 2 2 2 2 2 2 71660 8054 608 7981 12646;12647 16425;16426 16426 2 HFNAPSHIR Unmodified 1077.5468 0.54681083 1387 P61254 RPL26 60S ribosomal protein L26 yes yes 0 0 0 0 0 7 0 1 27.428 27.428 3 0.044087 4758 TMT1-6 46.462 36.005 31.888 4.5124 46.985 4.2985 29.36 22.614 30 7 44 7 29 22 1 1 1 1 1 1 1157.6 8055 1387 7982 12648 16427 16427 1 HFNLLSSK Unmodified 944.50797 0.50796571 2543 Q9BUP3;Q9BUP3-3 HTATIP2 Oxidoreductase HTATIP2 yes no 0 0 0 0 0 9 0 1 46.099 46.099 3 0.029074 10284 TMT1-8 47.198 10.177 68.397 132.87 114.03 70.992 106.35 128.08 65 131 116 73 109 123 1 1 1 1 1 1 6720.3 8056 2543 7983 12649 16428 16428 1 HFRPELEER Unmodified 1211.6047 0.60471964 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 1 4 0 1 30.542 30.542 4 0.003139 6624 TMT1-3 83.948 44.682 38.168 51.121 34.047 36.937 20.273 30.335 36 51 36 36 22 29 1 1 1 1 1 1 7634.2 8057 1206 7984 12650 16429 16429 1 HFSGLEEAVYR Unmodified 1306.6306 0.63060004 1232 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 7 0 1 45.314 45.314 3 0.00022197 11642 TMT1-6 99.752 78.975 115.42 151.79 128.91 70.538 83.34 128.74 109 152 131 73 87 123 1 1 1 1 1 1 13067 8058 1232 7985 12651 16430 16430 1 HFSVEGQLEFR Unmodified 1347.6571 0.65714914 545;561 P08238;Q58FF7;P07900;P07900-2;Q14568;Q58FG1 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4 no no 0 0 0 0 0 6.2 1.17 2 1 1 1 49.606 49.606 3 2.3025E-10 13818 TMT1-4 166.87 122.12 668.13 1058 784.98 795.04 976.52 990.16 632 1049 820 787 1001 955 7 7 7 7 7 7 114940 8059 561;545 7986 12652;12653;12654;12655;12656 16431;16432;16433;16434;16435;16436;16437 16431 7 HFSVTAEGGLSPAQVTGAR Unmodified 1883.949 0.94897407 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 9 0 1 48.101 48.101 3 4.0099E-12 11011 TMT1-8 103.71 68.08 30.579 27.674 66.977 34.544 43.162 37.144 29 29 65 36 44 36 1 1 1 1 1 1 11319 8060 2344 7987 12657 16438 16438 1 HFTILDAPGHK Unmodified 1234.6459 0.64585618 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 0 8 1 1 1 43.074 43.074 4 0.0011121 10811 TMT1-6 82.417 60.847 160.78 225.24 198.55 176.37 163.19 311.95 152 225 204 175 174 297 2 2 2 2 2 2 12445 8061 718 7988 12658;12659 16439;16440 16439 2 HFVALSTNTTK Unmodified 1217.6404 0.64043645 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 8.67 0.471 1 2 41 41 3;4 9.7217E-09 8440 TMT1-8 135.99 113.07 580.04 833.43 632.76 516.74 681.43 756.6 548 830 655 519 699 728 4 4 4 4 4 4 86518 8062 516 7989 12660;12661;12662 16441;16442;16443;16444 16442 4 HFVLDECDK Unmodified 1161.5125 0.51245874 40 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 0 4 0 1 43.912 43.912 3 0.00038072 11870 TMT1-3 79.148 54.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8063 40 7990 12663 16445 16445 1 HFYWYLTNEGIQYLR Unmodified 2001.9737 0.97373226 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 0 9 0 1 68.93 68.93 3 2.1937E-16 19292 TMT1-8 127.78 102.36 46.668 57.858 42.322 35.464 72.42 67.223 44 58 44 36 73 65 1 1 1 1 1 1 18602 8064 1137 7991 12664 16446 16446 1 HGADPVLR Unmodified 863.46135 0.46134987 1598 Q05823-2;Q05823 RNASEL 2-5A-dependent ribonuclease yes no 0 0 0 0 0 3 0 1 25.551 25.551 3 0.0064058 5617 TMT1-2 79.597 51.085 14.746 29.504 21.371 13.203 43.902 13.671 14 29 22 14 43 14 1 1 1 1 1 1 1270.5 8065 1598 7992 12665 16447 16447 1 HGAEVIDTPVFELK Unmodified 1553.809 0.80895834 664 P12081-4;P12081 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 59.435 59.435 3 1.8302E-05 17667 TMT1-4 94.551 65.224 84.58 163.31 73.429 65.245 75.705 144.95 80 160 80 65 80 138 1 1 1 1 1 1 16393 8066 664 7993 12666 16448 16448 1 HGAGAEISTVNPEQYSK Unmodified 1786.8486 0.84859132 1152;1153;1503 P78356;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 5 0 1 42.296 42.296 3 7.6319E-10 10978 TMT1-4 108.34 97.232 99.644 107.36 113.66 110.25 112.39 112.99 94 109 116 109 116 109 1 1 1 1 1 1 19583 8067 1503;1152;1153 7994 12667 16449 16449 1 HGAGVAMDGQDVQLPLLK Unmodified 1847.9564 0.95636763 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 60.166 60.166 3 7.0994E-08 18184 TMT1-5 96.489 79.411 138.65 165.3 182.05 119.8 201.17 164.82 131 167 183 123 203 160 1 1 1 1 1 1 16827 8068 471 7995 12668 16450 16450 1 HGATHVFASK Unmodified 1053.5356 0.53557744 217 O60264;P28370-2;P28370 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 0 0 0 0 0 8 0 1 28.082 28.082 4 0.038607 5096 TMT1-7 43.77 14.422 54.311 50.154 26.784 29.437 35.277 29.907 51 51 29 29 36 29 1 1 1 1 1 1 1378 8069 217 7996 12669 16451 16451 1 HGDQEICAQYWGEGK Unmodified 1776.7526 0.75258245 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 4 0 1 45.823 45.823 3 1.1229E-07 12642 TMT1-3 107.34 103.68 107.87 152.18 135.9 83.998 159.15 126.58 102 152 138 87 160 123 1 1 1 1 1 1 22655 8070 570 7997 12670 16452 16452 1 HGEAQVK Unmodified 767.3926 0.3926016 782 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 0 3.5 0.5 1 1 22.278 22.278 3 0.0051065 3784 TMT1-3 92.677 74.828 187.27 140.27 146.15 128.19 159.44 120.17 176 146 149 128 162 117 3 3 3 3 3 3 11005 8071 782 7998 12671;12672 16453;16454;16455 16454 3 HGEEGVEAEKK Unmodified 1211.5782 0.57823012 2663 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 0 1 3 0 1 28.339 28.339 4 0.0025118 6663 TMT1-2 75.416 47.554 91.977 170.04 86.779 95.699 99.465 82.442 87 167 94 94 102 80 1 1 1 1 1 1 5435.6 8072 2663 7999 12673 16456 16456 1 HGEIDYEAIVK Unmodified 1272.635 0.63501672 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 4 0 1 48.63 48.63 3 0.0010863 13696 TMT1-3 85.821 41.633 130.21 185.72 139.93 115.95 132.78 181.7 123 185 145 116 138 174 1 1 1 1 1 1 33912 8073 1437 8000 12674 16457 16457 1 HGESAWNLENR Unmodified 1311.5956 0.59561152 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 0 5 1 1 1 34.478 34.478 3 3.4351E-07 8154 TMT1-3 136.81 80.907 268.39 464.12 304.81 250.37 482.96 435 254 458 319 254 487 421 3 3 3 3 3 3 93726 8074 782 8001 12675;12676 16458;16459;16460 16459 3 HGEVHCGTNVR Unmodified 1264.5731 0.57310194 2915 Q9UM07 PADI4 Protein-arginine deiminase type-4 yes yes 0 0 0 0 0 3 0 1 17.527 17.527 4 0.016114 3149 TMT1-2 53.028 27.811 2.0905 5.0952 5.013 1.8128 3.9582 4.1511 2 5 5 2 4 4 1 1 1 1 1 1 464.59 8075 2915 8002 12677 16461 16461 1 HGFCGIPITDTGR Unmodified 1429.6772 0.67723266 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 6 0 1 44.475 44.475 3 0.0089535 11960 TMT1-5 39.267 30.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8076 667 8003 12678 16462 16462 1 HGFLEEFITPIVK Unmodified 1528.829 0.8289655 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 8 0 1 71.822 71.822 3 0.0035361 22206 TMT1-7 65.179 43.928 30.444 66.153 57.067 35.155 42.071 68.089 29 65 58 36 44 65 1 1 1 1 1 1 5798.3 8077 1574 8004 12679 16463 16463 1 HGGEDYVFSLLTGYCEPPTGVSLR Unmodified 2653.2483 0.24825214 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 75.4 75.4 3 0.0067606 23541 TMT1-6 28.174 16.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8078 569 8005 12680 16464 16464 1 HGGLSPQPSQR Unmodified 1162.5843 0.58431855 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 6.5 1.5 1 1 22.087 22.087 3 0.0001509 3575 TMT1-7 72.922 60.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8079 817 8006 12681;12682 16465;16466 16466 2 HGGPKDEER Unmodified 1023.4734 0.47337112 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 1 3 0 1 20.42 20.42 4 0.031413 3656 TMT1-2 53.089 30.184 30.649 44.058 41.383 52.643 33.66 45.944 29 44 43 51 36 44 1 1 1 1 1 1 2085.6 8080 392 8007 12683 16467 16467 1 HGGTAELK Unmodified 811.41882 0.41881635 2323 Q92854 SEMA4D Semaphorin-4D yes yes 0 0 0 0 0 5 0 1 27.025 27.025 3 0.0092593 4925 TMT1-4 75.213 51.893 54.142 57.239 49.169 51.765 55.672 76.229 51 58 51 51 58 73 1 1 1 1 1 1 1679 8081 2323 8008 12684 16468 16468 1 HGGTIPIVPTAEFQDR Unmodified 1736.8846 0.8845829 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 0 5 0 1 50.507 50.507 3 1.156E-07 14244 TMT1-4 103.66 85.061 84.792 108.86 83.92 73.079 90.809 121.06 80 109 87 73 94 116 1 1 1 1 1 1 61393 8082 387 8009 12685 16469 16469 1 HGGVAEQCK Unmodified 984.44471 0.44471353 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 4 0 1 23.259 23.259 3 0.036202 3976 TMT1-3 49.423 21.316 0 11.519 11.051 3.589 6.6145 15.801 0 11 11 4 7 15 0 1 1 1 1 1 547.86 8083 2375 8010 12686 16470 16470 1 HGGVIHIYVDK Unmodified 1236.6615 0.66150624 1779 Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 0 0 0 6 0 1 40.055 40.055 4 0.012352 10289 TMT1-5 56.094 13.01 53.634 125.98 76.187 57.107 92.863 82.63 51 123 80 58 94 80 1 1 1 1 1 1 10969 8084 1779 8011 12687 16471 16471 1 HGIEFSVISSSEV Unmodified 1389.6776 0.67760981 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 4 0 1 60.429 60.429 2 0.0035097 18384 TMT1-3 57.598 47.645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8085 2206 8012 12688 16472 16472 1 HGINCFINR Unmodified 1129.5451 0.54509627 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 8 0 1 36.784 36.784 3 9.2108E-05 8359 TMT1-7 136.75 119.37 145.57 290.5 175.13 130.1 140.66 237.97 138 285 184 131 148 227 1 1 1 1 1 1 21251 8086 1504 8013 12689 16473 16473 1 HGIPNNQK Unmodified 906.46716 0.46716353 1168 P48960-2;P48960-3;P48960;Q9UHX3-4;Q9UHX3-6;Q9UHX3-3;Q9UHX3-2;Q9UHX3 CD97;EMR2 CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta;EGF-like module-containing mucin-like hormone receptor-like 2 yes no 0 0 0 0 0 6 0 1 25.134 25.134 3 0.029292 4472 TMT1-5 55.902 45.378 23.214 44.783 27.948 14.058 35.691 38.424 22 44 29 15 36 37 1 1 1 1 1 1 1457.2 8087 1168 8014 12690 16474 16474 1 HGIPTAQWK Unmodified 1036.5454 0.54541385 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 0 8 0 1 40.93 40.93 3 0.0023234 10035 TMT1-7 86.205 46.583 129.09 258.15 266.95 154.61 231.83 200.19 123 255 268 160 235 194 1 1 1 1 1 1 17039 8088 842 8015 12691 16475 16475 1 HGIVEDWDLMER Unmodified 1498.6875 0.68746299 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 3.5 0.5 1 1 56.783 56.783 3 1.0016E-10 16814 TMT1-3 156.14 127.34 377.32 508.08 354.38 377.52 306.48 530.65 356 507 373 370 327 506 4 4 4 4 4 4 113090 8089 1379 8016 12692;12693 16476;16477;16478;16479 16478 4 HGLEVIYMIEPIDEYCVQQLK Unmodified 2576.2655 0.2654821 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 6 0 2 76.359 76.359 3;4 1.4895E-07 24507 TMT1-5 86.8 75.058 68.75 117.66 67.583 65.431 84.345 106.33 65 116 72 65 87 102 2 2 2 2 2 2 36290 8090 545 8017 12694;12695 16480;16481 16480 2 HGLYLPTR Unmodified 955.52395 0.52395013 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 7 0 1 37.343 37.343 3 0.010604 8532 TMT1-6 73.26 15.67 61.496 111.33 29.605 52.922 56.169 60.225 58 109 36 51 58 58 1 1 1 1 1 1 4810 8091 1176 8018 12696 16482 16482 1 HGMFLVR Unmodified 858.45343 0.45342772 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 9 0 1 39.53 39.53 3 0.0019248 7986 TMT1-8 111.69 78.33 38.08 58.431 42.648 28.344 43.153 45.673 36 58 44 29 44 44 1 1 1 1 1 1 6927.5 8092 1127 8019 12697 16483 16483 1 HGPLALVDK Unmodified 948.53927 0.53926584 1602 Q06210-2;Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 0 7 0 1 46.116 46.116 3 0.0093871 11975 TMT1-6 66.621 40.179 77.553 78.826 63.68 34.342 64.352 59.992 73 80 65 36 65 58 1 1 1 1 1 1 3675.8 8093 1602 8020 12698 16484 16484 1 HGSALDVLLSMGFPR Unmodified 1598.8239 0.8238969 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 9 0 1 75.988 75.988 3 1.8447E-07 21989 TMT1-8 98.943 78.628 46.706 50.407 42.354 44.775 42.141 53.163 44 51 44 44 44 51 1 1 1 1 1 1 11897 8094 2263 8021 12699 16485 16485 1 HGSLGFLPR Unmodified 982.53485 0.53484916 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 8 0 1 41.276 41.276 3 0.033405 10132 TMT1-7 50.473 27.582 210.47 362.2 206.7 289.07 305.46 434.74 199 357 224 281 319 416 1 1 1 1 1 1 15244 8095 1061 8022 12700 16486 16486 1 HGSYEDAVHSGALND Unmodified 1570.6648 0.6648133 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 2 0 1 36.058 36.058 3 0.0025482 9401 TMT1-1 46.481 33.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8096 770 8023 12701 16487 16487 1 HGTDDGVVWMNWK Unmodified 1543.6878 0.68779734 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 7 0.816 1 1 1 58.993 58.993 3 3.5963E-11 17111 TMT1-6 138.75 126.99 422.47 572.35 464.93 524.7 499.47 744.74 399 572 485 514 525 712 3 3 3 3 3 3 96328 8097 438 8024 12702;12703;12704 16488;16489;16490 16489 3 HGVGLDVPPIFR Unmodified 1305.7194 0.71935547 1628 Q08AF3;Q08AF3-2 SLFN5 Schlafen family member 5 yes no 0 0 0 0 0 7 0 1 57.793 57.793 3 0.00058138 16578 TMT1-6 83.081 39.569 37.928 74.199 54.781 74.793 92.05 82.653 36 73 58 73 94 80 1 1 1 1 1 1 12789 8098 1628 8025 12705 16491 16491 1 HGVPISVTGIAQVK Unmodified 1404.8089 0.80889876 318 O75955 FLOT1 Flotillin-1 yes yes 0 0 0 0 0 8 0 1 51.043 51.043 3 8.1446E-15 14017 TMT1-7 130.36 95.473 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8099 318 8026 12706 16492 16492 1 HGVYNPNK Unmodified 927.45626 0.45626449 1075 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 0 6 0 1 27.811 27.811 3 0.0027556 5382 TMT1-5 94.262 55.299 304.08 377.23 330.38 226.41 397.53 426.78 287 379 337 232 404 411 2 2 2 2 2 2 48939 8100 1075 8027 12707 16493;16494 16493 2 HGYIGEFEIIDDHR Unmodified 1699.7954 0.79543354 1418 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 0 3.5 0.5 1 1 49.923 49.923 4 6.2134E-06 15385 TMT1-2 100.22 76.151 277.44 271.45 209.77 188.96 271.75 240.62 261 276 218 189 276 233 4 4 4 4 4 4 98822 8101 1418 8028 12708;12709 16495;16496;16497;16498 16496 4 HGYIPGK Unmodified 770.40752 0.40752338 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 7 0 1 35.881 35.881 3 0.027488 8019 TMT1-6 61.837 27.759 251.49 256.48 255.09 190.56 275.88 362.03 237 261 259 193 284 347 1 1 1 1 1 1 67817 8102 2913 8029 12710 16499 16499 1 HHAAYVNNLNVTEEK Unmodified 1737.8434 0.84344636 465 P04179-4;P04179;P04179-2;P04179-3 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 4.17 0.687 1 3 2 36.329 36.329 3;4;5 5.3698E-08 8810 TMT1-3 111.12 85.794 761.58 1252.1 1145.2 1011.2 1069.6 1249.7 722 1243 1173 1006 1108 1201 7 7 7 7 7 7 236460 8103 465 8030 12711;12712;12713;12714;12715;12716 16500;16501;16502;16503;16504;16505;16506 16502 7 HHAISAK Unmodified 762.41367 0.41367139 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 7.33 1.25 1 1 1 22.389 22.389 3 0.0063096 3978 TMT1-8 83.614 53.429 75.273 88.314 78.158 85.432 91.561 82.667 71 89 81 84 94 80 5 5 5 5 5 5 4253.6 8104 920 8031 12717;12718;12719 16507;16508;16509;16510;16511 16511 5 HHCPNTPIILVGTK Unmodified 1585.8399 0.83988131 1466 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 0 0 0 8 0 2 40.81 40.81 3;4 4.506E-15 9910 TMT1-7 137.84 120.21 694.96 860.98 1130.9 797.63 962.84 1171.8 658 871 1129 808 994 1125 3 3 3 3 3 3 114780 8105 1466 8032 12720;12721 16512;16513;16514 16512 3 HHCPSTPIILVGTK Unmodified 1558.829 0.82898227 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 0 8 0 1 41.205 41.205 4 2.6515E-11 10089 TMT1-7 128.36 102.91 1146 1898.8 1450.4 1138.9 1740.3 1713.5 1085 1880 1498 1151 1770 1654 2 2 2 2 2 2 104800 8106 717 8033 12722 16515;16516 16515 2 HHEEEIVHHK Unmodified 1293.6214 0.62143234 2880 Q9UII2 ATPIF1 ATPase inhibitor, mitochondrial yes yes 0 0 0 0 0 3 0 1 24.243 24.243 4 0.0090288 4901 TMT1-2 62.823 48.136 23.458 29.274 0 30.872 43.843 22.201 22 29 0 29 44 22 1 1 0 1 1 1 1441.5 8107 2880 8034 12723 16517 16517 1 HHGPQTLYLPVTLSSIPVFQR Unmodified 2389.2906 0.29064972 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 65.639 65.639 4 4.0758E-09 17910 TMT1-8 76.704 57.876 177.47 147.02 163.89 159.14 259.32 185.55 167 152 167 159 261 181 2 2 2 2 2 2 20614 8108 1792 8035 12724 16518;16519 16518 2 HHITPLLSAVYEGHVSCVK Unmodified 2146.0993 0.099343474 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 0 8 0 1 48.025 48.025 5 0.00016465 12790 TMT1-7 62.94 45.862 192.75 124.03 141.2 163.31 167.75 196.69 181 131 145 160 174 189 1 1 1 1 1 1 7348.5 8109 1347 8036 12725 16520 16520 1 HHLEAVQNAK Unmodified 1145.5942 0.59415496 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 5.5 0.5 1 1 27.12 27.12 4 0.00017196 5075 TMT1-4 103.55 70.458 837.09 1280.6 1234.6 924.51 745.8 1321.9 793 1276 1254 926 797 1260 6 6 6 6 6 6 51094 8110 2849 8037 12726;12727 16521;16522;16523;16524;16525;16526 16522 6 HHLGAATPENPEIELLR Unmodified 1895.9854 0.98535957 2460 Q99417 MYCBP C-Myc-binding protein yes yes 0 0 0 0 0 4 0 1 44.753 44.753 4 1.3336E-06 12156 TMT1-3 90.853 80.625 77.058 116.31 114.98 71.054 100.08 97.348 73 116 116 73 102 94 1 1 1 1 1 1 17379 8111 2460 8038 12728 16527 16527 1 HHLQIPIHFPK Unmodified 1365.767 0.76697436 2969 Q9Y2Q3;Q9Y2Q3-3;Q9Y2Q3-2 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 9 0 2 45.213 45.213 3;4 0.0061395 9960 TMT1-8 60.064 30.977 153.73 164.45 171.87 129.3 193.67 157.57 145 167 174 131 196 153 2 2 2 2 2 2 14760 8112 2969 8039 12729;12730 16528;16529 16528 2 HHPEDVEPALRK Unmodified 1426.7317 0.73171107 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 1 4 0 1 30.14 30.14 4 0.019388 6418 TMT1-3 51.286 27.032 169.17 316.92 154 153.21 199.28 236.3 160 311 167 152 205 227 1 1 1 1 1 1 9070.8 8113 705 8040 12731 16530 16530 1 HHPQVLSMK Unmodified 1075.5597 0.5596837 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 8 0 1 31.768 31.768 3 0.0085475 6459 TMT1-7 45.368 24.591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8114 981 8041 12732 16531 16531 1 HHSLGGQYGVQGFPTIK Unmodified 1824.9271 0.92711641 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 8 0 1 46.503 46.503 4 8.2547E-14 12199 TMT1-7 118.71 86.881 176.51 201.55 279.28 215.9 188.49 375.18 167 205 279 216 202 357 1 1 1 1 1 1 26752 8115 1827 8042 12733 16532 16532 1 HHWLVDDAWFCDR Unmodified 1755.7576 0.75760824 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6 0 1 56.762 56.762 4 0.00029147 16815 TMT1-5 81.92 72.988 61.641 49.139 57.939 34.966 49.409 67.88 58 51 58 36 51 65 1 1 1 1 1 1 9561.6 8116 772 8043 12734 16533 16533 1 HHYESLQTAK Unmodified 1212.5887 0.58873523 76 O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN1 Myc box-dependent-interacting protein 1 yes no 0 0 0 0 0 5 0 1 28.394 28.394 3 0.010988 5505 TMT1-4 63.283 42.947 46.909 27.228 27.809 38.138 34.327 45.924 44 29 29 37 36 44 1 1 1 1 1 1 1214.3 8117 76 8044 12735 16534 16534 1 HIAEDADR Unmodified 925.42536 0.42535829 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 0 2 0.816 1 1 1 21.924 21.924 3 0.00028009 4045 TMT1-1 141.93 89.631 222.65 315.5 214.3 179.86 218.37 253.87 210 314 224 180 225 244 6 7 7 7 7 7 49934 8118 592;593;594;595 8045 12736;12737;12738 16535;16536;16537;16538;16539;16540;16541 16538 7 HIAEDADRK Unmodified 1053.5203 0.52032131 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 1 2.5 0.5 1 1 25.955 25.955 4 0.0095575 5595 TMT1-2 65.347 38.749 161.95 234.06 175.21 153.76 161.11 189.41 153 233 182 153 167 182 3 3 3 3 3 3 8251.3 8119 592;593;594;595 8046 12739;12740 16542;16543;16544 16543 3 HIAEDSDR Unmodified 941.42027 0.42027292 551;552 P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 0 2 0 1 20.267 20.267 3 0.021809 3505 TMT1-1 61.582 25.397 23.448 14.135 14.59 15.12 21.533 22.838 22 15 15 15 22 22 1 1 1 1 1 1 1879.7 + 8120 551;552 8047 12741 16545 16545 1 HIAEEADR Unmodified 939.44101 0.44100836 519;520;521;1486;1487;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 0 0 0 0 0 4.45 2.64 2 1 2 1 1 1 1 1 1 22.666 22.666 2;3 2.6908E-19 4262 TMT1-1 197.3 127.3 1673 2168.1 1928.5 1544.8 1897.1 2037.4 1580 2174 1974 1550 1947 1962 15 16 16 15 15 16 486300 8121 519;520;521;518;1486;1487 8048 12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752 16546;16547;16548;16549;16550;16551;16552;16553;16554;16555;16556;16557;16558;16559;16560;16561 16548 16 HIAEEADRK Unmodified 1067.536 0.53597137 519;520;521;1486;1487;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 0 0 0 0 1 2.8 1.17 1 1 1 2 26.305 26.305 3;4 0.0010221 5861 TMT1-2 96.034 56.487 2017.3 2740.4 2708.6 1951.4 2496.9 2959.4 1908 2746 2745 1976 2570 2843 9 9 9 9 9 9 154230 8122 519;520;521;518;1486;1487 8049 12753;12754;12755;12756;12757 16562;16563;16564;16565;16566;16567;16568;16569;16570 16566 9 HIALLGFEK Unmodified 1026.5862 0.58621603 17 P14598;A6NI72;P14598-2 NCF1;NCF1B Neutrophil cytosol factor 1;Putative neutrophil cytosol factor 1B yes no 0 0 0 0 0 8 0 1 56.93 56.93 3 0.0018306 16293 TMT1-7 89.698 65.495 153.15 262.12 187.41 159.02 249.16 238.07 145 259 195 160 253 230 1 1 1 1 1 1 32137 8123 17 8050 12758 16571 16571 1 HIAQLAGNSDLILPVPAFNVINGGSHAGNK Unmodified 3023.5941 0.59410196 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 8 0 1 69.853 69.853 4 7.134E-06 21437 TMT1-7 55.413 45.564 54.069 73.226 47.866 59.486 56.123 52.764 51 73 51 58 58 51 1 1 1 1 1 1 18799 8124 581 8051 12759 16572 16572 1 HIDCAHVYQNENEVGVAIQEK Unmodified 2452.1441 0.14412141 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 0 4 0 2 47.144 47.144 3;4 1.7032E-19 13133 TMT1-3 129.12 91.719 99.465 145.71 111.34 110.65 98.264 97.4 94 145 116 109 102 94 1 1 1 1 1 1 25526 8125 716 8052 12760;12761 16573;16574 16573 2 HIDLVEGDEGR Unmodified 1238.5891 0.58912916 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 2.5 0.5 1 1 39.27 39.27 3 2.8679E-09 10759 TMT1-1 161.67 126.45 183.99 253.83 240.61 211.03 279.15 239.35 174 254 246 211 284 232 3 3 3 3 3 3 105080 8126 787 8053 12762;12763 16575;16576;16577 16576 3 HIEEGLGR Unmodified 909.46683 0.46682918 338 O95140;O95140-2 MFN2 Mitofusin-2 yes no 0 0 0 0 0 3 0 1 29.775 29.775 3 0.00367 7255 TMT1-2 89.752 24.949 38.199 43.652 35.179 21.57 20.174 53.79 36 44 36 22 22 51 1 1 1 1 1 1 3696 8127 338 8054 12764 16578 16578 1 HIEIFTDLSSR Unmodified 1316.6725 0.67246486 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 6 0 1 53.202 53.202 3 2.5665E-06 15361 TMT1-5 123.67 101.34 77.313 101.9 84.377 73.027 92.131 82.651 73 102 87 73 94 80 1 1 1 1 1 1 37264 8128 676 8055 12765 16579 16579 1 HIEPELAGR Unmodified 1020.5352 0.53524309 1527 P86791;P86790 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B yes no 0 0 0 0 0 3 0 1 33.708 33.708 3 0.0027363 8815 TMT1-2 56.432 33.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8129 1527 8056 12766 16580 16580 1 HIFALFNTEQR Unmodified 1374.7044 0.70443369 1591;2942 Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4 DNM1;DNM3 Dynamin-1;Dynamin-3 no no 0 0 0 0 0 9 0 1 55.136 55.136 3 0.00011726 13767 TMT1-8 94.616 71.39 77.795 48.201 48.897 67.362 40.846 60.662 73 51 51 65 44 58 1 1 1 1 1 1 12034 8130 1591;2942 8057 12767 16581 16581 1 HIIEGLK Unmodified 808.48069 0.48068833 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5;Q14722-2;Q14722-3;Q14722 KCNAB2;KCNAB1 Voltage-gated potassium channel subunit beta-2;Voltage-gated potassium channel subunit beta-1 yes no 0 0 0 0 0 7 0 1 42.356 42.356 3 0.0051601 10505 TMT1-6 57.811 22.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8131 1691 8058 12768 16582 16582 1 HIIYVDNK Unmodified 1000.5342 0.53418046 222 O60488-2;O60488 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 0 0 0 0 0 6 0 1 39.822 39.822 3 0.0003136 10112 TMT1-5 87.616 57.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8132 222 8059 12769 16583 16583 1 HILANFK Unmodified 841.48102 0.48102268 687 P13693;P13693-2;Q56UQ5 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 0 0 0 0 0 9 0 2 44.264 44.264 2;3 0.0036198 9654 TMT1-8 92.692 30.695 177.17 193.66 175.43 177.23 190.65 181.11 167 196 181 175 196 175 2 2 2 2 2 2 130510 8133 687 8060 12770;12771 16584;16585 16585 2 HILGFDTGDAVLNEAAQILR Unmodified 2152.1277 0.12766671 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 7 0 1 81.277 81.277 4 0.004899 25788 TMT1-6 45.577 42.115 15.82 29.433 21.296 14.858 14.216 23.046 15 29 22 15 15 22 1 1 1 1 1 1 2323.4 8134 2947 8061 12772 16586 16586 1 HILILQNK Unmodified 977.6022 0.60220045 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 9 0 1 45.708 45.708 3 0.0010701 10064 TMT1-8 117.17 82.361 184.14 278 194.25 174.73 264.07 239.78 174 276 203 175 268 232 2 2 2 2 2 2 16945 8135 1077 8062 12773 16587;16588 16587 2 HILLAVANDEELNQLLK Unmodified 1932.068 0.068026571 268;2814 O75367-2;O75367-3;O75367;Q9P0M6 H2AFY;H2AFY2 Core histone macro-H2A.1;Core histone macro-H2A.2 no no 0 0 0 0 0 6.67 0.471 1 2 71.036 71.036 3;4 3.5366E-36 21772 TMT1-6 190.44 148.79 315.79 446.32 287.18 324.53 373.39 389.1 298 444 305 319 384 375 4 4 4 4 4 4 144290 8136 268;2814 8063 12774;12775;12776 16589;16590;16591;16592 16590 4 HILVSQGLIR Unmodified 1134.6873 0.68732706 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 44.555 44.555 3 0.00074483 9681 TMT1-8 81.263 34.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8137 1977 8064 12777 16593 16593 1 HILYNEQR Unmodified 1071.5461 0.54614213 1253;1093 P42229;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 5 0 1 29.875 29.875 3 0.013045 6039 TMT1-4 69.716 34.935 146.09 181.86 179.27 159.03 274.77 131.81 138 183 183 160 274 131 1 1 1 1 1 1 9564.7 8138 1093;1253 8065 12778 16594 16594 1 HINDSAPEVR Unmodified 1136.5574 0.5574351 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 2.5 0.5 1 1 29.105 29.105 3 0.0003921 6679 TMT1-1 100.69 57.884 46.445 88.537 53.815 76.21 77.876 67.068 44 87 58 74 80 65 2 2 2 2 2 2 11956 8139 1744 8066 12779;12780 16595;16596 16595 2 HIPGAAFFDIDQCSDR Unmodified 1847.8261 0.82608174 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 6 0 1 59.569 59.569 3 1.4964E-09 17920 TMT1-5 115.91 104.63 54.081 80.813 39.48 67.505 63.084 52.566 51 80 44 65 65 51 1 1 1 1 1 1 13795 8140 883 8067 12781 16597 16597 1 HISDLYEDLR Unmodified 1259.6146 0.61461563 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 51.331 51.331 3 0.0059451 14779 TMT1-3 70.412 45.536 46.483 88.643 47.318 51.881 55.41 83.699 44 87 51 51 58 80 1 1 1 1 1 1 11113 8141 1833 8068 12782 16598 16598 1 HITGSYK Unmodified 804.413 0.41300269 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 7 0 1 30.947 30.947 3 0.0018681 6052 TMT1-6 75.189 51.217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8142 1820 8069 12783 16599 16599 1 HITIFSPEGR Unmodified 1155.6037 0.60365701 1361 P60900 PSMA6 Proteasome subunit alpha type-6 yes yes 0 0 0 0 0 7 0 1 44.457 44.457 3 0.0063748 11308 TMT1-6 69.276 51.29 46.347 88.264 70.538 65.52 70.232 90.738 44 87 73 65 73 87 1 1 1 1 1 1 11373 8143 1361 8070 12784 16600 16600 1 HITSLEVIK Unmodified 1038.6073 0.6073454 449;636 P02776;P10720 PF4;PF4V1 Platelet factor 4;Platelet factor 4, short form;Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) no no 0 0 0 0 0 6.5 2.24 1 1 4 1 1 47.457 47.457 3;4 2.6253E-07 12445 TMT1-6 166.09 91.045 14417 17513 16228 14549 19003 22654 13608 17628 16635 14523 19550 21760 15 15 15 15 15 15 2855900 8144 449;636 8071 12785;12786;12787;12788;12789;12790;12791;12792 16601;16602;16603;16604;16605;16606;16607;16608;16609;16610;16611;16612;16613;16614;16615 16606 15 HIVAVLPEIDPVLFQGK Unmodified 1874.0666 0.066570008 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 8 0 1 74.176 74.176 3 1.432E-08 23093 TMT1-7 103.79 87.107 37.873 74.045 64.175 34.155 72.737 59.752 36 73 65 36 73 58 1 1 1 1 1 1 19037 8145 2884 8072 12793 16616 16616 1 HIVLSGGSTMYPGLPSR Unmodified 1770.9087 0.90868916 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 9 0 1 51.791 51.791 3 7.8845E-36 12492 TMT1-8 164.8 144.07 61.578 64.072 56.004 58.3 93.358 66.626 58 65 58 58 94 65 1 1 1 1 1 1 34548 8146 1380 8073 12794 16617 16617 1 HIVNHAVVNEDPNAR Unmodified 1683.8441 0.84411507 2716 Q9NQT8 KIF13B Kinesin-like protein KIF13B yes yes 0 0 0 0 0 4 0 1 28.86 28.86 4 0.00072063 5928 TMT1-3 69.345 57.871 38.147 74.808 17.452 37.519 41.962 68.093 36 73 22 36 44 65 1 1 1 1 1 1 4511.3 8147 2716 8074 12795 16618 16618 1 HIVTFDGQNFK Unmodified 1304.6513 0.65133548 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7 0 1 49.502 49.502 3 4.0843E-05 13312 TMT1-6 107.83 75.96 611.14 805.36 658.91 692.63 661.1 839.27 577 806 685 681 690 805 1 1 1 1 1 1 60844 8148 471 8075 12796 16619 16619 1 HIYLSTR Unmodified 888.48175 0.48175096 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 7 0 1 32.817 32.817 3 0.0057987 6720 TMT1-6 90.706 57.814 46.654 42.706 57.663 51.539 40.783 53.202 44 44 58 51 43 51 1 1 1 1 1 1 4214.3 8149 2867 8076 12797 16620 16620 1 HIYYITGETK Unmodified 1223.6186 0.61863837 545 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 0 6.5 0.5 1 1 43.368 43.368 3 0.00011203 10974 TMT1-6 113.1 79.139 1224.9 1764.2 1288.9 1147 1527.1 1635.4 1157 1756 1342 1146 1564 1575 3 3 3 3 3 3 189080 8150 545 8077 12798;12799 16621;16622;16623 16623 3 HKDFLEELEESR Unmodified 1530.7314 0.7314363 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 1 4 0 1 51.763 51.763 4 0.0014812 14938 TMT1-3 77.078 48.102 153.9 180.03 130.08 171.93 151.65 197.15 145 181 138 167 159 189 2 2 2 2 2 2 13002 8151 651 8078 12800 16624;16625 16624 2 HKLDVTSVEDYK Unmodified 1432.7198 0.71980898 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 1 6 0 1 45.499 45.499 3 0.021869 12389 TMT1-5 56.569 35.012 138.33 234.58 176.01 113.51 148.07 166.33 131 232 181 116 152 160 1 1 1 1 1 1 12299 8152 1161 8079 12801 16626 16626 1 HKQELTEK Unmodified 1011.5349 0.53490874 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 5.5 0.5 1 1 28.735 28.735 4 0.011434 5622 TMT1-4 74.684 44.7 455.38 487.96 415.68 355.76 514 517.27 429 494 428 357 524 499 3 3 3 3 3 3 17453 8153 251 8080 12802;12803 16627;16628;16629 16627 3 HKSDFGK Unmodified 817.40825 0.40825167 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 4 3 1 1 30.133 30.133 4 0.0037675 5795 TMT1-6 100.45 73.353 1053.1 1450.5 1206.9 951.97 1116.5 1546.9 995 1449 1240 956 1160 1481 4 4 4 4 4 4 27019 8154 918 8081 12804;12805 16630;16631;16632;16633 16631 4 HKSETDTSLIR Unmodified 1285.6626 0.66262845 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 1 6 1 1 1 30.309 30.309 4 0.00083394 6115 TMT1-4 89.805 66.055 277.33 274.39 225.14 228.61 207.26 298.96 261 279 234 225 218 286 2 2 2 2 2 2 17990 8155 1068 8082 12806;12807 16634;16635 16634 2 HLACLPR Unmodified 865.45924 0.45924138 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 32.622 32.622 3 0.00086234 6645 TMT1-7 84.359 49.466 61.306 71.951 94.91 48.746 71.26 83.247 58 73 94 51 73 80 1 1 1 1 1 1 9677 8156 410 8083 12808;12809 16636;16637 16637 2 HLAEEYGER Unmodified 1102.5043 0.5043369 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 2 0 1 29.873 29.873 3 0.0034386 6928 TMT1-1 78.939 14.285 139.01 158.75 126.67 108.81 147.51 188.74 131 160 131 109 152 181 1 1 1 1 1 1 12423 8157 1960 8084 12810 16638 16638 1 HLAELNHQK Unmodified 1088.5727 0.57269123 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 6 0 1 29.378 29.378 4 0.0015221 5965 TMT1-5 88.948 60.935 122.57 221.49 131.64 84.692 193.85 211.93 116 218 138 88 196 204 2 2 2 2 2 2 7058.6 8158 538 8085 12811 16639;16640 16639 2 HLAGEVAK Unmodified 823.4552 0.45520186 1683 Q13200;Q13200-3 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 5 0 1 32.025 32.025 3 0.0043627 6876 TMT1-4 87.181 47.518 168.68 322.04 231.91 243.44 326.82 330.73 160 317 243 241 334 319 1 1 1 1 1 1 21079 8159 1683 8086 12812 16641 16641 1 HLAGLAVGR Unmodified 892.52428 0.52428448 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 8 0 1 35.906 35.906 3 4.141E-05 8010 TMT1-7 145.34 45.275 123.34 89.807 113.19 141.69 127.46 89.105 116 94 116 138 131 87 1 1 1 1 1 1 33811 8160 3051 8087 12813 16642 16642 1 HLAGLGLTEAIDKNK Unmodified 1578.873 0.87295558 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 1 7 0 1 51.16 51.16 4 0.0010531 13959 TMT1-6 69.716 53.05 107.42 190.86 179.13 105.93 134.56 143.27 102 189 181 109 138 138 1 1 1 1 1 1 6902.7 8161 1223 8088 12814 16643 16643 1 HLAGVPLIGWVLR Unmodified 1429.8558 0.85578937 2228 Q8NFW8;Q8NFW8-2 CMAS N-acylneuraminate cytidylyltransferase yes no 0 0 0 0 0 9 0 1 72.359 72.359 3 0.0010699 20593 TMT1-8 67.385 37.131 23.337 28.938 20.61 30.092 20.039 46.332 22 29 22 29 22 44 1 1 1 1 1 1 4010.8 8162 2228 8089 12815 16644 16644 1 HLAPEVFR Unmodified 967.52395 0.52395013 99 O14639-4;O14639-3;O14639-5;O14639-2;O14639-6;O14639 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 0 0 6 0 1 39.473 39.473 3 0.0016986 10001 TMT1-5 101.41 73.194 45.496 81.399 39.066 52.678 39.155 99.087 43 80 43 51 43 94 1 1 1 1 1 1 10097 8163 99 8090 12816 16645 16645 1 HLAQCLQER Unmodified 1153.5662 0.56622565 2170 Q8N2G8;Q8N2G8-3 GHDC GH3 domain-containing protein yes no 0 0 0 0 0 5 0 1 31.142 31.142 3 0.00066519 6522 TMT1-4 72.325 60.634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8164 2170 8091 12817 16646 16646 1 HLAQEAK Unmodified 795.4239 0.42390173 1782 Q14571 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 0 0 0 0 0 5 0 1 27.118 27.118 3 0.010378 4951 TMT1-4 80.18 38.527 77.639 71.51 55.444 59.038 55.887 60.233 73 73 58 58 58 58 1 1 1 1 1 1 3450 8165 1782 8092 12818 16647 16647 1 HLAQVGDSMDR Unmodified 1227.5666 0.56661958 1329 P55957;P55957-2 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 4 0 1 32.982 32.982 3 0.0001709 7533 TMT1-3 71.085 63.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8166 1329 8093 12819 16648 16648 1 HLCELLAQQF Unmodified 1257.6176 0.61759251 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 7 0 1 64.95 64.95 2 0.00053806 19427 TMT1-6 83.867 61.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8167 369 8094 12820 16649 16649 1 HLCEPGADGAETFADGVPR Unmodified 1997.8901 0.89013856 1800 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 0 3 0 1 48.037 48.037 3 4.4234E-10 14494 TMT1-2 100.82 99.134 54.205 42.306 51.169 26.978 88.772 59.295 51 44 51 29 88 58 1 1 1 1 1 1 5525.7 8168 1800 8095 12821 16650 16650 1 HLDFFEMLR Unmodified 1206.5856 0.5855641 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 8 0 1 66.89 66.89 3 0.0019179 20245 TMT1-7 89.08 47.427 23.164 36.011 43.737 35.778 51.204 14.529 22 36 44 36 51 15 1 1 1 1 1 1 5946.7 8169 3011 8096 12822 16651 16651 1 HLDHVAALFPGDVDR Unmodified 1660.8322 0.8321534 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 5 0 1 49.965 49.965 3 0.0045306 13981 TMT1-4 58.159 40.653 77.59 71.375 63.729 43.264 54.744 114.63 73 73 65 44 58 109 1 1 1 1 1 1 13078 8170 648 8097 12823 16652 16652 1 HLDLSNVAGYK Unmodified 1215.6248 0.62478638 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 7 0 1 51.019 51.019 3 2.0796E-05 13931 TMT1-6 112.93 83.867 351.4 360.44 507.36 521.41 481.51 571.49 332 369 512 513 502 549 1 1 1 1 1 1 49175 8171 2926 8098 12824 16653 16653 1 HLEEIVEK Unmodified 995.52876 0.52876073 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 4 0 1 43.437 43.437 3 0.0062526 11684 TMT1-3 80.165 36.653 184.3 234.17 205.9 142.33 206.65 219.03 174 235 210 145 211 211 1 1 1 1 1 1 18759 8172 2828 8099 12825 16654 16654 1 HLEEIVHVEQGR Unmodified 1444.7423 0.74227576 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 3 0 1 39.145 39.145 4 3.6434E-09 10965 TMT1-2 140.09 118.46 153.34 209.76 199.56 151.08 168.31 196.67 145 210 203 152 174 189 1 1 1 1 1 1 44726 8173 1552 8100 12826 16655 16655 1 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK Unmodified 3845.9074 0.90735834 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 6.8 0.748 2 2 1 92.894 92.894 4;5 3.7436E-40 30114 TMT1-7 126.18 111.99 206.09 227.15 156.16 148.56 148.9 247.33 194 229 164 147 157 236 7 7 7 7 7 7 157040 8174 971 8101 12827;12828;12829;12830;12831 16656;16657;16658;16659;16660;16661;16662 16662 7 HLEGLSEEAIMELNLPTGIPIVYELDK Unmodified 3022.5573 0.55729025 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 0 6 0 1 88.223 88.223 4 1.1543E-11 29150 TMT1-5 86.006 66.284 61.318 79.539 86.512 57.028 64.319 61.059 58 80 87 58 66 59 2 2 2 2 2 2 7333.5 8175 782 8102 12832 16663;16664 16664 2 HLEIIYAINQR Unmodified 1368.7514 0.75138388 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 7 0 2 51.891 51.891 3 0.0010817 14215 TMT1-6 59.198 38.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8176 648 8103 12833;12834 16665;16666 16665 2 HLEIIYEINQK Unmodified 1398.7507 0.75071518 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 6 0 1 55.6 55.6 2 0.00023968 16369 TMT1-5 106.4 32.238 46.704 50.4 42.732 36.292 27.083 46.131 44 51 44 36 29 44 1 1 1 1 1 1 5623.6 8177 515 8104 12835 16667 16667 1 HLEINPDHPIVETLR Unmodified 1781.9424 0.94243213 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 4.67 0.471 1 2 48.197 48.197 3;4 4.5313E-08 13533 TMT1-3 112.03 84.623 673.99 1038.6 898.73 695.73 898.33 993.46 638 1033 920 701 922 956 5 5 5 5 5 5 140710 8178 561 8105 12836;12837;12838 16668;16669;16670;16671;16672 16668 5 HLEINPDHSIIETLR Unmodified 1785.9373 0.93734675 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 4.5 0.5 1 1 51.88 51.88 4 2.206E-23 14701 TMT1-4 178.03 132.95 267.33 493.55 458.1 340.12 455.42 477.36 254 488 466 344 466 460 2 2 2 2 2 2 143800 8179 545 8106 12839;12840 16673;16674 16674 2 HLEQFATEGLR Unmodified 1299.6571 0.65714914 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 5 0 1 44.93 44.93 3 0.00016066 12000 TMT1-4 101.45 72.344 68.483 124.47 106.6 79.202 100.22 82.42 65 123 109 80 102 80 1 1 1 1 1 1 13430 8180 2968 8107 12841 16675 16675 1 HLETGGQK Unmodified 868.44028 0.44028008 2297 Q92538-3;Q92538-2;Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 5 0 1 26.781 26.781 3 0.024157 4796 TMT1-4 59.8 26.679 23.127 44.541 42.807 45.162 20.152 22.877 22 44 44 44 22 22 1 1 1 1 1 1 1114.3 8181 2297 8108 12842 16676 16676 1 HLETLMVIK Unmodified 1082.6158 0.6158016 3073 yes no 0 0 0 0 0 8 0 1 33.739 33.739 4 0.0028634 7184 TMT1-7 78.516 4.8998 443.24 713.74 642.86 466.82 688.42 680.72 420 709 655 474 701 657 1 1 1 1 1 1 25566 + 8182 3073 8109 12843 16677 16677 1 HLFCLYVVSK Unmodified 1264.6638 0.66381443 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 9 0 1 59.259 59.259 3 0.0066479 15435 TMT1-8 62.303 43.523 84.749 77.438 117.7 61.554 131.65 74.061 80 80 116 65 131 73 1 1 1 1 1 1 10174 8183 1219 8110 12844 16678 16678 1 HLFLTSK Unmodified 844.48069 0.48068833 2745 Q9NTK5;Q9NTK5-2;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 9 0 1 43.722 43.722 3 0.012156 9386 TMT1-8 70.268 21.764 84.475 107.97 137.93 100.69 137.18 73.903 80 109 138 102 138 73 1 1 1 1 1 1 7470.5 8184 2745 8111 12845 16679 16679 1 HLFTGPVLSK Unmodified 1097.6233 0.62332982 751 P16930 FAH Fumarylacetoacetase yes yes 0 0 0 0 0 9 0 1 50.496 50.496 3 0.00062703 11984 TMT1-8 82.417 54.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8185 751 8112 12846 16680 16680 1 HLGGIPWTYAEDAVPTLTPCR Unmodified 2353.1525 0.15250126 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 7 0 1 68.477 68.477 3 3.6743E-07 20779 TMT1-6 79.461 63.869 61.388 94.844 61.773 57.405 122.7 96.703 58 94 65 58 123 94 1 1 1 1 1 1 26481 8186 979 8113 12847 16681 16681 1 HLGIVDAFQQGK Unmodified 1311.6935 0.69353465 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 7.5 0.5 1 1 53.196 53.196 3 3.3926E-09 14896 TMT1-7 143.24 113.18 507.34 933.25 683.31 640.26 752.86 1070.1 481 920 712 636 783 1024 2 2 2 2 2 2 92346 8187 1222 8114 12848;12849 16682;16683 16683 2 HLGVCISVANNR Unmodified 1338.6827 0.68265239 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 7 0 1 40.68 40.68 3 0.015644 9839 TMT1-6 53.569 0 92.537 77.694 70.966 64.928 100.37 97.34 87 80 73 65 102 94 1 1 1 1 1 1 5552.9 8188 170 8115 12850 16684 16684 1 HLGYKPEEYK Unmodified 1262.6295 0.62953741 43 O00159-2;O00159-3;O00159 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 1 6 0 1 38.42 38.42 4 0.0023214 9488 TMT1-5 84.17 61.592 153.83 197.09 128.41 186.44 199.05 228.84 145 197 138 181 206 220 1 1 1 1 1 1 8708.6 8189 43 8116 12851 16685 16685 1 HLIEDLIIESSK Unmodified 1395.7609 0.76094551 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 5 0 1 67.214 67.214 3 0.0004391 20727 TMT1-4 86.313 64.081 68.817 102.74 68.826 81.924 75.195 137.5 65 102 73 80 80 131 1 1 1 1 1 1 19223 8190 1623 8117 12852 16686 16686 1 HLIEQDFPGMR Unmodified 1341.65 0.64995528 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 48.541 48.541 3 1.1626E-07 13486 TMT1-4 147.91 122.35 92.015 131.29 113.32 86.503 97.505 151.79 87 131 116 87 102 145 1 1 1 1 1 1 20298 8191 2654 8118 12853 16687 16687 1 HLILPEK Unmodified 848.51199 0.51198846 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 7 0 1 44.738 44.738 3 0.028975 11408 TMT1-6 60.788 8.1047 68.817 102.74 68.84 81.597 92.543 59.187 65 102 73 80 94 58 1 1 1 1 1 1 8761.5 8192 293 8119 12854 16688 16688 1 HLIPAANTGESK Unmodified 1236.6463 0.64625011 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 7 1 1 1 37.105 37.105 3 1.0152E-10 9005 TMT1-5 155.99 133.51 661.45 840.6 830.16 608.57 926.27 936.17 625 845 842 618 943 903 3 3 3 3 3 3 197750 8193 1422 8120 12855;12856 16689;16690;16691 16689 3 HLIVLINK Unmodified 948.61204 0.61203685 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 0 9 0 1 51.456 51.456 2 1.9026E-14 12391 TMT1-8 195.68 82.426 68.671 133.63 67.31 74.346 76.093 121.48 65 131 73 73 80 116 1 1 1 1 1 1 8105.3 8194 718 8121 12857 16692 16692 1 HLLEVEDLLQK Unmodified 1335.7398 0.73981614 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 64.675 64.675 3 0.0024276 19915 TMT1-5 76.843 36.925 84.871 101.52 76.755 73.773 76.632 106.55 80 102 80 73 80 102 1 1 1 1 1 1 11061 8195 651 8122 12858 16693 16693 1 HLLGAEHGDEPR Unmodified 1329.6426 0.64256171 2547 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 0 0 3 0 1 27.607 27.607 4 0.0014315 6374 TMT1-2 74.611 50.862 30.709 28.036 44.843 20.84 28.343 30.105 29 29 44 22 29 29 1 1 1 1 1 1 2506.2 8196 2547 8123 12859 16694 16694 1 HLLGVEDLLQK Unmodified 1263.7187 0.71868677 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 63.051 63.051 3 0.00034545 18739 TMT1-6 96.342 42.185 199.9 200.22 136.96 155.06 213.13 226.31 188 203 145 153 218 218 2 2 2 2 2 2 30090 8197 1546 8124 12860 16695;16696 16696 2 HLLIGVSSDR Unmodified 1095.6037 0.60365701 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 7 0 1 41.102 41.102 3 1.8245E-05 10012 TMT1-6 140.05 111.47 222.2 328.81 247.51 218.09 230.46 276.98 210 327 257 217 239 266 1 1 1 1 1 1 45856 8198 1038 8125 12861 16697 16697 1 HLLNVINENFGTLAFCR Unmodified 2017.0204 0.020364872 1227 P50579-3;P50579-2;P50579 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 0 9 0 1 70.477 70.477 3 3.967E-07 19880 TMT1-8 74.301 50.982 38.144 66.167 25.194 45.385 64.101 52.537 36 65 29 44 65 51 1 1 1 1 1 1 6422.2 8199 1227 8126 12862 16698 16698 1 HLLTLADVK Unmodified 1008.5968 0.59678072 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 8 0 1 52.393 52.393 3 0.0051988 14550 TMT1-7 75.294 29.298 53.509 134.27 90.17 72.12 122.02 96.722 51 131 94 73 123 94 1 1 1 1 1 1 9287.2 8200 1999 8127 12863 16699 16699 1 HLMLPDFDLLEDIESK Oxidation (M) 1929.9394 0.93938016 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 0 5 0 1 80.497 80.497 3 0.00037545 25967 TMT1-4 77.42 59.282 30.786 51.994 11.603 30.363 34.171 60.853 29 51 15 29 36 58 1 1 1 1 1 1 3965.1 8201 676 8128 12864 16700 16700 127 1 HLMLPDFDLLEDIESK Unmodified 1913.9445 0.94446554 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 5 0 2 83.031 83.031 3;4 7.8605E-09 26952 TMT1-4 111.35 94.859 46.27 104.24 69.913 58.043 62.953 99.474 44 102 73 58 66 95 2 2 2 2 2 2 13746 8202 676 8128 12865;12866 16701;16702 16702 2 HLNDETTSK Unmodified 1043.4884 0.48835248 2751 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 0 3 1 1 1 28.162 28.162 3 0.00036979 5598 TMT1-3 110.53 70.182 138.41 219.68 175.85 137.32 161.36 204.33 131 218 181 138 167 196 2 2 2 2 2 2 16852 8203 2751 8129 12867;12868 16703;16704 16704 2 HLNEIDLFHCIDPNDSK Unmodified 2065.9527 0.95273882 1835 Q15185-3;Q15185-4;Q15185 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 0 5 0 3 59.83 59.83 3;4 0.00032557 18261 TMT1-4 68.257 56.233 270.34 355.33 248.61 273.79 287.73 331.84 255 355 262 269 298 319 3 3 3 3 3 3 160030 8204 1835 8130 12869;12870;12871 16705;16706;16707 16707 3 HLNFLTSEQALADFAELIK Unmodified 2159.1263 0.12626973 1104 P42785;P42785-2 PRCP Lysosomal Pro-X carboxypeptidase yes no 0 0 0 0 0 8 0 1 87.055 87.055 4 0.00046226 28042 TMT1-7 57.173 33.132 23.125 44.535 43.157 37.326 28.888 38.618 22 44 44 37 29 37 2 2 2 2 1 2 4379.2 8205 1104 8131 12872 16708;16709 16709 2 HLNLGMNR Unmodified 953.48652 0.48651876 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 5.33 3.09 1 1 1 35.312 35.312 2;3 0.0008665 7715 TMT1-6 124.83 65.853 120.54 167.99 157.42 136.84 128.74 210.59 114 168 161 136 136 201 3 3 3 3 3 3 26416 8206 1851 8132 12873;12874;12875 16710;16711;16712 16711 3 HLNTIQK Unmodified 852.48175 0.48175096 2082 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 0 0 0 0 0 7 0 1 33.021 33.021 3 0.031536 6803 TMT1-6 58.981 8.0153 61.261 103.13 76.08 89.419 60.5 98.478 58 102 80 87 65 94 1 1 1 1 1 1 4128.3 8207 2082 8133 12876 16713 16713 1 HLPDNECIEK Unmodified 1253.571 0.57103625 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 38.963 38.963 3 0.0048426 9929 TMT1-3 73.327 49.476 91.988 138.77 111.49 117.37 147.63 173.81 87 138 116 116 152 167 1 1 1 1 1 1 14433 8208 1296 8134 12877 16714 16714 1 HLPETEAGR Unmodified 1008.4989 0.49885759 502 P06127 CD5 T-cell surface glycoprotein CD5 yes yes 0 0 0 0 0 3 0 1 26.46 26.46 3 0.0019748 5940 TMT1-2 59.931 34.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8209 502 8135 12878 16715 16715 1 HLPGVCK Unmodified 809.42179 0.42179324 2415 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 0 8 0 1 36.391 36.391 3 0.026063 8283 TMT1-7 62.842 41.94 53.81 87.616 79.152 42.191 62.929 90.946 51 87 80 44 65 87 1 1 1 1 1 1 4436.1 8210 2415 8136 12879 16716 16716 1 HLPNDPMFK Unmodified 1097.5328 0.53280025 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 6 1 1 1 48.798 48.798 3 0.019065 12139 TMT1-6 58.246 49.058 145.93 219.2 174.41 169.26 153.07 189.64 138 218 181 167 160 182 2 2 2 2 2 2 28172 8211 271 8137 12880;12881 16717;16718 16718 2 HLPPLVGR Unmodified 887.53412 0.53412088 2561 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 0 8 0 1 38.773 38.773 3 0.0020515 9143 TMT1-7 66.799 34.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8212 2561 8138 12882 16719 16719 1 HLPSTEPDPHVVR Unmodified 1482.7579 0.75792582 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 0 4 0 1 33.509 33.509 4 5.0027E-09 7705 TMT1-3 127.17 98.891 53.851 80.175 78.581 65.045 69.997 98.207 51 80 80 65 73 94 1 1 1 1 1 1 13750 8213 2540 8139 12883 16720 16720 1 HLPSVPGLLR Unmodified 1087.6502 0.65021327 908 P27338 MAOB Amine oxidase [flavin-containing] B yes yes 0 0 0 0 0 9 0 1 50.938 50.938 3 0.0020666 12134 TMT1-8 74.267 45.401 23.089 51.992 42.761 36.167 33.648 68.33 22 51 44 36 36 65 1 1 1 1 1 1 9468 8214 908 8140 12884 16721 16721 1 HLQAAVDR Unmodified 908.48281 0.48281359 2250 Q8TD16;Q8TD16-2 BICD2 Protein bicaudal D homolog 2 yes no 0 0 0 0 0 4 0 1 25.948 25.948 3 0.017011 4815 TMT1-3 65.224 16.469 15.89 14.517 22.205 14.538 28.376 37.566 15 15 22 15 29 36 1 1 1 1 1 1 2600.4 8215 2250 8141 12885 16722 16722 1 HLQIEIEGLIDQMIDK Unmodified 1893.987 0.98699906 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 2 85.531 85.531 3;4 1.1764E-08 28067 TMT1-5 108.56 84.758 53.853 80.181 78.231 72.876 61.518 90.987 51 80 80 72 65 87 2 2 2 2 2 2 11787 8216 228 8142 12886;12887 16723;16724 16724 2 HLQINQTFEELR Unmodified 1526.7841 0.78414057 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 5 0 2 50.22 50.22 2;3 6.6378E-07 14100 TMT1-4 119.27 66.694 200.26 284.51 185.09 199.82 237.71 181.9 189 283 196 197 242 177 2 2 2 2 2 2 43915 8217 1093;1253 8143 12888;12889 16725;16726 16726 2 HLQLAIR Unmodified 849.51847 0.51847082 612;732;2343;611 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2;P16104;Q93077;Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;H2AFX;HIST1H2AC;H2AFV;H2AFZ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2AX;Histone H2A type 1-C;Histone H2A.V;Histone H2A.Z no no 0 0 0 0 0 6.6 2.87 1 1 2 1 39.136 39.136 3 7.4968E-09 8970 TMT1-7 175.93 72.954 15198 30618 18347 18532 24637 25597 14410 30028 19488 18380 25208 24672 12 12 12 12 12 12 3869000 8218 612;732;2343;611 8144 12890;12891;12892;12893;12894 16727;16728;16729;16730;16731;16732;16733;16734;16735;16736;16737;16738 16732 12 HLQLAIRGDEELDSLIK Unmodified 1949.0582 0.058190166 611 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 1 6 0 1 61.238 61.238 4 7.5144E-14 18561 TMT1-5 123.02 78.729 107.66 241.17 96.566 142.76 123.45 204.35 102 235 109 138 131 195 1 1 1 1 1 1 24720 8219 611 8145 12895 16739 16739 1 HLQLAIRNDEELNK Unmodified 1691.8955 0.89548193 612;732;2343 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2;P16104;Q93077 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;H2AFX;HIST1H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2AX;Histone H2A type 1-C no no 0 0 0 0 1 6 0 1 44.043 44.043 4 0.00016061 11779 TMT1-5 83.087 46.24 199.71 396.31 183 144.85 145.22 451.04 189 388 198 145 160 427 1 1 1 1 1 1 20368 8220 612;732;2343 8146 12896 16740 16740 1 HLQLAVR Unmodified 835.50282 0.50282075 2134 Q8IUE6 HIST2H2AB Histone H2A type 2-B yes yes 0 0 0 0 0 6.25 3.11 1 1 1 1 35.175 35.175 3 1.6908E-08 7637 TMT1-6 170.94 82.208 606.86 910.39 567.38 541.87 714.37 799.37 573 903 600 539 733 769 5 5 5 5 5 5 207200 8221 2134 8147 12897;12898;12899;12900 16741;16742;16743;16744;16745 16742 5 HLSAEDFSR Unmodified 1060.4938 0.49377221 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 5 1 1 1 35.729 35.729 3 1.1425E-20 8591 TMT1-3 196.32 177.19 192.45 245.34 268.59 225.08 257 286.88 182 247 272 225 265 276 2 2 2 2 2 2 56170 8222 1623 8148 12901;12902 16746;16747 16746 2 HLSASQK Unmodified 769.40825 0.40825167 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 7.33 1.25 1 1 1 25.442 25.442 3 0.001866 4168 TMT1-8 113.1 22.116 256.97 208.93 276.83 203.25 287.62 185.8 242 217 277 206 290 182 4 4 4 4 4 4 17878 8223 677 8149 12903;12904;12905 16748;16749;16750;16751 16751 4 HLSCTVGDLQTK Unmodified 1357.666 0.66599927 2456 Q96T51;Q96T51-2;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 41.046 41.046 3 1.1415E-07 10593 TMT1-5 120.53 101.47 138.95 181.25 117.68 85.967 112.19 151.37 131 181 123 87 116 145 1 1 1 1 1 1 10136 8224 2456 8150 12906 16752 16752 1 HLSFYIFDR Unmodified 1196.5978 0.59784335 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 8 0 1 59.306 59.306 3 0.002811 17254 TMT1-7 82.749 44.663 54.278 26.32 52.427 20.26 35.149 45.901 51 29 51 22 36 44 1 1 1 1 1 1 11163 8225 1786 8151 12907 16753 16753 1 HLSSCAAPAPLTSAER Unmodified 1666.8097 0.80970339 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 6.5 1.5 1 1 37.012 37.012 3 8.3916E-09 8869 TMT1-4 110.97 91.761 154.75 226.81 129.02 132.73 147.2 196.21 146 225 138 131 153 188 2 2 2 2 2 2 59567 8226 2013 8152 12908;12909 16754;16755 16754 2 HLSSGDLLR Unmodified 996.53524 0.53524309 2881 Q9UIJ7;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 6 0 1 37.834 37.834 3 0.001925 9299 TMT1-5 89.029 45.221 53.774 87.515 85.337 73.531 62.294 67.512 51 87 87 73 65 65 1 1 1 1 1 1 10349 8227 2881 8153 12910 16756 16756 1 HLSVNDLPVGR Unmodified 1205.6517 0.65166983 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 44.76 44.76 3 1.7401E-17 11927 TMT1-5 186.74 163.06 530.85 693.57 541.33 455.75 494.64 642.54 501 694 560 455 514 616 5 5 5 5 5 5 137050 8228 949 8154 12911;12912;12913;12914;12915 16757;16758;16759;16760;16761 16759 5 HLTALIK Unmodified 794.50142 0.50142377 148 O15439-2;O15439 ABCC4 Multidrug resistance-associated protein 4 yes no 0 0 0 0 0 9 0 1 43.63 43.63 3 0.018174 9339 TMT1-8 64.803 29.703 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8229 148 8155 12916 16762 16762 1 HLTAQVR Unmodified 823.46644 0.46643525 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 9 0 1 24.742 24.742 3 0.006107 4121 TMT1-8 80.462 49.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8230 1805 8156 12917 16763 16763 1 HLTASEAK Unmodified 855.44503 0.4450311 1065 P39748-2;P39748 FEN1 Flap endonuclease 1 yes no 0 0 0 0 0 6.5 1.5 1 1 28.192 28.192 3 0.00037366 5520 TMT1-4 84.476 64.146 92.342 69.598 110.52 62.272 116.21 65.974 87 73 109 65 116 65 1 1 1 1 1 1 1892.3 8231 1065 8157 12918;12919 16764;16765 16764 2 HLTGEFEK Unmodified 959.47125 0.47124585 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 7 0 1 39.194 39.194 3 0.0034264 9241 TMT1-6 90.657 55.849 272.72 459.79 482.83 291.36 470.97 424.69 259 457 485 301 477 411 1 1 1 1 1 1 23270 8232 1445 8158 12920 16766 16766 1 HLTYENVER Unmodified 1159.5622 0.56218613 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 4.5 1.12 1 1 1 1 32.394 32.394 3 9.6203E-06 7202 TMT1-5 153.05 136.37 378.12 500.78 405.93 420.23 429.38 428.01 357 501 422 414 443 413 6 6 6 6 6 6 113670 8233 1880 8159 12921;12922;12923;12924 16767;16768;16769;16770;16771;16772 16772 6 HLVDEPQNLIK Unmodified 1304.7089 0.70885036 29 CON__P02769 yes yes 0 0 0 0 0 5 0 1 48.625 48.625 3 4.6476E-05 13490 TMT1-4 106.4 65 103.67 109.19 878.7 57.261 98.594 159.22 102 123 821 102 102 152 1 1 1 1 1 1 24276 + 8234 29 8160 12925 16773 16773 1 HLVDPIDDLFLAAK Unmodified 1565.8453 0.84534384 2089 Q7Z3D6-5;Q7Z3D6-3;Q7Z3D6;Q7Z3D6-2;Q7Z3D6-4 C14orf159 UPF0317 protein C14orf159, mitochondrial yes no 0 0 0 0 0 6 0 1 75.413 75.413 3 2.3137E-05 24127 TMT1-5 91.914 64.505 23.005 51.756 57.226 51.826 26.918 30.146 22 51 58 51 29 29 1 1 1 1 1 1 4157.3 8235 2089 8161 12926 16774 16774 1 HLVFPLLEFLSVK Unmodified 1540.9017 0.90173651 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 9 0 2 86.822 86.822 3;4 9.7504E-07 26136 TMT1-8 107.18 68.388 184.35 215.97 212.5 212.93 209.43 226.41 174 218 218 210 217 218 3 3 3 3 3 3 13474 8236 1353 8162 12927;12928 16775;16776;16777 16776 3 HLVGVCYTEDEAK Unmodified 1519.6977 0.69769333 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 43.087 43.087 3 0.0024894 11568 TMT1-3 66.989 61.329 115.13 167.16 165.66 99.352 120.22 112.76 109 167 167 102 123 109 1 1 1 1 1 1 13389 8237 569 8163 12929 16778 16778 1 HLVLLDTAQAAAAGHR Unmodified 1642.8903 0.89033698 87 O00754-2;O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 0 0 0 0 0 8 0 1 46.703 46.703 4 4.6909E-07 12291 TMT1-7 100.11 86.148 61.489 72.46 63.766 42.803 79.119 75.56 58 73 65 44 80 73 1 1 1 1 1 1 8480.2 8238 87 8164 12930 16779 16779 1 HLVPGAPFLLQALVR Unmodified 1629.9719 0.97188176 610 P0C0L4-2;P0C0L5;P0C0L4 C4A;C4B Complement C4-A;Complement C4 beta chain;Complement C4-A alpha chain;C4a anaphylatoxin;C4b-A;C4d-A;Complement C4 gamma chain;Complement C4-B;Complement C4 beta chain;Complement C4-B alpha chain;C4a anaphylatoxin;C4b-B;C4d-B;Complement C4 gamma chain yes no 0 0 0 0 0 9 0 1 72.734 72.734 3 0.0041111 20753 TMT1-8 53.136 19.058 54.063 73.209 48.923 35.785 34.435 45.921 51 73 51 36 36 44 1 1 1 1 1 1 5097.7 8239 610 8165 12931 16780 16780 1 HLVYESDQNK Unmodified 1231.5833 0.5833155 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-15 CALU Calumenin yes no 0 0 0 0 0 4 0 1 34.574 34.574 3 0.0075756 8135 TMT1-3 66.435 34.426 77.018 116.19 121.89 86.13 90.209 121.08 73 116 123 87 94 116 1 1 1 1 1 1 7025.3 8240 209 8166 12932 16781 16781 1 HLVYESDQNKDGK Unmodified 1531.7267 0.72668527 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-15 CALU Calumenin yes no 0 0 0 0 1 5 0 1 34.977 34.977 4 8.9394E-11 8038 TMT1-4 131.13 113.64 633.98 556.08 457.48 471.31 339.74 624.58 596 570 476 462 366 595 1 1 1 1 1 1 33438 8241 209 8167 12933 16782 16782 1 HLWDYTFGPEK Unmodified 1391.651 0.65100113 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 4 3 1 1 59.279 59.279 3 5.148E-07 17231 TMT1-6 130.01 97.483 899.29 1192.8 954.18 821.07 1032.4 1125 849 1193 986 821 1060 1083 2 2 2 2 2 2 205490 8242 1380 8168 12934;12935 16783;16784;16785 16785 3 HLYDFVGNIR Unmodified 1232.6302 0.63020611 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 7 0 1 53.122 53.122 3 9.1314E-05 14731 TMT1-6 116.3 83.08 61.316 79.533 86.905 48.223 124.44 58.277 58 80 87 51 123 58 1 1 1 1 1 1 16389 8243 2968 8169 12936 16786 16786 1 HLYHQAFPTPK Unmodified 1337.6881 0.68805534 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 8 0 1 37.775 37.775 4 0.03946 8697 TMT1-7 42.336 16.677 184.72 211.6 154.08 121.52 198.38 243.78 174 213 160 123 203 234 1 1 1 1 1 1 6737.3 8244 2284 8170 12937 16787 16787 1 HLYLLYEK Unmodified 1077.5859 0.58588168 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 0 8 0 1 53.122 53.122 3 0.0048932 14762 TMT1-7 85.212 46.19 60.427 170.96 158.84 83.364 120.15 136.22 58 167 160 87 123 131 1 1 1 1 1 1 12085 8245 614 8171 12938 16788 16788 1 HLYLTEK Unmodified 902.48617 0.48616764 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 6 0 1 40.208 40.208 3 0.0040133 10237 TMT1-5 97.068 24.029 91.913 146.11 117.89 133.93 118.63 112.81 87 145 123 131 123 109 1 1 1 1 1 1 8299.7 8246 1977 8172 12939 16789 16789 1 HLYTLDGGDIINALCFSPNR Unmodified 2275.1056 0.10555106 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 7.5 0.5 2 2 72.233 72.233 3;4 6.1411E-24 22308 TMT1-6 137.45 121.93 209.05 260.76 170.58 192.16 225.76 296.3 197 261 181 189 234 284 5 5 5 5 5 5 75708 8247 1478 8173 12940;12941;12942;12943 16790;16791;16792;16793;16794 16790 5 HMAPEFCSLEEGLPYLDMVIAETLR Unmodified 2920.3809 0.38092257 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 6 0 1 94.121 94.121 3 0.0006276 31037 TMT1-5 50.029 37.833 15.93 14.631 15.272 0 7.322 0 15 15 15 0 7 0 1 1 1 0 1 0 1917.2 8248 876 8174 12944 16795 16795 1 HMCSVLQHK Unmodified 1138.5376 0.53756805 3041 Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 0 8 0 1 31.686 31.686 4 0.0015947 6424 TMT1-7 88.294 69.514 138.9 134.7 165.42 145.71 155.25 157.6 131 138 167 145 160 152 1 1 1 1 1 1 6043.4 8249 3041 8175 12945 16796 16796 1 HMHIADVSK Unmodified 1036.5124 0.51239916 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 6 0 1 33.788 33.788 4 0.0044635 7688 TMT1-5 74.301 64.014 232.4 243.3 229.4 204.34 205.47 322.46 219 247 235 203 216 308 1 1 1 1 1 1 9124.4 8250 1878 8176 12946 16797 16797 1 HMQANPEPPK Unmodified 1147.5444 0.54442757 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 5 0 1 30.706 30.706 3 0.0065195 6308 TMT1-4 68.893 44.511 115.09 167.04 172.95 130.14 145.45 250.62 109 167 175 131 153 239 2 2 2 2 2 2 10519 8251 1851 8177 12947 16798;16799 16798 2 HMQANPEPPKK Unmodified 1275.6394 0.63939059 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 1 6.5 0.5 1 1 30.903 30.903 4 0.01027 6549 TMT1-5 60.255 57.305 365.84 491.61 494.71 311.36 415.95 538.19 346 493 499 319 429 516 3 3 3 3 3 3 22032 8252 1851 8178 12948;12949 16800;16801;16802 16800 3 HMYHSLYLK Unmodified 1190.5906 0.59064948 1523 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 0 8.5 0.5 1 1 39.492 39.492 4 0.0051292 9354 TMT1-7 72.547 43.591 92.016 162.59 86.532 111.29 143.26 96.116 87 160 94 109 145 94 2 2 2 2 2 2 5333.5 8253 1523 8179 12950;12951 16803;16804 16803 2 HNDDEQYAWESSAGGSFTVR Unmodified 2254.9516 0.95155284 545;561 P08238;P07900;P07900-2;Q14568 HSP90AB1;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 0 0 0 0 0 3.33 0.471 2 1 50.307 50.307 3;4 8.0506E-19 15460 TMT1-2 128.94 125.93 277 317.73 243.51 268.03 319.61 294.69 261 320 255 264 327 285 8 8 8 8 8 8 99799 8254 561;545 8180 12952;12953;12954 16805;16806;16807;16808;16809;16810;16811;16812 16806 8 HNESVVK Unmodified 811.41882 0.41881635 74 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 0 4.5 0.5 1 1 25.291 25.291 3 0.005776 4387 TMT1-4 56.011 35.109 30.778 44.418 19.318 37.387 43.031 37.148 29 44 22 36 44 36 1 1 1 1 1 1 2618.4 8255 74 8181 12955;12956 16813;16814 16814 2 HNIICLQNDHK Unmodified 1390.6776 0.67756701 56 O00233;O00233-2 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 0 6 0 1 35.527 35.527 4 0.00023995 8371 TMT1-5 97.452 67.516 161.27 219.05 121.2 147.95 176.08 187.92 152 218 131 145 181 181 1 1 1 1 1 1 16343 8256 56 8182 12957 16815 16815 1 HNIMDFAMPYFIQVMK Unmodified 1983.9409 0.94091726 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 83.934 83.934 3 5.2814E-06 25052 TMT1-8 78.932 53.612 30.731 35.653 34.643 45.235 42.12 53.164 29 36 36 44 44 51 1 1 1 1 1 1 7161.9 8257 1540 8183 12958 16816 16816 1 HNIQALLK Unmodified 935.55525 0.55525025 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 8 0 1 43.575 43.575 3 0.00094394 11098 TMT1-7 121.99 10.982 557.02 876.8 677.29 602.87 726.33 948.27 527 870 702 601 752 909 2 2 2 2 2 2 112690 8258 635 8184 12959 16817;16818 16818 2 HNIVDETLK Unmodified 1067.5611 0.56112349 2232 Q8NHP6 MOSPD2 Motile sperm domain-containing protein 2 yes yes 0 0 0 0 0 4 0 1 42.001 42.001 3 0.0045242 11114 TMT1-3 53.028 28.173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8259 2232 8185 12960 16819 16819 1 HNKPEVEVR Unmodified 1106.5833 0.58325592 1351 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 1 4 1.87 1 1 1 1 27.352 27.352 4 0.00013224 5100 TMT1-4 133.99 96.568 2518.6 3244.6 2797.5 2353 2711.1 3101.5 2378 3253 2874 2352 2797 2982 7 7 7 7 7 7 111630 8260 1351 8186 12961;12962;12963;12964 16820;16821;16822;16823;16824;16825;16826 16824 7 HNLEHAFNVAER Unmodified 1435.6957 0.69565991 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 34.961 34.961 4 8.9157E-06 8019 TMT1-4 109.15 80.437 99.708 122.65 89.939 87.73 106.35 105.7 94 123 94 87 109 102 1 1 1 1 1 1 7925.3 8261 651 8187 12965 16827 16827 1 HNLEQDLVR Unmodified 1122.5782 0.57817054 2082 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 0 0 0 0 0 3 0 1 36.581 36.581 3 0.0012694 9925 TMT1-2 94.804 56.028 85.007 61.966 87.462 56.705 78.516 74.512 80 65 87 58 80 72 1 1 1 1 1 1 16459 8262 2082 8188 12966 16828 16828 1 HNLLQACK Unmodified 982.50183 0.50183448 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 8 0 1 35.569 35.569 3 0.016982 7898 TMT1-7 65.246 41.478 160.48 276.21 205.6 192.35 221.26 335.87 152 273 214 191 231 321 1 1 1 1 1 1 7514.7 8263 1790 8189 12967 16829 16829 1 HNQLPLVIEFTEQTAPK Unmodified 1964.0367 0.036726442 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 6 0 1 63.809 63.809 4 9.2844E-06 19548 TMT1-5 84.14 59.602 107.67 175.38 149.34 91.175 141.76 166.51 102 174 152 94 145 160 1 1 1 1 1 1 57961 8264 530 8190 12968 16830 16830 1 HNQRPTFR Unmodified 1054.5421 0.54205981 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 0 1 19.684 19.684 3 0.040684 3383 TMT1-7 60.895 39.948 2.0725 5.0452 8.077 5.9671 5.8246 5.1638 2 5 8 6 6 5 1 1 1 1 1 1 665.25 8265 831 8191 12969 16831 16831 1 HNSSGSILFLGR Unmodified 1286.6731 0.67313356 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 8.5 0.5 1 1 45.54 45.54 3 1.2926E-09 10040 TMT1-8 140.01 111.99 268.37 430.61 336.41 314.73 331.42 314.61 254 427 349 312 341 304 3 3 3 3 3 3 66281 8266 967 8192 12970;12971 16832;16833;16834 16833 3 HNYEGTLR Unmodified 988.47264 0.47264284 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 3 0 1 24.937 24.937 3 0.014575 5314 TMT1-2 67.494 42.368 30.812 35.878 20.858 14.323 44.055 38.185 29 36 22 15 44 37 1 1 1 1 1 1 4497.3 8267 2339 8193 12972 16835 16835 1 HNYGVGESFTVQR Unmodified 1492.7059 0.70589025 467;802 Q29974;P04229;Q30167;Q30134;Q30154;P13760;Q9TQE0;P79483;P13761;P20039 HLA-DRB1;HLA-DRB5;HLA-DRB3 HLA class II histocompatibility antigen, DRB1-16 beta chain;HLA class II histocompatibility antigen, DRB1-1 beta chain;HLA class II histocompatibility antigen, DRB1-10 beta chain;HLA class II histocompatibility antigen, DRB1-8 beta chain;HLA class II histocompatibility antigen, DR beta 5 chain;HLA class II histocompatibility antigen, DRB1-4 beta chain;HLA class II histocompatibility antigen, DRB1-9 beta chain;HLA class II histocompatibility antigen, DR beta 3 chain;HLA class II histocompatibility antigen, DRB1-7 beta chain;HLA class II histocompatibility antigen, DRB1-11 beta chain no no 0 0 0 0 0 5 0 1 38.688 38.688 3 0.002339 9542 TMT1-4 67.887 50.52 115.44 160.46 119.39 78.326 106.27 120.62 109 160 123 80 109 116 1 1 1 1 1 1 9605.5 8268 467;802 8194 12973 16836 16836 1 HPDADSLYVEK Unmodified 1272.5986 0.59863121 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 42.329 42.329 3 0.0033398 11198 TMT1-3 73.781 42.596 107.86 162.96 127.64 84.93 135.78 135.77 102 162 131 87 138 131 1 1 1 1 1 1 18212 8269 1297 8195 12974 16837 16837 1 HPDEAAFFDTASTGK Unmodified 1592.7107 0.71070086 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 4.5 0.5 1 1 49.339 49.339 3 2.5745E-12 13726 TMT1-4 129.38 108.54 708.31 985.35 765.45 597.96 649.81 929.13 669 983 790 600 678 889 4 4 4 4 4 4 215950 8270 437 8196 12975;12976 16838;16839;16840;16841 16841 4 HPDVEVDGFSELR Unmodified 1498.7052 0.70522155 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 2 0 1 50.197 50.197 3 0.0018365 15028 TMT1-1 70.889 44.906 38.062 43.273 58.398 35.229 33.948 60.859 36 44 58 36 36 58 1 1 1 1 1 1 13012 8271 606 8197 12977 16842 16842 1 HPECYVCTDCGTNLK Unmodified 1852.7542 0.7542387 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 5 0 2 41.696 41.696 3;4 1.1704E-10 10720 TMT1-4 121.48 96.683 268.36 314.03 435.93 253.6 302.77 347.4 254 319 432 261 312 334 2 2 2 2 2 2 81108 8272 41 8198 12978;12979 16843;16844 16843 2 HPEELSLLR Unmodified 1092.5928 0.59275797 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 4.6 2.06 1 1 1 1 1 43.23 43.23 3 6.3139E-29 11579 TMT1-3 210.6 108.88 2851.2 4576.2 3652.7 2770.3 3734.2 3573.3 2699 4539 3757 2798 3809 3452 8 8 8 8 8 8 1218200 8273 2112 8199 12980;12981;12982;12983;12984 16845;16846;16847;16848;16849;16850;16851;16852 16846 8 HPELADK Unmodified 808.40792 0.40791731 1137 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 0 3.5 0.5 1 1 30.977 30.977 3 0.0029317 6705 TMT1-3 101.41 43.218 525.63 953.53 478.01 555.94 772.61 729.48 497 937 520 548 787 705 2 2 2 2 2 2 52342 8274 1137 8200 12985;12986 16853;16854 16854 2 HPELNISEEGITK Unmodified 1465.7413 0.7412727 759 P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 0 4 0 1 47.414 47.414 3 1.1266E-05 13255 TMT1-3 82.102 54.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8275 759 8201 12987 16855 16855 1 HPFAQAVGR Unmodified 981.51445 0.51444807 207 O43837;O43837-3;O43837-2 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 0 8 0 1 30.225 30.225 3 0.00027976 5868 TMT1-7 119.41 85.02 77.866 40.844 43.162 35.98 42.289 60.621 73 44 44 36 44 58 1 1 1 1 1 1 5678.6 8276 207 8202 12988 16856 16856 1 HPFFLDDR Unmodified 1045.4981 0.49812931 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 6 0 1 45.827 45.827 3 0.0015358 12497 TMT1-5 102.51 72.122 37.496 119.41 89.038 119.36 112.78 89.524 36 116 94 116 116 87 1 1 1 1 1 1 10788 8277 1714 8203 12989 16857 16857 1 HPFLTALK Unmodified 925.53854 0.53853756 978;977 P31749;P31749-2;P31751-2;P31751 AKT1;AKT2 RAC-alpha serine/threonine-protein kinase;RAC-beta serine/threonine-protein kinase no no 0 0 0 0 0 9 0 1 47.937 47.937 3 0.046781 10943 TMT1-8 40.778 16.623 99.489 138.22 113.57 70.552 131.24 74.073 94 138 116 73 131 73 1 1 1 1 1 1 8608.6 8278 977;978 8204 12990 16858 16858 1 HPGSFDVVHVK Unmodified 1220.6302 0.63020611 1440 P62701;P22090 RPS4X;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 0 0 0 0 0 6.5 0.5 1 1 39.868 39.868 4 0.0038536 10003 TMT1-5 68.536 52.646 169 326.18 173.73 207.99 246.01 294.66 160 320 188 204 254 283 2 2 2 2 2 2 27264 8279 1440 8205 12991;12992 16859;16860 16859 2 HPHDIIDDINSGAVECPAS Unmodified 2045.9113 0.91126793 951 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 0 2.5 0.5 1 1 52.357 52.357 3 2.2843E-14 15898 TMT1-1 116.35 102.52 91.754 169.41 124.88 139.9 185.83 188.71 87 167 131 138 190 182 4 4 4 4 4 4 66593 8280 951 8206 12993;12994 16861;16862;16863;16864 16861 4 HPLLHIQK Unmodified 984.58688 0.58688473 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 9 0 1 36.235 36.235 3 0.0057429 6845 TMT1-8 68.787 28.742 84.87 101.52 76.967 69.02 96.247 89.996 80 102 80 69 98 87 1 1 1 1 1 1 4971 8281 2521 8207 12995 16865 16865 1 HPPAEPSR Unmodified 889.44061 0.44061443 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 0 3 0 1 20.246 20.246 3 0.016693 3566 TMT1-2 65.465 31.95 15.843 44.609 4.4942 7.2619 6.4456 15.806 15 43 7 7 7 15 1 1 1 1 1 1 1223.2 8282 2198 8208 12996 16866 16866 1 HPPEASVQIHQVSR Unmodified 1583.8168 0.81683768 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 4 0 1 30.047 30.047 4 1.9902E-07 6417 TMT1-3 105.78 86.517 61.019 133.75 90.87 56.251 91.84 113.57 58 131 94 58 94 109 1 1 1 1 1 1 8285.8 8283 1797 8209 12997 16867 16867 1 HPQYNQR Unmodified 941.44676 0.44676244 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 3 0 1 17.009 17.009 3 0.003748 3119 TMT1-2 98.133 93.996 4.2563 5.0037 1.7529 2.0072 3.9492 4.1513 4 5 2 2 4 4 1 1 1 1 1 1 582.33 8284 564 8210 12998 16868 16868 1 HPYFYAPELLFFAK Unmodified 1741.8868 0.88681473 28 CON__P02768-1;P02768 ALB Serum albumin yes no 0 0 0 0 0 9 0 2 77.064 77.064 3;4 2.0683E-12 22405 TMT1-8 124.86 98.727 276.8 300.99 290.91 246.61 320.41 300 261 305 297 247 327 290 3 3 3 3 3 3 76083 + 8285 28 8211 12999;13000 16869;16870;16871 16869 3 HQAECALNER Unmodified 1226.5462 0.54621849 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 0 0 0 0 2.5 0.5 1 1 24.611 24.611 3 0.0099692 4941 TMT1-1 64.224 51.432 14.715 38.052 19.374 46.531 21.613 30.914 14 37 22 44 22 29 2 2 2 2 1 1 5829.2 8286 187 8212 13001;13002 16872;16873 16872 2 HQAFEAELSANQSR Unmodified 1586.7437 0.74373232 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 36.339 36.339 3 1.8816E-07 8838 TMT1-3 108.66 104.13 61.183 118.02 76.635 56.932 100.73 97.33 58 116 80 58 102 94 1 1 1 1 1 1 17155 8287 1737 8213 13003 16874 16874 1 HQALQAEIAGHEPR Unmodified 1555.7855 0.78553755 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 32.759 32.759 4 0.0019699 7397 TMT1-3 64.842 49.966 115.5 136.89 128.81 92.749 181.25 111.02 109 138 131 95 181 109 2 2 2 2 2 2 11781 8288 1737 8214 13004 16875;16876 16875 2 HQAQIDHYLGLANK Unmodified 1606.8216 0.82158871 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 5 2.35 1 2 1 45.436 45.436 3;4 2.255E-11 11643 TMT1-6 128.54 102.56 2999.1 4220.2 3981 2980.9 3872 4307 2837 4219 4050 3011 3974 4144 8 8 8 8 8 8 398180 8289 2708;2709 8215 13005;13006;13007;13008 16877;16878;16879;16880;16881;16882;16883;16884 16882 8 HQDDLQDVIGR Unmodified 1294.6266 0.6265773 2026 Q6P1N9 TATDN1 Putative deoxyribonuclease TATDN1 yes yes 0 0 0 0 0 2 0 1 41.708 41.708 3 0.0045991 11697 TMT1-1 69.554 36.714 46.738 42.942 43.199 35.845 49.368 67.881 44 44 44 36 51 65 1 1 1 1 1 1 6389.4 8290 2026 8216 13009 16885 16885 1 HQEGEIFDTEK Unmodified 1331.5994 0.59935949 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 0 2 0 1 41.12 41.12 3 0.00099449 11395 TMT1-1 86.772 59.803 91.64 176.65 137.83 179.64 123.59 151.04 87 174 145 174 131 145 1 1 1 1 1 1 18016 8291 1573 8217 13010 16886 16886 1 HQGAEELLDEESR Unmodified 1511.6852 0.68521439 1953 Q567U6 CCDC93 Coiled-coil domain-containing protein 93 yes yes 0 0 0 0 0 2 0 1 38.715 38.715 3 0.0065126 10460 TMT1-1 42.682 30.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8292 1953 8218 13011 16887 16887 1 HQGLPQEVLNENLLR Unmodified 1758.9377 0.9376811 26 CON__P02662 yes yes 0 0 0 0 0 5 0 1 54.033 54.033 3 0.00017479 15594 TMT1-4 59.884 39.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8293 26 8219 13012 16888 16888 1 HQGVMVGMGQK Oxidation (M) 1186.5587 0.55869743 1357;1479;1488;1952 P60709;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 1 0 0 7.03 1.8 2 3 15 6 5 33.219 33.219 3;4 2.3431E-16 7807 TMT1-6 146.11 128.52 11420 15758 11447 10173 11923 18509 10781 15714 11925 10137 12453 17682 64 64 64 64 64 64 1276000 8294 1357;1479;1488;1952 8220 13013;13014;13015;13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031;13032;13033;13034;13035;13036;13037;13038;13039;13040;13041;13042;13043 16889;16890;16891;16892;16893;16894;16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928;16929;16930;16931;16932;16933;16934;16935;16936;16937;16938;16939;16940;16941;16942;16943;16944;16945;16946;16947;16948;16949;16950;16951;16952;16953;16954;16955;16956;16957;16958;16959;16960;16961 16918 219;220 73 HQGVMVGMGQK Unmodified 1170.5638 0.5637828 1357;1479;1488;1952 P60709;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 0 6.89 2.23 1 1 2 4 1 34.272 34.272 2;3 3.2393E-09 8296 TMT1-6 166.09 127.28 10506 17764 11556 9569.8 12690 22870 9939 17543 12108 9604 13303 21794 15 15 15 15 15 15 2810000 8295 1357;1479;1488;1952 8220 13044;13045;13046;13047;13048;13049;13050;13051;13052 16962;16963;16964;16965;16966;16967;16968;16969;16970;16971;16972;16973;16974;16975;16976 16967 15 HQGVMVGMGQK 2 Oxidation (M) 1202.5536 0.55361205 1357;1479;1488;1952 P60709;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 2 0 0 7.12 0.816 7 8 10 30.193 30.193 3;4 1.7945E-05 5089 TMT1-7 113.44 100.46 4995.9 5926.4 4354.9 4061.7 4904.4 6666.5 4708 5955 4544 4038 5086 6385 69 69 69 69 69 69 260580 8296 1357;1479;1488;1952 8220 13053;13054;13055;13056;13057;13058;13059;13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075;13076;13077 16977;16978;16979;16980;16981;16982;16983;16984;16985;16986;16987;16988;16989;16990;16991;16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049 17021 219;220 73 HQIVEVAGDDK Unmodified 1209.599 0.59896556 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 37.641 37.641 3 0.0037227 10432 TMT1-2 72.496 47.154 291.87 409.27 372.34 335.79 376.51 344.23 276 409 382 334 386 333 2 2 2 2 2 2 48321 8297 1616 8221 13078;13079 17050;17051 17050 2 HQIVEVAGDDKYGR Unmodified 1585.7849 0.78486885 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 1 5 0 1 37.048 37.048 4 0.00045777 8856 TMT1-4 77.367 63.015 200.93 294.11 245.07 200.59 181 309.31 190 293 252 200 192 295 1 1 1 1 1 1 28220 8298 1616 8222 13080 17052 17052 1 HQLDEIICWLTK Unmodified 1554.7864 0.78644876 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 8 0 1 82.244 82.244 3 0.0090041 26251 TMT1-7 60.345 40.506 23.218 44.795 27.27 29.255 43.405 37.137 22 44 29 29 44 36 1 1 1 1 1 1 6826.4 8299 1138 8223 13081 17053 17053 1 HQLEETKK Unmodified 1011.5349 0.53490874 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 1 5 0 1 28.293 28.293 4 0.033906 5436 TMT1-4 51.346 21.539 146.66 118.69 136.97 100.77 135.86 112.32 138 123 138 102 138 109 1 1 1 1 1 1 3651.9 8300 839 8224 13082 17054 17054 1 HQLLEADISAHEDR Unmodified 1632.7856 0.78559713 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 37.232 37.232 4 0.03324 10162 TMT1-2 40.493 28.111 68.703 117.53 75.544 81.221 91.241 97.6 65 116 80 80 94 94 1 1 1 1 1 1 9320.3 8301 1737 8225 13083 17055 17055 1 HQLYIDETVNSNIPTNLR Unmodified 2126.0756 0.075631144 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.33 2.21 1 2 1 1 1 53.56 53.56 3 1.2271E-44 15293 TMT1-4 204.81 186.03 635.14 743.32 645.48 613.45 671.04 808.07 599 749 666 608 695 776 9 9 9 9 9 9 629380 8302 438 8226 13084;13085;13086;13087;13088;13089 17056;17057;17058;17059;17060;17061;17062;17063;17064;17065 17057 10 HQNVQLPR Unmodified 990.53591 0.5359118 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 27.756 27.756 3 0.00020764 5229 TMT1-4 145.34 126.1 254.88 288.03 200.15 190.98 253.3 348.82 240 290 210 190 262 334 3 3 3 3 3 3 24658 8303 901 8227 13090;13091 17066;17067;17068 17066 3 HQPADLLEFALQHFTR Unmodified 1921.9799 0.97988027 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 9 0 1 73.303 73.303 4 0.00010025 20930 TMT1-8 67.299 41.769 46.615 50.153 57.905 36.061 49.358 67.882 44 51 58 37 51 65 2 2 2 2 2 2 5886.2 8304 974 8228 13092 17069;17070 17069 2 HQPTAIIAK Unmodified 977.56581 0.56581494 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 7.67 0.943 2 1 36.085 36.085 2;3 0.0028214 6785 TMT1-8 77.677 40.119 413.13 607.51 563.17 458.9 548.56 682.58 391 606 575 460 567 655 3 3 3 3 3 3 117740 8305 937 8229 13093;13094;13095 17071;17072;17073 17073 3 HQRMHTGEK Oxidation (M) 1138.5302 0.53017449 2060 Q6ZN19-3;Q6ZN19;Q6ZS27-3;Q6ZS27;Q6ZS27-2 ZNF841;ZNF662 Zinc finger protein 841;Zinc finger protein 662 yes no 0 0 1 0 1 8 0 1 21.782 21.782 4 0.039962 3557 TMT1-7 54.416 35.636 36.092 36.354 34.714 42.083 35.119 48.034 34 37 36 41 37 46 1 1 1 1 1 1 12114 8306 2060 8230 13096 17074 17074 278 1 HQRMHTGEK Unmodified 1122.5353 0.53525987 2060 Q6ZN19-3;Q6ZN19;Q6ZS27-3;Q6ZS27;Q6ZS27-2 ZNF841;ZNF662 Zinc finger protein 841;Zinc finger protein 662 yes no 0 0 0 0 1 8 0 2 23.243 23.243 4 0.0090678 3906 TMT1-7 70.256 5.0096 140.97 178.59 140.96 149.73 134.94 195.49 133 179 147 147 142 187 2 2 2 2 2 2 43625 8307 2060 8230 13097;13098 17075;17076 17076 2 HQSFVLVGETGSGK Unmodified 1444.731 0.73104237 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 7 0 1 44.36 44.36 3 2.2713E-05 11293 TMT1-6 76.391 69.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8308 153 8231 13099 17077 17077 1 HQSIEEAK Unmodified 940.46141 0.46140945 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 27.375 27.375 3 0.030396 5336 TMT1-3 55.064 27.76 68.907 95.432 59.909 97.593 83.929 75.423 65 95 65 94 87 73 2 2 2 2 2 2 4899.6 8309 1708 8232 13100;13101 17078;17079 17079 2 HQTVPQNTGGK Unmodified 1165.584 0.5839842 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6.5 1.5 1 1 25.103 25.103 3 0.00012607 4146 TMT1-7 102.4 76.927 44.521 48.288 50.627 32.179 46.411 37.052 42 49 51 33 47 36 2 2 2 2 2 2 4266 8310 451 8233 13102;13103 17080;17081 17081 2 HRDYETATLSDIK Unmodified 1547.758 0.7579854 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 4 0 1 39.958 39.958 3 0.00016844 10349 TMT1-3 92.935 56.165 107.99 129.84 135.45 124.15 118.02 143.74 102 131 138 123 123 138 1 1 1 1 1 1 17899 8311 195 8234 13104 17082 17082 1 HRHPDEAAFFDTASTGK Unmodified 1885.8707 0.87072375 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 5 0 2 38.045 38.045 4;5 4.774E-14 9230 TMT1-4 125.41 106.35 662.49 996.94 702.87 753.56 594.71 1076.7 626 990 739 738 637 1026 3 3 3 3 3 3 59424 8312 437 8235 13105;13106 17083;17084;17085 17083 3 HRHPECYVCTDCGTNLK Unmodified 2145.9143 0.9142616 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 1 5 0 1 33.462 33.462 5 0.0018081 7515 TMT1-4 58.814 49.156 123.13 112.97 128.81 124.23 134.78 112.35 116 116 131 123 138 109 1 1 1 1 1 1 18870 8313 41 8236 13107 17086 17086 1 HRPDLIDFDK Unmodified 1254.6357 0.63568542 1546;651 Q01082;Q01082-3;Q01082-2;P11277-2;P11277;P11277-3 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic no no 0 0 0 0 1 5 0 1 44.311 44.311 4 0.0037685 11710 TMT1-4 77.744 42.857 169.59 193.99 186.27 128.8 174.68 254.05 160 196 189 131 181 243 1 1 1 1 1 1 18160 8314 1546;651 8237 13108 17087 17087 1 HRPELIDYGK Unmodified 1226.6408 0.6407708 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4.8 2.04 1 2 1 1 37.165 37.165 3;4 0.00016076 8762 TMT1-4 116.55 71.908 7338.6 8719.3 8788.9 6593.1 7821.5 9682.1 6929 8798 8912 6646 8085 9292 7 7 7 7 7 7 539910 8315 672 8238 13109;13110;13111;13112;13113 17088;17089;17090;17091;17092;17093;17094 17091 7 HRPELIEYDK Unmodified 1298.6619 0.66190017 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 1 4 0 1 36.789 36.789 4 0.011194 9110 TMT1-3 64.73 41.851 642.57 808.43 603.21 575.19 572.87 793.81 606 810 629 569 599 760 2 2 2 2 2 2 48079 8316 195 8239 13114 17095;17096 17096 2 HRPQVAIICGSGLGGLTDK Unmodified 1978.0418 0.041828595 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 1 8 0 1 48.996 48.996 4 3.5936E-13 13134 TMT1-7 108.75 66.478 648.58 609.09 664.53 559.49 748.67 843.16 611 624 674 561 768 811 2 2 2 2 2 2 60988 8317 394 8240 13115 17097;17098 17097 2 HSAPVNAVDNSGK Unmodified 1294.6266 0.6265773 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-4 ANKRD44 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B yes no 0 0 0 0 0 5 0 1 30.005 30.005 3 0.0026078 6155 TMT1-4 66.533 46.151 54.171 49.764 50.675 28.012 35.342 29.905 51 51 51 29 36 29 1 1 1 1 1 1 3825.9 8318 2192 8241 13116 17099 17099 1 HSASPMGVQDFDIVR Unmodified 1657.7882 0.78823967 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7 0 1 50.664 50.664 3 0.0010531 13785 TMT1-6 53.395 29.545 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8319 876 8242 13117 17100 17100 1 HSAVQTK Unmodified 769.40825 0.40825167 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 6 0 1 21.73 21.73 3 0.011954 3746 TMT1-5 77.741 31.077 10.661 5.5503 6.8703 7.1147 6.7455 7.2695 10 6 7 7 7 7 1 1 1 1 1 1 467.59 8320 1592 8243 13118 17101 17101 1 HSDGNLCVK Unmodified 1028.4709 0.47092828 1182 P49458;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 0 5 0 1 31.177 31.177 3 0.0030878 6498 TMT1-4 80.787 59.886 168.82 263.06 258.52 186.94 225.01 264.34 160 262 262 189 232 254 2 2 2 2 2 2 30943 8321 1182 8244 13119 17102;17103 17102 2 HSEAATAQREEWK Unmodified 1541.7223 0.7222686 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 1 4 0 1 29.561 29.561 4 1.3241E-11 6217 TMT1-3 147.26 127.14 184.05 329.55 166.03 204.52 106.15 381.8 174 324 181 198 123 361 1 1 1 1 1 1 20371 8322 1748 8245 13120 17104 17104 1 HSEIQQLER Unmodified 1138.5731 0.57308516 1649 Q12846;Q12846-2 STX4 Syntaxin-4 yes no 0 0 0 0 0 2 0 1 30.684 30.684 3 0.017447 7240 TMT1-1 59.645 43.508 30.847 28.42 21.307 14.291 44.349 29.648 29 29 22 15 44 29 1 1 1 1 1 1 5217.3 8323 1649 8246 13121 17105 17105 1 HSETFTR Unmodified 876.40898 0.40897995 2933 Q9UNS2;Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 yes no 0 0 0 0 0 4 0 1 21.149 21.149 3 0.037497 3652 TMT1-3 54.776 41.503 5.2743 10.174 6.6194 7.1296 6.7448 7.2695 5 10 7 7 7 7 1 1 1 1 1 1 533.58 8324 2933 8247 13122 17106 17106 1 HSEVQQANLK Unmodified 1152.5887 0.58873523 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 5 0 1 30.118 30.118 3 2.4561E-06 6152 TMT1-4 119.22 85.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8325 1021 8248 13123 17107 17107 1 HSGIDFK Unmodified 802.39735 0.39735263 1700 Q13418;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 5.5 0.5 1 1 36.603 36.603 3 0.00065016 8858 TMT1-5 139.68 100.86 4758.4 6657.5 7215 4578.2 5983.6 7324.3 4506 6672 7248 4685 6162 7031 2 2 2 2 2 2 386410 8326 1700 8249 13124;13125 17108;17109 17109 2 HSGNITFDEIVNIAR Unmodified 1684.8533 0.85328277 951 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 0 6 0 1 60.114 60.114 3 7.4907E-11 18098 TMT1-5 124.39 101.24 168.68 209.63 145.93 114.61 184.92 218.58 159 210 152 116 189 210 2 2 2 2 2 2 43311 8327 951 8250 13126 17110;17111 17110 2 HSGPNSADSANDGFVR Unmodified 1629.7132 0.71316047 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 4 1 1 1 29.427 29.427 3 5.8959E-24 7094 TMT1-2 176.29 138.29 84.898 86.487 84.967 79.679 143.39 134.49 80 88 87 80 145 130 3 3 3 3 3 3 25115 8328 1271 8251 13127;13128 17112;17113;17114 17112 3 HSGQFTDEYLPEQR Unmodified 1705.7696 0.76961272 1749 Q14112-2;Q14112 NID2 Nidogen-2 yes no 0 0 0 0 0 3 0 1 41.62 41.62 3 2.1005E-07 11947 TMT1-2 107.69 65.119 99.795 84.031 108.17 94.714 84.061 75.419 94 87 109 94 87 73 1 1 1 1 1 1 9965 8329 1749 8252 13129 17115 17115 1 HSLASSEYPVR Unmodified 1244.6149 0.61494998 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 0 7 0 1 32.21 32.21 3 0.0062264 6528 TMT1-6 65.842 48.368 38.44 20.58 14.12 15.286 14.196 23.047 36 22 15 15 15 22 1 1 1 1 1 1 1501.4 8330 1242 8253 13130 17116 17116 1 HSLDASQGTATGPR Unmodified 1396.6695 0.66950474 62 O00330;O00330-3 PDHX Pyruvate dehydrogenase protein X component, mitochondrial yes no 0 0 0 0 0 4 0 1 26.245 26.245 3 3.976E-05 4901 TMT1-3 71.344 69.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8331 62 8254 13131 17117 17117 1 HSLEQKPTDAPPK Unmodified 1446.7467 0.74669243 468 P04233-2;P04233 CD74 HLA class II histocompatibility antigen gamma chain yes no 0 0 0 0 1 6 0 1 33.589 33.589 4 0.00044736 7679 TMT1-5 81.709 53.412 108.09 106.39 137.56 108.41 134.19 150.74 102 109 138 109 138 145 1 1 1 1 1 1 4844.1 8332 468 8255 13132 17118 17118 1 HSLLCNMIQK Unmodified 1242.6213 0.62129768 3089 yes yes 0 0 0 0 0 8 0 1 58.285 58.285 3 0.0044123 16844 TMT1-7 74.464 33.968 77.102 155.28 74.647 49.551 92.697 97.559 73 152 80 51 94 94 1 1 1 1 1 1 42437 + 8333 3089 8256 13133 17119 17119 1 HSLPDIQLLQK Unmodified 1290.7296 0.7295858 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 7 0 2 55.61 55.61 2;4 2.0643E-05 15820 TMT1-6 119.53 80.566 74.094 436.17 342.09 323.17 387.69 370.57 73 420 354 321 397 358 2 2 2 2 2 2 123300 8334 1684 8257 13134;13135 17120;17121 17121 2 HSLSGRPLK Unmodified 993.57196 0.57196295 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 9 0 1 28.059 28.059 4 0.037621 4522 TMT1-8 55.461 4.7581 35.019 39.666 31.854 29.085 37.952 196.13 33 40 33 29 44 185 1 1 1 1 1 1 6586.7 8335 1261 8258 13136 17122 17122 1 HSNLVQLLGVIVEEK Unmodified 1676.9461 0.94612052 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 7.67 0.471 1 2 76.542 76.542 3;4 2.3404E-06 24021 TMT1-7 102.08 83.027 138.03 241.29 221.26 157.59 218.24 257.07 131 239 225 160 224 247 3 3 3 3 3 3 30732 8336 1083 8259 13137;13138;13139 17123;17124;17125 17124 3 HSNVNLTIFTAR Unmodified 1371.7259 0.72589741 2136 Q9NRW3;Q8IUX4;Q96AK3 APOBEC3C;APOBEC3F;APOBEC3D DNA dC->dU-editing enzyme APOBEC-3C;DNA dC->dU-editing enzyme APOBEC-3F;DNA dC->dU-editing enzyme APOBEC-3D yes no 0 0 0 0 0 8 0 1 47.09 47.09 3 0.00063062 12452 TMT1-7 63.185 54.672 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8337 2136 8260 13140 17126 17126 1 HSPICHTTMAFLR Unmodified 1569.7544 0.75443712 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 9 0 1 40.307 40.307 3 1.0879E-23 8207 TMT1-8 181.44 147.89 54.151 45.392 57.675 46.796 60.492 64.366 51 47 58 47 62 62 1 1 1 1 1 1 14798 8338 565 8261 13141 17127 17127 1 HSQAVEELAEQLEQTK Unmodified 1838.901 0.90102082 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.57 1.29 1 2 2 2 60.059 60.059 3;4 3.853E-16 18163 TMT1-3 135.55 105.82 1417.9 1979.2 2038.8 1490.7 2150.7 1718.8 1342 1982 2062 1512 2178 1670 8 8 8 8 8 8 392920 8339 1019 8262 13142;13143;13144;13145;13146;13147;13148 17128;17129;17130;17131;17132;17133;17134;17135;17136 17132 9 HSQAVEELAEQLEQTKR Unmodified 1995.0021 0.0021318501 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5.2 0.748 1 2 2 54.102 54.102 4;5 9.8336E-36 15642 TMT1-4 185.99 165.05 5780 8525.6 7061.4 5540.1 6928.7 8611.7 5466 8490 7254 5573 7150 8264 10 10 10 10 10 10 883280 8340 1019 8263 13149;13150;13151;13152;13153 17137;17138;17139;17140;17141;17142;17143;17144;17145;17146 17139 10 HSQEELLQR Unmodified 1138.5731 0.57308516 2027 Q6P2E9-2;Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 0 2 0 1 29.564 29.564 3 0.008404 6757 TMT1-1 68.657 50.991 23.421 36.725 0 23.653 20.884 30.318 22 36 0 22 22 29 1 1 0 1 1 1 2844.4 8341 2027 8264 13154 17147 17147 1 HSQFIGYPITLFVEK Unmodified 1777.9403 0.94030686 545 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 0 8.25 0.433 3 1 70.616 70.616 3;4 1.9924E-19 19802 TMT1-8 140.22 112.57 439.71 454.79 554.01 478.7 396.32 794.59 415 464 559 475 426 756 4 4 4 4 4 4 69952 8342 545 8265 13155;13156;13157;13158 17148;17149;17150;17151;17152;17153 17152 6 HSQFLGYPITLYLEK Unmodified 1807.9509 0.95087155 1955 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 0 0 0 0 0 8.5 0.5 1 1 68.524 68.524 3 1.322E-07 20857 TMT1-7 105.63 0 503.49 618.17 515.65 553.93 702.16 803.98 475 621 536 547 722 773 4 4 4 4 4 4 76404 8343 1955 8266 13159;13160 17154;17155;17156;17157 17154 4 HSQPATPTPLQSR Unmodified 1418.7266 0.72662569 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6.33 1.25 1 1 1 28.569 28.569 3 8.0735E-07 5558 TMT1-4 115.79 100.13 115.96 87.441 93.529 77.001 84.326 91.402 109 91 95 77 87 88 4 4 4 4 4 4 13358 8344 2718 8267 13161;13162;13163 17158;17159;17160;17161 17158 4 HSQSMIEDAQLPLEQK Unmodified 1852.8989 0.89891233 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 4 0 1 51.875 51.875 3 1.6992E-05 15033 TMT1-3 86.455 63.581 61.145 86.612 109.62 63.07 76.611 121.47 58 87 109 65 80 116 1 1 1 1 1 1 13390 8345 1723 8268 13164 17162 17162 1 HSSIFDQLDVVSYEEVVR Unmodified 2121.0378 0.037848654 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 5 0 1 69.352 69.352 3 4.6341E-06 21574 TMT1-4 85.146 63.028 23.22 44.8 26.915 37.225 27.589 30.127 22 44 29 36 29 29 1 1 1 1 1 1 7588.9 8346 1534 8269 13165 17163 17163 1 HSSLAGCQIINYR Unmodified 1517.7409 0.74089555 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7.33 1.25 1 1 1 40.426 40.426 3 2.4648E-23 8256 TMT1-8 176.18 150.75 299.01 444.43 404.54 269.23 442.75 423.36 283 443 411 276 449 409 3 3 3 3 3 3 69980 8347 1540 8270 13166;13167;13168 17164;17165;17166 17166 3 HSSLIDIDSVPTYK Unmodified 1573.7988 0.79878758 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 7 1 1 1 55.157 55.157 3 2.7856E-05 15686 TMT1-7 91.441 68.908 294.06 339.98 243.92 202.67 306.73 300.39 277 342 254 204 312 290 3 3 3 3 3 3 51472 8348 2085 8271 13169;13170 17167;17168;17169 17169 3 HSTFHGEDK Unmodified 1056.4625 0.46247208 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 6 0 1 23.428 23.428 4 0.038091 3969 TMT1-5 44.82 23.357 15.625 52.635 34.418 29.125 27.705 37.585 15 51 36 29 29 36 1 1 1 1 1 1 1138.2 8349 1724 8272 13171 17170 17170 1 HSTIFENLANK Unmodified 1272.6463 0.64625011 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 7 0 1 48.681 48.681 3 0.004003 13026 TMT1-6 71.555 39.032 272.73 305.12 251.37 230.58 251.55 346.73 257 308 260 229 262 332 1 1 1 1 1 1 12072 8350 451 8273 13172 17171 17171 1 HSTSAVDLSTCFAQISHTAR Unmodified 2188.0331 0.033114402 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8 1 1 1 49.351 49.351 4 7.4057E-13 11525 TMT1-8 86.179 66.286 222.63 260.92 233.4 213.35 178.7 267.8 210 263 240 211 189 256 2 2 2 2 2 2 17038 8351 2066 8274 13173;13174 17172;17173 17173 2 HSVATAADLELK Unmodified 1253.6616 0.66156582 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 5 0 1 44.616 44.616 3 0.0055624 11877 TMT1-4 46.481 31.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8352 1994 8275 13175 17174 17174 1 HSVGVVIGR Unmodified 922.53485 0.53484916 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 32.3 32.3 3 0.00029212 6565 TMT1-6 118.5 81.938 106.81 168.49 119.31 94.494 118.58 167.18 101 167 124 95 123 160 2 2 2 2 2 2 12542 8353 2334 8276 13176;13177 17175;17176 17176 2 HSVVAGGGGGEGR Unmodified 1138.5479 0.54793304 2040 Q6PKG0-3;Q6PKG0 LARP1 La-related protein 1 yes no 0 0 0 0 0 3 0 1 19.901 19.901 3 0.0094421 3481 TMT1-2 56.569 38.584 11.748 6.5941 3.6915 4.0768 3.9967 0 11 7 4 4 4 0 1 1 1 1 1 0 434.89 8354 2040 8277 13178 17177 17177 1 HSYLHLAENYLIR Unmodified 1627.8471 0.84707518 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 7 0 2 51.503 51.503 3;4 2.0683E-11 14107 TMT1-6 140.63 108.37 130.02 173.33 181.55 96.995 195.19 156.46 123 174 182 102 196 152 2 2 2 2 2 2 27136 8355 1081 8278 13179;13180 17178;17179 17178 2 HSYMAEGITRR Phospho (STY) 1399.6068 0.60678363 907 P27153 yes yes 0 0 0 1 1 9 0 1 91.292 91.292 2 0.03328 27918 TMT1-8 40.002 14.265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8356 907 8279 13181 17180 17180 4 1 HTAAPTDPADGPV Unmodified 1247.5782 0.57823012 1589 Q04941 PLP2 Proteolipid protein 2 yes yes 0 0 0 0 0 2.33 0.471 2 1 36.305 36.305 2 1.7571E-12 9644 TMT1-1 156.62 137.64 54.074 72.16 47.935 59.369 62.102 92.036 51 72 51 58 65 88 2 2 2 2 2 2 77354 8357 1589 8280 13182;13183;13184 17181;17182;17183 17181 3 HTAFIGDRN Unmodified 1029.4992 0.49919194 2669 Q9HAB8;Q9HAB8-2 PPCS Phosphopantothenate--cysteine ligase yes no 0 0 0 0 1 5 0 1 29.287 29.287 3 0.027669 5778 TMT1-4 59.931 43.777 30.671 66.786 18.296 30.215 20.839 22.857 29 65 22 29 22 22 1 1 1 1 1 1 3149.6 8358 2669 8281 13185 17184 17184 1 HTAMVSWGGVSIPNSPFR Oxidation (M) 1957.9469 0.94686558 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 9 0 1 58.573 58.573 4 5.8312E-05 15149 TMT1-8 63.145 44.733 68.949 94.468 53.778 66.51 70.7 75.801 65 94 58 65 73 73 1 1 1 1 1 1 6459.2 8359 831 8282 13186 17185 17185 159 1 HTAMVSWGGVSIPNSPFR Unmodified 1941.952 0.95195096 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 9 0 1 62.207 62.207 3 1.0215E-26 16638 TMT1-8 137.81 116.76 299.74 328.8 380.66 305.11 354.03 461.07 283 334 384 306 367 442 2 2 2 2 2 2 177650 8360 831 8282 13187 17186;17187 17187 2 HTDEEFLK Unmodified 1017.4767 0.47672516 2610 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 0 3 0 1 39.76 39.76 3 0.011815 11203 TMT1-2 71.501 55.61 61.133 110.32 91.54 72.738 84.815 82.86 58 109 94 73 87 80 1 1 1 1 1 1 6676.4 8361 2610 8283 13188 17188 17188 1 HTDNTVQWLR Unmodified 1268.6262 0.62618337 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 6 0 1 39.708 39.708 3 0.0010491 10034 TMT1-5 90.913 54.466 146.57 158.38 118.29 102.19 119.58 127.71 138 160 123 102 123 123 1 1 1 1 1 1 32772 8362 1723 8284 13189 17189 17189 1 HTDNVIQWLNAMDEIGLPK Unmodified 2193.0888 0.088838367 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7 0 1 81.616 81.616 4 0.00043705 25919 TMT1-6 57.745 54.863 77.447 93.642 68.918 66.839 63.355 76.01 73 94 72 66 66 73 2 2 2 2 2 2 12320 8363 1139 8285 13190 17190;17191 17190 2 HTDPVPDPR Unmodified 1032.4989 0.49885759 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 2 0 1 27.619 27.619 3 0.005831 6088 TMT1-1 73.985 48.426 84.834 108.97 76.698 65.019 77.328 97.997 80 109 80 65 80 94 1 1 1 1 1 1 11211 8364 748 8286 13191 17192 17192 1 HTDPVQLQAAGR Unmodified 1291.6633 0.66329715 300 O75791;O75791-2 GRAP2 GRB2-related adapter protein 2 yes no 0 0 0 0 0 4 0 1 31.783 31.783 3 0.0012361 7070 TMT1-3 77.124 46.252 69.169 56.226 49.159 51.638 62.494 90.959 65 58 51 51 65 87 1 1 1 1 1 1 12748 8365 300 8287 13192 17193 17193 1 HTEAIPDPR Unmodified 1034.5145 0.51450765 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 2.5 0.5 1 1 29.529 29.529 3 0.0023904 7206 TMT1-2 85.731 45.729 582.41 656.91 744.2 487.18 853.73 774.07 550 666 747 501 863 749 5 5 5 5 5 5 72385 8366 2344 8288 13193;13194 17194;17195;17196;17197;17198 17198 5 HTENTFSR Unmodified 990.45191 0.45190739 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 4 0 1 21.342 21.342 3 0.0057661 3663 TMT1-3 81.972 41.904 6.3765 3.7057 7.1958 2.7765 3.9139 4.1523 6 4 7 3 4 4 1 1 1 1 1 1 538.59 8367 1597 8289 13195 17199 17199 1 HTGAVLK Unmodified 724.42317 0.42317345 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 7 0 2 29.347 29.347 2;3 0.0243 5424 TMT1-6 94.262 71.242 27.339 62.375 41.015 60.907 60.393 48.379 26 61 44 59 62 47 2 2 2 2 2 2 14490 8368 478 8290 13196;13197 17200;17201 17200 2 HTGPGILSMANAGPNTNGSQFFICTAK Unmodified 2790.3218 0.3217682 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 0 8 0 2 65.335 65.335 3;4 4.1836E-17 19613 TMT1-7 102.95 80.413 129.84 204.11 186.93 104.82 168.82 243.56 123 203 189 109 174 233 3 3 3 3 3 3 47175 8369 1461 8291 13198;13199 17202;17203;17204 17202 3 HTGPNSPDTANDGFVR Unmodified 1683.7601 0.76011066 983;1325 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 0 4 0.816 1 1 1 32.316 32.316 3 2.8026E-18 8291 TMT1-2 146.78 119.1 184.37 262.44 169.53 216.3 224.19 279.29 174 261 181 211 233 268 4 4 4 4 4 4 88463 8370 983;1325 8292 13200;13201;13202 17205;17206;17207;17208 17205 4 HTGYVIELQHVVK Unmodified 1521.8304 0.83036248 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 7 0 1 46.479 46.479 4 0.00030056 12134 TMT1-6 81.494 59.936 246.93 248.29 126.93 140.23 161.41 199 232 251 138 138 167 191 1 1 1 1 1 1 17643 8371 1146 8293 13203 17209 17209 1 HTIPEEETHR Unmodified 1247.5895 0.58946351 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 2.5 0.5 1 1 21.735 21.735 4 0.0016111 3970 TMT1-1 83.456 60.102 77.301 94.315 92.897 86.312 114.28 120.39 73 95 95 86 117 116 3 3 3 3 3 3 6668.1 8372 2066 8294 13204;13205 17210;17211;17212 17211 3 HTLADNFNPVSEER Unmodified 1627.759 0.75904803 814 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 0 3.5 0.5 1 1 44.239 44.239 3 0.00021939 11957 TMT1-3 78.888 71.517 176.49 231.71 257.08 236.48 210.81 337.24 167 233 261 234 223 322 1 1 1 1 1 1 58918 8373 814 8295 13206;13207 17213;17214 17214 2 HTLAYDK Unmodified 846.42357 0.42356738 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 5 0 1 32.389 32.389 3 0.012006 7006 TMT1-4 77.674 29.17 84.498 154.45 94.636 135.48 109.66 158.9 80 152 102 131 116 152 1 1 1 1 1 1 5519.2 8374 2028 8296 13208 17215 17215 1 HTLDGAACLLNSNK Unmodified 1512.7355 0.73547582 2988 Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3 MOB4 MOB-like protein phocein yes no 0 0 0 0 0 7 0 1 49.039 49.039 3 2.1609E-05 13164 TMT1-6 92.747 71.794 84.796 108.87 83.248 88.144 105.57 128.11 80 109 87 87 109 123 1 1 1 1 1 1 15291 8375 2988 8297 13209 17216 17216 1 HTLNQIDEVK Unmodified 1195.6197 0.619701 445 P02765 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes yes 0 0 0 0 0 4 0 1 39.432 39.432 3 0.0023087 10108 TMT1-3 81.525 52.363 199.97 259.96 254.94 243.79 119.16 437.92 189 261 261 239 139 414 1 1 1 1 1 1 36167 8376 445 8298 13210 17217 17217 1 HTLSYVDVGTGK Unmodified 1275.6459 0.64591575 970 P31040;P31040-2;P31040-3 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 6 0 1 43.271 43.271 3 0.00019139 11464 TMT1-5 92.247 66.905 108.18 137.92 96.604 110.88 133.09 179.55 102 138 102 109 138 172 1 1 1 1 1 1 8449.7 8377 970 8299 13211 17218 17218 1 HTLTQIK Unmodified 839.4865 0.48650199 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 7 0 1 34.514 34.514 3 0.0009384 7355 TMT1-6 135.87 54.081 122.65 174.21 158.68 75.538 129.95 105.02 116 174 160 80 131 102 1 1 1 1 1 1 24553 8378 1068 8300 13212 17219 17219 1 HTLVEADIGIQAER Unmodified 1550.8053 0.80526994 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3.5 0.5 1 1 46.031 46.031 3 0.00077436 12602 TMT1-3 73.802 54.727 200.23 229.38 237.29 146.73 279.7 278.77 189 232 239 152 283 269 2 2 2 2 2 2 25010 8379 1546 8301 13213;13214 17220;17221 17221 2 HTNYTMEHIR Oxidation (M) 1316.5932 0.59316868 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;O43707-3;P35609-2;P35609 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 1 0 0 3.75 0.433 1 3 24.635 24.635 3;4 0.0012129 4209 TMT1-3 90.149 67.587 193.32 204.59 156.84 120.13 147.64 200.46 182 207 161 121 153 192 6 6 5 6 6 6 14030 8380 672;195;1022 8302 13215;13216;13217;13218 17222;17223;17224;17225;17226;17227 17223 21 6 HTNYTMEHIR Unmodified 1300.5983 0.59825406 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;O43707-3;P35609-2;P35609 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 4.75 1.48 1 1 1 1 26.88 26.88 3;4 5.708E-05 5195 TMT1-3 120.63 105 446.19 710.44 510.5 405.89 453.99 613.85 422 704 530 407 472 588 7 7 7 7 7 7 42212 8381 672;195;1022 8302 13219;13220;13221;13222 17228;17229;17230;17231;17232;17233;17234;17235 17230 8 HTQVCINGQCAGSICEK Unmodified 1960.8553 0.85534973 101 O14672;O14672-2 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes no 0 0 0 0 0 5 0 1 41.448 41.448 3 0.00014626 10642 TMT1-4 75.682 59.559 61.619 64.185 49.03 44.688 25.634 77.087 58 65 51 44 29 73 1 1 1 1 1 1 10348 8382 101 8303 13223 17236 17236 1 HTQWGIDILEK Unmodified 1338.6932 0.6932003 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 6 0 1 58.875 58.875 3 0.0001186 17651 TMT1-5 75.89 44.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8383 2449 8304 13224 17237 17237 1 HTQWGLDLLDR Unmodified 1352.6837 0.68369824 1867 Q15642-4;Q15642-2;Q15642-3;Q15642;Q15642-5 TRIP10 Cdc42-interacting protein 4 yes no 0 0 0 0 0 6 0 1 57.319 57.319 3 0.0098294 17022 TMT1-5 62.14 34.398 46.64 65.333 40.79 59.775 63.183 60.025 44 65 44 58 65 58 1 1 1 1 1 1 7394 8384 1867 8305 13225 17238 17238 1 HTSALCNSCR Unmodified 1204.5077 0.50772449 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 2.58 1 1 1 1 1 1 20.519 20.519 3 1.0463E-14 3559 TMT1-4 181.53 154.4 96.521 109.09 96.082 94.932 110.78 119.49 91 110 99 94 114 115 14 13 13 14 14 13 46221 8385 3010 8306 13226;13227;13228;13229;13230;13231 17239;17240;17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252 17240 14 HTSISESSR Unmodified 1002.473 0.47303677 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 3 0 1 18.603 18.603 3 0.034378 3260 TMT1-2 50.108 19.544 2.0905 5.0952 5.0137 1.7972 4.786 10.523 2 5 5 2 5 10 1 1 1 1 1 1 445.44 8386 1138 8307 13232 17253 17253 1 HTSVQTTSSGSGPFTDVR Unmodified 1862.8759 0.8758687 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16;P02751-2 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 5 0 1 35.873 35.873 3 4.1526E-11 8406 TMT1-4 115.78 95.127 23.446 14.129 14.975 6.479 14.858 15.566 22 15 15 7 15 15 1 1 1 1 1 1 6839.4 8387 442 8308 13233 17254 17254 1 HTVDDGLDIR Unmodified 1139.5571 0.55710075 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 2 0 1 37.722 37.722 3 0.0010839 10016 TMT1-1 90.653 43.586 15.667 52.753 27.165 21.752 35.887 22.428 15 51 29 22 36 22 1 1 1 1 1 1 20815 8388 2116 8309 13234 17255 17255 1 HTVDDGLDIRK Unmodified 1267.6521 0.65206377 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 1 4 0 1 37.59 37.59 4 0.0039885 9344 TMT1-3 69.786 49.456 115.76 152.72 71.796 112.63 118.55 143.73 109 152 80 109 123 138 1 1 1 1 1 1 14440 8389 2116 8310 13235 17256 17256 1 HTVDIEEK Unmodified 969.47673 0.47672516 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 2.5 0.5 1 1 34.616 34.616 3 0.0010196 9157 TMT1-2 119.21 75.094 284.89 330.32 349.98 313.21 369.34 430.78 269 334 356 312 381 414 3 3 3 3 3 3 35002 8390 2486 8311 13236;13237 17257;17258;17259 17259 3 HTVYAALQDFSQVTLR Unmodified 1847.953 0.95299681 2079 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 0 0 0 0 0 8 0 1 65.269 65.269 3 6.8647E-07 19631 TMT1-7 99.451 81.038 61.562 56.472 65.112 34.11 72.189 75.758 58 58 65 36 73 73 1 1 1 1 1 1 10329 8391 2079 8312 13238 17260 17260 1 HVAEDLGK Unmodified 867.44503 0.4450311 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 3.5 0.5 1 1 34.819 34.819 3 0.0050195 8148 TMT1-3 84.743 59.006 306.56 419.19 419.85 395.71 410.35 436.01 290 420 429 392 424 420 3 3 3 3 3 3 65234 8392 1076 8313 13239;13240 17261;17262;17263 17262 3 HVAGLWAGLR Unmodified 1078.6036 0.60359743 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 9 0 1 48.35 48.35 3 0.00016734 11172 TMT1-8 106.6 70.175 61.213 102.99 84.392 73.046 91.067 113.6 58 102 87 73 94 109 1 1 1 1 1 1 19073 8393 3051 8314 13241 17264 17264 1 HVALSVGGR Unmodified 894.50355 0.50354903 2272 Q8WVJ2 NUDCD2 NudC domain-containing protein 2 yes yes 0 0 0 0 0 7 0 1 32.189 32.189 3 0.0002164 6485 TMT1-6 124.08 86.986 61.588 80.29 40.499 44.467 64.4 45.066 58 80 44 44 65 44 1 1 1 1 1 1 5868.4 8394 2272 8315 13242 17265 17265 1 HVEAVYIDIADR Unmodified 1399.7096 0.70957864 1536 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 0 0 0 3 0 1 50.127 50.127 3 8.7382E-05 15311 TMT1-2 99.531 89.572 54.11 73.339 40.948 44.598 56.002 76.22 51 73 44 44 58 73 1 1 1 1 1 1 10621 8395 1536 8316 13243 17266 17266 1 HVEDGNVTVQHAALSALR Unmodified 1915.9864 0.98642221 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 5 0 1 42.222 42.222 4 0.00095525 10912 TMT1-4 57.708 41.351 68.811 94.084 77.278 73.849 70.912 59.805 65 94 80 73 73 58 1 1 1 1 1 1 8971.1 8396 1264 8317 13244 17267 17267 1 HVFAIFNTEQR Unmodified 1360.6888 0.68878362 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 8.5 0.5 1 1 50.397 50.397 3 2.8215E-05 11913 TMT1-8 103.34 75.6 161.59 240.63 229.47 141.48 177.13 196.42 153 240 232 145 182 189 2 2 2 2 2 2 26504 8397 1226 8318 13245;13246 17268;17269 17269 2 HVFGESDELIGQK Unmodified 1457.7151 0.71505795 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 4.83 0.687 2 3 1 49.62 49.62 2;3;4 5.5425E-11 14138 TMT1-3 134.98 105.43 1399.7 2039.6 1426.5 1334.7 1574.5 1953.8 1322 2028 1493 1326 1628 1875 8 8 8 8 8 8 258430 8398 1352 8319 13247;13248;13249;13250;13251;13252 17270;17271;17272;17273;17274;17275;17276;17277 17271 8 HVFGQAVK Unmodified 884.48684 0.48683634 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 6 3.56 1 1 1 36.611 36.611 3 0.0028441 6953 TMT1-8 79.469 39.926 2468.1 3147.2 2717.4 2708.6 3064.2 3490.1 2330 3157 2809 2679 3163 3356 4 4 4 4 4 4 357740 8399 2913 8320 13253;13254;13255 17278;17279;17280;17281 17281 4 HVFGQPAK Unmodified 882.47119 0.47118627 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 6 2.92 1 1 2 33.801 33.801 2;3 0.0015054 7173 TMT1-7 102.72 59.473 2967.8 5000.1 3348.6 3304.9 4168 4848.6 2808 4940 3522 3278 4289 4660 6 6 6 6 6 6 626040 8400 971 8321 13256;13257;13258;13259 17282;17283;17284;17285;17286;17287 17286 6 HVFNMLK Unmodified 887.46874 0.46874343 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 9 0 1 46.755 46.755 3 0.02532 10479 TMT1-8 55.717 32.16 122.65 238.98 103.14 166.45 121.15 239.59 116 234 116 160 131 228 1 1 1 1 1 1 17034 8401 482 8322 13260 17288 17288 1 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR Unmodified 3719.8061 0.80608116 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 1 5.5 0.5 1 1 67.451 67.451 5 4.9476E-08 20876 TMT1-4 63.796 59.326 231.17 235.41 260.96 138.08 257.87 255.94 218 240 261 145 261 247 2 2 2 2 2 2 105130 8402 392 8323 13261;13262 17289;17290 17289 2 HVIDFFK Unmodified 904.48069 0.48068833 2747 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 0 8 0 1 54.784 54.784 3 0.003748 15487 TMT1-7 98.133 63.033 115.07 231.76 120.3 156.22 145.84 173.86 109 227 131 152 152 167 1 1 1 1 1 1 11045 8403 2747 8324 13263 17291 17291 1 HVIECAK Unmodified 855.42727 0.42727255 1110 P43246-2;P43246 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 0 5 0 1 30.417 30.417 3 0.007773 6253 TMT1-4 50.966 27.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8404 1110 8325 13264 17292 17292 1 HVIPMNPNTNDLFNAVGDGIVLCK Unmodified 2637.3043 0.30432723 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 72.902 72.902 4;5 3.732E-07 22542 TMT1-6 76.186 63.883 138.38 243.35 159.96 121.99 154.99 197.05 131 240 167 123 160 189 2 2 2 2 2 2 45290 8405 690 8326 13265;13266 17293;17294 17293 2 HVISYSLSPFEQR Unmodified 1561.7889 0.7888916 114 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 0 0 8 1 1 1 51.706 51.706 3 0.00025703 12387 TMT1-8 77.204 56.875 130.3 174.1 134.43 84.865 117.7 205.58 123 174 138 87 123 196 1 1 1 1 1 1 13904 8406 114 8327 13267;13268 17295;17296 17296 2 HVLDTLIQLAK Unmodified 1249.7394 0.73942221 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 1 70.689 70.689 3 1.2194E-06 19944 TMT1-8 111.06 76.804 37.758 88.837 70.883 57.979 63.265 60.023 36 87 73 58 65 58 1 1 1 1 1 1 3491.2 8407 2100 8328 13269 17297 17297 1 HVLEGHDR Unmodified 961.47298 0.47297719 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 3 0 1 19.72 19.72 3 0.025957 3416 TMT1-2 58.433 31.831 0 15.861 5.9258 15.637 21.509 22.838 0 15 7 15 22 22 0 1 1 1 1 1 1419.2 8408 1287 8329 13270 17298 17298 1 HVLFPLK Unmodified 852.52216 0.52215921 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 9 0 1 51.089 51.089 3 0.0088585 12211 TMT1-8 77.748 33.138 250.57 361.86 319.65 251.21 216.93 322.14 237 361 327 251 229 308 1 1 1 1 1 1 21419 8409 1297 8330 13271 17299 17299 1 HVLTGSADNSCR Unmodified 1315.5939 0.59389696 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 6.5 1.5 1 1 25.24 25.24 3 0.00082189 4314 TMT1-4 78.903 56.91 30.921 24.309 12.324 27.145 28.603 14.108 29 25 14 26 29 14 2 2 2 2 2 2 2611 8410 1695 8331 13272;13273 17300;17301 17300 2 HVLTLTDQVTR Unmodified 1281.7041 0.70409934 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 6.17 2.54 1 2 1 1 1 41.715 41.715 2;3 2.4587E-17 10865 TMT1-5 184.36 156.19 1817.3 1967.5 1822.8 1621.8 1845.5 2175.3 1713 1993 1869 1615 1907 2090 7 7 7 7 7 7 1336400 8411 484 8332 13274;13275;13276;13277;13278;13279 17302;17303;17304;17305;17306;17307;17308 17305 7 HVLVILTDMSSYAEALR Unmodified 1917.003 0.002983473 828 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 0 9 0 1 76.899 76.899 3 1.0772E-07 22353 TMT1-8 82.464 64.77 23.328 21.356 28.673 29.315 35.795 14.969 22 22 29 29 36 15 1 1 1 1 1 1 5611.4 8412 828 8333 13280 17309 17309 1 HVLVTLGEK Unmodified 994.58113 0.58113065 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 0 6.86 2.47 1 2 3 1 45.319 45.319 2;3 2.9846E-05 11593 TMT1-6 148.14 109.36 11953 16480 13775 10274 13997 16719 11294 16463 14124 10392 14382 16059 11 11 11 11 11 11 2976100 8413 1356 8334 13281;13282;13283;13284;13285;13286;13287 17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320 17312 11 HVPVVYVDYPGPASLTQIYGTFNR Unmodified 2692.3649 0.36493687 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 72.963 72.963 4 0.030941 22646 TMT1-7 30.585 23.786 46.838 43.22 26.182 53.137 55.609 76.231 44 44 29 51 58 73 1 1 1 1 1 1 6956.5 8414 1763 8336 13288 17321 17321 1 HVQGILR Unmodified 821.48717 0.48717069 18 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 0 7 0 1 31.311 31.311 3 0.0014271 6138 TMT1-6 128.82 54.299 99.826 115.42 76.24 64.909 84.625 98.855 94 116 80 65 87 95 2 2 2 2 2 2 15919 8415 18 8337 13289 17322;17323 17322 2 HVQLLGR Unmodified 821.48717 0.48717069 2079;2399 Q7L576;Q7L576-2;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7 0 1 34.568 34.568 3 0.0014216 7428 TMT1-6 129.16 43.047 153.86 133.51 176.49 91.487 97.276 151.79 145 138 175 95 102 145 2 2 2 2 2 2 10610 8416 2079;2399 8338 13290 17324;17325 17324 2 HVQLVLGQLIDENYLDR Unmodified 2024.0691 0.069089203 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 6 0 1 70.012 70.012 3 5.5143E-06 22031 TMT1-5 88.319 72.727 30.774 44.407 19.983 22.476 20.132 53.792 29 44 22 22 22 51 1 1 1 1 1 1 8116.9 8417 327 8339 13291 17326 17326 1 HVSDDMK Unmodified 830.35925 0.35925256 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 6 0 1 29.443 29.443 3 0.019701 6027 TMT1-5 67.903 56.055 76.461 216.1 130.74 117.21 95.031 182.77 73 210 138 116 102 174 1 1 1 1 1 1 8022.7 8418 1555;1556 8340 13292 17327 17327 1 HVSIQEAESYAESVGAK Unmodified 1803.8639 0.86390703 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 0 5 0 1 57.938 57.938 3 8.9353E-08 17105 TMT1-4 76.713 53.576 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8419 2905 8341 13293 17328 17328 1 HVSLPSFNQLFGLSDPVNR Unmodified 2126.0909 0.090887278 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 9 0 1 74.082 74.082 3 4.8058E-10 21327 TMT1-8 88.283 78.534 34.605 81.685 65.925 82.116 74.17 75.702 33 80 69 80 77 73 2 2 2 2 2 2 11062 8420 1187 8342 13294 17329;17330 17330 2 HVSPAGAAVGIPLSEDEAK Unmodified 1846.9425 0.94249171 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 5 0 1 49.686 49.686 3 1.3723E-06 13889 TMT1-4 80.975 58.434 46.533 57.48 65.457 26.712 57.63 52.721 44 58 65 29 58 51 1 1 1 1 1 1 13458 8421 981 8343 13295 17331 17331 1 HVSSLLAK Unmodified 853.50215 0.50215205 1964 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 0 0 9 0 1 40.655 40.655 3 0.043603 8324 TMT1-8 47.082 24.062 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8422 1964 8344 13296 17332 17332 1 HVTFNQVK Unmodified 971.51886 0.51886475 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 9 0 1 37.335 37.335 3 0.0033035 7147 TMT1-8 76.774 45.352 53.737 94.967 85.291 64.512 77.058 106.53 51 94 87 65 80 102 1 1 1 1 1 1 4446.9 8423 860 8345 13297 17333 17333 1 HVVFGHVK Unmodified 921.51847 0.51847082 958 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 33.887 33.887 3 0.00046254 6050 TMT1-8 132.29 93.263 184.17 256.47 208.96 213.56 244.8 322.41 174 256 217 211 254 309 2 2 2 2 2 2 18180 8424 958 8346 13298;13299 17334;17335;17336 17335 3 HVVFGQVIK Unmodified 1025.6022 0.60220045 1626 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 0 9 0 1 46.957 46.957 3 0.00051065 10562 TMT1-8 106.04 79.528 99.107 152.27 165.98 113.98 154.84 211.98 94 152 167 116 160 203 1 1 1 1 1 1 8518.5 8425 1626 8347 13300 17337 17337 1 HVVFIAQR Unmodified 968.55558 0.55558461 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 8.5 0.5 1 1 36.473 36.473 3 0.00055736 8207 TMT1-7 134.44 122.72 61.711 25.588 66.229 50.604 63.348 67.482 58 29 65 51 65 65 1 1 1 1 1 1 11558 8426 1412 8348 13301;13302 17338;17339 17338 2 HVVFYPTLK Unmodified 1102.6175 0.61751616 2562 Q9BWS9-3;Q9BWS9;Q9BWS9-2 CHID1 Chitinase domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 51.217 51.217 3 0.0032844 12271 TMT1-8 72.547 41.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8427 2562 8349 13303 17340 17340 1 HVVLGAIENK Unmodified 1078.6135 0.61349341 1082 P41227-2;P41227 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 0 0 0 7 0 1 44.619 44.619 3 0.00013419 11259 TMT1-6 109.66 74.84 114.88 244.17 142.37 154 193.85 179.95 109 239 152 152 198 174 1 1 1 1 1 1 32341 8428 1082 8350 13304 17341 17341 1 HVVPNEVVVQR Unmodified 1274.7095 0.70951906 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 5.17 2.27 1 1 1 1 1 1 36.021 36.021 3 2.1558E-07 8340 TMT1-4 141.89 112.08 1117.7 1308.5 1294.6 1232 1467 1749 1055 1321 1325 1223 1514 1680 8 8 8 8 8 8 690250 + 8429 506 8351 13305;13306;13307;13308;13309;13310 17342;17343;17344;17345;17346;17347;17348;17349 17345 8 HVVQSISTQQEK Unmodified 1382.7154 0.7153923 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 7 1 1 1 33.736 33.736 3 2.0202E-11 7709 TMT1-5 165.07 105.92 207.79 230.1 227.46 219.94 253.96 260.32 196 233 233 218 261 251 3 3 3 3 3 3 31510 8430 875 8352 13311;13312 17350;17351;17352 17350 3 HVVSVFK Unmodified 814.47012 0.47012364 332 O94915 FRYL Protein furry homolog-like no no 0 0 0 0 0 9 0 1 41.113 41.113 3 0.016417 8475 TMT1-8 60.961 46.444 53.943 80.43 62.963 50.943 55.71 76.228 51 80 65 51 58 73 1 1 1 1 1 1 2197.4 8431 332 8353 13313 17353 17353 1 HVYGELDVQIQR Unmodified 1455.747 0.74702678 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 4.75 0.829 2 1 1 45.723 45.723 2;3 3.0232E-19 12650 TMT1-3 186.81 155.99 2370.1 3173.6 2741.6 2528.6 2734.6 3095.4 2239 3176 2825 2510 2827 2977 12 12 12 12 12 12 277250 8432 393 8354 13314;13315;13316;13317 17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365 17357 12 HVYSEAAR Unmodified 931.45118 0.45117911 1550 Q01415-2;Q01415 GALK2 N-acetylgalactosamine kinase yes no 0 0 0 0 0 3 0 1 21.512 21.512 3 0.015893 3962 TMT1-2 66.073 50.491 54.461 26.828 21.263 14.732 21.038 37.776 51 29 22 15 22 36 1 1 1 1 1 1 1059.3 8433 1550 8355 13318 17366 17366 1 HWDHLTQVK Unmodified 1162.5883 0.5883413 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 7 0 1 39.139 39.139 4 0.0031611 9206 TMT1-6 77.732 61.508 84.442 146.74 110.67 125.89 104.09 120.69 80 145 116 123 109 116 1 1 1 1 1 1 6656.9 8434 952 8356 13319 17367 17367 1 HWELTAEGEEIAR Unmodified 1539.7318 0.73177065 2960 Q9Y285-2;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 0 3 0 1 48.065 48.065 3 6.109E-11 14512 TMT1-2 133.88 121.16 68.903 102.97 54.324 42.795 109.48 74.694 65 102 58 44 109 73 1 1 1 1 1 1 14524 8435 2960 8357 13320 17368 17368 1 HWGGNVLGPK Unmodified 1063.5563 0.55631289 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 9 0 1 43.685 43.685 3 0.014182 9397 TMT1-8 54.608 24.798 92.132 115.42 107.04 78.811 119.59 158.62 87 116 109 80 123 152 1 1 1 1 1 1 35005 8436 1438 8358 13321 17369 17369 1 HWLDSPWPGFFTLDGQPR Unmodified 2155.0276 0.02755874 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 77.693 77.693 3 2.3701E-14 22753 TMT1-8 112.34 89.353 23.246 28.684 36.175 21.066 43.781 37.127 22 29 36 22 44 36 1 1 1 1 1 1 9908.4 8437 1566 8359 13322 17370 17370 1 HWPFMVVNDAGRPK Unmodified 1652.8246 0.8245656 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 1 5 4 1 1 52.088 52.088 4 1.2772E-09 12221 TMT1-8 110.92 80.194 447.19 504.76 335.16 368.47 442.15 642.97 421 508 355 363 460 615 2 2 2 2 2 2 76500 8438 641 8360 13323;13324 17371;17372 17372 2 HWPFQVINDGDKPK Unmodified 1679.842 0.8419898 618 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 8 0 2 52.733 52.733 3 1.403E-11 14648 TMT1-7 107.74 86.797 53.849 80.169 78.935 57.085 85.278 90.309 51 80 80 58 87 87 1 1 1 1 1 1 23928 8439 618 8361 13325;13326 17373;17374 17374 2 HYAGDVTYSVEGFIDK Unmodified 1799.8366 0.83662965 20 B0I1T2;B0I1T2-4 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 5 0 2 60.921 60.921 3;4 1.5045E-06 18299 TMT1-4 93.424 62.463 130.71 273.62 162.57 193.66 171.56 258.41 124 268 174 189 181 247 2 2 2 2 2 2 15091 8440 20 8362 13327;13328 17375;17376 17376 2 HYAHTDCPGHADYVK Unmodified 1769.758 0.75800217 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 4 0 2 29.053 29.053 4;5 2.8934E-06 5981 TMT1-3 99.669 95.12 352.2 643.63 494.02 366.54 448.15 531.94 334 635 509 370 462 511 4 4 4 4 4 4 24222 8441 1180 8363 13329;13330 17377;17378;17379;17380 17377 4 HYDLDLVR Unmodified 1029.5243 0.52434406 1563 Q02083;Q02083-2;Q02083-3 NAAA N-acylethanolamine-hydrolyzing acid amidase;N-acylethanolamine-hydrolyzing acid amidase subunit alpha;N-acylethanolamine-hydrolyzing acid amidase subunit beta yes no 0 0 0 0 0 4 0 1 44.622 44.622 3 0.0020347 12151 TMT1-3 99.139 52.057 45.351 112.3 37.234 52.206 70.054 83.281 43 109 43 51 72 80 1 1 1 1 1 1 9758.2 8442 1563 8364 13331 17381 17381 1 HYEGSTVPEKK Unmodified 1273.6303 0.63026569 400 P00738-2;P00738 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes no 0 0 0 0 1 5 0 1 31.568 31.568 4 0.00080799 6679 TMT1-4 87.568 60.087 76.486 177.31 159.45 59.352 116.42 277.04 73 174 160 65 123 263 1 1 1 1 1 1 10940 8443 400 8365 13332 17382 17382 1 HYFQNTQGLIFVVDSNDRER Unmodified 2437.1775 0.17747045 1519;1520;774 P84085;P84077;P61204;P18085 ARF5;ARF1;ARF3;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4 no no 0 0 0 0 1 6.4 1.02 1 2 1 1 56.898 56.898 4 2.6517E-39 15684 TMT1-7 167.92 154.05 731.08 894.88 803.28 621.08 753.56 922.97 690 900 821 625 778 886 7 7 7 7 7 7 273370 8444 1520;1519;774 8366 13333;13334;13335;13336;13337 17383;17384;17385;17386;17387;17388;17389 17388 7 HYGGLTGLNK Unmodified 1058.5509 0.55089316 782 P18669;P15259;Q8N0Y7 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 40.819 40.819 3 4.0232E-05 9856 TMT1-7 128.86 102.34 1951.8 3140.7 2199.2 1923.9 2317 2691.6 1846 3110 2295 1920 2388 2587 4 4 4 4 4 4 218890 8445 782 8367 13338;13339;13340;13341 17390;17391;17392;17393;17394 17393 5 HYGPGWVSMANAGK Oxidation (M) 1489.6772 0.67723266 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 0 0 8 0 1 41.498 41.498 3 0.0019048 10231 TMT1-7 74.46 64.802 68.789 78.913 93.801 63.428 107.76 97.129 65 80 94 65 109 94 1 1 1 1 1 1 9639.5 8446 858 8368 13342 17395 17395 163 1 HYGPGWVSMANAGK Unmodified 1473.6823 0.68231804 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 8.33 0.471 2 1 47.741 47.741 3;4 7.4198E-17 12671 TMT1-7 142.83 115.86 576.72 818.28 661.27 480.6 827.12 887.83 545 816 679 490 841 855 4 4 4 4 4 4 72185 8447 858 8368 13343;13344;13345 17396;17397;17398;17399 17396 4 HYLAEAK Unmodified 830.42865 0.42865276 2952 Q9Y259 CHKB Choline/ethanolamine kinase yes yes 0 0 0 0 0 5 0 1 33.266 33.266 3 0.0046756 7348 TMT1-4 94.407 21.368 84.89 77.828 93.772 63.72 92.302 90.108 80 80 94 65 94 87 1 1 1 1 1 1 7893.8 8448 2952 8369 13346 17400 17400 1 HYLFDVQR Unmodified 1076.5403 0.54032847 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 43.468 43.468 3 0.0013407 11021 TMT1-6 103.83 72.411 76.139 94.141 107.98 88.033 91.169 121.05 72 95 109 88 95 116 2 2 2 2 2 2 44959 8449 875 8370 13347;13348 17401;17402 17402 2 HYLGHNDDIK Unmodified 1210.5731 0.57308516 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 4.5 0.5 1 1 31.897 31.897 4 9.0016E-05 7084 TMT1-3 112.71 77.824 337.07 583.74 382.29 333.87 388.71 387.59 319 576 401 333 399 374 2 2 2 2 2 2 18095 8450 374 8371 13349;13350 17403;17404 17403 2 HYLMCER Unmodified 1007.4317 0.431706 2817 Q9P126-2;Q9P126 CLEC1B C-type lectin domain family 1 member B yes no 0 0 0 0 0 5 0 1 31.308 31.308 3 0.032522 6594 TMT1-4 58.286 37.627 68.86 102.86 61.539 51.028 55.706 76.228 65 102 65 51 58 73 1 1 1 1 1 1 1697.1 8451 2817 8372 13351 17405 17405 1 HYSLDDWK Unmodified 1062.4771 0.47705951 1047 P36959 GMPR GMP reductase 1 yes yes 0 0 0 0 0 6 0 1 48.584 48.584 3 0.0099093 13595 TMT1-5 74.269 25.472 194.07 215.5 201.28 197.24 265.38 232.28 183 218 207 196 270 225 1 1 1 1 1 1 11447 8452 1047 8373 13352 17406 17406 1 HYTEAIKR Unmodified 1016.5403 0.54032847 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 9 0 1 28.777 28.777 4 0.024709 4630 TMT1-8 46.129 17.92 13.794 15.884 12.556 10.941 17.757 16.549 13 16 13 11 18 16 1 1 1 1 1 1 938 8453 986 8374 13353 17407 17407 1 IAAADYIPTVEDILR Unmodified 1658.8879 0.88793694 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 5 0 1 81.656 81.656 3 5.795E-05 26422 TMT1-4 85.837 75.641 0 98.983 61.816 57.816 100.69 97.331 0 94 65 58 102 94 0 1 1 1 1 1 22591 8454 785 8375 13354 17408 17408 1 IAAAGLDVTSPEPLPTNHPLLTLK Unmodified 2467.3686 0.36862527 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 8 0 2 69.682 69.682 3;4 2.9507E-29 21360 TMT1-7 131.56 122.85 100.43 176.64 102.91 88.07 105.28 136.64 95 174 109 88 109 131 2 2 2 2 2 2 33254 8455 2843 8376 13355;13356 17409;17410 17409 2 IAAAILNTPDLR Unmodified 1266.7296 0.7295858 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 8 0 1 65.591 65.591 2 1.7108E-08 19685 TMT1-7 143.5 89.085 154.34 103.53 121.9 118.42 116.71 189.62 145 109 124 117 123 181 2 2 2 2 2 2 21110 8456 396 8377 13357 17411;17412 17411 2 IAALQAFADQLIAAGHYAK Unmodified 1971.0578 0.057796236 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 9 0 2 85.168 85.168 3;4 2.3791E-16 25625 TMT1-8 120.9 94.464 115.48 144.38 126.6 132.4 172.08 142.2 109 145 131 131 175 138 4 4 4 4 4 4 27939 8457 1737 8378 13358;13359 17413;17414;17415;17416 17415 4 IAAQAVTK Unmodified 800.4756 0.47560295 2233 Q8NHV1 GIMAP7 GTPase IMAP family member 7 yes yes 0 0 0 0 0 7 0 1 41.364 41.364 2 0.0085835 10110 TMT1-6 101.64 39.644 60.785 164.4 104.23 79.393 97.576 159.25 58 160 109 80 102 152 1 1 1 1 1 1 11270 8458 2233 8379 13360 17417 17417 1 IAAQDLLLAVATDFQNESAAALAAAATR Unmodified 2785.461 0.4610221 2441 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 0 8 0 1 106.66 106.66 4 9.133E-17 33751 TMT1-7 98.133 84.118 4.2137 5.9643 8.1105 3.7358 8.1271 2.017 4 6 8 4 8 2 2 2 2 2 2 1 1717.2 8459 2441 8380 13361 17418;17419 17418 2 IAAQLQGIEADMLDQEAAFMQIQEAK Unmodified 2861.3939 0.39393009 1621 Q08378-4;Q08378-2;Q08378 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 0 8 0 1 92.679 92.679 5 0.031414 30042 TMT1-7 25.604 12.547 23.293 28.813 28.237 29.06 50.743 36.928 22 29 29 29 51 36 1 1 1 1 1 1 6411 8460 1621 8381 13362 17420 17420 1 IAATIISFMQVQK Unmodified 1448.8061 0.80612157 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 9 0 1 85.832 85.832 2 2.937E-10 25836 TMT1-8 108.9 75.037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8461 322 8382 13363 17421 17421 1 IAAWPVSEFFLIR Unmodified 1547.85 0.85003529 2130 Q86YN1 DOLPP1 Dolichyldiphosphatase 1 yes yes 0 0 0 0 0 9 0 1 90.441 90.441 2 0.0018678 27571 TMT1-8 79.311 47.88 23.339 28.943 20.28 37.478 35.163 22.449 22 29 22 36 36 22 1 1 1 1 1 1 7512.1 8462 2130 8383 13364 17422 17422 1 IAAYAYSALSQIR Unmodified 1425.7616 0.76161421 2011 Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 0 0 0 0 0 9 0 1 72.389 72.389 3 1.2221E-12 20592 TMT1-8 134.49 107.78 46.661 50.282 49.973 43.922 63.362 76.01 44 51 51 44 65 73 1 1 1 1 1 1 16059 8463 2011 8384 13365 17423 17423 1 IAAYLFK Unmodified 824.47963 0.47962569 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 67.198 67.198 2 0.0085552 18555 TMT1-8 142.42 76.802 1228.9 1713.4 1387.8 1254.5 1545.1 1546.4 1161 1710 1435 1250 1583 1492 2 2 2 2 2 2 141570 8464 1540 8385 13366 17424;17425 17424 2 IAAYLQSDQFCK Unmodified 1442.6864 0.68640036 827 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 0 0 7 0 1 63.252 63.252 2 1.3599E-06 18758 TMT1-6 99.283 81.617 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8465 827 8386 13367 17426 17426 1 IACAAVDCVK Unmodified 1105.526 0.52600031 1780 Q14554 PDIA5 Protein disulfide-isomerase A5 yes yes 0 0 0 0 0 6 0 1 48.552 48.552 2 0.00055743 13587 TMT1-5 113.71 84.359 53.88 56.511 93.788 95.582 83.508 90.359 51 58 94 94 87 87 1 1 1 1 1 1 9364.3 8466 1780 8387 13368 17427 17427 1 IACLDFSLQK Unmodified 1193.6114 0.6114445 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 8 0 1 67.812 67.812 2 3.0458E-09 20601 TMT1-7 169.09 110.11 76.824 146.95 128.4 92.976 112.38 136.44 73 145 131 94 116 131 1 1 1 1 1 1 22908 8467 770 8388 13369 17428 17428 1 IADDKYNDTFWK Unmodified 1514.7042 0.70415892 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 6.5 0.5 2 2 58.825 58.825 3;4 3.1278E-05 16697 TMT1-6 104.87 68.019 797.18 931.07 663.1 602.72 779.25 839.09 751 936 693 601 799 808 4 4 4 4 4 4 149400 8468 708 8389 13370;13371;13372;13373 17429;17430;17431;17432 17431 4 IADFELPTIIVPEQTIEIPSIK Unmodified 2465.3669 0.36689393 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 7 0 1 93.311 93.311 4 2.2944E-06 30277 TMT1-6 72.644 58.772 15.822 29.439 20.96 22.398 21.198 22.847 15 29 22 22 22 22 1 1 1 1 1 1 5062.9 8469 463 8390 13374 17433 17433 1 IADGYEQAAR Unmodified 1092.52 0.51998696 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 2.5 0.5 1 1 38.788 38.788 2 0.00022601 10749 TMT1-2 127.94 86.37 245.81 319.65 254.34 171.6 240.1 302.29 232 320 261 175 247 290 2 2 2 2 2 2 92456 8470 1161 8391 13375;13376 17434;17435 17435 2 IADLGLASFK Unmodified 1033.5808 0.5807963 1716 Q13546 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 yes yes 0 0 0 0 0 8 0 1 69.753 69.753 3 0.0049044 21388 TMT1-7 51.092 24.419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8471 1716 8392 13377 17436 17436 1 IADMGHLK Unmodified 883.45857 0.45857268 663 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 0 7 0 1 45.354 45.354 3 0.044928 11639 TMT1-6 48.796 7.2941 68.88 110.47 51.778 89.869 113.58 105.49 65 109 58 87 116 102 1 1 1 1 1 1 8303.7 8472 663 8393 13378 17437 17437 1 IADPEHDHTGFLTEYVATR Unmodified 2171.0283 0.028346601 910 P27361;P27361-2;P27361-3 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 0 4 0 1 53.907 53.907 4 2.617E-05 15799 TMT1-3 72.21 52.999 77.143 116.54 100.52 55.375 107.84 105.65 73 116 102 58 109 102 1 1 1 1 1 1 12813 8473 910 8394 13379 17438 17438 1 IADSIGCSTNNILFLTDVTR Unmodified 2209.1049 0.10488236 2871 Q9UHY7;Q9UHY7-2 ENOPH1 Enolase-phosphatase E1 yes no 0 0 0 0 0 7 0 1 79.001 79.001 3 0.014586 24913 TMT1-6 40.137 26.121 61.476 87.534 53.183 90.035 100.27 66.429 58 87 58 87 102 65 1 1 1 1 1 1 6951.4 8474 2871 8395 13380 17439 17439 1 IAEESNFPFIK Unmodified 1293.6605 0.66050319 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 6.5 0.5 1 1 67.45 67.45 3 0.00015622 20401 TMT1-6 72.434 57.462 46.482 81.084 53.956 83.081 60.792 98.469 44 80 58 80 65 94 1 1 1 1 1 1 9474 8475 1129 8396 13381;13382 17440;17441 17441 2 IAEFAFEYAR Unmodified 1215.5924 0.59242362 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 66.879 66.879 2 0.00010383 20774 TMT1-5 139.02 118.36 68.539 133.26 89.749 81.212 46.732 83.946 65 131 94 80 51 80 1 1 1 1 1 1 21055 8476 1213 8397 13383 17442 17442 1 IAEFTTNLTEEEEK Unmodified 1652.7781 0.77811172 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.2 1.17 1 1 3 63.802 63.802 2;3 4.735E-34 19611 TMT1-3 199.7 136.07 1582.8 2054.4 2029.7 1695.4 2162.7 2433.8 1496 2063 2067 1699 2222 2341 8 8 8 8 8 8 1332800 8477 1019 8398 13384;13385;13386;13387;13388 17443;17444;17445;17446;17447;17448;17449;17450 17447 8 IAEFTTNLTEEEEKSK Unmodified 1867.9051 0.90510315 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5 0 1 59.236 59.236 3 1.8887E-11 17574 TMT1-4 122.96 101.72 720.63 968.7 693.53 679.05 518.05 1367.8 680 967 726 668 570 1297 2 2 2 2 2 2 167280 8478 1019 8399 13389 17451;17452 17451 2 IAELCDDPK Unmodified 1059.4907 0.49066067 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 0 1 49.802 49.802 2 4.6851E-08 14201 TMT1-3 141.48 100.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8479 776 8400 13390 17453 17453 1 IAELCDDPKER Unmodified 1344.6344 0.63436479 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 4 0 1 43.634 43.634 3 0.00063426 11741 TMT1-3 96.103 38.929 138.28 237.68 181.79 174.07 280.64 154.02 131 235 189 174 281 152 1 1 1 1 1 1 28920 8480 776 8401 13391 17454 17454 1 IAELVATEFFDQGDR Unmodified 1709.8261 0.82606496 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 5 0 1 85.281 85.281 3 2.8298E-17 27825 TMT1-4 145.92 134.45 46.651 50.254 51.709 52.811 42.065 60.628 44 51 51 51 44 58 3 3 2 2 2 3 18672 8481 322 8402 13392 17455;17456;17457 17456 3 IAELVATEFFDQGDRER Unmodified 1994.9698 0.96976909 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 1 5 0 1 76.248 76.248 3 0.0031757 24273 TMT1-4 59.728 41.811 607.06 908.05 897.37 666.89 750.73 1065.9 575 906 910 672 782 1020 1 1 1 1 1 1 44400 8482 322 8403 13393 17458 17458 1 IAEQEHTQEDLQQLR Unmodified 1836.8966 0.89660415 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 2 0 1 42.284 42.284 3 5.5831E-06 11868 TMT1-1 98.694 91.323 38.035 58.307 50.255 27.757 50.253 52.932 36 58 51 29 51 51 1 1 1 1 1 1 7668.6 8483 2935 8404 13394 17459 17459 1 IAESIPYLK Unmodified 1032.5855 0.58554733 1644 Q12797-10;Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 0 0 0 0 0 7 0 1 62.928 62.928 3 0.0025674 18634 TMT1-6 84.476 47 38.074 50.862 49.956 44.504 32.458 91.816 36 51 51 44 36 87 1 1 1 1 1 1 4087.5 8484 1644 8405 13395 17460 17460 1 IAESNHIK Unmodified 910.48723 0.48723027 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 6.5 1.5 1 1 32.883 32.883 3 0.0010937 7169 TMT1-4 116.05 96.06 344.39 766.37 439.44 407.13 438.86 717.69 327 749 467 404 461 685 2 2 2 2 2 2 84884 8485 195 8406 13396;13397 17461;17462 17461 2 IAESTEWQEK Unmodified 1219.5721 0.57208211 1798 Q14789-4;Q14789-3;Q14789;Q14789-2 GOLGB1 Golgin subfamily B member 1 yes no 0 0 0 0 0 4 0 1 49.243 49.243 3 0.0053349 13979 TMT1-3 50.284 28.726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8486 1798 8407 13398 17463 17463 1 IAETDFEKR Unmodified 1107.556 0.55603812 2478 Q99615-2;Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 1 5 0 1 42.725 42.725 3 0.032153 11122 TMT1-4 57.532 25.311 248.51 296.23 180.8 201.97 253.05 341.36 234 297 193 199 262 327 1 1 1 1 1 1 10568 8487 2478 8408 13399 17464 17464 1 IAEVDASVVR Unmodified 1057.5768 0.57677356 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 48.805 48.805 2 0.00017753 13722 TMT1-3 131.22 87.491 303.47 443.5 378.08 305.16 359.48 393.76 287 442 388 306 370 379 2 2 2 2 2 2 76136 8488 979 8409 13400;13401 17465;17466 17466 2 IAEVDCTAER Unmodified 1162.5288 0.52883709 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 2 0 1 39.547 39.547 2 0.00010383 10778 TMT1-1 139.02 98.518 130.12 166.03 172.25 121.32 151.5 299.49 123 167 174 123 160 285 1 1 1 1 1 1 19333 8489 2205 8410 13402 17467 17467 1 IAEVGAGGNK Unmodified 914.48214 0.48214489 1539 Q00577 PURA Transcriptional activator protein Pur-alpha yes yes 0 0 0 0 0 5 0 1 40.19 40.19 2 0.00063239 10120 TMT1-4 111.46 50.482 139.08 174.05 101.88 110.3 146.93 203.68 131 174 109 109 152 195 1 1 1 1 1 1 17421 8490 1539 8411 13403 17468 17468 1 IAEVGGVPYLLPLVNQK Unmodified 1809.04 0.040020906 2617 Q9H0W9-3;Q9H0W9-2;Q9H0W9 C11orf54 Ester hydrolase C11orf54 yes no 0 0 0 0 0 8.5 0.5 1 1 80.69 80.69 3 5.7486E-06 23784 TMT1-8 71.935 57.906 92.195 131.79 82.532 96.801 112.46 128.97 87 131 88 95 116 124 2 2 2 2 2 2 17003 8491 2617 8412 13404;13405 17469;17470 17470 2 IAFSCPQK Unmodified 949.46914 0.46913736 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 8.5 0.5 1 1 48.601 48.601 3 0.0025324 11227 TMT1-8 81.297 50.007 269.22 369.3 244.97 312.31 343.25 430.46 254 368 261 305 356 413 2 2 2 2 2 2 24036 8492 2688 8413 13406;13407 17471;17472 17472 2 IAFSSTSLLK Unmodified 1065.607 0.60701105 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 0 9 0 1 63.912 63.912 2 3.0185E-08 17265 TMT1-8 160.59 89.085 84.861 85.303 92.292 86.885 143.83 112.09 80 87 94 87 145 109 1 1 1 1 1 1 11525 8493 2980 8414 13408 17473 17473 1 IAGAGLLFVGGGIGGTILYAK Unmodified 1947.1193 0.11933386 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 9 0 1 87.33 87.33 3 4.5931E-09 26462 TMT1-8 78.012 51.283 30.771 35.765 27.762 29.527 27.394 46.122 29 36 29 29 29 44 1 1 1 1 1 1 4975.1 8494 1913 8415 13409 17474 17474 1 IAGDYVSEEVWYR Unmodified 1585.7413 0.7412727 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 4 0 1 64.205 64.205 2 9.2782E-08 19894 TMT1-3 122.77 95.976 30.491 66.283 49.087 44.098 56.831 52.744 29 65 51 44 58 51 1 1 1 1 1 1 10953 8495 335;369 8416 13410 17475 17475 1 IAGEASR Unmodified 702.36605 0.3660525 239;524 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q6DRA6;Q6DN03 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 0 0 0 0 0 3.67 1.97 1 1 1 1 1 1 26.259 26.259 2 3.7294E-12 5822 TMT1-2 180 68.186 13308 17370 13794 15703 21389 14645 12561 17385 14420 15487 21619 14311 12 12 12 12 12 12 2083900 8496 239;524 8417 13411;13412;13413;13414;13415;13416 17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487 17481 12 IAGFDER Unmodified 806.39227 0.39226725 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 4 0 1 44.289 44.289 2 0.01086 12025 TMT1-3 106.29 48.727 253.89 281.86 191.35 275.47 263.8 326.13 239 284 205 267 275 313 1 1 1 1 1 1 23431 8497 1507 8418 13417 17488 17488 1 IAGHPLAQNER Unmodified 1204.6313 0.63126874 2921 Q9UMY4-1;Q9UMY4;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 0 5 0 1 29.387 29.387 3 6.1489E-08 5861 TMT1-4 108.31 77.744 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8498 2921 8419 13418 17489 17489 1 IAGQVAAANK Unmodified 941.52943 0.52942943 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 0 7 0 1 40.578 40.578 2 8.9823E-05 9775 TMT1-6 140.5 98.609 160.9 218.03 183.85 151.56 192.11 203.45 152 218 189 152 197 196 2 2 2 2 2 2 27671 8499 1060 8420 13419 17490;17491 17490 2 IAGQVAAANKK Unmodified 1069.6244 0.62439245 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 1 9 0 1 38.362 38.362 3 0.0003836 7527 TMT1-8 96.113 71.418 108.46 107.4 75.28 96.275 105.3 124.92 102 109 80 94 109 120 1 1 1 1 1 1 8523.6 8500 1060 8421 13420 17492 17492 1 IAGYVTHLMK Unmodified 1131.6111 0.61105057 576 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 0 9 0 1 57.614 57.614 3 0.00047395 14729 TMT1-8 96.668 63.547 68.87 102.88 59.796 90.105 75.625 114.04 65 102 65 87 80 109 1 1 1 1 1 1 12884 8501 576 8422 13421 17493 17493 1 IAHFLDR Unmodified 870.47119 0.47118627 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 7 0 1 44.977 44.977 3 0.0043932 11538 TMT1-6 95.541 47.426 122.9 159.81 128.49 68.282 204.61 133.81 116 160 131 73 203 131 1 1 1 1 1 1 13044 8502 1353 8423 13422 17494 17494 1 IAHLAQIEDDR Unmodified 1279.6521 0.65206377 16 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 43.646 43.646 3 0.00090099 11764 TMT1-3 61.344 44.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8503 16 8424 13423 17495 17495 1 IAIFGATGQTGLTTLAQAVQAGYEVTVLVR Unmodified 3047.6655 0.66553557 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 9 0 1 102.07 102.07 4 2.2067E-06 31945 TMT1-8 55.158 42.844 14.791 29.628 13.798 30.748 6.7267 23.26 14 29 15 29 7 22 2 2 1 2 1 2 2234 8504 946 8425 13424 17496;17497 17497 2 IAILDIEPQTLK Unmodified 1352.7915 0.79151736 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 6.5 0.5 1 1 73.856 73.856 3 0.00039285 22976 TMT1-6 87.363 55.301 185.89 184.82 160.36 210.74 142.28 204.88 175 188 168 204 152 196 3 3 3 3 3 3 38259 8505 1534 8426 13425;13426 17498;17499;17500 17500 3 IAILTCPFEPPKPK Unmodified 1609.8902 0.89018555 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 1 9 0 1 64.666 64.666 4 0.0001809 17534 TMT1-8 79.633 67.006 383.73 559.55 495.65 342.32 452.14 539.29 363 558 505 348 465 518 3 3 3 3 3 3 18118 8506 1161 8427 13427 17501;17502;17503 17502 3 IAIPGLAGAGNSVLLVSNLNPER Unmodified 2274.2696 0.26957993 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 9 0 2 81.421 81.421 3;4 5.8894E-79 24166 TMT1-8 203.81 177.37 115.98 114.47 67.913 81.279 112.37 152.43 109 116 73 80 116 146 3 3 3 3 3 3 55082 8507 901 8428 13428;13429 17504;17505;17506 17505 3 IAIVNHDK Unmodified 908.50797 0.50796571 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 6 0 1 37.834 37.834 3 0.014072 9327 TMT1-5 68.224 38.148 160.66 229.22 215.73 149.56 197.61 228.88 152 229 219 152 203 220 1 1 1 1 1 1 9671.5 8508 1383 8429 13430 17507 17507 1 IAIWTTECENR Unmodified 1391.6503 0.65034921 513 P06730;P06730-3;P06730-2 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 0 6 0 1 56.467 56.467 2 0.00072124 16702 TMT1-5 72.922 45.824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8509 513 8430 13431 17508 17508 1 IAIYELLFK Unmodified 1108.6532 0.65323296 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 0 9 0 1 86.141 86.141 2 0.012217 25984 TMT1-8 89.698 58.326 363.62 671.98 534.26 516.78 700.5 749.66 345 663 554 514 717 722 2 2 2 2 2 2 57326 8510 1137 8431 13432 17509;17510 17510 2 IAKGGVNDNFQGVLQNVR Unmodified 1928.0228 0.022807713 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 8 0 1 55.84 55.84 3 8.2213E-14 15899 TMT1-7 117.53 96.879 99.763 68.833 126.36 46.879 70.833 98.183 94 73 123 51 73 94 1 1 1 1 1 1 12087 + 8511 32;554 8432 13433 17511 17511 1 IALETSLSK Unmodified 960.54916 0.54916182 995 P32942 ICAM3 Intercellular adhesion molecule 3 yes yes 0 0 0 0 0 7 0 1 55.495 55.495 2 0.00041607 15714 TMT1-6 138.4 53.898 184.36 269.98 164 160.34 253.41 203.84 174 268 174 160 256 198 1 1 1 1 1 1 20124 8512 995 8433 13434 17512 17512 1 IALLNVELELK Unmodified 1253.7595 0.75948895 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 7 0 1 79.274 79.274 2 0.00047436 25026 TMT1-6 103.34 64.32 38.212 51.245 26.463 36.981 41.987 68.092 36 51 29 36 44 65 1 1 1 1 1 1 4531.2 8513 2496 8434 13435 17513 17513 1 IALLPLLQAETDRR Unmodified 1607.9359 0.93589019 2810 Q9P0J0;Q9P0J0-2 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 0 0 0 0 1 9 0 1 69.412 69.412 3 1.2088E-09 19485 TMT1-8 116.19 75.461 93.355 124.4 74.322 96.605 90.775 121.07 88 124 80 94 95 116 2 2 2 2 2 2 23517 8514 2810 8435 13436 17514;17515 17515 2 IALLQSLLDDANLR Unmodified 1553.8777 0.8777066 2118 Q86VS8 HOOK3 Protein Hook homolog 3 yes yes 0 0 0 0 0 9 0 1 89.744 89.744 3 4.9881E-05 27315 TMT1-8 84.468 65.636 55.207 57.144 50.573 44.548 28.159 61.024 52 58 52 44 29 58 2 2 2 2 1 2 9110 8515 2118 8436 13437 17516;17517 17516 2 IALTDNALIAR Unmodified 1169.6768 0.67682195 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 0 7 0 1 58.948 58.948 2 1.8057E-06 17060 TMT1-6 104.43 56.691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8516 775 8437 13438 17518 17518 1 IALVSEADSESR Unmodified 1275.6307 0.63065962 328 O94886 TMEM63A CSC1-like protein 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 50.176 50.176 2 3.4541E-19 15300 TMT1-2 191.24 153.68 61.529 63.937 64.253 43.346 48.73 76.427 58 65 65 44 51 73 1 1 1 1 1 1 14252 8517 328 8438 13439;13440 17519;17520 17520 2 IALYETPTGWK Unmodified 1277.6656 0.66558856 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 8 0 1 64.67 64.67 2 8.1289E-07 19357 TMT1-7 145.34 99.343 130.34 150.46 148.55 139.92 109.45 158.91 123 152 152 138 116 152 1 1 1 1 1 1 30924 8518 1043 8439 13441 17521 17521 1 IANAYIIK Unmodified 904.5382 0.53820321 2392 Q96DB5 RMDN1 Regulator of microtubule dynamics protein 1 yes yes 0 0 0 0 0 8 0 1 55.666 55.666 2 0.0096932 15817 TMT1-7 100.19 41.611 68.768 93.965 84.555 80.689 90.972 106.14 65 94 87 80 94 102 1 1 1 1 1 1 8286.4 8519 2392 8440 13442 17522 17522 1 IANFVEHK Unmodified 956.50797 0.50796571 3066 Q9Y6Y8-2;Q9Y6Y8 SEC23IP SEC23-interacting protein yes no 0 0 0 0 0 7 0 1 46.364 46.364 3 0.01297 12030 TMT1-6 69.825 20.466 69.049 72.083 55.82 50.802 85.824 82.831 65 73 58 51 87 80 1 1 1 1 1 1 10357 8520 3066 8441 13443 17523 17523 1 IANLQTDLSDGLR Unmodified 1414.7416 0.74160705 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.25 1.92 1 2 1 62.111 62.111 2 1.4871E-218 18846 TMT1-4 340.93 251.88 2128.6 2675.3 2462.7 1982.8 2362.1 2730.8 2010 2688 2516 1989 2435 2625 7 7 7 7 7 7 1315800 8521 831 8442 13444;13445;13446;13447 17524;17525;17526;17527;17528;17529;17530 17526 7 IANPVEGSSGR Unmodified 1085.5465 0.54653606 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 37.512 37.512 2 1.1173E-16 9391 TMT1-3 185.33 104.21 401.48 423.83 332.19 379.18 346.69 453.82 378 429 348 371 363 435 3 3 3 3 3 3 91354 8522 1843 8443 13448;13449 17531;17532;17533 17532 3 IANPVEGSTDR Unmodified 1157.5677 0.56766543 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 0 3.5 0.5 1 1 39.474 39.474 2 1.2128E-11 10041 TMT1-3 172.1 105.07 198.81 314.83 223.13 204.01 300.95 253.65 188 312 233 204 305 246 3 3 3 3 3 3 79938 8523 1844 8444 13450;13451 17534;17535;17536 17536 3 IANVFTNAFR Unmodified 1151.6087 0.60874239 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 9 0 1 66.406 66.406 2 3.1453E-06 18296 TMT1-8 146.88 104.9 456.98 823.38 584.38 488.68 583.14 701.84 433 812 608 489 602 674 2 2 2 2 2 2 236380 8524 489 8445 13452 17537;17538 17538 2 IANVSILK Unmodified 856.5382 0.53820321 2623 Q9H267 VPS33B Vacuolar protein sorting-associated protein 33B yes yes 0 0 0 0 0 9 0 1 57.833 57.833 2 0.012411 14891 TMT1-8 85.67 23.47 99.506 114.53 130.9 77.792 98.163 144.31 94 116 131 80 102 138 1 1 1 1 1 1 6934.6 8525 2623 8446 13453 17539 17539 1 IAPELYHK Unmodified 969.52837 0.5283668 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 6.5 0.5 1 1 45.266 45.266 3 0.0031117 12190 TMT1-5 91.853 50.971 331.76 281.71 267.88 273.37 249.01 332.95 312 290 276 269 261 319 2 2 2 2 2 2 25447 8526 1820 8447 13454;13455 17540;17541 17540 2 IAPGAVVCVESEIR Unmodified 1498.7814 0.78136338 64 O00399 DCTN6 Dynactin subunit 6 yes yes 0 0 0 0 0 5 0 1 60.683 60.683 3 0.00095653 18183 TMT1-4 55.291 44.347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8527 64 8448 13456 17542 17542 1 IAPTTELVPK Unmodified 1067.6227 0.62266112 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 9 0 1 33.765 33.765 4 0.042604 6057 TMT1-8 35.224 9.2855 38.145 34.868 51.658 27.821 42.408 68.08 36 36 51 29 44 65 1 1 1 1 1 1 2084.4 8528 2447 8449 13457 17543 17543 1 IAPVFFR Unmodified 848.49086 0.49085908 2020 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 0 0 0 9 0 1 61.744 61.744 2 0.019211 16419 TMT1-8 95.378 54.17 130.57 151.09 109.51 140.84 184.23 203.68 123 152 116 138 189 196 1 1 1 1 1 1 10694 8529 2020 8450 13458 17544 17544 1 IAQDLEMYGINYFEIK Unmodified 1945.9496 0.94955092 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 6 0 1 86.896 86.896 3 4.5604E-07 28573 TMT1-5 101.15 96.906 23.335 28.932 20.952 22.403 20.942 30.316 22 29 22 22 22 29 1 1 1 1 1 1 4664.2 8530 720 8451 13459 17545 17545 1 IAQDLEMYGVNYFSIK Oxidation (M) 1905.9183 0.91825079 894 P26038 MSN Moesin yes yes 0 0 1 0 0 7 0 2 81.163 81.163 3;4 3.027E-05 25760 TMT1-6 82.349 55.914 92.012 122.64 121.11 117.51 109.64 183.42 87 123 124 116 116 175 2 2 2 2 2 2 19246 8531 894 8452 13460;13461 17546;17547 17547 168 2 IAQDLEMYGVNYFSIK Unmodified 1889.9233 0.92333617 894 P26038 MSN Moesin yes yes 0 0 0 0 0 7.5 0.5 2 2 83.635 83.635 3;4 1.4049E-26 26684 TMT1-6 179.9 172.51 299.67 445.18 293.46 357.08 307.89 516.75 283 442 312 348 327 493 6 6 6 6 6 6 125680 8532 894 8452 13462;13463;13464;13465 17548;17549;17550;17551;17552;17553 17548 6 IAQETFDAAVR Unmodified 1219.6197 0.619701 2021 Q6NXE6-2;Q6NXE6 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 0 0 4 0 1 52.058 52.058 2 0.0078343 15082 TMT1-3 81.335 33.178 116.08 114.76 49.863 121.72 111.61 120.47 109 116 58 116 116 116 1 1 1 1 1 1 10630 8533 2021 8453 13466 17554 17554 1 IAQLEEELEEEQGNTELINDR Unmodified 2471.1664 0.16635622 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 1.86 0.833 3 2 2 75.215 75.215 3;4 2.0665E-45 24418 TMT1-1 182 161.53 317.29 467.92 205.61 332.43 349.17 393.61 299 463 212 321 360 378 11 11 10 11 10 11 489190 8534 1019 8454 13467;13468;13469;13470;13471;13472;13473 17555;17556;17557;17558;17559;17560;17561;17562;17563;17564;17565;17566 17559 12 IAQLEEQLDNETK Unmodified 1529.7573 0.7573167 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2.86 0.99 1 1 3 2 64.281 64.281 2;3 2.1772E-60 20880 TMT1-2 240.92 210.43 2325.3 4063.8 3579.2 2983.6 3725.6 4180.1 2206 4023 3667 2989 3830 4021 11 11 11 11 11 11 1238300 8535 1019 8455 13474;13475;13476;13477;13478;13479;13480 17567;17568;17569;17570;17571;17572;17573;17574;17575;17576;17577;17578 17572 12 IAQLEEQLDNETKER Unmodified 1814.901 0.90102082 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2.8 0.748 2 2 1 58.602 58.602 3;4 2.8667E-11 17526 TMT1-3 128.45 115.03 1501.9 1910.1 1503.3 1183.8 984.77 2361.9 1417 1914 1551 1182 1071 2242 7 7 7 7 7 7 458100 8536 1019 8456 13481;13482;13483;13484;13485 17579;17580;17581;17582;17583;17584;17585 17585 7 IAQSDYIPTQQDVLR Unmodified 1745.8948 0.89481323 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 4.5 0.5 1 1 57.967 57.967 3 4.0321E-08 17414 TMT1-3 113.52 88.178 299.44 518.12 449.66 322.91 351.57 417.43 284 513 459 326 364 401 2 2 2 2 2 2 219210 8537 480 8457 13486;13487 17586;17587 17586 2 IASEASR Unmodified 732.37662 0.37661719 2168;2498 Q8N257;Q99880;Q96A08 HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 0 2.5 0.5 1 1 26.544 26.544 2 9.213E-05 5873 TMT1-2 154.92 82.301 453.09 440.21 480.96 412.16 562.73 332.52 427 450 488 413 567 327 4 4 4 4 4 4 72605 8538 2168;2498 8458 13488;13489 17588;17589;17590;17591 17590 4 IASGLGLAWIVGR Unmodified 1311.7663 0.76630566 110 O14880 MGST3 Microsomal glutathione S-transferase 3 yes yes 0 0 0 0 0 9 0 1 78.64 78.64 2 0.0021663 23015 TMT1-8 76.302 52.272 46.544 65.067 57.07 34.737 64.334 59.992 44 65 58 36 65 58 1 1 1 1 1 1 17350 8539 110 8459 13490 17592 17592 1 IASLEVENQSLR Unmodified 1357.7201 0.72014333 941 P29692;P29692-2;P29692-3 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 4.5 0.5 1 1 53.58 53.58 2 1.3512E-08 15656 TMT1-3 145.95 94.414 138.91 193.01 114.17 148.93 146.44 166.38 131 192 123 145 152 160 1 1 1 1 1 1 35544 8540 941 8460 13491;13492 17593;17594 17593 2 IASLPQEVQDVSLLEK Unmodified 1767.9618 0.96183016 2712 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 0 6 0 1 74.489 74.489 3 0.024444 23796 TMT1-5 43.37 12.932 146.24 182.28 153.81 171.35 165 266.06 138 183 160 168 174 254 1 1 1 1 1 1 8594.4 8541 2712 8461 13493 17595 17595 1 IASNAGSIA Unmodified 802.41848 0.418482 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 5 0 1 46.163 46.163 2 0.031877 12444 TMT1-4 73.26 51.156 84.649 108.46 108.2 62.998 85.006 90.316 80 109 109 65 87 87 1 1 1 1 1 1 28200 8542 1446 8462 13494 17596 17596 1 IASVLGISTPK Unmodified 1084.6492 0.64921022 2161 Q8N128;Q8N128-2 FAM177A1 Protein FAM177A1 yes no 0 0 0 0 0 9 0 1 64.504 64.504 2 4.8946E-11 17500 TMT1-8 158.79 82.726 61.554 80.195 46.321 83.945 39.021 91.629 58 80 51 80 44 87 1 1 1 1 1 1 6758.4 8543 2161 8463 13495 17597 17597 1 IASWADLVNAHVVPGSGVVK Unmodified 2018.0949 0.094910023 644 P11172;P11172-2;P11172-3 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 0 9 0 1 71.396 71.396 4 0.031031 20283 TMT1-8 30.587 8.0536 30.774 44.406 20.009 21.908 50.266 60.394 29 44 22 22 51 58 1 1 1 1 1 1 6422.8 8544 644 8464 13496 17598 17598 1 IATEKDFLEAVNK Unmodified 1476.7824 0.78240924 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 1 6 0 1 60.941 60.941 3 0.00074209 18493 TMT1-5 80.318 50.775 77.634 62.862 63.584 57.992 85.75 75.371 73 65 65 58 87 73 1 1 1 1 1 1 9749.6 8545 1033 8465 13497 17599 17599 1 IATGHGQQGVTQVVLK Unmodified 1634.9104 0.91040372 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 8 0 1 45.679 45.679 3 1.4441E-06 11894 TMT1-7 79.471 47.832 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8546 1248 8466 13498 17600 17600 1 IATIPAFGTIMETVIQR Unmodified 1860.0179 0.017905256 2823 Q9P260;Q9P260-2 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 yes no 0 0 0 0 0 9 0 1 88.247 88.247 3 0.0033746 26815 TMT1-8 50.387 33.817 23.415 21.598 13.799 22.83 20.922 30.317 22 22 15 22 22 29 1 1 1 1 1 1 2493.5 8547 2823 8467 13499 17601 17601 1 IATSLDGFDVASVQQQR Unmodified 1833.9221 0.92209062 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 6 0 1 64.453 64.453 3 1.3251E-19 19841 TMT1-5 140.6 129.96 61.188 110.48 82.184 112.55 90.057 90.172 58 109 87 109 94 87 1 1 1 1 1 1 28881 8548 231 8468 13500 17602 17602 1 IAVAAQNCYK Unmodified 1136.5648 0.56482866 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 7.67 0.471 1 2 45.45 45.45 2;3 3.3536E-05 11740 TMT1-7 149.4 124.48 999.08 1816.1 1327.4 1307.7 1346.6 1620.3 947 1791 1386 1292 1398 1556 4 4 4 4 4 4 230150 8549 1352 8469 13501;13502;13503 17603;17604;17605;17606 17605 4 IAVEPVNPSELPK Unmodified 1391.766 0.76603089 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 5.5 0.5 1 1 60.298 60.298 3 0.0066578 18169 TMT1-5 60.628 40.201 146.15 188.51 163.51 115.23 154.25 197.07 138 189 167 117 159 189 2 2 2 2 2 2 16266 8550 1816 8470 13504;13505 17607;17608 17608 2 IAVGSDADLVIWDPDSVK Unmodified 1898.9626 0.96255845 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 5 0 2 77.929 77.929 3;4 2.071E-19 24899 TMT1-4 136.01 126.28 100.15 56.35 71.142 88.847 106.56 98.229 94 58 73 87 109 95 2 1 2 2 2 2 39586 8551 1892 8471 13506;13507 17609;17610 17609 2 IAVHCTVR Unmodified 954.50692 0.50691985 1459 P62913-2;P62913 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 0 8 1 1 1 29.926 29.926 3 0.005209 4858 TMT1-8 69.905 33.335 46.431 76.624 66.349 78.076 55.159 55.99 44 76 69 76 58 54 2 2 2 2 2 2 4703.4 8552 1459 8472 13508;13509 17611;17612 17612 2 IAVMELFRPK Unmodified 1202.6845 0.68454987 1888 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 1 9 0 1 65.966 65.966 3 0.0013675 18109 TMT1-8 87.298 58.342 68.762 93.948 85.625 56.691 85.04 97.777 65 94 87 58 87 94 1 1 1 1 1 1 9689.8 8553 1888 8473 13510 17613 17613 1 IAVSIEDEANK Unmodified 1187.6034 0.60338224 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6;Q9NZB2-5 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 6 0 1 56.023 56.023 2 0.023322 16524 TMT1-5 69.812 21.529 145.7 243.39 192.17 151.11 190.21 229.09 138 241 198 152 196 220 1 1 1 1 1 1 42398 8554 2795 8474 13511 17614 17614 1 IAVVGAGIGGSAVAHFLQQHFGPR Unmodified 2388.2815 0.28148202 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 0 9 0 1 72.546 72.546 4 4.2917E-16 20755 TMT1-8 89.859 73.365 84.87 100.44 77.926 48.932 115.21 112.91 80 101 80 51 116 109 2 2 2 2 2 2 15452 8555 2202 8475 13512 17615;17616 17616 2 IAVVGEGR Unmodified 799.4552 0.45520186 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 4 1.87 1 1 1 1 39.953 39.953 2 7.0176E-05 9901 TMT1-4 157.86 65.673 1206.5 1698.1 1372.3 1212.3 1219 1778.5 1140 1694 1418 1205 1277 1701 5 5 5 5 5 5 356970 8556 250 8476 13513;13514;13515;13516 17617;17618;17619;17620;17621 17619 5 IAVYSCPFDGMITETK Unmodified 1830.8532 0.85320769 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 7 0 2 71.057 71.057 2;3 9.6397E-11 21824 TMT1-6 117.86 107.25 84.682 92.36 116.37 71.139 91.155 113.59 80 94 116 73 94 109 2 2 2 2 2 2 24891 8557 1232 8477 13517;13518 17622;17623 17623 2 IAWALSR Unmodified 815.46537 0.46537261 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 0 9 0 1 56.3 56.3 2 0.00027629 14258 TMT1-8 126.16 50.022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8558 1586 8478 13519 17624 17624 1 IAWTHITIPESLR Unmodified 1535.846 0.84601255 2612 Q9H0E2;Q9H0E2-2 TOLLIP Toll-interacting protein yes no 0 0 0 0 0 9 0 1 63.043 63.043 3 0.00072656 16939 TMT1-8 69.846 41.119 77.257 124.41 74.739 89.045 84.615 66.875 73 123 80 87 87 65 1 1 1 1 1 1 13877 8559 2612 8479 13520 17625 17625 1 IAYFTLPK Unmodified 951.54295 0.54295423 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 9 0 1 66.588 66.588 2 0.010726 18270 TMT1-8 89.142 43.83 53.886 72.718 79.016 65.3 55.05 76.247 51 73 80 65 58 73 1 1 1 1 1 1 8578.2 8560 2328 8480 13521 17626 17626 1 IAYVSQQPWVFSGTLR Unmodified 1850.9679 0.9679186 148 O15439-2;O15439;O15439-4;O15439-3 ABCC4 Multidrug resistance-associated protein 4 yes no 0 0 0 0 0 9 0 1 72.616 72.616 3 0.00029707 20709 TMT1-8 60.918 37.692 54.184 57.358 41.903 44.689 48.155 91.368 51 58 44 44 51 87 1 1 1 1 1 1 7187.3 8561 148 8481 13522 17627 17627 1 ICALDDNVCMAFAGLTADAR Unmodified 2182.9809 0.98094418 108 O14818;O14818-4 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 0 6 0 1 79.4 79.4 3 0.00014786 25720 TMT1-5 54.225 43.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8562 108 8482 13523 17628 17628 1 ICDDELILIK Unmodified 1230.653 0.65297497 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 5 0 1 69.912 69.912 3 0.014643 21770 TMT1-4 59.908 23.948 146.37 180.49 133.25 101 135.04 135.79 138 181 138 102 138 131 1 1 1 1 1 1 29517 8563 770 8483 13524 17629 17629 1 ICDFENASKPQSIQESTGSIIEVLSK Unmodified 2879.4223 0.42225334 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 7 0 1 75.54 75.54 5 0.0082896 23556 TMT1-6 38.874 27.351 37.998 65.759 50.149 20.105 50.605 52.922 36 65 51 22 51 51 1 1 1 1 1 1 8802.1 8564 1250 8484 13525 17630 17630 1 ICDGVQFGAGIR Unmodified 1291.6343 0.63430521 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 0 6 0 2 54.577 54.577 2;3 0.0080788 15960 TMT1-5 61.435 37.83 115.42 144.24 135.26 108.13 156.43 173.56 109 145 138 109 160 167 2 2 2 2 2 2 14660 8565 3023 8485 13526;13527 17631;17632 17632 2 ICDPYAWLEDPDSEQTK Unmodified 2065.8939 0.89388653 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 4 0 1 73.061 73.061 3 1.3971E-05 23302 TMT1-3 82.707 79.419 53.95 88.006 55.274 43.315 78.839 83.03 51 87 58 44 80 80 2 2 2 2 2 2 10053 8566 1150 8486 13528 17633;17634 17633 2 ICDQWDALGSLTHSR Unmodified 1757.8155 0.81551705 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 8 0 1 60.834 60.834 3 1.2564E-07 17841 TMT1-7 106.19 97.592 122.13 211.64 213.35 206.75 128.06 197.82 116 210 218 203 138 189 1 1 1 1 1 1 51231 8567 195 8487 13529 17635 17635 1 ICDQWDNLGALTQK Unmodified 1660.7879 0.78790532 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 4 3 1 1 68.996 68.996 3 2.08E-10 20981 TMT1-6 122.2 101.53 1010.3 1248.7 1550.4 1144.5 1123 1708.7 956 1262 1554 1151 1180 1633 2 2 2 2 2 2 311390 8568 672 8488 13530;13531 17636;17637 17637 2 ICDYLFNVSDSSALNLAK Unmodified 2028.9826 0.98264196 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 7 0 1 80.17 80.17 3 7.2199E-06 25411 TMT1-6 81.346 58.472 23.218 44.795 27.263 29.409 35.278 29.907 22 44 29 29 36 29 1 1 1 1 1 1 7701.2 8569 1319 8489 13532 17638 17638 1 ICEPGYSPTYK Unmodified 1313.5962 0.59618837 544 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 0 5 0 1 48.774 48.774 3 0.040257 13565 TMT1-4 45.915 23.84 108.09 145.25 104.11 102.61 141.79 150.52 102 145 109 102 145 145 1 1 1 1 1 1 16703 8570 544 8490 13533 17639 17639 1 ICEVINEAVWK Unmodified 1359.6857 0.68567208 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 71.59 71.59 2;3 0.00017476 22656 TMT1-5 109.6 40.864 123.2 105.61 123.37 86.318 75.542 121.5 116 109 124 87 80 116 2 2 2 2 2 2 16497 8571 934 8491 13534;13535 17640;17641 17640 2 ICFELLELLK Unmodified 1276.7101 0.71009592 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 8 0 1 91.835 91.835 3 0.00081871 29702 TMT1-7 93.649 68.794 14.911 6.2195 13.341 30.51 20.825 22.858 14 7 14 29 22 22 1 1 1 1 1 1 2035.9 8572 286 8492 13536 17642 17642 1 ICFNIGCMYTILK Unmodified 1631.7874 0.78737673 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 9 0 1 82.792 82.792 3 0.0046925 24648 TMT1-8 56.951 26.513 69.281 41.429 42.791 44.488 56.007 76.22 65 44 44 44 58 73 1 1 1 1 1 1 3961.2 8573 799 8493 13537 17643 17643 1 ICGDIHGQYTDLLR Unmodified 1659.8039 0.80388973 1414 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 0 0 5 0 1 54.566 54.566 3 6.0298E-17 15807 TMT1-4 145.1 135.57 146.29 141.42 179.42 161.61 137.13 207.15 138 145 181 160 145 198 1 1 1 1 1 1 29441 8574 1414 8494 13538 17644 17644 1 ICGDIHGQYYDLLR Unmodified 1721.8195 0.8195398 1413;1044 P36873;P36873-2;P62136;P62136-2 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 0 5.5 0.5 1 1 57.387 57.387 3 1.5398E-05 17031 TMT1-5 96.135 92.033 169.4 248.51 171.87 184.33 173.07 257.3 160 247 181 181 182 246 2 2 2 2 2 2 41280 8575 1044;1413 8495 13539;13540 17645;17646 17646 2 ICHQIEYYFGDFNLPR Unmodified 2070.9622 0.96218129 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 7 0 2 70.423 70.423 3;4 5.5626E-07 21588 TMT1-6 100.41 97.384 77.275 101.8 90.956 95.505 96.558 136.89 73 102 94 94 101 131 2 2 2 2 2 2 29557 8576 498 8496 13541;13542 17647;17648 17648 2 ICLDILK Unmodified 873.49937 0.49937486 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 0 8 0 1 67.36 67.36 2 0.0050401 20409 TMT1-7 135.35 49.237 281.65 472.04 413.68 198.84 436.85 415 267 468 418 212 440 401 1 1 1 1 1 1 91838 8577 1377 8497 13543 17649 17649 1 ICLDILKDK Unmodified 1116.6213 0.62128091 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 1 8 0 1 62.175 62.175 3 0.003448 18378 TMT1-7 89.029 44.264 267.01 331.48 288.49 236.69 274.36 314.1 252 333 296 237 283 302 1 1 1 1 1 1 29603 8578 1377 8498 13544 17650 17650 1 ICLDLQALLYK Unmodified 1348.7425 0.74245868 636 P10720 PF4V1 Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) yes yes 0 0 0 0 0 9 0 2 60.254 60.254 3;4 0.0056469 25009 TMT1-8 61.344 38.811 572.93 984.2 616.82 575.19 820.17 750.51 542 971 651 574 834 726 3 3 3 3 3 3 126410 8579 636 8499 13545;13546 17651;17652;17653 17653 3 ICLDLQAPLYK Unmodified 1332.7112 0.71115855 449 P02776 PF4 Platelet factor 4;Platelet factor 4, short form yes yes 0 0 0 0 0 6.6 2.87 1 1 2 1 70.792 70.792 2;3 1.2346E-06 19761 TMT1-8 110.38 61.585 10159 14700 13924 10429 15532 17445 9614 14678 14161 10568 15880 16781 9 9 9 9 9 9 2201000 8580 449 8500 13547;13548;13549;13550;13551 17654;17655;17656;17657;17658;17659;17660;17661;17662;17663 17663 10 ICLDLQAPLYKK Unmodified 1460.8061 0.80612157 449 P02776 PF4 Platelet factor 4;Platelet factor 4, short form yes yes 0 0 0 0 1 9 0 2 63.194 63.194 3;4 4.9645E-05 16979 TMT1-8 101.6 64.614 890.64 1070.9 707.68 763.29 643.39 1443.1 839 1074 749 748 696 1371 2 2 2 2 2 2 104470 8581 449 8501 13552;13553 17664;17665 17664 2 ICLDPDAPR Unmodified 1055.507 0.50697943 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 5.38 2.5 1 1 1 1 1 1 1 1 49.049 49.049 2 5.9132E-06 14958 TMT1-2 161.9 108.34 10922 15257 12826 9927.8 15313 15164 10322 15233 13160 10046 15573 14635 14 14 14 14 14 14 3453200 8582 448 8502 13554;13555;13556;13557;13558;13559;13560;13561 17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680 17669 15 ICLEYWNHLAAELYR Unmodified 1949.9458 0.94580295 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 1 76.337 76.337 3 0.0048042 22162 TMT1-8 53.828 37.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8583 121 8503 13562 17681 17681 1 ICLTDHFKPLWAR Unmodified 1655.8606 0.86061675 2995 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 0 0 0 0 1 9 0 1 59.437 59.437 4 0.028698 15506 TMT1-8 50.563 27.645 199.91 241.45 280.54 179.73 189.76 295.2 189 244 281 183 199 282 1 1 1 1 1 1 13429 8584 2995 8504 13563 17682 17682 1 ICMDEDGNEK Unmodified 1209.4642 0.46418792 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 44.177 44.177 3 0.003038 12973 TMT1-2 78.098 61.626 53.812 56.323 105.33 31.144 102.43 82.357 51 58 102 36 102 80 1 1 1 1 1 1 5615.3 8585 471 8505 13564 17683 17683 1 ICMNEDPAK Oxidation (M) 1092.458 0.45798033 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 1 0 0 4 0 1 37.695 37.695 3 0.024218 9404 TMT1-3 67.563 36.691 122.54 181.46 170.95 130.49 133.18 150.77 116 181 174 131 138 145 1 1 1 1 1 1 12194 8586 1700 8506 13565 17684 17684 262 1 ICMNEDPAK Unmodified 1076.4631 0.46306571 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 4.67 0.471 1 2 45.086 45.086 2;3 0.00066562 12046 TMT1-4 131.44 80.53 779.95 988.37 805.08 740.64 899.58 1293 736 991 833 737 935 1237 3 3 3 3 3 3 124410 8587 1700 8506 13566;13567;13568 17685;17686;17687 17687 3 ICNYVGPAK Unmodified 1020.5063 0.50625115 798 P19838-2;P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 7 0 1 47.45 47.45 3 0.025361 12417 TMT1-6 53.493 42.783 77.657 47.817 72.429 74.011 77.684 75.601 73 51 73 73 80 73 1 1 1 1 1 1 9900.8 8588 798 8507 13569 17688 17688 1 ICPVETLVEEAIQCAEK Unmodified 1987.9595 0.95946368 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 5 0 1 91.695 91.695 3 9.3264E-14 30319 TMT1-4 119.92 100.1 53.889 72.724 78.609 74.438 35.418 75.741 51 73 80 73 36 72 2 2 2 2 1 2 12638 8589 952 8508 13570 17689;17690 17690 2 ICQEVLPK Unmodified 985.52665 0.52665224 263 O75323 GBAS Protein NipSnap homolog 2 yes yes 0 0 0 0 0 6 0 1 50.412 50.412 2 0.0099874 14284 TMT1-5 99.802 79.473 91.841 138.36 136.44 92.19 128.67 119.98 87 138 138 94 131 116 1 1 1 1 1 1 14303 8590 263 8509 13571 17691 17691 1 ICSKPVVLPK Unmodified 1139.6737 0.67365083 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 9 0 1 49.05 49.05 3 0.0055434 11424 TMT1-8 68.069 23.431 99.463 145.71 111.72 102.01 149.95 126.84 94 145 116 102 152 123 1 1 1 1 1 1 8667.2 8591 1507 8510 13572 17692 17692 1 ICSLQEEQQQLR Unmodified 1530.746 0.7460405 2456 Q96T51;Q96T51-2 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 47.686 47.686 2 6.3447E-07 13397 TMT1-3 119.76 80.498 15.702 45.296 27.613 21.725 35.888 22.428 15 44 29 22 36 22 1 1 1 1 1 1 5013.6 8592 2456 8511 13573 17693 17693 1 ICSWNVDGLR Unmodified 1218.5815 0.58154136 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 7 0 1 57.898 57.898 2 7.8954E-21 16622 TMT1-6 200.56 133.07 153.64 196.56 160.58 169.41 188.96 240.85 145 197 167 167 196 231 1 1 1 1 1 1 28631 8593 914 8512 13574 17694 17694 1 ICYAINLGK Unmodified 1050.5532 0.55320134 2221 Q8NEU8-3;Q8NEU8;Q8NEU8-2 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 0 9 0 1 60.598 60.598 2 0.00022649 15940 TMT1-8 139.28 65.152 92.383 101.01 77.159 64.544 101.15 74.932 87 102 80 65 102 73 1 1 1 1 1 1 10190 8594 2221 8513 13575 17695 17695 1 ICYIFHETFGR Unmodified 1441.6813 0.6812554 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 62.87 62.87 3 0.00018415 16831 TMT1-8 91.701 61.643 46.679 57.887 40.524 75.776 84.932 75.394 44 58 44 73 87 73 1 1 1 1 1 1 10140 8595 68 8514 13576 17696 17696 1 IDAAQNWLADPNGGPEGEEQIR Unmodified 2379.1091 0.10911612 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.5 0.5 1 1 66.413 66.413 3 9.4809E-05 21968 TMT1-2 62.064 60.826 53.791 72.452 95.271 40.821 84.707 128.7 51 73 94 44 87 123 3 3 3 3 3 3 27932 8596 776 8515 13577;13578 17697;17698;17699 17697 3 IDAHLNK Unmodified 809.43955 0.43955179 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 6 0 1 38.172 38.172 3 0.0015543 9458 TMT1-5 77.741 18.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8597 2 8516 13579 17700 17700 1 IDAQAIEEFYGLTSDISK Unmodified 1998.9786 0.97860244 262 P62068-4;P62068-3;P62068;O75317 USP46;USP12 Ubiquitin carboxyl-terminal hydrolase 46;Ubiquitin carboxyl-terminal hydrolase 12 yes no 0 0 0 0 0 6 0 1 87.916 87.916 3 0.0012389 29013 TMT1-5 57.496 40.83 23.446 14.129 14.982 6.3407 22.193 15.357 22 15 15 7 22 15 1 1 1 1 1 1 1971.9 8598 262 8517 13580 17701 17701 1 IDASKNEEDEGHSNSSPR Unmodified 1970.8566 0.85658982 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 1 3 0.816 1 1 1 29.261 29.261 4 3.3634E-14 7017 TMT1-2 122.14 109.51 115.12 229.73 114.27 124.16 184.5 187.68 109 225 124 123 188 181 3 3 3 3 3 3 15702 8599 1748 8518 13581;13582;13583 17702;17703;17704 17703 3 IDASQTEFEK Unmodified 1166.5455 0.54553301 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 4 0 1 49.871 49.871 2 5.203E-06 14228 TMT1-3 122.69 56.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8600 336 8519 13584 17705 17705 1 IDATSASVLASR Unmodified 1189.6303 0.63026569 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 6 0 2 50.167 50.167 2;3 1.139E-07 14240 TMT1-5 120.55 77.058 321.97 651.49 337.1 359.91 425.81 460.09 305 638 364 355 438 443 2 2 2 2 2 2 68853 8601 686 8520 13585;13586 17706;17707 17707 2 IDDIVSGHK Unmodified 982.50836 0.50835964 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6 1 1 1 46.657 46.657 3 0.0021749 12209 TMT1-6 87.258 42.909 476.33 634.2 557.79 488.08 699.44 605.78 450 635 573 489 710 587 3 3 3 3 3 3 31802 8602 1178 8521 13587;13588 17708;17709;17710 17710 3 IDDVAALDK Unmodified 958.49713 0.49712625 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 4 0 1 56.606 56.606 2 0.0099141 16848 TMT1-3 89.047 52.346 115.91 121.84 72.932 128.7 74.107 106.62 109 123 80 123 80 102 1 1 1 1 1 1 13814 8603 515 8522 13589 17711 17711 1 IDDVAALDKK Unmodified 1086.5921 0.59208927 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 1 5.5 0.5 1 1 51.981 51.981 3 0.0017522 14832 TMT1-4 90.653 61.313 519.96 833.26 630.95 564.35 712.59 790.89 492 826 655 563 732 761 2 2 2 2 2 2 54887 8604 515 8523 13590;13591 17712;17713 17712 2 IDDVVNTR Unmodified 930.47706 0.47705951 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 3 0.816 1 1 1 43.81 43.81 2 0.002525 12767 TMT1-2 136.27 64.972 463.3 568.63 459.33 335 607.57 561.5 437 571 472 342 614 543 4 4 4 4 4 4 66216 8605 1233 8524 13592;13593;13594 17714;17715;17716;17717 17715 4 IDEAILITWTK Unmodified 1301.7231 0.72310344 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 7.5 0.5 1 1 79.623 79.623 2;3 6.3633E-06 25176 TMT1-7 127.51 79.809 154.21 265.24 187.2 207.86 210.41 234.91 146 262 197 204 218 226 4 4 4 4 4 4 33107 8606 787 8525 13595;13596 17718;17719;17720;17721 17720 4 IDEFEAL Unmodified 835.39635 0.39634958 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 2 0 1 74.494 74.494 2 0.026196 24266 TMT1-1 92.785 60.315 38.151 43.521 43.227 35.42 71.873 83.229 36 44 44 36 73 80 1 1 1 1 1 1 25376 8607 720 8526 13597 17722 17722 1 IDEFESM Unmodified 869.34768 0.34768482 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2 0 1 67.922 67.922 2 0.023777 21856 TMT1-1 94.669 41.203 108.26 130.59 89.106 94.748 142.66 135.58 102 131 94 94 145 131 1 1 1 1 1 1 51010 8608 894 8527 13598 17723 17723 1 IDEMPEAAVK Unmodified 1101.5376 0.53761086 1257 P51858 HDGF Hepatoma-derived growth factor yes yes 0 0 0 0 0 4 0 1 53.5 53.5 3 0.0015341 15611 TMT1-3 87.298 37.93 92.309 108.36 83.247 88.006 112.9 127.9 87 109 87 87 116 123 1 1 1 1 1 1 15757 8609 1257 8528 13599 17724 17724 1 IDEPLEGSEDR Unmodified 1258.5677 0.56772501 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 2 0 1 44.843 44.843 2 7.4238E-42 12830 TMT1-1 219.72 161.47 338.88 564.13 275.21 261.88 371.43 408.34 320 556 298 261 380 393 2 2 2 2 2 2 96787 8610 1409;1410 8529 13600 17725;17726 17725 2 IDESIHLQLR Unmodified 1222.667 0.66698555 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 5 0 1 51.658 51.658 3 0.0052063 14650 TMT1-4 72.365 32.492 53.737 103.6 77.844 50.04 56.558 52.752 51 102 80 51 58 51 1 1 1 1 1 1 6398.8 8611 2953 8530 13601 17727 17727 1 IDFDSVSSIMASSQ Unmodified 1485.6657 0.6657245 2842 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K yes yes 0 0 0 0 0 6 0 1 82.899 82.899 2 4.1232E-07 27084 TMT1-5 113.44 107.06 23.181 52.247 27.156 21.777 34.566 60.842 22 51 29 22 36 58 1 1 1 1 1 1 4554.1 8612 2842 8531 13602 17728 17728 1 IDFEKEPLGVNAK Unmodified 1458.7718 0.77184455 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 1 6 0 1 56.47 56.47 3 0.0069835 16694 TMT1-5 64.65 50.785 68.766 93.96 84.878 73.456 67.742 152.64 65 94 87 73 73 145 1 1 1 1 1 1 8245.6 8613 832 8532 13603 17729 17729 1 IDFHNPDR Unmodified 1012.4726 0.47264284 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 4 0 1 37.096 37.096 3 0.0012205 9162 TMT1-3 107.15 63.642 61.031 93.851 122.61 101.92 119.85 120.24 58 94 123 102 123 116 1 1 1 1 1 1 13193 8614 785 8533 13604 17730 17730 1 IDFVGELNDK Unmodified 1148.5714 0.57135383 1324 P55786;P55786-2;A6NEC2;A6NEC2-3 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 5 0 1 65.689 65.689 2 0.00080244 20115 TMT1-4 106.35 37.613 115.64 137.28 104.91 94.529 104.21 159.06 109 138 109 94 109 152 1 1 1 1 1 1 21112 8615 1324 8534 13605 17731 17731 1 IDFYFDENPYFENK Unmodified 1839.7992 0.79918151 1548 Q01105-3;Q01105-4;Q01105-2;Q01105;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 0 5.2 0.4 4 1 78.664 78.664 2;3;4 9.3018E-06 25221 TMT1-4 84.289 61.372 131.31 158.74 158.51 99.217 150.03 158.82 124 160 160 102 153 153 3 3 3 3 3 3 66279 8616 1548 8535 13606;13607;13608;13609;13610 17732;17733;17734;17735;17736 17734 5 IDGATQSSPAEPK Unmodified 1299.6307 0.63065962 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 4 0 1 40.023 40.023 2 1.2243E-10 10355 TMT1-3 141.13 101.58 38.243 43.776 27.578 22.013 20.703 37.785 36 44 29 22 22 36 1 1 1 1 1 1 5618.4 8617 1924 8536 13611 17737 17737 1 IDGPTGQK Unmodified 814.41848 0.418482 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 5 0 1 36.526 36.526 2 0.003928 8637 TMT1-4 128.69 63.649 176.48 268.39 227.43 196.83 204.14 279.86 167 267 234 196 213 268 1 1 1 1 1 1 60092 8618 1797 8537 13612 17738 17738 1 IDGQQTIIACIESHQFQAK Unmodified 2186.079 0.079001963 1143 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 0 6 0 1 65.051 65.051 3 1.6414E-15 20086 TMT1-5 103.17 87.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8619 1143 8538 13613 17739 17739 1 IDGSANLK Unmodified 816.43413 0.43413207 1300 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 0 6 0 1 43.036 43.036 2 0.04202 11396 TMT1-5 76.827 1.4472 122.3 222.91 175.12 151.2 239.08 237.29 116 220 181 152 243 229 1 1 1 1 1 1 12206 8620 1300 8539 13614 17740 17740 1 IDHILDAL Unmodified 908.49673 0.49673232 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 5 0 1 74.366 74.366 2 0.010493 23614 TMT1-4 99.139 78.279 61.54 72.601 55.123 66.592 62.063 83.509 58 73 58 65 65 80 1 1 1 1 1 1 78870 8621 478 8540 13615 17741 17741 1 IDHYLGK Unmodified 844.4443 0.44430282 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 6 0 1 45.443 45.443 3 0.014572 12317 TMT1-5 74.415 40.029 292.69 479.74 354.16 405.91 366.93 407.4 277 475 372 397 382 392 1 1 1 1 1 1 49121 8622 655 8541 13616 17742 17742 1 IDIDPEETVK Unmodified 1157.5816 0.58158416 1302 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 0 0 2.33 0.471 2 1 57.777 57.777 2;3 0.00014602 18223 TMT1-2 107.83 53.223 456.21 533.62 417.97 339.74 428.66 586.86 430 537 432 341 444 562 4 4 4 4 4 4 72714 8623 1302 8542 13617;13618;13619 17743;17744;17745;17746 17746 4 IDILTELR Unmodified 971.56515 0.56514624 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 6 0 1 70.078 70.078 2 0.0035185 22044 TMT1-5 131.06 47.448 320.21 370.81 331.29 285.65 324.63 338.25 302 374 340 285 334 326 2 2 2 2 2 2 49595 8624 39 8543 13620 17747;17748 17747 2 IDIPPGAVLENK Unmodified 1264.7027 0.70270235 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6 0 1 62.675 62.675 2 0.0005147 19147 TMT1-5 74.76 29.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8625 1910 8544 13621 17749 17749 1 IDKLMIEMDGTENK Unmodified 1635.7848 0.78479378 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 1 6 0 2 64.78 64.78 3;4 5.0616E-06 19948 TMT1-5 102.99 63.988 563.07 811.25 436.75 528.16 462.99 888.62 531 805 473 515 495 846 4 4 4 4 4 4 40259 8626 514 8545 13622;13623 17750;17751;17752;17753 17751 4 IDKPILK Unmodified 825.53239 0.53238955 1460 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 1 8 0 1 47.561 47.561 3 0.028736 12603 TMT1-7 72.547 5.4225 736.43 964.63 745.92 721.17 1076.2 834.88 695 965 776 719 1088 812 1 1 1 1 1 1 75455 8627 1460 8546 13624 17754 17754 1 IDKTDYMVGSYGPR Unmodified 1600.7555 0.75554256 1268 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 0 0 1 6.5 0.5 1 1 51.945 51.945 3 4.2333E-07 14281 TMT1-6 106.52 96.994 423.52 594.87 450.07 390.57 587.99 752.87 400 593 467 392 604 722 3 3 3 3 3 3 74068 8628 1268 8547 13625;13626 17755;17756;17757 17756 3 IDKWDGSAVK Unmodified 1117.5768 0.57677356 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 1 7 0 1 49.37 49.37 3 0.004352 13264 TMT1-6 80.623 42.67 398.34 782.04 557.04 557.6 608.17 703.26 378 769 583 551 629 676 1 1 1 1 1 1 24667 8629 1808 8548 13627 17758 17758 1 IDKYTEVLK Unmodified 1107.6176 0.61757574 1071 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 1 7 0 1 54.392 54.392 3 0.015314 15236 TMT1-6 68.355 20.753 216.1 213.43 108.8 233.35 207.47 164.64 203 216 123 223 214 160 1 1 1 1 1 1 11778 8630 1071 8549 13628 17759 17759 1 IDLAGSSLSGILDK Unmodified 1387.7559 0.75586013 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 7 0 1 75.91 75.91 3 0.026915 23653 TMT1-6 46.408 39.038 46.675 57.875 41.238 59.753 62.927 67.494 44 58 44 58 65 65 1 1 1 1 1 1 8902 8631 2369 8550 13629 17760 17760 1 IDLAGSSLSGILDKDLSDR Unmodified 1974.0269 0.026949617 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 1 6 0 1 73.988 73.988 3 5.5817E-18 23616 TMT1-5 128.1 102.93 61.114 141.57 68.294 42.415 85.403 106.29 58 138 73 44 87 102 1 1 1 1 1 1 15069 8632 2369 8551 13630 17761 17761 1 IDLAVGDVVK Unmodified 1027.5914 0.59136099 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5.5 0.5 1 1 64.616 64.616 2 2.9746E-05 19697 TMT1-4 150.08 86.035 1724.5 1753.6 2456.9 1920 2116.2 2604.6 1629 1796 2455 1927 2193 2500 4 4 4 4 4 4 486500 8633 2112 8552 13631;13632 17762;17763;17764;17765 17762 4 IDLENTLEQEQEALVNR Unmodified 2013.0015 0.0014631481 1885 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 0 0 3 0 1 73.463 73.463 3 0.00097633 24454 TMT1-2 48.907 31.626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8634 1885 8553 13633 17766 17766 1 IDLGERPVVQR Unmodified 1280.7201 0.72008375 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 1 5 0 1 42.745 42.745 3 7.2897E-06 11148 TMT1-4 119.34 81.991 76.613 162.56 150.6 83.57 135.33 150.71 73 160 152 87 138 145 1 1 1 1 1 1 11380 8635 2245 8554 13634 17767 17767 1 IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR Unmodified 3234.6786 0.67855987 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 9 0 2 91.975 91.975 4;5 1.9137E-07 28072 TMT1-8 59.228 50.503 62.765 50.286 48.424 52.594 72.109 53.374 59 52 50 52 73 52 3 3 3 3 3 3 9007.2 8636 2943 8555 13635;13636 17768;17769;17770 17768 3 IDLLDRK Unmodified 871.51272 0.51271674 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 7 0 1 50.786 50.786 3 0.033399 13820 TMT1-6 66.682 10.671 115.5 120.7 142.82 140.25 109.95 143.97 109 123 145 138 116 138 1 1 1 1 1 1 7631.9 8637 1297 8556 13637 17771 17771 1 IDLLSSLIYVSQN Unmodified 1463.7872 0.78716026 1716 Q13546;Q13546-2 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 yes no 0 0 0 0 0 8.5 0.5 1 1 102.61 102.61 2;3 0.002078 32104 TMT1-8 77.192 55.106 39.534 22.209 22.569 22.728 26.235 28.033 37 22 22 22 27 27 2 2 2 2 3 3 3084.6 8638 1716 8557 13638;13639 17772;17773;17774 17774 3 IDLPEYQGEPDEISIQK Unmodified 1972.963 0.96295238 2571 Q9BY32;Q9BY32-2 ITPA Inosine triphosphate pyrophosphatase yes no 0 0 0 0 0 4 0 1 67.554 67.554 3 8.6091E-14 21171 TMT1-3 120.66 101.83 68.85 117.94 50.546 107.46 53.661 60.297 65 116 58 102 58 58 1 1 1 1 1 1 16847 8639 2571 8558 13640 17775 17775 1 IDLRPVLGEGVPILASFLR Unmodified 2064.2095 0.20954585 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 1 9 0 1 92.095 92.095 3 6.4943E-10 28244 TMT1-8 88.282 65.275 100.65 130.84 104.91 104.76 83.034 122.35 95 131 109 103 88 117 3 3 3 3 3 3 22431 8640 2116 8559 13641 17776;17777;17778 17778 3 IDMEHSASALR Unmodified 1228.587 0.58702067 3083 yes yes 0 0 0 0 0 2.5 0.5 1 1 55.038 55.038 2 0.0026197 16882 TMT1-1 91.853 33.567 2038 2935.4 2676.5 1726.1 2546.7 2969.7 1928 2930 2717 1769 2608 2854 3 3 3 3 3 3 882460 + 8641 3083 8560 13642;13643 17779;17780;17781 17779 3 IDMNLTDLLGELQR Unmodified 1629.8396 0.83960654 1857;1858 Q15436;Q15436-2;Q15437 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B no no 0 0 0 0 0 7 0 1 89.628 89.628 3 0.00014078 28937 TMT1-6 82.651 62.884 15.81 21.851 29.347 14.378 14.238 23.046 15 22 29 15 15 22 1 1 1 1 1 1 4717.6 8642 1857;1858 8561 13644 17782 17782 1 IDNSQVESGSLEDDWDFLPPK Unmodified 2390.0914 0.091400367 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 4.33 0.471 2 1 77.706 77.706 3;4 1.0493E-13 24880 TMT1-4 104.63 89.125 254.14 373.41 251.04 196.58 200.96 311.93 240 371 262 197 211 298 5 5 5 5 5 5 78692 8643 918 8562 13645;13646;13647 17783;17784;17785;17786;17787 17787 5 IDNSQVESGSLEDDWDFLPPKK Unmodified 2518.1864 0.18636339 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 5.25 0.433 3 1 70.506 70.506 4;5 2.2592E-37 21785 TMT1-4 152.81 145.86 1592 2088.7 1719.4 1448.3 1696.3 2183.8 1503 2091 1772 1448 1757 2094 10 10 10 10 10 10 240600 8644 918 8563 13648;13649;13650;13651 17788;17789;17790;17791;17792;17793;17794;17795;17796;17797 17789 10 IDPFGGDPFK Unmodified 1091.5288 0.52876073 1098 P42566;P42566-2 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 0 0 0 0 6 0 1 69.537 69.537 2 0.0048945 21869 TMT1-5 91.658 51.949 161.61 117.47 150.06 146.92 139.2 166.59 152 123 152 145 145 160 1 1 1 1 1 1 16425 8645 1098 8564 13652 17798 17798 1 IDPLAPLDK Unmodified 980.55425 0.5542472 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 5.5 0.5 1 1 68.003 68.003 2 0.017212 21265 TMT1-5 79.148 44.048 247.77 235.69 177.33 240.18 208.69 211.51 233 240 188 233 217 204 2 2 2 2 2 2 44079 8646 660 8565 13653;13654 17799;17800 17800 2 IDPNPADSQK Unmodified 1083.5197 0.51965261 294 O75663 TIPRL TIP41-like protein yes yes 0 0 0 0 0 4 0 1 42.504 42.504 3 0.0071776 11275 TMT1-3 67.153 48.993 115.54 129.44 128.9 100.81 158.89 111.66 109 131 131 102 160 109 1 1 1 1 1 1 16748 8647 294 8566 13655 17801 17801 1 IDPSKPESILK Unmodified 1225.6918 0.69180331 1791 Q14696 MESDC2 LDLR chaperone MESD yes yes 0 0 0 0 1 7 0 1 54.306 54.306 3 0.0030153 15210 TMT1-6 79.633 33.717 382.42 522.08 387.31 298.92 255.38 478.81 361 521 401 299 273 456 1 1 1 1 1 1 31579 8648 1791 8567 13656 17802 17802 1 IDPSTLQMWANILK Unmodified 1628.8596 0.8596137 140 O15294-4;O15294-2;O15294-3;O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 0 9 0 1 92.452 92.452 3 0.0060071 28317 TMT1-8 52.265 28.661 23.384 29.067 12.678 37.941 34.629 37.388 22 29 15 36 36 36 1 1 1 1 1 1 2199.4 8649 140 8568 13657 17803 17803 1 IDPYVFDR Unmodified 1023.5025 0.50254598 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 5 0 1 58.561 58.561 2 0.030261 17328 TMT1-4 81.594 36.282 107.75 230.64 89.624 142.74 146.21 181.31 102 225 102 138 152 174 1 1 1 1 1 1 16155 8650 1142 8569 13658 17804 17804 1 IDQLEGDHQLIQEALIFDNK Unmodified 2338.1805 0.18049015 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.71 1.83 2 2 2 1 76.188 76.188 3;4 1.0913E-24 24290 TMT1-4 141.31 108 2921.7 3459.5 3209.9 2499.9 3067.3 3221.3 2757 3487 3275 2515 3148 3104 14 14 14 14 14 14 757580 8651 672 8570 13659;13660;13661;13662;13663;13664;13665 17805;17806;17807;17808;17809;17810;17811;17812;17813;17814;17815;17816;17817;17818 17813 14 IDQWLEQYTQAIETAGR Unmodified 2020.9854 0.98541915 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 7.33 0.471 2 1 88.779 88.779 2;3 4.8271E-10 28586 TMT1-6 115.91 108.54 123.85 198.26 115.7 133.52 147.13 197.28 117 196 124 131 153 189 4 4 4 4 4 4 85575 8652 1000 8571 13666;13667;13668 17819;17820;17821;17822 17821 4 IDQYQGADAVGLEEK Unmodified 1634.7788 0.77878042 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 0 3 0.816 1 1 1 56.778 56.778 2;3 3.6032E-17 16846 TMT1-3 143.46 112.11 270.51 318.03 251.94 249.23 304.31 338.83 255 320 262 247 313 326 3 3 3 3 3 3 41478 8653 171 8572 13669;13670;13671 17823;17824;17825;17826 17826 4 IDRLDGAHAPELTK Unmodified 1534.8104 0.81035532 321 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 1 5 0 1 45.836 45.836 4 0.00066565 12365 TMT1-4 75.764 55.383 153.88 141.12 166.7 106.55 140.87 171.87 145 145 167 109 145 165 1 1 1 1 1 1 11359 8654 321 8573 13672 17827 17827 1 IDRTDAISEEK Unmodified 1275.6307 0.63065962 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 1 2.5 0.5 1 1 39.894 39.894 3 0.00064221 11159 TMT1-2 95.98 72.375 261.19 339.23 357.71 203.31 260.54 334.75 247 341 359 210 269 321 2 2 2 2 2 2 34039 8655 2721 8574 13673;13674 17828;17829 17829 2 IDSDISGTLK Unmodified 1047.5448 0.54480473 2964 Q9Y2B0 CNPY2 Protein canopy homolog 2 yes yes 0 0 0 0 0 5 0 1 54.34 54.34 3 0.00013314 15714 TMT1-4 82.029 46.364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8656 2964 8575 13675 17830 17830 1 IDSEGGVSANHTSR Unmodified 1428.6593 0.65933399 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 4 1 1 1 27.822 27.822 3 1.948E-10 5272 TMT1-4 122.66 99.288 38.042 66.961 41.756 36.868 57.676 37.796 36 66 44 37 58 37 2 2 2 2 2 2 9324.9 8657 1250 8576 13676;13677 17831;17832 17832 2 IDSFWDVVR Unmodified 1135.5662 0.56620887 3084 yes yes 0 0 0 0 0 4 0 1 50.717 50.717 2 0.0011444 14560 TMT1-3 82.716 36.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8658 3084 8577 13678 17833 17833 1 IDSGELDPER Unmodified 1129.5251 0.52513192 1369 P61018;P61018-2 RAB4B Ras-related protein Rab-4B yes no 0 0 0 0 0 2 0 1 45.914 45.914 2 0.019565 13269 TMT1-1 76.1 43.629 84.907 92.986 78.026 56.721 107.52 113.13 80 94 80 58 109 109 1 1 1 1 1 1 12314 8659 1369 8578 13679 17834 17834 1 IDSIEDRYPR Unmodified 1262.6255 0.62551466 1678 Q13158 FADD FAS-associated death domain protein yes yes 0 0 0 0 1 3 0 1 42.994 42.994 3 0.002683 12500 TMT1-2 87.568 45.692 100.04 77.171 71.98 42.018 94.86 75.111 94 80 73 44 95 73 1 1 1 1 1 1 7788.3 8660 1678 8579 13680 17835 17835 1 IDSLLENDR Unmodified 1073.5353 0.53530267 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 4 0 1 57.274 57.274 2 1.3789E-06 17178 TMT1-3 166.07 81.568 166.8 316.64 371.11 235 334.87 320.9 159 314 371 241 341 310 2 2 2 2 2 2 54759 8661 639 8580 13681 17836;17837 17837 2 IDSLSAQLSQLQK Unmodified 1429.7777 0.77765821 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 8 0 1 67.981 67.981 3 1.3242E-16 20664 TMT1-7 169.98 134.31 108.29 145.79 71.16 137.09 98.258 275.42 102 145 80 131 109 261 1 1 1 1 1 1 30107 8662 429 8581 13682 17838 17838 1 IDTIEIITDR Unmodified 1187.6398 0.63976774 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 3.5 0.5 1 1 65.704 65.704 2 1.5717E-38 20356 TMT1-3 218.58 147.2 367.06 792.38 574.36 668.38 707.24 624.75 349 777 604 655 726 605 3 3 3 3 3 3 505280 8663 848 8582 13683;13684 17839;17840;17841 17840 3 IDTLGIYGK Unmodified 978.5386 0.53859714 52 O00214;O00214-2 LGALS8 Galectin-8 yes no 0 0 0 0 0 7 0 1 61.444 61.444 2 0.019701 18046 TMT1-6 78.149 47.585 108.17 121.7 112.08 125.4 125.27 174.45 102 123 116 123 131 167 1 1 1 1 1 1 8755.1 8664 52 8583 13685 17842 17842 1 IDTYLNAALDLLGGEDGLCQYK Unmodified 2441.1784 0.17844124 2588 Q9BZM1 PLA2G12A Group XIIA secretory phospholipase A2 yes yes 0 0 0 0 0 7 0 1 101.54 101.54 3 0.0014977 33010 TMT1-6 50.132 37.469 0 7.386 3.7058 4.0195 6.9978 4.0643 0 7 4 4 7 4 0 1 1 1 1 1 805.07 8665 2588 8584 13686 17843 17843 1 IDVDAPDIDIHGPDAK Unmodified 1689.821 0.82097959 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3.67 0.471 1 2 57.982 57.982 3;4 3.6923E-16 18444 TMT1-2 137.19 100.42 368.4 577.9 350.97 312.53 402.62 437.3 348 572 371 312 413 421 3 3 3 3 3 3 61430 8666 1632 8585 13687;13688;13689 17844;17845;17846 17844 3 IDVDTNFPECVVDAGK Unmodified 1777.8193 0.81926503 1628 Q08AF3;Q08AF3-2 SLFN5 Schlafen family member 5 yes no 0 0 0 0 0 4 0 1 69.948 69.948 3 0.027309 22233 TMT1-3 41.86 15.425 23.216 44.789 27.593 22.012 20.703 37.785 22 44 29 22 22 36 1 1 1 1 1 1 5451.7 8667 1628 8586 13690 17847 17847 1 IDVIDWLVFDPAQR Unmodified 1685.8777 0.8777066 1343 P57740-3;P57740-2;P57740 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 0 0 0 7 0 1 95.287 95.287 3 0.0028262 31002 TMT1-6 64.244 49.368 30.557 51.357 50.656 28.97 42.575 61.679 29 51 51 30 44 59 2 2 2 2 2 2 3578.3 8668 1343 8587 13691 17848;17849 17848 2 IDVLDPEELK Unmodified 1169.618 0.61796967 2550 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 0 4 0 1 69.002 69.002 2 0.036664 21741 TMT1-3 67.334 20.136 61.694 56.839 42.637 28.063 58.118 36.718 58 58 44 29 58 36 1 1 1 1 1 1 4056.6 8669 2550 8588 13692 17850 17850 1 IDVSIEAASGGK Unmodified 1145.5928 0.59281755 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 55.875 55.875 3 0.0015328 16341 TMT1-4 75.849 49.177 115.41 160.38 124.59 155.96 146.41 157.85 109 160 131 152 152 152 1 1 1 1 1 1 15903 8670 600 8589 13693 17851 17851 1 IDVSVAAGHTDR Unmodified 1239.6208 0.62076364 1943 Q4V328-4;Q4V328 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 4 0 1 38.908 38.908 3 0.00031062 9866 TMT1-3 89.231 62.716 99.789 107.76 89.093 126.75 126.53 136.04 94 109 94 123 131 131 1 1 1 1 1 1 16615 8671 1943 8590 13694 17852 17852 1 IDVTAPDVSIEEPEGK Unmodified 1697.836 0.83596095 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 0.816 1 1 1 62.382 62.382 3 3.5331E-20 19917 TMT1-1 125.28 108.06 208.48 260.25 266.8 170.46 203.24 250.04 197 262 269 174 210 240 3 3 3 3 3 3 37801 8672 1632 8591 13695;13696;13697 17853;17854;17855;17856 17853 4 IDVVVNNAGILR Unmodified 1281.7405 0.74048484 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 8 0 1 65.395 65.395 2 4.7427E-08 19634 TMT1-7 130.01 94.568 122.84 174.76 125.45 92.151 165.56 142.38 116 174 130 94 167 138 2 2 2 2 2 2 17039 8673 1250 8592 13698 17857;17858 17857 2 IDVYGFSALWK Unmodified 1297.6707 0.67067394 2848 Q9UBV8 PEF1 Peflin yes yes 0 0 0 0 0 9 0 1 81.815 81.815 3 5.0368E-05 24330 TMT1-8 97.813 69.07 69.739 124.91 75.423 73.873 75.565 137.49 66 123 80 73 80 131 2 2 2 2 2 2 11607 8674 2848 8593 13699 17859;17860 17860 2 IDYIAGLDSR Unmodified 1121.5717 0.57168818 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 5 0 1 60.664 60.664 2 2.5948E-09 18133 TMT1-4 170.69 102.31 299.16 499.88 332.64 302.6 291.16 498.04 283 494 349 300 308 475 2 2 2 2 2 2 86147 8675 541 8594 13700 17861;17862 17861 2 IEAACFATIK Unmodified 1122.5743 0.57433072 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0 1 59.55 59.55 3 0.035493 17359 TMT1-6 48.741 18.931 46.371 80.776 72.83 24.153 170.3 95.344 44 80 73 29 167 94 1 1 1 1 1 1 12997 8676 1213 8595 13701 17863 17863 1 IEADLEHLK Unmodified 1066.5659 0.56587452 2803 Q9NZN5-2;Q9NZN5 ARHGEF12 Rho guanine nucleotide exchange factor 12 yes no 0 0 0 0 0 4 0 1 54.363 54.363 3 0.0033375 16002 TMT1-3 79.148 65.339 108.51 83.813 86.027 56.816 77.155 113.99 102 87 87 58 80 109 1 1 1 1 1 1 6664.3 8677 2803 8596 13702 17864 17864 1 IEADSESQEDIIR Unmodified 1503.7053 0.70528113 1329 P55957;P55957-2 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 2 0 1 48.702 48.702 2 2.5992E-47 14369 TMT1-1 226.33 173.75 46.665 50.294 49.276 59.555 47.985 76.449 44 51 51 58 51 73 1 1 1 1 1 1 14606 8678 1329 8597 13703 17865 17865 1 IEAENEK Unmodified 831.39741 0.39741221 1605 Q06787-11;Q06787-10;Q06787-8;Q06787-6;Q06787-2;Q06787-4;Q06787-5;Q06787-9;Q06787-7;Q06787-3;Q06787 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 0 4 0 1 47.29 47.29 3 0.037819 13191 TMT1-3 54.549 6.0457 37.503 134.54 75.015 73.713 85.32 66.855 36 130 80 73 87 65 1 1 1 1 1 1 22619 8679 1605 8598 13704 17866 17866 1 IEALQADNDFTNER Unmodified 1634.7536 0.7536283 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-4;Q14BN4-7;Q14BN4-6 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 3 0 1 55.835 55.835 3 8.4466E-06 17580 TMT1-2 99.927 83.394 30.652 51.622 34.422 28.691 50.76 36.928 29 51 36 29 51 36 1 1 1 1 1 1 9652.4 8680 1806 8599 13705 17867 17867 1 IEANEALVK Unmodified 985.54441 0.5444108 950 P30049 ATP5D ATP synthase subunit delta, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 49.989 49.989 2 1.0965E-06 14042 TMT1-4 166.33 90.471 451.53 726.19 501.02 451.2 631.94 701.52 427 719 524 451 647 675 2 2 2 2 2 2 99653 8681 950 8600 13706;13707 17868;17869 17869 2 IECDDKGDGSCDVR Unmodified 1624.6457 0.64573411 831;1771 P21333-2;P21333;Q14315-2;Q14315 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 1 2.5 0.5 2 2 36.209 36.209 3 3.7432E-07 9635 TMT1-2 107.74 98.365 1850.7 1989.8 2137.4 1570.3 2018.8 2071.2 1746 2021 2159 1588 2067 1997 6 6 6 6 6 6 502780 8682 831;1771 8601 13708;13709;13710;13711 17870;17871;17872;17873;17874;17875 17874 6 IECESPNR Unmodified 1003.4393 0.4392938 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 2 0 1 30.369 30.369 2 0.030325 7129 TMT1-1 81.548 58.119 38.249 43.793 26.521 45.709 42.648 37.159 36 44 29 44 44 36 1 1 1 1 1 1 3519.1 8683 2968 8602 13712 17876 17876 1 IECVSAETTEDCIAK Unmodified 1724.7597 0.75970124 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 2.5 0.5 1 1 53.855 53.855 3 1.3081E-10 16520 TMT1-1 120.53 110.36 139.13 174.19 93.885 95.29 98.677 105.92 131 174 101 94 102 102 2 2 2 2 2 2 20953 8684 451 8603 13713;13714 17877;17878 17877 2 IEDANLIPPVPDDK Unmodified 1534.7879 0.78788854 554 P07996 THBS1 Thrombospondin-1 yes yes 0 0 0 0 0 4.4 0.49 3 2 65.45 65.45 2;3;4 0.00028546 20270 TMT1-3 89.301 61.132 635.82 597.36 654.13 494.46 694.13 660.3 599 612 661 500 707 638 7 7 7 7 7 7 141800 8685 554 8604 13715;13716;13717;13718;13719 17879;17880;17881;17882;17883;17884;17885 17882 7 IEDANLIPPVPDDKFQDLVDAVR Unmodified 2578.3279 0.32788266 554 P07996 THBS1 Thrombospondin-1 yes yes 0 0 0 0 1 5.56 1.77 1 2 3 3 81.358 81.358 3;4;5 2.1309E-18 26164 TMT1-4 115.66 102.06 2627.3 3438.1 2940.1 2885.3 3654.9 3596.9 2481 3444 3039 2863 3739 3472 13 13 13 13 13 13 1734300 8686 554 8605 13720;13721;13722;13723;13724;13725;13726;13727;13728 17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898 17888 13 IEDDMDGGDWSFCDGR Unmodified 1873.6883 0.68832721 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 2 0 1 65.447 65.447 3 1.2351E-08 20916 TMT1-1 108.14 104.8 15.714 52.883 19.202 30.299 13.506 23.067 15 51 22 29 15 22 1 1 1 1 1 1 4854.9 8687 856 8606 13729 17899 17899 1 IEDFGLHFVR Unmodified 1231.635 0.63495714 2530 Q9BT40-2;Q9BT40 INPP5K Inositol polyphosphate 5-phosphatase K yes no 0 0 0 0 0 7 0 1 61.613 61.613 3 9.4692E-05 18084 TMT1-6 115.78 87.383 69.204 48.769 49.591 52.001 41.809 53.173 65 51 51 51 44 51 1 1 1 1 1 1 9683.5 8688 2530 8607 13730 17900 17900 1 IEDFLER Unmodified 920.46035 0.46034682 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 0 4 0 1 61.174 61.174 2 0.022671 18729 TMT1-3 95.531 41.474 268.39 504.06 270.83 254.86 352.18 338.53 254 495 290 254 359 327 2 2 2 2 2 2 68528 8689 1135 8608 13731 17901;17902 17902 2 IEDGEDLKHDFER Unmodified 1601.7322 0.73216458 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 1 2.5 0.5 1 1 50.336 50.336 4 0.00029945 15260 TMT1-2 86.291 78.487 184.6 169.18 209.8 166.57 183.56 188.77 174 174 211 167 189 182 2 2 2 2 2 2 8442.4 8690 1707 8609 13732;13733 17903;17904 17904 2 IEDGNDFGVAIQEK Unmodified 1533.7311 0.73110195 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 4 0 1 60.622 60.622 3 2.6426E-10 18428 TMT1-3 120.21 97.601 383.89 576.2 453.96 478.64 484.27 518.12 363 573 473 471 501 499 3 3 3 3 3 3 57425 8691 2907 8610 13734 17905;17906;17907 17906 3 IEDGNNFGVAVQEK Unmodified 1518.7314 0.7314363 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 4.5 0.5 1 1 55.147 55.147 3 2.4443E-19 16294 TMT1-3 164.88 140.63 490.76 703.82 598.93 537.99 704.66 721.83 464 702 617 537 721 696 4 4 4 4 4 4 124560 8692 1603 8611 13735;13736 17908;17909;17910;17911 17908 4 IEDGTLASK Unmodified 932.48148 0.48147619 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 4 0 1 45.655 45.655 2 0.00032122 12560 TMT1-3 99.815 10.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8693 463 8612 13737 17912 17912 1 IEDLEEGQQVIR Unmodified 1427.7256 0.72562264 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 2 0 1 56.143 56.143 2 0.0074177 17331 TMT1-1 76.255 33.656 54.29 33.907 44.027 28.571 26.668 68.529 51 36 44 29 29 65 1 1 1 1 1 1 5616.2 8694 1744 8613 13738 17913 17913 1 IEDLPTMVTLGNSFLHK Unmodified 1913.9921 0.99208444 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8.33 0.471 2 1 78.861 78.861 3;4 1.108E-09 25014 TMT1-7 104.44 99.578 152.87 278.61 220.34 126.34 197.43 265.13 145 275 225 131 203 254 4 4 4 4 4 4 20380 8695 471 8614 13739;13740;13741 17914;17915;17916;17917 17915 4 IEDLSQQAQLAAAEK Unmodified 1613.8261 0.82606496 36 Q13765;E9PAV3-2;E9PAV3 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 0 5 0 2 60.986 60.986 3;4 4.4025E-08 18309 TMT1-4 112.17 69.856 269.04 386.06 261.67 279.4 354.98 345.91 254 384 276 276 363 334 3 3 3 3 3 3 66245 8696 36 8615 13742;13743 17918;17919;17920 17920 3 IEDPPRR Unmodified 881.47191 0.47191456 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 1 3 0 1 25.31 25.31 3 0.04242 5487 TMT1-2 62.715 16.052 46.667 57.853 42.632 28.512 34.256 60.85 44 58 44 29 36 58 1 1 1 1 1 1 2642.5 8697 1380 8616 13744 17921 17921 1 IEDVLPFFPDFVTIDHFK Unmodified 2178.1037 0.10374338 2821 Q9P253 VPS18 Vacuolar protein sorting-associated protein 18 homolog yes yes 0 0 0 0 0 8 0 1 92.099 92.099 4 0.0203 29862 TMT1-7 39.348 21.648 15.892 14.523 21.857 22.349 20.944 30.316 15 15 22 22 22 29 1 1 1 1 1 1 2008.9 8698 2821 8617 13745 17922 17922 1 IEDVTPIPSDSTR Unmodified 1428.7096 0.70963822 1423 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 0 3 0.816 1 1 1 53.873 53.873 2;3 5.4944E-28 16578 TMT1-1 168.69 144.73 191.27 398.56 336.91 355.34 321.14 315.97 182 392 349 349 333 305 4 4 4 4 4 4 44585 8699 1423 8618 13746;13747;13748 17923;17924;17925;17926;17927 17923 5 IEEACEIYAR Unmodified 1252.5758 0.57578728 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 3 0 1 49.116 49.116 2 5.9541E-05 14860 TMT1-2 144.77 103.32 153.49 210.19 173.56 199.65 224.93 249.42 145 210 181 196 232 240 2 2 2 2 2 2 41101 8700 1304 8619 13749 17928;17929 17928 2 IEEEEQEPEPPEPFEYIDD Unmodified 2332.9747 0.97469885 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 2 0 1 78.558 78.558 3 0.005004 25682 TMT1-1 49.224 46.395 14.83 22.184 13.425 7.1238 13.525 23.066 14 22 14 7 14 22 2 2 2 1 2 2 9851.6 8701 2465 8620 13750 17930;17931 17930 2 IEEELAALQK Unmodified 1142.6183 0.61830402 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 5 0 1 65.622 65.622 3 0.0023338 20102 TMT1-4 81.338 37.825 61.468 87.511 54.544 59.521 33.087 53.422 58 87 58 58 36 51 1 1 1 1 1 1 10700 8702 2630 8621 13751 17932 17932 1 IEEELGDEAR Unmodified 1159.5357 0.5356966 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 2 0 1 46.644 46.644 2 1.6767E-20 13635 TMT1-1 195.48 115.57 161.63 263.41 203.17 166.83 190.88 188.57 153 261 210 167 196 182 2 2 2 2 2 2 48111 8703 581 8622 13752 17933;17934 17934 2 IEEELGSK Unmodified 903.45493 0.45492709 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 2.5 1.12 1 1 1 1 48.558 48.558 2 2.4841E-05 14750 TMT1-2 163.99 86.703 7752.7 13357 9906.4 7810.3 10930 14080 7343 13201 10254 7874 11255 13501 8 8 8 8 8 8 1436200 8704 514 8623 13753;13754;13755;13756 17935;17936;17937;17938;17939;17940;17941;17942 17940 8 IEEFLEAVLCPPR Unmodified 1571.8018 0.80176447 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 7.67 0.471 1 2 94.816 94.816 2;3 5.7934E-11 30941 TMT1-7 134.49 109.1 45.453 128.47 87.37 36.842 96.38 68.253 43 125 88 36 96 66 4 8 6 3 7 5 12619 8705 59 8624 13757;13758;13759 17943;17944;17945;17946;17947;17948;17949;17950 17948 8 IEEFLEAVLCPPRYPK Unmodified 1960.0128 0.012819878 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 9 0 1 86.259 86.259 4 4.9785E-06 26074 TMT1-8 91.207 64.399 30.682 35.517 42.981 52.553 33.408 53.413 29 36 44 51 36 51 1 1 1 1 1 1 3229.5 8706 59 8625 13760 17951 17951 1 IEEFLSSFEEK Unmodified 1356.6449 0.6449127 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 6 0 1 80.852 80.852 3 0.0024837 26277 TMT1-5 76.655 6.6759 30.747 51.887 18.155 53.442 64.793 21.603 29 51 22 51 65 22 1 1 1 1 1 1 3334.2 8707 208 8626 13761 17952 17952 1 IEEFVYEK Unmodified 1055.5175 0.51752734 2984 Q9Y371;Q9Y371-2 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 0 5 0 1 61.182 61.182 2 0.024598 18345 TMT1-4 85.67 35.544 130 173.26 186.27 136.85 153.5 220.55 123 174 188 138 160 211 2 2 2 2 2 2 16350 8708 2984 8627 13762 17953;17954 17953 2 IEEGLDQINK Unmodified 1157.5928 0.59281755 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 4 0 2 54.372 54.372 2;3 9.6753E-07 15968 TMT1-3 163.94 89.812 574.43 1227.8 1060.5 949.2 914.35 1314.9 547 1207 1090 942 959 1258 3 3 3 3 3 3 229510 8709 45 8628 13763;13764 17955;17956;17957 17955 3 IEELLPGSSIDAETR Unmodified 1628.8257 0.82573061 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 4 0 1 66.358 66.358 3 1.0915E-07 20742 TMT1-3 107.61 95.689 68.451 140.57 98.375 72.059 99.248 89.91 65 138 102 73 101 87 2 2 2 2 2 2 19230 8710 1222 8629 13765 17958;17959 17959 2 IEELQLIVNDK Unmodified 1312.7238 0.72383172 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 5.5 0.5 1 1 72.257 72.257 3 1.251E-05 22759 TMT1-4 91.961 49.152 30.415 74.706 54.751 75.632 47.539 67.933 29 73 58 73 51 65 1 1 1 1 1 1 6881.2 8711 1416 8630 13766;13767 17960;17961 17960 2 IEEQLTLEK Unmodified 1101.5918 0.59175492 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 4.5 0.5 1 1 56.341 56.341 2 8.8914E-08 16773 TMT1-3 137.98 24.354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8712 967 8631 13768;13769 17962;17963 17962 2 IEEVLSGVLDTELR Unmodified 1571.8407 0.8406524 780 P18583-8;P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9 SON Protein SON yes no 0 0 0 0 0 5 0 1 85.069 85.069 3 0.00057062 27720 TMT1-4 75.669 40.465 0 0 0 0 22.485 15.348 0 0 0 0 22 15 0 0 0 0 1 1 2678.3 8713 780 8632 13770 17964 17964 1 IEEVPELPLVVEDK Unmodified 1607.8658 0.86580451 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 4 0 1 75.128 75.128 3 9.7761E-11 24099 TMT1-3 126.1 96.29 84.517 139.39 104.25 109.94 158.47 111.67 80 138 109 109 160 109 2 2 2 2 2 2 22367 8714 1041 8633 13771 17965;17966 17965 2 IEEVPELPLVVEDKVEGYK Unmodified 2184.1566 0.15656681 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 1 5 0 1 77.625 77.625 4 2.9055E-13 24895 TMT1-4 110.33 95.867 115.6 145.8 104.37 95.089 134.25 166.73 109 146 109 95 138 160 2 2 2 2 2 2 9411.3 8715 1041 8634 13772 17967;17968 17968 2 IEFGVDVTTK Unmodified 1107.5812 0.58119023 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 6 0 1 61.497 61.497 2 0.0014479 18674 TMT1-5 102.52 57.442 99.503 145.82 104.82 86.709 113.47 112.96 94 145 109 87 116 109 1 1 1 1 1 1 12080 8716 843 8635 13773 17969 17969 1 IEFILDNVVGVESR Unmodified 1588.8461 0.84607213 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 6 0 1 84.53 84.53 3 0.0061236 27691 TMT1-5 58.079 29.782 7.0701 14.449 61.853 0 14.643 30.496 7 15 58 0 15 29 1 1 1 0 1 1 2153.3 8717 2121 8636 13774 17970 17970 1 IEFISTMEGYK Unmodified 1316.6322 0.63223953 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 0 7 0 1 70.02 70.02 3 0.014814 21415 TMT1-6 57.019 24.957 23.215 36.153 35.035 36.613 34.397 45.922 22 36 36 36 36 44 1 1 1 1 1 1 4185.5 8718 2319 8637 13775 17971 17971 1 IEFPILEDSSELQLK Unmodified 1759.9244 0.92438203 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 5 0 1 82.309 82.309 3 8.6667E-05 26664 TMT1-4 82.102 57.564 23.37 21.474 21.407 22.238 28.278 30.107 22 22 22 22 29 29 1 1 1 1 1 1 3638 8719 2056 8638 13776 17972 17972 1 IEFTFER Unmodified 940.46543 0.46543219 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 5 0 1 58.602 58.602 2 0.0056478 17349 TMT1-4 133.79 85.676 99.117 160.94 156.81 138.13 178.36 134.56 94 160 160 138 181 131 1 1 1 1 1 1 26500 8720 199 8639 13777 17973 17973 1 IEGCIIGFDEYMNLVLDDAEEIHSK Unmodified 2909.3463 0.3463112 1429 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 0 0 0 5 0 1 93.351 93.351 4 0.03176 30892 TMT1-4 29.269 15.253 7.3955 46.317 0 16.395 6.523 30.728 7 44 0 15 7 29 1 2 0 1 1 2 1010.2 8721 1429 8640 13778 17974;17975 17974 2 IEGDHGAR Unmodified 853.40423 0.40422892 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 2 0 1 20.776 20.776 3 0.00113 3551 TMT1-1 113.5 47.828 9.5237 15.158 9.557 6.8593 11.809 12.455 9 15 10 7 12 12 1 1 1 1 1 1 1395.8 8722 409 8641 13779 17976 17976 1 IEGDMIVCAAYAHELPK Unmodified 1915.9172 0.91720493 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 5 0 1 63.089 63.089 3 3.6921E-05 19130 TMT1-4 58.159 29.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8723 1132 8642 13780 17977 17977 1 IEGEGSVLQAK Unmodified 1129.5979 0.59790293 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 4.5 0.5 1 1 49.987 49.987 2;3 7.8711E-06 13993 TMT1-4 126.67 56.718 207.23 303 260.74 249.14 281.33 307.51 196 302 269 247 290 296 2 2 2 2 2 2 28522 8724 1796 8643 13781;13782 17978;17979 17979 2 IEGFEVLK Unmodified 933.51713 0.51713341 1856 Q15435-5;Q15435-4;Q15435-3;Q15435-2;Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 0 6 0 1 64.19 64.19 2 0.017098 19712 TMT1-5 91.069 59.779 68.617 124.84 83.767 56.817 84.228 121.25 65 123 87 58 87 116 1 1 1 1 1 1 11630 8725 1856 8644 13783 17980 17980 1 IEGHQDAVTAALLIPK Unmodified 1674.9305 0.93047046 2140 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 61.339 61.339 4 7.0406E-05 18009 TMT1-6 78.285 61.004 92.198 131.79 82.154 80.98 83.117 121.28 87 131 87 80 87 116 1 1 1 1 1 1 8576.8 8726 2140 8645 13784 17981 17981 1 IEGLLAAFPK Unmodified 1057.6172 0.61718181 1154 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 0 9 0 1 76.22 76.22 3 0.0066479 22064 TMT1-8 62.303 32.955 115.55 144.6 113.11 70.599 130.21 103.95 109 145 116 73 131 101 2 2 2 2 2 2 15777 8727 1154 8646 13785 17982;17983 17982 2 IEGLQNLVNLR Unmodified 1267.7248 0.72483478 1856 Q15435-5;Q15435-4;Q15435-3;Q15435-2;Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 0 8 0 1 69.064 69.064 2 1.8579E-16 21117 TMT1-7 155.57 116.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8728 1856 8647 13786 17984 17984 1 IEGSGDQVDTLELSGGAR Unmodified 1802.8646 0.86463532 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 3 0 1 54.505 54.505 3 0.00067157 17038 TMT1-2 49.768 30.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8729 1226 8648 13787 17985 17985 1 IEGSNKVPVDPATYGQFYGGDSYIILYNYR Unmodified 3398.6459 0.64592234 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 1 7.33 0.471 2 1 75.743 75.743 4 1.3524E-34 23384 TMT1-6 120.13 114.81 407.41 617.51 433.76 339.31 459.47 543.34 385 613 451 342 472 522 6 6 6 6 6 6 258910 + 8730 506 8649 13788;13789;13790 17986;17987;17988;17989;17990;17991 17987 6 IEGTPLETIQK Unmodified 1227.6711 0.67106787 191 O43676 NDUFB3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 yes yes 0 0 0 0 0 6 0 1 57.67 57.67 3 0.0019376 17154 TMT1-5 78.488 46.645 61.214 94.359 91.474 95.724 83.245 97.829 58 94 94 94 87 94 1 1 1 1 1 1 8638.4 8731 191 8650 13791 17992 17992 1 IEGTQVLSGIQWFGR Unmodified 1689.8839 0.88385462 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 9 0 1 76.28 76.28 2 6.9723E-05 22164 TMT1-8 86.405 62.8 30.59 66.56 32.119 60.282 63.672 45.087 29 65 36 58 65 44 1 1 1 1 1 1 8332.8 8732 817 8651 13792 17993 17993 1 IEGWLSVPNR Unmodified 1169.6193 0.61930707 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 8 0 1 63.08 63.08 2 0.034641 18835 TMT1-7 68.371 31.217 154.01 172.78 117.78 93.501 118.11 182.11 145 174 123 94 123 174 1 1 1 1 1 1 47340 8733 1708 8652 13793 17994 17994 1 IEGYEDQVLITEHGDLGNSR Unmodified 2244.0659 0.065854319 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 3 0.707 1 2 1 57.354 57.354 3;4 1.3592E-23 18109 TMT1-2 133.98 127.82 260.94 441.05 314.45 284.32 332.49 324.17 247 436 328 283 341 313 6 6 6 6 6 6 151360 8734 1277 8653 13794;13795;13796;13797 17995;17996;17997;17998;17999;18000 17996 6 IEGYPDPEVVWFK Unmodified 1577.7766 0.77659558 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5;Q15746-10;Q15746-8 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 6 0 1 76.794 76.794 3 6.5503E-05 24646 TMT1-5 96.745 58.111 145.74 210.04 213.7 198.48 159.9 164.93 138 210 218 196 167 159 2 2 2 2 2 2 46075 8735 1870 8654 13798 18001;18002 18001 2 IEIESFYEGEDFSETLTR Unmodified 2163.9848 0.98481003 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4.33 0.471 2 1 76.732 76.732 2;3 1.0801E-13 24774 TMT1-3 124.07 109.98 92.6 54.126 80.281 57.566 55.442 75.17 87 58 80 58 58 72 2 2 2 2 2 2 85467 8736 640 8655 13799;13800;13801 18003;18004;18005 18003 3 IEINFPAEYPFKPPK Unmodified 1788.9451 0.94505789 1489 P68036;P68036-3;P68036-2 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 1 8 0 2 69.67 69.67 3;4 1.7124E-11 21325 TMT1-7 128.9 96.208 575.99 899.34 716.34 592.46 574.74 807.62 545 893 739 591 602 773 4 4 4 4 4 4 158210 8737 1489 8656 13802;13803 18006;18007;18008;18009 18008 4 IEIPLFHVLNAR Unmodified 1420.8191 0.81906951 2155 Q8IZ07;Q6ZTN6-2 ANKRD13A;ANKRD13D Ankyrin repeat domain-containing protein 13A;Ankyrin repeat domain-containing protein 13D no no 0 0 0 0 0 9 0 1 71.421 71.421 3 0.00068862 20177 TMT1-8 74.76 56.448 23.332 30.003 20.546 30.085 20.588 30.326 22 30 22 29 22 29 1 1 1 1 1 1 8130.8 8738 2155 8657 13804 18010 18010 1 IEIPLPFGGK Unmodified 1069.6172 0.61718181 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 8 0 1 74.708 74.708 3 0.0040001 23333 TMT1-7 52.79 30.704 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8739 463 8658 13805 18011 18011 1 IEIQNIFEEAQSLVR Unmodified 1787.9418 0.94176342 2902 Q9UL15;Q9UL15-2 BAG5 BAG family molecular chaperone regulator 5 yes no 0 0 0 0 0 6.5 0.5 1 1 88.811 88.811 3 7.6166E-08 28646 TMT1-6 86.497 62.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8740 2902 8659 13806;13807 18012;18013 18013 2 IEIQTLTGLFK Unmodified 1261.7282 0.72818882 1317 P55212;P55212-2 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 yes no 0 0 0 0 0 9 0 1 79.939 79.939 2 2.9528E-06 23535 TMT1-8 121.68 78.81 77.637 40.206 82.264 33.5 50.246 45.47 73 44 80 36 51 44 1 1 1 1 1 1 6560.5 8741 1317 8660 13808 18014 18014 1 IEKELETVCNDVLSLLDK Unmodified 2117.0926 0.092586341 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 1 6 0 1 96.385 96.385 4 0.00070116 31826 TMT1-5 63.337 41.327 38.144 35.946 50.849 44.544 27.494 53.581 36 37 51 44 30 51 2 2 2 2 2 2 4466 8742 1588 8661 13809 18015;18016 18015 2 IEKVEHSDLSFSK Unmodified 1517.7726 0.77257283 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 1 6.5 0.5 1 1 48.657 48.657 4 0.0012122 13572 TMT1-5 75.764 45.852 1776.9 2081.5 1662.1 1510.4 1711.3 2606.6 1675 2095 1722 1502 1788 2491 3 3 3 3 3 3 111030 8743 1399 8662 13810;13811 18017;18018;18019 18017 3 IELEETIK Unmodified 973.53318 0.53317741 1339 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 0 0 4 0 1 56.547 56.547 2 0.013083 16850 TMT1-3 95.741 25.217 138.74 196.85 139.91 100.33 149.73 135.37 131 196 145 102 152 131 1 1 1 1 1 1 10267 8744 1339 8663 13812 18020 18020 1 IELLGSYDPQK Unmodified 1261.6554 0.65541781 877 P24666;P24666-3;P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 6.5 0.5 1 1 63.863 63.863 3 0.00016299 19050 TMT1-6 101.38 62.418 207.71 229.85 242.69 194.11 300.85 269.64 196 233 246 196 305 261 3 3 3 3 3 3 40670 8745 877 8664 13813;13814 18021;18022;18023 18023 3 IENHEGVR Unmodified 952.47264 0.47264284 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 2 0.816 1 1 1 23.876 23.876 3 2.5688E-08 4816 TMT 1-phospho 168.26 89.142 1057 1639.2 1299.3 1102.3 1201.7 1453.8 1000 1628 1342 1100 1245 1396 8 8 8 8 8 8 250610 8746 706;707 8665 13815;13816;13817 18024;18025;18026;18027;18028;18029;18030;18031 18024 8 IENLELVPVDSK Unmodified 1354.7344 0.73439641 585 P09327 VIL1 Villin-1 yes yes 0 0 0 0 0 5 0 1 66.761 66.761 3 0.0033524 20575 TMT1-4 68.034 46.477 37.948 58.065 65.117 34.517 50.492 36.935 36 58 65 36 51 36 1 1 1 1 1 1 4484.3 8747 585 8666 13818 18032 18032 1 IENLTSAVNSLNFIIK Unmodified 1774.9829 0.98289996 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 9 0 1 85.5 85.5 3 2.8766E-23 25751 TMT1-8 149.31 108.21 154.61 187.58 184.99 167.77 198.4 211.8 146 189 189 167 204 204 3 3 3 3 3 3 56197 8748 1684 8667 13819 18033;18034;18035 18034 3 IENVVLVVPVK Unmodified 1207.754 0.75400964 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 8 0 1 70.593 70.593 3 0.00332 21701 TMT1-7 73.848 44.507 154.07 141.65 134.16 131.99 169.74 180.64 145 145 138 131 174 174 1 1 1 1 1 1 31261 8749 2717 8668 13820 18036 18036 1 IEPADAHVLQK Unmodified 1219.6561 0.65608651 2604 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 0 0 5 0 1 45.623 45.623 3 0.030298 12235 TMT1-4 49.5 20.153 60.905 109.69 130.32 101.73 105.71 105.72 58 109 131 102 109 102 1 1 1 1 1 1 7046.7 8750 2604 8669 13821 18037 18037 1 IEPEPFENCLLRPGSPAR Unmodified 2081.0364 0.036408866 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 1 5 0 1 58.101 58.101 3 0.0020338 17178 TMT1-4 58.427 31.457 61.465 79.946 61.576 81.883 100.36 74.954 58 80 65 80 102 73 1 1 1 1 1 1 15173 8751 1160 8670 13822 18038 18038 1 IEPFTTYFLNLQGGK Unmodified 1726.893 0.89302232 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 82.627 82.627 3 1.0525E-16 24607 TMT1-8 131.66 99.836 68.731 71.197 110.12 71.777 77.017 98.006 65 73 109 73 80 94 1 1 1 1 1 1 7501.4 8752 1229 8671 13823 18039 18039 1 IEPPDTGLYYDEYLK Unmodified 1814.8614 0.86144742 1511 P80303-2;P80303 NUCB2 Nucleobindin-2;Nesfatin-1 yes no 0 0 0 0 0 5 0 1 70.385 70.385 3 0.0039091 21987 TMT1-4 59.709 37.495 61.538 72.595 55.453 59.191 47.745 83.918 58 73 58 58 51 80 1 1 1 1 1 1 8953.9 8753 1511 8672 13824 18040 18040 1 IEPSVNFLK Unmodified 1045.5808 0.5807963 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 7.5 0.5 1 1 62.88 62.88 2 6.4606E-05 18671 TMT1-6 152.34 70.382 385.79 402.3 282.93 301.24 346.39 353.62 363 407 298 297 356 341 3 3 3 3 3 3 52365 8754 1656 8673 13825;13826 18041;18042;18043 18042 3 IEQETQKR Unmodified 1030.5407 0.5407224 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 4 0 1 29.381 29.381 3 0.008717 6111 TMT1-3 83.358 42.856 177.48 155.66 156.38 146.1 163.08 142.45 167 160 160 145 167 138 1 1 1 1 1 1 12114 8755 251 8674 13827 18044 18044 1 IEQKEELDDVIALD Unmodified 1628.8145 0.81449723 2847 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 1 2 0 1 69.96 69.96 3 0.034114 22633 TMT1-1 49.627 30.552 15.722 29.161 37.983 4.9831 21.486 37.763 15 29 37 7 22 36 1 1 1 1 1 1 4064 8756 2847 8675 13828 18045 18045 1 IEQLCSGAAYCQFMDMLFPGSIALK Unmodified 2849.3261 0.32605023 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 9 0 1 98.178 98.178 4 8.2564E-05 30331 TMT1-8 47.796 31.673 15.89 14.517 22.205 14.533 28.633 30.097 15 15 22 15 29 29 1 1 1 1 1 1 4497.4 8757 1868 8676 13829 18046 18046 1 IEQLQNHENEDIYK Unmodified 1771.8377 0.83769228 85 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 0 4 0 1 47.367 47.367 3 0.00012572 13211 TMT1-3 83.823 73.484 61.522 95.217 38.935 59.476 84.912 97.781 58 94 44 58 87 94 1 1 1 1 1 1 18708 8758 85 8677 13830 18047 18047 1 IEQLSPFPFDLLLK Unmodified 1658.9283 0.92834519 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 95.392 95.392 3 7.5226E-07 29339 TMT1-8 100.4 69.526 158.13 192.52 130.01 156.18 117.27 183.64 149 193 138 152 125 175 4 4 4 4 4 3 16591 8759 1566 8678 13831;13832 18048;18049;18050;18051 18050 4 IEQSQHLFQAHK Unmodified 1464.7474 0.74736113 1282 P53367-3;P53367-2;P53367 ARFIP1 Arfaptin-1 yes no 0 0 0 0 0 7 0 1 40.484 40.484 4 0.014523 9886 TMT1-6 52.555 31.304 84.659 116.04 100.18 62.766 122.71 89.24 80 116 102 65 123 87 1 1 1 1 1 1 12578 8760 1282 8679 13833 18052 18052 1 IESDVQEPTEPEDDLDIMLGNK Unmodified 2486.137 0.13702993 803 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 0 3 0 1 75.222 75.222 3 0.0035811 25141 TMT1-2 35.538 27.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8761 803 8680 13834 18053 18053 1 IESEGLLSLTTQLVK Unmodified 1629.9189 0.91890272 2300 Q92552;Q92552-2 MRPS27 28S ribosomal protein S27, mitochondrial yes no 0 0 0 0 0 7 0 1 80.641 80.641 3 0.0010233 25556 TMT1-6 68.044 44.44 23.222 44.806 26.541 45.596 48.627 76.43 22 44 29 44 51 73 1 1 1 1 1 1 4372.2 8762 2300 8681 13835 18054 18054 1 IESFVVEDIATGVQTLYSK Unmodified 2098.0834 0.083401864 370 O95786-2;O95786 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 0 7 0 1 93.283 93.283 3 5.4957E-05 30286 TMT1-6 67.43 43.143 39.131 74.487 32.664 60.684 40.604 76.659 37 73 37 58 44 73 2 2 2 2 2 2 3418.2 8763 370 8682 13836 18055;18056 18056 2 IESILMSLPLTAR Unmodified 1442.8167 0.81668625 1040 P36551 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 0 0 0 0 0 9 0 1 85.013 85.013 3 0.00027565 25501 TMT1-8 79.633 19.005 14.791 29.63 13.702 15.173 21.531 22.838 14 29 15 15 22 22 1 1 1 1 1 1 3136.4 8764 1040 8683 13837 18057 18057 1 IESLPPLLIGK Unmodified 1178.7275 0.72746054 2193 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 0 0 9 0 1 75.197 75.197 3 0.0010301 21727 TMT1-8 76.927 40.402 38.147 66.173 24.826 53.641 33.101 60.883 36 65 29 51 36 58 1 1 1 1 1 1 3044.8 8765 2193 8684 13838 18058 18058 1 IESLSSQLSNLQK Unmodified 1445.7726 0.77257283 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 7.67 0.471 1 2 64.064 64.064 2;3 3.6024E-47 19098 TMT1-7 224.82 165.57 261.2 406.16 300.22 262.11 280.15 324.6 247 403 312 261 290 312 3 3 3 3 3 3 156630 8766 816 8685 13839;13840;13841 18059;18060;18061 18060 3 IESVLSSSGK Unmodified 1005.5342 0.53424004 766 P17900 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 0 0 0 0 0 7 0 1 54.039 54.039 2 0.00014648 15114 TMT1-6 134.51 66.285 91.854 184.8 94.963 86.425 159.81 104.17 87 181 102 87 160 102 1 1 1 1 1 1 10986 8767 766 8686 13842 18062 18062 1 IETDYWPCPPSLAVVETEWR Unmodified 2447.1467 0.14674718 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 6 0 1 83.811 83.811 3 6.6177E-07 27367 TMT1-5 83.213 79.825 31.758 44.086 35.203 45.478 27.451 53.583 30 44 37 44 30 51 2 2 2 2 2 2 11281 8768 1623 8687 13843 18063;18064 18063 2 IETELRDICNDVLSLLEK Unmodified 2159.1144 0.11438442 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 1 6.33 0.471 2 1 98.852 98.852 3;4 7.7898E-05 32146 TMT1-6 75.911 62.455 69.753 102.28 92.319 89.408 90.263 153.06 66 102 95 88 95 146 5 5 5 4 4 5 13138 8769 1471 8688 13844;13845;13846 18065;18066;18067;18068;18069 18068 5 IETIEVMEDR Unmodified 1233.5911 0.59110299 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 0 2.5 0.5 1 1 58.276 58.276 2 1.8531E-09 18288 TMT1-1 173.32 93.418 169.19 294.33 168.77 192.17 231.03 295.09 160 290 181 189 239 283 3 3 3 3 3 3 68338 8770 1259 8689 13847;13848 18070;18071;18072 18070 3 IETISHEDLQR Unmodified 1339.6732 0.67319314 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 3.5 0.5 1 1 40.578 40.578 3 3.2683E-17 11487 TMT1-2 181.68 128.11 161.02 203.25 176.41 168.59 182.44 218.65 152 204 182 167 189 210 2 2 2 2 2 2 39908 8771 529 8690 13849;13850 18073;18074;18075 18073 3 IETLDPALIRPGR Unmodified 1449.8304 0.83036248 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 1 6 0 1 55.844 55.844 3 2.8255E-05 16455 TMT1-5 84.718 55.569 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8772 1415 8691 13851 18076 18076 1 IETNENNLESAK Unmodified 1360.647 0.64703797 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 3 0 1 44.449 44.449 3 0.0099892 13080 TMT1-2 59.185 37.934 54.062 64.573 56.342 50.889 79.553 52.096 51 65 58 51 80 51 1 1 1 1 1 1 10952 8773 1609 8692 13852 18077 18077 1 IETQDIQALR Unmodified 1185.6354 0.63535107 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 4 0 2 50.654 50.654 2;3 2.8097E-05 14543 TMT1-3 134.68 70.636 145 188.38 175.97 176 196.5 225.71 137 189 181 174 203 217 2 2 2 2 2 2 67342 8774 859 8693 13853;13854 18078;18079 18079 2 IETSINLAWTAGSNNTR Unmodified 1846.9173 0.91733959 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 7.67 0.471 1 2 64.305 64.305 2;3 5.0985E-18 19228 TMT1-7 130.61 95.071 154.73 195.45 159.24 176.65 273.12 217.13 146 196 166 175 276 211 3 3 3 3 3 3 43164 8775 2959 8694 13855;13856;13857 18080;18081;18082 18082 3 IETSSLDGENRR Unmodified 1375.6692 0.66917039 1749 Q14112-2;Q14112 NID2 Nidogen-2 yes no 0 0 0 0 1 3 0 1 33.834 33.834 3 0.044654 8906 TMT1-2 49.28 31.144 54.016 64.443 64.272 43.079 62.888 90.947 51 65 65 44 65 87 1 1 1 1 1 1 6425.6 8776 1749 8695 13858 18083 18083 1 IEVASSVK Unmodified 831.47018 0.47018322 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 6 0 1 45.499 45.499 2 0.025886 12438 TMT1-5 84.743 24.266 77.099 108.86 114.42 93.672 119.68 136.23 73 109 116 94 123 131 1 1 1 1 1 1 32714 8777 748 8696 13859 18084 18084 1 IEVEKPFAIAK Unmodified 1243.7176 0.71762413 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 1 7.5 0.5 1 1 58.387 58.387 2;3 0.00050985 16808 TMT1-6 80.916 53.801 203.64 409.23 412.61 243.25 462.06 444.13 194 404 415 253 467 429 1 1 1 1 1 1 169570 8778 858 8697 13860;13861 18085;18086 18085 2 IEVFVQTLLHLAAK Unmodified 1580.929 0.92901389 1631 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 0 9 0 1 96.422 96.422 3 3.0863E-09 29759 TMT1-8 107.14 74.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8779 1631 8698 13862 18087 18087 1 IEVIEIMTDR Unmodified 1217.6326 0.63257388 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 4.67 0.471 1 2 71.313 71.313 2;3 0.00015556 22312 TMT1-4 106.35 71.005 161.2 173.48 171.99 113.53 159.78 282.19 152 174 174 116 167 269 3 2 3 3 3 3 109460 8780 601 8699 13863;13864;13865 18088;18089;18090 18089 3 IEVIKPGDLGVDLTSK Unmodified 1682.9455 0.94545182 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 1 7 0 2 67.142 67.142 3;4 0.00028854 20299 TMT1-6 75.574 65.342 359.59 753.95 421.04 446.69 602.22 781.25 341 738 451 442 621 749 2 2 2 2 2 2 53126 8781 1055 8700 13866;13867 18091;18092 18092 2 IEVLQQHENEDIYK Unmodified 1756.8632 0.86317875 78 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 0 4 0 1 52.707 52.707 3 1.2724E-07 15342 TMT1-3 111.35 87.065 108.39 130.97 66.282 96.528 120.35 112.76 102 131 73 94 123 109 1 1 1 1 1 1 15932 8782 78 8701 13868 18093 18093 1 IEVPLYSLLEQTHLK Unmodified 1781.9927 0.99273636 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 8 0 1 78.572 78.572 3 4.4495E-11 24853 TMT1-7 126.48 103.95 61.245 86.89 92.608 80.322 85.016 66.864 58 87 94 80 87 65 2 2 2 2 2 2 10157 8783 2303 8702 13869 18094;18095 18095 2 IEVSEDGTK Unmodified 976.47131 0.47130543 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 2 0 1 43.299 43.299 2 0.016517 12281 TMT1-1 79.974 42.246 30.397 66.024 65.005 27.168 34.831 45.91 29 65 65 29 36 44 1 1 1 1 1 1 4401.6 8784 525 8703 13870 18096 18096 1 IEVSQLLK Unmodified 928.55933 0.55933258 1625 Q08722-3;Q08722-4;Q08722;Q08722-2 CD47 Leukocyte surface antigen CD47 yes no 0 0 0 0 0 7.33 0.471 2 1 63.362 63.362 2;3 0.0026086 18882 TMT1-7 135.83 60.721 607.39 1093.7 864.62 641.91 672.02 985 576 1080 889 646 703 942 3 3 3 3 3 3 296600 8785 1625 8704 13871;13872;13873 18097;18098;18099 18099 3 IEVVNFLVPNAVYDIVK Unmodified 1931.0768 0.076800343 330 O94905;O94905-2;O94905-3 ERLIN2 Erlin-2 yes no 0 0 0 0 0 8 0 1 92.19 92.19 3 0.00031664 29925 TMT1-7 70.96 54.216 30.777 13.114 46.102 12.669 52.01 21.968 29 15 44 15 51 22 1 1 1 1 1 1 3790.6 8786 330 8705 13874 18100 18100 1 IEVVNMLAPYAVFDIVR Unmodified 1948.0492 0.049205384 280 O75477 ERLIN1 Erlin-1 yes yes 0 0 0 0 0 9 0 1 94.826 94.826 3 3.8012E-05 29230 TMT1-8 69.737 46.361 15.958 14.706 10.632 6.893 6.6091 11.537 15 15 11 7 7 11 1 1 1 1 1 1 4353.5 8787 280 8706 13875 18101 18101 1 IEWLESHQDADIEDFK Unmodified 1973.9007 0.90068647 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4.5 0.5 2 2 68.017 68.017 3;4 9.9821E-29 21004 TMT1-4 182.18 166.3 1064 1385.4 1241 979.11 1134.8 1373.7 1005 1389 1269 983 1173 1319 7 7 7 7 7 7 408480 8788 640 8707 13876;13877;13878;13879 18102;18103;18104;18105;18106;18107;18108 18106 7 IEYAKPTR Unmodified 976.53418 0.53418046 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 1 7 0 1 37.372 37.372 3 0.0019676 8569 TMT1-6 115.71 62.998 277.84 594.73 409.76 389.18 441.13 492.7 264 583 429 386 455 474 1 1 1 1 1 1 36889 8789 713 8708 13880 18109 18109 1 IEYDCELVPR Unmodified 1292.6071 0.60708741 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 3 0 1 55.885 55.885 2 0.0049461 17536 TMT1-2 91.584 53.498 92.003 155 95.241 96.032 113.04 112.97 87 153 101 95 116 109 2 2 2 2 2 2 17391 8790 2822 8709 13881 18110;18111 18110 2 IEYDDFVECLLR Unmodified 1570.7337 0.73374448 211 O43920 NDUFS5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 yes yes 0 0 0 0 0 5 0 1 82.194 82.194 3 0.00057502 26628 TMT1-4 83.226 59.375 15.886 14.507 22.854 0 14.643 30.496 15 15 22 0 15 29 1 1 1 0 1 1 3594.2 8791 211 8710 13882 18112 18112 1 IEYDTFGELK Unmodified 1213.5867 0.58666954 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 5 0 1 64.045 64.045 3 0.0021335 19559 TMT1-4 82.831 70.685 130.8 250.15 165.78 153.18 221.65 194.08 124 246 174 153 225 188 2 2 2 2 2 2 22188 8792 553 8711 13883 18113;18114 18114 2 IEYQFFEDR Unmodified 1245.5666 0.5666028 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 4 0 1 62.629 62.629 2 0.0021416 19290 TMT1-3 105.4 63.287 108.03 121.31 135.96 124.13 117.21 167.22 102 123 138 123 123 160 1 1 1 1 1 1 41733 8793 2789 8712 13884 18115 18115 1 IFAPNHVVAK Unmodified 1094.6237 0.62366417 1568 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 0 9 0 1 45.794 45.794 3 6.2774E-05 10119 TMT1-8 114.84 51.355 224.8 287.84 205.12 180.07 294.19 299.68 212 288 214 181 299 289 1 1 1 1 1 1 25293 8794 1568 8713 13885 18116 18116 1 IFAQLDSIIDDR Unmodified 1404.7249 0.72489436 2973 Q9Y2S2-2;Q9Y2S2 CRYL1 Lambda-crystallin homolog yes no 0 0 0 0 0 5.5 0.5 1 1 80.018 80.018 3 0.00019694 25796 TMT1-4 91.858 81.248 38.06 43.268 58.748 27.398 42.406 38.232 36 44 58 29 43 37 2 2 2 2 2 2 7272.4 8795 2973 8714 13886;13887 18117;18118 18117 2 IFCCHGGLSPDLQSMEQIR Unmodified 2247.0235 0.023477694 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 7 0 1 62.031 62.031 3 0.0027888 18261 TMT1-6 51.733 43.545 53.906 87.882 62.864 43.138 64.204 52.534 51 87 65 44 65 51 1 1 1 1 1 1 13547 8796 1044;1413;1414 8715 13888 18119 18119 1 IFDIDEAEEGVK Unmodified 1363.6507 0.65072636 803 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 67.053 67.053 3 0.00034993 21900 TMT1-2 88.338 67.087 92.485 85.105 73.396 66.172 84.604 97.79 87 87 73 66 87 94 2 2 1 2 2 2 10277 8797 803 8716 13889;13890 18120;18121 18121 2 IFDLDGDECLSHEEFLGVLK Unmodified 2335.1042 0.10421366 2154 Q8IYU8 MICU2 Calcium uptake protein 2, mitochondrial yes yes 0 0 0 0 0 5 0 1 79.843 79.843 4 1.266E-23 25701 TMT1-4 132.47 111.07 46.76 58.113 26.679 21.924 28.293 30.107 44 58 29 22 29 29 1 1 1 1 1 1 3378.9 8798 2154 8717 13891 18122 18122 1 IFDPQNPDENE Unmodified 1316.5521 0.55207495 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 3 0 2 60.402 60.402 2 2.1505E-06 19302 TMT1-2 103.7 97.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8799 1127 8718 13892;13893 18123;18124 18123 2 IFDSEEILAGYK Unmodified 1383.6922 0.69219725 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 5.5 0.5 1 1 72.877 72.877 3 0.00067394 23187 TMT1-5 80.979 59.422 107.93 121.04 152.9 108.6 133.67 165.68 102 123 153 110 138 159 3 3 3 3 3 3 23668 8800 203 8719 13894;13895 18125;18126;18127 18127 3 IFDSEEILAGYKR Unmodified 1539.7933 0.79330827 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 7 0 1 63.942 63.942 3 4.9885E-06 19028 TMT1-6 88.275 71.502 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8801 203 8720 13896 18128 18128 1 IFDTYVGAQR Unmodified 1168.5877 0.58767259 2156 Q8IZ81 ELMOD2 ELMO domain-containing protein 2 yes yes 0 0 0 0 0 6 0 1 55.594 55.594 2 0.0018175 16357 TMT1-5 69.915 39.353 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8802 2156 8721 13897 18129 18129 1 IFEDIPTLEDLAETLK Unmodified 1845.9612 0.96116146 1899 Q16666-3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 0 6 0 1 97.462 97.462 3 0.024021 32300 TMT1-5 43.592 17.157 15.945 29.781 0 7.3723 14.817 15.567 15 29 0 7 15 15 1 1 0 1 1 1 1880 8803 1899 8722 13898 18130 18130 1 IFEDIPTLEDLAETLKK Unmodified 1974.0561 0.05612448 1899 Q16666-3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 1 7 0 1 89.734 89.734 3 3.0032E-07 28955 TMT1-6 96.163 78.944 30.453 74.812 48.238 51.673 63.555 60.014 29 73 51 51 65 58 1 1 1 1 1 1 9493.4 8804 1899 8723 13899 18131 18131 1 IFEGNTNTK Unmodified 1022.5033 0.50327426 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 6 0 1 44.507 44.507 2 2.5743E-13 11974 TMT1-5 157.59 97.571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8805 666 8724 13900 18132 18132 1 IFEGTNDILR Unmodified 1176.6139 0.61388734 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 61.153 61.153 2 0.010638 18420 TMT1-4 83.358 36.364 38.003 58.218 55.71 75.447 54.327 83.73 36 58 58 73 58 80 1 1 1 1 1 1 17464 8806 1194 8725 13901 18133 18133 1 IFEMGPVFTL Unmodified 1152.5889 0.58891815 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 8 0.816 1 1 1 98.27 98.27 2 0.00030448 32119 TMT1-7 124.08 98.342 61.273 110.71 67.63 74.584 62.449 92.026 58 109 72 73 66 88 2 2 2 2 2 2 43332 8807 390 8726 13902;13903;13904 18134;18135;18136 18135 3 IFEYETQR Unmodified 1084.5189 0.51892433 1218 P50402 EMD Emerin yes yes 0 0 0 0 0 4 0 1 49.758 49.758 2 0.006494 14218 TMT1-3 104.44 54.398 129.99 212.1 154.31 121.91 176.98 196.42 123 210 160 123 181 189 1 1 1 1 1 1 34341 8808 1218 8727 13905 18137 18137 1 IFEYLDR Unmodified 954.48108 0.48108226 1578 Q03518 TAP1 Antigen peptide transporter 1 yes yes 0 0 0 0 0 5 0 1 63.936 63.936 2 0.0083627 19432 TMT1-4 116.88 77.221 91.872 162.19 111.12 94.287 97.404 144.33 87 160 116 94 102 138 1 1 1 1 1 1 21947 8809 1578 8728 13906 18138 18138 1 IFFYQSPYDSEQVPQALR Unmodified 2187.0637 0.063669474 1826 Q15080;Q15080-3 NCF4 Neutrophil cytosol factor 4 yes no 0 0 0 0 0 7 0 1 73.466 73.466 3 0.00071609 22781 TMT1-6 62.203 53.889 23.26 44.913 20.011 22.031 43.737 37.128 22 44 22 22 44 36 1 1 1 1 1 1 5343.3 8810 1826 8729 13907 18139 18139 1 IFGGEIK Unmodified 762.42759 0.42759012 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 7 0 1 55.092 55.092 2 0.010591 15570 TMT1-6 107.43 32.119 1096.8 1901.9 1778.7 1178 1700.8 2048.3 1041 1885 1803 1204 1745 1967 1 1 1 1 1 1 170710 8811 530 8730 13908 18140 18140 1 IFGGLDMLAEK Unmodified 1192.6162 0.61619553 2311 Q92688-2;Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 0 7.5 0.5 2 2 76.56 76.56 2;3 9.3327E-07 24044 TMT1-6 143.89 81.344 154.44 222.72 183.93 168.62 156.84 294 146 222 190 167 167 280 4 4 4 4 4 4 41069 8812 2311 8731 13909;13910;13911;13912 18141;18142;18143;18144 18142 4 IFGPIWNR Unmodified 1001.5447 0.54468557 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 9 0 1 65.92 65.92 2 0.0070436 18114 TMT1-8 119.06 78.956 392.32 489.72 373.94 350.22 417.8 554.12 370 491 389 348 433 531 2 2 2 2 2 2 60815 8813 655 8732 13913 18145;18146 18146 2 IFGQANTTLK Unmodified 1091.5975 0.597509 997 P33121-2;P33121-3;P33121 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 0 0 0 0 0 9 0 1 85.44 85.44 2 0.031578 25648 TMT1-8 66.621 21.983 61.472 56.224 80.35 56.716 100.45 105.87 58 58 80 58 102 102 1 1 1 1 1 1 14361 8814 997 8733 13914 18147 18147 1 IFGSEAAWK Unmodified 1007.5076 0.50763136 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 61.794 61.794 2 0.00353 18230 TMT1-7 101.43 61.386 246.6 239.81 190.06 191.89 236.56 317.31 232 244 198 190 245 304 1 1 1 1 1 1 30964 8815 1194 8734 13915 18148 18148 1 IFGSYDPR Unmodified 953.46068 0.46068117 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 6.5 0.5 1 1 52.196 52.196 2 0.014105 14429 TMT1-6 94.401 48.951 322.96 427.57 361.84 251.87 338.91 363.43 305 428 370 256 347 350 2 2 2 2 2 2 52076 8816 564 8735 13916;13917 18149;18150 18150 2 IFGVTTLDIVR Unmodified 1232.7129 0.71287311 1075 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 73.047 73.047 3 9.8261E-09 20902 TMT1-8 135.86 90.898 84.499 131.79 113.68 78.513 114.4 96.94 80 131 116 80 116 94 2 2 2 2 2 2 33897 8817 1075 8736 13918 18151;18152 18152 2 IFHELTQTDK Unmodified 1230.6245 0.62445203 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 6 0 1 48.945 48.945 3 0.00056627 13700 TMT1-5 97.813 63.947 153.59 198.58 167.38 183.97 206.72 222.23 145 199 174 181 213 214 1 1 1 1 1 1 31169 8818 657 8737 13919 18153 18153 1 IFHLEVCSR Unmodified 1159.5808 0.58081308 308;2315 O75886;O75886-2;Q92783-2;Q92783 STAM2;STAM Signal transducing adapter molecule 2;Signal transducing adapter molecule 1 no no 0 0 0 0 0 7 0 1 49.047 49.047 3 0.00031373 13145 TMT1-6 80.755 48.284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8819 308;2315 8738 13920 18154 18154 1 IFHVNWFR Unmodified 1117.5821 0.58213371 1908 Q16822;Q16822-3;P35558-2;P35558 PCK2;PCK1 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial;Phosphoenolpyruvate carboxykinase, cytosolic [GTP] yes no 0 0 0 0 0 9 0 1 60.554 60.554 3 0.002298 15945 TMT1-8 82.671 41.169 54.188 57.369 41.238 59.59 71.567 59.786 51 58 44 58 73 58 1 1 1 1 1 1 7011.3 8820 1908 8739 13921 18155 18155 1 IFIAQPAWVLR Unmodified 1312.7656 0.76557738 254 O75165 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 0 0 0 0 0 9 0 1 75.338 75.338 2 0.0016534 21769 TMT1-8 80.438 26.884 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8821 254 8740 13922 18156 18156 1 IFIGTFK Unmodified 824.47963 0.47962569 709 P14678-2;P63162;P14678;P63162-2;P14678-3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 0 9 0 1 65.685 65.685 2 0.010551 17953 TMT1-8 119.89 57.045 531.25 975.65 596.31 541.66 750.34 879.36 503 960 630 541 770 845 1 1 1 1 1 1 70348 8822 709 8741 13923 18157 18157 1 IFINLPR Unmodified 871.52797 0.52797287 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 0 9 0 1 62.532 62.532 2 0.0078652 16729 TMT1-8 150.07 68.969 327.7 608.05 493.75 350.41 376.87 588.34 311 600 506 354 395 562 1 1 1 1 1 1 60382 8823 171 8742 13924 18158 18158 1 IFLQDIK Unmodified 875.51165 0.5116541 453 P02794 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 0 0 0 0 0 8 0 1 64.286 64.286 2 0.0035087 19194 TMT1-7 139.28 47.695 269.22 374.69 241.27 242.6 400.36 413.91 254 373 255 242 407 399 1 1 1 1 1 1 77516 8824 453 8743 13925 18159 18159 1 IFNHCFTGNCVIDWLVSNQSVR Unmodified 2665.253 0.25296036 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 9 0 2 77.679 77.679 3;4 3.8103E-33 22726 TMT1-8 139.02 101.93 231.17 372.64 326.19 286.29 248.68 325.5 219 370 335 284 261 312 5 5 5 5 5 5 405180 8825 567 8744 13926;13927 18160;18161;18162;18163;18164 18163 5 IFNTNNLWISLAAVK Unmodified 1702.9406 0.94064121 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 9 0 1 86.28 86.28 3 2.2025E-05 26085 TMT1-8 72.315 41.488 38.115 50.973 43.097 28.306 43.705 29.667 36 51 44 29 44 29 1 1 1 1 1 1 35409 8826 1910 8745 13928 18165 18165 1 IFQEALVQITLPTVQK Unmodified 1827.0506 0.050585593 2589 Q9BZQ8 FAM129A Protein Niban yes yes 0 0 0 0 0 9 0 2 83.404 83.404 3;4 0.0026521 24929 TMT1-8 52.372 31.99 45.393 73.557 63.072 58.711 49.123 44.436 43 73 65 58 51 43 2 2 2 2 2 2 8051.2 8827 2589 8746 13929;13930 18166;18167 18166 2 IFQILYANEGESK Unmodified 1510.7668 0.76675917 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 72.935 72.935 3 0.00021922 22614 TMT1-6 87.498 64.581 145.35 141.85 157.38 145.93 168.8 189.2 137 145 160 145 174 182 3 3 3 3 3 3 22558 8828 251 8747 13931;13932 18168;18169;18170 18169 3 IFQKGESPVDYDGGR Unmodified 1666.7951 0.79509919 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 6 0 1 49.811 49.811 3 0.04262 14130 TMT1-5 45.883 29.577 76.665 209.11 102.51 55.985 69.058 137.68 73 203 109 58 73 131 1 1 1 1 1 1 36244 8829 1827 8748 13933 18171 18171 1 IFQLEQENK Unmodified 1147.5873 0.58733824 2763 Q9NVK5;Q9NVK5-2 FGFR1OP2 FGFR1 oncogene partner 2 yes no 0 0 0 0 0 6 0 1 56.739 56.739 3 0.0015286 16816 TMT1-5 91.867 51.515 115.57 144.63 111 117.96 117.5 167.21 109 145 116 116 123 160 1 1 1 1 1 1 10311 8830 2763 8749 13934 18172 18172 1 IFQNAPTDPTQDFSTQVAK Unmodified 2107.0222 0.02219859 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 6 0 1 65.468 65.468 4 0.002132 20227 TMT1-5 51.819 36.565 92.342 108.45 77.712 42.114 71.565 83.238 87 109 80 44 73 80 1 1 1 1 1 1 13586 8831 1122 8750 13935 18173 18173 1 IFQNDMQETVAQLFK Unmodified 1810.8924 0.89237039 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 8 0 1 84.533 84.533 3 9.5034E-28 27116 TMT1-7 181.76 157.2 262.7 387.87 242.87 262.42 212.73 612.21 248 385 258 257 235 580 2 2 2 2 2 2 104800 8832 1684 8751 13936 18174;18175 18175 2 IFQNDMQETVAQLFK Oxidation (M) 1826.8873 0.88728501 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 1 0 0 8 0 1 73.303 73.303 3 2.0487E-34 22784 TMT1-7 161.76 132.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8833 1684 8751 13937 18176 18176 258 1 IFQNLDGALDEVVLK Unmodified 1672.9036 0.903587 1571 Q02809;Q02809-2 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 0 0 0 0 0 6 0 1 84.462 84.462 3 0.0026452 27701 TMT1-5 62.861 42.754 30.725 35.635 35.732 20.812 58.708 29.239 29 36 36 22 58 29 1 1 1 1 1 1 4204 8834 1571 8752 13938 18177 18177 1 IFRDGEEAGAYDGPR Unmodified 1651.759 0.75904803 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 3.25 0.433 3 1 44.594 44.594 3;4 2.0666E-07 11852 TMT1-3 107.07 96.607 740.29 1190 807.73 851.26 937.19 1176.8 700 1178 851 839 972 1129 6 6 6 6 6 6 249520 8835 955 8753 13939;13940;13941;13942 18178;18179;18180;18181;18182;18183 18183 6 IFSAYIK Unmodified 840.47454 0.47454032 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 9 0 1 62.27 62.27 2 0.0079002 16661 TMT1-8 150.02 41.782 824.23 933.25 805 835.89 1123.7 1065.9 777 942 834 828 1146 1030 2 2 2 2 2 2 229030 8836 128 8754 13943 18184;18185 18185 2 IFSGGEDLDQEEK Unmodified 1465.6573 0.6572683 218 O60268-2;O60268-3;O60268 KIAA0513 Uncharacterized protein KIAA0513 yes no 0 0 0 0 0 2.5 0.5 1 1 56.785 56.785 3 1.8994E-21 17814 TMT1-2 147.33 102.25 37.926 42.895 81.575 49.832 55.761 76.227 36 44 80 51 58 73 1 1 1 1 1 1 9348.8 8837 218 8755 13944;13945 18186;18187 18187 2 IFSGPSSEQFGYAVQQFINPK Unmodified 2343.1535 0.15354711 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 82.956 82.956 4 4.1002E-06 24783 TMT1-8 65.521 35.629 115.09 198.35 145.4 147.77 108.8 167.46 109 196 152 145 116 160 2 2 2 2 2 2 22122 8838 758 8756 13946 18188;18189 18189 2 IFSGSSHQDLSQK Unmodified 1432.6947 0.69465686 1360 P60891 PRPS1 Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 8 1 1 1 42.727 42.727 3 1.573E-28 10699 TMT1-6 193.81 144.86 145.58 233.33 221.72 157.11 242.08 263.86 138 232 225 160 247 254 2 2 2 2 2 2 23218 8839 1360 8757 13947;13948 18190;18191 18190 2 IFSIPDEK Unmodified 947.4964 0.49639797 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;Q9Y4E8-4 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 6 0 1 61.699 61.699 2 0.033206 18751 TMT1-5 79.474 36.228 77.063 116.32 114.28 86.83 77.094 75.618 73 116 116 87 80 73 1 1 1 1 1 1 5774.7 8840 3012 8758 13949 18192 18192 1 IFSIVEQR Unmodified 990.54983 0.54983053 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 60.329 60.329 2 0.006527 17679 TMT1-7 71.501 17.344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8841 664 8759 13950 18193 18193 1 IFSLLVPTALPLLR Unmodified 1551.9752 0.97523581 1578 Q03518 TAP1 Antigen peptide transporter 1 yes yes 0 0 0 0 0 9 0 1 97.104 97.104 2 0.0001101 29929 TMT1-8 93.345 69.917 11.71 10.805 6.5554 6.9882 14.468 26.237 11 11 7 7 15 25 1 1 1 1 1 1 1957.9 8842 1578 8760 13951 18194 18194 1 IFSPNVVNLTLVDLPGMTK Unmodified 2057.1231 0.12309861 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 89.251 89.251 3 1.6602E-15 27128 TMT1-8 110.44 80.864 100.95 100.39 79.855 76.757 82.505 144.75 95 102 83 76 87 138 2 2 2 2 2 2 24200 8843 68 8761 13952 18195;18196 18195 2 IFSSVQWLSGVKPVLSTK Unmodified 1975.1142 0.11424848 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 1 9 0 1 77.116 77.116 3 3.7686E-09 22461 TMT1-8 83.666 59.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8844 2594 8762 13953 18197 18197 1 IFSTALFVEHVLLGTESR Unmodified 2018.0837 0.083676635 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 91.817 91.817 3 0.0051062 28066 TMT1-8 45.704 18.055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8845 1999 8763 13954 18198 18198 1 IFSVSSPGSVIYDGK Unmodified 1554.793 0.79297392 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 8 0 1 68.093 68.093 3 0.024376 20772 TMT1-7 45.614 29.264 53.784 103.73 69.918 57.752 78.431 75.58 51 102 73 58 80 73 1 1 1 1 1 1 12179 8846 2121 8764 13955 18199 18199 1 IFTFAEK Unmodified 854.4538 0.45380487 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8 0 1 62.954 62.954 2 0.0097475 18747 TMT1-7 111.01 56.482 153.8 179.74 148.11 107.53 147.83 181.27 145 181 152 109 152 174 1 1 1 1 1 1 15485 8847 1297 8765 13956 18200 18200 1 IFTLPGDCLIYPAHDYHGFTVSTVEEER Unmodified 3265.539 0.53901443 361 O95571 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial yes yes 0 0 0 0 0 6 0 1 71.549 71.549 4 6.1318E-23 22654 TMT1-5 112.8 111.13 23.248 28.689 35.833 28.75 43.135 45.673 22 29 36 29 44 44 1 1 1 1 1 1 13117 8848 361 8766 13957 18201 18201 1 IFTPLLHQIELEKPKPIPYIYGSR Unmodified 2851.6 0.60002219 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 2 9 0 1 72.139 72.139 5 2.7945E-10 20500 TMT1-8 73.389 67.032 130.41 174.4 116.38 125.45 109.05 189.83 123 174 123 123 116 181 1 1 1 1 1 1 24996 8849 655 8767 13958 18202 18202 1 IFTSIGEDYDER Unmodified 1443.6518 0.65178899 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 3.5 0.5 1 1 61.176 61.176 2 1.2145E-25 18622 TMT1-3 203.02 153.61 115 205.65 154.72 123.12 169.63 195.57 109 203 160 124 174 188 2 2 2 2 2 2 44408 8850 1012 8768 13959;13960 18203;18204;18205 18204 3 IFTTGDVNK Unmodified 993.51311 0.51311067 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 7 0 1 51.799 51.799 2 0.00031306 14233 TMT1-6 94.692 41.976 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8851 2019 8769 13961 18206 18206 1 IFTTGDVNKDGK Unmodified 1293.6565 0.65648044 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 1 7 0 1 48.239 48.239 3 0.025306 12825 TMT1-6 54.309 31.073 107.93 183.65 99.342 157.88 124.33 158.48 102 181 109 152 131 152 1 1 1 1 1 1 7727.5 8852 2019 8770 13962 18207 18207 1 IFVDIEKLPWSK Unmodified 1473.8232 0.82315184 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 1 9 0 1 75.211 75.211 3 0.0048892 21736 TMT1-8 60.08 29.642 108.5 76.226 94.395 49.226 47.397 107.38 102 80 94 51 51 102 1 1 1 1 1 1 13641 8853 515 8771 13963 18208 18208 1 IFVEESIYDEFVR Unmodified 1644.8035 0.80353861 386 P00352 ALDH1A1 Retinal dehydrogenase 1 yes yes 0 0 0 0 0 5 0 1 80.239 80.239 2 0.00046912 25868 TMT1-4 93.345 66.247 38.32 27.801 28.197 29.624 20.866 22.857 36 29 29 29 22 22 1 1 1 1 1 1 3597.5 8854 386 8772 13964 18209 18209 1 IFVEFTSVFDCQK Unmodified 1618.7701 0.77012999 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 8 0 1 83.841 83.841 3 0.00010133 26851 TMT1-7 91.961 73.597 53.96 64.29 73.682 26.374 49.51 76.405 51 65 73 29 51 73 1 1 1 1 1 1 10547 8855 896 8773 13965 18210 18210 1 IFVFEPPPGVK Unmodified 1228.6856 0.68559572 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 9 0 1 72.469 72.469 3 0.00076606 20672 TMT1-8 79.974 54.588 46.237 111.7 69.141 65.318 85.413 75.381 44 109 73 65 87 73 1 1 1 1 1 1 10485 8856 1763 8774 13966 18211 18211 1 IFVGGIKEDTEEYNLR Unmodified 1881.9472 0.94724273 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 6 0 2 59.923 59.923 3;4 5.687E-18 18026 TMT1-5 145.69 130.6 719.13 1084.2 667.48 768.5 609.77 1136 679 1075 712 750 654 1082 3 3 3 3 3 3 139020 8857 1259 8775 13967;13968 18212;18213;18214 18212 3 IFVGGIPHNCGETELR Unmodified 1797.8832 0.88320269 2397 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 51.71 51.71 3 4.5556E-12 14202 TMT1-6 126.71 123.16 372.32 307.66 461.64 256.24 429.7 424.8 351 320 456 267 436 410 2 2 2 2 2 2 32218 8858 2397 8776 13969;13970 18215;18216 18216 2 IFVGGLNPEATEEK Unmodified 1502.7617 0.76167379 2487 Q99729-3;Q99729-2 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 0 5.67 0.471 1 2 62.848 62.848 2;3 9.3939E-34 19203 TMT1-5 194.39 158.85 292.47 379.65 295.89 245.82 346.7 357.88 276 380 306 247 354 345 3 3 3 3 3 3 52111 8859 2487 8777 13971;13972;13973 18217;18218;18219 18219 3 IFVGGLSANTVVEDVK Unmodified 1646.8879 0.88793694 2393 Q96DH6;Q96DH6-2;Q96DH6-3 MSI2 RNA-binding protein Musashi homolog 2 yes no 0 0 0 0 0 7 0 1 71.837 71.837 3 7.1043E-06 22124 TMT1-6 89.911 68.66 68.579 93.439 116.81 61.79 121.95 112.71 65 94 116 65 123 109 1 1 1 1 1 1 5679.2 8860 2393 8778 13974 18220 18220 1 IFVGGLSPDTPEEK Unmodified 1487.7508 0.75077476 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 6 0 1 62.991 62.991 3 2.0248E-10 19265 TMT1-5 122.39 88.517 185.4 341.23 289.57 281.56 209.86 335.13 176 337 299 277 224 320 1 1 1 1 1 1 68291 8861 1748 8779 13975 18221 18221 1 IFVLGPK Unmodified 772.48471 0.48471107 2087 Q7Z2Z2;Q7Z2Z2-2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 63.681 63.681 2 0.043138 17148 TMT1-8 83.229 34.987 84.502 100.49 139.78 69.166 121.87 105.25 80 102 138 73 123 102 1 1 1 1 1 1 5196.8 8862 2087 8780 13976 18222 18222 1 IFWEVFHELPLEK Unmodified 1685.8817 0.88172935 1957 Q5GLZ8-6;Q5GLZ8-3;Q5GLZ8-2;Q5GLZ8 HERC4 Probable E3 ubiquitin-protein ligase HERC4 yes no 0 0 0 0 0 8 0 1 83.937 83.937 3 0.00015237 26853 TMT1-7 89.959 68.086 38.149 34.88 50.919 44.407 34.588 29.927 36 36 51 44 36 29 1 1 1 1 1 1 6341 8863 1957 8781 13977 18223 18223 1 IFYPEIEEVQALDDTER Unmodified 2065.9844 0.9844161 1001 P33316-2;P33316 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 0 4 0 2 77.965 77.965 2;3 1.108E-09 25233 TMT1-3 104.44 83.787 30.713 28.047 44.152 36.335 20.301 30.335 29 29 44 36 22 29 1 1 1 1 1 1 8732.2 8864 1001 8782 13978;13979 18224;18225 18224 2 IFYPETTDIYDR Unmodified 1531.7195 0.71947463 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 64.263 64.263 2 6.4932E-08 19893 TMT1-3 129.28 92.169 37.79 73.815 78.312 81.461 69.756 83.289 36 73 80 80 73 80 1 1 1 1 1 1 14611 8865 1139 8783 13980 18226 18226 1 IFYPETTDIYDRK Unmodified 1659.8144 0.81443765 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 6 0 1 58.003 58.003 3 2.2442E-07 17317 TMT1-5 116.81 96.797 347.77 440.29 327.83 266.71 296.95 377.42 328 441 340 267 308 362 1 1 1 1 1 1 42374 8866 1139 8784 13981 18227 18227 1 IFYPETTDVYDR Unmodified 1517.7038 0.70382456 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 4 0 1 61.431 61.431 2 5.6938E-12 18778 TMT1-3 138.76 128.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8867 1723 8785 13982 18228 18228 1 IFYVNYLSELSEHVK Unmodified 1839.9407 0.94070079 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 75.017 75.017 3;4 1.0066E-07 23450 TMT1-7 108.34 89.014 192.54 187.12 122.96 147.84 176.34 180.45 181 190 131 145 181 174 3 3 3 3 3 3 15841 8868 1616 8786 13983;13984 18229;18230;18231 18229 3 IGAEVYHNLK Unmodified 1142.6084 0.60840804 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 5.2 2.14 1 3 1 46.948 46.948 2;3;4 3.7215E-05 12422 TMT1-6 129.7 87.723 4555.4 6921.6 5222.5 4135.8 5832.1 6295.7 4307 6876 5402 4169 5964 6062 8 8 8 8 8 8 2105200 8869 514 8787 13985;13986;13987;13988;13989 18232;18233;18234;18235;18236;18237;18238;18239 18239 8 IGAFGYMECSAK Oxidation (M) 1348.5792 0.5791581 1393 P61586 RHOA Transforming protein RhoA yes yes 0 0 1 0 0 7 0 1 53.06 53.06 3 0.0020398 14716 TMT1-6 79.201 58.82 241.26 337.58 282.43 197.42 230.94 290.82 228 337 289 200 239 279 1 1 1 1 1 1 20008 8870 1393 8788 13990 18240 18240 229 1 IGALTHK Unmodified 738.43882 0.43882351 1905 Q16775;Q16775-2;Q16775-3 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 0 0 0 8 0 1 38.96 38.96 3 0.0038802 9197 TMT1-7 97.602 34.888 235.49 351.92 339.18 313.57 384.22 393.05 223 351 347 312 394 379 1 1 1 1 1 1 17732 8871 1905 8789 13991 18241 18241 1 IGAPGVEEIK Unmodified 1011.5601 0.56006086 1836 Q15208 STK38 Serine/threonine-protein kinase 38 yes yes 0 0 0 0 0 5 0 1 52.101 52.101 2 0.00010425 14824 TMT1-4 138.98 72.354 129.97 237.94 136.05 132.63 129.78 246.81 123 234 145 131 138 235 1 1 1 1 1 1 17269 8872 1836 8790 13992 18242 18242 1 IGASTLLSDIER Unmodified 1273.6878 0.68778057 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 5 0 1 65.888 65.888 3 1.1213E-05 20206 TMT1-4 109.24 63.357 30.654 51.628 34.06 36.819 26.545 61.071 29 51 36 36 29 58 1 1 1 1 1 1 5778 8873 2982 8791 13993 18243 18243 1 IGCYVTIFQNISNLR Unmodified 1796.9243 0.92433922 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 9 0 1 82.46 82.46 3 4.8044E-65 24568 TMT1-8 225.86 198.72 123.16 136.78 104.51 103.17 110.85 167.4 116 138 109 102 116 160 2 2 2 2 2 2 93683 8874 2849 8792 13994 18244;18245 18245 2 IGDEDVGR Unmodified 859.40356 0.40356022 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 2 0.816 1 1 1 35.571 35.571 2 0.00096134 8010 TMT 1-phospho 98.458 56.806 314.77 435.75 287.44 333.02 386 528.38 297 434 305 327 401 506 2 2 2 2 2 2 86728 8875 858 8793 13995;13996;13997 18246;18247;18248;18249 18246 4 IGDELDSNMELQR Unmodified 1518.6984 0.69842161 1611 Q07812-5;Q07812-8;Q07812;Q07812-2;Q07812-7 BAX Apoptosis regulator BAX yes no 0 0 0 0 0 2 0 1 56.453 56.453 2 0.0031049 17463 TMT1-1 59.265 37.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8876 1611 8794 13998 18250 18250 1 IGDFGLATVK Unmodified 1019.5651 0.56514624 458 P10398;P04049;P04049-2;P15056 ARAF;RAF1;BRAF Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase B-raf yes no 0 0 0 0 0 8 0 1 64.322 64.322 2 0.0081998 19251 TMT1-7 86.882 68.896 139.1 159.02 110.32 111.03 81.479 128.79 131 160 116 109 87 123 1 1 1 1 1 1 10188 8877 458 8795 13999 18251 18251 1 IGDFGLVTSLK Unmodified 1148.6441 0.64412484 794 P19525-2;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 0 0 8 0 1 72.433 72.433 2 0.023462 22474 TMT1-7 69.721 38.535 46.741 42.949 42.808 44.62 48.965 67.893 44 44 44 44 51 65 1 1 1 1 1 1 3745.2 8878 794 8796 14000 18252 18252 1 IGDLGLATLK Unmodified 999.59645 0.59644637 2647 Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q96J92-2;Q9Y3S1-3;Q96J92-3;Q96J92;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1 WNK1;WNK4;WNK2 Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4;Serine/threonine-protein kinase WNK2 yes no 0 0 0 0 0 7 0 1 56.168 56.168 2 0.034928 15945 TMT1-6 68.224 6.2612 116.1 68.396 86.607 63.709 115.59 81.981 109 73 87 65 116 80 1 1 1 1 1 1 8987.8 8879 2647 8797 14001 18253 18253 1 IGDLQAFQGHGAGNLAGLK Unmodified 1865.9748 0.97479489 558 P08195-2;P08195-3;P08195;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 0 8 0 1 61.384 61.384 3 2.1003E-08 18105 TMT1-7 91.637 80.821 61.094 117.77 91.813 56.588 70.899 83.257 58 116 94 58 73 80 1 1 1 1 1 1 9665.2 8880 558 8798 14002 18254 18254 1 IGDPLLEDTR Unmodified 1127.5823 0.58225287 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 2.5 0.5 1 1 56.516 56.516 2 0.00040622 17711 TMT1-2 119.07 82.047 214.85 337.34 212.28 221.03 244.35 325.62 203 334 225 218 254 312 3 3 3 3 3 3 65925 8881 1171 8799 14003;14004 18255;18256;18257 18256 3 IGDQEFDHLPALLEFYK Unmodified 2034.0098 0.0098429899 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 6 0 2 79.93 79.93 3;4 8.9716E-14 25957 TMT1-5 120.29 95.235 215.83 328.35 237.03 211.84 247.41 248.78 204 326 247 211 254 240 3 3 3 3 3 3 71556 8882 1127 8800 14005;14006 18258;18259;18260 18259 3 IGDQEFDSLPALLEFYK Unmodified 1983.983 0.98295954 1126 P46108;P46108-2 CRK Adapter molecule crk yes no 0 0 0 0 0 6 0 1 90.83 90.83 3 0.014436 29948 TMT1-5 46.494 27.665 23.199 28.554 44.148 36.586 65.055 36.52 22 29 44 37 65 36 1 1 1 1 1 1 7223.7 8883 1126 8801 14007 18261 18261 1 IGDTSVSYK Unmodified 968.48148 0.48147619 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 5.5 0.5 1 1 45.774 45.774 2 0.00012351 12441 TMT1-5 149.57 86.008 292.02 477.68 289.32 334.21 491.29 476.34 276 472 309 330 500 460 2 2 2 2 2 2 53101 8884 816 8802 14008;14009 18262;18263 18263 2 IGDTVSFSIEAK Unmodified 1265.6503 0.65033243 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 6.4 0.49 3 2 63.264 63.264 2;3 7.2757E-56 19406 TMT1-5 238.73 179.38 1985.4 2765.7 2471.9 2085.2 2638.8 3097.1 1877 2764 2533 2088 2716 2976 9 9 9 9 9 9 556390 8885 484 8803 14010;14011;14012;14013;14014 18264;18265;18266;18267;18268;18269;18270;18271;18272;18273 18266 10 IGDTWSK Unmodified 805.39702 0.39701828 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16;P02751-2 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 49.15 49.15 2 0.0089148 13187 TMT1-6 75.213 32.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8886 442 8804 14015 18274 18274 1 IGDVVLSIDGINAQGMTHLEAQNK Unmodified 2522.2799 0.27988661 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 6 0 1 72.263 72.263 3 4.7686E-11 22921 TMT1-5 81.224 69.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8887 2411 8805 14016 18275 18275 1 IGDYVQQHGGVSLVEQLLQDPK Unmodified 2422.2492 0.24923841 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 76.72 76.72 4 3.4758E-06 24649 TMT1-5 69.259 51.316 46.722 58.006 33.236 44.9 64.38 45.067 44 58 36 44 65 44 1 1 1 1 1 1 6211.5 8888 664 8806 14017 18276 18276 1 IGEAEAAVIEAMGK Unmodified 1387.7017 0.70171607 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 5 0 1 76.489 76.489 3 1.4844E-08 24394 TMT1-4 96.059 82.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8889 1767 8807 14018 18277 18277 1 IGEEEIQKPEEK Unmodified 1427.7144 0.71438925 1860 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 1 4 0 1 44.76 44.76 3 0.0060391 12224 TMT1-3 67.952 30.397 146.25 190.93 145.42 153.7 200.59 227.73 138 191 152 152 206 219 1 1 1 1 1 1 11843 8890 1860 8808 14019 18278 18278 1 IGEEFLTDLSQLK Unmodified 1491.7821 0.78207489 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 6 0 1 84.057 84.057 3 1.4275E-11 27486 TMT1-5 145.09 103.87 100.47 129.26 136.88 93.672 106.59 90.766 95 130 138 95 109 88 2 2 2 2 2 2 19325 8891 648 8809 14020 18279;18280 18279 2 IGEEFLTDLSQLKK Unmodified 1619.877 0.8770379 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 1 7.5 0.5 1 1 76.07 76.07 3;4 2.3351E-05 23841 TMT1-7 76.759 65.815 130.53 135.88 128.4 101.63 116.93 205.6 123 138 131 102 123 196 1 1 1 1 1 1 17369 8892 648 8810 14021;14022 18281;18282 18282 2 IGEHTPSALAIMENANVLAR Unmodified 2106.0892 0.089172718 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 7 1.41 1 1 1 1 1 65.462 65.462 3 3.3747E-45 19586 TMT1-6 185.96 159.23 538.74 750.39 611.29 532.36 558.08 733.47 509 749 631 530 581 703 7 7 7 7 7 7 393050 8893 459 8811 14023;14024;14025;14026;14027 18283;18284;18285;18286;18287;18288;18289 18286 7 IGEHTPSALAIMENANVLAR Oxidation (M) 2122.0841 0.084087341 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 1 0 0 7 0 1 54.039 54.039 3 2.1905E-06 15142 TMT1-6 81.316 66.436 77.376 118.27 59.866 66.852 91.336 144.5 73 117 65 66 95 138 2 2 2 2 2 2 18297 8894 459 8811 14028 18290;18291 18291 60 2 IGEWELIQESGVPLKPLFGPGYTGIR Unmodified 2855.5222 0.5221658 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 1 8 0 1 83.454 83.454 4 1.6196E-05 26654 TMT1-7 62.051 51.793 54.147 64.809 41.84 36.054 42.542 53.152 51 65 44 36 44 51 1 1 1 1 1 1 21469 8895 1122 8812 14029 18292 18292 1 IGFGAFVDKPVSPYMYISPPEALENPCYDMK Unmodified 3534.655 0.65497216 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 8 0 2 83.462 83.462 4;5 8.0857E-20 26677 TMT1-7 99.871 89.164 285.7 454.71 288.41 264.76 234.63 580.67 270 450 304 262 255 551 5 5 5 5 5 5 44938 8896 484 8813 14030;14031 18293;18294;18295;18296;18297 18295 5 IGFGPDPTFSSCVPDPPVISEEK Unmodified 2474.1675 0.1675422 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 75.057 75.057 3;4 9.4332E-13 23841 TMT1-4 94.463 76.061 179 243.37 186.18 281.79 234.33 261.95 169 243 198 272 245 252 2 2 2 2 2 2 32315 8897 1797 8814 14032;14033 18298;18299 18298 2 IGFGPDPTFSSCVPDPPVISEEKGPCYR Unmodified 3107.4369 0.43685754 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 6 0 1 69.306 69.306 4 1.1461E-11 21722 TMT1-5 84.318 79.053 30.769 35.759 28.124 21.409 51.095 36.918 29 36 29 22 51 36 1 1 1 1 1 1 10711 8898 1797 8815 14034 18300 18300 1 IGFLGLGLMGSGIVSNLLK Unmodified 1888.0856 0.08559089 1936 Q49A26-5;Q49A26-2;Q49A26-3;Q49A26;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 0 9 0 1 100.55 100.55 3 4.3719E-12 31284 TMT1-8 103.13 62.554 31.882 36.876 20.487 21.179 29.374 30.076 30 37 22 21 30 29 2 2 2 2 2 2 2136.7 8899 1936 8816 14035 18301;18302 18302 2 IGFPSTTPAK Unmodified 1017.5495 0.54949617 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 8 0 1 52.199 52.199 3 0.0011954 14474 TMT1-7 61.56 45.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8900 965 8817 14036 18303 18303 1 IGFPWSEIR Unmodified 1103.5764 0.57637963 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 0 6 3.56 1 1 1 69.412 69.412 2 1.9327E-31 19312 TMT1-8 221.7 127.44 2913.1 4302.5 3224.5 2664 3479.5 3944 2753 4279 3342 2673 3573 3793 5 5 5 5 5 5 669830 8901 894;720;1015 8818 14037;14038;14039 18304;18305;18306;18307;18308 18307 5 IGFQSLIQK Unmodified 1032.5968 0.59678072 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 9 0 1 64.559 64.559 2 0.012661 17526 TMT1-8 89.08 36.294 37.378 142.82 89.021 88.219 83.297 106.36 36 138 94 87 87 102 1 1 1 1 1 1 6837.4 8902 2596 8819 14040 18309 18309 1 IGFVGFPSVGK Unmodified 1106.6124 0.61243078 2961 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 0 9 0 1 69.653 69.653 3 0.00076606 19532 TMT1-8 79.974 34.662 77.538 102.53 45.99 59.464 63.197 60.025 73 102 51 58 65 58 1 1 1 1 1 1 5020.1 8903 2961 8820 14041 18310 18310 1 IGGDAGTSLNSNDYGYGGQK Unmodified 1972.8763 0.87626263 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 5 0 1 51.907 51.907 3 4.6756E-10 14775 TMT1-4 98.169 73.631 38.08 58.431 42.66 28.072 57.568 52.723 36 58 44 29 58 51 1 1 1 1 1 1 9401.8 8904 2361 8821 14042 18311 18311 1 IGGIFAFK Unmodified 851.49052 0.49052473 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 0 9 0 1 69.753 69.753 2 0.0039983 19620 TMT1-8 129.96 91.639 237.99 387.29 249.42 240.29 380.96 372.89 225 383 263 240 387 360 2 2 2 2 2 2 46675 8905 844 8822 14043 18312;18313 18313 2 IGGIGTVPVGR Unmodified 1024.6029 0.60292873 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 50.897 50.897 2 1.5915E-07 12025 TMT1-8 134.77 79.989 2278 3517.8 2063.7 2162 2755.1 3384.8 2151 3483 2202 2138 2840 3249 5 5 5 5 5 5 551680 8906 1490 8823 14044;14045;14046;14047 18314;18315;18316;18317;18318 18318 5 IGGILANELSVDEAALHAAVIAINEAIDRR Unmodified 3113.6833 0.6833109 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 8 0 1 100.69 100.69 4 8.4672E-06 32787 TMT1-7 54.744 52.43 7.4673 6.9198 1.4757 5.2866 4.8088 5.1928 7 7 2 5 5 5 1 1 1 1 1 1 1119.9 8907 1139 8824 14048 18319 18319 1 IGGILANELSVDEAALHAAVIAINEAVEK Unmodified 2929.5761 0.57605186 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 7.33 0.471 2 1 104.18 104.18 4 5.8917E-31 33561 TMT1-6 123.79 106 44.534 80.326 43.473 44.596 48.102 62.587 42 79 46 44 50 60 5 7 6 7 7 7 6050.1 8908 1723 8825 14049;14050;14051 18320;18321;18322;18323;18324;18325;18326 18322 7 IGGNEGIDVPIPR Unmodified 1335.7147 0.71466402 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 59.01 59.01 2 3.3214E-09 17443 TMT1-4 129.34 103.3 84.151 200.97 113.63 156.47 153.71 157.65 80 196 123 152 159 152 2 2 2 2 2 2 24858 8909 2361 8826 14052;14053 18327;18328 18328 2 IGGVQQDTILAEGLHFR Unmodified 1852.9795 0.97954591 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 6 0 1 63.232 63.232 3 1.64E-06 19347 TMT1-5 90.89 75.932 92.173 107.98 106.4 103.06 110.6 174.87 87 109 109 102 116 167 1 1 1 1 1 1 38044 8910 2479 8827 14054 18329 18329 1 IGHGFALSK Unmodified 928.51305 0.51305109 2798 Q9NZK5;Q9NZK5-2 CECR1 Adenosine deaminase CECR1 yes no 0 0 0 0 0 9 0 1 45.782 45.782 3 0.0028178 10134 TMT1-8 77.732 40.541 115.14 198.48 137.84 147.35 155.18 157.6 109 196 145 145 160 152 1 1 1 1 1 1 9315.2 8911 2798 8828 14055 18330 18330 1 IGHPAPNFK Unmodified 979.52395 0.52395013 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 8 0 1 38.872 38.872 2 0.0019805 9166 TMT1-7 108.92 89.83 68.801 86.502 85.353 72.831 99.453 113.36 65 87 87 73 102 109 1 1 1 1 1 1 8666.7 8912 1606 8829 14056 18331 18331 1 IGHYILGDTLGVGTFGK Unmodified 1746.9305 0.93047046 1673 Q13131;Q13131-2 PRKAA1 5'-AMP-activated protein kinase catalytic subunit alpha-1 yes no 0 0 0 0 0 9 0 1 68.027 68.027 3 2.0542E-13 18896 TMT1-8 95.236 70.222 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8913 1673 8830 14057 18332 18332 1 IGIAAQMLGLAQGCFDYTIPYIK Unmodified 2542.2964 0.2963883 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 96.709 96.709 4 0.029728 29789 TMT1-8 28.765 15.31 23.244 28.678 36.512 13.522 37.055 29.857 22 29 36 15 37 29 1 1 1 1 1 1 3519.4 8914 1120 8831 14058 18333 18333 1 IGIEIIK Unmodified 784.50584 0.50584045 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 61.806 61.806 2 0.0099031 18221 TMT1-6 110.35 11.177 985.94 1468.1 1125.6 842.47 1384.8 1494.5 932 1460 1161 856 1410 1439 2 2 2 2 2 2 153050 8915 638 8832 14059 18334;18335 18335 2 IGIEIIKR Unmodified 940.60695 0.60695147 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 8.5 0.5 1 1 51.643 51.643 3 0.0075172 12345 TMT1-8 88.948 9.0415 379.77 499.07 310.67 302.01 333.94 562.91 358 498 329 299 351 537 2 2 2 2 2 2 60674 8916 638 8833 14060;14061 18336;18337 18337 2 IGIFGQDEDVTSK Unmodified 1407.6882 0.6881745 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 5.5 0.5 1 1 62.493 62.493 2;3 2.9071E-07 19047 TMT1-5 95.401 68.728 372.97 434.82 426.42 365.45 313.15 504.88 352 439 435 363 332 482 1 1 1 1 1 1 33684 8917 748 8834 14062;14063 18338;18339 18339 2 IGIIGGTGLDDPEILEGR Unmodified 1823.9629 0.9628928 1672 Q13126-4;Q13126;Q13126-3;Q13126-2;Q13126-7;Q13126-6;Q13126-5 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 0 4.33 0.471 2 1 75.102 75.102 2;3 1.3836E-19 23802 TMT1-4 138.05 138.05 61.191 119.12 74.393 105.77 68.345 91.858 58 117 80 102 73 88 3 3 3 3 3 3 37959 8918 1672 8835 14064;14065;14066 18340;18341;18342 18342 3 IGIMPGHIHK Unmodified 1101.6117 0.61171928 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 9 0 1 41.64 41.64 4 0.016803 8657 TMT1-8 47.938 19.539 46.525 81.202 46.691 75.97 55.109 60.255 44 80 51 73 58 58 1 1 1 1 1 1 4013.9 8919 1285 8836 14067 18343 18343 1 IGITNHDEYSLVR Unmodified 1515.7682 0.76815616 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 2.45 1 2 2 1 1 48.365 48.365 2;3 1.3124E-47 13320 TMT1-4 228.28 190.12 1155 1459.6 1207.7 1129.4 1443.5 1626 1090 1464 1249 1124 1483 1564 7 7 7 7 7 7 1016200 8920 3010 8837 14068;14069;14070;14071;14072;14073;14074 18344;18345;18346;18347;18348;18349;18350 18345 7 IGIVGLPNVGK Unmodified 1065.6546 0.65462995 2745 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 9 0 1 65.611 65.611 3 0.0054792 18001 TMT1-8 61.78 37.444 139.53 97.589 91.599 79.707 120.87 120.21 131 102 94 80 123 116 1 1 1 1 1 1 26032 8921 2745 8838 14075 18351 18351 1 IGKPAPDFK Unmodified 971.54402 0.54401687 989 P32119;P32119-2 PRDX2 Peroxiredoxin-2 yes no 0 0 0 0 1 8 0 1 45.823 45.823 4 0.023542 11977 TMT1-7 57.598 36.092 169.55 175.54 208.61 162.11 192.45 149.08 160 179 210 163 196 145 1 1 1 1 1 1 11717 8922 989 8839 14076 18352 18352 1 IGLADYALESGGASVISTR Unmodified 1878.9687 0.96870646 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 6 0 1 69.742 69.742 3 3.4093E-18 21922 TMT1-5 127.97 110.83 84.59 132.04 98.155 86.663 137.06 96.293 80 131 102 87 138 94 2 2 2 2 2 2 20259 8923 2859 8840 14077 18353;18354 18353 2 IGLDLPALNMQR Unmodified 1339.7282 0.7282056 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 8 0 1 70.429 70.429 2 7.3804E-07 21662 TMT1-7 118.03 89.859 122.19 275.47 150.12 131.51 145 231.45 116 269 160 131 152 221 1 1 1 1 1 1 37301 8924 489 8841 14078 18355 18355 1 IGLFADIELSR Unmodified 1232.6765 0.6764876 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 7 0 1 74.787 74.787 2 0.008842 23243 TMT1-6 79.311 62.853 99.331 184.2 101.15 117.51 172.78 111.26 94 181 109 116 174 109 2 2 2 2 2 2 17257 8925 690;691 8842 14079 18356;18357 18356 2 IGLFGGAGVGK Unmodified 974.55492 0.5549159 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 9 0 1 61.877 61.877 3 0.00032925 16517 TMT1-8 85.377 21.812 202.51 523.55 325.16 255.19 394.74 530.26 193 510 341 258 406 508 1 1 1 1 1 1 76433 8926 508 8843 14080 18358 18358 1 IGLIQFCLSAPK Unmodified 1345.7428 0.74279303 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 9 0 2 74.209 74.209 2;3 4.2725E-17 21331 TMT1-8 176.65 122.1 353.88 379.56 435.64 259.48 397.44 445.97 334 386 436 268 406 429 5 5 5 5 5 5 42542 8927 1233 8844 14081;14082 18359;18360;18361;18362;18363 18362 5 IGLVEALCGFQFTFK Unmodified 1728.8909 0.89091383 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 9 0 1 90.991 90.991 3 3.1715E-16 27821 TMT1-8 124.45 98.323 68.857 94.214 69.333 82.016 68.667 114.23 65 94 73 80 73 109 1 1 1 1 1 1 18396 8928 245 8845 14083 18364 18364 1 IGNCPFSQR Unmodified 1077.5026 0.50256276 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 8 0.816 1 1 1 41.805 41.805 2 0.00015392 10321 TMT1-6 148.14 87.555 362.38 428.4 407.34 293.49 480.41 421.22 342 432 414 299 486 408 4 4 4 4 4 4 106240 8929 59 8846 14084;14085;14086 18365;18366;18367;18368 18365 4 IGNFLNYGSHTGDADGFK Unmodified 1911.8751 0.87514042 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 7 0 1 61.871 61.871 3 1.0067E-24 18210 TMT1-6 142.26 134.72 192.23 186.26 175.88 175.54 221.37 202.62 181 190 181 174 226 196 1 1 1 1 1 1 28423 8930 1916 8847 14087 18369 18369 1 IGNFSTDIK Unmodified 993.51311 0.51311067 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 7 0 1 55.331 55.331 2 4.9614E-05 15581 TMT1-6 153.05 122.79 1070.3 1764.8 1308.2 1168.8 1647 1555.2 1013 1747 1360 1169 1677 1503 2 2 2 2 2 2 147170 8931 690 8848 14088 18370;18371 18370 2 IGNFSTDIKDSK Unmodified 1323.667 0.66704513 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 1 7.5 0.5 1 1 52.217 52.217 3 0.00062887 14411 TMT1-6 88.311 60.663 1453 2551 1423.7 1334 1559.3 2337 1374 2512 1519 1325 1626 2234 3 3 3 3 3 3 220430 8932 690 8849 14089;14090 18372;18373;18374 18373 3 IGNSYFK Unmodified 827.41775 0.41775372 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 8 0 1 49.559 49.559 2 0.038594 13449 TMT1-7 86.833 47.17 200.8 187.8 176.42 160.3 216.24 250.74 189 192 181 160 222 241 1 1 1 1 1 1 16198 8933 986 8850 14091 18375 18375 1 IGNSYFKEEK Unmodified 1213.5979 0.59790293 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 7 0 1 46.016 46.016 3 0.0041112 11970 TMT1-6 81.625 50.797 335.61 705.95 524.7 421.57 679.41 912.3 319 693 543 426 698 874 1 1 1 1 1 1 38524 8934 986 8851 14092 18376 18376 1 IGNTEDGAPHKEDEPSVGQVAR Unmodified 2305.0935 0.093466053 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 1 3 0 1 39.275 39.275 4 7.4138E-09 11039 TMT1-2 81.12 69.977 54.175 49.776 49.96 44.055 56.32 67.683 51 51 51 44 58 65 1 1 1 1 1 1 10487 8935 2594 8852 14093 18377 18377 1 IGNTGGMLDNILASK Unmodified 1502.7763 0.776278 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 8 0 1 71.845 71.845 2 3.2411E-14 22192 TMT1-7 132.86 103.05 37.887 50.341 81.842 33.821 34.525 45.919 36 51 80 36 36 44 1 1 1 1 1 1 8696.4 8936 1283 8853 14094 18378 18378 1 IGPEPTTDSFIAVMHGPTEGVVPGNALVVDPR Unmodified 3271.6547 0.65471289 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 74.921 74.921 4 0.00060102 23957 TMT1-5 41.209 29.792 30.615 59.074 34.291 21.608 20.978 30.315 29 58 36 22 22 29 1 1 1 1 1 1 16712 8937 2654 8854 14095 18379 18379 1 IGPEPTTDSFIAVMQGDMEGIIPGNALVVDPK Unmodified 3310.6465 0.64651597 2802 Q9NZN3;Q9NZN3-2 EHD3 EH domain-containing protein 3 yes no 0 0 0 0 0 6 0 1 96.226 96.226 4 7.8466E-05 31815 TMT1-5 50.757 38.792 15.79 45.539 12.727 15.522 6.0658 15.817 15 44 15 15 7 15 1 1 1 1 1 1 5279.3 8938 2802 8855 14096 18380 18380 1 IGPILDNSTLQSEVKPILEK Unmodified 2193.2256 0.22564942 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 1 7 0 1 73.424 73.424 4 1.079E-17 22802 TMT1-6 122.57 105.2 238.85 265.58 207.42 229.67 206.81 310.7 225 268 217 225 218 297 2 2 2 2 2 2 34222 8939 956 8856 14097 18381;18382 18382 2 IGPITPLEFYR Unmodified 1304.7129 0.71287311 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 8 0 1 71.07 71.07 2 1.3318E-05 21873 TMT1-7 123.63 90.626 238.56 304.71 222.47 203.54 270.06 270.52 225 305 232 203 276 261 2 2 2 2 2 2 46345 8940 1739 8857 14098 18383;18384 18383 2 IGPLGLSPK Unmodified 880.5382 0.53820321 951 P30050 RPL12 60S ribosomal protein L12 yes yes 0 0 0 0 0 9 0 1 58.677 58.677 3 0.00040576 15140 TMT1-8 107.9 76.135 215.14 316.54 182.46 214.12 299.09 294.21 203 314 196 211 305 284 2 2 2 2 2 2 24118 8941 951 8858 14099 18385;18386 18385 2 IGPSILNSDLANLGAECLR Unmodified 2012.0361 0.036074515 2364 Q96AT9-4;Q96AT9-2;Q96AT9 RPE Ribulose-phosphate 3-epimerase yes no 0 0 0 0 0 7 0 1 76.512 76.512 3 1.0312E-06 24023 TMT1-6 83.666 70.629 62.644 56.424 63.656 66.728 85.898 59.377 59 58 65 66 87 58 2 2 2 2 2 2 11221 8942 2364 8859 14100 18387;18388 18388 2 IGQETDKTTTR Unmodified 1248.631 0.63099397 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 1 5 0 1 31.242 31.242 3 0.0073553 6586 TMT1-4 71.208 52.242 77.24 109.25 90.51 95.486 98.961 97.38 73 109 94 94 102 94 1 1 1 1 1 1 6189.6 8943 2963 8860 14101 18389 18389 1 IGQGASGTVFTATDVALGQEVAIK Unmodified 2332.2274 0.22744034 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 6 0 1 73.543 73.543 3 2.1838E-09 23439 TMT1-5 80.786 56.498 30.806 28.307 28.21 29.5 27.395 46.122 29 29 29 29 29 44 1 1 1 1 1 1 6383.9 8944 1680 8861 14102 18390 18390 1 IGQGYLIK Unmodified 890.52255 0.52255314 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 8 0 1 55.078 55.078 2 0.0050787 15581 TMT1-7 120.49 46.05 172.18 929 570.79 586.51 887.28 791.24 168 893 604 583 900 766 2 2 2 2 2 2 123410 8945 1061 8862 14103 18391;18392 18391 2 IGQLEEQLEQEAK Unmodified 1513.7624 0.76240208 1020 P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 0 4 0 1 66.784 66.784 3 0.0074448 20871 TMT1-3 41.378 21.638 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8946 1020 8863 14104 18393 18393 1 IGQTSSSVSFK Unmodified 1139.5823 0.58225287 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 8 0 1 48.311 48.311 3 5.1313E-05 12892 TMT1-7 105.17 67.979 248.07 297.17 253.61 169.36 303.44 257.84 234 299 259 174 306 250 1 1 1 1 1 1 29823 8947 758 8864 14105 18394 18394 1 IGQVHYALETTVK Unmodified 1457.7878 0.78782897 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 0 7 0 1 51.08 51.08 3 0.00010723 13967 TMT1-6 91.62 82.087 92.348 108.47 76.691 65 78.391 67.053 87 109 80 65 80 65 1 1 1 1 1 1 9416.6 8948 2882 8865 14106 18395 18395 1 IGSNYSVK Unmodified 866.44978 0.44978213 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 7 0 1 43.273 43.273 2 0.0054434 10833 TMT1-6 117.89 86.6 191.86 228.42 201.13 159.22 195.51 276.91 181 230 206 160 203 265 1 1 1 1 1 1 23498 8949 3063 8866 14107 18396 18396 1 IGSSLYALGTQDSTDICK Unmodified 1927.9197 0.91970735 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 6 0 1 65.455 65.455 3 3.6898E-15 20262 TMT1-5 128.59 110.49 37.95 58.071 64.744 42.883 71.786 75.77 36 58 65 44 73 73 1 1 1 1 1 1 11393 8950 2928 8867 14108 18397 18397 1 IGSTIFGER Unmodified 978.51345 0.51344502 329 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 0 7 0 1 53.867 53.867 2 0.0032358 15050 TMT1-6 72.042 43.868 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8951 329 8868 14109 18398 18398 1 IGTDIQDNK Unmodified 1002.4982 0.49818889 702 P14324-2;P14324 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 0 5 0 1 43.918 43.918 2 0.0014309 11602 TMT1-4 81.099 39.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8952 702 8869 14110 18399 18399 1 IGTQQDSIAIFSPTHGMVIR Unmodified 2170.1205 0.12047285 1872 Q15762 CD226 CD226 antigen yes yes 0 0 0 0 0 8 0 1 62.822 62.822 3 2.3609E-13 18647 TMT1-7 106.39 85.14 30.685 44.158 35.207 21.13 43.485 45.663 29 44 36 22 44 44 1 1 1 1 1 1 14215 8953 1872 8870 14111 18400 18400 1 IGTVMTFL Unmodified 880.47283 0.47282576 948 P30046 DDT D-dopachrome decarboxylase yes yes 0 0 0 0 0 8.5 0.5 1 1 87.676 87.676 2 0.0033296 26415 TMT1-8 131.65 131.65 92.467 93.688 69.19 83.242 62.051 92.037 87 95 73 81 66 88 3 3 3 3 3 3 27093 8954 948 8871 14112;14113 18401;18402;18403 18402 3 IGVAIGDQILDLSIIK Unmodified 1666.9869 0.9869227 751 P16930 FAH Fumarylacetoacetase yes yes 0 0 0 0 0 8 0 1 89.792 89.792 3 1.0484E-05 29017 TMT1-7 88.73 52.993 46.574 50.04 64.836 50.673 64.114 45.074 44 51 65 51 65 44 1 1 1 1 1 1 10176 8955 751 8872 14114 18404 18404 1 IGVDEFSTLVAES Unmodified 1365.6664 0.66637643 811 P20472 PVALB Parvalbumin alpha yes yes 0 0 0 0 0 4 0 1 82.652 82.652 2 8.2148E-08 27045 TMT1-3 104.17 70.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8956 811 8873 14115 18405 18405 1 IGVFLCGPEALAETLSK Unmodified 1803.9441 0.94407161 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 8.33 0.471 2 1 87.918 87.918 2;3 1.5305E-14 26456 TMT1-8 119.31 89.983 152.86 264.56 233.16 197.47 152.35 267.48 145 262 239 196 160 255 5 5 5 5 4 5 38717 8957 477 8874 14116;14117;14118 18406;18407;18408;18409;18410 18409 5 IGVITNR Unmodified 771.46029 0.46028724 1440 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 0 8 0 1 41.508 41.508 2 0.0080481 10222 TMT1-7 120.52 62.327 422.06 513.81 403.84 420.3 490.34 662.92 398 516 421 415 509 635 1 1 1 1 1 1 36991 8958 1440 8875 14119 18411 18411 1 IGVNQPK Unmodified 754.43374 0.43373813 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 7 0 1 38.47 38.47 2 0.013106 8919 TMT1-6 102.98 54.738 146.28 148.94 174.9 82.834 97.418 159.25 138 152 174 87 102 152 1 1 1 1 1 1 23847 8959 1504 8876 14120 18412 18412 1 IGWPNAPILIQDFETLPR Unmodified 2079.1153 0.11531111 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 2 89.195 89.195 3;4 1.9223E-43 28860 TMT1-7 200.77 164.18 137.68 136.2 189.48 138.14 132.53 159.32 130 139 189 139 138 153 4 3 4 4 4 4 71290 8960 471 8877 14121;14122 18413;18414;18415;18416 18414 4 IGYLGAMLLLDER Unmodified 1462.7854 0.78538612 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 8 0 1 85.312 85.312 3 2.1401E-06 27336 TMT1-7 113.77 88.913 7.3488 6.5901 21.677 13.756 13.513 14.538 7 7 21 14 14 14 1 1 1 1 1 1 3489.1 8961 199 8878 14123 18417 18417 1 IGYPHLQEVLQSHGPPTHR Unmodified 2165.113 0.1130197 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 7 0 1 45.914 45.914 5 0.0097017 11899 TMT1-6 40.616 27.442 92.183 123.12 92.031 40.974 86.825 66.812 87 123 94 44 87 65 1 1 1 1 1 1 5587.7 8962 2061 8879 14124 18418 18418 1 IHAEFVQQK Unmodified 1098.5822 0.58219329 793 P19474 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes yes 0 0 0 0 0 6 0 1 40.474 40.474 3 7.6327E-05 10370 TMT1-5 106.42 80.864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8963 793 8880 14125 18419 18419 1 IHAENAIR Unmodified 922.49846 0.49846366 2084 Q7LBR1 CHMP1B Charged multivesicular body protein 1b yes yes 0 0 0 0 0 4.5 0.5 1 1 28.594 28.594 3 0.00023701 5818 TMT1-3 143.89 83.529 77.673 64.052 55.905 58.735 70.544 90.729 73 66 58 58 73 87 2 2 2 2 2 2 9295.4 8964 2084 8881 14126;14127 18420;18421 18420 2 IHAGPITK Unmodified 835.49159 0.49158736 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 8 0 1 37.083 37.083 3 0.0058802 8468 TMT1-7 81.548 56.625 333.51 318.41 484.18 250.19 331.09 410.56 315 328 477 261 341 394 1 1 1 1 1 1 36998 8965 1437 8882 14128 18422 18422 1 IHALGPNYNLVISDLR Unmodified 1793.9788 0.97881763 2877 Q9UIB8-3;Q9UIB8-2;Q9UIB8;Q9UIB8-6;Q9UIB8-5;Q9UIB8-4 CD84 SLAM family member 5 yes no 0 0 0 0 0 8 0 1 61.761 61.761 3 1.6482E-09 18200 TMT1-7 115.8 97.344 192.48 145.93 168.36 58.572 129.67 135.95 181 152 167 65 131 131 1 1 1 1 1 1 60796 8966 2877 8883 14129 18423 18423 1 IHDPQLLTER Unmodified 1220.6513 0.65133548 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 40.944 40.944 3 3.8616E-06 10646 TMT1-3 151.83 117.02 84.575 108.25 120.93 117.48 111.55 127.94 80 109 123 116 116 123 2 2 2 2 2 2 31378 8967 714 8884 14130 18424;18425 18424 2 IHDVLCK Unmodified 883.45857 0.45857268 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 43.158 43.158 3 0.0086098 10815 TMT1-6 84.244 49.419 107.86 144.61 143.21 100.15 148.68 166.32 102 145 145 102 152 160 1 1 1 1 1 1 9278.8 8968 1101 8885 14131 18426 18426 1 IHEGCEEPATHNALAK Unmodified 1775.8261 0.82608174 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4 0 1 33.97 33.97 4 5.45E-12 7878 TMT1-3 125.22 120.11 439.64 558.21 477.69 473.96 425.63 526.18 415 560 494 467 445 505 2 2 2 2 2 2 106280 8969 1540 8886 14132 18427;18428 18427 2 IHETNLK Unmodified 853.46577 0.46576654 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 6 0 1 33.396 33.396 3 0.0002497 7562 TMT1-5 94.662 46.489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8970 2492 8887 14133 18429 18429 1 IHFHNLQGEK Unmodified 1221.6255 0.62545508 2246 Q8TC12;Q8TC12-2 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 7 0 1 37.431 37.431 4 0.00010896 8533 TMT1-6 108.98 86.291 532.7 638.62 638.79 527.63 606.08 773.68 503 644 650 528 628 742 2 2 2 2 2 2 36524 8971 2246 8888 14134 18430;18431 18430 2 IHFIAPK Unmodified 824.49086 0.49085908 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 0 9 0 1 45.943 45.943 3 0.0088585 10173 TMT1-8 77.748 27.935 196.12 389.01 251.89 284.47 232.42 375 186 382 267 278 247 358 1 1 1 1 1 1 25901 8972 1069 8889 14135 18432 18432 1 IHFPLATYAPVISAEK Unmodified 1755.956 0.95595693 1491;2068;1492;2510;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 0 0 0 0 0 6.75 3.34 1 1 2 67.08 67.08 3;4 8.521E-32 18330 TMT1-8 177.88 142.97 3531.9 4335 3434.3 2965.9 3324.2 4772.5 3331 4352 3553 2958 3465 4566 12 12 12 12 12 12 719980 8973 622;1491;2068;2510;1492 8890 14136;14137;14138;14139 18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444 18441 12 IHFPLVTYAPIISAEK Unmodified 1798.0029 0.0029071185 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 0 9 0 1 71.182 71.182 4 5.1025E-09 20153 TMT1-8 108.71 89.88 177.59 214.44 267.54 170.5 198.8 257.63 168 217 267 174 206 247 1 1 1 1 1 1 31553 8974 2783 8891 14140 18445 18445 1 IHFVPGWDCHGLPIEIK Unmodified 2017.0244 0.024387617 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 8 0 1 65.769 65.769 4 4.1131E-05 19836 TMT1-7 78.285 62.401 53.929 72.836 71.776 57.641 78.437 75.58 51 73 73 58 80 73 1 1 1 1 1 1 11798 8975 2741 8892 14141 18446 18446 1 IHGVGFK Unmodified 756.42826 0.42825883 1456 P62899-3;P62899;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 0 8.5 0.5 1 1 40.513 40.513 3 0.0021716 8319 TMT1-8 102.98 69.242 469.32 1018.5 509.22 575.81 837.94 750.01 445 995 553 569 851 726 2 2 2 2 2 2 49562 8976 1456 8893 14142;14143 18447;18448 18448 2 IHGVGFKK Unmodified 884.52322 0.52322184 1456 P62899-3;P62899;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 1 9 0 1 38.257 38.257 4 0.0052205 7518 TMT1-8 66.682 32.944 99.587 138.5 96.936 103.64 110.06 189.81 94 138 102 102 116 181 1 1 1 1 1 1 5287.3 8977 1456 8894 14144 18449 18449 1 IHHPSLPASGR Unmodified 1170.6258 0.62578944 152 O15533-2;O15533;O15533-3;O15533-4 TAPBP Tapasin yes no 0 0 0 0 0 7 0 1 28.311 28.311 4 0.00041277 5076 TMT1-6 91.636 66.798 15.817 29.427 21.706 5.6781 36.113 37.346 15 29 22 7 36 36 1 1 1 1 1 1 1984.1 8978 152 8895 14145 18450 18450 1 IHIDLPNEQAR Unmodified 1304.6837 0.68369824 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 5 0 1 47.193 47.193 3 0.0053362 12859 TMT1-4 67.08 56.47 61.264 141.99 42.636 83.456 76.737 90.552 58 138 51 80 80 87 1 1 1 1 1 1 13897 8979 1437 8896 14146 18451 18451 1 IHIPGGLSPESK Unmodified 1233.6717 0.67173657 1345 P57772-2;P57772 EEFSEC Selenocysteine-specific elongation factor yes no 0 0 0 0 0 7 0 1 49.971 49.971 3 0.029614 13488 TMT1-6 48.568 30.902 114.93 262.65 118.46 155.77 175.86 183.66 109 256 131 152 181 177 1 1 1 1 1 1 8985.5 8980 1345 8897 14147 18452 18452 1 IHLAQSLHK Unmodified 1045.6033 0.60326308 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 9 0 1 39.082 39.082 4 0.0037397 7829 TMT1-8 68.016 24.574 53.834 95.238 68.701 96.526 112.77 120.44 51 94 73 94 116 116 1 1 1 1 1 1 7148.6 8981 1310 8898 14148 18453 18453 1 IHLFDIDVPGK Unmodified 1252.6816 0.68157298 2714 Q9NQR4 NIT2 Omega-amidase NIT2 yes yes 0 0 0 0 0 7 0 1 65.961 65.961 3 3.4594E-05 19774 TMT1-6 109.42 86.502 53.827 103.85 62.636 26.742 64.958 52.512 51 102 65 29 65 51 1 1 1 1 1 1 9179.8 8982 2714 8899 14149 18454 18454 1 IHLFSMAFR Unmodified 1120.5852 0.58517017 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 60.554 60.554 3 0.0081159 15946 TMT1-8 60.828 19.799 30.603 51.486 42.738 36.513 73.435 36.281 29 51 44 37 73 36 1 1 1 1 1 1 4831.4 8983 2066 8900 14150 18455 18455 1 IHLISTQSAIPYALR Unmodified 1681.9515 0.95154025 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5 4 1 1 60.071 60.071 3 2.5722E-31 15517 TMT1-8 178.51 148.57 599.35 850.45 618.8 586.41 740.56 799.69 566 847 646 583 760 770 5 5 5 5 5 5 523010 8984 439 8901 14151;14152 18456;18457;18458;18459;18460 18459 5 IHLQLWDTAGQER Unmodified 1565.795 0.79503961 1239 P51159-2;P51159 RAB27A Ras-related protein Rab-27A yes no 0 0 0 0 0 7 0 1 55.728 55.728 3 0.0069541 15751 TMT1-6 60.196 22.201 92.011 131.27 114.02 70.846 114.2 112.94 87 131 116 73 116 109 1 1 1 1 1 1 19916 8985 1239 8902 14153 18461 18461 1 IHMGSCAENTAK Unmodified 1317.5806 0.58055508 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 6 0 1 34.348 34.348 3 0.014161 7967 TMT1-5 54.27 37.696 38.194 35.004 43.33 44.574 49.736 45.485 36 36 44 44 51 44 1 1 1 1 1 1 4571.6 8986 878 8903 14154 18462 18462 1 IHNFGLIQEK Unmodified 1197.6506 0.6506072 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 49.625 49.625 3 0.0038997 13411 TMT1-7 75.819 38.639 222.59 323.41 187.03 149.91 270.16 369.65 210 321 198 152 277 354 1 1 1 1 1 1 64222 8987 1194 8904 14155 18463 18463 1 IHPELLAK Unmodified 919.5491 0.54910224 2814 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 0 7 0 1 46.754 46.754 3 0.0027496 12236 TMT1-6 94.302 58.947 99.219 168.77 133.16 124.15 125.08 181.91 94 167 138 123 131 174 1 1 1 1 1 1 9107.6 8988 2814 8905 14156 18464 18464 1 IHPQTIIAGWR Unmodified 1290.7197 0.71968982 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 9 0 1 51.688 51.688 3 0.01495 12529 TMT1-8 52.693 31.992 30.027 96.293 101.59 63.816 62.447 76.036 29 94 102 65 65 73 1 1 1 1 1 1 22052 8989 1504 8906 14157 18465 18465 1 IHPTSVISGYR Unmodified 1228.6564 0.65642086 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 9 0 1 41.06 41.06 3 0.00037317 8482 TMT1-8 84.507 62.169 77.42 117.31 53.405 43.155 93.248 90.081 73 116 58 44 94 87 1 1 1 1 1 1 9245.7 8990 770 8907 14158 18466 18466 1 IHPVASK Unmodified 750.43882 0.43882351 644 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 0 8 0 1 31.473 31.473 3 0.0052762 6348 TMT1-7 57.281 33.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8991 644 8908 14159 18467 18467 1 IHPVSTMVK Unmodified 1010.5583 0.55828672 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 8.5 0.5 1 1 40.582 40.582 3 7.6647E-05 9830 TMT1-7 138.98 96.377 1241.2 1974.6 1432 1293.4 1777.9 1996 1174 1957 1492 1292 1822 1920 2 2 2 2 2 2 212810 8992 527 8909 14160;14161 18468;18469 18468 2 IHPVSTMVK Oxidation (M) 1026.5532 0.55320134 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 0 9 0 2 39.811 39.811 3 0.029332 6789 TMT1-8 52.49 21.261 46.588 61.951 52.365 47.398 45.308 48.809 44 62 54 47 47 47 1 1 1 1 1 1 4654 8993 527 8909 14162;14163 18470;18471 18471 84 2 IHQETFGK Unmodified 958.48723 0.48723027 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 6 0 1 36.624 36.624 3 0.014215 8811 TMT1-5 68.016 43.241 122.78 198.33 116.01 102.33 119.02 143.71 116 196 123 102 123 138 1 1 1 1 1 1 15017 8994 1850 8910 14164 18472 18472 1 IHQIEYAMEAVK Unmodified 1430.7228 0.72278587 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 6 0 1 57.992 57.992 3 6.5465E-06 17287 TMT1-5 112.5 84.835 122.68 119.27 199.31 112.02 153.66 157.65 116 123 196 116 157 152 1 1 1 1 1 1 25995 8995 890 8911 14165 18473 18473 1 IHSEIVK Unmodified 824.4756 0.47560295 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 6 0 1 36.065 36.065 3 0.0025927 8571 TMT1-5 102.77 39.467 169.57 211.2 175.2 183.97 181.7 219.74 160 212 182 181 189 211 1 1 1 1 1 1 58669 8996 648 8912 14166 18474 18474 1 IHSQEEALR Unmodified 1081.5516 0.55162144 88 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 0 0 0 3 0 1 28.285 28.285 3 0.0015792 6660 TMT1-2 63.184 23.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8997 88 8913 14167 18475 18475 1 IHTDFEK Unmodified 888.43413 0.43413207 2745 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 5 0 1 39.861 39.861 3 0.00043344 9920 TMT1-4 143 82.205 321.24 501.39 408.2 326.26 362.83 420.31 304 498 420 327 375 404 2 2 2 2 2 2 31026 8998 2745 8914 14168 18476;18477 18476 2 IHTLELK Unmodified 852.5069 0.50690308 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 7 0 1 44.846 44.846 3 0.0025927 11460 TMT1-6 102.77 20.468 122.36 241.4 150.43 170.45 165.53 282.03 116 237 160 167 175 269 1 1 1 1 1 1 27517 8999 2162 8915 14169 18478 18478 1 IHVFYIDYGNR Unmodified 1395.6935 0.69353465 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 55.766 55.766 3 0.00053352 15930 TMT1-7 91.549 80.337 154.85 188.24 144.43 178.57 159.46 204.39 146 189 152 174 167 196 2 2 2 2 2 2 47978 9000 2071 8916 14170 18479;18480 18480 2 IHVIDHSGAR Unmodified 1103.5836 0.58359027 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 6 0 1 27.29 27.29 3 0.0071093 5273 TMT1-5 67.334 53.339 54.348 42.702 26.896 36.941 42.758 45.684 51 44 29 36 44 44 1 1 1 1 1 1 3691.2 9001 2461 8917 14171 18481 18481 1 IHVLEAQDLIAK Unmodified 1348.7715 0.77145062 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 58.814 58.814 3 2.5017E-06 17575 TMT1-5 115.33 82.135 340.27 431.11 334.56 395.98 318 414.13 321 432 351 386 335 397 2 2 2 2 2 2 56886 9002 2525 8918 14172;14173 18482;18483 18482 2 IHVSDQELQSANASVDDSR Unmodified 2069.9614 0.96138925 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 2 0 1 44.669 44.669 3 0.010397 12832 TMT1-1 43.115 35.916 99.758 100.12 100.63 72.369 75.634 137.49 94 102 102 73 80 131 1 1 1 1 1 1 4996.5 9003 845 8919 14174 18484 18484 1 IHVSDQELQSANASVDDSRLEELK Unmodified 2682.3097 0.30966642 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 5 0 1 55.165 55.165 4 0.00043238 16021 TMT1-4 52.782 34.784 130.5 143.35 127.66 108.29 172.15 142.2 123 145 131 109 174 138 1 1 1 1 1 1 13821 9004 845 8920 14175 18485 18485 1 IHVYGYSMAYGPAQHAISTEK Unmodified 2322.1103 0.11030209 2735 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase yes yes 0 0 0 0 0 8 0 1 51.427 51.427 4 0.0069366 14154 TMT1-7 40.81 32.658 61.334 87.138 77.403 81.264 83.104 121.28 58 87 80 80 87 116 1 1 1 1 1 1 4807.7 9005 2735 8921 14176 18486 18486 1 IHYLDTTTLIEPAPR Unmodified 1738.9254 0.92538508 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 6 0 1 57.011 57.011 3 1.0066E-07 16878 TMT1-5 108.34 85.111 306.64 460.42 371.99 224.55 364.56 536.46 290 458 380 232 376 513 2 2 2 2 2 2 78265 9006 1127 8922 14177 18487;18488 18487 2 IIADIFEYTAK Unmodified 1282.6809 0.68090428 838 P22033 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 0 0 0 0 0 7 0 1 82.749 82.749 3 0.0010731 26331 TMT1-6 85.958 58.549 23.37 21.474 21.401 22.367 21.456 15.378 22 22 22 22 22 15 1 1 1 1 1 1 4114.3 9007 838 8923 14178 18489 18489 1 IIADLEEEQR Unmodified 1214.6143 0.61428128 1138 P46939;P46939-2;P46939-4;P46939-3 UTRN Utrophin yes no 0 0 0 0 0 2 0 1 57.54 57.54 2 0.00053113 17897 TMT1-1 114.5 79.272 68.578 125.82 89.525 96.275 60.149 99.554 65 124 94 94 65 95 2 2 2 2 2 2 6474.1 9008 1138 8924 14179 18490;18491 18491 2 IIAFVGSPVEDNEKDLVK Unmodified 1972.0517 0.051707805 1308 P55036-2;P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 1 7 0 1 67.255 67.255 4 0.0033604 20355 TMT1-6 53.008 37.918 68.913 63.069 86.401 80.845 76.857 90.549 65 65 87 80 80 87 1 1 1 1 1 1 5970.4 9009 1308 8925 14180 18492 18492 1 IIAGDKEVVIAQNDK Unmodified 1611.8832 0.88318591 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 1 6 0 1 52.502 52.502 3 2.048E-05 15145 TMT1-5 92.575 59.275 138.83 185.24 133.74 84.442 142.37 157.97 131 185 138 87 145 152 1 1 1 1 1 1 12156 9010 336 8926 14181 18493 18493 1 IIAHAQLLEQHR Unmodified 1427.7997 0.79973106 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 7 0 1 39.987 39.987 4 0.00036246 9545 TMT1-6 85.813 59.77 46.546 65.073 56.702 42.978 34.104 45.931 44 65 58 43 36 44 1 1 1 1 1 1 9261.6 9011 917 8927 14182 18494 18494 1 IIAHFLIQQYLK Unmodified 1485.8708 0.87077073 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 0 9 0 1 72.87 72.87 3 0.00012147 20783 TMT1-8 93.096 64.463 46.614 81.451 31.483 52.677 63.253 67.485 44 80 36 51 65 65 1 1 1 1 1 1 5947.5 9012 1125 8928 14183 18495 18495 1 IIALDGDTK Unmodified 944.51786 0.51786169 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 5.5 0.5 1 1 55.594 55.594 2 0.0017037 16329 TMT1-4 114.99 60.448 1313.2 2137.5 1647.5 1425.1 1818 2082.3 1243 2118 1706 1425 1869 2002 4 4 4 4 4 4 229660 9013 937 8929 14184;14185 18496;18497;18498;18499 18497 4 IIALPHDNR Unmodified 1047.5825 0.58252764 2966 Q9Y2I8-2;Q9Y2I8 WDR37 WD repeat-containing protein 37 yes no 0 0 0 0 0 7 0 1 42.72 42.72 3 0.005831 10654 TMT1-6 73.985 29.374 22.995 43.096 66.112 34.029 73.292 43.747 22 43 65 36 73 43 1 1 1 1 1 1 5708.8 9014 2966 8930 14186 18500 18500 1 IIANALSSEPACLAEIEEDKAR Unmodified 2399.2002 0.20023931 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 5 0 1 69.051 69.051 4 0.00012106 21465 TMT1-4 61.703 45.761 37.897 57.923 73.811 33.876 57.044 60.2 36 58 73 36 58 58 1 1 1 1 1 1 9277 9015 1507 8931 14187 18501 18501 1 IIAPPER Unmodified 794.46504 0.46503826 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 0 6 2.58 1 1 1 1 1 1 41.412 41.412 2 0.00074921 10660 TMT1-5 151.14 34.27 34318 48591 44277 35591 48656 45144 32457 48539 45241 35814 49561 43651 12 12 12 12 12 12 5590700 9016 1357;1479;1488;1952 8932 14188;14189;14190;14191;14192;14193 18502;18503;18504;18505;18506;18507;18508;18509;18510;18511;18512;18513 18508 12 IIAPPERK Unmodified 922.56 0.56000128 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 1 6.25 3.11 1 1 1 1 38.87 38.87 3 0.0036483 9077 TMT1-7 97.635 72.498 60233 80591 69794 55386 60726 79754 56901 80657 71534 55524 63106 76442 12 12 12 12 12 12 3448400 9017 1357;1479;1488;1952 8933 14194;14195;14196;14197 18514;18515;18516;18517;18518;18519;18520;18521;18522;18523;18524;18525 18523 12 IIAQCLNK Unmodified 958.52699 0.52698659 261 O75306-2;O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 0 0 8 0 1 50.375 50.375 2 0.006274 13765 TMT1-7 107.43 55.575 92.304 100.79 90.565 103.94 114 74.565 87 102 94 102 116 73 1 1 1 1 1 1 7741.2 9018 261 8934 14198 18526 18526 1 IIAWTSK Unmodified 817.46979 0.46978929 2877 Q9UIB8-3;Q9UIB8-2;Q9UIB8;Q9UIB8-6;Q9UIB8-5;Q9UIB8-4 CD84 SLAM family member 5 yes no 0 0 0 0 0 9 0 1 58.122 58.122 2 0.011303 14998 TMT1-8 117.17 31.904 234.6 339.56 318.3 191.94 292.78 294.39 222 339 322 198 298 284 1 1 1 1 1 1 34432 9019 2877 8935 14199 18527 18527 1 IICDNTGITTVSK Unmodified 1420.7232 0.7231798 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 6.33 0.471 2 1 54.896 54.896 2;3 3.4393E-10 16135 TMT1-5 132.79 86.184 490.13 731.21 681.82 486.33 689.62 619.92 464 729 693 494 701 600 4 4 4 4 4 4 125370 9020 489 8936 14200;14201;14202 18528;18529;18530;18531 18529 4 IICILSHPIK Unmodified 1192.7002 0.70019993 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 9 0 1 60.748 60.748 3 0.00038583 16054 TMT1-8 98.943 59.677 493.45 615.62 581.51 513.08 573.51 675.47 466 619 595 511 593 649 2 2 2 2 2 2 69380 9021 972 8937 14203 18532;18533 18533 2 IICQGFTGK Unmodified 1022.5219 0.52190122 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 9 0 1 52.11 52.11 2 0.0012381 12624 TMT1-8 126.07 41.5 146.62 197.38 76.586 111.5 163.61 173.35 138 196 87 109 167 167 1 1 1 1 1 1 16148 9022 1285 8938 14204 18534 18534 1 IIDAALR Unmodified 770.46504 0.46503826 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 0 6 0 1 50.163 50.163 2 0.0057733 14161 TMT1-5 133.47 46.534 509.47 738.43 490.21 403.62 522.7 656.66 481 734 513 405 539 630 2 2 2 2 2 2 147770 9023 815 8939 14205 18535;18536 18535 2 IIDDSEITKEDDALWPPPDR Unmodified 2324.1172 0.11722119 2360 Q96A72 MAGOHB Protein mago nashi homolog 2 no no 0 0 0 0 1 3.5 0.5 1 1 67.864 67.864 3 5.0028E-13 21227 TMT1-3 104.45 91.648 99.629 138.61 89.727 95.262 113.36 135.35 94 138 95 94 117 130 3 3 3 3 3 3 21879 9024 2360 8940 14206;14207 18537;18538;18539 18538 3 IIDEDFELTER Unmodified 1378.6616 0.6616254 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 2.5 0.5 1 1 64.045 64.045 2 1.7528E-09 20376 TMT1-1 166.66 125.23 84.625 115.95 105.98 102.75 128.7 105.06 80 116 109 102 131 102 2 2 2 2 2 2 20697 9025 1870 8941 14208;14209 18540;18541;18542 18540 3 IIDETMAQLQDLK Unmodified 1516.7807 0.78069468 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 6.5 0.5 1 1 86.673 86.673 3 0.0020328 24979 TMT1-5 69.716 36.512 66.943 65.863 54.471 41.112 82.301 76.536 63 67 56 42 83 74 2 2 2 2 2 2 12535 9026 1790 8942 14210;14211 18543;18544 18543 2 IIDFLSALEGFK Unmodified 1351.7388 0.73875351 1273 P52701-4;P52701-2;P52701-3;P52701 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 0 9 0 1 99.196 99.196 3 0.0035232 30731 TMT1-8 60.49 22.197 23.298 36.384 20.853 14.609 28.886 22.628 22 36 22 15 29 22 1 1 1 1 1 1 1202.8 9027 1273 8943 14212 18545 18545 1 IIDTPQFQR Unmodified 1116.5928 0.59275797 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 6 0 1 51.871 51.871 2 8.8032E-09 14877 TMT1-5 171.75 124.4 294.85 527.11 312.48 330.31 218.46 537.43 279 519 333 323 241 510 1 1 1 1 1 1 75925 9028 3006 8944 14213 18546 18546 1 IIDVVYNASNNELVR Unmodified 1717.8999 0.89989861 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 6 0 1 69.266 69.266 3 2.0512E-05 21679 TMT1-5 90.707 56.443 23.248 28.69 35.82 29.041 27.709 37.585 22 29 36 29 29 36 1 1 1 1 1 1 33043 9029 1417 8945 14214 18547 18547 1 IIEDPAR Unmodified 812.43922 0.43921744 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 3 0 1 40.377 40.377 2 0.026794 11438 TMT1-2 92.319 12.025 91.872 122.25 145 91.862 118.99 158.64 87 123 145 94 123 152 1 1 1 1 1 1 15183 9030 374 8946 14215 18548 18548 1 IIEDQQESLNK Unmodified 1315.662 0.66195975 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 3 1 1 1 49.017 49.017 3 1.6917E-06 13848 TMT1-3 126.19 101.9 68.773 102.61 76.447 81.03 98.563 128.31 65 102 80 80 102 123 1 1 1 1 1 1 24895 9031 498 8947 14216;14217 18549;18550 18550 2 IIEETLALK Unmodified 1028.6118 0.61176208 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 67.749 67.749 2;3 4.3969E-20 21062 TMT1-5 198.54 130.12 955.4 2042.6 1443.5 1219.7 1532.3 1599 908 2003 1502 1221 1571 1541 3 3 3 3 3 3 203320 9032 129 8948 14218;14219 18551;18552;18553 18552 3 IIEIANK Unmodified 799.48035 0.48035398 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 6.5 0.5 1 1 53.472 53.472 2 0.0016506 14875 TMT1-6 146.21 23.416 861.22 1698.5 1152.9 1003 1192.5 1428.5 817 1669 1205 1001 1231 1372 3 3 3 3 3 3 145140 9033 1079 8949 14220;14221 18554;18555;18556 18555 3 IIENAENEYQTAISENYQTMSDTTFK Unmodified 3039.3655 0.36552632 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 5 0 1 77.345 77.345 4 1.9041E-16 24722 TMT1-4 100.08 94.708 84.798 108.87 82.855 96.949 103.55 175.07 80 109 87 95 109 167 2 2 2 2 2 2 17363 9034 1277 8950 14222 18557;18558 18557 2 IIESIIEESQK Unmodified 1287.6922 0.69219725 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 5 0 1 73.575 73.575 3 0.00010134 23199 TMT1-4 103.08 59.775 61.906 64.986 0 47.213 46.72 129.78 58 65 0 44 51 123 1 1 0 1 1 1 15436 9035 1960 8951 14223 18559 18559 1 IIEVGDTPK Unmodified 970.53351 0.53351176 1396 P61619;Q9H9S3-2;Q9H9S3-3;Q9H9S3 SEC61A1;SEC61A2 Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2 yes no 0 0 0 0 0 5 0 1 52.01 52.01 2 5.8602E-08 14798 TMT1-4 140.5 85.952 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9036 1396 8952 14224 18560 18560 1 IIEVSGQK Unmodified 872.49673 0.49673232 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 6 0 1 47.075 47.075 2 0.0062567 12978 TMT1-5 107.66 30.766 474.83 726.97 551.5 528.89 466.91 712.62 449 722 574 522 493 681 1 1 1 1 1 1 71337 9037 1378 8953 14225 18561 18561 1 IIEVVDAIMTTAQSHQR Unmodified 1910.9884 0.98839604 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 8.5 0.5 1 1 82.558 82.558 3 4.7174E-54 24446 TMT1-8 199.37 176.65 93.277 139.29 74.803 65.769 101.59 90.909 88 138 80 66 103 88 3 3 3 3 3 3 23241 9038 1559 8954 14226;14227 18562;18563;18564 18563 3 IIFDDFR Unmodified 924.47052 0.47051757 1141 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 0 6 0 1 65.655 65.655 2 0.0080379 20272 TMT1-5 120.65 80.542 76.937 132.16 122.01 61.898 99.7 120.81 73 131 123 65 102 116 1 1 1 1 1 1 35427 9039 1141 8955 14228 18565 18565 1 IIFEDDR Unmodified 906.4447 0.44469675 1203 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 0 3 0.816 1 1 1 52.48 52.48 2 4.765E-05 15170 TMT1-3 160.91 86.579 592.84 1216 862.01 731.62 966.46 1093.9 563 1194 897 733 992 1052 5 5 5 5 5 5 155350 9040 1203 8956 14229;14230;14231 18566;18567;18568;18569;18570 18570 5 IIFVVGGPGSGK Unmodified 1129.6495 0.64954457 398 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 0 9 0 1 65.169 65.169 3 0.00033444 17720 TMT1-8 84.479 61.051 84.72 123.76 83.414 64.353 91.467 113.58 80 123 87 65 94 109 1 1 1 1 1 1 20615 9041 398 8957 14232 18571 18571 1 IIGATDSSGELMFLMK Unmodified 1711.8525 0.85247941 1681;1518 Q13185;P83916 CBX3;CBX1 Chromobox protein homolog 3;Chromobox protein homolog 1 no no 0 0 0 0 0 7.5 0.5 1 1 81.914 81.914 3 2.4792E-05 26051 TMT1-6 83.729 52.768 115.51 175.78 93.559 103.12 148.32 172.72 109 174 101 102 152 166 3 3 3 3 3 3 20210 9042 1681;1518 8958 14233;14234 18572;18573;18574 18572 3 IIGDTFVK Unmodified 891.50657 0.50656873 1209 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 0 7 0 1 59.037 59.037 2 0.014888 17187 TMT1-6 93.374 13.564 129.72 252.35 166.01 145.12 184.58 187.68 123 248 174 145 189 181 1 1 1 1 1 1 45160 9043 1209 8959 14235 18575 18575 1 IIGFGSALLEEVDPNPANFVGAGIIHTK Unmodified 2878.5229 0.52289408 335 O94973-2;O94973 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 0 8 0 1 88.902 88.902 4 0.011356 28806 TMT1-7 35.678 29.245 15.801 21.827 30.856 4.827 52.37 21.958 15 22 30 7 51 22 1 1 1 1 1 1 5070.4 9044 335 8960 14236 18576 18576 1 IIGGDPK Unmodified 698.39629 0.39629 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 6 0 1 43.533 43.533 2 0.0088724 11576 TMT1-5 114.72 62.084 3832.4 5011.2 4287.9 3214.6 4362.8 4718.3 3619 5020 4391 3250 4467 4543 1 1 1 1 1 1 348130 9045 250 8961 14237 18577 18577 1 IIGLDQVAGMSETALPGAFK Unmodified 2017.0554 0.055412974 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 6.67 2.62 1 2 2 1 81.646 81.646 3;4 2.3588E-31 26215 TMT1-7 152.18 122.84 1509.6 1774.2 1579.7 1374.4 1591.1 2359.5 1424 1788 1622 1371 1659 2256 11 11 11 11 11 11 670270 9046 1019 8962 14238;14239;14240;14241;14242;14243 18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588 18584 11 IIGLDQVAGMSETALPGAFK Oxidation (M) 2033.0503 0.050327596 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 7.67 0.471 1 2 75.217 75.217 3;4 2.1156E-17 23582 TMT1-7 123.55 98.768 300.59 292.31 268.81 241.76 241.56 379 283 298 276 240 254 362 3 3 3 3 3 3 102490 9047 1019 8962 14244;14245;14246 18589;18590;18591;18592 18591 182 4 IIGNLLYYR Unmodified 1123.639 0.63897988 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 67.922 67.922 2 0.0001577 18816 TMT1-8 147.16 84.276 99.156 202.05 115.57 109.75 133.07 181.69 94 198 123 109 138 174 1 1 1 1 1 1 54967 9048 1139 8963 14247 18593 18593 1 IIGVDINK Unmodified 870.51747 0.51746776 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 7 0 1 57.854 57.854 2 0.00492 16614 TMT1-6 121.62 32.496 236.38 455.14 461.93 333.68 437.4 432.04 225 450 467 338 447 417 1 1 1 1 1 1 50373 9049 660 8964 14248 18594 18594 1 IIGVDINKDK Unmodified 1113.6394 0.63937381 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 1 7.5 0.5 1 1 52.524 52.524 3 0.0039584 14638 TMT1-7 82.261 10.912 861.67 1012.6 937.31 669.49 718.42 1120.1 813 1021 954 676 753 1070 2 2 2 2 2 2 93858 9050 660 8965 14249;14250 18595;18596 18596 2 IIHEDGYSEEECR Unmodified 1635.6835 0.68349983 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 2.5 0.5 1 1 37.24 37.24 3 1.3497E-47 9850 TMT1-1 219.74 213.71 92.436 101.16 68.137 96.831 98.35 113.39 87 102 73 94 102 109 1 1 1 1 1 1 52119 9051 480 8966 14251;14252 18597;18598 18597 2 IIHGQDFDQR Unmodified 1227.5996 0.59963426 1773 Q14344 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 0 0 0 0 0 4 0 1 37.261 37.261 3 6.2369E-15 9220 TMT1-3 185.96 147.67 115.48 144.39 125.52 156.6 109.2 143.99 109 145 131 152 116 138 1 1 1 1 1 1 28235 9052 1773 8967 14253 18599 18599 1 IIHSGGFNLEACK Unmodified 1444.7133 0.71328381 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 7 0 1 50.908 50.908 3 2.8562E-08 13889 TMT1-6 118.76 90.049 84.375 139 128.45 101.58 119.61 127.7 80 138 131 102 123 123 1 1 1 1 1 1 12883 9053 785 8968 14254 18600 18600 1 IIIDKEYYYTK Unmodified 1447.7599 0.75988288 2081 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 1 8 0 1 58.514 58.514 3 4.2888E-05 16962 TMT1-7 112.13 86.114 161.28 156.47 173.07 160.77 201.93 148.81 152 160 176 160 205 145 1 1 1 1 1 1 12755 9054 2081 8969 14255 18601 18601 1 IIIPEIQK Unmodified 952.59572 0.59571809 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 8 0 1 64.072 64.072 2 0.029069 19117 TMT1-7 82.452 23.535 123.08 120.38 131.19 60.769 130.63 105 116 123 131 65 131 102 1 1 1 1 1 1 19797 9055 1310 8970 14256 18602 18602 1 IIITVVEEQEQK Unmodified 1427.7872 0.78716026 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 68.231 68.231 3 6.9474E-09 21119 TMT1-4 134.98 108.93 77.017 155.04 89.173 63.847 100.12 105.87 73 152 94 65 102 102 1 1 1 1 1 1 13029 9056 1833 8971 14257 18603 18603 1 IIKPCNHVLSLSFPIR Unmodified 1893.0659 0.065858501 387 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 1 9 0 1 59.742 59.742 4 0.023186 15591 TMT1-8 46.156 28.356 76.751 154.3 134.47 116.84 102.63 175.09 73 152 138 116 109 167 1 1 1 1 1 1 14761 9057 387 8972 14258 18604 18604 1 IILDLISESPIK Unmodified 1339.7963 0.79626839 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 8 0.707 1 2 1 89.075 89.075 2;3 5.5139E-14 28793 TMT1-7 169.52 131.43 687.41 1105.3 931.35 843.9 994.82 1336.1 651 1097 960 840 1032 1280 7 7 7 7 7 7 202480 9058 1409;1410 8973 14259;14260;14261;14262 18605;18606;18607;18608;18609;18610;18611 18609 7 IILEAEK Unmodified 814.48002 0.48001963 1847 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 0 0 5 0 1 53.475 53.475 2 0.011901 15331 TMT1-4 103.92 25.422 115.5 168.19 102.02 117.76 156.8 150.1 109 167 109 116 160 145 1 1 1 1 1 1 25746 9059 1847 8974 14263 18612 18612 1 IILGGFSQGGALSLYTALTTQQK Unmodified 2366.2846 0.28456129 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 9 0 2 87.742 87.742 3 2.2137E-45 26515 TMT1-8 136.14 106.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9060 291 8975 14264;14265 18613;18614 18613 2 IILLAEGR Unmodified 883.5491 0.54910224 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 0 8 0 1 59.974 59.974 2 0.0061809 17595 TMT1-7 108.7 50.503 153.29 240.93 181.46 175.39 211.69 241.27 145 239 189 174 218 232 2 2 2 2 2 2 26335 9061 864 8976 14266 18615;18616 18616 2 IILLFDAHK Unmodified 1068.6332 0.63316622 2654;2802;2622 Q9H4M9;Q9NZN3;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 0 0 0 9 0 1 66.426 66.426 3 0.00027786 18181 TMT1-8 111.65 40.675 345.35 645.26 742.55 615.4 840.74 676.37 329 640 749 618 853 657 2 2 2 2 2 2 136960 9062 2654;2802;2622 8977 14267 18617;18618 18617 2 IILLFDAHKLDISDEFSEVIK Unmodified 2444.3203 0.32027809 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 1 8 0 1 84.843 84.843 4 6.8128E-11 27175 TMT1-7 102.39 85.365 116.08 83.453 77.012 88.802 90.343 113.62 109 87 80 87 94 109 1 1 1 1 1 1 16261 9063 2654;2802 8978 14268 18619 18619 1 IILPEGAK Unmodified 839.51165 0.5116541 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 7 0 1 54.039 54.039 2 0.032741 15084 TMT1-6 79.809 22.25 129.99 134.37 221.16 158.84 151.72 242.98 123 138 219 160 160 232 1 1 1 1 1 1 72507 9064 478 8979 14269 18620 18620 1 IIMPPSALDQLSR Unmodified 1439.7806 0.7806351 2326 Q92890-3;Q92890;Q92890-1 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 0 8 0 1 68.548 68.548 2 0.012869 20890 TMT1-7 66.953 37.403 85.053 93.394 53.04 82.697 84.101 90.342 80 94 58 80 87 87 1 1 1 1 1 1 13513 9065 2326 8980 14270 18621 18621 1 IIMTSSASGIYGNFGQANYSAAK Unmodified 2350.1263 0.12634609 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 9 0 1 67.511 67.511 4 7.762E-07 18690 TMT1-8 63.869 47.184 53.826 95.214 70.119 64.708 114.74 105.46 51 94 73 65 116 102 1 1 1 1 1 1 12700 9066 1250 8981 14271 18622 18622 1 IINADSEDPK Unmodified 1100.535 0.53496832 1033 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 0 4 0 1 45.343 45.343 2 0.003032 12461 TMT1-3 97.456 74.137 92.749 70.727 41.314 35.529 72.124 75.76 87 73 44 36 73 73 1 1 1 1 1 1 10498 9067 1033 8982 14272 18623 18623 1 IINDLLQSLR Unmodified 1183.6925 0.69247202 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 9 0 1 83.228 83.228 2 0.0056523 24892 TMT1-8 90.142 56.747 146.72 126.4 120.98 109.11 149.86 150.29 138 130 124 109 153 145 2 2 2 2 2 2 22766 9068 2334 8983 14273 18624;18625 18625 2 IINDNATYCR Unmodified 1238.5714 0.5713706 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 4 0 1 41.857 41.857 2 0.00083411 11056 TMT1-3 105.4 50.857 77.423 78.465 85.78 73.097 83.992 106.34 73 80 87 73 87 102 1 1 1 1 1 1 13934 9069 81 8984 14274 18626 18626 1 IINEPTAAAIAYGLDK Unmodified 1658.8879 0.88793694 641;640 P11021;P11142;P11142-2;P54652 HSPA5;HSPA8;HSPA2 78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 0 0 0 0 0 6 0 2 71.731 71.731 2;3 1.3439E-17 22660 TMT1-5 147.35 116.12 386.52 459.75 471.57 458.35 403.04 625.97 365 464 482 452 426 598 2 2 2 2 2 2 232650 9070 640;641 8985 14275;14276 18627;18628 18627 2 IINEPTAAAIAYGLDKK Unmodified 1786.9829 0.98289996 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 1 7.67 0.471 1 2 66.297 66.297 3;4 3.9179E-26 19950 TMT1-6 154.74 138.37 2952.1 3289.5 2942.9 3594.3 2851.1 5769.9 2783 3325 3064 3498 3073 5489 7 7 7 7 7 7 437430 9071 641 8986 14277;14278;14279 18629;18630;18631;18632;18633;18634;18635 18629 7 IINEPTAAAIAYGLDKR Unmodified 1814.989 0.98904797 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5.33 3.09 1 1 1 64.539 64.539 3;4 0.00011961 19182 TMT1-7 75.97 61.551 250.08 378.66 208.24 276.31 281.34 332.03 236 375 226 269 292 319 4 4 4 4 4 4 34474 9072 640 8987 14280;14281;14282 18636;18637;18638;18639 18639 4 IINEPTAAAIAYGLDR Unmodified 1686.8941 0.89408495 618;754 P17066;P0DMV8;P0DMV9;P0DMV8-2 HSPA6;HSPA1A;HSPA1B Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 5.33 0.471 2 1 68.949 68.949 2;3 1.0339E-22 21543 TMT1-5 167.61 121.01 131.21 182.21 154.7 153.34 190.18 226.96 124 182 160 152 196 218 4 4 4 4 4 4 110460 9073 754;618 8988 14283;14284;14285 18640;18641;18642;18643 18642 4 IINEVSKPLAHHIPVEK Unmodified 1923.0942 0.094181742 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 7.67 0.471 1 2 49.42 49.42 4;5 8.6416E-06 13280 TMT1-7 85.808 77.016 821.37 1256.6 1011.2 944.89 1183.6 1094.1 777 1249 1047 940 1209 1058 4 4 4 4 4 4 121300 9074 1313 8989 14286;14287;14288 18644;18645;18646;18647 18645 4 IINILTDK Unmodified 928.55933 0.55933258 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 68.035 68.035 2 0.017709 20672 TMT1-7 90.629 18.082 291.5 400.5 261.8 278.8 328.1 307.24 275 399 277 275 336 297 2 2 2 2 2 2 49621 9075 1229 8990 14289 18648;18649 18648 2 IINTPEVVR Unmodified 1039.6026 0.60259438 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 49.929 49.929 2 0.013844 13982 TMT1-4 83.647 43.602 84.696 108.59 100.24 71.535 121.24 120.2 80 109 102 73 123 116 1 1 1 1 1 1 13945 9076 2654 8991 14290 18650 18650 1 IIPAIWFR Unmodified 1014.6015 0.60147217 2355 Q969X5;Q969X5-2 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 0 9 0 1 77.07 77.07 2 0.0071784 22420 TMT1-8 116 71.603 53.741 94.979 84.564 80.832 83.38 113.81 51 94 87 80 87 109 1 1 1 1 1 1 13513 9077 2355 8992 14291 18651 18651 1 IIPAVASTNAVIAAVCATEVFK Unmodified 2244.2188 0.21878991 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 9 0 1 92.466 92.466 3 2.4206E-06 28407 TMT1-8 61.222 43.941 7.3028 15.096 22.202 14.809 13.962 30.516 7 15 22 15 15 29 1 1 1 1 1 1 3256.7 9078 2241 8993 14292 18652 18652 1 IIPGFMCQGGDFTR Unmodified 1597.7381 0.73811836 1461 P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 0 0 0 0 0 6.25 3.11 1 1 1 1 69.51 69.51 2;3 3.4694E-27 21302 TMT1-7 188.6 154.86 536.38 732.51 481.19 514 551.79 789.08 506 730 509 506 576 755 7 7 7 7 7 7 334100 9079 1461 8994 14293;14294;14295;14296 18653;18654;18655;18656;18657;18658;18659 18657 7 IIPGFMCQGGDFTR Oxidation (M) 1613.733 0.73303298 1461 P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 0 0 1 0 0 8.33 0.943 1 2 65.215 65.215 3 0.00028847 18641 TMT1-6 63.185 52.28 107.83 144.51 149.36 132.2 110.61 135.42 102 145 152 131 116 130 2 2 2 2 2 2 14385 9080 1461 8994 14297;14298;14299 18660;18661;18662 18660 235 3 IIPHLPAPK Unmodified 984.61204 0.61203685 17 P14598;A6NI72;P14598-2;A8MVU1 NCF1;NCF1B;NCF1C Neutrophil cytosol factor 1;Putative neutrophil cytosol factor 1B;Putative neutrophil cytosol factor 1C yes no 0 0 0 0 0 9 0 1 50.83 50.83 3 0.0029705 12109 TMT1-8 75.38 51.823 191.04 289.8 288.19 162.49 152.44 338.9 181 289 290 167 164 322 1 1 1 1 1 1 17563 9081 17 8995 14300 18663 18663 1 IIPLVVK Unmodified 780.54731 0.54731133 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 1 65.842 65.842 2 0.011054 18033 TMT1-8 91.093 38.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9082 2116 8996 14301 18664 18664 1 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK Unmodified 4054.0245 0.024513361 1409 P61978-2;P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 0 6.5 0.5 1 1 84.024 84.024 5 5.064E-08 27474 TMT1-5 62.302 53.538 85.877 116.37 75.526 81.233 90.691 113.61 81 116 80 80 94 109 3 3 3 3 3 3 27496 9083 1409 8997 14302;14303 18665;18666;18667 18665 3 IIPTLEEYQHYK Unmodified 1532.7875 0.78749461 1410 P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 0 0 0 0 0 6 0 1 61.007 61.007 3 0.0014219 18457 TMT1-5 76.326 48.273 107.54 206.3 146.08 122.65 163.64 157.36 102 203 152 123 167 152 1 1 1 1 1 1 14974 9084 1410 8998 14304 18668 18668 1 IIPVVVK Unmodified 766.53166 0.53166127 2432 Q96KG9-5;Q96KG9-3;Q96KG9-4;Q96KG9-6;Q96KG9-2;Q96KG9 SCYL1 N-terminal kinase-like protein yes no 0 0 0 0 0 9 0 1 61.135 61.135 2 0.015048 16190 TMT1-8 99.511 99.511 68.738 78.772 102.48 63.053 100.16 105.87 65 80 102 65 102 102 1 1 1 1 1 1 5244.3 9085 2432 8999 14305 18669 18669 1 IIPYLSFGEVEK Unmodified 1393.7493 0.74931819 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 7.5 0.5 1 1 77.183 77.183 3 0.0033175 24201 TMT1-6 51.841 16.33 54.254 42.442 42.788 44.897 34.309 37.397 51 44 44 44 36 36 1 1 1 1 1 1 8991.6 9086 1977 9000 14306;14307 18670;18671 18670 2 IIQEFLSK Unmodified 976.55933 0.55933258 1110 P43246-2;P43246 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 0 8 0 1 71.712 71.712 2 0.036916 22181 TMT1-7 78.264 19.449 61.277 110.72 66.979 113.47 89.209 113.65 58 109 73 109 94 109 1 1 1 1 1 1 5683.4 9087 1110 9001 14308 18672 18672 1 IIQHCSNYSTQELLR Unmodified 1860.9152 0.9152311 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 8 0 1 46.148 46.148 3 5.0067E-08 12103 TMT1-7 112.68 106.08 54.095 57.11 57.113 43.644 55.533 91.157 51 58 58 44 58 87 1 1 1 1 1 1 16150 9088 68 9002 14309 18673 18673 1 IIQLIEGK Unmodified 912.56442 0.56441796 375 O95861-3;O95861-4;O95861;O95861-2 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 0 8 0 1 69.086 69.086 2 0.0061775 21089 TMT1-7 108.74 57.865 115.4 129.04 153.08 68.648 107.23 105.67 109 131 152 73 109 102 1 1 1 1 1 1 16001 9089 375 9003 14310 18674 18674 1 IIQLLDDYPK Unmodified 1216.6703 0.67033959 496 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 6.5 0.5 1 1 73.727 73.727 2 6.4485E-05 22861 TMT1-6 143.89 76.858 299.52 374.61 377.99 303.4 395.25 359.69 283 377 384 305 403 348 3 3 3 3 3 3 49539 9090 496 9004 14311;14312 18675;18676;18677 18677 3 IIQTPGLWESENQNK Unmodified 1755.8792 0.87916317 2700 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 6 0 1 62.72 62.72 3 1.143E-14 19164 TMT1-5 113.59 89.744 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9091 2700 9005 14313 18678 18678 1 IIRPFFLK Unmodified 1032.6484 0.64842236 1543 Q00765 REEP5 Receptor expression-enhancing protein 5 yes yes 0 0 0 0 1 9 0 1 62.873 62.873 3 0.01524 16807 TMT1-8 58.917 18.649 153.53 216.77 161.84 113.95 169.98 197.69 145 216 167 116 174 190 1 1 1 1 1 1 35904 9092 1543 9006 14314 18679 18679 1 IISAASEGGANVFTVSYFK Unmodified 1959.9942 0.99419293 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 2 75.418 75.418 3;4 5.6708E-16 21770 TMT1-8 118.48 94.289 116.49 166.81 117.23 142.3 140.22 143.11 110 166 124 139 145 138 3 3 3 3 3 3 21760 9093 714 9007 14315;14316 18680;18681;18682 18680 3 IISDNLTYCK Unmodified 1225.6013 0.60127375 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 7 0 1 56.492 56.492 3 0.00013648 16089 TMT1-6 81.865 59.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9094 2977 9008 14317 18683 18683 1 IISGIHMQTSESTK Unmodified 1530.7712 0.77119262 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 7 0 1 46.872 46.872 3 1.5707E-14 12281 TMT1-6 130.24 120.14 130.15 189.86 147.3 114.96 162.35 205.37 123 189 152 116 167 197 1 1 1 1 1 1 25401 9095 740 9009 14318 18684 18684 1 IISIFSGTEK Unmodified 1093.6019 0.60192568 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 8.5 0.5 1 1 67.701 67.701 2 3.6428E-12 18723 TMT1-8 175.73 94.184 153.92 164.97 139.98 139.99 133 143.31 145 167 145 138 138 138 2 2 2 2 2 2 20525 9096 1680 9010 14319;14320 18685;18686 18686 2 IISLDLPVAEVYKK Unmodified 1586.9283 0.92834519 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 1 8 0 1 71.241 71.241 3 0.0020348 21975 TMT1-7 52.009 23.376 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9097 1977 9011 14321 18687 18687 1 IISLETYNLLR Unmodified 1333.7606 0.76055158 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 73.461 73.461 3 8.7321E-10 22845 TMT1-7 130.41 104 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9098 1833 9012 14322 18688 18688 1 IISNASCTTNCLAPLAK Unmodified 1832.9125 0.91245391 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 6.5 3.2 1 2 1 60.455 60.455 3;4 9.1038E-15 15838 TMT1-8 120.66 84.271 2523.2 3382.6 2986.7 2316.1 2971.3 3521.5 2384 3386 3055 2333 3058 3383 8 8 8 8 8 8 876170 9099 472 9013 14323;14324;14325;14326 18689;18690;18691;18692;18693;18694;18695;18696 18695 8 IISNLFLGR Unmodified 1031.6128 0.61276513 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 9 0 1 70.678 70.678 2 0.011453 19895 TMT1-8 90.761 50.658 84.931 116.8 53.783 34.509 86.829 75.34 80 116 58 36 87 73 1 1 1 1 1 1 12248 9100 2306 9014 14327 18697 18697 1 IISSDRDLLAVVFYGTEK Unmodified 2025.0783 0.078256906 675 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 0 1 8 0 1 79.903 79.903 3 9.0143E-09 25271 TMT1-7 103.87 78.546 169.58 256.57 134.81 131.01 161.9 196.85 160 254 145 130 167 189 2 2 2 2 2 2 32503 9101 675 9015 14328 18698;18699 18698 2 IISSIEQK Unmodified 916.52295 0.52294707 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 6.5 0.5 1 1 52.564 52.564 2 7.4034E-05 14565 TMT1-6 157.34 65.716 1040.9 1290.3 1234.1 1069.4 1356.5 1376.9 983 1298 1261 1069 1389 1328 4 4 4 4 4 4 144320 9102 1422 9016 14329;14330 18700;18701;18702;18703 18703 4 IISSIEQKEENK Unmodified 1416.746 0.74602373 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 1 6 0 1 52.624 52.624 3 0.00089856 15166 TMT1-5 84.892 45.744 281.24 408.12 356.58 157.93 410.29 329.41 266 407 360 171 410 320 1 1 1 1 1 1 27625 9103 1422 9017 14331 18704 18704 1 IISTTASK Unmodified 819.47018 0.47018322 345 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 0 0 0 0 0 8 0 1 42.356 42.356 2 0.006494 10568 TMT1-7 104.44 17.483 191.58 283.75 202.22 206.04 201.58 311.92 181 282 212 203 212 298 1 1 1 1 1 1 19290 9104 345 9018 14332 18705 18705 1 IISYAQGFMLLR Unmodified 1410.7693 0.76934213 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 9 0 1 79.432 79.432 2 0.0019565 23378 TMT1-8 85.958 46.81 38.179 58.709 25.629 45.65 48.624 76.43 36 58 29 44 51 73 1 1 1 1 1 1 11529 9105 1260 9019 14333 18706 18706 1 IITEGASILR Unmodified 1071.6288 0.62880913 1618 Q08209-3;Q08209-2;Q08209;Q08209-4 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform yes no 0 0 0 0 0 6.5 0.5 1 1 58.087 58.087 2 2.4862E-06 17290 TMT1-5 158.61 69.567 199.21 284.64 181.9 271.33 222.99 210.03 188 283 196 262 232 203 2 2 2 2 2 2 35172 9106 1618 9020 14334;14335 18707;18708 18707 2 IITEGFEAAK Unmodified 1077.5706 0.57062555 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 5.5 0.5 1 1 57.796 57.796 2 5.7551E-14 17029 TMT1-4 180.8 86.498 475.17 713.88 505.59 435.4 527.49 657.59 449 709 527 435 545 631 3 3 3 3 3 3 68685 9107 1068 9021 14336;14337 18709;18710;18711 18709 3 IITITGTQDQIQNAQYLLQNSVK Unmodified 2588.381 0.38098087 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 8.67 0.471 1 2 79.34 79.34 3;4 1.9535E-47 23226 TMT1-8 148.69 131.61 176.81 240.16 196.11 184.79 188.22 241.94 167 240 203 183 196 232 4 4 4 4 4 4 104470 9108 1409;1410 9022 14338;14339;14340 18712;18713;18714;18715 18714 4 IITLAGPTNAIFK Unmodified 1357.7969 0.79693709 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 0 9 0 1 72.952 72.952 3 0.0001077 20884 TMT1-8 90.731 72.318 384.56 345.82 357.09 267.26 290.8 434.09 362 355 362 269 304 415 2 2 2 2 2 2 50061 9109 1844 9023 14341 18716;18717 18717 2 IITLEEGDIILTGTPK Unmodified 1711.9608 0.96076753 2033 Q6P587;Q6P587-2;Q6P587-3 FAHD1 Acylpyruvase FAHD1, mitochondrial yes no 0 0 0 0 0 6 0 1 77.058 77.058 3 1.3602E-06 24834 TMT1-5 94.487 83.872 46.696 42.825 50.397 44.453 33.78 53.402 44 44 51 44 36 51 1 1 1 1 1 1 7440.6 9110 2033 9024 14342 18718 18718 1 IITLTGPTNAIFK Unmodified 1387.8075 0.80750177 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 9 0 1 72.623 72.623 3 4.4915E-12 20751 TMT1-8 131.69 94.5 442.86 608.72 434.92 369.73 582.16 615.53 418 607 453 372 593 593 2 2 2 2 2 2 123820 9111 1843 9025 14343 18719;18720 18720 2 IIVAIMETNPSILEVK Unmodified 1769.0009 0.000858208 253 O75154-2;O75154;O75154-3 RAB11FIP3 Rab11 family-interacting protein 3 yes no 0 0 0 0 0 8 0 1 88.267 88.267 3 4.8184E-05 28464 TMT1-7 64.675 46.758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9112 253 9026 14344 18721 18721 1 IIVDELKQEVISTSSK Unmodified 1787.988 0.98804492 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 1 7 0 2 72.899 72.899 3;4 6.7277E-09 22627 TMT1-6 114.29 87.927 477.87 694.97 607.91 544.11 641.6 722.56 452 693 625 542 661 695 3 3 3 3 3 3 76908 9113 1478 9027 14345;14346 18722;18723;18724 18723 3 IIVEKPFGR Unmodified 1057.6284 0.6284152 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 1 9 0 1 51.064 51.064 3 0.0027063 12192 TMT1-8 88.136 37.227 826.49 1181 935.15 786.67 945.55 1233 781 1177 966 787 979 1182 1 1 1 1 1 1 87873 9114 655 9028 14347 18725 18725 1 IIVELVEFISPK Unmodified 1385.817 0.81700383 2422 Q96IV0-3;Q96IV0-2;Q96IV0;Q96IV0-5 NGLY1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase yes no 0 0 0 0 0 8 0 1 97.812 97.812 3 0.00028534 31914 TMT1-7 89.805 62.476 0 14.796 5.9839 15.767 14.431 15.578 0 14 7 15 15 15 0 1 1 1 1 1 1454.1 9115 2422 9029 14348 18726 18726 1 IIVENLFYPVTLDVLHQIFSK Unmodified 2487.3777 0.37773339 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 9 0 2 104.41 104.41 3;4 1.4523E-19 32636 TMT1-8 116.21 96.661 61.252 94.465 84.989 81.329 62.689 76.029 58 94 87 80 66 73 4 4 3 3 4 4 10652 9116 901 9030 14349;14350 18727;18728;18729;18730 18728 4 IIVFSACR Unmodified 964.51642 0.51642191 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 9 0 1 56.305 56.305 2 0.0024774 14293 TMT1-8 133.81 85.897 176.78 256.27 187.2 144.59 145.54 198.39 167 255 194 145 152 190 1 1 1 1 1 1 21643 9117 1616 9031 14351 18731 18731 1 IIVGDATEK Unmodified 944.51786 0.51786169 2418 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 0 0 5 0 1 48.992 48.992 2 0.015063 13597 TMT1-4 81.972 34.89 92.223 100.56 104.4 158.11 95.789 106 87 102 109 152 102 102 1 1 1 1 1 1 8643 9118 2418 9032 14352 18732 18732 1 IIVLGLLPR Unmodified 992.67464 0.67463711 1495 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes yes 0 0 0 0 0 9 0 1 76.411 76.411 2 0.00020176 22094 TMT1-8 142.11 113.6 237.8 312.31 344.08 256.72 195.36 425.09 225 314 347 257 212 404 2 2 2 2 2 2 48968 9119 1495 9033 14353 18733;18734 18733 2 IIWELIK Unmodified 913.56369 0.56368968 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 9 0 1 78.647 78.647 2 0.0095317 23080 TMT1-8 123.96 38.109 402.36 746.3 451.47 327.58 562.21 552.14 381 734 474 334 570 533 2 2 2 2 2 2 73939 9120 307 9034 14354 18735;18736 18736 2 IIWQFIK Unmodified 946.56402 0.56402403 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 9 0 1 76.717 76.717 2 0.0092013 22352 TMT1-8 146.21 81.175 741.47 1194.7 966.77 990.98 908.07 1442 702 1185 1004 975 959 1377 2 2 2 2 2 2 158010 9121 1164 9035 14355 18737;18738 18738 2 IIYGGSVTGATCK Unmodified 1325.6649 0.66493664 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 7.67 0.471 1 2 51.579 51.579 2;3 1.4147E-36 14184 TMT1-7 209.85 157.99 1384.4 1793.3 1324.6 1212.9 1572.1 1881.4 1306 1794 1380 1209 1618 1807 3 3 3 3 3 3 617360 9122 1352 9036 14356;14357;14358 18739;18740;18741 18740 3 IIYIVHDEVK Unmodified 1227.6863 0.68632401 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 0 6 0 1 55.347 55.347 3 0.00028076 16219 TMT1-5 102.52 71.338 129.69 236.09 184.35 119.7 199.31 219.24 123 233 189 123 203 211 2 2 2 2 2 2 11866 9123 892 9037 14359 18742;18743 18742 2 IIYIVHDEVKDK Unmodified 1470.8082 0.80823006 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 1 7 0 1 53.2 53.2 4 0.00015286 14812 TMT1-6 96.64 86.301 349.45 662.43 398.82 365.34 290.25 592.94 331 651 422 361 313 564 1 1 1 1 1 1 31061 9124 892 9038 14360 18744 18744 1 IIYLNQLLQEDSLNVADLTSLR Unmodified 2530.3643 0.36426817 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 94.94 94.94 3 7.8649E-37 30855 TMT1-7 148.85 133.53 37.942 90.092 58.714 37.053 64.929 100.48 36 88 59 37 67 96 3 4 3 3 4 4 60174 9125 2907 9039 14361;14362 18745;18746;18747;18748 18747 4 IIYVARNPK Phospho (STY) 1152.6056 0.60564464 309 O75897 SULT1C4 Sulfotransferase 1C4 yes yes 0 0 0 1 1 9 0 1 85.687 85.687 2 0.046988 25779 TMT1-8 43.704 13.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9126 309 9040 14363 18749 18749 24 1 IKAEYEGDGIPTVFVAVAGR Unmodified 2091.1001 0.10005498 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 1 7 0 1 67.103 67.103 3 5.1502E-07 20263 TMT1-6 88.071 69.286 99.88 84.268 93.639 56.337 78.497 75.578 94 87 94 58 80 73 1 1 1 1 1 1 22940 9127 843 9041 14364 18750 18750 1 IKDEVGAPGIVVGVSVDGK Unmodified 1838.0149 0.014928368 1516 P83111;P83111-2 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes no 0 0 0 0 1 6 0 1 61.034 61.034 3 0.0011142 18500 TMT1-5 53.059 35.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9128 1516 9042 14365 18751 18751 1 IKDIAWTEDSK Unmodified 1304.6612 0.66123147 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 1 6 0 1 53.193 53.193 3 0.015784 15370 TMT1-5 63.185 42.804 770.03 1166.7 1060.1 752.24 985.85 1141.3 729 1162 1079 763 1013 1097 2 2 2 2 2 2 57533 9129 250 9043 14366 18752;18753 18752 2 IKDLSTVEALQNLK Unmodified 1570.893 0.89302232 2534 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 1 8 0 1 64.737 64.737 4 0.00024562 19364 TMT1-7 79.004 51.355 191.8 249.83 193.85 220.9 251.57 328.61 181 250 203 217 261 315 2 2 2 2 2 2 37099 9130 2534 9044 14367 18754;18755 18754 2 IKEDEDDKTVLDLAVVLFETATLR Unmodified 2732.4484 0.44839173 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 2 9 0 1 96.345 96.345 5 0.011661 29732 TMT1-8 40.986 27.255 15.938 14.653 13.925 30.204 35.241 29.908 15 15 15 29 36 29 1 1 1 1 1 1 1538.8 9131 708 9045 14368 18756 18756 1 IKEIAVTVK Unmodified 999.63283 0.63283187 2496 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 8 0 1 50.805 50.805 3 0.0025043 13905 TMT1-7 93.345 34.975 484.67 698.75 545.42 556.44 532.58 773.64 458 696 568 548 559 740 1 1 1 1 1 1 37287 9132 2496 9046 14369 18757 18757 1 IKELQNAGDR Unmodified 1142.6044 0.60438529 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 6 0 1 37.506 37.506 3 0.025061 9207 TMT1-5 60.509 27.563 200.94 356.75 189.47 271.32 257.79 293.26 190 351 207 263 268 282 1 1 1 1 1 1 14688 9133 1833 9047 14370 18758 18758 1 IKELVVTQLGYDTR Unmodified 1633.9039 0.90392136 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 1 8 0 1 63.469 63.469 2 0.007963 18942 TMT1-7 82.069 53.111 30.589 35.256 58.925 35.044 42.091 37.175 29 36 58 36 43 36 1 1 1 1 1 1 7478 9134 1559 9048 14371 18759 18759 1 IKFDDVVQAIK Unmodified 1274.7234 0.72343779 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 1 8 0 1 63.555 63.555 3 0.0087065 18928 TMT1-7 68.676 33.981 107.95 137.29 135.37 115.9 150.08 104.45 102 138 138 116 152 102 1 1 1 1 1 1 17053 9135 750 9049 14372 18760 18760 1 IKFPDNPEK Unmodified 1086.571 0.5709599 2287 Q8WYA6-4;Q8WYA6 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 1 7 0 1 46.855 46.855 3 0.037179 12247 TMT1-6 56.783 20.823 123.04 151.57 111.28 101.32 187.66 156.68 116 152 116 102 189 152 1 1 1 1 1 1 7850.2 9136 2287 9050 14373 18761 18761 1 IKGCTDNLTLTVAR Unmodified 1560.8294 0.8293762 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 1 8 0 1 48.895 48.895 3 7.8766E-08 13116 TMT1-7 115.04 79.833 779.31 816.77 698.56 618.38 531.18 914.39 734 828 720 613 565 872 2 2 2 2 2 2 232560 9137 41 9051 14374 18762;18763 18762 2 IKGDVDVSAPK Unmodified 1127.6186 0.61863837 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 6 0 1 43.778 43.778 3 0.01323 11650 TMT1-5 64.65 7.6989 290.23 522.17 371.92 241.96 368.6 456.39 275 515 384 248 378 438 1 1 1 1 1 1 37837 9138 1632 9052 14375 18764 18764 1 IKGDVDVTGPK Unmodified 1127.6186 0.61863837 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 6.5 0.5 1 1 43.981 43.981 3 0.010192 11215 TMT1-6 66.393 0 200.08 291.58 208.94 189.32 255.5 286.93 189 290 218 189 262 276 2 2 2 2 2 2 49172 9139 1632 9053 14376;14377 18765;18766 18766 2 IKGDVPSVGLEGPDVDLQGPEAK Unmodified 2319.1958 0.19580586 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 62.05 62.05 4 2.9847E-11 18713 TMT1-4 91.729 76.959 139.34 97.063 123.81 61.668 106.23 144.08 131 102 123 65 109 138 1 1 1 1 1 1 17027 9140 1632 9054 14378 18767 18767 1 IKGEELSEANVR Unmodified 1343.7045 0.70449327 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 1 4.5 0.5 1 1 40.703 40.703 3 0.003586 10270 TMT1-4 73.834 46.17 468.74 532.84 477.55 337.92 452.82 525.41 442 538 487 343 465 505 2 2 2 2 2 2 41534 9141 1762 9055 14379;14380 18768;18769 18769 2 IKGEHPGLSIGDVAK Unmodified 1519.8358 0.83584179 588 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 1 5.75 2.77 1 2 1 46.55 46.55 4;5 3.1281E-07 12161 TMT1-6 104.26 86.768 2116.6 3426.8 1858.4 2320 3027.4 2735.3 1999 3384 2013 2276 3086 2647 5 5 5 5 5 5 526410 9142 588 9056 14381;14382;14383;14384 18770;18771;18772;18773;18774 18772 5 IKIIAPPER Unmodified 1035.6441 0.64406526 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 1 9 0 1 45.906 45.906 3 0.0039394 10117 TMT1-8 76.228 40.686 913.93 990.85 1007.6 644.9 757 1308.8 862 1005 1017 658 795 1248 2 2 2 2 2 2 67674 9143 1357;1479;1488;1952 9057 14385 18775;18776 18775 2 IKIIAPPERK Unmodified 1163.739 0.73902828 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 2 9 0 1 42.776 42.776 4 0.0070092 9002 TMT1-8 78.653 50.14 1392.5 1147.7 1406.2 904.59 912.16 1773.4 1311 1189 1407 920 970 1688 2 2 2 2 2 2 83289 9144 1357;1479;1488;1952 9058 14386 18777;18778 18777 2 IKITDLMEK Unmodified 1089.6104 0.61038187 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 1 8 0 1 59.415 59.415 3 0.027964 17317 TMT1-7 61.233 25.568 207.7 349.63 142.37 195.86 118.44 279.11 196 344 160 189 131 265 1 1 1 1 1 1 10278 9145 1079 9059 14387 18779 18779 1 IKLEGIITR Unmodified 1041.6546 0.65462995 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 1 9 0 1 52.175 52.175 3 0.037706 12630 TMT1-8 45.879 19.277 323 341.16 247.47 215.23 266.82 318.58 304 345 258 215 275 306 1 1 1 1 1 1 19503 9146 2944 9060 14388 18780 18780 1 IKNEVDSTLTFR Unmodified 1421.7514 0.75144346 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 1 7 0 1 53.079 53.079 3 0.0013046 14721 TMT1-6 79.744 54.889 333.79 596.74 381.67 330.6 506.84 607.02 316 588 401 332 519 583 1 1 1 1 1 1 39193 9147 834 9061 14389 18781 18781 1 IKNQADCIPFFR Unmodified 1507.7606 0.76056836 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 1 9 0 1 57.369 57.369 3 2.0956E-07 14635 TMT1-8 117.27 80.59 145.76 189.57 229.08 147.97 240.21 239.39 138 191 229 152 244 231 1 1 1 1 1 1 40048 9148 489 9062 14390 18782 18782 1 IKPVLMMNK Unmodified 1072.6137 0.61369311 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 9 0 1 54.091 54.091 3 0.0033675 13399 TMT1-8 82.749 46.416 202.75 368.62 235.86 306.73 320.2 530.26 192 363 252 299 337 506 1 1 1 1 1 1 11496 9149 685 9063 14391 18783 18783 1 IKSEHPGLSIGDTAK Unmodified 1551.8257 0.82567103 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 1 7 0.816 1 1 1 41.876 41.876 3;4 4.3861E-06 10502 TMT1-6 81.651 67.621 636.74 956.61 737.12 600.62 772.52 855.27 602 951 762 603 793 823 2 2 2 2 2 2 55227 9150 900 9064 14392;14393;14394 18784;18785;18786 18785 3 IKVDEFVTHNLSFDEINK Unmodified 2147.0899 0.089884225 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 1 7 0 1 64.918 64.918 4 0.0012243 19445 TMT1-6 59.372 36.043 84.837 101.43 82.647 111.67 135.36 112.33 80 102 87 109 138 109 1 1 1 1 1 1 22434 9151 660 9065 14395 18787 18787 1 IKVDNHLFNK Unmodified 1226.6772 0.6771563 1152;1153;1503 P78356;P78356-2;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 9 0 1 47.149 47.149 4 0.0028857 10615 TMT1-8 86.344 59.558 260.51 360.9 273.64 239.84 211.93 330.81 246 360 284 238 224 316 1 1 1 1 1 1 36691 9152 1503;1152;1153 9066 14396 18788 18788 1 IKVPVDWNR Unmodified 1125.6295 0.62947783 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 1 9 0 1 51.41 51.41 2 0.023772 12339 TMT1-8 95.311 53.082 68.361 171.62 87.207 86.642 172.89 149.64 65 167 94 87 174 145 1 1 1 1 1 1 19863 9153 690 9067 14397 18789 18789 1 IKVSGLGEK Unmodified 929.55458 0.55458155 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 0 1 44.414 44.414 3 0.0084401 11368 TMT1-7 76.302 34.193 1034 1515.9 941.46 874.7 661.82 2341.2 976 1505 995 863 748 2214 1 1 1 1 1 1 90460 9154 831 9068 14398 18790 18790 1 IKWGDAGAEYVVESTGVFTTMEK Unmodified 2517.2097 0.20974136 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 1 7 0 1 76.271 76.271 3 2.5511E-17 23854 TMT1-6 106.55 87.988 84.985 85.648 71.151 50.917 31.101 122.77 80 87 73 51 36 116 2 2 2 2 2 2 17810 9155 472 9069 14399 18791;18792 18791 2 IKYPENFFLLR Unmodified 1438.7973 0.79727144 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 1 9 0 1 66.14 66.14 2 0.044906 18153 TMT1-8 58.699 38.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9156 1044;1413;1414 9070 14400 18793 18793 1 ILAAILHLGNIEFVETEEGGLQK Unmodified 2493.3479 0.34788983 20 B0I1T2;B0I1T2-4;B0I1T2-3 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 8 0 1 91.865 91.865 4 3.5182E-09 29791 TMT1-7 80.238 66.646 46.549 65.08 56.32 51.565 43.655 0 44 65 58 51 44 0 2 2 2 2 2 0 4489.4 9157 20 9071 14401 18794;18795 18795 2 ILACDDLDEAAR Unmodified 1360.6293 0.62927941 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 54.28 54.28 2 3.229E-10 16914 TMT1-2 160.33 115.7 53.664 79.655 110.44 55.044 94.005 82.598 51 80 109 58 95 80 2 2 2 2 2 2 19388 9158 2831 9072 14402;14403 18796;18797 18797 2 ILACGGDGTVGWILSTLDQLR Unmodified 2244.1573 0.15725228 1722 Q13574-6;Q13574-2;Q13574-4;Q13574-7;Q13574-5;Q13574-3;Q13574 DGKZ Diacylglycerol kinase zeta yes no 0 0 0 0 0 9 0 1 100.16 100.16 3 0.0055745 31162 TMT1-8 44.587 32.795 0 23.044 21.754 14.974 6.6342 0 0 22 22 15 7 0 0 1 1 1 1 0 1917.1 9159 1722 9073 14404 18798 18798 1 ILADATAK Unmodified 801.45962 0.45961853 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.2 2.14 1 3 1 48.301 48.301 2;3 8.8284E-08 13034 TMT1-6 172.14 85.279 6119.1 8180.9 7343.3 5199.3 6607 8687 5782 8192 7483 5271 6830 8326 7 7 7 7 7 7 1669700 9160 3010 9074 14405;14406;14407;14408;14409 18799;18800;18801;18802;18803;18804;18805 18804 7 ILADQQDK Unmodified 929.48181 0.48181054 2955 Q9Y265 RUVBL1 RuvB-like 1 yes yes 0 0 0 0 0 5 0 1 42.952 42.952 3 0.0028684 11218 TMT1-4 62.2 43.469 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9161 2955 9075 14410 18806 18806 1 ILAEGGGAK Unmodified 814.45487 0.45486751 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 6 0 1 42.797 42.797 3 0.00029803 11303 TMT1-5 118.06 55.345 311.78 247.55 228.11 218.6 149.07 331.54 293 256 235 215 163 315 1 1 1 1 1 1 12248 9162 1180 9076 14411 18807 18807 1 ILAFPCNQFGK Unmodified 1293.654 0.65397802 1048 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 0 0 9 0 1 66.99 66.99 3 3.3345E-05 18471 TMT1-8 102.06 71.172 177.38 155.4 171.94 137.24 177.89 149.49 167 160 174 138 181 145 1 1 1 1 1 1 24797 9163 1048 9077 14412 18808 18808 1 ILAGDKNYITMDELR Unmodified 1750.8924 0.89237039 672 P12814;P12814-3;P12814-2 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4 3 1 1 61.768 61.768 3 2.9463E-10 18049 TMT1-6 118.2 101.67 960.72 1260.8 1031 892.77 1044.7 1523.4 907 1262 1064 891 1088 1457 2 2 2 2 2 2 136920 9164 672 9078 14413;14414 18809;18810 18810 2 ILAGILHLGNVGFTSR Unmodified 1666.9519 0.9518746 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 MYO5A Unconventional myosin-Va yes no 0 0 0 0 0 9 0 1 74.912 74.912 3 0.0031211 21601 TMT1-8 53.995 33.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9165 3016 9079 14415 18811 18811 1 ILAGLLR Unmodified 754.50651 0.50650915 2440 Q96P48-3;Q96P48 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 65.158 65.158 2 0.010311 17716 TMT1-8 120.76 21.528 77.325 109.49 75.977 81.344 83.357 113.82 73 109 80 80 87 109 1 1 1 1 1 1 18634 9166 2440 9080 14416 18812 18812 1 ILAGPAGDSNVVK Unmodified 1239.6823 0.68230126 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 52.947 52.947 2;3 1.6321E-12 14676 TMT1-6 157.38 98.133 260.99 374.28 362.58 265.43 371.02 384.9 247 374 368 269 379 371 2 2 2 2 2 2 66681 9167 471 9081 14417;14418 18813;18814 18814 2 ILAIGLINEALDEGDAQK Unmodified 1882.0048 0.004757612 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5.5 0.5 1 1 86.769 86.769 3 9.2784E-27 28602 TMT1-5 155.1 138.02 130.99 228.01 153.21 124.97 185.73 181.25 124 225 160 124 189 175 3 3 3 2 3 3 45981 9168 1139 9082 14419;14420 18815;18816;18817 18817 3 ILALASFEVEK Unmodified 1218.686 0.68598966 2290 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 0 8 0 1 75.599 75.599 2 2.2655E-05 23659 TMT1-7 118.4 68.28 38.047 65.895 41.863 35.904 50.428 36.937 36 65 44 36 51 36 1 1 1 1 1 1 6820 9169 2290 9083 14421 18818 18818 1 ILALCMGNHELYMR Unmodified 1719.8259 0.82588751 894;1015 P26038;P35241;P35241-5;P35241-4 MSN;RDX Moesin;Radixin no no 0 0 0 0 0 9 0 1 61.628 61.628 2 2.6071E-09 16359 TMT1-8 112.94 76.604 30.849 28.426 20.951 22.276 27.727 46.113 29 29 22 22 29 44 1 1 1 1 1 1 6643.7 9170 894;1015 9084 14422 18819 18819 1 ILALDCGLK Unmodified 1001.558 0.55795237 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 64.05 64.05 2 0.0064122 19119 TMT1-7 95.099 61.021 76.981 123.65 121.8 78.182 106.28 120.62 73 123 123 80 109 116 1 1 1 1 1 1 9340.2 9171 917 9085 14423 18820 18820 1 ILAPLLILDK Unmodified 1107.7267 0.72673226 3026 Q9Y587 AP4S1 AP-4 complex subunit sigma-1 yes yes 0 0 0 0 0 9 0 1 85.554 85.554 2 0.00041125 25727 TMT1-8 96.668 49.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9172 3026 9086 14424 18821 18821 1 ILAQATSDLVNAIK Unmodified 1455.8297 0.82969378 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 3.08 1 1 1 1 78.655 78.655 3 2.1293E-27 25439 TMT1-7 180.17 144.72 4451.4 5112.7 4947.9 3808.4 4872 5453.2 4200 5165 5034 3838 5004 5246 11 11 11 11 11 11 808210 9173 3010 9087 14425;14426;14427;14428 18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832 18825 11 ILAQATSDLVNAIKADAEGESDLENSR Unmodified 2829.3992 0.39920971 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7 1 1 1 88.178 88.178 4 9.8732E-12 28420 TMT1-7 88.517 79.936 54.044 96.902 31.93 45.294 47.578 107.37 51 95 37 44 51 102 2 2 2 2 2 2 9981.5 9174 3010 9088 14429;14430 18833;18834 18834 2 ILASPVELALVVMK Unmodified 1481.8891 0.88912291 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 9 0 1 92.565 92.565 3 2.2138E-05 28394 TMT1-8 91.858 69.137 46.428 88.489 56.705 35.69 72.923 52.285 44 87 59 37 73 51 2 2 2 2 2 2 8462.4 9175 2789 9089 14431 18835;18836 18836 2 ILASTQFEPTAAR Unmodified 1403.7409 0.74087877 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 54.867 54.867 3 6.1705E-06 15409 TMT1-6 107.65 86.805 46.441 88.524 54.591 58.809 70.797 83.26 44 87 58 58 73 80 1 1 1 1 1 1 14688 9176 2791 9090 14432 18837 18837 1 ILATGANVILTTGGIDDMCLK Unmodified 2175.1279 0.12792599 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 8 0 1 82.528 82.528 3 4.0416E-11 26315 TMT1-7 102.98 86.234 30.632 44.011 44.218 13.358 21.358 30.305 29 44 44 15 22 29 1 1 1 1 1 1 8087.2 9177 770 9091 14433 18838 18838 1 ILATPPQEDAPSVDIANIR Unmodified 2019.0637 0.063669474 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 4.67 0.471 1 2 66.592 66.592 3;4 8.3491E-45 20454 TMT1-4 182.7 160.84 191.02 323.22 262.07 193.84 311.57 171.24 181 320 269 197 312 168 4 4 4 4 4 3 212490 9178 937 9092 14434;14435;14436 18839;18840;18841;18842 18840 4 ILAYTEGLHGK Unmodified 1200.6503 0.65027285 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 7 0 1 51.74 51.74 3 0.0063696 14166 TMT1-6 65.695 38.532 122.86 151.07 142.1 114.67 194.08 165.02 116 152 145 116 196 160 1 1 1 1 1 1 12818 9179 1229 9093 14437 18843 18843 1 ILCFYGPPGVGK Unmodified 1306.6744 0.67437911 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 9 0 1 68.586 68.586 3 0.0090941 19118 TMT1-8 55.426 32.893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9180 1042 9094 14438 18844 18844 1 ILDATPACLP Unmodified 1069.5478 0.54778161 3039 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 0 0 0 5 0 1 72.465 72.465 2 0.01489 22889 TMT1-4 78.496 56.348 23.264 44.924 19.326 37.377 43.544 22.209 22 44 22 36 44 22 1 1 1 1 1 1 5524.1 9181 3039 9095 14439 18845 18845 1 ILDDDTIITTLENLK Unmodified 1715.9193 0.91929665 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 92.2 92.2 3 0.0012881 30424 TMT1-5 66.246 36.557 23.368 21.469 21.744 14.694 21.553 22.837 22 22 22 15 22 22 1 1 1 1 1 1 4767.9 9182 1763 9096 14440 18846 18846 1 ILDDDTIITTLENLKR Unmodified 1872.0204 0.020407676 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 7 0 1 83.644 83.644 3 1.6563E-08 26683 TMT1-6 109.64 78.601 77.204 117.79 89.26 136.34 80.828 113.89 73 117 95 131 87 109 2 2 2 2 2 2 12388 9183 1763 9097 14441 18847;18848 18847 2 ILDDWGETCK Unmodified 1235.5492 0.54923818 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 0 5 0 1 61.919 61.919 3 0.00040484 18650 TMT1-4 100.48 72.735 326.78 488.58 388.24 353.83 412.87 479.64 309 486 402 352 426 461 2 2 2 2 2 2 46475 9184 1313 9098 14442 18849;18850 18850 2 ILDEIEEHNIK Unmodified 1351.6983 0.69834526 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 3 0 1 58.746 58.746 3 8.6536E-06 18669 TMT1-2 116.01 67.371 138.49 243.64 142.61 146.8 169.61 164.65 131 240 152 145 174 159 2 2 2 2 2 2 17069 9185 1812 9099 14443 18851;18852 18851 2 ILDELLQTCVDPEDCPVCEVAGR Unmodified 2687.2241 0.22408757 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 2 83.724 83.724 3;4 3.5227E-06 28204 TMT1-2 67.364 60.594 7.4147 7.3287 23.327 0 7.0727 14.722 7 7 22 0 7 14 1 1 2 0 1 2 6657.5 9186 471 9100 14444;14445 18853;18854 18854 2 ILDETQEAVEYQR Unmodified 1592.7682 0.76821574 2406 Q96FZ7 CHMP6 Charged multivesicular body protein 6 yes yes 0 0 0 0 0 2 0 1 55.718 55.718 3 0.00011575 17084 TMT1-1 91.307 68.833 31.528 66.11 55.269 75.464 54.839 68.791 30 65 58 73 58 66 2 2 2 2 2 2 15323 9187 2406 9101 14446 18855;18856 18855 2 ILDILGETCK Unmodified 1160.6111 0.61111015 1853;1753 Q14151;Q15424-2;Q15424;Q15424-4;Q15424-3 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 0 0 7 0 1 72.692 72.692 2 0.0003137 22469 TMT1-6 123.63 69.017 53.882 64.07 87.13 64.836 54.008 107.19 51 65 87 65 58 102 1 1 1 1 1 1 9142.9 9188 1753;1853 9102 14447 18857 18857 1 ILDLEDLER Unmodified 1114.587 0.58700389 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 3 0.816 1 1 1 69.563 69.563 2 0.00015392 21838 TMT1-3 148.14 52.117 144.07 214.74 130.25 146.68 157.03 135.17 136 213 139 144 161 131 3 3 3 3 3 3 39927 9189 3011 9103 14448;14449;14450 18858;18859;18860 18860 3 ILDLIESGKK Unmodified 1114.6598 0.65977491 386 P00352 ALDH1A1 Retinal dehydrogenase 1 yes yes 0 0 0 0 1 8 0 1 64.234 64.234 3 0.008911 19209 TMT1-7 71.555 8.6652 261.67 353.51 265.48 286.94 232.54 337.68 247 353 278 281 246 323 1 1 1 1 1 1 16391 9190 386 9104 14451 18861 18861 1 ILDNTSEPQPGEAR Unmodified 1525.7372 0.73724996 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 2 0 1 44.456 44.456 2 1.2102E-11 12729 TMT1-1 111.12 96.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9191 1219 9105 14452 18862 18862 1 ILDQGEDFPASEMTR Unmodified 1707.7774 0.77740021 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 3 0 1 61.704 61.704 3 0.00090529 19970 TMT1-2 69.485 55.132 23.297 28.826 27.49 45.809 34.267 37.398 22 29 29 44 36 36 1 1 1 1 1 1 13863 9192 944 9106 14453 18863 18863 1 ILDQSEAEK Unmodified 1031.5135 0.5135046 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 3.5 0.5 1 1 45.744 45.744 2 0.00015811 12538 TMT1-3 147.95 74.016 207.47 317.7 207.69 181.41 215.1 285.95 196 315 218 181 223 274 2 2 2 2 2 2 25184 9193 1796 9107 14454;14455 18864;18865 18865 2 ILDSVGIEADDDR Unmodified 1416.6733 0.67325272 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 0 2 0 2 61.193 61.193 2;3 1.5272E-12 19327 TMT1-1 158.02 147.65 93.301 115.62 90.745 104.1 105.09 120.66 88 116 95 102 109 116 2 2 2 2 2 2 19085 9194 495 9108 14456;14457 18866;18867 18866 2 ILDSVGIEADDDRLNK Unmodified 1771.8952 0.89520716 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 1 4.33 0.471 2 1 59.779 59.779 3;4 3.1485E-10 17806 TMT1-4 95.767 64.241 385.15 430.74 366.63 303.07 448.87 443.44 363 435 377 305 457 428 3 3 3 3 3 3 179310 9195 495 9109 14458;14459;14460 18868;18869;18870;18871 18871 4 ILDVLEEIPK Unmodified 1167.6751 0.67509062 1902 Q16718-2;Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 0 5.5 0.5 1 1 82.404 82.404 3 0.0037453 26758 TMT1-4 76.228 50.842 131.49 151.69 133.98 100.71 148.43 172.72 124 153 137 102 152 166 3 3 3 3 3 3 26285 9196 1902 9110 14461;14462 18872;18873;18874 18873 3 ILDWHVANTDK Unmodified 1310.6619 0.66190017 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 7 0 1 55.851 55.851 3 0.0049308 15854 TMT1-6 68.44 41.342 123.01 160.12 109.36 133.03 193.53 156.51 116 160 116 131 196 152 1 1 1 1 1 1 17032 9197 1053 9111 14463 18875 18875 1 ILDWHVANTDKK Unmodified 1438.7569 0.75686319 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 7.5 0.5 1 1 50.89 50.89 4 0.0002686 13852 TMT1-6 89.356 61.947 3527.7 6134.2 4593.7 3737 5026.3 6384.8 3342 6061 4756 3756 5179 6124 2 2 2 2 2 2 238030 9198 1053 9112 14464;14465 18876;18877 18876 2 ILEAHQNVAQLSLAEAQLR Unmodified 2103.1437 0.14365113 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 6.6 1.02 1 1 2 1 60.325 60.325 3;4 5.8765E-52 17978 TMT1-5 192.72 168.18 1172.2 1449.9 1213.2 1040.8 1312.2 1486.9 1106 1456 1250 1041 1349 1430 10 10 10 10 10 10 665470 9199 2112 9113 14466;14467;14468;14469;14470 18878;18879;18880;18881;18882;18883;18884;18885;18886;18887 18880 10 ILEALASSEDVRK Unmodified 1429.7777 0.77765821 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 1 6 0 1 59.88 59.88 3 0.00022181 18046 TMT1-5 68.033 40.919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9200 2882 9114 14471 18888 18888 1 ILEDNSIPQVK Unmodified 1254.682 0.68196691 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 5 0 1 58.547 58.547 3 0.0085952 17322 TMT1-4 63.408 30.91 130.35 166.68 132.41 140.19 146.33 181.31 123 167 138 138 152 174 1 1 1 1 1 1 20001 9201 645 9115 14472 18889 18889 1 ILEDQEENPLPAALVQPHTGK Unmodified 2298.1856 0.18557552 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 5 0 2 62.782 62.782 4;5 1.0891E-10 18999 TMT1-4 99.569 77.558 198.8 298.62 238.55 219.58 238.15 294.88 188 297 247 218 247 283 3 3 3 3 3 3 29389 9202 349 9116 14473;14474 18890;18891;18892 18892 3 ILEDTQFVDGYK Unmodified 1426.698 0.6980109 1807 Q14C86-3;Q14C86-4;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 66.467 66.467 3 1.6911E-05 20445 TMT1-4 105.25 84.022 46.252 119.3 60.315 58.911 47.245 98.856 44 116 65 58 51 94 1 1 1 1 1 1 8560 9203 1807 9117 14475 18893 18893 1 ILEFFGLK Unmodified 965.5586 0.5586043 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 9 0 1 84.414 84.414 2 0.0017272 25305 TMT1-8 138.9 69.98 1533.7 2732.7 2131 1744.3 2378.8 2474.5 1454 2699 2200 1753 2432 2385 3 3 3 3 3 3 253400 9204 530 9118 14476 18894;18895;18896 18895 3 ILEFVGR Unmodified 832.48069 0.48068833 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P50225-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 7.5 0.5 1 1 61.498 61.498 2 0.0066182 18059 TMT1-6 131.3 45.411 1020.1 1068.8 945.89 650.4 776.65 1064.1 961 1084 965 660 806 1019 3 3 3 3 3 3 118800 9205 617;1214 9119 14477;14478 18897;18898;18899 18897 3 ILELDQFK Unmodified 1004.5542 0.5542472 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 6.5 0.5 1 1 68.396 68.396 3 0.0046553 21364 TMT1-5 86.095 29.374 238.07 381.06 240.33 234.21 326.22 360.59 225 377 254 233 334 347 2 2 2 2 2 2 32880 9206 675 9120 14479;14480 18900;18901 18900 2 ILELEDDIQTISEK Unmodified 1644.8458 0.84579735 2819 Q9P1Z2-2;Q9P1Z2-3;Q9P1Z2;Q9P1Z2-4 CALCOCO1 Calcium-binding and coiled-coil domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 79.17 79.17 3 1.7978E-05 25645 TMT1-3 94.728 70.169 84.641 92.248 123.29 86.021 91.518 113.58 80 94 123 87 95 109 2 2 2 2 2 2 7894.6 9207 2819 9121 14481 18902;18903 18902 2 ILELLRPDPNTGK Unmodified 1464.83 0.83002813 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 1 8 0 1 63.649 63.649 3 0.00076313 19003 TMT1-7 79.886 53.843 115.65 144.87 96.467 103.76 104.85 128.13 109 145 102 102 109 123 1 1 1 1 1 1 10854 9208 1850 9122 14482 18904 18904 1 ILENEKDLEEAEEYK Unmodified 1850.8786 0.87855405 265 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 0 1 4 0 1 58.305 58.305 3 2.0142E-05 17582 TMT1-3 92.773 64.14 61.161 125.51 74.053 104.79 121.29 74.357 58 123 80 102 123 73 1 1 1 1 1 1 15216 9209 265 9123 14483 18905 18905 1 ILEPGLNILIPVLDR Unmodified 1674.008 0.0079924964 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 8 0 2 90.646 90.646 2;3 7.7272E-10 29283 TMT1-7 119.21 98.214 46.654 42.706 57.657 51.653 34.752 45.912 44 44 58 51 37 44 2 2 2 2 2 2 25831 9210 2890 9124 14484;14485 18906;18907 18906 2 ILEQQNSSR Unmodified 1073.5465 0.54653606 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 4 0 1 34.254 34.254 2 0.0019098 7989 TMT1-3 110.47 70.472 53.851 111.47 52.091 83.182 61.3 83.531 51 109 58 80 65 80 1 1 1 1 1 1 21165 9211 1883 9125 14486 18908 18908 1 ILEQSGEWWK Unmodified 1274.6295 0.62953741 504 P06239-3;P06239;P06239-2 LCK Tyrosine-protein kinase Lck yes no 0 0 0 0 0 7 0 1 67.806 67.806 3 0.0015903 20532 TMT1-6 86.879 55.743 69.094 72.207 48.205 51.557 69.811 121.66 65 73 51 51 73 116 1 1 1 1 1 1 7763.2 9212 504 9126 14487 18909 18909 1 ILETLYTLGK Unmodified 1149.6645 0.66452593 1997 Q5W0V3;Q5W0V3-2 FAM160B1 Protein FAM160B1 yes no 0 0 0 0 0 9 0 1 78.284 78.284 2 1.5183E-05 22908 TMT1-8 137.05 80.499 69.153 48.627 58.268 27.421 42.683 60.61 65 51 58 29 44 58 1 1 1 1 1 1 6429.3 9213 1997 9127 14488 18910 18910 1 ILETTTFFQR Unmodified 1254.6608 0.66083754 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 8 0 1 65.914 65.914 2 0.039986 19815 TMT1-7 66.27 43.557 77.536 93.889 53.787 66.11 91.936 97.581 73 94 58 65 94 94 1 1 1 1 1 1 20291 9214 2789 9128 14489 18911 18911 1 ILETWGELLSK Unmodified 1287.7075 0.70745338 3004 Q9Y3P9;Q9Y3P9-2 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 8 0 1 84.668 84.668 2 0.0056063 27075 TMT1-7 85.813 52.813 23.258 36.271 27.789 29.086 50.742 36.928 22 36 29 29 51 36 1 1 1 1 1 1 5718.1 9215 3004 9129 14490 18912 18912 1 ILEVHIDK Unmodified 965.55458 0.55458155 976 P31689-2;P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 0 6 0 1 52.407 52.407 3 0.0028607 15123 TMT1-5 93.551 10.546 122.63 200.07 139.47 107.74 164.07 164.81 116 198 145 109 167 159 1 1 1 1 1 1 11748 9216 976 9130 14491 18913 18913 1 ILEVHVDK Unmodified 951.53893 0.53893149 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 48.823 48.823 3 0.0066966 13583 TMT1-4 78.934 33.853 361.63 429.37 352.32 313.08 368.87 444.66 341 432 364 312 381 427 2 2 2 2 2 2 41461 9217 245 9131 14492;14493 18914;18915 18914 2 ILEVNHVNVEGATHK Unmodified 1658.874 0.87401821 2435 Q96L92-3;Q96L92 SNX27 Sorting nexin-27 yes no 0 0 0 0 0 6 0 1 44.122 44.122 4 0.0018209 11804 TMT1-5 63.681 43.842 123 160.09 110.73 102.36 134.47 150.73 116 160 116 102 138 145 1 1 1 1 1 1 10357 9218 2435 9132 14494 18916 18916 1 ILEVVKDK Unmodified 942.57498 0.57498264 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 1 7 0 1 54.368 54.368 3 0.0074611 15203 TMT1-6 87.913 37.035 837.79 1294.2 924.26 950.05 836.26 1242.5 792 1284 969 934 882 1188 2 2 2 2 2 2 119010 9219 815 9133 14495 18917;18918 18917 2 ILEVVNQIQDEER Unmodified 1583.8155 0.81550028 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 3.5 0.5 1 1 70.368 70.368 3 1.1955E-16 22226 TMT1-3 170.95 132.81 123.94 190.95 107.13 165.77 145.1 213.32 117 189 117 160 153 204 4 4 4 4 4 4 65234 9220 333 9134 14496;14497 18919;18920;18921;18922 18921 4 ILFEITAGALGK Unmodified 1231.7176 0.71762413 2999 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 CHMP3 Charged multivesicular body protein 3 yes no 0 0 0 0 0 9 0 1 84.44 84.44 3 2.5779E-07 25244 TMT1-8 110.39 76.134 39.06 50.547 64.823 51.117 40.531 91.585 37 51 65 51 44 87 2 2 2 2 2 2 4323.7 9221 2999 9135 14498 18923;18924 18923 2 ILFFNTPK Unmodified 978.55385 0.55385327 1158 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 0 9 0 1 68.628 68.628 2 0.001579 19104 TMT1-8 141.78 90.094 146.03 221.64 155.04 90.836 141.71 168.65 138 220 160 94 145 162 1 1 1 1 1 1 21438 9222 1158 9136 14499 18925 18925 1 ILFHFAK Unmodified 874.50651 0.50650915 2794 Q9NZ52-3;Q9NZ52-4;Q9NZ52-2;Q9NZ52 GGA3 ADP-ribosylation factor-binding protein GGA3 yes no 0 0 0 0 0 9 0 1 56.807 56.807 3 0.004743 14463 TMT1-8 88.591 59.017 37.651 112.28 69.125 65.885 55.316 67.712 36 109 73 65 58 65 1 1 1 1 1 1 4610.7 9223 2794 9137 14500 18926 18926 1 ILFIFIDSDHTDNQR Unmodified 1832.9057 0.90571227 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 8 1 1 1 75.613 75.613 3 8.9709E-11 23630 TMT1-6 123.36 102.06 245.92 248.72 296.19 323.47 226.84 424.19 232 254 302 316 245 404 2 2 2 2 2 2 28921 9224 530 9138 14501;14502 18927;18928 18927 2 ILFIYAK Unmodified 866.52658 0.52657589 2759 Q9NVG8;Q9NVG8-3 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 9 0 1 70.16 70.16 2 0.015048 19701 TMT1-8 99.511 58.565 92.384 92.379 84.196 88.205 99.296 97.371 87 94 87 87 102 94 1 1 1 1 1 1 10175 9225 2759 9139 14503 18929 18929 1 ILFLDPSGK Unmodified 988.55933 0.55933258 379 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 0 9 0 1 71.167 71.167 2 0.0062593 20112 TMT1-8 98.458 33.701 200.12 274.4 217.91 180.99 262.97 263.26 189 274 225 182 268 254 2 2 2 2 2 2 21056 9226 379 9140 14504 18930;18931 18930 2 ILFLDVLFPLVVDK Unmodified 1629.9746 0.9745671 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 9 0 1 108.74 108.74 3 2.7586E-05 33801 TMT1-8 90.412 67.533 4.1716 34.652 10.708 18.713 17.18 22.962 4 33 11 18 18 22 1 2 1 2 2 2 3338.1 9227 2789 9141 14505 18932;18933 18933 2 ILFTEATR Unmodified 949.52328 0.52328142 1158 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 0 7 0 1 54.162 54.162 2 0.012099 15157 TMT1-6 97.033 61.4 232.24 291.44 214.93 172.73 246.58 294.64 219 292 223 174 253 283 1 1 1 1 1 1 22690 9228 1158 9142 14506 18934 18934 1 ILGADTSVDLEETGR Unmodified 1574.7788 0.77878042 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 3 0.707 1 2 1 59.515 59.515 2;3 8.3044E-36 18796 TMT1-1 204.13 165.34 362.47 471.82 355.87 321.85 414.13 546.77 342 472 370 321 428 524 8 8 8 8 8 8 250190 9229 888 9143 14507;14508;14509;14510 18935;18936;18937;18938;18939;18940;18941;18942 18936 8 ILGAVAK Unmodified 670.43776 0.43776088 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6.75 3.34 1 1 2 51.162 51.162 2;3 0.01073 13933 TMT1-7 106.84 25.165 2118.1 2947.1 2734.5 2100.1 2643.2 3162 2003 2947 2787 2116 2723 3037 7 7 7 7 7 7 1087600 9230 776 9144 14511;14512;14513;14514 18943;18944;18945;18946;18947;18948;18949 18945 7 ILGGHLDAK Unmodified 922.52362 0.52361577 400 P00738-2;P00738;P00739;P00739-2 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 0 0 0 0 0 7 0 1 44.542 44.542 3 0.0097549 11307 TMT1-6 66.299 34.158 206.45 415.24 296.25 175.11 269.17 456.03 196 408 305 181 280 435 1 1 1 1 1 1 47045 9231 400 9145 14515 18950 18950 1 ILGGSVLHLVLALR Unmodified 1459.9239 0.92386894 1879 Q15843 NEDD8 NEDD8 yes yes 0 0 0 0 0 9 0 1 79.621 79.621 3 1.2761E-11 23387 TMT1-8 122.39 92.583 61.206 102.97 85.45 49.326 70.427 106.72 58 102 87 51 73 102 2 2 2 2 2 2 19533 9232 1879 9146 14516 18951;18952 18951 2 ILGGVISAISEAAAQYNPEPPPPR Unmodified 2446.2856 0.28562392 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 91.812 91.812 4 1.3247E-57 27981 TMT1-8 163.96 148.01 165.12 214.29 199.75 139.44 205.37 229.73 156 215 203 142 210 221 7 7 7 7 7 7 66468 9233 475 9147 14517;14518 18953;18954;18955;18956;18957;18958;18959 18958 7 ILGILALIDEGETDWK Unmodified 1784.956 0.95601651 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 100.8 100.8 3 9.5299E-19 32807 TMT1-6 152.16 132.32 82.025 59.608 49.603 35.665 38.65 75.649 77 62 51 36 41 72 3 3 3 3 3 3 7248.4 9234 2633 9148 14519;14520 18960;18961;18962 18961 3 ILGIPVIVTEQYPK Unmodified 1568.9178 0.91778051 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 8.67 0.471 1 2 77.29 77.29 2;3 2.9785E-12 22466 TMT1-8 133.23 108.44 215.29 245.74 216.3 229.79 230.62 256.72 203 248 224 226 239 247 4 4 4 4 4 4 44617 9235 2382 9149 14521;14522;14523 18963;18964;18965;18966 18965 4 ILGLAIESQDAGIK Unmodified 1426.8031 0.80314468 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 7 0 1 70.33 70.33 3 8.6893E-15 21500 TMT1-6 135.58 97.394 154.14 149.38 117.02 141.96 100.86 193.27 145 152 123 138 109 184 1 1 1 1 1 1 66885 9236 45 9150 14524 18967 18967 1 ILGLGDLGVYGMGIPVGK Unmodified 1757.975 0.97497781 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 9 0 2 86.65 86.65 3;4 2.8277E-14 26139 TMT1-8 110.35 89.966 146.26 203.92 132.24 92.027 150.65 150.27 138 203 138 94 153 145 3 3 3 3 3 3 23587 9237 859 9151 14525;14526 18968;18969;18970 18968 3 ILGLLAAMLPPLK Unmodified 1348.8516 0.8516152 155 O43149;O43149-2 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 103.78 103.78 3 0.00016039 32388 TMT1-8 87.298 54.177 15.899 29.295 29.27 30.363 36.281 29.879 15 29 30 30 37 29 1 2 2 2 2 2 1849.3 9238 155 9152 14527 18971;18972 18972 2 ILGLLDAYLK Unmodified 1117.6747 0.67469669 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 9 0 1 88.015 88.015 2 3.2511E-12 26719 TMT1-8 176.79 93.586 376.82 391.03 357.2 350.62 275.37 528.34 355 397 368 345 296 503 3 3 3 3 3 3 78694 9239 904 9153 14528 18973;18974;18975 18974 3 ILGLLENF Unmodified 917.52222 0.52221879 2287 Q8WYA6-4;Q8WYA6;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 0 7 0 1 97.911 97.911 2 0.030152 31806 TMT1-6 81.672 81.672 15.947 14.676 12.478 38.357 13.135 23.077 15 15 14 36 15 22 1 1 1 1 1 1 6212.9 9240 2287 9154 14529 18976 18976 1 ILGLQFK Unmodified 817.50617 0.5061748 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 9 0 1 66.6 66.6 2 0.024108 18266 TMT1-8 92.692 13.096 146.54 126.99 150.61 123.38 110.47 151.42 138 131 152 123 116 145 1 1 1 1 1 1 77767 9241 799 9155 14530 18977 18977 1 ILGPGLNK Unmodified 810.49634 0.49633839 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 0 9 0 1 52.829 52.829 2 0.00145 12907 TMT1-8 144.29 57.951 525.2 976.09 530.72 508.25 700.4 794.44 497 959 568 506 718 764 1 1 1 1 1 1 76329 9242 1457 9156 14531 18978 18978 1 ILGPQGNTIK Unmodified 1039.6026 0.60259438 1610 Q07666;Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 0 8 0 1 49.626 49.626 2 0.00018291 13456 TMT1-7 130.66 77.94 146.11 190.55 168.93 160.99 202.98 209.54 138 191 174 160 208 202 1 1 1 1 1 1 24987 9243 1610 9157 14532 18979 18979 1 ILGQEGDASYLASEISTWDGVIVTPSEK Unmodified 2964.4604 0.46041298 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 5 0 1 88.781 88.781 4 3.7246E-06 29254 TMT1-4 63.803 51.838 23.368 21.469 21.749 14.565 28.375 37.566 22 22 22 15 29 36 1 1 1 1 1 1 6557.7 9244 1654 9158 14533 18980 18980 1 ILGYINTGK Unmodified 977.55458 0.55458155 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 60.247 60.247 2 0.0022053 15835 TMT1-8 109.21 78.644 99.192 192.44 117.55 78.332 111.73 174.83 94 189 123 80 116 167 1 1 1 1 1 1 11065 9245 483 9159 14534 18981 18981 1 ILHCLGLAEEIQK Unmodified 1522.8177 0.81774888 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 7 0 3 61.258 61.258 2;3;4 3.0695E-08 17992 TMT1-6 117.95 85.325 176.34 279.87 241.16 188.82 179.91 234.72 167 278 247 189 188 225 2 2 2 2 2 2 29280 9246 1279 9160 14535;14536;14537 18982;18983;18984 18983 3 ILHLLGQEGPK Unmodified 1203.6976 0.69755739 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 8 0 1 55.806 55.806 3 0.0014522 15959 TMT1-7 82.029 61.127 222.16 320.08 260.68 225.62 253.33 271 210 319 269 225 261 261 2 2 2 2 2 2 27347 9247 3047 9161 14538 18985;18986 18986 2 ILHLPTSWDWR Unmodified 1422.7408 0.74081919 1288 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 0 9 0 1 67.762 67.762 3 0.00027899 18753 TMT1-8 87.568 70.337 30.774 35.771 27.413 37.348 19.448 53.811 29 36 29 36 22 51 1 1 1 1 1 1 13822 9248 1288 9162 14539 18987 18987 1 ILHNDPEVEKK Unmodified 1320.7038 0.70376498 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 1 5 0 1 38.242 38.242 4 0.0035244 9350 TMT1-4 71.555 58.437 200.49 218.23 202.96 276.55 227.62 220.56 189 221 212 268 237 213 1 1 1 1 1 1 10912 9249 2892 9163 14540 18988 18988 1 ILHTYYK Unmodified 936.5069 0.50690308 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 9 0 1 43.003 43.003 3 0.038109 9101 TMT1-8 49.59 6.5633 152.57 228.12 314.19 176.42 201.04 214.93 145 229 311 182 207 207 1 1 1 1 1 1 4374.3 9250 2476 9164 14541 18989 18989 1 ILIANTGMDTDK Unmodified 1290.649 0.64895222 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 6 0 1 58.097 58.097 3 0.0048026 17338 TMT1-5 65.295 49.07 68.832 79.033 86.503 57.063 62.501 83.497 65 80 87 58 65 80 1 1 1 1 1 1 6730.5 9251 1504 9165 14542 18990 18990 1 ILIANTGMDTDKIK Unmodified 1531.828 0.82797922 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 1 8 0 1 58.101 58.101 3 2.2494E-12 16805 TMT1-7 118.33 82.598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9252 1504 9166 14543 18991 18991 1 ILIDSIYK Unmodified 963.56408 0.56408361 1942 Q4KWH8-3;Q4KWH8-4;Q4KWH8-2;Q4KWH8 PLCH1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 yes no 0 0 0 0 0 7.5 0.5 1 1 64.457 64.457 2 0.00045388 19269 TMT1-6 151.27 54.304 306.49 449.23 405.15 272.31 335.05 357.14 290 448 412 277 344 344 2 2 2 2 2 2 57123 9253 1942 9167 14544;14545 18992;18993 18992 2 ILIEDWK Unmodified 915.50657 0.50656873 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 7 0 1 67.135 67.135 2 0.013441 20254 TMT1-6 102.72 50.036 453.36 677.69 594.85 474.54 488.19 622.47 429 675 609 475 508 597 2 2 2 2 2 2 69904 9254 700 9168 14546 18994;18995 18994 2 ILIEDWKK Unmodified 1043.6015 0.60153174 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 1 8 0 1 59.244 59.244 3 0.015898 17257 TMT1-7 74.376 34.318 1026.5 1418.3 1204.8 998.38 922.36 1503.4 970 1417 1238 995 975 1435 1 1 1 1 1 1 67753 9255 700 9169 14547 18996 18996 1 ILIEELR Unmodified 884.53312 0.53311783 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 5 0 1 59.801 59.801 2 0.015963 17792 TMT1-4 100.75 22.577 108.38 122.31 74.726 88.652 105.54 128.11 102 123 80 87 109 123 1 1 1 1 1 1 31471 9256 2884 9170 14548 18997 18997 1 ILIENPK Unmodified 825.496 0.49600404 2374 Q96BW5-2;Q96BW5 PTER Phosphotriesterase-related protein yes no 0 0 0 0 0 7 0 1 51.716 51.716 2 0.0066206 14200 TMT1-6 79.116 20.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9257 2374 9171 14549 18998 18998 1 ILIIGESGVGK Unmodified 1084.6492 0.64921022 2700 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 8 0 1 64.005 64.005 2 8.8563E-09 19096 TMT1-7 163.94 98.688 223.2 210.72 178.87 144.8 160.76 211.81 210 215 184 145 167 203 1 1 1 1 1 1 28887 9258 2700 9172 14550 18999 18999 1 ILIIGGSIANFTNVAATFK Unmodified 1949.0986 0.098598418 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 9 0 1 90.215 90.215 3 3.5861E-10 27511 TMT1-8 90.654 66.273 30.697 51.746 26.795 29.718 20.312 38.862 29 51 29 29 22 37 1 1 1 1 1 1 4275.7 9259 1283 9173 14551 19000 19000 1 ILIPWLLSPESLDIK Unmodified 1736.0124 0.012409172 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 9 0 1 97.157 97.157 3 3.3683E-11 29921 TMT1-8 115.78 83.282 62.756 41.626 57.311 59.065 48.557 60.442 59 44 58 58 51 58 2 2 2 2 2 2 9234.5 9260 2284 9174 14552 19001;19002 19001 2 ILISLATGHR Unmodified 1079.6451 0.64512789 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 53.878 53.878 3 2.1997E-07 13355 TMT1-8 151.22 124.61 53.676 118.54 75.572 80.924 106.96 97.152 51 116 80 80 109 94 1 1 1 1 1 1 17619 9261 555 9175 14553 19003 19003 1 ILISLATGHREEGGENLDQAR Unmodified 2278.1666 0.16657142 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 7 0.816 1 1 1 51.715 51.715 4 4.6178E-31 14771 TMT1-5 143.69 131.21 583.05 785.16 707.78 500.54 665.61 751.72 551 786 721 508 683 723 5 5 5 5 5 5 89950 9262 555 9176 14554;14555;14556 19004;19005;19006;19007;19008 19004 5 ILITIVEEVETLR Unmodified 1526.892 0.89195969 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 2 102.09 102.09 2;3 4.3706E-06 33729 TMT1-5 110.38 94.808 7.4574 29.34 3.1699 15.87 24.933 14.213 7 29 4 15 25 14 1 3 1 1 2 2 4774.5 9263 1833 9177 14557;14558 19009;19010;19011 19010 3 ILITTVPPNLR Unmodified 1235.7602 0.76015765 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 9 0 1 63.686 63.686 2 1.7839E-05 17006 TMT1-8 109.71 47 216.25 236.72 242.91 203.19 223.75 279.3 204 240 247 203 232 268 4 4 4 4 4 4 7248.5 9264 1654 9178 14559 19012;19013;19014;19015 19012 4 ILIVGGGVAGLASAGAAK Unmodified 1523.9035 0.90352742 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 70.3 70.3 3 2.0832E-14 19742 TMT1-8 113.59 90.36 123.22 113.22 113.52 102.75 104.6 136.66 116 116 116 102 109 131 2 2 2 2 2 2 19037 9265 1702 9179 14560 19016;19017 19016 2 ILKEDILNYLEK Unmodified 1489.8392 0.83919583 646 P11182 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 0 0 0 0 1 8 0 1 74.904 74.904 3 0.0060342 23398 TMT1-7 67.964 37.136 138.99 134.94 150.57 114.44 179.19 141.99 131 138 152 116 181 138 1 1 1 1 1 1 10802 9266 646 9180 14561 19018 19018 1 ILLAAAPTSK Unmodified 983.60153 0.60153174 1985 Q5VSL9-2;Q5VSL9;Q5VSL9-3;Q9ULQ0-2;Q9ULQ0 STRIP1;STRIP2 Striatin-interacting protein 1;Striatin-interacting protein 2 yes no 0 0 0 0 0 9 0 1 57.13 57.13 2 0.00037798 14589 TMT1-8 105.52 59.803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9267 1985 9181 14562 19019 19019 1 ILLAELEQLK Unmodified 1168.7067 0.7067251 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 6.2 2.64 1 2 2 82.023 82.023 2;3 5.5348E-14 26041 TMT1-7 181.25 106.95 2628.2 4538.4 3120.3 2751.3 4103.4 4208.7 2488 4481 3261 2758 4182 4058 7 7 7 7 7 7 712130 9268 575 9182 14563;14564;14565;14566;14567 19020;19021;19022;19023;19024;19025;19026;19027 19026 8 ILLAELEQLKGQGK Unmodified 1538.9032 0.90319307 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 8.67 0.471 1 2 74.273 74.273 2;3;4 1.3929E-11 21306 TMT1-8 131.82 95.394 301.9 452.81 273.37 287.37 358.78 468.4 285 449 291 284 371 449 3 3 3 3 3 3 78348 9269 575 9183 14568;14569;14570 19028;19029;19030 19029 3 ILLANFLAQTEALMR Unmodified 1702.944 0.94401203 516;35 P06744;P06744-2;CON__Q3ZBD7 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 0 9 0 2 96.727 96.727 2;3 2.0202E-36 29824 TMT1-8 192.95 156.42 113.64 143.23 75.044 101.3 129.28 150.88 107 143 82 99 133 145 3 3 3 3 3 3 86985 + 9270 516;35 9184 14571;14572 19031;19032;19033 19031 3 ILLDEQAQWK Unmodified 1242.6608 0.66083754 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 64.629 64.629 3 0.0011571 19309 TMT1-6 90.108 56.222 223.51 281.91 247.03 218.94 244.99 309.61 211 283 254 218 254 297 3 3 3 3 3 3 41452 9271 683 9185 14573;14574 19034;19035;19036 19036 3 ILLELLNQMDGFDQNVNVK Unmodified 2202.1355 0.13545421 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 8.5 0.5 1 1 99.914 99.914 3;4 0.0033993 32686 TMT1-7 49.993 36.121 23.245 36.236 29.966 21.994 14.144 31.576 22 36 29 22 15 30 2 2 1 1 1 2 3229.8 9272 1118 9186 14575;14576 19037;19038 19037 2 ILLHSLR Unmodified 850.53887 0.53887191 1996 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 DENND4C DENN domain-containing protein 4C yes no 0 0 0 0 0 9 0 1 42.325 42.325 3 0.024625 8860 TMT1-8 58.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9273 1996 9187 14577 19039 19039 1 ILLITEDLK Unmodified 1056.6431 0.64306221 1626 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 0 7 0 1 73.893 73.893 2 0.0053507 22930 TMT1-6 97.431 22.966 53.7 134.8 57.617 97.744 83.152 97.831 51 131 65 94 87 94 1 1 1 1 1 1 10234 9274 1626 9188 14578 19040 19040 1 ILLLLEEK Unmodified 969.61103 0.6110338 1646 Q12802-4;Q12802;Q12802-2 AKAP13 A-kinase anchor protein 13 yes no 0 0 0 0 0 8 0 1 79.324 79.324 2 0.014324 25088 TMT1-7 94.114 33.153 54.061 73.203 49.289 27.568 63.344 98.396 51 73 51 29 65 94 1 1 1 1 1 1 5209.6 9275 1646 9189 14579 19041 19041 1 ILLNACCPGWVR Unmodified 1457.7272 0.72715974 735 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 0 9 0 1 64.122 64.122 3 0.0025791 17328 TMT1-8 64.55 42.017 54.02 64.454 63.594 58.277 70.565 90.728 51 65 65 58 73 87 1 1 1 1 1 1 9831.8 9276 735 9190 14580 19042 19042 1 ILLNYLPLER Unmodified 1242.7336 0.73360855 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 9 0 1 75.92 75.92 2 0.0020793 21997 TMT1-8 86.882 37.785 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9277 2759 9191 14581 19043 19043 1 ILLPEPSIR Unmodified 1036.6281 0.62808085 881 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 0 0 7 0 1 60.906 60.906 2 0.014732 17809 TMT1-6 82.426 44.78 61.534 72.584 56.133 43.958 41.922 60.632 58 73 58 44 44 58 1 1 1 1 1 1 10991 9278 881 9192 14582 19044 19044 1 ILLQGTPVAQMTEDAVDAER Unmodified 2156.0783 0.078333261 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 5 0 1 75.58 75.58 3 5.5874E-07 24064 TMT1-4 84.551 20.912 23.347 36.519 12.598 29.697 66.419 36.481 22 36 15 29 66 36 1 1 1 1 1 1 9270.4 9279 409 9193 14583 19045 19045 1 ILLSNILDVMDEES Unmodified 1589.7858 0.78583963 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5.5 0.5 1 1 104.45 104.45 2 6.6776E-05 33503 TMT1-4 97.472 86.642 15.964 13.645 10.453 12.339 8.1963 18.954 15 14 11 12 9 18 4 4 4 4 4 4 7231.8 9280 1601 9194 14584;14585 19046;19047;19048;19049 19046 4 ILLSSGR Unmodified 744.44939 0.4493882 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 9 0 1 44.667 44.667 2 6.2721E-08 9711 TMT1-8 180.15 0 176.94 221.09 190.43 168.03 167.49 197.76 167 222 196 167 174 190 1 1 1 1 1 1 19214 9281 1504 9195 14586 19050 19050 1 ILLTEPPMNPTK Unmodified 1352.7374 0.7373733 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 7.67 0.471 1 2 63.289 63.289 2;3 1.3015E-13 18782 TMT1-7 175.15 143.22 349.24 604.65 482.73 356.97 295.19 734.58 331 598 496 358 322 697 3 3 3 3 3 3 126790 9282 1380 9196 14587;14588;14589 19051;19052;19053 19052 3 ILLTEPPMNPTK Oxidation (M) 1368.7323 0.73228792 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 1 0 0 8 0 1 57.208 57.208 3 0.0018618 16434 TMT1-7 80.69 59.318 208.73 145.28 141.97 115.72 138.62 225.23 196 152 145 116 145 215 1 1 1 1 1 1 18351 9283 1380 9196 14590 19054 19054 227 1 ILLTQENPFFR Unmodified 1376.7452 0.74523587 1629 Q08J23;Q08J23-3;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 0 9 0 1 73.483 73.483 2 4.7268E-06 21021 TMT1-8 118.03 75.685 38.151 43.521 43.202 35.973 42.546 53.152 36 44 44 36 44 51 1 1 1 1 1 1 7553.9 9284 1629 9197 14591 19055 19055 1 ILMLGLDAAGK Unmodified 1100.6264 0.62636629 1436 P62330 ARF6 ADP-ribosylation factor 6 yes yes 0 0 0 0 0 9 0 2 73.758 73.758 2;3 0.00064788 21111 TMT1-8 81.338 42.316 75.677 154.38 134.48 116.55 118.1 182.11 72 152 138 116 124 174 2 2 2 2 2 2 14377 9285 1436 9198 14592;14593 19056;19057 19056 2 ILMPELASLR Unmodified 1141.6529 0.65291539 1542 Q00722-3;Q00722-2;Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 yes no 0 0 0 0 0 8 0 1 70.5 70.5 2 0.0073317 21685 TMT1-7 88.136 53.036 37.856 89.109 54.23 67.084 38.734 122.55 36 87 58 65 44 116 1 1 1 1 1 1 5755.1 9286 1542 9199 14594 19058 19058 1 ILMVGLDAAGK Unmodified 1086.6107 0.61071622 1519;1520;774 P84085;P84077;P61204;P61204-2;P18085 ARF5;ARF1;ARF3;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4 no no 0 0 0 0 0 8 0.816 1 1 1 69.162 69.162 2 1.8229E-16 21119 TMT1-7 180.8 130.76 629.35 890.54 772.62 622.15 793.51 1007.1 595 889 792 625 819 966 5 5 5 5 5 5 111390 9287 1520;1519;774 9200 14595;14596;14597 19059;19060;19061;19062;19063 19060 5 ILNDDTALK Unmodified 1001.5393 0.53932542 1302 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 0 0 5 0 1 53.808 53.808 2 0.00034251 15475 TMT1-4 140.45 69.527 169.09 343.88 324 259.76 155.63 389.98 161 339 330 258 173 370 1 1 1 1 1 1 57574 9288 1302 9201 14598 19064 19064 1 ILNDDTALKEYK Unmodified 1421.7402 0.74021007 1302 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 0 1 6 0 1 54.511 54.511 3 0.0035543 15896 TMT1-5 73.91 29.919 194.07 268.36 157.84 178.14 140.33 305.14 183 267 169 174 152 290 1 1 1 1 1 1 16325 9289 1302 9202 14599 19065 19065 1 ILNDVQDR Unmodified 971.50361 0.50360861 1738;40 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 3.5 0.5 1 1 44.002 44.002 2 0.00095217 11876 TMT1-3 93.598 44.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9290 40;1738 9203 14600;14601 19066;19067 19067 2 ILNFLMHPK Unmodified 1111.6212 0.62122133 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 0 9 0 1 67.441 67.441 3 0.0052115 18653 TMT1-8 67.563 39.164 53.686 94.826 93.921 41.009 78.945 83.027 51 94 94 44 80 80 1 1 1 1 1 1 9044.6 9291 1028 9204 14602 19068 19068 1 ILNIFGVIK Unmodified 1015.643 0.64300263 450 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 0 9 0 1 81.563 81.563 2 0.041363 24214 TMT1-8 65.246 29.891 30.687 44.165 34.828 29.621 0 46.904 29 44 36 29 0 44 1 1 1 1 0 1 2915.2 9292 450 9205 14603 19069 19069 1 ILNNGHAFNVEFDDSQDK Unmodified 2061.9392 0.93919724 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 59.405 59.405 3 7.717E-05 17187 TMT1-4 75.239 65.451 153.52 250.21 134.18 155.41 145.1 227.18 145 247 145 152 153 217 2 2 2 2 2 2 30978 9293 406 9206 14604;14605 19070;19071 19071 2 ILNNSGLPITSAIDLEDAAK Unmodified 2054.0895 0.089549874 2419 Q96I99 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0 1 77.548 77.548 3 1.4776E-17 24997 TMT1-5 118.19 100.49 23.138 52.128 34.423 28.839 42.874 53.143 22 51 36 29 44 51 1 1 1 1 1 1 8319.6 9294 2419 9207 14606 19072 19072 1 ILNPEEIEK Unmodified 1083.5812 0.58119023 108 O14818;O14818-2 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 0 4.5 0.5 1 1 57.537 57.537 2 5.3412E-12 16838 TMT1-4 150.08 94.065 225.74 359.87 348.06 274.66 275.04 304.49 214 358 354 275 285 293 1 1 1 1 1 1 119600 9295 108 9208 14607;14608 19073;19074 19074 2 ILPGPHFEER Unmodified 1193.6193 0.61930707 2365 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 0 5 0 1 45.964 45.964 3 0.0019693 12415 TMT1-4 84.054 58.317 123.31 113.45 99.05 87.216 104.8 151.58 116 116 102 87 109 145 1 1 1 1 1 1 8186.8 9296 2365 9209 14609 19075 19075 1 ILPPNELK Unmodified 922.54877 0.54876789 3091 yes yes 0 0 0 0 0 8 0 1 39.678 39.678 3 0.039687 9510 TMT1-7 50.878 0.83777 190.04 340.99 412.43 340.84 852.41 642.99 181 339 415 349 851 626 1 1 1 1 1 1 21907 + 9297 3091 9210 14610 19076 19076 1 ILPSVPK Unmodified 752.47963 0.47962569 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 9 0 1 54.363 54.363 2 0.011594 13449 TMT1-8 116.11 46.881 446.4 507.96 465.03 339.16 368.44 574.72 421 513 474 342 386 549 3 3 3 3 3 3 30041 9298 855 9211 14611 19077;19078;19079 19077 3 ILPTLEAVAALGNK Unmodified 1408.829 0.8289655 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 9 0 1 82.979 82.979 3 2.2443E-12 24776 TMT1-8 123.95 99.094 269.94 425.44 257.48 320.19 291.32 378.65 255 421 276 312 305 363 3 3 3 3 3 3 36551 9299 1654 9212 14612 19080;19081;19082 19082 3 ILPVFDEPPNPTNVEESLKR Unmodified 2293.1954 0.19541193 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 6 0 1 70.699 70.699 3 1.7717E-35 22375 TMT1-5 157.84 133.8 68.714 86.259 100.25 103 75.545 99.114 65 87 102 101 80 95 2 2 2 2 2 2 31015 9300 2788 9213 14613 19083;19084 19084 2 ILQAGFK Unmodified 775.45922 0.4592246 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 9 0 1 54.785 54.785 2 0.035379 13673 TMT1-8 86.512 49.491 242.12 509.95 533.32 332.64 614.93 502.66 231 503 536 344 619 488 1 1 1 1 1 1 51261 9301 1868 9214 14614 19085 19085 1 ILQAVNFPFLVK Unmodified 1387.8228 0.82275791 760 P17612;P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes no 0 0 0 0 0 9 0 1 84.96 84.96 3 2.3152E-07 25533 TMT1-8 112.15 69.404 115.5 136.9 128.46 100.75 163.86 149.89 109 138 131 102 166 145 2 2 2 2 2 2 30113 9302 760 9215 14615 19086;19087 19087 2 ILQAVNFPFLVR Unmodified 1415.8289 0.82890592 850 P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-8 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 0 0 0 0 0 9 0 2 83.27 83.27 2;3 1.4602E-13 24815 TMT1-8 169.44 128.71 77.73 40.465 66.357 50.188 85.082 105.24 73 44 66 51 87 101 2 2 2 2 2 2 39762 9303 850 9216 14616;14617 19088;19089 19088 2 ILQEGVDPK Unmodified 997.54441 0.5444108 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 4.5 0.5 1 1 50.244 50.244 2;3 0.00040127 14361 TMT1-3 78.655 51.326 177.19 189.41 175 192.74 181.33 218.69 167 192 181 189 189 210 1 1 1 1 1 1 36918 9304 1076 9217 14618;14619 19090;19091 19090 2 ILQEHEQIK Unmodified 1136.619 0.61897272 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 5 0 1 40.798 40.798 3 0.00027811 10340 TMT1-4 119.53 92.047 176.47 321.22 185.53 143.21 224.26 222.79 167 316 196 145 228 215 1 1 1 1 1 1 22408 9305 1754 9218 14620 19092 19092 1 ILQEYITQEGHK Unmodified 1457.7514 0.75144346 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 0 7 0 1 54.105 54.105 3 0.017732 15161 TMT1-6 52.821 27.436 153.27 274.32 157.31 138.17 175.1 229.52 145 270 167 138 181 220 1 1 1 1 1 1 9113.6 9306 2569 9219 14621 19093 19093 1 ILQGAPEILDR Unmodified 1223.6874 0.68738664 2103 Q86TP1;Q86TP1-2 PRUNE Protein prune homolog yes no 0 0 0 0 0 5 0 1 61.852 61.852 3 0.00086105 18645 TMT1-4 88.155 63.812 61.806 33.406 43.684 36.102 34.164 53.391 58 36 44 36 36 51 1 1 1 1 1 1 5980.5 9307 2103 9220 14622 19094 19094 1 ILQGGAK Unmodified 685.41227 0.41227441 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 7.5 0.5 1 1 41.307 41.307 2 0.0090369 9994 TMT1-7 114.02 18.066 1133.1 1136.2 1740.8 1234.1 1217.3 1767.9 1071 1167 1728 1245 1276 1691 3 3 3 3 3 3 378800 9308 906 9221 14623;14624 19095;19096;19097 19096 3 ILQHSHGIEEER Unmodified 1446.7215 0.72154031 2337 Q92974-3;Q92974-2;Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 0 3 0 1 30.767 30.767 4 0.011299 7621 TMT1-2 54.023 33.323 38.31 20.218 36.267 28.714 43.686 29.667 36 22 36 29 44 29 1 1 1 1 1 1 4323.7 9309 2337 9222 14625 19098 19098 1 ILQHVQR Unmodified 892.52428 0.52428448 1246 P51606 RENBP N-acylglucosamine 2-epimerase yes yes 0 0 0 0 0 7.5 0.5 1 1 31.398 31.398 3 0.00078984 6230 TMT1-7 137.83 42.479 77.144 117.62 99.395 79.08 129.53 112.5 73 117 102 80 131 109 2 2 2 2 2 2 10567 9310 1246 9223 14626;14627 19099;19100 19100 2 ILQIAESYLIVSDK Unmodified 1590.8869 0.88687431 2536 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 0 8 0 1 87.797 87.797 3 1.9638E-05 28278 TMT1-7 93.823 68.105 30.734 44.295 26.858 38.322 27.539 30.128 29 44 29 37 29 29 1 1 1 1 1 1 3518.6 9311 2536 9224 14628 19101 19101 1 ILQIITELIK Unmodified 1182.7588 0.75876067 2094 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 yes yes 0 0 0 0 0 9 0 1 99.028 99.028 2 0.0047359 30642 TMT1-8 92.538 49.718 39.232 52.103 34.689 45.361 35.298 38.435 37 52 37 44 37 37 2 2 2 2 2 2 2092 9312 2094 9225 14629 19102;19103 19102 2 ILQISPEGPLQGR Unmodified 1406.7882 0.78816332 2375 Q96BY6;Q96BY6-3;Q96BY6-2 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 7 0 1 61.983 61.983 3 0.0090736 18267 TMT1-6 57.106 36.329 23.16 36 44.407 20.743 34.87 53.371 22 36 44 22 36 51 1 1 1 1 1 1 6786 9313 2375 9226 14630 19104 19104 1 ILQLCMGNHELYMR Unmodified 1776.8474 0.84735123 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 9 0 1 46.633 46.633 4 0.046608 10486 TMT1-8 29.491 13.354 99.76 115.23 87.536 151.65 85.877 159.58 94 116 94 145 94 152 1 1 1 1 1 1 6834.7 9314 720 9227 14631 19105 19105 1 ILSCGEVIHVK Unmodified 1253.6802 0.68019277 2633 Q9H2U2;Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 7 0 1 51.698 51.698 3 0.0049308 14241 TMT1-6 68.44 56.827 99.03 191.99 145.2 162.62 191.62 172.55 94 189 152 160 196 167 1 1 1 1 1 1 18158 9315 2633 9228 14632 19106 19106 1 ILSEEGR Unmodified 802.41848 0.418482 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 0 3 0 1 37.498 37.498 2 0.011916 10322 TMT1-2 103.91 43.259 68.809 117.82 57.48 121.97 73.903 121.55 65 116 65 116 80 116 1 1 1 1 1 1 8419.3 9316 1691 9229 14633 19107 19107 1 ILSFVYPIR Unmodified 1106.6488 0.64881629 2025 Q6P1M0 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 0 0 0 0 0 9 0 1 74.364 74.364 2 0.019052 21369 TMT1-8 77.072 10.985 77.489 93.759 61.72 58.235 78.702 67.044 73 94 65 58 80 65 1 1 1 1 1 1 9837 9317 2025 9230 14634 19108 19108 1 ILSGPFVQK Unmodified 987.57532 0.57531699 842 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 0 9 0 1 60.962 60.962 2 0.017827 16098 TMT1-8 79.906 16.427 46.164 119.05 75.212 89.175 76.217 98.029 44 116 80 87 80 94 1 1 1 1 1 1 5058 9318 842 9231 14635 19109 19109 1 ILSGVIR Unmodified 756.48577 0.48577371 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 9 0 1 53.196 53.196 2 0.015392 13020 TMT1-8 97.473 34.494 184.1 255.22 220.6 196.9 222.19 211.12 174 255 227 196 228 204 1 1 1 1 1 1 62171 9319 1878 9232 14636 19110 19110 1 ILSGVVTK Unmodified 815.51165 0.5116541 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 0 9 0 1 55.241 55.241 2 0.001835 13804 TMT1-8 136.8 35.154 398.71 572.45 491.11 376.64 617.43 553.76 377 571 503 382 625 536 2 2 2 2 2 2 61245 9320 1428 9233 14637 19111;19112 19111 2 ILSISADIETIGEILK Unmodified 1713.9764 0.9764176 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 6 1 1 1 71.476 71.476 3;4 5.2887E-16 31815 TMT1-6 135.02 109.7 307.47 351.57 324.21 204.74 290.73 550.29 290 355 329 210 305 524 4 4 4 4 4 4 25448 9321 1409;1410 9234 14638;14639 19113;19114;19115;19116 19115 4 ILSISADIETIGEILKK Unmodified 1842.0714 0.071380614 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 1 8.33 0.471 2 1 91.144 91.144 3;4 1.3398E-30 29539 TMT1-7 178.03 149.48 472.34 732.46 424.26 487.53 512.5 628.17 446 725 455 478 532 603 6 6 6 6 6 6 91279 9322 1409;1410 9235 14640;14641;14642 19117;19118;19119;19120;19121;19122 19118 6 ILSLCPEIK Unmodified 1071.5998 0.59981719 329 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 0 8 0 1 65.135 65.135 2 0.00099457 19535 TMT1-7 125.82 72.324 84.769 132.54 67.699 65.266 92.744 75.172 80 131 73 65 94 73 1 1 1 1 1 1 17052 9323 329 9236 14643 19123 19123 1 ILSNNPSK Unmodified 871.47633 0.47633123 1160 P48637 GSS Glutathione synthetase yes yes 0 0 0 0 0 8 0 1 41.294 41.294 2 0.026065 10154 TMT1-7 84.615 25.633 108.34 90.904 108.06 87.098 82.579 128.76 102 94 109 87 87 123 1 1 1 1 1 1 10466 9324 1160 9237 14644 19124 19124 1 ILSNQEEWFK Unmodified 1292.6401 0.6401021 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 7 0 1 65.895 65.895 2 0.0029452 19798 TMT1-6 97.734 48.366 68.656 86.1 110 54.528 122.83 96.699 65 87 109 58 123 94 1 1 1 1 1 1 12970 9325 300 9238 14645 19125 19125 1 ILSSCCK Unmodified 866.39901 0.39900889 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 8 0 1 42.16 42.16 2 0.0053079 10492 TMT1-7 134.66 50.862 314.6 293.87 437.21 271.23 233.14 432.54 297 303 433 276 249 412 1 1 1 1 1 1 31612 9326 1878 9239 14646 19126 19126 1 ILTDKLK Unmodified 829.5273 0.52730417 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 9 0 1 50.141 50.141 3 0.041406 11828 TMT1-8 53.166 0 997.84 1056.8 736.59 558.37 405.44 1701.5 939 1068 767 558 468 1607 1 1 1 1 1 1 38550 9327 519;520;521;518 9240 14647 19127 19127 1 ILTDYGFEGHPFR Unmodified 1550.7518 0.75177781 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 59.88 59.88 3 5.0476E-11 17438 TMT1-6 135.94 118.43 84.35 177.78 99.808 157.99 117.01 127.78 80 174 109 152 123 123 2 2 2 2 2 2 26969 9328 281 9241 14648;14649 19128;19129 19129 2 ILTEAEIDAHLVALAERD Unmodified 1978.0371 0.037120373 1361 P60900;P60900-2;P60900-3 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 1 4 0 1 73.727 73.727 3 2.1483E-14 23660 TMT1-3 126.07 100.21 99.574 123.35 111.95 127.04 96.744 160.34 94 124 116 124 101 153 3 3 3 3 2 3 17759 9329 1361 9242 14650 19130;19131;19132 19131 3 ILTFDQLALDSPK Unmodified 1459.7922 0.79224564 1607 Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 0 7.33 0.471 2 1 75.435 75.435 2;3 1.2147E-36 23513 TMT1-6 210.95 161.97 168.35 263.75 155.76 185.52 219.1 225.07 159 261 167 182 225 217 3 3 3 3 3 3 92618 9330 1607 9243 14651;14652;14653 19133;19134;19135 19133 3 ILTGGADKNVVVFDK Unmodified 1574.8668 0.86680757 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 1 8 0 2 60.244 60.244 3;4 0.00011729 17621 TMT1-7 80.534 61.459 176.43 301.7 208.06 198.18 193.87 272.69 167 298 218 196 203 261 2 2 2 2 2 2 17170 9331 2918 9244 14654;14655 19136;19137 19136 2 ILTIEVK Unmodified 814.51641 0.51640513 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 0 7.5 0.5 1 1 60.963 60.963 2 0.037495 17831 TMT1-6 87.323 16.294 222.49 300.46 223.52 187.61 242.18 433.35 210 300 232 188 254 413 2 2 2 2 2 2 16410 9332 886 9245 14656;14657 19138;19139 19138 2 ILTIYPQVLHSLMEAR Unmodified 1883.0339 0.033889671 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 79.861 79.861 3 0.0018982 23524 TMT1-8 55.546 39.168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9333 1999 9246 14658 19140 19140 1 ILTLSQIGR Unmodified 999.60768 0.60767976 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 9 0 1 59.996 59.996 2 0.0023586 15719 TMT1-8 108.81 61.995 130.16 190.96 144.72 171.31 138.08 166.62 123 190 152 167 145 160 1 1 1 1 1 1 11009 9334 1886 9247 14659 19141 19141 1 ILTNWGHPEYTCIYR Unmodified 1921.9145 0.91450282 2859 Q9UH99-2;Q9UH99 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 8 0 1 59.479 59.479 3 3.8932E-05 17327 TMT1-7 88.311 75.928 68.473 116.89 114.66 78.327 121.19 112.74 65 116 116 80 123 109 1 1 1 1 1 1 21412 9335 2859 9248 14660 19142 19142 1 ILTPLVSLDTPGK Unmodified 1352.7915 0.79151736 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 8.5 0.5 1 1 73.082 73.082 3 6.3643E-09 22667 TMT1-7 127.17 103.42 291.87 338.94 251.55 203.08 260.33 341.15 275 341 261 204 269 327 3 3 3 3 3 3 54535 9336 2688 9249 14661;14662 19143;19144;19145 19143 3 ILTSDVFQDCNK Unmodified 1438.6762 0.67622961 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 62.102 62.102 3 2.6991E-05 18899 TMT1-5 103.76 79.202 168.15 357.27 290.46 193.38 188.03 327.23 160 351 297 196 199 312 1 1 1 1 1 1 67153 9337 471 9250 14663 19146 19146 1 ILTTASSHEFEHTK Unmodified 1599.7893 0.78928553 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6 0 1 40.9 40.9 4 5.1408E-17 10560 TMT1-5 144.27 117.55 169.66 170.44 194.61 143.19 196.69 203.32 160 174 196 145 201 196 1 1 1 1 1 1 15088 9338 1910 9251 14664 19147 19147 1 ILTTASSHEFEHTKK Unmodified 1727.8842 0.88424855 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 1 7 0 1 39.878 39.878 5 4.5959E-06 9528 TMT1-6 96.673 72.63 284.33 462.59 331.79 300.71 335.9 385.9 269 458 346 299 347 371 1 1 1 1 1 1 14320 9339 1910 9252 14665 19148 19148 1 ILTTGFSR Unmodified 893.49707 0.49706667 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 9 0 1 51.193 51.193 2 3.5758E-21 12198 TMT1-8 203.07 115.78 791.82 1383.3 1001.1 908.62 1110.1 1394.6 750 1366 1043 905 1147 1338 2 2 2 2 2 2 375100 9340 971 9253 14666 19149;19150 19149 2 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR Unmodified 3751.9057 0.90571885 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 5 0 2 73.006 73.006 4;5 1.9138E-30 22953 TMT1-4 110.44 104.86 69.912 78.978 85.398 81.824 27.966 75.954 66 80 87 80 29 72 3 3 3 3 1 3 28370 9341 937 9254 14667;14668 19151;19152;19153 19151 3 ILVAHDIHTK Unmodified 1145.6557 0.65569258 2374 Q96BW5-2;Q96BW5 PTER Phosphotriesterase-related protein yes no 0 0 0 0 0 7 0 1 39.554 39.554 4 2.9039E-05 9387 TMT1-6 129.85 92.66 53.566 110.68 100.67 62.58 131.09 89.001 51 109 102 65 131 87 1 1 1 1 1 1 5108.1 9342 2374 9255 14669 19154 19154 1 ILVALCGGN Unmodified 915.48479 0.48478743 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 8.5 0.5 1 1 72.228 72.228 2 0.0017139 20488 TMT1-8 117.7 106.33 262.01 311.29 244.04 266.55 280.2 317.13 247 313 255 262 290 305 4 4 4 4 4 4 119130 9343 461 9256 14670;14671 19155;19156;19157;19158 19157 4 ILVATNLFGR Unmodified 1102.6499 0.64987892 1738;40 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 9 0 1 69.416 69.416 2 0.0033574 19513 TMT1-8 96.143 50.831 84.557 139.5 97.342 94.853 110.97 174.86 80 138 102 94 116 167 1 1 1 1 1 1 74670 9344 40;1738 9257 14672 19159 19159 1 ILVAVVK Unmodified 740.51601 0.5160112 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 0 9 0 1 60.32 60.32 2 0.013299 15848 TMT1-8 109.88 109.88 244.24 355.05 307.34 246 300.62 359.19 231 354 315 247 310 345 1 1 1 1 1 1 18540 9345 55 9258 14673 19160 19160 1 ILVDVEK Unmodified 814.48002 0.48001963 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 6 0 1 56.481 56.481 2 0.011901 16773 TMT1-5 103.92 10.994 115.19 184.59 140.78 100.04 162.56 219.22 109 183 145 102 167 210 1 1 1 1 1 1 21170 9346 648 9259 14674 19161 19161 1 ILVGTNLVR Unmodified 983.61277 0.61276513 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 56.213 56.213 2 0.0050293 14321 TMT1-8 101.72 56.386 215.33 252.33 203.93 182.8 211.34 241.28 203 254 211 182 218 232 2 2 2 2 2 2 13418 9347 2444 9260 14675 19162;19163 19163 2 ILVLDDTNHER Unmodified 1323.6783 0.67827852 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 0 4 0 1 46.987 46.987 3 4.2882E-07 13037 TMT1-3 133.42 108.08 61.281 86.991 86.398 49.554 55.261 91.165 58 87 87 51 58 87 1 1 1 1 1 1 21365 9348 599 9261 14676 19164 19164 1 ILVNILPYFAYEGTR Unmodified 1767.956 0.95595693 1692 Q13315 ATM Serine-protein kinase ATM yes yes 0 0 0 0 0 9 0 1 88.506 88.506 3 0.0038611 26865 TMT1-8 54.7 40.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9349 1692 9262 14677 19165 19165 1 ILVSCNNQQDLQEWVEHLQK Unmodified 2480.2118 0.21180705 1755 Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155 ARHGEF7 Rho guanine nucleotide exchange factor 7 yes no 0 0 0 0 0 7 0 1 71.898 71.898 4 0.017146 22202 TMT1-6 38.453 25.776 46.429 80.937 62.97 50.952 55.197 91.167 44 80 65 51 58 87 1 1 1 1 1 1 7296.4 9350 1755 9263 14678 19166 19166 1 ILVTGGSGLVGK Unmodified 1099.6601 0.66010926 1732 Q13630 TSTA3 GDP-L-fucose synthase yes yes 0 0 0 0 0 9 0 1 59.535 59.535 3 0.00058365 15505 TMT1-8 77.64 45.632 53.968 95.611 45.799 75.742 70.019 83.282 51 94 51 73 73 80 1 1 1 1 1 1 8957.1 9351 1732 9264 14679 19167 19167 1 ILVTLLHTLER Unmodified 1306.7973 0.79727144 2559 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 0 9 0 1 79.092 79.092 3 1.6044E-05 23202 TMT1-8 106.38 77.683 37.964 65.664 56.016 58.571 78.943 59.575 36 65 58 58 80 58 1 1 1 1 1 1 13453 9352 2559 9265 14680 19168 19168 1 ILVVIEPLLIDEDYYAR Unmodified 2033.1085 0.1084944 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 6 0 1 95.232 95.232 3 0.0014829 31438 TMT1-5 61.265 41.525 23.405 14.017 21.836 22.641 5.4819 23.296 22 15 22 22 7 22 1 1 1 1 1 1 2487.9 9353 286 9266 14681 19169 19169 1 ILVVITDGEK Unmodified 1085.6332 0.6332258 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6.5 0.5 1 1 66.753 66.753 2 0.00083413 20131 TMT1-6 105.4 66.248 68.408 140.45 105.62 79.576 83.438 113.81 65 138 109 80 87 109 1 1 1 1 1 1 10498 9354 647 9267 14682;14683 19170;19171 19171 2 ILYDILAFAK Unmodified 1165.6747 0.67469669 2144 Q8IXB1;Q8IXB1-2 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 0 0 9 0 1 94.089 94.089 3 0.0059798 28933 TMT1-8 63.816 44.03 23.359 13.887 29.8 14.075 28.91 22.627 22 15 29 15 29 22 1 1 1 1 1 1 2461.3 9355 2144 9268 14684 19172 19172 1 ILYEGTHLDPER Unmodified 1441.7201 0.72014333 1968 Q5RI15;Q5RI15-2 COX20 Cytochrome c oxidase protein 20 homolog yes no 0 0 0 0 0 4 0 1 47.931 47.931 3 1.3041E-08 13459 TMT1-3 111.12 83.641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9356 1968 9269 14685 19173 19173 1 ILYLDSSEICFPTVPGCPGAWDVDSENPQR Unmodified 3421.5595 0.55949187 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6 0 1 87.55 87.55 4 0.00025818 28915 TMT1-5 46.296 40.516 23.372 21.48 21.059 30.05 20.847 22.857 22 22 22 29 22 22 1 1 1 1 1 1 5300 9357 2525 9270 14686 19174 19174 1 ILYLTPEQEKDK Unmodified 1475.7872 0.78716026 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 1 6.5 0.5 1 1 54.238 54.238 3 7.6455E-05 15270 TMT1-6 102.66 70.386 246.16 264.51 241.79 187.52 246.95 294.63 232 268 247 189 254 283 2 2 2 2 2 2 21470 9358 1439 9271 14687;14688 19175;19176 19176 2 ILYSFATAFR Unmodified 1187.6339 0.63389451 3004 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 76.546 76.546 2 0.021895 22226 TMT1-8 69.915 30.293 54.109 64.702 48.41 58.753 93.337 66.627 51 65 51 58 94 65 1 1 1 1 1 1 8805.4 9359 3004 9272 14689 19177 19177 1 ILYSQCGDVMR Unmodified 1340.6217 0.62169161 1356 P60660-2;P60660;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 0 0 0 6.5 1.12 1 1 1 1 51.499 51.499 2 3.0934E-42 14652 TMT1-5 225.87 178.04 901.19 1243.8 951.23 769.79 920.46 1407.5 851 1241 984 772 960 1345 4 4 4 4 4 4 316580 9360 1356 9273 14690;14691;14692;14693 19178;19179;19180;19181;19182 19179 5 ILYSQCGDVMR Oxidation (M) 1356.6166 0.61660624 1356 P60660-2;P60660;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 1 0 0 6 0 1 44.777 44.777 2 0.044428 12079 TMT1-5 90.142 75.463 100.08 92.376 53.346 75.49 59.528 145.41 94 94 58 73 65 138 1 1 1 1 1 1 26131 9361 1356 9273 14694 19183 19183 212 1 ILYSWGELLGK Unmodified 1277.702 0.70197407 1966 Q5R372-4;Q5R372;Q5R372-3;Q5R372-2 RABGAP1L Rab GTPase-activating protein 1-like yes no 0 0 0 0 0 9 0 1 83.969 83.969 2 0.00017835 25160 TMT1-8 103.7 51.973 15.832 37.021 12.91 22.873 21.433 15.378 15 36 15 22 22 15 1 1 1 1 1 1 2949.9 9362 1966 9274 14695 19184 19184 1 IMADSGPIYDK Unmodified 1208.5747 0.57472465 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5 0 1 55.261 55.261 2 2.0712E-08 16074 TMT1-4 159.4 109.99 555.34 836.15 633.13 580.4 549.94 1119.6 525 831 658 575 588 1065 1 1 1 1 1 1 118400 + 9363 32;554 9275 14696 19185 19185 1 IMATPEQVGK Unmodified 1072.5587 0.55868065 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 6 0 1 48.993 48.993 3 1.669E-05 13749 TMT1-5 99.815 60.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9364 675 9276 14697 19186 19186 1 IMDATNILVSPLVYLYPDIPK Unmodified 2374.2858 0.28580684 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 9 0 1 99.433 99.433 3 0.0022253 30830 TMT1-8 46.415 29.134 15.974 6.1183 15.11 15.085 21.791 15.368 15 7 15 15 22 15 1 1 1 1 1 1 1037.2 9365 1073 9277 14698 19187 19187 1 IMDPNIVGSEHYDVAR Unmodified 1814.8621 0.8621329 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 5 0.816 1 1 1 53.268 53.268 3 5.4015E-20 15597 TMT1-3 157.7 129.42 376.22 518.89 348.93 242.7 344.08 468.82 355 517 363 247 355 449 4 4 4 4 4 4 145020 9366 508 9278 14699;14700;14701 19188;19189;19190;19191 19188 4 IMEGPAFNFLDAPAVR Unmodified 1746.8763 0.8763264 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 7 0 1 77.872 77.872 3 1.9814E-05 24441 TMT1-6 85.469 70.082 68.775 102.62 76.118 88.407 114.17 90.55 65 102 80 87 116 88 2 2 2 2 2 2 10741 9367 645 9279 14702 19192;19193 19192 2 IMEVIDAITTTAQSHQR Unmodified 1912.9677 0.9676606 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 9 0 1 76.134 76.134 3 1.8117E-08 22076 TMT1-8 87.157 11.106 54.128 49.645 57.947 34.971 49.115 76.416 51 51 58 36 51 73 1 1 1 1 1 1 11892 9368 765 9280 14703 19194 19194 1 IMGIPEEEQMGLLR Oxidation (M) 1630.8059 0.80586357 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 4.5 0.5 1 1 63.811 63.811 3 4.0578E-05 19433 TMT1-4 96.371 84.452 146.28 212.61 121.26 132.52 182.76 227.17 138 211 130 131 188 218 2 2 2 2 2 2 63609 9369 1019 9281 14704;14705 19195;19196 19196 183 2 IMGIPEEEQMGLLR Unmodified 1614.8109 0.81094895 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 5.4 1.02 1 2 1 1 69.936 69.936 2;3 7.8406E-19 21748 TMT1-4 159.5 144.4 339.74 349.59 312.27 229.09 370.64 383.84 320 355 319 233 377 370 4 4 4 4 4 4 293510 9370 1019 9281 14706;14707;14708;14709;14710 19197;19198;19199;19200;19201;19202 19198 6 IMISDFGLSK Oxidation (M) 1125.574 0.57399637 1746 Q14012;Q8IU85-2;Q8IU85 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D yes no 0 0 1 0 0 8 0 1 66.989 66.989 3 0.0065016 20298 TMT1-7 50.284 29.331 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9371 1746 9282 14711 19203 19203 266 1 IMISDFGLSK Unmodified 1109.5791 0.57908174 1746 Q14012;Q8IU85-2;Q8IU85 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D yes no 0 0 0 0 0 9 0 1 70.16 70.16 2 0.034874 19806 TMT1-8 65.5 28.309 54.12 42.07 65.631 42.687 79.417 67.024 51 44 65 44 80 65 1 1 1 1 1 1 14106 9372 1746 9282 14712 19204 19204 1 IMKDILEK Unmodified 988.5627 0.5627034 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 8 0 1 58.514 58.514 3 0.022805 16945 TMT1-7 70.17 11.192 427.7 647.14 425.19 319.43 381.61 735.31 404 642 444 322 403 700 1 1 1 1 1 1 45507 9373 545 9283 14713 19205 19205 1 IMLPWDPTGK Unmodified 1156.5951 0.59506616 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 9 0 2 74.652 74.652 2;3 0.014718 21459 TMT1-8 72.607 40.287 123.67 206.38 139.76 116.93 139.52 197.49 117 204 146 117 145 189 3 3 3 3 3 3 20575 9374 861 9284 14714;14715 19206;19207;19208 19208 3 IMNSFSVMPSPK Oxidation (M) 1352.6468 0.64684373 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 9 0 1 58.169 58.169 3 0.0011022 15022 TMT1-8 79.633 39.716 123.04 160.21 103.5 94.368 117.23 206.66 116 160 109 94 123 197 1 1 1 1 1 1 17864 9375 2650 9285 14716 19209 19209 308 1 IMNSFSVMPSPK Unmodified 1336.6519 0.65192911 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 9 0 2 65.195 65.195 2;3 2.8108E-13 17737 TMT1-8 166.14 100.09 320.23 529.71 372.91 303.18 306.87 588.2 303 524 388 303 326 560 2 2 2 2 2 2 122490 9376 2650 9285 14717;14718 19210;19211 19210 2 IMNTFSVVPSPK Unmodified 1318.6955 0.69550848 537;1493;1713 P07437;P68371;P04350;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 0 0 0 0 0 6 3.56 1 1 1 65.527 65.527 3 4.0156E-06 16508 TMT 1-phospho 92.925 59.992 1586.6 2311.4 1532.3 1390.9 1677.2 2542.5 1498 2297 1609 1385 1748 2430 4 4 4 4 4 4 391880 9377 537;1493;1713 9286 14719;14720;14721 19212;19213;19214;19215;19216 19212 5 IMNTFSVVPSPK Oxidation (M) 1334.6904 0.69042311 537;1493;1713 P07437;P68371;P04350;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 0 0 1 0 0 9 0 1 58.659 58.659 3 0.00096081 15282 TMT1-8 81.431 54.89 409.03 598.45 358.25 408.2 522.66 529.81 386 594 383 402 535 511 2 2 2 2 2 2 25109 9378 537;1493;1713 9286 14722 19217;19218 19218 91 2 IMNVIGEPIDER Unmodified 1384.7021 0.70205043 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 4 0.894 2 1 2 63.043 63.043 2;3 4.7428E-08 19347 TMT1-3 130.01 111.23 354.51 473.07 249.4 257.94 314.34 431.29 334 471 269 255 326 413 6 6 6 6 6 6 178700 9379 508 9287 14723;14724;14725;14726;14727 19219;19220;19221;19222;19223;19224 19221 6 IMSIVDPNR Unmodified 1043.5434 0.54336494 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 6 1 1 1 57.7 57.7 2 4.2288E-14 16588 TMT1-6 190.26 156.75 1169.7 1507.5 1401.7 935.08 1339.7 1375.3 1105 1513 1423 955 1367 1326 2 2 2 2 2 2 218230 9380 672 9288 14728;14729 19225;19226;19227 19227 3 IMSSPLSK Unmodified 861.46299 0.46298935 1387 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 0 9 0 1 51.836 51.836 2 0.008775 12519 TMT1-8 93.162 40.377 107.89 199.72 92.889 111.08 134.07 150.74 102 196 102 109 138 145 1 1 1 1 1 1 12530 9381 1387 9289 14730 19228 19228 1 IMVANIEEVLQR Unmodified 1413.765 0.76498503 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 6 0 1 73.789 73.789 2 0.00077737 23483 TMT1-5 95.094 67.352 54.163 42.187 58.415 34.504 72.464 67.222 51 44 58 36 73 65 1 1 1 1 1 1 8773 9382 272 9290 14731 19229 19229 1 IMYHASK Unmodified 848.42146 0.42145889 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 8 0 1 35.405 35.405 3 0.0086355 7835 TMT1-7 48.787 17.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9383 1083 9291 14732 19230 19230 1 IMYLSEAYFR Unmodified 1291.6271 0.62709457 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 8 0 1 70.642 70.642 2 0.0041744 21740 TMT1-7 64.841 40.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9384 3063 9292 14733 19231 19231 1 IMYSHLVDYFPEYDGPQR Unmodified 2229.0201 0.0200901 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 6 0 2 67.847 67.847 3;4 9.3427E-11 21197 TMT1-5 89.311 77.461 38.049 65.901 41.478 44.541 57.36 36.739 36 65 44 44 58 36 1 1 1 1 1 1 7439.5 9385 1211 9293 14734;14735 19232;19233 19233 2 INAANYASVK Unmodified 1049.5506 0.55055881 2421 Q96IU4;Q96IU4-2 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 0 0 0 0 0 7 0 1 47.463 47.463 2 1.7832E-14 12490 TMT1-6 188.87 113.02 154.27 118.45 120.7 101.01 174.57 142.13 145 123 123 102 176 138 1 1 1 1 1 1 25382 9386 2421 9294 14736 19234 19234 1 INAGMLAQFIDKPVCFVGR Unmodified 2135.102 0.10198601 1016 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 1 9 0 1 78.9 78.9 3 1.912E-10 23145 TMT1-8 92.236 74.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9387 1016 9295 14737 19235 19235 1 INALTAASEAACLIVSVDETIK Unmodified 2288.1934 0.19336302 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 7 0 1 99.976 99.976 3 8.531E-24 32544 TMT1-6 128.67 113.25 15.859 21.987 21.062 30.139 16.105 38.982 15 22 22 29 18 37 2 2 2 2 2 2 3732.2 9388 2496 9296 14738 19236;19237 19236 2 INALTAASEAACLIVSVDETIKNPR Unmodified 2655.3902 0.39016535 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 8 0 2 93.419 93.419 3;4 3.8145E-19 30328 TMT1-7 109.56 98.552 99.882 101.54 78.594 113.88 88.572 192.55 94 103 80 110 96 183 5 5 3 5 5 5 8636.2 9389 2496 9297 14739;14740 19238;19239;19240;19241;19242 19239 5 INEAIVAVQAIIADPK Unmodified 1663.9509 0.95087155 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 8.5 0.5 1 1 86.846 86.846 3 0.00020527 26188 TMT1-8 64.52 43.567 107.04 121.64 120.76 100.66 134.77 144.33 101 123 123 101 138 139 3 3 3 3 3 3 20976 9390 2947 9298 14741;14742 19243;19244;19245 19245 3 INEAVECLLSLK Unmodified 1387.7381 0.73810158 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 8 0 1 83.626 83.626 3 0.00040093 26767 TMT1-7 87.18 50.333 37.931 81.764 47.77 51.977 48.846 61.5 36 80 51 51 51 59 1 1 1 1 1 1 8442 9391 543 9299 14743 19246 19246 1 INEEISVK Unmodified 930.50221 0.50221163 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 0 5 0 1 48.874 48.874 2 0.0085815 13547 TMT1-4 101.65 47.489 130.37 209.92 91.838 118.38 155.89 175.71 123 207 102 116 160 169 1 1 1 1 1 1 13605 9392 2540 9300 14744 19247 19247 1 INEILSNALK Unmodified 1113.6394 0.63937381 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 8 0 1 69.26 69.26 2 0.00043764 21146 TMT1-7 117.52 67.805 177.32 199.46 146.16 122.11 192.35 205.58 167 201 152 123 196 198 1 1 1 1 1 1 36987 9393 1261 9301 14745 19248 19248 1 INEKPQVIADYESGR Unmodified 1717.8635 0.8635131 243 O60869-2;O60869-3;O60869 EDF1 Endothelial differentiation-related factor 1 yes no 0 0 0 0 1 5 0 1 50.016 50.016 3 0.0041494 13990 TMT1-4 63.681 49.453 61.293 94.579 78.018 57.421 70.348 98.197 58 94 80 58 73 94 1 1 1 1 1 1 9277.1 9394 243 9302 14746 19249 19249 1 INELGILDFMSLDAK Unmodified 1677.8648 0.86475866 3093 yes no 0 0 0 0 0 5 0 1 107.45 107.45 3 0.021928 33717 TMT1-4 46.746 19.717 29.686 36.883 28.889 27.133 34.87 44.843 28 37 30 27 36 43 1 1 1 1 1 1 12146 9395 3093 9303 14747 19250 19250 1 INELTGIK Unmodified 886.51238 0.51238239 1033 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 0 7 0 1 55.363 55.363 2 0.028656 15574 TMT1-6 82.749 26.371 108.3 130.71 82.163 80.419 112.96 136.42 102 131 87 80 116 131 1 1 1 1 1 1 17554 9396 1033 9304 14748 19251 19251 1 INENDPEYIR Unmodified 1261.5939 0.59388018 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 2 0 1 43.989 43.989 2 0.0009715 12569 TMT1-1 104.05 57.054 108.7 84.327 54.534 58.699 76.812 121.46 102 87 58 58 80 116 1 1 1 1 1 1 13350 9397 2854 9305 14749 19252 19252 1 INETRDVLAK Unmodified 1157.6404 0.64043645 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 6 0 1 42.92 42.92 3 0.023697 11336 TMT1-5 61.213 25.502 508.46 592.96 603.74 455.75 471.19 899.05 480 599 612 458 500 856 1 1 1 1 1 1 25143 9398 393 9306 14750 19253 19253 1 INEWLTK Unmodified 902.48617 0.48616764 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 8 0 1 61.165 61.165 2 0.0099567 17995 TMT1-7 110.12 0.64154 1648.5 1794.9 1119.9 1280.8 936.11 2248.1 1551 1809 1195 1249 1025 2134 1 1 1 1 1 1 192740 9399 1597 9307 14751 19254 19254 1 INFDKYHPGYFGK Unmodified 1584.7725 0.77251325 1131 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 1 9 0 1 54.281 54.281 4 0.025784 13505 TMT1-8 51.726 36.181 53.806 118.9 53.378 44.29 32.981 76.877 51 116 58 44 36 73 1 1 1 1 1 1 4761.4 9400 1131 9308 14752 19255 19255 1 INFDSNSAYR Unmodified 1185.5415 0.54145068 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 5 0 1 46.966 46.966 2 0.00080227 12822 TMT1-4 106.35 70.142 99.887 123.14 59.502 65.907 84.616 97.789 94 123 65 65 87 94 1 1 1 1 1 1 11007 9401 2831 9309 14753 19256 19256 1 INFDVNGYIVGANIETYLLEK Unmodified 2384.2264 0.22637771 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 6.67 0.471 1 2 93.697 93.697 3;4 6.0321E-18 30265 TMT1-6 117.38 114.41 184.94 286.17 275.06 171.38 244.05 217.96 175 285 278 176 248 211 7 8 8 8 8 8 25534 9402 1019 9310 14754;14755;14756 19257;19258;19259;19260;19261;19262;19263;19264 19259 8 INGDLQITK Unmodified 1000.5553 0.55530983 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 6 0 1 52.444 52.444 2 0.0011683 15114 TMT1-5 82.417 10.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9403 1934 9311 14757 19265 19265 1 INHEGEVNR Unmodified 1066.5156 0.51557028 1630 Q09028-3;Q09028;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 no no 0 0 0 0 0 2.5 0.5 1 1 23.038 23.038 3 0.0021749 4354 TMT1-1 87.258 52.434 77.423 141.07 32.648 67.075 107.6 97.134 73 138 36 65 109 94 2 2 1 2 2 2 10230 9404 1630 9312 14758;14759 19266;19267 19266 2 INHSNQSIK Unmodified 1039.5411 0.54105675 2169 Q8N2F6-6;Q8N2F6-4;Q8N2F6-5;Q8N2F6-3;Q8N2F6-2;Q8N2F6 ARMC10 Armadillo repeat-containing protein 10 yes no 0 0 0 0 0 7 0 1 29.729 29.729 3 0.047 5600 TMT1-6 45.368 13.996 15.777 29.315 28.568 21.806 28.555 22.637 15 29 29 22 29 22 1 1 1 1 1 1 1119.4 9405 2169 9313 14760 19268 19268 1 INIILSETDRDPLQVV Unmodified 1823.9993 0.9992783 2602 Q9GZT8;Q9GZT8-2 NIF3L1 NIF3-like protein 1 yes no 0 0 0 0 1 6 0 1 79.905 79.905 3 0.016943 25923 TMT1-5 51.265 32.808 46.612 50.147 58.284 27.563 35.106 37.374 44 51 58 29 36 36 1 1 1 1 1 1 5316 9406 2602 9314 14761 19269 19269 1 INIMNMNK 2 Oxidation (M) 1008.4732 0.47323646 2216 Q8NDL9-3;Q8NDL9-2;Q8NDL9 AGBL5 Cytosolic carboxypeptidase-like protein 5 yes no 0 0 2 0 0 1 0 1 43.435 43.435 3 0.032458 10237 TMT 1-phospho 53.17 27.611 31.774 57.08 21.612 41.602 44.104 30.721 30 56 25 40 45 30 1 1 1 1 1 1 4284.7 9407 2216 9315 14762 19270 19270 284;285 1 INISEGNCPER Unmodified 1287.5877 0.58774895 1843;1844 Q15365;Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5;P57721-2;P57721-3;P57721-5;P57721-4;P57721 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 0 0 0 3.25 0.829 1 1 2 40.147 40.147 2;3 2.5222E-08 10250 TMT1-3 157.68 111.68 545.19 771.58 590.71 455.01 551.98 618.52 515 769 610 458 568 595 6 6 6 6 6 6 172820 9408 1843;1844 9316 14763;14764;14765;14766 19271;19272;19273;19274;19275;19276 19274 6 INLHSSFVPLGELK Unmodified 1552.8613 0.86132826 414 P01133-2;P01133-3;P01133 EGF Pro-epidermal growth factor;Epidermal growth factor yes no 0 0 0 0 0 8 0 1 63.594 63.594 3 0.0074194 19006 TMT1-7 55.656 26.68 61.299 103.23 69.586 65.036 99.006 136.82 58 102 73 65 102 131 1 1 1 1 1 1 7125.4 9409 414 9317 14767 19277 19277 1 INLIAPPR Unmodified 892.54944 0.54943659 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 0 9 0 1 53.311 53.311 2 0.0056698 13104 TMT1-8 91.626 56.133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9410 492 9318 14768 19278 19278 1 INLQGDIVDR Unmodified 1141.6091 0.60913632 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 0 4 0 1 53.248 53.248 2 8.7194E-05 15545 TMT1-3 140.78 72.556 107.69 199.18 125.79 77.555 126.96 189.32 102 196 131 80 131 181 1 1 1 1 1 1 35477 9411 1023 9319 14769 19279 19279 1 INMVEELEK Unmodified 1103.5533 0.55326092 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 5 0 1 62.36 62.36 3 0.029972 18802 TMT1-4 51.762 24.433 54.305 42.584 34.107 45.262 42.376 45.695 51 44 36 44 44 44 1 1 1 1 1 1 5359.2 9412 1820 9320 14770 19280 19280 1 INNACFEAVVVTNTIPQEDK Unmodified 2261.0998 0.099796984 1360 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 0 0 5 0 1 68.122 68.122 4 0.00037353 21123 TMT1-4 56.327 39.643 30.528 58.831 49.173 52.193 32.911 68.351 29 58 51 51 36 65 1 1 1 1 1 1 7508.3 9413 1360 9321 14771 19281 19281 1 INNVIDNLIVAPGTFEVQIEEVR Unmodified 2581.3752 0.37516721 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 6 0 1 90.962 90.962 3 1.2903E-06 30036 TMT1-5 74.876 66.215 16.02 14.88 0 7.3623 15.352 0 15 15 0 7 15 0 1 1 0 1 1 0 4096.7 9414 1654 9322 14772 19282 19282 1 INNVPAEGENEVNNELANR Unmodified 2094.993 0.99302373 2751 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 0 2 0 1 52.437 52.437 3 3.1744E-39 15871 TMT1-1 169.58 165.92 30.504 43.656 66.015 34.612 42.609 53.15 29 44 65 36 44 51 1 1 1 1 1 1 43256 9415 2751 9323 14773 19283 19283 1 INPSSMFDVHVK Unmodified 1372.6809 0.68092105 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 8 0 1 59.46 59.46 3 0.00011962 17319 TMT1-7 97.273 58.007 292.23 405.95 314.98 316.28 317.1 364.05 276 405 328 312 329 350 2 2 2 2 2 2 24545 9416 648 9324 14774 19284;19285 19284 2 INPSSMFDVQVK Unmodified 1363.6806 0.6805867 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 8 0 1 67.155 67.155 3 0.010047 20330 TMT1-7 59.116 34.825 68.628 102.21 101.05 63.685 71.123 67.26 65 102 102 65 73 65 1 1 1 1 1 1 10091 9417 515 9325 14775 19286 19286 1 INQDGTFLVR Unmodified 1161.6142 0.6142217 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 6 0 1 52.74 52.74 2 0.00071651 15218 TMT1-5 108.93 62.539 138.88 204.8 109.03 78.541 127.69 166.92 131 203 116 80 131 160 1 1 1 1 1 1 21234 9418 1669 9326 14776 19287 19287 1 INQDPQVMLAPLISIALK Unmodified 1963.1176 0.1176193 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 9 0 1 93.217 93.217 3 2.4692E-11 28560 TMT1-8 107.75 86.792 69.635 94.399 118.79 40.216 42.351 53.157 66 95 117 44 44 51 2 2 2 2 2 2 11492 9419 1043 9327 14777 19288;19289 19288 2 INQEELASGTPPAR Unmodified 1481.7474 0.74742071 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 3 0 1 43.396 43.396 2 0.022357 12704 TMT1-2 61.423 29.103 15.827 53.197 0 23.648 21.141 22.849 15 51 0 22 22 22 1 1 0 1 1 1 4596.4 9420 126 9328 14778 19290 19290 1 INQEEVGLAAPAPTAR Unmodified 1635.858 0.8580338 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 4 0 1 49.978 49.978 3 2.3121E-09 14269 TMT1-3 94.366 71.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9421 1079 9329 14779 19291 19291 1 INQQEEPGFEVITR Unmodified 1658.8264 0.82639932 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 0 3 0 1 55.687 55.687 3 0.037907 17476 TMT1-2 41.912 20.662 23.211 36.142 35.727 21.084 44.293 22.188 22 36 36 22 44 22 1 1 1 1 1 1 4234.4 9422 2245 9330 14780 19292 19292 1 INSENADALAQLLTLAR Unmodified 1811.9741 0.97412619 2141 Q8IWV7 UBR1 E3 ubiquitin-protein ligase UBR1 yes yes 0 0 0 0 0 8 0 1 82.943 82.943 3 3.4469E-05 26485 TMT1-7 78.78 58.941 30.83 13.262 37.045 21.448 20.729 37.784 29 15 36 22 22 36 1 1 1 1 1 1 4236 9423 2141 9331 14781 19293 19293 1 INSITVDNCK Unmodified 1162.5652 0.56522259 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 6 0 1 47.403 47.403 2 3.0038E-10 13119 TMT1-5 178.84 120.41 416.19 568.01 622.36 324.81 574.79 494.21 394 570 622 341 580 479 2 2 2 2 2 2 60253 9424 1555;1556 9332 14782 19294;19295 19294 2 INSITVDNCKK Unmodified 1290.6602 0.66018561 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 7.67 0.471 1 2 43.701 43.701 3;4 2.8007E-06 11124 TMT1-6 121.9 105.23 1451.9 2434.1 2244.3 1870.5 2340.2 2544.9 1377 2415 2293 1874 2403 2450 3 3 3 3 3 3 119620 9425 1555;1556 9333 14783;14784;14785 19296;19297;19298 19296 3 INSTATPDQDRDK Unmodified 1459.6903 0.69029976 2628 Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 1 4 0 1 32.513 32.513 3 0.017839 7363 TMT1-3 55.815 30.762 37.93 50.459 74.589 26.443 42.984 53.139 36 51 73 29 44 51 1 1 1 1 1 1 5306.3 9426 2628 9334 14786 19299 19299 1 INVELSTK Unmodified 902.5073 0.50729701 2443 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 0 6 0 1 51.156 51.156 2 0.0060071 14593 TMT1-5 111.06 48.18 91.797 169.53 117.55 109.92 117.35 182.14 87 167 123 109 123 174 1 1 1 1 1 1 18452 9427 2443 9335 14787 19300 19300 1 INVLAAQYQSLLNSYGEPVDDK Unmodified 2436.2173 0.21726958 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 7 0 1 82.62 82.62 3 0.0027984 26379 TMT1-6 46.065 31.06 38.249 35.158 33.902 61.688 41.364 53.186 36 36 36 59 44 51 1 1 1 1 1 1 15726 9428 68 9336 14788 19301 19301 1 INVNEIFYDLVR Unmodified 1493.7878 0.78782897 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 0 7.5 1.12 1 1 1 1 86.249 86.249 2 7.2183E-44 27687 TMT1-6 224.42 171.93 2846.2 3570.7 3548.3 2899.2 3605.4 3679.3 2689 3592 3610 2908 3695 3548 8 8 8 8 8 8 1342100 9429 1384;1447 9337 14789;14790;14791;14792 19302;19303;19304;19305;19306;19307;19308;19309 19303 8 INVSEYTYR Unmodified 1143.556 0.55603812 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 5 0 1 49.36 49.36 2 0.00090395 13751 TMT1-4 86.18 45.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9430 1565 9338 14793 19310 19310 1 INVSGLTTK Unmodified 931.53385 0.53384611 756 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 0 8 0 1 52.745 52.745 2 0.0078888 14723 TMT1-7 91.855 50.868 115.46 144.34 128.72 84.86 136.08 127.23 109 145 131 87 138 123 1 1 1 1 1 1 14841 9431 756 9339 14794 19311 19311 1 INVYYNEATGGK Unmodified 1327.6408 0.64083038 1493 P68371 TUBB4B Tubulin beta-4B chain yes yes 0 0 0 0 0 3.5 2.5 1 1 53.457 53.457 3 1.4284E-05 15473 TMT1-5 107.09 90.835 590.88 686.06 557.73 600.9 744.94 804.89 557 691 581 593 765 775 2 2 2 2 2 2 176640 9432 1493 9340 14795;14796 19312;19313;19314 19313 3 INYMYAQYVK Unmodified 1291.6271 0.62709457 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 8 0 1 61.277 61.277 2 4.9596E-06 18057 TMT1-7 154.49 133.59 46.399 57.108 88.277 49.319 61.795 114.43 44 58 87 51 65 109 1 1 1 1 1 1 8505.7 9433 322 9341 14797 19315 19315 1 INYTEGR Unmodified 851.41373 0.41373097 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 4 0 1 34.453 34.453 2 0.040882 8110 TMT1-3 85.813 45.61 383.25 631.6 515.45 432.39 598.24 672.63 363 626 531 434 613 647 1 1 1 1 1 1 47400 9434 516 9342 14798 19316 19316 1 IPAANILGHENK Unmodified 1275.6935 0.69353465 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 48.822 48.822 3 0.0061335 13131 TMT1-6 63.727 30.502 99.802 122.9 74.031 104.42 141.15 166.53 94 123 80 102 145 160 1 1 1 1 1 1 16605 9435 898 9343 14799 19317 19317 1 IPACIAGER Unmodified 985.5015 0.50150012 1349 P59666;P59665 DEFA3;DEFA1 Neutrophil defensin 3;HP 3-56;Neutrophil defensin 2;Neutrophil defensin 1;HP 1-56;Neutrophil defensin 2 yes no 0 0 0 0 0 5.5 0.5 1 1 45.141 45.141 2 0.00064249 12175 TMT1-5 132.08 83.329 503.43 717.47 622.54 303.86 874.57 382.26 476 716 630 327 862 382 3 3 3 3 3 3 88000 9436 1349 9344 14800;14801 19318;19319;19320 19319 3 IPADTFAALK Unmodified 1045.5808 0.5807963 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7.5 0.5 1 1 64.58 64.58 2;3 0.00015039 19308 TMT1-7 107.15 74.313 106.65 135.65 174.92 104.93 200.83 194.68 101 137 174 109 203 188 2 2 2 2 2 2 15364 9437 1139 9345 14802;14803 19321;19322 19322 2 IPAEVLILNSIVLPHK Unmodified 1755.0658 0.065841726 2420 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 0 9 0 2 82.65 82.65 3;4 0.0019213 24594 TMT1-8 54.598 40.692 68.968 79.411 63.304 42.963 72.075 67.233 65 80 65 44 73 65 2 2 2 2 2 2 7299 9438 2420 9346 14804;14805 19323;19324 19324 2 IPAFLNVVDIAGLVK Unmodified 1567.9338 0.93376492 2745 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 9 0 1 93.509 93.509 3 3.2141E-16 28736 TMT1-8 124.3 80.099 245.75 301.14 280.18 223.67 295.53 263.4 232 303 286 225 301 255 3 3 3 3 3 3 39262 9439 2745 9347 14806 19325;19326;19327 19326 3 IPAGAVLEMAVGALHHDPEHWPSPETFNPER Unmodified 3403.6408 0.64079416 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7.5 0.5 1 1 77.471 77.471 5 0.0030013 24371 TMT1-6 39.062 33.461 123.3 113.44 100.14 87.004 112.65 136.43 116 116 103 87 116 131 2 2 2 2 2 2 27751 9440 876 9348 14807;14808 19328;19329 19328 2 IPAMTIAK Unmodified 843.48881 0.48881017 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 56.423 56.423 2 0.0069152 14324 TMT1-8 101.33 44.046 275.11 449.37 269.1 293.64 329.35 403.14 260 444 287 289 341 387 1 1 1 1 1 1 42596 9441 638 9349 14809 19330 19330 1 IPASWTNPSGK Unmodified 1156.5877 0.58767259 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 9 0 1 54.908 54.908 3 0.012909 13739 TMT1-8 54.343 32.948 77.349 93.369 85.597 57.122 62.242 90.966 73 94 87 58 65 87 1 1 1 1 1 1 14789 9442 934 9350 14810 19331 19331 1 IPCFLAGDTR Unmodified 1148.5648 0.56482866 489 P05164-2;P05164;P05164-3;P11678 MPO;EPX Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain;Eosinophil peroxidase;Eosinophil peroxidase light chain;Eosinophil peroxidase heavy chain yes no 0 0 0 0 0 7.5 0.5 1 1 60.989 60.989 2 8.8871E-10 17964 TMT1-7 176.75 125.69 498.67 843.83 593.38 497.36 848.37 672.96 472 834 618 502 855 654 3 3 3 3 3 3 132470 9443 489 9351 14811;14812 19332;19333;19334 19334 3 IPCVDAGLISPLVQLLNSK Unmodified 2036.134 0.13399765 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 9 0 2 96.186 96.186 3;4 4.8443E-21 29641 TMT1-8 126.25 111.09 92.07 147.63 90.225 72.802 85.566 91.366 87 146 95 73 88 88 3 3 3 3 3 3 16348 9444 1264 9352 14813;14814 19335;19336;19337 19335 3 IPDEFDNDPILVQQLR Unmodified 1910.9738 0.97379183 1933 Q3ZCQ8-2;Q3ZCQ8 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 0 0 0 0 0 4 0 1 73.217 73.217 3 1.7549E-08 23373 TMT1-3 104.41 86.319 23.173 44.671 34.865 28.96 35.042 37.376 22 44 36 29 36 36 1 1 1 1 1 1 10257 9445 1933 9353 14815 19338 19338 1 IPDIVLWPTCHDDVVK Unmodified 1905.9659 0.96586969 38 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 0 7 0 2 71.845 71.845 3;4 0.00048664 22142 TMT1-6 68.919 46.045 91.957 153.79 103.97 96.104 81.615 144.78 87 152 109 95 87 138 2 2 2 2 2 2 14131 9446 38 9354 14816;14817 19339;19340 19339 2 IPDPEAVKPDDWDEDAPAK Unmodified 2106.9746 0.9745797 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 4 0 1 60.559 60.559 3 2.0871E-06 18439 TMT1-3 82.609 61.301 45.977 87.235 133.57 60.799 121.48 127.65 44 87 131 65 123 123 1 1 1 1 1 1 14009 9447 920 9355 14818 19341 19341 1 IPDWFLNR Unmodified 1059.5502 0.55016488 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 0 9 0 1 71.016 71.016 2 0.0039674 20085 TMT1-8 130.04 80.616 249.64 358.01 299.26 349.91 438.67 373.37 236 357 312 344 447 362 1 1 1 1 1 1 87398 9448 1425 9356 14819 19342 19342 1 IPDWTPQAYDPLDVLVPYFVPNTPAAR Unmodified 3054.5491 0.54910883 1252 P51688 SGSH N-sulphoglucosamine sulphohydrolase yes yes 0 0 0 0 0 8 0 1 100.28 100.28 4 0.00078397 32738 TMT1-7 43.681 36.649 7.4211 10.029 6.6154 7.1714 4.5389 10.53 7 10 7 7 5 10 1 1 1 1 1 1 2083.5 9449 1252 9357 14820 19343 19343 1 IPEAPAGPPSDFGLFLSDDDPK Unmodified 2284.0899 0.089943804 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 0.5 2 2 79.429 79.429 3;4 1.8314E-17 25453 TMT1-4 108.13 78.996 947.12 1059.6 961.68 802.29 1077.2 1065.1 893 1071 985 805 1100 1028 6 6 6 6 6 6 460590 9450 3010 9358 14821;14822;14823;14824 19344;19345;19346;19347;19348;19349 19344 6 IPEAPAGPPSDFGLFLSDDDPKK Unmodified 2412.1849 0.18490682 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6 0 1 72.24 72.24 4 3.1331E-13 22836 TMT1-5 100.64 86.178 582.19 715.67 730.83 489.56 711.36 744.02 550 721 738 500 726 717 3 3 3 3 3 3 141360 9451 3010 9359 14825 19350;19351;19352 19350 3 IPEDEIWQSEPESVDVPAQPITTTFLER Unmodified 3225.5718 0.57175434 908 P27338 MAOB Amine oxidase [flavin-containing] B yes yes 0 0 0 0 0 4 0 2 81.381 81.381 3;4 8.6975E-05 26559 TMT1-3 43.31 34.167 7.3579 30.36 0 15.996 21.236 30.308 7 29 0 15 22 29 1 1 0 1 1 1 11914 9452 908 9360 14826;14827 19353;19354 19354 2 IPEEFNVFNLIQEMR Unmodified 1877.9346 0.93456956 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 7.5 0.5 1 1 93.93 93.93 3 6.5662E-15 30481 TMT1-7 132.44 114.05 46.625 75.006 35.057 44.491 80.36 37.149 44 74 37 44 80 37 3 3 2 3 3 3 10945 9453 1592 9361 14828;14829 19355;19356;19357 19356 3 IPEFNWSQMHQR Unmodified 1571.7303 0.73033086 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 55.341 55.341 3 1.4173E-05 15731 TMT1-7 107.17 95.727 53.861 87.757 70.518 65.807 55.026 76.248 51 87 73 65 58 73 1 1 1 1 1 1 8019.3 9454 1229 9362 14830 19358 19358 1 IPEGDLIR Unmodified 911.50763 0.50763136 1010 P34947 GRK5 G protein-coupled receptor kinase 5 yes yes 0 0 0 0 0 4 0 1 51.291 51.291 2 0.0013594 14786 TMT1-3 89.142 28.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9455 1010 9363 14831 19359 19359 1 IPEIHFPLESK Unmodified 1308.7078 0.70778773 8 A2RUS2-2;A2RUS2 DENND3 DENN domain-containing protein 3 yes no 0 0 0 0 0 7 0 1 64.087 64.087 3 0.0051967 19072 TMT1-6 67.548 29.851 54.02 64.455 63.576 58.696 48.317 67.911 51 65 65 58 51 65 1 1 1 1 1 1 7000.5 9456 8 9364 14832 19360 19360 1 IPEISIQDMTAQVTSPSGK Unmodified 2001.0089 0.0088567119 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7 0.707 1 2 1 73.331 73.331 3;4 1.939E-23 22651 TMT1-6 135.09 115.51 344 524.41 530.18 372.08 503.85 668.93 326 523 536 378 520 641 5 5 5 5 5 5 220500 9457 831 9365 14833;14834;14835;14836 19361;19362;19363;19364;19365 19362 5 IPELAINPLGDR Unmodified 1306.7245 0.72450043 2481 Q99653 CHP1 Calcineurin B homologous protein 1 yes yes 0 0 0 0 0 6 0 1 69.447 69.447 2 1.6476E-05 21817 TMT1-5 93.258 59.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9458 2481 9366 14837 19366 19366 1 IPENNPVK Unmodified 909.49198 0.4919813 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 5 0 1 42.261 42.261 2 0.010493 10895 TMT1-4 99.139 62.118 99.702 122.63 91.008 63.742 99.871 113.34 94 123 94 65 102 109 1 1 1 1 1 1 34583 9459 3046 9367 14838 19367 19367 1 IPEQTYITLK Unmodified 1204.6703 0.67033959 1971 Q5SW79-2;Q5SW79-3;Q5SW79 CEP170 Centrosomal protein of 170 kDa yes no 0 0 0 0 0 7 0 1 61.142 61.142 3 0.003211 17958 TMT1-6 77.64 55.984 46.612 50.146 58.304 27.128 58.161 36.716 44 51 58 29 58 36 1 1 1 1 1 1 4669.8 9460 1971 9368 14839 19368 19368 1 IPESGGDNSVFDIFELTGAAR Unmodified 2194.0542 0.054227 554;32 CON__Q28194;P07996 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6.25 1.09 1 2 1 86.688 86.688 3 4.2365E-53 28080 TMT1-4 201.22 196.02 351.34 337.42 356.9 310.99 465.37 439.77 331 345 363 312 473 425 8 8 8 8 8 8 376990 + 9461 32;554 9369 14840;14841;14842;14843 19369;19370;19371;19372;19373;19374;19375;19376 19370 8 IPGGIIEDSCVLR Unmodified 1427.7442 0.74424959 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 5.5 0.5 1 1 63.327 63.327 2 2.9557E-05 19381 TMT1-5 108.31 58.029 123.56 212.55 153.18 147.39 162.47 158.46 117 210 160 146 167 153 3 3 3 3 3 3 34031 9462 1178 9370 14844;14845 19377;19378;19379 19379 3 IPGTCCDTCEEPECNDITAR Unmodified 2396.9341 0.93412992 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 2 0 1 49.612 49.612 3 6.951E-10 14732 TMT1-1 95.145 93.207 22.982 75.438 40.95 45.258 20.925 38.845 22 73 44 44 22 37 2 2 2 2 1 2 12680 9463 471 9371 14846 19380;19381 19380 2 IPGTGALASAAAAVSGSK Unmodified 1527.8257 0.82567103 260 O75298-3;O75298;O75298-2 RTN2 Reticulon-2 yes no 0 0 0 0 0 9 0 1 66.968 66.968 3 9.4858E-14 18480 TMT1-8 97.095 81.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9464 260 9372 14847 19382 19382 1 IPHFGYCDEIDLTELVK Unmodified 2047.9925 0.99247837 646 P11182 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 6 0 1 74.933 74.933 3 0.0024811 23927 TMT1-5 55.975 38.756 30.764 35.744 29.078 0 44.75 37.099 29 36 29 0 44 36 1 1 1 0 1 1 6938.8 9465 646 9373 14848 19383 19383 1 IPIEDGSGEVVLSR Unmodified 1469.7726 0.77257283 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 4 0 2 59.142 59.142 2;3 0.00042355 17868 TMT1-3 87.216 54.861 84.675 123.64 91.01 64.033 84.43 136.17 80 123 94 65 88 130 2 2 2 2 2 2 17275 9466 409 9374 14849;14850 19384;19385 19385 2 IPIFSAAGLPHNEIAAQICR Unmodified 2177.1415 0.14154264 828 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 0 9 0 1 67.113 67.113 3 8.3965E-25 18515 TMT1-8 130.56 104.97 46.642 65.339 40.43 67.858 41.337 45.724 44 65 44 65 44 44 1 1 1 1 1 1 19378 9467 828 9375 14851 19386 19386 1 IPIGFIPLGETSSLSHTLFAESGNK Unmodified 2614.3643 0.36426817 1949 Q53H12 AGK Acylglycerol kinase, mitochondrial yes yes 0 0 0 0 0 9 0 2 81.129 81.129 3;4 7.7776E-05 24041 TMT1-8 53.304 35.246 15.498 59.839 49.544 44.218 48.983 67.892 15 58 51 44 51 65 1 1 1 1 1 1 5521.2 9468 1949 9376 14852;14853 19387;19388 19388 2 IPILYGEVEKLEESAVTVMFDK Unmodified 2509.3026 0.30257912 2799 Q9NZL9-4;Q9NZL9-2;Q9NZL9;Q9NZL9-3 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 1 7 0 1 101.34 101.34 4 0.0059052 32944 TMT1-6 41.257 28.58 7.416 11.094 6.5567 7.0545 10.936 7.1499 7 11 7 7 11 7 1 1 1 1 1 1 1139.2 9469 2799 9377 14854 19389 19389 1 IPISLVLR Unmodified 909.60114 0.60113781 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 9 0 1 68.772 68.772 2 0.0071383 19168 TMT1-8 105.04 26.862 130.15 189.86 147.27 115.5 133.61 158.22 123 189 152 116 138 152 1 1 1 1 1 1 25829 9470 367 9378 14855 19390 19390 1 IPLIFQK Unmodified 857.53747 0.53747492 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 9 0 1 68.636 68.636 2 0.022466 19148 TMT1-8 93.593 25.195 330.07 490.69 375.77 387.67 396.57 513.16 312 488 392 382 413 492 2 2 2 2 2 2 48755 9471 2172 9379 14856 19391;19392 19392 2 IPLKDVVPR Unmodified 1035.6441 0.64406526 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 1 9 0 1 51.579 51.579 3 0.012094 12396 TMT1-8 59.426 40.46 450.74 616.98 545.11 385.89 303.59 755.66 426 617 556 388 332 717 1 1 1 1 1 1 34352 9472 1083 9380 14857 19393 19393 1 IPLLSDLTHQISK Unmodified 1463.8348 0.83477916 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 0 9 0 1 70.792 70.792 3 3.0251E-29 19950 TMT1-8 192.18 113.84 253.75 287.94 209.93 165.89 219.45 241.05 239 290 218 167 225 232 2 2 2 2 2 2 26522 9473 1679 9381 14858 19394;19395 19394 2 IPMFIVHK Unmodified 983.56264 0.56264382 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 9 0 1 59.738 59.738 3 0.0031501 15636 TMT1-8 77.674 43.596 99.349 137.83 137.48 68.761 150.67 150.27 94 138 138 73 152 145 1 1 1 1 1 1 9018.3 9474 1150 9382 14859 19396 19396 1 IPMPDFDLHLK Unmodified 1324.6849 0.6849438 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 70.1 70.1 3 0.015413 21467 TMT1-7 56.404 30.745 46.781 34.425 43.315 44.713 42.401 45.694 44 36 44 44 44 44 1 1 1 1 1 1 9671.2 9475 1632 9383 14860 19397 19397 1 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR Unmodified 3724.8526 0.85256107 1548 Q01105-3;Q01105-4;Q01105-2;Q01105 SET Protein SET yes no 0 0 0 0 0 8 0 1 87.317 87.317 4 3.4384E-27 28141 TMT1-7 113.37 102.95 61.379 95.899 62.347 67.384 55.195 99.695 58 95 66 66 59 95 3 3 3 3 3 3 39566 9476 1548 9384 14861 19398;19399;19400 19399 3 IPNIYAIGDVVAGPMLAHK Unmodified 1978.071 0.071003459 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 2 77.92 77.92 3;4 3.4558E-08 22851 TMT1-8 73.11 53.271 99.897 100.5 77.094 65.824 91.399 113.59 94 102 80 66 94 109 2 2 2 2 2 2 14550 9477 600 9385 14862;14863 19401;19402 19402 2 IPQAIAQLSK Unmodified 1067.6339 0.63389451 1906 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 0 9 0 1 62.332 62.332 2 0.0047359 16641 TMT1-8 92.538 64.432 68.755 125.23 60.207 50.801 71.972 59.774 65 123 65 51 73 58 1 1 1 1 1 1 11897 9478 1906 9386 14864 19403 19403 1 IPQSTLSEFYPR Unmodified 1436.73 0.72997974 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 7 0 1 63.587 63.587 2 0.0079784 18913 TMT1-6 75.788 44.41 61.7 56.857 41.56 52.209 56.201 60.224 58 58 44 51 58 58 1 1 1 1 1 1 15421 9479 828 9387 14865 19404 19404 1 IPSAVGYQPTLATDMGTMQER Unmodified 2265.077 0.076953052 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0 1 65.072 65.072 3 0.00013678 20084 TMT1-5 62.611 44.554 161.06 182.84 187.7 112.65 156.77 157.56 152 185 189 116 160 152 1 1 1 1 1 1 36673 9480 508 9388 14866 19405 19405 1 IPSENNK Unmodified 800.40283 0.40283194 1255 P51809;P51809-2 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 0 5 0 1 35.993 35.993 2 0.0041958 8455 TMT1-4 84.097 43.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9481 1255 9389 14867 19406 19406 1 IPSEQEQLR Unmodified 1098.5669 0.56693715 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 3 0 1 40.07 40.07 2 0.034331 11324 TMT1-2 72.275 33.999 85.127 86.043 46.924 59.847 39.873 99.066 80 87 51 58 44 94 1 1 1 1 1 1 9352.4 9482 2328 9390 14868 19407 19407 1 IPSGQPETADVSR Unmodified 1355.6681 0.66810776 2103 Q86TP1;Q86TP1-2;Q86TP1-5;Q86TP1-4;Q86TP1-3;Q86TP1-6;Q86TP1-7 PRUNE Protein prune homolog yes no 0 0 0 0 0 4 0 1 40.521 40.521 2 1.6837E-07 10484 TMT1-3 117.21 87.898 38.065 43.279 58.021 43.687 50.327 29.478 36 44 58 44 51 29 1 1 1 1 1 1 10812 9483 2103 9391 14869 19408 19408 1 IPSVVTGTDIVQWLMK Unmodified 1785.9699 0.96989243 1200 P49758-2;P49758-6;P49758-11;P49758-7;P49758-10;P49758-9;P49758-16;P49758-5;P49758-8;P49758-3;P49758;P49758-13;P49758-14;P49758-15 RGS6 Regulator of G-protein signaling 6 yes no 0 0 0 0 0 9 0 1 93.729 93.729 3 1.1442E-09 28759 TMT1-8 109.84 80.483 23.33 21.361 28.33 37.018 34.122 53.392 22 22 29 36 36 51 1 1 1 1 1 1 4967.5 9484 1200 9392 14870 19409 19409 1 IPTEAPQLELK Unmodified 1237.6918 0.69180331 1988 Q5VW32-2;Q5VW32 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 0 6 0 1 60.97 60.97 2 0.0028689 18472 TMT1-5 91.313 59.379 61.458 79.929 62.626 58.339 70.306 98.198 58 80 65 58 73 94 1 1 1 1 1 1 12021 9485 1988 9393 14871 19410 19410 1 IPTHLFTFIQFK Unmodified 1490.8286 0.82857157 626 P10155;P10155-3;P10155-5;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 9 0 1 74.562 74.562 3 0.026142 21448 TMT1-8 44.616 9.3918 30.638 35.393 50.582 52.115 32.621 76.887 29 36 51 51 36 73 1 1 1 1 1 1 4681.5 9486 626 9394 14872 19411 19411 1 IPTISTQLK Unmodified 999.59645 0.59644637 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 8.67 0.471 1 2 57.396 57.396 2;3 2.9093E-06 14693 TMT1-8 160.56 96.296 1928.1 2217.6 2455.2 1723.4 2111.2 2283.9 1821 2245 2472 1747 2169 2199 4 4 4 4 4 4 471980 9487 776 9395 14873;14874;14875 19412;19413;19414;19415 19414 4 IPVDTYNNILTVLK Unmodified 1601.9029 0.90285872 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 8.5 0.5 1 1 81.236 81.236 3 1.0252E-05 25884 TMT1-7 98.942 87.837 100.74 131.08 90.148 71.555 152.1 135.31 95 131 94 73 153 131 2 2 2 2 2 2 23801 9488 2444 9396 14876;14877 19416;19417 19416 2 IPVEADFLYAYSTAPGYYSWR Unmodified 2468.1689 0.16886283 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 0 7.5 0.5 1 1 86.347 86.347 3 2.6905E-07 27743 TMT1-6 82.765 68.456 34.999 43.925 31.746 25.783 39.486 34.051 33 44 33 26 40 33 2 2 2 2 2 2 23982 9489 1099 9397 14878;14879 19418;19419 19418 2 IPVENILGEVGDGFK Unmodified 1585.8352 0.83517309 2659 Q9H845 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 0 0 0 0 0 6 0 1 81.219 81.219 3 0.00027119 26376 TMT1-5 77.222 60.969 30.733 35.659 34.281 53.343 18.969 46.363 29 36 36 51 22 44 1 1 1 1 1 1 9464.2 9490 2659 9398 14880 19420 19420 1 IPVGPETLGR Unmodified 1037.5869 0.58694431 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0 1 52.4 52.4 2 1.73E-14 15104 TMT1-5 188.98 146.91 391.47 532.7 479.21 479.51 532.09 464.52 370 533 494 474 545 450 1 1 1 1 1 1 114010 9491 508 9399 14881 19421 19421 1 IPVHPNDHVNK Unmodified 1268.6626 0.66256887 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 6 0 1 34.225 34.225 4 2.4198E-05 7924 TMT1-5 110.39 74.973 236.05 538.4 447.33 427.88 472.6 438.5 225 528 462 424 485 424 1 1 1 1 1 1 48329 9492 553 9400 14882 19422 19422 1 IPVIENLGATLDQFDAIDFSDNEIR Unmodified 2804.3869 0.38685411 602 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 0 5 0 2 97.513 97.513 3;4 5.4112E-06 32343 TMT1-4 55.986 41.525 7.476 6.9439 0 7.5265 6.6166 10.471 7 7 0 7 7 10 1 1 0 1 1 1 1073.2 9493 602 9401 14883;14884 19423;19424 19424 2 IPVQALLHLR Unmodified 1158.7237 0.72371257 1045 P36915;P36915-2 GNL1 Guanine nucleotide-binding protein-like 1 yes no 0 0 0 0 0 9 0 1 62.766 62.766 3 0.0032375 16777 TMT1-8 70.028 48.728 38.147 34.874 51.317 35.484 42.825 45.682 36 36 51 36 44 44 1 1 1 1 1 1 5035.6 9494 1045 9402 14885 19425 19425 1 IPVQLVFK Unmodified 942.59024 0.59023878 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 9 0 1 70.363 70.363 2 0.0070931 19823 TMT1-8 117.93 60.375 92.602 54.131 79.964 64.672 85.442 75.38 87 58 80 65 87 73 1 1 1 1 1 1 7336.7 9495 2056 9403 14886 19426 19426 1 IPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGR Unmodified 3969.0623 0.062279076 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 1 6 0 1 95.098 95.098 4 0.014671 31428 TMT1-5 31.137 26.821 15.939 14.653 13.885 6.8235 0 7.462 15 15 14 7 0 7 1 1 1 1 0 1 2466.8 9496 1912 9404 14887 19427 19427 1 IPVTLNMK Unmodified 914.52592 0.52592396 351 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 0 9 0 1 59.872 59.872 2 0.011847 15680 TMT1-8 86.833 50.132 92.161 139.25 82.067 72.919 105.2 159.03 87 138 87 73 109 152 1 1 1 1 1 1 14219 9497 351 9405 14888 19428 19428 1 IPWFQYPIIYDIR Unmodified 1722.9134 0.91336383 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 9 0 1 88.376 88.376 3 6.0753E-11 26760 TMT1-8 122.42 91.075 68.923 79.288 70.884 67.288 33.248 115.25 65 80 73 66 36 109 2 2 2 2 1 2 33400 9498 2479 9406 14889 19429;19430 19429 2 IPYKDTFWK Unmodified 1196.623 0.62299547 1700 Q13418;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 1 9 0 1 59.633 59.633 3 0.0088625 15515 TMT1-8 64.439 40.589 2937.2 3759.7 3772.2 2659.1 3166.7 4470 2776 3779 3818 2693 3291 4278 2 2 2 2 2 2 243240 9499 1700 9407 14890 19431;19432 19431 2 IPYKYEHNK Unmodified 1190.6084 0.60840804 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 1 8 0 1 37.076 37.076 4 0.0056745 8496 TMT1-7 76.17 47.887 678.27 884.87 850.95 687.75 486.44 1119.3 641 888 867 684 532 1063 1 1 1 1 1 1 32522 9500 1211 9408 14891 19433 19433 1 IPYLGVYVFK Unmodified 1197.6798 0.67978207 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 9 0 2 78.556 78.556 2 1.1274E-12 22961 TMT1-8 154.35 111.96 68.982 87.004 54.569 58.79 71.861 52.315 65 87 58 58 73 51 1 1 1 1 1 1 41404 9501 1684 9409 14892;14893 19434;19435 19435 2 IQAAEYGLAVLEEK Unmodified 1532.8086 0.80862399 2250 Q8TD16;Q8TD16-2 BICD2 Protein bicaudal D homolog 2 yes no 0 0 0 0 0 5 0 1 75.975 75.975 3 0.0082581 24191 TMT1-4 38.948 20.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9502 2250 9410 14894 19436 19436 1 IQAGAEAK Unmodified 786.42357 0.42356738 2927 Q9UNF1-2;Q9UNF1 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 0 0 5 0 1 35.272 35.272 2 0.0010381 8168 TMT1-4 110.87 27.607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9503 2927 9411 14895 19437 19437 1 IQALQQQADEAEDR Unmodified 1613.7645 0.76452734 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 0 2.8 1.17 1 1 1 2 49.284 49.284 2;3 1.1516E-43 15003 TMT1-2 214.14 203.03 881.03 1143.1 817.85 792.9 986.1 1079.4 831 1143 856 787 1013 1039 9 9 9 9 9 9 825100 9504 1486 9412 14896;14897;14898;14899;14900 19438;19439;19440;19441;19442;19443;19444;19445;19446 19443 9 IQAQFGPLAQLSPQER Unmodified 1781.9424 0.94243213 1253 P51692 STAT5B Signal transducer and activator of transcription 5B yes yes 0 0 0 0 0 8 0 1 65.376 65.376 3 0.0042597 19630 TMT1-7 54.004 30.632 107.51 159.8 190.75 81.195 134.34 182.72 102 160 189 87 138 175 2 2 2 2 2 2 7914.7 9505 1253 9413 14901 19447;19448 19447 2 IQASGILQLFASLLTPQSSCK Unmodified 2261.209 0.2089535 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 9 0 2 104.96 104.96 3;4 5.2508E-13 32737 TMT1-8 85.737 72.325 77.673 80.241 42.175 36.981 72.314 68.292 73 81 44 37 73 66 3 3 2 2 3 3 7428.4 9506 1264 9414 14902;14903 19449;19450;19451 19451 3 IQASTMAFK Oxidation (M) 1011.5059 0.5059168 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 0 8.5 0.764 1 1 4 49.642 49.642 2;3 0.0067943 12865 TMT1-8 72.607 45.353 630.7 950.62 674.04 592.42 827.32 884.62 596 944 703 593 846 852 6 6 6 6 6 6 118570 9507 1052 9415 14904;14905;14906;14907;14908;14909 19452;19453;19454;19455;19456;19457 19456 199 6 IQASTMAFK Unmodified 995.511 0.51100218 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 8 0.816 1 1 1 53.014 53.014 2 1.1675E-08 14909 TMT1-7 169.09 87.303 1728.1 1957.7 1496 1548.1 1630.6 2500.1 1628 1973 1563 1526 1709 2389 5 5 5 5 5 5 393530 9508 1052 9415 14910;14911;14912 19458;19459;19460;19461;19462 19460 5 IQDALSTVLQYAEDVLSGK Unmodified 2049.063 0.063000772 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 9 0 1 116.36 116.36 3 2.9251E-08 35586 TMT1-8 74.953 60.687 19.242 6.0344 11.102 7.6608 22.411 7.2652 18 7 11 8 22 7 1 1 2 2 2 1 1094.9 9509 60 9416 14913 19463;19464 19463 2 IQDEQTTYVFFDNK Unmodified 1746.8101 0.81008055 2564 Q9BX67-2;Q9BX67 JAM3 Junctional adhesion molecule C yes no 0 0 0 0 0 5 0 1 65.575 65.575 3 8.6814E-11 20110 TMT1-4 126.48 107.75 99.105 120.97 192.81 88.266 158.66 135.12 94 123 189 94 160 131 1 1 1 1 1 1 26063 9510 2564 9417 14914 19465 19465 1 IQDESLINEK Unmodified 1187.6034 0.60338224 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-4 ANKRD44 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B yes no 0 0 0 0 0 2 0 1 52.471 52.471 3 0.033411 15882 TMT1-1 49.5 26.583 54.167 73.498 31.215 68.55 33.735 22.489 51 73 36 65 36 22 1 1 1 1 1 1 2774.1 9511 2192 9418 14915 19466 19466 1 IQDKEGIPPDQQR Unmodified 1522.774 0.77396981 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 1 4.67 0.471 1 2 38.413 38.413 3 8.8036E-06 9623 TMT1-3 109.55 98.918 2239.8 3406.8 2621.1 2021 2677 2924.4 2118 3385 2705 2038 2744 2815 14 14 14 14 14 14 72936 9512 1463 9419 14916;14917;14918 19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481 19470 15 IQDLAIR Unmodified 827.4865 0.48650199 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 6 0 1 50.175 50.175 2 0.0039633 14217 TMT1-5 84.916 2.675 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9513 2306 9420 14919 19482 19482 1 IQDLEHHLGLALNEVQAAK Unmodified 2098.1171 0.11710203 3004 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 68.135 68.135 4 3.9148E-05 20588 TMT1-6 68.567 51.078 77 139.89 104.88 95.921 88.424 190.42 73 138 109 95 95 181 2 2 2 2 2 2 12113 9514 3004 9421 14920;14921 19483;19484 19484 2 IQDLLAEGTITGVIDDR Unmodified 1827.9578 0.95780742 2416 Q96HY6 DDRGK1 DDRGK domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 79.801 79.801 2 0.006831 25688 TMT1-4 62.104 45.472 23.368 21.469 21.725 15.1 0 38.376 22 22 22 15 0 36 1 1 1 1 0 1 2778.7 9515 2416 9422 14922 19485 19485 1 IQDLSLLYQLFSR Unmodified 1594.8719 0.87189295 1731 Q13620-3;Q13620-1;Q13620 CUL4B Cullin-4B yes no 0 0 0 0 0 9 0 2 94.445 94.445 2;3 0.0020727 29145 TMT1-8 60.196 45.777 55.205 97.071 17.118 70.9 69.691 99.281 52 95 22 67 73 95 3 3 2 3 3 3 4915 9516 1731 9423 14923;14924 19486;19487;19488 19487 3 IQDLYTVLHK Unmodified 1228.6816 0.68157298 3009 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 yes yes 0 0 0 0 0 8 0 1 63.286 63.286 3 0.00084242 18818 TMT1-7 93.258 64.3 68.888 86.744 70.522 65.383 77.568 90.529 65 87 73 65 80 87 1 1 1 1 1 1 7924.3 9517 3009 9424 14925 19489 19489 1 IQEAGTEVVK Unmodified 1072.5764 0.57643921 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 4 0 1 45.146 45.146 2 1.4174E-06 12329 TMT1-3 162.36 101.45 666.16 1143.9 682.71 740.69 993.94 1103.7 630 1128 728 732 1019 1062 2 2 2 2 2 2 142400 9518 1075 9425 14926 19490;19491 19490 2 IQEELSALR Unmodified 1057.5768 0.57677356 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 56.181 56.181 2 1.3622E-05 16663 TMT1-3 154.81 75.004 169.16 309.35 161.68 185.32 211.23 241.28 160 304 175 182 218 232 2 2 2 2 2 2 35239 9519 2859 9426 14927 19492;19493 19492 2 IQEENVIPR Unmodified 1096.5877 0.58767259 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 3 0 1 45.948 45.948 2 0.00026259 13631 TMT1-2 143.04 86.491 53.926 104.13 45.672 67.136 63.101 52.565 51 102 51 65 65 51 1 1 1 1 1 1 13006 9520 1101 9427 14928 19494 19494 1 IQEGVESLAGYADIFLR Unmodified 1879.968 0.96797818 491 P05166;P05166-2 PCCB Propionyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 7 0 1 89.086 89.086 3 0.0020066 28724 TMT1-6 58.49 38.383 23.335 28.932 20.953 22.384 21.984 0 22 29 22 22 22 0 1 1 1 1 1 0 4492 9521 491 9428 14929 19495 19495 1 IQEHFNK Unmodified 914.46102 0.46101552 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2;Q9UMR2-3;Q9NUU7-2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 6 0 1 36.57 36.57 3 0.0016505 8808 TMT1-5 116.25 48.258 185.21 252 217.87 140.96 241.17 190.33 175 252 222 145 243 185 1 1 1 1 1 1 24091 9522 2752 9429 14930 19496 19496 1 IQEIIEQLDVTTSEYEK Unmodified 2037.0154 0.015381878 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 86.555 86.555 3;4 1.0928E-09 28238 TMT1-4 104.61 83.959 122.73 150.7 164.86 138.51 133.05 174.23 116 152 167 138 139 167 3 3 3 3 3 3 25863 9523 638 9430 14931;14932 19497;19498;19499 19497 3 IQEIIEQLDVTTSEYEKEK Unmodified 2294.1529 0.15293799 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 5.75 0.829 2 1 1 80.999 80.999 3;4 3.0835E-19 26362 TMT1-5 129.43 114.97 563.1 612.57 419.74 473.15 536.01 572.07 530 618 444 465 552 551 6 6 6 6 6 6 87062 9524 638 9431 14933;14934;14935;14936 19500;19501;19502;19503;19504;19505 19504 6 IQELEDLLAK Unmodified 1170.6496 0.64960415 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 6 0.707 1 2 1 79.421 79.421 2;3 4.2842E-05 25647 TMT1-5 147.74 59.83 647.83 870.37 568.22 572.3 779.41 936.09 611 868 600 568 801 899 3 3 3 3 3 3 174060 9525 816 9432 14937;14938;14939;14940 19506;19507;19508;19509 19507 4 IQEPNTFPAILR Unmodified 1397.7667 0.76669959 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 7 0 1 63.414 63.414 2 2.3256E-07 18835 TMT1-6 126.48 74.744 77.52 86.29 62.847 42.991 72.074 67.233 73 87 65 44 73 65 1 1 1 1 1 1 11514 9526 725 9433 14941 19510 19510 1 IQESHPELR Unmodified 1107.5673 0.5672715 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 3 0 1 31.787 31.787 3 0.00030534 8041 TMT1-2 117.52 102.14 177.19 199.13 166.83 192.89 199.05 220.31 167 201 174 189 206 212 1 1 1 1 1 1 30538 9527 2664 9434 14942 19511 19511 1 IQEVADELQK Unmodified 1171.6085 0.60846762 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 3.5 0.5 1 1 59.078 59.078 3 2.6985E-05 17743 TMT1-3 135.28 115.52 462.41 608.25 574.79 385.81 504.35 575.11 437 610 583 393 518 553 3 3 3 3 3 3 117530 9528 774 9435 14943;14944 19512;19513;19514 19513 3 IQEVGEPSKEEK Unmodified 1371.6882 0.6881745 2464 Q99442 SEC62 Translocation protein SEC62 yes yes 0 0 0 0 1 4 0 1 40.389 40.389 3 0.00010372 10478 TMT1-3 101.6 44.644 161.11 178.66 182.97 175.92 236.72 242.69 152 181 187 175 242 234 1 1 1 1 1 1 19688 9529 2464 9436 14945 19515 19515 1 IQFGTLSDFFDALDK Unmodified 1715.8407 0.8406524 1901 Q16706 MAN2A1 Alpha-mannosidase 2 yes yes 0 0 0 0 0 8 0 1 93.313 93.313 3 0.011418 30276 TMT1-7 51.606 20.379 15.679 60.341 18.746 30.503 4.0577 54.25 15 58 22 29 7 51 1 1 1 1 1 1 1994.9 9530 1901 9437 14946 19516 19516 1 IQFHNVKPEYLDAYNSLTEAVLPK Unmodified 2788.4436 0.44358112 2504 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 0 0 1 8 0 1 70.959 70.959 4 6.8896E-13 21852 TMT1-7 92.336 76.817 68.759 125.24 59.522 66.162 71.009 67.264 65 123 65 65 73 65 1 1 1 1 1 1 14429 9531 2504 9438 14947 19517 19517 1 IQGLTVEQAEAVVR Unmodified 1511.8308 0.83075641 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 60.83 60.83 3 2.2914E-10 18233 TMT1-4 121.45 106.76 37.883 81.628 56.106 35.06 50.174 45.472 36 80 58 36 51 44 1 1 1 1 1 1 9572.3 9532 1763 9439 14948 19518 19518 1 IQHAVQLATEPLEK Unmodified 1575.8621 0.86205654 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 55.815 55.815 3 0.00077085 16465 TMT1-5 73.834 44.858 138.45 231.65 159.62 145.38 191.09 210.95 131 229 167 145 196 203 1 1 1 1 1 1 11858 9533 1185 9440 14949 19519 19519 1 IQHEELNNR Unmodified 1151.5683 0.56833414 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 0 3 0 1 26.577 26.577 3 0.00057937 5996 TMT1-2 102.62 88.323 15.7 36.654 35.372 29.216 19.822 53.8 15 36 36 29 22 51 1 1 1 1 1 1 3551.5 9534 1825 9441 14950 19520 19520 1 IQHILCTGNLCTK Unmodified 1556.7803 0.78031752 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 9 0 1 51.085 51.085 3 8.726E-05 12232 TMT1-8 92.063 62.764 92.116 139.12 89.681 72.174 120.66 136.2 87 138 94 73 123 131 1 1 1 1 1 1 12011 9535 2841 9442 14951 19521 19521 1 IQHPSNVLHFFNAPLEVTEENFFEICDELGVK Unmodified 3771.8243 0.82429741 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 7 0 1 87.856 87.856 5 0.00017881 28191 TMT1-6 44.317 42.675 23.175 44.676 34.517 36.767 27.867 22.657 22 44 36 36 29 22 1 1 1 1 1 1 3526.4 9536 713 9443 14952 19522 19522 1 IQHTVTASVR Unmodified 1110.6146 0.61455605 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 1 1 1 31.159 31.159 2;3 0.0066619 5202 TMT1-8 62.271 28.193 26.42 24.021 47.705 35.34 61.935 37.675 25 25 47 36 62 37 2 2 2 2 2 2 5154.4 9537 471 9444 14953;14954 19523;19524 19524 2 IQIAPDSGGLPER Unmodified 1351.7096 0.70957864 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 4 0 1 52.024 52.024 2 2.4866E-10 15058 TMT1-3 136.38 86.253 37.712 112.45 58.64 106.7 68.852 75.853 36 109 65 102 73 73 1 1 1 1 1 1 15820 9538 2361 9445 14955 19525 19525 1 IQKLESDVSAQMEYCR Unmodified 1955.9081 0.90809681 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 5.5 0.5 1 1 58.11 58.11 3 3.0047E-06 17210 TMT1-4 92.15 71.499 483.93 609.1 564.55 369.37 480.95 882.78 457 612 573 377 505 841 3 3 3 3 3 3 57906 9539 438 9446 14956;14957 19526;19527;19528 19527 3 IQLEQVQEWK Unmodified 1299.6823 0.68230126 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 6 0 1 62.218 62.218 2 0.00031014 18968 TMT1-5 123.8 76.982 91.811 114.53 161.73 90.992 112.21 143.91 87 116 160 94 116 138 1 1 1 1 1 1 15909 9540 1762 9447 14958 19529 19529 1 IQLLDLPGIIEGAK Unmodified 1478.8708 0.87083031 2961 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 0 8 0 1 85.494 85.494 3 0.00016672 27475 TMT1-7 80.632 75.917 70.041 79.339 63.289 43.265 56.063 76.218 66 80 65 44 58 73 2 2 2 2 2 2 8833.5 9541 2961 9448 14959 19530;19531 19531 2 IQLLVFK Unmodified 859.55312 0.55312499 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 9 0 1 71.979 71.979 2 0.020106 20389 TMT1-8 94.887 59.787 153.64 195.48 162.04 137.99 169.46 180.65 145 196 167 138 174 174 2 2 2 2 2 2 14503 9542 2953 9449 14960 19532;19533 19532 2 IQLVEEELDR Unmodified 1242.6456 0.6455814 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 0 2.86 1.25 1 2 2 1 1 65.394 65.394 2;3 1.6828E-79 20900 TMT1-1 265.49 151.79 8791.6 12021 12087 8366.6 12101 11802 8317 12045 12223 8522 12324 11395 14 14 14 14 14 14 3045900 + 9543 519;520;521;592;593;594;595;518;1486;1487;551;552 9450 14961;14962;14963;14964;14965;14966;14967 19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544;19545;19546;19547 19536 14 IQLVEEELDRAQER Unmodified 1726.885 0.88497683 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 3.14 1.25 1 1 2 2 1 62.292 62.292 2;3 5.5365E-35 19964 TMT1-1 203.27 170.98 1808.1 2263.2 1677.3 1526.6 1443.7 2489.5 1705 2268 1747 1513 1529 2374 9 9 9 9 9 9 1481500 + 9544 519;520;521;592;593;594;595;518;1486;1487;551;552 9451 14968;14969;14970;14971;14972;14973;14974 19548;19549;19550;19551;19552;19553;19554;19555;19556 19550 9 IQNDAGVR Unmodified 871.45118 0.45117911 2361;2334 Q96AE4;Q96AE4-2;Q92945 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 no no 0 0 0 0 0 3 0 1 31.023 31.023 2 0.0054197 7765 TMT1-2 118.06 54.772 123.37 121.18 82.344 87.483 143.55 119.56 116 123 87 87 145 116 1 1 1 1 1 1 16736 9545 2361;2334 9452 14975 19557 19557 1 IQNEQLEK Unmodified 1000.5189 0.51892433 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 4 0 1 41.869 41.869 3 0.0020706 11062 TMT1-3 66.692 41.133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9546 668 9453 14976 19558 19558 1 IQNLLPDDSVDSTTR Unmodified 1672.8268 0.82679325 1159 P48595 SERPINB10 Serpin B10 yes yes 0 0 0 0 0 4 0 1 61.244 61.244 3 0.00047108 18688 TMT1-3 74.783 59.907 38.249 35.157 33.944 60.745 33.287 45.954 36 36 36 58 36 44 1 1 1 1 1 1 8963 9547 1159 9454 14977 19559 19559 1 IQNPQILK Unmodified 952.57057 0.57056597 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 49.675 49.675 2 0.002131 13479 TMT1-7 138.33 67.42 130.29 191.34 121.87 173.54 91.891 198.85 123 190 131 167 102 189 1 1 1 1 1 1 14815 9548 1229 9455 14978 19560 19560 1 IQNSGDFYDLYGGEK Unmodified 1704.7631 0.76313036 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 63.111 63.111 2 5.1506E-10 19111 TMT1-4 122.66 97.445 69.612 124.55 97.185 95.912 113.31 105.5 66 123 101 95 116 102 2 2 2 2 2 2 17059 9549 936 9456 14979 19561;19562 19561 2 IQPALQEK Unmodified 925.52328 0.52328142 2466 Q99471;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 0 6 0 1 44.381 44.381 2 0.0069365 11920 TMT1-5 103.8 47.793 130.75 128.93 97.753 94.646 120.69 105.29 123 131 102 94 123 102 1 1 1 1 1 1 13604 9550 2466 9457 14980 19563 19563 1 IQPEILELIK Unmodified 1194.7224 0.72237516 2301 Q92556;Q92556-3;Q92556-2 ELMO1 Engulfment and cell motility protein 1 no no 0 0 0 0 0 7 0 1 77.846 77.846 2 0.00040305 24426 TMT1-6 119.22 73.912 46.248 80.433 93.81 63.723 92.046 97.577 44 80 94 65 94 94 1 1 1 1 1 1 15947 9551 2301 9458 14981 19564 19564 1 IQPGNPNYTLSLK Unmodified 1443.7722 0.7721789 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 8 0 1 58.248 58.248 3 6.665E-05 16848 TMT1-7 96.591 74.393 200.28 185.28 265.51 155.53 187.43 182.27 189 191 263 160 192 176 1 1 1 1 1 1 31762 9552 1467 9459 14982 19565 19565 1 IQPGNPSCTLSLK Unmodified 1413.7286 0.72859953 1637 Q10567-3;Q10567-4 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 8 0 1 54.648 54.648 3 0.0024842 15446 TMT1-7 67.019 35.38 107.85 207.16 93.148 95.246 103.37 182.53 102 203 102 94 109 174 1 1 1 1 1 1 10190 9553 1637 9460 14983 19566 19566 1 IQQEIAVQNPLVSER Unmodified 1722.9264 0.92644771 2405 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 0 5 0 1 59.938 59.938 3 6.0627E-08 17872 TMT1-4 111.78 78.503 53.882 104 53.272 66.712 61.544 98.448 51 102 58 65 65 94 1 1 1 1 1 1 29867 9554 2405 9461 14984 19567 19567 1 IQQELQTAK Unmodified 1057.5768 0.57677356 2572 Q9BY43;Q9BY43-2 CHMP4A Charged multivesicular body protein 4a yes no 0 0 0 0 0 5 0 1 46.163 46.163 3 0.009043 12492 TMT1-4 67.334 35.912 130.7 128.82 104.96 102.97 120.31 105.3 123 131 109 102 123 102 1 1 1 1 1 1 8710.9 9555 2572 9462 14985 19568 19568 1 IQQIAEGEK Unmodified 1014.5346 0.53457439 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 4.5 0.5 1 1 46.624 46.624 2 0.004908 12925 TMT1-3 67.726 18.011 92.313 115.92 76.26 64.627 99.574 120.81 87 116 80 65 102 116 1 1 1 1 1 1 10183 9556 1767 9463 14986;14987 19569;19570 19569 2 IQQIIEGK Unmodified 927.53893 0.53893149 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 7 0 1 56.705 56.705 2 0.032144 16148 TMT1-6 80.239 31.735 146.07 235.78 136.54 122.7 191.51 229.06 138 233 145 123 196 220 1 1 1 1 1 1 12049 9557 220 9464 14988 19571 19571 1 IQQLTALGAAQATAK Unmodified 1483.8358 0.83584179 2466 Q99471;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 0 9 0 1 60.459 60.459 3 6.1535E-08 15886 TMT1-8 106.35 85.973 84.517 139.39 104.22 110.53 127.28 136.01 80 138 109 109 131 131 1 1 1 1 1 1 19897 9558 2466 9465 14989 19572 19572 1 IQQNTFTR Unmodified 1006.5196 0.51959303 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 7.5 1.12 1 1 1 1 37.55 37.55 2 2.234E-06 9215 TMT1-5 167.04 118.25 1049.1 1500.3 1305.1 1086.8 1193.7 1434.9 992 1497 1339 1086 1236 1378 6 6 6 6 6 6 491520 9559 270;831;1771 9466 14990;14991;14992;14993 19573;19574;19575;19576;19577;19578 19574 6 IQQQAETTSEELGAVTVK Unmodified 1930.9848 0.98475045 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 4 0 2 59.334 59.334 2;4 1.9035E-10 17947 TMT1-3 115.91 93.377 99.885 91.837 86.34 64.263 145.13 104.59 94 94 88 66 145 102 2 2 2 2 2 2 28885 9560 2066 9467 14994;14995 19579;19580 19579 2 IQQYFPSNYVEDISTADFEELEK Unmodified 2764.2756 0.27557232 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 5 0 1 85.454 85.454 3 2.7244E-05 27882 TMT1-4 64.954 50.546 15.934 14.642 14.58 15.526 0 15.99 15 15 15 15 0 15 1 1 1 1 0 1 7379.3 9561 750 9468 14996 19581 19581 1 IQRPPEDSIQPYEK Unmodified 1698.8577 0.85769944 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 1 5 0 2 44.69 44.69 3;4 0.00073338 11863 TMT1-4 77.146 45.084 337.35 490.64 413.48 317.59 341.88 432.63 319 489 424 319 355 415 3 3 3 3 3 3 44204 9562 1910 9469 14997;14998 19582;19583;19584 19584 3 IQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVR Unmodified 3552.8464 0.84641306 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 9 0 1 110.49 110.49 4 1.5283E-10 34271 TMT1-8 61.228 53.198 11.768 13.944 0 4.3045 3.5871 15.888 11 14 0 4 4 15 2 2 0 1 1 2 4323.9 9563 1118 9470 14999 19585;19586;19587 19586 3 IQSLGDSK Unmodified 846.4447 0.44469675 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 43.712 43.712 2 0.0054178 11658 TMT1-5 74.165 32.736 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9564 1184 9471 15000 19588 19588 1 IQSTPVK Unmodified 771.44905 0.44905385 1444 P62820;P62820-2;P62820-3 RAB1A Ras-related protein Rab-1A yes no 0 0 0 0 0 7 0 1 38.972 38.972 2 0.0097947 9125 TMT1-6 110.81 77.687 145.87 211.47 191.58 158.6 258.62 206.89 138 211 196 160 261 201 1 1 1 1 1 1 35939 9565 1444 9472 15001 19589 19589 1 IQTFLLLDEISQR Unmodified 1574.8668 0.86680757 148 O15439-2;O15439;O15439-4;O15439-3 ABCC4 Multidrug resistance-associated protein 4 yes no 0 0 0 0 0 8 0 1 81.903 81.903 3 0.00015621 26106 TMT1-7 68.972 44.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9566 148 9473 15002 19590 19590 1 IQTLSAIDTIK Unmodified 1201.6918 0.69180331 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 7.5 0.5 1 1 63.697 63.697 2;3 6.228E-07 18993 TMT1-7 147.63 90.9 695.27 1089.6 885.44 753.21 790.06 840.92 658 1082 913 751 816 810 3 3 3 3 3 3 228570 9567 1934 9474 15003;15004 19591;19592;19593 19593 3 IQTQPGYANTLR Unmodified 1360.7099 0.709913 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 43.008 43.008 2 1.6819E-23 11291 TMT1-4 168.71 115.85 122.77 198.31 116.82 108.4 200.93 187.21 116 196 124 109 203 181 2 2 2 2 2 2 60430 9568 1537 9475 15005;15006 19594;19595;19596 19594 3 IQTYLQSTKPIIDLYEEMGK Unmodified 2369.2188 0.21884949 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 1 8 0 1 80.559 80.559 4 0.00050628 25529 TMT1-7 57.482 43.173 122.74 166.93 148.36 122.69 154.72 173.61 116 167 152 123 159 167 2 2 2 2 2 2 13412 9569 953 9476 15007 19597;19598 19598 2 IQVAQEK Unmodified 814.45487 0.45486751 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 5 0 1 39.701 39.701 2 0.010481 9936 TMT1-4 107.9 60.047 130.84 129.2 81.469 95.489 127.46 150.93 123 131 87 94 131 145 1 1 1 1 1 1 8055.6 9570 325 9477 15008 19599 19599 1 IQVDYDGHCK Unmodified 1233.5448 0.5448215 1648 Q12841;Q12841-2 FSTL1 Follistatin-related protein 1 yes no 0 0 0 0 0 5 0 1 40.783 40.783 3 0.0056625 10370 TMT1-4 71.159 52.379 85.011 61.977 86.753 72.6 107.34 97.141 80 65 87 73 109 94 1 1 1 1 1 1 7215 9571 1648 9478 15009 19600 19600 1 IQVHPYK Unmodified 883.49159 0.49158736 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 38.649 38.649 3 0.018565 9057 TMT1-6 69.344 35.266 108.44 99.794 85.079 56.586 92.374 97.568 102 102 87 58 94 94 1 1 1 1 1 1 6380.6 9572 2717 9479 15010 19601 19601 1 IQVHYYEDGNVQLVSHK Unmodified 2028.0065 0.0064889465 1277;1143 P52907;P47755 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 0 6 0 1 48.404 48.404 4 3.9103E-19 13501 TMT1-5 136.34 112.54 333.63 443.96 356.58 322.37 442.69 414.83 315 444 369 322 451 401 1 1 1 1 1 1 79903 9573 1277;1143 9480 15011 19602 19602 1 IQVIDISMILAEAIR Unmodified 1683.9593 0.95932774 661;1360 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 9 0 1 98.474 98.474 2 0.0012318 30493 TMT1-8 68.42 44.188 23.175 52.229 28.244 21.683 36.131 45.873 22 51 30 22 37 44 2 2 2 2 2 2 4112 9574 661;1360 9481 15012 19603;19604 19604 2 IQVLQQQADDAEER Unmodified 1641.7958 0.79582747 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 3 0.707 1 2 1 51.199 51.199 2;3 4.0768E-95 15694 TMT1-2 259.47 215.96 925.05 1094.1 1216.7 839.1 1101.3 1164.6 874 1106 1224 853 1128 1122 8 8 8 8 8 8 556510 9575 519;520;521 9482 15013;15014;15015;15016 19605;19606;19607;19608;19609;19610;19611;19612 19609 8 IQVLQQQADDAEERAER Unmodified 1997.9766 0.97664538 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 2.5 0.5 1 1 51.008 51.008 3 8.8495E-30 15561 TMT1-2 168.69 134.38 207.92 253.1 187.61 184.66 106.06 306.11 196 254 196 181 116 290 3 3 3 3 2 3 53834 9576 519;520;521 9483 15017;15018 19613;19614;19615 19614 3 IQVLVEPDHFK Unmodified 1323.7187 0.71868677 768 P17931 LGALS3 Galectin-3 yes yes 0 0 0 0 0 6.33 0.471 2 1 57.894 57.894 3 4.3619E-06 17234 TMT1-5 94.191 62.257 130.23 183.61 138.98 139.93 139.26 174.05 123 183 145 138 145 167 1 1 1 1 1 1 10197 9577 768 9484 15019;15020;15021 19616;19617;19618 19617 3 IQVTPPGFQLVFLPFADDK Unmodified 2131.1354 0.13537785 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 9 0 1 94.013 94.013 3 9.6153E-05 28926 TMT1-8 57.496 38.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9578 675 9485 15022 19619 19619 1 IQVTPPGFQLVFLPFADDKR Unmodified 2287.2365 0.23648888 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 9 0 1 84.51 84.51 4 0.019916 25254 TMT1-8 35.703 18.002 30.566 58.938 42.648 28.496 35.063 37.375 29 58 44 29 36 36 1 1 1 1 1 1 24677 9579 675 9486 15023 19620 19620 1 IQVTTDLYQVLAAK Unmodified 1561.8716 0.87155859 166 O43306-2;O43306 ADCY6 Adenylate cyclase type 6 yes no 0 0 0 0 0 8 0 1 78.062 78.062 3 0.0031124 24590 TMT1-7 63.709 46.427 30.329 50.723 89.458 33.229 41.866 76.623 29 51 87 36 44 73 1 1 1 1 1 1 7595.2 9580 166 9487 15024 19621 19621 1 IQVWHEEHR Unmodified 1232.6051 0.60505399 894 P26038 MSN Moesin yes yes 0 0 0 0 0 5 0 1 33.11 33.11 3 0.0001336 7275 TMT1-4 130.79 112.62 384.31 384 365.51 439.77 564.96 413.48 362 391 379 432 573 403 2 2 2 2 2 2 42787 9581 894 9488 15025 19622;19623 19622 2 IQYQLVDISQDNALR Unmodified 1774.9214 0.92136233 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 0 5.5 0.5 1 1 65.964 65.964 3 4.9972E-23 20405 TMT1-5 176.56 142.37 254.14 324.83 292.82 198.63 307.96 300.35 240 326 298 203 313 290 4 4 4 4 4 4 114840 9582 2626 9489 15026;15027 19624;19625;19626;19627 19626 4 IQYQLVDISQDNALRDEMR Unmodified 2306.1325 0.1324941 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 1 4 1.67 1 2 1 1 64.395 64.395 3;4 1.5281E-44 19520 TMT1-4 182.49 148.62 604.22 1113.3 658.55 602.52 746.15 1133.2 572 1095 698 600 777 1083 6 6 6 6 6 6 444320 9583 2626 9490 15028;15029;15030;15031;15032 19628;19629;19630;19631;19632;19633;19634 19632 7 IRDEMVATEQER Unmodified 1475.7038 0.70384134 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 1 2 0 1 37.624 37.624 3 8.5557E-05 10025 TMT1-1 82.925 70.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9584 748 9491 15033 19635 19635 1 IREDLPNLESSEETEQINK Unmodified 2243.0917 0.091734718 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 1 2.5 0.5 1 1 54.506 54.506 3;4 3.6513E-14 17009 TMT1-2 116.13 113.41 85.104 70.868 63.723 43.229 56.614 60.212 80 73 65 44 58 58 1 1 1 1 1 1 14754 9585 2444 9492 15034;15035 19636;19637 19637 2 IREESGAR Unmodified 916.47264 0.47264284 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 1 2 0 1 20.65 20.65 3 0.00080713 3565 TMT1-1 111.82 30.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9586 1843 9493 15036 19638 19638 1 IREEYPDR Unmodified 1076.5251 0.52507234 2650;537;1493;1932 P07437;P68371;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB;TUBB4B;TUBB8;TUBB1 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain no no 0 0 0 0 1 4.25 2.49 1 1 2 1 1 1 1 30.255 30.255 3 0.00085722 7161 TMT1-1 136.57 76.13 4337.4 5881 4702.4 3513.4 4595.6 6737.1 4096 5876 4837 3550 4769 6443 14 14 14 14 14 14 947400 9587 537;1493;1932;2650 9494 15037;15038;15039;15040;15041;15042;15043;15044 19639;19640;19641;19642;19643;19644;19645;19646;19647;19648;19649;19650;19651;19652 19640 14 IRELESQISELQEDLESER Unmodified 2302.1288 0.12884851 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3.33 0.471 2 1 78.299 78.299 3;4 2.3485E-30 26325 TMT1-2 146.13 122.8 61.1 103.65 108.99 95.966 108.03 106.72 58 103 110 95 111 103 5 6 5 5 6 6 11004 9588 1019 9495 15045;15046;15047 19653;19654;19655;19656;19657;19658 19653 6 IRLDETDDPDDYGDR Unmodified 1793.7704 0.77040058 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 2 0 1 46.835 46.835 3 1.329E-05 13661 TMT1-1 96.773 77.45 61.516 95.199 40.012 35.33 86.828 74.274 58 94 44 36 87 72 1 1 1 1 1 1 16545 9589 536 9496 15048 19659 19659 1 IRPFFPQQ Unmodified 1031.5553 0.55525025 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 9 0 1 55.687 55.687 2 0.00080389 14009 TMT1-8 157.86 130.9 2251.9 2690.8 1928.9 2102.3 2464.6 3242.8 2122 2702 2029 2071 2555 3108 3 3 3 3 3 3 488880 9590 438 9497 15049 19660;19661;19662 19661 3 IRPTAVTLEHVPK Unmodified 1459.8511 0.85109792 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 1 8 0 1 43.05 43.05 4 0.015309 10838 TMT1-7 53.377 27.992 858.44 1413.6 959.05 1001.9 1163.1 1097.8 812 1398 1010 989 1192 1061 1 1 1 1 1 1 25152 9591 2859 9498 15050 19663 19663 1 IRTQMFKDEIR Phospho (STY) 1515.7269 0.72689877 2627 Q9H2F9 CCDC68 Coiled-coil domain-containing protein 68 yes yes 0 0 0 1 2 9 0 1 44.533 44.533 3 0.031934 9858 TMT1-8 43.492 11.365 30.354 97.203 45.815 75.909 61.122 98.46 29 94 51 73 65 94 1 1 1 1 1 1 27500 9592 2627 9499 15051 19664 19664 20 1 ISAESPTGLPSHK Unmodified 1322.683 0.68302954 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 6 0 1 41.676 41.676 3 5.061E-11 10844 TMT1-5 135.91 103.39 617.63 954.01 524.22 624.86 506.91 851.13 583 944 566 609 540 812 2 2 2 2 2 2 38922 9593 2378 9500 15052 19665;19666 19666 2 ISAFGYLECSAK Unmodified 1344.6384 0.63838754 556 P08134 RHOC Rho-related GTP-binding protein RhoC yes yes 0 0 0 0 0 8 0 1 64.626 64.626 3 7.9653E-06 19367 TMT1-7 90.614 64.016 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9594 556 9501 15053 19667 19667 1 ISALTALR Unmodified 843.5178 0.51780212 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 9 0 1 54.896 54.896 2 0.0085817 13640 TMT1-8 93.561 37.47 183.37 361.11 253.86 327.93 298.03 385.92 174 355 269 319 312 370 2 2 2 2 2 2 25543 9595 699 9502 15054 19668;19669 19668 2 ISANSTDPVK Unmodified 1030.5295 0.52948901 669 P12318-2;P12318;P31995-2;P31995 FCGR2A;FCGR2C Low affinity immunoglobulin gamma Fc region receptor II-a;Low affinity immunoglobulin gamma Fc region receptor II-c yes no 0 0 0 0 0 5 0 1 41.24 41.24 3 0.0066718 10518 TMT1-4 68.49 39.143 99.393 169.26 103.41 86.829 111.6 167.38 94 167 109 87 116 160 1 1 1 1 1 1 11082 9596 669 9503 15055 19670 19670 1 ISAPGGEIEEEPAGAVK Unmodified 1652.8257 0.82573061 311 O75923;O75923-14;O75923-4;O75923-10;O75923-2;O75923-8 DYSF Dysferlin yes no 0 0 0 0 0 5 0 2 51.206 51.206 3;4 0.0015483 14379 TMT1-4 60.918 29.279 307.53 387.35 283.88 333.28 383.36 452.77 290 388 299 327 396 435 2 2 2 2 2 2 69532 9597 311 9504 15056;15057 19671;19672 19671 2 ISAPNVDFNLEGPK Unmodified 1499.762 0.76200815 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 64.788 64.788 2 1.3905E-16 19982 TMT1-5 136.3 108.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9598 1632 9505 15058 19673 19673 1 ISAQDAK Unmodified 731.38137 0.38136821 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 5 0 1 35.286 35.286 2 0.042562 8245 TMT1-4 85.064 9.2097 45.66 34.368 51.302 35.637 34.735 37.385 43 36 51 36 36 36 1 1 1 1 1 1 20284 9599 952 9506 15059 19674 19674 1 ISATSIFFESMPYK Unmodified 1619.7905 0.79053108 1006;1005 P34897-3;P34897;P34897-2;P34896-4;P34896-3;P34896-2;P34896 SHMT2;SHMT1 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic no no 0 0 0 0 0 9 0 1 77.904 77.904 3 0.028467 22794 TMT1-8 41.621 15.186 37.889 50.347 81.489 41.736 79.718 59.553 36 51 80 44 80 58 1 1 1 1 1 1 6662.3 9600 1006;1005 9507 15060 19675 19675 1 ISCEDEQAR Unmodified 1106.4662 0.46623683 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 2 0 1 30.046 30.046 2 0.0014665 7025 TMT1-1 119.07 78.043 45.648 58.079 33.218 45.32 42.116 53.164 43 58 36 44 44 51 1 1 1 1 1 1 5367.7 9601 1592 9508 15061 19676 19676 1 ISDALLQLTCVSCVR Unmodified 1733.8804 0.8804255 1916 Q27J81;Q27J81-2;Q27J81-3 INF2 Inverted formin-2 yes no 0 0 0 0 0 8.5 0.5 1 1 76.251 76.251 3 0.0001824 22048 TMT1-8 68.481 36.205 53.906 56.583 89.35 49.379 55.232 92.232 51 58 88 51 58 88 2 2 2 2 2 2 23858 9602 1916 9509 15062;15063 19677;19678 19678 2 ISDEDWDIIHR Unmodified 1397.6575 0.65754307 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 3 0 1 56.452 56.452 3 3.0724E-07 17758 TMT1-2 138.25 101.07 46.795 50.655 27.133 21.764 35.373 37.367 44 51 29 22 36 36 1 1 1 1 1 1 23833 9603 1250 9510 15064 19679 19679 1 ISDFGLSK Unmodified 865.45453 0.45453316 1115;1114 P43403;P43403-3;P43403-2;Q8NFD2;P43405-2;P43405 ZAP70;ANKK1;SYK Tyrosine-protein kinase ZAP-70;Ankyrin repeat and protein kinase domain-containing protein 1;Tyrosine-protein kinase SYK no no 0 0 0 0 0 7 0 1 58.105 58.105 2 0.0099874 16800 TMT1-6 99.802 32.77 84.26 185.08 108.75 117.51 148.43 150.33 80 181 116 116 152 145 1 1 1 1 1 1 68257 9604 1114;1115 9511 15065 19680 19680 1 ISDIQSQLEK Unmodified 1159.6085 0.60846762 2764 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 0 5 0 1 55.863 55.863 3 1.0408E-05 16313 TMT1-4 112.13 80.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9605 2764 9512 15066 19681 19681 1 ISDLGLACDFSK Unmodified 1324.6333 0.63330216 881 P25098;P35626 ADRBK1;ADRBK2 Beta-adrenergic receptor kinase 1;Beta-adrenergic receptor kinase 2 yes no 0 0 0 0 0 6 0 1 67.431 67.431 2 0.017982 21020 TMT1-5 67.456 33.59 46.399 57.107 88.286 49.116 72.562 44.833 44 58 87 51 73 44 1 1 1 1 1 1 7720.2 9606 881 9513 15067 19682 19682 1 ISDSEGFK Unmodified 881.41306 0.41306227 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 4.5 0.5 1 1 45.726 45.726 2 0.017098 12578 TMT1-3 91.069 46.674 355.8 589.26 294.94 317.6 426.44 498.45 336 581 320 314 438 479 2 2 2 2 2 2 54129 9607 857 9514 15068;15069 19683;19684 19683 2 ISDSVLVDIKDTEPLIQTAK Unmodified 2184.1889 0.18892957 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 1 6 0 2 74.482 74.482 3;4 1.2687E-30 23777 TMT1-5 147.06 132.13 399.43 550.69 389.78 373.08 430.45 581.48 377 549 408 370 447 557 3 3 3 3 3 3 61025 9608 1161 9515 15070;15071 19685;19686;19687 19687 3 ISEECIAQWK Unmodified 1262.5965 0.59652272 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 6 0 1 59.546 59.546 3 0.00030877 17908 TMT1-5 102.06 49.159 138.73 189.27 147.62 107.56 147.57 188.74 131 189 152 109 152 181 1 1 1 1 1 1 19771 9609 1297 9516 15072 19688 19688 1 ISEEDELDTK Unmodified 1177.535 0.5350279 1831 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 0 2 0 1 48.036 48.036 3 0.00085224 14089 TMT1-1 93.096 79.668 108.37 114.72 83.827 64.604 76.797 114 102 116 87 65 80 109 1 1 1 1 1 1 18011 9610 1831 9517 15073 19689 19689 1 ISEIEDAAFLAR Unmodified 1333.6878 0.68778057 280;330 O75477;O94905 ERLIN1;ERLIN2 Erlin-1;Erlin-2 no no 0 0 0 0 0 4.33 0.471 2 1 68.213 68.213 2;3 6.2028E-14 21412 TMT1-3 168.22 123.87 107.86 168.33 124.46 149.04 107.68 198.4 102 167 131 145 116 189 2 2 2 2 2 2 28478 9611 280;330 9518 15074;15075;15076 19690;19691;19692 19690 3 ISEIIDSR Unmodified 931.49746 0.4974606 921 P27986;P27986-4;P27986-5;P27986-3;P27986-2 PIK3R1 Phosphatidylinositol 3-kinase regulatory subunit alpha yes no 0 0 0 0 0 4 0 1 52.106 52.106 2 0.0062839 15120 TMT1-3 107.29 40.496 84.435 146.72 111.73 102.29 134.73 143.26 80 145 116 102 138 138 1 1 1 1 1 1 19730 9612 921 9519 15077 19693 19693 1 ISEILLDHGAPIQAK Unmodified 1603.8934 0.89335667 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 6 0 1 61.37 61.37 3 9.872E-05 18646 TMT1-5 80.534 60.153 77.111 116.45 105.93 103.9 67.404 121.73 73 116 109 102 73 116 1 1 1 1 1 1 11504 9613 736 9520 15078 19694 19694 1 ISEKEEVTTR Unmodified 1190.6143 0.61428128 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 1 4 0 1 34.981 34.981 3 0.010193 8319 TMT1-3 71.085 46.04 219.25 711.3 419.47 482.18 463.36 634.91 210 689 448 472 485 608 1 1 1 1 1 1 52335 9614 1577 9521 15079 19695 19695 1 ISELDAFLK Unmodified 1034.5648 0.56481189 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 6 0 1 73.024 73.024 2 0.00035885 23220 TMT1-5 105.52 52.804 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9615 1603 9522 15080 19696 19696 1 ISELDAFLKEPALNEANLSNLK Unmodified 2428.285 0.28495522 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 1 7 0 1 79 79 4 4.1802E-13 24860 TMT1-6 101.94 80.34 161.24 217.89 127.44 179.45 166.75 204.18 152 217 138 174 174 196 2 2 2 2 2 2 25634 9616 1603 9523 15081 19697;19698 19697 2 ISELTSELTDER Unmodified 1391.678 0.67800374 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 2.5 0.5 1 1 62.855 62.855 2 1.9973E-07 19997 TMT1-1 127.03 68.602 85.157 69.938 55.501 59.03 56.129 83.678 80 72 58 58 59 80 2 2 2 2 2 2 12164 9617 2306 9524 15082;15083 19699;19700 19699 2 ISEQFTAMFR Unmodified 1228.591 0.59104341 537;1493;1713 P07437;P68371;P04350;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 0 0 0 0 0 8.5 0.5 1 1 66.654 66.654 2 4.4687E-10 20236 TMT1-7 178.32 123.61 1372.7 1979.2 1519.5 1104.4 1552.6 2167.6 1297 1971 1566 1120 1604 2075 5 5 5 5 5 5 446850 9618 537;1493;1713 9525 15084;15085 19701;19702;19703;19704;19705 19702 5 ISEQIVIGTPGTVLDWCSK Unmodified 2102.0718 0.07179132 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2;Q9UMR2-3;Q9NUU7-2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 7 0 1 77.37 77.37 4 5.8835E-05 24281 TMT1-6 66.325 48.836 38.277 27.682 35.482 36.28 50.667 29.468 36 29 36 36 51 29 1 1 1 1 1 1 5057 9619 2752 9526 15086 19706 19706 1 ISEQSDAK Unmodified 876.41888 0.41887593 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 33.45 33.45 2;3 0.0021826 8761 TMT1-2 138.06 39.645 484.1 304.85 433.19 400.19 478.87 323.19 455 324 436 398 486 316 2 2 2 2 2 2 26520 9620 888 9527 15087;15088 19707;19708 19707 2 ISETTAR Unmodified 776.40283 0.40283194 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 2.5 0.5 1 1 27.815 27.815 2 0.0012883 6255 TMT1-1 102.77 51.317 99.679 99.899 114.13 109.62 144.1 73.706 94 102 116 109 145 73 1 1 1 1 1 1 9734.9 9621 765 9528 15089;15090 19709;19710 19709 2 ISEVLDAGTVDPLTK Unmodified 1556.8298 0.82975336 1221 P50452;P50452-2 SERPINB8 Serpin B8 yes no 0 0 0 0 0 5 0 1 71.125 71.125 3 0.00084009 22272 TMT1-4 70.281 59.01 61.312 110.82 61.103 50.93 62.27 98.427 58 109 65 51 65 94 1 1 1 1 1 1 13950 9622 1221 9529 15091 19711 19711 1 ISFDEFIK Unmodified 997.51205 0.51204804 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 4.67 2.62 1 1 1 70.852 70.852 2 0.0033234 21714 TMT1-6 132.08 45.612 3636 6508.9 3575.6 3534.5 4430.5 5761.1 3439 6404 3828 3505 4580 5523 5 5 5 5 5 5 651630 9623 690 9530 15092;15093;15094 19712;19713;19714;19715;19716 19716 5 ISFDEFVYIFQEVK Unmodified 1762.8818 0.88178893 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 8 0 1 96.907 96.907 3 2.1266E-05 31582 TMT1-7 92.935 72.828 11.577 14.754 25.468 14.336 28.788 25.829 11 15 25 15 29 25 1 1 1 1 1 1 4373.9 9624 691 9531 15095 19717 19717 1 ISFEEFCAVVGGLDIHKK Unmodified 2048.0401 0.040097261 1470 P63098 PPP3R1 Calcineurin subunit B type 1 yes yes 0 0 0 0 1 8 0 1 72.606 72.606 4 3.5084E-07 22468 TMT1-7 91.371 74.877 160.93 347.8 249.88 267.73 199.06 241.63 153 341 262 262 210 232 2 2 2 2 2 2 24674 9625 1470 9532 15096 19718;19719 19718 2 ISFLENNLEQLTK Unmodified 1547.8195 0.81952302 998 P33176;O60282;Q12840;O60282-2 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 7 0 1 77.214 77.214 3 1.3741E-08 24181 TMT1-6 124.38 59.334 61.374 87.25 70.548 64.958 100.07 105.88 58 87 73 65 102 102 1 1 1 1 1 1 16297 9626 998 9533 15097 19720 19720 1 ISFPAIQAAPSFSNSFPQIFR Unmodified 2324.1954 0.19535235 860 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 0 9 0 2 86.899 86.899 3;4 1.4318E-15 26197 TMT1-8 103.2 84.498 73.161 66.971 90.43 57.533 83.179 59.454 69 69 90 59 84 58 3 3 3 3 3 3 25282 9627 860 9534 15098;15099 19721;19722;19723 19721 3 ISGETIFVTAPHEATAGIIGVNR Unmodified 2352.2438 0.24375911 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7 0 1 64.248 64.248 3 5.6647E-24 19120 TMT1-6 128.66 118.53 76.284 102.1 76.77 73.609 85.325 66.855 72 102 80 73 87 65 2 2 2 2 2 2 48794 9628 1540 9535 15100 19724;19725 19724 2 ISGLGLTPEQK Unmodified 1141.6343 0.63428844 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 7 0 1 55.558 55.558 2 6.5254E-06 15716 TMT1-6 127.42 52.13 77.543 102.54 45.268 75.656 76.289 114.02 73 102 51 73 80 109 1 1 1 1 1 1 14006 9629 373 9536 15101 19726 19726 1 ISGLIYEETR Unmodified 1179.6136 0.61355299 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 0 6 2.45 1 1 1 1 1 2 1 57.235 57.235 2 1.6331E-14 16681 TMT1-4 189.18 139.14 6213.1 7580.9 6132.1 9189.1 11995 10615 5860 7615 6495 8948 12220 10279 13 13 13 13 13 13 3946000 9630 1443 9537 15102;15103;15104;15105;15106;15107;15108;15109 19727;19728;19729;19730;19731;19732;19733;19734;19735;19736;19737;19738;19739;19740;19741 19731 15 ISGNLDSPEGGFDAIMQVAVCGSLIGWR Unmodified 2948.4161 0.41606252 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 8 0 1 99.035 99.035 3 0.00036886 32427 TMT1-7 49.088 42.993 0 7.3317 6.9578 3.9573 0 0 0 7 7 4 0 0 0 1 1 1 0 0 768.03 9631 500 9538 15110 19742 19742 1 ISGSILNELIGLVR Unmodified 1482.877 0.87697832 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 1 92.169 92.169 2 3.1411E-13 28252 TMT1-8 137.58 90.847 76.133 77.934 122.77 117.93 81.968 105.33 72 80 123 116 87 101 2 2 2 2 2 2 21626 9632 2116 9539 15111 19743;19744 19744 2 ISGTVNIR Unmodified 858.49232 0.49231565 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 41.591 41.591 2 0.0071919 10203 TMT1-6 69.905 11.123 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9633 902 9540 15112 19745 19745 1 ISHLSGSGSGDER Unmodified 1300.6008 0.60075648 2455 Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 0 0 4 0 1 27.897 27.897 3 0.034529 5550 TMT1-3 45.115 22.237 15.855 21.975 21.764 14.407 36.758 37.327 15 22 22 15 37 36 1 1 1 1 1 1 1727.1 9634 2455 9541 15113 19746 19746 1 ISHLVLPVQPVSSIEEQGCLF Unmodified 2351.2195 0.21951819 2225 Q8NFQ8 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 0 0 0 0 0 7 0 1 81.351 81.351 3 0.0038305 25853 TMT1-6 46.663 40.527 0 22.898 30.48 13.606 51.71 29.438 0 22 30 15 51 29 0 1 1 1 1 1 5463.4 9635 2225 9542 15114 19747 19747 1 ISIEGNIAAGK Unmodified 1071.5924 0.59242362 916 P27707 DCK Deoxycytidine kinase yes yes 0 0 0 0 0 6 0 1 53.369 53.369 2 0.00014961 15484 TMT1-5 110.84 65.858 108.25 121.95 97.222 118.51 132.11 197.7 102 123 102 116 138 189 1 1 1 1 1 1 10883 9636 916 9543 15115 19748 19748 1 ISIEMHGTLEDQLSHLR Unmodified 1977.9942 0.9942097 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 6.5 1.12 1 1 1 1 59.702 59.702 4 6.8647E-27 17987 TMT1-5 162.79 158.68 445.8 634.72 458.4 463.01 487.44 659.8 421 632 480 457 508 632 5 5 5 5 5 5 112130 9637 672 9544 15116;15117;15118;15119 19749;19750;19751;19752;19753 19751 5 ISIEMNGTLEDQLSHLK Unmodified 1926.9721 0.97207728 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 6 0 1 69.887 69.887 3 8.2226E-08 22006 TMT1-5 100.77 82.174 30.442 66.148 57.41 27.468 42.937 53.141 29 65 58 29 44 51 1 1 1 1 1 1 9840.5 9638 195 9545 15120 19754 19754 1 ISIGNVVK Unmodified 828.5069 0.50690308 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 3.56 1 1 1 54.225 54.225 2 0.0016659 13347 TMT1-8 140.09 27.72 10307 12217 11916 8296.1 12265 15378 9729 12323 12080 8451 12595 14754 6 6 6 6 6 6 2075800 9639 3010 9546 15121;15122;15123 19755;19756;19757;19758;19759;19760 19760 6 ISIPDVDLDLKGPK Unmodified 1508.845 0.84500949 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 7 0 1 67.313 67.313 3 0.0013659 20386 TMT1-6 73.91 53.901 84.21 193.58 109.95 79.195 89.978 137.08 80 189 116 80 94 131 1 1 1 1 1 1 14726 9640 1632 9547 15124 19761 19761 1 ISIPDVGLHLK Unmodified 1190.7023 0.70230842 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 64.072 64.072 3 0.012693 19233 TMT1-7 59.198 34.855 46.553 73.727 48.209 51.955 48.627 67.902 44 73 51 51 51 65 1 1 1 1 1 1 48335 9641 1632 9548 15125 19762 19762 1 ISIPVDISDSDMMLNIINSSITTK Unmodified 2606.3183 0.31830554 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 8 0 1 96.554 96.554 3 2.5046E-10 31511 TMT1-7 76.049 66.562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9642 1178 9549 15126 19763 19763 1 ISKPAPYWEGTAVIDGEFK Unmodified 2107.0626 0.062606842 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 1 7 0 1 66.164 66.164 3 1.1833E-09 19900 TMT1-6 99.059 75.73 139.18 111.75 137.07 108.57 127.37 136.01 131 116 138 109 131 131 1 1 1 1 1 1 28591 9643 1679 9550 15127 19764 19764 1 ISLADIAQK Unmodified 957.5495 0.54949617 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 7 0 1 61.297 61.297 3 0.001688 18006 TMT1-6 90.709 29.799 91.865 153.53 119.6 85.532 129.23 112.51 87 152 123 87 131 109 1 1 1 1 1 1 8877.1 9644 162 9551 15128 19765 19765 1 ISLAIPNLGNTSQQEYK Unmodified 1874.9738 0.97379183 1811 Q15018 FAM175B BRISC complex subunit Abro1 yes yes 0 0 0 0 0 8 0 1 68.349 68.349 3 0.00036424 20835 TMT1-7 54.368 33.987 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9645 1811 9552 15129 19766 19766 1 ISLEDIQAFEK Unmodified 1291.666 0.66598249 2286 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 0 5 0 1 71.636 71.636 3 0.006661 22520 TMT1-4 65.395 41.052 23.224 44.812 26.175 53.816 19.497 30.358 22 44 29 51 22 29 1 1 1 1 1 1 3767 9646 2286 9553 15130 19767 19767 1 ISLGLPVGAVINCADNTGAK Unmodified 1969.0303 0.030260856 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 8 0 1 73.432 73.432 3 6.8803E-19 22812 TMT1-7 129.03 110.89 37.95 58.071 64.724 43.328 48.218 91.366 36 58 65 44 51 87 1 1 1 1 1 1 16456 9647 1446 9554 15131 19768 19768 1 ISLLTLDK Unmodified 901.54843 0.54843354 3077 yes no 0 0 0 0 0 7.5 0.5 1 1 67.002 67.002 2 0.0048681 20227 TMT1-7 121.99 19.275 962.27 2101.7 1319.7 541.6 1541.3 540.19 914 2057 1363 594 1515 548 3 3 3 3 3 3 224220 + 9648 3077 9555 15132;15133 19769;19770;19771 19770 3 ISLNTLTLNVK Unmodified 1214.7234 0.72343779 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 9 0 1 68.191 68.191 3 4.7907E-11 18963 TMT1-8 149.33 109.06 92.372 84.791 92.614 79.484 129.51 112.5 87 87 94 80 131 109 1 1 1 1 1 1 11870 9649 318 9556 15134 19772 19772 1 ISLPESLK Unmodified 885.51713 0.51713341 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 7 0 1 58.831 58.831 2 0.0079201 17003 TMT1-6 102.51 18.016 153.74 210.87 131.75 92.805 110.81 182.32 145 210 138 94 116 174 1 1 1 1 1 1 11653 9650 409 9557 15135 19773 19773 1 ISLPLPNFSSLNLR Unmodified 1569.8879 0.88787736 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 6.33 3.77 1 2 81.255 81.255 2;3 1.8281E-12 23993 TMT1-8 126.1 104.7 710.72 940.38 772.67 760.63 821.18 1021.2 671 941 800 752 852 980 4 5 4 4 5 5 256450 9651 575 9558 15136;15137;15138 19774;19775;19776;19777;19778;19779 19778 6 ISLRNSSK Phospho (STY) 983.48011 0.48010978 2606 Q9H040 SPRTN SprT-like domain-containing protein Spartan yes yes 0 0 0 1 1 9 0 1 60.648 60.648 3 0.037625 15971 TMT1-8 48.794 10.501 68.703 86.23 102.01 63.643 70.318 90.735 65 87 102 65 73 87 1 1 1 1 1 1 8214.6 9652 2606 9559 15139 19780 19780 10;11 1 ISLTQAGLEALFESNLLDDLK Unmodified 2289.2104 0.21039329 1886 Q5IFJ8;Q16401 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 8 0 1 99.853 99.853 3 3.3912E-07 32591 TMT1-7 80.412 57.759 7.446 4.702 6.9319 7.2379 0 10.66 7 5 7 7 0 10 1 1 1 1 0 1 724.59 9653 1886 9560 15140 19781 19781 1 ISMFGTSVTIK Unmodified 1182.6318 0.6318456 3071 yes no 0 0 0 0 0 8.5 0.5 1 1 74.53 74.53 3 0.0038107 23158 TMT1-7 72.2 49.083 260.49 408.52 416.67 292.55 384.74 345.07 247 407 421 297 392 334 3 3 3 3 3 3 52125 + 9654 3071 9561 15141;15142 19782;19783;19784 19782 3 ISMPDFDLHLK Unmodified 1314.6642 0.66420836 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 7.5 0.5 1 1 67.665 67.665 3 0.00029504 20533 TMT1-7 97.734 58.468 495.7 681.6 508.38 389.68 508.61 659.2 468 680 526 393 525 632 3 3 3 3 3 3 62118 9655 1632 9562 15143;15144 19785;19786;19787 19787 3 ISMPDFDLNLK Unmodified 1291.6482 0.64822394 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 75.078 75.078 3 0.00066866 23389 TMT1-6 90.149 49.56 37.972 81.876 40.901 35.977 49.619 60.412 36 80 44 36 51 58 1 1 1 1 1 1 8313.2 9656 1632 9563 15145 19788 19788 1 ISMPDIDFNLK Unmodified 1291.6482 0.64822394 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 74.668 74.668 2 0.001113 23252 TMT1-6 69.276 21.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9657 1632 9564 15146 19789 19789 1 ISMPDIDLNLTGPK Unmodified 1512.7858 0.78578005 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 74.296 74.296 3 3.3103E-05 23082 TMT1-6 91.032 68.153 53.803 80.04 86.854 49.522 55.519 83.696 51 80 87 51 58 80 1 1 1 1 1 1 10116 9658 1632 9565 15147 19790 19790 1 ISMPDLDLHLK Unmodified 1280.6799 0.67985842 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 66.29 66.29 3 0.0012322 19959 TMT1-6 84.309 61.776 130.52 159.59 110.37 110.11 130.05 269.19 123 160 116 109 138 256 1 1 1 1 1 1 16396 9659 1632 9566 15148 19791 19791 1 ISMPDLDLNLK Unmodified 1257.6639 0.663874 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 72.841 72.841 3 1.5574E-07 22505 TMT1-6 145.46 0 160.09 346.36 211.67 228.8 239.83 263.92 152 339 225 225 248 254 2 2 2 2 2 2 43098 9660 1632 9567 15149 19792;19793 19792 2 ISMPDVDFNLK Unmodified 1277.6326 0.63257388 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 71.506 71.506 3 0.010605 21967 TMT1-6 61.344 34.671 68.797 117.79 59.553 75.498 39.409 91.617 65 116 65 73 44 87 1 1 1 1 1 1 13679 9661 1632 9568 15150 19794 19794 1 ISMPDVDLHLK Unmodified 1266.6642 0.66420836 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 6.5 0.5 1 1 62.413 62.413 3 4.7247E-06 19002 TMT1-5 117.45 73.097 547.61 868.26 462.16 465.57 513.77 833.88 517 858 497 460 539 796 2 2 2 2 2 2 88687 9662 1632 9569 15151;15152 19795;19796 19795 2 ISMPDVDLHVK Unmodified 1252.6486 0.64855829 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 58.558 58.558 3 0.004003 17517 TMT1-5 71.555 36.668 84.705 147.47 65.763 88.635 134.84 158.18 80 145 73 87 138 152 1 1 1 1 1 1 23059 9663 1632 9570 15153 19797 19797 1 ISMPDVGLNLK Unmodified 1185.6427 0.64274463 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 68.695 68.695 3 2.0921E-05 20973 TMT1-7 112.89 98.203 92.418 123.77 51.901 66.509 76.71 114.01 87 123 58 65 80 109 1 1 1 1 1 1 10477 9664 1632 9571 15154 19798 19798 1 ISMPDVNLNLK Unmodified 1242.6642 0.66420836 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 68.072 68.072 3 0.0036762 20715 TMT1-7 72.652 39.462 84.628 123.51 98.996 79.256 121.4 105.27 80 123 102 80 123 102 1 1 1 1 1 1 10608 9665 1632 9572 15155 19799 19799 1 ISMPEIDLNLK Unmodified 1271.6795 0.67952407 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 73.04 73.04 3 0.00012134 22612 TMT1-6 102.53 62.614 53.833 103.87 61.598 50.024 108.89 82.173 51 102 65 51 109 80 1 1 1 1 1 1 10978 9666 1632 9573 15156 19800 19800 1 ISMPEVDLNLK Unmodified 1257.6639 0.663874 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 6.5 0.5 1 1 69.555 69.555 3 0.00060818 21312 TMT1-6 64.82 7.4728 69.134 72.319 41.324 35.829 56.148 83.678 65 73 44 36 58 80 1 1 1 1 1 1 5054.7 9667 1632 9574 15157;15158 19801;19802 19802 2 ISMPGFKGEGPEVDVNLPK Unmodified 2013.0241 0.024112846 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 1 7 0 1 65.585 65.585 3 0.014346 19694 TMT1-6 45.82 30.398 53.824 95.209 70.423 57.904 68.713 145.15 51 94 73 58 73 138 1 1 1 1 1 1 8088.9 9668 1632 9575 15159 19803 19803 1 ISNFLLEK Unmodified 962.54368 0.54368251 44 O00160;Q12965 MYO1F;MYO1E Unconventional myosin-If;Unconventional myosin-Ie yes no 0 0 0 0 0 8 0 1 66.324 66.324 2 0.013883 20048 TMT1-7 94.692 77.306 225.16 392.63 236.62 230.63 237.73 261.85 213 387 251 228 246 252 1 1 1 1 1 1 29070 9669 44 9576 15160 19804 19804 1 ISNGGLEEGKPVDLVLSCVDNFEAR Unmodified 2717.333 0.3330444 2605 Q9GZZ9-2;Q9GZZ9 UBA5 Ubiquitin-like modifier-activating enzyme 5 yes no 0 0 0 0 1 5 0 1 80.178 80.178 3 0.045308 25845 TMT1-4 34.04 20.473 30.966 13.64 13.849 31.574 20.777 22.859 29 15 15 30 22 22 1 1 1 1 1 1 3472.4 9670 2605 9577 15161 19805 19805 1 ISNYGWDQSDK Unmodified 1311.5731 0.57314474 2678 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 0 5 0 1 52.66 52.66 3 4.5815E-06 15071 TMT1-4 117.86 92.3 46.081 95.077 109.56 54.835 107.87 105.65 44 94 109 58 109 102 1 1 1 1 1 1 8956.8 9671 2678 9578 15162 19806 19806 1 ISPDGEEGYPGELK Unmodified 1489.6937 0.69365381 2377 Q96C23 GALM Aldose 1-epimerase yes yes 0 0 0 0 0 3 0 1 54.447 54.447 3 0.0049114 17034 TMT1-2 60.345 24.634 30.533 66.401 41.908 35.074 94.426 66.596 29 65 44 36 94 65 1 1 1 1 1 1 9906.6 9672 2377 9579 15163 19807 19807 1 ISPLQFR Unmodified 859.49159 0.49158736 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 53.677 53.677 2 0.024137 13131 TMT1-8 92.677 35.786 160.4 256.55 236.52 229.08 204.13 237.22 152 255 243 226 213 228 1 1 1 1 1 1 26116 9673 1287 9580 15164 19808 19808 1 ISQAEEEDQQLLGHLLLVAK Unmodified 2233.1954 0.19541193 2565 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 0 6 0 2 77.954 77.954 3;4 9.6492E-18 25192 TMT1-5 120.11 93.056 77.677 55.427 62.619 89.65 90.854 97.611 73 58 65 87 94 94 1 1 1 1 1 1 23105 9674 2565 9581 15165;15166 19809;19810 19809 2 ISQATAQIK Unmodified 958.54475 0.54474515 2128 Q86Y82 STX12 Syntaxin-12 yes yes 0 0 0 0 0 7 0 1 44.139 44.139 2 0.0017308 11197 TMT1-6 114.39 25.348 84.72 123.77 83.402 64.63 76.796 114 80 123 87 65 80 109 1 1 1 1 1 1 8331.3 9675 2128 9582 15167 19811 19811 1 ISQLEMAR Unmodified 946.4906 0.49060109 894 P26038 MSN Moesin yes yes 0 0 0 0 0 4.5 0.5 1 1 46.815 46.815 2 5.635E-13 12738 TMT1-4 190.73 109.35 595.24 879.5 743.61 587.86 732.9 959.81 563 876 763 591 758 920 1 1 1 1 1 1 114550 9676 894 9583 15168;15169 19812;19813 19813 2 ISQSNYIPTQQDVLR Unmodified 1760.9057 0.90571227 577 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 0 5 0 1 55.298 55.298 3 8.6004E-06 16091 TMT1-4 95.538 73.442 108.32 107.02 98.774 103.76 97.518 128.34 102 109 102 102 102 123 1 1 1 1 1 1 16762 9677 577 9584 15170 19814 19814 1 ISQTVEILK Unmodified 1029.607 0.60701105 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 7 0 1 58.54 58.54 2 0.0019392 16880 TMT1-6 109.83 37.04 115.5 175.75 95.336 87.571 97.713 144.32 109 174 102 87 102 138 1 1 1 1 1 1 14849 9678 2486 9585 15171 19815 19815 1 ISQTYQQQYGR Unmodified 1370.6579 0.65787742 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 5 0 1 38.426 38.426 2 2.3545E-06 9446 TMT1-4 132.32 75.887 23.26 36.277 27.433 37.056 34.926 29.917 22 36 29 36 36 29 1 1 1 1 1 1 13151 9679 598 9586 15172 19816 19816 1 ISQYANLLELEQQLQR Unmodified 1945.0269 0.026890038 3099 yes yes 0 0 0 0 0 8 0.707 1 2 1 111.99 111.99 2;3 0.0016657 34130 TMT1-6 63.29 41.28 209.13 374.48 241.35 192.63 267.56 266.33 198 369 252 194 273 257 11 11 10 11 11 11 305770 + 9680 3099 9587 15173;15174;15175;15176 19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827 19818 11 ISREESEQIVLIGSK Unmodified 1686.9152 0.91521432 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 1 6 0 1 53.773 53.773 3 0.0034934 15637 TMT1-5 54.281 27.569 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9681 1115 9588 15177 19828 19828 1 ISRPGDSDDSR Unmodified 1203.548 0.54799262 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 1 3 0 1 25.099 25.099 3 0.0024592 5375 TMT1-2 82.85 62.647 69.708 132.38 74.323 88.519 113.92 127.87 66 130 80 87 117 123 2 2 2 2 2 2 12975 9682 713 9589 15178 19829;19830 19829 2 ISSDLDGHPVPK Unmodified 1263.6459 0.64591575 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 6 1 1 1 43.674 43.674 3 9.1887E-05 11407 TMT1-4 99.215 65.329 385.21 669.81 513.17 480.45 664.96 645.14 365 662 533 479 678 623 2 2 2 2 2 2 125400 9683 937 9590 15179;15180 19831;19832 19831 2 ISSIQSIVPALEIANAHR Unmodified 1918.0636 0.063609895 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 69.681 69.681 3;4 1.3383E-14 19496 TMT1-8 116.83 92.106 131.44 174.21 123.62 157.41 130.6 159.37 124 174 131 153 137 153 3 3 3 3 3 3 34208 9684 638 9591 15181;15182 19833;19834;19835 19834 3 ISSLLEEQFQQGK Unmodified 1505.7726 0.77257283 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 6.5 0.5 1 1 68.284 68.284 3 1.8799E-08 21317 TMT1-5 122.46 79.65 345.68 598.33 365.86 341.88 480.16 516.1 327 590 387 341 491 497 3 3 3 3 3 3 68773 9685 1417 9592 15183;15184 19836;19837;19838 19836 3 ISSPTETER Unmodified 1018.4931 0.49310351 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 32.275 32.275 2 6.6509E-14 8290 TMT1-2 188.98 174.12 1007.7 1522.6 1027.4 857.47 956.67 1302 952 1511 1074 857 995 1247 6 6 6 6 6 6 233900 9686 987 9593 15185;15186;15187;15188 19839;19840;19841;19842;19843;19844 19843 6 ISTAIDDMEAYTK Unmodified 1456.6756 0.6755609 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 4.67 0.471 1 2 68.421 68.421 2;3 2.4631E-08 21189 TMT1-4 127.78 90.664 245.63 365.55 246.68 281.86 271.62 333.37 232 363 261 276 283 320 4 4 4 4 4 4 59622 9687 3006 9594 15189;15190;15191 19845;19846;19847;19848 19848 4 ISTEVGITNVDLSTVDKDQSIAPK Unmodified 2529.3174 0.31737756 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 1 6 0 1 64.795 64.795 4 9.9676E-10 20006 TMT1-5 87.565 75.485 130.47 143.29 131.36 195.31 183.04 165.34 123 145 138 189 189 160 1 1 1 1 1 1 19934 9688 479 9595 15192 19849 19849 1 ISTILFGAAYTCLEAATGR Unmodified 2014.0194 0.019361819 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 9 0 1 89.28 89.28 3 9.6298E-16 27196 TMT1-8 115.57 90.776 23.403 14.011 22.192 14.677 21.004 38.843 22 15 22 15 22 37 1 1 1 1 1 1 5503.1 9689 2648 9596 15193 19850 19850 1 ISTSLPVLDLIDAIQPGSINYDLLK Unmodified 2697.484 0.48404896 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 8.75 0.433 1 3 101.84 101.84 3;4 2.747E-22 32239 TMT1-8 103.67 84.463 545.93 764.21 473 574.73 669.16 749.49 515 759 505 562 689 721 9 8 8 8 8 9 263350 9690 690 9597 15194;15195;15196;15197 19851;19852;19853;19854;19855;19856;19857;19858;19859 19856 9 ISTVVSSK Unmodified 819.47018 0.47018322 1049 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 0 8 0 1 45.115 45.115 2 0.0026086 11634 TMT1-7 135.83 86.472 209.61 301.35 222.49 332.5 329.12 327.46 198 300 237 322 340 316 1 1 1 1 1 1 33618 9691 1049 9598 15198 19860 19860 1 ISVIVETVYTHVLHPYPTQITQSEK Unmodified 2881.5226 0.52255973 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 79.009 79.009 4;5 3.4684E-32 23039 TMT1-8 130.71 113.21 162.29 188.61 155.83 115.66 155.83 181.04 153 190 160 117 160 174 3 3 3 3 3 3 13966 9692 478 9599 15199;15200 19861;19862;19863 19862 3 ISVNDFIIK Unmodified 1047.5964 0.59644637 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 8 0 1 69.648 69.648 2 0.0058463 21322 TMT1-7 96.342 25.748 123.33 98.419 107.22 94.091 120.21 120.23 116 102 109 94 123 116 1 1 1 1 1 1 16459 9693 631 9600 15201 19864 19864 1 ISVQTNEAILLALYEAVHLNR Unmodified 2366.2958 0.29579468 1974 Q5T2E6 C10orf76 UPF0668 protein C10orf76 yes yes 0 0 0 0 0 9 0 1 88.415 88.415 3 1.0082E-05 26827 TMT1-8 59.868 44.143 30.919 13.51 21.842 22.35 20.944 30.316 29 15 22 22 22 29 1 1 1 1 1 1 3368.1 9694 1974 9601 15202 19865 19865 1 ISVQTPVDQLLQDGLQLR Unmodified 2022.111 0.11095402 343 O95248;O95248-5;O95248-4 SBF1 Myotubularin-related protein 5 yes no 0 0 0 0 0 7 0 1 83.51 83.51 3 0.023702 26707 TMT1-6 39.825 23.14 7.0198 45.609 43.906 20.891 28.597 22.636 7 44 44 22 29 22 1 1 1 1 1 1 3293.7 9695 343 9602 15203 19866 19866 1 ISVSAASK Unmodified 761.42832 0.42831841 922 P28062-2;P28062 PSMB8 Proteasome subunit beta type-8 yes no 0 0 0 0 0 7 0 1 41.559 41.559 2 0.0029841 10211 TMT1-6 133.86 52.079 145.31 376.3 326.53 307.75 443.53 379.63 139 368 336 307 450 368 1 1 1 1 1 1 40797 9696 922 9603 15204 19867 19867 1 ISVSFYHVK Unmodified 1078.5811 0.58113065 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 9 0 1 51.768 51.768 3 0.0012956 12450 TMT1-8 94.692 65.965 84.402 154.18 110.95 109.71 149.85 119.38 80 152 116 109 152 116 1 1 1 1 1 1 16403 9697 1328 9604 15205 19868 19868 1 ISVTFDPFCYLTLPLPMK Unmodified 2141.0941 0.094106666 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 9 0 1 100.35 100.35 3 0.0041573 31195 TMT1-8 47.916 27.253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9698 3012 9605 15206 19869 19869 1 ISVTQPDSIVGIVAVDK Unmodified 1739.9669 0.96691554 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 7 0 1 72.945 72.945 3 2.7676E-05 22570 TMT1-6 61.102 41.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9699 2056 9606 15207 19870 19870 1 ISVYSIMGGSTDGLR Unmodified 1554.7712 0.77119262 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 8 0 1 68.556 68.556 2 3.822E-14 20917 TMT1-7 115.57 85.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9700 336 9607 15208 19871 19871 1 ISVYYNEATGGK Unmodified 1300.6299 0.62993134 537 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 0 5 2.35 1 2 1 54.514 54.514 2;3 3.4761E-25 15797 TMT1-5 199.19 175.2 1972.6 2805.3 1873.8 1687.4 1919.2 2743.5 1862 2791 1966 1679 1999 2625 4 4 4 4 4 4 714320 9701 537 9608 15209;15210;15211;15212 19872;19873;19874;19875 19873 4 ISVYYNEAYGR Unmodified 1333.6303 0.63026569 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 6.5 1.71 1 1 1 1 1 1 52.505 52.505 2 6.5667E-32 15056 TMT1-4 212.4 171.37 1485.6 1903.1 1543.3 1220.4 1293 2078 1402 1907 1589 1223 1358 1984 5 5 5 5 5 5 475380 9702 2650 9609 15213;15214;15215;15216;15217;15218 19876;19877;19878;19879;19880;19881;19882 19878 7 ISYDAQFEVIK Unmodified 1311.6711 0.67106787 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 5.5 0.5 1 1 63.719 63.719 3 2.0274E-06 19495 TMT1-5 125.23 84.637 269.68 366.45 350.12 287.62 334.98 460.55 255 367 357 288 348 441 2 2 2 2 2 2 40503 9703 740 9610 15219;15220 19883;19884 19884 2 ISYFTFIGTPVQATNMNDFKR Unmodified 2449.21 0.21001614 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 1 9 0 1 73.391 73.391 4 0.00070291 20994 TMT1-8 47.499 22.177 68.115 154.75 142.81 99.887 164.14 173.34 65 152 145 102 167 167 1 1 1 1 1 1 7235.4 9704 171 9611 15221 19885 19885 1 ISYGNDALMPSLTETK Unmodified 1738.8448 0.8447515 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 6 0 1 65.741 65.741 3 1.5653E-06 20339 TMT1-5 92.977 68.183 61.174 102.88 90.941 96.2 59.639 114.49 58 102 94 94 65 109 1 1 1 1 1 1 10385 9705 482 9612 15222 19886 19886 1 ISYSLFTALR Unmodified 1169.6445 0.64445919 1948 Q53GQ0;Q53GQ0-2 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 0 0 0 0 0 9 0 1 70.715 70.715 2 0.034771 19957 TMT1-8 65.535 38.011 30.531 51.284 55.091 99.531 54.282 52.817 29 51 58 95 58 51 1 1 1 1 1 1 5799.8 9706 1948 9613 15223 19887 19887 1 ISYVISIK Unmodified 921.55352 0.55351892 2047 Q6UWL2-3;Q6UWL2;Q6UWL2-2 SUSD1 Sushi domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 63.518 63.518 2 0.0017781 17105 TMT1-8 137.9 56.12 161.58 126 148.82 163.26 146.33 150.39 152 131 152 160 152 145 1 1 1 1 1 1 14110 9707 2047 9614 15224 19888 19888 1 ITAAQHSVTGSAVSK Unmodified 1455.7682 0.76815616 1710 Q13492-3;Q13492-2;Q13492-5;Q13492 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 0 8 1 1 1 38.05 38.05 3 4.4585E-06 8867 TMT1-6 78.902 51.932 15.483 52.24 58.653 20.002 29.172 37.544 15 51 58 22 30 36 1 1 1 1 1 1 4650.6 9708 1710 9615 15225;15226 19889;19890 19889 2 ITAEEMYDIFGK Unmodified 1415.6643 0.66426794 2991 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 0 0 0 6 0 1 77.423 77.423 2 3.7477E-07 24922 TMT1-5 124.1 103.9 30.615 59.074 34.295 21.505 26.443 84.525 29 58 36 22 29 80 1 1 1 1 1 1 6123.5 9709 2991 9616 15227 19891 19891 1 ITAELNAFNVFVCDQK Unmodified 1867.9138 0.91383411 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 7 0 1 81.189 81.189 3 0.0009693 25772 TMT1-6 51.798 35.616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9710 2064 9617 15228 19892 19892 1 ITAFVPNDGCLNFIEENDEVLVAGFGR Unmodified 2995.4386 0.4385721 1424 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 0 6 0 1 91.926 91.926 4 2.013E-05 30427 TMT1-5 55.526 36.645 19.005 25.881 30.029 17.56 17.233 22.96 18 26 30 18 18 22 2 2 2 2 2 2 4626.1 9711 1424 9618 15229 19893;19894 19894 2 ITAFVVER Unmodified 933.52837 0.5283668 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 55.318 55.318 2 0.0062236 15626 TMT1-6 72.23 43.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9712 1194 9619 15230 19895 19895 1 ITAHLVHELR Unmodified 1187.6775 0.67749065 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 7 0 1 39.756 39.756 4 1.4169E-05 9439 TMT1-6 140.17 87.533 130.45 174.53 108.42 133.78 156.32 142.65 123 174 116 131 160 138 2 2 2 2 2 2 19334 9713 1102 9620 15231 19896;19897 19896 2 ITAIITQGCK Unmodified 1103.6009 0.60087982 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 9 0 1 56.818 56.818 3 0.0021939 14464 TMT1-8 69.276 41.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9714 666 9621 15232 19898 19898 1 ITAILLLR Unmodified 911.61679 0.61678788 3072 yes yes 0 0 0 0 0 9 0 1 40.379 40.379 3 0.046097 8185 TMT1-8 41.025 0 383.43 481.91 431.17 315.63 331.83 575.77 362 484 440 318 350 549 1 1 1 1 1 1 28827 + 9715 3072 9622 15233 19899 19899 1 ITALDEFATK Unmodified 1107.5812 0.58119023 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 64.465 64.465 2 2.331E-05 19822 TMT1-5 151.22 57.754 123 151.45 118.51 109.4 142.28 127.06 116 152 123 109 145 123 1 1 1 1 1 1 19174 9716 1737 9623 15234 19900 19900 1 ITAQSIEELCAVNLYGPDAQVDR Unmodified 2561.2432 0.24316676 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 5 0 1 75.148 75.148 3 1.3529E-29 23867 TMT1-4 108.55 92.065 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9717 1507 9624 15235 19901 19901 1 ITASEALK Unmodified 831.47018 0.47018322 1719 Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 0 0 0 0 0 6 0 1 45.941 45.941 2 0.0019203 12541 TMT1-5 83.005 58.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9718 1719 9625 15236 19902 19902 1 ITASYEDR Unmodified 953.44543 0.44542503 3046 Q9Y624 F11R Junctional adhesion molecule A yes yes 0 0 0 0 0 3 0 1 36.834 36.834 2 1.1843E-08 9989 TMT1-2 178.87 127.97 260.58 313.59 302.8 158.97 293.01 331.69 246 316 305 167 298 319 2 2 2 2 2 2 84606 9719 3046 9626 15237 19903;19904 19903 2 ITCLCQVPQNAANR Unmodified 1643.7872 0.78719381 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 47.801 47.801 3 0.012997 12746 TMT1-7 52.101 34.933 77.424 86.025 79.128 42.208 62.122 114.42 73 87 80 44 65 109 1 1 1 1 1 1 6946.7 9720 1184 9627 15238 19905 19905 1 ITCVETVVPEK Unmodified 1273.6588 0.65878863 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 56.025 56.025 3 0.0006169 16368 TMT1-4 90.685 63.587 77.528 86.313 61.441 74.523 85.283 66.856 73 87 65 73 87 65 1 1 1 1 1 1 8449.7 9721 1601 9628 15239 19906 19906 1 ITDAYLDQYLWYEADKR Unmodified 2162.032 0.032034995 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 1 6 0 1 72.185 72.185 3 0.00058929 22890 TMT1-5 52.784 40.656 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9722 2028 9629 15240 19907 19907 1 ITDFSFSDFELSDLETALCTIR Unmodified 2579.2101 0.21013529 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 6.5 0.5 1 1 99.604 99.604 3 4.1912E-06 33133 TMT1-5 69.779 58.941 7.511 15.96 0 15.044 20.483 23.067 7 15 0 14 21 22 1 1 0 2 3 2 5120.8 9723 322 9630 15241;15242 19908;19909;19910 19909 3 ITDLANLSAANHDAAIFPGGFGAAK Unmodified 2441.2339 0.2339227 0 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 0 8 0 1 72.398 72.398 3 5.2655E-19 22400 TMT1-7 104.81 83.212 54.105 73.327 41.663 28.565 34.511 53.381 51 73 44 29 36 51 1 1 1 1 1 1 16626 9724 0 9631 15243 19911 19911 1 ITDSAGHILYSK Unmodified 1303.6772 0.67721588 1197 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 0 7 0 1 50.116 50.116 3 0.00022859 13545 TMT1-6 91.093 56.593 359.55 583.14 391.72 363.19 485.22 705.7 340 577 411 362 503 675 1 1 1 1 1 1 70961 9725 1197 9632 15244 19912 19912 1 ITDTLDSIK Unmodified 1004.539 0.53899107 2167 Q8N1Q1 CA13 Carbonic anhydrase 13 yes yes 0 0 0 0 0 5 0 1 59.851 59.851 2 0.0019376 17856 TMT1-4 78.556 17.584 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9726 2167 9633 15245 19913 19913 1 ITDVALDFWR Unmodified 1234.6346 0.63462279 100 O14656 TOR1A Torsin-1A yes yes 0 0 0 0 0 7 0 1 78.546 78.546 2 0.0017554 24735 TMT1-6 70.552 37.431 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9727 100 9634 15246 19914 19914 1 ITDVIIGFQACCR Unmodified 1551.7538 0.75376842 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 8 0 1 70.456 70.456 2 2.8282E-27 21667 TMT1-7 160.91 110.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9728 1019 9635 15247 19915 19915 1 ITDVLDQK Unmodified 930.50221 0.50221163 2456 Q96T51;Q96T51-2;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 57.595 57.595 2 0.021862 16991 TMT1-4 87.639 23.375 76.605 177.64 139.25 147.99 116.92 143.77 73 174 145 145 123 138 1 1 1 1 1 1 21877 9729 2456 9636 15248 19916 19916 1 ITEAEKNER Unmodified 1088.5462 0.54620171 720 P15311 EZR Ezrin yes yes 0 0 0 0 1 2 0 1 31.362 31.362 3 0.03312 7532 TMT1-1 58.743 24.557 115.82 137.78 74.455 73.068 121.43 112.73 109 138 80 73 123 109 1 1 1 1 1 1 5589.9 9730 720 9637 15249 19917 19917 1 ITEFCHR Unmodified 961.44399 0.44398525 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 4 2.16 1 1 1 35.509 35.509 3 0.0010935 8148 TMT1-4 133.81 61.935 315.44 434.54 356.78 284.04 387.82 388.68 298 434 367 286 396 375 3 3 3 3 3 3 59426 9731 530 9638 15250;15251;15252 19918;19919;19920 19919 3 ITEIYEGTSEIQR Unmodified 1537.7624 0.76240208 737 P16219 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 0 3 0 1 55.922 55.922 2 0.047159 17617 TMT1-2 57.003 35.258 54.091 57.097 57.861 26.869 73.328 52.274 51 58 58 29 73 51 1 1 1 1 1 1 5541.6 9732 737 9639 15253 19921 19921 1 ITEKDDQVK Unmodified 1074.5557 0.55570376 3036 Q9Y5W8-2;Q9Y5W8 SNX13 Sorting nexin-13 yes no 0 0 0 0 1 4.5 0.5 1 1 37.943 37.943 3 0.0048456 9518 TMT1-3 83.499 28.96 654.14 948.17 1426 885.11 839.55 989.81 622 955 1410 902 874 951 2 2 2 2 2 2 55286 9733 3036 9640 15254;15255 19922;19923 19922 2 ITELFAVALPQLLAK Unmodified 1625.9756 0.97562974 2175 Q8N3U4;Q8N3U4-2 STAG2 Cohesin subunit SA-2 yes no 0 0 0 0 0 9 0 1 97.31 97.31 2 7.2135E-05 30026 TMT1-8 86.014 64.508 7.4211 0 15.111 0 7.322 0 7 0 14 0 7 0 1 0 1 0 1 0 1410.1 9734 2175 9641 15256 19924 19924 1 ITEMCVKMIR 2 Oxidation (M) 1311.6349 0.63489884 2017 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 2 0 1 4 0 1 64.653 64.653 2 0.0050876 20078 TMT1-3 69.198 17.762 92.224 115.68 91.465 63.71 100.13 105.87 87 116 94 65 102 102 1 1 1 1 1 1 45089 9735 2017 9642 15257 19925 19925 276;277 1 ITEQLIEAINNGDFEAYTK Unmodified 2168.0637 0.063729054 1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 0 0 0 5 0 1 81.205 81.205 3 0.0051232 26228 TMT1-4 49.089 33.667 23.295 36.374 21.504 0 21.422 46.293 22 36 22 0 22 44 1 1 1 0 1 1 3626.8 9736 1718 9643 15258 19926 19926 1 ITESEEVVSR Unmodified 1147.5721 0.57208211 429 P02545-2;P02545-6;P02545-3;P02545 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 2 0 1 41 41 2 0.0016197 11422 TMT1-1 101.97 63.198 146.85 119.22 104.75 118.87 88.96 113.66 138 123 109 116 94 109 2 2 2 2 2 2 21587 9737 429 9644 15259 19927;19928 19928 2 ITEYLCEPLRK Unmodified 1420.7384 0.73843593 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 1 7 0 1 56.951 56.951 3 0.014709 16255 TMT1-6 62.89 38.903 191.1 283.49 283.58 225.83 227.76 284.52 181 283 288 226 237 273 1 1 1 1 1 1 26027 9738 1467;1637 9645 15260 19929 19929 1 ITFDAFPGEPDKELNPK Unmodified 1916.952 0.95199376 1653 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 1 6 0 1 64.258 64.258 3 7.3546E-10 19773 TMT1-5 88.992 68.901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9739 1653 9646 15261 19930 19930 1 ITFDDYIACCVK Unmodified 1503.6738 0.67378676 966 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 0 6.5 0.5 1 1 68.315 68.315 2;3 7.0487E-06 21372 TMT1-5 112.15 94.23 169.72 218.09 144.69 155.28 177.04 180.43 160 218 153 153 182 174 2 2 2 2 2 2 26550 9740 966 9647 15262;15263 19931;19932 19931 2 ITFELVYEELLK Unmodified 1495.8174 0.81739776 1784 Q14624-4;Q14624-3;Q14624-2;Q14624 ITIH4 Inter-alpha-trypsin inhibitor heavy chain H4;70 kDa inter-alpha-trypsin inhibitor heavy chain H4;35 kDa inter-alpha-trypsin inhibitor heavy chain H4 yes no 0 0 0 0 0 7 0 1 91.149 91.149 3 0.00061043 29536 TMT1-6 63.473 46.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9741 1784 9648 15264 19933 19933 1 ITFHGEGDQEPGLEPGDIIIVLDQK Unmodified 2719.3705 0.37047576 976 P31689-2;P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 0 5 0 1 78.324 78.324 4 1.2862E-10 25084 TMT1-4 82.267 67.806 38.202 43.663 34.533 36.061 65.336 29.05 36 44 36 36 65 29 1 1 1 1 1 1 8314.5 9742 976 9649 15265 19934 19934 1 ITFLLQAIR Unmodified 1073.6597 0.65971533 65 O00410;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 0 9 0 1 78.768 78.768 2 0.0017831 23134 TMT1-8 114.64 69.678 116.04 90.91 76.628 87.376 167.39 95.427 109 94 80 87 167 94 1 1 1 1 1 1 25633 9743 65 9650 15266 19935 19935 1 ITFTGEADQAPGVEPGDIVLLLQEK Unmodified 2639.3694 0.36941313 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 6 0 1 89.081 89.081 4 1.516E-14 29401 TMT1-5 98.121 84.709 38.24 39.449 31.852 29.064 39.079 41.525 36 40 33 29 40 40 1 1 1 1 1 1 11303 9744 245 9651 15267 19936 19936 1 ITFVDFIAYDVLER Unmodified 1699.8821 0.88212328 927 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 0 7 0 2 95.293 95.293 2;3 3.3124E-06 31025 TMT1-6 102.73 92.351 23.212 44.778 28.301 30.426 36.022 37.348 22 44 30 30 37 36 2 2 2 2 2 2 8511.2 9745 927 9652 15268;15269 19937;19938 19938 2 ITFVDFLVYDVLDLHR Unmodified 1964.0407 0.040749188 591 P09488 GSTM1 Glutathione S-transferase Mu 1 yes yes 0 0 0 0 0 8 0 1 100.67 100.67 3 0.013107 32813 TMT1-7 49.343 33.204 7.4172 11.097 6.3643 11.368 14.633 15.572 7 11 7 11 15 15 1 1 1 1 1 1 1297.5 9746 591 9653 15270 19939 19939 1 ITGANAK Unmodified 673.37589 0.3758889 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 7 0 1 34.176 34.176 2 0.016353 7240 TMT1-6 100.45 35.648 193.31 78.113 84.964 78.767 191.88 63.815 181 87 87 80 189 65 1 1 1 1 1 1 10531 9747 2654;2802 9654 15271 19940 19940 1 ITGCASPGK Unmodified 889.43275 0.43275186 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 7 0 1 37.165 37.165 2 0.0038006 8452 TMT1-6 100.84 68.881 123.25 137.03 88.967 87.502 121.57 89.273 116 138 94 87 123 87 1 1 1 1 1 1 10028 9748 1233 9655 15272 19941 19941 1 ITGEAFVQFASQELAEK Unmodified 1866.9363 0.9363437 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 6.33 0.471 2 1 81.623 81.623 3;4 2.1214E-19 25951 TMT1-6 139.67 116.8 369.05 480.4 325.05 297.03 494.89 512.48 348 480 341 298 503 494 7 7 7 7 7 7 85708 9749 1271 9656 15273;15274;15275 19942;19943;19944;19945;19946;19947;19948 19947 7 ITGEIMHALK Unmodified 1111.606 0.6059652 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 7.5 0.5 1 1 57.081 57.081 3 0.0065195 16242 TMT1-6 68.893 16.615 277.47 342.97 323.17 267.5 327.63 336.04 262 345 330 268 336 324 2 2 2 2 2 2 28122 9750 2718 9657 15276;15277 19949;19950 19949 2 ITGIEPLPGENK Unmodified 1266.682 0.68196691 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 5 0 1 57.078 57.078 2 3.6627E-09 16771 TMT1-4 152.64 133.97 53.861 87.757 70.544 65.224 85.967 59.375 51 87 73 65 87 58 1 1 1 1 1 1 9001.4 9751 1960 9658 15278 19951 19951 1 ITGTMPPLPLEATGLALSSLR Unmodified 2137.1817 0.18167612 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 9 0 1 87.455 87.455 3 4.2435E-13 26484 TMT1-8 88 69.635 23.213 36.147 35.372 29.063 27.965 30.116 22 36 36 29 29 29 1 1 1 1 1 1 7138.9 9752 568 9659 15279 19952 19952 1 ITGYIIK Unmodified 806.49019 0.49019038 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 9 0 1 57.737 57.737 2 0.04732 14816 TMT1-8 81.784 26.389 145.95 221.41 169.19 113.47 171.91 142.2 138 220 174 116 174 138 1 1 1 1 1 1 14786 9753 442 9660 15280 19953 19953 1 ITHLPGALLDK Unmodified 1176.6867 0.68665836 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 2 56.4 56.4 2;3 3.033E-06 16144 TMT1-7 122.33 82.324 1587.8 2337.2 2023.7 1716.9 2026.9 2188.2 1502 2329 2078 1716 2085 2107 3 3 3 3 3 3 301900 9754 1067 9661 15281;15282 19954;19955;19956 19955 3 ITHLSTLQVGSLNVK Unmodified 1608.9199 0.91990577 1905 Q16775;Q16775-2 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 0 0 0 9 0 1 57.008 57.008 3 0.00065605 14507 TMT1-8 59.513 26.567 91.975 138.73 113.61 69.874 167.13 126.35 87 138 116 73 167 123 1 1 1 1 1 1 9339.5 9755 1905 9662 15283 19957 19957 1 ITHSPLTICFPEYTGANK Unmodified 2048.0037 0.0037117545 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 8 0 1 61.432 61.432 3 3.3751E-19 18107 TMT1-7 132.15 114.67 122.14 211.66 211.91 142 205.13 172.17 116 210 214 145 208 167 1 1 1 1 1 1 66396 9756 480 9663 15284 19958 19958 1 ITHSPLTICFPEYTGANKYDEAASYIQSK Unmodified 3303.5758 0.57579386 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 1 8 0 2 67.596 67.596 4;5 9.8351E-32 20580 TMT1-7 128.92 119.93 746.16 1075.5 820.56 619.53 780.85 1074.6 705 1071 847 625 809 1029 6 6 6 6 6 6 104890 9757 480 9664 15285;15286 19959;19960;19961;19962;19963;19964 19963 6 ITIAAYLPLK Unmodified 1101.6798 0.67978207 2259 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 0 9 0 1 74.496 74.496 3 0.018586 21439 TMT1-8 51.092 22.923 54.177 49.781 49.636 51.318 77.958 97.979 51 51 51 51 80 94 1 1 1 1 1 1 3206.5 9758 2259 9665 15287 19965 19965 1 ITIADCGQLE Unmodified 1118.5278 0.52777445 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 0 3 0.816 1 1 1 62.152 62.152 2 0.0004401 20002 TMT1-2 117.4 80.698 368.62 656.4 427.75 401.99 516.8 617.39 349 647 450 400 532 593 6 6 6 6 6 6 405730 9759 1461 9666 15288;15289;15290 19966;19967;19968;19969;19970;19971 19968 6 ITITNDK Unmodified 803.43888 0.43888309 641;618;754 P11142;P54652;P17066;P0DMV8;P0DMV9;P0DMV8-2 HSPA8;HSPA2;HSPA6;HSPA1A;HSPA1B Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 6 0 1 43.86 43.86 2 0.0052504 11786 TMT1-5 134.81 50.567 1951.5 2977.7 2401.4 2171.8 2908.4 2530.8 1846 2960 2483 2168 2959 2452 2 2 2 2 2 2 381560 9760 641;754;618 9667 15291 19972;19973 19973 2 ITITNDKGR Unmodified 1016.5615 0.56145784 641;618;754 P11142;P54652;P17066;P0DMV8;P0DMV9;P0DMV8-2 HSPA8;HSPA2;HSPA6;HSPA1A;HSPA1B Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 1 8 0 1 36.793 36.793 3 0.0006633 8364 TMT1-7 110.47 63.661 327.1 481.89 341.47 319.73 281.97 560.13 309 479 357 316 302 533 1 1 1 1 1 1 25104 9761 641;754;618 9668 15292 19974 19974 1 ITITNDQNR Unmodified 1073.5465 0.54653606 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4 1.87 1 1 1 1 37.572 37.572 2 3.1646E-50 9002 TMT1-4 240 174.12 490.07 719 521.44 362.47 577.26 676.43 463 715 539 370 590 650 5 5 5 5 5 5 134790 9762 640 9669 15293;15294;15295;15296 19975;19976;19977;19978;19979 19977 5 ITLDNAYMEK Oxidation (M) 1212.5696 0.56963927 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 0 5.5 0.5 1 1 52.38 52.38 3 0.012602 15069 TMT1-4 73.841 45.514 215.85 313.31 245.17 219.36 228.63 359.11 204 312 254 218 240 343 2 2 2 2 2 2 39487 9763 706;707 9670 15297;15298 19980;19981 19980 133 2 ITLDNAYMEK Unmodified 1196.5747 0.57472465 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5.5 0.5 2 2 58.22 58.22 2;3 7.2616E-05 17389 TMT1-5 120.63 89.206 1400.3 2132 1620.5 1302 1358.5 2437.6 1324 2118 1676 1303 1436 2323 5 5 5 5 5 5 254550 9764 706;707 9670 15299;15300;15301;15302 19982;19983;19984;19985;19986 19985 5 ITLEDVISHSK Unmodified 1240.6663 0.66631685 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6.5 0.5 1 1 59.859 59.859 3 1.3173E-05 18039 TMT1-5 114.86 81.634 622.36 787.82 771.91 583.13 778.38 921.2 588 792 784 589 800 885 4 4 4 4 4 4 62619 9765 1723 9671 15303;15304 19987;19988;19989;19990 19988 4 ITLEEYR Unmodified 922.476 0.47599688 2373 Q96BS2-2;Q96BS2-3;Q96BS2 TESC Calcineurin B homologous protein 3 yes no 0 0 0 0 0 4 0 1 47.65 47.65 2 0.0252 13355 TMT1-3 93.561 49.141 122.74 135.63 174.78 106.21 133.23 181.68 116 138 174 109 138 174 1 1 1 1 1 1 18761 9766 2373 9672 15305 19991 19991 1 ITLLSALVETR Unmodified 1214.7234 0.72343779 408 P01011 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 0 0 0 0 0 9 0 1 77.097 77.097 2 0.006905 22403 TMT1-8 76.85 26.218 61.604 56.591 57.84 27.156 58.16 36.716 58 58 58 29 58 36 1 1 1 1 1 1 6664.7 9767 408 9673 15306 19992 19992 1 ITLNLPASTPVR Unmodified 1280.7452 0.74523587 2430 Q96K76-4;Q96K76 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 9 0 1 59.597 59.597 2 7.2558E-07 15551 TMT1-8 120.36 76.051 54.219 49.9 42.365 44.361 64.148 52.536 51 51 44 44 65 51 1 1 1 1 1 1 5178.7 9768 2430 9674 15307 19993 19993 1 ITLPVDFVTADK Unmodified 1317.718 0.71801807 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 7 0 1 74.308 74.308 3 0.011163 23078 TMT1-6 57.802 41.577 176.6 232.01 239 131.66 262.13 201.46 167 233 240 138 263 196 1 1 1 1 1 1 23070 9769 397 9675 15308 19994 19994 1 ITLPVDFVTADKFDENAK Unmodified 2022.031 0.030972363 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 5.4 2.24 1 2 2 73.315 73.315 3;4 3.6833E-31 22693 TMT1-6 178.12 171.17 1692.3 2487.7 2017.8 1707.3 2205.1 2706.5 1600 2477 2081 1710 2272 2598 7 7 7 7 7 7 539660 9770 397 9676 15309;15310;15311;15312;15313 19995;19996;19997;19998;19999;20000;20001 20000 7 ITLQDVVSHSK Unmodified 1225.6667 0.6666512 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7 0 1 53.159 53.159 3 1.3152E-05 14765 TMT1-6 114.87 69.71 358.09 467.56 373.84 313.32 462.41 431.33 338 468 386 315 470 417 1 1 1 1 1 1 54932 9771 1139 9677 15314 20002 20002 1 ITLTEIEPSVETTTQEK Unmodified 1917.9783 0.97826809 1907 Q5IS59;Q16799 RTN1 Reticulon-1 yes no 0 0 0 0 0 4 0 1 64.041 64.041 3 5.9235E-19 19811 TMT1-3 135.23 105.55 38.119 50.986 42.355 44.928 34.015 45.933 36 51 44 44 36 44 1 1 1 1 1 1 7859 9772 1907 9678 15315 20003 20003 1 ITLVSAAPGK Unmodified 955.57023 0.57023162 2704 Q9NPJ3-2;Q9NPJ3 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes no 0 0 0 0 0 9 0 1 53.134 53.134 3 0.0057674 12994 TMT1-8 64.297 25.493 77.28 109.37 83.598 80.461 106.18 120.63 73 109 87 80 109 116 1 1 1 1 1 1 13894 9773 2704 9679 15316 20004 20004 1 ITLVSSGSGTMGAAK Unmodified 1378.7126 0.71261511 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 9 0 1 53.654 53.654 3 2.0544E-07 13241 TMT1-8 90.444 65.058 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9774 318 9680 15317 20005 20005 1 ITNDAREDEMEENLTQVGSILGNLK Unmodified 2788.3549 0.35490205 45 O00161 SNAP23 Synaptosomal-associated protein 23 yes yes 0 0 0 0 1 5 0 1 78.877 78.877 4 2.2631E-14 25340 TMT1-4 98.199 79.155 38.24 35.134 35.369 28.778 43.133 45.673 36 36 36 29 44 44 1 1 1 1 1 1 6881.5 9775 45 9681 15318 20006 20006 1 ITNDFYPEEDGK Unmodified 1426.6252 0.62523989 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 4 0 1 56.151 56.151 3 0.0027988 16708 TMT1-3 70.412 48.539 60.99 141.23 89.353 80.24 99.662 97.36 58 138 94 80 102 94 1 1 1 1 1 1 13889 9776 1328 9682 15319 20007 20007 1 ITNQVHGLK Unmodified 1008.5716 0.5716286 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 8 0 1 39.063 39.063 3 6.5494E-05 9259 TMT1-7 94.692 57.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9777 1251 9683 15320 20008 20008 1 ITNSLTVLCSEK Unmodified 1363.7017 0.70171607 303 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 0 7 0 1 60.79 60.79 2 0.0027222 17821 TMT1-6 84.297 45.521 38.174 51.138 32.989 60.659 40.898 68.123 36 51 36 58 44 65 1 1 1 1 1 1 9097.2 9778 303 9684 15321 20009 20009 1 ITPAHDQNDYEVGQR Unmodified 1741.802 0.80197548 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 3 0 1 35.837 35.837 3 5.1181E-19 9660 TMT1-2 157.35 140.46 30.802 28.296 28.895 14.134 28.651 30.096 29 29 29 15 29 29 1 1 1 1 1 1 10146 9779 903 9685 15322 20010 20010 1 ITPDQQK Unmodified 828.43413 0.43413207 1366 P61006 RAB8A Ras-related protein Rab-8A yes yes 0 0 0 0 0 5 0 1 35.939 35.939 2 0.036837 8379 TMT1-4 87.616 36.65 215.6 213.14 191.79 143.72 177.04 165.51 203 217 196 145 181 160 2 2 2 2 2 2 31273 9780 1366 9686 15323 20011;20012 20011 2 ITPELLTR Unmodified 941.55458 0.55458155 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6.5 0.5 1 1 54.04 54.04 2 0.0021446 15675 TMT1-5 138.26 72.124 566.67 668.71 674.82 621.83 539.68 723.34 535 675 689 615 567 693 2 2 2 2 2 2 147620 9781 787 9687 15324;15325 20013;20014 20013 2 ITPENLPQILLQLK Unmodified 1618.9658 0.96579333 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 9 0 1 87.775 87.775 3 5.332E-07 26604 TMT1-8 103.21 68.681 108.24 154.29 72.107 104.39 90.93 106.14 102 153 80 101 95 102 2 2 2 2 2 2 14464 9782 1109 9688 15326 20015;20016 20016 2 ITPLEIEVLEETVQTMDTS Unmodified 2147.0555 0.055532133 2462 Q99436 PSMB7 Proteasome subunit beta type-7 yes yes 0 0 0 0 0 4 0 1 105.37 105.37 3 0.000109 31768 TMT1-3 65.716 65.716 1.068 0.99199 0 1.0749 0.96095 1.0386 1 1 0 1 1 1 1 1 0 1 1 1 1036.4 9783 2462 9689 15327 20017 20017 1 ITPNLAEFAFSLYR Unmodified 1640.8562 0.85624288 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 9 0 1 84.857 84.857 3 3.584E-07 25479 TMT1-8 105.46 84.797 124.32 128.32 96.675 96.1 104.91 136.65 117 130 101 95 109 131 2 2 2 2 2 2 21890 9784 407 9690 15328 20018;20019 20019 2 ITPSYVAFTPEGER Unmodified 1565.7726 0.77257283 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 3 2 1 1 58.836 58.836 3 2.4086E-19 17351 TMT1-4 164.92 121.16 344.17 476.13 362.44 316.31 397.52 398 325 475 376 316 407 384 4 4 4 4 4 4 194270 9785 640 9691 15329;15330 20020;20021;20022;20023 20022 4 ITQAVLGAHDGGVFGLCALR Unmodified 2054.0731 0.073128724 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 9 0 1 67.826 67.826 3 4.8427E-19 18795 TMT1-8 114.53 91.723 30.638 44.028 43.203 36.126 34.419 45.922 29 44 44 36 36 44 1 1 1 1 1 1 15872 9786 374 9692 15331 20024 20024 1 ITQCSVEIQR Unmodified 1232.6183 0.6183208 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 5 0 1 42.118 42.118 2 0.010854 10926 TMT1-4 83.045 66.842 23.199 59.852 17.688 54.057 33.595 45.945 22 58 22 51 36 44 1 1 1 1 1 1 15404 9787 147 9693 15332 20025 20025 1 ITQDIFQQLLK Unmodified 1345.7606 0.76055158 1332 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 80.832 80.832 3 0.00083346 25643 TMT1-7 88.441 59.698 77.286 116.94 76.208 66.147 77.019 105.47 73 116 80 66 80 101 2 2 2 2 2 2 6999.6 9788 1332 9694 15333 20026;20027 20026 2 ITQSEFDR Unmodified 994.47197 0.47197413 2984 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 0 3 0 1 41.059 41.059 2 0.0059669 11707 TMT1-2 111.61 60.709 123.21 144.5 88.162 95.524 104.42 151.59 116 145 94 94 109 145 1 1 1 1 1 1 16892 9789 2984 9695 15334 20028 20028 1 ITQSNAILR Unmodified 1014.5822 0.58219329 927;827 P28161;P28161-2;P21266 GSTM2;GSTM3 Glutathione S-transferase Mu 2;Glutathione S-transferase Mu 3 no no 0 0 0 0 0 7 0 1 43.837 43.837 2 0.0020738 11063 TMT1-6 106.88 38.568 130.99 105.87 76.291 73.111 113.29 136.41 123 109 80 73 116 131 1 1 1 1 1 1 20215 9790 927;827 9696 15335 20029 20029 1 ITSAPDMEDILTESEIK Unmodified 1890.9132 0.91322499 2475 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 0 4 0 1 75.538 75.538 4 0.04183 24274 TMT1-3 34.094 15.729 15.936 14.647 14.249 22.936 13.845 23.057 15 15 15 22 15 22 1 1 1 1 1 1 2757.2 9791 2475 9697 15336 20030 20030 1 ITSAYLQDIENAYK Unmodified 1627.8094 0.80935227 347 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 0 0 6 0 1 71.335 71.335 2 0.00037026 22557 TMT1-5 88.021 78.016 38.395 20.455 21.747 14.275 43.8 45.654 36 22 22 15 44 44 1 1 1 1 1 1 4647.4 9792 347 9698 15337 20031 20031 1 ITSCIFQLLQEAGIK Unmodified 1719.9229 0.92294224 843 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes yes 0 0 0 0 0 9 0 1 96.263 96.263 3 6.5598E-18 29733 TMT1-8 135.02 71.897 61.168 102.87 91.975 73.013 68.825 121.69 58 102 94 73 73 116 2 2 2 2 2 2 14310 9793 843 9699 15338 20032;20033 20033 2 ITSEALLVTQQLVK Unmodified 1541.9029 0.90285872 2116 Q86VP6;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 8 0 1 75.385 75.385 3 9.8682E-15 23573 TMT1-7 134.68 78.48 99.231 176.36 124.72 133.38 126.23 136.04 94 174 131 131 131 131 2 2 2 2 2 2 27856 9794 2116 9700 15339 20034;20035 20034 2 ITSFEEAK Unmodified 923.46001 0.46001246 1618 Q08209-3;Q08209-2;Q08209;Q08209-5;Q08209-4 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform yes no 0 0 0 0 0 5 0 1 50.375 50.375 2 0.0045882 14143 TMT1-4 123.98 94.822 258.05 282.29 212.12 172.38 274.4 216.03 243 285 220 174 277 210 1 1 1 1 1 1 24756 9795 1618 9701 15340 20036 20036 1 ITSGPFEPDLYK Unmodified 1365.6816 0.68163256 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 6 0 1 64.001 64.001 3 0.0014383 19680 TMT1-5 76.255 51.463 208.57 281 234.77 229.98 336.36 253.7 197 281 243 229 340 247 1 1 1 1 1 1 32742 9796 2943 9702 15341 20037 20037 1 ITSLQEEVK Unmodified 1045.5655 0.56554017 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 5 0 1 51.402 51.402 3 0.00030526 14549 TMT1-4 117.53 89.905 107.8 160.62 140.82 132.15 140.43 150.56 102 160 145 131 145 145 1 1 1 1 1 1 11950 9797 1708 9703 15342 20038 20038 1 ITSPLMEPSSIEK Unmodified 1430.7327 0.73268185 924 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 0 0 0 6 0 1 60.915 60.915 3 5.5215E-11 18433 TMT1-5 135.02 100.84 122.5 205.11 156.82 75.729 125.69 228.8 116 203 160 80 131 218 1 1 1 1 1 1 27532 9798 924 9704 15343 20039 20039 1 ITSVCTEK Unmodified 936.45863 0.45863226 2047 Q6UWL2-3;Q6UWL2;Q6UWL2-2 SUSD1 Sushi domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 41.688 41.688 2 0.0012325 10854 TMT1-5 108.74 68.675 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9799 2047 9705 15344 20040 20040 1 ITSWFLSK Unmodified 980.53312 0.53311783 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 9 0 1 72.207 72.207 2 0.0067836 20529 TMT1-8 99.136 56.012 176.34 332.75 196.85 213.71 217.22 242.18 167 327 210 210 225 233 2 2 2 2 2 2 11770 9800 2320 9706 15345 20041;20042 20041 2 ITTTKQQDHFFQAAFLEER Unmodified 2309.144 0.14404506 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 7 0 1 57.329 57.329 4 3.0543E-06 16412 TMT1-6 78.987 75.889 123.22 113.21 114.23 86.843 76.581 90.557 116 116 116 87 80 87 1 1 1 1 1 1 12783 9801 567 9707 15346 20043 20043 1 ITVFLSTWNK Unmodified 1207.6601 0.66010926 1999 Q63HN8;Q63HN8-4;Q63HN8-6 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 75.95 75.95 2 0.0068994 22032 TMT1-8 86.882 43.61 15.822 29.439 20.959 22.418 20.135 53.791 15 29 22 22 22 51 1 1 1 1 1 1 3346.8 9802 1999 9708 15347 20044 20044 1 ITVLEALR Unmodified 913.55967 0.55966693 2761 Q9NVI7-2;Q9NVI7;Q9NVI7-3;Q5T9A4;Q5T9A4-3;Q5T2N8 ATAD3A;ATAD3B;ATAD3C ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C yes no 0 0 0 0 0 7 0 1 63.322 63.322 2 0.0064426 18765 TMT1-6 105.14 19.871 68.501 101.86 122.79 86.194 83.94 90.347 65 102 123 87 87 87 1 1 1 1 1 1 14800 9803 2761 9709 15348 20045 20045 1 ITVLQLSALLK Unmodified 1197.7697 0.76965971 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 83.293 83.293 3 0.0037536 24851 TMT1-8 66.262 34.89 23.16 36 44.402 20.867 28.342 30.105 22 36 44 22 29 29 1 1 1 1 1 1 2860.3 9804 1977 9710 15349 20046 20046 1 ITVPFLEQCPIR Unmodified 1471.7857 0.78572048 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 8 0 1 71.048 71.048 3 0.00030508 21936 TMT1-7 89.356 47.667 15.562 44.906 51.505 20.31 35.44 37.365 15 44 51 22 36 36 1 1 1 1 1 1 7610.6 9805 1150 9711 15350 20047 20047 1 ITVPLVSEVQIAQLR Unmodified 1664.9825 0.98250603 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 8 0 1 75.257 75.257 3 3.5894E-05 23497 TMT1-7 88.706 67.149 77.648 70.457 54.768 75.627 47.759 61.531 73 72 58 73 51 59 2 2 2 2 2 2 16128 9806 3 9712 15351 20048;20049 20048 2 ITVQGPGACAEVAFPCYR Unmodified 1994.9343 0.93425198 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6.5 0.5 1 1 62.751 62.751 3 2.0659E-14 19137 TMT1-5 96.143 92.041 54.022 73.096 55.824 51.058 72.216 52.305 51 73 58 51 73 51 1 1 1 1 1 1 17654 9807 772 9713 15352;15353 20050;20051 20050 2 ITVTSEVPFSK Unmodified 1206.6496 0.64960415 1017 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 0 7.5 0.5 1 1 60.362 60.362 3 0.00050793 17568 TMT1-6 91.855 83.944 269.63 326.2 212.38 227.54 304.23 339.9 254 327 225 225 312 327 3 3 3 3 3 3 51645 9808 1017 9714 15354;15355 20052;20053;20054 20052 3 ITVVGVGAVGMACAISILMK Unmodified 1989.0825 0.082496122 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 9 0 4 98.837 98.837 3;4 2.7388E-18 30641 TMT1-8 104.03 84.188 30.458 52.162 66.547 35.501 51.769 53.955 29 52 66 37 52 52 3 3 3 3 2 3 4876.1 9809 385 9715 15356;15357;15358;15359 20055;20056;20057;20058;20059 20059 5 ITVVGVGQVGMACAISILGK Unmodified 1972.0849 0.084938963 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 9 0 3 86.948 86.948 3;4 7.1811E-19 26378 TMT1-8 110.6 84.168 426.78 626.06 417.11 408.08 517.07 540.63 403 622 439 405 530 521 9 9 9 9 9 9 73861 9810 527 9716 15360;15361;15362 20060;20061;20062;20063;20064;20065;20066;20067;20068;20069 20062 10 ITVVGVGQVGMACAISILGK Oxidation (M) 1988.0799 0.079853586 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 0 9 0 1 76.729 76.729 3 5.1705E-05 22316 TMT1-8 61.862 35.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9811 527 9716 15363 20070 20070 85 1 ITWSIIR Unmodified 887.52289 0.52288749 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 9 0 1 62.132 62.132 2 0.026052 16524 TMT1-8 91.626 12.481 146.13 164.7 187.78 136.9 145.93 197.31 138 167 189 138 152 189 1 1 1 1 1 1 39158 9812 1057 9717 15364 20071 20071 1 ITYGETGGNSPVQEFTVPGSK Unmodified 2167.0433 0.043327963 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 6 0 1 62.945 62.945 3 4.6401E-06 19254 TMT1-5 62.999 47.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9813 442 9718 15365 20072 20072 1 IVADFSASVK Unmodified 1035.5601 0.56006086 1209 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 0 7 0 2 60.502 60.502 2;3 0.00066753 17669 TMT1-6 96.143 50.142 177.14 217.34 159.83 155.54 114.98 220.58 167 218 167 153 124 210 2 2 2 2 2 2 15462 9814 1209 9719 15366;15367 20073;20074 20074 2 IVADKDYSVTANSK Unmodified 1509.7675 0.76748745 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 1 5 2.35 1 2 1 46.602 46.602 3;4 2.9996E-15 12154 TMT1-6 140.93 100.65 2457.3 3813.8 3236 2824.3 3227.1 3891.6 2326 3791 3330 2816 3337 3737 6 6 6 6 6 6 454300 9815 527 9720 15368;15369;15370;15371 20075;20076;20077;20078;20079;20080 20079 6 IVADQLCAK Unmodified 1016.5325 0.5324659 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 0 6 0 1 50.546 50.546 2 0.012375 14364 TMT1-5 85.666 49.271 240.03 401.96 255.17 237.05 360.72 357.48 227 397 269 237 367 345 1 1 1 1 1 1 18705 9816 1292 9721 15372 20081 20081 1 IVAEEFLK Unmodified 947.53278 0.53278348 1351 P59998;P59998-3;P59998-4 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 5.5 0.5 1 1 63.982 63.982 2 0.0025466 19584 TMT1-5 136.16 73.313 1395.5 1897.8 1713.4 1572.6 1846.2 1948.2 1319 1899 1760 1564 1898 1877 4 4 4 4 4 4 371250 9817 1351 9722 15373;15374 20082;20083;20084;20085 20084 4 IVAFADAAVEPIDFPIAPVYAASMVLK Unmodified 2817.5027 0.50267591 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 8 0 1 103.01 103.01 4 4.2006E-08 33299 TMT1-7 71.656 45.446 7.3961 15.356 6.2912 7.276 0 11.726 7 15 7 7 0 11 1 1 1 1 0 1 1730.2 9818 878 9723 15375 20086 20086 1 IVALFPK Unmodified 786.50036 0.50036114 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 9 0 1 65.732 65.732 2 0.027024 18034 TMT1-8 91.093 44.048 153.15 204.91 235.94 142.36 226.04 202.49 145 206 236 147 229 196 1 1 1 1 1 1 27635 9819 515 9724 15376 20087 20087 1 IVAPISDSPKPPPQR Unmodified 1600.8937 0.89369102 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 1 7.33 0.471 2 1 45.581 45.581 3;4 1.825E-07 11789 TMT1-6 108.23 81.606 292.29 321.95 374.96 273.05 333.29 346.53 276 327 377 276 342 334 4 4 4 4 4 4 29322 9820 349 9725 15377;15378;15379 20088;20089;20090;20091 20089 4 IVAQVWPFLGQYMEK Unmodified 1807.9331 0.93311299 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 1 87.787 87.787 3 0.002573 26563 TMT1-8 55.975 35.869 92.25 139.49 66.819 74.804 53.294 114.67 87 138 73 73 58 109 1 1 1 1 1 1 11966 9821 2525 9726 15380 20092 20092 1 IVATKPLYVALAQR Unmodified 1541.9293 0.92934824 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 1 9 0 1 60.104 60.104 3 7.3959E-05 15725 TMT1-8 83.087 59.711 199.07 299.37 192.16 191.33 201.77 265.01 188 297 203 189 210 254 2 2 2 2 2 2 30316 9822 662;2634 9727 15381 20093;20094 20093 2 IVATLPYIK Unmodified 1016.627 0.62701821 969 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 0 9 0 1 65.935 65.935 2 0.0090434 18095 TMT1-8 94.114 47.744 37.84 81.51 63.335 42.952 72.589 52.295 36 80 65 44 73 51 1 1 1 1 1 1 5721.8 9823 969 9728 15382 20095 20095 1 IVAVTGAEAQK Unmodified 1085.6081 0.60807369 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 47.133 47.133 2 0.00019786 13014 TMT1-5 84.054 62.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9824 1184 9729 15383 20096 20096 1 IVDDWANDGWGLK Unmodified 1487.7045 0.70449327 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 6 0 1 74.324 74.324 2 6.9046E-13 23699 TMT1-5 163.12 127.17 146.27 133.79 189.96 129.66 117.25 158.69 138 138 189 131 123 152 2 2 2 2 2 2 31150 9825 920 9730 15384 20097;20098 20097 2 IVDDWANDGWGLKK Unmodified 1615.7995 0.79945628 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 7 0 2 66.423 66.423 3;4 3.0111E-10 19997 TMT1-6 122.97 98.678 666.47 1017.4 736.98 664.32 756.75 1107.3 630 1010 768 661 789 1059 2 2 2 2 2 2 117430 9826 920 9731 15385;15386 20099;20100 20099 2 IVDGPDPENIILILK Unmodified 1647.9447 0.94472354 254 O75165 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 0 0 0 0 0 6 0 1 86.65 86.65 3 0.0035718 28460 TMT1-5 60.55 37.412 23.344 28.955 19.534 54.212 19.479 30.358 22 29 22 51 22 29 1 1 1 1 1 1 4173.2 9827 254 9732 15387 20101 20101 1 IVDIIDTTGSGDVNTATEVEPK Unmodified 2273.1275 0.12745152 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 4 0 1 69.844 69.844 4 2.8416E-09 22016 TMT1-3 85.61 68.241 122.78 167.03 142.16 116.1 117.58 167.2 116 167 146 116 123 160 2 2 2 2 2 2 19753 9828 934 9733 15388 20102;20103 20102 2 IVDILYATDEGFVIPDEGGPQEEQEEY Unmodified 3054.387 0.38697327 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 4.33 0.471 2 1 99.987 99.987 3;4 3.6986E-08 31492 TMT1-3 73.981 71.1 14.885 10.463 14.198 8.1161 1.7113 12.743 14 11 14 8 2 12 4 4 3 3 1 3 8322.3 9829 1868 9734 15389;15390;15391 20104;20105;20106;20107 20106 4 IVDQIRPDR Unmodified 1110.6146 0.61455605 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 1 5 0 1 38.748 38.748 3 0.0016083 9527 TMT1-4 99.013 42.891 68.628 102.21 101.07 63.29 92.066 97.577 65 102 102 65 94 94 1 1 1 1 1 1 14815 9830 764;2321 9735 15392 20108 20108 1 IVDVIGEK Unmodified 871.50148 0.50148335 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 6 0 1 57.856 57.856 2 0.030261 17238 TMT1-5 81.594 27.186 84.721 116.21 89.648 104.62 81.224 144.79 80 116 94 102 87 138 1 1 1 1 1 1 8655.7 9831 695 9736 15393 20109 20109 1 IVEAAENEYQTAISENYQTMSDTTFK Unmodified 2982.3441 0.34406259 1143 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 0 4 0 1 79.241 79.241 5 0.00066148 25798 TMT1-3 45.305 32.117 69.223 33.712 59.129 28.189 57.269 61.26 65 37 58 30 58 59 2 2 2 2 2 2 3981.3 9832 1143 9737 15394 20110;20111 20111 2 IVEDAVEQGVLK Unmodified 1298.7082 0.70818166 2089 Q7Z3D6-5;Q7Z3D6-3;Q7Z3D6;Q7Z3D6-2;Q7Z3D6-4 C14orf159 UPF0317 protein C14orf159, mitochondrial yes no 0 0 0 0 0 4 0 1 64.695 64.695 3 0.0063491 20083 TMT1-3 63.473 32.645 22.658 105.84 69.602 65.551 71.55 52.324 22 102 73 65 73 51 1 1 1 1 1 1 5194.3 9833 2089 9738 15395 20112 20112 1 IVEDEPNKICEADR Unmodified 1686.7883 0.78829925 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 1 3 0 1 44.217 44.217 3 0.0065509 12989 TMT1-2 62.69 45.471 77.171 101.51 108.65 63.109 77.672 90.526 73 102 109 65 80 87 1 1 1 1 1 1 9694.6 9834 1310 9739 15396 20113 20113 1 IVEEEAQEDLEGLR Unmodified 1628.7893 0.78934511 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 2 0 1 62.471 62.471 2 1.7469E-16 19824 TMT1-1 149.41 116.18 15.777 29.315 28.562 21.945 21.219 22.846 15 29 29 22 22 22 1 1 1 1 1 1 6309.4 9835 1633 9740 15397 20114 20114 1 IVEEPQSNR Unmodified 1070.5356 0.53563702 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 2 0 1 34.646 34.646 2 0.0003333 8842 TMT1-1 101.65 72.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9836 367 9741 15398 20115 20115 1 IVEFLQSFDEITAMTGDGVNDAPALK Unmodified 2780.3579 0.35786216 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 7 0 1 100.77 100.77 4 9.3238E-08 32791 TMT1-6 67.33 54.653 23.318 28.885 23.868 29.892 20.341 37.796 22 29 25 29 22 36 1 1 1 1 1 1 6986.5 9837 748 9742 15399 20116 20116 1 IVEGILK Unmodified 770.49019 0.49019038 1846 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 0 7 0 1 58.642 58.642 2 0.026016 16895 TMT1-6 92.925 25.869 237.82 342.57 315.84 194.12 184.28 405.15 225 342 320 198 198 385 1 1 1 1 1 1 73757 9838 1846 9743 15400 20117 20117 1 IVEGISQPIWLVSDTR Unmodified 1811.9781 0.97814893 1832 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 0 7 0 1 75.937 75.937 3 0.01062 23790 TMT1-6 50.653 31.831 38.107 43.397 50.804 35.524 42.31 60.621 36 44 51 36 44 58 1 1 1 1 1 1 6911.5 9839 1832 9744 15401 20118 20118 1 IVEHAEK Unmodified 824.43922 0.43921744 2087 Q7Z2Z2;Q7Z2Z2-2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 30.83 30.83 3 0.0074311 6706 TMT1-3 86.953 41.236 61.299 94.596 76.955 81.27 84.166 90.34 58 94 80 80 87 87 1 1 1 1 1 1 4116.5 9840 2087 9745 15402 20119 20119 1 IVEIGDENATLDGTDVLFTGR Unmodified 2234.1067 0.1066565 376 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes yes 0 0 0 0 0 4 0 1 77.588 77.588 3 2.5966E-10 25102 TMT1-3 95.361 78.962 54.303 42.578 34.492 36.635 34.946 29.917 51 44 36 36 36 29 1 1 1 1 1 1 13388 9841 376 9746 15403 20120 20120 1 IVEIPFNSTNK Unmodified 1260.6714 0.67140222 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 7 0 1 62.48 62.48 3 0.00035372 18426 TMT1-6 96.113 77.846 68.848 86.632 77.39 81.373 77.345 75.611 65 87 80 80 80 73 1 1 1 1 1 1 13671 9842 481 9747 15404 20121 20121 1 IVEMSTSK Unmodified 893.45282 0.4528186 1477 P63241;P63241-2;Q9GZV4 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 0 7 0 1 46.938 46.938 2 0.028654 12358 TMT1-6 82.75 31.415 68.622 86.005 115.82 93.869 104.75 144.12 65 87 116 94 109 138 1 1 1 1 1 1 15678 9843 1477 9748 15405 20122 20122 1 IVENLQSFNEITAMTGDGVNDAPALK Unmodified 2746.3484 0.34836011 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5.5 0.5 1 1 81.201 81.201 4 0.00012699 26214 TMT1-5 52.97 37.378 93.061 201.29 58.558 89.75 98.419 120.85 88 196 65 87 102 116 2 2 1 2 2 2 28640 9844 2344 9749 15406;15407 20123;20124 20124 2 IVENSDAVTEILNNAELLK Unmodified 2084.1001 0.10011456 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 5 0 1 85.498 85.498 3 1.7374E-07 27895 TMT1-4 69.763 50.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9845 1886 9750 15408 20125 20125 1 IVEPYIAWGYPNLK Unmodified 1661.8817 0.88172935 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 0 8.33 0.471 2 1 76.683 76.683 2;4 1.0878E-12 24137 TMT1-7 119.53 71.969 77.351 102.01 77.844 49.503 85.077 106.3 73 102 80 51 87 102 2 2 2 2 2 2 13297 9846 775 9751 15409;15410;15411 20126;20127;20128 20127 3 IVEQINR Unmodified 870.49232 0.49231565 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 4 0 1 39.301 39.301 2 0.020741 9999 TMT1-3 97.033 33.731 517.9 382.15 637.47 491.63 664.75 697.38 488 402 633 496 680 672 1 1 1 1 1 1 183110 9847 2112 9752 15412 20129 20129 1 IVEQINRK Unmodified 998.58728 0.58727866 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 7 0 1 38.598 38.598 3 0.0069237 9035 TMT1-6 87.476 34.76 1163.9 1630.9 1554.3 1544.9 1323.2 1800 1101 1631 1596 1521 1392 1724 1 1 1 1 1 1 100210 9848 2112 9753 15413 20130 20130 1 IVEVEQDNK Unmodified 1072.5401 0.5400537 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 2 0 1 45.679 45.679 3 0.0046334 13259 TMT1-1 76.465 41.662 46.62 50.169 56.91 58.384 86.025 66.835 44 51 58 58 87 65 1 1 1 1 1 1 7282.1 9849 2309 9754 15414 20131 20131 1 IVEVLLMK Unmodified 943.57763 0.57762518 1056 P38159;P38159-2;P38159-3;O75526 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 0 0 0 0 0 8.5 0.5 1 1 76.608 76.608 2 0.0059255 24073 TMT1-7 112.17 70.062 253.22 349.08 246.2 313.83 258.59 426.48 239 348 261 305 275 407 4 4 4 4 4 4 33307 9850 1056 9755 15415;15416 20132;20133;20134;20135 20132 4 IVEYEKEMEK Unmodified 1296.6272 0.62715415 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 1 5 0 1 50.121 50.121 4 0.031565 14052 TMT1-4 51.998 37.122 169.41 252.86 166.48 129.34 208.59 271.21 160 251 174 131 214 260 1 1 1 1 1 1 6374.1 9851 316 9756 15417 20136 20136 1 IVFDSIDNLEAAPHDIGYVK Unmodified 2215.1161 0.11609898 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 5 0 1 74.147 74.147 3 9.5055E-07 23424 TMT1-4 79.465 64.537 46.431 80.942 62.616 58.886 41.236 60.651 44 80 65 58 44 58 1 1 1 1 1 1 14130 9852 2884 9757 15418 20137 20137 1 IVFENPDPSDGFVLIPDLK Unmodified 2114.0936 0.093572619 2379 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 0 6 0 1 88.773 88.773 3 6.7799E-07 29304 TMT1-5 86.453 72.199 38.009 71.186 43.708 35.936 42.914 42.481 36 70 46 36 44 41 2 2 2 2 2 2 10386 9853 2379 9758 15419 20138;20139 20138 2 IVFSPEEAK Unmodified 1018.5335 0.53351176 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 6 0 1 55.063 55.063 2 0.0011055 16128 TMT1-5 124.23 72.376 130.34 135.37 159.92 99.172 147.96 188.72 123 138 160 102 152 181 1 1 1 1 1 1 12189 9854 2831 9759 15420 20140 20140 1 IVFVPGCSIPLTIVK Unmodified 1641.9528 0.9527858 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 80.857 80.857 3 1.8839E-05 23948 TMT1-8 76.262 51.566 61.48 95.098 46.195 66.696 84.836 90.321 58 94 51 65 87 87 2 2 2 2 2 2 14285 9855 1296 9760 15421 20141;20142 20142 2 IVGAMVQIITYR Unmodified 1362.7693 0.76934213 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 9 0 1 77.617 77.617 2 0.0031356 22647 TMT1-8 80.737 57.132 69.059 48.366 74.228 33.846 57.302 52.731 65 51 73 36 58 51 1 1 1 1 1 1 9506.9 9856 489 9761 15422 20143 20143 1 IVGCICEEDNTSVVWFWLHK Unmodified 2491.1664 0.16643676 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 0 8 0 1 81.649 81.649 4 1.1805E-05 26089 TMT1-7 74.428 65.332 115.62 129.68 113.97 71.277 91.389 137.04 109 131 116 73 95 131 2 2 2 2 2 2 16050 9857 633 9762 15423 20144;20145 20145 2 IVGCSVHK Unmodified 898.46947 0.46947171 547 P07910-2;P07910-4;P07910;Q86SE5;Q86SE5-3 HNRNPC;RALYL Heterogeneous nuclear ribonucleoproteins C1/C2;RNA-binding Raly-like protein yes no 0 0 0 0 0 8 0 1 35.775 35.775 3 0.0010437 7997 TMT1-7 118.32 60.131 751.74 1016.4 833.97 810.54 1043 1470.1 710 1016 864 805 1081 1407 1 1 1 1 1 1 78926 9858 547 9763 15424 20146 20146 1 IVGLQYK Unmodified 819.48544 0.48543935 1574 Q02880-2;Q02880;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha yes no 0 0 0 0 0 9 0 1 53.465 53.465 2 0.0061998 13166 TMT1-8 100.82 62.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9859 1574 9764 15425 20147 20147 1 IVGNLLYYR Unmodified 1109.6233 0.62332982 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 9 0 1 63.584 63.584 2 0.00041574 17179 TMT1-8 133.79 94.955 84.374 131.44 135.08 132.94 116.81 167.23 80 131 138 131 123 160 1 1 1 1 1 1 40670 9860 1723 9765 15426 20148 20148 1 IVGPSGAAVPCK Unmodified 1154.6118 0.61177885 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.92 1 1 2 49.006 49.006 2;3 4.2751E-08 13300 TMT1-7 132.01 100.94 3341.8 4226.4 4457.5 2875.8 4172.9 4578.8 3159 4254 4488 2946 4266 4407 6 6 6 6 6 6 1054700 9861 831 9766 15427;15428;15429;15430 20149;20150;20151;20152;20153;20154 20154 6 IVGPSGAAVPCKVEPGLGADNSVVR Unmodified 2448.2795 0.27949268 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 7 0 1 56.338 56.338 4 4.7916E-32 15997 TMT1-6 141.91 124.09 356.03 394.35 242.2 282.51 251.05 474.67 335 397 259 276 268 452 2 2 2 2 2 2 106930 9862 831 9767 15431 20155;20156 20155 2 IVGWYHTGPK Unmodified 1156.6029 0.60292873 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 9 0 1 48.735 48.735 3 0.0047103 11236 TMT1-8 66.692 49.666 99.709 91.348 116.35 71.406 77.034 98.006 94 94 116 73 80 94 1 1 1 1 1 1 22756 9863 1251 9768 15432 20157 20157 1 IVGYVLAK Unmodified 861.53239 0.53238955 1082 P41227-2;P41227;Q9BSU3 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 0 0 0 0 0 9 0 1 62.672 62.672 2 0.036827 16818 TMT1-8 69.234 32.259 146.49 158.16 131.78 163.99 161.19 173.42 138 160 138 160 167 167 1 1 1 1 1 1 12089 9864 1082 9769 15433 20158 20158 1 IVHELNTTVPTASFAGK Unmodified 1783.9468 0.9468488 1944 Q4VC31 CCDC58 Coiled-coil domain-containing protein 58 yes yes 0 0 0 0 0 8 0 1 55.933 55.933 3 5.4165E-05 15924 TMT1-7 78.234 54.192 54.163 42.187 58.44 33.941 102.3 82.361 51 44 58 36 102 80 1 1 1 1 1 1 5145.1 9865 1944 9770 15434 20159 20159 1 IVHEYIGGYIFLSTR Unmodified 1766.9356 0.93555583 2112 Q86UX7-2;Q86UX7;Q9BQL6-3;Q9BQL6 FERMT3;FERMT1 Fermitin family homolog 3;Fermitin family homolog 1 yes no 0 0 0 0 0 8.8 0.4 1 4 66.093 66.093 3 1.5768E-07 17988 TMT1-8 100.56 73.886 345.19 448.94 393.6 382 409.37 422.18 326 450 406 378 422 407 6 6 6 6 6 6 86757 9866 2112 9771 15435;15436;15437;15438;15439 20160;20161;20162;20163;20164;20165;20166;20167 20162 8 IVIDFDSINSR Unmodified 1277.6616 0.66156582 992 P32321;P32321-2 DCTD Deoxycytidylate deaminase yes no 0 0 0 0 0 6 0 1 66.735 66.735 2 0.0029431 20749 TMT1-5 64.73 26.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9867 992 9772 15440 20168 20168 1 IVIEEYVQQLSGYFLQLK Unmodified 2169.1722 0.17215729 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 9 0 1 104.91 104.91 4 0.026957 32853 TMT1-8 34.094 15.729 14.671 36.851 27.765 29.813 12.188 31.632 14 36 29 29 14 30 2 2 2 2 2 2 2891.5 9868 855 9773 15441 20169;20170 20170 2 IVIGYQSHADTATK Unmodified 1502.7729 0.77290718 513 P06730;P06730-3;P06730-2 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 0 6.5 0.5 1 1 44.452 44.452 3 3.3893E-14 11814 TMT1-5 122.63 85.204 233.09 246.48 290.93 106.03 181.9 196.28 220 251 288 116 185 189 1 1 1 1 1 1 15699 9869 513 9774 15442;15443 20171;20172 20171 2 IVILEYQPSK Unmodified 1188.6754 0.67542497 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 7.33 0.471 2 1 64.142 64.142 2;3 0.00061068 19094 TMT1-6 112.11 62.571 130.63 136.16 111.44 117.64 133.47 159.29 123 138 116 116 138 153 2 2 2 2 2 2 18754 9870 1850 9775 15444;15445;15446 20173;20174;20175 20173 3 IVILPDYLEIAR Unmodified 1413.8232 0.82315184 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 80.097 80.097 2 4.9375E-05 25307 TMT1-6 110.38 62.443 91.985 147.39 104.75 87.173 89.083 182.94 87 146 109 87 95 174 2 2 2 2 2 2 33053 9871 1122 9776 15447 20176;20177 20176 2 IVITDCGQLS Unmodified 1104.5485 0.5485099 958 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 0 5 0 1 63.047 63.047 2 0.0036897 19174 TMT1-4 95.352 76.081 169.76 209.57 145.22 154.78 143.77 266.66 160 210 153 152 153 254 2 2 2 2 2 2 69593 9872 958 9777 15448 20178;20179 20179 2 IVIVGDGGCGK Unmodified 1073.5539 0.55392963 2679 Q9HBH0;Q9HBH0-2 RHOF Rho-related GTP-binding protein RhoF yes no 0 0 0 0 0 7 0 1 51.997 51.997 2 1.0136E-06 14311 TMT1-6 142.92 74.699 53.758 79.916 94.476 48.629 78.851 75.568 51 80 94 51 80 73 1 1 1 1 1 1 7568.7 9873 2679 9778 15449 20180 20180 1 IVLANDPDADR Unmodified 1197.599 0.59896556 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 0 2.5 0.5 1 1 47.631 47.631 2 1.3019E-05 14231 TMT1-2 123.79 73.979 170.21 133.1 134.59 131.93 171.79 121.08 160 138 138 131 174 116 2 2 2 2 2 1 30376 9874 2407 9779 15450;15451 20181;20182 20182 2 IVLDNSVFSEHR Unmodified 1414.7205 0.72047768 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 7 1 1 1 54.245 54.245 3 3.4863E-09 15726 TMT1-5 142.91 98.27 169.72 178.15 178.99 143.51 229.11 233.31 160 181 182 145 233 225 2 2 2 2 2 2 89182 9875 1540 9780 15452;15453 20183;20184 20183 2 IVLDSDAAEYGGHQR Unmodified 1629.7747 0.7746981 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 3 0 1 44.621 44.621 3 2.884E-05 13189 TMT1-2 89.624 54.587 61.328 87.121 78.479 57.118 85.02 97.778 58 87 80 58 87 94 1 1 1 1 1 1 23161 9876 1583 9781 15454 20185 20185 1 IVLELFADIVPK Unmodified 1355.8064 0.80643914 1626 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 0 8.5 0.5 1 1 97.365 97.365 2;3 3.731E-05 29907 TMT1-8 94.363 57.171 0 15.704 15.288 0 0 15.99 0 15 15 0 0 15 0 1 1 0 0 1 1065.6 9877 1626 9782 15455;15456 20186;20187 20187 2 IVLFDTLLEEYSVLNK Unmodified 1895.0292 0.029181449 306 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 0 8 0 1 98.404 98.404 3 4.5556E-12 32122 TMT1-7 126.71 106.28 47.682 42.51 65.276 50.805 55.716 76.228 45 44 65 51 58 73 2 2 2 2 2 2 9228.6 9878 306 9783 15457 20188;20189 20188 2 IVLIGNAGVGK Unmodified 1039.639 0.63897988 1873 Q15771;Q15771-2 RAB30 Ras-related protein Rab-30 yes no 0 0 0 0 0 9 0 1 60.279 60.279 2 1.1566E-10 15836 TMT1-8 138.1 94.851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9879 1873 9784 15458 20190 20190 1 IVLLDSSLEYK Unmodified 1278.7071 0.70711903 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 7 0 1 71.047 71.047 3 1.849E-06 21859 TMT1-6 125.74 107.47 254.36 266.08 306.06 199.11 240.56 252.17 240 271 307 203 247 243 2 2 2 2 2 2 55031 9880 1178 9785 15459 20191;20192 20192 2 IVLLDVPVR Unmodified 1022.6488 0.64881629 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6.6 2.87 1 1 2 1 67.895 67.895 2 0.00016722 20588 TMT1-7 147.52 91.802 7055.8 8502 8351.9 5457.4 8051.3 8988 6662 8569 8448 5587 8232 8647 8 8 8 8 8 8 1789000 9881 565 9786 15460;15461;15462;15463;15464 20193;20194;20195;20196;20197;20198;20199;20200;20201 20198 9 IVLLDVPVRAEAQVELR Unmodified 1919.1204 0.12039649 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 7 0 1 67.761 67.761 3 1.0652E-07 20517 TMT1-6 101.78 61.505 168.64 210.59 152.02 146.71 144.16 235.74 159 211 159 145 152 225 2 2 2 2 2 2 32924 9882 565 9787 15465 20202;20203 20202 2 IVMFTIDIGEAPK Unmodified 1432.7636 0.76358805 1842 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 yes yes 0 0 0 0 0 8 0 1 79.181 79.181 3 0.00035386 25035 TMT1-7 82.543 58.557 30.505 66.324 46.621 99.391 30.448 76.949 29 65 51 94 36 73 1 1 1 1 1 1 7703.8 9883 1842 9788 15466 20204 20204 1 IVNGWQVEEADDWLR Unmodified 1828.8744 0.87441214 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 5 0 1 74.985 74.985 3 0.008787 23776 TMT1-4 52.823 42.766 38.243 43.776 27.59 21.747 34.824 53.372 36 44 29 22 36 51 1 1 1 1 1 1 8447.5 9884 648 9789 15467 20205 20205 1 IVNLACK Unmodified 816.45276 0.45275902 38 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 0 8 0 1 48.03 48.03 2 0.040209 12856 TMT1-7 86.113 10.013 169.68 221.21 149.39 215.62 150.21 271.81 160 221 160 208 162 259 1 1 1 1 1 1 12463 9885 38 9790 15468 20206 20206 1 IVNQPSSLFGSK Unmodified 1275.6823 0.68230126 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 1 59.271 59.271 3 0.00077384 15436 TMT1-8 70.563 43.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9886 2100 9791 15469 20207 20207 1 IVNSAQTGSFK Unmodified 1150.5982 0.59823728 319 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 0 8 0 1 47.18 47.18 2 1.6038E-11 12468 TMT1-7 169.58 92.753 91.906 146.09 118.97 109.82 118.42 151.19 87 145 123 109 123 145 1 1 1 1 1 1 21220 9887 319 9792 15470 20208 20208 1 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR Unmodified 4201.8397 0.83970625 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 6 0 1 83.831 83.831 4 2.4448E-07 27453 TMT1-5 54.745 53.162 15.95 22.241 5.4552 15.803 14.173 23.048 15 22 7 15 15 22 1 1 1 1 1 1 5401.5 9888 1149 9793 15471 20209 20209 1 IVNTPFQVLMNSEK Unmodified 1618.8389 0.83887826 2299 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 0 0 9 0 1 74.628 74.628 3 9.0106E-05 21452 TMT1-8 73.022 46.875 37.598 104.58 84.398 73.45 69.611 98.218 36 102 87 73 73 94 1 1 1 1 1 1 4980.2 9889 2299 9794 15472 20210 20210 1 IVPEWQDYDQEIK Unmodified 1661.7937 0.7937022 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 4.5 0.5 1 1 67.655 67.655 2 4.0444E-05 21277 TMT1-3 82.489 54.285 61.821 42.083 33.757 52.946 41.766 53.174 58 44 36 51 44 51 1 1 1 1 1 1 8296.4 9890 2789 9795 15473;15474 20211;20212 20211 2 IVPGQFLAVDPK Unmodified 1282.7285 0.72852317 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 8 0 1 68.575 68.575 3 0.00052819 20873 TMT1-7 84.289 69.728 77.115 124.02 98.969 55.738 93.423 98.604 73 123 101 58 95 95 2 2 2 2 2 2 16444 9891 1850 9796 15475 20213;20214 20213 2 IVPNVLLEQGK Unmodified 1208.7129 0.71287311 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 7.67 0.471 1 2 65.283 65.283 2;3 7.3696E-08 19561 TMT1-6 154.24 104.11 436.83 750.96 606.32 484.7 550.72 767.79 414 743 624 486 573 735 4 4 4 4 4 4 137200 9892 271 9797 15476;15477;15478 20215;20216;20217;20218 20215 4 IVPVEITISLLK Unmodified 1323.8377 0.83773927 953 P30085-3;P30085 CMPK1 UMP-CMP kinase yes no 0 0 0 0 0 9 0 1 86.701 86.701 3 1.5504E-05 26129 TMT1-8 97.734 65.128 99.297 160.36 127.08 101.92 105.74 104.65 94 159 131 102 109 101 2 2 2 2 2 2 17806 9893 953 9798 15479 20219;20220 20219 2 IVPYSELVK Unmodified 1046.6012 0.60119739 2935 Q9UPN3;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 7 0 1 61.916 61.916 2 0.0036519 18231 TMT1-6 69.954 26.707 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9894 2935 9799 15480 20221 20221 1 IVQAEGEAEAAK Unmodified 1214.6143 0.61428128 2479 Q99623 PHB2 Prohibitin-2 yes yes 0 0 0 0 0 2.75 0.829 2 1 1 45.713 45.713 2;3 1.1363E-07 12367 TMT1-3 120.57 85.881 422.39 550.52 497.86 373.34 480.94 542.73 399 552 508 377 494 522 5 5 5 5 5 5 69219 9895 2479 9800 15481;15482;15483;15484 20222;20223;20224;20225;20226 20226 5 IVQIPFCGEIDCEDWIKK Unmodified 2249.0861 0.086061175 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 1 7 0 1 74.848 74.848 4 0.031778 23269 TMT1-6 37.042 17.832 54.172 49.769 50.352 35.27 57.237 52.733 51 51 51 36 58 51 1 1 1 1 1 1 5829.6 9896 543 9801 15485 20227 20227 1 IVQMTEAEVR Unmodified 1174.6016 0.6016081 1414 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 0 0 4 0 1 51.265 51.265 2 0.00077813 14768 TMT1-3 107.08 67.754 145.92 223.49 172.41 208.53 163.29 266.1 138 222 181 203 174 254 1 1 1 1 1 1 29081 9897 1414 9802 15486 20228 20228 1 IVQTYHVNMAGTNPYTTITPQEINGKWDHVR Unmodified 3582.7678 0.76778559 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 7 0 1 60.378 60.378 5 4.3067E-06 17612 TMT1-6 58.712 53.656 69.011 71.977 62.333 74.771 69.257 106.76 65 73 65 73 73 102 1 1 1 1 1 1 14773 9898 672 9803 15487 20229 20229 1 IVQVALNGLENILR Unmodified 1550.9144 0.91442646 1262;232 O60684;O15131;P52294 KPNA6;KPNA5;KPNA1 Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 0 0 0 0 0 9 0 1 92.903 92.903 3 4.5653E-10 28492 TMT1-8 111.31 87.564 15.832 37.021 12.903 23.021 13.584 30.526 15 36 15 22 15 29 1 1 1 1 1 1 3642.7 9899 232;1262 9804 15488 20230 20230 1 IVSAQSLAEDDVE Unmodified 1374.6515 0.65145464 1849 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 0 0 0 0 0 2 0 1 63.489 63.489 2 8.2612E-08 20221 TMT1-1 123.51 106.19 15.81 21.851 29.359 14.106 28.652 30.096 15 22 29 15 29 29 1 1 1 1 1 1 18942 9900 1849 9805 15489 20231 20231 1 IVSGIITPIHEQWEK Unmodified 1748.9461 0.94612052 2296 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 0 0 0 0 0 7 0 1 62.642 62.642 3 1.48E-06 18516 TMT1-6 81.327 61.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9901 2296 9806 15490 20232 20232 1 IVSGKDYNVTANSK Unmodified 1494.7678 0.7678218 385 P00338;P00338-3;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 7 0 1 44.386 44.386 3 0.0047978 11300 TMT1-6 64.52 43.567 115.91 138.04 58.536 65.719 97.655 175.24 109 138 65 65 102 167 1 1 1 1 1 1 7723 9902 385 9807 15491 20233 20233 1 IVSLFAEHNDLQYAAPGGLIGVGTK Unmodified 2569.354 0.35403784 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 8 0 1 75.942 75.942 3 2.974E-14 23825 TMT1-7 94.73 73.131 30.73 44.283 27.592 21.869 28.295 30.107 29 44 29 22 29 29 1 1 1 1 1 1 9539.7 9903 1077 9808 15492 20234 20234 1 IVSNVPQLEFLNLSSNPLNLSVLER Unmodified 2794.5229 0.52289408 1965 Q5QJ74 TBCEL Tubulin-specific chaperone cofactor E-like protein yes yes 0 0 0 0 0 9 0 1 92.955 92.955 3 0.0045184 28513 TMT1-8 39.153 25.561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9904 1965 9809 15493 20235 20235 1 IVSQLLTLMDGLK Oxidation (M) 1445.8164 0.8163519 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 0 9 0 1 79.077 79.077 3 0.023828 23235 TMT1-8 50.088 28.581 46.784 43.068 35.508 14.02 13.741 37.984 44 44 36 15 15 36 1 1 1 1 1 1 3293.6 9905 1311 9810 15494 20236 20236 210 1 IVSQLLTLMDGLK Unmodified 1429.8214 0.82143728 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 9 0 1 97.349 97.349 3 1.4831E-16 30037 TMT1-8 152.16 115.32 370.52 400.5 325.13 329.71 268.15 553.06 349 405 338 324 289 526 3 3 3 3 3 3 57625 9906 1311 9810 15495 20237;20238;20239 20238 3 IVSSASTDLQDYTYYFVPAPWLSVK Unmodified 2849.4164 0.41636332 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 9 0 1 94.261 94.261 4 1.9942E-22 28979 TMT1-8 103.84 83.026 61.038 78.759 134.3 54.079 69.674 91.82 58 80 131 58 72 88 2 2 2 2 2 2 8742 9907 369 9811 15496 20240;20241 20240 2 IVSWSQVGVEPSIMGIGPIPAIK Unmodified 2377.3079 0.30793927 2559 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 0 9 0 1 87.992 87.992 3 1.6131E-10 26646 TMT1-8 78.413 63.941 38.486 28.261 0 15.853 28.829 22.629 36 29 0 15 29 22 1 1 0 1 1 1 5644.9 9908 2559 9812 15497 20242 20242 1 IVTCGTDR Unmodified 920.43857 0.43856552 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 4.5 0.5 1 1 32.938 32.938 2 0.00078967 7487 TMT1-3 148.04 103.65 139.02 166.35 117.53 109.33 148.81 150.32 131 167 123 109 152 145 1 1 1 1 1 1 29192 9909 128 9813 15498;15499 20243;20244 20243 2 IVTDRETGSSK Unmodified 1191.6095 0.60953025 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 5 0 2 32.3 32.3 3;4 0.032047 6941 TMT1-4 53.967 38.594 207.38 360.62 186.67 231.06 199.06 290.67 196 355 203 225 210 278 2 2 2 2 2 2 46663 9910 786 9814 15500;15501 20245;20246 20245 2 IVTDSDSKTEELR Unmodified 1491.7417 0.74166663 2628 Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 1 4 0 1 42.886 42.886 3 0.00255 11465 TMT1-3 59.67 49.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9911 2628 9815 15502 20247 20247 1 IVTLTPFCTIANK Unmodified 1476.801 0.80103619 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 1 71.853 71.853 3 0.00020809 20363 TMT1-8 84.169 53.731 77.307 101.89 85.473 48.457 116.55 74.492 73 102 87 51 116 73 1 1 1 1 1 1 6115.7 9912 2064 9816 15503 20248 20248 1 IVTSASTDLQDYTYYFVPAPWLSVK Unmodified 2863.432 0.43201339 335 O94973-2;O94973;O94973-3 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 0 9 0 1 94.714 94.714 4 0.0008972 29162 TMT1-8 45.972 33.417 15.899 22.099 14.143 15.285 14.196 23.047 15 22 15 15 15 22 1 1 1 1 1 1 4667.1 9913 335 9817 15504 20249 20249 1 IVTSTYK Unmodified 810.44872 0.4487195 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 0 7 0 1 43.751 43.751 2 0.016353 11012 TMT1-6 100.45 51.947 68.567 117.15 98.751 95.158 90.307 106.16 65 116 102 94 94 102 1 1 1 1 1 1 8222.9 9914 2844 9818 15505 20250 20250 1 IVTSTYKDGK Unmodified 1110.5921 0.59208927 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 1 8 0 1 41.31 41.31 3 0.036165 10150 TMT1-7 54.784 31.316 161.1 198.08 167.2 187.95 111.71 241.99 152 199 174 183 123 230 1 1 1 1 1 1 11208 9915 2844 9819 15506 20251 20251 1 IVTTYIR Unmodified 864.5069 0.50690308 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 7 0 1 48.708 48.708 2 0.024627 13051 TMT1-6 94.006 32.512 152.85 247.26 249.61 191.37 249.97 262.57 145 246 253 193 256 253 1 1 1 1 1 1 20063 9916 1226 9820 15507 20252 20252 1 IVTVNSILGIISVPLSIGYCASK Unmodified 2403.3447 0.3447187 2987 Q9Y394-2;Q9Y394 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 0 0 0 0 0 9 0 1 102.58 102.58 4 9.6589E-05 31988 TMT1-8 54.559 43.945 7.3084 45.705 36.991 5.9174 28.736 38.622 7 44 37 7 29 37 1 2 2 1 2 2 3134.6 9917 2987 9821 15508 20253;20254 20253 2 IVTYPGELLLQGVHDDVDIILLQD Unmodified 2677.4214 0.4214487 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 0 5.25 0.433 3 1 102.05 102.05 3;4 3.8683E-10 33304 TMT1-4 72.568 64.28 8.4495 19.362 17.027 3.6463 7.8421 14.7 8 19 17 4 8 14 2 3 3 2 2 3 4821.6 9918 2818 9822 15509;15510;15511;15512 20255;20256;20257;20258 20257 4 IVVAMAK Unmodified 730.44113 0.4411317 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 0 9 0 1 52.437 52.437 2 0.0091242 12748 TMT1-8 126.05 54.051 265.64 345.66 146.03 234.05 343.04 388.9 250 344 165 228 351 374 1 1 1 1 1 1 17539 9919 952 9823 15513 20259 20259 1 IVVFQYSDGK Unmodified 1154.5972 0.59717465 1888 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 0 8 0 1 61.499 61.499 2 0.00030893 18134 TMT1-7 123.86 87.1 139.25 128.11 112.61 101.38 180.6 118.5 131 131 116 102 181 116 1 1 1 1 1 1 17170 9920 1888 9824 15514 20260 20260 1 IVVLLQR Unmodified 839.55927 0.559273 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 9 0 1 58.714 58.714 2 0.0079057 15250 TMT1-8 138.61 85.089 611.51 1247.3 763.69 805.72 824.79 1282.3 580 1223 811 793 866 1225 2 2 2 2 2 2 144160 9921 1603 9825 15515 20261;20262 20262 2 IVVNLTGR Unmodified 870.5287 0.52870115 1418 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 0 9 0 1 51.782 51.782 2 0.0069286 12457 TMT1-8 121.67 67.917 254.44 356.95 215.87 303.91 417 273.79 240 355 233 297 421 268 2 2 2 2 2 2 65036 9922 1418 9826 15516 20263;20264 20263 2 IVVPPLPGK Unmodified 918.59024 0.59023878 2921 Q9UMY4-1;Q9UMY4;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 0 9 0 1 62.494 62.494 2 0.0098984 16662 TMT1-8 92.925 56.729 107.58 213.98 132.14 85.095 112.74 136.43 102 210 138 87 116 131 1 1 1 1 1 1 21638 9923 2921 9827 15517 20265 20265 1 IVVQGEPGDEFFIILEGSAAVLQR Unmodified 2586.3694 0.36935355 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 6.67 0.471 2 4 98.44 98.44 3;4 3.3835E-13 32720 TMT1-5 97.352 81.41 61.869 104.62 21.785 59.924 80.367 63.993 58 102 25 57 81 62 5 7 4 6 7 6 10937 9924 635 9828 15518;15519;15520;15521;15522;15523 20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277 20270 12 IVVVTAGVR Unmodified 912.57565 0.57565135 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 9 0 1 49.362 49.362 2 4.9989E-07 11555 TMT1-8 170.87 104.73 2889.3 3513.7 3023.5 2654.9 3202.4 3650.3 2726 3533 3112 2649 3298 3510 2 2 2 2 2 2 623880 9925 527 9829 15524 20278;20279 20278 2 IVYGHLDDPASQEIER Unmodified 1840.8955 0.89554151 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 50.196 50.196 3 6.4357E-16 15401 TMT1-2 133.47 116.25 283.67 416.34 300.91 230.48 332.37 399.86 268 414 312 233 341 384 3 3 3 3 3 3 104250 9926 2492 9830 15525;15526 20280;20281;20282 20281 3 IVYLYTK Unmodified 898.51641 0.51640513 1172 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 0 9 0 1 60.043 60.043 2 0.021246 15778 TMT1-8 94.262 36.798 191.96 168.25 235.68 266.22 266.38 263.16 181 174 239 261 275 254 2 2 2 2 2 2 27241 9927 1172 9831 15527 20283;20284 20284 2 IVYPTEK Unmodified 848.46437 0.46436956 1801 Q14847;Q14847-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 6 0 1 47.034 47.034 2 0.032904 12932 TMT1-5 89.369 49.827 279.8 341.33 475.12 356.06 251.31 551.41 265 346 474 356 274 524 1 1 1 1 1 1 157670 9928 1801 9832 15528 20285 20285 1 IWAAAPNR Unmodified 897.48209 0.48208531 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 45.317 45.317 2 0.021182 9954 TMT1-8 77.496 59.171 85.117 78.461 54.981 59.219 47.744 83.918 80 80 58 58 51 80 1 1 1 1 1 1 5290.1 9929 2440 9833 15529 20286 20286 1 IWAHEALR Unmodified 994.53485 0.53484916 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 41.695 41.695 3 0.0010787 10219 TMT1-6 117.04 86.782 68.916 70.633 79.42 57.347 69.817 83.288 65 72 80 58 72 80 1 1 1 1 1 1 9520.4 9930 1763 9834 15530 20287 20287 1 IWCFGPDGTGPNILTDITK Unmodified 2104.0299 0.029926505 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 8 0 2 85.398 85.398 3;4 1.0109E-06 27367 TMT1-7 81.656 77.761 53.902 80.317 69.899 65.415 77.823 83.059 51 80 72 65 80 80 2 2 2 2 2 2 31601 9931 685 9835 15531;15532 20288;20289 20288 2 IWDLADPEGK Unmodified 1142.5608 0.56078914 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 5 0 1 68.536 68.536 2 0.0093008 21259 TMT1-4 85.29 35.164 77.493 93.771 60.966 75.149 53.534 107.2 73 94 65 73 58 102 1 1 1 1 1 1 9841.6 9932 2835 9836 15533 20290 20290 1 IWDLEGK Unmodified 859.44397 0.44396847 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 6 0 1 62.262 62.262 3 0.016365 18971 TMT1-5 72.138 7.3021 146.33 180.37 140.18 115.66 147.71 173.81 138 181 145 116 152 167 1 1 1 1 1 1 6856.2 9933 1478 9837 15534 20291 20291 1 IWDSVSLSTLHVLGLGVFDR Unmodified 2213.1845 0.18445331 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 9 0 1 89.389 89.389 3 1.2674E-23 27202 TMT1-8 110.56 91.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9934 374 9838 15535 20292 20292 1 IWDTTQK Unmodified 890.44978 0.44978213 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 7 0 2 50.22 50.22 2;3 0.0034897 13535 TMT1-6 99.171 31.413 639.83 1060.9 849.65 751.25 775.44 873.31 606 1051 878 747 803 840 2 2 2 2 2 2 367620 9935 250 9839 15536;15537 20293;20294 20293 2 IWDTTQKEHLLK Unmodified 1510.8144 0.81437807 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 1 8 0 2 52.791 52.791 3;4 2.1263E-07 14704 TMT1-7 120.14 62.332 428.23 827.25 723.76 466.86 371.75 1038.3 407 816 736 473 410 984 2 2 2 2 2 2 181780 9936 250 9840 15538;15539 20295;20296 20296 2 IWDVSVNSVVSTFPMGSTVLDQQLGCLWQK Unmodified 3393.6737 0.67373377 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 9 0 2 101.11 101.11 4 2.9257E-10 31143 TMT1-8 64.779 44.804 69.921 94.008 77.37 105.85 54.275 130.64 66 94 80 102 59 124 2 3 2 3 2 3 36897 9937 250 9841 15540;15541 20297;20298;20299 20298 3 IWDVVEK Unmodified 887.47527 0.4752686 409;33 P01024;CON__Q2UVX4 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 no no 0 0 0 0 0 6 0 1 63.778 63.778 2 0.01822 19553 TMT1-5 98.997 36.018 84.352 122.74 146.02 69.222 99.106 128.29 80 123 145 73 102 123 1 1 1 1 1 1 17807 + 9938 409;33 9842 15542 20300 20300 1 IWEGSSK Unmodified 805.39702 0.39701828 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 7 0 1 46.389 46.389 2 0.0011192 12094 TMT1-6 96.19 56.648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9939 1596 9843 15543 20301 20301 1 IWHHTFYNELR Unmodified 1514.7419 0.74188183 1357;1479;1488;2044;9;615 P60709;P63261;P68032;P68133;A5A3E0;P0CG39;Q6S8J3;Q9BYX7 ACTB;ACTG1;ACTC1;ACTA1;POTEF;POTEJ;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 0 0 0 0 0 6 3.21 2 1 3 1 45.462 45.462 2;3;4 6.8E-32 11454 TMT1-7 212.21 195.37 9721.7 14168 11923 9454.3 11331 14721 9193 14119 12240 9495 11731 14113 21 21 21 21 21 21 2040500 9940 1357;1479;1488;9;615;2044 9844 15544;15545;15546;15547;15548;15549;15550 20302;20303;20304;20305;20306;20307;20308;20309;20310;20311;20312;20313;20314;20315;20316;20317;20318;20319;20320;20321;20322 20315 21 IWHPNISSVTGAICLDILK Unmodified 2136.1401 0.14014566 1376 P61086;P61086-2;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 9 0 1 77.266 77.266 4 0.0011207 22531 TMT1-8 50.397 22.547 46.451 104.74 39.092 44.841 48.954 67.893 44 102 44 44 51 65 1 1 1 1 1 1 6637.5 9941 1376 9845 15551 20323 20323 1 IWHPNITETGEICLSLLR Unmodified 2151.1147 0.11465919 2348 Q969M7-6;Q969M7;Q969M7-2;Q969M7-3;Q969M7-7 UBE2F NEDD8-conjugating enzyme UBE2F yes no 0 0 0 0 0 8 0 1 70.89 70.89 3 0.00071612 21849 TMT1-7 62.203 56.774 30.35 65.893 72.991 42.386 72.102 67.233 29 65 73 44 73 65 1 1 1 1 1 1 6558.3 9942 2348 9846 15552 20324 20324 1 IWNVHSVLNVLHSLVDK Unmodified 1972.0894 0.089430715 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 9 0 1 82.735 82.735 4 8.2257E-15 24598 TMT1-8 120.24 94.118 77.168 132.8 82.586 71.627 114.17 112.94 73 131 87 72 116 109 2 2 2 2 2 2 10747 9943 2953 9847 15553 20325;20326 20325 2 IWPGYSELPAVK Unmodified 1358.7234 0.72343779 826 P21127-12;P21127-4;P21127-5;P21127-10;P21127-6;P21127-9;P21127-8;P21127-3;P21127-2;P21127 CDK11B Cyclin-dependent kinase 11B yes no 0 0 0 0 0 8 0 1 69.088 69.088 3 0.00015647 21132 TMT1-7 94.692 61.604 37.879 74.063 63.093 58.429 64.051 36.548 36 73 65 58 65 36 1 1 1 1 1 1 5047.3 9944 826 9848 15554 20327 20327 1 IWPYVYAFLQTK Unmodified 1527.8126 0.81258715 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 9 0 1 91.795 91.795 3 9.4016E-08 28001 TMT1-8 121.36 95.249 91.929 122.41 135.18 117.74 111 113.03 87 123 137 117 115 109 3 3 3 3 3 3 9408.8 9945 2881 9849 15555 20328;20329;20330 20328 3 IWQYVYSK Unmodified 1085.5546 0.55458155 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 0 9 0 2 66.611 66.611 2;3 0.024107 18411 TMT1-8 74.92 15.939 206.79 340.63 302.48 160.14 232.2 334.49 196 338 306 167 240 320 2 2 2 2 2 2 100450 9946 1381;1087 9850 15556;15557 20331;20332 20332 2 IWSEPFYQETYLPYMIR Unmodified 2235.0711 0.071063038 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 1 85.518 85.518 3 0.00073545 27456 TMT1-7 65.225 57.139 30.746 20.583 44.954 28.373 34.263 60.85 29 22 44 29 36 58 1 1 1 1 1 1 3374.7 9947 1507 9851 15558 20333 20333 1 IWSVPNASCVQVVR Unmodified 1613.8348 0.83479593 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 0 9 0 1 62.335 62.335 2 0.00024986 16671 TMT1-8 87.777 38.277 23.244 28.678 36.499 13.814 21.593 22.836 22 29 36 15 22 22 1 1 1 1 1 1 7062.7 9948 2918 9852 15559 20334 20334 1 IWYHTFYNELR Unmodified 1540.7463 0.7462985 1952 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 0 0 0 9 0 3 47.747 47.747 4 0.0024296 10309 TMT1-8 67.548 32.595 1232.9 1868.3 1653.5 1249.8 1763.6 1738.4 1167 1860 1689 1264 1798 1678 6 6 6 6 6 6 183750 9949 1952 9853 15560;15561;15562 20335;20336;20337;20338;20339;20340 20335 6 IYAMHWGTDSR Unmodified 1335.603 0.60300508 1454;1453 P62879;P62873;P62873-2 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 0 8 0 1 48.937 48.937 3 0.04019 13227 TMT1-7 45.939 25.757 91.98 138.74 112.89 85.982 126.57 189.33 87 138 116 87 131 181 1 1 1 1 1 1 12995 9950 1454;1453 9854 15563 20341 20341 1 IYANFFPYGDASK Unmodified 1491.7034 0.70343063 1051 P37235;P84074 HPCAL1;HPCA Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin yes no 0 0 0 0 0 8 0 1 70.211 70.211 3 0.00040877 21630 TMT1-7 80.522 50.214 146.19 203.73 143.9 170.62 177.14 156.98 138 203 152 167 182 152 2 2 2 2 2 2 33093 9951 1051 9855 15564 20342;20343 20343 2 IYDDDFFQNLDGVANALDNVDAR Unmodified 2599.1827 0.18267499 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4.67 0.471 1 2 90.606 90.606 3;4 3.0346E-29 29803 TMT1-4 136.64 132.2 97.769 147.3 87.027 71.539 104.73 113.84 92 146 92 72 107 109 5 6 6 6 6 5 42049 9952 845 9856 15565;15566;15567 20344;20345;20346;20347;20348;20349 20348 6 IYDEILQSK Unmodified 1107.5812 0.58119023 2877 Q9UIB8-3;Q9UIB8-2;Q9UIB8;Q9UIB8-7 CD84 SLAM family member 5 yes no 0 0 0 0 0 5 0 1 62.813 62.813 3 0.0010375 19036 TMT1-4 97.431 22.511 30.764 28.189 35.463 36.878 18.957 68.749 29 29 36 36 22 65 1 1 1 1 1 1 4388.2 9953 2877 9857 15568 20350 20350 1 IYDLNIPAFVK Unmodified 1291.7176 0.71762413 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 0 0 0 0 8 0 1 76.634 76.634 3 0.001468 24038 TMT1-7 81.865 67.304 131.75 120.04 116.82 188.56 122.88 159.59 124 123 123 181 131 153 2 2 2 2 2 2 20716 9954 187 9858 15569 20351;20352 20351 2 IYDLNKPEAEPK Unmodified 1415.7296 0.72964538 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 1 6 0 2 48.948 48.948 3;4 1.0266E-05 13713 TMT1-5 113.07 80.728 544.85 688.6 718.72 534.93 720.4 937.78 515 693 727 541 743 899 2 2 2 2 2 2 43304 9955 3000 9859 15570;15571 20353;20354 20353 2 IYDREQTR Unmodified 1079.536 0.53597137 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 3 0 1 26.098 26.098 3 0.025009 5782 TMT1-2 68.383 39.656 53.901 87.87 63.604 26.536 72.831 67.212 51 87 65 29 73 65 1 1 1 1 1 1 5511.9 9956 1139 9860 15572 20355 20355 1 IYDSGTYK Unmodified 945.44436 0.4443624 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 6 0 1 44.812 44.812 2 0.0055633 12105 TMT1-5 117.04 52.233 90.361 300.45 247.82 264.32 270.84 410.14 87 292 257 260 284 392 1 1 1 1 1 1 26517 9957 740 9861 15573 20356 20356 1 IYEFPETDDEEENK Unmodified 1756.7316 0.73155546 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 2 0 1 58.934 58.934 3 1.5039E-10 18415 TMT1-1 124.24 107.36 46.102 80.027 118.72 39.53 79.013 83.025 44 80 116 44 80 80 1 1 1 1 1 1 15044 9958 1883 9862 15574 20357 20357 1 IYEFPETDDEEENKLVK Unmodified 2096.979 0.97899637 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 4.67 0.471 1 2 61.111 61.111 3 1.3028E-18 18647 TMT1-3 133.66 98.706 171.88 384.56 361.32 338.47 94.704 414.1 164 378 370 331 119 391 1 1 1 1 1 1 51486 9959 1883 9863 15575;15576;15577 20358;20359;20360 20358 3 IYEGAYHVLHK Unmodified 1328.6877 0.68772099 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 7 0 2 46.142 46.142 3;4 3.0248E-05 12054 TMT1-6 108.43 72.695 368.08 416.18 542.85 327.84 375.07 548.95 348 423 540 336 391 525 2 2 2 2 2 2 129360 9960 2482 9864 15578;15579 20361;20362 20362 2 IYEIYSDFALK Unmodified 1360.6915 0.69146896 2962 Q9Y296-2;Q9Y296 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 0 0 0 0 0 7 0 1 77.595 77.595 3 0.00055087 24360 TMT1-6 65.5 41.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9961 2962 9865 15580 20363 20363 1 IYELAAGGTAVGTGLNTR Unmodified 1762.9214 0.92136233 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 6.67 0.471 1 2 61.647 61.647 2;3 1.1571E-13 18134 TMT1-6 123.68 88.789 124.3 121.79 105.82 94.031 127.82 142.39 117 124 109 94 131 137 3 3 3 3 3 3 52875 9962 553 9866 15581;15582;15583 20364;20365;20366 20365 3 IYEPLDVK Unmodified 975.5277 0.5276981 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 5 0 1 57.491 57.491 2 0.0058126 16918 TMT1-4 113.71 69.014 138.82 142.05 171.82 162.18 130.91 174.29 131 145 174 160 138 167 1 1 1 1 1 1 15844 9963 1142 9867 15584 20367 20367 1 IYESHVGISSHEGK Unmodified 1541.7474 0.74742071 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 5 0 1 36.135 36.135 4 6.6189E-06 8520 TMT1-4 99.941 71.614 91.538 176.37 155.17 154.97 102.2 136.73 87 174 160 152 109 131 1 1 1 1 1 1 8994 9964 1583 9868 15585 20368 20368 1 IYESIEEAK Unmodified 1080.5339 0.53390569 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 3.5 0.5 1 1 55.26 55.26 2 3.3449E-14 16253 TMT1-3 190.73 110.29 161.37 290.75 223.77 250.41 272.59 286.44 153 287 234 246 281 276 2 2 2 2 2 2 34686 9965 251 9869 15586;15587 20369;20370 20370 2 IYFGSNIPNMFVDSSCALK Unmodified 2162.0176 0.017647259 280 O75477 ERLIN1 Erlin-1 yes yes 0 0 0 0 0 9 0 1 81.416 81.416 3 0.0013307 24143 TMT1-8 51.487 33.349 30.725 35.635 35.716 45.456 26.954 37.607 29 36 37 44 29 36 1 1 1 1 1 1 3931.2 9966 280 9870 15588 20371 20371 1 IYFLLVR Unmodified 922.56402 0.56402403 1937;276 Q4G0F5;O75436-2;O75436 VPS26B;VPS26A Vacuolar protein sorting-associated protein 26B;Vacuolar protein sorting-associated protein 26A no no 0 0 0 0 0 9 0 1 73.599 73.599 2 0.015694 21087 TMT1-8 97.306 63.51 38.022 43.16 65.305 50.359 79.321 59.565 36 44 65 51 80 58 1 1 1 1 1 1 7483.4 9967 1937;276 9871 15589 20372 20372 1 IYFMAGSSR Unmodified 1030.4906 0.49060109 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 9 0 1 53.683 53.683 2 0.0001157 13217 TMT1-8 150.88 90.292 245.53 372.83 257.07 208.74 290.65 333.89 232 370 268 210 298 321 2 2 2 2 2 2 53908 9968 708 9872 15590 20373;20374 20373 2 IYFTDSSSK Unmodified 1046.492 0.49204087 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 7 0 1 51.806 51.806 2 0.0014108 14257 TMT1-6 119.86 71.108 91.919 162.32 103.13 103.41 102.74 190.01 87 160 109 102 109 181 1 1 1 1 1 1 10731 9969 2697 9873 15591 20375 20375 1 IYGADDIELLPEAQHK Unmodified 1810.9101 0.91012895 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 62.045 62.045 4 0.00055747 19045 TMT1-3 67.326 62.324 91.615 176.58 142.08 84.226 127.42 166.92 87 174 145 87 131 160 1 1 1 1 1 1 12763 9970 657 9874 15592 20376 20376 1 IYGESADAVK Unmodified 1051.5186 0.51858998 1235 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 0 4 0 1 45.731 45.731 3 0.010988 12569 TMT1-3 63.283 45.552 68.633 141.08 67.28 64.995 108.46 74.723 65 138 73 65 109 73 1 1 1 1 1 1 4525.6 9971 1235 9875 15593 20377 20377 1 IYGFYDECK Unmodified 1193.5063 0.50631073 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 6 0 2 58.065 58.065 2;3 8.3178E-18 17355 TMT1-5 160.75 137.43 294.56 271.22 217.89 223.76 255.55 269.87 277 277 227 221 263 260 1 1 1 1 1 1 33670 9972 1044;1413;1414 9876 15594;15595 20378;20379 20379 2 IYGISFPDPK Unmodified 1135.5914 0.59136099 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 66.704 66.704 3 0.003197 20220 TMT1-7 77.677 67.99 115.91 99.185 91.322 86.436 170.77 211.53 109 102 94 87 174 203 1 1 1 1 1 1 34922 9973 902 9877 15596 20380 20380 1 IYGLGSLALYEK Unmodified 1325.7231 0.72310344 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 8 0 1 72.262 72.262 3 9.1887E-05 22434 TMT1-7 99.215 67.987 199.67 322.81 251.33 240.08 328.04 299.78 189 320 261 239 334 290 2 2 2 2 2 2 73224 9974 1038 9878 15597 20381;20382 20382 2 IYGNFFPYGDASK Unmodified 1477.6878 0.68778057 1394 P61601 NCALD Neurocalcin-delta yes yes 0 0 0 0 0 8 0 1 68.187 68.187 3 0.00012421 20770 TMT1-7 69.602 49.495 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9975 1394 9879 15598 20383 20383 1 IYHPNIDEK Unmodified 1127.5611 0.56112349 1489 P68036;P68036-3;P68036-2;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 0 5.33 0.471 2 1 40.87 40.87 2;3 0.00018283 10408 TMT1-4 146.79 93.292 291.41 480.31 389.04 302.35 358.13 467.35 276 476 400 304 371 448 3 3 3 3 3 3 169280 9976 1489 9880 15599;15600;15601 20384;20385;20386 20384 3 IYHPNVDK Unmodified 984.50288 0.50288033 1377 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 0 6 0 1 37.364 37.364 3 0.0051624 9177 TMT1-5 84.213 39.863 555.15 1022.7 867.7 722.99 825.86 1331.3 527 1010 891 723 865 1271 1 1 1 1 1 1 176130 9977 1377 9881 15602 20387 20387 1 IYIDDNNKK Unmodified 1121.5717 0.57168818 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 6 0 1 42.914 42.914 3 0.006215 11319 TMT1-5 78.098 48.554 760.27 1003.8 854.49 633.08 766.77 1131.5 718 1005 875 639 798 1082 1 1 1 1 1 1 55952 9978 1152;1153 9882 15603 20388 20388 1 IYIDSNNNPER Unmodified 1333.6262 0.62624295 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 2.67 1.25 1 1 1 43.361 43.361 2 1.4758E-23 11523 TMT1-3 200.68 145.62 247.62 364.97 273.13 198.64 254.1 284.83 234 363 282 201 261 274 4 4 4 4 4 4 77758 9979 1540 9883 15604;15605;15606 20389;20390;20391;20392 20391 4 IYIPLPEPHAR Unmodified 1304.7241 0.7241065 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 0 7 0 1 55.261 55.261 3 0.00057733 15641 TMT1-6 91.095 63.014 69.88 86.446 84.319 95.989 91.829 91.188 66 87 87 94 95 88 2 2 2 2 2 2 15557 9980 267 9884 15607 20393;20394 20394 2 IYKVPSTEAEALASSLMGLFEK Unmodified 2383.2345 0.23449955 1217 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 0 1 9 0 2 92.758 92.758 3;4 1.1065E-06 28409 TMT1-8 68.552 44.276 54.07 87.865 63.221 59.418 69.172 99.296 51 87 66 59 72 95 2 3 3 3 3 3 19837 9981 1217 9885 15608;15609 20395;20396;20397 20396 3 IYKVPSTETEALASNLMGMFEK Unmodified 2458.2124 0.2123839 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 9 0 1 83.525 83.525 4 0.0010297 24919 TMT1-8 49.089 32.782 30.813 28.325 27.122 53.903 11.908 38.036 29 29 29 51 15 36 1 1 1 1 1 1 5184.6 9982 972 9886 15610 20398 20398 1 IYLDMLNVYK Unmodified 1270.6631 0.66314572 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 1 77.085 77.085 2 0.0045171 22412 TMT1-8 93.111 50.084 46.704 50.4 42.732 36.292 27.083 46.131 44 51 44 36 29 44 1 1 1 1 1 1 6412.1 9983 121 9887 15611 20399 20399 1 IYLEVDNVPR Unmodified 1216.6452 0.64518747 869 P23743;P23743-3;P23743-2 DGKA Diacylglycerol kinase alpha yes no 0 0 0 0 0 5 0 1 58.085 58.085 2 0.0029979 17175 TMT1-4 97.565 69.053 84.93 77.942 86.836 49.248 70.174 114.19 80 80 87 51 73 109 1 1 1 1 1 1 9652.7 9984 869 9888 15612 20400 20400 1 IYLPYLHEWK Unmodified 1360.718 0.71795849 2494 Q99816 TSG101 Tumor susceptibility gene 101 protein yes yes 0 0 0 0 0 9 0 1 65.556 65.556 3 0.0011223 17930 TMT1-8 85.377 49.732 161.39 203.18 115.2 109.62 140.91 166.54 152 203 123 109 145 160 1 1 1 1 1 1 12527 9985 2494 9889 15613 20401 20401 1 IYLTADNLVLNLQDESFTR Unmodified 2224.1376 0.1375627 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 6.5 0.5 1 1 83.599 83.599 3 2.5096E-15 27290 TMT1-5 100.82 96.408 23.331 28.92 21.686 5.9504 21.698 30.295 22 29 22 7 22 29 1 1 1 1 1 1 6573.6 9986 2479 9890 15614;15615 20402;20403 20402 2 IYLYLTK Unmodified 912.53206 0.5320552 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 66.604 66.604 2 0.014103 18402 TMT1-8 105.12 9.496 53.754 79.904 95.184 32.749 49.217 76.414 51 80 94 36 51 73 1 1 1 1 1 1 27731 9987 1084 9891 15616 20404 20404 1 IYLYTHLK Unmodified 1049.591 0.59096706 218 O60268-2;O60268-3;O60268 KIAA0513 Uncharacterized protein KIAA0513 yes no 0 0 0 0 0 9 0 1 52.951 52.951 3 0.0024896 12998 TMT1-8 81.548 57.755 230.41 327.19 311.01 324.19 316.04 323.57 218 327 320 319 327 312 2 2 2 2 2 2 19312 9988 218 9892 15617 20405;20406 20405 2 IYLYTLNDNAR Unmodified 1354.6881 0.68811492 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 60.124 60.124 2 6.1607E-09 17508 TMT1-6 164.97 140.59 68.677 102.35 92.703 56.531 71.158 75.787 65 102 94 58 73 73 1 1 1 1 1 1 15249 9989 442 9893 15618 20407 20407 1 IYPFWTPDIPLSSYVK Unmodified 1924.9975 0.99748739 1967 Q5R3I4 TTC38 Tetratricopeptide repeat protein 38 yes yes 0 0 0 0 0 9 0 1 87.691 87.691 3 4.8107E-06 26512 TMT1-8 80.632 61.799 69.494 25.832 20.227 37.634 27.021 46.133 65 29 22 36 29 44 1 1 1 1 1 1 4556.2 9990 1967 9894 15619 20408 20408 1 IYPLPHMYVIK Unmodified 1372.7577 0.75771481 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 0 9 0 1 62.149 62.149 3 6.9922E-07 16585 TMT1-8 118.18 69.436 99.641 146.2 81.256 80.891 90.707 113.61 94 145 87 80 94 109 1 1 1 1 1 1 12044 9991 834 9895 15620 20409 20409 1 IYPTFLHLHGK Unmodified 1324.7292 0.72919187 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 9 0 1 51.996 51.996 4 0.00031949 12577 TMT1-8 83.869 61.129 92.201 131.8 81.507 95.487 127.46 150.93 87 131 87 94 131 145 1 1 1 1 1 1 9235.3 9992 1627 9896 15621 20410 20410 1 IYPTIWWLFR Unmodified 1393.7547 0.75467834 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 9 0 1 91.504 91.504 2 1.1398E-05 27990 TMT1-8 140.14 75.655 61.428 56.1 87.908 57.26 47.577 91.384 58 58 87 58 51 87 1 1 1 1 1 1 27315 9993 655 9897 15622 20411 20411 1 IYPYEMLVVTNK Unmodified 1468.7636 0.76358805 1623 Q08495-4;Q08495 DMTN Dematin yes no 0 0 0 0 0 8 0 1 72.866 72.866 3 0.0004391 22562 TMT1-7 86.313 53.579 107 130.16 120.16 102.64 89.413 122.17 101 131 123 102 94 117 2 2 2 2 2 2 23927 9994 1623 9898 15623 20412;20413 20412 2 IYQFTAASPK Unmodified 1124.5866 0.58660996 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 8.5 0.5 1 1 54.676 54.676 2;3 4.2424E-06 13586 TMT1-8 145.99 90.618 304.91 262.96 288.8 220.57 200.61 320.47 287 271 292 221 212 306 2 2 2 2 2 2 39616 9995 289 9899 15624;15625 20414;20415 20415 2 IYQGEDLPHPK Unmodified 1295.651 0.65100113 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 5 0 1 45.085 45.085 3 0.0011006 12060 TMT1-4 85.672 51.14 317.2 435.48 420.66 330.18 405.38 516.1 300 436 428 332 419 495 2 2 2 2 2 2 24214 9996 2007 9900 15626 20416;20417 20417 2 IYQHVINK Unmodified 1013.5658 0.56581494 2726 Q9NRF8 CTPS2 CTP synthase 2 yes yes 0 0 0 0 0 8 0 1 41.268 41.268 3 0.0037872 10137 TMT1-7 57.177 37.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9997 2726 9901 15627 20418 20418 1 IYQIYEGTSQIQR Unmodified 1597.81 0.81002097 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 56.221 56.221 2 2.4631E-08 16629 TMT1-5 127.78 90.623 54.203 73.598 25.063 36.499 72.08 75.761 51 73 29 36 73 73 1 1 1 1 1 1 9272.1 9998 653 9902 15628 20419 20419 1 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR Unmodified 3149.549 0.54900226 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 1 6 0 1 53.851 53.851 4 0.024738 15719 TMT1-5 31.111 17.705 46.827 34.556 35.348 29.064 27.965 30.116 44 36 36 29 29 29 1 1 1 1 1 1 14984 9999 1378 9903 15629 20420 20420 1 IYQYVINK Unmodified 1039.5702 0.57023162 763 P17812 CTPS1 CTP synthase 1 yes yes 0 0 0 0 0 8 0 1 59.771 59.771 3 0.03159 17464 TMT1-7 54.157 28.038 69.218 56.362 40.867 67.586 54.432 91.189 65 58 44 65 58 87 1 1 1 1 1 1 4609 10000 763 9904 15630 20421 20421 1 IYSHDGTDSPPDADEVVIVLNNFK Unmodified 2644.2657 0.26567634 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 5 0 1 76.92 76.92 4 0.0012642 24610 TMT1-4 46.578 32.847 23.12 44.523 43.889 20.897 28.34 30.105 22 44 44 22 29 29 1 1 1 1 1 1 4869 10001 2789 9905 15631 20422 20422 1 IYSLFNLYMSK Unmodified 1377.7003 0.70025951 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 9 0 1 83.458 83.458 3 0.00079335 24884 TMT1-8 79.659 40.393 30.68 35.511 43.318 45.013 26.425 53.612 29 36 44 44 29 51 1 1 1 1 1 1 11153 10002 1786 9906 15632 20423 20423 1 IYTYIGEVLVSVNPYQELPLYGPEAIAR Unmodified 3166.6591 0.65905321 20 B0I1T2;B0I1T2-4;B0I1T2-3;B0I1T2-2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 8 0 1 100.21 100.21 4 1.2658E-05 32729 TMT1-7 56.986 50.622 4.2162 11.368 3.103 11.71 6.7841 0 4 11 4 11 7 0 1 1 1 1 1 0 1996.6 10003 20 9907 15633 20424 20424 1 IYVAELIQQLQQQALSEPAVVQK Unmodified 2595.4272 0.42720278 1668 Q13084 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 0 0 0 0 0 9 0 1 94.478 94.478 4 5.9823E-11 29101 TMT1-8 81.665 62.112 30.802 28.296 28.908 13.842 44.113 37.117 29 29 29 15 44 36 1 1 1 1 1 1 3517.7 10004 1668 9908 15634 20425 20425 1 IYVDDGLISLQVK Unmodified 1461.8079 0.80789571 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 6.5 0.5 1 1 74.337 74.337 2;3 2.0946E-21 23126 TMT1-6 188.28 134.92 1162.6 1937 1328 1112.5 1437.7 1665.6 1100 1915 1386 1115 1478 1601 5 5 5 5 5 5 335470 10005 706;707 9909 15635;15636 20426;20427;20428;20429;20430 20429 5 IYVENDFSWDK Unmodified 1414.6405 0.64049603 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5.33 0.471 2 1 67.705 67.705 2;3 2.5007E-05 21003 TMT1-5 111.86 88.938 432.55 483.27 470.22 548.9 532.59 448.51 408 489 486 537 548 435 4 4 4 4 4 4 113170 10006 565 9910 15637;15638;15639 20431;20432;20433;20434 20433 4 IYVENDFSWDKR Unmodified 1570.7416 0.74160705 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 6.5 0.5 1 1 58.924 58.924 2;3 4.6428E-13 17617 TMT1-5 168.22 157.67 914.55 1171 1112.9 808.43 910.79 1302.2 864 1176 1131 816 949 1246 3 3 3 3 3 3 144720 10007 565 9911 15640;15641 20435;20436;20437 20435 3 IYVGNASVAQDIPK Unmodified 1473.7827 0.78274359 1241 P51452 DUSP3 Dual specificity protein phosphatase 3 yes yes 0 0 0 0 0 6 0 2 58.907 58.907 2;3 1.8303E-21 17669 TMT1-5 167.71 131.75 169.6 232.86 152.51 129.79 170.89 180.61 160 232 160 130 175 174 2 2 2 2 2 2 59517 10008 1241 9912 15642;15643 20438;20439 20439 2 IYVGNLPPDIR Unmodified 1255.6925 0.69247202 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 7 0 1 60.488 60.488 2 0.0065666 17714 TMT1-6 83.883 67.55 53.999 88.142 46.962 59.693 47.978 76.449 51 87 51 58 51 73 1 1 1 1 1 1 7810.3 10009 1615 9913 15644 20440 20440 1 IYVGNLPTDVR Unmodified 1245.6717 0.67173657 1686 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 0 6 0 1 57.328 57.328 2 0.028158 17059 TMT1-5 66.664 36.921 69.005 71.959 63.403 50.773 63.34 67.483 65 73 65 51 65 65 1 1 1 1 1 1 12386 10010 1686 9914 15645 20441 20441 1 IYVIEGTSK Unmodified 1008.5492 0.54916182 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 7 0 1 53.714 53.714 2 0.0038006 14984 TMT1-6 100.84 52.679 46.439 57.22 81.378 34.001 26.418 68.536 44 58 80 36 29 65 1 1 1 1 1 1 7771.1 10011 817 9915 15646 20442 20442 1 IYVISLAEPR Unmodified 1159.6601 0.66010926 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7.5 0.5 1 1 64.813 64.813 2 2.4005E-09 19397 TMT1-7 143.73 91.051 46.759 50.553 33.355 52.27 78.977 67.036 44 51 36 51 80 65 1 1 1 1 1 1 4960.6 10012 714 9916 15647;15648 20443;20444 20444 2 KAAALEFLNR Unmodified 1131.64 0.64004252 986 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 9 0 1 51.971 51.971 3 0.022215 12611 TMT1-8 66.486 37.324 222.32 275.19 272.23 269.8 250.51 263.62 210 277 279 266 260 254 1 1 1 1 1 1 52288 10013 986 9917 15649 20445 20445 1 KAAAPAPEEEMDECEQALAAEPK Unmodified 2484.1149 0.1148547 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 3 0 1 53.629 53.629 4 1.484E-06 16707 TMT1-2 73.546 66.27 46.659 50.276 50.353 35.408 49.901 52.942 44 51 51 36 51 51 1 1 1 1 1 1 11845 10014 904 9918 15650 20446 20446 1 KAADDTWEPFASGK Unmodified 1521.71 0.70997257 446 P02766 TTR Transthyretin yes yes 0 0 0 0 1 6 0 1 52.747 52.747 3 1.2221E-05 15220 TMT1-5 100.41 60.901 242.46 331.38 266.63 244.7 324.2 252.98 229 331 276 244 329 246 1 1 1 1 1 1 33944 10015 446 9919 15651 20447 20447 1 KAAGGATPK Unmodified 799.4552 0.45520186 745 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 1 8 0 1 27.318 27.318 3 0.0014614 4902 TMT1-7 98.943 41.662 211.22 92.123 129.35 154.5 208.74 50.542 198 102 132 152 208 53 1 1 1 1 1 1 22513 10016 745 9920 15652 20448 20448 1 KAAGHPGDPESQQR Unmodified 1476.707 0.70695288 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 0.816 1 1 1 22.929 22.929 4 2.3688E-07 3821 TMT1-4 105.08 99.9 537.78 618.95 521.99 406.56 555.87 691.96 507 624 536 410 572 664 11 11 11 11 11 11 30072 10017 3010 9921 15653;15654;15655 20449;20450;20451;20452;20453;20454;20455;20456;20457;20458;20459 20454 11 KAAIISAEGDSK Unmodified 1188.635 0.63501672 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 1 6 0 1 41.468 41.468 3 0.00043103 10779 TMT1-5 90.229 64.11 107.68 199.13 128.81 179.93 136.84 191.17 102 196 138 174 145 183 1 1 1 1 1 1 13950 10018 1012 9922 15656 20460 20460 1 KAAITSYEK Unmodified 1009.5444 0.5444108 957 P30273 FCER1G High affinity immunoglobulin epsilon receptor subunit gamma yes yes 0 0 0 0 1 7 0 1 40.053 40.053 3 0.0035324 9582 TMT1-6 87.184 61.246 325.64 380.52 492.08 208.69 420.19 338.72 308 386 486 225 422 329 1 1 1 1 1 1 29025 10019 957 9923 15657 20461 20461 1 KAALEAQNALHNIK Unmodified 1519.8471 0.84707518 348 O95319-5;O95319-2;O95319;O95319-4;O95319-3 CELF2 CUGBP Elav-like family member 2 yes no 0 0 0 0 1 8 0 1 46.09 46.09 4 8.2777E-05 11961 TMT1-7 86.291 66.551 307.14 469.56 459.7 259.05 344.1 507.19 291 468 463 268 357 485 1 1 1 1 1 1 60512 10020 348 9924 15658 20462 20462 1 KAALEEVER Unmodified 1043.5611 0.56112349 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 38.184 38.184 3 0.011322 9583 TMT1-3 71.555 54.923 210.14 392.58 236.44 236.4 280.11 451.45 199 386 251 234 293 431 1 1 1 1 1 1 19058 10021 1833 9925 15659 20463 20463 1 KAAYDIEVNTR Unmodified 1278.6568 0.65681479 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 1 5 0 1 40.553 40.553 3 2.4457E-05 10266 TMT1-4 89.231 56.284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10022 318 9926 15660 20464 20464 1 KACADATLSQITNNIDPVGR Unmodified 2143.0692 0.069165558 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 1 7 0 1 59.163 59.163 3 1.6731E-10 17145 TMT1-6 103.01 86.322 69.157 48.639 57.546 43.623 55.277 98.627 65 51 58 44 58 94 1 1 1 1 1 1 25302 10023 1453 9927 15661 20465 20465 1 KACGDSTLTQITAGLDPVGR Unmodified 2059.0368 0.036802797 1454 P62879 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes yes 0 0 0 0 1 7 0 1 59.592 59.592 3 1.2022E-13 17327 TMT1-6 113.63 97.128 91.881 130.91 136.12 109.49 81.549 128.79 87 131 138 109 87 123 1 1 1 1 1 1 27407 10024 1454 9928 15662 20466 20466 1 KADEVLEILK Unmodified 1156.6703 0.67033959 293 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 1 6 0 1 61.677 61.677 3 0.0096099 18719 TMT1-5 70.412 14.96 108 145 119.33 101.18 169.83 219.01 102 145 123 102 174 210 1 1 1 1 1 1 12893 10025 293 9929 15663 20467 20467 1 KADGYNQPDSK Unmodified 1221.5626 0.56258006 226;170 O43390;O43390-3;O43390-2;O43390-4;O60506-2;O60506 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 5 0 1 31.866 31.866 3 6.9026E-06 6818 TMT1-4 118.76 84.79 184.49 261.7 149.63 153.85 179.22 149.46 174 260 160 152 183 145 1 1 1 1 1 1 12639 10026 170;226 9930 15664 20468 20468 1 KADPQEAINCLMR Unmodified 1544.7439 0.74393201 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 1 7 0 1 53.213 53.213 3 0.0024296 14798 TMT1-6 72.88 54.468 169.69 174.82 187.09 136.22 184.15 212.21 160 178 189 138 189 204 1 1 1 1 1 1 16373 10027 1304 9931 15665 20469 20469 1 KAEAAASALADADADLEER Unmodified 1915.9123 0.91231379 186 O43633 CHMP2A Charged multivesicular body protein 2a yes yes 0 0 0 0 1 3 0 1 56.748 56.748 3 1.6801E-06 17875 TMT1-2 83.602 61.381 69.657 133.31 82.22 80.016 76.088 114.02 66 131 87 79 80 109 2 2 2 2 2 2 14350 10028 186 9932 15666 20470;20471 20470 2 KAEADPQAIPK Unmodified 1166.6295 0.62953741 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 1 6 0 1 38.489 38.489 3 0.0021889 9606 TMT1-5 83.045 37.908 176.65 254.82 210.62 203.67 300.96 253.65 167 254 218 203 305 246 2 2 2 2 2 2 8962.9 10029 1247 9933 15667 20472;20473 20473 2 KAEAGAGSATEFQFR Unmodified 1568.7583 0.75831975 1137 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 1 6 0 1 43.271 43.271 3 1.2231E-07 11477 TMT1-5 110.48 88.01 274.61 396 217.71 256.18 334.11 406.21 259 393 235 252 344 390 1 1 1 1 1 1 37272 10030 1137 9934 15668 20474 20474 1 KAEAQIAAK Unmodified 928.53418 0.53418046 396 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 0 1 7 0 1 35.276 35.276 3 0.0037993 7734 TMT1-6 86.014 62.163 349.62 507.32 320.74 335.27 276.91 503.78 330 504 340 329 296 480 1 1 1 1 1 1 34056 10031 396 9935 15669 20475 20475 1 KAEEELGELEAK Unmodified 1344.6773 0.67727546 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 1 4 0 1 50.387 50.387 3 0.0037296 14454 TMT1-3 72.523 42.085 99.673 131.18 88.717 103.67 134.67 143.27 94 131 94 102 138 138 1 1 1 1 1 1 10891 10032 2944 9936 15670 20476 20476 1 KAEEIANEMIEAAK Unmodified 1545.7709 0.77085827 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 5 0 1 64.302 64.302 3 0.0095675 19565 TMT1-4 58.461 36.575 92.661 61.85 63.549 58.432 62.438 83.498 87 65 65 58 65 80 1 1 1 1 1 1 12048 10033 1184 9937 15671 20477 20477 1 KAEELER Unmodified 873.4556 0.45559579 3093 P29833;P0C6M1 yes no 0 0 0 0 1 3 0 1 30.275 30.275 3 0.040544 7445 TMT1-2 63.534 0 267.42 354.23 199.27 217.13 260.38 381.66 252 353 214 214 271 365 1 1 1 1 1 1 16740 10034 3093 9938 15672 20478 20478 1 KAEHQVGEDGFLLK Unmodified 1569.8151 0.81510635 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 6 0 1 45.407 45.407 4 2.0759E-07 12324 TMT1-5 106.55 61.293 372.67 429.67 480.86 437.77 421.71 506.04 352 435 488 434 439 486 1 1 1 1 1 1 27880 10035 1093;1253 9939 15673 20479 20479 1 KAEIGIAMGSGTAVAK Unmodified 1502.8127 0.81266351 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 1 8 0 2 50.349 50.349 3;4 2.5511E-11 13713 TMT1-7 119.68 81.491 661.66 1011.7 649 534.4 795.12 1077.4 625 1003 681 538 819 1032 3 3 3 3 3 3 101840 10036 2344;748 9940 15674;15675 20480;20481;20482 20480 3 KAETEQHIK Unmodified 1082.572 0.57202253 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 5 0 1 29.022 29.022 4 0.014427 5674 TMT1-4 60.563 36.22 100.38 130.1 150.29 131.56 141.78 112.15 95 131 152 131 145 109 2 2 2 2 2 2 9454.9 10037 2440 9941 15676 20483;20484 20483 2 KAEVEGK Unmodified 759.41267 0.41266834 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 5 0 1 31.568 31.568 3 0.030786 6677 TMT1-4 68.735 26.755 458.78 414.67 267.28 311.97 348.72 271.47 431 423 285 306 356 264 1 1 1 1 1 1 20418 10038 1545 9942 15677 20485 20485 1 KAFEEAEK Unmodified 950.47091 0.4709115 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 5 0 1 37.576 37.576 3 0.0064797 9042 TMT1-4 88.496 49.191 521.86 649.67 466.94 436.95 625.77 778.45 492 651 488 436 643 747 1 1 1 1 1 1 95002 10039 1311 9943 15678 20486 20486 1 KAFLDFYHSFLEK Unmodified 1643.8348 0.83477916 2325 Q92888;Q92888-3 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 1 9 0 1 69.319 69.319 4 0.0027283 19405 TMT1-8 58.21 35.677 224.88 422.07 258.81 227.05 299.86 315.51 213 415 273 227 307 304 1 1 1 1 1 1 13542 10040 2325 9944 15679 20487 20487 1 KAFSGYLGTDQSK Unmodified 1400.6936 0.69359423 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 1 8 0 1 47.327 47.327 3 0.013707 12597 TMT1-7 57.973 34.223 130.38 305.09 191.13 214.37 200.45 272.51 124 298 203 210 210 261 2 2 2 2 2 2 26941 10041 637 9945 15680 20488;20489 20489 2 KAGAEVVK Unmodified 800.4756 0.47560295 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 7 0 1 34.011 34.011 3 0.023325 7210 TMT1-6 67.704 22.392 191.64 256.93 215.04 172.86 239.3 202.11 181 257 221 174 243 196 1 1 1 1 1 1 9713.9 10042 1297 9946 15681 20490 20490 1 KAGCAVTSLLASELTK Unmodified 1647.8866 0.88655673 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 9 0 1 63.766 63.766 3 0.034178 17213 TMT1-8 39.256 18.875 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10043 228 9947 15682 20491 20491 1 KAGGANYDAQTE Unmodified 1223.5418 0.54184461 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 1 4 0 1 32.241 32.241 2 0.0014132 7235 TMT1-3 92.428 55.981 46.699 50.389 43.436 20.506 50.587 52.922 44 51 44 22 51 51 1 1 1 1 1 1 8301.1 10044 1747 9948 15683 20492 20492 1 KAGGTGPGEEK Unmodified 1029.5091 0.50908792 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 1 5 0 1 28.56 28.56 3 0.010872 5533 TMT1-4 65.329 30.636 100.43 46.947 32.617 67.619 78.784 52.118 94 51 36 65 80 51 1 1 1 1 1 1 2884.3 10045 692 9949 15684 20493 20493 1 KAGKLDPHLVLDQLR Unmodified 1701.989 0.98898839 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 2 9 0 1 52.348 52.348 5 0.00085161 12709 TMT1-8 60.324 36.493 459.65 669.09 447.32 372.46 339.34 890.02 434 665 468 371 370 844 1 1 1 1 1 1 19196 10046 1019 9950 15685 20494 20494 1 KAGLSLK Unmodified 715.45922 0.4592246 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 1 9 0 1 41.165 41.165 3 0.028368 8518 TMT1-8 57.59 4.8735 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10047 1102 9951 15686 20495 20495 1 KAGNFYVPAEPK Unmodified 1319.6874 0.68738664 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 1 7 0 1 46.863 46.863 3 0.00014463 12282 TMT1-6 72.496 52.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10048 775 9952 15687 20496 20496 1 KAGQVIR Unmodified 770.47627 0.47627165 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 8 0 1 27.488 27.488 3 0.01599 4883 TMT1-7 81.297 18.149 161.76 134.06 111.72 110.66 96.651 144.35 152 138 116 109 102 138 1 1 1 1 1 1 31248 10049 972 9953 15688 20497 20497 1 KAGTQIENIEEDFR Unmodified 1648.8057 0.80566387 672;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;P35609-2;P35609 ACTN1;ACTN3;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-2 no no 0 0 0 0 1 4 0 1 52.556 52.556 3 1.1456E-10 15340 TMT1-3 127.05 104.57 556.13 713.5 965.66 713.24 917.75 770.11 527 721 964 721 934 747 3 3 3 3 3 3 128400 10050 672;1022 9954 15689 20498;20499;20500 20500 3 KAHAAIR Unmodified 765.46096 0.46095594 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 1 8 0 1 21.432 21.432 3 0.03774 3503 TMT1-7 64.757 40.126 23.242 41.624 25.866 16.465 30.565 32.174 22 41 27 17 31 31 1 1 1 1 1 1 1859.9 10051 1132 9955 15690 20501 20501 1 KAHGLLAEENR Unmodified 1236.6575 0.65748349 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 1 6 0 1 30.435 30.435 4 0.0038042 6410 TMT1-5 70.488 58.512 38.116 50.979 42.766 35.728 56.959 60.203 36 51 44 36 58 58 1 1 1 1 1 1 4263.4 10052 1805 9956 15691 20502 20502 1 KAHLGTALK Unmodified 937.5709 0.57090032 1424 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 1 9 0 1 35.034 35.034 4 0.014807 6483 TMT1-8 51.276 27.246 184.5 253.07 156.36 184.55 210.75 195.46 174 252 167 181 216 189 1 1 1 1 1 1 11407 10053 1424 9957 15692 20503 20503 1 KALAAAGYDVEK Unmodified 1234.6558 0.65575216 630;745;744 P10412;Q02539;P22492;P16402;P16403 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 0 0 0 0 1 7 0 3 45.893 45.893 2;3;4 9.7518E-05 11894 TMT1-6 107.97 68.662 490.02 551.38 492.06 446.21 634.94 590.57 462 557 506 446 646 571 3 3 3 3 3 3 262250 10054 630;744;745 9958 15693;15694;15695 20504;20505;20506 20505 3 KALAAGGYDVEK Unmodified 1220.6401 0.6401021 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 1 6.67 0.471 1 2 43.955 43.955 3;4 1.4698E-08 11168 TMT1-6 130.24 84.446 692.78 1373.8 883.75 699.85 901.35 717.28 657 1349 925 704 916 697 3 3 3 3 3 3 66298 10055 743 9959 15696;15697;15698 20507;20508;20509 20508 3 KALEETK Unmodified 817.45453 0.45453316 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q8IZP0-11 ABI1 Abl interactor 1 yes no 0 0 0 0 1 6 0 1 34.294 34.294 3 0.029415 7936 TMT1-5 69.812 15.262 493.06 520.46 547.39 484.16 650.16 522.98 465 529 557 484 660 508 1 1 1 1 1 1 15533 10056 2158 9960 15699 20510 20510 1 KALLLYK Phospho (STY) 927.51946 0.5194554 2151 Q8IYF3-2;Q8IYF3-3;Q8IYF3 TEX11 Testis-expressed sequence 11 protein yes no 0 0 0 1 1 9 0 1 72.052 72.052 3 0.042208 20540 TMT1-8 43.704 24.091 69.055 63.465 62.141 90.536 45.241 114.9 65 65 65 87 51 109 1 1 1 1 1 1 5959.7 10057 2151 9961 15700 20511 20511 27 1 KAMEAVAAQGK Unmodified 1102.5805 0.58047873 782 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 1 7 0 1 39.662 39.662 3 0.0053284 9462 TMT1-6 73.927 43.868 169.02 291.69 200.3 143.8 146.13 243.14 160 288 208 145 154 232 1 1 1 1 1 1 19392 10058 782 9962 15701 20512 20512 1 KAMEGAGTDEK Unmodified 1135.5179 0.51793805 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 5 0 1 33.07 33.07 3 0.041916 7286 TMT1-4 51.073 12.439 161.25 212.52 130.27 147.39 176.87 165.51 152 212 139 145 181 160 1 1 1 1 1 1 12061 10059 555 9963 15702 20513 20513 1 KANLQIDQINTDLNLER Unmodified 1997.0542 0.054167421 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 7 0.816 1 1 1 57.965 57.965 3 1.461E-42 17197 TMT1-5 197.1 175.74 602.21 1201.6 921.61 782.63 912.94 969.59 572 1182 950 782 939 934 5 5 4 5 5 5 395420 10060 1019 9964 15703;15704;15705 20514;20515;20516;20517;20518 20514 5 KANPDLPILIR Unmodified 1248.7554 0.75540662 192 O43678;O43678-2 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes no 0 0 0 0 1 8 0 1 53.318 53.318 3 0.026174 14894 TMT1-7 55.604 44.333 207 317.46 287.59 185.41 213.99 343.54 196 316 292 189 224 328 1 1 1 1 1 1 17175 10061 192 9965 15706 20519 20519 1 KAPDAGGCLHADPDLGVLCPTGCQLQEALLQQER Unmodified 3716.7709 0.77089841 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 6 0 1 65.798 65.798 4 6.0567E-11 20399 TMT1-5 74.446 67.786 15.793 36.914 19.448 46.289 34.245 37.399 15 36 22 44 36 36 1 1 1 1 1 1 18068 10062 438 9966 15707 20520 20520 1 KAPDFVFYAPR Unmodified 1309.6819 0.68190733 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 1 8.5 0.5 1 1 54.785 54.785 3 8.39E-07 15498 TMT1-7 129.84 106.52 1365.6 1783.5 1605.4 1699.7 2000 2264.7 1290 1788 1659 1677 2061 2178 3 3 3 3 3 3 171330 10063 894;720;1015 9967 15708;15709 20521;20522;20523 20521 3 KAPQPAKPR Unmodified 991.5927 0.59269839 2840 Q9UBN7;Q9UBN7-2 HDAC6 Histone deacetylase 6 yes no 0 0 0 0 2 9 0 1 27.16 27.16 4 0.014243 4400 TMT1-8 71.692 43.679 34.983 32.01 44.439 24.067 32.382 29.99 33 33 44 25 33 29 1 1 1 1 1 1 1424.6 10064 2840 9968 15710 20524 20524 1 KAPSDLYQIILK Unmodified 1387.8075 0.80750177 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 9 0 2 64.11 64.11 3;4 1.9732E-07 17311 TMT1-8 128.21 53.515 596.31 973.32 663.88 453.81 732.63 690.12 564 963 689 464 743 667 2 2 2 2 2 2 184600 10065 536 9969 15711;15712 20525;20526 20526 2 KAPVHVK Unmodified 777.48611 0.48610806 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 1 9 0 1 30.039 30.039 4 0.031236 4930 TMT1-8 48.504 22.767 61.44 72.324 72.105 50.096 71.747 67.243 58 73 73 51 73 65 1 1 1 1 1 1 1698.3 10066 543 9970 15713 20527 20527 1 KAPVLFNK Unmodified 915.55419 0.55418762 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 1 9 0 1 46.883 46.883 3 0.011482 10544 TMT1-8 81.594 32.798 331.76 407.07 342.98 361.66 488.84 389 313 409 356 358 496 378 1 1 1 1 1 1 23833 10067 1702 9971 15714 20528 20528 1 KAQCPIVER Unmodified 1099.5808 0.58081308 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 1 6 0 1 31.615 31.615 3 0.025274 6829 TMT1-5 61.213 35.554 84.505 131.8 112.62 102.26 133.67 174.21 80 131 116 102 138 167 1 1 1 1 1 1 15323 10068 1136 9972 15715 20529 20529 1 KAQQELEEQTR Unmodified 1358.679 0.6790068 894 P26038 MSN Moesin yes yes 0 0 0 0 1 3 0.816 1 1 1 32.008 32.008 3 4.8278E-06 6999 TMT1-3 122.46 80.418 2206.5 2822 2410.8 2068.3 3035.6 2316.1 2083 2830 2480 2076 3069 2254 5 5 5 5 5 5 189280 10069 894 9973 15716;15717;15718 20530;20531;20532;20533;20534 20533 5 KASDAEGDVAALNR Unmodified 1415.7005 0.70047052 1487 P67936-2 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 4 0 1 39.031 39.031 3 2.4492E-10 9907 TMT1-3 124.2 97.802 493.07 265.58 582.12 387.87 545.48 532.36 464 290 571 396 556 514 1 1 1 1 1 1 72123 10070 1487 9974 15719 20535 20535 1 KASDSELER Unmodified 1033.504 0.50400254 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 28.619 28.619 3 0.028396 5833 TMT1-3 59.542 27.019 99.759 122.79 81.273 112.04 119.64 112.78 94 123 87 109 123 109 1 1 1 1 1 1 7990.7 10071 1833 9975 15720 20536 20536 1 KASDVHEVR Unmodified 1039.5411 0.54105675 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 5 2.24 1 1 2 1 1 23.796 23.796 3;4 0.0003457 4087 TMT1-6 107.95 63.233 1147.4 1867.5 1599 1172.6 1567 1869.8 1087 1853 1635 1187 1611 1796 10 10 10 10 10 10 83998 10072 706;707 9976 15721;15722;15723;15724;15725;15726 20537;20538;20539;20540;20541;20542;20543;20544;20545;20546 20545 10 KASGPPVSELITK Unmodified 1325.7555 0.7554662 630;745;744 P10412;P16402;P16403 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 0 0 0 0 1 5.75 2.77 1 2 1 50.009 50.009 3;4 1.1872E-10 13476 TMT1-7 131.48 77.512 4487.7 4457.6 4080.4 6745.4 6046.2 10095 4226 4538 4317 6498 6408 9632 8 8 8 8 8 8 480040 10073 630;744;745 9977 15727;15728;15729;15730 20547;20548;20549;20550;20551;20552;20553;20554 20553 8 KASYLDCIR Unmodified 1124.5648 0.56482866 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 7 0 1 43.155 43.155 3 0.0095379 10789 TMT1-6 73.841 40.949 107.73 175.53 140.31 123.6 131.88 197.71 102 174 145 123 138 189 1 1 1 1 1 1 14381 10074 451 9978 15731 20555 20555 1 KATAAVIFLHGLGDTGHGWAEAFAGIR Unmodified 2765.4402 0.4401675 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 1 9 0 1 72.226 72.226 5 7.7953E-09 20544 TMT1-8 63.491 55.405 30.332 89.586 56.019 27.147 64.426 67.452 29 87 58 29 65 65 1 1 1 1 1 1 9195.5 10075 291 9979 15732 20556 20556 1 KATDAEADVASLNR Unmodified 1459.7267 0.72668527 593;551;552 P09493-3;P09493-10;P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 1 4 0 1 41.791 41.791 3 5.5958E-10 11100 TMT1-3 117.31 81.072 904.75 1119.3 999.28 805.59 898.57 961.47 854 1125 1023 807 926 926 2 2 2 2 2 2 171660 + 10076 593;551;552 9980 15733 20557;20558 20558 2 KATGAATPK Unmodified 843.48142 0.48141661 630 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 0 1 8 0 1 28.526 28.526 3 0.0048232 5241 TMT1-7 81.525 47.447 631.61 185.96 267.32 235.13 424.17 65.714 591 219 270 237 418 73 1 1 1 1 1 1 36227 10077 630 9981 15734 20559 20559 1 KATGDWFYDQK Unmodified 1357.6303 0.63026569 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 1 7 0 2 51.005 51.005 3;4 0.023809 13943 TMT1-6 57.106 25.717 315.88 400.15 311.94 268.18 326.98 414.94 298 401 323 268 338 398 2 2 2 2 2 2 28345 10078 2378 9982 15735;15736 20560;20561 20561 2 KATGPPVSELITK Unmodified 1339.7711 0.77111627 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 1 8 0 2 50.519 50.519 3;4 6.2497E-07 13868 TMT1-7 116.43 72.802 1049.4 1257.8 912.8 1062.4 999.47 1395.7 989 1263 962 1039 1048 1336 3 3 3 3 3 3 113960 10079 743 9983 15737;15738 20562;20563;20564 20564 3 KATQVGEK Unmodified 859.47633 0.47633123 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 7 0 1 30.464 30.464 3 0.022053 5836 TMT1-6 68.847 28.845 146.88 150.61 72.836 88.602 114.19 89.483 138 152 80 87 116 87 1 1 1 1 1 1 11891 10080 1225 9984 15739 20565 20565 1 KATVNLLGEEK Unmodified 1200.6714 0.67140222 1543 Q00765 REEP5 Receptor expression-enhancing protein 5 yes yes 0 0 0 0 1 7 0 1 47.72 47.72 3 0.0020129 12588 TMT1-6 84.173 63.792 281.52 430.48 291.06 286.89 270.19 429.35 266 427 306 283 285 410 1 1 1 1 1 1 40453 10081 1543 9985 15740 20566 20566 1 KAVASVAK Unmodified 772.48069 0.48068833 2419 Q96I99 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes yes 0 0 0 0 1 9 0 1 34.684 34.684 3 0.0013539 6333 TMT1-8 104.01 37.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10082 2419 9986 15741 20567 20567 1 KAVDVFFPPEAQNDFPVAMQISEK Unmodified 2706.3363 0.33633886 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 7 0 1 75.847 75.847 4 0.0012495 23692 TMT1-6 47.52 35.555 54.101 57.126 56.118 65.951 93.006 66.636 51 58 58 65 94 65 1 1 1 1 1 1 13155 10083 1540 9987 15742 20568 20568 1 KAVLFCLSEDK Unmodified 1308.6748 0.67477304 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 8 0 1 57.541 57.541 3 0.02189 16489 TMT1-7 58.326 20.226 168.37 357.88 253.02 304.18 226.8 329.32 160 351 267 296 241 315 1 1 1 1 1 1 1025200 10084 865 9988 15743 20569 20569 1 KAVLFCLSEDKK Unmodified 1436.7697 0.76973606 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 2 9 0 1 52.417 52.417 3 0.0021774 12729 TMT1-8 87.831 64.362 152.07 354.09 291.03 186.51 144.76 347.65 145 347 297 189 158 330 1 1 1 1 1 1 33664 10085 865 9989 15744 20570 20570 1 KAVPDAVESR Unmodified 1070.572 0.57202253 740 P16284-3;P16284-2;P16284 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 1 5 0 1 33.906 33.906 3 0.026175 7593 TMT1-4 58.476 35.25 123.08 136.56 118.02 140.33 184.51 196.21 116 138 123 138 189 189 1 1 1 1 1 1 11818 10086 740 9990 15745 20571 20571 1 KAVQGAQQPSLYQIR Unmodified 1685.9213 0.92130275 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 1 8 0 1 43.078 43.078 3 0.00016141 10882 TMT1-7 80.387 75.918 38.214 51.251 26.073 45.736 42.647 37.159 36 51 29 44 44 36 1 1 1 1 1 1 9639 10087 1666 9991 15746 20572 20572 1 KAVVVCPK Unmodified 899.52626 0.52625831 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 9 0 1 38.543 38.543 3 0.0052268 7569 TMT1-8 95.741 68.217 267.78 308.81 177.83 200.9 377.55 342.07 252 310 191 200 381 331 1 1 1 1 1 1 21893 10088 1545 9992 15747 20573 20573 1 KAYGQALAK Unmodified 948.53927 0.53926584 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 8.5 0.5 1 1 38.097 38.097 3 0.0010608 7488 TMT1-8 123.35 73.854 1203.8 1914.8 1278.9 1172 1276.3 1563.6 1138 1896 1342 1164 1323 1501 3 3 3 3 3 3 121490 10089 937 9993 15748;15749 20574;20575;20576 20575 3 KAYLEPEHTK Unmodified 1214.6295 0.62953741 2065 Q70IA6-2;Q70IA6;Q70IA6-3 MOB2 MOB kinase activator 2 yes no 0 0 0 0 1 6 0 1 35.279 35.279 4 0.037929 8347 TMT1-5 45.973 20.756 115.31 167.66 134.56 92.47 119.73 136.23 109 167 138 94 123 131 1 1 1 1 1 1 13873 10090 2065 9994 15750 20577 20577 1 KCAADLGLNK Unmodified 1088.5648 0.56482866 1203 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 1 8 0 1 43.159 43.159 3 0.0063797 10877 TMT1-7 75.695 39.736 208.03 278.24 147.48 225.78 196.79 272.61 196 277 162 218 207 261 1 1 1 1 1 1 16933 10091 1203 9995 15751 20578 20578 1 KCACASHVAK Unmodified 1130.5325 0.53248268 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 1 8 0 1 26.349 26.349 3 0.02062 4596 TMT1-7 61.65 32.886 7.3216 10.832 22.651 10.468 10.889 3.9533 7 11 22 11 11 4 1 1 1 1 1 1 925.36 10092 1897 9996 15752 20579 20579 1 KCAHILTK Unmodified 969.54297 0.54297101 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 1 9 0 1 34.512 34.512 4 0.0090084 6300 TMT1-8 58.676 24.79 107.92 160.95 120.5 53.621 137.77 119.72 102 160 123 58 138 116 1 1 1 1 1 1 3002.9 10093 3047 9997 15753 20580 20580 1 KCDISLQFFLPFSLGK Unmodified 1898.9964 0.99644153 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 9 0 1 82.845 82.845 3 0.00034505 24687 TMT1-8 62.813 42.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10094 676 9998 15754 20581 20581 1 KCDLISIPK Unmodified 1072.5951 0.59506616 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 8 0 1 50.895 50.895 2 0.01954 13976 TMT1-7 84.17 30.487 30.682 35.517 42.982 52.543 33.958 37.407 29 36 44 51 36 36 1 1 1 1 1 1 6387.7 10095 2913 9999 15755 20582 20582 1 KCEPIIMTVPR Unmodified 1342.7101 0.71011269 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C no no 0 0 0 0 1 8 0 1 47.652 47.652 2 0.002746 12676 TMT1-7 66.56 42.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10096 2913 10000 15756 20583 20583 1 KCEPIVMTVPR Unmodified 1328.6945 0.69446263 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 1 7 0 1 45.72 45.72 3 0.016044 11835 TMT1-6 62.042 36.03 169.73 178.18 176.73 97.044 207.83 214.73 160 181 178 102 210 207 1 1 1 1 1 1 6808 10097 2512 10001 15757 20584 20584 1 KCFDLISHDR Unmodified 1289.6187 0.61865515 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 1 7 0 1 41.598 41.598 4 0.047439 10169 TMT1-6 42.031 21.568 176.68 252.74 207.76 173.61 222.71 227.1 167 252 214 174 228 219 1 1 1 1 1 1 8182.9 10098 156 10002 15758 20585 20585 1 KCFPESYTTEATR Unmodified 1588.7192 0.71915705 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 1 6 0 1 41.366 41.366 3 0.0079902 10750 TMT1-5 63.128 48.442 61.076 110.16 101.31 47.95 93.284 82.618 58 109 102 51 94 80 1 1 1 1 1 1 11132 10099 1739 10003 15759 20586 20586 1 KCSTPEEIK Unmodified 1090.5329 0.53285983 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 1 5.5 0.5 1 1 35.119 35.119 3 0.014522 8060 TMT1-4 67.456 18.033 688.97 741.41 797.06 559.1 639.81 1028.6 650 753 804 566 670 982 2 2 2 2 2 2 49011 10100 1364 10004 15760;15761 20587;20588 20587 2 KCSVNLANK Unmodified 1032.5386 0.53861391 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 1 9 0 1 37.633 37.633 3 0.014662 7302 TMT1-8 72.321 18.752 92.256 108.21 92.262 55.867 107.82 105.66 87 109 94 58 109 102 1 1 1 1 1 1 6656.4 10101 1735 10005 15762 20589 20589 1 KCSVNLANKR Unmodified 1188.6397 0.63972494 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 2 9 0 1 32.764 32.764 4 0.029598 5728 TMT1-8 61.213 35.089 194.2 185.64 204.76 134.96 195.23 195.9 183 190 206 138 199 189 1 1 1 1 1 1 7569.3 10102 1735 10006 15763 20590 20590 1 KCVDIDECTQVQHLCSQGR Unmodified 2332.0358 0.035833294 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 5 0 1 42.027 42.027 4 6.8913E-05 10846 TMT1-4 66.264 54.642 99.638 107.34 114.73 86.123 113.24 120.42 94 109 116 87 116 116 1 1 1 1 1 1 29827 10103 1797 10007 15764 20591 20591 1 KCYEMASHLR Oxidation (M) 1309.5907 0.59072584 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 1 6 0 1 28.623 28.623 4 0.014671 5716 TMT1-5 59.426 53.185 77.363 109.6 69.445 57.8 77.367 106.52 73 109 73 58 80 102 1 1 1 1 1 1 3524.5 10104 540 10008 15765 20592 20592 97 1 KCYEMASHLR Unmodified 1293.5958 0.59581121 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 1 7.5 0.5 1 1 34.215 34.215 4 0.0013507 7331 TMT1-6 87.298 69.712 291.86 403.86 377.65 296.71 345.43 387.76 276 404 385 298 356 373 3 3 3 3 3 3 36623 10105 540 10008 15766;15767 20593;20594;20595 20593 3 KDAHSNLLAK Unmodified 1095.6037 0.60365701 263 O75323;O75323-2 GBAS Protein NipSnap homolog 2 yes no 0 0 0 0 1 7 0 1 36.416 36.416 4 0.025191 8150 TMT1-6 51.252 20.702 184.82 202.17 145.22 138.83 178.3 196.39 174 204 152 138 183 189 1 1 1 1 1 1 5549.2 10106 263 10009 15768 20596 20596 1 KDCEVVMMIGLPGAGK Unmodified 1703.8409 0.84086887 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 8 0 1 64.505 64.505 4 2.1225E-05 19292 TMT1-7 83.968 60.869 84.818 124.04 66.727 74.243 83.427 121.28 80 123 72 73 87 116 1 1 1 1 1 1 10223 10107 1545 10010 15769 20597 20597 1 KDDEENYLDLFSHK Unmodified 1751.8002 0.80024414 1610 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 1 5 0 1 58.548 58.548 4 0.00038891 17325 TMT1-4 76.85 56.759 175.47 377.8 305.83 184.05 286.68 360.66 167 371 312 190 294 346 1 1 1 1 1 1 28590 10108 1610 10011 15770 20598 20598 1 KDDLGDDLLQDFIEK Unmodified 1762.8625 0.86251005 2210 Q8ND71 GIMAP8 GTPase IMAP family member 8 yes yes 0 0 0 0 1 5 0 2 77.97 77.97 3;4 0.002906 24994 TMT1-4 61.226 35.079 76.126 117.85 90.004 95.389 105.75 113.18 72 117 94 94 109 109 2 2 2 2 2 2 8862.9 10109 2210 10012 15771;15772 20599;20600 20599 2 KDDLGDTNLHDYLR Unmodified 1673.8009 0.80091285 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 1 4.5 0.5 1 1 50.298 50.298 4 0.00018028 14108 TMT1-4 79.022 36.233 587.32 782.47 533.29 534.4 754.9 938.92 554 781 561 531 776 901 3 3 3 3 3 3 49964 10110 2753 10013 15773;15774 20601;20602;20603 20602 3 KDDPLTNLNTAFDVAEK Unmodified 1889.9371 0.93707198 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4.5 2.06 1 1 2 65.835 65.835 3;4 4.0994E-24 20317 TMT1-5 142.35 117.81 1930.5 2122.6 2145.4 1735.6 2273.5 2324 1821 2151 2181 1744 2326 2241 7 7 7 7 7 7 555380 10111 672 10014 15775;15776;15777;15778 20604;20605;20606;20607;20608;20609;20610 20608 7 KDDPTLLSSGR Unmodified 1187.6146 0.61461563 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 1 5 0 1 39.441 39.441 3 0.00011277 9825 TMT1-4 77.26 45.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10112 840 10015 15779 20611 20611 1 KDDPVTNLNNAFEVAEK Unmodified 1902.9323 0.93232095 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 1 5.67 0.471 1 2 60.421 60.421 3;4 1.8081E-24 18070 TMT1-4 149.34 99.182 454.52 596.72 469.14 417.95 408.75 574.64 429 597 486 415 428 550 5 5 5 5 5 5 92937 10113 195 10016 15780;15781;15782 20612;20613;20614;20615;20616 20612 5 KDDTDDEIAK Unmodified 1148.5197 0.51971219 920 P27824-2;P27824 CANX Calnexin yes no 0 0 0 0 1 2.5 0.5 1 1 37.951 37.951 3 0.0010127 10386 TMT1-2 96.82 35.476 306.07 498.78 434.18 331.39 472.6 354.28 290 495 444 335 478 345 2 2 2 2 2 2 42055 10114 920 10017 15783;15784 20617;20618 20618 2 KDEDLFR Unmodified 921.4556 0.45559579 285 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 1 5 0 1 41.446 41.446 3 0.020769 10593 TMT1-4 76.605 2.6735 405.88 713.62 609.64 488.1 534.1 698.98 385 706 625 489 555 670 1 1 1 1 1 1 68710 10115 285 10018 15785 20619 20619 1 KDEILGIANNR Unmodified 1241.6728 0.67279921 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 5.25 2.49 1 1 2 48.2 48.2 2;3 2.0327E-11 12752 TMT1-6 170.89 132.14 1991.6 2656.9 2590.7 2017 2402.8 2506.9 1883 2664 2634 2028 2468 2416 4 4 4 4 4 4 766470 10116 2112 10019 15786;15787;15788;15789 20620;20621;20622;20623 20622 4 KDGADFAK Unmodified 850.41848 0.418482 459;609 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 1 6 0 1 37.799 37.799 3 0.0057775 9310 TMT1-5 90.108 61.71 3968.7 5605.3 4856.7 3329.2 4780.6 5981.4 3752 5596 4955 3393 4913 5739 1 1 1 1 1 1 153680 10117 459;609 10020 15790 20624 20624 1 KDGLVSLLTTSEGADEPQR Unmodified 2015.0171 0.017113212 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 1 6 0 1 60.678 60.678 4 0.00041996 18408 TMT1-5 59.154 45.727 46.417 73.348 71.428 65.62 62.108 83.508 44 73 73 65 65 80 1 1 1 1 1 1 6363.8 10118 1242 10021 15791 20625 20625 1 KDGSCGVAYVVQEPGDYEVSVK Unmodified 2385.1158 0.11584098 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5 0 1 56.794 56.794 4 2.6983E-06 16605 TMT1-4 72.316 57.546 122.66 142.94 183.35 98.322 118.91 152.24 116 145 182 102 123 146 2 2 2 2 2 2 75376 10119 831 10022 15792 20626;20627 20626 2 KDGTHVVENVDATHIGK Unmodified 1818.9224 0.92242497 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 5.33 0.471 2 1 39.427 39.427 4;5 7.3112E-08 9793 TMT1-4 99.11 69.377 5677.8 7250.1 6564.8 4596.9 5885.5 7444.4 5362 7277 6685 4665 6073 7141 4 4 4 4 4 4 867820 10120 393 10023 15793;15794;15795 20628;20629;20630;20631 20628 4 KDHPFGFVAVPTK Unmodified 1441.7718 0.77178497 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 1 9 0 1 50.798 50.798 4 0.0022836 12117 TMT1-8 58.831 34.449 514.17 1084.1 669.9 640.21 623.65 1055.7 488 1062 708 633 659 1007 1 1 1 1 1 1 34347 10121 1480 10024 15796 20632 20632 1 KDHSFLGFEWQK Unmodified 1520.7412 0.74121312 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 1 8 0 1 56.861 56.861 4 0.016267 16271 TMT1-7 52.555 30.682 731.41 1127.1 910.57 692.87 896.57 896.51 692 1120 936 699 917 865 1 1 1 1 1 1 12224 10122 289 10025 15797 20633 20633 1 KDLQNFLK Unmodified 1004.5655 0.56548059 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 1 6 3.56 1 1 1 53.748 53.748 3 0.0016245 14944 TMT1-7 119.75 39.528 2921.3 4976.9 3077.4 3113.8 4493.6 4394.8 2763 4911 3262 3094 4577 4243 5 5 5 5 5 5 500610 10123 509 10026 15798;15799;15800 20634;20635;20636;20637;20638 20635 5 KDLTEYLSR Unmodified 1123.5873 0.58733824 120 O14979-3;O14979-2;O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 1 7 0 1 50.574 50.574 3 0.028344 13698 TMT1-6 59.57 28.912 192.12 217.26 167.47 152.61 188.64 272.84 181 219 174 152 196 261 1 1 1 1 1 1 8951.2 10124 120 10027 15801 20639 20639 1 KDLYANTVLSGGTTMYPGIADR Oxidation (M) 2358.1526 0.15256084 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 1 7.6 0.49 2 3 59.933 59.933 3;4 9.3378E-23 16912 TMT1-6 120.44 106.04 954.64 1375.7 1053.2 871.52 999.91 1547 902 1370 1090 872 1045 1478 8 8 8 8 8 8 643650 10125 1357;1479 10028 15802;15803;15804;15805;15806 20640;20641;20642;20643;20644;20645;20646;20647 20642 217 8 KDLYANTVLSGGTTMYPGIADR Unmodified 2342.1576 0.15764621 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 1 7.83 0.687 2 3 1 62.366 62.366 3;4 1.3033E-37 18419 TMT1-6 154.13 134.23 1964.1 2968.3 2087.7 2180.2 2465.2 3121.3 1856 2947 2193 2151 2555 2994 12 12 12 12 12 12 2502600 10126 1357;1479 10028 15807;15808;15809;15810;15811;15812 20648;20649;20650;20651;20652;20653;20654;20655;20656;20657;20658;20659 20651 12 KDNDFIYHDR Unmodified 1321.6051 0.60511357 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 4.5 0.5 1 1 36.061 36.061 4 0.012513 8490 TMT1-4 60.305 23.881 269.13 325.87 297.77 205.9 312.81 332.19 254 328 303 210 319 320 2 2 2 2 2 2 26936 10127 2267 10029 15813;15814 20660;20661 20661 2 KDNSNSLQVK Unmodified 1131.5884 0.58840088 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 1 7 0 1 36.457 36.457 3 0.0030854 8168 TMT1-6 84.506 43.917 107.84 171.52 124.65 140.47 156.01 142.66 102 170 131 138 160 138 1 1 1 1 1 1 11498 10128 2085 10030 15815 20662 20662 1 KDPDALLK Unmodified 898.51238 0.51238239 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 1 6 0 1 45.847 45.847 3 0.0069903 12503 TMT1-5 51.762 28.443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10129 817 10031 15816 20663 20663 1 KDPEQEVEK Unmodified 1100.535 0.53496832 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 1 4 0 1 36.218 36.218 3 0.035434 8819 TMT1-3 55.776 8.7373 246.15 274.18 236.5 220.38 318.09 280.88 232 277 244 220 323 272 1 1 1 1 1 1 16281 10130 2568 10032 15817 20664 20664 1 KDPEVFQTVSEGLK Unmodified 1575.8144 0.81443765 2802 Q9NZN3;Q9NZN3-2 EHD3 EH domain-containing protein 3 yes no 0 0 0 0 1 6 0 1 56.453 56.453 3 0.0074007 16697 TMT1-5 60.968 26.013 68.631 124.88 81.312 111.86 129.34 74.127 65 123 87 109 131 73 1 1 1 1 1 1 14697 10131 2802 10033 15818 20665 20665 1 KDQGELER Unmodified 973.48287 0.48287317 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3 0.816 1 1 1 28.342 28.342 3 0.0019042 6458 TMT1-1 110.14 62.292 1087.7 1751.6 1451.8 1336.2 1357.6 1627.4 1030 1738 1499 1325 1410 1563 6 6 6 6 6 6 144350 10132 1019 10034 15819;15820;15821 20666;20667;20668;20669;20670;20671 20667 6 KDQNPAECK Unmodified 1088.4921 0.49205765 1315;1316 P55209;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 1 5 0 1 30.595 30.595 3 0.0030262 6311 TMT1-4 89.403 31.444 85.059 50.237 88.741 43.784 122.16 39.154 80 54 87 47 120 40 1 1 1 1 1 1 4360.5 10133 1315;1316 10035 15822 20672 20672 1 KDSETGENIR Unmodified 1147.5469 0.54692999 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 1 3 0.816 1 1 1 28.144 28.144 3 0.00010598 6313 TMT1-1 122.42 61.989 389.91 672.79 443.3 392.89 486.21 545.78 369 664 465 392 500 525 3 3 3 3 3 3 48182 10134 1058 10036 15823;15824;15825 20673;20674;20675 20673 3 KDSQICELK Unmodified 1119.5594 0.55940893 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 6 0 1 41.111 41.111 3 0.0032693 10641 TMT1-5 88.338 52.827 201.56 378.06 248.51 180.27 262.49 278.2 191 372 259 183 268 268 1 1 1 1 1 1 20967 10135 1313 10037 15826 20676 20676 1 KDSSLCK Unmodified 836.4062 0.40620276 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 7 0 1 33.572 33.572 3 0.0078019 7031 TMT1-6 52.482 6.8018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10136 451 10038 15827 20677 20677 1 KDTDFEHR Unmodified 1046.4781 0.47812215 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 1 4 0 1 28.443 28.443 4 0.040695 5739 TMT1-3 48.283 24.128 54.25 33.795 50.915 44.122 49.757 45.484 51 36 51 44 51 44 1 1 1 1 1 1 2471.9 10137 765 10039 15828 20678 20678 1 KDVGRPQPGR Unmodified 1108.6101 0.61013937 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 2 9 0 1 24.531 24.531 4 0.0036997 4102 TMT1-8 89.403 63.285 34.888 50.092 45.193 31.375 48.249 45.527 33 50 46 32 49 44 2 2 2 2 2 2 2176.9 10138 1052 10040 15829 20679;20680 20679 2 KDVLETFTVK Unmodified 1178.6547 0.65468953 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 1 5.33 3.09 1 1 1 59.404 59.404 3 0.00013428 17236 TMT1-7 117.98 54.692 9055.6 12632 12640 8143.2 10371 15453 8569 12645 12760 8318 10780 14774 5 5 5 5 5 5 896960 10139 835 10041 15830;15831;15832 20681;20682;20683;20684;20685 20685 5 KDWLFAPHYR Unmodified 1331.6775 0.67749065 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 1 9 0 1 50.393 50.393 4 0.018829 11954 TMT1-8 46.844 30.074 53.912 56.601 88.265 49.423 56.33 60.221 51 58 87 51 58 58 1 1 1 1 1 1 5207 10140 1810 10042 15833 20686 20686 1 KDYEEIGPSICR Unmodified 1465.6871 0.68712864 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 4 0 1 44.554 44.554 3 0.0029296 12089 TMT1-3 74.649 54.267 368.94 476.87 345.8 345.96 326.38 450.13 348 477 362 341 342 431 2 2 2 2 2 2 61429 10141 1379 10043 15834 20687;20688 20687 2 KEAAENSLVAYK Unmodified 1321.6878 0.68778057 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 1 6 0 2 45.748 45.748 3;4 0.0001589 12476 TMT1-5 93.011 63.708 260.55 484.23 342.89 292.18 347.71 357.85 247 477 357 292 357 345 2 2 2 2 2 2 42602 10142 1422 10044 15835;15836 20689;20690 20690 2 KEAESSPFVER Unmodified 1277.6252 0.62518031 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 4.5 0.5 1 1 37.035 37.035 3 6.6823E-08 9147 TMT1-3 108.32 65.527 257.32 293.03 145.62 266.39 193.67 308.94 242 294 163 255 207 295 1 1 1 1 1 1 20060 10143 708 10045 15837;15838 20691;20692 20691 2 KEALQQK Unmodified 843.48142 0.48141661 2983 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 0 1 7 0 1 33.938 33.938 3 0.0096099 7185 TMT1-6 90.37 20.371 216.34 113.75 151.76 107.53 136.1 96.32 203 123 152 109 138 94 1 1 1 1 1 1 5007.4 10144 2983 10046 15839 20693 20693 1 KEASDPQPEEADGGLK Unmodified 1669.7795 0.7795087 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 1 3.5 0.5 2 2 39.467 39.467 3;4 3.7425E-08 10035 TMT1-3 104.2 85.831 472.06 580.39 420.18 444.12 450.96 620.34 445 582 441 437 471 594 4 4 4 4 4 4 58971 10145 1277 10047 15840;15841;15842;15843 20694;20695;20696;20697 20696 4 KECVECK Unmodified 951.41539 0.41538723 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 5 0 1 31.953 31.953 3 0.041272 6839 TMT1-4 63.216 35.007 391.71 182.22 376.43 222.74 388.8 167.99 368 202 369 231 387 168 1 1 1 1 1 1 21568 10146 484 10048 15844 20698 20698 1 KEDAENLAAAQR Unmodified 1314.6528 0.65279205 3053 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes yes 0 0 0 0 1 4 0 1 36.102 36.102 3 0.0092318 8764 TMT1-3 64.224 36.889 99.547 107.09 130.3 101.3 128.76 105.06 94 109 131 102 131 102 1 1 1 1 1 1 10449 10147 3053 10049 15845 20699 20699 1 KEDALLYQSK Unmodified 1193.6292 0.62920306 1218 P50402 EMD Emerin yes yes 0 0 0 0 1 6 0 1 45.559 45.559 3 0.01839 12406 TMT1-5 62.924 18.933 372.39 355.14 230.46 305.45 230.66 520.02 350 361 247 296 251 494 1 1 1 1 1 1 26791 10148 1218 10050 15846 20700 20700 1 KEDEVEEWQHR Unmodified 1483.6692 0.66917039 720 P15311 EZR Ezrin yes yes 0 0 0 0 1 3 0 1 36.681 36.681 4 0.00492 9953 TMT1-2 66.498 47.665 129.75 223.29 185.77 105.02 161.78 235.23 123 221 189 109 167 225 1 1 1 1 1 1 17163 10149 720 10051 15847 20701 20701 1 KEDGTFYEFGEDIPEAPER Unmodified 2227.991 0.99095804 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 3 0 1 59.895 59.895 3 1.383E-09 19153 TMT1-2 97.488 83.897 30.512 51.232 58.3 27.572 34.556 53.38 29 51 58 29 36 51 1 1 1 1 1 1 13462 10150 203 10052 15848 20702 20702 1 KEDLVFIFWAPESAPLK Unmodified 1989.0612 0.061150279 865 P23528;Q9Y281-3;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 1 8.4 0.49 3 2 81.614 81.614 3;4 1.0575E-10 24022 TMT1-8 103.63 71.992 2177.7 2651.8 2528 1928.9 2462.5 3199.2 2056 2670 2573 1945 2544 3067 9 9 9 9 9 9 840280 10151 865 10053 15849;15850;15851;15852;15853 20703;20704;20705;20706;20707;20708;20709;20710;20711 20709 9 KEECPAVR Unmodified 987.48076 0.48076468 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 4 0 1 27.516 27.516 3 0.0055457 5339 TMT1-3 90.64 50.542 425.54 538.05 340.03 362.3 347.89 411.14 401 538 361 356 362 395 2 2 2 2 2 2 56421 10152 530 10054 15854 20712;20713 20712 2 KEEEEEEEEYDEGSNLK Unmodified 2084.8546 0.85458372 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 1 2 0 1 44.367 44.367 3 6.3186E-08 12679 TMT1-1 102.69 89.369 23.25 28.695 35.478 36.714 27.613 30.126 22 29 36 36 29 29 1 1 1 1 1 1 5929.2 10153 1759 10055 15855 20714 20714 1 KEEELQAALAR Unmodified 1256.6725 0.67246486 1019;1029;2091 P35579;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 no no 0 0 0 0 1 4.8 2.32 1 1 1 1 1 45.597 45.597 3 7.4435E-06 12238 TMT1-4 117.79 67.309 9206.7 12889 12275 8630.5 11940 13622 8709 12890 12458 8771 12241 13098 7 7 7 7 7 7 1256000 10154 1019;1029;2091 10056 15856;15857;15858;15859;15860 20715;20716;20717;20718;20719;20720;20721 20719 7 KEEGEAFAR Unmodified 1035.4985 0.49852324 1370 P61019;P61019-2 RAB2A Ras-related protein Rab-2A yes no 0 0 0 0 1 4 0 1 32.508 32.508 3 0.0020571 7327 TMT1-3 94.767 42.189 509.14 610.16 654.01 494.16 536.16 569.93 481 616 661 497 553 549 1 1 1 1 1 1 45609 10155 1370 10057 15861 20722 20722 1 KEEITGTLR Unmodified 1045.5768 0.57677356 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6 0.816 1 1 1 38.756 38.756 3 0.00057491 9670 TMT1-5 112.13 59.551 7422.3 10059 9634.8 7894.7 9394.3 10968 7018 10076 9822 7910 9688 10540 4 4 4 4 4 4 1109400 10156 3010 10058 15862;15863;15864 20723;20724;20725;20726 20725 4 KEELMFFLWAPELAPLK Unmodified 2061.1009 0.1009066 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 1 9 0 2 89.949 89.949 3;4 1.7253E-10 27376 TMT1-8 99.569 56.545 184.65 176.86 195.59 135.18 212.47 272.16 174 181 197 138 218 261 3 3 3 3 3 3 48579 10157 1364 10059 15865;15866 20727;20728;20729 20727 3 KEELTLEGIK Unmodified 1158.6496 0.64960415 1765 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 1 6 0 1 51.673 51.673 3 0.010801 14822 TMT1-5 68.463 27.874 354.65 413.02 276.94 327.76 408.39 492.56 334 415 294 322 421 473 1 1 1 1 1 1 28024 10158 1765 10060 15867 20730 20730 1 KEELVAEQALK Unmodified 1256.6976 0.69761697 3055 Q9Y6E2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes yes 0 0 0 0 1 5 0 1 47.498 47.498 3 0.011322 13021 TMT1-4 65.043 0 84.086 161.94 157.55 121.98 163.38 165.9 80 160 160 123 167 160 1 1 1 1 1 1 8685.7 10159 3055 10061 15868 20731 20731 1 KEEPSNNVK Unmodified 1043.5247 0.52473799 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 1 5 0 1 30.064 30.064 3 0.013484 6105 TMT1-4 68.786 34.407 250.02 172.18 212.25 172.97 242.48 109.27 235 181 214 174 243 109 1 1 1 1 1 1 12320 10160 1803 10062 15869 20732 20732 1 KEESEESDDDMGFGLFD Unmodified 1948.752 0.7520329 495;494 P05387;P05386-2;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 no no 0 0 0 0 1 2 0 1 71.846 71.846 3 0.0044308 23288 TMT1-1 54.598 44.259 16.001 0 15.856 6.5938 5.9633 30.744 15 0 15 7 7 29 1 0 1 1 1 1 1905.8 10161 495;494 10063 15870 20733 20733 1 KEFSIDVGYER Unmodified 1341.6565 0.65648044 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 5 0 1 50.386 50.386 3 0.002242 14136 TMT1-4 82.705 48.326 227.05 433.86 245.04 228.74 311.71 424.97 215 426 261 228 322 407 1 1 1 1 1 1 34482 10162 1379 10064 15871 20734 20734 1 KEGGLGPLNIPLLADVTR Unmodified 1862.0625 0.062547262 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 1 8 0 2 72.917 72.917 3;4 3.16E-14 22599 TMT1-7 124.43 111.83 519.17 728.34 672.47 526.8 543.5 739.22 491 728 686 528 567 708 4 4 4 4 4 4 146990 10163 989 10065 15872;15873 20735;20736;20737;20738 20735 4 KEHNELQQK Unmodified 1152.5887 0.58873523 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 1 5 0 1 27.792 27.792 4 0.006025 5237 TMT1-4 71.889 35.364 84.927 70.377 93.823 72.597 85.078 75.39 80 73 94 73 87 73 1 1 1 1 1 1 2273.1 10164 3011 10066 15874 20739 20739 1 KEIHTVPDMGK Unmodified 1253.6438 0.64380726 1838 Q15257-2;Q15257;Q15257-3;Q15257-4 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 1 6 0 1 38.978 38.978 4 0.0040764 9777 TMT1-5 69.451 36.953 169.58 205.83 178.69 112.85 174.87 330.8 160 207 182 116 183 315 1 1 1 1 1 1 13581 10165 1838 10067 15875 20740 20740 1 KELEEDFIK Unmodified 1149.5918 0.59175492 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 1 4.5 0.5 1 1 52.923 52.923 3 0.0029348 15199 TMT1-4 89.805 46.995 1433.1 1907 1522.8 1266.9 1385.3 1796.1 1353 1907 1572 1266 1439 1722 3 3 3 3 3 3 233340 10166 1747 10068 15876;15877 20741;20742;20743 20743 3 KELIINEILVMK Unmodified 1441.8578 0.85782279 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 1 8.5 0.5 1 1 73.756 73.756 3 0.00031979 21098 TMT1-8 95.264 70.048 154.09 165.45 110.63 93.903 119.39 174.62 145 167 116 94 124 167 2 2 2 2 2 2 13567 10167 1680 10069 15878;15879 20744;20745 20745 2 KELNYFAK Unmodified 1011.5389 0.53893149 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 8 0 1 48.24 48.24 3 0.0043516 12897 TMT1-7 94.692 56.124 1151.7 1776 1323.9 1205.2 1404.3 1568.5 1089 1763 1377 1199 1447 1509 2 2 2 2 2 2 71746 10168 397 10070 15880 20746;20747 20746 2 KELSDIAHR Unmodified 1067.5724 0.57235688 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 5.5 0.5 1 1 34.046 34.046 4 0.00067678 7655 TMT1-4 100.48 69.403 616.59 964.42 1051.4 655.02 777.56 1001.2 585 962 1055 670 805 960 2 2 2 2 2 2 56694 10169 459 10071 15881;15882 20748;20749 20748 2 KELSLLVLLPDDGVELSTVEK Unmodified 2296.2777 0.27774457 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 1 7 0 1 81.169 81.169 3 2.567E-06 25782 TMT1-6 78.354 70.066 30.725 35.635 35.72 21.089 44.037 29.657 29 36 36 22 44 29 1 1 1 1 1 1 6230.2 10170 1222 10072 15883 20750 20750 1 KEMQPTHPIR Oxidation (M) 1251.6394 0.63939059 1471;909;984 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 1 0 1 6 0 1 24.02 24.02 4 0.041848 4083 TMT1-5 45.908 11.655 61.649 72.903 36.6 44.784 59.925 83.57 58 73 40 44 62 80 1 1 1 1 1 1 4434.7 10171 909;984;1471 10073 15884 20751 20751 172 1 KEMQPTHPIR Unmodified 1235.6445 0.64447597 1471;909;984 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 0 0 1 7 0 1 28.945 28.945 4 0.0098741 5233 TMT1-6 63.073 40.432 115.17 167.28 158.05 99.979 110.99 167.39 109 167 160 102 116 160 2 2 2 2 2 2 8724.1 10172 909;984;1471 10073 15885 20752;20753 20752 2 KENPLQFK Unmodified 1002.5498 0.54983053 720;1015 P15311;P35241;P35241-5;P35241-3 EZR;RDX Ezrin;Radixin no no 0 0 0 0 1 8 0 1 46.308 46.308 3 0.0093299 12143 TMT1-7 81.95 51.387 1034.6 1919.4 1047.7 933.7 1314 1608.4 979 1886 1118 934 1350 1544 1 1 1 1 1 1 82745 10173 720;1015 10074 15886 20754 20754 1 KEPAVLELEGK Unmodified 1211.6762 0.67615325 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 4.6 1.85 1 2 2 50.835 50.835 2;3;4 2.7888E-06 14334 TMT1-5 126.1 92.129 2818.3 4099.6 3462 2984.8 3741.1 4031.5 2665 4086 3563 2984 3840 3882 7 7 7 7 7 7 560220 10174 1555;1556 10075 15887;15888;15889;15890;15891 20755;20756;20757;20758;20759;20760;20761 20760 7 KEPVYLSGYGVELAIK Unmodified 1764.9662 0.96618726 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 1 7 0 1 64.909 64.909 3 5.4648E-09 19407 TMT1-6 114.56 93.027 53.647 94.718 100.51 87.523 83.879 90.348 51 94 102 87 87 87 1 1 1 1 1 1 14774 10175 2789 10076 15892 20762 20762 1 KESEAVEWQQK Unmodified 1360.6623 0.6622941 894 P26038 MSN Moesin yes yes 0 0 0 0 1 5 0 1 41.627 41.627 3 0.0004062 10718 TMT1-4 98.942 88.088 84.486 123.12 123.21 46.364 108.26 105.64 80 123 123 51 109 102 1 1 1 1 1 1 12436 10176 894 10077 15893 20763 20763 1 KESPLLFK Unmodified 960.56442 0.56441796 894 P26038 MSN Moesin yes yes 0 0 0 0 1 8.5 0.5 1 1 50.281 50.281 3 0.0071754 13671 TMT1-7 86.898 34.319 2165.3 3677.1 2662.6 2263.4 3020.5 3255.7 2050 3635 2768 2268 3094 3135 3 3 3 3 3 3 259930 10177 894 10078 15894;15895 20764;20765;20766 20764 3 KESYSIYVYK Unmodified 1278.6496 0.64960415 524;2168 Q16778;P06899;P33778;P23527;Q6DRA6;Q6DN03;Q8N257 HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B no no 0 0 0 0 1 6.6 2.87 1 1 2 1 50.044 50.044 3;4 0.00024379 13529 TMT1-7 107.09 71.674 8599.4 13981 9542.1 10315 13098 13105 8133 13835 10059 10183 13405 12644 7 7 7 7 7 7 684650 10178 524;2168 10079 15896;15897;15898;15899;15900 20767;20768;20769;20770;20771;20772;20773 20770 7 KESYSVYVYK Unmodified 1264.634 0.63395408 239;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 0 1 6.86 2.47 1 2 3 1 47.598 47.598 2;3;4 2.3088E-05 12572 TMT1-7 152.54 112.92 6385.9 10631 6606.3 8115.6 9745.4 9555.8 6038 10500 7059 7953 9987 9225 11 11 11 11 11 11 1575800 10179 239;2498 10080 15901;15902;15903;15904;15905;15906;15907 20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784 20783 11 KETFDVTLEPLSFK Unmodified 1652.8661 0.86613887 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 7.5 0.5 1 1 67.845 67.845 3 2.211E-05 20645 TMT1-6 97.073 25.542 935.33 1095.2 1110.5 670.42 817.63 1245.2 883 1106 1119 688 852 1190 2 2 2 2 2 2 272660 10180 393 10081 15908;15909 20785;20786 20785 2 KETSGTQGIEGHLK Unmodified 1483.7631 0.76307078 1331 P56181-2 yes yes 0 0 0 0 1 6 0 1 35.803 35.803 4 0.00035315 8508 TMT1-5 77.222 59.734 146.54 126.98 150.98 115.02 147.23 188.74 138 131 152 116 152 181 1 1 1 1 1 1 9206.4 10181 1331 10082 15910 20787 20787 1 KETVESHFR Unmodified 1131.5673 0.5672715 328 O94886 TMEM63A CSC1-like protein 1 yes yes 0 0 0 0 1 6 0 1 33.213 33.213 4 0.0015565 7457 TMT1-5 90.142 67.123 152.98 248.69 227.6 173.63 158.62 235.32 145 247 232 174 167 225 1 1 1 1 1 1 13327 10182 328 10083 15911 20788 20788 1 KEVEVVEIIQATIIR Unmodified 1739.0193 0.019285464 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 1 7 0 1 78.109 78.109 3 0.00031338 24576 TMT1-6 78.166 59.108 177.36 220.1 120.98 125.27 162.2 195.78 167 220 130 124 167 188 2 2 2 2 2 2 13787 10183 1796 10084 15912 20789;20790 20790 2 KEVYFMAIIDILTHYDAK Unmodified 2169.118 0.11801323 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 1 9 0 1 89.869 89.869 4 1.151E-07 27380 TMT1-8 77.514 54.861 92.448 85.001 79.768 27.511 100.75 105.86 87 87 80 29 101 102 2 2 2 1 2 2 6811.7 10184 1152;1153 10085 15913 20791;20792 20791 2 KEWSGLLEELAR Unmodified 1429.7565 0.75652884 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 1 7 0 1 67.674 67.674 3 0.0046172 20458 TMT1-6 70.165 38.775 198.56 299.04 277.55 217.96 200.79 288.49 188 298 283 218 211 276 2 2 2 2 2 2 39525 10185 1559 10086 15914 20793;20794 20793 2 KEYGGLDVLVNNAGIAFK Unmodified 1907.0153 0.015262719 735 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 0 0 0 1 8 0 1 70.15 70.15 4 0.0083382 21550 TMT1-7 47.397 30.712 61.08 110.18 100.61 63.588 77.65 90.526 58 109 102 65 80 87 1 1 1 1 1 1 12766 10186 735 10087 15915 20795 20795 1 KEYITAK Unmodified 851.47527 0.4752686 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 8 0 1 38.897 38.897 3 0.013657 9212 TMT1-7 84.615 27.055 137.95 289.63 194.13 191.35 194.38 236.44 131 284 204 189 202 227 1 1 1 1 1 1 7025.4 10187 2911 10088 15916 20796 20796 1 KFAADAVK Unmodified 848.4756 0.47560295 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 7 0 1 40.792 40.792 3 0.022002 9916 TMT1-6 68.893 10.289 153.24 201.93 223.2 165.17 215.57 263.55 145 203 225 167 222 253 1 1 1 1 1 1 9379.6 10188 1053 10089 15917 20797 20797 1 KFAEAFEAIPR Unmodified 1277.6768 0.67682195 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 1 8 0 1 57.061 57.061 3 0.00018443 16382 TMT1-7 102.73 78.982 301.09 549.85 327.13 358.68 464.73 516.54 285 541 349 354 477 497 1 1 1 1 1 1 29118 10189 1232 10090 15918 20798 20798 1 KFAETQPK Unmodified 947.50763 0.50763136 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 7.5 0.5 1 1 35.92 35.92 3 0.016125 8134 TMT1-6 74.173 34.128 618.48 1183.7 908.76 767.38 776.34 977.75 587 1166 940 765 808 938 3 3 3 3 3 3 58379 10190 904 10091 15919;15920 20799;20800;20801 20800 3 KFAYGYIEDLK Unmodified 1345.6918 0.69180331 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 1 7.67 0.471 1 2 60.13 60.13 3;4 0.00026304 17554 TMT1-7 101.39 46.215 730.97 1064.2 858.57 706.3 870.36 940.96 691 1060 885 708 894 906 4 4 4 4 4 4 91412 10191 967 10092 15921;15922;15923 20802;20803;20804;20805 20803 4 KFDLGQDVIDFTGHALALYR Unmodified 2278.1746 0.17461691 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 1 8.5 0.5 1 1 79.3 79.3 4 8.1593E-24 25208 TMT1-7 136.58 121.96 692.78 719.99 535.67 528.83 694.82 746.63 652 729 560 525 712 719 5 5 5 5 5 5 163700 10192 1217;972 10093 15924;15925 20806;20807;20808;20809;20810 20807 5 KFDLNSPWEAFPVYR Unmodified 1867.9257 0.92571943 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 1 9 0 1 70.74 70.74 3 0.017206 19938 TMT1-8 53.861 29.192 84.226 122.39 167.51 121.64 149.56 111.93 80 123 167 123 152 109 1 1 1 1 1 1 19616 10193 281 10094 15926 20811 20811 1 KFDQLLAEEK Unmodified 1219.6449 0.64485312 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 1 5.25 2.49 1 1 2 54.65 54.65 3;4 0.00016916 15240 TMT1-6 114.24 69.475 12769 18041 15563 12374 15482 19624 12071 18010 15953 12436 15989 18823 8 8 8 8 8 8 853630 10194 1019;1020;1029;2091 10095 15927;15928;15929;15930 20812;20813;20814;20815;20816;20817;20818;20819 20817 8 KFDTLWQLVEHYSYK Unmodified 1955.9781 0.97814893 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 1 9 0 1 75.753 75.753 4 0.00039192 21918 TMT1-8 60.768 42.968 61.421 87.381 62.514 50.816 63.851 52.544 58 87 65 51 65 51 1 1 1 1 1 1 9299.6 10195 1115 10096 15931 20820 20820 1 KFDVNTSAVQVLIEHIGNLDR Unmodified 2367.2547 0.25465814 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 8.5 0.5 1 1 76.601 76.601 4 9.1797E-11 24174 TMT1-7 100.76 83.612 415.37 390.34 369.91 280.46 362.01 353.18 391 399 377 283 370 341 4 4 4 4 4 4 80541 10196 1540 10097 15932;15933 20821;20822;20823;20824 20821 4 KFFLSHPAYR Unmodified 1264.6717 0.671677 1226;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM3 Dynamin-2;Dynamin-3 no no 0 0 0 0 1 9 0 1 42.571 42.571 4 0.0010159 8995 TMT1-8 83 60.26 161.55 157.23 126.63 109.2 126.83 150.95 152 160 131 109 131 145 1 1 1 1 1 1 10322 10197 1226;2942 10098 15934 20825 20825 1 KFFVGGNWK Unmodified 1081.5709 0.57090032 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 1 9 0 1 55.437 55.437 3 0.0035625 13881 TMT1-8 101.46 73.251 1374.1 1887.4 1530.4 1373.9 1602 2014.9 1298 1885 1582 1368 1658 1933 2 2 2 2 2 2 99967 10198 1352 10099 15935 20826;20827 20826 2 KFFYSDQNVDSR Unmodified 1504.6947 0.69465686 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 7.33 0.471 2 1 45.948 45.948 3;4 1.2388E-05 11941 TMT1-6 111.72 88.481 1579.3 1922.1 2001.2 1396.3 1824.3 1938.2 1492 1938 2021 1418 1869 1867 5 5 5 5 5 5 168500 10199 3010;3014 10100 15936;15937;15938 20828;20829;20830;20831;20832 20828 5 KFFYSDQNVDSRDPVQLNLLYVQAR Unmodified 3014.525 0.52501934 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 2 9 0 1 66.625 66.625 4 2.1308E-38 18309 TMT1-8 135.34 119.4 177.3 191.87 155.25 122.57 139.11 201.77 167 194 160 123 145 193 1 1 1 1 1 1 60492 10200 3010;3014 10101 15939 20833 20833 1 KFGDPVVQSDMK Unmodified 1349.6649 0.66493664 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 7 0 1 48.296 48.296 3 0.0019724 12852 TMT1-6 77.192 53.205 215.64 255.33 150.24 145.21 229.74 273.8 203 256 160 145 235 263 1 1 1 1 1 1 20053 10201 618 10102 15940 20834 20834 1 KFGPVVAPKPK Unmodified 1166.7176 0.71756456 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 2 9 0 1 43.603 43.603 4 0.02046 9354 TMT1-8 63.212 29.803 218.87 226.01 172.59 265.67 146.73 245.26 206 229 184 255 160 234 1 1 1 1 1 1 10839 10202 1881 10103 15941 20835 20835 1 KFGYVDFESAEDLEK Unmodified 1775.8254 0.82539626 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 5.67 0.471 1 2 63.101 63.101 3;4 1.1982E-05 19185 TMT1-4 96.78 61.826 392.87 593.96 373.44 366.58 421.31 551.89 371 589 395 363 437 529 4 4 4 4 4 4 75453 10203 786 10104 15942;15943;15944 20836;20837;20838;20839 20836 4 KFHTVSGSK Unmodified 989.52943 0.52942943 2487 Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 1 9 0 1 31.353 31.353 4 0.026859 5296 TMT1-8 43.512 25.604 96.624 100.57 86.06 107.72 101.91 86.636 91 102 90 105 105 84 2 2 2 2 2 2 2447 10204 2487 10105 15945 20840;20841 20841 2 KFHYLPFLPSTEDVYDCR Unmodified 2286.0779 0.07793933 427 P01903 HLA-DRA HLA class II histocompatibility antigen, DR alpha chain yes yes 0 0 0 0 1 8 0 1 63.101 63.101 4 0.013256 18799 TMT1-7 42.679 35.463 99.565 114.69 120.81 109.84 111.6 136.46 94 116 123 109 116 131 1 1 1 1 1 1 25324 10205 427 10106 15946 20842 20842 1 KFICPLTGLWPINTLK Unmodified 1900.0645 0.064461518 441 P02749 APOH Beta-2-glycoprotein 1 yes yes 0 0 0 0 1 9 0 1 78.115 78.115 3 0.00055167 22855 TMT1-8 58.159 38.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10206 441 10107 15947 20843 20843 1 KFKDPNAPK Unmodified 1043.5764 0.57637963 588;863 P09429;B2RPK0;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 no no 0 0 0 0 2 9 0 1 36.199 36.199 4 0.027944 6806 TMT1-8 64.04 32.401 631.27 1117.5 618.12 651.31 779 842.3 597 1100 663 643 801 811 1 1 1 1 1 1 26757 10207 588;863 10108 15948 20844 20844 1 KFLDAGHK Unmodified 914.4974 0.49740102 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 9 0 1 37.761 37.761 4 0.028595 7331 TMT1-8 44.318 11.197 231.21 371.68 319.54 218.32 338.85 318.66 219 369 326 223 344 308 1 1 1 1 1 1 11571 10208 955 10109 15949 20845 20845 1 KFLDGIYVSEK Unmodified 1297.6918 0.69180331 996 Q5IFJ7;P32969 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 1 8 0 1 57.625 57.625 3 0.001204 16588 TMT1-7 89.359 44.102 145.99 217.19 166.92 170.1 132.2 187.04 138 216 174 167 140 179 1 1 1 1 1 1 29952 10209 996 10110 15950 20846 20846 1 KFLDGNELTLADCNLLPK Unmodified 2060.0612 0.061226633 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 7.5 0.5 1 1 70.132 70.132 4 3.9951E-14 21529 TMT1-6 117.67 92.873 550.33 724.19 668.09 408.55 568.28 754.5 520 726 677 420 586 723 4 4 4 4 4 4 172250 10210 59 10111 15951;15952 20847;20848;20849;20850 20848 4 KFLDGNEMTLADCNLLPK Unmodified 2078.0176 0.017647259 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 1 7 0 1 68.146 68.146 4 0.00098497 20669 TMT1-6 58.577 35.675 77.072 123.9 106.25 86.885 99.613 89.899 73 123 109 87 102 87 1 1 1 1 1 1 14666 10211 3048 10112 15953 20851 20851 1 KFLEHLSGAGK Unmodified 1185.6506 0.6506072 1559 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 0 0 0 0 1 9 0 1 44.463 44.463 4 0.0096455 9684 TMT1-8 54.7 20.739 129.71 211.32 202.09 143.4 161.63 188.33 123 210 205 145 167 181 1 1 1 1 1 1 23374 10212 1559 10113 15954 20852 20852 1 KFLPLFDR Unmodified 1034.5913 0.59130141 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 59.896 59.896 3 0.012752 15660 TMT1-8 79.986 44.63 366.26 801.84 520.7 524.51 332.51 794.28 348 785 549 514 367 754 1 1 1 1 1 1 81170 10213 1395 10114 15955 20853 20853 1 KFNALFAQGNYSEAAK Unmodified 1757.8737 0.87368386 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 9 0 1 56.149 56.149 3 3.2885E-19 14175 TMT1-8 138.91 102.14 246.31 285.43 198.92 150.15 219.81 251.7 232 287 207 152 225 242 2 2 2 2 2 2 42610 10214 1540 10115 15956 20854;20855 20854 2 KFNILGTNTK Unmodified 1134.6397 0.63970816 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 1 9 0 1 50.344 50.344 3 0.00014538 11894 TMT1-8 128.08 85.363 200.34 277.18 178.27 192.79 168.23 204.14 189 276 189 189 176 196 1 1 1 1 1 1 17689 10215 1073 10116 15957 20856 20856 1 KFPNIDVR Unmodified 987.55016 0.55016488 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 1 8 0 1 45.95 45.95 3 0.012163 11981 TMT1-7 77.732 38.584 339.35 399.23 335.78 387.47 301.53 417.8 320 402 350 378 319 400 1 1 1 1 1 1 30960 10216 1314 10117 15958 20857 20857 1 KFPTTATK Unmodified 892.50182 0.5018177 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 1 9 0 1 38.467 38.467 3 0.0076697 7591 TMT1-8 88.496 44.792 96.606 108.08 82.698 100.21 104.86 132.39 91 109 87 98 109 127 1 1 1 1 1 1 6084.6 10217 118 10118 15959 20858 20858 1 KFQGVACLDK Unmodified 1164.5961 0.59612879 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 1 8 0 1 47.577 47.577 3 0.00011071 12620 TMT1-7 121.68 66.896 349.89 661.68 505.98 462.65 472.25 736.99 332 652 525 459 496 704 1 1 1 1 1 1 56931 10218 1079 10119 15960 20859 20859 1 KFQILNDEIITILDK Unmodified 1802.019 0.018951113 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 1 8 0 1 82.127 82.127 3 0.00012374 26149 TMT1-7 83.418 74.047 122.8 174.63 133.03 116.48 126.49 150.96 116 174 138 116 131 145 2 2 2 2 2 2 15520 10219 2079 10120 15961 20860;20861 20861 2 KFVADGIFK Unmodified 1023.5753 0.57531699 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 1 9 0 1 55.216 55.216 3 0.0022118 13846 TMT1-8 106.62 68.315 301.94 833.39 483.88 465.69 671.18 605.52 288 810 514 464 682 586 1 1 1 1 1 1 47346 10220 861 10121 15962 20862 20862 1 KFVETPGQK Unmodified 1032.5604 0.56039521 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 1 8 0 1 39.743 39.743 3 0.026249 9499 TMT1-7 60.691 33.576 153.75 179.59 156.85 105.9 206.58 239.29 145 181 160 109 210 230 1 1 1 1 1 1 28191 10221 498 10122 15963 20863 20863 1 KFVGGSGQVSER Unmodified 1249.6415 0.64149908 908 P27338;P27338-2;P21397-2;P21397 MAOB;MAOA Amine oxidase [flavin-containing] B;Amine oxidase [flavin-containing] A yes no 0 0 0 0 1 8 0 1 34.011 34.011 3 0.00012331 7276 TMT1-7 100.31 69.172 231.84 313 262.96 231.42 170.56 297.88 219 313 271 229 183 284 1 1 1 1 1 1 28638 10222 908 10123 15964 20864 20864 1 KFVNEVR Unmodified 890.4974 0.49740102 2341 Q93050-1;Q93050;Q93050-3;Q9HBG4 ATP6V0A1;ATP6V0A4 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase 116 kDa subunit a isoform 4 yes no 0 0 0 0 1 8 0 1 35.512 35.512 3 0.03325 7865 TMT1-7 66.799 31.306 123.21 105.64 121.25 109.38 134.4 143.27 116 109 123 109 138 138 1 1 1 1 1 1 7190.3 10223 2341 10124 15965 20865 20865 1 KFVVDGVEVSITTSK Unmodified 1607.877 0.8770379 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 8 0 1 61.485 61.485 3 6.4792E-11 18132 TMT1-7 104.21 68.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10224 325 10125 15966 20866 20866 1 KFYDANYDGK Unmodified 1219.551 0.55095274 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 1 7 0 1 44.876 44.876 3 0.0035504 11505 TMT1-6 82.362 44.936 161.24 176.89 161.35 177.72 151.38 257.92 152 179 167 174 161 246 1 1 1 1 1 1 12427 10225 1862 10126 15967 20867 20867 1 KFYGPEGPYGVFAGR Unmodified 1643.8096 0.80962704 58 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 0 0 0 0 1 9 0 1 56.893 56.893 3 8.8698E-07 14482 TMT1-8 98.507 72.495 216.97 252.92 289.26 185.3 331.03 225.07 205 256 290 191 332 220 1 1 1 1 1 1 35647 10226 58 10127 15968 20868 20868 1 KGAAPTPPGK Unmodified 922.52362 0.52361577 1703 Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428;Q13428-3;Q13428-4;Q13428-5 TCOF1 Treacle protein yes no 0 0 0 0 1 8 0 1 33.399 33.399 3 0.02988 7056 TMT1-7 56.359 38.992 53.764 79.934 93.385 73.086 60.445 121.93 51 80 94 73 65 116 1 1 1 1 1 1 5797.4 10227 1703 10128 15969 20869 20869 1 KGACASHVSTMASFLK Unmodified 1693.828 0.827996 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 1 9 0 1 46.686 46.686 4 0.01176 10496 TMT1-8 43.794 18.475 122.58 190.22 156.36 106.21 191.83 241.84 116 189 160 109 196 232 1 1 1 1 1 1 10365 10228 2887 10129 15970 20870 20870 1 KGADIMYTGTVDCWR Unmodified 1771.8022 0.80217518 665 P12236;P12235 SLC25A6;SLC25A4 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 yes no 0 0 0 0 1 7 0 1 54.034 54.034 3 0.0018041 15115 TMT1-6 66.913 53.257 77.203 85.41 116.8 71.685 60.766 114.46 73 87 116 73 65 109 1 1 1 1 1 1 12535 10229 665 10130 15971 20871 20871 1 KGAGDGSDEEVDGK Unmodified 1362.5899 0.58991702 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3 0 1 34.032 34.032 3 0.0016082 8942 TMT1-2 71.781 66.316 85.17 47.31 72.441 73.571 101.03 66.407 80 51 73 73 102 65 1 1 1 1 1 1 6331.5 10230 1019 10131 15972 20872 20872 1 KGANTHYFR Unmodified 1092.5465 0.54647648 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 1 8 0 1 28.48 28.48 4 0.01962 5248 TMT1-7 55.461 40.585 138.82 180.9 138.8 146.71 186.08 141.8 131 181 145 145 189 138 1 1 1 1 1 1 7585 10231 1081 10132 15973 20873 20873 1 KGCPPDDIENPR Unmodified 1396.6405 0.6405128 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 1 4 0 1 33.99 33.99 3 1.0263E-08 7934 TMT1-3 136.3 105.3 396.15 680.44 469.75 419.61 550.56 585.51 375 672 491 419 564 564 2 2 2 2 2 2 50355 10232 500 10133 15974 20874;20875 20874 2 KGDECELLGHSK Unmodified 1371.6453 0.64526383 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 1 5 0 1 37.899 37.899 4 1.8464E-05 9202 TMT1-4 104.18 83.801 517 734.72 490.93 488.74 178.46 759.23 488 731 517 477 217 717 1 1 1 1 1 1 56006 10233 1180 10134 15975 20876 20876 1 KGDEYFILEESNLPWWR Unmodified 2181.0531 0.053104788 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 1 7 0 1 76.137 76.137 3 6.0637E-06 23823 TMT1-6 89.489 83.646 46.219 104.1 78.623 32.737 102.36 82.359 44 102 80 36 102 80 1 1 1 1 1 1 18641 10234 1601 10135 15976 20877 20877 1 KGDILTLLNSTNKDWWK Unmodified 2031.0789 0.078925608 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 2 9 0 1 72.749 72.749 4 1.6737E-06 20763 TMT1-8 74.12 49.82 77.089 140.13 89.665 72.875 83.489 121.27 73 138 94 73 87 116 1 1 1 1 1 1 6881.8 10235 1737 10136 15977 20878 20878 1 KGDIVDIK Unmodified 886.51238 0.51238239 1133 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 0 1 6 0 1 45.302 45.302 3 0.016443 12245 TMT1-5 73.887 18.425 436.18 554.34 341.02 341.34 587.36 471.47 411 554 362 341 592 458 1 1 1 1 1 1 53742 10236 1133 10137 15978 20879 20879 1 KGDSSAEELK Unmodified 1062.5193 0.51931826 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 1 4.5 0.5 1 1 35.093 35.093 3 0.003476 8093 TMT1-4 82.705 25.922 857.6 1315.9 821.94 811.03 1171.2 1146.6 810 1304 870 807 1193 1107 2 2 2 2 2 2 63238 10237 897 10138 15979;15980 20880;20881 20881 2 KGDTAALGGK Unmodified 916.49779 0.49779495 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 1 7 0 1 35.904 35.904 3 0.021156 7983 TMT1-6 61.344 18.261 53.954 88.018 54.571 59.095 55.628 67.703 51 87 58 58 58 65 1 1 1 1 1 1 4236.8 10238 2528 10139 15981 20882 20882 1 KGDTWYLVDSR Unmodified 1338.6568 0.65681479 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;Q9Y4E8-4 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 1 7 0 1 50.181 50.181 3 0.00020568 13594 TMT1-6 69.795 65.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10239 3012 10140 15982 20883 20883 1 KGDVVIVLTGWRPGSGFTNTMR Unmodified 2390.2529 0.252884 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 2 9 0 1 64.57 64.57 4 3.2283E-25 17495 TMT1-8 124 102.6 361.86 440.8 304.08 311.71 303.88 511.54 341 442 320 307 321 488 2 2 2 2 2 2 73268 10240 706;707 10141 15983 20884;20885 20884 2 KGEDFVK Unmodified 821.42832 0.42831841 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 1 6 0 1 38.679 38.679 3 0.032366 9620 TMT1-5 67.494 29.407 2105.2 2699.2 2400 1733.2 2292.3 3180.6 1988 2708 2449 1756 2372 3045 1 1 1 1 1 1 174170 10241 1075 10142 15984 20886 20886 1 KGEFETGFEK Unmodified 1170.5557 0.55570376 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 1 6 0 1 46.234 46.234 3 0.021944 12617 TMT1-5 60.893 32.927 307.93 445.86 346.33 285.53 225.34 427.43 291 444 358 284 242 407 1 1 1 1 1 1 34740 10242 718 10143 15985 20887 20887 1 KGEIFELK Unmodified 962.54368 0.54368251 1637;1467 P63010-2;P63010;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 1 7 0 1 51.872 51.872 3 0.025441 14219 TMT1-6 66.19 45.32 773.74 919.28 826.03 607.02 615.08 953.57 730 926 843 611 646 911 1 1 1 1 1 1 104720 10243 1467;1637 10144 15986 20888 20888 1 KGEITGEVR Unmodified 987.53491 0.53490874 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4 2.16 1 1 1 33.511 33.511 3 0.0011852 7507 TMT1-4 100.88 62.072 14811 19497 18412 12270 19122 20353 13997 19552 18672 12559 19488 19605 4 4 4 4 4 4 1484300 10244 831 10145 15987;15988;15989 20889;20890;20891;20892 20891 4 KGESQTDIEITR Unmodified 1375.6943 0.69432251 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 1 4 0 1 36.465 36.465 3 0.0034513 8895 TMT1-3 73.262 61.117 146.09 192.67 169.55 144.18 223.09 164.19 138 193 174 145 225 160 1 1 1 1 1 1 21420 10245 1178 10146 15990 20893 20893 1 KGETLSQEEQR Unmodified 1303.6368 0.63680763 2952 Q9Y259 CHKB Choline/ethanolamine kinase yes yes 0 0 0 0 1 4 0 1 29.513 29.513 3 0.0074229 6170 TMT1-3 69.578 40.237 54.02 64.454 63.601 58.129 78.414 75.58 51 65 65 58 80 73 1 1 1 1 1 1 5386.7 10246 2952 10147 15991 20894 20894 1 KGEVFLYEIGGNIGER Unmodified 1779.9155 0.91554867 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 1 6 0 1 61.826 61.826 3 5.3351E-05 18801 TMT1-5 80.859 60.752 145.82 221.04 192.02 135.9 185.78 165.26 138 220 196 138 189 160 1 1 1 1 1 1 32688 10247 2172 10148 15992 20895 20895 1 KGFDFTLMVAGESGLGK Unmodified 1755.8866 0.88655673 2486;2288 Q99719;Q99719-2;O43236-6;Q8WYJ6;Q8WYJ6-2 SEPT5;SEPT1 Septin-5;Septin-1 no no 0 0 0 0 1 9 0 1 70.871 70.871 3 0.012767 20043 TMT1-8 52.185 9.2719 30.699 51.752 26.465 37.119 34.667 37.387 29 51 29 36 36 36 1 1 1 1 1 1 7495.9 10248 2486;2288 10149 15993 20896 20896 1 KGFEFTLMVVGESGLGK Unmodified 1797.9335 0.93350692 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 1 9 0 2 74.537 74.537 3;4 0.001387 21432 TMT1-8 59.372 38.419 77.176 100.44 108.72 63.016 82.367 167.14 73 101 109 65 87 159 2 2 2 2 2 2 10235 10249 1812 10150 15994;15995 20897;20898 20897 2 KGFIGPGIDVPAPDMSTGER Unmodified 2043.0095 0.0095254139 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 1 7 0 2 59.612 59.612 3;4 0.00060134 17352 TMT1-6 58.755 51.347 108.15 122.75 113.06 101.93 149.9 158.82 102 124 116 102 153 153 2 2 2 2 2 2 18557 10250 387 10151 15996;15997 20899;20900 20900 2 KGFSEGLWEIENNPTVK Unmodified 1946.9738 0.97379183 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 1 7 0 1 62.07 62.07 3 1.1107E-05 18263 TMT1-6 87.419 62.365 54.039 49.397 73.167 57.981 55.936 60.232 51 51 73 58 58 58 1 1 1 1 1 1 23047 10251 1257 10152 15998 20901 20901 1 KGGPGSTLSFVGK Unmodified 1233.6717 0.67173657 2508 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 0 1 9 0 1 48.382 48.382 3 0.01973 11167 TMT1-8 57.414 22.526 46.574 50.04 64.829 50.816 56.522 52.753 44 51 65 51 58 51 1 1 1 1 1 1 6944.5 10252 2508 10153 15999 20902 20902 1 KGGSWIQEINVAEK Unmodified 1557.8151 0.81510635 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 7 0 1 56.244 56.244 3 0.00079504 16002 TMT1-6 76.391 52.104 100.15 77.46 54.283 74.547 106.7 113.15 94 80 58 73 109 109 1 1 1 1 1 1 7904.1 10253 1507 10154 16000 20903 20903 1 KGGVASGFK Unmodified 849.47085 0.47085192 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 9 0 2 37.924 37.924 3;4 0.0052848 7446 TMT1-8 96.113 64.62 1796.1 2765 2002.6 1589.5 2181.5 2364 1698 2744 2078 1601 2233 2276 3 3 3 3 3 3 283890 + 10254 506 10155 16001;16002 20904;20905;20906 20905 3 KGHAVGDIPGVR Unmodified 1204.6677 0.66765425 1424 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 1 7 0 1 34.235 34.235 3 0.0030573 7295 TMT1-6 53.051 38.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10255 1424 10156 16003 20907 20907 1 KGHEYTNIK Unmodified 1088.5615 0.56145784 1600 Q06124;Q06124-2 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 1 7 0 1 32.028 32.028 4 0.005014 6422 TMT1-6 74.267 65.078 130.21 166.31 155.65 153.37 185.27 156.75 123 167 160 152 189 152 1 1 1 1 1 1 5140.3 10256 1600 10157 16004 20908 20908 1 KGHFDTLSK Unmodified 1031.54 0.53999412 1512 P80511 S100A12 Protein S100-A12;Calcitermin yes yes 0 0 0 0 1 8 0 1 36.072 36.072 4 0.015585 8119 TMT1-7 59.426 47.158 720.12 1389.8 963.55 535.64 778.26 896.68 683 1367 993 556 797 862 1 1 1 1 1 1 32634 10257 1512 10158 16005 20909 20909 1 KGISLNPEQWSQLK Unmodified 1626.873 0.87295558 1294 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 1 9 0 2 61.173 61.173 3;4 2.7883E-11 16176 TMT1-8 122.56 88.719 222.5 267.04 249.74 178.42 240.57 248.98 210 269 254 181 246 240 2 2 2 2 2 2 29163 10258 1294 10159 16006;16007 20910;20911 20911 2 KGIVDQSQQAYQEAFEISK Unmodified 2168.075 0.074962442 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 1 6.33 0.471 2 1 60.796 60.796 3;4 3.9383E-39 17822 TMT1-6 171.98 148.18 874.19 1238.8 1165.9 914.64 1255.8 1379.8 827 1238 1188 922 1286 1328 3 3 3 3 3 3 202580 10259 1471 10160 16008;16009;16010 20912;20913;20914 20914 3 KGIVLLEELLPK Unmodified 1350.8486 0.84863831 2996 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 1 8 0 1 77.847 77.847 3 0.0018464 24513 TMT1-7 77.527 43.842 30.519 58.808 50.599 20.216 43.271 53.131 29 58 51 22 44 51 1 1 1 1 1 1 7959.3 10260 2996 10161 16011 20915 20915 1 KGIVNEQFLLQR Unmodified 1443.8198 0.8197978 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 1 8 0 1 52.977 52.977 3 0.014274 14800 TMT1-7 60.55 48.167 123.15 129.2 112.23 110.21 118.92 136.25 116 131 116 109 123 131 1 1 1 1 1 1 5640.6 10261 1194 10162 16012 20916 20916 1 KGIWLEAGK Unmodified 1000.5706 0.57056597 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6 3.56 1 1 1 50.748 50.748 3 0.0011935 11838 TMT1-8 117.52 68.726 4863.1 6986.9 6121 5023.5 5879.1 7792.1 4599 6971 6274 5031 6097 7467 4 4 4 4 4 4 700260 10262 3010 10163 16013;16014;16015 20917;20918;20919;20920 20919 4 KGKPAAPGGAGNTGTK Unmodified 1410.7579 0.75792582 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 2 9 0 1 31.002 31.002 4 0.00094634 5184 TMT1-8 63.631 33.193 30.783 23.925 35.87 33.48 23.977 18.504 29 25 36 33 25 18 1 1 1 1 1 1 1282.2 10263 1744 10164 16016 20921 20921 1 KGLAYCETHYNQLFGDVCFHCNR Unmodified 2888.2581 0.25812209 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 1 8 0 1 53.107 53.107 5 1.0968E-18 14930 TMT1-7 115.66 108.93 609.28 793.54 800.87 533.94 629.01 767.69 576 797 809 543 650 737 2 2 2 2 2 2 168560 10264 1149 10165 16017 20922;20923 20923 2 KGLDPYNVLAPK Unmodified 1313.7343 0.73433683 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 1 8.5 0.5 2 2 55.636 55.636 3;4 0.00048273 14024 TMT1-8 76.533 45.706 980.16 1170.2 1086.1 940.67 996.22 1257.2 925 1179 1112 937 1035 1206 3 3 3 3 3 3 132390 10265 633 10166 16018;16019;16020;16021 20924;20925;20926;20927 20926 4 KGLIAAICAGPTALLAHEIGFGSK Unmodified 2394.3093 0.30933625 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 9 0 2 75.861 75.861 4;5 6.7123E-26 21898 TMT1-8 115.11 99.519 400.29 651.66 520.11 468.86 504.01 565.52 379 646 538 466 521 544 5 5 5 5 5 5 59491 10266 2468 10167 16022;16023 20928;20929;20930;20931;20932 20928 5 KGLTLIELWEGLTVDDVQK Unmodified 2156.1729 0.17288557 1326 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 1 8 0 2 86.717 86.717 3;4 8.4373E-05 27916 TMT1-7 65.951 52.079 70.035 79.321 64.383 43.037 64.743 67.443 66 80 66 44 66 65 2 2 2 2 2 2 9639.8 10267 1326 10168 16024;16025 20933;20934 20934 2 KGLTPSQIGVILR Unmodified 1380.8453 0.84528426 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 1 9 0 1 55.307 55.307 3 0.00053396 13832 TMT1-8 90.229 59.405 263.62 284.64 176.39 242.08 226.85 319.72 248 287 190 235 238 306 1 1 1 1 1 1 33351 10268 1427 10169 16026 20935 20935 1 KGNFNYIEFTR Unmodified 1387.6884 0.68844927 115 P19105;O14950 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 0 0 0 0 1 8 0 1 51.219 51.219 3 3.5403E-05 14049 TMT1-7 112.64 88.763 413.76 567.18 490.82 315.65 490.73 487.02 391 567 500 324 499 470 2 2 2 2 2 2 38525 10269 115 10170 16027 20936;20937 20936 2 KGNFNYVEFTR Unmodified 1373.6728 0.67279921 879 P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 1 8 0 1 48.547 48.547 3 0.002903 13027 TMT1-7 78.964 57.663 225.22 309.69 296.78 181.89 256.08 310.36 213 310 300 187 263 298 1 1 1 1 1 1 22525 10270 879 10171 16028 20938 20938 1 KGNNESYHYAR Unmodified 1337.6113 0.61126158 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 1 5 0 1 25.879 25.879 4 0.015227 4468 TMT1-4 54.471 37.839 26.483 44.702 19.642 30.218 16.394 30.446 25 44 22 29 18 29 1 1 1 1 1 1 1156 10271 1583 10172 16029 20939 20939 1 KGNYAER Unmodified 836.41407 0.41406533 612;2343;2134 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2;Q8IUE6;Q93077 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;HIST2H2AB;HIST1H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 2-B;Histone H2A type 1-C no no 0 0 0 0 1 6 0.816 1 1 1 24.561 24.561 3 0.0034806 4205 TMT1-4 105.25 74.829 1585.7 1814.2 1554.2 2080 2339.7 1822.2 1495 1830 1630 2028 2388 1772 4 4 4 4 4 4 552200 10272 612;2134;2343 10173 16030;16031;16032 20940;20941;20942;20943 20940 4 KGPEDTAQLAHAVLAK Unmodified 1647.8944 0.8944193 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 1 7.5 0.5 1 1 51.722 51.722 3;4 5.836E-15 14338 TMT1-7 111.92 87.638 1154.3 1484.5 1312.3 1079.5 1326.4 1539.8 1090 1489 1345 1082 1366 1480 2 2 2 2 2 2 63779 10273 1878 10174 16033;16034 20944;20945;20946 20946 3 KGPGPGGPGGAGVAR Unmodified 1233.6578 0.65781785 2310 Q92686 NRGN Neurogranin;NEUG(55-78) yes yes 0 0 0 0 1 7.67 0.471 1 2 29.654 29.654 3;4 2.2001E-06 5615 TMT1-7 103.11 79.122 478.06 572.09 319.8 473.19 327.3 831.73 450 573 349 456 361 789 4 4 4 4 4 4 56020 10274 2310 10175 16035;16036;16037 20947;20948;20949;20950 20948 4 KGPGRPTGSK Unmodified 983.55123 0.55122751 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 2 9 0 1 25.189 25.189 4 0.015307 4169 TMT1-8 69.01 38.825 294.1 315.28 257.37 249.79 373.73 174.82 277 319 267 249 374 174 2 2 2 2 2 2 8543.6 10275 900 10176 16038 20951;20952 20952 2 KGPPVAPK Unmodified 792.48577 0.48577371 1743 Q14005-3;Q14005-2;Q14005;Q14005-4 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 1 9 0 1 34.773 34.773 3 0.04384 6412 TMT1-8 60.973 28.752 46.309 88.157 77.083 88.773 91.663 75.202 44 87 80 87 94 73 1 1 1 1 1 1 7572.7 10276 1743 10177 16039 20953 20953 1 KGQAVDYEGSR Unmodified 1208.5786 0.57856447 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 5 0 1 30.613 30.613 3 0.00057496 6309 TMT1-4 96.059 74.015 184.66 217.92 158.37 186.66 208.26 204.06 174 219 167 183 214 197 1 1 1 1 1 1 21020 10277 686 10178 16040 20954 20954 1 KGQTHTLEDFQR Unmodified 1458.7215 0.72154031 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 1 6 0 1 33.576 33.576 4 0.00036879 7595 TMT1-5 86.772 67.529 146.34 200.89 122.02 155.66 170.25 225.4 138 200 131 152 177 216 1 1 1 1 1 1 31452 10278 2485 10179 16041 20955 20955 1 KGSELWLGVDALGLNIYEQNDR Unmodified 2489.2551 0.25505207 894 P26038 MSN Moesin yes yes 0 0 0 0 1 7 0 2 76.983 76.983 3 1.3818E-09 24085 TMT1-6 75.797 65.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10279 894 10180 16042;16043 20956;20957 20956 2 KGSEQESVK Unmodified 990.49819 0.49818889 760 P17612 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes yes 0 0 0 0 1 5 0 1 29.287 29.287 3 0.032153 5817 TMT1-4 57.532 27.788 123.8 68.404 55.094 65.85 101.64 58.928 116 73 58 65 102 58 1 1 1 1 1 1 4887.7 10280 760 10181 16044 20958 20958 1 KGSIDVEK Unmodified 874.476 0.47599688 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 1 6 0 1 38.217 38.217 3 0.020337 9441 TMT1-5 70.389 32.032 275.98 420.67 327.41 310.77 279.84 451.46 261 418 340 307 296 431 1 1 1 1 1 1 32955 10281 1601 10182 16045 20959 20959 1 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR Unmodified 3841.9738 0.97379842 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 1 7.5 0.5 1 1 72.744 72.744 4;5 0.0011898 22582 TMT1-7 40.347 40.347 53.899 88.942 63.152 59.54 62.885 99.476 51 88 66 59 66 95 2 2 2 2 2 2 48911 10282 508 10183 16046;16047 20960;20961 20961 2 KGSLLIDSSTIDPAVSK Unmodified 1729.9462 0.9461801 980 P31937 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes yes 0 0 0 0 1 7 0 1 58.438 58.438 3 0.0014354 16859 TMT1-6 45.844 35.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10283 980 10184 16048 20962 20962 1 KGSVFNTWK Unmodified 1065.5607 0.56072956 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 9 0 1 48.908 48.908 3 0.0046069 11319 TMT1-8 97.472 55.123 741.28 944.48 850.04 815.11 981.97 743.76 700 948 875 809 999 724 1 1 1 1 1 1 149380 10284 567 10185 16049 20963 20963 1 KGSVFNTWKPMWVVLLEDGIEFYK Unmodified 2885.4826 0.48260917 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 2 9 0 1 94.145 94.145 4 0.00081747 28878 TMT1-8 48.115 36.149 31.957 20.896 21.393 22.372 21.2 22.847 30 22 22 22 22 22 1 1 1 1 1 1 2418.2 10285 567 10186 16050 20964 20964 1 KGSVPLGLATVLQDLLR Unmodified 1779.0618 0.061818981 2269 Q8WUX9-2;Q8WUX9 CHMP7 Charged multivesicular body protein 7 yes no 0 0 0 0 1 9 0 1 85.751 85.751 3 0.0014352 25804 TMT1-8 55.267 28.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10286 2269 10187 16051 20965 20965 1 KGSVVTNER Unmodified 988.53016 0.53015772 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 6 0 1 27.224 27.224 3 0.0046021 5278 TMT1-5 82.494 49.744 161.14 226.24 137.37 115.14 184.2 238.86 152 225 145 116 189 229 1 1 1 1 1 1 75613 10287 1684 10188 16052 20966 20966 1 KGTCPSTLGEER Unmodified 1333.6296 0.62961376 2177 Q8N490-4;Q8N490-3;Q8N490 PNKD Probable hydrolase PNKD yes no 0 0 0 0 1 5 0 1 31.445 31.445 3 1.9837E-07 6633 TMT1-4 119.79 87.461 84.96 93.134 69.012 88.855 112.86 127.9 80 94 73 87 116 123 1 1 1 1 1 1 9617.9 10288 2177 10189 16053 20967 20967 1 KGTDELYAVK Unmodified 1122.5921 0.59208927 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 1 6 0 1 44.67 44.67 3 0.014443 12097 TMT1-5 65.179 31.77 523.6 894.81 689.14 559.29 739.24 813.58 496 885 712 562 758 783 2 2 2 2 2 2 62779 10289 501 10190 16054 20968;20969 20969 2 KGTDIMYTGTLDCWR Unmodified 1815.8284 0.82838993 488 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 0 1 7 0 1 57.789 57.789 3 2.9389E-10 16597 TMT1-6 117.01 91.687 138.89 173.52 134.45 84.354 144.83 299.68 131 174 138 87 152 285 1 1 1 1 1 1 27232 10290 488 10191 16055 20970 20970 1 KGTDVNVFNTILTTR Unmodified 1677.905 0.90498399 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 9 0 1 61.283 61.283 3 7.3023E-05 16227 TMT1-8 80.049 50.505 359.54 628.45 354.47 385.5 463.46 517.64 340 619 380 380 477 498 1 1 1 1 1 1 63627 10291 461 10192 16056 20971 20971 1 KGTLTEGGTQK Unmodified 1118.5932 0.5931519 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 1 7 0 2 34.17 34.17 3;4 6.2032E-07 7243 TMT1-6 135.21 88.617 261.54 308.89 325.58 260.93 320.75 331.97 247 312 330 262 329 320 2 2 2 2 2 2 19683 10292 666 10193 16057;16058 20972;20973 20972 2 KGTVEGFEPADNK Unmodified 1390.6729 0.67285879 1049 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 1 5 0 1 42.944 42.944 3 3.768E-06 11239 TMT1-4 113.48 83.789 283.87 374.8 302.8 292.54 397.42 402.27 268 375 314 291 406 388 2 2 2 2 2 2 34590 10293 1049 10194 16059 20974;20975 20974 2 KGTVVAEK Unmodified 830.48617 0.48616764 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 7 0 1 34.307 34.307 3 0.0046231 7285 TMT1-6 93.556 55.469 3165.7 3113.4 3073.5 2842.3 4005 2355.6 2982 3175 3145 2837 4031 2317 3 3 3 3 3 3 330130 10294 971 10195 16060 20976;20977;20978 20976 3 KGVITVK Unmodified 743.49052 0.49052473 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 39.854 39.854 3 0.010229 8092 TMT1-8 101.43 40.632 1522.7 2295.6 1460.4 1380.7 1751.4 2222.7 1438 2277 1541 1373 1808 2132 1 1 1 1 1 1 68883 10295 638 10196 16061 20979 20979 1 KGVLFGVPGAFTPGCSK Unmodified 1720.8971 0.89706184 947 P30044-2;P30044;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 1 9 0 1 62.058 62.058 3 1.2297E-06 16514 TMT1-8 78 57.893 68.978 86.993 55.252 43.469 70.696 106.71 65 87 58 44 73 102 1 1 1 1 1 1 16419 10296 947 10197 16062 20980 20980 1 KGVNLPGAAVDLPAVSEK Unmodified 1763.9781 0.97814893 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 7.5 0.5 1 1 58.492 58.492 3;4 6.3284E-19 16832 TMT1-6 130.56 113.87 715.42 736.39 863.58 697.16 817.35 943.54 675 751 871 699 843 907 3 3 3 3 3 3 206640 10297 706;707 10198 16063;16064 20981;20982;20983 20981 3 KGYTQQLAFR Unmodified 1210.6459 0.64585618 409;33 P01024;CON__Q2UVX4 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 no no 0 0 0 0 1 9 0 1 41.782 41.782 3 0.04174 8691 TMT1-8 45.911 20.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10298 409;33 10199 16065 20984 20984 1 KHEAFESDLAAHQDR Unmodified 1752.818 0.81795989 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 1 5.25 0.829 1 1 2 31.968 31.968 4;5 7.0788E-06 7164 TMT1-3 92.427 74.324 1340.6 1816.7 1819.6 1368 1752.2 1821.9 1268 1821 1845 1381 1795 1756 8 8 8 8 8 8 208850 10299 672;195;1022 10200 16066;16067;16068;16069 20985;20986;20987;20988;20989;20990;20991;20992 20986 8 KHEAFETDFTVHK Unmodified 1587.7682 0.76815616 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 6 0 1 41.412 41.412 5 0.018154 10782 TMT1-5 46.964 34.604 130.11 181.13 160.53 121.14 198.44 242.72 123 181 164 123 203 233 1 1 1 1 1 1 9075.9 10300 1737 10201 16070 20993 20993 1 KHEAIETDIAAYEER Unmodified 1773.8533 0.85334235 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 3 0 1 43.973 43.973 4 0.0035997 12974 TMT1-2 59.261 50.097 161.99 194.25 201.48 127.82 178.31 180.4 153 196 203 131 182 174 2 2 2 2 2 2 20423 10301 1546 10202 16071 20994;20995 20995 2 KHEWEAHNK Unmodified 1177.5629 0.56285483 1546 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 1 6 0 1 28.798 28.798 5 0.026262 5705 TMT1-5 46.891 25.938 46.789 43.084 34.543 35.642 87.583 51.867 44 44 36 36 87 51 1 1 1 1 1 1 1969.8 10302 1546 10203 16072 20996 20996 1 KHFGAGGNQR Unmodified 1070.537 0.53697443 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 1 9 0 1 24.779 24.779 4 0.011951 4117 TMT1-8 53.597 34.817 6.3687 6.922 5.776 6.0289 9.8266 10.38 6 7 6 6 10 10 1 1 1 1 1 1 529.04 10303 2444 10204 16073 20997 20997 1 KHFVAQK Unmodified 856.49192 0.49192172 1152 P48426 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha yes yes 0 0 0 0 1 9 0 1 31.657 31.657 4 0.014968 5426 TMT1-8 58.577 10.671 65.809 83.036 50.148 66.591 77.915 78.793 62 83 54 65 80 76 1 1 1 1 1 1 3524.5 10304 1152 10205 16074 20998 20998 1 KHGLEVIYMIEPIDEYCVQQLK Unmodified 2704.3604 0.36044512 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 7 0 1 70.493 70.493 4 9.6354E-13 21613 TMT1-6 96.79 83.602 61.228 118.14 69.001 58.097 63.003 67.492 58 116 73 58 65 65 1 1 1 1 1 1 14851 10305 545 10206 16075 20999 20999 1 KHGVYNPNK Unmodified 1055.5512 0.55122751 1075 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 1 8 0 1 28.501 28.501 4 0.0069028 5251 TMT1-7 69.825 35.939 170.21 164.4 108.16 148.83 170.82 157.16 160 167 116 145 175 152 2 2 2 2 2 2 6201.1 10306 1075 10207 16076 21000;21001 21000 2 KHIIEGLK Unmodified 936.57565 0.57565135 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5;Q14722-2;Q14722-3;Q14722 KCNAB2;KCNAB1 Voltage-gated potassium channel subunit beta-2;Voltage-gated potassium channel subunit beta-1 yes no 0 0 0 0 1 8 0 1 40.3 40.3 4 0.013318 9768 TMT1-7 66.692 29.671 152.32 471.52 330.32 336.63 464.95 356.63 146 458 346 334 471 347 1 1 1 1 1 1 15486 10307 1691 10208 16077 21002 21002 1 KHINTWVAEK Unmodified 1224.6615 0.66150624 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 1 8 0 1 39.702 39.702 4 0.0043502 9466 TMT1-7 73.067 48.275 211.71 460.99 274.92 324.74 400.81 352.07 201 451 294 319 409 341 1 1 1 1 1 1 31027 10308 1014 10209 16078 21003 21003 1 KHINTWVSK Unmodified 1111.6138 0.61382777 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 1 9 0 1 39.007 39.007 4 0.017357 7788 TMT1-8 48.64 14.261 145.76 233.82 191.34 182.64 201.37 196.79 138 232 198 181 207 190 1 1 1 1 1 1 10706 10309 1222 10210 16079 21004 21004 1 KHLEINPDHPIVETLR Unmodified 1910.0374 0.037395144 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 1 6 0 1 44.401 44.401 4 1.2222E-06 11910 TMT1-5 94.281 80.654 301.56 482.1 304.89 342 376.33 341.04 285 477 324 336 386 330 1 1 1 1 1 1 34923 10310 561 10211 16080 21005 21005 1 KHLEINPDHSIIETLR Unmodified 1914.0323 0.032309766 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 6 0 1 47.599 47.599 5 8.042E-19 13153 TMT1-5 151.11 111.08 562.14 780.58 620.32 456.33 736.3 914.94 531 779 638 464 754 878 2 2 2 2 2 2 84051 10311 545 10212 16081 21006;21007 21006 2 KHNLLASK Unmodified 909.5396 0.53960019 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 9 0 1 34.14 34.14 4 0.0035426 6181 TMT1-8 71.223 40.653 122.35 212.24 176.71 129.86 148.38 135.41 116 210 181 131 152 131 1 1 1 1 1 1 8727.7 10312 1546 10213 16082 21008 21008 1 KHNVGVK Unmodified 780.46062 0.46062159 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 1 8 0 1 26.42 26.42 4 0.027486 4627 TMT1-7 59.205 34.87 46.636 65.322 41.469 44.542 57.36 36.739 44 65 44 44 58 36 1 1 1 1 1 1 3188.3 10313 307 10214 16083 21009 21009 1 KHPDASVNFSEFSK Unmodified 1591.7631 0.76307078 588 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 0 1 7.5 0.5 1 1 45.887 45.887 4 2.1319E-06 11911 TMT1-6 103.21 35.046 1493.1 2227.9 1619.7 1955.8 2169.6 2251.3 1411 2214 1708 1915 2234 2170 3 3 3 3 3 3 271680 10314 588 10215 16084;16085 21010;21011;21012 21010 3 KHPDSSVNFAEFSK Unmodified 1591.7631 0.76307078 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 1 7 0 1 45.754 45.754 4 2.3442E-08 11804 TMT1-6 115.8 78.254 587.89 757.24 639.73 607.72 703.6 629.12 555 759 661 603 720 609 1 1 1 1 1 1 87517 10315 900 10216 16086 21013 21013 1 KHPEVDVLINFASLR Unmodified 1736.9574 0.95735391 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 8 0 1 61.841 61.841 4 0.00011545 18297 TMT1-7 78.932 65.53 184.3 254.68 188.4 167.44 205.27 225.46 174 254 196 167 211 217 2 2 2 2 2 2 19825 10316 1283 10217 16087 21014;21015 21015 2 KHSQFIGYPITLFVEK Unmodified 1906.0353 0.035269879 545 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 1 9 0 1 64.31 64.31 4 3.1773E-08 17487 TMT1-8 101.96 75.521 404.67 357.68 393.64 327.15 361.31 493.91 381 368 399 327 376 473 2 2 2 2 2 2 13972 10317 545 10218 16088 21016;21017 21017 2 KHSQFIGYPITLYLEK Unmodified 1936.0458 0.045834566 561 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 1 9 0 1 62.672 62.672 4 1.369E-06 16768 TMT1-8 91.457 71.076 77.221 101.65 100.02 86.567 136.26 119.77 73 102 102 87 138 116 1 1 1 1 1 1 13268 10318 561 10219 16089 21018 21018 1 KHTGYVGLK Unmodified 1001.5658 0.56581494 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 1 9 0 1 34.545 34.545 4 0.0052817 6301 TMT1-8 63.816 37.432 77.424 86.024 79.136 42.025 71.825 75.768 73 87 80 44 73 73 1 1 1 1 1 1 1960.6 10319 2339 10220 16090 21019 21019 1 KHVDWVK Unmodified 910.50249 0.5024864 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 8 0 1 37.466 37.466 4 0.025643 8639 TMT1-7 60.682 33.72 219.94 383.85 400.82 346.03 438.92 432 209 381 407 346 449 417 1 1 1 1 1 1 16441 10320 1555;1556 10221 16091 21020 21020 1 KIAELCDDPK Unmodified 1187.5856 0.58562368 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 5.33 0.471 2 1 44.004 44.004 3;4 0.00065931 11660 TMT1-4 94.801 59.387 939.64 935.36 1422.7 991.69 1226.9 1050.2 888 961 1412 1006 1251 1018 3 3 3 3 3 3 99257 10321 776 10222 16092;16093;16094 21021;21022;21023 21022 3 KICLDLQALLYK Unmodified 1476.8374 0.83742169 636 P10720 PF4V1 Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) yes yes 0 0 0 0 1 9 0 1 73.554 73.554 4 0.00056476 21033 TMT1-8 73.624 45.415 137.9 227.98 254.15 141.44 159.04 266.23 131 227 254 146 167 254 2 2 2 2 2 2 14790 10322 636 10223 16095 21024;21025 21024 2 KICLDLQAPLYK Unmodified 1460.8061 0.80612157 449 P02776 PF4 Platelet factor 4;Platelet factor 4, short form yes yes 0 0 0 0 1 7.4 3.2 1 4 62.468 62.468 2;3;4 2.8234E-07 16591 TMT1-8 125.03 78.286 1971.3 2819.4 2625.5 2307.2 3074.6 3450.3 1865 2816 2687 2307 3154 3319 5 5 5 5 5 5 1357300 10323 449 10224 16096;16097;16098;16099;16100 21026;21027;21028;21029;21030 21028 5 KICLDPDAPR Unmodified 1183.6019 0.60194245 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 1 5.5 2.69 1 1 1 1 43.502 43.502 3 0.0006109 11029 TMT1-6 100.92 77.316 30303 37710 34893 34571 41620 39262 28612 37910 35904 34248 42597 37945 8 8 8 8 8 8 3858100 10324 448 10225 16101;16102;16103;16104 21031;21032;21033;21034;21035;21036;21037;21038 21036 8 KICYQEVSQCFGVLSSR Unmodified 2059.9819 0.98193045 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 1 9 0 1 59.301 59.301 3 1.2885E-13 15449 TMT1-8 100.48 73.449 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10325 1888 10226 16105 21039 21039 1 KIDAAQNWLADPNGGPEGEEQIR Unmodified 2507.2041 0.20407913 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 5.33 0.471 2 1 57.309 57.309 3;4 4.4707E-13 16848 TMT1-4 101.47 88.67 283.54 360.93 369.94 382.78 442.5 370.07 268 363 379 378 452 359 3 3 3 3 3 3 235310 10326 776 10227 16106;16107;16108 21040;21041;21042 21040 3 KIDGQQTIIACIESHQFQAK Unmodified 2314.174 0.17396498 1143 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 1 8 0 1 58.876 58.876 4 9.5058E-31 17094 TMT1-7 143.04 128.27 246.53 166.25 262.78 261.56 253.56 277.39 232 176 264 258 263 267 1 1 1 1 1 1 20979 10327 1143 10228 16109 21043 21043 1 KIEDLGAAMEEALILDNK Unmodified 1972.0187 0.018693117 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 6 0 1 79.486 79.486 3 2.5389E-05 25754 TMT1-5 59.857 43.914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10328 1737 10229 16110 21044 21044 1 KIEDNNTLVFIVDVK Unmodified 1745.9564 0.95635086 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 1 7 0 1 67.426 67.426 3 0.00011408 20395 TMT1-6 84.195 66.278 92.713 200.32 117.87 85.651 128.42 135.98 88 196 124 87 131 131 2 2 2 2 2 2 13764 10329 1441 10230 16111 21045;21046 21045 2 KIEEQLTLEK Unmodified 1229.6867 0.68671794 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 1 6 0 1 49.632 49.632 2 0.00040604 14003 TMT1-5 125.3 64.899 130.28 181.6 131.5 140.62 126.44 120.05 123 181 138 138 131 116 1 1 1 1 1 1 24892 10330 967 10231 16112 21047 21047 1 KIEFPLPDEK Unmodified 1214.6547 0.65468953 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 1 6.5 0.5 1 1 57.153 57.153 3 0.0084614 16380 TMT1-6 72.29 41.463 245.59 328.76 283.21 239.97 290.62 262.47 232 329 291 240 297 254 2 2 2 2 2 2 20613 10331 1415 10232 16113;16114 21048;21049 21049 2 KIEFSLPDLEGR Unmodified 1402.7456 0.7456298 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 1 7 0 1 63.544 63.544 3 0.001123 18817 TMT1-6 80.507 61.113 115.33 175.27 125.14 123.62 178.77 142.01 109 174 131 123 181 138 1 1 1 1 1 1 20962 10332 1033 10233 16115 21050 21050 1 KIEFVVVGPEAPLAAGIVGNLR Unmodified 2248.2943 0.29433811 842 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 1 9 0 2 76.17 76.17 3;4 0.0014833 22110 TMT1-8 50.776 34.834 69.956 110.4 51.354 99.335 76.504 106.55 66 109 58 95 81 102 2 2 2 2 2 2 11147 10333 842 10234 16116;16117 21051;21052 21051 2 KIEIGDGAELTAEFLYDEVHPK Unmodified 2473.2377 0.23767067 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 1 5.5 0.5 1 1 74.446 74.446 4 1.0276E-12 23603 TMT1-4 96.286 81.825 362.67 463.74 329 425.69 382.78 467.71 342 464 349 414 400 449 5 5 5 5 5 5 58856 10334 2013 10235 16118;16119 21053;21054;21055;21056;21057 21053 5 KIEISQHAK Unmodified 1052.5978 0.59784335 1392 P61513 RPL37A 60S ribosomal protein L37a yes yes 0 0 0 0 1 7 0 1 34.372 34.372 4 0.0040794 7356 TMT1-6 76.465 48.641 129.93 227.05 151.25 170.42 164.67 276.73 123 224 160 167 174 264 1 1 1 1 1 1 6133.2 10335 1392 10236 16120 21058 21058 1 KIENIHIGEK Unmodified 1179.6612 0.66117189 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 1 7 0 1 41.486 41.486 4 0.025108 10174 TMT1-6 51.286 26.495 268.33 436.97 338.16 291.21 356.34 442.88 254 433 350 291 368 425 2 2 2 2 2 2 13897 10336 51 10237 16121 21059;21060 21059 2 KIENLTSAVNSLNFIIK Unmodified 1903.0779 0.077862976 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 9 0 2 74.695 74.695 3;4 1.3562E-14 21591 TMT1-8 122.01 93.377 316.48 337.06 264.71 247.32 307.53 430.42 298 341 275 246 319 412 3 3 3 3 3 3 125310 10337 1684 10238 16122;16123 21061;21062;21063 21062 3 KIEPELDGSAQVTSHDASTNGLINFIK Unmodified 2883.4614 0.46141603 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 1 6 0 1 63.633 63.633 4 3.8227E-08 19540 TMT1-5 73.072 59.665 46.634 65.316 41.853 35.931 49.071 76.418 44 65 44 36 51 73 1 1 1 1 1 1 6438.9 10338 516 10239 16124 21064 21064 1 KIEPELDGSSPVTSHDSSTNGLINFIK Unmodified 2884.4454 0.44543162 35 CON__Q3ZBD7 yes yes 0 0 0 0 1 6 0 2 65.052 65.052 4;5 1.5161E-05 20078 TMT1-5 55.881 41.474 721.76 1018.6 822.44 632.58 836.69 832.12 682 1016 846 638 855 803 5 5 5 5 5 5 72909 + 10339 35 10240 16125;16126 21065;21066;21067;21068;21069 21066 5 KIESFGSK Unmodified 894.48108 0.48108226 958 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 1 8 0 2 40.844 40.844 2;3 0.0049305 9972 TMT1-7 77.662 33.215 968.93 1575.7 1186.7 1052.7 1287.3 1372.5 917 1561 1232 1050 1322 1322 1 1 1 1 1 1 236370 10340 958 10241 16127;16128 21070;21071 21071 2 KIFEYETQR Unmodified 1212.6139 0.61388734 1218 P50402 EMD Emerin yes yes 0 0 0 0 1 6 0 1 43.566 43.566 3 0.045944 11623 TMT1-5 52.344 29.811 178.77 409.1 265.88 212.59 348.91 368.47 170 400 278 215 355 355 1 1 1 1 1 1 21648 10341 1218 10242 16129 21072 21072 1 KIFNHCFTGNCVIDWLVSNQSVR Unmodified 2793.3479 0.34792338 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 9 0 1 69.999 69.999 4 9.0574E-16 19656 TMT1-8 88.168 73.04 162.69 142.24 127.54 108.91 139.63 204.95 153 146 131 109 145 196 2 2 2 2 2 2 12604 10342 567 10243 16130 21073;21074 21073 2 KIFQAHK Unmodified 870.50757 0.50757178 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 9 0 2 35.707 35.707 3;4 0.0040346 6741 TMT1-8 86.866 41.186 3042.8 3664.1 3785.9 2809.9 3357.7 4312.1 2874 3696 3832 2835 3475 4135 2 2 2 2 2 2 269380 10343 3010 10244 16131;16132 21075;21076 21076 2 KIFTFAEK Unmodified 982.54877 0.54876789 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 9 0 1 53.583 53.583 3 0.018383 13234 TMT1-8 72.848 45.023 260.65 430.54 371.59 376.15 150.59 411.44 247 427 384 367 174 390 1 1 1 1 1 1 25419 10344 1297 10245 16133 21077 21077 1 KIGDTSVSYK Unmodified 1096.5764 0.57643921 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 7.5 0.5 1 1 41.716 41.716 3 0.0010434 10175 TMT1-7 63.966 50.547 390.34 638.37 400.13 460.93 492.25 553.07 369 631 426 452 509 532 1 1 1 1 1 1 35892 10345 816 10246 16134;16135 21078;21079 21079 2 KIGGIFAFK Unmodified 979.58549 0.58548775 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 1 9 0 1 59.753 59.753 3 0.016406 15613 TMT1-8 71.425 40.855 276.69 476.78 341.17 266.06 405.17 547.02 262 471 354 269 417 524 2 2 2 2 2 2 10587 10346 844 10247 16136 21080;21081 21080 2 KIHENEK Unmodified 896.47158 0.4715802 590 P09486 SPARC SPARC yes yes 0 0 0 0 1 5 0 1 26.372 26.372 4 0.025643 4658 TMT1-4 60.682 6.1325 85.087 54.632 80.333 56.568 108.34 89.651 80 58 80 58 109 87 1 1 1 1 1 1 2999.9 10347 590 10248 16137 21082 21082 1 KIHIDLPNEQAR Unmodified 1432.7787 0.77866126 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 1 6.5 0.5 1 1 43.571 43.571 4 0.0022293 11049 TMT1-6 71.558 51.461 237.76 389.91 285.03 263.38 318.66 389.59 225 386 297 262 329 374 2 2 2 2 2 2 23598 10348 1437 10249 16138;16139 21083;21084 21084 2 KIHLFDIDVPGK Unmodified 1380.7765 0.776536 2714 Q9NQR4 NIT2 Omega-amidase NIT2 yes yes 0 0 0 0 1 8 0 1 59.438 59.438 4 0.00046505 17310 TMT1-7 84.289 67.624 184.68 188.82 180.39 265.96 164.61 272.46 174 192 189 256 178 260 1 1 1 1 1 1 12731 10349 2714 10250 16140 21085 21085 1 KIHPQTIIAGWR Unmodified 1418.8147 0.81465284 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 1 9 0 1 47.008 47.008 4 0.0018432 10661 TMT1-8 65.395 46.124 146.28 180.24 148.47 123.91 147.33 173.82 138 181 153 124 152 167 2 2 2 2 2 2 13442 10350 1504 10251 16141 21086;21087 21087 2 KIHSQEEALR Unmodified 1209.6466 0.64658446 88 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 0 0 1 5 0 1 28.362 28.362 4 0.0023073 5463 TMT1-4 79.201 46.144 77.4 93.51 76.958 80.852 106.41 113.16 73 94 80 80 109 109 1 1 1 1 1 1 5122 10351 88 10252 16142 21088 21088 1 KIIADIK Unmodified 799.51674 0.51673948 186 O43633 CHMP2A Charged multivesicular body protein 2a yes yes 0 0 0 0 1 8 0 1 46.541 46.541 3 0.010324 12218 TMT1-7 89.355 14.245 307.46 497.44 381.76 271.03 361.22 419.29 291 493 393 275 371 403 1 1 1 1 1 1 19075 10352 186 10253 16143 21089 21089 1 KILEVVNQIQDEER Unmodified 1711.9105 0.9104633 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 1 6 0 1 62.526 62.526 3 0.00027248 19085 TMT1-5 80.488 64.853 68.806 94.072 78.055 56.439 122.45 105.24 65 94 80 58 123 102 1 1 1 1 1 1 11223 10353 333 10254 16144 21090 21090 1 KILSACEK Unmodified 947.511 0.51100218 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 8 0 1 39.266 39.266 3 0.038267 9341 TMT1-7 60.167 4.4504 333.97 417.9 323.08 429.39 379.3 442.23 315 419 341 417 396 425 1 1 1 1 1 1 16034 10354 1287 10255 16145 21091 21091 1 KIMADSGPIYDK Unmodified 1336.6697 0.66968766 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 6.67 0.471 1 2 48.496 48.496 3;4 7.1266E-06 13476 TMT1-5 91.441 73.64 928.95 1262.2 1138.7 953.63 953.92 1344.7 878 1263 1166 951 998 1287 3 3 3 3 3 3 131750 + 10355 32;554 10256 16146;16147;16148 21092;21093;21094;21095 21092 4 KINELMPK Unmodified 971.54739 0.54738768 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 8 0 1 47.515 47.515 3 0.01751 12586 TMT1-7 72.928 39.666 372.92 633.47 445.55 397.2 307.96 582.84 353 626 465 393 331 555 1 1 1 1 1 1 31654 10356 1313 10257 16149 21096 21096 1 KINLELR Unmodified 884.54435 0.54435122 2534 Q9BTT0;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 1 8 0 1 45.109 45.109 3 0.019861 11644 TMT1-7 77.318 23.966 265.55 499.05 390.92 237.93 348.61 434.57 252 492 400 245 358 417 1 1 1 1 1 1 27337 10357 2534 10258 16150 21097 21097 1 KINQDGTFLVR Unmodified 1289.7092 0.70918471 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 8 0 1 45.819 45.819 3 0.0021066 11993 TMT1-7 83.573 54.225 507.77 577.91 551.79 476.53 577.13 771.31 479 584 564 476 598 739 1 1 1 1 1 1 73028 10358 1669 10259 16151 21098 21098 1 KIPDATPLLDASSLEYLFAQGQYDLVK Unmodified 2994.559 0.55900481 862 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 0 0 1 8 0 1 90.692 90.692 4 1.2223E-05 29306 TMT1-7 60.621 49.31 23.33 21.361 28.318 37.279 20.258 30.336 22 22 29 36 22 29 1 1 1 1 1 1 2097.3 10359 862 10260 16152 21099 21099 1 KIPELYKPIFR Unmodified 1402.8337 0.83365695 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 2 9 0 1 55.697 55.697 4 0.017315 13999 TMT1-8 65.179 30.458 153.36 226.01 182.69 167.83 202.77 206.35 145 225 189 167 208 199 1 1 1 1 1 1 7943.8 10360 2223 10261 16153 21100 21100 1 KIPNPDFFEDLEPFR Unmodified 1862.9203 0.9202997 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 6.33 0.471 2 1 74.173 74.173 3;4 5.5865E-17 23089 TMT1-6 143.93 126.01 1094.6 1595.6 1143.3 1134.8 1244.1 1392.9 1034 1587 1197 1122 1285 1340 7 7 7 7 7 7 198740 10361 920 10262 16154;16155;16156 21101;21102;21103;21104;21105;21106;21107 21107 7 KIPVVFR Unmodified 857.54871 0.54870831 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 1 9 0 1 47.942 47.942 3 0.031826 10991 TMT1-8 82.305 47.01 666.72 927.41 771.34 742.79 1008.5 890.11 630 926 798 739 1026 862 1 1 1 1 1 1 43894 10362 637 10263 16157 21108 21108 1 KIQALQQQADEAEDR Unmodified 1741.8595 0.85949036 1486 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 1 3.12 1.83 3 1 2 1 1 43.69 43.69 3;4 1.0743E-34 11755 TMT1-3 197.47 175.64 1364.4 1816.6 1602.9 1275.9 1526.2 1823 1289 1819 1641 1281 1575 1751 7 7 7 7 7 7 375680 10363 1486 10264 16158;16159;16160;16161;16162;16163;16164;16165 21109;21110;21111;21112;21113;21114;21115;21116;21117;21118 21114 10 KIQASTMAFK Unmodified 1123.606 0.6059652 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 1 9 0 1 46.952 46.952 3 0.0022003 10549 TMT1-8 96.64 54.64 561.28 569.55 581.85 486.87 455.17 836.61 529 580 592 485 484 797 2 2 2 2 2 2 72086 10364 1052 10265 16166 21119;21120 21119 2 KIQDEQTTYVFFDNK Unmodified 1874.905 0.90504357 2564 Q9BX67-2;Q9BX67 JAM3 Junctional adhesion molecule C yes no 0 0 0 0 1 6 0 1 57.67 57.67 3 1.1193E-05 17198 TMT1-5 97.291 69.079 46.485 88.648 47.002 58.975 85.998 66.836 44 87 51 58 87 65 1 1 1 1 1 1 12949 10365 2564 10266 16167 21121 21121 1 KIQQNTFTR Unmodified 1134.6146 0.61455605 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 1 9 0 1 34.421 34.421 3 0.00015195 6229 TMT1-8 140.17 86.676 305.31 290.17 377.89 272.9 332.14 410.53 288 298 378 276 343 394 1 1 1 1 1 1 36214 10366 270;831;1771 10267 16168 21122 21122 1 KIQSLGDSK Unmodified 974.53966 0.53965977 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 8 0 1 38.725 38.725 3 0.038249 9137 TMT1-7 54.27 31.53 177.32 188.69 154.38 146.39 153.87 197.08 167 191 160 145 160 189 1 1 1 1 1 1 11605 10367 1184 10268 16169 21123 21123 1 KIQVLQQQADDAEER Unmodified 1769.8908 0.89079049 519;520;521 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 4 1.87 1 1 1 1 44.544 44.544 3 1.451E-27 11844 TMT1-5 182.35 167.32 2112.8 3053.5 2625 1986.7 2566.3 2749.5 1998 3045 2687 2005 2631 2648 5 5 5 5 5 5 670660 10368 519;520;521 10269 16170;16171;16172;16173 21124;21125;21126;21127;21128 21128 5 KISGTTALQEALK Unmodified 1358.7769 0.77692993 965;2851 Q9UDT6-2;Q9UDT6;P30622-2;P30622-1;P30622 CLIP2;CLIP1 CAP-Gly domain-containing linker protein 2;CAP-Gly domain-containing linker protein 1 no no 0 0 0 0 1 8 0 1 52.261 52.261 3 8.558E-05 14491 TMT1-7 98.421 60.871 145.96 240.86 151.42 146.29 168.53 196.66 138 238 160 145 174 189 1 1 1 1 1 1 16967 10369 2851;965 10270 16174 21129 21129 1 KISSDLDGHPVPK Unmodified 1391.7409 0.74087877 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 6 0 1 40.056 40.056 4 0.0015183 10195 TMT1-5 71.558 47.707 320.09 791.96 534.3 431.95 736.13 678.29 305 773 557 437 745 656 1 1 1 1 1 1 35865 10370 937 10271 16175 21130 21130 1 KISSEAWPPVGTPPSSESEPVR Unmodified 2336.1648 0.16484008 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 1 6 0 1 51.805 51.805 3 0.0020846 14886 TMT1-5 50.783 43.161 15.822 29.439 20.96 22.398 21.198 22.847 15 29 22 22 22 22 1 1 1 1 1 1 14373 10371 701 10272 16176 21131 21131 1 KISSPTGSK Unmodified 903.50255 0.50254598 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 1 8.5 0.5 1 1 33.298 33.298 3 0.014859 5953 TMT1-8 72.2 37.948 328.29 375.13 231.29 337.8 310 389.84 309 377 250 327 324 374 2 2 2 2 2 2 22222 10372 2479 10273 16177;16178 21132;21133 21133 2 KISTVVSSK Unmodified 947.56515 0.56514624 1049 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 1 9 0 1 40.25 40.25 3 0.01091 8203 TMT1-8 84.821 48.877 161.9 338.81 274.42 214.59 273.65 303.46 154 333 282 216 281 292 1 1 1 1 1 1 18766 10373 1049 10274 16179 21134 21134 1 KITEVLVR Unmodified 956.60187 0.6018661 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 1 8 0 1 45.365 45.365 3 0.020366 11796 TMT1-7 70.363 25.643 259.53 315.89 296.54 223.66 69.74 319.94 245 318 302 222 87 302 1 1 1 1 1 1 26441 10374 2563 10275 16180 21135 21135 1 KITGIEPLPGENK Unmodified 1394.7769 0.77692993 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 7 0 1 50.219 50.219 3 2.5454E-05 13606 TMT1-6 103.39 87.631 114.47 227.93 224.6 103.27 131.68 230.76 109 225 225 109 138 220 1 1 1 1 1 1 23528 10375 1960 10276 16181 21136 21136 1 KITIADCGQLE Unmodified 1246.6227 0.62273747 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 1 5.5 0.5 1 1 52.38 52.38 2;3 0.0035631 14972 TMT1-5 77.593 52.207 1392.8 1986.9 1551.4 1347.6 1479.1 2063.1 1316 1980 1606 1343 1541 1975 3 3 3 3 3 3 536480 10376 1461 10277 16182;16183 21137;21138;21139 21139 3 KITIGQAPTEK Unmodified 1184.6765 0.6764876 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 8 0 1 43.129 43.129 3 0.0013043 10879 TMT1-7 57.804 31.865 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10377 657 10278 16184 21140 21140 1 KIVAEYEK Unmodified 978.5386 0.53859714 274 O75410-10;O75410-5;O75410-4;O75410-6;O75410-3;O75410-7;O75410-9;O75410;O75410-2;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359 TACC1;TACC2 Transforming acidic coiled-coil-containing protein 1;Transforming acidic coiled-coil-containing protein 2 yes no 0 0 0 0 1 6 0 1 41.602 41.602 3 0.0078676 10819 TMT1-5 50.108 8.6594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10378 274 10279 16185 21141 21141 1 KIVEACK Unmodified 846.46332 0.4633237 2742 Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 1 7 0 1 36.5 36.5 3 0.027619 8210 TMT1-6 71.223 39.002 107.99 137.41 127.76 116.68 132.75 181.7 102 138 131 116 138 174 1 1 1 1 1 1 5801.5 10379 2742 10280 16186 21142 21142 1 KIVITDCGQLS Unmodified 1232.6435 0.64347291 958 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 1 7 0 1 52.859 52.859 3 0.0027118 14609 TMT1-6 79.693 63.061 177.35 292.55 242.21 196.64 225.56 357.07 168 290 249 197 236 341 1 1 1 1 1 1 80069 10380 958 10281 16187 21143 21143 1 KIVTYPGELLLQGVHDDVDIILLQD Unmodified 2805.5164 0.51641172 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 1 6.33 0.471 2 1 90.9 90.9 3;4 4.7229E-19 29924 TMT1-5 104.58 102.57 84.438 122.98 131.38 81.695 76.687 145.99 80 123 132 81 80 139 4 4 4 3 3 4 20860 10381 2818 10282 16188;16189;16190 21144;21145;21146;21147 21144 4 KIWCFGPDGTGPNILTDITK Unmodified 2232.1249 0.12488952 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 9 0 2 74.324 74.324 3;4 7.156E-13 21323 TMT1-8 86.96 64.085 143.9 334.26 237.15 209.35 321.3 293.58 137 327 247 210 326 284 3 3 3 3 3 3 61398 10382 685 10283 16191;16192 21148;21149;21150 21148 3 KIYDVEQTR Unmodified 1150.5982 0.59823728 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 1 5 0 1 38.084 38.084 3 0.014711 9278 TMT1-4 67.214 41.997 191.86 276.97 161.37 209.17 164.54 289.52 181 275 174 203 176 276 1 1 1 1 1 1 11730 10383 1723 10284 16193 21151 21151 1 KIYVIEGTSK Unmodified 1136.6441 0.64412484 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 1 8 0 1 46.841 46.841 3 0.0090319 12354 TMT1-7 44.71 33.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10384 817 10285 16194 21152 21152 1 KKIENLTSAVNSLNFIIK Unmodified 2031.1728 0.17282599 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 2 9 0 1 69.253 69.253 4 0.00033243 19391 TMT1-8 62.765 43.73 283.81 396.22 294.31 259.96 296.8 360.37 268 395 306 259 307 346 2 2 2 2 2 2 27149 10385 1684 10286 16195 21153;21154 21153 2 KKLEVLQSQK Unmodified 1199.7238 0.72377215 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 2 9 0 1 41.211 41.211 4 0.0030956 8543 TMT1-8 91.937 61.065 122.63 191.43 147.01 120.03 125.92 162.7 116 190 152 120 131 156 1 1 1 1 1 1 8204.3 10386 936 10287 16196 21155 21155 1 KKLVIVGDGACGK Unmodified 1343.7595 0.75950572 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 2 9 0 1 43.708 43.708 4 0.00088867 9359 TMT1-8 83.769 69.863 108.41 68.412 116.67 94.094 90.1 113.62 102 73 116 94 94 109 1 1 1 1 1 1 5547.8 10387 1393;556 10288 16197 21156 21156 1 KKPYIQLK Unmodified 1016.6383 0.6382516 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 2 9 0 1 42.509 42.509 4 0.016708 8944 TMT1-8 72.547 39.707 256.29 314.97 301.1 244.34 234.09 288.6 242 317 307 244 244 277 1 1 1 1 1 1 8502.8 10388 3012 10289 16198 21157 21157 1 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER Unmodified 3517.7122 0.71224454 1491;2068;2510 P68363;Q71U36-2;Q71U36;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 1 9 0 1 78.874 78.874 4 8.2911E-07 23121 TMT1-8 56.294 41.014 38.084 58.443 41.906 44.964 33.5 60.872 36 58 44 44 36 58 1 1 1 1 1 1 21476 10389 1491;2068;2510 10290 16199 21158 21158 1 KLAEQEAHYAVR Unmodified 1413.7365 0.7364621 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 1 5 0 1 34.502 34.502 4 0.00014534 7870 TMT1-4 94.09 63.049 268.31 469.3 313.21 370.44 406.67 516.07 254 463 332 363 422 495 1 1 1 1 1 1 33207 10390 2753 10291 16200 21159 21159 1 KLAETLGR Unmodified 886.52362 0.52361577 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 1 8 0 1 37.916 37.916 3 0.0047295 8774 TMT1-7 93.111 43.086 441.57 416.97 453.79 447.34 405.32 696.26 416 427 463 441 430 664 1 1 1 1 1 1 74053 10391 1149 10292 16201 21160 21160 1 KLAEVGR Unmodified 771.46029 0.46028724 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 7 0 1 33.007 33.007 3 0.0096099 6774 TMT1-6 90.37 34.359 407.21 462.44 418.18 339.45 327.4 520.46 384 467 428 339 345 497 1 1 1 1 1 1 164400 10392 565 10293 16202 21161 21161 1 KLAPEYEK Unmodified 976.52295 0.52294707 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 6 0 1 39.902 39.902 3 0.011135 10093 TMT1-5 78.655 26.66 269.47 427.37 334.76 283.21 385.36 400.48 255 424 346 284 394 386 1 1 1 1 1 1 39180 10393 686 10294 16203 21162 21162 1 KLAPITYPQGLALAK Unmodified 1582.9447 0.94466396 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 1 9 0 2 61.129 61.129 3;4 8.8139E-07 16124 TMT1-8 98.58 69.948 314.56 498.82 270.62 334.34 369.11 409.47 297 493 293 327 381 394 3 3 3 3 3 3 127380 10394 717 10295 16204;16205 21163;21164;21165 21163 3 KLAPPLVTLLSAEPELQYVALR Unmodified 2420.4043 0.40428249 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 1 9 0 1 84.33 84.33 4 0.00099714 25258 TMT1-8 46.578 36.997 23.302 36.396 20.168 29.975 27.666 37.587 22 36 22 29 29 36 1 1 1 1 1 1 3499.6 10395 1637 10296 16206 21166 21166 1 KLAQLEK Unmodified 828.5069 0.50690308 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 no no 0 0 0 0 1 8 0 1 41.524 41.524 3 0.029415 10243 TMT1-7 69.812 6.3928 251.2 661.84 321.54 290.53 386.7 443.08 239 643 347 290 397 426 1 1 1 1 1 1 16622 10396 993 10297 16207 21167 21167 1 KLAQQYYLVYQEPIPTAQLVQR Unmodified 2648.4326 0.43262251 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 1 9 0 1 65.571 65.571 4 1.5161E-06 17964 TMT1-8 63.331 55.527 23.103 59.586 33.981 28.723 50.465 45.464 22 58 36 29 51 44 1 1 1 1 1 1 20631 10397 891 10298 16208 21168 21168 1 KLAVEPK Unmodified 783.48544 0.48543935 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 1 7.5 0.5 1 1 39.15 39.15 3 0.013739 9210 TMT1-7 84.498 31.331 1261.3 1878.5 1565.4 1390.1 1324.1 1981.2 1193 1870 1614 1380 1392 1894 2 2 2 2 2 2 80074 10398 683 10299 16209;16210 21169;21170 21170 2 KLAVNMVPFPR Unmodified 1270.722 0.72199801 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 0 0 1 5 4 1 1 57.688 57.688 3 2.272E-08 14628 TMT1-8 141.88 110.99 1383.4 1914.6 1391.8 1192.6 1335.9 2085.4 1306 1909 1448 1190 1398 1992 3 3 3 3 3 3 268380 10399 537;1493;1932;2650;1713 10300 16211;16212 21171;21172;21173 21173 3 KLAVNMVPFPR Oxidation (M) 1286.7169 0.71691263 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 1 0 1 9 0 1 50.393 50.393 3 0.011267 11889 TMT1-8 55.353 31.977 169.64 175.78 193.56 159.7 193.59 179.96 160 179 196 160 198 174 1 1 1 1 1 1 24247 10400 537;1493;1932;2650;1713 10300 16213 21174 21174 92 1 KLAYVAAGDLAPINAFIGGLAAQEVMK Unmodified 2730.4779 0.47785814 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 9 0 1 88.429 88.429 4 5.2027E-09 26826 TMT1-8 67.496 54.041 23.33 21.362 28.281 38.104 34.622 37.388 22 22 29 37 36 36 1 1 1 1 1 1 6051.6 10401 845 10301 16214 21175 21175 1 KLDALCNIHENIR Unmodified 1594.825 0.82495953 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 7 0 1 45.595 45.595 4 0.0010381 11744 TMT1-6 74.816 50.984 138.68 209.64 139.12 100.96 118.57 158.65 131 208 145 102 123 152 1 1 1 1 1 1 22763 10402 1287 10302 16215 21176 21176 1 KLDEAVAEAHLGK Unmodified 1379.7409 0.74087877 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 1 6 0 1 47.267 47.267 4 0.0020529 13018 TMT1-5 67.93 46.63 193.76 436.23 428.45 265.49 158.8 533.8 185 429 432 269 181 505 1 1 1 1 1 1 35423 10403 864 10303 16216 21177 21177 1 KLDEFGR Unmodified 863.45012 0.45011648 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 1 6 0 1 39.175 39.175 3 0.031449 9821 TMT1-5 68.214 17.316 499.86 646.39 560.71 476.35 209.8 807.37 472 648 576 470 248 763 1 1 1 1 1 1 75293 10404 2344 10304 16217 21178 21178 1 KLDEQYQK Unmodified 1050.5346 0.53457439 1398 P61758-2;P61758 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 1 6 0 1 37.151 37.151 3 0.0055217 9033 TMT1-5 90.696 21.961 190.87 346.54 268.13 147.84 239.3 326.83 181 342 274 154 246 313 1 1 1 1 1 1 17152 10405 1398 10305 16218 21179 21179 1 KLDHCLPLHGK Unmodified 1316.7023 0.7023252 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 1 8 0 1 37.396 37.396 4 0.014386 8574 TMT1-7 55.452 33.895 224.89 386.49 286.91 251.61 299.53 292.06 213 382 298 251 307 282 1 1 1 1 1 1 19929 10406 2378 10306 16219 21180 21180 1 KLDLEAWFPGSGAFR Unmodified 1692.8624 0.86239089 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 9 0 1 73.861 73.861 3 0.00040292 21179 TMT1-8 70.748 49.908 129.7 264.18 158.79 121.13 204.25 164.73 123 259 167 123 206 160 1 1 1 1 1 1 29409 10407 1186 10307 16220 21181 21181 1 KLDLFANVVHVK Unmodified 1381.8082 0.80817048 207 O43837;O43837-2 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 1 9 0 1 59.546 59.546 4 0.0024287 15504 TMT1-8 62.14 35.542 77.398 102.14 69.914 57.328 100.97 89.861 73 102 73 58 102 87 1 1 1 1 1 1 8396.8 10408 207 10308 16221 21182 21182 1 KLDPELHLDIK Unmodified 1319.7449 0.74490152 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 1 6 0 1 53.061 53.061 4 0.00033074 15333 TMT1-5 95.508 63.868 541.78 960.34 642.44 545.81 499.49 776.72 513 947 672 543 527 742 1 1 1 1 1 1 53545 10409 1654 10309 16222 21183 21183 1 KLDPGSEETQTLVR Unmodified 1571.8155 0.81550028 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 5 0 1 44.191 44.191 3 2.2479E-14 11704 TMT1-4 131.61 111.51 604.12 967.34 799.59 644.99 714.23 909.17 572 960 822 646 741 872 1 1 1 1 1 1 108400 10410 904 10310 16223 21184 21184 1 KLDSELTAR Unmodified 1031.5611 0.56112349 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 5.5 0.5 1 1 38.167 38.167 3 0.011347 9300 TMT1-4 71.524 34.831 740.14 1184.1 838.96 886.71 987.35 1374.7 700 1173 881 874 1028 1316 2 2 2 2 2 2 115910 10411 228 10311 16224;16225 21185;21186 21185 2 KLDSGGFYITSR Unmodified 1342.6881 0.68811492 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 1 8 0 1 48.486 48.486 3 0.0047249 12949 TMT1-7 69.878 44.661 483.77 453.04 544.16 357.24 551.07 532.2 456 465 545 366 560 514 2 2 2 2 2 2 63082 10412 673 10312 16226 21187;21188 21187 2 KLDSLTTSFGFPVGAATLVDEVGVDVAK Unmodified 2835.4906 0.4905909 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 1 7.67 0.471 2 4 85.939 85.939 3;4;5 1.5834E-29 27640 TMT1-6 124.5 110.44 222.48 389.13 329.22 197.22 267.63 349.47 211 385 335 203 276 335 5 5 5 5 5 5 71584 10413 1076 10313 16227;16228;16229;16230;16231;16232 21189;21190;21191;21192;21193;21194;21195 21190 7 KLDVSVK Unmodified 787.48035 0.48035398 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 8 0 1 42.748 42.748 3 0.032278 10685 TMT1-7 67.563 2.7265 496.67 575.45 616.49 486.03 622.23 755.09 469 582 624 489 641 725 1 1 1 1 1 1 84279 10414 2525 10314 16233 21196 21196 1 KLEAAEDIAYQLSR Unmodified 1605.8362 0.83623572 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 1 6 0 1 62.811 62.811 3 5.6472E-10 19241 TMT1-5 117.2 90.226 293.75 365.04 273.65 278.79 349.45 416.43 277 366 286 276 360 400 2 2 2 2 2 2 67103 10415 1012 10315 16234 21197;21198 21198 2 KLEAAEER Unmodified 944.49271 0.49270958 752 P16949;P16949-2;Q9H169-3;Q9H169;Q9H169-4;Q9H169-2 STMN1;STMN4 Stathmin;Stathmin-4 no no 0 0 0 0 1 4 0 1 30.276 30.276 3 0.037893 6482 TMT1-3 60.342 17.478 326.24 705.27 476.2 419.32 429.54 546.33 310 691 498 417 447 524 1 1 1 1 1 1 40604 10416 752 10316 16235 21199 21199 1 KLEAELLQIEER Unmodified 1469.809 0.80895834 2346 Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 1 5 0 1 60.29 60.29 3 0.0013525 18028 TMT1-4 56.793 33.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10417 2346 10317 16236 21200 21200 1 KLEAMTNSK Unmodified 1020.5274 0.52738052 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 7.67 0.471 1 2 39.76 39.76 3;4 0.0009981 9459 TMT1-7 96.342 50.345 2021.3 2026.7 2105.5 1438.5 1804.2 2802.2 1905 2066 2127 1462 1880 2677 4 4 4 4 4 4 281740 10418 776 10318 16237;16238;16239 21201;21202;21203;21204 21204 4 KLEAMTNSK Oxidation (M) 1036.5223 0.52229515 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 1 8 0 1 32.512 32.512 4 0.038849 6781 TMT1-7 47.938 29.778 123.6 90.529 68.942 89.544 76.457 90.56 116 94 73 87 80 87 1 1 1 1 1 1 4269.5 10419 776 10318 16240 21205 21205 140 1 KLEAQNTEAAR Unmodified 1229.6364 0.6364137 11 A6NC98;A6NC98-2;A6NC98-4;A6NC98-3 CCDC88B Coiled-coil domain-containing protein 88B yes no 0 0 0 0 1 5 0 1 29.408 29.408 3 0.0090551 5870 TMT1-4 43.544 18.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10420 11 10319 16241 21206 21206 1 KLEATIIGEWVK Unmodified 1385.7919 0.79185171 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 1 8 0 1 67.218 67.218 3 0.0021352 20384 TMT1-7 76.759 45.531 203.17 278.03 243.2 239.67 259.31 321.99 192 278 251 237 269 309 1 1 1 1 1 1 22629 10421 2866 10320 16242 21207 21207 1 KLEDGPK Unmodified 785.42832 0.42831841 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 5.5 0.5 1 1 34.112 34.112 3 0.0046457 7906 TMT1-5 101.64 47.094 3105.6 5320.2 3183.8 3206.3 4703 4995.4 2937 5247 3384 3188 4801 4812 2 2 2 2 2 2 582850 10422 1490 10321 16243;16244 21208;21209 21209 2 KLEDQLQGGQLEEVILQAEHELNLAR Unmodified 2972.5567 0.5567134 1902 Q16718-2;Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 1 5 0 1 82.763 82.763 4 8.2318E-08 26907 TMT1-4 69.845 64.004 53.863 87.764 70.122 50.382 62.808 83.488 51 87 72 51 65 80 2 2 2 2 2 2 8937.2 10423 1902 10322 16245 21210;21211 21211 2 KLEEEGEQFVK Unmodified 1334.6718 0.67179615 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 1 4.5 0.5 1 1 48.78 48.78 3 0.0021824 13467 TMT1-4 83.087 64.012 322.03 612.79 360.42 350.02 471.08 525.95 305 602 383 348 483 506 2 2 2 2 2 2 37123 10424 844 10323 16246;16247 21212;21213 21213 2 KLEEEQIILEDQNCK Unmodified 1887.9248 0.92479273 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3.33 1.37 1 1 3 1 54.049 54.049 3;4 4.25E-15 15672 TMT1-3 135.02 105.04 6962.3 9922.4 8605.5 7093.6 8759.6 9720.3 6583 9902 8828 7110 9005 9353 11 11 11 11 11 11 1101200 10425 1019 10324 16248;16249;16250;16251;16252;16253 21214;21215;21216;21217;21218;21219;21220;21221;21222;21223;21224 21221 11 KLEELELDEQQR Unmodified 1528.7733 0.77330111 1569 Q02750;Q02750-2 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 0 0 1 3 0 1 48.88 48.88 3 0.0033939 14799 TMT1-2 73.415 47.291 77.194 77.828 124.86 71.051 68.915 121.69 73 80 123 73 73 116 1 1 1 1 1 1 15241 10426 1569 10325 16254 21225 21225 1 KLEELEQK Unmodified 1015.555 0.55497548 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 1 5 0 1 44.408 44.408 3 0.0018829 11796 TMT1-4 111.06 17.946 631.36 1126.6 774.65 841.47 1039.7 1130.1 598 1111 816 830 1068 1088 1 1 1 1 1 1 37262 10427 1091 10326 16255 21226 21226 1 KLEELQQK Unmodified 1014.571 0.5709599 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 1 6 0 1 41.504 41.504 3 0.010573 10773 TMT1-5 79.16 13.813 899.73 1165.9 902.23 808.73 1271.6 1212 849 1167 936 811 1291 1171 1 1 1 1 1 1 36624 10428 1073 10327 16256 21227 21227 1 KLEGDSTDLSDQIAELQAQIAELK Unmodified 2614.3338 0.3337559 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 6.5 0.866 1 3 3 1 85.656 85.656 4;5 4.4931E-37 27187 TMT1-6 143.29 120.06 1325.5 1746.2 1708.3 1194 1651.6 1692.6 1253 1752 1731 1214 1687 1632 12 12 12 12 12 12 511860 10429 1019 10328 16257;16258;16259;16260;16261;16262;16263;16264 21228;21229;21230;21231;21232;21233;21234;21235;21236;21237;21238;21239 21235 12 KLEGNSPQGSNQGVK Unmodified 1541.7798 0.77978347 1366 P61006 RAB8A Ras-related protein Rab-8A yes yes 0 0 0 0 1 6.5 0.5 1 1 34.213 34.213 3;4 3.4748E-11 7400 TMT1-6 105.79 81.957 139.05 150.24 126.49 124.24 141.31 135.61 131 152 131 123 145 131 1 1 1 1 1 1 7140.2 10430 1366 10329 16265;16266 21240;21241 21241 2 KLEHLITELVHQR Unmodified 1614.9206 0.92057447 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 8 0 1 59.378 59.378 4 0.027628 17311 TMT1-7 46.318 26.193 53.939 72.865 70.009 97.281 68.515 98.249 51 73 73 94 73 94 1 1 1 1 1 1 7377.9 10431 1763 10330 16267 21242 21242 1 KLELQVESMLSEIK Unmodified 1645.8961 0.89605879 2386 Q96CV9-3;Q96CV9;Q96CV9-2 OPTN Optineurin yes no 0 0 0 0 1 7 0 1 75.606 75.606 3 0.033725 23639 TMT1-6 48.883 19.151 77.752 55.635 49.885 35.17 64.058 67.462 73 58 51 36 65 65 1 1 1 1 1 1 4205.3 10432 2386 10331 16268 21243 21243 1 KLELSDNIISGGLEVLAEK Unmodified 2027.115 0.11503634 2534 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 1 7 0 1 78.984 78.984 4 3.5687E-11 24883 TMT1-6 104.06 87.827 152.81 364.79 157.31 186.32 171.64 265.87 145 355 174 182 181 254 2 2 2 2 2 2 37450 10433 2534 10332 16269 21244;21245 21244 2 KLELSENR Unmodified 987.53491 0.53490874 2311 Q92688-2;Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 1 6 0 1 36.329 36.329 3 0.032611 8685 TMT1-5 62.823 30.217 424.57 573.14 473 317.79 491.35 496.59 401 573 484 325 500 479 1 1 1 1 1 1 85715 10434 2311 10333 16270 21246 21246 1 KLEMDLK Unmodified 875.47864 0.47863942 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 7 0 1 48.231 48.231 3 0.011763 12788 TMT1-6 87.308 26.718 2280.3 3244.3 2819.7 2220.8 3045.1 3542.8 2156 3238 2888 2238 3125 3405 1 1 1 1 1 1 302510 10435 1019 10334 16271 21247 21247 1 KLENCNYAVELGK Unmodified 1536.7606 0.76062794 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 1 4.67 2.62 1 1 1 49.934 49.934 3 8.0304E-12 13947 TMT1-5 151.56 0 1047.1 1967.3 1059.4 1188.4 1505.4 1724.5 991 1932 1142 1171 1548 1658 5 5 5 5 5 5 242240 10436 690;691 10335 16272;16273;16274 21248;21249;21250;21251;21252 21249 5 KLENDTISK Unmodified 1046.5608 0.56078914 1885 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 0 1 6 0 1 39.144 39.144 3 0.018868 9860 TMT1-5 64.64 54.588 146.02 208.64 168.88 113.39 177.34 197.48 138 208 173 116 181 190 1 1 1 1 1 1 9793.7 10437 1885 10336 16275 21253 21253 1 KLEQLKPR Unmodified 1010.6237 0.62366417 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 2 9 0 1 38.425 38.425 4 0.0067207 7498 TMT1-8 89.029 52.501 17432 22170 20526 15584 20414 24198 16464 22264 20923 15729 20995 23246 3 3 3 3 3 3 422240 10438 3010;3014 10337 16276 21254;21255;21256 21254 3 KLETAVNLAWTAGNSNTR Unmodified 1945.0017 0.0017379196 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 1 9 0 1 58.204 58.204 3 3.2874E-14 15007 TMT1-8 119.56 99.98 99.544 138.38 104.2 110.68 119.39 152.23 94 138 109 109 124 146 2 2 2 2 2 2 33325 10439 833 10338 16277 21257;21258 21257 2 KLEVEANNAFDQYR Unmodified 1695.8216 0.82164829 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 4 2.16 1 1 1 51.674 51.674 3 1.287E-27 14589 TMT1-4 187.89 165.08 1582.3 2441.6 1784.2 1803 1404.3 2385.1 1496 2423 1866 1771 1500 2275 4 4 4 4 4 4 329280 10440 1144;1145 10339 16278;16279;16280 21259;21260;21261;21262 21260 4 KLEVLEEEVR Unmodified 1242.682 0.68196691 11 A6NC98;A6NC98-5 CCDC88B Coiled-coil domain-containing protein 88B yes no 0 0 0 0 1 4 0 1 52.475 52.475 3 0.0082445 15251 TMT1-3 46.069 21.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10441 11 10340 16281 21263 21263 1 KLEVLQSQK Unmodified 1071.6288 0.62880913 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 1 8 0 1 44.317 44.317 3 0.0014225 11315 TMT1-7 99.215 41.723 449.95 734.58 578.31 526.71 614.29 535.72 426 728 599 524 628 519 1 1 1 1 1 1 89622 10442 936 10341 16282 21264 21264 1 KLEWPLTEVAEGVFETEAPGGYK Unmodified 2549.269 0.2689708 2688 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 1 6 0 1 80.698 80.698 4 1.1433E-17 26298 TMT1-5 107.47 85.869 138.71 173.03 164.96 104.56 194 181.01 131 174 167 108 196 175 3 3 3 3 3 3 13167 10443 2688 10342 16283 21265;21266;21267 21267 3 KLFDQANK Unmodified 962.51853 0.5185304 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 1 8 0 1 42.433 42.433 3 0.0030245 10641 TMT1-7 100.25 49.186 350.45 454.76 406.48 424.46 377.04 514.78 331 456 420 417 396 493 1 1 1 1 1 1 35991 10444 2852 10343 16284 21268 21268 1 KLFEAEEQDLFK Unmodified 1495.7559 0.75586013 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 6 0 1 62.755 62.755 3 0.0010747 19162 TMT1-5 81.185 53.216 153.1 238.24 215.89 134.64 176.89 212.42 145 237 219 138 182 204 1 1 1 1 1 1 21184 10445 2654 10344 16285 21269 21269 1 KLFEAEEQDLFR Unmodified 1523.762 0.76200815 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 1 5 0 1 61.142 61.142 3 7.4285E-06 18368 TMT1-4 113.86 73.838 207.19 357.92 221.22 333.48 222.56 352.89 196 353 239 321 239 337 1 1 1 1 1 1 33868 10446 2802 10345 16286 21270 21270 1 KLFEELVR Unmodified 1032.5968 0.59678072 707 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 0 1 7.5 0.5 1 1 56.092 56.092 3 0.026835 15901 TMT1-6 65.535 29.218 284.68 588.93 346.95 348.88 400.13 491.73 270 577 369 345 414 472 2 2 2 2 2 2 52208 10447 707 10346 16287;16288 21271;21272 21271 2 KLFIGGLSFETTDDSLR Unmodified 1897.9785 0.97854286 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 8 0 1 68.312 68.312 3 2.0599E-10 20808 TMT1-7 115.53 104.25 99.663 138.71 84.019 199 136.81 166.66 94 138 94 189 145 160 1 1 1 1 1 1 32146 10448 1259 10347 16289 21273 21273 1 KLFIGGLSFETTDESLR Unmodified 1911.9942 0.99419293 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 1 8 0 1 67.707 67.707 3 1.3277E-28 20577 TMT1-7 167.28 157.62 332.23 744.41 337.91 336.93 308.96 604.13 315 726 369 332 330 575 1 1 1 1 1 1 116650 10449 601 10348 16290 21274 21274 1 KLFIGGLSFETTEESLR Unmodified 1926.0098 0.0098429899 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 8.5 0.5 1 1 67.719 67.719 2;3 7.7296E-07 20632 TMT1-7 99.834 86.025 76.968 148.43 102.95 127.75 87.489 144.61 73 146 109 124 94 138 2 2 2 2 2 2 24712 10450 848 10349 16291;16292 21275;21276 21275 2 KLFLVQLQEK Unmodified 1244.7493 0.74925861 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 1 9 0 1 60.554 60.554 3 0.0087379 15934 TMT1-8 76.332 40.68 84.728 123.79 82.009 95.861 105.98 105.71 80 123 87 94 109 102 1 1 1 1 1 1 6200.3 10451 204 10350 16293 21277 21277 1 KLFSFTPAWNWTCK Unmodified 1784.8708 0.87084709 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 1 9 0 1 72.674 72.674 3 0.00032772 20716 TMT1-8 78.508 48.092 46.146 111.45 84.718 56.051 121.96 120.18 44 109 87 58 123 116 1 1 1 1 1 1 14108 10452 2914 10351 16294 21278 21278 1 KLFVGGLK Unmodified 860.54837 0.54837396 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 1 9 0 1 51.677 51.677 3 0.018963 12451 TMT1-8 72.23 0 176.72 382.54 271.58 314.93 293.69 377.51 168 375 286 308 307 362 1 1 1 1 1 1 11898 10453 1675 10352 16295 21279 21279 1 KLFVQDLATR Unmodified 1189.6819 0.68190733 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 1 9 0 1 50.961 50.961 3 0.0055262 12169 TMT1-8 63.401 31.467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10454 998 10353 16296 21280 21280 1 KLFYSTFATDDRK Unmodified 1590.8042 0.80420731 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 2 9 0 1 50.188 50.188 4 1.0384E-05 11863 TMT1-8 102.65 77.72 261.89 303.39 271.1 204.01 265.45 403.9 247 306 277 206 276 386 1 1 1 1 1 1 9690.2 10455 952 10354 16297 21281 21281 1 KLGCEVLGVSVDSQFTHLAWINTPR Unmodified 2826.4487 0.44868328 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 1 9 0 1 69.977 69.977 4 2.9198E-32 19657 TMT1-8 131.56 115.79 130.38 127.92 159.67 114.91 125.46 182.97 123 131 160 116 131 175 2 2 2 2 2 2 13502 10456 989 10355 16298 21282;21283 21282 2 KLGEMWSEQSAK Unmodified 1392.6708 0.6707503 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 1 7 0 1 49.6 49.6 3 0.00025337 13349 TMT1-6 94.673 53.69 192.34 345.41 201.98 274.01 249.18 296.7 182 340 218 266 260 285 1 1 1 1 1 1 28558 10457 900 10356 16299 21284 21284 1 KLGGSLADSYLDEGFLLDK Unmodified 2040.0415 0.041537049 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 1 7 0 1 72.559 72.559 4 0.00086466 22460 TMT1-6 53.779 33.867 46.376 80.789 72 42.76 55.317 98.626 44 80 73 44 58 94 1 1 1 1 1 1 6890.1 10458 1504 10357 16300 21285 21285 1 KLGGSQEDQIK Unmodified 1201.6303 0.63026569 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 6 0 1 37.928 37.928 3 3.1001E-06 9347 TMT1-5 125.54 59.275 1043 1754.4 1211.8 1090.3 1415.6 1669.5 987 1734 1267 1088 1456 1604 2 2 2 2 2 2 84610 10459 1053 10358 16301 21286;21287 21287 2 KLGGTIDDCELVEGLVLTQK Unmodified 2187.1457 0.14568454 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 1 6 0 1 71.394 71.394 3 1.8648E-05 22583 TMT1-5 75.611 52.512 61.747 56.987 33.6 36.397 50.405 36.938 58 58 36 36 51 36 1 1 1 1 1 1 10916 10460 1233 10359 16302 21288 21288 1 KLGLVFDDVVGIVEIINSK Unmodified 2057.1772 0.17724267 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 9 0 1 99.477 99.477 4 1.0059E-08 30868 TMT1-8 80.596 55.006 176.5 278.13 217.38 190.58 161.89 257.62 167 276 225 189 167 246 4 4 4 4 3 4 16100 10461 1555;1556 10360 16303 21289;21290;21291;21292 21290 4 KLGQSESQGPPR Unmodified 1282.663 0.6629628 56 O00233;O00233-2 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 1 6 0 1 29.979 29.979 3 1.4225E-05 6245 TMT1-5 110.92 87.525 84.912 61.7 103.74 55.877 70.932 83.256 80 65 102 58 73 80 1 1 1 1 1 1 6610 10462 56 10361 16304 21293 21293 1 KLHQDEK Unmodified 896.47158 0.4715802 1752 Q14141-2;Q14141-4;Q14141 SEPT6 Septin-6 yes no 0 0 0 0 1 6 0 1 26.123 26.123 4 0.003712 4802 TMT1-5 96.253 19.195 324.45 185.64 316.07 171.96 316.04 161.54 305 200 311 180 315 160 1 1 1 1 1 1 9904.8 10463 1752 10362 16305 21294 21294 1 KLIASMSSDSLR Oxidation (M) 1322.6864 0.68640036 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 1 8.5 0.5 1 1 39.5 39.5 3 0.0013137 8008 TMT1-8 69.795 40.55 253.5 264.58 271.78 217.64 235.86 364.24 239 269 276 218 247 348 2 2 2 2 2 2 29459 10464 393 10363 16306;16307 21295;21296 21296 36 2 KLIASMSSDSLR Unmodified 1306.6915 0.69148574 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 9 0 1 48.099 48.099 2 3.6273E-05 11013 TMT1-8 108.2 70.604 38.07 50.849 50.715 27.478 63.605 90.927 36 51 51 29 65 87 1 1 1 1 1 1 12045 10465 393 10363 16308 21297 21297 1 KLIDEMVGK Unmodified 1031.5685 0.56851706 296 O75695 RP2 Protein XRP2 yes yes 0 0 0 0 1 7 0 1 57.216 57.216 3 0.0035509 16374 TMT1-6 55.426 30.634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10466 296 10364 16309 21298 21298 1 KLIELQAGK Unmodified 998.61243 0.61243078 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 1 8 0 1 47.85 47.85 3 0.00059992 12766 TMT1-7 110.38 35.462 276.32 320.14 356.88 270.32 361.26 388.38 261 324 360 273 370 374 1 1 1 1 1 1 17906 10467 700 10365 16310 21299 21299 1 KLIELQAGKK Unmodified 1126.7074 0.7073938 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 2 9 0 1 44.144 44.144 4 0.014134 9520 TMT1-8 69.65 34.236 213.88 281.56 243.04 140.2 202 326.83 202 282 247 145 210 312 1 1 1 1 1 1 14054 10468 700 10366 16311 21300 21300 1 KLIGEVSSGSGETFSYPDFLR Unmodified 2288.1325 0.13247732 1306 P55008;P55008-2;P55008-3 AIF1 Allograft inflammatory factor 1 yes no 0 0 0 0 1 7.33 0.471 2 1 68.326 68.326 3;4 1.3294E-07 20732 TMT1-6 89.04 76.981 153.89 172.44 138.79 156.62 124.35 159.55 145 174 145 153 131 153 2 2 2 2 2 2 25796 10469 1306 10367 16312;16313;16314 21301;21302;21303 21301 3 KLIIDVIR Unmodified 968.63825 0.6382516 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 9 0 1 55.487 55.487 3 0.016386 13918 TMT1-8 75.378 42.379 231.24 253.94 233.98 184.53 256.49 203.75 218 257 239 186 260 198 1 1 1 1 1 1 16721 10470 1723 10368 16315 21304 21304 1 KLITSMR Unmodified 847.49496 0.49495818 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 9 0 1 38.943 38.943 3 0.014071 7726 TMT1-8 94.806 43.908 929.1 1156.8 1203 867.36 979.03 1368.5 878 1165 1216 876 1019 1310 1 1 1 1 1 1 48708 10471 3010 10369 16316 21305 21305 1 KLLASLVK Unmodified 870.59024 0.59023878 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 1 9 0 1 55.437 55.437 3 0.0061138 13870 TMT1-8 93.111 26.419 122.66 185.04 147.61 115.33 141.3 178.25 116 184 152 116 146 171 1 1 1 1 1 1 12485 10472 1688 10370 16317 21306 21306 1 KLLDDIK Unmodified 843.50657 0.50656873 48 O00186 STXBP3 Syntaxin-binding protein 3 yes no 0 0 0 0 1 7 0 1 50.415 50.415 3 0.01061 13668 TMT1-6 88.948 0 263.2 334.38 385.03 373.58 419.24 572.2 249 337 391 370 436 548 1 1 1 1 1 1 20950 10473 48 10371 16318 21307 21307 1 KLLDSWFTSTQEK Unmodified 1581.8039 0.80387296 2184 Q8N5M9 JAGN1 Protein jagunal homolog 1 yes yes 0 0 0 0 1 9 0 1 65.154 65.154 3 0.0036798 17761 TMT1-8 58.752 37.195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10474 2184 10372 16319 21308 21308 1 KLLEAHEEQNVDSYTESVK Unmodified 2218.0754 0.075356373 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 1 5 0 1 48.12 48.12 4 6.7189E-06 13238 TMT1-4 77.871 62.617 192.55 162.34 141.39 107.46 172.99 118.72 181 167 145 109 174 116 1 1 1 1 1 1 10292 10475 1304 10373 16320 21309 21309 1 KLLEGEEER Unmodified 1101.5666 0.5666028 816;1577;429 P20700;Q03252;P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNB1;LMNB2;LMNA Lamin-B1;Lamin-B2;Prelamin-A/C;Lamin-A/C no no 0 0 0 0 1 4 0 1 36.916 36.916 3 0.00055345 9070 TMT1-3 113.63 69.426 271.63 432.66 327.96 306.92 483.02 388.1 257 429 341 307 488 377 1 1 1 1 1 1 32151 10476 816;1577;429 10374 16321 21310 21310 1 KLLEGEESR Unmodified 1059.556 0.55603812 575 P08670;P17661;P41219-2;P41219;P05787-2;P05787;CON__Q9DCV7;CON__P08729;P08729;CON__P05787;CON__Q3KNV1;CON__Q9H552 VIM;DES;PRPH;KRT8;KRT7 Vimentin;Desmin;Peripherin;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7 yes no 0 0 0 0 1 5 0.816 1 1 1 36.087 36.087 3 0.00055608 8547 TMT1-4 113.44 69.068 2209.4 3444.9 1927 2082.1 2728.2 3056.2 2086 3408 2068 2057 2800 2940 5 5 5 5 5 5 359020 10477 575 10375 16322;16323;16324 21311;21312;21313;21314;21315 21314 5 KLLETECPQYIR Unmodified 1548.797 0.79701344 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 1 6 0 1 47.919 47.919 3 1.6272E-10 13296 TMT1-5 156.08 125.18 283.56 571.6 369.66 324.01 546.27 564.32 269 561 388 326 555 544 1 1 1 1 1 1 70648 10478 486 10376 16325 21316 21316 1 KLLGSALALAR Unmodified 1111.7077 0.70772815 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 1 9 0 1 56.4 56.4 3 0.0030217 14310 TMT1-8 81.278 43.678 208 183.19 232 156.67 233.12 251.32 196 189 232 160 238 242 1 1 1 1 1 1 15557 10479 477 10377 16326 21317 21317 1 KLLHSFLAK Unmodified 1055.6492 0.64915064 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 1 9 0 1 50.546 50.546 4 0.013634 11980 TMT1-8 52.49 28.154 146.32 141.5 174.29 106.53 118.02 167.19 138 145 174 109 123 160 1 1 1 1 1 1 8993.1 10480 2980 10378 16327 21318 21318 1 KLLPDDPYEK Unmodified 1216.634 0.63395408 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 1 6 0 1 50.246 50.246 3 0.0085844 14277 TMT1-5 72.089 28.577 221.77 279.05 361.34 207.41 205.3 323.54 210 282 359 213 216 309 1 1 1 1 1 1 36609 10481 1506 10379 16328 21319 21319 1 KLLSAAK Unmodified 729.47487 0.47487467 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 9 0 1 40.566 40.566 2 0.016651 8271 TMT1-8 132.57 48.323 84.766 105.55 91.034 87.872 95.364 120.93 80 106 94 87 99 116 1 1 1 1 1 1 20913 10482 3010 10380 16329 21320 21320 1 KLLSAEER Unmodified 944.5291 0.52909508 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 1 6 0 1 35.936 35.936 3 0.016125 8550 TMT1-5 74.173 34.171 250.18 427.69 329.86 249.13 295.16 453.16 237 423 340 251 308 433 1 1 1 1 1 1 22673 10483 2486 10381 16330 21321 21321 1 KLMVALAK Unmodified 872.55174 0.55174478 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 1 9 0 1 51.517 51.517 3 0.0049442 12375 TMT1-8 117.4 71.383 184.25 544.15 312.18 277.92 331.41 547 176 528 331 277 347 522 1 1 1 1 1 1 17391 10484 534 10382 16331 21322 21322 1 KLNAFGNAFLNR Unmodified 1363.7361 0.73606817 2654;2802 Q9H4M9;Q9NZN3;Q9NZN3-2 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 1 9 0 1 55.215 55.215 3 0.013918 13900 TMT1-8 62.705 38.718 68.532 155.91 71.826 113.02 97.862 105.94 65 152 80 109 102 102 1 1 1 1 1 1 59301 10485 2654;2802 10383 16332 21323 21323 1 KLNDLIK Unmodified 842.52255 0.52255314 2654;2802;2622 Q9H4M9;Q9NZN3;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 0 0 1 8 0 1 47.983 47.983 3 0.0046866 12868 TMT1-7 101.54 8.1681 1258.7 1838.4 1491 1219.1 1822.9 1819.9 1190 1831 1536 1228 1856 1756 2 2 2 2 2 2 220700 10486 2654;2802;2622 10384 16333 21324;21325 21325 2 KLNEILQAR Unmodified 1083.64 0.64004252 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 1 8 0 1 47.526 47.526 3 0.02784 12604 TMT1-7 59.84 34.266 107.65 169.93 157.31 113.93 184.95 218.58 102 169 160 116 189 210 1 1 1 1 1 1 14716 10487 2476 10385 16334 21326 21326 1 KLNEISK Unmodified 830.48617 0.48616764 768 P17931 LGALS3 Galectin-3 yes yes 0 0 0 0 1 7 0 1 39.383 39.383 3 0.032348 9319 TMT1-6 67.507 11.129 121.61 257.68 261.59 155.04 226.19 181.16 116 254 263 160 229 176 1 1 1 1 1 1 8579 10488 768 10386 16335 21327 21327 1 KLNEQSPTR Unmodified 1071.5673 0.5672715 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 1 6 0 1 27.913 27.913 3 0.001865 5401 TMT1-5 96.113 63.973 87.649 127.05 129.38 96.356 161.98 119.03 83 127 131 98 163 116 1 1 1 1 1 1 19625 10489 272 10387 16336 21328 21328 1 KLNVTEQEK Unmodified 1087.5873 0.58733824 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 1 5 2.35 1 2 1 38.051 38.051 3;4 8.3713E-05 9345 TMT1-5 142.83 103.2 5464.6 9644.1 7363.5 5520 6864.3 8106.1 5179 9526 7593 5570 7071 7788 5 5 5 5 5 5 1269300 10490 514 10388 16337;16338;16339;16340 21329;21330;21331;21332;21333 21331 5 KLPATTATPDSSK Unmodified 1315.6983 0.69834526 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 1 7 0 1 38.844 38.844 3 0.0029168 9128 TMT1-6 71.08 58.502 61.495 72.477 62.719 66.267 55.299 67.712 58 73 65 65 58 65 1 1 1 1 1 1 6975.9 10491 2369 10389 16341 21334 21334 1 KLPDIFQSYDR Unmodified 1380.7038 0.70376498 2001 Q658Y4;P0C866 FAM91A1;LINC00869 Protein FAM91A1;Putative uncharacterized protein encoded by LINC00869 yes no 0 0 0 0 1 8 0 1 59.257 59.257 3 0.0058362 17259 TMT1-7 49.097 35.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10492 2001 10390 16342 21335 21335 1 KLPDLEK Unmodified 841.49092 0.49091866 2774 Q9NX62 IMPAD1 Inositol monophosphatase 3 yes yes 0 0 0 0 1 7 0 1 46.282 46.282 3 0.033736 12058 TMT1-6 66.504 4.5051 210.32 290.56 292.03 194.52 180.75 355.15 199 291 295 197 193 338 1 1 1 1 1 1 10142 10493 2774 10391 16343 21336 21336 1 KLPEEVVK Unmodified 940.55933 0.55933258 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 1 6 0 1 43.598 43.598 3 0.022002 11601 TMT1-5 68.893 21.695 227.83 463.2 269.05 354.47 349.61 371.65 216 454 290 345 362 358 1 1 1 1 1 1 17234 10494 293 10392 16344 21337 21337 1 KLPIDVTEGEVISLGLPFGK Unmodified 2111.1878 0.18780736 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 1 8 0 1 80.9 80.9 4 6.6418E-10 25702 TMT1-7 94.358 85.311 460.63 584.59 533.35 473.76 550 773.15 435 587 547 472 572 740 2 2 2 2 2 2 94424 10495 901 10393 16345 21338;21339 21338 2 KLPVESIQIVLEELR Unmodified 1765.0349 0.034935528 2515 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 1 7.5 0.5 1 1 80.38 80.38 3 0.00013013 25451 TMT1-6 63.337 47.218 54.061 73.203 49.29 27.543 64.665 59.983 51 73 51 29 65 58 1 1 1 1 1 1 5210.2 10496 2515 10394 16346;16347 21340;21341 21340 2 KLPVESIQIVLEELRK Unmodified 1893.1299 0.12989855 2515 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 2 9 0 1 74.608 74.608 4 0.00074739 21468 TMT1-8 65.511 39.921 46.602 65.227 47.316 83.462 61.544 76.062 44 65 51 80 65 73 1 1 1 1 1 1 5431.2 10497 2515 10395 16348 21342 21342 1 KLPVGFTFSFPCQQSK Unmodified 1869.9447 0.94474031 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 9 0 2 66.489 66.489 3;4 8.6901E-08 18256 TMT1-8 106.36 85.706 200.11 278.68 216.19 214.01 198.35 395.16 189 278 225 211 212 376 2 2 2 2 2 2 44371 10498 787 10396 16349;16350 21343;21344 21343 2 KLQAQMK Oxidation (M) 861.47422 0.47422274 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 1 0 1 9 0 1 34.767 34.767 3 0.045066 6209 TMT1-8 45.718 19.779 293.01 341.22 237.91 238.93 257.12 356.17 276 343 250 236 268 341 3 3 3 3 3 3 8330.6 10499 1019;1020;1029 10397 16351 21345;21346;21347 21345 184 3 KLQAQMK Unmodified 845.47931 0.47930812 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 0 0 1 9 0 1 36.655 36.655 3 0.0095266 6982 TMT1-8 107.43 46.468 905.25 1173.7 1049.2 704.51 1000.8 1439.3 855 1177 1068 719 1035 1377 2 2 2 2 2 2 127930 10500 1019;1020;1029 10397 16352 21348;21349 21349 2 KLQATVQELQK Unmodified 1284.7402 0.74015049 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 6 2.92 1 1 2 48.689 48.689 3;4 7.5552E-08 12931 TMT1-7 152.23 99.389 2615.6 4709.4 2932.4 2854.7 3620.5 4367.5 2476 4638 3101 2834 3730 4194 5 5 5 5 5 5 499570 10501 971 10398 16353;16354;16355;16356 21350;21351;21352;21353;21354 21352 5 KLQATVQELQKR Unmodified 1440.8413 0.84126152 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 2 9 0 1 43.884 43.884 4 0.0094094 9451 TMT1-8 65.895 42.868 129.74 247.02 166.69 137.06 204.2 175.39 123 243 174 138 207 170 1 1 1 1 1 1 8346.6 10502 971 10399 16357 21355 21355 1 KLQELELLQEAQR Unmodified 1596.8835 0.88352026 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 1 6 0 1 57.209 57.209 3 0.0014885 16982 TMT1-5 76.358 54.686 99.798 122.89 74.76 88.079 135.93 127.24 94 123 80 87 138 123 1 1 1 1 1 1 11822 10503 2651 10400 16358 21356 21356 1 KLQFSLK Unmodified 862.52764 0.52763852 806 P20290-2;P20290 BTF3 Transcription factor BTF3 yes no 0 0 0 0 1 9 0 1 51.215 51.215 3 0.023493 12270 TMT1-8 61.679 17.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10504 806 10401 16359 21357 21357 1 KLQHDVLK Unmodified 979.58147 0.581465 2506 Q9BPX6-5;Q9BPX6-4;Q9BPX6-2;Q9BPX6;Q9BPX6-3 MICU1 Calcium uptake protein 1, mitochondrial yes no 0 0 0 0 1 8 0 1 35.412 35.412 4 0.015167 7832 TMT1-7 65.06 36.892 231.64 234.55 183.48 202.49 158.8 252.37 218 238 192 198 169 241 1 1 1 1 1 1 5999.8 10505 2506 10402 16360 21358 21358 1 KLQIGVK Unmodified 784.51707 0.51707383 905 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 1 9 0 1 44.014 44.014 3 0.018099 9442 TMT1-8 91.626 19.757 425.78 590.72 434.36 311.35 491.63 527.5 402 589 449 317 501 508 1 1 1 1 1 1 32555 10506 905 10403 16361 21359 21359 1 KLQLELNQER Unmodified 1269.7041 0.70409934 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 1 7 0 1 45.254 45.254 3 0.021101 11605 TMT1-6 61.375 32.076 130.51 119.63 145.96 69.547 82.03 168.22 123 123 145 73 87 160 1 1 1 1 1 1 15909 10507 1708 10404 16362 21360 21360 1 KLSAECAK Unmodified 905.46405 0.46405199 710 P14735;P14735-2 IDE Insulin-degrading enzyme yes no 0 0 0 0 1 7 0 1 34.621 34.621 3 0.0090064 7449 TMT1-6 47.96 23.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10508 710 10405 16363 21361 21361 1 KLSELLR Unmodified 857.53345 0.53345218 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 9 0 1 47.942 47.942 3 0.016111 10887 TMT1-8 93.195 5.4412 267.37 550.88 401.87 286.34 355.22 390.68 254 541 415 290 365 376 1 1 1 1 1 1 43894 10509 545 10406 16364 21362 21362 1 KLSSAMSAAK Unmodified 992.53247 0.5324659 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 1 9 0 2 40.304 40.304 2;3 0.00070969 8205 TMT1-8 107.09 47.739 671.11 772.69 525.54 590.52 701.48 957.51 632 777 556 581 728 917 2 2 2 2 2 2 39940 10510 1074 10407 16365;16366 21363;21364 21363 2 KLSTIALALGVER Unmodified 1369.8293 0.82929985 956 P30153;P30154-4;P30154;P30154-2;P30154-5 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 1 9 0 1 63.635 63.635 3 0.0073401 17124 TMT1-8 63.682 34.955 99.245 152.66 142.41 108.28 125.81 181.89 94 152 145 109 131 174 1 1 1 1 1 1 12642 10511 956 10408 16367 21365 21365 1 KLSVEEFFMDLHNFR Unmodified 1910.9349 0.93490391 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 8.5 0.5 1 1 72.655 72.655 4 1.8041E-06 22587 TMT1-7 102.39 84.901 238.59 297.23 224.31 196.63 224.85 469.02 225 298 233 196 239 446 3 3 3 3 3 3 37588 10512 228 10409 16368;16369 21366;21367;21368 21367 3 KLTELGTVDPK Unmodified 1199.6762 0.67615325 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 7 0 1 49.171 49.171 3 0.0067559 13239 TMT1-6 70.963 25.826 138.85 173.43 140.33 122.55 187.45 134.3 131 174 145 123 189 131 1 1 1 1 1 1 29422 10513 1139 10410 16370 21369 21369 1 KLTPITYPQGLAMAK Oxidation (M) 1646.9066 0.90656389 1466 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 1 0 1 9 0 1 54.78 54.78 3 0.0011174 13655 TMT1-8 58.972 41.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10514 1466 10411 16371 21370 21370 236 1 KLTPQGQR Unmodified 926.52976 0.52976379 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 1 8.5 0.5 1 1 27.405 27.405 3 0.0098817 4471 TMT1-8 83.623 45.463 128.09 170.82 148.83 130.62 138.08 160.22 121 171 153 130 143 154 2 2 2 2 2 2 12835 10515 1060 10412 16372;16373 21371;21372 21372 2 KLTSELDK 2 Phospho (STY) 1092.4505 0.45052251 1986 Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-2;Q5VT25-6 CDC42BPA Serine/threonine-protein kinase MRCK alpha yes no 0 0 0 2 1 9 0 1 76.511 76.511 3 0.018384 22195 TMT1-8 64.091 13.182 46.607 42.576 65.614 43.25 49.541 52.952 44 44 65 44 51 51 1 1 1 1 1 1 14151 10516 1986 10413 16374 21373 21373 8;18 1 KLTVNPGTK Unmodified 956.56548 0.56548059 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 9 0 1 39 39 3 0.022193 7770 TMT1-8 68.525 44.006 138.69 211.82 135.5 179.24 152.65 188.59 131 210 145 174 160 181 1 1 1 1 1 1 7845.2 10517 606 10414 16375 21374 21374 1 KLVAIVDPHIK Unmodified 1231.7652 0.76524303 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 9 0 1 51.123 51.123 4 0.00055093 12239 TMT1-8 80.596 52.197 640.18 1054.3 796.31 645.82 854.95 1013.9 606 1044 824 649 879 974 1 1 1 1 1 1 39392 10518 1792 10415 16376 21375 21375 1 KLVDYDSAR Unmodified 1065.5455 0.54547343 2849;76 Q9UBW5;Q9UBW5-3;Q9UBW5-2;P49418-2;P49418;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN2;AMPH;BIN1 Bridging integrator 2;Amphiphysin;Myc box-dependent-interacting protein 1 no no 0 0 0 0 1 5.5 0.5 1 1 38.144 38.144 2;3 0.00067126 9327 TMT1-4 105.4 78.647 335.52 480.87 368.7 316.2 383.72 495.4 317 479 382 316 397 475 2 2 2 2 2 2 27164 10519 2849;76 10416 16377;16378 21376;21377 21376 2 KLVEALCAAGHR Unmodified 1323.7081 0.70813886 871 P23919-2;P23919 DTYMK Thymidylate kinase yes no 0 0 0 0 1 9 0 1 44.464 44.464 4 0.0087762 9627 TMT1-8 53.034 24.828 130.67 136.28 103.84 118.23 126.15 158.43 123 138 109 116 131 152 1 1 1 1 1 1 8692.3 10520 871 10417 16379 21378 21378 1 KLVEESR Unmodified 859.47633 0.47633123 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 0 0 1 5.5 0.5 1 1 30.462 30.462 3 0.0018426 6463 TMT1-5 76.605 32.87 433.55 549.91 425.62 464.54 394 607.04 409 551 445 455 417 580 2 2 2 2 2 2 65992 10521 1851 10418 16380;16381 21379;21380;21381 21381 3 KLVEGLSALVVDVK Unmodified 1468.8865 0.88648038 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 1 8.67 0.471 1 2 72.427 72.427 3;4 3.7095E-12 20605 TMT1-8 131.4 98.397 415.1 585.1 431.82 401.31 481.53 457.43 392 583 450 399 493 442 4 4 4 4 4 4 42948 10522 800 10419 16382;16383;16384 21382;21383;21384;21385 21383 4 KLVESLPQEIK Unmodified 1282.7497 0.74965254 1276 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 0 1 7 0 1 53.118 53.118 3 5.8603E-05 14778 TMT1-6 109 35.562 138.19 224.46 209.25 158.39 213.68 266.8 131 223 213 160 220 256 1 1 1 1 1 1 21169 10523 1276 10420 16385 21386 21386 1 KLVIIEGDLER Unmodified 1283.7449 0.74490152 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 7 1 1 1 54.925 54.925 3 4.1065E-06 16071 TMT1-5 123.75 102.88 5112.1 7122.6 6354.8 4446.4 6359.9 7083.3 4833 7118 6475 4524 6508 6815 5 5 5 5 5 5 530900 10524 519;520;521;518 10421 16386;16387 21387;21388;21389;21390;21391 21388 5 KLVIIESDLER Unmodified 1313.7555 0.7554662 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 1 3.5 2.5 1 1 56.32 56.32 3 2.3198E-05 16428 TMT1-5 114.56 78.563 1739 2272.8 2271.3 1570.8 2497.3 2149.2 1644 2282 2298 1604 2527 2083 3 3 3 3 3 3 392010 10525 592;593;594;595 10422 16388;16389 21392;21393;21394 21394 3 KLVILEGELER Unmodified 1297.7606 0.76055158 1486;1487;551;552 P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 5.5 2.06 1 3 2 57.965 57.965 2;3 3.5102E-06 17019 TMT1-5 131.83 83.186 5460.2 16542 7308.5 6210.6 8504.7 8546.5 5207 16008 7953 6227 8684 8245 9 9 9 9 9 9 1266100 + 10526 1486;1487;551;552 10423 16390;16391;16392;16393;16394;16395 21395;21396;21397;21398;21399;21400;21401;21402;21403 21397 9 KLVIPSELGYGER Unmodified 1459.8035 0.80347903 905 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 1 7 0 1 54.924 54.924 3 0.010504 15529 TMT1-6 60.861 46.626 108.53 91.406 77.28 72.924 120.12 151.14 102 94 80 73 123 145 1 1 1 1 1 1 34355 10527 905 10424 16396 21404 21404 1 KLVIVGDGACGK Unmodified 1215.6645 0.66454271 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 1 8.5 0.5 1 1 47.334 47.334 3 8.0066E-08 12517 TMT1-7 126.1 91.21 334.59 715.91 505.82 467.7 610.9 622.17 318 702 528 466 625 600 2 2 2 2 2 2 60251 10528 1393;556 10425 16397;16398 21405;21406 21405 2 KLVPLLLEDGGEAPAALEAALEEK Unmodified 2475.3472 0.34722112 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 6 0 1 84.496 84.496 4 6.3375E-08 27653 TMT1-5 78.758 70.861 38.166 51.115 34.401 29.003 34.234 60.851 36 51 36 29 36 58 1 1 1 1 1 1 7076.6 10529 1763 10426 16399 21407 21407 1 KLVSIVHGCR Unmodified 1167.6546 0.65464672 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 9 0 1 37.927 37.927 4 0.043977 7358 TMT1-8 35.33 19.186 46.252 119.3 60.328 58.614 62.98 67.493 44 116 65 58 65 65 1 1 1 1 1 1 6378.9 10530 2525 10427 16400 21408 21408 1 KLVWVPSDK Unmodified 1070.6124 0.61243078 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 6.33 3.77 1 2 53.131 53.131 2;3 0.0098045 13117 TMT 1-phospho 73.499 42.936 4282 5924.4 5131.9 4045.8 5266.8 6551.7 4047 5920 5258 4072 5428 6287 3 3 3 3 3 3 673050 10531 1019 10428 16401;16402;16403 21409;21410;21411 21409 3 KLWDISEVMVGLLK Unmodified 1629.9164 0.9164003 2680 Q9HBH5 RDH14 Retinol dehydrogenase 14 yes yes 0 0 0 0 1 9 0 1 89.586 89.586 3 0.0011991 27280 TMT1-8 63.76 42.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10532 2680 10429 16404 21412 21412 1 KLYCIYVAIGQK Unmodified 1454.7956 0.79555688 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 9 0 1 62.957 62.957 3 4.6269E-07 16928 TMT1-8 120.96 104.43 161.67 165.11 100.2 157.43 145.5 182.4 152 167 109 152 152 175 1 1 1 1 1 1 10406 10533 888 10430 16405 21413 21413 1 KLYELIITR Unmodified 1147.6965 0.69649476 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 9 0 1 59.375 59.375 3 0.012411 15480 TMT1-8 79.82 52.517 292.37 459.41 426.01 277.73 445.71 356.12 277 457 432 285 450 346 1 1 1 1 1 1 31476 10534 536 10431 16406 21414 21414 1 KLYGPLCGYYLGR Unmodified 1558.7966 0.79661951 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 1 9 0 1 57.852 57.852 3 0.027487 14844 TMT1-8 55.604 37.508 115.18 191.05 136.51 187.13 136.29 197.58 109 189 145 181 145 189 1 1 1 1 1 1 30367 10535 876 10432 16407 21415 21415 1 KMEDSVGCLETAEEVK Unmodified 1823.8281 0.82811515 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4 0 1 52.653 52.653 3 2.4395E-06 15293 TMT1-3 93.39 62.157 176.1 247.89 309.29 159.99 218.29 282.66 167 249 307 167 225 271 2 2 2 2 2 2 56184 10536 1019 10433 16408 21416;21417 21416 2 KMEDSVGCLETAEEVK Oxidation (M) 1839.823 0.82302978 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 1 4 0 1 47.243 47.243 3 3.5288E-05 13188 TMT1-3 66.913 42.872 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10537 1019 10433 16409 21418 21418 185 1 KMESDFEQK Unmodified 1140.5121 0.51212439 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 5 0 1 40.451 40.451 3 0.010142 10271 TMT1-4 73.067 42.195 193.76 241.62 231.5 188.18 244.48 335.21 183 243 236 189 253 321 1 1 1 1 1 1 29745 10538 228 10434 16410 21419 21419 1 KMLEEIMK Unmodified 1020.5348 0.53477409 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 7 0 2 55.35 55.35 2;3 0.0015371 15671 TMT1-6 121.73 65.475 1307.6 1874.2 1189.6 1153.6 1143.7 3317.8 1234 1863 1257 1140 1253 3143 2 2 2 2 2 2 112440 10539 439 10435 16411;16412 21420;21421 21421 2 KMMFMGFIR 2 Oxidation (M) 1191.5603 0.56027733 2519 Q9BRX8-2;Q9BRX8 FAM213A Redox-regulatory protein FAM213A yes no 0 0 2 0 1 4 0 1 71.981 71.981 2 0.0010048 22910 TMT1-3 67.757 25.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10540 2519 10436 16413 21422 21422 298;299 1 KMPLLLIDGK Unmodified 1126.6784 0.67840186 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 9 0 1 62.4 62.4 3 0.0052165 16705 TMT1-8 85.288 40.979 267.7 318.31 182.52 155.81 319.36 360.79 252 319 194 158 324 347 1 1 1 1 1 1 26514 10541 1669 10437 16414 21423 21423 1 KMPSLGWLR Unmodified 1086.6008 0.60082024 1662 Q12982;Q12982-2 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 yes no 0 0 0 0 1 9 0 1 56.556 56.556 3 0.032452 14360 TMT1-8 50.297 11.514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10542 1662 10438 16415 21424 21424 1 KMQELLQTQDFSK Unmodified 1594.8025 0.80249275 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 8 0 1 57.034 57.034 3 0.012695 16341 TMT1-7 58.885 33.019 108.16 130.34 104.97 103.37 98.855 89.921 102 131 109 102 102 87 1 1 1 1 1 1 17820 10543 2654 10439 16416 21425 21425 1 KMQPDQQVVINCAIVR Unmodified 1897.9866 0.9866219 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 7.5 0.5 1 1 49.987 49.987 3 2.5866E-16 13559 TMT1-7 140.03 122.53 254.88 265.36 219.63 172.83 226.59 267.5 240 269 226 174 233 257 3 3 3 3 3 3 58676 10544 1225 10440 16417;16418 21426;21427;21428 21427 3 KMQQNIQELEEQLEEEESAR Oxidation (M) 2476.1388 0.13876127 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 1 3 0 2 59.089 59.089 3;4 3.7836E-07 18782 TMT1-2 86.727 77.163 61.584 72.724 47.555 66.304 101.37 66.397 58 73 51 65 102 65 2 2 2 2 2 2 17122 10545 1019 10441 16419;16420 21429;21430 21429 186 2 KMQQNIQELEEQLEEEESAR Unmodified 2460.1438 0.14384664 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3.5 0.5 2 2 66.578 66.578 3;4 2.5495E-25 21856 TMT1-2 141.97 138.84 200.48 254.91 172.74 176.9 217.08 295.48 189 255 182 175 225 283 4 4 4 4 4 4 56033 10546 1019 10441 16421;16422;16423;16424 21431;21432;21433;21434;21435;21436 21433 6 KMYEEFLSK Unmodified 1173.574 0.57399637 635 P10644;P10644-2;P31321 PRKAR1A;PRKAR1B cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit yes no 0 0 0 0 1 7 0 1 55.497 55.497 3 0.0058634 15679 TMT1-6 78.548 47.72 153.92 182.24 125.16 109.33 124.62 214.97 145 183 131 109 131 205 1 1 1 1 1 1 15815 10547 635 10442 16425 21437 21437 1 KNAAHAIQK Unmodified 979.55631 0.55631289 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 1 8 0 1 28.788 28.788 4 0.010836 5347 TMT1-7 64.091 39.299 138.75 165.6 163.56 145.78 157.38 95.713 131 167 167 145 160 94 1 1 1 1 1 1 5996.7 10548 51 10443 16426 21438 21438 1 KNFESLSEAFSVASAAAVLSHNR Unmodified 2434.2241 0.2240863 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 1 9 0 1 69.542 69.542 4 2.98E-26 19519 TMT1-8 120.64 103.71 92.238 91.972 109.15 62.976 83.138 144.74 87 94 109 65 87 138 1 1 1 1 1 1 15885 10549 479 10444 16427 21439 21439 1 KNGAYGTPQK Unmodified 1062.5458 0.54580778 2139 Q8IWA5-3 SLC44A2 Choline transporter-like protein 2 yes yes 0 0 0 0 1 6 0 1 34.078 34.078 3 0.025451 7840 TMT1-5 58.889 31.147 68.445 124.37 113.14 102.49 119.82 120.24 65 123 116 102 123 116 1 1 1 1 1 1 4261.1 10550 2139 10445 16428 21440 21440 1 KNICQFLVEIGLAK Unmodified 1631.9069 0.90689824 1086 P41567 EIF1 Eukaryotic translation initiation factor 1 yes yes 0 0 0 0 1 9 0 1 77.71 77.71 3 0.0001552 22695 TMT1-8 74.678 46.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10551 1086 10446 16429 21441 21441 1 KNIILEEGK Unmodified 1042.6023 0.60226003 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 7 0 1 45.984 45.984 3 0.01382 11912 TMT1-6 68.355 15.63 145.35 229.46 262.81 162.87 212.46 205.01 138 229 263 167 217 198 1 1 1 1 1 1 9329.2 10552 865 10447 16430 21442 21442 1 KNILDSKPTANK Unmodified 1327.746 0.74596415 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 2 9 0 1 41.438 41.438 4 6.6588E-05 8581 TMT1-8 97.463 75.521 216.29 269.19 209.52 253.2 169.62 387.45 204 270 220 246 186 368 1 1 1 1 1 1 9725.9 10553 2913 10448 16431 21443 21443 1 KNIPEGSHQYELLK Unmodified 1654.8679 0.8678702 2083 Q9H8S9;Q7L9L4;Q7L9L4-2;Q9H8S9-2 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B yes no 0 0 0 0 1 6 0 1 43.869 43.869 4 2.2927E-07 11728 TMT1-5 105.46 74.04 249.69 347.34 300.91 181.49 206.2 332.04 236 347 306 186 216 317 1 1 1 1 1 1 24532 10554 2083 10449 16432 21444 21444 1 KNIQDSVPK Unmodified 1027.5662 0.56620887 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 7 0 1 38.773 38.773 3 0.0016735 9099 TMT1-6 97.456 56.469 218.2 464.11 444.12 261.99 295.45 488.33 208 457 448 269 310 466 1 1 1 1 1 1 18301 10555 68 10450 16433 21445 21445 1 KNLALLEEAK Unmodified 1127.655 0.65502388 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7 MRVI1 Protein MRVI1 yes no 0 0 0 0 1 7 0 1 51.014 51.014 3 0.000778 13911 TMT1-6 99.215 53.856 77.27 101.79 91.662 79.688 121.68 96.732 73 102 94 80 123 94 1 1 1 1 1 1 7400 10556 3056 10451 16434 21446 21446 1 KNLQYYDISAK Unmodified 1341.6929 0.69286595 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 1 8 0 1 48.246 48.246 3 7.988E-05 12906 TMT1-7 105.65 80.287 200.47 277.54 155.82 161.8 201.86 271.4 189 276 167 160 209 260 1 1 1 1 1 1 18281 10557 1445 10452 16435 21447 21447 1 KNNIDTHAR Unmodified 1067.5472 0.54720476 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 1 6 0 1 23.244 23.244 4 0.039907 3941 TMT1-5 45.997 31.698 23.289 28.803 28.896 14.277 21.059 37.775 22 29 29 15 22 36 1 1 1 1 1 1 643.91 10558 208 10453 16436 21448 21448 1 KNPAAYENDK Unmodified 1148.5462 0.54620171 114 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 0 1 5.5 0.5 1 1 35.09 35.09 3 0.00026346 8227 TMT1-5 105.2 73.141 207.09 322.03 268.57 217.77 239.04 271.4 196 320 276 218 247 261 2 2 2 2 2 2 19987 10559 114 10454 16437;16438 21449;21450 21450 2 KNPGVGNGDDEAAELMQQVNVLK Unmodified 2425.1907 0.19073726 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 1 5 0 2 69.085 69.085 4 1.521E-06 21806 TMT1-4 73.405 54.525 176.81 271.44 170.47 208.19 187.64 257.95 167 269 182 203 197 247 4 4 4 4 4 4 22917 10560 1868 10455 16439;16440 21451;21452;21453;21454 21453 4 KNPQAVLDVLK Unmodified 1223.7238 0.72377215 1680 Q13177;O75914-2;O75914;O75914-4;O75914-3 PAK2;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3 yes no 0 0 0 0 1 8.5 0.5 1 1 57.026 57.026 3 7.315E-09 16356 TMT1-7 158.4 125.79 559.94 1007.4 617.28 632.14 754.73 752.38 530 992 655 625 774 726 2 2 2 2 2 2 60389 10561 1680 10456 16441;16442 21455;21456 21455 2 KNQFNLEDPHQK Unmodified 1496.7372 0.73719038 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 1 6 0 1 38.068 38.068 4 0.0047177 9444 TMT1-5 64.64 45.317 177.28 146.49 196.35 135.59 188.43 149.19 167 152 196 138 191 145 1 1 1 1 1 1 8056.1 10562 322 10457 16443 21457 21457 1 KNQLLLEFSFWNEPVPR Unmodified 2116.1106 0.11056009 263 O75323;O75323-2 GBAS Protein NipSnap homolog 2 yes no 0 0 0 0 1 9 0 2 74.944 74.944 3;4 2.6162E-13 21589 TMT1-8 110.32 98.043 68.128 139.67 153.42 76.418 99.838 97.355 65 138 153 80 102 94 2 2 2 2 2 2 13413 10563 263 10458 16444;16445 21458;21459 21458 2 KNQTLQNEILGHTPR Unmodified 1747.9329 0.93293007 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 1 7 0 1 42.831 42.831 4 0.012961 10667 TMT1-6 50.079 30.685 201.63 232.37 179.92 118.87 257.43 233.57 190 234 185 123 259 226 1 1 1 1 1 1 7305 10564 651 10459 16446 21460 21460 1 KNSVVEASEAAYK Unmodified 1394.7042 0.70415892 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 1 6 0 1 43.183 43.183 3 9.7343E-05 11425 TMT1-5 97.45 70.743 153 278.97 197.98 166.08 247.47 156.04 145 275 206 167 249 153 1 1 1 1 1 1 27998 10565 1588 10460 16447 21461 21461 1 KNWIQYK Unmodified 978.5287 0.52870115 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 9 0 2 46.919 46.919 2;3 0.01476 10522 TMT1-8 94.262 39.857 1283.6 1671.5 1061.2 911.54 1345.2 1825 1210 1669 1117 915 1386 1748 2 2 2 2 2 2 149270 10566 439 10461 16448;16449 21462;21463 21462 2 KPAAAAGAK Unmodified 783.46029 0.46028724 630 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 0 1 8 0 1 29.962 29.962 3 0.009279 5765 TMT1-7 74.173 28.543 259.7 80.728 106.25 124.36 199.47 56.136 243 94 109 123 198 58 1 1 1 1 1 1 23889 10567 630 10462 16450 21464 21464 1 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Unmodified 3270.686 0.68595344 2708 Q9NQC3-2;Q9NQC3 RTN4 Reticulon-4 no no 0 0 0 0 1 8 0 1 73.007 73.007 5 0.0035686 22678 TMT1-7 37.662 32.554 92.399 77.311 94.442 48.528 84.352 128.71 87 80 94 51 87 123 1 1 1 1 1 1 7282.5 10568 2708 10463 16451 21465 21465 1 KPADLQNLAPGTHPPFITFNSEVK Unmodified 2620.3649 0.36493687 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 1 8 0 1 62.079 62.079 4 1.6797E-09 18447 TMT1-7 82.177 69.375 30.634 44.017 43.894 20.612 43.509 45.662 29 44 44 22 44 44 1 1 1 1 1 1 27274 10569 3048 10464 16452 21466 21466 1 KPALVAK Unmodified 725.47996 0.47996005 941;874 P29692;P29692-2;P29692-3;P29692-4;P24534 EEF1D;EEF1B2 Elongation factor 1-delta;Elongation factor 1-beta no no 0 0 0 0 1 9 0 1 39.527 39.527 3 0.024629 7930 TMT1-8 86.472 17.297 734.91 1596.6 1007.9 790.93 1186.2 1134.5 698 1563 1056 799 1206 1096 1 1 1 1 1 1 107830 10570 941;874 10465 16453 21467 21467 1 KPATAAGTK Unmodified 843.48142 0.48141661 744 P16402 HIST1H1D Histone H1.3 yes yes 0 0 0 0 1 8 0 1 29.44 29.44 3 0.025236 5573 TMT1-7 61.233 30.683 254.98 142.42 126.46 122.34 242.49 54.909 239 152 131 123 239 58 1 1 1 1 1 1 14260 10571 744 10466 16454 21468 21468 1 KPDVLLYDTIFQIFNNR Unmodified 2095.1102 0.11022574 1189 P49662-2;P49662;P49662-4;P51878-3;P51878-6;P51878-2;P51878;P51878-5 CASP4;CASP5 Caspase-4;Caspase-4 subunit 1;Caspase-4 subunit 2;Caspase-5;Caspase-5 subunit p20;Caspase-5 subunit p10 yes no 0 0 0 0 1 9 0 1 89.649 89.649 3 4.7763E-07 27305 TMT1-8 76.82 68.111 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10572 1189 10467 16455 21469 21469 1 KPEAQLPAVYPFAAAMYQNELFNLQK Unmodified 2980.5157 0.51570021 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 1 9 0 1 81.445 81.445 4 0.0064648 24117 TMT1-8 36.533 25.695 54.254 42.442 42.807 44.472 56.814 52.745 51 44 44 44 58 51 1 1 1 1 1 1 6105 10573 1723 10468 16456 21470 21470 1 KPEDWDEEMDGEWEPPVIQNPEYK Unmodified 2959.2858 0.28581943 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 4 0 2 68.749 68.749 4;5 1.4602E-07 21606 TMT1-3 77.693 67.546 153.09 264.11 195.61 166.62 226.2 256.85 145 261 203 167 232 247 3 3 3 3 3 3 78653 10574 918 10469 16457;16458 21471;21472;21473 21471 3 KPEENPASK Unmodified 998.50327 0.50327426 866 P23588-2;P23588 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 1 5 0 1 31.541 31.541 3 0.026517 6714 TMT1-4 60.547 38.35 139.3 88.32 137.8 123.8 128.79 74.143 131 94 138 123 131 73 1 1 1 1 1 1 10490 10575 866 10470 16459 21474 21474 1 KPELWSDNFTDFVK Unmodified 1724.841 0.84098675 1665 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 1 7.5 0.5 1 1 68.177 68.177 3 2.621E-07 20730 TMT1-6 109.81 80.795 183.26 343.53 287.82 293.63 328.62 272.05 174 339 298 290 336 264 2 2 2 2 2 2 40803 10576 1665 10471 16460;16461 21475;21476 21475 2 KPENTTR Unmodified 844.44028 0.44028008 2776 Q9NX76 CMTM6 CKLF-like MARVEL transmembrane domain-containing protein 6 yes yes 0 0 0 0 1 6 0 1 22.381 22.381 3 0.0078986 3801 TMT1-5 93.561 34.874 51.161 25.742 35.913 27.757 37.558 26.644 48 28 36 28 38 26 1 1 1 1 1 1 2440 10577 2776 10472 16462 21477 21477 1 KPFNQNK Unmodified 874.4661 0.4661009 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 9 0 1 34.445 34.445 3 0.0060143 6267 TMT1-8 143.02 114.77 203.31 302.17 198.61 212.27 288.57 267.86 192 300 210 210 294 259 1 1 1 1 1 1 18018 10578 570 10473 16463 21478 21478 1 KPFPDFVYK Unmodified 1139.6015 0.60153174 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 1 9 0 1 57.821 57.821 3 0.0079945 14815 TMT1-8 90.685 55.144 297.64 295.62 400.82 310.35 360.49 357.48 281 303 401 312 370 345 1 1 1 1 1 1 47917 10579 1892 10474 16464 21479 21479 1 KPFSQHVR Unmodified 997.54575 0.5457482 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 1 9 0 1 28.37 28.37 4 0.0059486 4600 TMT1-8 64.711 55.056 30.666 63.533 21.952 25.409 32.321 29.992 29 62 25 25 33 29 1 1 1 1 1 1 2494.2 10580 1573 10475 16465 21480 21480 1 KPFVAIMIK Oxidation (M) 1061.6307 0.63072338 1267 P52461 yes yes 0 0 1 0 1 9 0 1 50.076 50.076 3 0.004896 11839 TMT1-8 67.897 11.81 160.64 270.17 184.37 142.67 256.59 226.13 152 267 192 145 259 219 1 1 1 1 1 1 14581 10581 1267 10476 16466 21481 21481 207 1 KPGDLSDELR Unmodified 1128.5775 0.57750184 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 1 5 0 1 42.668 42.668 3 0.047308 11150 TMT1-4 51.013 4.1335 153.44 214.36 179.04 119.72 215.48 296.6 145 214 183 123 221 284 1 1 1 1 1 1 20891 10582 1704 10477 16467 21482 21482 1 KPGGFDISLFYR Unmodified 1398.7296 0.7295858 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 9 0 1 64.171 64.171 3 2.5043E-06 17335 TMT1-8 109.83 80.748 234.58 480 382.37 313.21 383.13 516.74 223 472 394 314 397 495 1 1 1 1 1 1 74685 10583 675 10478 16468 21483 21483 1 KPGINVASDWSIHLR Unmodified 1691.9107 0.91073807 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 9 0 1 54.012 54.012 4 4.4788E-11 13388 TMT1-8 110.84 74.074 355.26 394.39 370.63 265.65 391.72 421.62 335 399 377 270 400 406 3 3 3 3 3 3 30344 10584 1792 10479 16469 21484;21485;21486 21484 3 KPGPGEPLVFGK Unmodified 1224.6867 0.68665836 146 O15382 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial yes yes 0 0 0 0 1 8 0 1 50.785 50.785 3 0.00084106 13892 TMT1-7 84.468 64.63 115.26 159.96 150.25 90.569 171.09 196.59 109 160 152 94 174 189 1 1 1 1 1 1 13790 10585 146 10480 16470 21487 21487 1 KPGSVVAAAAAEAK Unmodified 1268.7089 0.70885036 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 1 7 0 1 46.086 46.086 3 0.0078146 12022 TMT1-6 60.489 40.282 53.971 64.318 71.947 65.288 78.085 75.59 51 65 73 65 80 73 1 1 1 1 1 1 5912.3 10586 1247 10481 16471 21488 21488 1 KPHTESLELQVR Unmodified 1435.7783 0.77832691 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 7.33 0.943 1 2 37.683 37.683 3;4 3.4926E-05 8728 TMT1-7 102.87 81.315 1338.7 1250.1 1355.6 1082 1521.8 1420.2 1261 1281 1373 1090 1549 1373 2 2 2 2 2 2 60231 10587 2525 10482 16472;16473;16474 21489;21490;21491 21490 3 KPHTLLQR Unmodified 991.5927 0.59269839 1209 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 1 9 0 1 31.064 31.064 4 0.037857 5188 TMT1-8 40.002 28.154 30.642 44.04 42.463 52.712 26.621 37.616 29 44 44 51 29 36 1 1 1 1 1 1 2730.9 10588 1209 10483 16475 21492 21492 1 KPIDYTVLDDVGHGVK Unmodified 1754.9203 0.9202997 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 ABI1 Abl interactor 1 yes no 0 0 0 0 1 6 0 2 55.19 55.19 3;4 2.7904E-05 16246 TMT1-5 81.317 53.821 153.42 226.17 172.65 222.92 269.13 271.61 145 225 182 218 276 262 2 2 2 2 2 2 45016 10589 2158 10484 16476;16477 21493;21494 21494 2 KPIGADSK Unmodified 814.45487 0.45486751 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 1 7 0 1 33.819 33.819 3 0.0059359 7129 TMT1-6 53.751 16.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10590 1735 10485 16478 21495 21495 1 KPIPDEHLILK Unmodified 1301.7707 0.77072234 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 1 7 0 1 49.502 49.502 4 0.043661 13276 TMT1-6 42.556 8.1772 168.41 279.21 312.9 158.98 260.42 305.97 160 278 312 167 266 294 1 1 1 1 1 1 28510 10591 336 10486 16479 21496 21496 1 KPLENLGMTDMFR Unmodified 1550.7585 0.75851945 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 1 8 0 1 61.432 61.432 3 0.0002284 18100 TMT1-7 90.367 83.463 84.46 139.23 113.97 62.107 114.09 127.86 80 138 116 65 116 123 1 1 1 1 1 1 8542.3 10592 487 10487 16480 21497 21497 1 KPLFFGEGTVLR Unmodified 1362.766 0.76597131 1207 P49902-2;P49902 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 0 0 0 1 9 0 1 58.719 58.719 3 0.0026777 15199 TMT1-8 77.776 40.929 153.77 188.29 145.83 147.19 138.42 189 145 189 152 145 145 181 1 1 1 1 1 1 11515 10593 1207 10488 16481 21498 21498 1 KPLHYAADCGQLEILEFLLLK Unmodified 2470.3294 0.32940299 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 1 8.5 0.5 2 2 84.367 84.367 4;5 1.683E-19 24942 TMT1-8 115.46 95.388 824.54 1072.6 994.23 699.43 980.16 1194.7 779 1076 1011 711 1007 1147 9 9 9 9 9 9 206810 10594 1347 10489 16482;16483;16484;16485 21499;21500;21501;21502;21503;21504;21505;21506;21507 21504 9 KPLIIFTPK Unmodified 1055.6743 0.67430276 1566 Q02218;Q02218-2;Q9ULD0-3;Q9ULD0-2;Q9ULD0 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 0 0 0 0 1 9 0 1 58.06 58.06 3 0.013515 15021 TMT1-8 76.143 48.036 315.15 485.53 362.92 368.94 387.02 602.97 298 482 379 364 406 576 2 2 2 2 2 2 19221 10595 1566 10490 16486 21508;21509 21509 2 KPLLPYTPGSDVAGVIEAVGDNASAFK Unmodified 2715.4119 0.41194665 1620 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 1 8 0 3 80.478 80.478 3;4;5 5.7917E-07 25588 TMT1-7 55.789 48.596 84.771 92.609 101.17 72.041 91.37 106.12 80 94 102 73 94 102 2 2 2 2 2 2 20978 10596 1620 10491 16487;16488;16489 21510;21511;21512 21512 3 KPLNTEGVMK Unmodified 1115.6009 0.60087982 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 7.5 0.5 1 1 42.543 42.543 3 0.001474 10645 TMT1-7 92.112 66.453 3459.9 4526.9 3825.2 2805.5 3408.3 5221 3267 4534 3918 2834 3553 4989 3 3 3 3 3 3 312010 10597 393 10492 16490;16491 21513;21514;21515 21515 3 KPLPDHVSIVEPK Unmodified 1457.8242 0.82421447 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 1 7 0 1 46.341 46.341 4 0.0016477 12009 TMT1-6 70.68 54.689 795.82 1035.2 803.07 720.8 740.35 991.57 751 1036 833 716 772 950 2 2 2 2 2 2 36667 10598 861 10493 16492 21516;21517 21516 2 KPLSAIIK Unmodified 868.57459 0.57458871 2301 Q92556 ELMO1 Engulfment and cell motility protein 1 yes yes 0 0 0 0 1 9 0 1 49.188 49.188 3 0.015529 11414 TMT1-8 76.465 38.989 314.13 471.73 365.23 433.02 401.35 495.96 297 469 383 423 419 476 2 2 2 2 2 2 11816 10599 2301 10494 16493 21518;21519 21518 2 KPLVIIAEDVDGEALSTLVLNR Unmodified 2364.3264 0.3264261 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 7 0 1 85.248 85.248 4 4.7564E-37 27368 TMT1-6 150.69 143 176.38 292.91 224.52 204.68 203.01 241.52 167 290 233 203 211 232 5 5 5 5 5 5 40244 10600 638 10495 16494 21520;21521;21522;21523;21524 21521 5 KPLVLCGDLNVAHEEIDLR Unmodified 2190.1467 0.1466876 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 1 6 0 1 59.079 59.079 4 1.9226E-35 17732 TMT1-5 155.87 131.09 169.31 266.59 172.97 183.89 193.44 213.01 160 264 183 181 200 205 1 1 1 1 1 1 30182 10601 914 10496 16495 21525 21525 1 KPMVVLGSSALQR Unmodified 1384.7861 0.78605483 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 1 9 0 1 49.478 49.478 3 0.018777 11581 TMT1-8 49.436 27.879 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10602 929 10497 16496 21526 21526 1 KPNEGADGQWK Unmodified 1228.5836 0.58364985 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 1 6 0 1 38.423 38.423 3 0.022908 9554 TMT1-5 57.679 25.181 523.48 798.26 609.66 457.53 880.82 664.57 495 793 629 467 884 647 1 1 1 1 1 1 27988 10603 2207 10498 16497 21527 21527 1 KPPAPDPFAR Unmodified 1094.5873 0.58727866 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 7 0 1 43.505 43.505 3 0.0014431 10949 TMT1-6 92.428 64.807 184.11 297.34 182.98 158.92 268.71 278.02 174 294 193 160 273 268 1 1 1 1 1 1 11955 10604 251 10499 16498 21528 21528 1 KPPLLNNADSVQAK Unmodified 1493.8202 0.82019173 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 8 0 1 46.738 46.738 3 6.876E-08 12311 TMT1-7 115.1 98.221 177.83 159.89 92.842 157.86 145.77 173.86 167 163 102 152 152 167 1 1 1 1 1 1 20025 10605 606 10500 16499 21529 21529 1 KPPPNLFK Unmodified 939.55419 0.55418762 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 1 9 0 1 46.079 46.079 3 0.018057 10191 TMT1-8 73.26 48.405 365.11 559.57 378.46 424.86 386.87 532.62 345 555 400 416 406 510 2 2 2 2 2 2 23670 10606 761 10501 16500 21530;21531 21530 2 KPPPPSAPVIK Unmodified 1129.6859 0.68593008 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 1 9 0 1 42.47 42.47 3 0.003185 8910 TMT1-8 80.871 52.065 122.73 159.34 157.1 131.01 149.13 111.94 116 160 160 131 152 109 1 1 1 1 1 1 11632 10607 2369 10502 16501 21532 21532 1 KPQYDIWGNTVNVSSR Unmodified 1862.9275 0.92751034 166 O43306-2;O43306 ADCY6 Adenylate cyclase type 6 yes no 0 0 0 0 1 8 0 1 52.911 52.911 3 2.9639E-07 14780 TMT1-7 103.16 93.904 77.434 93.606 71.13 41.521 123.94 81.743 73 94 73 44 123 80 1 1 1 1 1 1 13319 10608 166 10503 16502 21533 21533 1 KPSHTSAVSIAGK Unmodified 1281.7041 0.70409934 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 1 9 0 1 34.494 34.494 4 2.0061E-05 6266 TMT1-8 96.059 66.972 37.995 77.623 40.619 48.042 48.258 83.903 36 76 44 47 51 80 1 1 1 1 1 1 3455.9 10609 2687 10504 16503 21534 21534 1 KPVAGALDVSFNK Unmodified 1344.7402 0.74015049 2480 Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 1 8 0 1 53.947 53.947 3 5.5241E-08 15168 TMT1-7 97.417 67.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10610 2480 10505 16504 21535 21535 1 KPVEEYANCHLAR Unmodified 1585.7671 0.7671103 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 6 0 1 36.461 36.461 4 0.00028928 8765 TMT1-5 83.474 52.246 130.33 150.45 148.9 131.98 123.58 215 123 152 152 131 131 205 1 1 1 1 1 1 17141 10611 451 10506 16505 21536 21536 1 KPVEGYDISFLITNFHTEQMYK Unmodified 2659.2992 0.29922507 1351 P59998;P59998-3;P59998-4 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 1 8 0 1 71.578 71.578 5 0.00034335 22072 TMT1-7 53.059 40.505 54.134 49.663 56.877 58.948 56.148 52.764 51 51 58 58 58 51 1 1 1 1 1 1 11880 10612 1351 10507 16506 21537 21537 1 KPVGAAK Unmodified 669.41736 0.41735979 745 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 1 8 0 1 30.682 30.682 3 0.031746 6091 TMT1-7 67.981 20.914 300.56 153.9 210.6 253.17 400.29 97.31 282 167 215 250 397 102 1 1 1 1 1 1 19050 10613 745 10508 16507 21538 21538 1 KPVVDCVVSVPCFYTDAER Unmodified 2240.0606 0.060574706 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 1 7 0 1 62.405 62.405 3 0.00029346 18418 TMT1-6 64.422 57.09 38.117 50.979 42.746 36.178 33.098 84.336 36 51 44 36 36 80 1 1 1 1 1 1 15300 10614 1009 10509 16508 21539 21539 1 KPYCNAHYPK Unmodified 1276.6023 0.6022768 1801 Q14847;Q14847-2;O76041-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 1 8 0 2 33.036 33.036 3;4 0.00039005 6939 TMT1-7 70.977 42.68 601.72 754.89 661.11 615.18 703.81 887.08 568 758 681 611 729 851 2 2 2 2 2 2 106230 10615 1801 10510 16509;16510 21540;21541;21542 21542 3 KPYPDDENLVEVK Unmodified 1544.7722 0.77223848 1324 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 1 4.5 0.5 1 1 50.77 50.77 3 0.00015008 14586 TMT1-3 69.331 25.57 115.65 137.32 102.48 149.06 176.54 172.98 109 138 109 145 181 167 1 1 1 1 1 1 28189 10616 1324 10511 16511;16512 21543;21544 21543 2 KQAGPASVPLR Unmodified 1122.6509 0.65094155 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 8 0 1 35.186 35.186 3 0.00035998 7741 TMT1-7 99.732 71.625 209.15 323.82 280.2 148.25 179.32 245.39 198 322 284 154 186 235 1 1 1 1 1 1 18441 10617 955 10512 16513 21545 21545 1 KQDAFYK Unmodified 898.45487 0.45486751 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 1 7 0 1 39.743 39.743 3 0.019861 9426 TMT1-6 77.318 25.59 258.01 406.47 294.76 263.14 242.75 376.83 244 403 307 261 256 360 1 1 1 1 1 1 23353 10618 2775 10513 16514 21546 21546 1 KQDFPLVK Unmodified 973.55967 0.55966693 1039 P36543;P36543-2;P36543-3 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 1 8 0 1 48.105 48.105 3 0.014877 12820 TMT1-7 75.294 21.611 558.48 580.62 503.31 486.56 604.14 702.31 526 589 520 483 622 675 1 1 1 1 1 1 45650 10619 1039 10514 16515 21547 21547 1 KQDWSDHAIWWEQK Unmodified 1855.8642 0.86418181 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 7.5 0.5 1 1 55.748 55.748 4 3.7452E-08 15754 TMT1-6 115.1 100.64 1122.2 1545.6 1608.3 1328.2 1809.2 1677.4 1062 1549 1632 1334 1843 1622 4 4 4 4 4 4 132280 10620 2112 10515 16516;16517 21548;21549;21550;21551 21548 4 KQEAEWK Unmodified 917.46068 0.46068117 596 P09496-2;P09496-4;P09496-3;P09496;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 1 6 0 1 36.838 36.838 3 0.020674 8899 TMT1-5 76.679 43.128 1054.3 1475.7 1351.8 1042.6 1360.7 1533.5 997 1475 1379 1051 1397 1475 1 1 1 1 1 1 94970 10621 596 10516 16518 21552 21552 1 KQEELQQLEQQR Unmodified 1555.7954 0.79543354 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 42.318 42.318 3 1.3323E-05 11233 TMT1-3 111.31 87.418 107.8 136.89 159.95 99.121 150.6 111.9 102 138 160 102 152 109 1 1 1 1 1 1 16568 10622 1833 10517 16519 21553 21553 1 KQEFLEK Unmodified 920.49673 0.49673232 2645 Q9H444;P59074 CHMP4B;CHMP4BP1 Charged multivesicular body protein 4b;Putative charged multivesicular body protein 4B-like protein CHMP4BP1 yes no 0 0 0 0 1 6 0 1 42.503 42.503 3 0.021411 11182 TMT1-5 76.1 21.695 502.05 659.31 543.25 510.7 646.86 705.36 474 660 562 508 664 679 1 1 1 1 1 1 20708 10623 2645 10518 16520 21554 21554 1 KQEIVAEK Unmodified 943.53385 0.53384611 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 6 0 1 37.245 37.245 2 0.047188 9115 TMT1-5 79.974 15.934 46.438 49.661 88.067 64.056 92.543 82.639 44 51 87 65 94 80 1 1 1 1 1 1 10621 10624 2913 10519 16521 21555 21555 1 KQELEEICHDLEAR Unmodified 1768.8414 0.84139745 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3.17 1.34 1 1 1 2 1 55.769 55.769 3;4 7.9655E-19 16237 TMT1-3 158.29 139.81 7469.5 10388 10248 7457.4 9260.1 10526 7067 10398 10389 7541 9526 10122 15 15 15 15 15 15 1149300 10625 1019 10520 16522;16523;16524;16525;16526;16527 21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570 21565 15 KQELLEALTK Unmodified 1171.6812 0.68123863 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 8 0 1 59.705 59.705 3 0.00080872 17499 TMT1-7 98.902 70.725 669.17 1159.2 705.57 838.1 972.8 1071.3 633 1143 754 822 1002 1031 2 2 2 2 2 2 129880 10626 675 10521 16528 21571;21572 21572 2 KQELQPGTAYK Unmodified 1261.6667 0.6666512 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 1 7 0 1 39.591 39.591 3 0.0042953 9409 TMT1-6 76.073 35.02 53.92 64.177 80.569 41.944 71.573 83.238 51 65 80 44 73 80 1 1 1 1 1 1 6570.1 10627 1248 10522 16529 21573 21573 1 KQELSEAEQATR Unmodified 1388.6896 0.68957148 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 1 4 0 1 37.066 37.066 3 0.0051097 9150 TMT1-3 68.856 40.457 130.05 191.74 162.41 161.72 185.09 242.03 123 191 168 160 192 232 1 1 1 1 1 1 19228 10628 409 10523 16530 21574 21574 1 KQEQLETAR Unmodified 1101.5778 0.57783619 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 1 5 0 1 28.785 28.785 3 0.011347 5635 TMT1-4 71.524 26.642 99.363 145.43 128.72 85.284 113.54 112.95 94 145 131 87 116 109 1 1 1 1 1 1 6122.3 10629 1112 10524 16531 21575 21575 1 KQESSCPSQNLK Unmodified 1404.6667 0.66672755 2221 Q8NEU8-3;Q8NEU8;Q8NEU8-2 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 1 6 0 1 32.525 32.525 3 0.0018022 7243 TMT1-5 77.644 46.005 30.739 51.865 19.535 22.493 20.681 37.786 29 51 22 22 22 36 1 1 1 1 1 1 4756 10630 2221 10525 16532 21576 21576 1 KQEVQAWDGEVR Unmodified 1443.7106 0.71064128 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 1 5 0 1 42.453 42.453 3 0.00057372 11024 TMT1-4 88.224 67.843 207.8 263.58 197.6 140.63 323.4 232.75 196 264 204 145 323 227 1 1 1 1 1 1 22994 10631 1122 10526 16533 21577 21577 1 KQFGAQANVIGPWIQTK Unmodified 1885.021 0.021016799 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 6.33 3.77 1 2 61.482 61.482 3;4 4.7078E-15 16138 TMT1-8 121.32 93.678 1083.1 1153.3 1110.7 958.18 975.21 1449.6 1021 1170 1135 954 1022 1386 3 3 3 3 3 3 174760 10632 672 10527 16534;16535;16536 21578;21579;21580;21581 21580 4 KQFGHPQIEAR Unmodified 1309.6891 0.68911797 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 1 8 0 1 32.269 32.269 4 0.0040056 6658 TMT1-7 69.721 51.409 60.976 133.63 98.145 87.413 97.207 159.26 58 131 102 87 102 152 1 1 1 1 1 1 4920.7 10633 651 10528 16537 21582 21582 1 KQGGLGPMNIPLVSDPK Unmodified 1749.9447 0.94474031 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 1 8.33 0.471 2 1 59.805 59.805 3;4 0.00019923 17470 TMT1-7 73.464 43.776 308.98 345.16 255.94 288.52 294.64 324.18 291 348 269 283 305 312 3 3 3 3 3 3 37705 10634 1606 10529 16538;16539;16540 21583;21584;21585 21583 3 KQGGTLDDLEEQAR Unmodified 1558.7587 0.75871368 112 O14920-4;O14920-2;O14920 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta yes no 0 0 0 0 1 4 0 1 42.229 42.229 3 0.00023438 11205 TMT1-3 63.923 48.039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10635 112 10530 16541 21586 21586 1 KQGLEQFINK Unmodified 1203.6612 0.66117189 223 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 1 8.5 0.5 1 1 51.9 51.9 3 1.8483E-06 12489 TMT1-8 147.28 94.157 645.02 847.07 700.4 502.82 683.87 765.06 609 848 718 510 701 736 3 3 3 3 3 3 53087 10636 223 10531 16542;16543 21587;21588;21589 21589 3 KQGLLPLTFADPADYNK Unmodified 1889.9887 0.98871362 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 66.618 66.618 4 0.00017774 20147 TMT1-7 74.141 56.44 68.561 117.13 99.747 72.82 54.448 83.726 65 116 102 73 58 80 1 1 1 1 1 1 11206 10637 2492 10532 16544 21590 21590 1 KQHSLLK Unmodified 852.51814 0.51813647 1448 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 0 0 1 9 0 1 31.94 31.94 4 0.011256 5462 TMT1-8 65.038 19.901 130.7 151.45 87.352 103.48 148.82 157.79 123 152 94 102 152 152 1 1 1 1 1 1 12141 10638 1448 10533 16545 21591 21591 1 KQKPVLQK Unmodified 967.61785 0.61785051 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 2 9 0 1 35.84 35.84 4 0.041664 6772 TMT1-8 59.8 34.945 99.342 125.94 148.69 100.31 122.9 155.33 94 127 149 102 127 149 1 1 1 1 1 1 4503.5 10639 1566 10534 16546 21592 21592 1 KQLAQIK Unmodified 827.52289 0.52288749 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 9 0 1 39.589 39.589 3 0.0098759 7955 TMT1-8 104.45 30.032 384.64 481.13 409.68 288.91 426.38 447.28 363 483 419 294 435 431 1 1 1 1 1 1 40546 10640 1311 10535 16547 21593 21593 1 KQLNQGEGTIR Unmodified 1242.668 0.66804818 2922 Q9UN19 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes yes 0 0 0 0 1 6 0 1 31.988 31.988 3 0.0022311 7010 TMT1-5 82.774 50.74 77.473 86.16 70.848 57.864 69.521 121.67 73 87 73 58 73 116 1 1 1 1 1 1 5371 10641 2922 10536 16548 21594 21594 1 KQLTALR Unmodified 828.51814 0.51813647 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 9 0 1 36.156 36.156 3 0.044819 6802 TMT1-8 49.813 18.441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10642 2911 10537 16549 21595 21595 1 KQNDVFGEAEQ Unmodified 1263.5731 0.57314474 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 4 0 1 43.776 43.776 2 0.017023 11811 TMT1-3 77.358 77.358 84.686 101.01 108.28 71.198 113.67 127.87 80 102 109 73 116 123 1 1 1 1 1 1 20754 10643 972 10538 16550 21596 21596 1 KQPGQLR Unmodified 825.48209 0.48208531 2290 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 1 8 0 1 26.608 26.608 3 0.013133 4612 TMT1-7 85.359 48.206 169.6 186.45 192.24 174.98 198.89 157.42 160 189 196 174 203 153 2 2 2 2 2 2 10605 10644 2290 10539 16551 21597;21598 21597 2 KQPPVSPGTALVGSQK Unmodified 1592.8886 0.88860564 755 P17096-3;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 0 1 9 0 1 44.952 44.952 3 2.9962E-05 9834 TMT1-8 74.618 51.701 18.848 48.108 37.616 60.227 49.163 41.237 18 47 40 58 51 40 1 1 1 1 1 1 5981.7 10645 755 10540 16552 21599 21599 1 KQPQEAAVWR Unmodified 1211.6411 0.64110515 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 1 7 0 1 37.77 37.77 3 0.003363 8683 TMT1-6 83.226 60.505 192.23 212.18 152.91 146.06 176.17 248.68 181 214 160 145 183 238 1 1 1 1 1 1 12696 10646 2202 10541 16553 21600 21600 1 KQPSNNLDR Unmodified 1070.5469 0.54687041 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 1 6 0 1 25.919 25.919 3 0.012225 4743 TMT1-5 70.399 13.678 69.124 56.102 56.762 51.164 63.579 60.014 65 58 58 51 65 58 1 1 1 1 1 1 6290.3 10647 757 10542 16554 21601 21601 1 KQQDVLGFLEANK Unmodified 1488.7936 0.79364262 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 1 7 0 1 62.588 62.588 3 4.6208E-06 18495 TMT1-6 88.78 20.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10648 269 10543 16555 21602 21602 1 KQQDVVR Unmodified 871.48756 0.48756462 2885 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 0 1 6 0 1 25.803 25.803 3 0.029297 4690 TMT1-5 69.905 16.225 138.96 158.62 134.29 107.88 172.97 118.72 131 160 138 109 174 116 1 1 1 1 1 1 10485 10649 2885 10544 16556 21603 21603 1 KQQISLATQMVR Unmodified 1401.7762 0.77621842 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 1 9 0 1 46.213 46.213 3 5.269E-05 10296 TMT1-8 89.613 57.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10650 1161 10545 16557 21604 21604 1 KQQLAEEEAR Unmodified 1200.6099 0.6098646 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 1 4 0 1 31.521 31.521 3 0.0002126 6943 TMT1-3 110.08 79.508 233.97 309.55 270.08 246.01 301.7 236.57 221 310 278 245 307 230 1 1 1 1 1 1 23954 10651 1916 10546 16558 21605 21605 1 KQQMEMEIAK Oxidation (M) 1250.5999 0.59989354 2457 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 0 1 8 0 1 94.244 94.244 3 0.026844 30690 TMT1-7 52.49 42.151 122.87 159.74 132.51 148.23 125.29 143.53 116 160 138 145 131 138 1 1 1 1 1 1 39470 10652 2457 10547 16559 21606 21606 294 1 KQQTIILDDELIQWK Unmodified 1870.02 0.020013746 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 7 0 1 67.587 67.587 4 0.0002874 20461 TMT1-6 76.548 73.358 145.93 226.75 168.19 128.83 172.25 142.19 138 225 174 130 175 138 2 2 2 2 2 2 10744 10653 1093;1253 10548 16560 21607;21608 21607 2 KQQTLEAEEAK Unmodified 1273.6514 0.65139506 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 1 5 0 1 36.2 36.2 3 0.00057496 8535 TMT1-4 96.059 61.304 177.04 188.99 201.1 141.79 250.18 139.97 167 192 203 145 250 138 1 1 1 1 1 1 19984 10654 1897 10549 16561 21609 21609 1 KQSEGLTK Unmodified 889.4869 0.48689592 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 1 6.5 0.5 1 1 32.544 32.544 3 0.012764 7134 TMT1-5 77.192 61.652 396.88 421.1 386.52 353.85 475.68 295.57 374 427 397 353 480 290 2 2 2 2 2 2 50812 10655 1244 10550 16562;16563 21610;21611 21610 2 KQSEPFFK Unmodified 1009.5233 0.52328142 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 1 8 0 1 44.186 44.186 3 0.013777 11291 TMT1-7 76.282 39.17 1118.1 1409.7 970.19 1091.9 1282.4 1402.5 1054 1411 1025 1074 1320 1350 1 1 1 1 1 1 63917 10656 655 10551 16564 21612 21612 1 KQSLGELIGTLNAAK Unmodified 1541.8777 0.8777066 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 1 9 0 1 64.108 64.108 3 1.4298E-10 17290 TMT1-8 116.35 87.372 495.28 818.58 462.6 528.43 599.1 732.3 468 808 497 519 620 703 2 2 2 2 2 2 122120 10657 1352 10552 16565 21613;21614 21613 2 KQSVEDILK Unmodified 1058.5972 0.59717465 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 1 6 0 1 48.983 48.983 3 0.0068338 13728 TMT1-5 77.305 18.629 312.28 388.51 386.08 271.6 375.14 317.62 295 391 391 276 381 308 1 1 1 1 1 1 29607 10658 1043 10553 16566 21615 21615 1 KQTALVELLK Unmodified 1141.7071 0.70705945 29 CON__P02769 yes yes 0 0 0 0 1 8 0 1 57.761 57.761 3 0.014348 16662 TMT1-7 65.234 28.122 75.395 96.568 411.3 76.779 77.044 90.544 73 102 389 94 80 87 1 1 1 1 1 1 10190 + 10659 29 10554 16567 21616 21616 1 KQTALVELVK Unmodified 1127.6914 0.69140938 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 8 0 2 52.122 52.122 2;3 0.00085536 14418 TMT1-7 112.75 74.456 1213.8 1408.5 1293.6 891.41 1330.8 1662.3 1145 1421 1316 909 1366 1595 2 2 2 2 2 2 426570 + 10660 28 10555 16568;16569 21617;21618 21617 2 KQTHNNAVVK Unmodified 1137.6255 0.62545508 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 8 0 1 25.802 25.802 4 0.00051763 4387 TMT1-7 97.456 65.136 284.83 192.89 296.58 215.48 271.89 201.18 268 204 295 218 276 196 2 2 2 2 2 2 18005 10661 787 10556 16570 21619;21620 21619 2 KQTIDNSQGAYQEAFDISK Unmodified 2142.0229 0.022926872 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 1 6 0 1 54.128 54.128 4 2.8773E-24 15767 TMT1-5 140.95 116.06 114.12 273.35 245.53 130.78 287.98 211.38 109 268 248 138 288 206 1 1 1 1 1 1 24636 10662 909 10557 16571 21621 21621 1 KQTIGNSCK Unmodified 1034.5179 0.51787847 1307 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 1 8 0 1 30.686 30.686 3 0.038249 6048 TMT1-7 54.27 14.268 92.336 92.244 92.485 72.356 102.15 35.461 87 94 94 73 102 36 1 1 1 1 1 1 3471.4 10663 1307 10558 16572 21622 21622 1 KQVAIIEK Unmodified 927.57532 0.57531699 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 1 8 0 1 42.757 42.757 3 0.019268 10713 TMT1-7 71.349 30.998 557.83 812.12 596.65 532.75 584.01 830.81 527 808 621 530 609 795 1 1 1 1 1 1 17530 10664 2630 10559 16573 21623 21623 1 KQVEVDAQQCMLEILDTAGTEQFTAMR Unmodified 3111.4675 0.46750574 1384 P61224 RAP1B Ras-related protein Rap-1b yes yes 0 0 0 0 1 6 0 2 80.507 80.507 3;4 3.9135E-16 26089 TMT1-5 92.412 86.508 78.469 93.428 77.591 66.633 75.657 114.04 74 94 80 66 79 109 3 3 3 2 3 3 32232 10665 1384 10560 16574;16575 21624;21625;21626 21624 3 KQVEVFR Unmodified 904.51305 0.51305109 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 1 7 0 1 38.085 38.085 3 0.033908 8771 TMT1-6 66.429 18.514 255.91 316.98 182.85 200.18 167.64 272.38 241 317 196 196 178 260 1 1 1 1 1 1 68249 10666 2907 10561 16576 21627 21627 1 KQVVLEEGTIAFK Unmodified 1460.8239 0.82388012 749 P16671;P16671-3;P16671-4;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 1 7.5 0.5 1 1 57.564 57.564 3;4 8.691E-05 16596 TMT1-7 98.312 59.046 268.86 358.59 314.63 341.88 351.5 333.22 254 359 326 336 362 322 2 2 2 2 2 2 27393 10667 749 10562 16577;16578 21628;21629 21629 2 KQYDSFTFTASK Unmodified 1421.6827 0.68269519 2126 Q86XR7-2;Q9Y3B3-2;Q9Y3B3 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 1 8 0 1 50.421 50.421 3 4.5232E-06 13787 TMT1-7 115.12 87.47 145.8 202.65 209.71 103.55 164.23 165.87 138 203 210 109 167 160 1 1 1 1 1 1 19606 10668 2126 10563 16579 21630 21630 1 KSADDFIDK Unmodified 1037.5029 0.50293991 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 1 5 0 1 45.933 45.933 3 0.01169 12371 TMT1-4 71.085 15.535 130.06 180.97 169.93 153.22 148.08 173.8 123 181 174 152 154 167 1 1 1 1 1 1 11279 10669 2963 10564 16580 21631 21631 1 KSADTLWGIQK Unmodified 1245.6717 0.67173657 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 8.5 0.5 1 1 52.059 52.059 3;4 0.0048179 14510 TMT1-7 74.987 24.091 291.37 386.11 296.21 205.71 328.05 345.62 275 386 305 210 334 333 2 2 2 2 2 2 26244 10670 385 10565 16581;16582 21632;21633 21632 2 KSAEFLLHMLK Unmodified 1315.7322 0.73222834 781 P18621-3;P18621;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 1 9 0 1 61.678 61.678 4 0.00066411 16336 TMT1-8 78.908 47.065 153.28 240.91 182.51 151.84 181.61 234.67 145 239 189 152 188 225 2 2 2 2 2 2 18687 10671 781 10566 16583 21634;21635 21634 2 KSAPATGGVK Unmodified 914.51853 0.5185304 1496;2067 P68431;Q16695;Q71DI3 HIST1H3A;HIST3H3;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.2 no no 0 0 0 0 1 8 0 2 31.19 31.19 3;4 0.00016413 6248 TMT1-7 114.72 70.083 1569.7 942.41 1196.4 1256.4 1817.6 796.67 1474 1004 1217 1246 1819 796 3 3 3 3 3 3 74045 10672 1496;2067 10567 16584;16585 21636;21637;21638 21636 3 KSAPSTGGVK Unmodified 930.51345 0.51344502 1525 P84243 H3F3A Histone H3.3 yes yes 0 0 0 0 1 8 0 1 31.01 31.01 3 0.0013711 6144 TMT1-7 93.162 31.585 526.93 297.18 273.93 386.09 571.08 185.18 494 317 288 378 569 189 2 2 2 2 2 2 45781 10673 1525 10568 16586 21639;21640 21639 2 KSASDLTWDNLK Unmodified 1376.6936 0.69359423 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 7 0 1 52.991 52.991 3 0.0010024 14697 TMT1-6 82.202 50.974 177.06 236.52 158.05 169.61 186.2 320.88 167 236 167 167 196 306 1 1 1 1 1 1 13516 10674 451 10569 16587 21641 21641 1 KSCHTAVGR Unmodified 1014.5029 0.50289711 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 8 0 1 20.613 20.613 4 0.037116 3434 TMT1-7 47.187 7.5647 10.633 8.711 8.8553 6.8794 12.965 9.224 10 9 9 7 13 9 1 1 1 1 1 1 369.78 10675 451 10570 16588 21642 21642 1 KSDGIYIINLK Unmodified 1262.7234 0.72343779 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 1 8 0 1 58.182 58.182 4 0.0016525 16840 TMT1-7 78.692 44.806 145.9 213.72 183.83 159.7 224.76 155.62 138 213 189 160 227 152 1 1 1 1 1 1 12035 10676 579 10571 16589 21643 21643 1 KSDIDEIVLVGGSTR Unmodified 1587.8468 0.84680041 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5.5 0.5 1 1 55.276 55.276 3 4.4265E-06 16066 TMT1-4 101.67 96.198 898.59 1346.4 1121.1 898.16 995.46 1427.8 850 1340 1152 900 1038 1366 4 4 4 4 4 4 207450 10677 640 10572 16590;16591 21644;21645;21646;21647 21644 4 KSDLFQDDLYPDTAGPEAALEAEEWFEGK Unmodified 3270.4881 0.48808429 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 5 0.707 1 2 1 84.95 84.95 4;5 1.8534E-24 27689 TMT1-4 113.91 98.931 393.54 482.68 535.23 382.09 420.59 491.15 372 487 539 386 435 472 7 7 7 7 7 7 152840 10678 2913 10573 16592;16593;16594;16595 21648;21649;21650;21651;21652;21653;21654 21650 7 KSDLFQDDLYPDTAGPEAALEAEEWVSGR Unmodified 3208.4837 0.48366762 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 1 5 0 1 79.438 79.438 4 9.8031E-09 25610 TMT1-4 72.103 63.708 54.149 64.815 41.493 43.846 94.279 59.138 51 65 44 44 94 58 2 2 2 2 2 2 17013 10679 2512 10574 16596 21655;21656 21656 2 KSDLFQEDLYPPTAGPDPALTAEEWLGGR Unmodified 3172.5353 0.53530926 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 6 0.632 1 3 1 80.532 80.532 3;4;5 1.4985E-18 26130 TMT1-5 100.95 85.172 912.61 1167.2 900.16 900.73 803.48 1288.3 861 1169 938 887 850 1230 8 8 8 8 8 8 681080 10680 971 10575 16597;16598;16599;16600;16601 21657;21658;21659;21660;21661;21662;21663;21664 21662 8 KSDVEAIFSK Unmodified 1122.5921 0.59208927 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 1 7 0 1 54.575 54.575 2 0.0010922 15352 TMT1-6 107.85 35.299 68.786 110.21 67.706 97.01 90.222 106.16 65 109 73 94 94 102 1 1 1 1 1 1 17478 10681 547 10576 16602 21665 21665 1 KSEAPFTHK Unmodified 1043.54 0.53999412 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 1 7 0 1 33.518 33.518 4 0.042602 7018 TMT1-6 44.847 14.019 485.83 705.39 524.95 521.18 496.35 809.85 459 702 548 514 524 773 1 1 1 1 1 1 20533 10682 1635 10577 16603 21666 21666 1 KSEEENLFEIITADEVHYFLQAATPK Unmodified 3021.4971 0.49713284 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 7.12 1.05 3 2 2 1 89.117 89.117 4;5 2.0287E-16 28927 TMT1-6 100.29 88.7 2029.3 2352.8 2105.5 1704.7 2066.7 2629.5 1914 2373 2156 1710 2137 2522 18 18 18 18 18 18 445720 10683 567 10578 16604;16605;16606;16607;16608;16609;16610;16611 21667;21668;21669;21670;21671;21672;21673;21674;21675;21676;21677;21678;21679;21680;21681;21682;21683;21684 21677 18 KSEIEYYAMLAK Unmodified 1444.7272 0.72720254 1455 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 1 7 0 2 60.922 60.922 3;4 8.9176E-08 17869 TMT1-6 125.61 105.51 260.96 405.5 340.75 251.89 288.23 407.52 247 403 349 254 300 390 2 2 2 2 2 2 24403 10684 1455 10579 16612;16613 21685;21686 21686 2 KSESFSNLLEITLLVGNYMNAGSR Unmodified 2642.3374 0.33740149 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 9 0 1 89.542 89.542 4 0.0080647 27250 TMT1-8 38.146 18.071 7.1979 37.47 20.869 14.608 28.886 22.628 7 36 22 15 29 22 1 1 1 1 1 1 2464.1 10685 228 10580 16614 21687 21687 1 KSFKPDFGAESIYGGFLLGVR Unmodified 2287.2001 0.20010338 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 2 9 0 1 70.517 70.517 4 1.6222E-12 19879 TMT1-8 88.755 65.853 77.645 71.527 54.374 83.046 61.306 83.531 73 73 58 80 65 80 1 1 1 1 1 1 6250.8 10686 1021 10581 16615 21688 21688 1 KSGKPGPFLLSGSR Unmodified 1429.8041 0.80414773 1107 P43034;Q5IS43 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 2 9 0 1 42.652 42.652 4 0.013003 8981 TMT1-8 56.514 33.288 130.77 105.24 114.66 87.02 65.799 191.07 123 109 116 87 73 181 1 1 1 1 1 1 5876.4 10687 1107 10582 16616 21689 21689 1 KSGVGNIFVK Phospho (STY) 1127.574 0.57401016 2634 Q9H361 PABPC3 Polyadenylate-binding protein 3 yes yes 0 0 0 1 1 9 0 1 108.66 108.66 2 0.020905 33715 TMT1-8 51.727 11.295 7.3906 11.024 10.891 7.0019 0 7.462 7 11 11 7 0 7 1 1 1 1 0 1 2093.6 10688 2634 10583 16617 21690 21690 13 1 KSHHANSPTAGAAK Unmodified 1375.6957 0.69565991 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 1 8 0 1 23.408 23.408 4 0.0018006 3798 TMT1-7 65.704 17.079 15.825 16.496 31.399 24.096 14.048 15.589 15 17 31 24 15 15 1 1 1 1 1 1 2564.5 10689 1862 10584 16618 21691 21691 1 KSLITFVNK Unmodified 1048.6281 0.62808085 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 1 9 0 1 54 54 3 0.002515 13340 TMT1-8 105.46 61.111 218.15 236.95 284.75 137.78 198.44 220.33 206 241 283 145 203 212 1 1 1 1 1 1 21181 10690 2682 10585 16619 21692 21692 1 KSLSDSESDDSK Unmodified 1296.5681 0.56811894 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 1 4 0 1 34.325 34.325 3 0.041007 8090 TMT1-3 50.088 16.863 37.889 81.645 55.035 59.068 55.63 67.703 36 80 58 58 58 65 1 1 1 1 1 1 4169.8 10691 1681 10586 16620 21693 21693 1 KSNFAEALAAHK Unmodified 1285.6779 0.67788459 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 8 0 1 43.82 43.82 4 0.0022293 11150 TMT1-7 71.558 49.024 676.66 956.83 880.7 651.75 736.94 939.44 640 956 897 657 764 901 1 1 1 1 1 1 31217 10692 530 10587 16621 21694 21694 1 KSNIHCNTIAPNAGSR Unmodified 1738.8533 0.85329954 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 8.5 0.5 1 1 29.607 29.607 4 6.1914E-06 5599 TMT1-7 89.936 77.79 58.36 53.502 64.754 46.516 52.919 72.044 55 55 65 47 55 69 2 2 2 2 2 2 12090 10693 1250 10588 16622;16623 21695;21696 21695 2 KSNTVQIVVCEMLSQPR Unmodified 1988.0183 0.018315961 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 1 9 0 2 66.353 66.353 3 2.0598E-06 18201 TMT1-8 72.932 51.091 38.03 50.737 57.572 43.734 49.262 60.422 36 51 58 44 51 58 1 1 1 1 1 1 11445 10694 740 10589 16624;16625 21697;21698 21697 2 KSPNLSK Unmodified 772.4443 0.44430282 1158 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 1 9 0 1 33.67 33.67 3 0.039809 5992 TMT1-8 78.334 31.268 68.998 63.305 71.912 65.724 55.03 76.248 65 65 73 65 58 73 1 1 1 1 1 1 3960.5 10695 1158 10590 16626 21699 21699 1 KSQIFSTASDNQPTVTIK Unmodified 1964.0215 0.021470309 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 8 0 1 52.297 52.297 4 1.4894E-19 14489 TMT1-7 137.14 118.1 160.61 219.38 231.47 125.2 222.44 238.83 152 220 232 131 226 230 1 1 1 1 1 1 29614 10696 640 10591 16627 21700 21700 1 KSSDILSVLK Unmodified 1088.6441 0.64412484 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 9 0 1 57.39 57.39 3 0.0097295 14681 TMT1-8 73.848 33.999 115.22 198.7 124.36 109.51 117.63 174.67 109 196 131 109 123 167 1 1 1 1 1 1 8816.1 10697 1723 10592 16628 21701 21701 1 KSSEEAQK Phospho (STY) 985.41176 0.41175544 2261 Q8TEY7-3;Q8TEY7-2;Q8TEY7 USP33 Ubiquitin carboxyl-terminal hydrolase 33 yes no 0 0 0 1 1 9 0 1 69.331 69.331 3 0.031058 19404 TMT1-8 45.997 10.582 90.82 316.84 156.89 97.441 249.58 216.74 87 306 167 102 250 210 1 1 1 1 1 1 13313 10698 2261 10593 16629 21702 21702 9 1 KSSSISSFKDPK Unmodified 1309.6878 0.68778057 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 2 9 0 1 40.141 40.141 4 0.0087106 8166 TMT1-8 66.619 36.561 45.145 554.95 418.05 283.04 362.92 170.86 47 531 429 288 365 170 1 1 1 1 1 1 12043 10699 690 10594 16630 21703 21703 1 KSSTPEEVK Unmodified 1003.5186 0.51858998 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 4.75 2.28 1 1 1 1 31.967 31.967 3 0.0011117 6844 TMT1-4 101.39 50.484 13544 13803 13974 11047 14758 10544 12765 14051 14198 11123 14940 10286 7 7 7 7 7 7 902070 10700 865 10595 16631;16632;16633;16634 21704;21705;21706;21707;21708;21709;21710 21707 7 KSTVLQQQYNR Unmodified 1363.7208 0.72081203 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8 0 1 35.121 35.121 3 3.9753E-05 7701 TMT1-7 111.96 104.74 153.28 338.04 100.35 189.45 127.96 315.08 145 329 120 181 141 299 1 1 1 1 1 1 33171 10701 3010 10596 16635 21711 21711 1 KSVFEEEVR Unmodified 1121.5717 0.57168818 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 1 5 0 1 41.632 41.632 3 0.044844 10679 TMT1-4 52.6 30.593 199.5 401.13 213.57 277.88 297.56 375.27 189 393 232 271 309 360 1 1 1 1 1 1 16679 10702 1577 10597 16636 21712 21712 1 KSVQPTSEER Unmodified 1159.5833 0.5833155 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 1 5 0 1 26.734 26.734 3 0.023788 4780 TMT1-4 59.84 41.233 69.173 56.238 48.451 67.532 33.253 68.341 65 58 51 65 37 65 2 2 2 2 2 2 7769.4 10703 2864 10598 16637 21713;21714 21713 2 KTAAELLQSQGSQAGGSQTLKR Unmodified 2258.1979 0.19787154 1752 Q14141-2;Q14141-4;Q14141 SEPT6 Septin-6 yes no 0 0 0 0 2 9 0 1 43.933 43.933 4 0.0002158 9458 TMT1-8 58.324 32.499 61.429 94.958 54.793 43.915 48.447 83.898 58 94 58 44 51 80 1 1 1 1 1 1 5654.8 10704 1752 10599 16638 21715 21715 1 KTAAVCVAK Unmodified 946.52699 0.52698659 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 1 9 0 1 36.856 36.856 3 0.014563 7007 TMT1-8 72.652 24.714 153.55 302.26 266.6 246.04 194.98 359.01 146 298 274 243 209 342 1 1 1 1 1 1 17654 10705 1467;1637 10600 16639 21716 21716 1 KTAEAGGVTGK Unmodified 1017.5455 0.54547343 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 6.5 0.5 1 1 32.633 32.633 3 0.00057421 7162 TMT1-5 65.773 37.76 53.839 103.89 60.504 74.569 85.794 51.918 51 102 65 73 87 51 1 1 1 1 1 1 2437.6 10706 606 10601 16640;16641 21717;21718 21717 2 KTCDALQAK Unmodified 1033.5226 0.5226295 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 1 7 0 1 36.208 36.208 3 0.014717 8062 TMT1-6 67.207 19.919 139.16 96.566 154.23 84.028 99.488 97.365 131 102 152 87 102 94 1 1 1 1 1 1 15363 10707 1702 10602 16642 21719 21719 1 KTDGYSGADISIIVR Unmodified 1593.8362 0.83623572 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 1 6 0 1 52.729 52.729 3 1.4567E-07 15241 TMT1-5 109.24 87.045 169.86 227.13 112.66 133.44 161.28 211.8 160 226 123 131 167 203 1 1 1 1 1 1 21681 10708 267 10603 16643 21720 21720 1 KTDIAAFVK Unmodified 991.57023 0.57023162 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 1 8 0 1 51.795 51.795 3 0.014044 14300 TMT1-7 68.069 29.712 122.78 372.47 327.97 283.23 289.5 328.59 118 363 336 282 300 316 1 1 1 1 1 1 15311 10709 1130 10604 16644 21721 21721 1 KTEAPAAPAAQETK Unmodified 1411.7307 0.73070802 1513 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 0 1 5 0 1 34.163 34.163 3 3.2671E-05 7727 TMT1-4 93.51 76.108 30.53 58.837 48.863 59.14 71.332 67.255 29 58 51 58 73 65 1 1 1 1 1 1 7053.6 10710 1513 10605 16645 21722 21722 1 KTEELEEESFPER Unmodified 1621.7471 0.74714594 2976 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 1 2 0 1 45.151 45.151 3 0.00012619 12984 TMT1-1 95.067 77.15 68.782 110.19 68.384 81.792 83.593 106.35 65 109 73 80 87 102 1 1 1 1 1 1 11650 10711 2976 10606 16646 21723 21723 1 KTFSHELSDFGLESTAGEIPVVAIR Unmodified 2702.3915 0.39154555 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 6.5 0.5 1 1 68.067 68.067 5 1.9626E-14 21242 TMT1-5 93.966 82.507 153.36 226 183.04 159.86 160.32 204.36 145 225 189 159 167 196 2 2 2 2 2 2 39223 10712 955 10607 16647;16648 21724;21725 21724 2 KTFTAWCNSHLR Unmodified 1519.7354 0.73541624 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-3;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 1 6.33 3.77 1 2 43.504 43.504 4 0.00056919 8743 TMT1-8 73.466 54.072 1785.7 2592.3 2449.7 1720.9 2090.6 2583 1690 2588 2487 1744 2159 2479 4 4 4 4 4 4 124740 10713 672;195;1022 10608 16649;16650;16651 21726;21727;21728;21729 21728 4 KTGQAPGYSYTAANK Unmodified 1555.7631 0.76307078 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 1 7.5 0.5 1 1 37.714 37.714 3 2.1448E-11 8635 TMT1-7 128.64 91.085 247.37 235.67 243.51 187.63 235.52 261.91 233 241 247 189 242 252 2 2 2 2 2 2 41673 10714 1533 10609 16652;16653 21730;21731 21731 2 KTGSYGALAEITASK Unmodified 1495.7882 0.7882229 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 1 8 0 2 51.974 51.974 3;4 2.5682E-06 14440 TMT1-7 80.609 63.925 68.51 140.74 88.268 104.39 97.489 128.34 65 138 94 102 102 123 1 1 1 1 1 1 7751.9 10715 118 10610 16654;16655 21732;21733 21733 2 KTHIQDNHDGTYTVAYVPDVTGR Unmodified 2586.2463 0.2462783 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6 0.816 1 1 1 44 44 5 4.1442E-29 11760 TMT1-5 129.85 122.05 1350.1 1658.9 1613.9 1290.5 1646.2 1903.8 1275 1670 1643 1297 1693 1830 6 6 6 6 6 6 446090 10716 831 10611 16656;16657;16658 21734;21735;21736;21737;21738;21739 21738 6 KTINQWVK Unmodified 1015.5815 0.581465 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 1 9 0 1 46.29 46.29 2 0.018002 10327 TMT1-8 80.239 44.943 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10717 967 10612 16659 21740 21740 1 KTKPYIQVDIGGGQTK Unmodified 1731.9519 0.95193418 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 2 9 0 1 46.683 46.683 4 2.984E-16 10474 TMT1-8 127.22 108.85 177.19 412.09 348.12 232.76 236.15 335.45 169 404 355 236 247 321 1 1 1 1 1 1 26023 10718 640 10613 16660 21741 21741 1 KTLDMIK Unmodified 847.48372 0.48372479 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 8 0 1 46.341 46.341 3 0.033476 12114 TMT1-7 66.621 12.217 400.99 634.19 416.3 369.44 482 577.88 379 628 437 369 496 555 1 1 1 1 1 1 45577 10719 708 10614 16661 21742 21742 1 KTLDMIKK Unmodified 975.57869 0.57868781 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 2 9 0 1 43.884 43.884 4 0.034756 9440 TMT1-8 63.283 34.885 390.01 503.46 388.48 369.78 261.37 757.93 368 504 404 364 291 718 1 1 1 1 1 1 15024 10720 708 10615 16662 21743 21743 1 KTLEEEAK Unmodified 946.49713 0.49712625 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4.25 0.829 1 1 2 35.892 35.892 2;3 0.001895 8443 TMT1-4 110.53 66.139 1010.3 1232.4 1380.5 1046.9 1157.7 1590.5 955 1244 1392 1053 1205 1523 4 4 4 4 4 4 432630 10721 1019 10616 16663;16664;16665;16666 21744;21745;21746;21747 21747 4 KTLLGDGPVVTDPK Unmodified 1438.8031 0.80314468 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 7 0 2 51.872 51.872 3;4 2.4262E-06 14284 TMT1-6 82.707 54.161 258.91 399.43 330.33 227.08 361.82 429.93 245 397 338 232 370 413 1 1 1 1 1 1 23549 10722 1269 10617 16667;16668 21748;21749 21749 2 KTLLSNLEEAK Unmodified 1244.6976 0.69761697 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 1 7 0 1 53.714 53.714 3 3.7012E-06 14951 TMT1-6 124.47 91.47 372.55 564.26 386.42 360.45 357.19 538.8 352 560 405 357 375 515 2 2 2 2 2 2 38127 10723 639 10618 16669 21750;21751 21750 2 KTLVLIGASGVGR Unmodified 1269.7769 0.77687035 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 1 9 0 1 51.995 51.995 3 0.0029975 12566 TMT1-8 70.41 43.28 161.12 187.35 172.63 129.12 200.42 235.2 152 189 176 131 205 226 1 1 1 1 1 1 15975 10724 1534 10619 16670 21752 21752 1 KTPIAVR Unmodified 783.49667 0.49667274 457 P04040 CAT Catalase yes yes 0 0 0 0 1 9 0 1 32.955 32.955 3 0.024629 5767 TMT1-8 86.472 64.701 196.04 276.37 179.95 156.64 167.33 278.78 185 275 189 156 176 266 1 1 1 1 1 1 14338 10725 457 10620 16671 21753 21753 1 KTPVIVTLK Unmodified 997.65357 0.65356732 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 1 9 0 1 49.598 49.598 3 0.012063 11628 TMT1-8 80.979 12.086 356.07 232.59 371.22 324.43 286.41 424.62 335 247 371 322 302 406 1 1 1 1 1 1 20570 10726 3017 10621 16672 21754 21754 1 KTPVPGK Unmodified 725.44357 0.44357454 1384 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 1 4.5 3.5 1 1 34.014 34.014 3 0.019091 7194 TMT1-7 77.923 35.053 6732.9 6885.6 7186.2 5908.5 7054 6328 6347 7011 7298 5919 7211 6125 2 2 2 2 2 2 348330 10727 1384 10622 16673;16674 21755;21756 21756 2 KTQDQISNIK Unmodified 1173.6354 0.63535107 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 1 7 0 1 38.613 38.613 3 0.0003641 9022 TMT1-6 103.44 82.189 169.29 291.35 155.52 177.87 161.84 410.06 160 287 168 174 176 389 1 1 1 1 1 1 12130 10728 1801 10623 16675 21757 21757 1 KTQEQLALEMAELTAR Unmodified 1830.9509 0.9509479 894 P26038 MSN Moesin yes yes 0 0 0 0 1 5.67 0.471 1 2 61.722 61.722 3;4 6.1669E-18 18805 TMT1-5 143.83 127.16 937.43 1311.8 934.02 841.79 1215 1323.4 885 1307 975 842 1242 1274 5 5 5 5 5 5 224810 10729 894 10624 16676;16677;16678 21758;21759;21760;21761;21762 21761 5 KTQETLSQAGQK Unmodified 1317.6888 0.6888432 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 1 7 0 1 34.658 34.658 3 5.6465E-05 7478 TMT1-6 103.2 77.486 30.731 44.288 27.269 29.123 50.447 45.464 29 44 29 29 51 44 1 1 1 1 1 1 2949.9 10730 172 10625 16679 21763 21763 1 KTSATVGPK Unmodified 887.50763 0.50763136 732 P16104 H2AFX Histone H2AX yes yes 0 0 0 0 1 8 0 1 31.535 31.535 3 0.004102 6364 TMT1-7 84.687 55.311 493.44 378.86 423.6 830.52 526.01 781.29 464 394 449 792 565 747 1 1 1 1 1 1 33693 10731 732 10626 16680 21764 21764 1 KTSTQEYAAK Unmodified 1125.5666 0.5666028 1718 Q13555-10;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-11;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 0 0 1 6 0 1 32.328 32.328 3 0.0043233 7139 TMT1-5 52.837 41.146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10732 1718 10627 16681 21765 21765 1 KTSYLTELIDR Unmodified 1337.7191 0.7190807 3054;2825 Q9P289;Q9P289-2;Q9P289-3;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 1 7 0 1 56.656 56.656 3 8.5965E-05 16120 TMT1-6 104.7 91.283 388.76 445.84 466.91 362.99 315.98 486.67 367 451 473 363 334 465 1 1 1 1 1 1 45499 10733 2825;3054 10628 16682 21766 21766 1 KTTDTASVQNEAK Unmodified 1391.6892 0.68923713 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 5.33 0.471 2 1 32.966 32.966 3;4 7.5021E-17 7184 TMT1-4 176.43 132.24 565.47 600.25 573.88 575.36 656.99 506.79 533 609 590 569 670 493 4 4 4 4 4 4 171050 10734 2913 10629 16683;16684;16685 21767;21768;21769;21770 21767 4 KTVGVEPAADGK Unmodified 1170.6245 0.62445203 1134 P46779-4;P46779-5;P46779;P46779-2;P46779-3 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 1 6 0 1 37.506 37.506 3 0.004904 9190 TMT1-5 69.403 44.549 216.23 417.09 273.54 195.6 356.32 327.75 205 410 285 200 360 317 1 1 1 1 1 1 21975 10735 1134 10630 16686 21771 21771 1 KTVQVEQSK Unmodified 1045.5768 0.57677356 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 7 0 1 33.909 33.909 3 0.0013459 7192 TMT1-6 99.752 70.794 116.06 75.848 86.482 56.477 93.698 59.154 109 80 87 58 94 58 1 1 1 1 1 1 3804.8 10736 1883 10631 16687 21772 21772 1 KTVTAMDVVYALK Oxidation (M) 1453.7851 0.78505177 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 1 0 1 8 0 2 58.787 58.787 3 0.00019067 17164 TMT1-7 88.974 40.349 338.17 431.39 326.62 331.23 356.94 554.79 319 432 341 327 374 530 2 2 2 2 2 2 51393 10737 1443 10632 16688;16689 21773;21774 21774 232 2 KTVTAMDVVYALK Unmodified 1437.7901 0.79013715 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 9 0 2 65.796 65.796 3;4 6.1845E-11 18065 TMT1-8 124.09 75.391 1152.4 1880.8 1290.3 1429.8 1656.5 2391.7 1090 1861 1361 1407 1725 2288 4 4 4 4 4 4 324330 10738 1443 10632 16690;16691 21775;21776;21777;21778 21776 4 KTVTAMDVVYALKR Unmodified 1593.8912 0.89124818 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 2 9 0 1 60.487 60.487 4 0.00010763 15878 TMT1-8 90.853 62.526 658.01 860.36 489.2 561 410.19 1224.9 620 858 526 547 457 1160 2 2 2 2 2 2 54963 10739 1443 10633 16692 21779;21780 21779 2 KTYDLLFK Unmodified 1026.575 0.57498264 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 1 9 0 1 56.814 56.814 3 0.01821 14419 TMT1-8 73.067 31.087 185.45 289.56 325.13 232.84 304.41 358.02 176 289 327 236 313 344 1 1 1 1 1 1 35201 10740 1372 10634 16693 21781 21781 1 KTYVTPR Unmodified 863.4865 0.48650199 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 1 8 0 1 30.379 30.379 3 0.004263 5932 TMT1-7 63.48 40.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10741 1135 10635 16694 21782 21782 1 KVADALTNAVAHVDDMPNALSALSDLHAHK Unmodified 3123.5771 0.57713127 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 1 8 0 1 71.549 71.549 5 4.8362E-09 22054 TMT1-7 72.292 61.165 324.04 316.17 274.43 250.7 154.82 242.89 305 322 283 247 167 232 2 2 2 2 2 2 36248 10742 1499 10636 16695 21783;21784 21783 2 KVAGAATPK Unmodified 841.50215 0.50215205 744 P16402 HIST1H1D Histone H1.3 yes yes 0 0 0 0 1 8 0 1 31.777 31.777 3 0.0098045 6411 TMT1-7 73.499 61.286 231.56 236.47 195.81 190.39 239.89 69.907 218 240 203 189 240 72 2 2 2 2 2 2 91376 10743 744 10637 16696 21785;21786 21785 2 KVDQPPEAK Unmodified 1010.5397 0.53965977 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 1 5 0 1 33.644 33.644 3 0.0089706 7519 TMT1-4 45.939 15.375 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10744 2303 10638 16697 21787 21787 1 KVDVTSK Unmodified 775.44397 0.44396847 2501 Q99961;Q99961-3;Q99961-2 SH3GL1 Endophilin-A2 yes no 0 0 0 0 1 7 0 1 35.845 35.845 3 0.026337 7930 TMT1-6 72.23 35.529 280.41 163.51 162.64 250.55 226.87 155.56 263 174 171 242 233 152 1 1 1 1 1 1 7502.5 10745 2501 10639 16698 21788 21788 1 KVDWLTEK Unmodified 1017.5495 0.54949617 1358;1765;1059 P60842;P60842-2;P38919;Q14240;Q14240-2 EIF4A1;EIF4A3;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 1 7 0 1 51.541 51.541 3 0.004733 14190 TMT1-6 93.096 48.786 360.92 560.32 541.51 407.51 560.07 507.42 342 558 550 412 570 491 2 2 2 2 2 2 67801 10746 1358;1059;1765 10640 16699 21789;21790 21790 2 KVEAPFIPK Unmodified 1027.6066 0.60661712 760;850;847 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22612 PRKACA;PRKACB;PRKACG cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma no no 0 0 0 0 1 8 0 1 50.327 50.327 3 0.014272 13758 TMT1-7 67.776 20.516 1853.2 2807.4 2101.8 1631.8 2232.3 2596 1752 2789 2174 1646 2291 2495 1 1 1 1 1 1 134960 10747 760;850;847 10641 16700 21791 21791 1 KVEAQLQELQVK Unmodified 1411.8035 0.80347903 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5.4 2.24 1 2 2 51.939 51.939 3;4 9.7598E-09 14802 TMT1-5 136.99 76.297 1985.6 2848.4 2550.5 2103.3 2531 2647.1 1878 2843 2611 2107 2599 2551 6 6 6 6 6 6 574380 10748 1019 10642 16701;16702;16703;16704;16705 21792;21793;21794;21795;21796;21797 21795 6 KVEDLFLTFAK Unmodified 1309.7282 0.72818882 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 8.5 0.5 1 1 72.529 72.529 4 0.0045155 22533 TMT1-7 67.776 45.578 69.637 125.7 91.972 65.666 52.651 145.61 66 124 95 66 58 138 2 2 2 2 2 2 6109.5 10749 1737 10643 16706;16707 21798;21799 21798 2 KVEEAEPEEFVVEK Unmodified 1660.8196 0.8195826 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 1 3 1 2 2 52.901 52.901 3;4 2.1957E-07 15240 TMT1-3 110.97 85.106 389.49 845.57 547.85 484.94 665.48 776.25 370 828 575 485 683 746 4 4 4 4 4 4 124590 10750 1681 10644 16708;16709;16710;16711 21800;21801;21802;21803 21802 4 KVEELQACVETAR Unmodified 1531.7664 0.7664416 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 1 5 0 1 45.212 45.212 3 0.0073775 12120 TMT1-4 63.681 41.206 91.824 153.42 126.54 124.25 140.54 158.02 87 152 131 123 145 152 1 1 1 1 1 1 11351 10751 1805 10645 16712 21804 21804 1 KVEEPSIYESVR Unmodified 1434.7355 0.73545904 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 1 4.5 0.5 1 1 43.739 43.739 3 4.5667E-05 11772 TMT1-3 103.67 79.073 200.11 213.93 270.69 195.1 159.22 310.99 189 218 271 196 171 296 1 1 1 1 1 1 25140 10752 2922 10646 16713;16714 21805;21806 21805 2 KVEEVVYDLSIR Unmodified 1448.7875 0.78749461 1865 Q15631 TSN Translin yes yes 0 0 0 0 1 5.5 0.5 1 1 61.74 61.74 3 4.9775E-08 18678 TMT1-4 127.71 56.536 268.89 346.8 319.68 268.65 335.55 347.54 254 348 327 269 344 335 2 2 2 2 2 2 61726 10753 1865 10647 16715;16716 21807;21808 21807 2 KVESLQEEIAFLK Unmodified 1532.845 0.84500949 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 5 2.35 1 2 1 66.231 66.231 2;3;4 2.4021E-11 19890 TMT1-6 144.68 93.46 1831.6 3479.2 2101.9 2208.9 2755.7 3090.6 1735 3419 2235 2183 2833 2973 6 6 6 6 6 6 434100 10754 575 10648 16717;16718;16719;16720 21809;21810;21811;21812;21813;21814 21814 6 KVESLWPIFR Unmodified 1273.7183 0.71829284 1080 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 0 1 9 0 1 64.965 64.965 3 0.030085 17692 TMT1-8 62.633 14.661 53.881 95.369 60.673 82.242 84.122 90.342 51 94 65 80 87 87 1 1 1 1 1 1 7399.1 10755 1080 10649 16721 21815 21815 1 KVETDHIVAAVGLEPNVELAK Unmodified 2231.2161 0.21614737 373 O95831-3;O95831;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 1 6 0 1 59.334 59.334 4 1.5838E-10 17842 TMT1-5 98.132 82.54 108.23 114.33 107.74 62.656 104.61 189.96 102 116 109 65 109 181 1 1 1 1 1 1 18727 10756 373 10650 16722 21816 21816 1 KVFASLPQVER Unmodified 1272.719 0.71902112 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 1 9 0 1 50.016 50.016 3 1.2103E-06 11763 TMT1-8 126.51 93.755 648.65 730.36 729.61 513.95 581.05 820.23 612 739 739 520 605 785 2 2 2 2 2 2 123900 10757 250 10651 16723 21817;21818 21817 2 KVFDPVPVGVTK Unmodified 1284.7442 0.74417324 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 1 8 0 1 54.744 54.744 3 0.00577 15479 TMT1-7 67.102 40.666 153.23 274.21 163.58 167.61 275.05 234.13 145 270 174 167 278 227 1 1 1 1 1 1 20105 10758 1619 10652 16724 21819 21819 1 KVFHSGTAAK Unmodified 1044.5716 0.5716286 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 1 9 0 1 31.07 31.07 4 0.0011652 5279 TMT1-8 80.763 45.539 176.73 286.34 171.04 175.45 241.24 263.88 167 283 182 174 247 254 2 2 2 2 2 2 8691.1 10759 2753 10653 16725 21820;21821 21821 2 KVGAENVAIVEPSER Unmodified 1596.8471 0.84713476 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 1 5 0 2 43.372 43.372 3;4 1.5574E-15 11364 TMT1-4 140.77 115.32 160.93 241.85 158.92 144.88 219.87 257.03 152 240 167 145 225 247 2 2 2 2 2 2 37975 10760 3063 10654 16726;16727 21822;21823 21822 2 KVGFNPK Unmodified 788.45447 0.45447358 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 1 9 0 1 39.107 39.107 3 0.03255 7817 TMT1-8 55.504 23.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10761 718 10655 16728 21824 21824 1 KVGYTPDWIFLLR Unmodified 1606.8871 0.88714908 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 9 0 1 73.46 73.46 3 1.2232E-09 21096 TMT1-8 121.42 84.436 146.18 222.06 129.36 132.4 163.64 144.57 138 220 138 131 167 140 1 1 1 1 1 1 70169 10762 1540 10656 16729 21825 21825 1 KVHVIFNYK Unmodified 1146.655 0.6549643 918 P27797 CALR Calreticulin yes yes 0 0 0 0 1 9 0 1 44.913 44.913 4 0.00047712 9794 TMT1-8 104.17 67.642 2670.5 3859.7 3066.5 2512.3 3096.3 3701.3 2524 3845 3164 2519 3192 3555 3 3 3 3 3 3 142840 10763 918 10657 16730 21826;21827;21828 21827 3 KVIASMTVGK Unmodified 1032.6002 0.60015154 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 1 9 0 1 46.731 46.731 3 0.00035613 10494 TMT1-8 89.403 15.622 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10764 1637 10658 16731 21829 21829 1 KVIEEEQR Unmodified 1029.5455 0.54547343 1776 Q14432 PDE3A cGMP-inhibited 3',5'-cyclic phosphodiesterase A yes yes 0 0 0 0 1 4 0 1 30.666 30.666 3 0.037096 6611 TMT1-3 60.717 30.368 99.573 90.969 139.54 85.619 61.445 76.065 94 94 138 87 65 73 1 1 1 1 1 1 6147.5 10765 1776 10659 16732 21830 21830 1 KVIQYLAYVASSHK Unmodified 1605.8879 0.88787736 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 9 0 1 63.45 63.45 4 1.9533E-05 17044 TMT1-8 91.032 68.005 533.82 733.65 550.75 457.15 564.4 710.91 504 732 571 458 583 682 2 2 2 2 2 2 59947 10766 1019 10660 16733 21831;21832 21831 2 KVIVIPVGIGPHANLK Unmodified 1654.0294 0.029396641 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 9 0 1 56.13 56.13 4 5.8186E-09 14191 TMT1-8 108.58 95.812 153.67 179.37 170.58 138.07 138.21 207.12 145 181 174 138 145 198 1 1 1 1 1 1 14220 10767 471 10661 16734 21833 21833 1 KVLEEEEQR Unmodified 1158.5881 0.58806652 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 4 0 1 33.736 33.736 3 0.038112 7798 TMT1-3 54.343 21.115 184.8 145.98 196.69 127.66 202.02 282.06 174 152 196 131 208 270 1 1 1 1 1 1 24503 10768 1597 10662 16735 21834 21834 1 KVLELTGK Unmodified 886.54877 0.54876789 0 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 1 8 0 1 47.592 47.592 3 0.012556 12631 TMT1-7 77.379 30.989 795.51 1228.8 872.97 785.54 970.09 1220.6 752 1219 911 783 1002 1171 1 1 1 1 1 1 51710 10769 0 10663 16736 21835 21835 1 KVLGAFSDGLAHLDNLK Unmodified 1796.9785 0.97848328 1497;428 P02042;P68871 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 1 6.5 3.2 1 2 1 65.905 65.905 3;4 1.9316E-20 17828 TMT1-8 133.86 86.673 6744.7 6036.9 4825.4 4132.2 1529 2977.4 6341 6177 4996 4070 1741 2834 6 6 6 6 6 6 475010 10770 428;1497 10664 16737;16738;16739;16740 21836;21837;21838;21839;21840;21841 21840 6 KVNLGVGAYR Unmodified 1075.6138 0.61382777 756 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 0 1 9 0 1 41.97 41.97 3 0.02032 8746 TMT1-8 67.414 39.86 108.2 121.81 105.87 94.6 97.39 144.33 102 123 109 94 102 138 1 1 1 1 1 1 6429.8 10771 756 10665 16741 21842 21842 1 KVPDNQQFLDLR Unmodified 1471.7783 0.77832691 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 1 6 0 1 50.699 50.699 3 2.1801E-05 14407 TMT1-5 107.65 81.998 146.5 134.44 150.19 122.7 148.45 142.87 138 138 152 123 152 138 1 1 1 1 1 1 17633 10772 2563 10666 16742 21843 21843 1 KVPEFQFLIGDEAATHLK Unmodified 2042.0837 0.083676635 1011 P34949 MPI Mannose-6-phosphate isomerase yes yes 0 0 0 0 1 7 0 1 64.828 64.828 4 0.010103 19420 TMT1-6 45.704 27.166 115.47 144.35 128.35 93.141 103.72 175.06 109 145 131 94 109 167 1 1 1 1 1 1 13859 10773 1011 10667 16743 21844 21844 1 KVPGEGLPLPK Unmodified 1133.6808 0.6808447 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 1 8 0 1 50.316 50.316 3 0.0044793 13730 TMT1-7 51.569 27.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10774 886 10668 16744 21845 21845 1 KVPGVTAIELDEDTGTFR Unmodified 1946.9949 0.99492121 1235 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 1 6 0 1 59.162 59.162 3 0.006723 17765 TMT1-5 37.334 16.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10775 1235 10669 16745 21846 21846 1 KVPLDMSLFLK Unmodified 1289.7417 0.7417304 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 MYO5A Unconventional myosin-Va yes no 0 0 0 0 1 9 0 1 70.925 70.925 3 0.0022051 20030 TMT1-8 83.314 39.323 38.039 58.319 49.528 44.066 57.089 45.275 36 58 51 44 58 44 1 1 1 1 1 1 5456.5 10776 3016 10670 16746 21847 21847 1 KVPLQEGPK Unmodified 994.58113 0.58113065 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 1 7 0 1 39.504 39.504 3 0.0001323 9378 TMT1-6 90.827 61.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10777 1592 10671 16747 21848 21848 1 KVPQVSTPTLVEVSR Unmodified 1638.9305 0.93047046 28;29 CON__P02768-1;P02768;P02768-2;P02768-3;CON__P02769 ALB Serum albumin no no 0 0 0 0 1 6.25 3.11 1 1 1 1 50.925 50.925 3 2.4113E-17 13843 TMT1-7 150.19 122.97 707.67 1143.5 919.56 714.6 816.92 1206.9 670 1134 946 718 852 1154 5 5 5 5 5 5 579800 + 10778 28;29 10672 16748;16749;16750;16751 21849;21850;21851;21852;21853 21851 5 KVPTVSRPYSFIEFDTFIQK Unmodified 2401.2682 0.26818294 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 2 9 0 1 67.39 67.39 4 4.1944E-05 18645 TMT1-8 65.25 41.567 138.82 201.39 122.69 140.65 152.55 242.96 131 200 131 138 160 232 1 1 1 1 1 1 22281 10779 272 10673 16752 21854 21854 1 KVQAAQSEAK Unmodified 1058.572 0.57202253 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 1 6.5 0.5 1 1 30.465 30.465 3 0.00021631 6374 TMT1-5 109.72 75.846 138.46 96.612 90.664 102.13 152.27 89.463 130 101 94 101 153 88 2 2 2 2 2 2 5642.3 10780 1913 10674 16753;16754 21855;21856 21855 2 KVQSDGQIVLVDDWIK Unmodified 1841.9887 0.98871362 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 1 7 0 1 65.461 65.461 3 0.0082352 19717 TMT1-6 53.565 30.912 23.216 44.789 27.625 21.296 58.686 29.239 22 44 29 22 58 29 1 1 1 1 1 1 11729 10781 1619 10675 16755 21857 21857 1 KVQSGNINAAK Unmodified 1128.6251 0.62512073 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 1 8 0 1 33.604 33.604 3 1.6515E-07 7136 TMT1-7 148.78 97.339 332.45 473.94 349.77 337.91 509.49 337.24 314 472 365 337 513 330 1 1 1 1 1 1 31158 10782 1178 10676 16756 21858 21858 1 KVSAHTR Unmodified 797.45079 0.45078518 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 1 8 0 1 19.214 19.214 3 0.012917 3370 TMT1-7 85.666 56.356 187.61 88.33 133.28 122.7 143.85 93.967 176 97 134 122 146 92 2 2 2 2 2 2 4655.4 10783 372 10677 16757 21859;21860 21860 2 KVSASVAEVQEQYTER Unmodified 1822.9061 0.9061062 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 1 5 0 1 45.562 45.562 3 3.7279E-10 12279 TMT1-4 116.82 105.44 84.372 170.29 102.38 110.38 141.17 158 80 167 109 109 145 152 1 1 1 1 1 1 26894 10784 1916 10678 16758 21861 21861 1 KVSHVADTK Unmodified 983.53999 0.53999412 2927 Q9UNF1-2;Q9UNF1 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 0 1 7 0 1 29.11 29.11 4 0.014427 5359 TMT1-6 60.563 36.959 38.149 34.88 50.926 44.249 42.972 29.688 36 36 51 44 44 29 1 1 1 1 1 1 1650.2 10785 2927 10679 16759 21862 21862 1 KVSQPIEGHAASFAQFK Unmodified 1843.9581 0.95808219 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 8.5 0.5 1 1 47.007 47.007 4 9.4097E-10 12410 TMT1-7 104.88 89.037 261.88 328.18 252.06 233.81 310.37 335.46 247 329 262 233 318 323 2 2 2 2 2 2 32661 10786 1540 10680 16760;16761 21863;21864 21863 2 KVTAAMGK Unmodified 804.45276 0.45275902 1390 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 1 9 0 1 37.284 37.284 3 0.02301 7151 TMT1-8 70.399 31.146 146.47 189.4 108.53 109.47 170.19 258.45 138 189 116 109 176 247 1 1 1 1 1 1 6275 10787 1390 10681 16762 21865 21865 1 KVTAQDVR Unmodified 915.51378 0.51377937 894 P26038 MSN Moesin yes yes 0 0 0 0 1 6 0 1 29.049 29.049 3 0.0076901 5870 TMT1-5 85.716 23.754 1197.4 1770.6 1400.3 1119.2 1433.1 1425.9 1132 1762 1444 1125 1466 1376 1 1 1 1 1 1 87887 10788 894 10682 16763 21866 21866 1 KVTEENK Unmodified 846.4447 0.44469675 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 5 0 1 29.418 29.418 3 0.011016 5867 TMT1-4 88.37 35.018 691.24 356.66 381.24 355.98 611.58 294.89 648 385 390 357 610 293 1 1 1 1 1 1 23614 + 10789 32;554 10683 16764 21867 21867 1 KVTELLR Unmodified 857.53345 0.53345218 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 1 8 0 1 43.141 43.141 3 0.018567 10833 TMT1-7 78.334 8.911 253.53 462.56 458.14 285.36 403.16 427.69 241 458 462 293 412 412 1 1 1 1 1 1 83971 10790 1878 10684 16765 21868 21868 1 KVTGEVTDPSGK Unmodified 1216.6299 0.62993134 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 1 6 0 1 38.014 38.014 3 0.024346 9399 TMT1-5 53.777 28.56 92.118 107.83 115.8 62.437 90.749 137.06 87 109 116 65 94 131 1 1 1 1 1 1 8506.2 10791 839 10685 16766 21869 21869 1 KVTHAVVTVPAYFNDAQR Unmodified 2015.0589 0.058858868 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 8.5 0.5 1 1 47.649 47.649 4 2.1988E-07 12640 TMT1-7 91.589 80.735 359.53 484.86 478.86 336.8 391.99 623.08 340 486 485 341 410 595 3 3 3 3 3 3 34175 10792 640 10686 16767;16768 21870;21871;21872 21870 3 KVTQLDLDGPK Unmodified 1212.6714 0.67140222 1705 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 0 1 7 0 1 47.884 47.884 3 6.6473E-06 12670 TMT1-6 119.21 86.482 215.54 257.23 164.68 183.03 265.27 254.67 203 258 175 181 270 246 1 1 1 1 1 1 17225 10793 1705 10687 16769 21873 21873 1 KVVDNTTAK Unmodified 974.53966 0.53965977 2616 Q9H0U4;Q92928 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 0 0 0 0 1 7 0 1 33.333 33.333 3 0.030766 6984 TMT1-6 58.274 15.191 191.77 160.15 275.42 210.89 234.44 140.42 181 167 273 212 238 138 1 1 1 1 1 1 42404 10794 2616 10688 16770 21874 21874 1 KVVDYTTAK Unmodified 1023.5601 0.56006086 1444 P62820;P62820-2 RAB1A Ras-related protein Rab-1A yes no 0 0 0 0 1 7.33 0.471 2 1 40.648 40.648 3;4 0.0015455 9761 TMT1-7 98.353 39.677 909.76 1149.1 853.49 807.28 980.21 1140.4 858 1151 890 802 1010 1096 3 3 3 3 3 3 91316 10795 1444 10689 16771;16772;16773 21875;21876;21877 21877 3 KVVETEDAYK Unmodified 1180.5976 0.59756858 1841 Q15286 RAB35 Ras-related protein Rab-35 yes yes 0 0 0 0 1 5 0 1 39.805 39.805 3 0.00021021 9989 TMT1-4 110.31 69.717 184.45 233.51 181.4 183.21 202.6 221.28 174 234 189 181 209 213 1 1 1 1 1 1 14892 10796 1841 10690 16774 21878 21878 1 KVVGCSCVVVK Unmodified 1233.6573 0.65734884 884 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 1 9 0 2 42.328 42.328 3;4 1.5685E-05 8842 TMT1-8 105.32 52.395 464.36 735.98 500.56 544.1 575.16 738.32 439 729 528 535 598 708 3 3 3 3 3 3 44692 10797 884 10691 16775;16776 21879;21880;21881 21879 3 KVVQSLEQTAR Unmodified 1257.7041 0.70409934 1865 Q15631;Q15631-2 TSN Translin yes no 0 0 0 0 1 7 0 1 40.879 40.879 3 6.8329E-06 9921 TMT1-6 118.88 78.837 145.69 317.83 130.52 147.49 171.12 180.6 138 310 145 145 176 174 1 1 1 1 1 1 12056 10798 1865 10692 16777 21882 21882 1 KVVVCDNGTGFVK Unmodified 1421.7337 0.7336849 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 1 8 0 2 47.792 47.792 3;4 2.9902E-06 12727 TMT1-7 114.21 88.76 394.55 535.14 321.24 427.23 383.73 529.51 372 533 346 415 403 507 2 2 2 2 2 2 56221 10799 1380 10693 16778;16779 21883;21884 21884 2 KVVVEQLNLLVK Unmodified 1380.8704 0.87043638 1011 P34949 MPI Mannose-6-phosphate isomerase yes yes 0 0 0 0 1 9 0 1 63.977 63.977 3 6.443E-05 17310 TMT1-8 99.011 69.204 53.914 87.905 61.469 74.414 91.004 113.6 51 87 65 73 94 109 1 1 1 1 1 1 8336.1 10800 1011 10694 16780 21885 21885 1 KVVVSPTK Unmodified 856.5382 0.53820321 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 9 0 1 37.959 37.959 3 0.014584 7373 TMT1-8 77.662 21.231 98.908 245.62 120.26 140.3 179.24 197.43 94 239 131 138 184 190 1 1 1 1 1 1 12932 10801 786 10695 16781 21886 21886 1 KVWALLYAGGPSGVAR Unmodified 1643.9148 0.91476081 2080 Q7L591;Q7L591-3 DOK3 Docking protein 3 yes no 0 0 0 0 1 9 0 1 64.025 64.025 3 0.0092469 17344 TMT1-8 55.912 35.531 99.749 122.76 83.041 72.403 129.58 119.96 94 123 87 73 131 116 1 1 1 1 1 1 11956 10802 2080 10696 16782 21887 21887 1 KVWDQVK Unmodified 901.50215 0.50215205 2346 Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 1 8 0 1 44.024 44.024 3 0.0071621 11235 TMT1-7 53.968 15.176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10803 2346 10697 16783 21888 21888 1 KVYENYPTYDLTER Unmodified 1789.8523 0.85227972 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 1 5 0 1 49.15 49.15 3 0.0087378 13679 TMT1-4 59.421 45.391 84.664 108.5 105.73 118.39 111.5 127.94 80 109 109 116 116 123 1 1 1 1 1 1 14090 10804 1028 10698 16784 21889 21889 1 KWDTCAPEVILHAVGGK Unmodified 1879.9615 0.96145301 375 O95861-3;O95861-4;O95861;O95861-2 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 1 8 0 1 63.171 63.171 4 0.0068948 18796 TMT1-7 50.787 25.468 92.124 107.85 114.75 85.974 121.09 105.28 87 109 116 87 123 102 1 1 1 1 1 1 11023 10805 375 10699 16785 21890 21890 1 KWENPTQNNAGLEDFER Unmodified 2046.9395 0.93953159 850 P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22694-8 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 0 0 0 0 1 5 0 1 51.984 51.984 3 1.2581E-07 14776 TMT1-4 100.97 83.935 99.902 100.52 76.079 88.597 104.19 167.59 94 102 80 87 109 160 1 1 1 1 1 1 28497 10806 850 10700 16786 21891 21891 1 KWLPELVEHAK Unmodified 1348.7503 0.75032125 1567 Q02252-2;Q02252 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes no 0 0 0 0 1 8 0 1 54.974 54.974 4 0.0051215 15591 TMT1-7 66.262 45.881 130.51 143.38 125.57 155.2 183.31 211.17 123 145 131 152 189 203 1 1 1 1 1 1 11961 10807 1567 10702 16787 21892 21892 1 KWNTTLYEGTWR Unmodified 1553.7627 0.76267685 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 9 0 1 53.514 53.514 3 1.7595E-05 13195 TMT1-8 107.2 81.98 249.53 383.6 296.63 301.5 347.62 409.02 236 381 309 298 359 393 2 2 2 2 2 2 26580 10808 536 10703 16788 21893;21894 21893 2 KWQQLQAK Unmodified 1028.5767 0.57671398 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 1 9 0 1 42.819 42.819 3 0.011519 9037 TMT1-8 81.548 49.133 68.693 109.95 83.607 80.45 106.69 105.69 65 109 87 80 109 102 1 1 1 1 1 1 5266.3 10809 2028 10704 16789 21895 21895 1 KWQTMIEAHVDVK Unmodified 1583.813 0.81299786 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 1 8 0 1 54.286 54.286 4 0.00015772 15285 TMT1-7 88.974 59.646 145.83 297.7 125.22 123.5 185.03 264.42 138 291 138 123 191 253 1 1 1 1 1 1 12725 10810 1386 10705 16790 21896 21896 1 KYAAELHLVHWNTK Unmodified 1708.9049 0.90492441 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 1 9 0 1 48.575 48.575 5 0.0087348 11176 TMT1-8 45.863 24.612 267.35 361.75 386.05 264.79 272.63 326.94 253 363 389 268 283 314 1 1 1 1 1 1 22558 10811 406 10706 16791 21897 21897 1 KYAALYQPLFDK Unmodified 1455.7762 0.77620165 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 1 9 0 2 62.356 62.356 3;4 7.421E-05 16636 TMT1-8 97.463 66.635 215.1 316.43 189.31 230.47 222.05 292.14 203 314 203 225 232 280 2 2 2 2 2 2 27211 10812 2488 10707 16792;16793 21898;21899 21898 2 KYAEAVTR Unmodified 936.50288 0.50288033 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 6 0 1 31.678 31.678 3 0.0035481 6952 TMT1-5 98.055 61.485 340.94 473.09 366.33 379.05 361.77 563.18 322 472 382 373 381 538 2 2 2 2 2 2 50923 10813 397 10708 16794 21900;21901 21901 2 KYAPTEAQLNAVDALIDSMSLAK Unmodified 2448.257 0.25702591 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 8 0 2 83.294 83.294 3;4 6.1777E-18 26571 TMT1-7 111.83 90.031 55.01 72.787 70.345 89.722 62.56 68.571 52 73 73 87 66 66 2 2 2 2 2 2 20381 10814 676 10709 16795;16796 21902;21903 21902 2 KYAVLYQPLFDK Unmodified 1483.8075 0.80750177 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 1 9 0 2 64.26 64.26 3;4 5.4117E-05 17368 TMT1-8 89.46 67.262 170.08 140.3 150.08 114.63 171.05 165.68 160 145 152 116 174 160 1 1 1 1 1 1 11678 10815 1315;1316 10710 16797;16798 21904;21905 21905 2 KYAYSAASGGR Unmodified 1129.5516 0.55162144 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 1 8 0 1 31.296 31.296 3 0.0047696 6247 TMT1-7 75.088 54.784 146.52 149.6 134.75 108.98 113 96.98 138 152 138 109 116 94 1 1 1 1 1 1 16045 10816 758 10711 16799 21906 21906 1 KYCEHDFQMLFAPCCHQCGEFIIGR Unmodified 3202.3704 0.37039143 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3;P0CW19-2 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 1 8 0 1 61.124 61.124 5 7.859E-05 17999 TMT1-7 53.481 45.407 145.64 258.31 190.87 135.85 191.74 296.21 138 255 197 138 199 283 1 1 1 1 1 1 56157 10817 1149 10712 16800 21907 21907 1 KYDAFLASESLIK Unmodified 1483.7922 0.79224564 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 1 8 0 1 63.476 63.476 3 1.279E-06 18963 TMT1-7 115.82 90.497 256.06 437.39 235 300.18 264.01 439.12 242 431 255 292 280 419 1 1 1 1 1 1 68087 10818 1457 10713 16801 21908 21908 1 KYDYYYNTDSK Unmodified 1458.6303 0.63032527 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 6 0 1 43.72 43.72 3 5.746E-05 11635 TMT1-5 109.18 82.148 168.23 292.73 332.2 144.77 199.52 301.31 160 291 330 154 207 288 1 1 1 1 1 1 23372 10819 1723 10714 16802 21909 21909 1 KYEAAYGK Unmodified 928.46543 0.46543219 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 1 7 0 1 37.099 37.099 3 0.019638 8420 TMT1-6 71.016 39.145 309.78 653.54 581.47 435.01 307.97 775.79 295 643 593 435 339 736 1 1 1 1 1 1 22138 10820 1076 10715 16803 21910 21910 1 KYEDICPSTHNMDVPNIK Unmodified 2159.998 0.99797445 1477 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 1 6 0 1 49.641 49.641 4 7.0208E-06 13998 TMT1-5 80.238 57.335 138.15 281.56 166.71 137.76 166.87 256.41 131 276 176 138 174 245 1 1 1 1 1 1 24235 10821 1477 10716 16804 21911 21911 1 KYEEIDNAPEER Unmodified 1491.6842 0.68415175 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 1 2.5 0.5 1 1 37.833 37.833 3 2.8895E-06 10335 TMT1-2 115.83 98.337 347.55 374.74 240.2 257.48 309.91 354.66 327 378 255 254 313 341 4 4 4 4 3 4 39919 10822 1180 10717 16805;16806 21912;21913;21914;21915 21914 4 KYEEVAR Unmodified 893.46068 0.46068117 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 3.33 1.7 1 1 1 30.259 30.259 3 0.0058587 6389 TMT1-3 98.629 47.294 6934.9 9588.6 8636.2 6661.3 8054.5 10207 6556 9587 8820 6704 8328 9791 3 3 3 3 3 3 2164100 + 10823 519;520;521;592;593;594;595;518;1486;1487;551;552 10718 16807;16808;16809 21916;21917;21918 21917 3 KYEMFAQTLQQSR Unmodified 1628.7981 0.79807608 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 9 0 1 52.493 52.493 3 1.3983E-11 12754 TMT1-8 132.95 103.46 168.77 342.8 198.77 182.14 204.3 234.02 160 336 211 181 211 225 2 2 2 2 2 2 35264 10824 1311 10719 16810 21919;21920 21919 2 KYEPPVPTR Unmodified 1085.5869 0.58694431 1415 P62191 PSMC1 26S protease regulatory subunit 4 yes yes 0 0 0 0 1 6 0 1 37.341 37.341 3 0.038219 9131 TMT1-5 54.286 27.188 200.74 199.5 177.09 129.55 163.58 149.9 189 203 181 131 167 145 1 1 1 1 1 1 7247.8 10825 1415 10720 16811 21921 21921 1 KYGNANVWK Unmodified 1078.556 0.55597854 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 1 9 0 1 42.854 42.854 3 0.0056854 9086 TMT1-8 95.311 57.343 107.74 160.46 150.23 91.131 141.25 181.45 102 160 152 94 145 174 1 1 1 1 1 1 8262.7 10826 1482 10721 16812 21922 21922 1 KYHIDGAR Unmodified 958.49846 0.49846366 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 6 0 1 28.171 28.171 4 0.029145 5556 TMT1-5 53.493 22.072 77.095 140.15 88.657 95.474 105.48 120.65 73 138 94 94 109 116 1 1 1 1 1 1 6175.4 10827 1669 10722 16813 21923 21923 1 KYHNVGLSK Unmodified 1044.5716 0.5716286 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 1 9 0 1 34.416 34.416 4 0.0036666 6239 TMT1-8 68.657 43.881 434.29 606.12 433.62 427.72 350.42 737.27 410 604 454 421 378 701 2 2 2 2 2 2 22212 10828 1748 10723 16814 21924;21925 21924 2 KYIAAQGPR Unmodified 1002.5611 0.56106391 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 9 0 1 33.345 33.345 3 0.03429 5881 TMT1-8 62.463 46.881 99.78 107.73 90.499 95.221 113.08 112.97 94 109 94 94 116 109 1 1 1 1 1 1 10215 10829 570 10724 16815 21926 21926 1 KYIPGTK Unmodified 805.46979 0.46978929 1533 P99999;CON__P62894 CYCS Cytochrome c yes no 0 0 0 0 1 9 0 1 39.137 39.137 3 0.039809 7844 TMT1-8 78.334 49.233 349.4 468.92 390.91 342.11 504.51 537.79 330 469 403 343 515 518 1 1 1 1 1 1 21980 10830 1533 10725 16816 21927 21927 1 KYLDSTFTK Unmodified 1101.5706 0.57062555 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 1 8 0 1 48.507 48.507 3 0.0019357 13003 TMT1-7 95.618 53.063 330.95 482.53 414.87 322.34 317.81 548.45 313 481 425 323 336 523 1 1 1 1 1 1 24606 + 10831 666;31 10726 16817 21928 21928 1 KYLMNILK Oxidation (M) 1037.5943 0.59433788 454 P03186;Q1HVH9;Q3KSU8 yes no 0 0 1 0 1 9 0 1 44.458 44.458 4 0.030198 9625 TMT1-8 41.984 12.636 68.411 109.16 131.62 72.362 384.55 249.13 65 109 131 80 379 244 1 1 1 1 1 1 13521 10832 454 10727 16818 21929 21929 58 1 KYNELLK Unmodified 906.51747 0.51746776 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 1 7 0 1 45.093 45.093 3 0.041402 11598 TMT1-6 63.159 36.061 475.08 678.03 550.22 404.73 506.05 926.84 449 676 565 409 532 883 1 1 1 1 1 1 41352 10833 639 10728 16819 21930 21930 1 KYNPTWHCIVGR Unmodified 1529.7562 0.75615168 2402 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic no no 0 0 0 0 1 9 0 1 42.593 42.593 4 0.027498 8948 TMT1-8 41.684 27.526 146.8 127.72 105.33 94.361 111.8 151.38 138 131 109 94 116 145 1 1 1 1 1 1 9014.6 10834 2402 10729 16820 21931 21931 1 KYPDYESK Unmodified 1028.4815 0.48147619 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 1 6 0 1 37.637 37.637 3 0.023737 9239 TMT1-5 67.334 32.802 243.29 476.51 365.07 316.71 251.74 500.23 231 469 378 314 271 476 1 1 1 1 1 1 23585 10835 3017 10730 16821 21932 21932 1 KYPYVEVNSILGIDSAYDR Unmodified 2201.1004 0.10044891 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 1 7 0 1 68.475 68.475 3 3.7886E-13 20810 TMT1-6 110.6 91.532 69.3 49.034 33.314 52.671 57.74 45.256 65 51 36 51 59 44 1 1 1 1 1 1 16132 10836 2789 10731 16822 21933 21933 1 KYPYWPHQPIENL Unmodified 1683.8409 0.84092717 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 1 7.5 0.5 1 1 57.062 57.062 3 9.1256E-05 16466 TMT1-7 97.953 84.273 260.5 371.66 266.78 185.06 298.85 340.05 246 370 276 189 305 327 3 3 3 3 3 3 79018 10837 316 10732 16823;16824 21934;21935;21936 21936 3 KYSQFINFPIYVWSSK Unmodified 2006.0302 0.030184502 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 9 0 1 76.599 76.599 3 1.6429E-05 22320 TMT1-8 85.176 60.638 84.476 146.83 104.82 87.158 89.612 137.09 80 145 109 87 94 131 1 1 1 1 1 1 40364 10838 708 10733 16825 21937 21937 1 KYSSCSTIFLDDSTVSQPNLK Unmodified 2389.1471 0.14714111 2211 Q8ND76-3;Q8ND76-2;Q8ND76 CCNY Cyclin-Y yes no 0 0 0 0 1 7 0 1 47.45 47.45 5 0.046351 12510 TMT1-6 21.803 0.60253 99.189 193.51 117.16 85.58 134.43 174.19 94 190 123 87 138 167 1 1 1 1 1 1 9734.8 10839 2211 10734 16826 21938 21938 1 KYSVWIGGSILASLSTFQQMWISK Unmodified 2729.4251 0.42509429 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 1 9 0 2 100.39 100.39 4;5 4.1919E-07 31113 TMT1-8 65.071 48.405 30.802 60 41.827 45.487 41.522 70.237 29 59 44 44 44 67 2 3 3 2 3 3 4767.1 10840 1357;1479;1488;1952 10735 16827;16828 21939;21940;21941 21939 3 KYTEQITNEK Unmodified 1252.6299 0.62993134 1902 Q16718-2;Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 1 6 0 1 38.804 38.804 3 0.0051294 9683 TMT1-5 77.74 42.853 91.551 161.3 165.8 106.72 134.78 135.8 87 160 167 109 138 131 1 1 1 1 1 1 23621 10841 1902 10736 16829 21942 21942 1 KYVSQYYPK Unmodified 1174.6023 0.60226003 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 1 9 0 1 43.679 43.679 3 0.010958 9361 TMT1-8 84.658 55.318 215.46 248.36 186.41 290.13 313.09 333.25 203 250 199 281 323 321 1 1 1 1 1 1 23772 10842 1970 10737 16830 21943 21943 1 LAAAAAAAQSVYAFSAR Unmodified 1637.8526 0.85255449 528 P07203;P07203-2 GPX1 Glutathione peroxidase 1 yes no 0 0 0 0 0 9 0 2 70.513 70.513 2;3 6.5926E-14 19836 TMT1-8 120.49 92.625 46.435 80.953 61.947 73.893 117.16 53.165 44 80 65 73 117 51 2 2 2 2 2 1 37892 10843 528 10738 16831;16832 21944;21945 21944 2 LAAAEETAVSPR Unmodified 1213.6303 0.63026569 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 3 0 1 43.831 43.831 2 2.3655E-16 12827 TMT1-2 146.71 106.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10844 2539 10739 16833 21946 21946 1 LAAAFAVSR Unmodified 904.51305 0.51305109 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 9 0 1 52.759 52.759 2 0.011734 12849 TMT1-8 90.37 57.76 108.34 114.64 88.648 126.5 140.94 143.09 102 116 94 123 145 138 1 1 1 1 1 1 43487 10845 1312 10740 16834 21947 21947 1 LAAAILGGVDQIHIKPGAK Unmodified 1871.0993 0.09926712 841 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 1 9 0 1 66.131 66.131 4 0.00098596 18086 TMT1-8 57.595 50.974 84.517 139.39 104.22 110.55 126.21 166.96 80 138 109 109 131 160 1 1 1 1 1 1 20140 10846 841 10741 16835 21948 21948 1 LAAALGIR Unmodified 783.49667 0.49667274 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 9 0 1 56.091 56.091 2 0.0089582 14100 TMT1-8 92.785 35.895 348.47 437.01 394.33 357.03 281.74 547.35 329 439 405 353 303 521 2 2 2 2 2 2 59776 10847 666 10742 16836 21949;21950 21949 2 LAACFLDSMATLGLAAYGYGIR Unmodified 2333.1548 0.15480944 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 0 9 0 1 101.94 101.94 3 3.09E-26 31820 TMT1-8 130.77 113.28 23.321 21.338 29.755 29.343 30.87 14.043 22 22 30 29 30 14 2 2 2 2 1 2 6393.6 10848 648;515 10743 16837 21951;21952 21952 2 LAACVGFR Unmodified 892.45891 0.45890703 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 9 0 1 49.215 49.215 2 0.022977 11467 TMT1-8 75.915 42.944 76.916 147.21 112.78 78.73 105.71 136.63 73 145 116 80 109 131 1 1 1 1 1 1 11767 10849 2085 10744 16838 21953 21953 1 LAACVNLIPQITSIYEWK Unmodified 2118.1183 0.11834758 246 O60888-3;O60888;O60888-2 CUTA Protein CutA yes no 0 0 0 0 0 9 0 2 88.421 88.421 3;4 1.2064E-14 26877 TMT1-8 117.4 99.998 154.55 211.16 174.83 169.75 183.71 180.24 146 211 181 168 189 174 4 4 4 4 4 4 35287 10850 246 10745 16839;16840 21954;21955;21956;21957 21955 4 LAADFSVPLIIDIK Unmodified 1513.8756 0.87558134 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 87.931 87.931 3 0.027136 28355 TMT1-7 46.318 29.744 23.258 36.271 27.775 29.398 34.216 60.852 22 36 29 29 36 58 1 1 1 1 1 1 2659.8 10851 917 10746 16841 21958 21958 1 LAADVGK Unmodified 672.38064 0.38063993 665;488 P05141;P12236;P12235 SLC25A5;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 6 0 1 42.979 42.979 2 0.011071 11341 TMT1-5 105.39 77.866 1624.9 2330.7 1753.3 1452.2 1961.1 2021.7 1535 2321 1817 1458 2005 1949 1 1 1 1 1 1 197600 10852 488;665 10747 16842 21959 21959 1 LAAELEDRR Unmodified 1071.5673 0.5672715 2712 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 1 3 0 1 38.827 38.827 3 0.003306 10836 TMT1-2 88.177 36.01 46.237 111.7 69.167 64.745 115.8 74.514 44 109 73 65 116 73 1 1 1 1 1 1 8386.7 10853 2712 10748 16843 21960 21960 1 LAAEQELIR Unmodified 1041.5819 0.58185893 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 49.953 49.953 2 0.0030224 14239 TMT1-3 102.55 44.12 138.47 266.25 126.42 139.79 186.77 191.88 131 261 138 138 191 185 1 1 1 1 1 1 45017 10854 1833 10749 16844 21961 21961 1 LAAFGQLHK Unmodified 983.55525 0.55525025 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 9 0 1 50.606 50.606 3 0.0008516 12006 TMT1-8 100.02 49.314 491.56 665.04 497.31 393.8 557.24 638.62 464 664 515 397 571 614 1 1 1 1 1 1 48942 10855 1655 10750 16845 21962 21962 1 LAAFYGV Unmodified 739.39048 0.39047634 2336 Q92973-2;Q92973;Q92973-3;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 yes no 0 0 0 0 0 8 0 1 73.768 73.768 2 0.037625 23000 TMT1-7 87.265 82.41 54.17 49.764 50.694 27.582 58.14 36.717 51 51 51 29 58 36 1 1 1 1 1 1 18677 10856 2336 10751 16846 21963 21963 1 LAAGASVLK Unmodified 828.5069 0.50690308 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 8 0 1 50.376 50.376 2 0.0010529 13736 TMT1-7 124.98 43.435 138.15 303.15 148.06 138.67 177.55 187.88 131 296 160 138 182 181 1 1 1 1 1 1 13955 10857 3003 10752 16847 21964 21964 1 LAAIAESGVER Unmodified 1114.5982 0.59823728 926 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 0 4 0 1 50.143 50.143 2 0.00015127 14321 TMT1-3 110.76 74.055 84.465 100.39 145.94 100.97 96.584 159.28 80 102 145 102 102 152 1 1 1 1 1 1 18555 10858 926 10753 16848 21965 21965 1 LAAIGEATR Unmodified 900.50288 0.50288033 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 43.966 43.966 2 0.005981 11758 TMT1-5 65.88 25.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10859 1833 10754 16849 21966 21966 1 LAAIVAK Unmodified 684.45341 0.45341094 1071 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 0 9 0 1 53.134 53.134 2 0.0099209 13081 TMT1-8 122.17 47.568 458.08 617.07 573.96 466.05 482.59 614.1 433 618 586 466 502 589 2 2 2 2 2 2 45877 10860 1071 10755 16850 21967;21968 21968 2 LAALADQWQFLVQK Unmodified 1629.8879 0.88787736 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 9 0 1 84.689 84.689 4 0.00063736 25346 TMT1-8 61.375 43.273 15.686 29.06 44.193 35.756 50.948 21.998 15 29 44 36 51 22 1 1 1 1 1 1 4130.8 10861 1737 10756 16851 21969 21969 1 LAALNPESNTAGLDIFAK Unmodified 1843.968 0.96797818 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 7.6 0.49 2 3 76.296 76.296 2;3;4 6.6452E-44 23921 TMT1-6 203.59 155.45 1817 2410.7 2044 1694.2 2123.1 2554.3 1716 2413 2101 1698 2188 2453 7 7 7 7 7 7 697380 10862 59 10757 16852;16853;16854;16855;16856 21970;21971;21972;21973;21974;21975;21976 21971 7 LAALPENPPAIDWAYYK Unmodified 1930.9829 0.98289996 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 76.929 76.929 2;3 9.3834E-10 24082 TMT1-6 106.36 96.075 219.62 263.9 194.75 178.57 232.7 295.04 207 265 203 178 240 283 3 3 3 3 3 3 65614 10863 316 10758 16857;16858 21977;21978;21979 21977 3 LAALTAGDR Unmodified 886.48723 0.48723027 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 6 0 1 45.893 45.893 2 0.0020718 12505 TMT1-5 106.93 55.496 239.15 224.32 192.15 166.67 234.66 223.56 225 229 198 167 239 216 1 1 1 1 1 1 19484 10864 1219 10759 16859 21980 21980 1 LAALTNYLQPQLDWQAR Unmodified 2000.048 0.047959831 2014 Q6ICL3-3;Q6ICL3;Q6ICL3-4;Q6ICL3-6;Q6ICL3-2 TANGO2 Transport and Golgi organization protein 2 homolog yes no 0 0 0 0 0 9 0 1 79.941 79.941 3 7.8333E-11 23528 TMT1-8 106.38 80.395 92.635 77.966 54.302 74.294 61.965 76.05 87 80 58 72 65 73 2 2 2 2 2 2 14150 10865 2014 10760 16860 21981;21982 21981 2 LAAQFIPK Unmodified 886.52764 0.52763852 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 9 0 1 58.714 58.714 2 0.027587 15235 TMT1-8 72.138 28.003 153.08 248.96 210.66 164.77 276.94 243.67 145 247 216 167 280 236 1 1 1 1 1 1 16768 10866 2591 10761 16861 21983 21983 1 LAAQSCALSLVR Unmodified 1287.6969 0.69690547 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 8 0 1 55.816 55.816 2 0.004285 15874 TMT1-7 78.864 46.315 61.568 56.49 64.01 58.814 40.69 76.657 58 58 65 58 44 73 1 1 1 1 1 1 9628.7 10867 1619 10762 16862 21984 21984 1 LAAQVLGLLLEK Unmodified 1266.7911 0.79112343 2212 Q8NDA8-3;Q8NDA8 MROH1 Maestro heat-like repeat-containing protein family member 1 yes no 0 0 0 0 0 9 0 1 93.503 93.503 3 0.00031938 28725 TMT1-8 78.692 59.594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10868 2212 10763 16863 21985 21985 1 LAASGEGGLQELSGHFENQK Unmodified 2070.997 0.99704647 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 6 1 1 1 56.264 56.264 3;4 3.3852E-07 15965 TMT1-6 86.213 76.93 139.2 159.27 94.766 119.88 67.247 199.56 131 160 102 116 73 189 2 2 2 2 1 2 17482 10869 1897 10764 16864;16865 21986;21987 21987 2 LAASVPYVK Unmodified 946.54877 0.54876789 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 8 0 1 54.618 54.618 2 0.001646 15402 TMT1-7 116.25 67.495 76.963 108.49 137.56 109.1 97.529 120.87 73 109 138 109 102 116 1 1 1 1 1 1 12275 10870 2876 10765 16866 21988 21988 1 LAATNALLNSLEFTK Unmodified 1604.8774 0.87737225 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 9 0 1 78.127 78.127 3 5.7502E-08 22816 TMT1-8 106.6 69.421 108.07 130.09 120.18 102.35 104.91 128.12 102 131 123 102 109 123 1 1 1 1 1 1 41896 10871 1803 10766 16867 21989 21989 1 LAATTFISQGIPVYLFSDITPTPFVPFTVSHLK Unmodified 3606.9378 0.93779425 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 9 0 1 98.128 98.128 4 3.2882E-08 30285 TMT1-8 59.567 39.115 15.824 38.08 13.201 14.908 37.248 22.389 15 37 15 15 37 22 1 1 1 1 1 1 5531 10872 2407 10767 16868 21990 21990 1 LAAVALINAAIQK Unmodified 1294.7973 0.79727144 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 78.678 78.678 3 9.3714E-12 23102 TMT1-8 127.51 102.66 123.48 228.51 153.32 122.62 200.53 179.76 117 225 160 124 203 174 2 2 2 2 2 2 24587 10873 1139 10768 16869 21991;21992 21992 2 LAAVDATVNQVLASR Unmodified 1526.8417 0.84165545 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 7.5 0.5 1 1 71.684 71.684 3 1.412E-43 22171 TMT1-7 209.22 175.04 314.06 497.45 354.25 329.18 378.56 384.68 297 493 370 327 389 371 4 4 4 4 4 4 179170 10874 1827 10769 16870;16871 21993;21994;21995;21996 21996 4 LAAVQLLQFLAPK Unmodified 1410.8599 0.8598717 2777 Q9NXF1-2;Q9NXF1 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 0 9 0 1 90.039 90.039 3 0.0081184 27476 TMT1-8 53.252 32.35 15.748 44.342 20.816 5.5687 44.75 29.637 15 43 22 7 44 29 1 1 1 1 1 1 1689.4 10875 2777 10770 16872 21997 21997 1 LACESASSTEVSGALK Unmodified 1608.7665 0.76650118 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 5 0 1 50.354 50.354 3 4.1255E-16 14142 TMT1-4 136.6 116.48 77.126 101.38 116.29 61.816 122.2 105.24 73 102 116 65 123 102 1 1 1 1 1 1 12862 10876 647 10771 16873 21998 21998 1 LACGVIGIAQ Unmodified 1000.5376 0.53755128 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 0 4 3 1 1 67.015 67.015 2 0.00033065 20275 TMT1-6 122.79 93.123 367.16 605.58 355.26 349.21 472.76 477.94 347 598 378 347 483 461 3 3 3 3 3 3 364370 10877 392 10772 16874;16875 21999;22000;22001;22002 22001 4 LADCVSVLPADGESCPR Unmodified 1844.8397 0.83968289 2080 Q7L591;Q7L591-3 DOK3 Docking protein 3 yes no 0 0 0 0 0 4 0 1 56.72 56.72 3 7.1196E-09 16924 TMT1-3 82.007 76.504 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10878 2080 10773 16876 22003 22003 1 LADDLGFEFFEASAK Unmodified 1658.7828 0.78280317 365 O95716 RAB3D Ras-related protein Rab-3D yes yes 0 0 0 0 0 5.5 0.5 1 1 84.206 84.206 2;3 1.4063E-07 27386 TMT1-4 104.9 78.757 146.67 158.66 100.93 87.047 107.84 136.57 138 160 102 87 109 131 3 3 2 3 2 3 13992 10879 365 10774 16877;16878 22004;22005;22006 22004 3 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR Unmodified 3671.785 0.78495179 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 4.75 0.829 2 1 1 75.028 75.028 4;5 5.6789E-30 24111 TMT1-3 105.66 97.267 208.13 186.18 208.37 197.43 232.59 242.81 196 189 212 196 239 234 8 7 8 8 8 8 60326 10880 1311 10775 16879;16880;16881;16882 22007;22008;22009;22010;22011;22012;22013;22014 22007 8 LADEQLSSVIQDMAVR Unmodified 1773.8931 0.89309867 2227 Q8NFV4;Q8NFV4-4 ABHD11 Alpha/beta hydrolase domain-containing protein 11 yes no 0 0 0 0 0 5 0 1 75.243 75.243 3 0.0056357 23903 TMT1-4 40.085 20.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10881 2227 10776 16883 22015 22015 1 LADFGLAR Unmodified 861.47085 0.47085192 1538 Q00526;P24941-2;P24941;P11802-2;Q00537;P50750-2;Q00536;Q00536-3;Q07002-3;Q00537-2;Q9NYV4-3;Q00536-2;O94921;Q14004-2;Q9NYV4-2;Q9NYV4;Q07002;Q96Q40;O94921-2;Q00535-2;Q96Q40-5;O94921-3;Q96Q40-3;Q96Q40-4;P50750;Q96Q40-6;Q00534;P11802;P06493;Q00535;Q14004 CDK3;CDK2;CDK4;CDK17;CDK9;CDK16;CDK18;CDK12;CDK14;CDK13;CDK15;CDK5;CDK6;CDK1 Cyclin-dependent kinase 3;Cyclin-dependent kinase 2;Cyclin-dependent kinase 4;Cyclin-dependent kinase 17;Cyclin-dependent kinase 9;Cyclin-dependent kinase 16;Cyclin-dependent kinase 18;Cyclin-dependent kinase 12;Cyclin-dependent kinase 14;Cyclin-dependent kinase 13;Cyclin-dependent kinase 15;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 6;Cyclin-dependent kinase 1 yes no 0 0 0 0 0 6.67 0.471 1 2 56.354 56.354 2 0.0041482 15878 TMT1-6 127.12 0 638.81 1066.5 836.22 632.45 683.93 1077.4 605 1056 861 636 717 1029 3 3 3 3 3 3 143950 10882 1538 10777 16884;16885;16886 22016;22017;22018 22017 3 LADFGVAGQLTDTMAK Unmodified 1636.8131 0.81305744 1665;1682 Q13043;Q13043-2;Q13188;Q13188-2 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit no no 0 0 0 0 0 7 0 1 71.696 71.696 3 1.4597E-06 22072 TMT1-6 93.754 74.431 84.433 146.71 112.09 94.25 96.343 175.27 80 145 116 94 102 167 1 1 1 1 1 1 14057 10883 1665;1682 10778 16887 22019 22019 1 LADFGVAGQLTDTQIK Unmodified 1675.8781 0.87810054 3054;2825 Q9P289;Q9P289-2;Q9P289-3;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 6.5 0.5 1 1 69.725 69.725 3 4.5728E-20 21291 TMT1-6 159.18 122.89 223.42 297.86 248.27 194.09 284.07 331.95 211 298 255 196 291 319 3 3 3 3 3 3 56176 10884 2825;3054 10779 16888;16889 22020;22021;22022 22022 3 LADFGVLHR Unmodified 1026.5611 0.56106391 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 51.933 51.933 3 0.0011048 14262 TMT1-6 96.668 64.348 53.434 110.31 123.1 69.456 159.27 142.56 51 109 123 73 160 138 1 1 1 1 1 1 20049 10885 902 10780 16890 22023 22023 1 LADFGVSAK Unmodified 906.48108 0.48108226 325;2628 Q9H2G2-2;Q9H2G2;O94804 SLK;STK10 STE20-like serine/threonine-protein kinase;Serine/threonine-protein kinase 10 no no 0 0 0 0 0 7 0 1 56.565 56.565 3 0.0083126 16082 TMT1-6 68.846 34.843 153.84 203.59 121.41 140.4 169.79 167.85 145 203 130 138 174 162 1 1 1 1 1 1 15657 10886 2628;325 10781 16891 22024 22024 1 LADHFGGK Unmodified 843.4239 0.42390173 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383;Q9NQ29-2;Q9NQ29-3;Q9NQ29 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 0 6 0 1 39.552 39.552 3 0.010142 9976 TMT1-5 73.931 60.878 129.98 226.09 144.78 122.71 164.71 187.18 123 223 152 123 169 180 1 1 1 1 1 1 20150 10887 2414 10782 16892 22025 22025 1 LADLEALK Unmodified 871.50148 0.50148335 301 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 0 0 6 0 1 63.649 63.649 2 0.010962 19521 TMT1-5 98.523 32.72 84.902 124.27 52.251 58.83 77.063 113.99 80 123 58 58 80 109 1 1 1 1 1 1 8266.2 10888 301 10783 16893 22026 22026 1 LADLFGWSQLIYNHITTR Unmodified 2147.1164 0.11637375 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 0 9 0 1 89.953 89.953 3 2.1969E-09 27463 TMT1-8 95.094 66.225 23.298 36.384 20.854 14.579 30.484 6.5921 22 36 22 15 30 7 1 1 1 1 1 1 4631.6 10889 1023 10784 16894 22027 22027 1 LADLLGK Unmodified 728.44324 0.44324019 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 65.139 65.139 2 0.032904 19601 TMT1-7 89.369 34.583 169.85 180.66 155.29 137.78 202.2 141.34 160 183 160 138 204 138 1 1 1 1 1 1 20686 10890 1763 10785 16895 22028 22028 1 LADQAVR Unmodified 771.4239 0.42390173 2849 Q9UBW5;Q9UBW5-3 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 3.5 0.5 1 1 32.971 32.971 2 0.0083257 8512 TMT1-2 117.18 4.0406 176.88 246.81 179.87 200.33 169.12 320.3 167 246 189 196 181 305 2 2 2 2 2 2 101180 10891 2849 10786 16896;16897 22029;22030 22029 2 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER Unmodified 3389.6173 0.61728152 1491;2068;2510 P68363;Q71U36-2;Q71U36;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 0 9 0 1 85.902 85.902 4 1.1465E-10 25859 TMT1-8 67.064 52.36 23.087 51.987 43.092 28.745 20.394 37.794 22 51 44 29 22 36 1 1 1 1 1 1 22771 10892 1491;2068;2510 10787 16898 22031 22031 1 LADQIFAYYK Unmodified 1230.6285 0.62847478 2079;2399 Q7L576;Q7L576-2;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 8 0 2 70.459 70.459 2;3 0.00070206 21702 TMT1-7 95.573 71.824 169.46 224.92 182.67 167.93 197.64 203.3 160 225 189 167 203 196 2 2 2 2 2 2 27532 10893 2079;2399 10788 16899;16900 22032;22033 22033 2 LADVDKDGLLDDEEFALANHLIK Unmodified 2553.2962 0.29624819 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 5.67 0.471 1 2 74.413 74.413 4;5 2.0036E-17 23707 TMT1-4 104.63 85.253 497.16 775.58 544.85 488.65 535.42 690.41 470 769 569 486 556 662 4 4 4 4 4 4 89269 10894 2654 10789 16901;16902;16903 22034;22035;22036;22037 22035 4 LAEAQIEELR Unmodified 1170.6245 0.62445203 2720 Q9NR28-2;Q9NR28-3;Q9NR28 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 53.472 53.472 2 0.00018166 16573 TMT1-2 130.79 109.11 177.02 215.9 182.42 184.79 173.3 249.83 167 217 189 182 182 239 2 2 2 2 2 2 36530 10895 2720 10790 16904;16905 22038;22039 22039 2 LAEDAPNFDGPAAEGQPGQK Unmodified 2010.9283 0.9282982 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 4 0 1 54.296 54.296 3 7.6977E-09 15969 TMT1-3 74.325 49.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10896 1501 10791 16906 22040 22040 1 LAEDEAFQR Unmodified 1077.5091 0.50908792 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 44.4 44.4 2 0.00067918 12697 TMT1-1 131.06 99.126 84.869 132.81 50.669 82.854 83.287 113.82 80 131 58 80 87 109 1 1 1 1 1 1 13813 10897 1833 10792 16907 22041 22041 1 LAEDILNTMFDTSYSK Unmodified 1846.8659 0.86588087 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 7 0 1 91.828 91.828 3 6.4453E-12 29768 TMT1-6 125.52 108.3 46.702 62.268 32.96 45.365 40.554 68.133 44 62 36 44 43 65 2 2 2 2 2 2 10410 10898 1666 10793 16908 22042;22043 22043 2 LAEDVQR Unmodified 829.42938 0.42938104 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 2 0 1 34.723 34.723 2 0.017734 8860 TMT1-1 99.375 32.382 123.04 144.02 117.21 148.49 160.04 227.82 116 145 123 145 167 218 1 1 1 1 1 1 23272 10899 3051 10794 16909 22044 22044 1 LAEDVSDQLAQQLQK Unmodified 1684.8632 0.86317875 2062 Q6ZS81-2;Q6ZS81-3;Q6ZS81-5;Q6ZS81-4;Q6ZS81 WDFY4 WD repeat- and FYVE domain-containing protein 4 yes no 0 0 0 0 0 5 0 1 70.424 70.424 3 0.0037001 22010 TMT1-4 43.69 24.367 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10900 2062 10795 16910 22045 22045 1 LAEEESCREDVTR Unmodified 1592.71 0.71004893 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 1 2 0 1 33.65 33.65 3 0.01646 8424 TMT1-1 56.938 40.178 30.572 58.955 41.579 52.474 42.044 45.704 29 58 44 51 44 44 1 1 1 1 1 1 5239.3 10901 2327 10796 16911 22046 22046 1 LAEELGR Unmodified 786.42357 0.42356738 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 3 0 1 43.134 43.134 2 0.022657 12452 TMT1-2 95.541 27.229 53.896 80.299 70.985 65.355 77.569 90.529 51 80 73 65 80 87 1 1 1 1 1 1 66967 10902 965 10797 16912 22047 22047 1 LAEEQEVNK Unmodified 1058.5244 0.52440364 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 41.026 41.026 3 7.6686E-05 11644 TMT1-2 106.68 46.247 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10903 3003 10798 16913;16914 22048;22049 22049 2 LAEGVQLLCLIDK Unmodified 1470.8116 0.81160087 2585 Q9BZH6 WDR11 WD repeat-containing protein 11 yes yes 0 0 0 0 0 8 0 1 82.79 82.79 3 0.032232 26435 TMT1-7 45.992 28.271 23.242 28.672 36.9 29.105 20.89 22.856 22 29 37 29 22 22 1 1 1 1 1 1 2925.8 10904 2585 10799 16915 22050 22050 1 LAEIGAPIQGNREELVER Unmodified 1993.0593 0.059252799 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 1 4 0 1 52.765 52.765 3 8.124E-05 15390 TMT1-3 77.08 30.116 77.292 85.657 101.62 72.192 81.908 168.22 73 87 102 73 87 160 1 1 1 1 1 1 19860 10905 1704 10800 16916 22051 22051 1 LAEIIWQNR Unmodified 1141.6244 0.62439245 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 8 0 1 65.1 65.1 2 0.00068357 19553 TMT1-7 89.355 46.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10906 1093;1253 10801 16917 22052 22052 1 LAEISDVWEEMK Unmodified 1448.6857 0.68573166 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 78.184 78.184 3 0.045607 25124 TMT1-4 42.843 28.281 30.811 28.319 27.49 45.651 42.651 37.159 29 29 29 44 44 36 1 1 1 1 1 1 22733 10907 1546 10802 16918 22053 22053 1 LAELEEFINGPNNAHIQQVGDR Unmodified 2463.2142 0.21424989 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5.33 0.471 2 1 70.328 70.328 3;4 1.585E-17 21995 TMT1-4 109.32 95.011 131.94 112.99 91.68 58.001 54.344 137.03 124 116 94 59 59 130 3 3 3 3 3 3 34857 10908 1540 10803 16919;16920;16921 22054;22055;22056 22055 3 LAELGLHLK Unmodified 992.60187 0.6018661 2819 Q9P1Z2-2;Q9P1Z2-3;Q9P1Z2;Q9P1Z2-4 CALCOCO1 Calcium-binding and coiled-coil domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 58.182 58.182 3 0.0023981 16839 TMT1-7 85.676 65.346 37.891 81.65 54.712 66.316 78.038 75.591 36 80 58 65 80 73 1 1 1 1 1 1 6001.2 10909 2819 10804 16922 22057 22057 1 LAELLDLSK Unmodified 1000.5805 0.58046195 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 7 0 1 75.275 75.275 2 0.00029115 23453 TMT1-6 141.88 77.613 482.39 556.96 507.41 410.7 323.88 588.78 455 562 519 409 347 561 2 2 2 2 2 2 91307 10910 288 10805 16923 22058;22059 22058 2 LAELLVSVLEQGLPPSHR Unmodified 1957.0997 0.09966105 2705 Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 RIC8A Synembryn-A yes no 0 0 0 0 0 9 0 1 93.564 93.564 3 1.0915E-08 28712 TMT1-8 85.046 70.356 23.368 21.469 21.731 14.985 6.0905 15.816 22 22 22 15 7 15 1 1 1 1 1 1 3940.9 10911 2705 10806 16924 22060 22060 1 LAELSDYRR Unmodified 1121.5829 0.58292157 2443 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 1 5 0 1 42.418 42.418 3 0.00104 11008 TMT1-4 101.9 56.815 100.19 77.567 47.701 52.119 41.547 60.642 94 80 51 51 44 58 1 1 1 1 1 1 4453.8 10912 2443 10807 16925 22061 22061 1 LAEMPADSGYPAYLGAR Unmodified 1780.8454 0.8454202 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 5 0 1 62.444 62.444 2 0.00010242 18877 TMT1-4 63.091 39.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10913 1057 10808 16926 22062 22062 1 LAENFCVCHLATGDMLR Unmodified 2005.9172 0.91722171 1303 P54819-2;P54819;P54819-3;P54819-5 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 7 0 1 61.671 61.671 3 8.2862E-06 18127 TMT1-6 86.479 71.225 30.235 81.762 78.928 57.791 47.809 83.916 29 80 80 58 51 80 1 1 1 1 1 1 13885 10914 1303 10809 16927 22063 22063 1 LAENNIQPIFAVTSR Unmodified 1671.8944 0.8944193 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 1 65.103 65.103 3 0.0016189 19547 TMT1-6 65.421 43.753 37.588 104.55 86.184 33.399 43.214 37.143 36 102 87 36 44 36 1 1 1 1 1 1 43723 10915 485 10810 16928 22064 22064 1 LAEQAER Unmodified 815.41373 0.41373097 1471;1422;1411;1588;909;984;985 P27348;P31946;P31946-2;P63104;P31947-2;P31947;P61981;P62258;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 0 2 0.816 1 1 1 28.774 28.774 2 2.2693E-12 6565 TMT1-1 184.89 78.477 3478 4509.1 3865.9 2838.6 3786.8 4783.8 3284 4519 3956 2873 3902 4589 4 4 4 4 4 4 861580 10916 909;984;1471;985;1411;1422;1588 10811 16929;16930;16931 22065;22066;22067;22068 22066 4 LAEQEAHYAVR Unmodified 1285.6415 0.64149908 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 3 0 1 36.317 36.317 3 2.4866E-17 9827 TMT1-2 184.27 132.7 138.35 232.48 174.42 152.05 196.35 201.2 131 230 181 152 201 194 1 1 1 1 1 1 47432 10917 2753 10812 16932 22069 22069 1 LAETLGR Unmodified 758.42865 0.42865276 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 41.631 41.631 2 0.001889 10705 TMT1-4 144.9 33.088 1361.3 1548.3 1629.3 1360.7 1464.4 2382.3 1285 1567 1654 1359 1538 2274 2 2 2 2 2 2 174650 10918 1149 10813 16933;16934 22070;22071;22072 22071 3 LAETQEEISAEVAAK Unmodified 1587.7992 0.79918151 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 0 3 0.707 1 2 1 61.741 61.741 3 1.4605E-15 19873 TMT1-2 140.03 121.67 184.81 331.82 217.9 275.75 280.88 285.13 175 327 232 269 290 275 4 4 4 4 4 4 27725 10919 2414 10814 16935;16936;16937;16938 22073;22074;22075;22076;22077 22074 5 LAETVFNFQEK Unmodified 1324.6663 0.66631685 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 67.358 67.358 3 0.00048668 20376 TMT1-6 66.262 43.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10920 1763 10815 16939 22078 22078 1 LAETYLHR Unmodified 1001.5294 0.52942943 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 0 5 0 1 39.775 39.775 3 0.0011783 9942 TMT1-4 110.12 32.193 45.082 119.1 76.649 56.961 99.136 113.37 43 116 80 58 101 109 1 1 1 1 1 1 10986 10921 895 10816 16940 22079 22079 1 LAEVALAYAK Unmodified 1047.5964 0.59644637 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 7.5 0.5 1 1 65.583 65.583 2 4.4166E-05 19633 TMT1-6 147.51 101.79 375.8 468.08 462.17 392.24 402.72 571.61 355 471 471 391 421 547 4 4 4 4 4 4 62530 10922 688 10817 16941;16942 22080;22081;22082;22083 22080 4 LAEVEAALEK Unmodified 1071.5812 0.58119023 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 2 66.885 66.885 2;3 0.00010667 20622 TMT1-4 113.93 69.063 216.49 376.78 264.99 223.29 364.01 371.24 205 372 276 225 370 358 2 2 2 2 2 2 40364 10923 1833 10818 16943;16944 22084;22085 22085 2 LAEVIQK Unmodified 799.48035 0.48035398 2157 Q8IZ83;Q8IZ83-3;Q8IZ83-2 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 6 0 1 52.136 52.136 2 0.0291 14978 TMT1-5 91.065 28.223 122.15 287.24 145.91 137.27 258.81 260.18 116 280 157 138 262 251 1 1 1 1 1 1 15462 10924 2157 10819 16945 22086 22086 1 LAEVSQNIEK Unmodified 1129.5979 0.59790293 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 5 0 1 50.44 50.44 2 0.0082015 14203 TMT1-4 86.879 43.694 153.94 160.7 140.58 132.17 140.17 158.03 145 163 145 131 145 152 1 1 1 1 1 1 15993 10925 2449 10820 16946 22087 22087 1 LAEYHAK Unmodified 830.42865 0.42865276 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 5 0 1 34.474 34.474 3 0.0078082 7810 TMT1-4 86.086 52.009 99.857 99.313 84.796 64.556 76.286 128.94 94 101 87 65 80 123 1 1 1 1 1 1 17422 10926 431 10821 16947 22088 22088 1 LAFDMATNAACASLLK Unmodified 1695.8324 0.83241267 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 9 0 1 76.404 76.404 3 3.2101E-06 22161 TMT1-8 86.378 61.819 53.828 95.221 69.691 74.322 69.827 90.749 51 94 73 73 73 87 1 1 1 1 1 1 9870 10927 2324 10822 16948 22089 22089 1 LAFESENINSEIHCDR Unmodified 1932.8636 0.86358946 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 3.5 0.5 1 1 51.346 51.346 3 5.1859E-30 15847 TMT1-2 191.96 177.03 100.44 169.11 107.83 157.9 154.16 142.71 95 167 116 153 159 138 2 2 2 2 2 2 38071 10928 1684 10823 16949;16950 22090;22091 22090 2 LAFLNVQAAEEALPR Unmodified 1640.8886 0.88860564 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7.33 0.471 2 1 75.569 75.569 2;3 1.0662E-17 23679 TMT1-6 151.54 132.15 138.95 143.47 149.66 123.32 116.99 174.68 131 146 152 123 123 167 3 3 3 3 3 3 51769 10929 1112 10824 16951;16952;16953 22092;22093;22094;22095 22093 4 LAFTDVSIK Unmodified 992.55425 0.5542472 812 P20591 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 63.785 63.785 2 0.00035885 19039 TMT1-7 105.52 51.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10930 812 10825 16954 22096 22096 1 LAGAFSSDTSFF Unmodified 1248.5663 0.56626845 1819 Q15042-3;Q15042 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes no 0 0 0 0 0 7 0 1 84.532 84.532 2 6.6296E-05 27017 TMT1-6 108.09 103.3 86.448 43.487 41.369 71.705 66.273 75.927 81 47 44 69 69 73 2 2 2 2 2 2 8753.7 10931 1819 10826 16955 22097;22098 22097 2 LAGAQAIFEAQQLAGVR Unmodified 1741.9475 0.9475175 2137 Q8IV04 TBC1D10C Carabin yes yes 0 0 0 0 0 8 0 1 72.003 72.003 3 6.046E-09 22254 TMT1-7 104.16 81.961 37.856 89.109 54.238 66.906 48.196 60.453 36 87 58 65 51 58 1 1 1 1 1 1 11244 10932 2137 10827 16956 22099 22099 1 LAGATLLIFANK Unmodified 1230.7336 0.73360855 1034 P36404 ARL2 ADP-ribosylation factor-like protein 2 yes yes 0 0 0 0 0 9 0 1 77.084 77.084 3 0.00059393 22447 TMT1-8 73.781 53.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10933 1034 10828 16957 22100 22100 1 LAGDESAD Unmodified 776.31883 0.31882754 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 3.75 3.11 1 1 1 1 38.891 38.891 2 0.0058584 9032 TMT 1-phospho 113.08 72.397 1323.6 1499.5 1513 1296.5 1821.4 1210.2 1249 1517 1541 1300 1838 1184 6 6 6 6 6 6 457670 10934 448 10829 16958;16959;16960;16961 22101;22102;22103;22104;22105;22106 22102 6 LAGESESNLR Unmodified 1074.5306 0.53055165 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2.5 0.5 1 1 36.642 36.642 2 2.2093E-06 9636 TMT1-1 159.58 145.29 345.63 371.37 386.03 316.37 494.04 450.68 326 377 392 319 501 436 4 4 4 4 4 4 97705 10935 1311 10830 16962;16963 22107;22108;22109;22110 22107 4 LAGESESNLRK Unmodified 1202.6255 0.62551466 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 1 5 0 1 36.146 36.146 3 0.0016793 8504 TMT1-4 86.313 44.271 252.97 338.67 297.22 299.78 262.57 329.36 239 339 307 295 275 316 1 1 1 1 1 1 29064 10936 1311 10831 16964 22111 22111 1 LAGFLDLTEQEFR Unmodified 1537.7777 0.77765821 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 6 0 1 81.691 81.691 3 0.02091 26547 TMT1-5 50.314 33.682 15.822 29.439 20.96 22.398 21.198 22.847 15 29 22 22 22 22 1 1 1 1 1 1 7819.4 10937 2953 10832 16965 22112 22112 1 LAGGDWFTSR Unmodified 1108.5302 0.53015772 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 7.5 0.5 1 1 59.954 59.954 2 0.0036879 17526 TMT1-7 95.358 66.846 299.52 462.04 303.58 277.16 283.01 434.31 283 458 319 275 297 415 2 2 2 2 2 2 63503 10938 956 10833 16966;16967 22113;22114 22114 2 LAGGHGVSASR Unmodified 1010.5257 0.52574104 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 7.5 1.5 1 1 24.975 24.975 3 1.5084E-05 4139 TMT1-8 106.62 58.77 37.056 34.897 54.329 40.824 39.936 61.754 35 36 54 41 42 59 2 2 2 2 2 2 4321.4 10939 3042 10834 16968;16969 22115;22116 22116 2 LAGGNDVGIFVAGIQEGTSAEQEGLQEGDQILK Unmodified 3342.6579 0.65794359 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 4.5 0.5 1 1 84.225 84.225 4 0.00015714 27350 TMT1-4 45.56 22.167 37.906 66.582 64.963 50.804 56.757 45.921 36 66 66 51 58 44 2 2 2 2 2 1 10723 10940 2852 10835 16970;16971 22117;22118 22118 2 LAGIINFQRPK Unmodified 1255.7401 0.74009091 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 1 9 0 1 56.814 56.814 3 0.0029139 14316 TMT1-8 70.412 25.251 84.493 155.51 94.586 135.18 125.89 143.52 80 153 102 131 131 138 1 1 1 1 1 1 35201 10941 55 10836 16972 22119 22119 1 LAGLFNEQR Unmodified 1046.5509 0.55089316 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 7 0 1 56.631 56.631 2 0.00057459 16121 TMT1-6 133.98 68.097 345.77 412.77 327.36 290.19 386.75 381.25 326 415 339 290 395 368 2 2 2 2 2 2 36633 10942 3017 10837 16973 22120;22121 22121 2 LAGSLLTQALESHAEGFR Unmodified 1898.985 0.98502522 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 8 0 1 68.989 68.989 3 0.00035359 21062 TMT1-7 65.467 47.01 115.56 144.62 111.65 103.28 82.605 106.37 109 145 116 102 87 102 1 1 1 1 1 1 15676 10943 1736 10838 16974 22122 22122 1 LAGTQPLEVLEAVQR Unmodified 1622.8992 0.89917033 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 5.5 0.5 1 1 71.063 71.063 3 7.9114E-11 22458 TMT1-5 124.09 99.374 191.94 254.53 166.26 153.88 183.12 218.63 181 254 175 153 189 210 3 3 3 3 3 3 69538 10944 845 10839 16975;16976 22123;22124;22125 22125 3 LAGVTALSCWLPLR Unmodified 1555.8545 0.85446874 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 9 0 2 83.288 83.288 2;3 2.3679E-17 24826 TMT1-8 152.47 125.37 84.416 107.81 148.03 68.437 76.364 121.48 80 109 146 72 80 116 3 3 3 3 3 3 39193 10945 291 10840 16977;16978 22126;22127;22128 22128 3 LAHALLHTQTK Unmodified 1231.7037 0.70370541 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 9 0 1 39.028 39.028 4 0.0001619 7755 TMT1-8 90.263 67.876 46.576 50.045 64.506 58.059 79.224 52.105 44 51 65 58 80 51 1 1 1 1 1 1 3887.1 10946 2631 10841 16979 22129 22129 1 LAHEIEALK Unmodified 1022.576 0.57604528 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 5 0 1 51.384 51.384 3 0.0064964 14572 TMT1-4 72.607 42.622 84.533 154.54 88.761 72.913 84.294 97.799 80 152 94 73 87 94 1 1 1 1 1 1 7797.8 10947 208 10842 16980 22130 22130 1 LAHEVGWK Unmodified 938.4974 0.49740102 1071 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 0 7 0 1 44.257 44.257 3 0.0011755 11203 TMT1-6 110.31 70.265 268.7 421.8 288.93 323.56 419.14 337.69 254 418 305 319 426 328 2 2 2 2 2 2 68219 10948 1071 10843 16981 22131;22132 22131 2 LAHVGEVR Unmodified 879.49265 0.49265 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 5.5 0.5 1 1 31.335 31.335 3 1.304E-05 6615 TMT1-4 128.61 49.992 30.631 35.375 51.673 27.657 51.064 29.457 29 36 51 29 51 29 1 1 1 1 1 1 1756.3 10949 1222 10844 16982;16983 22133;22134 22133 2 LAHYIDR Unmodified 886.4661 0.4661009 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 5 0 1 36.719 36.719 3 0.0016867 8772 TMT1-4 115.46 52.481 114.8 228.85 168.16 130.06 164.62 271.4 109 225 174 131 172 259 1 1 1 1 1 1 26682 10950 1577 10845 16984 22135 22135 1 LAHYNKR Unmodified 900.49298 0.49298435 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q6DRA6;Q6DN03;Q8N257;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC;HIST3H2BB;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 0 1 6 3.56 1 1 1 26.133 26.133 3 0.0029958 4472 TMT1-7 111.81 65.685 3464.8 5649.3 3498.5 4134 4415.4 5915 3275 5584 3733 4049 4597 5667 7 7 7 7 7 7 184080 10951 239;524;2168;2498 10846 16985;16986;16987 22136;22137;22138;22139;22140;22141;22142 22137 7 LAIKLPDDQIPK Unmodified 1349.7919 0.79185171 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 1 7.5 0.5 1 1 59.82 59.82 3 0.00010372 17423 TMT1-6 101.6 91.256 314.25 417.03 390.6 277.16 239.38 395.05 297 418 397 279 254 377 2 2 2 2 2 2 31872 10952 1559 10847 16988;16989 22143;22144 22143 2 LAILGIHNEVSK Unmodified 1292.7452 0.74523587 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 6.8 2.93 1 3 1 56.206 56.206 3;4 6.184E-18 14108 TMT1-8 176.97 116.58 7485.5 9176.1 8238 5964.6 7945.2 10606 7065 9228 8403 6043 8206 10162 9 9 9 9 9 9 1406800 10953 672 10848 16990;16991;16992;16993;16994 22145;22146;22147;22148;22149;22150;22151;22152;22153 22153 9 LAILYAK Unmodified 790.49528 0.49527576 1224 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 0 9 0 1 62.129 62.129 2 0.0091242 16530 TMT1-8 126.05 65.04 603.05 403.3 556.24 552.32 542.97 811.72 567 426 562 545 570 776 2 2 2 2 2 2 65272 10954 1224 10849 16995 22154;22155 22154 2 LAIQEALSMMVGAYSTLEGAQR Unmodified 2338.1661 0.16610241 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 9 0 1 103.11 103.11 3 1.6996E-06 32206 TMT1-8 64.522 43.937 7.4543 6.8835 3.6983 4.02 6.9978 4.0643 7 7 4 4 7 4 1 1 1 1 1 1 1702.1 10955 1994 10850 16996 22156 22156 1 LAIWDTAGQER Unmodified 1258.6306 0.63060004 2700 Q9NP72 RAB18 Ras-related protein Rab-18 yes yes 0 0 0 0 0 6 0 1 58.138 58.138 3 0.00033454 17360 TMT1-5 68.069 44.464 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10956 2700 10851 16997 22157 22157 1 LAKPLSSLTPLIMAAK Unmodified 1652.9899 0.98989959 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 1 9 0 1 73.272 73.272 4 1.3658E-05 20933 TMT1-8 79.771 64.232 68.462 109.3 123.03 70.746 90.917 121.06 65 109 123 73 94 116 1 1 1 1 1 1 6248.2 10957 1680 10852 16998 22158 22158 1 LALADAGDTVEDANFVEAMADAGILR Unmodified 2647.2799 0.27994619 2829 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 92.711 92.711 4 0.00014358 30607 TMT1-3 52.79 50.415 0 7.3317 6.9578 3.9573 0 7.462 0 7 7 4 0 7 0 1 1 1 0 1 963.13 10958 2829 10853 16999 22159 22159 1 LALDMEISAYR Unmodified 1280.6435 0.64347291 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 5.33 0.471 2 1 65.976 65.976 2;3 3.205E-06 20272 TMT1-4 129.28 90.924 146.08 204.5 161.88 130.36 168.75 211.58 138 204 167 131 174 203 3 3 3 3 3 3 25812 10959 816 10854 17000;17001;17002 22160;22161;22162 22161 3 LALDYGIK Unmodified 891.50657 0.50656873 1366 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 0 7 0 2 59.63 59.63 2 0.0025546 17079 TMT1-6 136.11 0 948.27 1592.5 1219.2 983.67 961.68 1535.3 898 1576 1260 983 1013 1466 3 3 3 3 3 3 163060 10960 1366 10855 17003;17004 22163;22164;22165 22163 3 LALEGVEK Unmodified 857.48583 0.48583328 1862 Q15555-5;Q15555-3;Q15555;Q15555-4 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 5.5 0.5 1 1 52.825 52.825 2 0.0015478 15216 TMT1-5 141.39 19.261 1511.7 2042.9 1727.2 1369.1 1465.1 1863.1 1428 2043 1773 1372 1522 1787 3 3 3 3 3 3 180840 10961 1862 10856 17005;17006 22166;22167;22168 22168 3 LALETALMYGAK Oxidation (M) 1295.6795 0.67952407 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 7.67 0.471 1 2 67.081 67.081 2;3 6.7498E-06 20369 TMT1-7 121.6 105.4 323.63 375.48 292.4 302 276.19 386.54 305 378 305 297 290 370 4 4 4 4 4 4 74156 10962 393 10857 17007;17008;17009 22169;22170;22171;22172 22171 37 4 LALETALMYGAK Unmodified 1279.6846 0.68460945 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 8 0.707 1 2 1 72.029 72.029 2;3 6.4966E-25 22241 TMT1-7 194.06 153.06 1870.5 2567.4 1750.4 1583.1 1750 2816.5 1765 2559 1834 1574 1835 2689 5 5 5 5 5 5 566530 10963 393 10857 17010;17011;17012;17013 22173;22174;22175;22176;22177;22178 22177 6 LALETTVLVESYTLPDGR Unmodified 1976.0466 0.046622427 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 81.077 81.077 3 5.7655E-25 26114 TMT1-4 147.64 119.55 138.46 211.17 175.29 185.61 210.67 257.29 131 210 182 183 218 247 4 4 4 4 4 4 69614 10964 1380 10858 17014;17015 22179;22180;22181;22182 22179 4 LALFNPDVCWDR Unmodified 1504.7133 0.71328381 73 O00483 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 0 0 0 0 0 7.33 0.471 2 1 73.989 73.989 2;3 2.0739E-08 23020 TMT1-7 141.44 96.679 129.97 189.37 177.4 168.53 182.15 227.19 123 189 182 167 189 218 3 3 3 3 3 3 31084 10965 73 10859 17016;17017;17018 22183;22184;22185;22186 22185 4 LALGIPLPELR Unmodified 1190.7387 0.73869393 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 9 0 1 76.678 76.678 2 0.00012976 22282 TMT1-8 105.52 71.517 30.638 44.028 43.203 36.126 34.419 45.922 29 44 44 36 36 44 1 1 1 1 1 1 8761.9 10966 917 10860 17019 22187 22187 1 LALHELK Unmodified 822.49634 0.49633839 2881 Q9UIJ7;Q9UIJ7-2 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 7 0 1 44.905 44.905 3 0.0081656 11486 TMT1-6 85.265 16.843 564.16 790.89 631.7 453.97 651.35 772.39 533 789 649 461 668 742 1 1 1 1 1 1 54809 10967 2881 10861 17020 22188 22188 1 LALIICNEEFDSIPR Unmodified 1788.908 0.90802046 938 P29466-2;P29466;P29466-3;P29466-4 CASP1 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10 yes no 0 0 0 0 0 6 0 2 77.529 77.529 2;3 0.00039071 24957 TMT1-5 75.764 60.973 85.173 55.951 64.692 65.849 71.28 59.794 80 59 66 65 73 58 2 2 2 2 2 2 16416 10968 938 10862 17021;17022 22189;22190 22189 2 LALILHQLGR Unmodified 1132.7081 0.7080625 2104 Q86TV6;Q86TV6-2 TTC7B Tetratricopeptide repeat protein 7B yes no 0 0 0 0 0 9 0 1 65.077 65.077 3 0.0010481 17713 TMT1-8 86.67 86.67 30.849 28.426 20.939 22.542 13.606 30.526 29 29 22 22 15 29 1 1 1 1 1 1 4262.7 10969 2104 10863 17023 22191 22191 1 LALLEEAR Unmodified 913.52328 0.52328142 1983 Q5TZA2-2;Q5TZA2 CROCC Rootletin yes no 0 0 0 0 0 5 0 1 56.247 56.247 2 0.002037 16419 TMT1-4 138.83 0 115.34 222.8 82.435 119.51 125.55 174.44 109 218 94 116 131 167 1 1 1 1 1 1 35736 10970 1983 10864 17024 22192 22192 1 LALLLSQFVGSQSVR Unmodified 1616.925 0.92499115 1278 P52948-6;P52948-2;P52948-5;P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 0 0 9 0 1 87.831 87.831 3 0.0018044 26601 TMT1-8 56.599 31.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10971 1278 10865 17025 22193 22193 1 LALLQVR Unmodified 811.52797 0.52797287 787 P19367-4;P19367-2;P19367;P19367-3;Q2TB90 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 0 0 0 0 0 9 0 1 58.188 58.188 2 0.00023463 15041 TMT1-8 166.22 61.279 284.23 507.81 491.33 350.41 500.62 609.32 270 503 498 356 514 585 1 1 1 1 1 1 72940 10972 787 10866 17026 22194 22194 1 LALQALTEK Unmodified 985.5808 0.5807963 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 8 0 1 61.896 61.896 2 0.00024842 18258 TMT1-7 143.7 56.87 76.927 186.09 77.934 104.31 134.64 143.27 73 181 87 102 138 138 1 1 1 1 1 1 15578 10973 1609 10867 17027 22195 22195 1 LALQAQPVPDELVTK Unmodified 1620.9087 0.90867238 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 6 0 1 65.31 65.31 3 0.0012879 20230 TMT1-5 66.246 56.115 69.05 72.083 55.801 51.237 62.769 83.489 65 73 58 51 65 80 1 1 1 1 1 1 9993.4 10974 736 10868 17028 22196 22196 1 LALQLHPDRNPDDPQAQEK Unmodified 2184.0923 0.092343841 2846 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 1 5 0 1 44.632 44.632 4 1.3615E-13 11886 TMT1-4 113.86 98.435 107.85 154.3 136.81 60.734 114.67 112.92 102 154 138 65 116 109 1 1 1 1 1 1 16268 10975 2846 10869 17029 22197 22197 1 LALTTAEFLAYQCEK Unmodified 1756.8706 0.87057232 828 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 0 7 0 1 74.899 74.899 3 3.5712E-17 23299 TMT1-6 143.56 134.15 107.71 136.63 175.57 113.22 164.85 134.94 102 138 175 116 167 131 2 2 2 2 2 2 12574 10976 828 10870 17030 22198;22199 22198 2 LALVTGGEIASTFDHPELVK Unmodified 2096.1154 0.11537069 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 6.8 0.748 2 2 1 72.879 72.879 3;4 2.5477E-45 22497 TMT1-6 187.56 173.55 290.18 498.29 400.61 358.7 405.18 544.89 275 493 414 357 421 522 7 7 7 7 7 7 75050 10977 1504 10871 17031;17032;17033;17034;17035 22200;22201;22202;22203;22204;22205;22206 22202 7 LALVYCSLIK Unmodified 1178.6733 0.67331648 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 2 74.373 74.373 2;3 3.9698E-12 21353 TMT1-8 174.85 113.87 153.56 180.17 186.81 136.96 145.67 204.78 145 182 189 138 152 196 2 2 2 2 2 2 30747 10978 2066 10872 17036;17037 22207;22208 22207 2 LALYNLLAYVK Unmodified 1279.754 0.75400964 1694 Q13325-2;Q13325 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 yes no 0 0 0 0 0 9 0 1 87.346 87.346 3 0.0002207 26391 TMT1-8 90.108 60.635 38.289 35.27 27.026 45.847 33.716 53.404 36 36 29 44 36 51 1 1 1 1 1 1 4415.2 10979 1694 10873 17038 22209 22209 1 LAMDEIFQKPFQTLMFLVR Unmodified 2326.2218 0.2217668 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 1 9 0 1 97.772 97.772 3 0.040337 30154 TMT1-8 35.64 22.184 15.948 22.235 5.8528 6.8852 22.168 15.357 15 22 7 7 22 15 1 1 1 1 1 1 2700.1 10980 2007 10874 17039 22210 22210 1 LAMEETFLKPFQSLIFLVR Unmodified 2281.2544 0.25444713 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 1 9 0 1 96.362 96.362 3 0.0020757 29721 TMT1-8 50.188 35.614 46.753 19.239 60.83 36.311 26.825 53.601 44 22 59 37 29 51 2 2 2 2 2 2 2809.5 10981 2284 10875 17040 22211;22212 22211 2 LAMQEFMILPVGAANFR Oxidation (M) 1922.9747 0.97466023 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 0 0 9 0 2 78.485 78.485 3 0.0066828 22555 TMT1-8 51.193 32.598 93.428 77.114 102.04 72.403 69.366 106.75 88 80 102 73 73 102 2 2 2 2 2 2 31851 10982 514 10876 17041;17042 22213;22214 22213 76;77 2 LAMQEFMILPVGAANFR Unmodified 1906.9797 0.97974561 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 9 0 2 85.655 85.655 3;4 3.0215E-14 25799 TMT1-8 116.06 97.694 162.07 226.86 159.78 145.66 175.57 205.8 153 226 167 145 181 196 3 3 3 3 3 2 136290 10983 514 10876 17043;17044 22215;22216;22217 22216 3 LAMQEFMILPVGAESFR Unmodified 1937.9743 0.97432588 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 8 0 1 86.261 86.261 3 3.2017E-05 27687 TMT1-7 78.848 54.561 21.211 28.059 18.102 14.95 19.447 22.897 20 28 19 15 20 22 1 1 1 1 1 1 10518 10984 581 10877 17045 22218 22218 1 LANELPDWFQTAK Unmodified 1531.7671 0.76709352 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 7 0 1 74.482 74.482 3 0.00024894 23209 TMT1-6 86.405 66.727 108.01 121.27 138.78 61.06 91.105 128.52 102 123 138 65 94 123 1 1 1 1 1 1 37870 10985 2852 10878 17046 22219 22219 1 LANQAADYFGDAFK Unmodified 1529.7151 0.71505795 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6 0 1 69.501 69.501 2 1.0344E-09 21828 TMT1-5 122.46 98.608 115.85 90.374 109.48 55.121 92.954 82.628 109 94 109 58 94 80 1 1 1 1 1 1 12454 10986 2267 10879 17047 22220 22220 1 LANQFAIYKPVTDFFLQLVDAGK Unmodified 2597.3894 0.38936071 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 97.569 97.569 5 0.0096945 30086 TMT1-8 39.659 29.511 23.384 29.067 12.672 38.079 27.294 37.597 22 29 15 36 29 36 1 1 1 1 1 1 1336.9 10987 1101 10880 17048 22221 22221 1 LANVMMGPYR Unmodified 1150.5627 0.56272017 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 9 0 1 57.658 57.658 2 3.5116E-12 14846 TMT1-8 176.09 101.83 244.49 469.23 349.98 227.87 315.72 492.01 232 462 360 233 328 470 2 2 2 2 2 2 43363 10988 776 10881 17049 22222;22223 22223 2 LANVMMGPYRQDLLAK Unmodified 1818.9484 0.94844548 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 9 0 1 64.747 64.747 3 0.0003908 17578 TMT1-8 61.226 22.851 108.44 91.181 91.053 104.1 104.28 144.13 102 94 94 102 109 138 1 1 1 1 1 1 12315 10989 776 10882 17050 22224 22224 1 LANVVFFPR Unmodified 1061.6022 0.60220045 2598 Q9GZP0-2;Q9GZP0 PDGFD Platelet-derived growth factor D;Platelet-derived growth factor D, latent form;Platelet-derived growth factor D, receptor-binding form yes no 0 0 0 0 0 9 0 1 67.366 67.366 2 0.0049658 18636 TMT1-8 84.916 62.024 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10990 2598 10883 17051 22225 22225 1 LAPEFAK Unmodified 774.42759 0.42759012 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 6.5 0.5 1 1 51.475 51.475 2 0.0079842 14145 TMT1-6 121.29 35.18 2149.9 3132.9 2821.5 2079.3 2832.1 3596.9 2034 3125 2877 2105 2917 3450 2 2 2 2 2 2 449250 10991 945 10884 17052;17053 22226;22227 22227 2 LAPEYEAAATR Unmodified 1190.5932 0.5931519 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 3.5 0.5 1 1 43.642 43.642 2;3 8.4058E-17 12857 TMT1-2 187.1 140.77 869.73 826.89 1001.2 674.04 739.24 1086.5 820 848 1003 684 772 1039 3 3 3 3 3 3 362280 10992 955 10885 17054;17055 22228;22229;22230 22229 3 LAPGTIVEVWK Unmodified 1211.6914 0.69140938 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 8 0 1 69.869 69.869 2 1.7478E-06 21410 TMT1-7 136.99 84.052 98.997 144.41 190.98 97.733 126.03 189.35 94 145 189 102 131 181 1 1 1 1 1 1 19433 10993 539 10886 17056 22231 22231 1 LAPITSDPTEATAVGAVEASFK Unmodified 2174.1107 0.11067925 706 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 0 5.33 0.471 2 1 76.616 76.616 3;4 4.8655E-50 24660 TMT1-5 167.97 144.64 1204.4 1570.8 1297.5 973.64 1363 1436.4 1137 1573 1332 985 1393 1384 7 7 7 7 7 7 494770 10994 706 10887 17057;17058;17059 22232;22233;22234;22235;22236;22237;22238 22237 7 LAPITYPQGLALAK Unmodified 1454.8497 0.84970094 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 0 5 4 1 1 69.573 69.573 3 2.6027E-20 19409 TMT1-8 166.7 119.74 591.25 865.52 704.53 585.76 793.99 858.93 559 862 726 588 813 827 3 3 3 3 3 3 195120 10995 717 10888 17060;17061 22239;22240;22241 22241 3 LAPLTTPKPR Unmodified 1092.6655 0.66552898 2555 Q9BW04-2;Q9BW04 SARG Specifically androgen-regulated gene protein yes no 0 0 0 0 1 9 0 1 43.444 43.444 3 0.00042428 9246 TMT1-8 101.46 70.891 61.224 118.13 69.71 42.193 92.742 106.09 58 116 73 44 94 102 1 1 1 1 1 1 5128 10996 2555 10889 17062 22242 22242 1 LAPPLVTLLSAEPELQYVALR Unmodified 2292.3093 0.30931947 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 8 0 2 95.671 95.671 3;4 1.735E-19 31204 TMT1-7 129.11 116.18 78.685 62.729 83.518 33.665 135.77 52.454 74 65 82 36 133 51 5 5 5 4 6 4 15078 10997 1637 10890 17063;17064 22243;22244;22245;22246;22247;22248 22248 6 LAPPLVTLLSGEPEVQYVALR Unmodified 2264.278 0.27801935 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 8 0 1 90.315 90.315 3 9.9911E-20 29174 TMT1-7 106.44 86.048 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10998 1467 10891 17065 22249 22249 1 LAPVPFFSLLQYE Unmodified 1522.8072 0.80716742 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 0 0 0 9 0 2 104.57 104.57 2;3 7.9385E-07 32591 TMT1-8 109.71 91.983 80.764 87.22 57.805 30.47 56.395 91.133 76 88 59 32 58 87 3 3 2 2 2 3 146400 10999 541 10892 17066;17067 22250;22251;22252 22250 3 LAQAAQSSVATITR Unmodified 1415.7732 0.77324153 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.78 2.15 1 5 2 1 50.746 50.746 2;3 9.0813E-153 14260 TMT1-6 294.41 231.53 1763.2 2317.3 2315.4 1830 2058.5 2516.7 1667 2326 2352 1836 2131 2416 13 13 13 13 13 13 2383300 11000 3010 10893 17068;17069;17070;17071;17072;17073;17074;17075;17076 22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263;22264;22265 22259 13 LAQALHEMR Unmodified 1067.5546 0.55459833 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 6 0 1 42.944 42.944 3 0.00028918 11304 TMT1-5 118.71 79.702 344.31 595.44 417.05 362.73 429.58 529.27 326 588 435 362 444 508 3 3 3 3 3 3 76220 11001 816 10894 17077 22266;22267;22268 22266 3 LAQDPFPLYPGEVLEK Unmodified 1814.9455 0.94545182 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 6 0 1 77.454 77.454 2 0.0057402 24923 TMT1-5 65.295 33.656 15.936 14.647 14.255 22.793 21.437 15.378 15 15 15 22 22 15 1 1 1 1 1 1 3773.8 11002 1796 10895 17078 22269 22269 1 LAQDPFPLYPGEVLEKDITPLQVVLPNTALHLK Unmodified 3668.0229 0.022920864 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 1 8 0 1 87.255 87.255 5 0.00022562 28106 TMT1-7 43.728 37.782 23.258 36.272 27.763 29.665 20.058 46.332 22 36 29 29 22 44 1 1 1 1 1 1 5984.1 11003 1796 10896 17079 22270 22270 1 LAQFVEHWK Unmodified 1156.6029 0.60292873 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 9 0 1 61.363 61.363 3 0.0010609 16261 TMT1-8 84.615 50.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11004 1737 10897 17080 22271 22271 1 LAQGEYIAPEK Unmodified 1217.6292 0.62920306 2910;997 Q9ULC5-3;Q9ULC5;Q9ULC5-4;P33121-2;P33121-3;P33121 ACSL5;ACSL1 Long-chain-fatty-acid--CoA ligase 5;Long-chain-fatty-acid--CoA ligase 1 no no 0 0 0 0 0 5 0 1 50.305 50.305 2 0.0011189 14126 TMT1-4 69.261 24.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11005 2910;997 10898 17081 22272 22272 1 LAQGHTTVDELAR Unmodified 1409.7263 0.72629134 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 38.929 38.929 3 0.0002059 9926 TMT1-3 87.989 60.874 84.652 108.47 107.82 71.486 99.772 105.88 80 109 109 73 102 102 1 1 1 1 1 1 11038 11006 1833 10899 17082 22273 22273 1 LAQGLTHLGK Unmodified 1036.6029 0.60292873 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 8 0 1 47.648 47.648 3 0.026763 12734 TMT1-7 51.927 29.779 153.05 249.98 213.77 142.23 186.81 187.62 145 248 218 145 191 181 1 1 1 1 1 1 27182 11007 1683 10900 17083 22274 22274 1 LAQLEEAK Unmodified 900.49165 0.49164694 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 50.555 50.555 2 0.0011978 14194 TMT1-4 144.12 45.125 633.14 1052.9 719.46 552.18 905.19 925.04 599 1041 749 560 920 892 2 2 2 2 2 2 111000 11008 875 10901 17084;17085 22275;22276 22276 2 LAQLFIK Unmodified 831.52182 0.52182486 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 9 0 1 67.92 67.92 2 0.018768 18812 TMT1-8 95.62 25.353 138.98 166.21 125.89 116.34 156.6 157.56 131 167 131 116 160 152 1 1 1 1 1 1 18577 11009 214 10902 17086 22277 22277 1 LAQLQVAYHQLFQEYDNHIK Unmodified 2457.2441 0.24409346 3060 Q9Y6K9-2;Q9Y6K9;Q9Y6K9-3 IKBKG NF-kappa-B essential modulator yes no 0 0 0 0 0 8 0 1 71.279 71.279 4 7.1409E-10 21970 TMT1-7 92.31 71.871 61.09 110.2 98.816 103.9 90.455 90.161 58 109 102 102 94 87 1 1 1 1 1 1 9185.7 11010 3060 10903 17087 22278 22278 1 LAQLTLEQILEHLDNLR Unmodified 2018.116 0.1160394 2005 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 INTS3 Integrator complex subunit 3 yes no 0 0 0 0 0 8 0 1 89.75 89.75 3 0.00032233 29055 TMT1-7 70.802 63.356 15.901 22.105 13.814 22.672 29.293 0 15 22 15 22 29 0 1 1 1 1 1 0 3166.6 11011 2005 10904 17088 22279 22279 1 LAQLVEK Unmodified 799.48035 0.48035398 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 7 0 1 54.625 54.625 2 0.046598 15295 TMT1-6 83.265 22.466 123.11 105.34 139.68 60.568 114.42 120.39 116 109 138 65 116 116 1 1 1 1 1 1 16849 11012 48 10905 17089 22280 22280 1 LAQNIDVK Unmodified 899.50763 0.50763136 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 6 0 1 47.636 47.636 2 0.0042473 13169 TMT1-5 126.41 55.116 152.62 301.66 242.48 181.1 237.25 220.29 145 297 249 183 242 213 1 1 1 1 1 1 43012 11013 2263 10906 17090 22281 22281 1 LAQNILSYLDLK Unmodified 1389.7868 0.78676633 2902 Q9UL15;Q9UL15-2 BAG5 BAG family molecular chaperone regulator 5 yes no 0 0 0 0 0 9 0 1 85.347 85.347 3 7.454E-06 25664 TMT1-8 104.24 73.059 30.382 50.87 80.449 65.22 54.797 83.716 29 51 80 65 58 80 1 1 1 1 1 1 6763.9 11014 2902 10907 17091 22282 22282 1 LAQNPLFWK Unmodified 1115.6128 0.61276513 1947 Q53FT3 C11orf73 Protein Hikeshi yes yes 0 0 0 0 0 9 0 1 68.498 68.498 2 0.0011725 19084 TMT1-8 112.94 68.632 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11015 1947 10908 17092 22283 22283 1 LAQQISDEASR Unmodified 1216.6048 0.60477922 2338 Q93008-1;Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 0 4 0 1 43.24 43.24 2 0.00081787 11601 TMT1-3 101.5 66.721 84.907 92.987 78.014 57.002 92.611 90.099 80 94 80 58 94 87 1 1 1 1 1 1 9111.5 11016 2338 10909 17093 22284 22284 1 LAQQYYLVYQEPIPTAQLVQR Unmodified 2520.3377 0.33765949 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 0 7 0 1 73.325 73.325 3 1.0551E-05 22733 TMT1-6 72.086 56.996 46.952 27.346 20.586 30.088 20.332 37.796 44 29 22 29 22 36 1 1 1 1 1 1 11496 11017 891 10910 17094 22285 22285 1 LAQSEYQLLADIIPEHHQK Unmodified 2232.1539 0.15388147 2938 Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 EXOC7 Exocyst complex component 7 yes no 0 0 0 0 0 6 0 1 66.898 66.898 4 0.024722 20828 TMT1-5 37.112 13.55 22.99 44.162 66.048 34.043 72.742 59.752 22 44 65 36 73 58 1 1 1 1 1 1 5869.1 11018 2938 10911 17095 22286 22286 1 LAQYEPPQEEK Unmodified 1330.6405 0.64049603 2460 Q99417 MYCBP C-Myc-binding protein yes yes 0 0 0 0 0 4 0 1 47.112 47.112 3 0.00023028 13151 TMT1-3 99.522 77.476 122.68 209.91 123.33 116.81 139.52 197.49 116 207 131 116 145 189 1 1 1 1 1 1 14132 11019 2460 10912 17096 22287 22287 1 LAQYESK Unmodified 837.42323 0.42323303 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 5.5 0.5 1 1 41.962 41.962 2 0.010844 10821 TMT1-4 106.36 29.074 596.08 896.94 587.8 612.97 530.61 755.58 563 890 621 602 559 723 3 3 3 3 3 3 80363 11020 874 10913 17097;17098 22288;22289;22290 22288 3 LASCSADGTVR Unmodified 1135.5292 0.52917144 2729 Q9NRL3-3;Q9NRL3 STRN4 Striatin-4 yes no 0 0 0 0 0 4 0 1 34.255 34.255 2 0.00054925 8041 TMT1-3 76.228 40.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11021 2729 10914 17099 22291 22291 1 LASDLLEWIR Unmodified 1214.6659 0.66592292 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 8 0.816 1 1 1 84.534 84.534 2;3 5.0209E-14 27089 TMT1-7 182.29 114.07 4574.3 5771.9 5369.3 3795.1 4768.9 6432.6 4320 5799 5460 3847 4937 6162 7 7 7 7 7 7 1246800 11022 672;195 10915 17100;17101;17102 22292;22293;22294;22295;22296;22297;22298;22299 22297 8 LASDTEDNDEALAEILQANDNLTQVINLYK Unmodified 3332.626 0.62597476 2889 Q9UJY5-3;Q9UJY5-2;Q9UJY5;Q9UJY5-6 GGA1 ADP-ribosylation factor-binding protein GGA1 yes no 0 0 0 0 0 5 0 1 97.985 97.985 4 0.013003 32483 TMT1-4 33.289 26.131 4.229 3.8484 7.3218 0 4.0415 4.1487 4 4 7 0 4 4 1 1 1 0 1 1 914.66 11023 2889 10916 17103 22300 22300 1 LASEAKPAAVAAENEEIGSHIK Unmodified 2234.1543 0.1542754 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4.8 2.04 1 2 1 1 51.045 51.045 4;5 4.5206E-37 14409 TMT1-4 151.89 148.83 6925 9557.3 8512.7 6052.9 7549.7 9882.8 6546 9555 8679 6132 7808 9473 8 8 8 8 8 8 1501100 11024 3010 10917 17104;17105;17106;17107;17108 22301;22302;22303;22304;22305;22306;22307;22308 22303 8 LASGCDGSEIPDEVK Unmodified 1575.7087 0.70865195 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 2.5 0.5 1 1 53.029 53.029 3 6.9417E-06 16441 TMT1-2 97.273 76.61 77.673 64.052 55.93 58.172 100.38 105.87 73 66 58 58 102 102 2 2 2 2 2 2 16675 11025 2853 10918 17109;17110 22309;22310 22310 2 LASGETVAAFCLTEPSSGSDAASIR Unmodified 2496.1802 0.18023215 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 66.355 66.355 3 3.8277E-05 20437 TMT1-4 56.947 40.453 38.206 51.228 27.477 14.243 27.327 68.51 36 51 29 15 29 65 1 1 1 1 1 1 26574 11026 1194 10919 17111 22311 22311 1 LASIDEK Unmodified 774.41233 0.41233399 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 46.07 46.07 2 0.01083 12477 TMT1-4 106.42 10.622 1031 1371.2 1203.3 947.87 1055.5 1411.1 974 1373 1232 951 1097 1352 2 2 2 2 2 2 93979 11027 1616 10920 17112;17113 22312;22313 22313 2 LASILTSAAR Unmodified 1001.5869 0.58694431 1667 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 0 9 0 1 59.507 59.507 2 0.0010986 15537 TMT1-8 106.68 70.488 77.172 124.18 89.213 104.5 88.558 144.58 73 123 94 102 94 138 1 1 1 1 1 1 8652.8 11028 1667 10921 17114 22314 22314 1 LASLGLK Unmodified 700.44833 0.44832557 2415 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 0 9 0 2 56.583 56.583 2 0.0094506 14552 TMT1-8 124.37 0 397.74 640.98 596.57 443.06 470.95 587.79 377 637 607 446 489 564 2 2 2 2 2 2 48904 11029 2415 10922 17115;17116 22315;22316 22316 2 LASQADSTEQVDDTILT Unmodified 1805.8531 0.85306758 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 2 0 1 65.853 65.853 3 0.0050894 21017 TMT1-1 52.569 37.303 15.936 14.647 14.249 22.932 14.101 15.588 15 15 15 22 15 15 1 1 1 1 1 1 4758.4 11030 2308 10923 17117 22317 22317 1 LASQANIAQVLAELK Unmodified 1567.8934 0.89335667 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 8 0 1 81.098 81.098 3 1.7627E-15 25857 TMT1-7 139.58 109.38 216.52 252.58 184.04 191.64 210.94 241.29 204 254 193 189 218 232 2 2 2 2 2 2 30460 11031 1467;1637 10924 17118 22318;22319 22319 2 LASQLGVYK Unmodified 977.55458 0.55458155 1661 Q12979-4;Q12979-2;Q12979 ABR Active breakpoint cluster region-related protein yes no 0 0 0 0 0 8 0 1 54.683 54.683 2 0.0021416 15454 TMT1-7 105.4 83.89 69.019 79.552 54.674 66.461 70.445 83.27 65 80 58 65 73 80 1 1 1 1 1 1 5195.3 11032 1661 10925 17119 22320 22320 1 LASTLVHLGEYQAAVDGAR Unmodified 1970.0221 0.022139011 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7.5 1.12 1 1 1 1 64.093 64.093 3 1.2921E-35 19190 TMT1-6 160.55 135.61 246.71 341.76 264.72 273.1 273.12 301.35 233 341 276 269 283 290 4 4 4 4 4 4 86080 11033 1540 10926 17120;17121;17122;17123 22321;22322;22323;22324;22325;22326 22324 6 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK Unmodified 2773.4246 0.4246366 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 0 5.5 0.5 1 1 57.942 57.942 4 1.3396E-20 17251 TMT1-5 100.68 88.827 337.56 509.56 362.41 296.89 384.29 352.54 319 506 377 298 392 341 3 3 3 3 3 3 108080 11034 495 10927 17124;17125 22327;22328;22329 22329 3 LATALQK Unmodified 743.45414 0.45413923 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 0 7 3.03 1 2 2 48.415 48.415 2 7.7782E-08 10881 TMT1-8 178.84 89.168 35114 47394 35026 29082 36470 42491 33142 47319 36361 29145 37538 40836 10 10 10 10 10 10 3436200 + 11035 519;520;521;592;593;594;595;518;1486;1487;551;552 10928 17126;17127;17128;17129;17130 22330;22331;22332;22333;22334;22335;22336;22337;22338;22339 22337 10 LATATFAGIENK Unmodified 1234.6558 0.65575216 298 O75746-2;O75746 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 0 0 7 0 1 59.609 59.609 2 0.015464 17353 TMT1-6 69.554 51.823 38.023 82.018 32.201 36.787 34.133 53.392 36 80 36 36 36 51 1 1 1 1 1 1 8369.3 11036 298 10929 17131 22340 22340 1 LATATGAK Unmodified 731.41775 0.41775372 2585 Q9BZH6 WDR11 WD repeat-containing protein 11 yes yes 0 0 0 0 0 7 0 1 34.967 34.967 2 0.0050567 7581 TMT1-6 120.65 51.552 247.42 65.096 199.81 159.66 176.05 173 232 80 196 160 181 167 1 1 1 1 1 1 14721 11037 2585 10930 17132 22341 22341 1 LATELYHQK Unmodified 1101.5819 0.58185893 1602 Q06210-2;Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 0 6 0 1 43.497 43.497 3 0.00021771 11572 TMT1-5 84.213 46.737 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11038 1602 10931 17133 22342 22342 1 LATFVTQALIQLYAR Unmodified 1706.9719 0.97194134 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 9 0 1 97.949 97.949 3 2.6902E-16 30293 TMT1-8 126.09 101.39 23.319 21.333 30.089 21.848 21.517 14.31 22 22 30 22 22 14 2 2 2 2 2 2 2664.5 11039 2876 10932 17134 22343;22344 22344 2 LATFWYYAK Unmodified 1161.5859 0.58588168 319 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 0 9 0 1 73.048 73.048 2 0.017597 20976 TMT1-8 80.438 37.617 37.981 50.601 65.907 26.833 49.783 67.869 36 51 65 29 51 65 1 1 1 1 1 1 45366 11040 319 10933 17135 22345 22345 1 LATGLDVNVR Unmodified 1056.5928 0.59275797 2182 Q8N5J2-4;Q8N5J2-2;Q8N5J2;Q8N5J2-3 FAM63A Protein FAM63A yes no 0 0 0 0 0 6 0 1 51.937 51.937 2 0.012979 14876 TMT1-5 79.974 48.214 115.82 137.78 74.106 80.884 113.74 112.95 109 138 80 80 116 109 1 1 1 1 1 1 25306 11041 2182 10934 17136 22346 22346 1 LATGSDDNCAAFFEGPPFK Unmodified 2042.9044 0.90439164 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 6 0 2 72.444 72.444 3;4 1.2138E-23 22944 TMT1-5 137.73 121.11 1005.9 1116.6 1133.7 938.09 1156.8 1336.8 949 1131 1153 940 1191 1285 6 6 6 6 6 6 195970 11042 250 10935 17137;17138 22347;22348;22349;22350;22351;22352 22349 6 LATISVNK Unmodified 844.50182 0.5018177 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 0 8.5 0.5 1 1 50.373 50.373 2 1.4351E-06 11923 TMT1-8 139.88 75.074 153.37 171 227.2 117.04 204.98 179.63 145 174 225 123 207 174 1 1 1 1 1 1 19868 11043 2202 10936 17139;17140 22353;22354 22354 2 LATLLGLQAPPTR Unmodified 1349.8031 0.8030851 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 71.043 71.043 3 2.1094E-07 20022 TMT1-8 109.44 90.344 23.089 51.992 42.756 36.29 27.083 46.131 22 51 44 36 29 44 1 1 1 1 1 1 5695.9 11044 1754 10937 17141 22355 22355 1 LATLNEK Unmodified 787.44397 0.44396847 2268 Q8WUW1;Q8WUW1-2 BRK1 Protein BRICK1 yes no 0 0 0 0 0 6 0 1 45.162 45.162 2 0.009912 12202 TMT1-5 110.31 20.94 154.63 622.22 534.86 423.8 586.42 480.02 150 603 547 427 595 466 1 1 1 1 1 1 50513 11045 2268 10938 17142 22356 22356 1 LATNAAVTVLR Unmodified 1127.6663 0.66625727 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 8.5 0.5 1 1 52.38 52.38 2 1.6622E-09 14591 TMT1-7 166.69 102.48 277.01 216.3 328.17 204.49 291.17 263.52 261 226 325 210 296 255 2 2 2 2 2 2 41822 11046 1232 10939 17143;17144 22357;22358 22357 2 LATQSNEITIPVTFESR Unmodified 1904.9844 0.98435652 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 5.67 0.471 1 2 66.336 66.336 2;3 1.1566E-35 20528 TMT1-5 191.19 166.34 191.88 239.26 189.32 166.73 240.25 304.42 181 240 196 167 247 292 4 4 4 4 4 4 200940 11047 476 10940 17145;17146;17147 22359;22360;22361;22362 22361 4 LATQVIK Unmodified 771.48544 0.48543935 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 8 0 1 47.455 47.455 2 0.019759 12595 TMT1-7 97.798 30.766 84.224 153.69 141.39 131.43 177.09 180.43 80 152 145 131 181 174 1 1 1 1 1 1 9363.3 11048 2064 10941 17148 22363 22363 1 LATTILQHWK Unmodified 1209.687 0.68699271 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 61.561 61.561 3 7.8552E-05 16339 TMT1-8 106.2 74.136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11049 1507 10942 17149 22364 22364 1 LAVEAVLR Unmodified 869.53345 0.53345218 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 6 0 1 55.891 55.891 2 0.012741 16425 TMT1-5 96.19 27.404 115.06 205.83 143.6 178.09 188.01 256.87 109 203 152 174 196 246 1 1 1 1 1 1 79046 11050 1504 10943 17150 22365 22365 1 LAVNMVPFPR Unmodified 1142.627 0.62703499 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 0 0 0 6.33 3.77 1 2 65.897 65.897 2;3 3.7743E-12 18015 TMT1-8 175.38 121.62 638.78 885.84 633.78 586.57 452.12 944.37 603 883 662 579 489 898 4 4 4 4 4 4 718940 11051 537;1493;1932;2650;1713 10944 17151;17152;17153 22366;22367;22368;22369 22368 4 LAVNMVPFPR Oxidation (M) 1158.6219 0.62194961 2650;537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB1;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 1 0 0 9 0 1 57.802 57.802 2 0.0073443 14847 TMT1-8 84.368 55.267 115.35 182.87 115.92 125.91 86.181 185.16 109 181 123 123 94 176 1 1 1 1 1 1 29991 11052 537;1493;1932;2650;1713 10944 17154 22370 22370 92 1 LAVSSAA Unmodified 617.33844 0.33844077 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 5 0 1 44.708 44.708 2 0.031994 11919 TMT1-4 89.775 78.856 15.629 52.647 33.684 45.583 26.655 46.143 15 51 36 44 29 44 1 1 1 1 1 1 5054.1 11053 1857 10945 17155 22371 22371 1 LAVYIDK Unmodified 820.46945 0.46945494 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 7 0 1 57.328 57.328 2 0.010436 16458 TMT1-6 108.09 47.935 1052.7 1546.1 840.67 1102.7 1236.6 1501.9 993 1533 913 1076 1280 1442 2 2 2 2 2 2 157120 11054 816 10946 17156 22372;22373 22373 2 LAVYQAGAR Unmodified 947.51886 0.51886475 432 P02649 APOE Apolipoprotein E yes yes 0 0 0 0 0 7 0 1 41.737 41.737 2 0.036769 10263 TMT1-6 71.296 32.49 61.245 86.89 92.625 79.932 105.65 136.63 58 87 94 80 109 131 1 1 1 1 1 1 4872 11055 432 10947 17157 22374 22374 1 LAWGQPVGLR Unmodified 1095.6189 0.61891314 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 9 0 1 59.039 59.039 2 0.00027854 15338 TMT1-8 125.5 81.683 61.253 103.1 77.499 57.615 61.67 106.97 58 102 80 58 65 102 1 1 1 1 1 1 12297 11056 1146 10948 17158 22375 22375 1 LAYAENIALLAETALR Unmodified 1730.9567 0.95668521 2473 Q99570 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 yes yes 0 0 0 0 0 8 0 1 89.439 89.439 3 0.0019258 28925 TMT1-7 45.723 25.261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11057 2473 10949 17159 22376 22376 1 LAYELYTEALGIDPNNIK Unmodified 2036.0466 0.046622427 2478 Q99615-2;Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 0 7 0 1 86.139 86.139 4 0.00073691 27672 TMT1-6 60.209 30.881 15.731 29.185 36.506 13.813 21.593 22.836 15 29 36 15 22 22 1 1 1 1 1 1 1906.2 11058 2478 10950 17160 22377 22377 1 LAYINPDLALEEK Unmodified 1487.7872 0.78716026 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5 0 1 69.772 69.772 3 5.8424E-05 21778 TMT1-4 97.69 66.692 146.18 196.13 152.7 177.73 178.27 205.98 138 196 160 174 185 198 1 1 1 1 1 1 42464 11059 986 10951 17161 22378 22378 1 LAYLQILSEETSVK Unmodified 1592.8661 0.86613887 794 P19525-2;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 0 0 7 0 1 77.808 77.808 3 0.00033762 24444 TMT1-6 59.68 36.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11060 794 10952 17162 22379 22379 1 LAYRPPK Unmodified 843.49667 0.49667274 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 37.726 37.726 3 0.030304 7336 TMT1-8 57.102 29.578 122.35 180.94 203.23 110.92 199.86 214.96 116 181 203 116 203 207 1 1 1 1 1 1 3957.3 11061 569 10953 17163 22380 22380 1 LAYVAAGDLAPINAFIGGLAAQEVMK Unmodified 2602.3829 0.38289512 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 9 0 1 98.125 98.125 4 3.6524E-13 30374 TMT1-8 78.837 62.531 62.699 41.467 67.076 34.386 51.252 45.442 59 44 66 36 52 44 2 2 2 2 2 2 10442 11062 845 10954 17164 22381;22382 22382 2 LCAAAASILGK Unmodified 1073.5903 0.59031513 948 P30046;P30046-2;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 0 9 0 1 65.563 65.563 2 1.9601E-16 17942 TMT1-8 177.36 123.2 130.09 173.52 170.33 154.35 145.16 196.27 123 174 174 153 152 188 2 2 2 2 2 2 10008 11063 948 10955 17165 22383;22384 22384 2 LCAAAASILGKPADR Unmodified 1512.8082 0.80824683 948 P30046;P30046-2;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 1 9 0 1 58.188 58.188 3 2.1144E-19 14999 TMT1-8 141.85 106.33 200.12 291.69 202.05 173.86 227.8 352.74 189 290 211 174 237 337 1 1 1 1 1 1 26521 11064 948 10956 17166 22385 22385 1 LCCGLSMFEVILTR Unmodified 1697.8303 0.83030418 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 9 0 2 86.565 86.565 2;3 2.2212E-12 26108 TMT1-8 124.07 92.059 54.069 64.59 55.258 75.193 69.253 75.842 51 65 58 73 72 73 2 2 2 2 2 2 11671 11065 2079;2399 10957 17167;17168 22386;22387 22386 2 LCDFGVSGQLIDSMANSFVGTR Unmodified 2373.1093 0.10931581 1569;1037 Q02750;Q02750-2;P36507 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 0 0 0 0 0 8.5 0.5 1 1 88.645 88.645 3 2.0541E-14 26851 TMT1-8 91.729 77.419 39.351 36.245 28.061 45.485 49.694 45.486 37 37 30 44 51 44 2 2 2 2 2 2 12410 11066 1569;1037 10958 17169;17170 22388;22389 22389 2 LCDFNPK Unmodified 892.41129 0.41128813 596 P09496-2;P09496-4;P09496-3;P09496;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 0 6.5 0.5 1 1 50.431 50.431 2;3 0.011528 14259 TMT1-5 104.21 48.087 196.79 514.29 393.2 392.63 426.2 435.56 188 502 409 388 439 420 2 2 2 2 2 2 46580 11067 596 10959 17171;17172 22390;22391 22390 2 LCDSYEIRPGK Unmodified 1336.6445 0.64453555 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 1 6 0 1 44.67 44.67 3 0.00022603 12018 TMT1-5 102.4 79.021 232.67 424.5 209.31 289.83 198.8 402.61 220 417 230 280 216 383 1 1 1 1 1 1 26445 11068 170 10960 17173 22392 22392 1 LCELLSAQF Unmodified 1079.5321 0.53213155 335 O94973-2;O94973 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 0 7 0 1 84.728 84.728 2 0.0084632 27178 TMT1-6 91.041 69.887 62.89 41.999 34.483 36.64 34.689 37.386 59 44 36 36 36 36 1 1 1 1 1 1 6207.2 11069 335 10961 17174 22393 22393 1 LCELYAK Unmodified 895.44734 0.44733929 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 7 0 1 53.133 53.133 2 0.026016 14779 TMT1-6 92.925 0 191.77 175.26 262.84 132.7 131.46 197.72 181 181 259 138 138 189 1 1 1 1 1 1 14662 11070 908 10962 17175 22394 22394 1 LCENIAGHLK Unmodified 1153.5914 0.59137776 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6.5 0.5 1 1 46.069 46.069 3 0.0010796 12085 TMT1-6 90.685 61.386 928.68 1165.1 1087.4 803.08 753.09 1515.7 877 1171 1107 807 805 1442 3 3 3 3 3 3 140390 11071 457 10963 17176;17177 22395;22396;22397 22397 3 LCENYIK Unmodified 938.45315 0.45315295 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 6 0 1 47.993 47.993 2 0.038681 13347 TMT1-5 86.794 43.67 68.806 94.072 78.029 57.012 92.061 106.11 65 94 80 58 94 102 1 1 1 1 1 1 6361.2 11072 2642 10964 17178 22398 22398 1 LCFSTAQHAS Unmodified 1120.4971 0.49714303 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 8 1 1 1 43.804 43.804 2 0.0094446 9380 TMT1-8 81.784 64.017 61.474 79.973 59.902 46.542 66.917 90.833 58 80 62 47 69 87 2 2 2 2 2 2 9147.9 11073 713 10965 17179;17180 22399;22400 22400 2 LCLISTFLEDGIR Unmodified 1535.8018 0.80176447 138 O15260;O15260-2;O15260-3 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 8.33 0.471 2 1 87.411 87.411 2;3 0.00073715 28211 TMT1-7 90.306 50.684 87.971 139.82 64.392 105.04 138.92 109.03 83 138 72 102 141 106 4 4 4 4 4 4 39860 11074 138 10966 17181;17182;17183 22401;22402;22403;22404 22402 4 LCLPLPHIDK Unmodified 1204.6638 0.66381443 3088 yes no 0 0 0 0 0 6 0 1 50.105 50.105 3 0.0012113 14189 TMT1-5 61.398 3.0277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11075 3088 10967 17184 22405 22405 1 LCLQQGQLCEPLPSLAESR Unmodified 2198.0824 0.082372781 2053 Q6XQN6;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 6 0 1 66.903 66.903 3 0.035337 20863 TMT1-5 36.253 21.331 38.2 43.657 34.856 28.813 42.875 53.143 36 44 36 29 44 51 1 1 1 1 1 1 19767 11076 2053 10968 17185 22406 22406 1 LCNNPTPQFGGK Unmodified 1331.6292 0.62921983 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6 2.92 1 1 2 48.901 48.901 2;3 1.3015E-13 13066 TMT1-7 175.15 129.12 1760.1 2219 1842.8 1496 2082.8 1983 1661 2226 1896 1505 2122 1916 4 4 4 4 4 4 702600 + 11077 32;554 10969 17186;17187;17188;17189 22407;22408;22409;22410 22409 4 LCPDISFFQR Unmodified 1281.6176 0.61759251 2759 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 8 0 1 67.545 67.545 2 0.0018064 20517 TMT1-7 70.028 47.009 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11078 2759 10970 17190 22411 22411 1 LCPEASDIATSVR Unmodified 1417.6871 0.68712864 2456 Q96T51;Q96T51-2;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 4 0 2 51.487 51.487 2;3 3.7559E-06 14858 TMT1-3 111.31 83.3 108.06 161.35 95.879 95.606 133.68 182.74 102 160 102 95 138 175 2 2 2 2 2 2 14931 11079 2456 10971 17191;17192 22412;22413 22412 2 LCPGGQLPFLLYGTEVHTDTNK Unmodified 2459.2155 0.21549544 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 8 0 1 71.085 71.085 4 9.2326E-13 21924 TMT1-7 96.234 88.695 122.17 204.19 213.03 102.5 209.3 164.59 116 203 213 109 210 160 1 1 1 1 1 1 24124 11080 59 10972 17193 22414 22414 1 LCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPR Unmodified 4013.0067 0.0066952275 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 9 0 1 101.26 101.26 4 0.00074587 31536 TMT1-8 45.327 36.241 7.4331 22.907 0 7.382 14.303 53.958 7 22 0 7 15 51 1 2 0 1 1 2 4079.6 11081 59 10973 17194 22415;22416 22416 2 LCPHEEFLR Unmodified 1199.5757 0.5757277 1189 P49662-2;P49662;P49662-4;P49662-5 CASP4 Caspase-4;Caspase-4 subunit 1;Caspase-4 subunit 2 yes no 0 0 0 0 0 5 0 1 42.947 42.947 3 0.01408 11197 TMT1-4 62.558 42.037 139.01 150.11 134.11 123.36 163.87 149.89 131 152 138 123 167 145 1 1 1 1 1 1 13692 11082 1189 10974 17195 22417 22417 1 LCPLSFGEGVEFDPLPPK Unmodified 2000.9918 0.99175008 2185 Q8N5W9 FAM101B Filamin-interacting protein FAM101B yes yes 0 0 0 0 0 7 0 1 81.396 81.396 3 0.0013104 25823 TMT1-6 56.851 37.776 23.256 36.266 28.112 21.843 28.04 37.576 22 36 29 22 29 36 1 1 1 1 1 1 5183.2 11083 2185 10975 17196 22418 22418 1 LCQGLFFR Unmodified 1039.5273 0.52732094 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 9 0 1 62.047 62.047 2 0.032258 16503 TMT1-8 70.67 51.182 84.735 101.14 99.98 87.279 98.533 120.84 80 102 102 87 102 116 1 1 1 1 1 1 10526 11084 3017 10976 17197 22419 22419 1 LCQIPVHGASVPK Unmodified 1404.7548 0.7547547 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 8 0 1 46.41 46.41 4 0.0013972 12185 TMT1-7 71.241 43.62 269.38 456.46 504.6 341.79 393.79 533.49 256 454 507 347 409 511 1 1 1 1 1 1 26514 11085 1797 10977 17198 22420 22420 1 LCQPEGIHICDGTEAENTATLTLLEQQGLIR Unmodified 3479.7025 0.70246772 1908 Q16822;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 5 0 1 73.596 73.596 4 0.01744 23323 TMT1-4 29.64 17.787 23.279 21.221 36.953 13.653 28.673 30.096 22 22 36 15 29 29 1 1 1 1 1 1 5320.7 11086 1908 10978 17199 22421 22421 1 LCSGVLGTVVHGK Unmodified 1325.7126 0.71255553 3052 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 0 9 0 1 52.597 52.597 3 0.00037322 12852 TMT1-8 73.082 49.846 167.33 490.99 314.51 347.91 263.85 410.34 160 477 333 340 281 392 1 1 1 1 1 1 13855 11087 3052 10979 17200 22422 22422 1 LCSLEEAQR Unmodified 1104.5234 0.52335778 938 P29466-2;P29466;P29466-3;P29466-4 CASP1 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10 yes no 0 0 0 0 0 4 0 1 43.282 43.282 2 0.0076728 11621 TMT1-3 62.969 45.729 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11088 938 10980 17201 22423 22423 1 LCSLFYTNEEVAK Unmodified 1572.7494 0.74939455 1109 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 0 7 0 1 66.715 66.715 3 3.7E-08 20122 TMT1-6 100.19 80.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11089 1109 10981 17202 22424 22424 1 LCSVEQDLAMGSDAEGEK Unmodified 1937.8347 0.8346571 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 3 0.816 1 1 1 63.67 63.67 3 3.3047E-14 20658 TMT1-2 120.9 102.76 76.616 155.01 156.56 154.34 131.27 174.28 73 153 160 152 138 167 3 3 3 3 3 3 34066 11090 1878 10982 17203;17204;17205 22425;22426;22427 22426 3 LCTSATESEVAR Unmodified 1322.6136 0.61362935 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 3 0.816 1 1 1 38.992 38.992 2 4.7498E-65 9783 TMT1-3 211.84 163.06 130.51 150.93 119.23 117.28 127.77 112.55 123 152 124 116 131 109 2 2 2 2 2 2 27547 11091 979 10983 17206;17207;17208 22428;22429;22430 22430 3 LCTVATLR Unmodified 932.51134 0.51133653 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 8 0.816 1 1 1 46.919 46.919 2 1.2503E-18 12350 TMT1-7 198.07 128.69 1649.9 2593.1 2372.5 1524.8 2531.4 2892.3 1563 2579 2407 1568 2582 2781 4 4 4 4 4 4 477490 + 11092 28 10984 17209;17210;17211 22431;22432;22433;22434 22433 4 LCWFLDEAAAR Unmodified 1350.6391 0.63905624 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 7.5 0.5 1 1 74.709 74.709 2;3 0.0001691 23294 TMT1-7 109.88 68.884 91.949 146.21 111.75 125.93 156.38 151.17 87 145 117 124 160 146 3 3 3 3 3 3 38500 11093 349 10985 17212;17213 22435;22436;22437 22436 3 LCYVALDFEQEMAMVASSSSLEK Unmodified 2607.1907 0.19066218 615 P0CG39 POTEJ POTE ankyrin domain family member J yes yes 0 0 0 0 0 5.5 0.5 5 5 75.749 75.749 3;4 8.9491E-10 19865 TMT1-4 89.483 75.173 1406.2 1906.7 1901 1864.5 1596 2323.1 1330 1911 1946 1837 1684 2222 18 18 18 18 18 18 354070 11094 615 10986 17214;17215;17216;17217;17218;17219;17220;17221;17222;17223 22438;22439;22440;22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457 22438 20 LCYVALDFEQEMAMVASSSSLEK Oxidation (M) 2623.1856 0.1855768 615 P0CG39 POTEJ POTE ankyrin domain family member J yes yes 0 0 1 0 0 6.5 0.5 1 1 89.745 89.745 4 0.00014716 28418 TMT1-6 57.009 46.171 39.201 50.936 40.943 76.569 41.449 30.797 37 51 44 73 44 30 2 2 2 2 2 2 4322.4 11095 615 10986 17224;17225 22458;22459 22459 113;114 2 LCYVALDFEQEMATAASSSSLEK Unmodified 2549.1666 0.16655592 1357;1479;2044 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E no no 0 0 0 0 0 6 1.05 1 6 30 6 1 1 103.83 103.83 3;4 4.4631E-46 29309 TMT1-5 159.77 138.17 12641 18018 14871 11697 15277 18978 11948 17967 15280 11773 15739 18212 117 117 117 117 116 119 3107000 11096 1357;1479;2044 10987 17226;17227;17228;17229;17230;17231;17232;17233;17234;17235;17236;17237;17238;17239;17240;17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252;17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269;17270 22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472;22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483;22484;22485;22486;22487;22488;22489;22490;22491;22492;22493;22494;22495;22496;22497;22498;22499;22500;22501;22502;22503;22504;22505;22506;22507;22508;22509;22510;22511;22512;22513;22514;22515;22516;22517;22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530;22531;22532;22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555;22556;22557;22558;22559;22560;22561;22562;22563;22564;22565;22566;22567;22568;22569;22570;22571;22572;22573;22574;22575;22576;22577;22578;22579;22580 22485 121 LCYVALDFEQEMATAASSSSLEK Oxidation (M) 2565.1615 0.16147054 1357;1479;2044 P60709;P63261;Q6S8J3 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E no no 0 0 1 0 0 5.8 0.812 8 9 2 1 82.918 82.918 3;4;5 5.9649E-18 23974 TMT1-5 112.82 93.446 3201.6 4050.4 3647.6 3018.9 3782 4394.9 3023 4067 3735 3026 3891 4224 49 49 49 49 48 49 574720 11097 1357;1479;2044 10987 17271;17272;17273;17274;17275;17276;17277;17278;17279;17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290 22581;22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607;22608;22609;22610;22611;22612;22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629;22630 22602 221 50 LCYVALDFEQEMATVASSSSLEK Oxidation (M) 2593.1928 0.19277067 9 A5A3E0 POTEF POTE ankyrin domain family member F yes yes 0 0 1 0 0 5.5 0.5 2 2 80.412 80.412 3;4 1.6184E-06 25656 TMT1-4 74.047 51.612 77.095 108.85 115.12 77.994 137.42 97.349 73 109 116 80 138 95 2 2 2 2 2 2 21403 11098 9 10988 17291;17292;17293;17294 22631;22632;22633;22634 22631 0 4 LCYVALDFEQEMVR Oxidation (M) 1787.8222 0.82224192 1952 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 1 0 0 5.5 0.5 1 1 83.624 83.624 2 0.00040482 24362 TMT1-4 73.985 51.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11099 1952 10989 17295;17296 22635;22636 22635 273 2 LCYVGYNIEQEQK Unmodified 1642.7661 0.76610724 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 6 0 1 58.067 58.067 3 3.0206E-06 17372 TMT1-5 112.43 82.371 221.96 295.76 316.1 228.74 318.87 338.42 210 297 319 232 326 326 2 2 2 2 2 2 69738 11100 1380 10990 17297 22637;22638 22638 2 LCYYIGATDDAATK Unmodified 1560.713 0.71300904 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 0 6 0 1 60.419 60.419 3 1.9486E-10 18231 TMT1-5 122.66 109.89 276.09 345.43 372.5 249.96 290.13 324.31 261 348 375 254 299 312 2 2 2 2 2 2 53402 11101 1313 10991 17298 22639;22640 22639 2 LDADYPLR Unmodified 961.4869 0.48689592 181 O43583 DENR Density-regulated protein yes yes 0 0 0 0 0 4 0 1 51.227 51.227 2 0.0048418 14760 TMT1-3 122.18 69.493 122.48 223.41 143.96 194.19 202.6 298.03 116 220 154 189 212 285 1 1 1 1 1 1 20147 11102 181 10992 17299 22641 22641 1 LDAESLVK Unmodified 873.48075 0.48074791 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 5 0 1 55.692 55.692 2 0.0050521 16247 TMT1-4 75.043 24.077 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11103 1105 10993 17300 22642 22642 1 LDAFIEALHQEK Unmodified 1412.73 0.72997974 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 7 0 1 71.261 71.261 3 9.6823E-06 21887 TMT1-6 110.31 83.157 84.493 123.13 122.12 70.831 89.3 168.01 80 123 123 73 94 160 1 1 1 1 1 1 21685 11104 220 10994 17301 22643 22643 1 LDALEWESCFNK Unmodified 1510.6762 0.67622961 2297 Q92538-3;Q92538-2;Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 6 0 1 73.288 73.288 3 0.0004391 23341 TMT1-5 86.313 72.155 46.724 58.012 32.881 52.86 49.099 52.965 44 58 36 51 51 51 1 1 1 1 1 1 2870.1 11105 2297 10995 17302 22644 22644 1 LDAQASFLPK Unmodified 1088.5866 0.58660996 797 P19827-2;P19827 ITIH1 Inter-alpha-trypsin inhibitor heavy chain H1 yes no 0 0 0 0 0 7 0 1 60.663 60.663 2 0.0016606 17738 TMT1-6 71.524 32.974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11106 797 10996 17303 22645 22645 1 LDDCGLTEAR Unmodified 1148.5132 0.51318702 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 2.5 0.5 1 1 44.878 44.878 2 0.00027132 13012 TMT1-1 125.71 81.596 415.67 530.57 382.23 349.36 437.32 504.53 392 531 399 348 450 485 4 4 4 4 4 4 74280 11107 681 10997 17304;17305 22646;22647;22648;22649 22647 4 LDDFLDLNHK Unmodified 1228.6088 0.60880197 2274 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 65.038 65.038 3 0.00022055 19986 TMT1-5 77.744 44.687 46.616 81.456 31.142 60.345 63.413 52.556 44 80 36 58 65 51 1 1 1 1 1 1 8031.6 11108 2274 10998 17306;17307 22650;22651 22651 2 LDDGWNQIQFNLLDFTR Unmodified 2094.0171 0.017053633 3050 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 0 7 0 1 91.104 91.104 3 0.034811 29568 TMT1-6 38.453 23.299 0 23.317 5.4711 15.802 14.173 23.048 0 22 7 15 15 22 0 1 1 1 1 1 2606 11109 3050 10999 17308 22652 22652 1 LDDIFEPVLIPEPK Unmodified 1623.876 0.87597527 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 5 0 1 84.405 84.405 3 7.0947E-05 27515 TMT1-4 88.087 61.963 61.044 78.776 133.26 77.489 106.82 105.68 58 80 131 80 109 102 2 2 2 2 2 2 13086 11110 1744 11000 17309 22653;22654 22654 2 LDDLVNWAR Unmodified 1100.5615 0.56145784 259 O75251-2;O75251 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 70.687 70.687 2 0.007246 21656 TMT1-6 93.267 63.851 68.185 171.13 117.22 118.03 94.459 167.86 65 167 123 116 101 160 2 2 2 2 2 2 25729 11111 259 11001 17310;17311 22655;22656 22656 2 LDDNLLPSEEDPALQELESNFLIQQK Unmodified 2997.4819 0.4818767 2967 Q9Y2L6-2;Q9Y2L6 FRMD4B FERM domain-containing protein 4B yes no 0 0 0 0 0 4.5 0.5 1 1 91.06 91.06 4 7.8856E-09 30205 TMT1-3 78.202 59.483 43.647 31.645 31.347 50.282 16.699 53.889 41 33 33 48 18 51 2 2 2 2 1 2 5475.4 11112 2967 11002 17312;17313 22657;22658 22657 2 LDDPSCPRPECYR Unmodified 1663.7083 0.70827479 1077 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 0 1 3 0 1 37.943 37.943 3 0.00050358 10492 TMT1-2 69.602 66.108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11113 1077 11003 17314 22659 22659 1 LDEAEDDFKK Unmodified 1208.5561 0.55609769 1685 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 yes yes 0 0 0 0 1 4 0 1 49.944 49.944 3 0.017164 14271 TMT1-3 63.624 32.409 122.91 159.83 126.69 108.63 156.96 157.55 116 160 131 109 160 152 1 1 1 1 1 1 11333 11114 1685 11004 17315 22660 22660 1 LDEAQEAECQALR Unmodified 1531.6937 0.69367058 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 2 0 1 50.132 50.132 3 6.8737E-05 14948 TMT1-1 96.313 63.155 61.642 56.695 51.47 0 44.2 53.105 58 58 51 0 44 51 1 1 1 0 1 1 8830.5 11115 2630 11005 17316 22661 22661 1 LDEDLAAYCR Unmodified 1224.5445 0.54448715 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 0 3 0 1 54.42 54.42 2 0.00058756 17013 TMT1-2 112.8 89.226 61.639 49.133 58.288 27.144 57.354 60.191 58 51 58 29 58 58 1 1 1 1 1 1 11353 11116 599 11006 17317 22662 22662 1 LDEEAENLVATVVPTHLAAAVPEVAVYLK Unmodified 3060.6383 0.63831777 1838 Q15257-2;Q15257;Q15257-3 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 6.5 0.5 1 1 93.181 93.181 4 6.813E-09 30211 TMT1-6 73.676 67.027 62.318 86.818 92.593 80.623 69.025 105.7 59 87 94 80 73 101 3 3 3 3 3 3 13100 11117 1838 11007 17318;17319 22663;22664;22665 22665 3 LDEGWVPLEIMIK Unmodified 1541.8164 0.8163519 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 7 0 1 88.547 88.547 3 0.0079445 28514 TMT1-6 58.752 29.064 78.105 0 37.623 20.99 43.235 53.132 73 0 36 22 44 51 1 0 1 1 1 1 4411.7 11118 498 11008 17320 22666 22666 1 LDEIYVAGLVAHSDLDER Unmodified 2014.0007 0.0007348666 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 5 0 1 71.437 71.437 3 0.00063134 22425 TMT1-4 62.966 46.086 46.669 57.858 42.297 36.017 43.094 37.146 44 58 44 36 44 36 1 1 1 1 1 1 7469.5 11119 226;227 11009 17321 22667 22667 1 LDELEELLTNNR Unmodified 1457.7362 0.73618733 261 O75306-2;O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 82.289 82.289 3 1.6758E-05 26679 TMT1-4 105.36 65.934 47.64 58.582 58.731 30.352 72.859 91.729 45 59 59 30 74 88 3 3 3 2 3 3 13494 11120 261 11010 17322;17323 22668;22669;22670 22670 3 LDELRDEGK Unmodified 1073.5353 0.53530267 28 CON__P02768-1;P02768 ALB Serum albumin yes no 0 0 0 0 1 2.5 1.12 1 1 1 1 44.357 44.357 3 0.00062724 12970 TMT1-2 112.75 91.878 7139.8 9001.9 7513.5 5499.8 8396.8 10231 6738 9031 7703 5586 8605 9822 6 6 6 6 6 6 990000 + 11121 28 11011 17324;17325;17326;17327 22671;22672;22673;22674;22675;22676 22673 6 LDETVAYEQK Unmodified 1194.5768 0.57683314 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 4 0 1 50.183 50.183 3 0.00010667 14368 TMT1-3 113.93 66.324 122.91 191.14 99.525 141.98 155.13 166.13 116 189 109 138 160 160 1 1 1 1 1 1 15247 11122 1095 11012 17328 22677 22677 1 LDEYLNSPLPDEIDENSMEDIK Unmodified 2578.1632 0.16324468 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 0 3.67 0.471 1 2 79.119 79.119 3;4 2.4101E-19 25683 TMT1-3 95.622 75.183 39.476 27.959 14.075 6.2568 29.526 15.147 37 29 15 7 29 15 1 1 1 1 1 1 6491.6 11123 3048 11013 17329;17330;17331 22678;22679;22680 22680 3 LDFDGLPSGIGK Unmodified 1217.6292 0.62920306 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 7 0 1 69.203 69.203 3 0.00064551 21079 TMT1-6 81.625 51.851 69.047 63.442 63.565 58.604 53.232 138.13 65 65 65 58 58 131 1 1 1 1 1 1 8013.7 11124 1666 11014 17332 22681 22681 1 LDFEGPDAK Unmodified 990.46583 0.46582612 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 54.306 54.306 2 0.017745 15993 TMT1-3 78.934 69.72 176.72 277.68 179.46 168.07 199.93 227.75 167 275 189 167 206 219 1 1 1 1 1 1 27329 11125 1632 11015 17333 22682 22682 1 LDFEWTLK Unmodified 1050.5386 0.53859714 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 7 0 1 74.454 74.454 2 0.019479 23190 TMT1-6 89.355 28.918 46.649 42.694 58.397 35.071 42.331 60.62 44 44 58 36 44 58 1 1 1 1 1 1 5177.3 11126 772 11016 17334 22683 22683 1 LDFGDVLLATGGPLR Unmodified 1542.8406 0.84059282 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 7.67 0.471 1 2 83.496 83.496 2;3 5.2192E-34 26680 TMT1-7 193.49 155.81 146.16 218.76 136.18 178.08 212.04 227.4 138 217 146 174 218 219 4 4 4 4 4 4 61469 11127 699 11017 17335;17336;17337 22684;22685;22686;22687 22686 4 LDFMGWLGAIQK Unmodified 1377.7115 0.7114929 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 89.378 89.378 3 0.0016746 27159 TMT1-8 68.44 43.224 15.693 37.714 35.651 21.522 21.239 22.846 15 37 36 22 22 22 1 1 1 1 1 1 3056.3 11128 2440 11018 17338 22688 22688 1 LDFVCSFLQK Unmodified 1255.6271 0.62709457 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 9 0 1 81.083 81.083 2 8.5986E-06 23955 TMT1-8 142.43 98.078 38.119 50.985 42.362 44.77 42.398 45.694 36 51 44 44 44 44 1 1 1 1 1 1 5968.2 11129 1805 11019 17339 22689 22689 1 LDGEASINNR Unmodified 1087.5258 0.52580062 354 O95433-2;O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 0 2 0 1 38.134 38.134 2 0.0028483 10239 TMT1-1 98.044 50.962 15.604 36.388 51.662 28.239 20.124 46.33 15 36 51 29 22 44 1 1 1 1 1 1 4866.8 11130 354 11020 17340 22690 22690 1 LDGLVETPTGYIESLPR Unmodified 1858.9676 0.96764382 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 0 4.5 1.61 1 4 1 74.461 74.461 2;3 7.2276E-19 23696 TMT1-4 133.71 124.53 323.52 358.98 325.25 315.42 330.28 377.53 305 363 335 312 342 363 5 5 5 5 5 5 222860 11131 1315;1316 11021 17341;17342;17343;17344;17345;17346 22691;22692;22693;22694;22695;22696;22697 22694 7 LDGSVDFK Unmodified 879.4338 0.43379771 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 4 2.16 1 1 1 54.326 54.326 2 0.003606 13379 TMT 1-phospho 78.516 32.798 1277.6 1945.8 1287.9 1260.5 1543.3 2077.3 1207 1930 1356 1250 1599 1990 3 3 3 3 3 3 362110 11132 439 11022 17347;17348;17349 22698;22699;22700;22701 22698 4 LDGSVDFKK Unmodified 1007.5288 0.52876073 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 7 0 1 49.498 49.498 3 0.012215 13360 TMT1-6 70.412 37.888 2468.9 2893.7 2602.3 2062.5 2388.8 4041.3 2329 2917 2662 2070 2507 3855 1 1 1 1 1 1 461480 11133 439 11023 17350 22702 22702 1 LDHCLPLHGK Unmodified 1188.6074 0.60736218 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 7 0 1 41.176 41.176 4 0.0046771 10039 TMT1-6 70.399 46.017 231.19 289.41 213.04 266.63 258.27 285.78 218 290 225 260 268 275 1 1 1 1 1 1 12694 11134 2378 11024 17351 22703 22703 1 LDHKFDLMYAK Oxidation (M) 1395.6857 0.68567208 1491;2068;1492;2510;622;2783;14 P0DPH8;P0DPH7;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2;A6NHL2-2;A6NHL2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3 no no 0 0 1 0 1 7.5 0.5 1 1 51.407 51.407 4 0.0042249 14138 TMT1-7 76.655 52.464 541.21 614.79 311.06 410.56 372.85 563.93 509 617 341 399 393 539 2 2 2 2 2 2 75730 11135 622;1491;2068;2510;1492;2783;14 11025 17352;17353 22704;22705 22705 1 2 LDHKFDLMYAK Unmodified 1379.6908 0.69075746 1491;2068;1492;2510;622;2783;14 P0DPH8;P0DPH7;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2;A6NHL2-2;A6NHL2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3 no no 0 0 0 0 1 8.33 0.471 2 1 56.465 56.465 3;4 1.4896E-06 16128 TMT1-7 128.67 98.986 1389.8 2119.4 1399.2 1113.2 1293.6 2661.1 1313 2102 1463 1117 1373 2531 3 3 3 3 3 3 418290 11136 622;1491;2068;2510;1492;2783;14 11025 17354;17355;17356 22706;22707;22708 22706 3 LDHLAEK Unmodified 824.43922 0.43921744 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 4.75 2.28 1 1 1 1 41.07 41.07 3 0.0029527 10384 TMT1-4 101.33 42.723 13169 17002 16386 11600 14282 17971 12444 17071 16626 11752 14753 17241 6 6 6 6 6 6 862110 11137 672;195 11026 17357;17358;17359;17360 22709;22710;22711;22712;22713;22714 22711 6 LDHYAIIK Unmodified 971.54402 0.54401687 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 0 7 0 1 49.605 49.605 3 0.0068095 13352 TMT1-6 78.77 42.01 209.96 329.29 140.65 310.29 432.39 182.74 198 325 162 299 433 183 1 1 1 1 1 1 23327 11138 1441 11027 17361 22715 22715 1 LDIDPETITWQR Unmodified 1485.7464 0.74635808 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5 0 1 68.676 68.676 3 2.5274E-05 21327 TMT1-4 103.88 57.037 37.862 65.381 73.35 34.164 43.179 37.144 36 65 73 36 44 36 1 1 1 1 1 1 9411.8 11139 657 11028 17362 22716 22716 1 LDIDSPPITAR Unmodified 1196.6401 0.6401021 706;707 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 4.25 2.17 1 1 1 1 55.502 55.502 2 3.6943E-32 16040 TMT1-4 214.71 146.82 2638.8 3979.9 3070.1 2419.8 2827.5 3641.8 2495 3956 3170 2430 2929 3492 8 8 8 8 8 8 670830 11140 706;707 11029 17363;17364;17365;17366 22717;22718;22719;22720;22721;22722;22723;22724;22725 22722 9 LDIEASEAECR Unmodified 1291.5714 0.57143018 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 2 0 1 47.635 47.635 2 0.0067577 13973 TMT1-1 83.499 59.469 46.502 64.95 64.255 43.621 34.075 45.932 44 65 65 44 36 44 1 1 1 1 1 1 4726 11141 2935 11030 17367 22726 22726 1 LDIFAHNLAQAQR Unmodified 1495.7896 0.7895603 1333 P56202 CTSW Cathepsin W yes yes 0 0 0 0 0 8.5 0.5 1 1 58.864 58.864 3 2.3224E-09 15278 TMT1-8 111.26 58.467 108.11 153.93 93.845 151.26 86.906 160.62 102 153 102 145 95 153 2 2 2 2 2 2 18698 11142 1333 11031 17368;17369 22727;22728 22728 2 LDIISEDISELQK Unmodified 1501.7876 0.78755419 2088 Q7Z3B4;Q7Z3B4-3 NUP54 Nucleoporin p54 yes no 0 0 0 0 0 4 0 1 80.046 80.046 3 0.00055582 26055 TMT1-3 61.11 39.553 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11143 2088 11032 17370 22729 22729 1 LDILDMFTEIK Unmodified 1336.6948 0.69483978 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 7 0 1 95.253 95.253 3 0.011331 30969 TMT1-6 60.598 38.123 7.3208 22.702 12.73 22.884 21.469 14.311 7 22 14 22 22 14 1 1 1 1 1 1 1223.9 11144 962 11033 17371 22730 22730 1 LDILDTAGQEEFGAMR Unmodified 1764.8352 0.83524944 628 P10301;P62070;P62070-4;P62070-3 RRAS;RRAS2 Ras-related protein R-Ras;Ras-related protein R-Ras2 yes no 0 0 0 0 0 4 0 1 74.635 74.635 3 1.1327E-06 23966 TMT1-3 96.163 84.472 30.814 35.884 20.49 22.574 13.348 37.995 29 36 22 22 15 36 1 1 1 1 1 1 6801.3 11145 628 11034 17372 22731 22731 1 LDINLLDNVVNCLYHGEGAQQR Unmodified 2540.2442 0.24416981 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 2 84.632 84.632 3;4 5.1466E-09 27103 TMT1-6 82.99 74.6 68.861 79.113 81.566 22.058 89.255 51.819 65 80 81 22 88 51 2 2 2 1 2 2 25223 11146 121 11035 17373;17374 22732;22733 22733 2 LDISDEFSEVIK Unmodified 1393.6977 0.69767655 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 4.5 0.5 2 2 75.151 75.151 2;3 7.9483E-09 24196 TMT1-3 132.76 79.237 515.18 742.43 609.91 528.19 667.87 618.41 487 740 629 528 682 598 5 5 5 5 5 5 115770 11147 2654;2802 11036 17375;17376;17377;17378 22734;22735;22736;22737;22738;22739 22735 6 LDITTLTGVPEEHIK Unmodified 1664.8985 0.89850163 160 O43181 NDUFS4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial yes yes 0 0 0 0 0 6 0 1 63.937 63.937 3 1.0915E-07 19631 TMT1-5 107.61 84.806 146.88 143.04 80.146 104.74 104.51 136.66 138 145 87 102 109 131 1 1 1 1 1 1 11966 11148 160 11037 17379 22740 22740 1 LDIVFYLLR Unmodified 1150.675 0.67503104 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 9 0 1 96.723 96.723 2 0.017597 29839 TMT1-8 80.438 47.318 15.852 21.969 22.143 5.9135 22.213 15.356 15 22 22 7 22 15 1 1 1 1 1 1 3330.8 11149 1810 11038 17380 22741 22741 1 LDKAQIHDLVLVGGSTR Unmodified 1821.0108 0.010846043 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 8 0 1 55.979 55.979 4 0.00049759 15961 TMT1-7 68.129 47.392 191.36 276.67 244.81 182.34 164.39 330.03 181 276 250 183 176 314 1 1 1 1 1 1 33474 11150 618 11039 17381 22742 22742 1 LDKDNLSYIEHIFEISR Unmodified 2091.0637 0.063669474 1831 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 1 7 0 1 74.864 74.864 4 1.6294E-05 23392 TMT1-6 82.877 59.548 68.619 124.85 83.432 64.327 92.787 75.17 65 123 87 65 94 73 2 2 2 2 2 2 11501 11151 1831 11040 17382 22743;22744 22744 2 LDKENALDR Unmodified 1072.5513 0.55128709 595;593;518 P09493-3;P09493-10;P09493-8;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 4.5 0.5 2 2 38.715 38.715 3 0.00074181 10130 TMT1-3 105.52 0 4495.9 5128.5 6113.2 3710.2 5352.3 5394.7 4248 5201 6108 3820 5457 5204 4 4 4 4 4 4 399030 11152 593;595;518 11041 17383;17384;17385;17386 22745;22746;22747;22748 22746 4 LDKESYPVFYLFR Unmodified 1675.861 0.86099391 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 1 9 0 1 74.128 74.128 3 0.0010927 21295 TMT1-8 69.258 45.581 91.783 130.64 152.77 76.212 112.89 143.89 87 131 152 80 116 138 1 1 1 1 1 1 13289 11153 944 11042 17387 22749 22749 1 LDKSQIHDIVLVGGSTR Unmodified 1837.0058 0.005760665 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 1 8 0 2 54.144 54.144 3;4 1.6975E-18 15274 TMT1-7 131.09 104.06 954.59 1187.4 861.57 739.22 796.24 1440.9 900 1190 897 737 841 1373 4 4 4 4 4 4 140850 11154 641 11043 17388;17389 22750;22751;22752;22753 22752 4 LDLAGRDLTDYLMK Oxidation (M) 1638.8287 0.8287075 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 1 0 1 7 0 2 68.833 68.833 3;4 0.0012368 20903 TMT1-6 81.703 41.678 115.23 175 141.69 92.44 156.86 182.07 109 174 145 95 160 175 2 2 2 2 2 2 33091 11155 1357;1479;1488;1952 11044 17390;17391 22754;22755 22754 216 2 LDLAGRDLTDYLMK Unmodified 1622.8338 0.83379288 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 0 0 0 0 1 7.5 0.5 1 1 72.912 72.912 3 2.7002E-14 22618 TMT1-6 130.72 90.242 842.53 898.72 824.13 718.19 638.02 1325 794 911 845 713 685 1260 3 3 3 3 3 3 168710 11156 1357;1479;1488;1952 11044 17392;17393 22756;22757;22758 22757 3 LDLDFPNLPYLLDGK Unmodified 1731.9083 0.90833803 827 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 0 0 7 0 1 91.563 91.563 3 0.00097051 29699 TMT1-6 53.777 27.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11157 827 11045 17394 22759 22759 1 LDLDLTADSQPPVFK Unmodified 1657.8563 0.85630246 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 6 0 2 74.017 74.017 3;4 7.4445E-05 23585 TMT1-5 83.692 56.663 107.92 191.19 93.724 103.83 110.05 189.81 102 188 102 102 116 181 2 2 2 2 2 2 21018 11158 1688 11046 17395;17396 22760;22761 22760 2 LDLERETIELVHTEPTDVAQLPSR Unmodified 2760.4294 0.42938762 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 1 4 0 1 67.518 67.518 4 0.0017197 21194 TMT1-3 47.38 33.752 54.073 73.238 47.138 75.815 61.895 76.052 51 73 51 73 65 73 1 1 1 1 1 1 10393 11159 2013 11047 17397 22762 22762 1 LDLGSNEFTEVPEVLEQLSGLK Unmodified 2416.2373 0.23733632 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 6 0 1 98.501 98.501 3 6.4859E-13 32758 TMT1-5 99.881 80.846 7.4332 25.53 34.031 26.673 43.063 20.091 7 25 34 27 43 20 1 2 2 2 2 2 5659.9 11160 2448 11048 17398 22763;22764 22764 2 LDLITVEAFKPILSTR Unmodified 1815.0506 0.050585593 355 O95456-2;O95456 PSMG1 Proteasome assembly chaperone 1 yes no 0 0 0 0 1 9 0 1 81.175 81.175 3 0.020004 24030 TMT1-8 51.695 35.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11161 355 11049 17399 22765 22765 1 LDLLEDR Unmodified 872.46035 0.46034682 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 3 0.816 1 1 1 59.955 59.955 2 0.008358 18133 TMT1-3 116.9 32.66 568.49 786.37 630.05 520.86 761.67 851.32 537 785 650 524 779 819 3 3 3 3 3 3 139880 11162 1792 11050 17400;17401;17402 22766;22767;22768 22768 3 LDLLLEK Unmodified 842.51132 0.51131975 2425 Q96JB5-2;Q96JB5;Q96JB5-4;Q96JB5-3 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 0 0 0 0 0 7 0 1 72.78 72.78 2 0.0088226 22484 TMT1-6 114.93 14.783 146.73 144.78 103.94 102.65 140.17 197.47 138 147 109 102 145 189 1 1 1 1 1 1 15456 11163 2425 11051 17403 22769 22769 1 LDLMDEGTDAR Unmodified 1234.55 0.54996646 1226;1591;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM1;DNM3 Dynamin-2;Dynamin-1;Dynamin-3 no no 0 0 0 0 0 2 0 1 56.196 56.196 2 0.0015706 17347 TMT1-1 97.472 48.049 61.584 80.278 41.226 28.172 56.757 76.198 58 80 44 29 58 73 1 1 1 1 1 1 7033.1 11164 1226;1591;2942 11052 17404 22770 22770 1 LDLSSLAYSGK Unmodified 1152.6027 0.60265396 1894 Q16595 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes yes 0 0 0 0 0 8 0 1 66.319 66.319 2 0.0018437 20086 TMT1-7 96.009 52.824 61.733 49.393 42.35 44.519 55.749 83.689 58 51 44 44 58 80 1 1 1 1 1 1 4753.7 11165 1894 11053 17405 22771 22771 1 LDLTEKDYEILFK Unmodified 1625.8552 0.85523983 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 1 6.5 0.5 1 1 73.561 73.561 3 0.00061887 22805 TMT1-6 82.85 46.081 153.69 195.62 152.98 147.05 122.98 181.97 145 196 159 145 130 174 2 2 2 2 2 2 14036 11166 2319 11054 17406;17407 22772;22773 22773 2 LDNLFAYWNVK Unmodified 1381.703 0.7030367 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 9 0 1 83.753 83.753 3 0.0011295 24988 TMT1-8 75.78 38.224 61.815 42.066 34.833 28.804 43.425 37.137 58 44 36 29 44 36 1 1 1 1 1 1 7546.3 11167 2447 11055 17408 22774 22774 1 LDNLLLDTEGYVK Unmodified 1491.7821 0.78207489 1887 Q16512-2;Q16512 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 6 0 1 76.988 76.988 3 3.0251E-06 24751 TMT1-5 112.42 100.04 30.738 44.306 26.179 53.555 33.361 53.414 29 44 29 51 36 51 1 1 1 1 1 1 5031.4 11168 1887 11056 17409 22775 22775 1 LDNLMLELDGTENK Unmodified 1603.7763 0.77633758 581 P09104 ENO2 Gamma-enolase yes yes 0 0 0 0 0 5 0 1 75.737 75.737 3 0.0011379 24139 TMT1-4 70.47 46.99 53.985 80.549 55.704 43.718 56.042 76.219 51 80 58 44 58 73 1 1 1 1 1 1 7618.6 11169 581 11057 17410 22776 22776 1 LDNLVAILDINR Unmodified 1367.7773 0.77726428 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 8 0 1 85.056 85.056 3 5.8803E-05 27310 TMT1-7 101.53 74.434 84.689 131.23 82.291 79.524 160.13 104.16 80 130 87 80 160 102 2 2 2 2 2 2 68837 11170 937 11058 17411 22777;22778 22778 2 LDNVLLDR Unmodified 956.5291 0.52909508 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 5 0 1 57.82 57.82 2 0.0069365 17037 TMT1-4 103.8 58.315 153.48 187.5 194.38 127.16 235.94 147.84 145 189 196 131 236 145 1 1 1 1 1 1 24800 11171 1596 11059 17412 22779 22779 1 LDNVPHTPSSYIETLPK Unmodified 1909.9785 0.97854286 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 6 0 2 58.362 58.362 3;4 1.7746E-07 17446 TMT1-5 94.385 87.149 321.97 459.19 319.6 283.09 381.73 445.36 304 457 334 283 392 428 3 3 3 3 3 3 34270 11172 2488 11060 17413;17414 22780;22781;22782 22780 3 LDNWLNELETYCTR Unmodified 1825.8305 0.83049842 2700 Q9NP72;Q9NP72-2 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 6 0 1 81.43 81.43 3 0.0081796 26502 TMT1-5 54.234 30.403 37.877 74.058 63.427 50.92 55.454 83.698 36 73 65 51 58 80 1 1 1 1 1 1 10374 11173 2700 11061 17415 22783 22783 1 LDPAGAAETFHVGLPGALGGHDGLGLLR Unmodified 2710.4191 0.41909771 1265 P52333;P52333-2;P52333-4 JAK3 Tyrosine-protein kinase JAK3 yes no 0 0 0 0 0 7 0 1 73.181 73.181 4 2.5794E-08 22673 TMT1-6 71.528 56.914 30.517 58.803 50.935 12.686 35.79 37.355 29 58 51 15 36 36 1 1 1 1 1 1 7248.9 11174 1265 11062 17416 22784 22784 1 LDPFQEVVLESSSVDELR Unmodified 2061.0266 0.026615266 2430 Q96K76-4;Q96K76;Q96K76-2;Q96K76-3 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 4 0 1 81.872 81.872 3 0.00017181 26824 TMT1-3 69.763 50.931 12.785 6.4218 9.8174 12.411 6.3921 10.478 12 7 10 12 7 10 1 1 1 1 1 1 6953.2 11175 2430 11063 17417 22785 22785 1 LDPGDDISSLQQEITILR Unmodified 2012.0426 0.042599681 1650 Q12851-2;Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 yes no 0 0 0 0 0 4 0 1 81.577 81.577 3 6.6704E-09 26648 TMT1-3 81.723 62.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11176 1650 11064 17418 22786 22786 1 LDPGSEETQTLVR Unmodified 1443.7205 0.72053726 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 3 0 1 49.684 49.684 2 0.0011107 15146 TMT1-2 87.641 58.843 30.549 51.336 51.948 0 21.715 37.756 29 51 51 0 22 36 1 1 1 0 1 1 8129.8 11177 904 11065 17419 22787 22787 1 LDPGTEPLGTTK Unmodified 1227.6347 0.63468237 3059 Q9Y6I9 TEX264 Testis-expressed sequence 264 protein yes yes 0 0 0 0 0 5 0 1 51.451 51.451 3 0.0018631 14577 TMT1-4 55.314 27.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11178 3059 11066 17420 22788 22788 1 LDPHLVLDQLR Unmodified 1317.7405 0.74048484 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 5.6 2.42 1 2 1 1 64.517 64.517 2;3 3.2482E-07 19803 TMT1-5 137.55 99.827 3749 5420.9 4621.4 3759.7 4777.7 5005 3545 5405 4744 3774 4897 4823 7 7 7 7 7 7 1304000 11179 1019;1020 11067 17421;17422;17423;17424;17425 22789;22790;22791;22792;22793;22794;22795 22791 7 LDPHNHVLYSNR Unmodified 1463.727 0.72696004 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 34.132 34.132 4 0.0017888 7878 TMT1-5 72.659 67.58 199.86 283.39 253.97 233.97 237.74 287.43 189 283 261 232 247 276 2 2 2 2 2 2 19462 11180 986 11068 17426;17427 22796;22797 22797 2 LDPITGR Unmodified 770.42865 0.42865276 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 5 0 1 43.729 43.729 2 0.0095965 11479 TMT1-4 111.65 45.845 261.31 380.57 303 404.19 330.27 533.17 247 379 319 392 351 509 2 2 2 2 2 2 55596 11181 1748 11069 17428 22798;22799 22798 2 LDPQSGALYISK Unmodified 1290.682 0.68196691 584 P09326;P09326-2 CD48 CD48 antigen yes no 0 0 0 0 0 7 0 1 59.825 59.825 2 7.4408E-07 17405 TMT1-6 117.93 71.471 68.593 109.67 100.63 63.138 101.51 66.393 65 109 102 65 102 65 1 1 1 1 1 1 11959 11182 584 11070 17429 22800 22800 1 LDPSIFESLQK Unmodified 1275.6711 0.67106787 2955 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 0 7 0 1 74.145 74.145 2 0.00014961 23043 TMT1-6 110.84 59.645 92.104 122.9 105.49 103.52 89.41 121.1 87 123 109 102 94 116 1 1 1 1 1 1 15340 11183 2955 11071 17430 22801 22801 1 LDPTGTFEK Unmodified 1006.4971 0.49712625 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 54.881 54.881 2 0.017212 15997 TMT1-5 79.148 25.18 276.1 396.16 329.39 274.99 316.71 400.31 261 395 339 275 328 384 2 2 2 2 2 2 53059 11184 1900 11072 17431;17432 22802;22803 22803 2 LDQALVVEHIEK Unmodified 1392.7613 0.76127986 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 5 0 1 56.901 56.901 3 1.5015E-05 16646 TMT1-4 106.58 76.014 261.29 351.38 330.69 283.41 329.5 321.06 247 352 338 283 338 310 2 2 2 2 2 2 56803 11185 2085 11073 17433 22804;22805 22804 2 LDQAVLDLQR Unmodified 1169.6404 0.64043645 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 5 0 1 60.73 60.73 2 0.00025113 18194 TMT1-4 126.71 62.223 77.291 78.099 108.25 103.5 81.532 137.32 73 80 109 102 87 131 1 1 1 1 1 1 17312 11186 2642 11074 17434 22806 22806 1 LDQEDALLGSYPVDDGCR Unmodified 2021.9 0.90003454 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 2.5 0.5 1 1 65.553 65.553 3 2.4954E-08 20920 TMT1-1 101.64 100.1 45.519 89.616 56.632 35.902 55.889 91.147 43 88 59 36 58 87 2 3 3 2 3 3 35072 11187 2461 11075 17435;17436 22807;22808;22809 22807 3 LDQETAQWLR Unmodified 1258.6306 0.63060004 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 5.5 0.5 1 1 59.85 59.85 2;3 0.00076007 17839 TMT1-4 94.616 77.676 15.464 75.932 41.696 28.696 27.432 46.121 15 73 44 29 29 44 1 1 1 1 1 1 9751.3 11188 2407 11076 17437;17438 22810;22811 22810 2 LDQETLR Unmodified 873.4556 0.45559579 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 3 0 1 39.783 39.783 2 0.0067233 11212 TMT1-2 131.03 44.945 183.98 271.07 227.51 190.55 247.52 243.45 174 270 234 191 253 235 1 1 1 1 1 1 27922 11189 1734 11077 17439 22812 22812 1 LDQEVAEVDKNIELLK Unmodified 1854.9939 0.99385857 2494 Q99816;Q99816-2 TSG101 Tumor susceptibility gene 101 protein yes no 0 0 0 0 1 5 0 1 73.509 73.509 3 0.00037588 23217 TMT1-4 76.158 49.61 123.05 151.58 110.55 117.68 134.02 143.28 116 152 116 116 138 138 1 1 1 1 1 1 16156 11190 2494 11078 17440 22813 22813 1 LDQLIYIPLPDEK Unmodified 1555.8498 0.84976052 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 6.5 0.5 1 1 83.2 83.2 3 5.5559E-06 27179 TMT1-5 108.58 64.951 490.32 898.12 689.04 487.95 580.79 923.64 465 886 709 494 607 882 5 5 5 5 5 5 170210 11191 1311 11079 17441;17442 22814;22815;22816;22817;22818 22815 5 LDQWLTTMLLR Unmodified 1388.7486 0.74860669 1304 P54920;Q9H115-3;Q9H115-2;Q9H115 NAPA;NAPB Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein yes no 0 0 0 0 0 9 0 1 91.85 91.85 3 0.0011368 28049 TMT1-8 75.695 46.152 39.391 27.723 28.55 21.679 35.377 37.367 37 29 29 22 36 36 1 1 1 1 1 1 11923 11192 1304 11080 17443 22819 22819 1 LDRLEETVQAK Unmodified 1300.6987 0.69867961 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 5.5 0.5 1 1 52.55 52.55 3 0.00019519 15041 TMT1-4 102.87 79.268 407.8 745.24 620.1 526.33 560.31 798.44 387 736 638 525 585 764 3 3 3 3 3 3 75728 11193 971 11081 17444;17445 22820;22821;22822 22820 3 LDSGDLLQQAQEIR Unmodified 1584.8107 0.81074925 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 4 0 1 64.074 64.074 2 1.2857E-06 19792 TMT1-3 105.95 64.787 23.068 67.044 33.539 28.611 57.8 45.255 22 65 36 29 58 44 1 1 1 1 1 1 22078 11194 2053 11082 17446 22823 22823 1 LDSHPCLEVTAAALR Unmodified 1651.8352 0.83518986 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 5 0 1 52.948 52.948 3 0.00015094 15152 TMT1-4 78.69 51.978 53.929 72.836 71.763 57.932 63.011 67.492 51 73 73 58 65 65 1 1 1 1 1 1 14200 11195 2648 11083 17447 22824 22824 1 LDSQNAQGFEWLFLAWSPDNSPVR Unmodified 2776.3245 0.32452862 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 8 0 1 96.872 96.872 3 7.1806E-18 31563 TMT1-7 106.58 93.652 28.864 12.832 7.0604 1.5385 12.054 12.448 27 14 7 2 12 12 2 2 1 1 1 1 8018.6 11196 2013 11084 17448 22825;22826 22825 2 LDSSDIYNELK Unmodified 1295.6245 0.62451161 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 64.02 64.02 2;3 2.6415E-05 19770 TMT1-3 88.155 54.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11197 934 11085 17449;17450 22827;22828 22827 2 LDSSDIYNELKETYPNYLPLYVAR Unmodified 2875.428 0.42799064 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 7 0 2 83.141 83.141 3;4 7.7362E-07 26529 TMT1-6 75.061 63.537 100.94 76.602 102.39 64.439 84.903 91.385 95 80 102 66 87 88 2 2 2 2 2 2 14668 11198 934 11086 17451;17452 22829;22830 22829 2 LDSSEFLK Unmodified 937.47566 0.47566253 1648 Q12841;Q12841-2 FSTL1 Follistatin-related protein 1 yes no 0 0 0 0 0 5 0 1 58.491 58.491 2 0.029106 17332 TMT1-4 82.426 31.367 99.649 122.48 100.03 55.847 84.272 121.25 94 123 102 58 87 116 1 1 1 1 1 1 7748.7 11199 1648 11087 17453 22831 22831 1 LDSVESVLPYEYTAFDFCQASEGK Unmodified 2754.2371 0.23707833 2493 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 0 5.33 0.471 2 1 85.17 85.17 4;5 0.00078176 28039 TMT1-5 49.638 39.027 69.673 109.62 99.47 64.741 78.094 106.5 66 109 101 66 81 102 3 3 3 3 3 3 13768 11200 2493 11088 17454;17455;17456 22832;22833;22834 22834 3 LDSVIEFSIPDSLLIR Unmodified 1815.9982 0.99821567 1303 P54819-2;P54819;P54819-3;P54819-6;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 7 0 1 92.061 92.061 3 8.3916E-09 29855 TMT1-6 110.97 90.387 11.617 56.158 30.786 33.501 38.985 38.33 11 54 33 33 40 37 1 2 2 2 2 2 24964 11201 1303 11089 17457 22835;22836 22836 2 LDTDDLDEIEK Unmodified 1304.5984 0.59835644 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2;Q9UMR2-3;Q9NUU7-2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 2 0 1 61.749 61.749 3 9.198E-05 19519 TMT1-1 103.34 64.939 84.476 146.83 104.83 86.975 99.353 97.369 80 145 109 87 102 94 1 1 1 1 1 1 17221 11202 2752 11090 17458 22837 22837 1 LDTDHLR Unmodified 868.44028 0.44028008 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 33.745 33.745 3 0.0031709 8867 TMT1-2 100.45 41.764 46.485 88.648 46.99 59.242 71.84 52.316 44 87 51 58 73 51 1 1 1 1 1 1 6403.3 11203 2440 11091 17459 22838 22838 1 LDTIFFAK Unmodified 953.52222 0.52221879 3028 Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 0 0 0 9 0 1 73.559 73.559 2 0.0070334 21046 TMT1-8 119.29 67.295 84.81 85.162 100.94 87.212 99.049 105.91 80 87 102 87 102 102 1 1 1 1 1 1 9624.1 11204 3028 11092 17460 22839 22839 1 LDTLAQEVALLK Unmodified 1312.7602 0.76021723 497 P05452 CLEC3B Tetranectin yes yes 0 0 0 0 0 7 0 1 82.837 82.837 3 0.0028739 26409 TMT1-6 70.089 46.853 15.832 37.021 12.903 23.021 13.584 30.526 15 36 15 22 15 29 1 1 1 1 1 1 1749.8 11205 497 11093 17461 22840 22840 1 LDVATDNFFQNPELYIR Unmodified 2054.0109 0.010905622 2410 Q96GG9 DCUN1D1 DCN1-like protein 1 yes yes 0 0 0 0 0 6 0 1 80.955 80.955 2 0.00022456 26327 TMT1-5 78.529 54.853 15.86 29.546 14.377 0 22.778 6.812 15 29 15 0 22 7 1 1 1 0 1 1 3153.9 11206 2410 11094 17462 22841 22841 1 LDVGNAEVK Unmodified 943.49746 0.4974606 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 4.5 0.5 1 1 48.069 48.069 2;3 0.00051516 13236 TMT1-4 135.63 33.645 529.93 531.98 473.38 401.51 397.34 715.67 499 541 486 400 421 682 1 1 1 1 1 1 50151 11207 1244 11095 17463;17464 22842;22843 22843 2 LDVGNAEVKLEEENR Unmodified 1713.8533 0.85334235 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 1 3 0.816 1 1 1 53.488 53.488 3 2.2867E-15 16601 TMT1-2 140.3 109.34 756.08 1017.3 825.64 777.15 752.7 1135.1 714 1017 855 769 791 1085 4 4 4 4 4 4 113040 11208 1244 11096 17465;17466;17467 22844;22845;22846;22847 22845 4 LDVGNFSWGSECCTR Unmodified 1786.7403 0.7403032 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 6 0 1 64.4 64.4 3 0.014778 19840 TMT1-5 50.053 38.076 37.879 74.063 63.085 58.587 55.652 67.702 36 73 65 58 58 65 1 1 1 1 1 1 8253.5 11209 1417 11097 17468 22848 22848 1 LDVLVNNAYAGVQTILNTR Unmodified 2073.1219 0.12185306 2436 Q96LJ7 DHRS1 Dehydrogenase/reductase SDR family member 1 yes yes 0 0 0 0 0 9 0 1 94.726 94.726 3 9.2923E-08 29195 TMT1-8 75.912 53.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11210 2436 11098 17469 22849 22849 1 LDVPVWDVEATLNFLK Unmodified 1857.9877 0.98765098 63 O00391-2;O00391 QSOX1 Sulfhydryl oxidase 1 yes no 0 0 0 0 0 8 0 1 97.276 97.276 3 2.1844E-05 31703 TMT1-7 84.759 72.614 0 23.05 21.418 22.514 13.607 30.526 0 22 22 22 15 29 0 1 1 1 1 1 3159 11211 63 11099 17470 22850 22850 1 LDVQFSGLTK Unmodified 1106.5972 0.59717465 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7.5 0.5 1 1 64.023 64.023 2 1.9892E-06 19172 TMT1-7 160.36 86.425 1674.4 1918.2 1720.1 1411.2 1924 2091 1579 1936 1762 1418 1970 2013 5 5 5 5 5 5 520820 11212 831 11100 17471;17472 22851;22852;22853;22854;22855 22855 5 LDVTSVEDYK Unmodified 1167.5659 0.5659341 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 4.67 0.471 1 2 59.454 59.454 2;3 5.4465E-05 17687 TMT1-4 90.685 45.326 177.21 202.4 161.83 130.81 144.89 235.72 167 204 167 131 152 225 2 2 2 2 2 2 19915 11213 1161 11101 17473;17474;17475 22856;22857;22858 22858 3 LDYDEDASAMLK Unmodified 1369.6071 0.60714699 1224 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 0 0 0 4 0 1 62.638 62.638 3 1.5492E-08 19251 TMT1-3 109.24 85.249 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11214 1224 11102 17476 22859 22859 1 LDYFLLSHSLLPALCDSK Unmodified 2091.0711 0.071063038 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 9 0 2 84.35 84.35 3;4 1.1348E-11 25298 TMT1-8 108.63 78.868 106.93 146.16 118.18 125.55 156.4 151.17 101 146 123 124 160 146 3 3 3 3 3 3 30163 11215 914 11103 17477;17478 22860;22861;22862 22861 3 LDYILGLK Unmodified 933.55352 0.55351892 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 0 9 0 1 76.396 76.396 2 0.0063207 22159 TMT1-8 124.08 42.121 84.575 147.11 87.855 103.26 158.78 111.66 80 145 94 102 160 109 1 1 1 1 1 1 13115 11216 1135 11104 17479 22863 22863 1 LDYNNIPTVVFSHPPIGTVGLTEDEAIHK Unmodified 3175.619 0.61897931 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 6.33 0.471 2 1 72.017 72.017 4;5 1.309E-18 22816 TMT1-5 102.05 91.987 154.43 195.71 208.69 134.96 182.92 249.55 146 197 210 138 189 239 3 3 3 3 3 3 34907 11217 389 11105 17480;17481;17482 22864;22865;22866 22864 3 LDYQHEIENLQNQQDSER Unmodified 2258.02 0.019966759 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 3 0 1 53.461 53.461 3 9.0299E-05 16628 TMT1-2 56.553 55.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11218 965 11106 17483 22867 22867 1 LDYWEDDLR Unmodified 1223.5459 0.54586736 1229 P50851-2;P50851;Q8NFP9 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 0 3 0 1 65.014 65.014 2 0.0042713 21119 TMT1-2 99.802 51.519 93.11 146.38 96.858 95.498 136.36 104.84 88 145 102 95 138 102 2 2 2 2 2 2 16110 11219 1229 11107 17484 22868;22869 22868 2 LDYWEDDLRR Unmodified 1379.647 0.64697839 1229 P50851-2;P50851;Q8NFP9 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 0 0 0 0 1 4 0 1 55.954 55.954 3 0.00015307 16600 TMT1-3 115.78 93.248 99.55 145.95 96.886 94.718 119.63 136.23 94 145 102 94 123 131 1 1 1 1 1 1 15237 11220 1229 11108 17485 22870 22870 1 LEAALGEAK Unmodified 900.49165 0.49164694 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 5 0 1 52.35 52.35 2 0.00039528 14925 TMT1-4 138.98 75.41 153.39 257.38 151.47 122.09 176.55 239.08 145 254 160 123 182 229 1 1 1 1 1 1 27920 11221 429 11109 17486 22871 22871 1 LEAEDIALTATSQK Unmodified 1488.7672 0.7671531 2681 Q9HBI0;Q9HBI0-3;Q9HBI0-2 PARVG Gamma-parvin yes no 0 0 0 0 0 4 0 1 61.529 61.529 3 0.012751 18836 TMT1-3 52.201 44.831 46.661 50.282 49.962 44.183 49.498 52.954 44 51 51 44 51 51 1 1 1 1 1 1 8120.6 11222 2681 11110 17487 22872 22872 1 LEAEGVPEVSEK Unmodified 1285.6402 0.64016167 321 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 0 2.5 0.5 1 1 52.549 52.549 3 0.00012865 16171 TMT1-2 96.64 65.044 191.76 254.03 197.09 166.79 212.34 233.79 181 254 204 167 218 225 3 3 3 3 3 3 21959 11223 321 11111 17488;17489 22873;22874;22875 22875 3 LEAFLTQK Unmodified 948.52803 0.52803245 1569;1037 Q02750;Q02750-2;P36507 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 0 0 0 0 0 8 0 1 64.526 64.526 3 0.0027496 19282 TMT1-7 94.302 54.76 84.956 93.123 69.668 49.838 93.197 82.621 80 94 72 51 94 80 1 1 1 1 1 1 16266 11224 1569;1037 11112 17490 22876 22876 1 LEAGDHPVELLAR Unmodified 1418.7518 0.75177781 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 3.33 1.7 1 1 1 50.108 50.108 3 1.3995E-13 14262 TMT1-3 162.93 105.34 827.48 1223.8 914.18 883.67 1084.8 1281.3 782 1217 953 877 1118 1231 4 4 4 4 4 4 358870 11225 590 11113 17491;17492;17493 22877;22878;22879;22880 22879 4 LEAGDYADLVK Unmodified 1192.5976 0.59756858 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 4 0 1 62.299 62.299 3 0.0047611 19173 TMT1-3 69.01 44.219 46.862 27.097 35.815 28.623 49.957 60.402 44 29 36 29 51 58 1 1 1 1 1 1 8491.3 11226 1744 11114 17494 22881 22881 1 LEAGVER Unmodified 772.40792 0.40791731 1212 P50151 GNG10 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10 yes yes 0 0 0 0 0 2 0 1 34.806 34.806 2 0.0037083 8904 TMT1-1 85.813 41.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11227 1212 11115 17495 22882 22882 1 LEALDANSR Unmodified 987.49852 0.49852324 596 P09496-2;P09496-4;P09496-3;P09496 CLTA Clathrin light chain A yes no 0 0 0 0 0 4 0 1 44.316 44.316 2 5.2652E-06 12061 TMT1-3 162.49 99.948 506.99 566.94 511.13 408.17 504.71 687.03 478 573 523 410 523 658 1 1 1 1 1 1 85467 11228 596 11116 17496 22883 22883 1 LEALEEK Unmodified 830.43855 0.43854874 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 52.245 52.245 2 0.022671 15203 TMT1-3 95.531 18.473 107.72 167.95 147.96 132 125.52 158.45 102 167 152 131 131 152 1 1 1 1 1 1 21215 11229 664 11117 17497 22884 22884 1 LEALFPDLPK Unmodified 1141.6383 0.63831118 2103 Q86TP1;Q86TP1-2;Q86TP1-5;Q86TP1-4;Q86TP1-3 PRUNE Protein prune homolog yes no 0 0 0 0 0 7 0 1 76.922 76.922 2 0.0015924 24099 TMT1-6 102.06 79.914 34.955 43.804 39.201 28.618 39.502 29.787 33 44 40 29 40 29 1 1 1 1 1 1 6499 11230 2103 11118 17498 22885 22885 1 LEALLEAAGIGK Unmodified 1183.6812 0.68123863 256 Q8IWZ3-5;Q8IWZ3-2;O75179-5;O75179-3;O75179-4;O75179-6;O75179-7;Q8IWZ3;Q8IWZ3-4;O75179-2;O75179;Q8IWZ3-6 ANKHD1;ANKRD17 Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17 yes no 0 0 0 0 0 8 0 1 84.573 84.573 2 5.2188E-09 27097 TMT1-7 121.73 87.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11231 256 11119 17499 22886 22886 1 LEAPELPVK Unmodified 994.5699 0.56989727 2159 Q8IZQ5 SELH Selenoprotein H yes yes 0 0 0 0 0 5.5 0.5 1 1 58.447 58.447 3 0.00090419 17515 TMT1-5 68.735 50.871 75.749 139.47 135.02 124.44 103.9 128.15 72 138 138 123 109 123 1 1 1 1 1 1 10698 11232 2159 11120 17500;17501 22887;22888 22888 2 LEAPLEELR Unmodified 1068.5815 0.58152458 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 2.5 0.5 1 1 59.055 59.055 2 0.0049855 18719 TMT1-2 98.233 55.837 154.02 173.88 115.94 133.34 155.79 158.65 145 175 123 131 160 153 3 3 3 3 3 3 26952 11233 1886 11121 17502;17503 22889;22890;22891 22890 3 LEATINELV Unmodified 1000.5441 0.54407645 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 0 3.5 0.5 1 1 79.332 79.332 2 0.0002633 25743 TMT1-3 143 74.583 260.58 420.43 276.48 265.9 328 296.99 246 416 291 264 335 287 3 5 5 5 5 4 166710 11234 632 11122 17504;17505 22892;22893;22894;22895;22896 22895 5 LEAVSHTSDMHR Oxidation (M) 1397.6358 0.63576177 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 1 0 0 4 0 1 26.717 26.717 4 0.00015809 5072 TMT1-3 95.138 79.248 38.114 50.973 43.108 28.045 57.569 52.723 36 51 44 29 58 51 1 1 1 1 1 1 6629.9 11235 1555;1556 11123 17506 22897 22897 250 1 LEAVSHTSDMHR Unmodified 1381.6408 0.64084715 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 5.57 1.4 2 2 1 1 1 31.201 31.201 3;4 7.9629E-11 6541 TMT1-4 156.01 141.14 600.06 949.76 594.68 629.63 669.23 839.03 567 940 631 620 695 805 7 7 7 7 7 7 118420 11236 1555;1556 11123 17507;17508;17509;17510;17511;17512;17513 22898;22899;22900;22901;22902;22903;22904;22905 22901 8 LECLASGIWTNKPPQCLAAQCPPLK Unmodified 2851.4183 0.41831113 733 P16109 SELP P-selectin yes yes 0 0 0 0 1 9 0 1 70.608 70.608 4 8.5619E-16 19940 TMT1-8 85.932 72.994 30.808 28.313 27.875 37.025 35.184 22.448 29 29 29 36 36 22 1 1 1 1 1 1 7929.9 11237 733 11124 17514 22906 22906 1 LEDAGVR Unmodified 758.39227 0.39226725 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 2.5 0.5 1 1 35.795 35.795 2 0.0080481 9594 TMT1-2 120.52 71.163 254.34 341.59 244.43 266.37 288.59 316.9 240 341 257 262 298 305 2 2 2 2 2 2 44513 11238 681 11125 17515;17516 22907;22908 22908 2 LEDASILCLDK Unmodified 1275.6381 0.63805318 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 3 0 1 60.312 60.312 3 0.0349 19290 TMT1-2 47.844 6.6802 77.563 78.856 61.864 75.069 54.894 67.724 73 80 65 73 58 65 1 1 1 1 1 1 10496 11239 1564 11126 17517 22909 22909 1 LEDFRDYR Unmodified 1112.5251 0.52507234 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-2;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 1 4 0 1 45.048 45.048 3 0.025009 12359 TMT1-3 68.383 30.222 185.47 273.24 155.39 178.97 161.79 349.3 175 271 167 175 174 332 2 2 2 2 2 2 56698 11240 672;195;1022 11127 17518 22910;22911 22911 2 LEDGDIEEAPGAGGR Unmodified 1484.6743 0.67431535 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 2 0 1 46.191 46.191 2 6.7107E-10 13380 TMT1-1 120.57 112.47 30.773 35.771 27.419 37.205 27.041 46.132 29 36 29 36 29 44 1 1 1 1 1 1 10280 11241 3042 11128 17519 22912 22912 1 LEDGTEFDSSLPQNQPFVFSLGTGQVIK Unmodified 3052.5029 0.5029465 905 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 0 6 0 2 84.169 84.169 4;5 1.2633E-06 27567 TMT1-5 65.428 46.868 68.802 95.138 77.94 57.574 62.478 83.497 65 95 80 58 65 80 2 2 2 2 2 2 24715 11242 905 11129 17520;17521 22913;22914 22913 2 LEDILESINSIK Unmodified 1372.745 0.7449611 2990 Q9Y3A6 TMED5 Transmembrane emp24 domain-containing protein 5 yes yes 0 0 0 0 0 7.33 0.471 2 1 85.879 85.879 2;3 8.4563E-09 27585 TMT1-6 149.38 104.05 132.18 92.088 68.396 98.728 112.91 143.89 124 96 73 96 117 138 4 4 4 4 4 4 25131 11243 2990 11130 17522;17523;17524 22915;22916;22917;22918 22915 4 LEDLEVIQHR Unmodified 1250.6619 0.66190017 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 51.663 51.663 3 0.00013114 14937 TMT1-3 110.14 76.269 38.045 58.336 48.514 66.814 71.235 59.795 36 58 51 65 73 58 1 1 1 1 1 1 7528.7 11244 1546 11131 17525 22919 22919 1 LEDLKEQLAPLEK Unmodified 1524.8399 0.83992412 2220 Q8NE86-3;Q8NE86 MCU Calcium uniporter protein, mitochondrial yes no 0 0 0 0 1 6.33 0.471 2 1 67.582 67.582 3;4 0.00016838 20467 TMT1-6 92.939 65.291 430 595.62 442.63 361.58 468.03 507.92 406 594 459 363 480 489 3 3 3 3 3 3 38316 11245 2220 11132 17526;17527;17528 22920;22921;22922 22922 3 LEDLVCDVVDR Unmodified 1331.6391 0.63911582 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 3 0 1 73.274 73.274 2 0.0014046 24380 TMT1-2 68.551 31.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11246 203 11133 17529 22923 22923 1 LEDPDGK Unmodified 772.3603 0.36029842 2126 Q86XR7-2;Q9Y3B3-2;Q9Y3B3 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 0 2 0 1 40.821 40.821 2 0.0022225 11287 TMT1-1 91.041 61.468 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11247 2126 11134 17530 22924 22924 1 LEDPDPGVQSAAVNVICELAR Unmodified 2252.1107 0.11069602 97 O14617-4;O14617;O14617-5 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 5 0 1 80.679 80.679 3 0.00022975 26071 TMT1-4 59.469 41.963 23.382 29.062 13.015 30.377 28.939 0 22 29 15 29 29 0 1 1 1 1 1 0 4873.8 11248 97 11135 17531 22925 22925 1 LEDPHVDIIR Unmodified 1205.6404 0.64043645 2535 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 0 3 0 1 48.731 48.731 3 1.2428E-05 14790 TMT1-2 143.96 93.354 231.06 319.28 208.75 201.28 143.33 339.16 218 318 220 198 157 322 1 1 1 1 1 1 55421 11249 2535 11136 17532 22926 22926 1 LEDQLAGLQQELAALALK Unmodified 1923.0677 0.06769222 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 7 0 2 95.344 95.344 3;4 8.6049E-06 31039 TMT1-6 79.311 49.983 62.816 56.903 34.27 45.645 21.531 38.828 59 58 37 44 22 37 2 2 2 2 1 2 6039.1 11250 2859 11137 17533;17534 22927;22928 22928 2 LEDRETVIK Unmodified 1101.603 0.60298831 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 1 4 0 1 40.77 40.77 3 0.013077 10623 TMT1-3 70.942 26.517 145.64 279.92 171.08 162.45 119.03 306.81 138 275 181 160 131 291 1 1 1 1 1 1 12788 11251 1762 11138 17535 22929 22929 1 LEDSEVR Unmodified 846.40831 0.40831125 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 2 0 1 34.695 34.695 2 0.0064237 8861 TMT1-1 79.451 8.0731 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11252 2162 11139 17536 22930 22930 1 LEDTENWLYEDGEDQPK Unmodified 2079.8909 0.89090965 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 2.33 0.471 2 1 66.945 66.945 3 3.9268E-14 21465 TMT1-1 95.767 78.887 46.663 50.288 49.619 51.871 48.631 67.902 44 51 51 51 51 65 1 1 1 1 1 1 18915 11253 1009 11140 17537;17538;17539 22931;22932;22933 22931 3 LEDVLPLAFTR Unmodified 1272.7078 0.70778773 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 0 7 0 1 78.438 78.438 2 8.6036E-07 24625 TMT1-6 144.77 81.203 107.85 160.76 132.18 155.88 184.34 180.22 102 160 138 153 189 174 2 2 2 2 2 2 40804 11254 1970 11141 17540 22934;22935 22934 2 LEEEDEDEEDGESGCTFLVGLIQK Unmodified 2740.1909 0.190916 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 4 0 1 81.218 81.218 3 1.2122E-10 26515 TMT1-3 79.347 66.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11255 761 11142 17541 22936 22936 1 LEEEMRK Unmodified 933.45897 0.45896661 971;2072 P31146;Q7L014 CORO1A;DDX46 Coronin-1A;Probable ATP-dependent RNA helicase DDX46 no no 0 0 0 0 1 4 0 1 38.041 38.041 3 0.041286 9506 TMT1-3 63.21 5.0164 192.34 200.61 144.21 162.75 187.97 309.11 181 203 152 160 197 295 1 1 1 1 1 1 25948 11256 971;2072 11143 17542 22937 22937 1 LEEEQIILEDQNCK Unmodified 1759.8298 0.82982971 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.6 0.49 2 3 60.32 60.32 2;3;4 1.3288E-21 19282 TMT1-2 171.05 149.5 523.02 533.28 550.87 507.01 470.09 618.72 493 543 562 502 492 593 6 6 6 6 6 6 303900 11257 1019 11144 17543;17544;17545;17546;17547 22938;22939;22940;22941;22942;22943 22941 6 LEEEVEACK Acetyl (N-term) 1147.5067 0.50670466 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 1 0 0 0 0 2 0 1 65.701 65.701 2 0.0055547 20966 TMT1-1 53.166 12.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11258 2935 11145 17548 22944 22944 1 LEEHLEGIVNIFHQYSVR Unmodified 2182.1171 0.11710203 1512 P80511 S100A12 Protein S100-A12;Calcitermin yes yes 0 0 0 0 0 8 0 1 71.135 71.135 4 0.00054236 21912 TMT1-7 62.438 57.228 46.62 57.723 50.596 19.936 58.198 45.243 44 58 51 22 58 44 1 1 1 1 1 1 12081 11259 1512 11146 17549 22945 22945 1 LEEIAELVASSLPSPLR Unmodified 1823.004 0.0040293305 2015 Q6IN85-5;Q6IN85-2;Q6IN85 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A yes no 0 0 0 0 0 8 0 1 101.59 101.59 3 1.6936E-05 33003 TMT1-7 80.738 59.062 11.682 10.729 18.773 0 7.322 7.462 11 11 18 0 7 7 1 1 2 0 1 1 1394.7 11260 2015 11147 17550 22946;22947 22946 2 LEELYTK Unmodified 894.46985 0.46984887 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 5 0 1 55.492 55.492 2 0.0012209 16168 TMT1-4 100.15 46.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11261 2930 11148 17551 22948 22948 1 LEEPSLR Unmodified 842.44978 0.44978213 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 3 0 1 43.191 43.191 2 0.033457 12636 TMT1-2 89.123 12.29 30.596 43.91 50.427 44.145 50.049 36.948 29 44 51 44 51 36 1 1 1 1 1 1 21749 11262 68 11149 17552 22949 22949 1 LEEQAAQHK Unmodified 1052.5251 0.52507234 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 31.486 31.486 3 0.0047479 6937 TMT1-3 76.228 34.688 107.5 213.74 146.68 99.198 188.53 134.27 102 210 152 102 189 131 1 1 1 1 1 1 10738 11263 1833 11150 17553 22950 22950 1 LEEQDEFEK Unmodified 1165.5139 0.51389853 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 2.5 0.5 1 1 49.816 49.816 3 0.00039891 14974 TMT1-1 107.24 76.372 231.8 327.99 257.68 257.02 220.72 295.38 219 327 268 253 232 283 3 3 3 3 3 3 43471 11264 2744 11151 17554;17555 22951;22952;22953 22952 3 LEEQLENLIEFIR Unmodified 1644.8723 0.87228688 1832 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 0 5 0 1 94.238 94.238 3 0.0089219 31203 TMT1-4 57.328 22.321 16.052 0 7.1713 7.2236 0 23.452 15 0 7 7 0 22 1 0 1 1 0 1 1738.4 11265 1832 11152 17556 22954 22954 1 LEEQRPER Unmodified 1055.536 0.53597137 687 P13693;P13693-2;Q9HAU6 TPT1;TPT1P8 Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8 yes no 0 0 0 0 1 2 0 1 25.388 25.388 3 0.0039436 5240 TMT1-1 98.009 58.999 53.539 79.306 131.83 109.58 90.45 82.699 51 80 131 109 94 80 1 1 1 1 1 1 14568 11266 687 11153 17557 22955 22955 1 LEESHNR Unmodified 883.41479 0.41479361 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 2 0 1 19.529 19.529 3 0.01392 3389 TMT1-1 75.243 35.041 6.3546 5.8035 9.093 5.9445 3.8048 3.0894 6 6 9 6 4 3 1 1 1 1 1 1 507.38 11267 2162 11154 17558 22956 22956 1 LEESYELIEK Unmodified 1251.6234 0.62344898 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 4 0 1 62.313 62.313 3 3.8669E-05 19123 TMT1-3 92.538 58.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11268 2968 11155 17559 22957 22957 1 LEESYTLNSDLAR Unmodified 1509.7311 0.73110195 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 3.33 0.471 2 1 55.51 55.51 2;3 9.0342E-11 17436 TMT1-2 142.83 69.763 153.65 210.63 146.33 130.18 169.53 189.17 145 210 153 130 174 182 3 3 3 3 3 3 37485 11269 967 11156 17560;17561;17562 22958;22959;22960 22958 3 LEETLEQLAK Unmodified 1172.6289 0.62886871 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 5 0 1 70.141 70.141 3 0.0083861 21897 TMT1-4 44.57 13.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11270 839 11157 17563 22961 22961 1 LEETLPVIR Unmodified 1068.6179 0.61791009 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 5 0 1 58.448 58.448 2 6.1947E-05 17255 TMT1-4 152.47 101.12 92.132 115.42 107.01 79.339 91.584 90.129 87 116 109 80 94 87 1 1 1 1 1 1 22027 11271 193 11158 17564 22962 22962 1 LEETQALLR Unmodified 1071.5924 0.59242362 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 5 0 1 53.454 53.454 2 0.0015543 15336 TMT1-4 117.81 32.546 123.11 129.09 119.17 124.67 141.84 119.61 116 131 123 123 145 116 1 1 1 1 1 1 24445 11272 1762 11159 17565 22963 22963 1 LEETVQAK Unmodified 916.48656 0.48656157 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 3.25 1.48 1 1 1 1 43.628 43.628 2;3 3.2217E-12 11751 TMT1-3 182.39 57.552 1550.8 2176.7 1715.7 1564.5 1284 2428 1465 2171 1778 1547 1376 2312 5 5 5 5 5 5 356100 11273 971 11160 17566;17567;17568;17569 22964;22965;22966;22967;22968 22967 5 LEEVLTNK Unmodified 944.51786 0.51786169 1506 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 6 0 1 56.681 56.681 2 0.0048402 16777 TMT1-5 122.19 42.59 251.69 280.96 381.08 195.55 424.99 338.59 238 286 377 207 426 329 1 1 1 1 1 1 31805 11274 1506 11161 17570 22969 22969 1 LEEVLTNKK Unmodified 1072.6128 0.61282471 1506 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 1 7 0 2 51.291 51.291 2;4 0.0036241 14026 TMT1-6 103.7 44.35 191.68 340.33 317.55 261.05 339.48 334.63 182 337 324 262 347 323 2 2 2 2 2 2 24001 11275 1506 11162 17571;17572 22970;22971 22970 2 LEEVTGK Unmodified 774.41233 0.41233399 331 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 0 5 0 1 46.1 46.1 2 0.01822 12375 TMT1-4 98.997 24.581 84.447 154.31 103.33 110.45 134.35 143.27 80 152 109 109 138 138 1 1 1 1 1 1 82634 11276 331 11163 17573 22972 22972 1 LEFESLEALK Unmodified 1177.6231 0.62305505 2765 Q9NW15-2;Q9NW15;Q9NW15-3;Q9NW15-4 ANO10 Anoctamin-10 yes no 0 0 0 0 0 5.5 0.5 1 1 71.157 71.157 2;3 0.00063636 22406 TMT1-4 82.029 46.733 23.094 52.004 42.028 52.605 33.662 45.943 22 51 44 51 36 44 1 1 1 1 1 1 3354.4 11277 2765 11164 17574;17575 22973;22974 22973 2 LEFFDHK Unmodified 934.45487 0.45486751 2484 Q99704-2;Q99704 DOK1 Docking protein 1 yes no 0 0 0 0 0 6 0 1 54.117 54.117 3 0.003186 15748 TMT1-5 100.39 39.954 184.53 202.45 192.92 184.95 189.64 200.33 174 205 198 183 196 193 1 1 1 1 1 1 11458 11278 2484 11165 17576 22975 22975 1 LEFWCTDVK Unmodified 1196.5536 0.55359527 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 7 0 1 67.877 67.877 2 0.012328 20575 TMT1-6 85.731 35.69 122.92 167.42 118.29 92.706 158.75 126.59 116 167 123 94 160 123 1 1 1 1 1 1 14773 11279 2930 11166 17577 22976 22976 1 LEGAEINK Unmodified 872.46035 0.46034682 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 4.5 0.5 1 1 44.965 44.965 2 1.2354E-07 12318 TMT1-3 143.01 51.104 127.86 438.21 321.12 129.27 245.25 452.45 123 425 327 140 255 431 1 1 1 1 1 1 34741 11280 39 11167 17578;17579 22977;22978 22977 2 LEGDLKGPEVDIK Unmodified 1411.7559 0.75586013 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 55.379 55.379 3 0.00034357 16119 TMT1-4 88.507 19.677 224.64 342.44 186.19 142.99 233.59 286.48 212 339 198 145 239 275 1 1 1 1 1 1 21782 11281 1632 11168 17580 22979 22979 1 LEGDLTGPSVDVEVPDVELECPDAK Unmodified 2682.2582 0.2582077 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 0 1 75.374 75.374 4 0.017896 25202 TMT1-2 34.839 28.04 7.3379 22.749 9.8079 15.539 14.441 15.578 7 22 11 15 15 15 1 1 1 1 1 1 3952.2 11282 1632 11169 17581 22980 22980 1 LEGDLTGPSVGVEVPDVELECPDAK Unmodified 2624.2527 0.25272839 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3.5 0.5 1 1 74.372 74.372 3;4 4.5972E-19 23800 TMT1-3 106.35 86.599 46.591 65.198 49.077 43.97 63.653 67.474 44 65 51 44 65 65 2 2 2 2 2 2 14282 11283 1632 11170 17582;17583 22981;22982 22982 2 LEGDMATIQVYEETSGVSVGDPVLR Unmodified 2664.2953 0.29526191 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 4 0 1 77.546 77.546 3 0.011055 25085 TMT1-3 38.537 23.115 15.855 21.975 21.745 14.827 14.474 15.577 15 22 22 15 15 15 1 1 1 1 1 1 3455.5 11284 1057 11171 17584 22983 22983 1 LEGDSTDLSDQIAELQAQIAELK Unmodified 2486.2388 0.23879289 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 5.71 0.7 3 3 1 95.515 95.515 3;4 5.5945E-23 31099 TMT1-5 118.35 103.58 235.09 366.99 393.54 311.77 424.29 362.66 223 366 398 314 431 352 9 9 9 9 9 10 99971 11285 1019 11172 17585;17586;17587;17588;17589;17590;17591 22984;22985;22986;22987;22988;22989;22990;22991;22992;22993 22990 10 LEGEGFPSIPLLIDHLLSTQQPLTK Unmodified 2745.4953 0.49528234 532 P07332-3;P07332;P07332-2;P07332-4 FES Tyrosine-protein kinase Fes/Fps yes no 0 0 0 0 0 9 0 1 93.917 93.917 4 0.0040619 28870 TMT1-8 41.491 26.237 15.808 21.845 29.744 5.4753 21.427 38.831 15 22 29 7 22 37 1 1 1 1 1 1 1796.9 11286 532 11173 17592 22994 22994 1 LEGELKGPELDVK Unmodified 1425.7715 0.7715102 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 55.734 55.734 3 0.00024931 16299 TMT1-4 90.444 59.616 266.17 364.58 221.56 261.71 260.21 448.82 251 363 237 256 275 428 1 1 1 1 1 1 48643 11287 1632 11174 17593 22995 22995 1 LEGFHTQISK Unmodified 1158.6033 0.60332266 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 7.5 0.5 1 1 46.688 46.688 3 7.2616E-05 12219 TMT1-6 120.63 58.851 986.46 1601.4 1105.6 1086.9 1237 1269.5 933 1585 1160 1076 1272 1224 3 3 3 3 3 3 254670 11288 1603 11175 17594;17595 22996;22997;22998 22996 3 LEGGEVDLK Unmodified 958.49713 0.49712625 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 51.735 51.735 2 0.0072865 14953 TMT1-3 93.178 33.159 175.46 411.25 277.78 185.74 227.72 217.36 167 402 288 189 233 210 1 1 1 1 1 1 23668 11289 1632 11176 17596 22999 22999 1 LEGGSGGDSEVQR Unmodified 1289.5848 0.58477206 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 2 0 1 32.729 32.729 2 9.5753E-08 8091 TMT1-1 122.55 97.756 23.173 44.67 34.872 28.802 43.426 37.137 22 44 36 29 44 36 1 1 1 1 1 1 5106.2 11290 1416 11177 17597 23000 23000 1 LEGIVNK Unmodified 771.44905 0.44905385 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 7 0 1 51.335 51.335 3 0.023617 14029 TMT1-6 64.567 44.78 224.29 296.13 284.27 262.58 247.89 319.12 212 297 291 260 259 306 1 1 1 1 1 1 13749 11291 2465 11178 17598 23001 23001 1 LEGLDTGWNALGR Unmodified 1400.7048 0.70482762 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 67.375 67.375 3 0.0074882 21001 TMT1-5 41.317 24.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11292 651 11179 17599 23002 23002 1 LEGLQEK Unmodified 815.43888 0.43888309 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 0 5 0 1 46.356 46.356 2 0.0081516 12560 TMT1-4 119.27 34.211 691.35 746.22 754.12 617.61 687.01 824.67 652 757 767 618 711 792 1 1 1 1 1 1 65789 11293 2363 11180 17600 23003 23003 1 LEGNSPQGSNQGVK Unmodified 1413.6848 0.68482046 1366 P61006 RAB8A Ras-related protein Rab-8A yes yes 0 0 0 0 0 5 0 1 37.422 37.422 3 3.9022E-17 8999 TMT1-4 148.57 106.93 99.211 161.2 140.83 132.16 139.88 166.57 94 160 145 131 145 160 1 1 1 1 1 1 23776 11294 1366 11181 17601 23004 23004 1 LEGNTVGVEAAR Unmodified 1214.6255 0.62551466 1124 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 0 3 0 1 42.11 42.11 2 2.4068E-07 12158 TMT1-2 126.34 81.524 30.509 82.524 32.233 36.229 63.716 76 29 80 36 36 65 73 1 1 1 1 1 1 6008.9 11295 1124 11182 17602 23005 23005 1 LEGPDVSLK Unmodified 956.51786 0.51786169 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 54.07 54.07 2 0.0011055 15600 TMT1-4 124.23 66.949 114.84 220.31 169.42 113.35 177.67 187.88 109 217 174 116 181 181 1 1 1 1 1 1 14206 11296 1632 11183 17603 23006 23006 1 LEGPNNVECTTSGR Unmodified 1532.6889 0.68891956 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 2.33 0.471 2 1 39.125 39.125 2;3 2.0825E-05 10651 TMT1-1 102.33 75.817 130.65 203.31 231.46 150.66 147.31 181.28 124 203 232 153 152 174 3 3 3 3 2 3 48680 11297 733 11184 17604;17605;17606 23007;23008;23009 23008 3 LEGQRPENK Unmodified 1069.5516 0.55162144 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 1 4.5 0.5 1 1 29.51 29.51 3 0.005035 5889 TMT1-4 82.749 44.663 561.3 770.51 589.61 479.19 722.48 616.85 530 769 610 483 732 598 2 2 2 2 2 2 63611 11298 936 11185 17607;17608 23010;23011 23011 2 LEGSAPTDVLDSLTTIPELK Unmodified 2098.1045 0.10453124 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5.14 1.88 1 3 1 2 85.424 85.424 3;4 9.3199E-36 28171 TMT1-5 159.26 146.22 1287.9 1497.2 1227 1165.1 1051.4 1756.6 1214 1508 1271 1151 1114 1676 11 12 12 12 12 12 450580 11299 2112 11186 17609;17610;17611;17612;17613;17614;17615 23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023 23019 12 LEGSAPTDVLDSLTTIPELKDHLR Unmodified 2619.3756 0.37556114 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 6 0 1 75.675 75.675 4 2.8145E-23 24315 TMT1-5 122.18 112.2 326.03 440.81 193.94 286.55 189.24 532.93 307 438 217 276 211 505 2 2 2 2 2 2 97394 11300 2112 11187 17616 23024;23025 23025 2 LEGSDVQLLEYEASAAGLIR Unmodified 2133.0954 0.095363533 2782 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 4.33 0.471 2 1 83.681 83.681 2;3 7.083E-07 27587 TMT1-3 82.609 68.777 46.532 88.778 39 68.388 40.286 75.602 44 87 44 65 44 72 3 3 3 2 2 2 21963 11301 2782 11188 17617;17618;17619 23026;23027;23028 23027 3 LEGTNVQEAQK Unmodified 1215.6095 0.60953025 2419 Q96I99 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes yes 0 0 0 0 0 4 0 1 40.875 40.875 2 1.4446E-06 10665 TMT1-3 139.32 82.777 77.274 109.35 84.643 57.021 70.623 90.727 73 109 87 58 73 87 1 1 1 1 1 1 7661.5 11302 2419 11189 17620 23029 23029 1 LEGTVWTEIDDTK Unmodified 1505.725 0.72495394 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 4 0 1 68.62 68.62 2 1.4429E-07 21591 TMT1-3 101.56 76.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11303 3011 11190 17621 23030 23030 1 LEGVEGVAHIIDPK Unmodified 1475.7984 0.79839365 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 63.177 63.177 3 0.00015038 19151 TMT1-4 81.904 43.116 92.147 131.65 90.859 55.787 116.51 65.965 87 131 94 58 116 65 1 1 1 1 1 1 13068 11304 1763 11191 17622 23031 23031 1 LEGVLAEVAQHYQDTLIR Unmodified 2054.0797 0.07965389 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7.33 0.471 2 1 79.711 79.711 3;4 3.1762E-28 25253 TMT1-6 166.9 146.86 161.81 241.24 191.81 136 181.01 303.97 153 240 197 138 189 290 4 4 4 4 4 4 71637 11305 1139 11192 17623;17624;17625 23032;23033;23034;23035 23033 4 LEHAAALR Unmodified 879.49265 0.49265 1943 Q4V328-4;Q4V328;Q4V328-2;Q4V328-3 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 5 0 1 31.802 31.802 3 0.0013407 6771 TMT1-4 103.83 56.751 30.495 74.931 40.979 44.443 64.144 52.536 29 73 44 44 65 51 1 1 1 1 1 1 4936 11306 1943 11193 17626 23036 23036 1 LEHAFSK Unmodified 830.42865 0.42865276 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 7 0 1 41.07 41.07 3 0.016992 9987 TMT1-6 71.342 35.157 108.12 130.2 113.31 86.248 111.11 182.31 102 131 116 87 116 174 1 1 1 1 1 1 4977 11307 1138 11194 17627 23037 23037 1 LEHALEK Unmodified 838.45487 0.45486751 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 5 0 1 39.731 39.731 3 0.0072705 9891 TMT1-4 87.323 18.408 307.55 379.87 285.73 253.36 384.71 398.37 290 381 297 254 392 384 2 2 2 2 2 2 31989 11308 1229 11195 17628 23038;23039 23038 2 LEHEYIHNFK Unmodified 1328.6513 0.65133548 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 no no 0 0 0 0 0 6 0 1 41.934 41.934 4 9.1811E-05 10912 TMT1-5 112.36 87.504 420.96 491.15 427.45 261.14 451.71 355.95 397 495 435 270 455 346 1 1 1 1 1 1 79251 11309 1862 11196 17629 23040 23040 1 LEHEYIQNFK Unmodified 1319.651 0.65100113 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 5.67 0.471 1 2 48.903 48.903 3;4 7.4742E-05 13670 TMT1-4 120.09 82.91 401.9 527.9 533.42 409.55 535.23 466.56 380 530 541 413 545 452 3 3 3 3 3 3 98951 11310 1868 11197 17630;17631;17632 23041;23042;23043 23041 3 LEHLQEK Unmodified 895.47633 0.47633123 1806 Q14BN4;Q14BN4-7;Q14BN4-6 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 5 0 1 36.44 36.44 3 0.0021468 8617 TMT1-4 105.39 24.094 107.31 190.56 197.2 65.026 160.03 126.55 102 189 196 73 160 123 1 1 1 1 1 1 10246 11311 1806 11198 17633 23044 23044 1 LEHQGIK Unmodified 823.4552 0.45520186 1937 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 0 0 0 0 0 5 0 1 32.853 32.853 3 0.0098917 7189 TMT1-4 81.297 67.789 61.431 94.963 54.463 51.306 63.316 67.483 58 94 58 51 65 65 1 1 1 1 1 1 2689.7 11312 1937 11199 17634 23045 23045 1 LEICNLTPDALK Unmodified 1385.7225 0.72245152 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 6 0 1 68.138 68.138 3 0.00061306 21239 TMT1-5 82.362 61.111 53.957 56.725 80.662 49.901 54.988 98.635 51 58 80 51 58 94 1 1 1 1 1 1 43550 11313 536 11200 17635 23046 23046 1 LEIEPEWAYGK Unmodified 1333.6554 0.65541781 1541 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 0 5 0 1 67.326 67.326 3 0.0041858 20808 TMT1-4 70.942 43.293 129.51 226.95 222.12 158.48 168.06 224.39 123 225 225 160 175 215 1 1 1 1 1 1 18126 11314 1541 11201 17636 23047 23047 1 LEILQIHTK Unmodified 1093.6495 0.64954457 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 8 0 1 55.937 55.937 3 0.00012295 15905 TMT1-7 132.32 101.03 1412.6 2019.6 1803.6 1445.9 1790.6 2028.7 1336 2016 1845 1452 1842 1951 2 2 2 2 2 2 367330 11315 1311 11202 17637 23048;23049 23048 2 LEILQLLK Unmodified 968.62702 0.62701821 2367 Q96AZ6 ISG20 Interferon-stimulated gene 20 kDa protein yes yes 0 0 0 0 0 9 0 1 81.796 81.796 2 0.020023 24237 TMT1-8 78.516 20.322 46.64 65.333 40.783 59.933 54.784 91.179 44 65 44 58 58 87 1 1 1 1 1 1 6171.5 11316 2367 11203 17638 23050 23050 1 LEILQQQLQVANEAR Unmodified 1751.953 0.95299681 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 7 0 1 68.431 68.431 3 6.6815E-11 20797 TMT1-6 103.79 84.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11317 1805 11204 17639 23051 23051 1 LEILTNLANEANISTLLR Unmodified 1997.1157 0.11570504 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 92.159 92.159 2 0.021995 28201 TMT1-8 46.88 21.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11318 51 11205 17640 23052 23052 1 LEINFEELLK Unmodified 1246.6809 0.68090428 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 6.33 0.471 2 1 82.223 82.223 2;3 0.00016562 26832 TMT1-5 104.79 49.394 161.23 125.05 207.09 119.45 140.74 188.93 152 131 204 123 146 181 3 3 3 3 3 3 34344 11319 1635 11206 17641;17642;17643 23053;23054;23055 23054 3 LEKETTEHK Unmodified 1113.5666 0.5666028 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 1 5 0 1 31.328 31.328 4 0.021647 6598 TMT1-4 58.978 30.773 99.721 91.381 114.32 116.86 165.74 104 94 94 116 116 167 102 1 1 1 1 1 1 4610.7 11320 3011 11207 17644 23056 23056 1 LEKHELIEFR Unmodified 1312.7139 0.71393574 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 6 0 1 46.807 46.807 4 0.0013432 12861 TMT1-5 90.306 74.735 306.86 438.37 353.53 377.05 392.73 425.85 290 437 368 371 406 410 2 2 2 2 2 2 19230 11321 1540 11208 17645 23057;23058 23057 2 LELADYEAENLAR Unmodified 1505.7362 0.73618733 1200 P49758-2;P49758-6;P49758-11;P49758-7;P49758-10;P49758-9;P49758-16;P49758-5;P49758-8;P49758-3;P49758;P49758-13;P49758-14;P49758-15;P49758-12 RGS6 Regulator of G-protein signaling 6 yes no 0 0 0 0 0 3 0 1 63.593 63.593 3 0.0002102 20615 TMT1-2 87.831 61.233 23.113 67.168 25.911 29.647 26.875 61.061 22 65 29 29 29 58 1 1 1 1 1 1 5617.6 11322 1200 11209 17646 23059 23059 1 LELEQTYQAK Unmodified 1221.6241 0.62411768 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 5 0 1 52.472 52.472 3 0.00023642 14965 TMT1-4 103.26 48.191 107.9 168.46 116.48 133.63 139.04 188.98 102 167 123 131 145 181 1 1 1 1 1 1 14171 11323 1577 11210 17647 23060 23060 1 LELFGCDIY Unmodified 1128.5161 0.51614714 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 5 0 1 86.995 86.995 2 0.0019035 28518 TMT1-4 110.61 98.657 46.378 80.795 71.658 50.434 55.22 91.166 44 80 73 51 58 87 2 2 2 2 2 2 27404 11324 666 11211 17648 23061;23062 23062 2 LELFLPEEYPMAAPK Unmodified 1746.8902 0.89024513 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 0 7 0 1 81.417 81.417 3 8.6667E-05 25901 TMT1-6 82.102 48.154 115.59 120.95 127.29 148.54 125.27 143.53 109 123 131 145 131 138 2 2 2 2 2 2 22157 11325 1377 11212 17649 23063;23064 23063 2 LELFLPEEYPMAAPK Oxidation (M) 1762.8852 0.88515975 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 1 0 0 7 0 1 76.505 76.505 3 0.0021372 23974 TMT1-6 50.155 27.549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11326 1377 11212 17650 23065 23065 224 1 LELLAAYEEVIR Unmodified 1417.7817 0.78168095 1897 Q16643;Q16643-3 DBN1 Drebrin yes no 0 0 0 0 0 6 0 2 82.36 82.36 2;3 2.3408E-08 26820 TMT1-5 140.3 88.773 78.71 71.431 55.844 74.339 54.671 75.192 74 73 59 72 58 72 2 2 2 2 2 2 24383 11327 1897 11213 17651;17652 23066;23067 23066 2 LELLECIR Unmodified 1044.5638 0.56376603 146 O15382;O15382-2 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial yes no 0 0 0 0 0 2 0 1 52.703 52.703 2 0.019801 15969 TMT1-1 89.123 23.81 68.982 87.004 54.575 58.667 78.389 75.581 65 87 58 58 80 73 1 1 1 1 1 1 8270.4 11328 146 11214 17653 23068 23068 1 LELLIDKTENLVDSSVTFK Unmodified 2163.1675 0.16746584 1255 P51809;P51809-3 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 1 7.67 0.471 1 2 92.461 92.461 3;4 7.0976E-10 29963 TMT1-6 99.569 83.627 109.41 122.11 83.012 72.828 107.04 105.68 103 123 87 73 109 102 3 3 3 3 3 3 10398 11329 1255 11215 17654;17655;17656 23069;23070;23071 23069 3 LELLLQIANK Unmodified 1153.7071 0.70705945 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 9 0 1 83.59 83.59 3 0.026799 24928 TMT1-8 45.973 16.625 15.728 29.179 36.897 5.0479 21.483 37.763 15 29 36 7 22 36 1 1 1 1 1 1 3634.3 11330 2935 11216 17657 23072 23072 1 LELLLSAGDSGTFFCK Unmodified 1756.8706 0.87057232 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 9 0 1 85.427 85.427 3 1.9409E-06 25723 TMT1-8 90.853 68.655 84.808 85.156 101.28 79.677 91.825 82.66 80 87 102 80 94 80 2 2 2 2 2 2 9022.1 11331 377 11217 17658 23073;23074 23074 2 LELMDIIAENVLSEDR Unmodified 1858.9346 0.93462914 2365 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 0 5 0 1 96.007 96.007 3 0.0073589 31911 TMT1-4 52.372 35.293 7.4384 14.394 23.544 21.953 36.668 29.868 7 14 22 22 37 29 1 1 1 2 2 2 1779.5 11332 2365 11218 17659 23075;23076 23076 2 LELQEAQDQR Unmodified 1228.6048 0.60477922 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 2 0 1 43.039 43.039 3 0.00012523 12164 TMT1-1 82.417 52.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11333 2851 11219 17660 23077 23077 1 LELQGPR Unmodified 811.4552 0.45520186 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 5 0 1 42.549 42.549 2 3.7328E-05 11043 TMT1-4 162.31 82.012 450.15 541.59 347.71 498.24 592.26 789 424 543 374 485 614 756 1 1 1 1 1 1 66719 11334 786 11220 17661 23078 23078 1 LELQGVK Unmodified 785.4647 0.46470391 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 6 0 1 51.001 51.001 2 0.042231 14405 TMT1-5 85.212 22.064 56.443 649.87 422.54 320.18 466.4 428.02 58 621 440 324 474 414 1 1 1 1 1 1 121560 11335 2688 11221 17662 23079 23079 1 LEMNLGLQK Unmodified 1044.5638 0.56376603 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 61.456 61.456 2 0.015388 18099 TMT1-6 81.525 38.307 115.19 167.33 155.25 138.54 161.74 191.53 109 167 159 138 167 184 1 1 1 1 1 1 11954 11336 1546 11222 17663 23080 23080 1 LENCNYAVELGK Unmodified 1408.6657 0.66566492 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 5 0 1 56.5 56.5 2 4.4801E-08 16550 TMT1-4 113.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11337 690;691 11223 17664 23081 23081 1 LENDQIESLR Unmodified 1215.6095 0.60953025 1332 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2 0 1 49.186 49.186 2 0.011717 14570 TMT1-1 81.799 11.41 61.306 103.25 68.486 89.704 69.377 83.3 58 102 73 87 73 80 1 1 1 1 1 1 10010 11338 1332 11224 17665 23082 23082 1 LENGEIETIAR Unmodified 1243.6408 0.64083038 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 2 0 1 50.542 50.542 2 2.354E-06 15118 TMT1-1 132.32 75.042 53.953 56.713 81.402 33.295 63.851 75.996 51 58 80 36 65 73 1 1 1 1 1 1 10618 11339 2697 11225 17666 23083 23083 1 LENIIVTDVDPK Unmodified 1354.7344 0.73439641 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 5 0 1 67.245 67.245 3 0.027048 20783 TMT1-4 49.487 24.695 53.727 87.385 93.336 64.155 70.551 83.267 51 87 94 65 73 80 1 1 1 1 1 1 8583.8 11340 2064 11226 17667 23084 23084 1 LENLEPEHEYK Unmodified 1399.662 0.66195975 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 3.5 0.5 1 1 46.669 46.669 3 3.1653E-07 13993 TMT1-2 137.88 83.407 276.43 379.81 287.64 213.89 384.95 383.44 261 379 297 218 390 370 2 2 2 2 2 2 37190 11341 570 11227 17668;17669 23085;23086 23085 2 LENLGIPEEELLR Unmodified 1523.8195 0.81952302 1557 Q01658 DR1 Protein Dr1 yes yes 0 0 0 0 0 4 0 1 71.769 71.769 2 8.6791E-11 22809 TMT1-3 143.31 91.873 22.817 82.534 62.64 58.89 40.979 68.121 22 80 65 58 44 65 1 1 1 1 1 1 10799 11342 1557 11228 17670 23087 23087 1 LENNHAQLLR Unmodified 1206.6469 0.64691881 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 4 2.16 1 1 1 36.286 36.286 3 3.2184E-07 8636 TMT1-5 161.51 137.05 529.33 685.73 443.94 442.46 522.05 562.88 499 685 469 438 537 542 3 3 3 3 3 3 112970 11343 372 11229 17671;17672;17673 23088;23089;23090 23090 3 LENWITSLAESQLQTR Unmodified 1887.969 0.96904081 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 8 0 1 85.244 85.244 2 0.0024236 27360 TMT1-7 71.558 45.546 7.3467 44.679 34.576 61.511 48.664 54.043 7 43 37 59 51 52 1 2 2 2 2 2 4703.4 11344 1073 11230 17674 23091;23092 23092 2 LENYPIPEPGPNEVLLR Unmodified 1949.0258 0.025827405 1544 Q00796;Q00796-2 SORD Sorbitol dehydrogenase yes no 0 0 0 0 0 5 0 1 69.236 69.236 3 0.013584 21540 TMT1-4 47.047 32.125 54.266 50.03 34.385 29.004 34.234 60.851 51 51 36 29 36 58 1 1 1 1 1 1 7749.7 11345 1544 11231 17675 23093 23093 1 LEPDILLR Unmodified 967.57023 0.57023162 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 5 0 1 63.442 63.442 2 0.02794 19218 TMT1-4 83.265 24.483 68.541 133.27 89.427 88.445 69.984 67.293 65 131 94 87 73 65 1 1 1 1 1 1 25940 11346 1552 11232 17676 23094 23094 1 LEPEAWK Unmodified 871.44397 0.44396847 1536 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 0 0 0 6 0 1 54.114 54.114 2 0.027841 15786 TMT1-5 91.626 44.813 99.39 161.69 110.4 110.31 119.46 120.25 94 160 116 109 123 116 1 1 1 1 1 1 10761 11347 1536 11233 17677 23095 23095 1 LEPPWINVLQEDSVTLTCQGAR Unmodified 2525.2584 0.25842289 669 P12318-2;P12318 FCGR2A Low affinity immunoglobulin gamma Fc region receptor II-a yes no 0 0 0 0 0 6 0 1 83.995 83.995 3 0.0001262 27581 TMT1-5 60.464 46.305 15.704 45.301 27.264 29.551 27.686 37.586 15 44 29 29 29 36 1 1 1 1 1 1 6589.7 11348 669 11234 17678 23096 23096 1 LEPQIASASEYAHR Unmodified 1570.774 0.77396981 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 0 4 0 1 45.1 45.1 3 1.0823E-10 12342 TMT1-3 125.73 103.5 46.687 65.464 32.794 44.774 72.505 52.297 44 65 36 44 73 51 1 1 1 1 1 1 16634 11349 231 11235 17679 23097 23097 1 LEPVPLK Unmodified 794.49019 0.49019038 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 54.149 54.149 2 0.042111 15809 TMT1-5 85.265 35.24 129.78 208.27 192.84 136.43 154.86 211.98 123 207 196 138 161 203 1 1 1 1 1 1 25183 11350 1666 11236 17680 23098 23098 1 LEQDEYALR Unmodified 1135.551 0.55095274 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 2.5 0.5 1 1 47.515 47.515 2 6.6509E-14 13968 TMT1-1 188.98 118.31 207.73 276.33 199.06 260.65 271.83 355.75 196 276 211 254 283 341 3 3 3 3 3 3 56474 11351 1312 11237 17681;17682 23099;23100;23101 23099 3 LEQDRDYTR Unmodified 1194.5629 0.56291441 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 2 0 1 30.579 30.579 3 0.032681 7188 TMT1-1 58.955 38.008 37.632 135.98 52.103 51.738 47.831 91.377 36 131 58 51 51 87 1 1 1 1 1 1 6226.8 11352 325 11238 17683 23102 23102 1 LEQEHTNR Unmodified 1025.489 0.48902118 2628 Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 0 2 0 1 21.098 21.098 3 0.032395 3667 TMT1-1 53.775 32.268 7.3451 15.214 14.992 6.4725 15.151 7.0297 7 15 15 7 15 7 1 1 1 1 1 1 689.27 11353 2628 11239 17684 23103 23103 1 LEQELFSGGNTGINFEK Unmodified 1881.9109 0.91085723 82 O00571-2;O00571;O15523-2;O15523;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 5.67 0.471 1 2 71.933 71.933 3;4 9.7286E-14 22598 TMT1-5 119.51 95.707 177.13 201.11 175.76 159.84 242.51 247.85 167 203 181 160 247 239 3 3 3 3 3 3 29142 11354 82 11240 17685;17686;17687 23104;23105;23106 23105 3 LEQENDDLAHELVTSK Unmodified 1839.885 0.88503641 3004 Q9Y3P9;B7ZAP0;Q5R372-7;Q5R372-8;Q5R372-6;Q5R372-5 RABGAP1;RABGAP1L Rab GTPase-activating protein 1;Rab GTPase-activating protein 1-like, isoform 10;Rab GTPase-activating protein 1-like yes no 0 0 0 0 0 3 0 1 57.531 57.531 3 2.3278E-16 18239 TMT1-2 139.04 101.09 84.684 132.3 82.182 80.52 107.49 82.213 80 131 87 80 109 80 1 1 1 1 1 1 11218 11355 3004 11241 17688 23107 23107 1 LEQFVSILMASIPLPDK Unmodified 1900.038 0.037971996 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 9 0 1 109.95 109.95 3 8.0192E-09 34120 TMT1-8 92.993 61.603 107.21 126.42 88.167 72.991 145.63 108.84 101 127 92 73 146 106 3 3 3 2 3 3 24685 11356 394 11242 17689 23108;23109;23110 23109 3 LEQFVSILMASIPLPDK Oxidation (M) 1916.0329 0.032886618 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 0 0 9 0 1 109.88 109.88 3 0.012915 34109 TMT1-8 46.543 32.711 0 7.3831 3.885 0 0 4.264 0 7 4 0 0 4 0 1 1 0 0 1 1702.2 11357 394 11242 17690 23111 23111 43 1 LEQFVSILMASIPLPDKAS Unmodified 2058.1071 0.10711419 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 1 9 0 1 109.68 109.68 3 1.3012E-15 33964 TMT1-8 115.57 96.737 38.12 58.322 49.045 54.897 63.896 63.203 36 58 51 54 65 61 2 3 3 3 2 3 15899 11358 394 11243 17691 23112;23113;23114 23112 3 LEQIAAEQK Unmodified 1028.5502 0.55022446 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 5 0 1 48.464 48.464 3 0.0044473 13374 TMT1-4 76.85 50.993 176.36 301.51 219.45 209.76 181.64 278.37 167 298 229 207 192 266 1 1 1 1 1 1 25487 11359 2896 11244 17692 23115 23115 1 LEQLFQDEVAK Unmodified 1318.6769 0.67688153 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 69.704 69.704 3 0.0031376 21914 TMT1-5 74.46 43.896 46.639 73.964 33.68 13.44 50.398 67.852 44 73 36 15 51 65 1 1 1 1 1 1 4541.6 11360 1833 11245 17693 23116 23116 1 LEQLGIPR Unmodified 924.53927 0.53926584 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 53.892 53.892 2 0.0068845 15623 TMT1-5 103.87 55.757 315.61 458.77 307.01 227.12 433.82 343.66 298 456 320 232 436 334 3 3 3 3 3 3 45313 11361 1616 11246 17694;17695 23117;23118;23119 23117 3 LEQLKPR Unmodified 882.5287 0.52870115 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 8 0 1 41.831 41.831 3 0.016612 10391 TMT1-7 82.716 33.31 930.35 1147.3 1000.8 877.26 977.05 1108.5 878 1153 1029 874 1009 1066 2 2 2 2 2 2 69061 11362 3010;3014 11247 17696 23120;23121 23121 2 LEQLNQYPDFNNYLIFVLTK Unmodified 2471.2737 0.27366225 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 9 0 1 96.328 96.328 4 0.0003223 29764 TMT1-8 56.055 38.355 61.249 95.537 84.526 80.08 123.47 74.295 58 95 87 80 124 73 2 2 2 2 2 2 7626.9 11363 2336 11248 17697 23122;23123 23123 2 LEQQMAK Unmodified 846.42694 0.4269382 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 5.5 0.5 1 1 40.663 40.663 2 2.061E-05 10466 TMT1-5 130.34 61.917 123.08 144.13 110.69 124.73 165.35 165.84 116 145 116 123 169 160 1 1 1 1 1 1 15462 11364 2913 11249 17698;17699 23124;23125 23125 2 LEQSEAQLGR Unmodified 1129.5728 0.57275081 2329 Q92905 COPS5 COP9 signalosome complex subunit 5 yes yes 0 0 0 0 0 2.5 0.5 1 1 40.311 40.311 2 0.0008674 11191 TMT1-1 79.659 45.572 84.931 70.388 93.126 88.244 68.931 98.237 80 73 94 87 73 94 1 1 1 1 1 1 10553 11365 2329 11250 17700;17701 23126;23127 23126 2 LEQVSSDEGIGTLAENLLEALR Unmodified 2356.2122 0.21218421 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 5 0 1 98.042 98.042 3 0.0020232 32516 TMT1-4 48.489 26.014 7.4333 11.142 3.622 0 7.0727 7.2602 7 11 4 0 7 7 1 1 1 0 1 1 1299.5 11366 1977 11251 17702 23128 23128 1 LEQYTSAIEGTK Unmodified 1338.6667 0.66671078 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 5.5 0.5 1 1 57.838 57.838 3 0.00016462 17063 TMT1-4 94.122 69.83 300.27 432.83 202.25 308.03 241.36 539.97 283 429 225 297 262 513 3 3 3 3 3 3 37965 11367 1597 11252 17703;17704 23129;23130;23131 23129 3 LESAGLGYR Unmodified 964.49779 0.49779495 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 5 0 1 45.408 45.408 2 0.011982 12188 TMT1-4 86.205 47.883 69.021 79.558 54.284 75.226 70.592 67.276 65 80 58 73 73 65 1 1 1 1 1 1 5049.8 11368 1999 11253 17705 23132 23132 1 LESCGVTSDNCR Unmodified 1396.5711 0.57111261 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 2.5 0.5 1 1 35.72 35.72 2;3 1.3787E-13 9610 TMT1-2 174.87 161.69 69.159 48.644 57.198 51.414 48.909 60.432 65 51 58 51 51 58 1 1 1 1 1 1 10084 11369 681 11254 17706;17707 23133;23134 23134 2 LESDVSAQMEYCR Oxidation (M) 1602.6654 0.66540692 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 1 0 0 2.5 0.5 1 1 43.658 43.658 2;3 0.00012168 12665 TMT1-2 99.498 94.95 101 84.336 84.998 80.066 122.7 96.703 95 87 87 80 124 94 2 2 2 2 2 2 30209 11370 438 11255 17708;17709 23135;23136 23136 52 2 LESDVSAQMEYCR Unmodified 1586.6705 0.6704923 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 2.5 0.5 1 1 51.557 51.557 3 9.6965E-29 15842 TMT1-2 198.14 170.47 451.91 586.95 554.62 431.35 587.54 711.31 427 589 565 435 604 683 5 5 5 5 5 5 281400 11371 438 11255 17710;17711 23137;23138;23139;23140;23141 23140 5 LESDYEILER Unmodified 1265.6139 0.61394692 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2 0 1 58.661 58.661 2 0.012439 18341 TMT1-1 80.755 50.77 30.592 66.566 31.758 68.38 41.056 53.194 29 65 36 65 44 51 1 1 1 1 1 1 4362 11372 1085 11256 17712 23142 23142 1 LESDYTSFLEAK Unmodified 1401.6664 0.66637643 1914 Q17RC7 EXOC3L4 Exocyst complex component 3-like protein 4 yes yes 0 0 0 0 0 5 0 1 69.402 69.402 3 0.011163 21613 TMT1-4 57.802 35.929 30.733 44.294 26.92 36.939 42.758 45.684 29 44 29 36 44 44 1 1 1 1 1 1 6039.5 11373 1914 11257 17713 23143 23143 1 LESGSICK Unmodified 892.43242 0.43241751 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 0 5 0 1 42.745 42.745 2 0.016752 11159 TMT1-4 91.318 42.814 53.598 125.88 82.377 88.319 98.998 105.91 51 123 87 87 102 102 1 1 1 1 1 1 12418 11374 718 11258 17714 23144 23144 1 LESLSYQLSGLQK Unmodified 1464.7824 0.78240924 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 8 0 2 67.967 67.967 2;3 5.3769E-21 20658 TMT1-7 181.66 116.03 131.35 181.51 132.59 116.12 147.14 189.81 124 181 138 116 152 182 2 2 2 2 2 2 72485 11375 1577 11259 17715;17716 23145;23146 23145 2 LESVHIILR Unmodified 1078.6499 0.64987892 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 7 0 1 52.273 52.273 3 6.1989E-05 14418 TMT1-6 96.034 56.371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11376 2876 11260 17717 23147 23147 1 LETALLPTVLIK Phospho (STY) 1389.7884 0.78841961 1348 P59510-2;P59510-3;P59510 ADAMTS20 A disintegrin and metalloproteinase with thrombospondin motifs 20 yes no 0 0 0 1 0 9 0 1 50.44 50.44 3 0.025426 11996 TMT1-8 57.175 10.469 160.93 213.78 183.34 168.77 150.82 255.8 152 214 189 167 160 244 1 1 1 1 1 1 16330 11377 1348 11261 17718 23148 23148 15 1 LETFLSLLVQNLAPAETHT Unmodified 2096.1154 0.11537069 1181 P49441 INPP1 Inositol polyphosphate 1-phosphatase yes yes 0 0 0 0 0 9 0 1 107.89 107.89 3 1.4215E-07 33556 TMT1-8 72.446 56.562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11378 1181 11262 17719 23149 23149 1 LETGAPRPPATVTNAVSWR Unmodified 2022.0647 0.064672527 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 1 8 0 2 52.7 52.7 3 3.7646E-08 14621 TMT1-7 79.182 50.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11379 2569 11263 17720;17721 23150;23151 23150 2 LETGQFLTFR Unmodified 1210.6346 0.63462279 2 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 8 0 1 64.869 64.869 2 0.012258 19455 TMT1-7 81.017 45.136 77.567 78.866 61.223 89.438 106.57 97.163 73 80 65 87 109 94 1 1 1 1 1 1 9082.2 11380 2 11264 17722 23152 23152 1 LETTLAGIK Unmodified 944.55425 0.5542472 2143 Q8IX19 MCEMP1 Mast cell-expressed membrane protein 1 yes yes 0 0 0 0 0 7 0 1 58.926 58.926 2 4.8161E-09 17007 TMT1-6 175.44 63.274 84.476 146.83 104.81 87.281 83.084 113.82 80 145 109 87 87 109 1 1 1 1 1 1 8306.8 11381 2143 11265 17723 23153 23153 1 LETTLALQK Unmodified 1015.5914 0.59136099 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 1 57.193 57.193 2 0.00069044 16338 TMT1-6 130.75 22.178 161.22 187.62 155.59 122.54 139.81 181.49 152 189 160 123 145 174 1 1 1 1 1 1 15794 11382 651 11266 17724 23154 23154 1 LETTSNQDNLAPITAK Unmodified 1714.8737 0.87374344 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 5 0 2 54.589 54.589 3;4 2.454E-43 15814 TMT1-4 173.71 132.14 161.02 238.87 145.71 153.99 184.16 218.6 152 237 155 152 190 210 1 1 1 1 1 1 18296 11383 856 11267 17725;17726 23155;23156 23156 2 LETTWMTAVGLSEMAAEAAYQTGADQASITAR Unmodified 3343.5701 0.57005656 2720 Q9NR28-2;Q9NR28-3;Q9NR28 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 0 7 0 1 99.808 99.808 4 0.033325 32543 TMT1-6 24.769 18.928 0 14.802 5.6349 23.593 6.2382 0 0 14 7 22 7 0 0 1 1 1 1 0 1163.9 11384 2720 11268 17727 23157 23157 1 LEVAPISDIIAIK Unmodified 1380.8228 0.82281749 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0 1 79.418 79.418 3 2.4874E-06 25115 TMT1-6 113.24 69.248 137.21 266.88 157.48 146.09 160.15 227.82 130 262 167 145 167 218 2 2 2 2 2 2 46943 11385 693 11269 17728 23158;23159 23159 2 LEVDIDIK Unmodified 943.52261 0.52261272 437 P02671;P02671-2;CON__P02672 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5 0 1 63.802 63.802 2 0.0085241 19386 TMT1-4 101.72 39.257 108.62 91.66 61.712 57.704 106.97 128.07 102 94 65 58 109 123 1 1 1 1 1 1 10749 11386 437 11270 17729 23160 23160 1 LEVDYSIGR Unmodified 1050.5346 0.53457439 2850 Q9UBW8 COPS7A COP9 signalosome complex subunit 7a yes yes 0 0 0 0 0 4 0 1 54.04 54.04 2 0.017435 15854 TMT1-3 79.059 35.324 108.34 122.2 81.985 95.882 104.92 136.65 102 123 87 94 109 131 1 1 1 1 1 1 15377 11387 2850 11271 17730 23161 23161 1 LEVEANNAFDQYR Unmodified 1567.7267 0.72668527 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 4 0 1 57.34 57.34 2 6.7249E-06 17166 TMT1-3 115.04 90.245 46.681 65.447 33.831 21.517 27.249 61.05 44 65 36 22 29 58 1 1 1 1 1 1 9945.4 11388 1144;1145 11272 17731 23162 23162 1 LEVLQSQK Unmodified 943.53385 0.53384611 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 7 0 1 51.08 51.08 2 0.0040074 13944 TMT1-6 128.12 40.94 84.533 115.69 121.58 92.943 135.71 127.25 80 116 123 94 138 123 1 1 1 1 1 1 10078 11389 936 11273 17732 23163 23163 1 LEVNLQAMK Unmodified 1044.5638 0.56376603 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 7.5 1.12 1 1 1 1 60.508 60.508 2 1.131E-05 17769 TMT1-7 156.94 70.927 2232.6 3165 2599.9 2069.5 2722.9 3287.7 2110 3157 2674 2082 2802 3157 5 5 5 5 5 5 546680 11390 1019 11274 17733;17734;17735;17736 23164;23165;23166;23167;23168 23167 5 LEWHPFTLTSAPEEDFFSIHIR Unmodified 2671.3071 0.30708764 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 7 0 1 77.457 77.457 4 5.3114E-09 24287 TMT1-6 80.236 74.786 38.008 65.788 48.4 59.341 62.14 90.969 36 65 51 58 65 87 1 1 1 1 1 1 6411.6 11391 477 11275 17737 23169 23169 1 LEWLSLLSDAEK Unmodified 1402.7344 0.73439641 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 7.5 0.5 1 1 86.778 86.778 3 6.0511E-06 27861 TMT1-7 112.84 95.25 92.385 84.826 90.48 127.35 90.387 91.229 87 87 94 123 95 88 2 2 2 2 2 2 19354 11392 2525 11276 17738;17739 23170;23171 23171 2 LEWLTLMPNASNLDK Unmodified 1743.8866 0.88655673 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 8 0 1 83.433 83.433 3 0.003098 26694 TMT1-7 61.732 39.011 23.181 52.247 27.164 21.604 43.757 37.127 22 51 29 22 44 36 1 1 1 1 1 1 3481.7 11393 3 11277 17740 23172 23172 1 LEYCEALAMLR Unmodified 1367.6577 0.65774277 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 70.707 70.707 2 0.0054234 22259 TMT1-5 86.18 45.193 38.151 43.521 43.208 35.835 49.882 52.943 36 44 44 36 51 51 1 1 1 1 1 1 10017 11394 714 11278 17741 23173 23173 1 LFAAYNEGIINLLEK Unmodified 1706.9243 0.92432245 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 0 8 0 1 87.663 87.663 3 0.00055804 28282 TMT1-7 73.722 54.664 38.127 58.562 34.632 13.792 28.667 30.096 36 58 36 15 29 29 1 1 1 1 1 1 3171 11395 1710 11279 17742 23174 23174 1 LFACSNK Unmodified 838.40072 0.40072345 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 9 0 1 46.555 46.555 2 0.0090933 10378 TMT1-8 126.2 57.111 1234.3 1442.2 1419.6 1220.4 1568.3 1982.8 1165 1456 1448 1221 1618 1902 2 2 2 2 2 2 315130 + 11396 506 11280 17743 23175;23176 23175 2 LFADAVQELLPQYK Unmodified 1633.8716 0.87155859 1004 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 0 8 0 1 86.135 86.135 3 2.3148E-05 27676 TMT1-7 76.262 47.456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11397 1004 11281 17744 23177 23177 1 LFAELEIK Unmodified 961.54843 0.54843354 314 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 0 6.5 0.5 1 1 70.786 70.786 2;3 0.014798 21726 TMT1-6 67.169 30.836 92.159 131.69 88.748 103.14 104.58 136.66 87 131 94 101 109 131 2 2 2 2 2 2 9720.7 11398 314 11282 17745;17746 23178;23179 23179 2 LFAQLAGDDMEVSATELMNILNK Unmodified 2522.2397 0.23966128 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 103.21 103.21 4 3.2046E-07 33321 TMT1-6 77.847 64.42 38.167 53.277 32.404 46.617 33.827 49.137 36 53 35 45 36 47 4 4 4 4 4 4 7502.9 11399 475 11283 17747;17748 23180;23181;23182;23183 23180 4 LFAQLAGDDMEVSATELMNILNK Oxidation (M) 2538.2346 0.23457591 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 1 0 0 8 0 1 93.046 93.046 4 3.9892E-05 30174 TMT1-7 64.203 37.449 7.1413 29.757 36.916 29.109 20.633 30.325 7 29 37 29 22 29 1 1 1 1 1 1 2282.4 11400 475 11283 17749 23184 23184 67 1 LFAQLAGEDAEISAFELQTILR Unmodified 2434.2744 0.27439053 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 6.5 0.5 1 1 99.202 99.202 3 2.1861E-17 32244 TMT1-6 106.42 93.572 27.705 13.082 21.3 11.178 0 4.264 26 14 21 11 0 4 3 2 3 2 0 1 4608.5 11401 761 11284 17750;17751 23185;23186;23187 23187 3 LFAQQCK Unmodified 893.44292 0.44292261 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 45.926 45.926 2 0.0016494 11945 TMT1-7 146.21 93.529 161.83 241.29 188.99 174.81 218.49 257.07 153 240 196 174 225 247 2 2 2 2 2 2 19752 11402 1702 11285 17752;17753 23188;23189 23188 2 LFAYPDTHR Unmodified 1118.5509 0.55089316 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6.5 0.5 1 1 45.414 45.414 3 0.0003709 12212 TMT1-5 110.41 89.538 307.02 452.86 313.49 260.5 323.91 392.64 290 450 327 261 334 377 3 3 3 3 3 3 68581 11403 457 11286 17754;17755 23190;23191;23192 23190 3 LFCDFGDEFEVLDTTGEEPK Unmodified 2347.0202 0.020209259 2 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 4 0 1 85.794 85.794 3 7.6603E-09 28254 TMT1-3 74.364 60.633 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11404 2 11287 17756 23193 23193 1 LFCLQLR Unmodified 948.52151 0.52150728 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 9 0 1 65.096 65.096 2 0.013222 17793 TMT1-8 110.23 71.993 222.92 307.23 325.82 213.64 277.18 262.85 211 308 328 218 283 254 2 2 2 2 2 2 50770 11405 1079 11288 17757 23194;23195 23195 2 LFDFLVEAINR Unmodified 1335.7187 0.71868677 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 9 0 1 92.859 92.859 2 0.00010754 28422 TMT1-8 106.35 65.324 68.927 79.298 70.236 81.809 76.828 59.636 65 80 73 80 79 58 2 2 2 2 2 2 14276 11406 44 11289 17758 23196;23197 23196 2 LFDFPGR Unmodified 850.43374 0.43373813 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 8 0 1 62.886 62.886 2 0.026335 18739 TMT1-7 92.677 64.972 68.508 140.73 88.66 95.602 98.663 105.92 65 138 94 94 102 102 1 1 1 1 1 1 16030 11407 2822 11290 17759 23198 23198 1 LFDFQGLQHQVAHVATQLEAAR Unmodified 2478.2768 0.27679057 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 74.478 74.478 4 5.785E-17 21425 TMT1-8 105.16 84.351 68.982 55.707 80.99 42.204 56.405 67.68 65 58 80 44 58 65 1 1 1 1 1 1 9654.1 11408 1120 11291 17760 23199 23199 1 LFDHAVSK Unmodified 915.48142 0.48141661 222 O60488-2;O60488 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 0 0 0 0 0 7 0 1 44.397 44.397 3 0.0054177 11281 TMT1-6 83.265 54.752 107.65 176.38 152.99 202.12 158.93 188.41 102 175 160 196 167 181 1 1 1 1 1 1 12243 11409 222 11292 17761 23200 23200 1 LFDHPESPTPNPTEPLFLAQAEVYK Unmodified 2839.4069 0.40686127 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 6 0 1 74.501 74.501 4 0.00061212 23771 TMT1-5 48.984 42.48 30.619 59.085 33.631 36.396 50.406 36.938 29 58 36 36 51 36 1 1 1 1 1 1 7676.7 11410 1176 11293 17762 23201 23201 1 LFDIFSQQVATVIQSR Unmodified 1850.989 0.98904797 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 89.801 89.801 3 1.7258E-24 27322 TMT1-8 159.75 130.77 116.33 151.24 157.94 123.95 115.37 251.48 110 152 160 124 124 239 3 3 3 3 3 3 30097 11411 2444 11294 17763 23202;23203;23204 23202 3 LFDQAFGLPR Unmodified 1162.6135 0.61349341 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 4.5 3.5 1 1 70.094 70.094 2 4.0595E-05 21373 TMT1-7 148.14 96.357 1233.2 1430 1266.4 1228.1 1238.8 2094.5 1163 1442 1306 1214 1307 1998 3 3 3 3 3 3 406590 11412 476 11295 17764;17765 23205;23206;23207 23206 3 LFDSDPITVTVPVEVSR Unmodified 1872.9833 0.98329389 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 5.67 0.471 1 2 75.796 75.796 2;3 7.4497E-25 24114 TMT1-4 151.18 112.11 91.61 169.01 149.42 99.814 147.08 213.27 87 167 152 102 152 204 2 2 2 2 2 2 91381 11413 639 11296 17766;17767;17768 23208;23209;23210 23208 3 LFDSICNNK Unmodified 1109.5175 0.51754412 480;577 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P09471-2;P08754 GNAI2;GNAI1;GNAO1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha no no 0 0 0 0 0 7.33 0.471 2 1 56.785 56.785 2;3 0.00023952 16155 TMT1-6 144.12 87.559 461.37 864.56 713.01 557.09 722.51 755.43 438 853 732 561 740 728 3 3 3 3 3 3 165150 11414 480;577 11297 17769;17770;17771 23211;23212;23213 23211 3 LFDSTTLEHQK Unmodified 1317.6565 0.65648044 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 7 1 1 1 49.845 49.845 3 0.00081849 14014 TMT1-5 88.596 64.787 497.67 938 501.37 565.79 697.99 817.96 471 921 541 557 719 786 3 3 3 3 3 3 32576 11415 1695 11298 17772;17773 23214;23215;23216 23214 3 LFDVAEGSTLEEVSNNCIR Unmodified 2152.0106 0.010647626 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 4 0 1 70.698 70.698 3 3.5311E-39 22391 TMT1-3 168.42 147.21 23.164 36.011 43.729 35.956 41.756 45.712 22 36 44 36 43 44 1 1 1 1 1 1 29790 11416 322 11299 17774 23217 23217 1 LFDYFPKPYPNSEAAR Unmodified 1913.9312 0.93119874 569 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 1 8.5 0.5 1 1 64.799 64.799 3 5.4725E-05 17603 TMT1-8 76.82 56.772 122.75 205.82 113.51 148.39 177.12 156.98 116 203 123 145 181 152 1 1 1 1 1 1 27346 11417 569 11300 17775;17776 23218;23219 23219 2 LFEAEAQDLFR Unmodified 1337.6616 0.66156582 2622 Q9H223 EHD4 EH domain-containing protein 4 yes yes 0 0 0 0 0 5 0 1 72.46 72.46 3 2.901E-05 22783 TMT1-4 110.84 89.079 30.739 51.865 19.53 22.617 14.116 15.587 29 51 22 22 15 15 1 1 1 1 1 1 3743.9 11418 2622 11301 17777 23220 23220 1 LFEAEEQDLFK Unmodified 1367.6609 0.66089712 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 71.747 71.747 3 0.00018812 22791 TMT1-3 100.69 63.507 53.475 110.43 116.17 54.849 86.187 66.831 51 109 116 58 87 65 1 1 1 1 1 1 12249 11419 2654 11302 17778 23221 23221 1 LFEAEEQDLFR Unmodified 1395.667 0.66704513 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 0 4 0 1 69.95 69.95 2 1.5175E-06 22053 TMT1-3 138.76 91.871 146.4 134.17 167.17 106.21 157.58 142.61 138 138 167 109 160 138 2 2 2 2 2 2 83848 11420 2802 11303 17779 23222;23223 23222 2 LFEALTVGQEK Unmodified 1233.6605 0.66050319 8 A2RUS2-2;A2RUS2 DENND3 DENN domain-containing protein 3 yes no 0 0 0 0 0 7 0 1 67.663 67.663 3 4.4519E-06 20506 TMT1-6 118.23 74.242 61.25 94.46 85.278 64.646 70.016 98.206 58 94 87 65 73 94 1 1 1 1 1 1 10874 11421 8 11304 17780 23224 23224 1 LFEASIETGDR Unmodified 1236.5986 0.59863121 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 4 0 1 56.02 56.02 3 0.00503 16651 TMT1-3 68.107 35.019 61.11 94.07 109.16 63.389 61.148 114.45 58 94 109 65 65 109 1 1 1 1 1 1 7120.8 11422 932 11305 17781 23225 23225 1 LFEDMGLFEAFK Unmodified 1445.6901 0.69008876 1776 Q14432 PDE3A cGMP-inhibited 3',5'-cyclic phosphodiesterase A yes yes 0 0 0 0 0 7 0 1 90.435 90.435 3 0.027155 29326 TMT1-6 49.448 26.212 15.822 29.439 20.96 22.408 20.685 37.786 15 29 22 22 22 36 1 1 1 1 1 1 4694.5 11423 1776 11306 17782 23226 23226 1 LFEELGK Unmodified 834.44872 0.4487195 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 6 0 1 62.033 62.033 2 0.010533 18925 TMT1-5 107.67 44.386 307.48 493.16 382.72 303.74 420.39 449.58 291 489 395 306 430 433 2 2 2 2 2 2 41165 11424 1009 11307 17783 23227;23228 23228 2 LFEELVR Unmodified 904.50182 0.5018177 707 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 0 0 6 0 1 63.706 63.706 2 0.029747 19575 TMT1-5 90.777 30.483 84.332 170.17 109.29 125.4 134.22 127.29 80 167 116 123 138 123 1 1 1 1 1 1 14321 11425 707 11308 17784 23229 23229 1 LFEFAGYDVLR Unmodified 1328.6765 0.6764876 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 77.843 77.843 2 0.00015579 24397 TMT1-6 110.53 47.054 84.66 108.49 106.4 103.31 97.796 120.87 80 109 109 102 102 116 2 2 2 2 2 2 22125 11426 1296 11309 17785 23230;23231 23230 2 LFEGNALLR Unmodified 1031.5764 0.57637963 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 0 7 0 1 61.281 61.281 2 0.0099864 17935 TMT1-6 88.948 53.068 176.35 284.2 236.65 211.37 215.71 228.36 167 282 244 210 223 220 1 1 1 1 1 1 52246 11427 1135 11310 17786 23232 23232 1 LFEISDIVIK Unmodified 1175.6802 0.680176 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 7 0 1 79.461 79.461 2 0.00047092 25098 TMT1-6 116.3 89.257 61.435 94.974 53.778 66.673 62.059 83.509 58 94 58 65 65 80 1 1 1 1 1 1 8511.3 11428 2740 11311 17787 23233 23233 1 LFELDPLTGEWHYK Unmodified 1746.8617 0.86172219 2583 Q9BZF1-3;Q9BZF1-2;Q9BZF1 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 0 7 0 1 74.504 74.504 3 5.0277E-11 23165 TMT1-6 127.78 98.801 46.51 64.973 62.869 74.714 70.616 67.275 44 65 65 73 73 65 1 1 1 1 1 1 9258.2 11429 2583 11312 17788 23234 23234 1 LFELLEK Unmodified 890.51132 0.51131975 217 O60264;P28370-2;P28370 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 0 0 0 0 0 7 0 1 74.541 74.541 2 0.019116 23162 TMT1-6 98.299 0 37.537 135.71 68.419 50.188 78.523 83.039 36 131 73 51 80 80 1 1 1 1 1 1 12619 11430 217 11313 17789 23235 23235 1 LFEMAYK Unmodified 900.44153 0.44152563 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 63.151 63.151 2 0.0081007 18774 TMT1-7 119.89 66.721 242.61 362.02 214.87 247.9 143.87 382.85 229 359 230 241 161 363 1 1 1 1 1 1 34978 11431 1058 11314 17790 23236 23236 1 LFEMVLGPAAYNVPLPK Unmodified 1858.0063 0.0062779369 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 9 0 2 88.484 88.484 3;4 6.9813E-10 26845 TMT1-8 97.223 76.023 77.229 140.53 65.768 74.419 77.115 91.607 73 138 72 73 80 88 2 2 2 2 2 2 15042 11432 1913 11315 17791;17792 23237;23238 23237 2 LFENQLVGPESIAHIGDVMFTGTADGR Unmodified 2873.4018 0.40179266 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 7.5 0.5 1 1 83.218 83.218 3 0.00012778 26580 TMT1-7 52.971 48.114 23.2 37.189 36.743 21.16 36.997 21.33 22 37 37 22 37 21 2 2 2 2 2 2 7505.2 11433 2697 11316 17793;17794 23239;23240 23240 2 LFEQILK Unmodified 889.5273 0.52730417 1746 Q14012;Q8IU85-2;Q8IU85 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D yes no 0 0 0 0 0 8 0 1 67.779 67.779 2 0.0075382 20566 TMT1-7 126.67 90.787 242.26 318.95 310.9 142 298.07 298.5 229 320 312 152 301 288 1 1 1 1 1 1 35185 11434 1746 11317 17795 23241 23241 1 LFEQNVQR Unmodified 1032.5352 0.53524309 1375 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 0 6 0 1 43.521 43.521 2 0.0041051 11582 TMT1-5 77.318 39.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11435 1375 11318 17796 23242 23242 1 LFEREPTK Unmodified 1018.5447 0.54474515 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 1 6 0 1 40.654 40.654 3 0.025206 10476 TMT1-5 68.224 41.125 130.8 120.44 96.494 134.34 164.17 126.43 123 123 102 131 167 123 1 1 1 1 1 1 7357 11436 1596 11319 17797 23243 23243 1 LFESSENIEDSNNPK Unmodified 1721.7744 0.77442332 1007 P34910;P34910-2 EVI2B Protein EVI2B yes no 0 0 0 0 0 4 0 1 54.532 54.532 3 0.00025406 16072 TMT1-3 77.431 67.851 122.6 166.52 173.31 97.615 188.33 172.65 116 167 174 102 190 167 1 1 1 1 1 1 14384 11437 1007 11320 17798 23244 23244 1 LFEVGGSPANTR Unmodified 1246.6306 0.63060004 1618;741 P16298-2;P16298-3;P16298;P16298-4;Q08209-3;Q08209-2;Q08209;Q08209-5 PPP3CB;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform no no 0 0 0 0 0 6 0 1 51.359 51.359 2 4.4036E-07 14677 TMT1-5 123.01 97.534 84.613 139.66 87.892 112.48 75.659 83.121 80 138 94 109 80 80 1 1 1 1 1 1 14640 11438 741;1618 11321 17799 23245 23245 1 LFEYGGFPPESNYLFLGDYVDR Unmodified 2597.2115 0.21145592 1413;1044 P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 0 6.25 0.433 3 1 90.965 90.965 3 1.9687E-09 29902 TMT1-5 72.145 63.326 170.05 133.74 160.78 101.81 121.07 145.79 160 139 161 104 125 140 6 6 6 6 6 6 12019 11439 1044;1413 11322 17800;17801;17802;17803 23246;23247;23248;23249;23250;23251;23252;23253 23249 8 LFEYILLYK Unmodified 1200.6794 0.67944771 2916 Q9UM22-3;Q9UM22 EPDR1 Mammalian ependymin-related protein 1 yes no 0 0 0 0 0 9 0 1 87.333 87.333 2 0.0028645 26380 TMT1-8 107.47 68.443 61.59 80.296 40.138 52.57 41.526 60.643 58 80 44 51 44 58 1 1 1 1 1 1 10523 11440 2916 11323 17804 23254 23254 1 LFEYKEDSK Unmodified 1157.5605 0.56045479 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 1 6 0 1 49.505 49.505 3 0.023459 13937 TMT1-5 63.408 29.626 375.75 572.8 562.76 373.43 503.34 560.21 356 571 569 381 516 539 1 1 1 1 1 1 24976 11441 389 11324 17805 23255 23255 1 LFFGPQHR Unmodified 1000.5243 0.52428448 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 9 0 1 45.06 45.06 3 0.00032155 9941 TMT1-8 134.66 78.653 215.24 189.48 272.47 234.98 241.8 320.36 203 196 273 234 252 307 2 2 2 2 2 2 54697 11442 2112 11325 17806 23256;23257 23257 2 LFFGPQHRPVILR Unmodified 1578.9147 0.91470123 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 9 0 1 50.141 50.141 4 1.7476E-11 11824 TMT1-8 130.01 98.634 153.46 187.43 198.79 198.32 215.7 276.33 145 189 203 196 224 265 1 1 1 1 1 1 65606 11443 2112 11326 17807 23258 23258 1 LFFLQVK Unmodified 893.53747 0.53747492 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-3 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 0 9 0 1 73.906 73.906 2 0.0075589 21144 TMT1-8 136.58 29.738 3096 5751.6 3892.7 3400.3 4694 4755.8 2934 5663 4071 3404 4793 4587 3 3 3 3 3 3 575290 11444 894;720;1015 11327 17808 23259;23260;23261 23259 3 LFFQPHQAGLSK Unmodified 1371.7299 0.72992016 2605 Q9GZZ9-2;Q9GZZ9 UBA5 Ubiquitin-like modifier-activating enzyme 5 yes no 0 0 0 0 0 9 0 1 53.547 53.547 3 0.012842 13190 TMT1-8 51.726 13.369 153.51 225.35 157.42 177.35 183.24 275.13 145 224 166 174 192 263 1 1 1 1 1 1 13155 11445 2605 11328 17809 23262 23262 1 LFGGFNSSDTVTSPQR Unmodified 1711.8166 0.81656291 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 8 0 1 59.276 59.276 3 0.00052101 17292 TMT1-7 70.654 63.452 146.63 166.09 102.32 110.24 148.77 150.32 138 167 109 109 152 145 1 1 1 1 1 1 17408 11446 673 11329 17810 23263 23263 1 LFGGLLR Unmodified 774.47521 0.47520902 297 O75718 CRTAP Cartilage-associated protein yes yes 0 0 0 0 0 9 0 1 65.088 65.088 2 0.032959 17717 TMT1-8 87.839 42.894 37.791 81.373 71.68 50.121 71.746 67.243 36 80 73 51 73 65 1 1 1 1 1 1 4645.6 11447 297 11330 17811 23264 23264 1 LFGGNFAHQASVAR Unmodified 1473.7477 0.74769548 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 9 0 1 46.975 46.975 3 2.0115E-14 10546 TMT1-8 143.46 99.033 191.86 223.01 206.51 142.92 173.36 304.19 181 225 210 145 182 290 2 2 2 2 2 2 52504 11448 105 11331 17812 23265;23266 23265 2 LFGHLNK Unmodified 827.46537 0.46537261 2212 Q8NDA8-3;Q8NDA8 MROH1 Maestro heat-like repeat-containing protein family member 1 yes no 0 0 0 0 0 9 0 1 45.126 45.126 3 0.03749 9888 TMT1-8 51.688 22.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11449 2212 11332 17813 23267 23267 1 LFGIESSSGTILWK Unmodified 1536.8188 0.81879474 2191 Q8N766-4;Q8N766-3;Q8N766-2;Q8N766 EMC1 ER membrane protein complex subunit 1 yes no 0 0 0 0 0 9 0 1 77.702 77.702 3 6.2212E-05 22658 TMT1-8 80.96 48.226 30.674 59.239 24.206 77.74 32.249 53.446 29 58 29 73 36 51 1 1 1 1 1 1 5365.3 11450 2191 11333 17814 23268 23268 1 LFGLLVK Unmodified 788.51601 0.5160112 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 9 0 1 73.941 73.941 2 0.011995 21241 TMT1-8 114.67 11.258 129.81 251.52 151.95 121.89 185.83 182.31 123 247 160 123 189 176 1 1 1 1 1 1 16689 11451 1129 11334 17815 23269 23269 1 LFGYEPTIYYPK Unmodified 1489.7493 0.74931819 2209 Q8NCW5-2;Q8NCW5 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 0 8 0 1 72.468 72.468 3 0.00062147 22412 TMT1-7 82.171 62.332 115.53 113.22 144.7 108 133.66 166.75 109 116 145 109 138 160 2 2 2 2 2 2 22875 11452 2209 11335 17816 23270;23271 23270 2 LFHTAPNVPHYAK Unmodified 1493.7779 0.77793298 1284 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 0 9 0 1 43.761 43.761 4 0.02681 9419 TMT1-8 40.516 32.971 108.07 130.08 120.59 93.141 128.37 127.45 102 131 123 94 131 123 1 1 1 1 1 1 16973 11453 1284 11336 17817 23272 23272 1 LFIGGLNTETNEK Unmodified 1434.7355 0.73545904 1056 P38159;P38159-2;Q96E39;P38159-3 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 0 7 0 1 62.802 62.802 3 4.8529E-05 18645 TMT1-6 99.011 68.952 268.51 329.55 398.44 272.9 267.12 476.34 254 333 399 276 283 454 2 2 2 2 2 2 40707 11454 1056 11337 17818 23273;23274 23274 2 LFIGGLPNYLNDDQVK Unmodified 1804.9359 0.93594977 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 8 0 1 77.687 77.687 3 1.687E-05 24547 TMT1-7 86.498 66.391 131.35 181.51 132.94 108.28 156.17 181.03 124 181 138 109 160 174 2 2 2 2 2 2 30821 11455 896 11338 17819 23275;23276 23276 2 LFIGGLSFETTDDSLR Unmodified 1769.8836 0.88357984 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 0 7 0 1 79.308 79.308 3 2.8494E-11 25087 TMT1-6 116.96 76.724 122.73 158.25 158.63 98.357 195.38 148.99 116 159 160 102 196 145 2 2 2 2 2 2 29928 11456 1259 11339 17820 23277;23278 23278 2 LFIGGLSFETTDDSLREHFEK Unmodified 2440.1911 0.19105483 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 7 0 1 70.602 70.602 4 9.6087E-06 21635 TMT1-6 73.809 59.039 269.91 263.3 218.58 173.2 210.47 279.68 254 268 225 174 218 268 2 2 2 2 2 2 56703 11457 1259 11340 17821 23279;23280 23280 2 LFIGGLSFETTDESLR Unmodified 1783.8992 0.89922991 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 6.5 0.5 1 1 78.369 78.369 3 4.2242E-29 24731 TMT1-6 188.13 163.72 231.16 314.15 196.99 229.26 261.76 264.36 218 313 210 225 269 255 4 4 4 4 4 4 118630 11458 601 11341 17822;17823 23281;23282;23283;23284 23283 4 LFIGGLSFETTEESLR Unmodified 1797.9149 0.91487997 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 5.67 2.13 1 2 3 78.378 78.378 2;3 6.3748E-24 24675 TMT1-6 176 169.97 295.37 465.96 276.69 385.77 346.52 480.47 279 461 298 374 364 460 6 6 5 6 6 6 315120 11459 848 11342 17824;17825;17826;17827;17828;17829 23285;23286;23287;23288;23289;23290;23291 23290 7 LFIGMVSK Unmodified 893.50446 0.50446024 348 O95319-5;O95319-2;O95319;O95319-4;O95319-3 CELF2 CUGBP Elav-like family member 2 yes no 0 0 0 0 0 9 0 1 66.933 66.933 2 0.0069342 18455 TMT1-8 101.64 44.084 61.166 102.86 92.36 64.381 61.652 98.445 58 102 94 65 65 94 1 1 1 1 1 1 4530.7 11460 348 11343 17830 23292 23292 1 LFIIQACR Unmodified 1019.5586 0.55862107 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 0 9 0 1 60.986 60.986 2 0.0092511 16113 TMT1-8 83.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11461 1099 11344 17831 23293 23293 1 LFIVDAR Unmodified 832.48069 0.48068833 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 8 0 1 58.874 58.874 2 0.024113 17046 TMT1-7 94.407 33.619 84.974 69.429 86.683 64.128 93.09 66.634 80 72 87 65 94 65 1 1 1 1 1 1 33724 11462 2934 11345 17832 23294 23294 1 LFIYNPTTGEFLGR Unmodified 1626.8406 0.84059282 1300 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 0 9 0 1 75.568 75.568 2 1.6161E-11 21850 TMT1-8 123.01 81.978 15.781 29.326 27.847 37.987 42.213 29.709 15 29 29 37 43 29 1 1 1 1 1 1 8068.8 11463 1300 11346 17833 23295 23295 1 LFKPGQEAVK Unmodified 1115.6339 0.63389451 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 1 8.5 0.5 1 1 46.714 46.714 3 0.0041 10448 TMT1-8 70.488 26.041 558.26 721.78 780.09 471.23 658.52 662.38 528 726 783 485 672 639 3 3 3 3 3 3 43896 11464 2205 11347 17834;17835 23296;23297;23298 23297 3 LFKPPQPPAR Unmodified 1149.6659 0.66586334 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 1 9 0 1 45.257 45.257 3 0.0029486 10020 TMT1-8 72.928 30.819 61.185 118.02 76.292 64.62 99.831 113.35 58 116 80 65 102 109 1 1 1 1 1 1 15999 11465 145 11348 17836 23299 23299 1 LFLAEFQSIPR Unmodified 1319.7238 0.72377215 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 9 0 1 74.56 74.56 2 1.8659E-10 21429 TMT1-8 153.97 90.405 268.89 466.61 217.71 307.63 387.69 421.73 254 459 241 300 398 406 2 2 2 2 2 2 77376 11466 570 11349 17837 23300;23301 23300 2 LFLAGYELTPTMR Unmodified 1510.7854 0.78538612 1937 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 0 0 0 0 0 9 0 1 74.756 74.756 2 0.00052513 21537 TMT1-8 92.611 56.667 38.035 58.307 50.237 28.176 28.005 30.115 36 58 51 29 29 29 1 1 1 1 1 1 5629.9 11467 1937 11350 17838 23302 23302 1 LFLASLAAAGSGTDAQVALVNEVK Unmodified 2344.2638 0.26382585 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 2 84.431 84.431 3;4 0.00013407 25278 TMT1-8 49.125 18.582 77.244 117.9 82.369 96.564 67.485 129.19 73 117 87 94 73 123 2 2 2 2 2 2 9353.3 11468 2100 11351 17839;17840 23303;23304 23303 2 LFLDLACR Unmodified 1006.527 0.52698659 1873 Q15771 RAB30 Ras-related protein Rab-30 yes yes 0 0 0 0 0 8 0 1 67.789 67.789 2 0.0024924 20613 TMT1-7 81.191 36.469 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11469 1873 11352 17841 23305 23305 1 LFLEPTR Unmodified 874.49125 0.49125301 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 7 0 1 54.641 54.641 2 0.005325 15357 TMT1-6 81.32 61.038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11470 401 11353 17842 23306 23306 1 LFLFHTSLPIAEAPGK Unmodified 1739.961 0.9610423 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 9 0 1 71.004 71.004 3 1.9409E-06 20060 TMT1-8 90.853 63.549 46.45 57.249 79.619 73.454 84.526 90.33 44 58 80 73 87 87 1 1 1 1 1 1 7966.5 11471 1293 11354 17843 23307 23307 1 LFLHYGR Unmodified 904.49192 0.49192172 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 9 0 1 45.966 45.966 3 0.00072549 10199 TMT1-8 154.29 84.86 115.61 113.46 129.45 85.822 82.638 128.76 109 116 130 87 87 123 1 1 1 1 1 1 18640 11472 1786 11355 17844 23308 23308 1 LFLIDFGLAK Unmodified 1135.6641 0.664132 1163 P48729-3;P48729;Q8N752 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 0 0 0 0 0 9 0 1 86.653 86.653 2 0.00041808 26166 TMT1-8 114.84 51.355 15.81 21.851 29.365 13.968 35.988 29.887 15 22 29 15 36 29 1 1 1 1 1 1 2417.2 11473 1163 11356 17845 23309 23309 1 LFLLPHK Unmodified 866.53781 0.53780928 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 9 0 1 58.481 58.481 3 0.014629 15165 TMT1-8 64.866 29.766 37.819 65.262 80.598 41.666 86.244 82.819 36 65 80 44 87 80 1 1 1 1 1 1 8141.1 11474 1627 11357 17846 23310 23310 1 LFLLTVHK Unmodified 969.60114 0.60113781 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 9 0 1 62.009 62.009 3 0.0010443 16491 TMT1-8 101.99 73.262 85.013 61.983 86.416 80.15 113.78 112.95 80 65 87 80 116 109 1 1 1 1 1 1 11442 11475 1601 11358 17847 23311 23311 1 LFLNETQTQEITEDIPVK Unmodified 2117.0892 0.089215523 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 5 0 1 74.763 74.763 4 0.0077296 23693 TMT1-4 47.09 37.433 61.745 56.981 33.955 28.448 65.136 45.045 58 58 36 29 65 44 1 1 1 1 1 1 5619.6 11476 1085 11359 17848 23312 23312 1 LFLPLYVYSLENQDK Unmodified 1840.9611 0.96110188 1918 Q2KHT3-2;Q2KHT3 CLEC16A Protein CLEC16A yes no 0 0 0 0 0 9 0 1 87.921 87.921 3 0.0026254 26637 TMT1-8 55.841 28.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11477 1918 11360 17849 23313 23313 1 LFLVDDLVDSLK Unmodified 1375.7599 0.75988288 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 7 0 1 92.745 92.745 3 0.011827 30040 TMT1-6 57.019 33.643 15.985 14.783 5.9036 15.777 14.174 23.048 15 15 7 15 15 22 1 1 1 1 1 1 1255.3 11478 2708;2709 11361 17850 23314 23314 1 LFLVQLQEK Unmodified 1116.6543 0.6542956 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 9 0 1 70.15 70.15 2 6.6181E-05 19710 TMT1-8 155.07 91.588 68.579 133.37 82.951 63.652 130.24 112.48 65 131 87 65 131 109 1 1 1 1 1 1 13275 11479 204 11362 17851 23315 23315 1 LFMILWLK Unmodified 1062.63 0.6299951 3048;2439 Q9Y696;O15247;Q9NZA1-3;Q9NZA1-2;Q9NZA1;Q96NY7-2;Q96NY7 CLIC4;CLIC2;CLIC5;CLIC6 Chloride intracellular channel protein 4;Chloride intracellular channel protein 2;Chloride intracellular channel protein 5;Chloride intracellular channel protein 6 no no 0 0 0 0 0 9 0 1 94.43 94.43 2 0.012209 29100 TMT1-8 86.086 45.655 30.479 58.696 57.496 35.564 19.017 68.747 29 58 58 36 22 65 1 1 1 1 1 1 1716.7 11480 3048;2439 11363 17852 23316 23316 1 LFMVLWLK Oxidation (M) 1064.6093 0.60925966 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 1 0 0 9 0 1 83.356 83.356 2 0.0063026 24838 TMT1-8 99.919 31.537 61.578 64.072 55.985 58.73 70.544 90.729 58 65 58 58 73 87 1 1 1 1 1 1 15993 11481 59 11364 17853 23317 23317 12 1 LFMVLWLK Unmodified 1048.6143 0.61434504 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 9 0 1 91.187 91.187 2 8.9928E-06 27894 TMT1-8 168.43 75.507 165.7 164.08 145.4 115.24 153.08 231.22 156 167 149 116 159 221 2 2 2 2 2 2 23189 11482 59 11364 17854 23318;23319 23318 2 LFNAIIHR Unmodified 982.57123 0.57123467 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 52.381 52.381 3 0.0011153 12731 TMT1-8 109.86 77.542 99.691 153.9 66.339 65.352 92.484 82.641 94 152 73 65 94 80 1 1 1 1 1 1 15308 11483 1833 11365 17855 23320 23320 1 LFNDSSPVVLEESWDALNAITK Unmodified 2447.222 0.22202061 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 6 0 1 94.33 94.33 3 0.00014855 31139 TMT1-5 59.324 56.562 23.462 21.728 5.8456 6.8801 22.462 6.821 22 22 7 7 22 7 1 1 1 1 1 1 1723.6 11484 2308 11366 17856 23321 23321 1 LFNHLSAVSESIQALGWVAMAPK Unmodified 2468.2886 0.28860081 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 9 0 3 86.241 86.241 3;4;5 4.7877E-26 25967 TMT1-8 120.15 101.62 107.5 206.19 152.62 170.3 166.88 212.7 102 203 160 167 174 204 3 3 3 3 3 3 49098 11485 1555;1556 11367 17857;17858;17859 23322;23323;23324 23323 3 LFNLSKEDDVR Unmodified 1334.683 0.68302954 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 1 7 0 1 53.057 53.057 3 0.015408 14688 TMT1-6 63.401 40.082 153.08 325.6 145.54 163.34 152.32 219.51 145 318 160 160 160 210 1 1 1 1 1 1 21621 11486 1442 11368 17860 23325 23325 1 LFPDFFTR Unmodified 1041.5284 0.5283668 872 P24158 PRTN3 Myeloblastin yes yes 0 0 0 0 0 9 0 1 76.081 76.081 2 0.0013092 22072 TMT1-8 147.04 88.844 307.25 601.53 329.62 232.49 483.51 412.6 291 590 349 239 486 400 1 1 1 1 1 1 87216 11487 872 11369 17861 23326 23326 1 LFPDTPLALDANK Unmodified 1413.7504 0.75038083 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 6.5 0.5 1 1 72.074 72.074 3 5.4656E-06 22275 TMT1-6 108.72 83.539 138.85 173.43 140.21 149.32 100.88 182.61 131 174 146 146 109 174 2 2 2 2 2 2 28304 11488 1655 11370 17862;17863 23327;23328;23329 23329 3 LFPDTPLALDANKK Unmodified 1541.8453 0.84534384 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 1 8 0 2 63.954 63.954 3;4 1.9278E-17 19120 TMT1-7 152.99 117.35 230.05 289.31 223.48 226.81 307.88 325.94 217 290 233 225 315 314 2 2 2 2 2 2 24735 11489 1655 11371 17864;17865 23330;23331 23331 2 LFPLIQAMHPTLAGK Unmodified 1635.9171 0.917069 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 0 9 0 1 71.92 71.92 3 0.00030888 20471 TMT1-8 65.472 45.633 54.156 73.469 33.001 28.51 64.877 52.515 51 73 36 29 65 51 1 1 1 1 1 1 6043.4 11490 662;2634 11372 17866 23332 23332 1 LFPLYVLALLK Unmodified 1288.8159 0.81588162 358 O95487-2;O95487;O95487-3 SEC24B Protein transport protein Sec24B yes no 0 0 0 0 0 9 0 1 101.87 101.87 2 2.2818E-06 31763 TMT1-8 123.69 90.849 0 15.96 0 23.791 13.549 30.527 0 15 0 22 15 29 0 1 0 1 1 1 991.61 11491 358 11373 17867 23333 23333 1 LFPNADSK Unmodified 890.44978 0.44978213 930 P28482 MAPK1 Mitogen-activated protein kinase 1 yes yes 0 0 0 0 0 7 0 1 50.619 50.619 2 0.02794 13761 TMT1-6 83.265 31.577 467 457.49 473.17 367.78 389.85 461.11 440 467 480 369 404 443 1 1 1 1 1 1 43084 11492 930 11374 17868 23334 23334 1 LFPNSLDQTDMHGDSEYNIMFGPDICGPGTK Unmodified 3455.5108 0.51082712 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 6 0 1 77.24 77.24 4 3.1503E-09 24869 TMT1-5 74.321 64.263 38.117 50.979 42.74 36.291 27.083 46.131 36 51 44 36 29 44 1 1 1 1 1 1 10707 11493 918 11375 17869 23335 23335 1 LFPQETLFLEAKE Unmodified 1563.8185 0.81846039 2931 Q9UNN5-2;Q9UNN5 FAF1 FAS-associated factor 1 yes no 0 0 0 0 1 6 0 1 77.3 77.3 3 0.0021463 24879 TMT1-5 73.927 57.808 37.948 58.065 65.117 34.528 49.942 52.941 36 58 65 36 51 51 1 1 1 1 1 1 5161.9 11494 2931 11376 17870 23336 23336 1 LFQCLLHR Unmodified 1085.5804 0.58041915 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 2 55.901 55.901 2;3 0.00019566 14075 TMT1-8 147.16 116.08 176.59 308.62 175.48 215.87 170.32 325.6 167 304 189 210 183 310 2 2 2 2 2 2 27997 11495 676 11377 17871;17872 23337;23338;23339 23337 3 LFQECCPHSTDR Unmodified 1548.6449 0.64494625 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 5.5 0.5 1 1 37.433 37.433 3 1.1573E-08 8997 TMT1-4 129.37 124.4 114.96 189.34 175.74 183.22 220.27 194.12 109 188 181 181 225 188 2 2 2 2 2 2 18514 11496 1409;1410 11378 17873;17874 23340;23341 23340 2 LFQEDDEIPLYLK Unmodified 1621.8239 0.8239397 703 P14406 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes yes 0 0 0 0 0 5.25 0.433 3 1 78 78 2;3;4 2.8584E-10 24961 TMT1-4 134.98 99.563 439.23 549.34 373.74 341.86 456.1 546.64 414 550 392 341 469 525 4 4 4 4 4 4 173650 11497 703 11379 17875;17876;17877;17878 23342;23343;23344;23345 23342 4 LFQENSVLSSLPLNSLSR Unmodified 2003.0688 0.068754852 299 O75787-2;O75787 ATP6AP2 Renin receptor yes no 0 0 0 0 0 9 0 1 79.536 79.536 3 0.00012003 23396 TMT1-8 59.585 37.047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11498 299 11380 17879 23346 23346 1 LFQLMVEHTPDEESIDWTK Unmodified 2317.0936 0.093648974 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 6 0 2 75.838 75.838 3;4 4.2036E-07 24325 TMT1-5 88.486 80.298 131.47 166.75 124.06 157.54 122.18 221.44 124 167 131 153 131 211 2 2 2 2 2 2 19903 11499 1656 11381 17880;17881 23347;23348 23347 2 LFQPWSSLLR Unmodified 1245.687 0.68699271 849 P22681 CBL E3 ubiquitin-protein ligase CBL yes yes 0 0 0 0 0 9 0 1 78.447 78.447 2 0.00018845 22905 TMT1-8 128.86 90.082 46.722 58.006 33.218 45.31 42.667 37.158 44 58 36 44 44 36 1 1 1 1 1 1 5446.7 11500 849 11382 17882 23349 23349 1 LFQQIYSDGSDEVKR Unmodified 1783.8741 0.87407779 2979 Q9Y2Z0-2;Q9Y2Z0 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 1 6 0 1 57.277 57.277 3 0.0077509 17014 TMT1-5 57.499 45.476 122.82 182.24 123.25 155.76 161.06 188.35 116 181 131 152 167 181 1 1 1 1 1 1 9711.9 11501 2979 11383 17883 23350 23350 1 LFQSNDPTLR Unmodified 1189.6091 0.60913632 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 6 0 1 51.526 51.526 2 0.0015786 14752 TMT1-5 72.365 33.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11502 3047 11384 17884 23351 23351 1 LFQVEYAIEAIK Unmodified 1422.7759 0.7758673 924 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 0 0 0 7 0 2 81.957 81.957 2;3 1.407E-13 26014 TMT1-6 174.77 106.03 335.89 429.01 350.36 311.8 326.72 455.45 317 430 362 310 341 436 3 3 3 3 3 3 128680 11503 924 11385 17885;17886 23352;23353;23354 23352 3 LFSADPFDLEAQAK Unmodified 1550.7617 0.76167379 1981 Q5TDH0-2;Q5TDH0;Q5TDH0-3 DDI2 Protein DDI1 homolog 2 yes no 0 0 0 0 0 6 0 1 77.652 77.652 3 1.7712E-07 25038 TMT1-5 109.15 79.842 46.502 73.585 56.9 27.094 64.429 67.451 44 73 58 29 65 65 1 1 1 1 1 1 7453.7 11504 1981 11386 17887 23355 23355 1 LFSFTPAWNWTCK Unmodified 1656.7759 0.77588407 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 9 0 1 83.458 83.458 3 2.2958E-09 24914 TMT1-8 111.39 85.67 61.4 72.21 79.053 64.322 106.92 120.61 58 73 80 65 109 116 1 1 1 1 1 1 11415 11505 2914 11387 17888 23356 23356 1 LFSFYDYASK Unmodified 1239.5812 0.58119023 1811 Q15018 FAM175B BRISC complex subunit Abro1 yes yes 0 0 0 0 0 9 0 1 72.251 72.251 3 0.0020757 20541 TMT1-8 74.162 42.154 46.072 126.35 84.456 41.859 63.75 67.471 44 123 87 44 65 65 1 1 1 1 1 1 6252.6 11506 1811 11388 17889 23357 23357 1 LFSGDVVLTAR Unmodified 1176.6503 0.65027285 735 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 0 0 0 0 7 0 1 63.322 63.322 2 0.0025125 18800 TMT1-6 92.428 35.25 169.33 213.78 213.05 181.07 216.22 253.93 160 215 217 181 223 244 1 1 1 1 1 1 27990 11507 735 11389 17890 23358 23358 1 LFSLELVDESGEIR Unmodified 1605.825 0.82500233 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 0 5 0 2 77.272 77.272 2;3 1.1149E-10 24682 TMT1-4 125.61 94.181 46.468 73.49 62.74 66.148 61.57 98.447 44 73 65 65 65 94 2 2 2 2 2 2 14485 11508 913 11390 17891;17892 23359;23360 23359 2 LFSLTLK Unmodified 820.50584 0.50584045 2050 Q6VY07;Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 yes no 0 0 0 0 0 9 0 1 69.568 69.568 2 0.016192 19490 TMT1-8 97.033 16.739 68.711 125.1 67.829 74.172 83.686 113.81 65 123 73 73 87 109 1 1 1 1 1 1 9597.4 11509 2050 11391 17893 23361 23361 1 LFSNTIENIK Unmodified 1177.6343 0.63428844 2133 Q89863 yes yes 0 0 0 0 0 8 0 2 68.82 68.82 2;3 0.0021108 21077 TMT1-7 83 37.863 182.94 448.4 253.02 83.6 274.1 99.844 174 437 263 95 269 101 2 2 2 2 2 2 60586 11510 2133 11392 17894;17895 23362;23363 23363 2 LFTAESLIGLK Unmodified 1190.6911 0.69107503 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 0 9 0 1 77.131 77.131 2 4.1998E-08 22436 TMT1-8 140.17 108.8 272.28 498.34 342.69 300.67 361.74 394.76 258 491 358 300 372 380 2 2 2 2 2 2 32213 11511 1154 11393 17896 23364;23365 23364 2 LFTALFPFEK Unmodified 1211.659 0.65904662 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 9 0 2 85.832 85.832 2;3 0.00032874 25883 TMT1-8 123.63 74.829 62.291 101.85 84.442 73.339 75.333 144.96 59 101 87 73 80 138 2 2 2 2 2 2 34690 11512 647 11394 17897;17898 23366;23367 23367 2 LFTFQFNNLGNTDINYIK Unmodified 2161.0844 0.084404917 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 9 0 1 83.352 83.352 3 2.158E-07 24898 TMT1-8 73.928 49.37 23.337 28.938 20.622 29.815 34.71 45.914 22 29 22 29 36 44 1 1 1 1 1 1 4631.6 11513 3012 11395 17899 23368 23368 1 LFTNFSGADLLK Unmodified 1324.7027 0.70270235 1645 Q12800-2;Q12800-3;Q12800-4;Q12800 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 0 0 9 0 2 75.758 75.758 2;3 0.00077112 21885 TMT1-8 72.496 39.55 30.493 66.289 48.771 51.192 87.418 35.881 29 65 51 51 87 36 1 1 1 1 1 1 7744.9 11514 1645 11396 17900;17901 23369;23370 23369 2 LFTPDVIR Unmodified 959.54402 0.54401687 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 60.292 60.292 2 3.978E-08 17543 TMT1-6 176.41 69.996 401.3 490.43 486.35 350.82 494.79 534.87 379 494 493 356 506 515 2 2 2 2 2 2 81581 11515 859 11397 17902;17903 23371;23372 23371 2 LFTTMELMR Unmodified 1140.5671 0.56713685 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 0 9 0 1 69.397 69.397 2 0.033475 19442 TMT1-8 67.993 37.422 100.15 77.454 54.624 66.898 47.391 83.928 94 80 58 65 51 80 1 1 1 1 1 1 5941 11516 55 11398 17904 23373 23373 1 LFTTVRPLIEVQLSEEQIR Unmodified 2270.2634 0.26343191 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 1 8 0 1 72.644 72.644 3 1.3753E-09 22524 TMT1-7 98.196 74.513 77.518 78.73 69.543 97.171 75.849 98.04 73 80 73 94 80 94 1 1 1 1 1 1 9071 11517 2306 11399 17905 23374 23374 1 LFVALQGCMDK Unmodified 1280.6257 0.62571436 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 68.761 68.761 2 2.8553E-15 19189 TMT1-8 150.61 108.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11518 1194 11400 17906 23375 23375 1 LFVGGIKEDTEEHHLR Unmodified 1878.9588 0.95881047 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 1 6 0 4 44.918 44.918 4;5 5E-45 12299 TMT1-5 215.37 0 1371.7 2076.6 1425.3 1460.5 1861.6 2167.4 1296 2061 1499 1446 1915 2083 4 4 4 4 4 4 284840 11519 848 11401 17907;17908;17909;17910 23376;23377;23378;23379 23379 4 LFVGGLDWSTTQETLR Unmodified 1821.9261 0.92611336 2397 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 0 8 0 2 76.232 76.232 2;3 4.0616E-17 23900 TMT1-7 142.1 115.39 76.01 132.64 96.977 88.97 76.226 98.029 72 131 101 88 80 94 2 2 2 2 2 2 54303 11520 2397 11402 17911;17912 23380;23381 23380 2 LFVGGLK Unmodified 732.45341 0.45341094 1675 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 0 9 0 3 59.131 59.131 2 0.009653 15307 TMT1-8 123.34 0 932.58 1794.6 1160.8 1342.8 1519.2 1694.2 884 1764 1232 1318 1567 1630 6 6 6 6 6 6 189910 11521 1675 11403 17913;17914;17915 23382;23383;23384;23385;23386;23387 23384 6 LFVGGLSFDTNEQSLEQVFSK Unmodified 2344.1587 0.15869207 1745 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 0 8 0 2 88.018 88.018 3;4 1.7582E-31 28348 TMT1-7 149.74 126.41 69.499 117.76 121.84 110.16 91.177 91.206 66 117 124 109 95 88 3 3 3 3 3 3 28573 11522 1745 11404 17916;17917 23388;23389;23390 23389 3 LFVGNLPADITEDEFKR Unmodified 1963.0051 0.005091963 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 1 6 0 1 70.34 70.34 3 5.039E-08 22133 TMT1-5 103.04 94.222 122.61 216.19 129.82 132.55 153.88 215.2 116 213 138 131 160 206 1 1 1 1 1 1 58463 11523 857 11405 17918 23391 23391 1 LFVGNLPPDITEEEMR Unmodified 1858.9135 0.91349976 1837 Q15233 NONO Non-POU domain-containing octamer-binding protein yes yes 0 0 0 0 0 5 0 1 72.205 72.205 3 0.0018434 22896 TMT1-4 62.646 51.701 154.08 126.57 145.14 75.937 151.66 111.87 145 131 145 80 152 109 3 3 3 3 3 3 6097.2 11524 1837 11406 17919 23392;23393;23394 23393 3 LFVGNLPTDITEEDFKR Unmodified 1993.0157 0.015656649 2283 Q8WXF1-2;Q8WXF1 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 1 6 0 1 69.986 69.986 4 0.031989 22020 TMT1-5 38.093 13.299 54.04 88.255 40.051 44.652 55.999 76.22 51 87 44 44 58 73 1 1 1 1 1 1 4551 11525 2283 11407 17920 23395 23395 1 LFVGSIPK Unmodified 859.51674 0.51673948 226;227;170 O43390;O43390-3;O43390-2;O43390-4;O60506-2;O60506;O60506-3;O60506-4;O60506-5 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 9 0 1 61.219 61.219 2 0.0069085 16274 TMT1-8 122.13 47.713 445.14 755.91 467.7 625.45 596.42 771.82 421 746 502 608 623 740 2 2 2 2 2 2 76473 11526 170;226;227 11408 17921 23396;23397 23397 2 LFVLFGAEILK Unmodified 1248.7482 0.74819598 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 9 0 1 91.058 91.058 2 5.9791E-23 27900 TMT1-8 197.1 130.06 188.71 262.29 161.11 234.96 246.79 236.01 178 261 174 228 254 228 2 2 2 2 2 2 53318 11527 1053 11409 17922 23398;23399 23399 2 LFVLFGAEILKK Unmodified 1376.8432 0.843159 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 9 0 1 81.499 81.499 3 5.0711E-07 24156 TMT1-8 120.32 77.573 61.146 125.47 76.507 49.761 75.611 168.4 58 123 80 51 80 160 1 1 1 1 1 1 6404.8 11528 1053 11410 17923 23400 23400 1 LFVLLQTSK Unmodified 1047.6328 0.63283187 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 9 0 1 73.246 73.246 2 0.00043888 20948 TMT1-8 133.57 95.336 92.41 77.339 92.688 87.852 91.193 90.14 87 80 94 87 94 87 1 1 1 1 1 1 6723.4 11529 2430 11411 17924 23401 23401 1 LFVSGACDASAK Unmodified 1224.5809 0.58087266 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 0 7.5 0.5 2 2 52.628 52.628 2;3 1.0826E-43 14516 TMT1-6 221.5 173.56 499.27 735.42 584.26 605.07 671.55 773.94 472 732 608 597 694 744 5 5 5 5 5 5 194180 11530 1453 11412 17925;17926;17927;17928 23402;23403;23404;23405;23406 23402 5 LFVTGLFSLNQDIPAFK Unmodified 1909.0349 0.034935528 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 2 92.352 92.352 3;4 2.4133E-07 28245 TMT1-8 78.69 56.215 55.008 72.78 70.731 81.065 114.8 82.004 52 73 73 80 116 80 3 3 3 3 3 3 10452 11531 121 11413 17929;17930 23407;23408;23409 23407 3 LFVTNDAATILR Unmodified 1332.7402 0.74015049 1232 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 8.33 0.471 2 1 67.035 67.035 2;3 8.8888E-08 20390 TMT1-7 128.88 79.344 231.82 228.57 158.28 168.97 219.57 233.58 218 232 167 167 225 225 3 3 3 3 3 3 103630 11532 1232 11414 17931;17932;17933 23410;23411;23412 23411 3 LFYADHPFIFLVR Unmodified 1636.8766 0.87658439 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 9 0 1 75.838 75.838 3 4.7511E-06 21939 TMT1-8 97.439 74.56 46.488 57.356 73.067 50.36 54.674 107.17 44 58 73 51 58 102 1 1 1 1 1 1 14003 11533 1223 11415 17934 23413 23413 1 LFYLALPPTVYEAVTK Unmodified 1824.0073 0.0073237944 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 9 0 2 89.238 89.238 3;4 8.9218E-17 27197 TMT1-8 125.28 97.31 339.03 473.9 325.93 313.55 427.46 413.14 320 472 342 312 436 399 4 4 4 4 4 4 115610 11534 655 11416 17935;17936 23414;23415;23416;23417 23416 4 LFYNSSVEQIWITVLQCR Unmodified 2255.1409 0.14087394 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 0 9 0 1 94.43 94.43 3 8.944E-11 29133 TMT1-8 101.67 69.045 0 15.716 14.608 15.253 14.454 15.578 0 15 15 15 15 15 0 1 1 1 1 1 3530.7 11535 2194 11417 17937 23418 23418 1 LFYSTFATDDRK Unmodified 1462.7092 0.70924429 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 56.649 56.649 3 1.9399E-05 16255 TMT1-7 108.68 88.923 349.37 611.31 274.66 282.35 272.8 450.6 330 601 301 278 288 430 1 1 1 1 1 1 29554 11536 952 11418 17938 23419 23419 1 LGAAPEEESAYVAGEK Unmodified 1619.7679 0.76788138 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 2.5 0.5 1 1 52.818 52.818 3 0.0020062 16367 TMT1-2 62.055 33.423 115.14 206.05 130.48 132.37 161.33 211.79 109 203 138 131 167 203 1 1 1 1 1 1 16506 11537 2934 11419 17939;17940 23420;23421 23421 2 LGAASLGAEDPETQVVLINAVK Unmodified 2194.1845 0.18451289 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5 2.1 1 1 2 1 74.355 74.355 3;4 7.5156E-56 23750 TMT1-5 183.6 166.45 762.05 994.17 1103.6 833.48 886.71 1178.2 721 1000 1113 838 923 1129 5 5 5 5 5 5 954320 11538 3010 11420 17941;17942;17943;17944;17945 23422;23423;23424;23425;23426;23427 23426 6 LGACLAFLPEAFDFIAR Unmodified 1909.976 0.97604044 2125 Q86X76-5;Q86X76-2;Q86X76-4;Q86X76;Q86X76-3 NIT1 Nitrilase homolog 1 yes no 0 0 0 0 0 9 0 1 96.197 96.197 3 5.9742E-05 29704 TMT1-8 68.257 47.006 23.111 36.941 51.947 20.248 37.315 29.849 22 37 51 22 37 29 2 2 2 2 1 2 8813.2 11539 2125 11421 17946 23428;23429 23429 2 LGADAVGMSTVPEVIVAR Unmodified 1783.9502 0.95021962 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 6 0 1 68.689 68.689 3 4.7248E-14 21499 TMT1-5 117.18 101.4 53.968 95.611 45.811 75.481 83.883 106.34 51 94 51 73 87 102 1 1 1 1 1 1 47330 11540 394 11422 17947 23430 23430 1 LGAGPDGVEEIKR Unmodified 1339.7096 0.70957864 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 1 5 0 1 45.701 45.701 3 2.1335E-11 12315 TMT1-4 145.83 114.31 200.42 205.08 225.98 190.52 253.63 309.36 189 209 229 191 261 297 1 1 1 1 1 1 24377 11541 1256 11423 17948 23431 23431 1 LGAGYPMGPFELLDYVGLDTTK Unmodified 2356.1661 0.16608564 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 97 97 3 6.757E-09 31590 TMT1-7 80.236 56.907 46.429 60.428 80.455 50.398 87.329 69.996 44 61 80 52 88 68 3 3 3 3 3 3 11675 11542 1909 11424 17949;17950 23432;23433;23434 23433 3 LGAILTPNDGR Unmodified 1125.6142 0.6142217 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 1 55.481 55.481 2 2.1066E-06 15684 TMT1-6 134.23 83.349 207.17 335.22 242.79 219.88 266.57 319.66 196 332 253 219 275 307 1 1 1 1 1 1 57594 11543 485 11425 17951 23435 23435 1 LGALFQPDSFVHGNSGAGNNWAK Unmodified 2386.1454 0.14544204 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 8.8 0.4 1 4 69.091 69.091 3;4;5 1.4844E-64 18982 TMT1-8 181.26 151.1 617.93 538.96 464.71 406.64 500.84 771.35 581 553 479 406 522 737 6 6 6 6 6 6 258890 11544 2650 11426 17952;17953;17954;17955;17956 23436;23437;23438;23439;23440;23441 23439 6 LGANSLLDLVVFGR Unmodified 1472.8351 0.83511351 970 P31040;P31040-2;P31040-3 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 9 0 1 88.947 88.947 2 1.2558E-16 27006 TMT1-8 154.09 119.28 91.853 147.02 127.19 118.34 104.43 120.68 87 146 131 117 109 116 2 2 2 2 2 2 26693 11545 970 11427 17957 23442;23443 23442 2 LGAPQTHLGLK Unmodified 1133.6557 0.65569258 2376 Q96C19;Q9BUP0-2;Q9BUP0 EFHD2;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 0 0 0 0 0 8.5 0.5 1 1 46.194 46.194 3 1.5306E-06 12036 TMT1-7 126.66 77.24 1022.4 1628.9 1166 977.77 1269.4 1201.4 967 1614 1213 980 1296 1161 3 3 3 3 3 3 136300 11546 2376 11428 17958;17959 23444;23445;23446 23444 3 LGAQLADLHLDNKK Unmodified 1534.8467 0.84674083 2666 Q9HA64 FN3KRP Ketosamine-3-kinase yes yes 0 0 0 0 1 7.5 0.5 1 1 53.903 53.903 4 0.0013008 15022 TMT1-6 67.358 55.59 254.33 363.13 228.55 180.91 233.4 271.57 240 361 240 182 240 261 2 2 2 2 2 2 14030 11547 2666 11429 17960;17961 23447;23448 23447 2 LGATAEK Unmodified 688.37555 0.37555455 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.5 0.5 1 1 36.622 36.622 2 0.006827 8662 TMT1-4 130.77 59.699 4743.6 4208 4929.6 3486.8 4710.4 3674.4 4468 4333 4955 3540 4777 3573 3 3 3 3 3 3 488780 11548 776 11430 17962;17963 23449;23450;23451 23449 3 LGATDELWAPPSIASLLTAAVIDNIR Unmodified 2706.4592 0.45923119 2639 Q9H3P2 NELFA Negative elongation factor A yes yes 0 0 0 0 0 9 0 1 108.96 108.96 3 1.2912E-11 33818 TMT1-8 74.222 60.766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11549 2639 11431 17964 23452 23452 1 LGATSVTR Unmodified 803.45012 0.45011648 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 6 0 1 34.276 34.276 2 0.0049687 7911 TMT1-5 75.243 23.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11550 2279 11432 17965 23453 23453 1 LGAVDESLSEETQK Unmodified 1504.7257 0.72568222 2413 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 0 0 3.5 0.5 1 1 55.822 55.822 3 2.808E-22 17682 TMT1-2 151.78 117.1 46.408 95.987 53.807 66.365 78.329 67.055 44 94 58 65 80 65 1 1 1 1 1 1 8064 11551 2413 11433 17966;17967 23454;23455 23454 2 LGAVFNQVAFPLQYTPR Unmodified 1920.0258 0.025767826 1850 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 0 9 0 1 80.488 80.488 3 7.1491E-09 23760 TMT1-8 93.495 58.575 30.689 44.17 34.515 36.644 34.396 45.923 29 44 36 36 36 44 1 1 1 1 1 1 12008 11552 1850 11434 17968 23456 23456 1 LGAVYDVSHYNALLK Unmodified 1661.8777 0.8777066 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 64.772 64.772 3 1.7864E-34 19425 TMT1-7 161.21 135.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11553 1101 11435 17969 23457 23457 1 LGCDWVATIFSR Unmodified 1423.6918 0.69182009 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 9 0 1 80.152 80.152 2 1.6075E-07 23609 TMT1-8 131.42 97.621 99.558 145.97 95.417 103.37 128.96 96.524 94 145 101 102 131 94 2 2 2 2 2 2 18078 11554 2263 11436 17970 23458;23459 23458 2 LGCFDHAQR Unmodified 1102.4978 0.49781173 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 6 0 1 35.355 35.355 3 0.00073696 8343 TMT1-5 100.84 66.055 123.1 129.07 120.58 92.88 142.23 150.51 116 131 123 94 145 145 1 1 1 1 1 1 6788.6 11555 2594 11437 17971 23460 23460 1 LGCFNLTIK Unmodified 1064.5689 0.56885141 1717 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 0 9 0 1 66.08 66.08 2 0.010526 18098 TMT1-8 92.051 37.894 92.52 92.758 60.976 74.571 84.218 97.801 87 94 65 73 87 94 1 1 1 1 1 1 8863.8 11556 1717 11438 17972 23461 23461 1 LGCGPEGER Unmodified 973.42873 0.42872911 501;757 P05771-2;P05771;P17252 PRKCB;PRKCA Protein kinase C beta type;Protein kinase C alpha type no no 0 0 0 0 0 2.5 0.5 1 1 32.295 32.295 2 0.0065454 8161 TMT1-2 94.806 76.427 129.75 196.3 208.81 158.59 204.58 257.46 123 196 211 160 211 247 2 2 2 2 2 2 49114 11557 501;757 11439 17973;17974 23462;23463 23463 2 LGCLIWEVFNGPLPR Unmodified 1769.9287 0.92869632 2432 Q96KG9-5;Q96KG9-3;Q96KG9-4;Q96KG9-6;Q96KG9-2;Q96KG9 SCYL1 N-terminal kinase-like protein yes no 0 0 0 0 0 9 0 1 95.999 95.999 3 0.015804 29600 TMT1-8 44.457 23.397 15.985 14.783 5.9525 14.68 14.224 23.046 15 15 7 14 15 22 1 1 1 1 1 1 1820.5 11558 2432 11440 17975 23464 23464 1 LGCPGFTLPEVKPNPVEGGASK Unmodified 2253.1464 0.14635325 1155 P48506 GCLC Glutamate--cysteine ligase catalytic subunit yes yes 0 0 0 0 1 8 0 1 63.098 63.098 4 0.0028207 18778 TMT1-7 47.392 32.138 37.842 81.515 63.018 50.077 101.56 82.382 36 80 65 51 102 80 1 1 1 1 1 1 5322.2 11559 1155 11441 17976 23465 23465 1 LGCTLPQLAIAWCLR Unmodified 1770.9273 0.92731611 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 0 9 0 1 81.821 81.821 3 0.021362 24284 TMT1-8 42.958 7.5438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11560 1691 11442 17977 23466 23466 1 LGDAVEQGVINNTVLGYFIGR Unmodified 2234.1695 0.16953153 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 8 0 1 91.458 91.458 3 1.6308E-06 29537 TMT1-7 78.324 66.021 31.873 28.217 29.295 29.441 27.141 53.592 30 29 30 29 29 51 2 2 2 2 2 2 10560 11561 1084 11443 17978 23467;23468 23467 2 LGDDIDLIVR Unmodified 1127.6186 0.61863837 144 O15371-2;O15371-3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 0 4 0 1 67.123 67.123 2 0.0015924 21032 TMT1-3 102.06 75.389 107.85 199.62 99.078 142.32 138.9 181.52 102 196 109 138 145 174 1 1 1 1 1 1 19093 11562 144 11444 17979 23469 23469 1 LGDLVWGK Unmodified 886.49125 0.49125301 1936 Q49A26-5;Q49A26-2;Q49A26-3;Q49A26 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 0 8 0 1 67.796 67.796 2 0.022815 20615 TMT1-7 86.953 43.707 46.555 73.732 47.898 58.937 85.193 90.311 44 73 51 58 87 87 1 1 1 1 1 1 8645.1 11563 1936 11445 17980 23470 23470 1 LGDLYEEEMR Unmodified 1253.5598 0.55980286 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2.67 0.471 1 2 58.272 58.272 2;3 7.3788E-21 18210 TMT1-1 200.86 162.31 780.47 1385 561.75 689.38 734.94 1407.5 737 1360 628 674 777 1340 5 5 5 5 4 5 286050 11564 575 11446 17981;17982;17983 23471;23472;23473;23474;23475 23471 5 LGDPAEYAHLVQAIIENPFLNGEVIR Unmodified 2877.5025 0.50249299 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 8 0 2 98.931 98.931 3;4 2.9095E-05 32465 TMT1-7 54.152 42.024 19.118 29.496 34.542 33.678 17.684 44.267 18 29 35 33 19 42 3 3 3 3 2 4 5720.4 11565 2485 11447 17984;17985 23476;23477;23478;23479 23479 4 LGDSESVSK Unmodified 920.44509 0.44509068 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 4 0 1 40.089 40.089 2 0.0018969 10327 TMT1-3 110.76 54.634 247.48 220.86 238.17 230.32 132.84 301.09 233 227 243 226 147 286 1 1 1 1 1 1 47956 11566 1723 11448 17986 23480 23480 1 LGDSHDLQR Unmodified 1039.5047 0.50467125 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 30.757 30.757 3 0.00021938 7622 TMT1-2 123.86 66.301 61.534 72.584 56.145 43.676 56.85 52.744 58 73 58 44 58 51 1 1 1 1 1 1 15575 11567 1737 11449 17987 23481 23481 1 LGDTALHAAAWK Unmodified 1252.6564 0.65642086 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 52.98 52.98 3 1.2382E-08 14584 TMT1-6 111.63 76.406 307.85 603.4 406.49 374.63 411.3 558.57 292 593 426 372 428 535 1 1 1 1 1 1 57587 11568 2324 11450 17988;17989 23482;23483 23482 2 LGDVISIQPCPDVK Unmodified 1539.7967 0.79667909 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 6 0 1 65.642 65.642 4 0.012315 20351 TMT1-5 51.009 38.844 115.01 174.38 179.8 112.16 207.79 195.54 109 174 181 116 210 189 1 1 1 1 1 1 15472 11569 1311 11451 17990 23484 23484 1 LGDVYVNDAFGTAHR Unmodified 1633.7849 0.78486885 397 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 0 5.25 0.433 3 1 54.94 54.94 2;3 2.5786E-53 15736 TMT1-4 221.09 172.49 976.5 1378.6 983.27 929.14 1179.8 1471.5 922 1373 1028 924 1217 1412 5 5 5 5 5 5 444300 11570 397 11452 17991;17992;17993;17994 23485;23486;23487;23488;23489 23485 5 LGEDIVITAHVLK Unmodified 1406.8133 0.81331543 2704 Q9NPJ3-2;Q9NPJ3 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes no 0 0 0 0 0 6 0 1 64.333 64.333 3 0.0016354 19811 TMT1-5 72.089 46.872 92.266 115.79 84.198 56.644 92.078 106.1 87 116 87 58 94 102 1 1 1 1 1 1 8669.4 11571 2704 11453 17995 23490 23490 1 LGEGSYGSVYK Unmodified 1158.5557 0.55570376 1665 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 0 6 0 1 49.176 49.176 2 1.6405E-05 13820 TMT1-5 121.9 45.294 92.144 123.01 98.621 87.513 90.402 113.61 87 123 102 87 94 109 1 1 1 1 1 1 11555 11572 1665 11454 17996 23491 23491 1 LGEIVTTIPTIGFNVETVEYK Unmodified 2322.2359 0.23587976 1519;1520;774 P84085;P84077;P61204;P18085 ARF5;ARF1;ARF3;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4 no no 0 0 0 0 0 7.5 0.5 1 1 86.674 86.674 3;4 1.4794E-24 27875 TMT1-6 139.81 119.37 174.91 284.32 298.82 224.61 244.4 319.22 166 283 302 226 254 306 4 4 4 4 4 4 108860 11573 1520;1519;774 11455 17997;17998 23492;23493;23494;23495 23493 4 LGELGLVEFR Unmodified 1131.6288 0.62880913 1709 Q13488 TCIRG1 V-type proton ATPase 116 kDa subunit a isoform 3 yes yes 0 0 0 0 0 6 0 1 69.902 69.902 2 0.027087 21994 TMT1-5 72.243 33.095 69.054 72.094 55.109 66.741 54.214 98.657 65 73 58 65 58 94 1 1 1 1 1 1 6186.4 11574 1709 11456 17999 23496 23496 1 LGELPADHPK Unmodified 1075.5662 0.56620887 1887 Q16512-2;Q16512;Q16512-3 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 5 0 1 41.699 41.699 3 0.020199 10754 TMT1-4 54.776 23.702 152.16 369.46 262.42 176.68 292.95 340.22 145 361 271 181 299 327 1 1 1 1 1 1 9708.4 11575 1887 11457 18000 23497 23497 1 LGELTDLHGLR Unmodified 1222.667 0.66698555 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5.5 0.5 1 1 54.78 54.78 3 1.0901E-06 15922 TMT1-4 127.93 121.19 215.17 259.42 225.99 212.52 246.24 281.86 203 261 233 211 254 271 2 2 2 2 2 2 49082 11576 2066 11458 18001;18002 23498;23499 23498 2 LGEPDYIPSQQDILLAR Unmodified 1927.0051 0.005091963 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 4 0 1 69.056 69.056 3 1.2485E-07 21761 TMT1-3 74.428 69.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11577 1773 11459 18003 23500 23500 1 LGESANAAK Unmodified 859.43995 0.43994572 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 5 0 1 35.874 35.874 2 0.00042803 8404 TMT1-4 138.06 65.024 108.34 122.2 81.62 104.06 135.97 104.85 102 123 87 102 138 102 1 1 1 1 1 1 11100 11578 2664 11460 18004 23501 23501 1 LGETYKDHENIVIAK Unmodified 1728.9046 0.90464964 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 6 0 1 48.059 48.059 4 1.0624E-10 13443 TMT1-5 123.38 89.205 599.35 826.71 638.83 606.03 563.83 863.36 566 825 664 599 594 825 2 2 2 2 2 2 142120 11579 530 11461 18005 23502;23503 23503 2 LGEWNEK Unmodified 874.41848 0.418482 172 O43399;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 5 0 1 49.523 49.523 2 0.018912 13806 TMT1-4 98.458 31.465 200.48 258.13 171.47 152.37 188.28 283.51 189 258 180 152 196 271 1 1 1 1 1 1 18743 11580 172 11462 18006 23504 23504 1 LGEWVGLCK Unmodified 1060.5376 0.53755128 884 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 0 8 0 1 66.072 66.072 2 0.0016243 19898 TMT1-7 116.73 100.52 299 506.99 353.79 328.31 425.94 437.7 283 501 370 327 436 422 2 2 2 2 2 2 49631 11581 884 11463 18007 23505;23506 23505 2 LGEYGFQNALIVR Unmodified 1478.7882 0.78816332 29 CON__P02769 yes yes 0 0 0 0 0 7 0 1 67.213 67.213 2 0.020143 20337 TMT1-6 64.64 35.897 37.593 33.332 145.78 30.149 27.109 53.592 36 36 138 36 29 51 1 1 1 1 1 1 10168 + 11582 29 11464 18008 23507 23507 1 LGFAGLVQEISFGTTK Unmodified 1666.893 0.89302232 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 9 0 1 84.415 84.415 3 1.3658E-11 25255 TMT1-8 113.52 86.491 153.53 180.07 192.72 198.75 212.49 247.64 145 182 197 196 220 238 1 1 1 1 1 1 44679 11583 1161 11465 18009 23508 23508 1 LGFEEFK Unmodified 868.43307 0.43306943 475 P04632;Q96L46 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 0 0 0 0 0 6.5 0.5 1 1 60.711 60.711 2 0.027841 18279 TMT1-5 91.626 26.823 1416.8 2197.4 1844.7 1399.8 1725.3 2135 1341 2184 1891 1411 1781 2049 3 3 3 3 3 3 239630 11584 475 11466 18010;18011 23509;23510;23511 23509 3 LGFGSFVDK Unmodified 968.49673 0.49673232 773 P18084 ITGB5 Integrin beta-5 yes yes 0 0 0 0 0 8 0 1 63.848 63.848 2 0.0019128 19038 TMT1-7 110.41 0 392.53 1009.1 619.19 533.25 776.19 777.35 374 983 652 535 791 750 1 1 1 1 1 1 96539 11585 773 11467 18012 23512 23512 1 LGFGSFVEK Unmodified 982.51238 0.51238239 779 P18564-2;P18564 ITGB6 Integrin beta-6 yes no 0 0 0 0 0 8 0 1 63.278 63.278 2 0.0012253 18804 TMT1-7 122.52 0 696.34 1342.4 1032.1 763.3 951.13 1315 661 1322 1063 771 986 1259 2 2 2 2 2 2 215260 11586 779 11468 18013 23513;23514 23513 2 LGFHLPLEVAYQR Unmodified 1541.8354 0.83544786 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8.5 0.5 1 1 64.537 64.537 3 9.3976E-05 19365 TMT1-7 92.943 89.243 176.96 208.19 198.42 176.04 123.24 165.98 167 210 203 174 131 159 2 2 2 2 2 2 50048 11587 1833 11469 18014;18015 23515;23516 23515 2 LGFMSAFVK Unmodified 998.52592 0.52592396 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 9 0 1 73.562 73.562 2 0.0043352 21049 TMT1-8 103.56 67.683 207.65 239.42 243.47 188.01 215.91 314.71 196 242 247 189 225 301 2 2 2 2 2 2 22424 11588 1046 11470 18016 23517;23518 23517 2 LGFVAGVINR Unmodified 1044.608 0.60801411 2341 Q93050-1;Q93050;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 0 9 0 1 62.919 62.919 2 0.03319 16842 TMT1-8 66.073 43.942 68.619 124.85 83.406 64.9 62.397 76.037 65 123 87 65 65 73 1 1 1 1 1 1 9568.3 11589 2341 11471 18017 23519 23519 1 LGFYGLDESDLDKVFHLPTTTFIGGQESALPLR Unmodified 3635.8512 0.85116409 1566 Q02218;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 1 8 0 1 87.998 87.998 4 2.3516E-14 28322 TMT1-7 88.293 78.497 7.3084 22.667 14.833 0 22.228 22.818 7 22 15 0 22 22 1 1 1 0 1 1 6097.7 11590 1566 11472 18018 23520 23520 1 LGGAVLSFSEATSSVQK Unmodified 1679.873 0.87301516 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 67.616 67.616 3 0.00021296 20544 TMT1-7 73.833 53.452 46.49 88.66 46.249 75.863 62.186 67.515 44 87 51 73 65 65 1 1 1 1 1 1 5961.8 11591 917 11473 18019 23521 23521 1 LGGDLGTYVINK Unmodified 1248.6714 0.67140222 1894 Q16595;Q16595-2;Q16595-3 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes no 0 0 0 0 0 7 0 1 63.949 63.949 3 0.0080788 19049 TMT1-6 61.435 22.434 84.908 85.434 84.296 96.168 82.418 121.3 80 87 87 94 87 116 1 1 1 1 1 1 9985 11592 1894 11474 18020 23522 23522 1 LGGEVSCLVAGTK Unmodified 1289.6649 0.66493664 693 P13804 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 0 0 0 0 0 7 0 1 60.945 60.945 3 0.0023206 17877 TMT1-6 67.997 38.19 206.49 398.08 303.85 222 309.26 322.7 196 392 313 225 316 311 2 2 2 2 2 2 21583 11593 693 11475 18021 23523;23524 23524 2 LGGHGPSFPLK Unmodified 1108.6029 0.60292873 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 1 48.638 48.638 2 2.6657E-05 11247 TMT1-8 96.948 54.964 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11594 676 11476 18022 23525 23525 1 LGGIGQFLAK Unmodified 1002.5862 0.58621603 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 9 0 1 68.183 68.183 2 0.0044164 18929 TMT1-8 93.374 54.582 191.88 236.02 191.72 214.35 199.77 201.1 181 237 200 210 207 194 1 1 1 1 1 1 33235 11595 1619 11477 18023 23526 23526 1 LGGLTQAPGNPVLAVQINQDK Unmodified 2132.159 0.15896684 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 8 0 1 68.417 68.417 3 2.1727E-14 20862 TMT1-7 93.255 75.338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11596 896 11478 18024 23527 23527 1 LGGLTQAPGNPVLAVQINQDKNFAFLEFR Unmodified 3156.672 0.67201793 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 1 9 0 1 81.523 81.523 4 1.6456E-09 24171 TMT1-8 70.647 59.413 61.796 57.123 25.27 53.191 55.607 76.231 58 58 29 51 58 73 1 1 1 1 1 1 5534.6 11597 896 11479 18025 23528 23528 1 LGGPEAGLGEYLFER Unmodified 1606.7991 0.79912193 452 P02792 FTL Ferritin light chain yes yes 0 0 0 0 0 5 0 1 71.634 71.634 3 3.2705E-11 22552 TMT1-4 127.3 113.55 84.86 92.857 85.961 73.086 83.977 137.25 80 94 88 73 88 131 2 2 2 2 2 2 29985 11598 452 11480 18026 23529;23530 23530 2 LGGSAVISLEGK Unmodified 1129.6343 0.63428844 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 7 0 1 59.109 59.109 2 5.7825E-05 17090 TMT1-6 109.24 65.033 77.618 47.71 79.002 96.617 75.325 114.04 73 51 80 94 80 109 1 1 1 1 1 1 14344 11599 865 11481 18027 23531 23531 1 LGGSAVISLEGKPL Unmodified 1339.7711 0.77111627 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 6.8 2.99 1 1 1 2 67.385 67.385 2;3 1.2274E-16 20431 TMT1-7 143.76 116.43 4881.5 6886.7 5994.2 5015.3 5611.3 7926.6 4615 6876 6151 5012 5845 7586 11 11 11 11 11 11 1265900 11600 865 11482 18028;18029;18030;18031;18032 23532;23533;23534;23535;23536;23537;23538;23539;23540;23541;23542 23539 11 LGGSLADSYLDEGFLLDK Unmodified 1911.9466 0.94657403 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 5.5 0.5 1 1 82.206 82.206 3 9.3332E-11 26615 TMT1-4 114.29 90.492 68.77 125.27 57.786 105.1 98.52 97.393 65 123 65 101 102 94 2 2 2 2 2 2 15143 11601 1504 11483 18033;18034 23543;23544 23543 2 LGGSLIVAFEGCPV Unmodified 1417.7275 0.72753689 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 0 6.67 0.471 1 2 87.934 87.934 2;3 7.2858E-14 28316 TMT1-6 131.44 111.66 76.399 87.309 70.077 73.753 98.861 129.36 72 88 73 73 102 124 4 4 4 4 4 4 74380 11602 1364 11484 18035;18036;18037 23545;23546;23547;23548 23547 4 LGGSPFGPAGTGK Unmodified 1144.5877 0.58767259 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 52.863 52.863 3 0.00032467 14736 TMT1-7 83.617 54.277 77.432 117.35 51.301 90.325 90.822 97.612 73 116 58 87 94 94 1 1 1 1 1 1 6273.3 11603 1763 11485 18038 23549 23549 1 LGGSPTSLGTWGSWIGPDHDK Unmodified 2167.0334 0.033431979 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 8 0 1 67.411 67.411 3 2.651E-12 20449 TMT1-7 104.29 81.637 61.297 63.292 103.78 55.588 86.153 66.832 58 65 102 58 87 65 1 1 1 1 1 1 18704 11604 700 11486 18039 23550 23550 1 LGGSQEDQIK Unmodified 1073.5353 0.53530267 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 4 0 1 42.097 42.097 3 1.9375E-05 11115 TMT1-3 139.43 73.134 233.64 303.24 330.56 208.7 350.64 292.74 221 305 332 215 354 284 1 1 1 1 1 1 36170 11605 1053 11487 18040 23551 23551 1 LGGTIDDCELVEGLVLTQK Unmodified 2059.0507 0.050721527 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 5 0 1 80.461 80.461 3 7.6208E-31 25916 TMT1-4 149.73 124.14 68.614 117.28 90.755 80.142 100.44 74.952 65 116 94 80 102 73 1 1 1 1 1 1 24837 11606 1233 11488 18041 23552 23552 1 LGHLQSSWDR Unmodified 1197.5891 0.58906958 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 1 42.137 42.137 3 0.00094907 10459 TMT1-6 91.658 82.965 30.561 51.368 49.965 44.479 33.779 53.402 29 51 51 44 36 51 1 1 1 1 1 1 7694.9 11607 651 11489 18042 23553 23553 1 LGHPDTLNQGEFK Unmodified 1454.7154 0.7153923 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 4.25 1.92 1 2 1 45.459 45.459 3;4 1.0072E-21 12115 TMT1-4 182.03 138.26 1941.3 3280.1 2048.5 1963.7 2714.9 2659 1836 3238 2165 1955 2769 2567 5 5 5 5 5 5 461390 11608 509 11490 18043;18044;18045;18046 23554;23555;23556;23557;23558 23555 5 LGHPEALSAGTGSPQPPSFTYAQQR Unmodified 2596.267 0.26701374 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 7.33 0.943 1 2 51.943 51.943 3;4 5.0865E-19 14365 TMT1-7 105.22 91.353 429.75 696.37 399.8 489.92 578.86 703.03 406 688 428 480 598 675 6 6 5 6 6 6 78030 11609 1881 11491 18047;18048;18049 23559;23560;23561;23562;23563;23564 23564 6 LGHPEPNHVTEASELLR Unmodified 1897.9646 0.96462413 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 6 0 1 42.579 42.579 4 0.0049483 11180 TMT1-5 51.785 38.953 99.522 130.76 114.41 61.804 128.75 158.36 94 131 116 65 131 152 1 1 1 1 1 1 15308 11610 2066 11492 18050 23565 23565 1 LGHTDILVGVK Unmodified 1150.671 0.67100829 1814 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 0 7 0 1 52.151 52.151 3 0.015457 14374 TMT1-6 56.359 35.458 76.92 147.22 112.11 93.957 111.82 151.38 73 145 116 94 116 145 1 1 1 1 1 1 6116.5 11611 1814 11493 18051 23566 23566 1 LGHYATQLQNTYDR Unmodified 1678.8063 0.80633258 1253 P51692 STAT5B Signal transducer and activator of transcription 5B yes yes 0 0 0 0 0 5 0 1 45.678 45.678 3 0.0032555 12298 TMT1-4 47.037 41.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11612 1253 11494 18052 23567 23567 1 LGIAPQIQDLLGK Unmodified 1364.8028 0.80275075 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 9 0 1 78.437 78.437 3 0.00018765 23024 TMT1-8 85.522 56.048 123.77 166.74 155.54 131.7 117.41 151.22 117 167 159 131 123 145 2 2 2 2 2 2 30209 11613 1723 11495 18053 23568;23569 23569 2 LGIEGLSLHNVLK Unmodified 1391.8136 0.81364979 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 8 0 1 64.538 64.538 2 0.021616 19358 TMT1-7 64.224 33.654 38.21 51.24 26.794 29.575 27.941 30.117 36 51 29 29 29 29 1 1 1 1 1 1 4326.5 11614 2789 11496 18054 23570 23570 1 LGIFGDTEDVAGK Unmodified 1320.6561 0.65614609 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5.5 0.5 2 2 66.611 66.611 2;3 3.0834E-10 20487 TMT1-4 134.13 97.706 354.31 555.78 394.1 395.93 480.7 519.28 335 551 413 392 494 500 5 5 5 5 5 5 89128 11615 2344 11497 18055;18056;18057;18058 23571;23572;23573;23574;23575 23571 5 LGIHEDSQNR Unmodified 1167.5632 0.56324876 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 3.75 1.48 1 1 1 1 29.405 29.405 2;3 8.2962E-06 5954 TMT1-5 147.75 135.14 451.71 657.64 527.86 451.2 604.64 643.67 427 655 545 452 619 620 5 5 5 5 5 5 67007 11616 545 11498 18059;18060;18061;18062 23576;23577;23578;23579;23580 23580 5 LGIHEDSTNR Unmodified 1140.5523 0.55234972 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 3.5 1.8 1 1 1 1 30.2 30.2 3 8.2962E-06 6310 TMT1-5 147.75 126.31 275.32 388.43 285.43 252.01 340.96 364.44 260 387 297 252 349 351 5 5 5 5 5 5 80958 11617 561 11499 18063;18064;18065;18066 23581;23582;23583;23584;23585 23585 5 LGIHEDSTNRR Unmodified 1296.6535 0.65346075 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 1 5 0 1 25.915 25.915 4 0.038258 4504 TMT1-4 44.765 37.166 23.417 21.604 13.451 30.646 13.234 30.536 22 22 15 29 15 29 1 1 1 1 1 1 1109.6 11618 561 11500 18067 23586 23586 1 LGIHSALLDEK Unmodified 1194.6608 0.66083754 2102 Q86SX6 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 0 0 0 0 0 6 0 1 52.07 52.07 3 0.0015535 14945 TMT1-5 80.979 62.234 208.66 276.94 222.64 191.88 191.96 336.71 197 277 230 191 203 321 1 1 1 1 1 1 14342 11619 2102 11501 18068 23587 23587 1 LGIIGVVNR Unmodified 939.58655 0.58655038 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 58.092 58.092 2 0.0014594 14942 TMT1-8 123.99 55.504 241.35 203.82 200.1 234.15 224.65 394.41 227 210 207 229 238 376 1 1 1 1 1 1 51572 11620 68 11502 18069 23588 23588 1 LGIKPSINYYQVADFK Unmodified 1854.988 0.98798534 83 O00584 RNASET2 Ribonuclease T2 yes yes 0 0 0 0 1 9 0 1 65.782 65.782 3 4.9882E-08 17997 TMT1-8 102.78 77.059 46.256 88.01 86.097 56.649 85.811 75.369 44 87 87 58 87 73 1 1 1 1 1 1 9808.5 11621 83 11503 18070 23589 23589 1 LGILGSHEDLSK Unmodified 1267.6772 0.67721588 2946 Q9Y210-3;Q9Y210;Q9Y210-2 TRPC6 Short transient receptor potential channel 6 yes no 0 0 0 0 0 7 0 1 79.733 79.733 2 0.00070345 25204 TMT1-6 71.223 60.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11622 2946 11504 18071 23590 23590 1 LGILTHLYR Unmodified 1084.6393 0.63931423 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 9 0 1 58.19 58.19 3 3.6826E-05 14983 TMT1-8 137.13 67.306 45.565 65.4 41.111 28.312 49.715 67.871 43 65 43 29 51 65 1 1 1 1 1 1 14407 11623 2884 11505 18072 23591 23591 1 LGINLLGGPLGGK Unmodified 1207.7289 0.72885752 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 9 0 1 73.475 73.475 2 1.8873E-18 21026 TMT1-8 161.63 112.22 61.653 56.727 49.504 44.088 56.025 76.219 58 58 51 44 58 73 1 1 1 1 1 1 6874.3 11624 2251 11506 18073 23592 23592 1 LGIQTDDKGHIIVDEFQNTNVK Unmodified 2483.2656 0.26561676 389 P00390-2;P00390-3;P00390 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 1 6 0 1 60.974 60.974 4 5.374E-23 18470 TMT1-5 124.86 90.452 222.96 245.67 189.5 174.84 215.44 224.11 210 248 197 174 221 216 1 1 1 1 1 1 35340 11625 389 11507 18074 23593 23593 1 LGITHVLNAAEGR Unmodified 1349.7415 0.74154747 1241 P51452;P51452-2 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 0 7.5 0.5 1 1 50.751 50.751 3 3.3266E-06 13853 TMT1-7 90.156 72.292 214.95 306.3 223.15 188.76 240.08 279.9 203 305 232 189 247 269 2 2 2 2 2 2 66324 11626 1241 11508 18075;18076 23594;23595;23596 23596 3 LGIYTVLFER Unmodified 1209.6758 0.67575932 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 0 9 0 1 76.511 76.511 2 0.00039342 22204 TMT1-8 117.89 71.519 176.74 246.44 202.38 205.61 223.85 272.9 167 246 210 203 232 262 2 2 2 2 2 2 18356 11627 1575 11509 18077 23597;23598 23598 2 LGLALNYSVFYYEIQNAPEQACHLAK Unmodified 3011.4851 0.48512836 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 8.5 0.5 1 1 82.138 82.138 3;4 6.7782E-36 26243 TMT1-7 132.26 106.25 65.754 67.775 72.242 52.668 108.92 77.908 62 69 73 54 109 76 2 2 2 2 2 2 36476 11628 1411 11510 18078;18079 23599;23600 23599 2 LGLAPQIQDLYGK Unmodified 1414.782 0.78201531 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 69.485 69.485 3 9.347E-05 21342 TMT1-7 93.011 72.058 177.19 225.03 144.99 138.28 207.93 187.01 167 225 153 138 211 181 2 2 2 2 2 2 29878 11629 1139 11511 18080 23601;23602 23602 2 LGLDFPNLPYLIDGAHK Unmodified 1881.9989 0.99888437 591 P09488;P09488-2;Q03013-2;Q03013 GSTM1;GSTM4 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4 no no 0 0 0 0 0 8 0 2 79.699 79.699 3;4 7.3722E-08 25295 TMT1-7 101.15 91.618 131.47 236.9 64.988 150.31 228.56 209.88 124 232 80 145 232 203 3 3 3 3 3 3 39405 11630 591 11512 18081;18082 23603;23604;23605 23605 3 LGLDFPNLPYLIDGTHK Unmodified 1912.0094 0.0094490594 927 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 0 8 0 2 79.573 79.573 3;4 1.947E-07 25172 TMT1-7 95.767 65.708 146.52 180.89 108.64 142.8 141.24 143.08 138 181 117 139 146 138 3 3 3 3 3 3 28408 11631 927 11513 18083;18084 23606;23607;23608 23606 3 LGLDYEER Unmodified 993.47673 0.47672516 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 2.5 0.5 1 1 48.263 48.263 2 0.0029292 14615 TMT1-2 134.15 62.854 216.95 299.28 252.56 217.96 279.99 236.12 205 299 260 218 285 229 1 1 1 1 1 1 69385 11632 2479 11514 18085;18086 23609;23610 23610 2 LGLEDFESLK Unmodified 1149.5918 0.59175492 1836 Q15208 STK38 Serine/threonine-protein kinase 38 yes yes 0 0 0 0 0 5 0 1 70.768 70.768 2 0.0041841 22145 TMT1-4 64.82 41.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11633 1836 11515 18087 23611 23611 1 LGLELGK Unmodified 728.44324 0.44324019 661;1360 P11908;P11908-2;P60891 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 7 0 1 56.803 56.803 2 0.0243 16219 TMT1-6 94.262 20.287 770.26 1282.9 921.91 831.36 1226.7 1269.8 729 1269 961 832 1251 1224 1 1 1 1 1 1 89928 11634 661;1360 11516 18088 23612 23612 1 LGLENAEALIR Unmodified 1197.6717 0.67173657 626 P10155;P10155-3;P10155-5;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 0 5 0 1 64.621 64.621 2 1.8633E-05 19693 TMT1-4 120.65 104 54.112 73.345 40.601 52.389 49.67 36.959 51 73 44 51 51 36 1 1 1 1 1 1 16284 11635 626 11517 18089 23613 23613 1 LGLFVFSQEMVFFSDLK Oxidation (M) 2022.0172 0.017236554 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 1 0 0 9 0 1 96.613 96.613 3 4.8314E-08 29846 TMT1-8 84.874 22.184 66.078 33.058 47.305 27.672 64.109 75.989 62 36 47 29 65 73 2 2 2 2 2 2 7656 + 11636 32;554 11518 18090 23614;23615 23614 9 2 LGLFVFSQEMVFFSDLK Unmodified 2006.0223 0.022321932 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 9 0 2 104.67 104.67 3;4 3.8827E-08 32707 TMT1-8 84.41 65.352 54.173 74.26 49.219 51.997 43.191 76.586 51 74 52 51 45 73 3 4 4 4 3 4 4329.2 + 11637 32;554 11518 18091;18092 23616;23617;23618;23619 23617 4 LGLGEGAEEK Unmodified 1001.5029 0.50293991 783 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 0 4 0 1 46.725 46.725 2 0.035941 13004 TMT1-3 67.704 42.532 122.98 175.14 101.89 110.39 141.94 135.6 116 174 109 109 145 131 1 1 1 1 1 1 15275 11638 783 11519 18093 23620 23620 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR Unmodified 3531.6377 0.63766166 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 3 0.816 1 1 1 78.685 78.685 4 7.2258E-08 25812 TMT1-1 63.111 58.207 23.231 99.468 66.345 36.283 81.514 45.006 22 96 66 37 81 44 2 5 3 3 5 4 31991 11639 561 11520 18094;18095;18096 23621;23622;23623;23624;23625 23621 5 LGLHQVLQDLR Unmodified 1290.7408 0.74081919 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 8 0 1 57.13 57.13 3 2.1391E-12 16474 TMT1-7 172.8 137.13 185.04 277.43 224.71 196.06 253.63 301.9 175 276 232 196 261 290 2 2 2 2 2 2 134450 11640 228 11521 18097 23626;23627 23627 2 LGLIEWLENTVTLK Unmodified 1627.9185 0.91850879 1507 P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 0 0 0 0 0 9 0 1 99.512 99.512 3 5.7072E-07 30918 TMT1-8 102.73 71.092 55.293 49.827 42.364 44.361 64.132 83.45 52 51 44 44 66 80 2 2 2 2 2 2 6435.4 11641 1507 11522 18098 23628;23629 23629 2 LGLIPLISDDIVDK Unmodified 1509.8654 0.86541058 788 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 0 0 6.5 0.5 1 1 86.622 86.622 3 0.0014038 27834 TMT1-6 68.034 45.155 46.429 80.937 62.958 51.219 41.039 76.647 44 80 65 51 44 73 2 2 2 2 2 2 4832.2 11642 788 11523 18099;18100 23630;23631 23631 2 LGLLDNHSSEFNVTR Unmodified 1700.8482 0.84819739 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 6 0 1 55.364 55.364 3 0.012157 16249 TMT1-5 51.265 28.029 60.878 124.73 122.14 70.918 84.642 90.327 58 123 123 73 87 87 1 1 1 1 1 1 10886 11643 1042 11524 18101 23632 23632 1 LGLLEVK Unmodified 770.49019 0.49019038 876 P24557;P24557-2;P24557-3 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7 0 1 62.666 62.666 2 0.027324 18506 TMT1-6 91.906 17.058 84.487 115.56 129.54 108.75 142.02 135.59 80 116 131 109 145 131 1 1 1 1 1 1 12675 11644 876 11525 18102 23633 23633 1 LGLLGLANSLAIEGR Unmodified 1495.8722 0.8722273 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 9 0 2 80.561 80.561 2;3 5.7249E-37 23765 TMT1-8 196.7 154.35 69.505 155.56 88.788 72.641 98.693 135.76 66 152 94 73 102 130 2 2 2 2 2 2 53157 11645 1250 11526 18103;18104 23634;23635 23634 2 LGLNDILVK Unmodified 983.60153 0.60153174 2282 Q8WXE9;Q8WXE9-3 STON2 Stonin-2 yes no 0 0 0 0 0 8 0 1 68.289 68.289 2 0.0091114 20805 TMT1-7 90.15 26.664 84.407 131.53 129.29 92.794 119.2 151.17 80 131 131 94 123 145 1 1 1 1 1 1 8053.8 11646 2282 11527 18105 23636 23636 1 LGLPPLTPEQQEALQK Unmodified 1760.9672 0.96724989 2869 Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 0 7 0 1 66.391 66.391 3 2.6575E-08 19995 TMT1-6 87.148 62.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11647 2869 11528 18106 23637 23637 1 LGLQHLR Unmodified 835.50282 0.50282075 1520 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 0 8.5 0.5 1 1 36.775 36.775 3 0.00078984 8256 TMT1-7 137.83 24.748 191.1 294.29 273.87 186.42 203.72 275.61 181 293 278 189 212 264 2 2 2 2 2 2 27158 11648 1520 11529 18107;18108 23638;23639 23638 2 LGLQNDLFSLAR Unmodified 1345.7354 0.73539946 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 9 0 1 72.375 72.375 2 0.0021572 20612 TMT1-8 76.332 39.775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11649 1324 11530 18109 23640 23640 1 LGLQSLR Unmodified 785.47594 0.4759373 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 8 0 1 48.047 48.047 2 0.018037 12839 TMT1-7 99.139 78.584 351.96 558.6 426.03 331.35 442.6 496.92 333 554 440 334 454 478 1 1 1 1 1 1 46700 11650 774 11531 18110 23641 23641 1 LGLSLVVPGGGIK Unmodified 1208.7493 0.74925861 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 9 0 1 71.396 71.396 2 3.5512E-09 20220 TMT1-8 120.09 76.844 53.918 95.47 54.47 51.311 63.022 76.02 51 94 58 51 65 73 1 1 1 1 1 1 6535.6 11651 2490 11532 18111 23642 23642 1 LGLSTLGELK Unmodified 1029.607 0.60701105 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 7.5 0.5 1 1 65.845 65.845 2 6.9273E-05 19792 TMT1-7 143.04 109.4 399.88 610.41 443.34 353.45 490.82 433.71 378 606 460 356 499 420 3 3 3 3 3 3 53524 11652 172 11533 18112;18113 23643;23644;23645 23644 3 LGLTEAHK Unmodified 867.48142 0.48141661 2022 Q6NYC8;Q6NYC8-2 PPP1R18 Phostensin yes no 0 0 0 0 0 6 0 1 38.958 38.958 3 0.0068095 9770 TMT1-5 78.77 53.033 154.11 180.61 94.569 93.86 172.55 149.65 145 181 102 94 174 145 1 1 1 1 1 1 10404 11653 2022 11534 18114 23646 23646 1 LGLVEFNILWNR Unmodified 1472.814 0.81398414 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 9 0 2 84.573 84.573 2;3 3.2903E-13 25391 TMT1-8 164.97 128.28 106.81 160.94 125.6 109.24 128.44 104 101 160 130 109 131 101 2 2 2 2 2 2 60631 11654 536 11535 18115;18116 23647;23648 23648 2 LGLVFDDVVGIVEIINSK Unmodified 1929.0823 0.082279652 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 8.67 0.471 1 2 114.05 114.05 2;3 4.9424E-43 34251 TMT1-7 194 186.76 65.718 82.599 76.669 47.688 78.447 88.58 62 83 77 49 80 85 6 8 6 6 8 7 10596 11655 1555;1556 11536 18117;18118;18119 23649;23650;23651;23652;23653;23654;23655;23656 23650 8 LGMDGYR Unmodified 810.36942 0.36942332 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 5 0 1 42.082 42.082 2 0.040709 10860 TMT1-4 85.89 58.723 627.55 1204.8 628.09 528.91 513.98 1017.2 594 1182 672 527 548 968 1 1 1 1 1 1 88253 11656 1397 11537 18120 23657 23657 1 LGMFNIQHCK Unmodified 1246.5951 0.59508293 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 9 0 1 51.241 51.241 3 0.0011111 12281 TMT1-8 77.677 47.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11657 407 11538 18121 23658 23658 1 LGMIAGGTGITPMLQLIR Unmodified 1841.0267 0.026695803 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 9 0 1 84.483 84.483 3 0.040496 25361 TMT1-8 32.688 14.957 23.373 21.481 21.004 31.285 13.461 23.068 22 22 22 30 15 22 1 1 1 1 1 1 2769.7 11658 2867 11539 18122 23659 23659 1 LGMPQFLSTEAQSLLR Unmodified 1789.9397 0.93965493 1852 Q15418-4;Q15418;Q15418-2;Q15418-3 RPS6KA1 Ribosomal protein S6 kinase alpha-1 yes no 0 0 0 0 0 9 0 1 82.156 82.156 3 0.0092287 24416 TMT1-8 46.249 22.873 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11659 1852 11540 18123 23660 23660 1 LGNDFHTNKR Unmodified 1200.6 0.59996862 576 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 1 7 0 1 32.834 32.834 4 0.0095549 6725 TMT1-6 63.408 57.373 107.95 183.71 95.256 79.5 120.33 136.21 102 181 102 80 123 131 1 1 1 1 1 1 9667.5 11660 576 11541 18124 23661 23661 1 LGNDFMGITLASSQAVSNAR Unmodified 2051.0106 0.010588046 2688 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 8 0 1 72.075 72.075 3 3.5161E-14 22290 TMT1-7 115.39 100.21 99.754 131.41 74.931 72.788 76.677 106.54 94 131 80 72 80 102 2 2 2 2 2 2 13209 11661 2688 11542 18125 23662;23663 23663 2 LGNFFSPK Unmodified 908.4756 0.47560295 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 62.626 62.626 2 0.010456 16820 TMT1-8 89.698 54.403 261.35 390.4 287.41 206.62 365.62 346.68 247 388 297 211 370 335 2 2 2 2 2 2 41208 11662 1139 11543 18126 23664;23665 23665 2 LGNNCVFAPADVTSEKDVQTALALAK Unmodified 2731.3851 0.38507997 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 1 7 0 1 73.204 73.204 4 5.8161E-09 22680 TMT1-6 78.717 66.162 54.136 57.222 50.233 27.891 43.174 45.672 51 58 51 29 44 44 1 1 1 1 1 1 6049.2 11663 2485 11544 18127 23666 23666 1 LGNREDPLPQDSFEGVDEDEWD Unmodified 2561.083 0.083020526 1342 P57737-2;P57737-4;P57737 CORO7 Coronin-7 yes no 0 0 0 0 1 2 0 1 69.326 69.326 3 1.029E-05 22373 TMT1-1 66.606 63.844 7.3955 22.909 0 7.53 6.4333 15.806 7 22 0 7 7 15 1 1 0 1 1 1 4849.9 11664 1342 11545 18128 23667 23667 1 LGNTISSLFGGGTTPDAK Unmodified 1734.8788 0.87882882 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 8 0 1 74.93 74.93 3 0.016012 23526 TMT1-7 41.871 5.2331 69.126 56.108 56.42 58.842 63.226 60.024 65 58 58 58 65 58 1 1 1 1 1 1 11074 11665 3017 11546 18129 23668 23668 1 LGNWLAVR Unmodified 927.52904 0.5290355 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 9 0 1 62.356 62.356 2 0.0060881 16654 TMT1-8 108.92 56.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11666 2852 11547 18130 23669 23669 1 LGPAPLNLEVPTYEFTSDDMVIVG Unmodified 2576.272 0.27200727 1147 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 0 0 0 0 0 5 0 1 98.83 98.83 3 0.045521 32678 TMT1-4 28.765 23.661 7.4333 11.142 3.622 0 0 0 7 11 4 0 0 0 1 1 1 0 0 0 2030.9 11667 1147 11548 18131 23670 23670 1 LGPDDPNVAK Unmodified 1024.5189 0.51892433 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9;Q9H0B6-2;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 yes no 0 0 0 0 0 4 0 1 45.023 45.023 3 0.0098897 12284 TMT1-3 64.297 49.604 115.59 168.44 87.103 87.914 105.58 128.11 109 167 94 87 109 123 1 1 1 1 1 1 10762 11668 1613 11549 18132 23671 23671 1 LGPGGLDPVEVYESLPEELQK Unmodified 2268.1525 0.15254406 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 5.33 0.471 2 1 84.723 84.723 3;4 8.2628E-14 27541 TMT1-4 104.61 95.9 170.2 164.39 109.18 150.27 149 120.47 160 167 117 146 153 117 4 4 4 4 4 4 67994 11669 1891 11550 18133;18134;18135 23672;23673;23674;23675 23672 4 LGPGMADICK Unmodified 1060.5045 0.50453659 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 6.5 0.5 1 1 54.177 54.177 2 0.00015853 15769 TMT1-5 133.23 106.63 644.48 939.48 712.15 576.21 638.27 1233.3 609 935 737 577 676 1174 3 3 3 3 3 3 72757 11670 538 11551 18136;18137 23676;23677;23678 23676 3 LGPHTVLTFIFLEQMNK Unmodified 1987.0601 0.060104421 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 0 9 0 1 81.121 81.121 3 7.3022E-08 24009 TMT1-8 81.526 68.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11671 1575 11552 18138 23679 23679 1 LGPLFSLLNENHR Unmodified 1508.81 0.80996139 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 9 0 1 70.822 70.822 3 0.00012766 19971 TMT1-8 89.43 64.639 92.457 85.028 78.111 64.685 90.646 137.06 87 87 80 65 94 131 2 2 2 2 2 2 8719.9 11672 1886 11553 18139 23680;23681 23680 2 LGPLLDILADSR Unmodified 1281.7293 0.72925145 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 8 0 1 85.095 85.095 2 0.0030168 27192 TMT1-7 83 54.601 30.334 89.592 55.645 35.531 26.605 61.069 29 87 58 36 29 58 1 1 1 1 1 1 9369.9 11673 1736 11554 18140 23682 23682 1 LGPNYLHIPVNCPYR Unmodified 1811.9141 0.91410889 457 P04040 CAT Catalase yes yes 0 0 0 0 0 8 0 1 56.664 56.664 3 0.00031169 16179 TMT1-7 76.728 69.689 460.18 877.25 722.84 319.53 653.14 595.38 437 865 732 343 658 576 2 2 2 2 2 2 97527 11674 457 11555 18141 23683;23684 23683 2 LGPQDSDPTEANLESADPELCIR Unmodified 2526.1544 0.15441133 1916 Q27J81;Q27J81-2;Q27J81-3 INF2 Inverted formin-2 yes no 0 0 0 0 0 2.5 0.5 1 1 64.945 64.945 3 4.581E-23 20726 TMT1-1 122.34 108.47 62.788 42.793 51.018 53.01 41.726 54.241 59 45 52 52 44 52 3 3 3 3 3 3 22407 11675 1916 11556 18142;18143 23685;23686;23687 23685 3 LGPSDYFGEIALLMNRPR Unmodified 2048.0513 0.051330649 635 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 0 0 0 0 1 9 0 1 78.912 78.912 3 2.9924E-36 23165 TMT1-8 168.41 138.3 61.33 87.126 78.137 64.796 84.667 97.788 58 87 80 65 87 94 1 1 1 1 1 1 28334 11676 635 11557 18144 23688 23688 1 LGQAELVVIDEAAAIPLPLVK Unmodified 2158.2613 0.26130665 2608 Q9H0A0-2;Q9H0A0 NAT10 N-acetyltransferase 10 yes no 0 0 0 0 0 7 0 1 94.91 94.91 4 0.00028436 30816 TMT1-6 55.007 45.843 15.892 14.523 21.851 22.478 14.122 15.587 15 15 22 22 15 15 1 1 1 1 1 1 2783.1 11677 2608 11558 18145 23689 23689 1 LGQALELGYGLQVGTVWINAHGLR Unmodified 2564.3863 0.38634102 2157 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 9 0 1 81.437 81.437 4 0.021998 24134 TMT1-8 30.958 14.079 30.636 35.387 50.932 44.268 41.908 60.632 29 36 51 44 44 58 1 1 1 1 1 1 4461.4 11678 2157 11559 18146 23690 23690 1 LGQEATVGK Unmodified 901.4869 0.48689592 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 5 0 1 41.576 41.576 3 0.0041801 10672 TMT1-4 53.683 19.605 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11679 1283 11560 18147 23691 23691 1 LGQLEGLLQAHGDEGCGACGGVQEELGR Unmodified 2909.3396 0.33960311 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 4 0 1 67.794 67.794 4 1.7571E-16 21221 TMT1-3 92.363 90.448 23.216 44.789 27.593 22.022 20.153 53.791 22 44 29 22 22 51 1 1 1 1 1 1 9931 11680 3051 11561 18148 23692 23692 1 LGQMVLEYDHPLKK Unmodified 1669.8862 0.8861628 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 1 8 0 1 57.658 57.658 4 0.00011175 16613 TMT1-7 83.729 61.888 84.409 162.84 102.45 118.76 102.03 190.03 80 160 109 116 109 181 1 1 1 1 1 1 17294 11681 1314 11562 18149 23693 23693 1 LGQMVLSGVDTVLGK Unmodified 1515.8331 0.8330646 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 0 9 0 1 86.301 86.301 3 1.0266E-07 26003 TMT1-8 103.88 72.032 38.028 89.588 24.841 21.773 42.136 84.078 36 87 29 22 44 80 1 1 1 1 1 1 8458.9 11682 231 11563 18150 23694 23694 1 LGQSDPAPLQHQMDIYQK Unmodified 2068.0048 0.004774387 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 6 0 1 53.787 53.787 3 7.4805E-27 15641 TMT1-5 157.47 140.97 68.526 124.59 99.336 72.002 99.235 120.82 65 123 102 73 102 116 1 1 1 1 1 1 30366 11683 937 11564 18151 23695 23695 1 LGQSVTTIPTVGFNVETVTYK Unmodified 2253.1893 0.18926392 1436 P62330 ARF6 ADP-ribosylation factor 6 yes yes 0 0 0 0 0 8 0 1 74.474 74.474 4 1.2318E-07 23245 TMT1-7 86.539 71.118 37.735 73.662 87.687 41.233 86.813 66.813 36 73 87 44 87 65 1 1 1 1 1 1 9205.1 11684 1436 11565 18152 23696 23696 1 LGQYGFPNPEWSEVSEDAK Unmodified 2151.9749 0.97491405 1898 Q16644 MAPKAPK3 MAP kinase-activated protein kinase 3 yes yes 0 0 0 0 0 5 0 1 70.751 70.751 3 3.1167E-07 22123 TMT1-4 89.344 64.29 23.167 36.018 43.325 45.013 26.425 53.612 22 36 44 44 29 51 1 1 1 1 1 1 9773.6 11685 1898 11566 18153 23697 23697 1 LGSAADFLLDISETDLSSLTASIK Unmodified 2466.2741 0.27411576 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 7 0 1 106.71 106.71 4 5.7334E-07 33747 TMT1-6 74.561 52.962 5.2995 4.8474 6.8935 8.1481 9.8391 7.1812 5 5 7 8 10 7 1 1 1 1 1 1 792.28 11686 270 11567 18154 23698 23698 1 LGSEAIEALR Unmodified 1057.5768 0.57677356 3082 yes yes 0 0 0 0 0 5 0 1 63.431 63.431 2 0.0053056 19252 TMT1-4 91.064 15.372 176.95 226.5 185.32 129.81 123.53 219.27 167 227 190 131 131 209 1 1 1 1 1 1 28104 + 11687 3082 11568 18155 23699 23699 1 LGSIAIQGAIEK Unmodified 1198.6921 0.69213767 878 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 61.745 61.745 3 4.2684E-05 18113 TMT1-6 102.66 58.853 122.51 166.28 188.52 120.92 179.69 149.44 116 167 189 124 182 145 2 2 2 2 2 2 31574 11688 878 11569 18156;18157 23700;23701 23700 2 LGSISCK Unmodified 763.38982 0.38982441 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8 0 1 43.863 43.863 2 0.014822 11166 TMT1-7 101.64 30.731 312.72 399.45 302.99 251.72 301.06 399.69 295 400 314 252 312 383 1 1 1 1 1 1 27034 11689 1297 11570 18158 23702 23702 1 LGSLSER Unmodified 760.40792 0.40791731 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 5 0 1 38.899 38.899 2 0.0071718 9609 TMT1-4 78.178 4.5412 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11690 231 11571 18159 23703 23703 1 LGSLVDEFK Unmodified 1006.5335 0.53351176 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 6 0 1 69.11 69.11 2 0.0018425 21687 TMT1-5 111.95 73.155 243.19 525.87 340.33 368.49 482.9 461.66 231 515 360 364 493 446 1 1 1 1 1 1 51211 11691 675 11572 18160 23704 23704 1 LGSLVENNER Unmodified 1129.5728 0.57275081 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 4 0 1 46.462 46.462 2 0.025763 12868 TMT1-3 72.922 34.646 215.33 253.4 203.22 172.99 270.19 216.15 203 255 210 174 273 210 1 1 1 1 1 1 18991 11692 2476 11573 18161 23705 23705 1 LGSPDEEFFHK Unmodified 1304.6037 0.60371659 1649 Q12846 STX4 Syntaxin-4 yes yes 0 0 0 0 0 5 0 1 54.785 54.785 3 0.0002414 15902 TMT1-4 99.215 84.958 146.25 148.86 180.07 137.05 162.43 173.39 138 152 181 138 167 167 1 1 1 1 1 1 19285 11693 1649 11574 18162 23706 23706 1 LGSQIFVK Unmodified 890.52255 0.52255314 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 9 0 1 57.873 57.873 2 0.007227 14929 TMT1-8 114.89 62.211 198.92 293.55 222.93 212.73 244.95 319.21 188 292 232 211 254 306 2 2 2 2 2 2 24861 11694 2852 11575 18163 23707;23708 23708 2 LGSSFTK Unmodified 738.3912 0.39120462 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 8 0 1 46.314 46.314 2 0.0076903 12175 TMT1-7 124.83 62.12 409.46 665.66 409.38 505.87 456.08 723.59 387 658 438 493 482 691 1 1 1 1 1 1 62730 11695 1910 11576 18164 23709 23709 1 LGSSSLTNIPEEVR Unmodified 1500.7784 0.77838649 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 0 5 0 1 56.412 56.412 2 4.1536E-07 16527 TMT1-4 113.42 75.116 15.704 45.301 27.271 29.403 35.535 22.438 15 44 29 29 36 22 1 1 1 1 1 1 2916.3 11696 2029 11577 18165 23710 23710 1 LGSTVFVANLDYK Unmodified 1425.7504 0.75038083 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 8 0 1 68.753 68.753 3 2.6905E-08 20955 TMT1-7 119.39 83.426 138.65 214.96 138.86 99.547 194.78 165 131 213 145 102 196 160 1 1 1 1 1 1 42498 11697 1261 11578 18166 23711 23711 1 LGSVSLIPLR Unmodified 1053.6546 0.65462995 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 66.303 66.303 2 0.037655 18217 TMT1-8 57.708 32.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11698 2440 11579 18167 23712 23712 1 LGTDESCFNMILATR Unmodified 1726.8018 0.80184082 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 6 0 1 69.246 69.246 3 1.1245E-05 21731 TMT1-5 92.773 57.036 54.018 73.085 56.532 35.173 42.839 45.682 51 73 58 36 44 44 1 1 1 1 1 1 15333 11699 804 11580 18168 23713 23713 1 LGTLSALDILIK Unmodified 1255.7751 0.77513901 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 1 84.51 84.51 3 6.8136E-08 25246 TMT1-8 123.8 60.518 154.99 156.25 147.82 145.61 215.95 156.94 146 159 152 145 218 153 2 2 2 2 2 2 24234 11700 2116 11581 18169 23714;23715 23714 2 LGTLSPAFSTR Unmodified 1148.619 0.61897272 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 56.159 56.159 2 3.3352E-11 14274 TMT1-8 159.34 109.5 138.59 188.87 172.27 113.45 163.52 173.36 131 189 175 116 167 167 2 2 2 2 2 2 26590 11701 2071 11582 18170 23716;23717 23717 2 LGTPQQIAIAR Unmodified 1166.6772 0.6771563 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7 0 1 49.539 49.539 2 0.0003752 13321 TMT1-6 103.87 69.34 77.062 147.62 87.798 104.71 82.282 113.85 73 145 94 102 87 109 1 1 1 1 1 1 20527 11702 2079;2399 11583 18171 23718 23718 1 LGTQTFCSR Unmodified 1068.5022 0.50222841 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 7 0 1 41.815 41.815 2 2.2488E-05 10292 TMT1-6 126.55 112.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11703 2525 11584 18172 23719 23719 1 LGTSELLLAK Unmodified 1043.6227 0.62266112 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 63.773 63.773 2 0.003643 18984 TMT1-6 95.502 28.82 68.543 101.98 115.52 79.256 69.051 106.76 65 102 116 80 73 102 1 1 1 1 1 1 8869.3 11704 2911 11585 18173 23720 23720 1 LGTTNYDDFLSFIHAVQDR Unmodified 2211.0596 0.059646729 2282 Q8WXE9;Q8WXE9-3 STON2 Stonin-2 yes no 0 0 0 0 0 7.5 0.5 1 1 80.376 80.376 3 0.00018408 25505 TMT1-7 64.377 60.409 76.072 116.62 100.17 63.221 98.592 120.84 72 116 102 65 101 116 2 2 2 2 2 2 12428 11705 2282 11586 18174;18175 23721;23722 23722 2 LGVGAELLVDVGQR Unmodified 1424.7987 0.798728 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 6 0 3 71.337 71.337 2 3.6257E-08 22548 TMT1-5 101.71 73.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11706 800 11587 18176;18177;18178 23723;23724;23725 23724 3 LGVGTGISNGEVVDWMDSTGEEVSLWQK Unmodified 2992.4124 0.41241693 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 5 0 1 90.751 90.751 4 0.017473 29906 TMT1-4 32.368 20.403 23.403 14.011 22.192 14.672 21.297 30.306 22 15 22 15 22 29 1 1 1 1 1 1 2100.6 11707 2378 11588 18179 23726 23726 1 LGVIEDHSNR Unmodified 1138.5731 0.57308516 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 0 4 1.87 1 1 1 1 37.411 37.411 3 1.1836E-14 9267 TMT1-3 180.09 139.74 920.5 1230.5 963.35 829.08 1042.4 1342.2 869 1230 997 829 1077 1287 5 5 5 5 5 5 250780 11708 708 11589 18180;18181;18182;18183 23727;23728;23729;23730;23731 23729 5 LGVLHPDVITK Unmodified 1190.7023 0.70230842 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 8 0 1 53.372 53.372 3 0.021431 14919 TMT1-7 52.693 20.758 240.06 475.63 367.19 222.1 393.49 367.2 228 468 376 230 398 355 1 1 1 1 1 1 17909 11709 2740 11590 18184 23732 23732 1 LGVLHVGQK Unmodified 949.5709 0.57090032 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 9 0 1 45.838 45.838 3 0.00018253 10206 TMT1-8 126.28 79.614 440.71 568.92 469.23 333.38 430.13 552.71 416 570 481 338 444 530 2 2 2 2 2 2 50872 11710 2744 11591 18185 23733;23734 23734 2 LGVLYDLDK Unmodified 1034.5648 0.56481189 3013 Q9Y4F9-2;Q9Y4F9 FAM65B Protein FAM65B yes no 0 0 0 0 0 6 0 1 68.181 68.181 2 0.013745 21351 TMT1-5 83.783 34.987 46.516 81.179 48.116 44.027 63.65 67.474 44 80 51 44 65 65 1 1 1 1 1 1 5354.5 11711 3013 11592 18186 23735 23735 1 LGVPLLPLTPAIYTGAVEEPAEVPVPEQGWR Unmodified 3297.7649 0.76491526 1939 Q4G176 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial yes yes 0 0 0 0 0 7 0 1 92.932 92.932 4 0.016046 30130 TMT1-6 30.602 24.636 15.899 22.099 14.149 15.152 21.275 30.307 15 22 15 15 22 29 1 1 1 1 1 1 2530.1 11712 1939 11593 18187 23736 23736 1 LGVQDLFNSSK Unmodified 1206.6245 0.62445203 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 7.67 0.471 1 2 65.533 65.533 2;3 5.4712E-17 19669 TMT1-7 188.99 172.84 717.47 1298.6 764.04 741.12 713.51 953.96 679 1278 812 732 746 914 2 2 2 2 2 2 237230 11713 967 11594 18188;18189;18190 23737;23738;23739 23738 3 LGVQVVITDPEKLDQIR Unmodified 1922.0837 0.083676635 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 1 6.5 0.5 1 1 65.791 65.791 3 2.9387E-07 20366 TMT1-5 97.129 85.08 169.5 256.34 148.57 162.47 188.99 249.38 160 254 159 160 196 239 2 2 2 2 2 2 29858 11714 770 11595 18191;18192 23740;23741 23740 2 LGVRPSQGGEAPR Unmodified 1322.7055 0.70549632 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 1 6 0 1 30.326 30.326 3 0.00012312 6370 TMT1-5 96.313 75.162 61.493 72.471 63.076 58.278 72.141 44.845 58 73 65 58 73 44 1 1 1 1 1 1 8131.1 11715 442 11596 18193 23742 23742 1 LGVTANDVK Unmodified 915.50255 0.50254598 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 6 0 1 45.682 45.682 2 3.2078E-07 12414 TMT1-5 167.04 91.004 712.17 950.21 688.04 585.32 753.65 998.66 672 949 716 586 779 957 1 1 1 1 1 1 92742 11716 1074 11597 18194 23743 23743 1 LGVTGNIK Unmodified 800.4756 0.47560295 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 8 0 1 47.067 47.067 2 0.013083 12409 TMT1-7 95.741 32.594 107.64 182.85 148.14 108.07 119.01 136.25 102 181 152 109 123 131 1 1 1 1 1 1 43028 11717 1596 11598 18195 23744 23744 1 LGVVTFQAFIDFMSR Unmodified 1729.8862 0.8861628 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 9 0 1 100.43 100.43 3 6.5598E-18 31256 TMT1-8 135.02 107.34 53.678 150.12 103.36 118.9 91.583 130.64 51 146 109 116 96 125 3 5 6 6 5 6 29195 11718 672 11599 18196 23745;23746;23747;23748;23749;23750 23746 6 LGVYELLLK Unmodified 1046.6376 0.6375829 1784 Q14624-4;Q14624-3;Q14624-2;Q14624 ITIH4 Inter-alpha-trypsin inhibitor heavy chain H4;70 kDa inter-alpha-trypsin inhibitor heavy chain H4;35 kDa inter-alpha-trypsin inhibitor heavy chain H4 yes no 0 0 0 0 0 9 0 1 77.245 77.245 2 0.0016688 22512 TMT1-8 101.64 34.611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11719 1784 11600 18197 23751 23751 1 LGWVRPDLGELSK Unmodified 1468.8038 0.80381338 1258 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes yes 0 0 0 0 1 8 0 1 63.608 63.608 3 1.2788E-05 19004 TMT1-7 106.17 73.92 191.96 253.5 164.21 176.84 189.19 254.71 181 253 174 174 197 244 1 1 1 1 1 1 25915 11720 1258 11601 18198 23752 23752 1 LGYAGNTEPQFIIPSCIAIK Unmodified 2191.1347 0.13472593 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 7.67 0.471 1 2 78.658 78.658 3;4 8.8133E-10 24473 TMT1-7 92.671 70.025 531.04 670.33 530.34 442.23 492.66 718.28 501 672 548 442 514 687 5 5 5 5 5 5 270430 11721 1379 11602 18199;18200;18201 23753;23754;23755;23756;23757 23757 5 LGYANAK Unmodified 735.39154 0.39153897 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 7 0 1 40.487 40.487 2 0.01086 9771 TMT1-6 106.29 64.784 161.39 221.56 98.227 125.82 147.24 173.82 152 220 109 123 152 167 1 1 1 1 1 1 11469 11722 1077 11603 18202 23758 23758 1 LGYISVTDVLK Unmodified 1206.686 0.68598966 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 8 0 1 72.581 72.581 2 2.7979E-07 22501 TMT1-7 108.93 25.571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11723 736 11604 18203 23759 23759 1 LGYSDITIFEK Unmodified 1284.6602 0.66016884 1652 Q12882 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 7 0 1 70.706 70.706 2 0.0051432 21694 TMT1-6 59.265 48.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11724 1652 11605 18204 23760 23760 1 LHAEAIK Unmodified 780.44939 0.4493882 2706 Q9NQ50 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 0 0 0 0 0 6 0 1 35.679 35.679 3 0.00086918 8468 TMT1-5 84.244 65.464 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11725 2706 11606 18205 23761 23761 1 LHAEAISLLK Unmodified 1093.6495 0.64954457 2625 Q9H270 VPS11 Vacuolar protein sorting-associated protein 11 homolog yes yes 0 0 0 0 0 8 0 1 54.354 54.354 3 0.00077944 15332 TMT1-7 94.297 67.182 92.36 116.05 68.267 73.855 99.15 120.83 87 116 73 73 102 116 1 1 1 1 1 1 5832.8 11726 2625 11607 18206 23762 23762 1 LHCWSLTQYSK Unmodified 1421.6762 0.67617003 1140 P46976;P46976-2;P46976-3 GYG1 Glycogenin-1 yes no 0 0 0 0 0 9 0 1 51.194 51.194 3 8.1837E-07 12255 TMT1-8 116.55 92.457 115.75 121.4 99.68 63.235 99.382 128.28 109 123 102 65 102 123 1 1 1 1 1 1 9505.6 11727 1140 11608 18207 23763 23763 1 LHDAFFK Unmodified 876.44939 0.4493882 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 48.609 48.609 3 0.0045561 12990 TMT1-7 94.887 67.362 168.21 270.92 172.7 159.87 250.6 225.24 159 268 182 160 254 218 2 2 2 2 2 2 26451 11728 1704 11609 18208;18209 23764;23765 23765 2 LHDAIVEVVTCLLR Unmodified 1636.8971 0.89706184 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 86.338 86.338 3 9.2988E-06 26107 TMT1-8 95.264 59.619 46.31 95.716 70.418 58.17 54.608 98.646 44 94 73 58 58 94 2 2 2 2 2 2 21031 11729 68 11610 18210 23766;23767 23767 2 LHDALDAK Unmodified 881.46068 0.46068117 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 5 0 1 39.46 39.46 3 0.0056437 9865 TMT1-4 82.426 60.278 299.02 565.51 481.07 307.03 399 611.16 284 558 490 314 415 584 2 2 2 2 2 2 54683 11730 553 11611 18211 23768;23769 23769 2 LHDEKEETAGSYDSR Unmodified 1735.7649 0.76492127 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 2.5 0.5 1 1 33.063 33.063 4 3.8858E-11 8287 TMT1-1 127.3 121.52 200.16 275.61 208.8 213.86 229.52 310.05 189 275 218 211 239 297 2 2 2 2 2 2 21887 11731 228 11612 18212;18213 23770;23771 23770 2 LHDSLAIER Unmodified 1052.5615 0.56145784 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 0 4 0 1 38.381 38.381 3 1.8497E-06 9681 TMT1-3 158.57 124.18 146.54 157.2 125.27 117.22 111.56 127.93 138 159 130 116 116 123 1 1 1 1 1 1 36010 11732 1808 11613 18214 23772 23772 1 LHDVELHQVAER Unmodified 1444.7423 0.74227576 106 O14775-3;O14775-2;O14775 GNB5 Guanine nucleotide-binding protein subunit beta-5 yes no 0 0 0 0 0 3 0 1 36.181 36.181 4 0.0019903 9796 TMT1-2 71.558 51.131 54.221 49.905 42.035 51.742 79.514 52.097 51 51 44 51 80 51 1 1 1 1 1 1 10323 11733 106 11614 18215 23773 23773 1 LHDVNSDGFLDEQELEALFTK Unmodified 2419.1543 0.15433498 1511 P80303-2;P80303 NUCB2 Nucleobindin-2;Nesfatin-1 yes no 0 0 0 0 0 5 0 2 80.709 80.709 3;4 2.3938E-07 26011 TMT1-4 81.574 61.498 77.237 116.8 84.562 48.822 100.01 129.33 73 116 87 51 102 124 2 2 2 2 2 2 16942 11734 1511 11615 18216;18217 23774;23775 23774 2 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR Unmodified 3922.0072 0.0072238131 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 5 0 1 71.03 71.03 5 2.4921E-07 22253 TMT1-4 56.383 47.979 38.074 50.861 49.996 43.594 80.695 28.611 36 51 51 44 80 29 1 1 1 1 1 1 14117 11735 575 11616 18218 23776 23776 1 LHEEGIIYR Unmodified 1128.5928 0.59275797 903 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 0 4 0 1 39.654 39.654 3 0.00015807 10176 TMT1-3 128.38 78.793 61.498 72.483 62.341 74.756 70.064 83.281 58 73 65 73 73 80 1 1 1 1 1 1 13533 11736 903 11617 18219 23777 23777 1 LHELNQK Unmodified 880.47667 0.47666558 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 33.876 33.876 3 0.0088836 7720 TMT1-5 83.614 28.828 246.21 265.71 233.79 195.37 261.56 315.53 232 269 240 196 269 303 2 2 2 2 2 2 21163 11737 1737 11618 18220 23778;23779 23778 2 LHELQEK Unmodified 895.47633 0.47633123 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 5 0 1 36.113 36.113 3 0.0020235 8515 TMT1-4 108.09 39.301 185.84 385.79 358.68 273.12 265.17 319.7 177 380 365 274 276 307 1 1 1 1 1 1 29363 11738 431 11619 18221 23780 23780 1 LHEWTKPENLDFIEVNVSLPR Unmodified 2535.3122 0.31217302 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 1 7 0 3 68.307 68.307 3;4;5 3.4168E-24 20803 TMT1-6 137.61 125.67 314.12 564.71 467.77 337.7 379.46 468.87 298 558 479 341 393 450 4 4 4 4 4 4 210810 11739 967 11620 18222;18223;18224 23781;23782;23783;23784 23783 4 LHFFMPGFAPLTAQGSQQYR Oxidation (M) 2311.1208 0.1208072 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 1 0 0 9 0 1 64.438 64.438 3 1.4376E-12 17451 TMT1-8 89.913 75.588 23.215 36.153 35.03 36.721 28.66 30.096 22 36 36 36 30 29 1 1 1 1 1 1 25870 11740 2650 11621 18225 23785 23785 309 1 LHFFMPGFAPLTAQGSQQYR Unmodified 2295.1259 0.12589258 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 0 0 0 9 0 2 70.613 70.613 3;4 1.6176E-41 19862 TMT1-8 160.04 143.39 207.42 259.28 265.46 177.61 234.07 256.62 196 261 268 181 240 247 3 3 3 3 3 3 332450 11741 2650 11621 18226;18227 23786;23787;23788 23786 3 LHFFMPGFAPLTSR Unmodified 1619.8283 0.82825399 537;1493;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2 TUBB;TUBB4B;TUBB4A;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334 no no 0 0 0 0 0 5 4 1 1 71.687 71.687 3 3.4449E-30 20104 TMT1-8 194.06 142.85 218.54 265.02 195.51 184.41 206.22 236.1 206 266 204 182 213 227 3 3 3 2 3 3 305220 11742 537;1493;1932 11622 18228;18229 23789;23790;23791 23790 3 LHFFMPGFAPLTSR Oxidation (M) 1635.8232 0.82316861 537;1493;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2 TUBB;TUBB4B;TUBB4A;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334 no no 0 0 1 0 0 9 0 1 64.19 64.19 3 9.2065E-05 17355 TMT1-8 86.405 64.349 108.34 122.2 81.6 104.5 112.66 112.98 102 123 87 102 116 109 1 1 1 1 1 1 46979 11743 537;1493;1932 11622 18230 23792 23792 93 1 LHFGIDPDDTTITDLP Unmodified 1768.8519 0.85194536 2075 Q7L266-2;Q7L266 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes no 0 0 0 0 0 4 0 1 76.914 76.914 3 0.044477 24838 TMT1-3 37.32 26.05 15.777 29.315 28.562 21.945 21.219 22.846 15 29 29 22 22 22 1 1 1 1 1 1 6222.7 11744 2075 11623 18231 23793 23793 1 LHFHNLVK Unmodified 1006.5712 0.57123467 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 9 0 1 40.953 40.953 4 0.01923 8421 TMT1-8 49.358 28.457 108.43 122.45 66.384 105.69 97.686 120.87 102 123 73 102 102 116 1 1 1 1 1 1 8114.6 11745 81 11624 18232 23794 23794 1 LHGADLK Unmodified 752.41809 0.41808807 3075 yes yes 0 0 0 0 0 5.67 0.471 1 2 34.08 34.08 3 0.0040124 7507 TMT1-5 97.071 68.897 548.01 1097.5 561.43 502.99 766.63 883.16 519 1075 603 504 784 849 3 3 3 3 3 3 60877 + 11746 3075 11625 18233;18234;18235 23795;23796;23797 23796 3 LHGDCQDLQK Unmodified 1212.5557 0.55572054 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 35.45 35.45 3 0.0011525 8572 TMT1-3 90.142 57.196 415 554.62 473.83 373.81 532.13 574.31 392 555 486 377 544 553 4 4 4 4 4 4 62018 11747 471 11626 18236;18237 23798;23799;23800;23801 23799 4 LHGQEGLFPGNYVEK Unmodified 1686.8366 0.83657007 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 6 0 1 53.457 53.457 3 0.0045306 15531 TMT1-5 58.159 54.554 91.727 184.45 116.68 109.37 149.61 126.85 87 181 123 109 152 123 1 1 1 1 1 1 12198 11748 44 11627 18238 23802 23802 1 LHGQEGLFPGNYVEKI Unmodified 1799.9206 0.92063405 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 1 6 0 1 61.471 61.471 3 0.031824 18672 TMT1-5 45.876 35.088 108.08 106.36 139.29 69.609 99.858 105.88 102 109 138 73 102 102 1 1 1 1 1 1 10024 11749 44 11628 18239 23803 23803 1 LHHAADLEK Unmodified 1032.5352 0.53524309 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 5 0 1 31.398 31.398 3 0.027798 6605 TMT1-4 52.579 24.41 84.838 108.99 75.977 81.191 91.499 90.131 80 109 80 80 94 87 1 1 1 1 1 1 4498.6 11750 1785 11629 18240 23804 23804 1 LHHVSSLAWLDEHTLVTTSHDASVK Unmodified 2782.4038 0.40384158 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 8.33 0.471 2 1 52.074 52.074 4;5 4.8416E-39 14382 TMT1-7 151.94 137.53 668.58 1087.5 864.38 745.93 778.79 1087.5 633 1078 893 743 813 1041 8 8 8 8 8 8 68420 11751 250 11630 18241;18242;18243 23805;23806;23807;23808;23809;23810;23811;23812 23805 8 LHIIEVGTPPTGNQPFPK Unmodified 1944.0469 0.046897198 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 0 2 59.837 59.837 3;4 5.2946E-08 17561 TMT1-7 98.507 82.369 463.31 710.22 517.77 386.78 575.2 612.53 438 705 536 392 587 590 3 3 3 3 3 3 173840 11752 1540 11631 18244;18245 23813;23814;23815 23814 3 LHIPWGDNSNQQHGDK Unmodified 1844.8554 0.85540803 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 6 0 1 45.024 45.024 4 4.9188E-09 12171 TMT1-5 112.5 105.73 83.966 169.16 171.57 137.53 163.47 142.44 80 167 174 138 167 138 1 1 1 1 1 1 12796 11753 1773 11632 18246 23816 23816 1 LHISQLQHENSILK Unmodified 1658.9104 0.91040372 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 47.449 47.449 4 1.5436E-05 12498 TMT1-6 93.823 65.017 84.661 100.94 112.68 142.64 78.669 168.32 80 102 116 138 87 160 1 1 1 1 1 1 10460 11754 1762 11633 18247 23817 23817 1 LHITPEK Unmodified 836.4756 0.47560295 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 0 7 1 1 1 39.041 39.041 3 0.014572 9252 TMT1-7 74.415 18.974 545.56 852.67 639.44 563.41 619.64 970.5 516 846 664 561 649 927 2 2 2 2 2 2 51981 11755 2744 11634 18248;18249 23818;23819 23819 2 LHIVQVVCK Unmodified 1094.627 0.62703499 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 5 4 1 1 49.195 49.195 3 0.00020323 11211 TMT1-8 124.98 90.905 1301.9 1891.3 1588.2 1316.2 1638.6 2029.8 1231 1885 1633 1319 1691 1948 3 3 3 3 3 3 351270 11756 59 11635 18250;18251 23820;23821;23822 23821 3 LHIVQVVCKK Unmodified 1222.722 0.72199801 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 9 0 1 45.308 45.308 4 0.00045445 10011 TMT1-8 94.692 50.489 355.96 526.03 321.54 340.16 305.2 587.18 336 522 342 334 326 559 2 2 2 2 2 2 22137 11757 59 11636 18252 23823;23824 23824 2 LHLDYIGPCK Unmodified 1214.6118 0.61177885 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 7 0 2 52.287 52.287 3;4 0.00055203 14503 TMT1-6 98.048 61.624 393.96 581.01 380.33 423.59 448.21 575.64 372 577 403 416 466 552 3 3 3 3 3 3 291670 11758 590 11637 18253;18254 23825;23826;23827 23827 3 LHLEGQQVR Unmodified 1078.5883 0.5883413 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 5 0 1 33.913 33.913 3 0.0071039 7581 TMT1-4 71.349 33.874 61.365 79.668 78.586 64.754 85.439 75.38 58 80 80 65 87 73 1 1 1 1 1 1 16356 11759 2306 11638 18255 23828 23828 1 LHLFCEK Unmodified 945.47422 0.47422274 793 P19474;P19474-2 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes no 0 0 0 0 0 8 0 1 48.18 48.18 3 0.020662 12860 TMT1-7 66.682 45.218 77.1 147.72 81.285 80.757 97.77 151.78 73 145 87 80 102 145 1 1 1 1 1 1 16190 11760 793 11639 18256 23829 23829 1 LHLIAQELPFDR Unmodified 1450.7932 0.79324869 71 O00471 EXOC5 Exocyst complex component 5 yes yes 0 0 0 0 0 7 0 1 62.551 62.551 3 0.0024742 18479 TMT1-6 71.806 46.952 69.192 72.478 31.58 60.033 78.62 67.047 65 73 36 58 80 65 1 1 1 1 1 1 8315.7 11761 71 11640 18257 23830 23830 1 LHLSGIDANPNALFPPVEFPAPR Unmodified 2471.2961 0.29612903 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 8 0 1 75.154 75.154 3 1.7278E-06 23482 TMT1-7 73.404 55.915 61.406 72.229 77.928 89.536 106.53 98.23 58 73 80 88 109 95 2 2 2 2 2 2 11002 11762 1176 11641 18258 23831;23832 23831 2 LHNSLNEK Unmodified 953.49304 0.49304393 327 O94874;O94874-2 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 6 0 1 32.42 32.42 3 0.0055563 7180 TMT1-5 82.75 52.941 68.743 117.64 68.675 65.242 90.913 128.52 65 116 73 65 94 123 1 1 1 1 1 1 5957.2 11763 327 11642 18259 23833 23833 1 LHPFHVIR Unmodified 1017.5872 0.58721908 912 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 0 0 9 0 1 37.602 37.602 3 0.0076297 7333 TMT1-8 64.836 29.736 92.415 116.21 58.888 89.868 91.1 90.142 87 116 65 87 94 87 1 1 1 1 1 1 4376.7 11764 912 11643 18260 23834 23834 1 LHPHFSR Unmodified 892.46677 0.4667696 787 P19367-4;P19367-2;P19367;P19367-3;Q2TB90 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 0 0 0 0 0 8 0 1 26.062 26.062 3 0.031536 4503 TMT1-7 58.981 18.409 46.549 73.715 48.969 34.919 80.288 52.075 44 73 51 36 80 51 1 1 1 1 1 1 4481.7 11765 787 11644 18261 23835 23835 1 LHPVILASIVDSYER Unmodified 1710.9305 0.93047046 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 8 0 1 66.45 66.45 3 2.6007E-05 20148 TMT1-7 89.992 80.518 91.992 154.97 97.079 79.09 136.35 127.23 87 153 102 80 138 123 2 2 2 2 2 2 33040 11766 60 11645 18262 23836;23837 23837 2 LHQELGAK Unmodified 894.49232 0.49231565 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 6 0 1 34.64 34.64 3 0.011899 8035 TMT1-5 71.379 25.662 241.48 288.53 287.77 192.31 253.47 250.74 228 291 291 196 259 242 1 1 1 1 1 1 10107 11767 1018 11646 18263 23838 23838 1 LHQLDAEK Unmodified 952.49779 0.49779495 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 5 0 1 37.055 37.055 3 0.0086484 8853 TMT1-4 76.1 17.504 145.96 197.7 187.31 151.58 180.11 156.89 138 198 191 152 184 152 1 1 1 1 1 1 14729 11768 934 11647 18264 23839 23839 1 LHQLDAEKER Unmodified 1237.6415 0.64149908 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 5 0 1 32.991 32.991 3 0.00093188 7258 TMT1-4 77.288 40.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11769 934 11648 18265 23840 23840 1 LHQLLENQK Unmodified 1121.6193 0.61930707 2584 Q9BZF9-2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 0 0 0 7 0 1 43.944 43.944 3 0.040099 11104 TMT1-6 47.96 23.668 169.72 227.8 136.89 122.93 178 165.48 160 227 145 123 181 160 1 1 1 1 1 1 10901 11770 2584 11649 18266 23841 23841 1 LHQLSLK Unmodified 837.50724 0.50723743 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 9 0 1 42.848 42.848 3 0.009947 9074 TMT1-8 75.243 33.135 415.68 521.97 387.34 416.1 591.97 480.93 392 523 406 412 600 467 1 1 1 1 1 1 37883 11771 3051 11650 18267 23842 23842 1 LHQMWLSWNQK Unmodified 1469.7238 0.72378892 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 9 0 1 59.537 59.537 3 0.0059173 15597 TMT1-8 60.641 40.88 68.754 86.372 93.34 63.746 92.301 90.108 65 87 94 65 94 87 1 1 1 1 1 1 7422.2 11772 231 11651 18268 23843 23843 1 LHSFLGDDVFLR Unmodified 1417.7354 0.73539946 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 7.5 0.5 1 1 64.64 64.64 3 1.2174E-05 19360 TMT1-6 108.56 76.721 68.399 132.87 113.69 78.779 100.24 82.42 65 131 116 80 102 80 2 2 2 2 2 2 49210 11773 515 11652 18269;18270 23844;23845;23846 23845 3 LHSHDIK Unmodified 848.45045 0.45045083 2691 Q9HCN8 SDF2L1 Stromal cell-derived factor 2-like protein 1 yes yes 0 0 0 0 0 6 0 1 27.203 27.203 3 0.0010571 5197 TMT1-5 81.784 60.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11774 2691 11653 18271 23847 23847 1 LHSLLGDYYQAIK Unmodified 1519.8035 0.80347903 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 8 0 1 63.518 63.518 3 0.0054848 18978 TMT1-7 62.338 37.995 54.198 64.951 33.145 36.735 33.878 60.861 51 65 36 36 36 58 1 1 1 1 1 1 6969.4 11775 2953 11654 18272 23848 23848 1 LHSQEEDFR Unmodified 1159.5258 0.52580062 1943 Q4V328-4;Q4V328;Q4V328-2 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 2 0 1 31.981 31.981 3 0.0003471 7761 TMT1-1 113.1 83.68 38.07 50.85 50.691 28.011 35.342 29.905 36 51 51 29 36 29 1 1 1 1 1 1 4040 11776 1943 11655 18273 23849 23849 1 LHTDDELNWLDHGR Unmodified 1719.7965 0.79649617 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.88 2.03 2 1 2 1 1 1 50.826 50.826 3;4 1.1365E-22 12444 TMT 1-phospho 174.94 169.51 2452.8 2809.5 2866.5 2223.5 2173.3 3065.6 2315 2841 2908 2228 2276 2934 12 12 12 12 12 12 1141800 11777 3010 11656 18274;18275;18276;18277;18278;18279;18280;18281 23850;23851;23852;23853;23854;23855;23856;23857;23858;23859;23860;23861 23850 12 LHTGSEGQGDSR Unmodified 1242.5589 0.55889166 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 2 0 1 21.395 21.395 3 0.0012504 3755 TMT1-1 77.062 57.747 4.2491 3.9044 3.8939 4.0057 7.138 0 4 4 4 4 7 0 1 1 1 1 1 0 717.11 11778 2004 11657 18282 23862 23862 1 LHTVQPK Unmodified 821.47594 0.4759373 1308 P55036-2;P55036;A2A3N6 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 0 0 0 0 0 8 0 1 31.725 31.725 3 0.0081656 6430 TMT1-7 85.265 42.79 288.63 292.7 293.92 237.48 331.43 326.33 272 298 299 239 338 315 1 1 1 1 1 1 16570 11779 1308 11658 18283 23863 23863 1 LHTYLAGEAPTLADLAAVTALLLPFR Unmodified 2736.5214 0.52143752 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 9 0 2 102.37 102.37 3;4 8.1043E-09 32015 TMT1-8 66.711 57.124 16.095 15.849 21.623 0 0 30.914 15 15 22 0 0 29 1 1 2 0 0 2 3466.8 11780 903 11659 18284;18285 23864;23865;23866 23865 3 LHVAILER Unmodified 949.5709 0.57090032 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 46.292 46.292 3 0.0036847 12000 TMT1-6 89.698 63.096 38.115 50.974 43.083 28.608 27.729 37.585 36 51 44 29 29 36 1 1 1 1 1 1 28575 11781 1833 11660 18286 23867 23867 1 LHVDPENFR Unmodified 1125.5567 0.55670682 1497;428;34 P02042;P68871;CON__Q3SX09 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 0 5.25 2.86 1 1 1 1 43.753 43.753 3 2.1971E-09 11452 TMT1-4 169.41 121.8 5534.4 6807.9 5080.4 3675.9 1267.9 2815.4 5218 6829 5250 3662 1466 2675 8 8 8 8 8 8 1682300 + 11782 428;1497;34 11661 18287;18288;18289;18290 23868;23869;23870;23871;23872;23873;23874;23875 23870 8 LHVENEDKK Unmodified 1110.5669 0.56693715 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 1 5 0 1 32.546 32.546 4 0.00033236 7039 TMT1-4 109.66 80.937 315.71 419.11 324.14 284.41 297.1 471.22 298 419 336 283 312 450 2 2 2 2 2 2 29519 11783 1154 11662 18291 23876;23877 23876 2 LIADLGSTSITNLGFR Unmodified 1676.9097 0.90973501 2294 Q92520 FAM3C Protein FAM3C yes yes 0 0 0 0 0 9 0 1 77.946 77.946 3 6.8051E-06 22787 TMT1-8 79.652 57.596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11784 2294 11663 18292 23878 23878 1 LIAEGNKEELR Unmodified 1270.6881 0.68811492 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 1 5 0 1 42.73 42.73 3 0.0005796 11100 TMT1-4 96.946 55.241 214.31 341.22 300.65 175.23 248.87 255.13 203 339 305 181 254 246 1 1 1 1 1 1 24131 11785 2407 11664 18293 23879 23879 1 LIAHAGSLTNLAK Unmodified 1307.7561 0.75613491 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 9 0 1 51.325 51.325 3 3.4069E-10 12305 TMT1-8 121.04 74.15 122.83 177.97 124.21 139.9 187.84 221.7 116 177 131 138 193 213 1 1 1 1 1 1 11712 11786 81 11665 18294 23880 23880 1 LIAINANDPEASK Unmodified 1354.7092 0.70924429 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 56.053 56.053 2;3 7.2056E-06 16456 TMT1-5 84.365 68.111 23.345 36.514 12.902 22.884 20.92 30.317 22 36 15 22 22 29 1 1 1 1 1 1 4568.1 11787 2633 11666 18295;18296 23881;23882 23882 2 LIALLEVLSQK Unmodified 1225.7646 0.76457433 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 9 0 2 95.451 95.451 2;3 3.1261E-13 29514 TMT1-8 162.8 115.23 1470.5 1112.7 2037.4 1904.8 1694.1 4501.3 1387 1171 2030 1883 1851 4268 4 4 4 4 4 4 309970 11788 270;831;1771 11667 18297;18298 23883;23884;23885;23886;23887 23885 5 LIALLEVLSQKK Unmodified 1353.8595 0.85953735 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 9 0 1 85.399 85.399 3 1.1823E-07 25743 TMT1-8 131.17 89.575 365.41 232.11 425.99 381.84 256.98 1417.9 344 248 424 377 309 1337 2 2 2 2 2 2 47769 11789 831 11668 18299 23888;23889 23889 2 LIALSIDSVEDHLAWSK Unmodified 1895.9993 0.9992783 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 7.67 0.471 1 2 79.204 79.204 3;4 1.1239E-42 24971 TMT1-6 195.15 172.17 787.37 982.19 827.08 788.54 898.14 935.9 743 986 855 782 924 902 6 6 6 6 6 6 173180 11790 945 11669 18300;18301;18302 23890;23891;23892;23893;23894;23895 23890 6 LIANNTTVER Unmodified 1129.6091 0.60913632 383 O96019-2;O96019 ACTL6A Actin-like protein 6A yes no 0 0 0 0 0 5 0 1 39.929 39.929 2 0.0059435 10041 TMT1-4 90.142 43.251 37.913 65.523 64.662 34.698 42.348 60.62 36 65 65 36 44 58 1 1 1 1 1 1 6440.2 11791 383 11670 18303 23896 23896 1 LIAPVAEEEATVPNNK Unmodified 1693.8887 0.88866522 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 3.8 1.47 1 2 2 58.218 58.218 3;4 4.1504E-18 17570 TMT1-3 142.85 119.84 1488.6 1981.2 1692.3 1631.6 1566.1 2074.5 1406 1983 1748 1612 1637 1988 8 8 8 8 8 8 398450 11792 527 11671 18304;18305;18306;18307;18308 23897;23898;23899;23900;23901;23902;23903;23904 23899 8 LIAQACVSIFPDSGHFNVDNIR Unmodified 2472.222 0.22197781 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 8 0 1 70.335 70.335 3 3.7495E-06 21619 TMT1-7 57.806 49.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11793 1232 11672 18309 23905 23905 1 LIAQIVASDPDFYSEAILGK Unmodified 2149.1307 0.13068641 1987 Q5VVQ6-2;Q5VVQ6 YOD1 Ubiquitin thioesterase OTU1 yes no 0 0 0 0 0 7 0 1 90.661 90.661 3 2.4976E-13 29369 TMT1-6 105.77 88.695 23.293 28.813 28.231 29.203 43.151 44.607 22 29 29 29 44 43 1 1 1 1 1 1 5359.2 11794 1987 11673 18310 23906 23906 1 LIASMSSDSLR Unmodified 1178.5965 0.59652272 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 7.5 0.5 1 1 54.644 54.644 2 1.3983E-43 15372 TMT1-6 230.06 158.37 373.14 465.51 371.73 385.91 386.87 493.18 352 467 387 380 403 473 3 3 3 3 3 3 179550 11795 393 11674 18311;18312 23907;23908;23909 23907 3 LIASYCNVGDIEGASK Unmodified 1695.8138 0.81378572 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 61.502 61.502 3 5.8106E-07 18697 TMT1-5 100.23 89.373 100.03 92.245 61.348 66.068 70.207 90.739 94 94 65 65 73 87 1 1 1 1 1 1 9527 11796 1101 11675 18313 23910 23910 1 LIATFPDTLTYSAYR Unmodified 1730.8879 0.88793694 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 8 0 1 73.188 73.188 3 5.4872E-15 22799 TMT1-7 134.04 112.98 107.58 167.57 171.54 137.57 161.64 195.8 102 167 174 138 167 188 2 2 2 2 2 2 65054 11797 856 11676 18314 23911;23912 23912 2 LIATTAHEK Unmodified 982.54475 0.54474515 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 7.5 1.5 1 1 36.508 36.508 3 0.00015961 8684 TMT1-5 128.27 108.48 355.49 529.02 399.11 319.29 413.62 564.9 336 526 413 321 428 541 2 2 2 2 2 2 43025 11798 1115 11677 18315;18316 23913;23914 23913 2 LIAVADSVLTK Unmodified 1128.6754 0.67542497 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 8 0 1 72.614 72.614 3 0.0015743 22507 TMT1-7 80.763 67.07 38.055 65.918 40.451 67.581 56.008 45.306 36 65 44 65 58 44 1 1 1 1 1 1 4320.4 11799 1999 11678 18317 23915 23915 1 LIAVIGDEDTVTGFLLGGIGELNK Unmodified 2443.321 0.32100637 1911 Q16864;Q16864-2 ATP6V1F V-type proton ATPase subunit F yes no 0 0 0 0 0 8 0 2 100.51 100.51 3;4 3.991E-07 32777 TMT1-7 65.915 50.661 11.642 25.727 5.2672 15.817 14.062 26.249 11 25 7 15 15 25 1 1 1 1 1 1 1767.1 11800 1911 11679 18318;18319 23916;23917 23917 2 LIAYQEPADDSSFSLSQEVLR Unmodified 2367.1594 0.15942035 2124 Q86WV6 TMEM173 Stimulator of interferon genes protein yes yes 0 0 0 0 0 5 0 1 73.434 73.434 3 1.0443E-14 23191 TMT1-4 94.176 82.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11801 2124 11680 18320 23918 23918 1 LICCDILDVLDK Unmodified 1475.7364 0.73638702 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 6 0 1 84.135 84.135 3 4.9013E-06 27617 TMT1-5 113.65 95.284 283.12 365.14 438.06 329.58 498.43 335.43 268 368 440 334 502 328 2 2 2 2 2 2 114520 11802 1422 11681 18321 23919;23920 23920 2 LICCDILDVLDKHLIPAANTGESK Unmodified 2694.3721 0.37207244 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 1 7 0 1 78.4 78.4 4 3.0324E-13 24630 TMT1-6 99.078 88.24 107.75 160.47 149.8 125.08 80.78 160.79 102 160 153 124 88 153 2 2 2 2 2 2 25284 11803 1422 11682 18322 23921;23922 23921 2 LIDAEEEKR Unmodified 1101.5666 0.5666028 3004 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 yes yes 0 0 0 0 1 3 0 1 40.179 40.179 3 0.0076747 11389 TMT1-2 76.228 44.999 99.783 76.443 116.58 86.299 98.028 136.85 94 80 116 87 102 131 1 1 1 1 1 1 5336.7 11804 3004 11683 18323 23923 23923 1 LIDAETTAAAWPNVAAVSITGR Unmodified 2226.1644 0.16444615 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 7 0 1 77.665 77.665 3 5.7712E-09 24425 TMT1-6 81.922 55.776 68.913 63.069 86.394 80.998 68.714 114.23 65 65 87 80 73 109 2 2 2 2 2 2 8593.6 11805 1928 11684 18324 23924;23925 23925 2 LIDAGHSEAATIAEWK Unmodified 1710.8577 0.85769944 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5.5 0.5 1 1 60.627 60.627 3 4.151E-07 18164 TMT1-4 81.651 62.257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11806 651 11685 18325;18326 23926;23927 23926 2 LIDDMVAQAMK Unmodified 1233.6097 0.60972994 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 6 0 1 74.234 74.234 3 0.0048978 23677 TMT1-5 68.551 45.316 38.132 58.578 33.637 36.095 66.381 29.02 36 58 36 36 66 29 1 1 1 1 1 1 3842.6 11807 307 11686 18327 23928 23928 1 LIDDMVAQVLK Unmodified 1243.6846 0.68460945 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 7 0 2 83.725 83.725 2;3 2.6357E-08 26713 TMT1-6 157.24 97.999 214.47 380.51 241.13 219.73 221.67 378.5 203 375 254 218 234 361 2 2 2 2 2 2 77475 11808 1164 11687 18328;18329 23929;23930 23929 2 LIDFGLAR Unmodified 903.5178 0.51780212 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 8 0 2 66.282 66.282 2 0.00034507 19751 TMT1-7 152.31 0 505.93 851.25 629.65 473.73 537.11 630.67 479 842 651 477 555 606 3 3 3 3 3 3 138280 11809 1870 11688 18330;18331 23931;23932;23933 23931 3 LIDFLECGK Unmodified 1093.5478 0.54778161 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 7 0 1 74.09 74.09 2 0.0021359 23014 TMT1-6 105.52 52.049 98.947 214.43 140.12 76.533 135.91 143.23 94 210 145 80 138 138 1 1 1 1 1 1 14286 11810 764 11689 18332 23934 23934 1 LIDFLESGK Unmodified 1020.5492 0.54916182 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 6.5 0.5 1 1 74.156 74.156 2 0.00042803 23012 TMT1-6 138.06 79.423 191.35 307.95 219.47 126.07 214.47 226.27 181 305 226 131 218 218 2 2 2 2 2 2 35421 11811 2321 11690 18333;18334 23935;23936;23937 23936 3 LIDFSAQIAEGMAYIER Unmodified 1925.9557 0.95569893 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 7 0 1 90.843 90.843 3 4.0948E-06 29461 TMT1-6 89.261 73.417 47.555 88.565 47.655 44.302 50.503 53.991 45 87 51 44 52 52 3 3 3 3 3 3 6709.2 11812 550 11691 18335 23938;23939;23940 23939 3 LIDGIVLTK Unmodified 970.60628 0.60628277 562 P08240-2;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 0 0 8 0 1 67.866 67.866 2 0.0040694 20644 TMT1-7 100.25 55.868 161.42 156.86 149.45 107.46 147.28 197.27 152 160 152 109 152 189 1 1 1 1 1 1 9914.6 11813 562 11692 18336 23941 23941 1 LIDIGNSCR Unmodified 1046.5179 0.51787847 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 6 0 1 49.902 49.902 2 0.0021551 14099 TMT1-5 105.1 68.26 190.99 301.55 285.47 232.02 241.43 304.38 181 300 291 232 251 292 1 1 1 1 1 1 28235 11814 39 11693 18337 23942 23942 1 LIDLHSPSEIVK Unmodified 1349.7555 0.7554662 1359 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 0 7 1 1 1 57.87 57.87 3 4.3905E-09 17158 TMT1-5 140.63 114.19 390.62 531.24 442.8 400.17 507.75 548.36 369 531 457 399 521 528 3 3 3 3 3 3 80372 11815 1359 11694 18338;18339 23943;23944;23945 23943 3 LIDLHTNVATAVLEHIK Unmodified 1886.0625 0.062547262 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 70.159 70.159 4 0.00047737 21546 TMT1-7 65.905 46.066 99.632 131.07 95.631 142.93 117.41 136.3 94 131 102 138 123 131 1 1 1 1 1 1 15685 11816 2273 11695 18340 23946 23946 1 LIDMLSEAGLSVIETTSFVSPK Unmodified 2336.2185 0.21851514 1032 P35914;P35914-3;P35914-2 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes no 0 0 0 0 0 8 0 1 105.61 105.61 4 8.6486E-18 33650 TMT1-7 111.66 96.237 11.682 9.6489 12.168 3.9896 11.904 13.518 11 10 12 4 12 13 2 2 2 1 2 2 1544.9 11817 1032 11696 18341 23947;23948 23947 2 LIDNFEGEYDYVTNEGTVFTFK Unmodified 2600.1959 0.19586544 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 5 0 1 86.063 86.063 4 0.024624 28184 TMT1-4 34.405 20.95 62.514 72.252 72.079 50.665 41.577 61.708 59 73 73 51 44 59 2 2 2 2 2 2 2754.2 11818 1150 11697 18342 23949;23950 23950 2 LIDPQVDESR Unmodified 1170.5881 0.58806652 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 3 0 1 48.239 48.239 2 7.8973E-05 14568 TMT1-2 100.88 45.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11819 1999 11698 18343 23951 23951 1 LIDREIISHDTR Unmodified 1466.7841 0.78414057 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 1 7 0 1 40.459 40.459 4 0.04348 9779 TMT1-6 46.069 20.41 115.67 121.17 113.52 92.858 165.78 134.92 109 123 116 94 167 131 1 1 1 1 1 1 5846.5 11820 388 11699 18344 23952 23952 1 LIDSWMGK Unmodified 948.47389 0.47388839 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 0 8 0 1 66.313 66.313 2 0.026227 20018 TMT1-7 84.498 31.815 91.854 184.8 94.942 86.895 134.92 158.18 87 181 102 87 138 152 1 1 1 1 1 1 10734 11821 1125 11700 18345 23953 23953 1 LIDVNHYAK Unmodified 1071.5713 0.57129425 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 47.548 47.548 3 0.0012793 12572 TMT1-6 94.692 54.34 223.03 376.64 247.26 232.07 243.84 325.63 211 372 260 230 254 312 1 1 1 1 1 1 18521 11822 1737 11701 18346 23954 23954 1 LIEDFLAR Unmodified 975.53893 0.53893149 185 O43617;O43617-2 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 0 0 0 0 0 6 0 1 71.069 71.069 2 0.0061809 22484 TMT1-5 108.7 62.815 68.852 86.642 76.742 95.904 120.38 112.76 65 87 80 94 123 109 1 1 1 1 1 1 22911 11823 185 11702 18347 23955 23955 1 LIEDKPR Unmodified 869.49707 0.49706667 1687 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 1 5 0 1 37.573 37.573 3 0.0068627 9088 TMT1-4 97.798 39.512 217.28 322.86 177.29 199.9 199.9 246.94 205 320 191 196 208 237 1 1 1 1 1 1 12594 11824 1687 11703 18348 23956 23956 1 LIEDSTLSK Unmodified 1004.539 0.53899107 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 5 0 1 53.19 53.19 2 0.0035167 15241 TMT1-4 101.46 47.685 92.275 84.52 109.24 70.988 121.78 105.26 87 87 109 73 123 102 1 1 1 1 1 1 7790.2 11825 2940 11704 18349 23957 23957 1 LIEDTEDWRPR Unmodified 1428.6997 0.69974224 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 1 4 0 1 52.299 52.299 3 0.012763 15224 TMT1-3 64.918 39.576 84.63 123.52 98.625 87.573 87.211 206.45 80 123 102 87 94 196 1 1 1 1 1 1 16043 11826 2411 11705 18350 23958 23958 1 LIEECISQIVLHK Unmodified 1580.8596 0.8596137 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 72.246 72.246 3 2.5072E-13 22254 TMT1-6 159.44 130.47 240.03 399.81 256.16 266.27 315.05 338.53 227 395 271 263 324 326 2 2 2 2 2 2 63178 11827 228 11706 18351 23959;23960 23959 2 LIEEGVDVPEGLAVDWIGR Unmodified 2066.0684 0.068420501 414 P01133-2;P01133-3;P01133 EGF Pro-epidermal growth factor;Epidermal growth factor yes no 0 0 0 0 0 5 0 1 83.991 83.991 3 0.00039993 27290 TMT1-4 60.528 39.575 31.983 36.077 4.1993 23.546 13.267 39.063 30 36 7 22 15 37 1 1 1 1 1 1 2970.3 11828 414 11707 18352 23961 23961 1 LIEEVHAVVTVR Unmodified 1363.7823 0.78234966 1289 P53680-2;P53680 AP2S1 AP-2 complex subunit sigma yes no 0 0 0 0 0 6 0 1 56.855 56.855 3 0.00037716 16868 TMT1-5 87.719 56.534 30.586 66.549 32.803 44.946 63.315 76.011 29 65 36 44 65 73 1 1 1 1 1 1 6055.3 11829 1289 11708 18353 23962 23962 1 LIEEVMIGEDK Unmodified 1274.6428 0.64280421 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 4 0 1 70.088 70.088 3 0.0024837 22141 TMT1-3 76.655 45.827 84.975 101.81 59.071 106 104.45 136.67 80 102 65 102 109 131 2 2 2 2 2 2 10369 11830 1504 11709 18354 23963;23964 23963 2 LIEFLSK Unmodified 848.50076 0.50075507 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 8.5 0.5 1 1 70.585 70.585 2 0.0075382 21709 TMT1-7 126.67 61.891 308.39 354.32 346.86 226.98 315.03 239.39 291 358 351 232 319 233 2 2 2 2 2 2 52579 11831 2985 11710 18355;18356 23965;23966 23965 2 LIEGLSHEVIVSAACGR Unmodified 1809.9407 0.94071757 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 6 0 1 62.755 62.755 3 1.4644E-05 19161 TMT1-5 82.259 63.184 46.464 73.478 63.439 50.465 79.573 52.095 44 73 65 51 80 51 1 1 1 1 1 1 12106 11832 2822 11711 18357 23967 23967 1 LIEGVHPGSLVEK Unmodified 1376.7664 0.76636524 1724 Q13586 STIM1 Stromal interaction molecule 1 yes yes 0 0 0 0 0 6 0 1 52.867 52.867 3 5.1334E-06 15315 TMT1-5 109.22 77.993 153.32 222.67 191.57 167.32 201.9 202.11 145 222 197 167 207 195 1 1 1 1 1 1 25060 11833 1724 11712 18358 23968 23968 1 LIEGVLDFK Unmodified 1032.5855 0.58554733 1108 P43155-3;P43155-2;P43155 CRAT Carnitine O-acetyltransferase yes no 0 0 0 0 0 7 0 1 74.652 74.652 2 0.00075195 23245 TMT1-6 88.37 36.582 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11834 1108 11713 18359 23969 23969 1 LIEHGVNTAEDLVR Unmodified 1564.8209 0.82092001 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 4 0 1 53.404 53.404 3 2.4449E-22 15588 TMT1-3 171.51 139.68 216.19 251.66 240.26 242.59 229.78 264.21 204 254 247 239 239 254 2 2 2 2 2 2 71878 11835 2135 11714 18360 23970;23971 23970 2 LIEIENFK Unmodified 1004.5542 0.5542472 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 7 0 1 66.27 66.27 2 0.0085835 19973 TMT1-6 101.64 9.2042 46.726 58.017 32.55 60.286 62.096 90.97 44 58 36 58 65 87 1 1 1 1 1 1 4865.7 11836 1790 11715 18361 23972 23972 1 LIEILSEK Unmodified 943.559 0.55899823 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 6 0 1 69.679 69.679 2 0.0044013 21892 TMT1-5 113.26 29.503 61.185 118.02 76.283 64.814 89.577 168 58 116 80 65 94 160 1 1 1 1 1 1 8023.8 11837 2828 11716 18362 23973 23973 1 LIELNYLGTVSLTK Unmodified 1562.892 0.89195969 2987 Q9Y394-2;Q9Y394 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 0 0 0 0 0 9 0 1 79.016 79.016 2 3.2896E-09 23199 TMT1-8 110.38 76.513 23.211 36.142 35.727 21.093 43.78 37.127 22 36 36 22 44 36 1 1 1 1 1 1 4771.9 11838 2987 11717 18363 23974 23974 1 LIELQAGK Unmodified 870.51747 0.51746776 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 7 0 1 54.96 54.96 2 0.0041618 15448 TMT1-6 127.02 9.8612 324.3 513.69 423.88 273.18 578.41 457.86 307 510 433 283 580 445 2 2 2 2 2 2 48807 11839 700 11718 18364 23975;23976 23975 2 LIELQAGKK Unmodified 998.61243 0.61243078 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 1 8 0 1 48.704 48.704 3 0.0046554 13052 TMT1-7 82.261 14.363 656.42 808.27 620.68 594.51 652.42 1010.1 619 811 646 589 683 965 1 1 1 1 1 1 72487 11840 700 11719 18365 23977 23977 1 LIENVDPEK Unmodified 1055.5499 0.5498901 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 4 0 1 52.569 52.569 3 0.0071039 15248 TMT1-3 71.349 47.006 92.006 131.26 114.75 54.388 115.22 105.44 87 131 116 58 116 102 1 1 1 1 1 1 11747 11841 2490 11720 18366 23978 23978 1 LIESAEELIR Unmodified 1171.6449 0.64485312 1685 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 yes yes 0 0 0 0 0 4 0 1 69.957 69.957 2 0.00019683 22126 TMT1-3 129.38 79.965 84.78 101.27 92.362 63.809 92.042 97.578 80 102 94 65 94 94 1 1 1 1 1 1 16367 11842 1685 11721 18367 23979 23979 1 LIEVDDERK Unmodified 1115.5823 0.58225287 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 1 4 0 1 43.831 43.831 3 0.0013369 11842 TMT1-3 99.815 41.956 222.23 373.13 205.63 248.52 198.41 286.42 210 368 222 242 210 274 1 1 1 1 1 1 12432 11843 1442 11722 18368 23980 23980 1 LIEVTETICKR Unmodified 1360.7384 0.73843593 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 1 7 0 1 54.112 54.112 3 0.00038666 15159 TMT1-6 99.276 60.254 107.6 182.74 154.78 153.46 183.32 213.3 102 181 160 152 189 205 1 1 1 1 1 1 11754 11844 2528 11723 18369 23981 23981 1 LIEYYQQLAQK Unmodified 1395.7398 0.73981614 2888 Q9UJW0-3;Q9UJW0;Q9UJW0-2 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 0 8 0 1 68.787 68.787 3 1.305E-05 21003 TMT1-7 114.89 96.269 115.95 99.299 84.337 73.065 90.26 137.07 109 102 87 73 94 131 1 1 1 1 1 1 12367 11845 2888 11724 18370 23982 23982 1 LIFAGKQLEDGR Unmodified 1345.7354 0.73539946 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 1 8.5 0.5 1 1 54.561 54.561 3 2.8086E-05 15415 TMT1-7 106.11 68.968 231.36 171.16 284.98 195.47 326.75 336.06 218 180 282 200 332 324 1 1 1 1 1 1 23443 11846 1463 11725 18371;18372 23983;23984 23983 2 LIFFYEWSVK Unmodified 1330.6962 0.69616041 354 O95433-2;O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 0 9 0 1 86.657 86.657 3 0.0068789 26130 TMT1-8 61.78 31.97 38.33 35.382 20.159 29.837 35.002 37.377 36 36 22 29 36 36 1 1 1 1 1 1 3269.4 11847 354 11726 18373 23985 23985 1 LIFPYVELDLHSYDLGIENR Unmodified 2405.2267 0.22671206 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 7 0 2 84.425 84.425 3;4 8.3896E-18 27040 TMT1-6 121.34 118.34 30.695 51.741 27.143 21.896 28.294 30.107 29 51 29 22 29 29 1 1 1 1 1 1 10386 11848 307 11727 18374;18375 23986;23987 23986 2 LIFQMPQNK Unmodified 1117.5954 0.59540051 1723;1139 Q13576;Q13576-3;Q13576-2;Q86VI3;P46940 IQGAP2;IQGAP3;IQGAP1 Ras GTPase-activating-like protein IQGAP2;Ras GTPase-activating-like protein IQGAP3;Ras GTPase-activating-like protein IQGAP1 no no 0 0 0 0 0 9 0 1 63.17 63.17 3 0.0023788 16963 TMT1-8 84.498 59.061 191.88 240.35 187.79 199.68 178.3 297.66 181 241 196 196 189 284 1 1 1 1 1 1 24436 11849 1723;1139 11728 18376 23988 23988 1 LIFQVLDAVK Unmodified 1144.6856 0.68559572 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 0 9 0 2 85.397 85.397 2;3 0.0012544 25704 TMT1-8 105.86 53.147 154.52 194.88 193.87 128.71 154.97 188.52 146 196 196 131 160 181 2 2 2 2 2 2 51311 11850 1746 11729 18377;18378 23989;23990 23990 2 LIFSTITSK Unmodified 1008.5855 0.58554733 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 9 0 1 65.946 65.946 2 2.4573E-06 18043 TMT1-8 162.49 87.305 169.75 210.63 145.51 122.56 170.7 195.54 160 211 152 123 175 188 2 2 2 2 2 2 22665 11851 1118 11730 18379 23991;23992 23991 2 LIFYDLR Unmodified 938.52255 0.52255314 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 8 0 1 67.85 67.85 2 0.0079517 20687 TMT1-7 121.68 62.043 107.79 160.6 141.95 106.85 203.37 148.77 102 160 145 109 204 145 2 2 2 2 2 2 21766 11852 1820 11731 18380 23993;23994 23994 2 LIGDAAK Unmodified 686.39629 0.39629 641;640;618 P11021;P11142;P11142-2;P54652;P0DMV8;P0DMV9;P0DMV8-2 HSPA5;HSPA8;HSPA2;HSPA1A;HSPA1B 78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 6 0 1 44.384 44.384 2 0.0098358 11937 TMT1-5 110.63 32.018 7118.4 10115 8540.7 6860.8 9369.2 9701.9 6729 10092 8770 6904 9577 9352 1 1 1 1 1 1 758580 11853 640;641;618 11732 18381 23995 23995 1 LIGEVSSGSGETFSYPDFLR Unmodified 2160.0375 0.037514303 1306 P55008;P55008-2;P55008-3 AIF1 Allograft inflammatory factor 1 yes no 0 0 0 0 0 6 0 1 77.414 77.414 3 1.3179E-35 24991 TMT1-5 155.92 137.83 68.895 95.398 61.994 50.852 63.593 60.013 65 95 65 51 65 58 2 2 2 2 2 2 34148 11854 1306 11733 18382 23996;23997 23997 2 LIGEYGLR Unmodified 919.51272 0.51271674 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 0 6 0 1 54.044 54.044 2 0.010493 15699 TMT1-5 99.139 45.976 160.05 337.62 225.52 148.26 235.89 242.71 152 331 234 152 240 234 1 1 1 1 1 1 65769 11855 1135 11734 18383 23998 23998 1 LIGFAQLSIS Unmodified 1047.5964 0.59644637 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 9 0 1 85.173 85.173 2 0.020102 25587 TMT1-8 70.525 35.324 38.082 58.437 42.298 36.185 34.16 53.391 36 58 44 36 36 51 1 1 1 1 1 1 9056.7 11856 367 11735 18384 23999 23999 1 LIGLSATLPNYEDVATFLR Unmodified 2092.1205 0.12045607 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 9 0 1 88.833 88.833 3 3.1891E-21 27003 TMT1-8 129.32 103.5 30.631 35.375 51.66 27.948 35.602 22.436 29 36 51 29 36 22 1 1 1 1 1 1 8625.4 11857 293 11736 18385 24000 24000 1 LIGNLCYK Unmodified 979.51609 0.51608756 2834 Q9UBB4-2;Q9UBB4 ATXN10 Ataxin-10 yes no 0 0 0 0 0 9 0 1 57.908 57.908 2 0.00089936 14898 TMT1-8 120.65 59.963 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11858 2834 11737 18386 24001 24001 1 LIGNMALLPIR Oxidation (M) 1225.7217 0.72166366 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 1 0 0 9 0 1 65.675 65.675 2 0.00088257 17962 TMT1-8 93.467 65.293 92.097 122.88 106.58 79.1 105.69 136.63 87 123 109 80 109 131 1 1 1 1 1 1 16773 11859 130 11738 18387 24002 24002 20 1 LIGNMALLPIR Unmodified 1209.7267 0.72674903 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 9 0 2 74.038 74.038 2;3 2.8812E-06 21213 TMT1-8 109.66 47.201 123.32 113.49 96.881 111.57 95.547 175.3 116 116 101 109 102 167 2 2 2 2 2 2 144440 11860 130 11738 18388;18389 24003;24004 24003 2 LIGPNCPGVINPGECK Unmodified 1723.8386 0.83856068 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 7 0 1 57.841 57.841 3 2.8997E-05 16594 TMT1-6 82.259 63.5 84.914 101.64 69.555 65.21 89.852 159.47 80 102 73 65 94 152 1 1 1 1 1 1 23528 11861 1285 11739 18390 24005 24005 1 LIGQIVSSITASLR Unmodified 1456.8613 0.86132826 2068;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;Q71U36-2;Q71U36 TUBA3E;TUBA1A Tubulin alpha-3E chain;Tubulin alpha-1A chain no no 0 0 0 0 0 9 0 1 91.872 91.872 3 2.5854E-17 28102 TMT1-8 151.74 116.77 69.98 102.91 53.639 82.411 97.4 160.32 66 102 59 80 102 153 2 2 2 2 2 2 45008 11862 622;2068 11740 18391 24006;24007 24007 2 LIGWGQIR Unmodified 941.54469 0.54468557 1077 P41091;Q2VIR3 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 9 0 1 60.647 60.647 2 3.7733E-17 15980 TMT1-8 168.82 104.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11863 1077 11741 18392 24008 24008 1 LIHFSGVALGEACTIVLR Unmodified 1955.0663 0.066252432 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 9 0 1 70.615 70.615 3 8.0711E-08 19874 TMT1-8 81.157 44.463 106.51 175.22 163.79 131.49 102.73 152.7 101 174 167 131 109 146 2 2 2 2 2 2 19751 11864 1504 11742 18393 24009;24010 24009 2 LIHGSGKEETSK Unmodified 1284.6674 0.66737948 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 1 8 0 1 32.446 32.446 4 0.0038707 6714 TMT1-7 68.44 44.59 92.224 115.68 91.425 64.6 52.957 138.13 87 116 94 65 58 131 1 1 1 1 1 1 4272 11865 2737 11743 18394 24011 24011 1 LIHLFCAVLAGGK Unmodified 1397.7853 0.78532654 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 76.347 76.347 3 0.00027286 22171 TMT1-8 79.82 54.434 77.746 48.065 57.202 51.143 63.323 67.483 73 51 58 51 65 65 1 1 1 1 1 1 3962.7 11866 2061 11744 18395 24012 24012 1 LIHPDEDISLEER Unmodified 1564.7733 0.77330111 189 O43670-3;O43670-2;O43670;O43670-4 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 0 0 0 0 0 2.5 0.5 1 1 50.911 50.911 3 7.5363E-05 15522 TMT1-2 95.428 83.845 77.189 117.75 91.761 80.25 91.527 121.04 73 117 95 80 95 116 2 2 2 2 2 2 30974 11867 189 11745 18396;18397 24013;24014 24014 2 LIHQLLTDIGR Unmodified 1277.7456 0.74557022 1096 P42345 MTOR Serine/threonine-protein kinase mTOR yes yes 0 0 0 0 0 9 0 1 65.556 65.556 3 0.01298 17924 TMT1-8 54.286 29.942 23.244 28.678 36.504 13.695 27.865 53.571 22 29 36 15 29 51 1 1 1 1 1 1 4527.6 11868 1096 11746 18398 24015 24015 1 LIHQTNLILQTFK Unmodified 1567.9086 0.9086128 2541 Q9BUL8 PDCD10 Programmed cell death protein 10 yes yes 0 0 0 0 0 9 0 1 64.978 64.978 3 1.4623E-11 17654 TMT1-8 123.02 67.618 115.85 82.826 115.43 101.61 159.41 95.655 109 87 116 102 160 94 1 1 1 1 1 1 17564 11869 2541 11747 18399 24016 24016 1 LIHTLDDR Unmodified 981.52434 0.52434406 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 0 5 0 1 40.299 40.299 3 0.0010178 10203 TMT1-4 119.27 69.857 38.006 65.782 48.743 51.653 63.006 76.02 36 65 51 51 65 73 1 1 1 1 1 1 10743 11870 2568 11748 18400 24017 24017 1 LIIAGTSAYAR Unmodified 1134.6397 0.63970816 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 53.01 53.01 2 5.4801E-09 12962 TMT1-8 146.88 105.86 61.255 103.11 77.181 64.74 90.643 137.06 58 102 80 65 94 131 1 1 1 1 1 1 13547 11871 1006 11749 18401 24018 24018 1 LIIDVIR Unmodified 840.54329 0.54328858 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7 0 1 65.403 65.403 2 0.01083 19566 TMT1-6 106.42 43.437 61.281 86.991 86.418 49.115 78.572 83.038 58 87 87 51 80 80 1 1 1 1 1 1 12062 11872 1723 11750 18402 24019 24019 1 LIIGFISK Unmodified 889.56369 0.56368968 1092 P42226;P42226-3;P42226-2 STAT6 Signal transducer and activator of transcription 6 yes no 0 0 0 0 0 9 0 1 72.936 72.936 2 0.0071594 20860 TMT1-8 96.492 34.494 46.755 50.542 34.049 36.692 33.331 76.867 44 51 36 36 36 73 1 1 1 1 1 1 3990.8 11873 1092 11751 18403 24020 24020 1 LIINSLYK Unmodified 962.58007 0.58006802 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 9 0 1 63.846 63.846 2 0.00027711 17284 TMT1-8 157.86 77.398 825.84 1328.3 1100.3 839.82 1083 1301.6 782 1318 1129 847 1115 1250 2 2 2 2 2 2 172480 11874 708 11752 18404 24021;24022 24022 2 LIIQAGIK Unmodified 854.55894 0.55893865 992 P32321;P32321-2 DCTD Deoxycytidylate deaminase yes no 0 0 0 0 0 9 0 1 58.32 58.32 2 0.0072021 15053 TMT1-8 115.46 47.061 123.03 144 118.96 109.23 149.62 126.85 116 145 123 109 152 123 1 1 1 1 1 1 11352 11875 992 11753 18405 24023 24023 1 LIIWDSYTTNK Unmodified 1352.6976 0.69761697 1454;1453;2674 P62879;Q9HAV0;P62873;P62873-2 GNB2;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 0 8.67 0.471 1 2 69.034 69.034 2;3 5.62E-23 19328 TMT1-8 191.4 131.49 376.42 607.03 421.56 339.3 440.86 506.56 356 601 439 341 453 487 4 4 4 4 4 4 163800 11876 1454;2674;1453 11754 18406;18407;18408 24024;24025;24026;24027 24026 4 LIKEELQSQVELLNSFEK Unmodified 2146.1522 0.15215013 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 7 0 1 78.658 78.658 4 4.8436E-10 24836 TMT1-6 105.28 84.077 61.548 48.879 73.845 42.616 57.156 45.273 58 51 73 44 58 44 1 1 1 1 1 1 12286 11877 934 11755 18409 24028 24028 1 LILADALCYAHTFNPK Unmodified 1845.9447 0.94474031 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 9 0 1 74.232 74.232 3 3.8189E-17 21275 TMT1-8 130.98 96.483 85.019 109.49 45.216 66.641 90.849 128.53 80 109 51 65 94 123 1 1 1 1 1 1 20763 11878 932 11756 18410 24029 24029 1 LILDSAR Unmodified 786.45995 0.45995289 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 6.5 0.5 1 1 47.901 47.901 2 0.00084273 13175 TMT1-5 113.1 29.301 146.89 150.63 71.41 120.59 103.01 159.09 138 152 80 116 109 152 1 1 1 1 1 1 8733.1 11879 937 11757 18411;18412 24030;24031 24030 2 LILDVFCGSQMHFVR Unmodified 1820.9066 0.90658067 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 9 0 1 74.926 74.926 3 5.668E-19 21607 TMT1-8 123.76 92.869 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11880 655 11758 18413 24032 24032 1 LILEQMQK Unmodified 1001.558 0.55795237 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 8 0 1 59.341 59.341 2 0.0010405 17274 TMT1-7 145.63 82.154 130.03 204.65 153.7 145.66 194.72 226.83 123 203 160 145 200 218 1 1 1 1 1 1 20273 11881 986 11759 18414 24033 24033 1 LILEVHQFSR Unmodified 1240.6928 0.69280637 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 53.507 53.507 3 1.5965E-05 15019 TMT1-7 141.29 93.732 92.084 107.73 121.61 102.12 112.51 120.45 87 109 123 102 116 116 1 1 1 1 1 1 24646 11882 1546 11760 18415 24034 24034 1 LILEYVK Unmodified 876.53206 0.5320552 2081 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 0 8 0 1 66.184 66.184 2 0.0243 19939 TMT1-7 94.262 27.207 77.404 93.522 76.279 96.065 113.3 105.5 73 94 80 94 116 102 1 1 1 1 1 1 18724 11883 2081 11761 18416 24035 24035 1 LILGLMMPPAHYDAK Unmodified 1668.8732 0.87315527 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 71.55 71.55 3 1.2135E-05 20241 TMT1-8 84.566 61.147 46.376 80.789 72.006 42.637 61.845 121.89 44 80 73 44 65 116 1 1 1 1 1 1 25331 11884 555 11762 18417 24036 24036 1 LILIGETIK Unmodified 998.63758 0.6375829 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4;P35354 PTGS1;PTGS2 Prostaglandin G/H synthase 1;Prostaglandin G/H synthase 2 yes no 0 0 0 0 0 8 0 1 69.685 69.685 2 1.1634E-09 21378 TMT1-7 178.83 154.68 169.37 162.06 251.57 114.57 259.28 185.55 160 167 247 123 259 181 1 1 1 1 1 1 23215 11885 855 11763 18418 24037 24037 1 LILPELGPVFK Unmodified 1224.7482 0.74819598 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 0 9 0 1 81.497 81.497 3 0.0015429 24122 TMT1-8 72.006 48.155 30.479 58.695 57.517 35.104 43.392 29.676 29 58 58 36 44 29 1 1 1 1 1 1 5478.8 11886 2029 11764 18419 24038 24038 1 LILPHVDIQLK Unmodified 1287.7915 0.79145778 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 8.67 0.471 1 2 67.197 67.197 2;3 4.2027E-08 18543 TMT1-8 140.16 78.202 238.04 349.68 271.91 296.37 291.9 393.55 225 348 284 291 305 377 3 3 3 3 3 3 194760 11887 1164 11765 18420;18421;18422 24039;24040;24041 24040 3 LILPVGPAGGNQMLEQYDK Unmodified 2042.0507 0.050661947 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 7 0 1 73.765 73.765 3 2.4132E-17 22886 TMT1-6 118.31 102 68.664 93.677 102.24 48.329 70.216 114.19 65 94 102 51 73 109 1 1 1 1 1 1 17855 11888 840 11766 18423 24042 24042 1 LINLVGESLR Unmodified 1112.6554 0.65535823 1128 P46379-4;P46379-5;P46379-2;P46379;P46379-3 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 0 8 0 2 67.47 67.47 2 2.5067E-06 20436 TMT1-7 127.94 62.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11889 1128 11767 18424;18425 24043;24044 24043 2 LINNAIK Unmodified 784.48069 0.48068833 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 8 0 1 48.344 48.344 2 0.0022383 12950 TMT1-7 90.986 27.333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11890 335;369 11768 18426 24045 24045 1 LIPDDVMTR Unmodified 1058.543 0.54303059 2881 Q9UIJ7 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 0 0 0 0 0 5 0 1 57.16 57.16 2 0.0018679 16782 TMT1-4 111.39 71.189 77.137 140.27 81.385 88.541 90.355 113.62 73 138 87 87 94 109 1 1 1 1 1 1 13143 11891 2881 11769 18427 24046 24046 1 LIPDGCGVK Unmodified 957.49535 0.49535211 912 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 0 6 0 1 51.246 51.246 3 0.023272 14657 TMT1-5 54.608 42.76 108.47 114.99 67.242 96.486 119.55 136.23 102 116 73 94 123 131 1 1 1 1 1 1 9996.8 11892 912 11770 18428 24047 24047 1 LIPDSIGK Unmodified 841.49092 0.49091866 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 7 0 1 57.395 57.395 2 0.00492 16459 TMT1-6 121.62 55.816 244.31 456.85 391.02 319.23 558.69 422.18 232 451 401 323 562 411 1 1 1 1 1 1 43272 11893 1386 11771 18429 24048 24048 1 LIPDSIGKDIEK Unmodified 1326.7395 0.73948179 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 1 6 0 1 59.12 59.12 3 0.019585 17733 TMT1-5 58.071 33.78 376.73 592.78 382.17 392.76 338.1 655.54 356 587 404 386 362 624 1 1 1 1 1 1 45308 11894 1386 11772 18430 24049 24049 1 LIPEMDQIFTEVEMTTLEK Unmodified 2266.1113 0.11127287 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 6 0 2 102.19 102.19 3;4 1.0818E-09 33749 TMT1-5 95.666 78.089 23.312 31.026 23.09 20.188 15.735 32.597 22 31 24 20 17 31 3 3 3 3 3 3 3150 11895 3017 11773 18431;18432 24050;24051;24052 24051 3 LIPPEETPAPETDINLEVSFAEQALNQK Unmodified 3092.5554 0.555376 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 5 0 1 88.644 88.644 4 0.00045294 29204 TMT1-4 46.145 40.425 31.883 36.878 20.351 62.216 56.254 45.299 30 37 22 59 58 44 2 2 1 2 2 2 4823.9 11896 2172 11774 18433 24053;24054 24054 2 LIQELAK Unmodified 813.496 0.49600404 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 7 0 1 56.607 56.607 2 0.0077529 16169 TMT1-6 124.08 18.132 191.86 205.75 220.67 163.86 293.56 309.29 181 209 223 167 298 298 1 1 1 1 1 1 27712 11897 193 11775 18434 24055 24055 1 LIQEQHPEEELIK Unmodified 1604.841 0.84098675 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3.5 0.5 1 1 51.728 51.728 3 1.6786E-09 14922 TMT1-3 128.95 60.141 214.87 311.47 232.1 248.08 370.54 422.22 203 310 243 246 379 406 2 2 2 2 2 2 36623 11898 1737 11776 18435;18436 24056;24057 24057 2 LIQESPTLSK Unmodified 1114.6234 0.6233894 2023 Q6P1A2;Q6P1A2-2 LPCAT3 Lysophospholipid acyltransferase 5 yes no 0 0 0 0 0 7 0 1 52.587 52.587 2 0.00073867 14544 TMT1-6 80.979 47.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11899 2023 11777 18437 24058 24058 1 LIQFHFHWGSLDGQGSEHTVDK Unmodified 2537.2088 0.20877058 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 8 0 1 59.705 59.705 5 1.6058E-06 17442 TMT1-7 73.405 60.368 122.77 150.8 158.31 115.52 97.491 113.41 116 152 160 116 102 109 1 1 1 1 1 1 15616 11900 406 11778 18438 24059 24059 1 LIQHANVQAHSSLIR Unmodified 1685.9325 0.93253614 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 8.5 0.5 1 1 37.68 37.68 3;4 8.6517E-08 8634 TMT1-7 109.55 82.123 84.684 92.366 116.02 79.083 76.681 98.016 80 94 116 80 80 94 2 2 2 2 2 2 37617 11901 1878 11779 18439;18440 24060;24061 24060 2 LIQLMEEIMAEK Unmodified 1446.7462 0.74622343 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 7 0 1 97.861 97.861 3 0.0053496 31732 TMT1-6 64.65 39.859 7.3634 22.82 5.4637 15.803 14.173 23.048 7 22 7 15 15 22 1 1 1 1 1 1 2270.3 11902 2321 11780 18441 24062 24062 1 LIQLMEEIMAEKENK Unmodified 1817.9267 0.92670699 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 1 8 0 1 87.192 87.192 3 0.001833 28104 TMT1-7 68.044 36.244 23.193 59.834 18.771 29.777 42.59 29.699 22 58 22 29 43 29 1 1 1 1 1 1 2772.3 11903 2321 11781 18442 24063 24063 1 LIQQFLTLRPDQQLHIFNTLR Unmodified 2593.4493 0.44927563 364 O95674 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 0 0 0 0 1 9 0 1 78.75 78.75 4 4.4131E-15 23109 TMT1-8 102.24 59.059 77.276 109.36 84.32 64.275 92.774 106.08 73 109 87 65 95 102 2 2 2 2 2 2 10961 11904 364 11782 18443 24064;24065 24065 2 LIQQVAQEIWVCEK Unmodified 1742.9025 0.90254115 2856 Q9UG63;Q9UG63-2 ABCF2 ATP-binding cassette sub-family F member 2 yes no 0 0 0 0 0 7 0 1 79.822 79.822 3 0.0048018 25194 TMT1-6 60.55 39.457 46.95 27.34 20.929 22.405 20.942 30.316 44 29 22 22 22 29 1 1 1 1 1 1 5186.4 11905 2856 11783 18444 24066 24066 1 LIQSHPESAEDLQEK Unmodified 1722.8424 0.84244331 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 2 44.289 44.289 3;4 7.42E-11 12017 TMT1-3 124.43 90.048 230.84 280.9 277.81 232.96 273.89 363.15 218 283 283 233 284 348 2 2 2 2 2 2 34900 11906 1737 11784 18445;18446 24067;24068 24067 2 LIQVVFGHWDVVTCLAR Unmodified 2012.0666 0.066586783 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 82.643 82.643 3 8.4842E-07 24608 TMT1-8 71.558 48.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11907 1229 11785 18447 24069 24069 1 LISEILSESVVPDVR Unmodified 1654.9142 0.91415169 2346 Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 0 5.5 0.5 1 1 83.65 83.65 3 0.0034043 27380 TMT1-5 60.968 45.077 46.607 72.798 39.92 69.253 26.91 68.522 44 72 44 66 29 65 2 2 2 2 1 2 6344.6 11908 2346 11786 18448;18449 24070;24071 24071 2 LISLTDENALSGNEELTVK Unmodified 2045.0528 0.052830017 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 5 0 2 71.99 71.99 3;4 7.4386E-45 22668 TMT1-4 183.77 166.28 904.93 1145.7 946.76 807.56 960.55 1011.9 854 1149 976 807 987 975 9 9 9 9 9 9 95113 11909 708 11787 18450;18451 24072;24073;24074;24075;24076;24077;24078;24079;24080 24073 9 LISNYGTHFIR Unmodified 1319.6986 0.69862003 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 9 0 1 49.885 49.885 3 3.226E-07 11721 TMT1-8 124.39 89.433 191.46 363.29 154.56 245.64 164.66 237.28 181 356 174 236 176 227 1 1 1 1 1 1 33441 11910 699 11788 18452 24081 24081 1 LISQIVSSITASLR Unmodified 1486.8719 0.87189295 1491;1492;2510;2783 P68363;P68363-2;Q9H853;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA1B;TUBA4B;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 9 0 5 90.241 90.241 2;3 4.2964E-24 29110 TMT1-8 184.11 118.8 974.15 1182.6 1004.4 815.29 947.82 1220.2 919 1189 1032 817 982 1170 8 8 8 8 8 8 1262400 11911 1491;2510;1492;2783 11789 18453;18454;18455;18456;18457 24082;24083;24084;24085;24086;24087;24088;24089;24090 24084 9 LISSVDPQFLK Unmodified 1245.6969 0.69688869 2550 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 0 8 0 1 68.405 68.405 2 0.0086517 20861 TMT1-7 79.693 25.085 77.391 93.488 78.352 49.591 78.807 75.569 73 94 80 51 80 73 1 1 1 1 1 1 10088 11912 2550 11790 18458 24091 24091 1 LISVEDLWK Unmodified 1101.607 0.60701105 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 7.5 0.5 1 1 76.508 76.508 2 0.00026318 23977 TMT1-6 143.01 74.589 388.11 544.4 493.53 312.77 344.61 481.59 367 544 501 319 359 461 4 4 4 4 4 4 42199 11913 1724 11791 18459;18460 24092;24093;24094;24095 24093 4 LISVEPRPEQPEPDFR Unmodified 1907.9741 0.97412619 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 1 4 0 1 53.145 53.145 3 1.9083E-08 15495 TMT1-3 109.35 89.774 84.6 139.62 90.037 64.372 69.479 114.21 80 138 94 65 73 109 1 1 1 1 1 1 20973 11914 20 11792 18461 24096 24096 1 LISWYDNEFGYSNR Unmodified 1762.7951 0.79509919 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 6.38 2.18 1 2 2 3 72.553 72.553 2;3 1.0561E-53 22511 TMT1-6 220.34 207.82 1419.2 1938.4 1668.7 1472.4 1738.6 1985.4 1341 1938 1717 1468 1792 1909 12 12 12 12 12 12 1126300 11915 472 11793 18462;18463;18464;18465;18466;18467;18468;18469 24097;24098;24099;24100;24101;24102;24103;24104;24105;24106;24107;24108;24109 24105 13 LITDEFVK Unmodified 963.5277 0.5276981 2927 Q9UNF1-2;Q9UNF1;Q12816-5;Q12816-2;Q12816-3;Q12816-4;Q12816 MAGED2;TRO Melanoma-associated antigen D2;Trophinin yes no 0 0 0 0 0 6 0 1 62.569 62.569 2 0.0064109 19083 TMT1-5 105.57 62.321 84.621 115.93 106.67 87.294 76.56 90.557 80 116 109 87 80 87 1 1 1 1 1 1 10735 11916 2927 11794 18470 24110 24110 1 LITEDVQGK Unmodified 1001.5393 0.53932542 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 5 0 2 49.805 49.805 2;3 0.0014781 13920 TMT1-4 92.439 65.136 191.07 325.5 252.54 210.36 277.07 270.32 181 322 261 211 283 261 2 2 2 2 2 2 43799 11917 1386 11795 18471;18472 24111;24112 24112 2 LITEGASK Unmodified 817.45453 0.45453316 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 43.467 43.467 2 0.013027 11555 TMT1-5 95.815 37.211 176.79 231.45 207.9 150.43 175.99 278.53 167 232 212 152 184 266 1 1 1 1 1 1 18923 11918 1213 11796 18473 24113 24113 1 LITIEINPDCAAITQR Unmodified 1826.956 0.95603328 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 0 6 0 1 69.24 69.24 3 1.2815E-06 21708 TMT1-5 95.067 74.334 46.796 43.102 33.416 60.919 25.694 53.633 44 44 36 58 29 51 1 1 1 1 1 1 18159 11919 837 11797 18474 24114 24114 1 LITKPSEGTTLR Unmodified 1314.7507 0.75071518 1210 P49959-2;P49959;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 1 8 0 1 44.094 44.094 3 0.0011676 11269 TMT1-7 81.48 53.096 123.01 136.37 129.5 77.161 136.14 135.76 116 138 131 80 138 131 1 1 1 1 1 1 8165.2 11920 1210 11798 18475 24115 24115 1 LITLEEEMTK Unmodified 1205.6213 0.62134049 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 5 0 1 67.544 67.544 2 1.3193E-38 20847 TMT1-4 220.45 164.78 244.74 629.85 351.83 310.15 409.9 533.03 233 613 374 310 423 511 2 2 2 2 2 2 84960 11921 530 11799 18476 24116;24117 24116 2 LITQTFSHHNQLAQK Unmodified 1764.9271 0.92711641 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 9 0 1 43.182 43.182 4 0.028114 9187 TMT1-8 37.541 21.142 92.235 123.26 83.023 72.97 99.447 113.36 87 123 87 73 102 109 1 1 1 1 1 1 11718 11922 2956 11800 18477 24118 24118 1 LITTQQWLIK Unmodified 1242.7336 0.73360855 404 P00846 MT-ATP6 ATP synthase subunit a yes yes 0 0 0 0 0 9 0 1 69.718 69.718 2 1.6047E-12 19554 TMT1-8 181.25 122.57 115.94 173.91 204 103.91 162.89 204.29 110 174 203 109 167 196 2 2 2 2 2 2 23295 11923 404 11801 18478 24119;24120 24119 2 LITWSPVCR Unmodified 1130.5906 0.59064948 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 9 0 1 61.345 61.345 2 3.8298E-15 16223 TMT1-8 193.86 127.79 295.2 399.66 360.97 312.01 224.18 456.25 279 400 370 309 243 434 2 2 2 2 2 2 88857 11924 528 11802 18479 24121;24122 24121 2 LIVALMKPSR Unmodified 1126.6896 0.68963525 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 1 9 0 1 59.894 59.894 3 4.4176E-05 15638 TMT1-8 127.76 71.643 344.92 483.81 409.56 316.76 398.58 549.34 326 483 420 319 413 526 2 2 2 2 2 2 42184 11925 578 11803 18480 24123;24124 24123 2 LIVDEAINEDNSVVSLSQPK Unmodified 2169.1165 0.11649291 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 5 0 2 72.242 72.242 3;4 5.6504E-24 22670 TMT1-4 138.75 108.66 177.18 209.87 160.72 145.57 177.49 180.42 167 211 167 145 182 174 2 2 2 2 2 2 121310 11926 1311 11804 18481;18482 24125;24126 24125 2 LIVDVIR Unmodified 826.52764 0.52763852 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7 0 1 60.814 60.814 2 0.009578 17749 TMT1-6 111.73 29.341 77.392 117.23 58.207 105.49 134.33 150.74 73 116 65 102 138 145 1 1 1 1 1 1 23188 11927 1139 11805 18483 24127 24127 1 LIVENLSSR Unmodified 1029.5819 0.58185893 1687;1617 Q08170;Q13247;Q13247-3 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 no no 0 0 0 0 0 6 0 1 51.714 51.714 2 0.00023152 14825 TMT1-5 144.5 75.711 183.69 338.25 220.07 291.32 259.41 280.42 174 333 235 283 270 270 1 1 1 1 1 1 43574 11928 1617;1687 11806 18484 24128 24128 1 LIVGLMRPPAYCDAK Unmodified 1702.8899 0.88986797 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 9 0 2 62.12 62.12 3;4 7.933E-08 16512 TMT1-8 106.52 77.512 338.77 383.41 266.21 343.03 327.96 377.6 319 386 283 334 341 363 3 3 3 3 3 3 27693 11929 555 11807 18485;18486 24129;24130;24131 24129 3 LIVLVPPSKPTVNIPSSATIGNR Unmodified 2372.3791 0.37913037 3046 Q9Y624 F11R Junctional adhesion molecule A yes yes 0 0 0 0 1 9 0 1 68.421 68.421 4 3.3167E-15 18999 TMT1-8 87.729 78.167 192.78 155.4 109.98 117.59 140.29 174.02 181 160 116 116 145 167 1 1 1 1 1 1 42329 11930 3046 11808 18487 24132 24132 1 LIVPFCGHIK Unmodified 1182.6583 0.65833512 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 9 0 1 57.988 57.988 3 4.8592E-07 14961 TMT1-8 146.81 109.63 638.48 915.22 660.07 588.6 667.83 995.78 603 911 688 586 697 952 2 2 2 2 2 2 103640 11931 1934 11809 18488 24133;24134 24134 2 LIVPVLLDAAVPAYDK Unmodified 1695.9811 0.98110904 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 8 0 1 86.908 86.908 3 1.2325E-06 27951 TMT1-7 95.428 82.025 597.86 671.11 659.75 516.15 627.39 808.25 564 679 671 519 649 775 3 3 3 3 3 3 99228 11932 1878 11810 18489 24135;24136;24137 24136 3 LIYDFIEDQGGLEAVR Unmodified 1836.9258 0.92577901 1103 P42768 WAS Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 0 5 0 1 84.244 84.244 3 8.9487E-16 27361 TMT1-4 130.06 100.76 37.907 104.32 98.965 111.1 113.91 98.019 36 102 102 109 117 95 1 2 2 2 2 2 26256 11933 1103 11811 18490 24138;24139 24138 2 LIYEDYVSILSPK Unmodified 1538.8232 0.82321142 1205 P49795 RGS19 Regulator of G-protein signaling 19 yes yes 0 0 0 0 0 7 0 1 79.189 79.189 3 3.5963E-11 24961 TMT1-6 138.75 105.35 46.581 88.914 30.674 60.792 41.148 60.654 44 87 36 58 44 58 1 1 1 1 1 1 14957 11934 1205 11812 18491 24140 24140 1 LIYGQYCECDTINCER Unmodified 2092.8652 0.86524572 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 4 0 1 55.393 55.393 3 9.2131E-09 16407 TMT1-3 110.38 108.89 61.173 110.44 84.66 57.02 70.623 90.727 58 109 87 58 73 87 1 1 1 1 1 1 24136 11935 485 11813 18492 24141 24141 1 LIYLVPEK Unmodified 973.58482 0.58481905 2801 Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 ITSN2 Intersectin-2 yes no 0 0 0 0 0 8 0 1 67.222 67.222 2 0.0055656 20386 TMT1-7 117.02 70.453 84.822 101.39 85.128 56.011 122.76 96.701 80 102 87 58 123 94 1 1 1 1 1 1 8430.8 11936 2801 11814 18493 24142 24142 1 LKAAEEIGIK Unmodified 1070.6336 0.63356015 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 7 0 1 50.745 50.745 3 0.027475 13779 TMT1-6 59.265 29.714 169.83 202.2 139.83 91.436 158.01 150.06 160 203 145 94 160 145 1 1 1 1 1 1 5151.9 11937 657 11815 18494 24143 24143 1 LKAEAELLQQQK Unmodified 1397.7878 0.78782897 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 7 0 1 52.596 52.596 3 3.0436E-08 14540 TMT1-6 128.9 98.074 129.89 205.34 176.74 137.58 144.55 297.55 123 204 181 138 154 283 1 1 1 1 1 1 21366 11938 1833 11816 18495 24144 24144 1 LKAEDFIVDVINMDYGMQEK Unmodified 2357.1283 0.12831992 3006 Q9Y3Z3;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 6.5 0.5 1 1 85.678 85.678 4 0.0002837 27471 TMT1-6 61.89 47.875 124.6 94.58 77.172 69.261 82.739 147.94 117 98 80 69 87 141 2 2 2 2 2 2 10017 11939 3006 11817 18496;18497 24145;24146 24146 2 LKAEGSEIR Unmodified 1001.5506 0.55055881 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 5 0 1 34.569 34.569 3 0.0020832 7896 TMT1-4 96.009 39.35 1324.7 1812.9 1600.8 1209 1601.1 1742 1252 1813 1636 1221 1641 1677 1 1 1 1 1 1 104480 11940 530 11818 18498 24147 24147 1 LKAEQQEELAASFSSLLTYGLSLIR Unmodified 2766.4804 0.48036056 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 1 9 0 1 102.22 102.22 4 8.9746E-16 31944 TMT1-8 85.376 72.128 54.208 42.313 50.732 36.765 34.667 68.301 51 44 51 37 37 65 2 2 2 2 2 2 8505.7 11941 2066 11819 18499 24148;24149 24149 2 LKATQVSK Unmodified 873.52837 0.5283668 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 9 0 1 37.216 37.216 3 0.0021029 7106 TMT1-8 89.886 49.819 951.48 1251.6 787.41 617.65 521.17 1359.2 897 1249 827 617 570 1289 1 1 1 1 1 1 75753 + 11942 506 11820 18500 24150 24150 1 LKCDEWSVNSVGK Unmodified 1520.7293 0.72932781 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 7 0 2 51.207 51.207 3;4 1.363E-05 13998 TMT1-6 105.46 64.369 237.98 352.72 280.83 237.68 361.89 474.7 225 351 290 239 372 455 2 2 2 2 2 2 24501 11943 451 11821 18501;18502 24151;24152 24151 2 LKCEAVVADVLDK Unmodified 1458.7752 0.77521537 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 6 0 1 61.667 61.667 3 0.017124 18777 TMT1-5 56.397 36.559 92.019 99.999 139.05 85.244 82.921 121.29 87 102 138 87 87 116 1 1 1 1 1 1 4794.1 11944 1250 11822 18503 24153 24153 1 LKDCIELFTTK Unmodified 1366.7166 0.71663786 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 1 8 0 1 63.233 63.233 3 0.0082901 18833 TMT1-7 69.456 42.121 153 239.04 231.78 141.31 178.63 244.35 145 238 234 145 185 234 1 1 1 1 1 1 12721 11945 3012 11823 18504 24154 24154 1 LKDDEVAQLK Unmodified 1157.6292 0.62920306 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 1 3.67 1.89 1 2 48.269 48.269 2;3 0.0015091 13242 TMT1-4 134.68 73.278 596.03 706.67 576.79 557.72 771.78 720.98 562 711 598 555 786 697 3 3 3 3 3 3 296000 11946 527 11824 18505;18506;18507 24155;24156;24157 24157 3 LKDEEISAAAIK Unmodified 1286.7082 0.70818166 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 5.5 0.5 1 1 50.774 50.774 3 2.7631E-07 14382 TMT1-5 117.07 71.957 419.09 539.72 521.16 326.83 439.53 683.56 396 542 527 335 457 653 2 2 2 2 2 2 46257 11947 251 11825 18508;18509 24158;24159 24159 2 LKDELASTK Unmodified 1003.555 0.55497548 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 1 6 0 1 44.673 44.673 3 0.016354 12015 TMT1-5 67.153 15.426 1740.1 2648.2 1767.4 1664.9 1881.6 2468.5 1644 2627 1857 1652 1953 2366 1 1 1 1 1 1 151040 11948 1244 11826 18510 24160 24160 1 LKDIGPEVVK Unmodified 1096.6492 0.64921022 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 7 0 1 51.183 51.183 3 0.0038906 14015 TMT1-6 82.543 52.608 440.96 460.62 518.18 424.81 469.4 535.6 416 469 524 425 485 515 1 1 1 1 1 1 33459 11949 1250 11827 18511 24161 24161 1 LKDISTLEPLK Unmodified 1255.7388 0.73875351 2311 Q92688-2;Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 1 7.67 0.471 1 2 59.07 59.07 3;4 4.0203E-05 16926 TMT1-6 112.51 0 820.96 1421.7 939.58 752.04 913.03 1160.4 777 1403 982 755 944 1113 3 3 3 3 3 3 104170 11950 2311 11828 18512;18513;18514 24162;24163;24164 24162 3 LKDKEVAFWTNLFAK Unmodified 1808.9825 0.98250603 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 2 9 0 1 73.642 73.642 5 0.00062092 21113 TMT1-8 63.709 44.876 60.922 133.48 107.47 48.322 53.998 129.58 58 131 109 51 58 123 1 1 1 1 1 1 4214 11951 853 11829 18515 24165 24165 1 LKDLAFLK Unmodified 946.58515 0.5851534 37 L0R6Q1 SLC35A4 yes yes 0 0 0 0 1 9 0 1 61.741 61.741 3 0.009278 16365 TMT1-8 66.435 6.6348 200 255.73 253.01 146.91 220.66 292.18 189 257 255 152 227 280 1 1 1 1 1 1 20077 11952 37 11830 18516 24166 24166 1 LKDLEALLNSK Unmodified 1242.7184 0.71835242 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 1 9 0 1 70.432 70.432 3 0.0069708 19845 TMT1-8 67.964 36.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11953 429 11831 18517 24167 24167 1 LKDLFGK Unmodified 819.48544 0.48543935 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 1 9 0 1 57.652 57.652 3 0.022175 14751 TMT1-8 60.973 17.946 127.57 485.98 328.61 163.89 123.93 405.81 123 470 338 170 139 384 1 1 1 1 1 1 17384 11954 662;2634 11832 18518 24168 24168 1 LKDSEAELQR Unmodified 1187.6146 0.61461563 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 4 0 1 38.25 38.25 3 0.009643 9585 TMT1-3 71.896 39.834 575.35 870.4 667.56 487.86 653.92 743.53 544 865 688 494 671 715 1 1 1 1 1 1 153920 11955 1883 11833 18519 24169 24169 1 LKDVLLQVDDER Unmodified 1441.7777 0.77765821 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 5.5 0.5 1 1 60.819 60.819 3 3.4352E-09 18409 TMT1-5 148.41 118.49 926.99 1342.9 1219.8 943.95 1444.4 1268.9 877 1340 1245 955 1464 1229 4 4 4 4 4 4 208600 11956 1019 11834 18520;18521 24170;24171;24172;24173 24173 4 LKDVQEQLSR Unmodified 1214.6619 0.66190017 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 6 0 1 43.926 43.926 3 0.0012039 11756 TMT1-5 96.067 58.974 300.24 464.21 361.99 323.07 446.35 459.5 284 461 375 323 456 443 1 1 1 1 1 1 33337 11957 251 11835 18522 24174 24174 1 LKDYAFIHFDER Unmodified 1552.7674 0.76742787 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 7 0 1 56.272 56.272 4 0.0089473 15980 TMT1-6 62.081 43.249 146.03 210.83 165.51 137.48 185.69 196.18 138 210 171 138 190 189 1 1 1 1 1 1 26919 11958 226;227 11836 18523 24175 24175 1 LKEAETR Unmodified 845.46068 0.46068117 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 5 0 1 29.483 29.483 3 0.016585 5932 TMT1-4 82.75 21.779 2710.4 3374.9 3268.5 2658.7 3097.6 3407 2560 3395 3330 2664 3190 3279 1 1 1 1 1 1 388610 + 11959 519;520;521;592;593;594;595;518;1486;1487;551;552 11837 18524 24176 24176 1 LKEEENTVGR Unmodified 1173.599 0.59896556 2646 Q9H479 FN3K Fructosamine-3-kinase yes yes 0 0 0 0 1 4 0 1 34.153 34.153 3 0.022989 8027 TMT1-3 61.577 29.515 199.78 304.77 248.27 163.19 299.47 381.61 189 303 254 168 306 366 1 1 1 1 1 1 31965 11960 2646 11838 18525 24177 24177 1 LKEEIER Unmodified 915.50255 0.50254598 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 4 0 1 37.986 37.986 3 0.010438 9504 TMT1-3 90.64 4.9744 3831.6 4058.2 4336 3005.9 4033.4 4597.7 3614 4125 4374 3056 4139 4421 1 1 1 1 1 1 249840 11961 1597 11839 18526 24178 24178 1 LKEELEEAR Unmodified 1115.5823 0.58225287 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 1 4 0 1 44.618 44.618 3 0.014849 12127 TMT1-3 68.893 25.381 201.01 408.92 314.07 294.36 265.2 320.76 191 402 326 291 277 308 1 1 1 1 1 1 35511 11962 1584 11840 18527 24179 24179 1 LKEEYQSLIR Unmodified 1277.698 0.69795133 2995 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 0 0 0 0 1 7 0 1 51.86 51.86 3 0.0031048 14272 TMT1-6 85.813 53.493 354.17 415.98 356.21 365.97 392.25 393.89 334 419 369 361 404 380 1 1 1 1 1 1 41547 11963 2995 11841 18528 24180 24180 1 LKEIVTNFLAGFEA Unmodified 1550.8344 0.83444481 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 9 0 1 97.676 97.676 3 0.00011389 30294 TMT1-8 74.678 53.007 446.79 472.33 430.45 410.34 412.97 492.43 421 479 443 406 429 473 4 4 4 4 4 4 92863 11964 888 11842 18529 24181;24182;24183;24184 24183 4 LKELESQVSGLEK Unmodified 1458.793 0.79297392 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 1 6 0 1 59.583 59.583 3 0.0050235 17977 TMT1-5 66.246 39.097 84.586 132.03 98.814 71.89 106.83 113.15 80 131 102 73 109 109 1 1 1 1 1 1 7422.6 11965 2828 11843 18530 24185 24185 1 LKELIFEETAR Unmodified 1347.7398 0.73981614 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 1 6.5 0.5 1 1 62.464 62.464 3 0.0062823 19003 TMT1-5 73.219 40.696 307.42 380.57 308.03 310.33 248.8 320.16 290 382 320 305 262 307 2 2 2 2 2 2 45169 11966 930 11844 18531;18532 24186;24187 24186 2 LKELQAIAER Unmodified 1169.6768 0.67682195 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 1 7 0 1 51.542 51.542 3 0.011825 14113 TMT1-6 68.676 39.328 191.39 351.22 176.5 182.43 259.79 353.96 181 345 191 181 268 339 1 1 1 1 1 1 31888 11967 1691 11845 18533 24188 24188 1 LKELTLEDLK Unmodified 1200.6966 0.69655434 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 1 7 0 1 61.935 61.935 3 0.021898 18276 TMT1-6 62.14 28.254 191.45 326.57 187.32 167.02 231.03 237.52 181 322 199 167 236 229 1 1 1 1 1 1 30524 11968 568 11846 18534 24189 24189 1 LKENLYPYLGPSTLR Unmodified 1762.9618 0.96177059 2734 Q9NRW7;Q9NRW7-2 VPS45 Vacuolar protein sorting-associated protein 45 yes no 0 0 0 0 1 9 0 1 60.664 60.664 3 0.009884 15965 TMT1-8 47.223 21.075 68.762 93.948 85.639 56.385 101.27 82.39 65 94 87 58 102 80 1 1 1 1 1 1 6567.1 11969 2734 11847 18535 24190 24190 1 LKEQGQAPITPQQGQALAK Unmodified 2005.0956 0.095638305 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 1 7 0 1 47.007 47.007 4 3.0943E-05 12333 TMT1-6 73.809 59.937 138.64 240.84 118.57 180.12 159.46 202.25 131 237 131 174 167 194 1 1 1 1 1 1 24411 11970 1522 11848 18536 24191 24191 1 LKETAESVLK Unmodified 1116.639 0.63903946 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 1 7 0 1 53.431 53.431 3 0.010275 14925 TMT1-6 70.963 10.399 122.58 222.59 129.06 141.08 109.4 158.91 116 219 138 138 116 152 1 1 1 1 1 1 27496 11971 1009 11849 18537 24192 24192 1 LKEVHEQLLSTEQVSDQK Unmodified 2110.0906 0.090612506 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 5.67 0.471 1 2 48.599 48.599 4;5 2.7786E-14 13546 TMT1-5 121.72 105.78 1397.7 1701.1 1697 1184.5 1495.1 1878.3 1320 1714 1718 1202 1543 1802 4 4 4 4 4 4 268680 11972 1684 11850 18538;18539;18540 24193;24194;24195;24196 24196 4 LKEVLEYNAIGGK Unmodified 1432.7926 0.79257999 702 P14324-2;P14324 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 1 7.67 0.471 1 2 60.768 60.768 3;4 0.0024157 17827 TMT1-7 69.714 49.332 427.09 560.01 420.74 439.6 515.06 495.92 403 560 440 434 528 479 2 2 2 2 2 2 44334 11973 702 11851 18541;18542;18543 24197;24198;24199 24199 3 LKGDDLQAIK Unmodified 1099.6237 0.62372375 547 P07910-2;P07910;P0DMR1;O60812;B7ZW38;B2RXH8;P07910-3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 1 7 0 1 48.711 48.711 3 0.0006256 12999 TMT1-6 101.39 42.416 631.58 997.47 668.2 636.03 1084.1 843.19 597 988 702 637 1092 820 1 1 1 1 1 1 77231 11974 547 11852 18544 24200 24200 1 LKGEATVSFDDPPSAK Unmodified 1660.8308 0.83081599 1026 P35637-2;P35637 FUS RNA-binding protein FUS yes no 0 0 0 0 1 6 0 2 50.537 50.537 3;4 0.00018816 14366 TMT1-5 78.012 58.434 321.35 514.66 377.67 313.72 428.79 496.25 304 510 392 315 440 477 2 2 2 2 2 2 48479 11975 1026 11853 18545;18546 24201;24202 24202 2 LKGEIDASVPELEGDLR Unmodified 1839.9578 0.95780742 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 62.845 62.845 3 0.03338 19079 TMT1-4 43.764 23.925 68.633 102.22 100.3 80.578 47.018 76.476 65 102 102 80 51 73 1 1 1 1 1 1 10760 11976 1632 11854 18547 24203 24203 1 LKGEMMDLQHGSLFLQTPK Unmodified 2172.1071 0.10713097 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 1 9 0 1 63.428 63.428 4 1.8774E-11 17081 TMT1-8 99.059 69.942 123.19 129.33 104.63 110.67 118.38 151.19 116 131 109 109 123 145 1 1 1 1 1 1 11840 11977 527 11855 18548 24204 24204 1 LKGEMMDLQHGSLFLR Unmodified 1873.9543 0.95425914 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 8 0 1 61.096 61.096 4 0.0040883 17984 TMT1-7 56.851 39.632 107.82 183.35 117.41 92.779 157.69 157.53 102 181 123 94 160 152 1 1 1 1 1 1 17387 11978 385 11856 18549 24205 24205 1 LKGIEEEEILPGFILCDPNNLCHSGR Unmodified 3009.4688 0.46882637 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 1 6 0 1 71.002 71.002 4 1.4656E-11 22425 TMT1-5 88.573 82.139 92.598 85.418 54.183 66.929 47.133 91.397 87 87 58 65 51 87 1 1 1 1 1 1 12540 11979 718 11857 18550 24206 24206 1 LKGIVPLAK Unmodified 937.63244 0.63243794 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 9 0 1 54.719 54.719 3 0.0025443 13593 TMT1-8 89.247 68.918 696.52 883.28 490.62 566.84 327.54 912.74 656 882 529 551 368 865 2 2 2 2 2 2 68954 11980 955 11858 18551 24207;24208 24207 2 LKGPLAR Unmodified 753.48611 0.48610806 218 O60268-2;O60268-3;O60268 KIAA0513 Uncharacterized protein KIAA0513 yes no 0 0 0 0 1 9 0 1 37.609 37.609 3 0.03996 7246 TMT1-8 53.679 24.369 99.485 122.02 127.97 133.5 109.2 174.91 94 123 131 131 116 167 1 1 1 1 1 1 4617.4 11981 218 11859 18552 24209 24209 1 LKGPQITGPSLEGDLGLK Unmodified 1822.02 0.020013746 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 8 0 1 63.154 63.154 4 9.1504E-06 18764 TMT1-7 80.638 35.625 130.02 234.85 129.43 115.31 199.91 207.5 123 231 138 116 203 200 1 1 1 1 1 1 25213 11982 1632 11860 18553 24210 24210 1 LKGSGNLEAIHIIK Unmodified 1491.8773 0.87731267 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 1 9 0 1 51.782 51.782 4 0.0022996 12481 TMT1-8 61.444 29.103 466.24 632.4 451.56 471.75 567.55 660.71 440 631 474 466 585 635 1 1 1 1 1 1 28843 11983 1504 11861 18554 24211 24211 1 LKGTEDEVEK Unmodified 1146.5768 0.57683314 551;552 P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 1 4.5 0.5 1 1 39.958 39.958 3 0.0012349 9961 TMT1-4 73.624 11.365 286.92 234.69 270.19 168.47 298.35 194.03 270 243 271 174 299 190 1 1 1 1 1 1 32727 + 11984 551;552 11862 18555;18556 24212;24213 24213 2 LKGYTSWAIGLSVADLAESIMK Unmodified 2352.2399 0.23991928 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 1 9 0 2 93.642 93.642 3;4 2.0259E-06 28827 TMT1-8 65.438 46.878 100.26 183.72 126.08 92.704 134.16 142.21 95 181 131 94 137 137 3 3 3 3 3 3 12739 11985 385 11863 18557;18558 24214;24215;24216 24216 3 LKHEDTNLASSTLLR Unmodified 1696.9108 0.91079765 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 1 7 0 1 44.971 44.971 4 4.397E-05 11499 TMT1-6 88.561 0 326.07 332.97 279.77 326.64 342.52 340.94 307 338 292 320 353 329 2 2 2 2 2 2 33998 11986 1179 11864 18559 24217;24218 24217 2 LKIDFGEAAR Unmodified 1118.6084 0.60840804 577 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 1 8 0 1 51.645 51.645 3 0.030149 14266 TMT1-7 57.885 27.228 169.72 196.5 163.32 106.24 168.28 257.43 160 198 167 109 174 246 1 1 1 1 1 1 6933.7 11987 577 11865 18560 24219 24219 1 LKIPEGLFDPSNVK Unmodified 1555.861 0.86099391 383 O96019-2;O96019 ACTL6A Actin-like protein 6A yes no 0 0 0 0 1 8 0 1 67.508 67.508 3 0.0013208 20470 TMT1-7 74.141 46.492 77.004 108.6 130.68 93.416 81.739 144.78 73 109 131 94 87 138 1 1 1 1 1 1 10386 11988 383 11866 18561 24220 24220 1 LKKPDQAIK Unmodified 1039.639 0.63897988 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 2 9 0 1 39.328 39.328 4 0.031055 7899 TMT1-8 62.303 21.871 137.46 555.21 412.3 279.7 442.81 499.04 133 537 424 286 452 480 1 1 1 1 1 1 13929 11989 692 11867 18562 24221 24221 1 LKLEDFFAR Unmodified 1137.6182 0.61824444 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 1 8.5 0.5 1 1 64.065 64.065 3 0.0034683 19178 TMT1-7 88.948 63.29 905 1138.3 941.77 905.04 1139.8 1143.3 854 1142 975 899 1167 1103 4 4 4 4 4 4 150650 11990 655 11868 18563;18564 24222;24223;24224;24225 24223 4 LKLEWVYGYR Unmodified 1325.7132 0.71320746 374 O95834;O95834-2;O95834-3;O00423;O00423-3 EML2;EML1 Echinoderm microtubule-associated protein-like 2;Echinoderm microtubule-associated protein-like 1 yes no 0 0 0 0 1 9 0 1 61.876 61.876 3 0.0074299 16449 TMT1-8 64.906 37.935 122.63 150.43 181.16 113.19 148.89 142.86 116 152 181 116 152 138 1 1 1 1 1 1 10994 11991 374 11869 18565 24226 24226 1 LKLGEIVTTIPTIGFNVETVEYK Unmodified 2563.4149 0.41490676 1519;1520;774 P84085;P84077;P61204;P18085 ARF5;ARF1;ARF3;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4 no no 0 0 0 0 1 9 0 1 82.376 82.376 4 0.00070512 24529 TMT1-8 49.287 35.832 69.419 33.177 26.665 53.255 47.761 91.379 65 36 29 51 51 87 1 1 1 1 1 1 8697.3 11992 1520;1519;774 11870 18566 24227 24227 1 LKLPAVVTADLR Unmodified 1294.7973 0.79727144 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 1 9 0 1 60.95 60.95 3 0.004955 16160 TMT1-8 59.871 33.752 347.11 444.74 255.4 332.14 476.33 396.82 327 444 276 326 483 385 2 2 2 2 2 2 39715 11993 1055 11871 18567 24228;24229 24229 2 LKLTFEELER Unmodified 1276.7027 0.70270235 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2 NEXN Nexilin yes no 0 0 0 0 1 7 0 1 60.085 60.085 3 0.043145 17542 TMT1-6 52.903 25.574 99.62 131.03 97.77 94.961 103.9 167.6 94 131 102 94 109 160 1 1 1 1 1 1 15041 11994 1635 11872 18568 24230 24230 1 LKNELLEIK Unmodified 1098.6649 0.66486028 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 1 7 0 1 57.522 57.522 3 0.016418 16451 TMT1-6 67.08 29.33 160.72 248.83 187.79 167.42 208.58 190.19 152 247 195 167 213 184 1 1 1 1 1 1 24171 11995 2378 11873 18569 24231 24231 1 LKNQVTQLK Unmodified 1070.6448 0.64479354 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 9 0 1 43.759 43.759 3 0.028921 9376 TMT1-8 49.466 6.7226 153.79 181.89 146.79 134.32 180.23 206.99 145 183 152 134 185 199 1 1 1 1 1 1 13371 11996 657 11874 18570 24232 24232 1 LKNSLFEYQK Unmodified 1268.6765 0.6764876 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 9 0 1 53.438 53.438 3 0.00085991 13115 TMT1-8 93.839 44.339 455.5 691.56 583.61 465.09 444.94 980.82 431 688 599 465 478 932 2 2 2 2 2 2 89229 11997 437 11875 18571 24233;24234 24233 2 LKPEDITQIQPQQLVLR Unmodified 2018.1524 0.1524249 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 1 7.5 0.5 2 2 65.03 65.03 3;4 6.1172E-10 19461 TMT1-7 113.11 92.167 730.82 988.05 767.79 757.89 681.39 831.22 690 987 799 747 712 798 7 7 7 7 7 7 218770 11998 500 11876 18572;18573;18574;18575 24235;24236;24237;24238;24239;24240;24241 24239 7 LKPFGVQR Unmodified 943.56034 0.56033563 2843 Q9UBQ7;Q9UBQ7-2 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 0 0 0 0 1 9 0 1 42.581 42.581 3 0.009636 8974 TMT1-8 65.88 28.152 273.92 305.37 231.49 287.76 296.32 367.84 258 308 244 281 308 353 1 1 1 1 1 1 16164 11999 2843 11877 18576 24242 24242 1 LKPGAPLRPK Unmodified 1075.6866 0.68659878 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 2 9 0 2 37.913 37.913 3;4 0.0085802 7386 TMT1-8 74.267 33.04 10976 14833 12842 9993.2 11612 13755 10370 14838 13154 10043 11992 13214 2 2 2 2 2 2 363770 12000 831 11878 18577;18578 24243;24244 24243 2 LKPGDLVGVNK Unmodified 1138.671 0.67100829 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 1 8 0 1 50.943 50.943 3 0.010009 13941 TMT1-7 66.498 28.411 373.26 576.12 437.97 328.72 428.02 498.4 353 572 452 332 440 479 2 2 2 2 2 2 42003 12001 769 11879 18579 24245;24246 24245 2 LKPGYLEATVDWFR Unmodified 1693.8828 0.88279198 1834 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 1 9 0 1 71.077 71.077 3 5.1769E-05 20091 TMT1-8 87.566 58.267 210.03 360.96 282.45 241.9 423.14 269.35 199 357 292 244 424 264 1 1 1 1 1 1 37498 12002 1834 11880 18580 24247 24247 1 LKPLEVELR Unmodified 1095.6652 0.66519463 1197 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 1 7 0 1 52.62 52.62 3 0.0041658 14499 TMT1-6 86.189 58.525 514.69 1160.4 879.41 692.21 972.54 1152.3 490 1137 908 698 998 1107 2 2 2 2 2 2 146910 12003 1197 11881 18581 24248;24249 24248 2 LKPLPGETMEK Unmodified 1241.669 0.66895938 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7 0 2 48.71 48.71 3;4 0.0017046 13107 TMT1-6 87.216 51.948 4219.2 5835.7 4577.6 3207.7 4278.7 6841 3985 5824 4706 3258 4456 6532 3 3 3 3 3 3 442460 12004 3010 11882 18582;18583 24250;24251;24252 24252 3 LKPQYLEELPGQLK Unmodified 1654.9294 0.92940782 827 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 0 1 8 0 1 62.359 62.359 3 0.0026899 18493 TMT1-7 67.136 49.855 76.929 154.8 104.06 94.289 119.65 136.23 73 152 109 94 123 131 1 1 1 1 1 1 13481 12005 827 11883 18584 24253 24253 1 LKQEEETLSFIR Unmodified 1491.7933 0.79330827 2938 Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5;Q9UPT5-4 EXOC7 Exocyst complex component 7 yes no 0 0 0 0 1 6 0 1 56.023 56.023 3 0.0065587 16541 TMT1-5 66.706 42.324 91.581 178.65 146 163.46 144.71 197.34 87 176 152 160 152 189 1 1 1 1 1 1 12530 12006 2938 11884 18585 24254 24254 1 LKQEYFVVAATLQDIIR Unmodified 2006.1201 0.12006214 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 1 9 0 1 85.738 85.738 3 1.4482E-14 25728 TMT1-8 120.31 98.097 145.97 210.68 174.62 176.06 197.27 203.31 138 210 181 174 203 196 2 2 2 2 2 2 32569 12007 648;515 11885 18586 24255;24256 24255 2 LKQIEEQTK Unmodified 1115.6186 0.61863837 894 P26038 MSN Moesin yes yes 0 0 0 0 1 6.5 0.5 1 1 42.406 42.406 2;3 0.013261 11013 TMT1-5 121.83 53.837 345.23 542.94 308.02 281.89 249.68 454.45 326 537 328 279 266 433 2 2 2 2 2 2 92483 12008 894 11886 18587;18588 24257;24258 24257 2 LKQNLEEQLDR Unmodified 1384.731 0.73104237 2290 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 1 5 0 1 49.363 49.363 3 0.027452 13721 TMT1-4 56.493 36.178 243.49 619.73 389.47 353.33 377.68 499.84 232 604 410 351 393 479 1 1 1 1 1 1 35530 12009 2290 11887 18589 24259 24259 1 LKQQSELQSQVR Unmodified 1442.7841 0.78414057 1801 Q14847;Q14847-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 1 7 0 1 37.367 37.367 3 6.6447E-14 8529 TMT1-6 172.92 161.15 469.49 589.97 303.46 355.53 358.95 707.18 442 589 330 348 382 673 1 1 1 1 1 1 52734 12010 1801 11888 18590 24260 24260 1 LKQSAEEQAQAR Unmodified 1357.695 0.69499121 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 5.5 0.5 1 1 34.028 34.028 3 0.0081922 7648 TMT1-4 65.565 33.087 260.98 288.8 256.52 162.53 250.74 217.77 246 292 261 167 254 211 2 2 2 2 2 2 15200 12011 1833 11889 18591;18592 24261;24262 24261 2 LKQVEDEK Unmodified 987.52368 0.52367535 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4 2.16 1 1 1 39.294 39.294 3 0.0020433 9696 TMT1-4 112.75 56.185 5395 6743.9 6735.8 5382.1 6483.3 7263.1 5097 6786 6846 5403 6673 6987 4 4 4 4 4 4 422020 12012 1019 11890 18593;18594;18595 24263;24264;24265;24266 24265 4 LKSDTAAAAVR Unmodified 1101.6142 0.6142217 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 7 0 1 36.014 36.014 3 0.00015697 7980 TMT1-6 103.46 38.066 604.08 843.82 550.65 594.59 579.85 716.86 570 840 583 584 604 688 2 2 2 2 2 2 35915 12013 845 11891 18596 24267;24268 24267 2 LKSEDEPTR Unmodified 1073.5353 0.53530267 2336 Q92973-2;Q92973;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 yes no 0 0 0 0 1 4 0 1 30.864 30.864 3 0.009077 6665 TMT1-3 75.566 31.915 130.11 177.89 163.2 138.34 147.22 157.83 123 178 167 138 152 152 1 1 1 1 1 1 16193 12014 2336 11892 18597 24269 24269 1 LKSEDGVEGDLGETQSR Unmodified 1818.8595 0.85954994 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 3 0 1 43.78 43.78 3 1.2563E-08 12807 TMT1-2 82.265 64.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12015 1632 11893 18598 24270 24270 1 LKSELVANNVTLPAGEQR Unmodified 1938.0534 0.053439139 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 7 0 2 53.102 53.102 3;4 1.8416E-10 14752 TMT1-6 114.02 98.627 185.27 245.7 212.46 149.46 213.13 233.77 175 246 217 152 218 225 2 2 2 2 2 2 28949 12016 1089;1090 11894 18599;18600 24271;24272 24272 2 LKTEAEIALK Unmodified 1114.6598 0.6597749 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 7 0 1 51.277 51.277 3 0.0095123 13989 TMT1-6 72.089 34.368 234.45 448.14 251.62 255.25 333.82 415.81 222 440 269 253 344 399 1 1 1 1 1 1 44354 12017 1833 11895 18601 24273 24273 1 LKVEQHVELYQK Unmodified 1512.83 0.83002813 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 1 7 0 1 45.368 45.368 4 1.9412E-05 11646 TMT1-6 105.65 64.112 384.24 504.86 455.28 350.68 600.18 542.52 363 506 465 356 607 525 2 2 2 2 2 2 59954 12018 415 11896 18602 24274;24275 24274 2 LKVGLQVVAVK Unmodified 1152.7594 0.75942937 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 57.305 57.305 3 0.0039833 14658 TMT1-8 68.355 51.415 68.033 202.01 116.47 93.135 141.67 166.52 65 196 123 94 145 160 1 1 1 1 1 1 5365.2 12019 638 11897 18603 24276 24276 1 LKVPAGQPER Unmodified 1093.6244 0.62439245 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 1 8 0 1 36.101 36.101 3 0.02636 8108 TMT1-7 59.84 35.81 191.51 258.72 235.85 164.73 198.88 262.96 181 259 240 167 206 252 1 1 1 1 1 1 16152 12020 1081 11898 18604 24277 24277 1 LKVPEWVDTVK Unmodified 1312.7391 0.73908786 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 1 8 0 2 61.567 61.567 3;4 5.3495E-06 18178 TMT1-7 122.46 78.647 660.24 695.32 614.85 828.55 779.84 976.59 622 705 644 805 814 937 2 2 2 2 2 2 71084 12021 1060 11899 18605;18606 24278;24279 24279 2 LKVTEGGEPYR Unmodified 1247.651 0.65100113 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 6 0 1 39.481 39.481 3 0.014523 9965 TMT1-5 63.908 41.881 331.67 573.24 396.14 280.47 394.78 434.32 314 566 411 285 404 418 1 1 1 1 1 1 43056 12022 1792 11900 18607 24280 24280 1 LKYPVSQQNK Unmodified 1203.6612 0.66117189 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 1 9 0 1 40.5 40.5 3 1.5036E-06 8270 TMT1-8 143.4 107.89 153.25 241.89 187.78 178 168.95 203.05 145 240 195 176 176 195 1 1 1 1 1 1 15190 12023 1601 11901 18608 24281 24281 1 LLAALLEDEGGSGR Unmodified 1399.7307 0.73070802 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.33 0.471 2 1 75.802 75.802 2;3 4.2753E-17 24185 TMT1-4 147.96 125.24 207.45 290.67 233.56 171.3 205.72 219.06 196 290 240 173 210 211 5 5 5 5 4 5 95348 12024 3010 11902 18609;18610;18611 24282;24283;24284;24285;24286 24283 5 LLAALLEDEGGSGRPLLQAAK Unmodified 2121.1794 0.17936793 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6.89 2.18 1 4 3 1 75.963 75.963 3;4;5 7.9894E-53 23598 TMT1-7 198.96 175.3 5094.7 6413 5913.6 4644.6 5877.9 6810.3 4811 6443 6036 4673 6047 6546 16 16 16 16 16 16 1493800 12025 3010 11903 18612;18613;18614;18615;18616;18617;18618;18619;18620 24287;24288;24289;24290;24291;24292;24293;24294;24295;24296;24297;24298;24299;24300;24301;24302 24295 16 LLACDGNEIDTMFVDR Unmodified 1867.8444 0.84443392 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 4 0 1 72.777 72.777 3 4.7504E-07 23211 TMT1-3 101.01 85.373 15.623 52.629 34.76 21.442 28.315 30.106 15 51 36 22 29 29 1 1 1 1 1 1 6153.2 12026 378 11904 18621 24303 24303 1 LLADPTGAFGK Unmodified 1088.5866 0.58660996 947 P30044-2;P30044;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 8 0 1 64.869 64.869 2 8.8563E-09 19401 TMT1-7 163.94 100.37 593.99 698.65 746.89 539.31 688.91 843.8 561 706 754 546 710 810 2 2 2 2 2 2 195270 12027 947 11905 18622 24304;24305 24304 2 LLADQAEAR Unmodified 985.51926 0.51925868 1523 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 0 3.5 0.5 1 1 40.679 40.679 2 0.00035014 11655 TMT1-2 104.2 41.483 107.64 216.29 120.92 163.92 199.44 156.34 102 212 131 160 203 152 1 1 1 1 1 1 28790 12028 1523 11906 18623;18624 24306;24307 24306 2 LLAEALNQVTQR Unmodified 1354.7569 0.75686319 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 8 0 2 68.957 68.957 2;3 8.6687E-09 21076 TMT1-7 131.17 102.84 241.16 371.83 270.37 252.02 272.14 388.79 228 369 282 250 284 372 2 2 2 2 2 2 41322 12029 1596 11907 18625;18626 24308;24309 24309 2 LLAEGHPDPDAELQR Unmodified 1659.8216 0.82164829 1198 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 0 0 3 0 1 46.483 46.483 3 0.02207 13912 TMT1-2 46.68 33.48 54.19 57.375 40.876 67.713 47.61 76.459 51 58 44 65 51 73 1 1 1 1 1 1 14572 12030 1198 11908 18627 24310 24310 1 LLAELPASVHALTGVDLSK Unmodified 1933.0884 0.088427662 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 8 0 2 77.334 77.334 3;4 0.00011263 24327 TMT1-7 65.105 54.289 53.807 80.051 86.181 64.617 68.677 106.77 51 80 87 65 72 102 2 2 2 2 2 2 12300 12031 1767 11909 18628;18629 24311;24312 24311 2 LLAEMDSQFDSTTGFLGK Unmodified 1958.9295 0.92954376 131 O15155 BET1 BET1 homolog yes yes 0 0 0 0 0 6 0 1 82.204 82.204 4 0.00050961 26807 TMT1-5 62.813 52.199 15.855 21.975 21.763 14.421 35.967 29.888 15 22 22 15 36 29 1 1 1 1 1 1 2530.8 12032 131 11910 18630 24313 24313 1 LLAEPVPGIK Unmodified 1035.6328 0.63283187 1377 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 0 7 0 1 62.468 62.468 2 2.6866E-06 18390 TMT1-6 157.91 102.23 425.1 753.95 411.45 508.62 536.07 736.23 402 742 445 497 559 705 2 2 2 2 2 2 120240 12033 1377 11911 18631 24314;24315 24314 2 LLAESVTEVEIFGK Unmodified 1533.829 0.82902508 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 79.222 79.222 3 0.00013822 25634 TMT1-5 82.85 70.49 46.614 50.152 57.941 35.256 33.946 60.859 44 51 58 36 36 58 1 1 1 1 1 1 4796.1 12034 1763 11912 18632 24316 24316 1 LLAETVAPAVR Unmodified 1138.671 0.67100829 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 55.192 55.192 2 3.37E-06 15635 TMT1-6 101.11 58.079 169.21 277.11 180.58 193.16 141.07 263.54 160 274 191 189 152 251 1 1 1 1 1 1 39251 12035 2525 11913 18633;18634 24317;24318 24318 2 LLAGPDTEVLSFVLK Unmodified 1600.9076 0.90760975 2280 Q8WWW0-2;Q8WWW0 RASSF5 Ras association domain-containing protein 5 yes no 0 0 0 0 0 8 0 1 88.465 88.465 3 0.00015043 28542 TMT1-7 61.409 49.718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12036 2280 11914 18635 24319 24319 1 LLAITELLQQK Unmodified 1268.7704 0.77038799 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 83.053 83.053 3 1.788E-07 24723 TMT1-8 129.38 129.38 46.612 50.146 58.304 27.134 57.867 45.253 44 51 58 29 58 44 1 1 1 1 1 1 9818.9 12037 822 11915 18636 24320 24320 1 LLAITQEASDTSWQALIDEDR Unmodified 2374.1652 0.16523401 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-7;Q14BN4-6 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 5 0 1 84.4 84.4 3 2.5208E-10 27475 TMT1-4 95.624 90.768 23.303 36.396 20.156 30.237 13.765 15.597 22 36 22 29 15 15 1 1 1 1 1 1 6692 12038 1806 11916 18637 24321 24321 1 LLAIVADLYEQEQYSDLK Unmodified 2110.0834 0.083401864 2830 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 0 6 0 2 96.031 96.031 3;4 0.00061194 31717 TMT1-5 61.641 44.152 23.381 29.059 13.169 38.976 36.142 22.421 22 29 14 37 37 22 2 2 1 2 2 2 1535.5 12039 2830 11917 18638;18639 24322;24323;24324 24322 3 LLALDPMMEQEIEEIR Unmodified 1928.9587 0.9587354 1665 Q13043 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes yes 0 0 0 0 0 4 0 1 84.929 84.929 3 5.3784E-16 27894 TMT1-3 134.9 129.8 23.226 52.371 19.543 22.478 21.436 15.818 22 51 22 22 22 15 2 2 2 2 2 1 4495.8 12040 1665 11918 18640 24325;24326 24325 2 LLALGDSGVGK Unmodified 1028.5866 0.58660996 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 7.5 0.5 1 1 60.939 60.939 2 2.751E-23 17971 TMT1-7 196.88 134.16 1259 1672.8 1591.9 1363.4 1615.9 1805.5 1190 1677 1626 1362 1664 1737 4 4 4 4 4 4 305930 12041 50 11919 18641;18642 24327;24328;24329;24330 24330 4 LLALLEVLSGQK Unmodified 1282.786 0.78603805 2224 Q8NF91-4;Q8NF91;Q8NF91-5;Q8NF91-6;Q8NF91-10;Q8NF91-7 SYNE1 Nesprin-1 yes no 0 0 0 0 0 9 0 1 93.321 93.321 3 0.0030773 28623 TMT1-8 62.408 41.035 15.857 21.981 21.421 22.104 35.357 37.367 15 22 22 22 36 36 1 1 1 1 1 1 2422.9 12042 2224 11920 18643 24331 24331 1 LLALNPDAVELFK Unmodified 1441.8181 0.81806646 2526 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 82.961 82.961 3 9.6106E-12 26510 TMT1-7 111.39 90.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12043 2526 11921 18644 24332 24332 1 LLALNSLYSPK Unmodified 1217.702 0.70197407 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 69.638 69.638 2 0.00010046 19526 TMT1-8 106.62 63.176 61.578 72.708 48.588 43.137 109.47 74.694 58 73 51 44 109 73 1 1 1 1 1 1 7020.8 12044 1507 11922 18645 24333 24333 1 LLAPSDSPEWLSFDVTGVVR Unmodified 2187.1212 0.12118435 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 7.33 0.471 2 1 85.89 85.89 3;4 9.8087E-18 27556 TMT1-6 122.01 105.32 76.977 132.27 115.09 71.328 85.121 106.3 73 131 117 73 88 102 4 4 4 4 4 4 51964 12045 415 11923 18646;18647;18648 24334;24335;24336;24337;24338 24334 5 LLAQDQGQGAPLLEPAP Unmodified 1716.9046 0.90464964 1828 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 0 4 0 1 73.771 73.771 3 9.5748E-10 23580 TMT1-3 106.14 89.474 15.677 29.037 45.585 4.5199 22.021 22.824 15 29 44 7 22 22 1 1 1 1 1 1 9716 12046 1828 11924 18649 24339 24339 1 LLAQTTLR Unmodified 914.55492 0.5549159 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 6 3.56 1 1 1 48.117 48.117 2 0.00080969 11113 TMT1-8 152.47 91.499 1159.6 1369.4 1239.4 1097.6 1117.7 1590.6 1094 1380 1272 1091 1169 1522 3 3 3 3 3 3 469070 12047 906 11925 18650;18651;18652 24340;24341;24342;24343 24343 4 LLASADDFGK Unmodified 1035.5237 0.52367535 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 6 0 1 60.049 60.049 2 1.7024E-05 18104 TMT1-5 152.34 100.49 200.91 212.92 136.94 138.36 229.22 267.42 189 215 145 138 234 257 1 1 1 1 1 1 24163 12048 374 11926 18653 24344 24344 1 LLASAGQDNVVR Unmodified 1241.6728 0.67279921 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 6 0 1 47.265 47.265 2 5.4537E-25 13039 TMT1-5 195.83 150.85 91.941 138.64 119.41 109.93 111.09 151.4 87 138 123 109 116 145 1 1 1 1 1 1 26450 12049 1960 11927 18654 24345 24345 1 LLASVEER Unmodified 915.50255 0.50254598 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 4 0 1 48.29 48.29 2 8.1008E-05 13640 TMT1-3 156.4 40.102 341.15 348.3 256.28 248.7 318.61 380 321 353 268 247 328 365 2 2 2 2 2 2 53646 12050 3051 11928 18655 24346;24347 24347 2 LLAVAATAPPDAPNREEVFDER Unmodified 2380.2023 0.20228822 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 4.43 1.59 1 2 2 2 59.856 59.856 3;4 5.9313E-50 17783 TMT1-4 171.79 149.35 798.9 1076.9 972.88 811.51 958.05 1170.8 755 1078 996 812 990 1124 11 11 11 11 11 11 1053300 12051 776 11929 18656;18657;18658;18659;18660;18661;18662 24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358 24353 11 LLCEHFR Unmodified 973.48037 0.48037075 1677 Q13155-2;Q13155 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 0 7 0 1 41.483 41.483 3 0.0034975 10141 TMT1-6 99.139 66.997 77.496 71.114 79.677 49.95 55.499 83.696 73 73 80 51 58 80 1 1 1 1 1 1 5328.5 12052 1677 11930 18663 24359 24359 1 LLCETLLEPGCQLESLWVK Unmodified 2287.1592 0.15922612 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 7 0 2 90.221 90.221 3;4 3.4829E-13 29162 TMT1-6 107.51 74.515 177.51 230.4 267.96 163.82 203.84 241.5 168 232 268 168 210 232 4 4 4 4 4 4 48168 12053 681 11931 18664;18665 24360;24361;24362;24363 24362 4 LLCGGGIAADR Unmodified 1101.5601 0.56007764 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 48.36 48.36 2 0.00034082 13505 TMT1-5 104.06 57.899 108.29 114.48 98.002 111.05 119.17 127.72 102 116 102 109 123 123 1 1 1 1 1 1 11811 12054 483 11932 18666 24364 24364 1 LLCGLLAER Unmodified 1043.5798 0.57975045 698 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 0 0 6 3.56 1 1 1 65.863 65.863 2 1.0885E-05 19859 TMT1-7 157.33 96.647 1479.5 2163.8 1440.5 1428.6 2116.7 2365.8 1397 2150 1517 1422 2164 2276 4 4 4 4 4 4 357730 12055 698 11933 18667;18668;18669 24365;24366;24367;24368;24369 24367 5 LLCQCLGFGSGHFR Unmodified 1650.7759 0.77590085 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-11;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 9 0 1 56.845 56.845 3 0.00089078 14456 TMT1-8 60.861 38.387 77.216 124.3 81.637 104.38 119.18 136.25 73 123 87 102 123 131 1 1 1 1 1 1 10490 12056 442 11934 18670 24370 24370 1 LLDAEDVDVPSPDEK Unmodified 1640.7781 0.77811172 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 3 0 1 63.875 63.875 3 0.00066499 20703 TMT1-2 72.417 51.188 30.566 58.938 42.656 28.333 43.704 29.667 29 58 44 29 44 29 1 1 1 1 1 1 5621.9 12057 2935 11935 18671 24371 24371 1 LLDAQLATGGIVDPR Unmodified 1537.8464 0.84640648 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 66.916 66.916 3 2.1402E-06 20821 TMT1-5 102.29 67.762 61.576 72.702 48.934 35.36 56.976 60.202 58 73 51 36 58 58 1 1 1 1 1 1 27863 12058 1833 11936 18672 24372 24372 1 LLDAQLSTGGIVDPSK Unmodified 1612.8672 0.8672015 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 67.302 67.302 3 0.00053909 20979 TMT1-5 70.334 49.084 99.696 153.91 65.592 82.091 76.543 98.02 94 152 73 80 80 94 1 1 1 1 1 1 22462 12059 1833 11937 18673 24373 24373 1 LLDAVDTYIPVPAR Unmodified 1541.8453 0.84534384 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 6 0 2 76.372 76.372 2;3 1.4533E-14 24564 TMT1-5 131.13 99.534 207.27 282.61 270.87 219.05 221.94 341.18 196 283 276 219 233 326 4 4 4 4 4 4 85104 12060 1180 11938 18674;18675 24374;24375;24376;24377 24375 4 LLDDAMAADKSDEWFAK Unmodified 1924.8877 0.88767894 2688 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 1 6 0 1 71.448 71.448 3 4.3961E-07 22579 TMT1-5 93.51 69.469 53.749 111.19 69.464 57.906 71.645 59.784 51 109 73 58 73 58 1 1 1 1 1 1 8361.8 12061 2688 11939 18676 24378 24378 1 LLDDLFR Unmodified 890.48617 0.48616764 2897 Q9UKV3-5;Q9UKV3;Q9UKV3-3;Q9UKV3-2 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 6 0 1 73.585 73.585 2 0.022657 23392 TMT1-5 95.541 21.567 92.258 139.52 65.451 105.48 112.1 127.92 87 138 73 102 116 123 2 2 2 2 2 2 14297 12062 2897 11940 18677 24379;24380 24379 2 LLDEAIQAVK Unmodified 1098.6285 0.62847478 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 6 0 1 69.254 69.254 2 3.5623E-06 21715 TMT1-5 154.84 73.245 122.69 198.07 131.66 115.73 170.48 180.62 116 196 138 116 174 174 1 1 1 1 1 1 21850 12063 2444 11941 18678 24381 24381 1 LLDEDEIR Unmodified 1001.5029 0.50293991 197 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 0 0 2 0 1 51.932 51.932 2 0.0015478 15660 TMT1-1 141.39 90.423 92.471 92.622 69.322 81.716 84.659 75.402 87 94 73 80 87 73 1 1 1 1 1 1 11557 12064 197 11942 18679 24382 24382 1 LLDEEEATDNDLR Unmodified 1531.7002 0.70019575 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 2 0 1 53.944 53.944 2 9.1268E-11 16447 TMT1-1 142.71 104.98 122.7 174.36 149.69 82.919 172.8 157.1 116 174 152 87 174 152 1 1 1 1 1 1 23566 12065 2267 11943 18680 24383 24383 1 LLDEELYSR Unmodified 1136.5714 0.57135383 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 3.5 0.5 1 1 57.671 57.671 2 0.00021716 18387 TMT1-2 145.17 99.683 301.36 368.03 254.97 280.22 332.45 361.48 284 369 269 276 342 348 3 3 3 3 3 3 68401 12066 1081 11944 18681;18682 24384;24385;24386 24385 3 LLDEIESLTLR Unmodified 1300.7238 0.72383172 253 O75154-2;O75154;O75154-3 RAB11FIP3 Rab11 family-interacting protein 3 yes no 0 0 0 0 0 5 0 1 83.629 83.629 2 0.00026003 27159 TMT1-4 105.4 61.048 30.676 35.499 44.065 28.259 43.157 45.672 29 36 44 29 44 44 1 1 1 1 1 1 5095.8 12067 253 11945 18683 24387 24387 1 LLDENKDSLINFK Unmodified 1547.8195 0.81952302 2002 Q66K14-2;Q66K14 TBC1D9B TBC1 domain family member 9B yes no 0 0 0 0 1 7 0 1 64.576 64.576 3 0.005061 19299 TMT1-6 66.215 26.791 107.94 161.01 116.91 134 117.57 143.75 102 160 123 131 123 138 1 1 1 1 1 1 9445.1 12068 2002 11946 18684 24388 24388 1 LLDEVFFSEK Unmodified 1225.6231 0.62305505 893 P25789 PSMA4 Proteasome subunit alpha type-4 yes yes 0 0 0 0 0 6 0 1 77.234 77.234 2 1.3473E-05 24918 TMT1-5 152.97 102.06 208.05 214.63 197.18 191.72 165.12 235.14 196 218 203 189 174 225 2 2 2 2 2 2 35601 12069 893 11947 18685 24389;24390 24390 2 LLDEWFTLDEVPK Unmodified 1603.8134 0.81337501 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 6 0 1 86.708 86.708 3 2.1401E-06 28492 TMT1-5 113.77 76.174 84.943 86.611 77.336 80.804 107.74 74.744 80 88 80 80 109 73 2 2 2 2 2 2 16446 12070 3 11948 18686 24391;24392 24391 2 LLDFGSLSNLQVTQPTVGMNFK Unmodified 2408.241 0.24098191 576 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 0 9 0 1 86.43 86.43 3 1.7204E-41 26069 TMT1-8 150.23 124.36 77.998 32.575 28.076 21.417 50.801 45.454 73 36 29 22 51 44 1 1 1 1 1 1 15350 12071 576 11949 18687 24393 24393 1 LLDFLNVK Unmodified 960.56442 0.56441796 2218 Q8NDZ4 C3orf58 Deleted in autism protein 1 yes yes 0 0 0 0 0 9 0 1 78.485 78.485 2 0.0044452 22981 TMT1-8 94.302 36.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12072 2218 11950 18688 24394 24394 1 LLDGWWVIR Unmodified 1156.6393 0.63931423 17 P14598;A6NI72;A8MVU1 NCF1;NCF1B;NCF1C Neutrophil cytosol factor 1;Putative neutrophil cytosol factor 1B;Putative neutrophil cytosol factor 1C yes no 0 0 0 0 0 9 0 1 81.959 81.959 2 0.0029702 24338 TMT1-8 90.657 45.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12073 17 11951 18689 24395 24395 1 LLDIACWIHHK Unmodified 1404.7336 0.73362533 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 9 0 1 65.196 65.196 4 0.00044895 17817 TMT1-8 81.865 60.912 145.29 299.44 213.84 244.84 251.64 294.5 138 294 225 240 261 283 2 2 2 2 2 2 33353 12074 533 11952 18690 24396;24397 24397 2 LLDLENIQIPDAPPPIPK Unmodified 1982.1088 0.10882875 2301 Q92556;Q92556-3;Q92556-2 ELMO1 Engulfment and cell motility protein 1 yes no 0 0 0 0 0 7 0 1 84.101 84.101 3 9.7865E-08 26914 TMT1-6 71.601 51.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12075 2301 11953 18691 24398 24398 1 LLDLSGNNLTHLPK Unmodified 1533.8515 0.85149185 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 1 63.253 63.253 3 4.4778E-06 18830 TMT1-7 81.789 50.562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12076 1067 11954 18692 24399 24399 1 LLDLSSNQLIDENQLYLIAHLPR Unmodified 2677.4439 0.44391548 1876 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 0 7 0 1 84.559 84.559 3 3.5472E-09 27104 TMT1-6 82.635 68.619 0 23.038 22.152 6.0454 15.171 7.0291 0 22 22 7 15 7 0 1 1 1 1 1 3744.5 12077 1876 11955 18693 24400 24400 1 LLDLVFLLDGSSR Unmodified 1446.8082 0.80823006 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8.5 0.5 1 1 97.598 97.598 2;3 1.2081E-08 29993 TMT1-8 113.77 74.474 115.5 175.63 102.74 109.17 146.43 219.88 109 174 109 108 152 210 2 3 2 3 3 2 23915 12078 471 11956 18694;18695 24401;24402;24403 24402 3 LLDLVQQSCNYK Unmodified 1479.7392 0.73916421 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 67.661 67.661 2 2.6047E-18 20553 TMT1-7 183 136.84 37.875 74.052 63.795 42.669 86.198 82.82 36 73 65 44 87 80 1 1 1 1 1 1 15408 12079 1323 11957 18696 24404 24404 1 LLDMDGIIVEK Unmodified 1244.6686 0.66862503 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 6 0 1 73.723 73.723 2 0.0077402 23486 TMT1-5 81.525 49.11 69.051 72.088 55.477 58.495 84.664 106.32 65 73 58 58 87 102 1 1 1 1 1 1 6487.7 12080 1754 11958 18697 24405 24405 1 LLDNWDSVTSTFSK Unmodified 1611.7781 0.77805214 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 8 0 1 76.084 76.084 3 1.8281E-07 23836 TMT1-7 108.89 59.773 107.51 151.17 197.78 105.13 117.83 174.66 102 152 196 109 123 167 2 2 2 2 2 2 31950 12081 431 11959 18698 24406;24407 24406 2 LLDPEDISVDHPDEK Unmodified 1720.8156 0.81555986 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 58.168 58.168 3 0.0061297 17494 TMT1-3 40.547 27.707 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12082 1546 11960 18699 24408 24408 1 LLDPEDVDVPQPDEK Unmodified 1707.8203 0.82031089 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.67 0.471 1 2 65.455 65.455 3;4 6.9893E-06 20940 TMT1-1 97.223 68.237 160.73 269.37 168.65 156.54 208.25 244.57 152 266 178 156 214 235 4 4 4 4 4 4 45320 12083 1833 11961 18700;18701;18702 24409;24410;24411;24412 24409 4 LLDPIREK Unmodified 982.58113 0.58113065 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 6 0 1 48.55 48.55 3 0.033264 13566 TMT1-5 64.04 15.757 312.54 412.99 321.37 306.79 278.18 383.28 295 413 334 303 292 367 1 1 1 1 1 1 15849 12084 1297 11962 18703 24413 24413 1 LLDPQTNTEIANYPIYK Unmodified 1992.0204 0.020407676 3004 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3;Q9Y3P9-4 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 6 0 1 69.368 69.368 3 0.0077699 21850 TMT1-5 50.827 25.773 30.668 59.221 25.296 53.302 49.628 36.96 29 58 29 51 51 36 1 1 1 1 1 1 8308.7 12085 3004 11963 18704 24414 24414 1 LLDQQNPDEDFS Unmodified 1419.6154 0.61540349 1126 P46108 CRK Adapter molecule crk yes yes 0 0 0 0 0 2 0 1 64.616 64.616 2 0.0036289 20612 TMT1-1 61.353 46.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12086 1126 11964 18705 24415 24415 1 LLDSDQELYR Unmodified 1250.6143 0.61428128 881 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 0 0 3 0 1 55.402 55.402 3 0.00047568 17389 TMT1-2 68.893 49.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12087 881 11965 18706 24416 24416 1 LLDSLEPPGEPGPSTNIPENDTVDGR Unmodified 2718.2984 0.29843303 2313 Q92734-4;Q92734-3;Q92734-2;Q92734 TFG Protein TFG yes no 0 0 0 0 0 3 0 1 69.075 69.075 3 0.00090613 22748 TMT1-2 35.464 28.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12088 2313 11966 18707 24417 24417 1 LLDSSTVTHLFK Unmodified 1359.7398 0.73981614 1361 P60900;P60900-2 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 0 8.5 0.5 1 1 65.827 65.827 2;3 6.44E-12 19877 TMT1-7 137.89 95.559 169.7 201.85 161.58 138.05 167.81 228.67 160 203 167 138 174 219 1 1 1 1 1 1 22079 12089 1361 11967 18708;18709 24418;24419 24418 2 LLDSVEQDFHLEIAK Unmodified 1755.9043 0.90431529 2013 Q6IBS0;Q9NR96-4 TWF2 Twinfilin-2 yes no 0 0 0 0 0 5.6 0.8 3 1 1 75.831 75.831 3;4 5.1539E-23 24167 TMT1-4 138.91 97.351 208.02 253.38 170.38 231.13 246.52 248.81 196 254 182 225 254 240 2 2 2 2 2 2 40128 12090 2013 11968 18710;18711;18712;18713;18714 24420;24421;24422;24423;24424 24421 5 LLDSWFTSTQEK Unmodified 1453.7089 0.70890994 2184 Q8N5M9 JAGN1 Protein jagunal homolog 1 yes yes 0 0 0 0 0 8 0 1 73.652 73.652 3 0.038798 22877 TMT1-7 45.28 32.08 30.731 44.288 27.275 28.979 58.076 36.719 29 44 29 29 58 36 1 1 1 1 1 1 6661.2 12091 2184 11969 18715 24425 24425 1 LLDTAFDLDVFK Unmodified 1395.7286 0.72858275 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 87.687 87.687 3 0.00014526 28149 TMT1-6 95.477 72.56 115.34 152.63 142.68 124.64 126.89 128.56 109 153 146 124 131 124 3 3 3 3 3 3 20196 12092 1566 11970 18716;18717 24426;24427;24428 24427 3 LLDTSTYK Unmodified 939.49131 0.49131259 1832 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 0 7 0 1 53.28 53.28 3 0.0024613 14808 TMT1-6 96.253 61.153 99.778 107.73 90.811 88.24 76.517 90.559 94 109 94 87 80 87 1 1 1 1 1 1 5170.2 12093 1832 11971 18718 24429 24429 1 LLDTVDDMLANDIAR Unmodified 1673.8294 0.82943578 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 84.875 84.875 3 4.366E-19 27913 TMT1-3 158.81 124.54 54.304 57.461 35.221 37.987 64.185 59.996 51 58 36 37 65 58 2 3 2 2 3 3 14814 12094 2654 11972 18719 24430;24431;24432 24431 3 LLDVDNR Unmodified 843.44503 0.4450311 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 4 0 1 46.659 46.659 2 0.0038643 12907 TMT1-3 138.37 57.267 430.08 588.3 434.77 353.39 579.57 499.41 406 587 451 357 586 484 1 1 1 1 1 1 125030 12095 390 11973 18720 24433 24433 1 LLDVVHPAAK Unmodified 1061.6233 0.62332982 2496 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 7 0 1 51.014 51.014 3 0.0098897 13872 TMT1-6 64.297 42.834 471.27 613.82 524.25 443.14 579.95 733.91 445 615 539 444 598 704 2 2 2 2 2 2 114230 12096 2496 11974 18721 24434;24435 24434 2 LLDYLQENPK Unmodified 1231.6449 0.64485312 381 O95999 BCL10 B-cell lymphoma/leukemia 10 yes yes 0 0 0 0 0 6 0 1 65.859 65.859 3 0.00033364 20401 TMT1-5 72.2 37.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12097 381 11975 18722 24436 24436 1 LLDYSLHK Unmodified 987.53893 0.53893149 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 0 8 1 1 1 52.786 52.786 3 3.354E-05 14626 TMT1-6 121.96 66.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12098 2528 11976 18723;18724 24437;24438 24437 2 LLEAAAQSTK Unmodified 1030.5659 0.56587452 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6.5 0.5 1 1 50.834 50.834 3 0.0025545 14321 TMT1-5 79.693 52.578 216.1 298.9 215.25 206.05 217.86 233.63 204 298 225 204 225 225 2 2 2 2 2 2 31121 12099 1833 11977 18725;18726 24439;24440 24439 2 LLEAGNFICQALNR Unmodified 1617.8297 0.82971055 1032 P35914;P35914-3;P35914-2 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes no 0 0 0 0 0 9 0 1 76.347 76.347 3 5.4186E-05 22148 TMT1-8 83.243 61.587 30.551 43.786 58.009 44.127 27.016 37.605 29 44 58 44 29 36 1 1 1 1 1 1 10208 12100 1032 11978 18727 24441 24441 1 LLEAHEEQNVDSYTESVK Unmodified 2089.9804 0.98039335 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 4 0 1 52.316 52.316 3 1.5476E-14 15190 TMT1-3 99.021 88.554 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12101 1304 11979 18728 24442 24442 1 LLEALQLSLPAEAQSK Unmodified 1709.9564 0.95635086 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 8 0 2 80.293 80.293 3;4 4.5341E-16 25486 TMT1-7 134.37 104.44 153.16 217.89 223.27 142.17 159.78 243.82 145 218 225 145 167 233 3 3 3 3 3 3 21370 12102 161 11980 18729;18730 24443;24444;24445 24445 3 LLEAQIATGGIIDPEESHR Unmodified 2048.0538 0.05383307 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 62.6 62.6 3 1.3653E-06 19240 TMT1-3 81.031 62.892 38.245 43.782 27.255 29.267 42.854 53.143 36 44 29 29 44 51 1 1 1 1 1 1 12403 12103 1833 11981 18731 24446 24446 1 LLEAQIATGGVIDPVHSHR Unmodified 2012.0803 0.080322592 1833;1346 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;P58107 PLEC;EPPK1 Plectin;Epiplakin no no 0 0 0 0 0 6 0 1 54.217 54.217 4 0.0039583 15774 TMT1-5 49.188 38.372 61.18 110.45 83.595 80.89 83.377 113.81 58 109 87 80 87 109 1 1 1 1 1 1 19209 12104 1833;1346 11982 18732 24447 24447 1 LLEAQLFAGGIVDPR Unmodified 1597.8828 0.88279198 2935 Q9UPN3;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 7 0 1 77.329 77.329 3 0.002173 24255 TMT1-6 48.216 22.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12105 2935 11983 18733 24448 24448 1 LLEATELK Unmodified 915.5277 0.5276981 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5 0 1 58.092 58.092 2 0.011062 17149 TMT1-4 98.392 34.906 108.25 114.38 104.53 134.58 125.91 143.51 102 116 109 131 131 138 1 1 1 1 1 1 11327 12106 1737 11984 18734 24449 24449 1 LLEATGK Unmodified 730.4225 0.42250475 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 6 0 1 47.377 47.377 2 0.0079971 13110 TMT1-5 76.774 32.354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12107 1633 11985 18735 24450 24450 1 LLEEALLR Unmodified 955.57023 0.57023162 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 5 0 1 65.069 65.069 2 0.0087601 19898 TMT1-4 101.41 40.822 108.38 122.31 75.086 80.57 127.34 174.39 102 123 80 80 131 167 1 1 1 1 1 1 15110 12108 1507 11986 18736 24451 24451 1 LLEEHAK Unmodified 838.45487 0.45486751 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 4.67 0.471 1 2 36.468 36.468 2;3 0.0016216 8878 TMT1-3 116.88 64.247 560.42 845.78 673.36 586.79 779.91 901.97 530 841 696 587 801 867 4 4 4 4 4 4 179450 12109 1244 11987 18737;18738;18739 24452;24453;24454;24455 24452 4 LLEEHSR Unmodified 882.45593 0.45593014 943 P30038-2;P30038-3;P30038 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes no 0 0 0 0 0 3 0 1 29.388 29.388 3 0.0019987 7099 TMT1-2 74.127 35.805 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12110 943 11988 18740 24456 24456 1 LLEELEEGQK Unmodified 1186.6081 0.60813326 1697;1877 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 0 3 0.816 1 1 1 64.868 64.868 3 6.0943E-05 21157 TMT1-2 123.6 69.18 583.55 957.26 658.03 535.33 716.97 823.81 552 947 686 538 736 792 6 6 6 6 6 6 132580 12111 1697;1877 11989 18741;18742;18743 24457;24458;24459;24460;24461;24462 24460 6 LLEETLAPFR Unmodified 1187.655 0.65502388 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 6 0 1 70.553 70.553 2 0.0044757 22307 TMT1-5 92.838 52.793 54.034 80.684 47.423 59.394 62.394 83.5 51 80 51 58 65 80 1 1 1 1 1 1 11277 12112 1275 11990 18744 24463 24463 1 LLEFELAQLTK Unmodified 1303.7388 0.73875351 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 7 0 1 81.826 81.826 3 3.6624E-05 25993 TMT1-6 108.9 77.373 77.656 86.668 39.705 51.901 78.444 83.042 73 87 44 51 80 80 1 1 1 1 1 1 12188 12113 1708 11991 18745 24464 24464 1 LLEFLLK Unmodified 874.55279 0.55279064 3096 yes no 0 0 0 0 0 9 0 1 81.398 81.398 2 0.014056 24078 TMT1-8 105.39 0 61.7 56.857 41.56 52.204 56.458 52.755 58 58 44 51 58 51 1 1 1 1 1 1 5639 + 12114 3096 11992 18746 24465 24465 1 LLEFNQGK Unmodified 947.50763 0.50763136 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 7 0 1 56.465 56.465 2 0.00712 16047 TMT1-6 103.56 21.921 239.7 294.03 220.52 164.57 256.27 236.8 226 295 228 167 260 229 1 1 1 1 1 1 26687 12115 1084 11993 18747 24466 24466 1 LLEFQLALK Unmodified 1073.6485 0.64848194 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 9 0 1 76.308 76.308 2 0.00015462 22128 TMT1-8 147.51 91.497 85.05 85.83 60.027 106.07 97.925 113.4 80 87 65 102 102 109 1 1 1 1 1 1 11819 12116 986 11994 18748 24467 24467 1 LLEGCLVGGR Unmodified 1072.5699 0.56991404 1206 P49821-2;P49821 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 0 6 0 1 55.298 55.298 2 0.02369 16250 TMT1-5 73.985 56.62 130.34 166.65 134.59 91.34 179.74 156.9 123 167 138 94 181 152 1 1 1 1 1 1 14727 12117 1206 11995 18749 24468 24468 1 LLEGEEER Unmodified 973.47164 0.47163978 816;1577;429 P20700;Q03252;P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNB1;LMNB2;LMNA Lamin-B1;Lamin-B2;Prelamin-A/C;Lamin-A/C no no 0 0 0 0 0 2 0 1 40.719 40.719 2 0.0004234 11209 TMT1-1 151.56 60.785 283.18 554.37 447.31 401.44 425.65 500.6 269 546 462 399 441 481 2 2 2 2 2 2 91977 12118 816;1577;429 11996 18750 24469;24470 24469 2 LLEGEESR Unmodified 931.46108 0.4610751 575 P08670;P17661;P41219-2;P41219;P05787-2;P05787;CON__Q9DCV7;CON__P08729;P08729;CON__P05787;CON__Q3KNV1;CON__Q6ISB0;CON__Q9H552;Q9NSB2;CON__Q9NSB2 VIM;DES;PRPH;KRT8;KRT7;KRT84 Vimentin;Desmin;Peripherin;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4 yes no 0 0 0 0 0 2 0.816 1 1 1 39.764 39.764 2 3.601E-19 10948 TMT1-1 203.07 103.93 1075 1802.5 1197 1014.1 1563.6 1573.6 1017 1781 1253 1020 1591 1518 4 4 4 4 4 4 314290 12119 575 11997 18751;18752;18753 24471;24472;24473;24474 24473 4 LLEIQADYHR Unmodified 1256.6513 0.65133548 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 5 0 1 49.258 49.258 3 0.00016796 13686 TMT1-4 104.43 66.878 61.129 110.31 92.299 55.722 115.45 96.91 58 109 94 58 116 94 1 1 1 1 1 1 14485 12120 3003 11998 18754 24475 24475 1 LLELFPVNR Unmodified 1099.639 0.63897988 3055 Q9Y6E2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes yes 0 0 0 0 0 9 0 1 73.571 73.571 2 0.02025 21041 TMT1-8 74.301 43.731 77.617 94.114 39.97 35.919 55.631 98.617 73 94 44 36 58 94 1 1 1 1 1 1 11188 12121 3055 11999 18755 24476 24476 1 LLELGPKPEVAQQTR Unmodified 1677.9414 0.94136949 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 7 0 1 54.173 54.173 3 0.00011291 15138 TMT1-6 85.176 58.741 199.48 364.36 249.29 205.79 297.93 278.25 189 359 260 207 303 269 1 1 1 1 1 1 29021 12122 1287 12000 18756 24477 24477 1 LLELIEGFMLSK Unmodified 1391.7734 0.77342445 363 O95671-3;O95671;O95671-2 ASMTL N-acetylserotonin O-methyltransferase-like protein yes no 0 0 0 0 0 9 0 1 106.44 106.44 3 0.030098 33267 TMT1-8 43.382 15.055 15.803 53.132 3.9949 6.9954 22.2 14.291 15 51 7 7 22 14 1 1 1 1 1 1 836.38 12123 363 12001 18757 24478 24478 1 LLELLPGK Unmodified 881.5586 0.5586043 2187 Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 0 8 0 1 71.097 71.097 2 0.0015257 21918 TMT1-7 87.323 58.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12124 2187 12002 18758 24479 24479 1 LLEMNLMHAPQVADAILGNQMFTHYDR Unmodified 3127.5042 0.50416602 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 0 1 80.837 80.837 4 0.0086516 25687 TMT1-7 37.689 33.409 200.91 153.55 187.81 120.84 186.21 172.71 189 160 188 124 189 167 2 2 2 2 2 2 9421.4 12125 1540 12003 18759 24480;24481 24480 2 LLEPLDYETVIEELEK Unmodified 1931.9979 0.9979409 2375 Q96BY6;Q96BY6-3;Q96BY6-2 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 4.5 0.5 1 1 93.049 93.049 3 1.5216E-07 30648 TMT1-3 103.39 85.249 49.906 50.134 45.767 41.014 56.973 52.74 47 51 47 41 58 51 3 3 3 3 3 3 6593.7 12126 2375 12004 18760;18761 24482;24483;24484 24482 3 LLEQAGSLK Unmodified 957.5495 0.54949617 2973 Q9Y2S2-2;Q9Y2S2 CRYL1 Lambda-crystallin homolog yes no 0 0 0 0 0 7 0 1 54.313 54.313 2 0.0021152 15217 TMT1-6 105.98 59.549 92.298 100.77 91.634 79.976 106.45 113.16 87 102 94 80 109 109 1 1 1 1 1 1 11421 12127 2973 12005 18762 24485 24485 1 LLEQALVIEEQLR Unmodified 1552.8825 0.88245763 1800 Q14839;Q14839-2;Q8TDI0;Q12873-2;Q12873;Q12873-3 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 0 0 5 0 1 81.523 81.523 3 0.015182 26393 TMT1-4 52.5 36.61 0 15.96 0 15.976 22.278 0 0 15 0 15 22 0 0 1 0 1 1 0 2921.7 12128 1800 12006 18763 24486 24486 1 LLEQWEKDDDIEEGDLPEHK Unmodified 2437.1285 0.12851416 1791 Q14696 MESDC2 LDLR chaperone MESD yes yes 0 0 0 0 1 4 0 1 60.983 60.983 4 9.9363E-10 18618 TMT1-3 93.269 74.709 122.26 231.44 174.21 160.1 233.57 264.1 116 228 181 160 239 254 1 1 1 1 1 1 29171 12129 1791 12007 18764 24487 24487 1 LLEQYKEESK Unmodified 1265.6503 0.65033243 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 5.5 0.5 1 1 48.625 48.625 3 2.6552E-07 13503 TMT1-5 164.65 124.27 684.05 1032.5 654.97 661.31 885.95 912.8 646 1024 693 656 906 880 2 2 2 2 2 2 86181 12130 1545 12008 18765;18766 24488;24489 24489 2 LLESLGYSLYASLGTADFYTEHGVK Unmodified 2733.3538 0.35376306 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 90.666 90.666 4 0.038523 29300 TMT1-7 26.849 19.737 15.919 0 29.635 37.334 13.183 23.076 15 0 29 36 15 22 1 0 1 1 1 1 2196 12131 917 12009 18767 24490 24490 1 LLETCSIALVGK Unmodified 1302.7217 0.72172323 763 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 0 8 0 1 67.602 67.602 3 0.00015971 20532 TMT1-7 94.465 66.604 77.477 86.171 70.129 74.005 85.306 66.856 73 87 73 73 87 65 1 1 1 1 1 1 5469.3 12132 763 12010 18768 24491 24491 1 LLETECPQYIR Unmodified 1420.7021 0.70205043 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 3.33 1.7 1 1 1 54.669 54.669 2;3 2.7428E-54 16100 TMT1-3 240.13 179.54 889.9 1450.1 871.12 955.58 1175.5 1408.8 841 1433 929 942 1212 1353 4 4 4 4 4 4 332150 12133 486 12011 18769;18770;18771 24492;24493;24494;24495;24496 24493 5 LLETIDQLYLEYAK Unmodified 1710.908 0.90800368 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 7.17 1.07 2 2 1 1 95.82 95.82 2;3 5.5876E-18 31714 TMT1-5 156.51 129.93 1690.7 2025 1951.2 1493.3 1823.8 2005.3 1596 2041 1985 1504 1875 1930 9 9 9 9 9 9 495370 12134 672 12012 18772;18773;18774;18775;18776;18777 24497;24498;24499;24500;24501;24502;24503;24504;24505;24506 24499 10 LLETTDRPDGHQNNLR Unmodified 1877.9344 0.93438664 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 1 4 0 1 35.766 35.766 4 1.4396E-06 8679 TMT1-3 95.582 65.475 177.28 195.06 155.06 122.54 141.35 197.44 167 197 160 123 147 189 1 1 1 1 1 1 28687 12135 1803 12013 18778 24507 24507 1 LLEVDLK Unmodified 828.49567 0.49566969 1687 Q13247;Q13247-3;Q13247-2 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 0 6 0 2 62.875 62.875 2 0.0089004 19078 TMT1-5 114.6 0 350.72 517.02 309.11 364.6 323.43 450.22 331 513 331 356 340 431 2 2 2 2 2 2 27130 12136 1687 12014 18779;18780 24508;24509 24508 2 LLEVEHPAAK Unmodified 1105.6132 0.61315906 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 5 0 1 43.913 43.913 3 0.0098897 11560 TMT1-4 64.297 39.832 795.45 986.87 1086.9 778.37 847.91 1163.3 752 995 1095 786 883 1114 1 1 1 1 1 1 106970 12137 770 12015 18781 24510 24510 1 LLEVLSGER Unmodified 1014.571 0.5709599 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 64.85 64.85 2 0.0011807 19990 TMT1-5 123.16 59.945 145.95 212.77 177.07 191.29 251.7 273.18 138 212 184 189 258 263 1 1 1 1 1 1 20393 12138 1546 12016 18782 24511 24511 1 LLEVQGSRPGK Unmodified 1182.6721 0.67207093 1413 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 0 0 0 0 1 7 0 1 42.096 42.096 3 0.02365 10413 TMT1-6 58.674 26.831 517.42 716.64 615.76 528.41 696.07 802.02 489 716 633 529 715 771 1 1 1 1 1 1 31910 12139 1413 12017 18783 24512 24512 1 LLEVQSQVEELQK Unmodified 1541.8301 0.83008771 2118 Q86VS8 HOOK3 Protein Hook homolog 3 yes yes 0 0 0 0 0 5 0 1 65.261 65.261 3 1.3379E-11 19906 TMT1-4 145.71 118.3 46.382 80.806 70.993 65.35 77.826 83.059 44 80 73 65 80 80 1 1 1 1 1 1 15573 12140 2118 12018 18784 24513 24513 1 LLEVSDDPQVLAVAAHDVGEYVR Unmodified 2494.2704 0.27036779 2874 Q9UI12-2;Q9UI12 ATP6V1H V-type proton ATPase subunit H yes no 0 0 0 0 0 4 0 1 78.565 78.565 3 3.1599E-10 25474 TMT1-3 90.978 76.962 54.217 49.894 42.701 36.826 56.909 60.204 51 51 44 37 58 58 2 2 2 2 2 2 6725.1 12141 2874 12019 18785 24514;24515 24515 2 LLEYDTVTR Unmodified 1108.5764 0.57643921 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 4 0 1 53.498 53.498 2 0.0001989 15621 TMT1-3 146.03 124.88 176.83 239.13 193.81 237.87 220.8 318.83 167 239 203 232 232 305 2 2 2 2 2 2 30458 12142 2697 12020 18786 24516;24517 24516 2 LLFEDWTYDDFR Unmodified 1618.7304 0.73037367 2562 Q9BWS9-3;Q9BWS9;Q9BWS9-2 CHID1 Chitinase domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 83.517 83.517 3 0.020657 27327 TMT1-5 51.774 36.898 23.193 28.537 45.193 13.157 28.953 22.626 22 29 44 15 29 22 1 1 1 1 1 1 2064.9 12143 2562 12021 18787 24518 24518 1 LLFEGAGSNPGDK Unmodified 1303.6408 0.64083038 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 6 0 1 57.924 57.924 3 0.00017026 17285 TMT1-5 89.301 59.493 176.66 269.95 196.9 175.64 149.08 297.42 167 268 205 174 160 283 1 1 1 1 1 1 17388 12144 1391 12022 18788 24519 24519 1 LLFEYLTLFGIDDK Unmodified 1685.8916 0.89162533 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8.5 0.5 1 1 103.18 103.18 2;3 0.00028285 32210 TMT1-8 86.463 58.45 4.2445 12.299 10.913 5.1506 9.7937 12.513 4 12 11 5 10 12 1 2 2 1 2 2 2014.9 12145 664 12023 18789;18790 24520;24521 24521 2 LLFGSGLPPALF Unmodified 1230.7012 0.70124579 2351 Q969U7-2;Q969U7 PSMG2 Proteasome assembly chaperone 2 yes no 0 0 0 0 0 9 0 1 101.57 101.57 2 0.001625 31650 TMT1-8 78.324 48.514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12146 2351 12024 18791 24522 24522 1 LLFLLTALR Unmodified 1058.6852 0.68520179 2705 Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 RIC8A Synembryn-A yes no 0 0 0 0 0 9 0 1 91.218 91.218 2 0.018511 27905 TMT1-8 78.324 46.103 59.5 46.062 59.721 47.946 50.979 65.703 56 48 60 48 53 63 1 1 1 1 1 1 4664 12147 2705 12025 18792 24523 24523 1 LLFLTDSLSDFTSSLR Unmodified 1813.9462 0.9461801 2725 Q9NR97;Q9NR97-2 TLR8 Toll-like receptor 8 yes no 0 0 0 0 0 9 0 1 94.108 94.108 3 5.1692E-06 28964 TMT1-8 79.337 58.497 7.2771 30.135 13.765 13.927 29.467 6.6212 7 29 15 14 29 7 1 1 1 1 1 1 2464.6 12148 2725 12026 18793 24524 24524 1 LLFNDVQTLK Unmodified 1189.6707 0.67067394 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 68.179 68.179 2 0.012258 20838 TMT1-7 81.017 23.467 46.486 88.649 46.956 59.993 32.003 84.367 44 87 51 58 36 80 1 1 1 1 1 1 24922 12149 1833 12027 18794 24525 24525 1 LLFPAVDDNLLK Unmodified 1356.7653 0.76530261 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 7 0 1 79.418 79.418 3 0.00034538 25035 TMT1-6 88.441 58.752 30.678 35.504 43.735 35.65 58.026 29.258 29 36 44 36 58 29 1 1 1 1 1 1 5765.3 12150 1574 12028 18795 24526 24526 1 LLFSGASDNSIIMWDIGGR Unmodified 2051.0146 0.014610792 2140 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 86.347 86.347 3 0.0016407 26086 TMT1-8 49.528 19.394 15.826 29.451 20.226 38.861 19.928 37.807 15 29 22 37 22 36 1 1 1 1 1 1 4145.4 12151 2140 12029 18796 24527 24527 1 LLFSGGHWDGSLR Unmodified 1443.7259 0.72589741 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 60.141 60.141 3 4.173E-06 15749 TMT1-8 97.69 73.398 61.25 94.46 85.291 64.354 85.457 75.379 58 94 87 65 87 73 1 1 1 1 1 1 14066 12152 2061 12030 18797 24528 24528 1 LLFSHDLVSGR Unmodified 1242.6721 0.67207093 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 8 0 1 54.808 54.808 3 3.7296E-06 15461 TMT1-7 120.32 89.087 61.609 56.603 57.112 43.486 63.932 60.004 58 58 58 44 65 58 1 1 1 1 1 1 12304 12153 2594 12031 18798 24529 24529 1 LLGAYYHDGK Unmodified 1135.5662 0.56620887 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 7 0 1 47.858 47.858 3 0.00030877 12658 TMT1-6 102.06 66.55 129.9 211.85 169.07 130.9 117.2 158.69 123 210 174 131 123 152 1 1 1 1 1 1 19701 12154 325 12032 18799 24530 24530 1 LLGELLLDR Unmodified 1040.623 0.62299547 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 6.5 0.5 1 1 75.505 75.505 2 0.01314 24147 TMT1-5 84.615 0 146.72 127.49 119.82 109.45 135.17 120.86 138 131 123 109 138 117 2 2 2 2 2 2 28027 12155 2985 12033 18800;18801 24531;24532 24531 2 LLGELLQDNAK Unmodified 1212.6714 0.67140222 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 6.5 0.5 1 1 70.466 70.466 3 4.9274E-08 22247 TMT1-5 152.07 136.92 613.24 820.37 834.52 567.78 756.93 896.23 580 823 843 578 778 861 4 4 4 4 4 4 162170 12156 1053 12034 18802;18803 24533;24534;24535;24536 24534 4 LLGFGSALLDNVDPNPENFVGAGIIQTK Unmodified 2898.5127 0.51272332 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 8 0 2 94.517 94.517 4;5 6.2448E-13 30725 TMT1-7 91.175 81.589 61.807 34.49 42.485 37.272 33.854 60.862 58 37 43 37 36 58 2 2 2 2 2 2 18286 12157 369 12035 18804;18805 24537;24538 24537 2 LLGGLAVR Unmodified 797.51232 0.51232281 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 9 0 1 55.877 55.877 2 0.0073072 14080 TMT1-8 113.07 36.725 145.2 295.96 231.62 190.58 174.64 355.32 138 291 239 190 187 338 1 1 1 1 1 1 22671 12158 861 12036 18806 24539 24539 1 LLGGVTIAQGGVLPNIQAVLLPK Unmodified 2270.3726 0.37258843 732;2134 P16104;Q8IUE6 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 0 0 0 0 0 9 0 2 90.759 90.759 3;4 2.3431E-21 27699 TMT1-8 98.269 81.19 124.01 167.39 116.12 141.47 129.69 268.13 117 167 123 138 139 255 3 3 3 3 3 3 75559 12159 732;2134 12037 18807;18808 24540;24541;24542 24540 3 LLGHLVK Unmodified 778.50651 0.50650915 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 48.449 48.449 3 0.0036198 11145 TMT1-8 92.692 53.474 228.39 395.85 412.81 253.97 414.06 426.31 217 393 415 262 421 411 1 1 1 1 1 1 38864 12160 714 12038 18809 24543 24543 1 LLGHWEEAAHDLALACK Unmodified 1932.9516 0.9516166 1224 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 0 6.5 0.5 1 1 65.766 65.766 4 5.7379E-10 20379 TMT1-5 108.71 91.012 139.15 135.41 122.08 218.95 175.85 312.65 131 138 130 210 188 298 2 2 2 2 2 2 23866 12161 1224 12039 18810;18811 24544;24545 24544 2 LLGIITK Unmodified 756.51093 0.51092582 1254 P51790-4;P51790-5;P51790;P51793-2;P51793 CLCN3;CLCN4 H(+)/Cl(-) exchange transporter 3;H(+)/Cl(-) exchange transporter 4 no no 0 0 0 0 0 9 0 1 65.388 65.388 2 0.042023 17825 TMT1-8 83.614 12.702 129.9 243.14 143.39 131.01 193.02 204.49 123 239 152 131 197 197 1 1 1 1 1 1 15390 12162 1254 12040 18812 24546 24546 1 LLGLGQK Unmodified 727.45922 0.4592246 1175 P49321-2;P49321;P49321-3 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 0 9 0 1 54.81 54.81 2 0.027024 13603 TMT1-8 91.093 23.06 84.769 92.602 101.59 62.549 129.78 127.41 80 94 102 65 131 123 1 1 1 1 1 1 6011.5 12163 1175 12041 18813 24547 24547 1 LLGLLMPFR Unmodified 1058.6311 0.63105773 2811 Q9P0J1;Q9P0J1-2 PDP1 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial yes no 0 0 0 0 0 9 0 1 86.113 86.113 2 0.021293 25949 TMT1-8 72.234 25.668 23.012 59.333 49.512 44.771 19.657 37.815 22 58 51 44 22 36 1 1 1 1 1 1 2939 12164 2811 12042 18814 24548 24548 1 LLGNQATFSPIVTVEPR Unmodified 1841.0047 0.0046980325 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 8 0 1 69.973 69.973 3 2.0273E-05 21475 TMT1-7 63.46 33.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12165 736 12043 18815 24549 24549 1 LLGNVLVCVLAHHFGK Unmodified 1775.9869 0.9868799 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 9 0 1 76.721 76.721 4 9.9553E-12 22246 TMT1-8 113.72 90.243 5943.5 4109.3 4786.8 4795.7 1238.7 4116.7 5585 4314 4877 4670 1530 3895 8 8 8 8 8 8 607240 12166 1497 12044 18816 24550;24551;24552;24553;24554;24555;24556;24557 24550 8 LLGNVLVCVLAR Unmodified 1325.7853 0.78532654 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 9 0 2 81.536 81.536 2;3 1.0865E-06 24188 TMT1-8 116.73 79.385 317.02 406.13 331.51 306.39 151.2 273.91 299 407 343 301 167 261 2 3 3 3 3 3 48165 12167 428 12045 18817;18818 24558;24559;24560 24559 3 LLGPDAAINLTDPDGALAK Unmodified 1863.9942 0.99419293 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 6 0 2 75.411 75.411 2;3 9.6928E-14 24103 TMT1-5 114.34 107.3 146.12 234.83 129.64 133.27 116.48 206.68 138 232 139 131 124 197 3 3 3 3 3 3 34875 12168 1720 12046 18819;18820 24561;24562;24563 24561 3 LLGPGVNYSGCQITWAK Unmodified 1862.9349 0.93490391 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 9 0 1 69.12 69.12 3 0.00064725 19340 TMT1-8 58.357 40.201 91.945 138.65 118.73 125.14 117.97 143.74 87 138 123 123 123 138 1 1 1 1 1 1 6946.4 12169 1073 12047 18821 24564 24564 1 LLGPNASPDGLIPWTR Unmodified 1705.9152 0.91515474 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 9 0 1 75.105 75.105 3 0.00019038 21652 TMT1-8 65.105 44.974 61.663 64.308 41.498 43.555 109.74 66.158 58 65 44 44 109 65 1 1 1 1 1 1 11791 12170 1091 12048 18822 24565 24565 1 LLGPVDKGHDVTFYK Unmodified 1687.8934 0.89335667 2657 Q9H7M9 C10orf54 Platelet receptor Gi24 yes yes 0 0 0 0 1 8 0 1 55.549 55.549 4 5.8931E-08 15808 TMT1-7 112.72 95.095 258.61 307.77 277.04 259.45 204.69 423.76 244 310 285 256 221 403 1 1 1 1 1 1 21390 12171 2657 12049 18823 24566 24566 1 LLGPVLVK Unmodified 837.56878 0.56877505 134 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 0 0 9 0 1 64.563 64.563 2 0.02702 17592 TMT1-8 72.355 48.156 99.044 217.93 120.81 165.25 129.29 247.89 94 213 131 160 139 236 1 1 1 1 1 1 26564 12172 134 12050 18824 24567 24567 1 LLGQFSEK Unmodified 920.49673 0.49673232 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 7 0 1 56.784 56.784 2 0.030261 16174 TMT1-6 81.594 54.34 235.6 307.81 176.35 312.18 218.99 424.42 222 307 194 299 237 404 1 1 1 1 1 1 33196 12173 1279 12051 18825 24568 24568 1 LLGQFTLIGIPPAPR Unmodified 1591.945 0.94499831 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 9 0 2 81.384 81.384 2;3 4.6834E-11 24229 TMT1-8 113.1 80.845 176.83 256.38 180.36 176.46 216.03 326.43 167 255 189 175 225 312 5 5 5 5 5 5 22310 12174 1058 12052 18826;18827 24569;24570;24571;24572;24573 24571 5 LLGSALALAR Unmodified 983.61277 0.61276513 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 9 0 1 65.173 65.173 2 0.0075575 17726 TMT1-8 85.161 48.975 90.74 305.82 179.58 137.27 152.2 257.89 87 296 189 138 160 246 1 1 1 1 1 1 15972 12175 477 12053 18828 24574 24574 1 LLGSANVVPEALQR Unmodified 1465.8253 0.8252771 2256 Q8TDZ2-4;Q8TDZ2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 7 0 1 63.114 63.114 2 1.0256E-09 18703 TMT1-6 122.52 88.759 69.132 63.679 49.042 44.238 49.495 52.954 65 65 51 44 51 51 1 1 1 1 1 1 14000 12176 2256 12054 18829 24575 24575 1 LLGSTIPLCSAQWER Unmodified 1729.8821 0.88214006 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 8 0 1 69.738 69.738 3 9.0281E-05 21398 TMT1-7 81.632 62.675 46.802 43.119 32.354 84.749 40.56 45.747 44 44 36 80 44 44 1 1 1 1 1 1 12727 12177 1219 12055 18830 24576 24576 1 LLGTFFR Unmodified 852.48577 0.48577371 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 9 0 1 68.496 68.496 2 0.024789 19092 TMT1-8 92.319 30.825 46.776 34.413 44.061 27.978 58.122 36.717 44 36 44 29 58 36 1 1 1 1 1 1 4857.3 12178 1961 12056 18831 24577 24577 1 LLGTIYTAAEEIEAVGGK Unmodified 1833.9724 0.97239485 2057 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 0 0 6 0 2 93.038 93.038 3;4 5.9622E-11 30762 TMT1-5 115.26 96.663 39.157 97.518 55.123 59.871 70.748 83.261 37 95 59 59 73 80 2 3 3 3 3 3 6964.9 12179 2057 12057 18832;18833 24578;24579;24580 24579 3 LLGWIQNK Unmodified 970.56 0.56000128 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 5 4 1 1 68.659 68.659 2 1.7503E-05 19076 TMT1-8 164.1 91.313 7157.2 9025.6 8889.6 6345 8432.1 10298 6762 9076 9011 6435 8678 9886 5 5 5 5 5 5 1429900 12180 270;831;1771 12058 18834;18835 24581;24582;24583;24584;24585 24585 5 LLGYQGIAVVMEELLK Unmodified 1774.9903 0.99029352 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 8 0 1 102.77 102.77 3 1.1747E-06 33274 TMT1-7 95.854 54.762 6.3749 5.8598 5.642 10.468 6.7013 4.0728 6 6 6 10 7 4 1 1 1 1 1 1 1057 12181 2079;2399 12059 18836 24586 24586 1 LLGYVATLK Unmodified 976.59572 0.59571809 287 O75534-2;O75534;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 0 9 0 1 69.573 69.573 2 0.0018439 19497 TMT1-8 111.95 56.271 68.539 101.96 116.27 62.403 91.044 128.52 65 102 116 65 94 123 1 1 1 1 1 1 6396.6 12182 287 12060 18837 24587 24587 1 LLHDLQIGEK Unmodified 1164.6503 0.65027285 1198 P49756;P49756-2;P49756-3 RBM25 RNA-binding protein 25 yes no 0 0 0 0 0 6 0 1 55.759 55.759 3 0.0039957 16399 TMT1-5 75.566 49.627 138.97 158.64 133.58 123.83 140.81 150.55 131 160 138 123 145 145 1 1 1 1 1 1 13314 12183 1198 12061 18838 24588 24588 1 LLHDQVGVIQFGPYK Unmodified 1712.925 0.92499115 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 8 0 1 63.476 63.476 3 1.7674E-05 18855 TMT1-7 91.076 52.415 122.71 204.62 121.89 156.12 146.11 166.39 116 202 131 152 152 160 1 1 1 1 1 1 68087 12184 1287 12062 18839 24589 24589 1 LLHDSGLNVVVLEAR Unmodified 1633.9152 0.91515474 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 8 0 1 61.577 61.577 3 0.00030418 18145 TMT1-7 76.82 60.348 46.572 50.034 65.172 43.128 57.425 36.737 44 51 65 44 58 36 1 1 1 1 1 1 7808.5 12185 908 12063 18840 24590 24590 1 LLHEVQELTTEVEK Unmodified 1666.8778 0.87776618 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 4.33 0.471 2 1 69.398 69.398 3;4 1.8043E-17 21491 TMT1-4 151.99 132.25 191.8 246.6 196.04 175.99 191.54 187.48 181 247 203 175 197 181 3 3 3 3 3 3 54391 12186 1720 12064 18841;18842;18843 24591;24592;24593 24593 3 LLHFPDLAALPR Unmodified 1361.782 0.78195573 1774 Q14392 LRRC32 Leucine-rich repeat-containing protein 32 yes yes 0 0 0 0 0 9 0 1 68.195 68.195 3 0.0041704 18962 TMT1-8 60.305 35.168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12187 1774 12065 18844 24594 24594 1 LLHIEELR Unmodified 1021.592 0.59202969 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 5.5 0.5 1 1 50.056 50.056 3 0.00084609 14103 TMT1-4 125.58 60.546 139.05 151.3 126.72 117.68 141.06 151.61 131 153 131 117 145 146 2 2 2 2 2 2 28793 12188 2947 12066 18845;18846 24595;24596 24595 2 LLHILEFDSDR Unmodified 1356.7038 0.70376498 2965 Q9Y2G3 ATP11B Probable phospholipid-transporting ATPase IF yes yes 0 0 0 0 0 6 0 1 65.61 65.61 3 0.010516 20324 TMT1-5 61.435 45.182 30.711 28.041 44.513 28.232 43.159 45.672 29 29 44 29 44 44 1 1 1 1 1 1 6368.9 12189 2965 12067 18847 24597 24597 1 LLHIYQQSR Unmodified 1156.6353 0.63529149 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 8.5 0.5 1 1 42.122 42.122 3 0.0012246 10449 TMT1-7 95.311 47.568 169.65 201.71 170.32 136.21 237.55 210.69 160 203 175 138 240 204 2 2 2 2 2 2 40847 12190 2085 12068 18848;18849 24598;24599 24598 2 LLHNILPK Unmodified 946.59639 0.59638679 166 O43306-2;O43306;O95622-2;O95622 ADCY6;ADCY5 Adenylate cyclase type 6;Adenylate cyclase type 5 yes no 0 0 0 0 0 9 0 1 52.789 52.789 3 0.017817 12862 TMT1-8 54.611 28.506 84.774 101.25 93.377 41.042 78.943 83.027 80 102 94 44 80 80 1 1 1 1 1 1 9275.3 12191 166 12069 18850 24600 24600 1 LLHSFLAK Unmodified 927.55419 0.55418762 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 0 9 0 1 55.923 55.923 3 0.0017431 14127 TMT1-8 87.323 41.164 61.03 102.48 115.57 78.262 121.74 96.73 58 102 116 80 123 94 1 1 1 1 1 1 5676.1 12192 2980 12070 18851 24601 24601 1 LLHVAVSDVNDDVRR Unmodified 1706.9064 0.90638097 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 1 5 0 1 46.036 46.036 4 8.8587E-05 12442 TMT1-4 80.287 64.9 61.398 72.205 79.352 57.612 55.953 60.231 58 73 80 58 58 58 1 1 1 1 1 1 9519.4 12193 2465 12071 18852 24602 24602 1 LLIAAQK Unmodified 755.49052 0.49052473 280;330 O75477;O94905 ERLIN1;ERLIN2 Erlin-1;Erlin-2 no no 0 0 0 0 0 9 0 1 52.698 52.698 2 0.012014 12854 TMT1-8 114.6 54.955 234.14 312.18 239.25 108.85 195.51 222.55 221 312 244 116 199 214 1 1 1 1 1 1 19311 12194 280;330 12072 18853 24603 24603 1 LLIDEAILK Unmodified 1026.6325 0.63249752 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 6.5 0.5 1 1 72.813 72.813 2 0.000953 22519 TMT1-6 126.41 52.157 252.51 518.89 401.88 258.16 284.18 425.75 240 510 412 263 297 407 2 2 2 2 2 2 41074 12195 1186 12073 18854;18855 24604;24605 24605 2 LLIHQSLAGGIIGVK Unmodified 1517.9293 0.92934824 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 9 0 1 62.86 62.86 3 1.0219E-19 16920 TMT1-8 143.93 117.04 229.25 372.34 287.95 222.52 331.85 425.46 217 369 297 225 341 408 2 2 2 2 2 2 97559 12196 1409;1410 12074 18856 24606;24607 24607 2 LLILEYAR Unmodified 989.59097 0.59096706 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 8 0 1 68.604 68.604 2 0.02613 20925 TMT1-7 84.568 50.771 61.609 56.603 57.098 43.793 47.647 107.37 58 58 58 44 51 102 1 1 1 1 1 1 5976.1 12197 208 12075 18857 24608 24608 1 LLIQAGYDVNIK Unmodified 1345.7606 0.76055158 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 8 0 1 67.459 67.459 3 0.00043139 20483 TMT1-7 66.023 31.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12198 118 12076 18858 24609 24609 1 LLISLSQGNR Unmodified 1099.635 0.63495714 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 9 0 1 58.646 58.646 2 0.0063218 15234 TMT1-8 88.392 28.034 123.32 121.05 89.915 87.737 106.1 113.17 116 123 94 87 109 109 1 1 1 1 1 1 13654 12199 1234 12077 18859 24610 24610 1 LLIVSNPVDILTYVAWK Unmodified 1943.1132 0.11318585 385 P00338;P00338-3;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 9 0 1 101.1 101.1 3 1.0778E-35 31477 TMT1-8 161.8 0 373.86 422.18 287.49 465.05 513.82 558.85 352 425 310 450 530 538 4 4 4 4 4 4 83735 12200 385 12078 18860 24611;24612;24613;24614 24613 4 LLIVSTTPYSEK Unmodified 1349.7442 0.74423282 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 0 8 0 1 63.714 63.714 2 2.8275E-13 19019 TMT1-7 169.58 90.672 61.529 63.937 64.279 42.767 79.414 67.024 58 65 65 44 80 65 1 1 1 1 1 1 10211 12201 2949 12079 18861 24615 24615 1 LLIVSTTPYSEKDTK Unmodified 1693.9138 0.91381734 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 1 8 0 1 57.782 57.782 3 7.7468E-10 16679 TMT1-7 96.673 85.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12202 2949 12080 18862 24616 24616 1 LLIYGASSR Unmodified 978.54983 0.54983053 416 P01619 Ig kappa chain V-III region B6 yes yes 0 0 0 0 0 9 0 1 52.87 52.87 2 0.0043129 12929 TMT1-8 86.794 39.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12203 416 12081 18863 24617 24617 1 LLLAGYDDFNCNIWDAMK Oxidation (M) 2173.9813 0.98126175 1454 P62879;P62879-2 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 0 0 1 0 0 8 0 1 82.943 82.943 3 0.00011629 26528 TMT1-7 77.222 66.435 23.38 29.056 13.35 22.862 20.664 37.786 22 29 15 22 22 36 1 1 1 1 1 1 3559.9 12204 1454 12082 18864 24618 24618 234 1 LLLAGYDDFNCNIWDAMK Unmodified 2157.9863 0.98634713 1454 P62879;P62879-2 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 0 0 0 0 0 8 0 1 89.472 89.472 3 3.0096E-10 28917 TMT1-7 108.34 91.458 65.639 82.564 79.068 49.543 79.065 68.1 62 83 80 51 80 66 2 2 2 2 2 2 14970 12205 1454 12082 18865 24619;24620 24619 2 LLLAGYDDFNCNVWDALK Unmodified 2126.0143 0.014276441 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 0 7.5 0.5 1 1 89.742 89.742 3 3.268E-25 28995 TMT1-7 150.76 131.37 215.2 260.59 219.35 165.77 195.86 288.63 203 262 225 167 204 276 3 3 3 3 3 3 96669 12206 1453 12083 18866;18867 24621;24622;24623 24622 3 LLLAGYDDFNCNVWDTLK Unmodified 2156.0248 0.024841127 2674 Q9HAV0 GNB4 Guanine nucleotide-binding protein subunit beta-4 yes yes 0 0 0 0 0 7.5 0.5 1 1 88.063 88.063 3;4 1.5391E-14 28345 TMT1-7 125.52 105.15 31.365 112.58 76.71 65.936 86.688 67.882 30 109 80 66 88 66 2 3 3 3 3 3 11269 12207 2674 12084 18868;18869 24624;24625;24626 24625 3 LLLAGYDDFNCNVWDTLKGDR Unmodified 2484.1744 0.17435891 2674 Q9HAV0 GNB4 Guanine nucleotide-binding protein subunit beta-4 yes yes 0 0 0 0 1 8 0 1 81.821 81.821 3 5.3001E-14 26100 TMT1-7 113.49 94.376 54.132 80.955 30.773 68.439 41.053 53.195 51 80 36 65 44 51 1 1 1 1 1 1 13877 12208 2674 12085 18870 24627 24627 1 LLLAIVGQ Unmodified 825.53239 0.53238955 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 9 0 1 88.013 88.013 2 0.0011898 26675 TMT1-8 148.62 102.7 115.49 168.17 103.24 148.2 219.75 195.2 109 167 109 145 223 189 3 3 2 3 3 3 87155 12209 804 12086 18871 24628;24629;24630 24629 3 LLLALMESR Unmodified 1044.6002 0.60015154 1783 Q14573 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 0 0 0 0 0 9 0 1 76.743 76.743 2 0.0017752 22327 TMT1-8 114.99 0 61.572 64.055 57.049 34.876 56.998 60.202 58 65 58 36 58 58 1 1 1 1 1 1 8660.4 12210 1783 12087 18872 24631 24631 1 LLLATGLDGSYLLR Unmodified 1503.8661 0.86607929 244 O60880-3;O60880-6;O60880-2;O60880-5;O60880-4;O60880 SH2D1A SH2 domain-containing protein 1A yes no 0 0 0 0 0 9 0 1 80.291 80.291 2 6.7819E-29 23664 TMT1-8 185.99 122.57 39.202 58.495 34.288 21.475 28.057 37.575 37 58 36 22 29 36 1 1 1 1 1 1 11104 12211 244 12088 18873 24632 24632 1 LLLDGAPLIAIHK Unmodified 1372.8442 0.84422163 2614 Q9H0R4;Q9H0R4-2 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 0 0 0 0 0 9 0 1 70.411 70.411 3 1.2526E-09 19791 TMT1-8 116.54 70.908 108.16 169.18 72.573 73.885 83.956 106.34 102 167 80 73 87 102 1 1 1 1 1 1 25719 12212 2614 12089 18874 24633 24633 1 LLLDQEQK Unmodified 985.54441 0.5444108 314 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 0 5 0 1 52.619 52.619 2 0.022323 15032 TMT1-4 87.308 31.297 130.16 185.59 147.92 106.67 193.86 182.08 123 185 152 109 196 176 1 1 1 1 1 1 15542 12213 314 12090 18875 24634 24634 1 LLLDTLQLSK Unmodified 1142.6911 0.69107503 143 O15357;O15357-2 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 0 0 0 0 0 9 0 1 75.487 75.487 2 0.0011731 21817 TMT1-8 106.29 50.724 38.116 50.979 42.772 35.575 65.086 67.433 36 51 44 36 66 65 1 1 1 1 1 1 3388.7 12214 143 12091 18876 24635 24635 1 LLLEAQAATGFLLDPVK Unmodified 1798.024 0.024036491 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 91.398 91.398 3 3.9489E-06 29557 TMT1-7 89.358 71.869 30.769 35.759 28.105 21.839 28.297 30.107 29 36 29 22 29 29 1 1 1 1 1 1 5097.3 12215 1833 12092 18877 24636 24636 1 LLLEAQAATGFLLDPVKGER Unmodified 2140.1892 0.18920434 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 8 0 2 82.443 82.443 3;4 7.2636E-07 26368 TMT1-7 86.539 78.251 146.25 187.71 147.3 116.01 164.19 180.8 138 188 152 117 168 174 3 3 3 3 3 3 32979 12216 1833 12093 18878;18879 24637;24638;24639 24638 3 LLLEEALQDSPQTR Unmodified 1611.8468 0.84680041 2221 Q8NEU8-3;Q8NEU8 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 0 4.5 0.5 1 1 68.294 68.294 2 1.2658E-09 21435 TMT1-3 120.87 96.885 46.484 88.643 47.312 52.019 48.075 83.908 44 87 51 51 51 80 2 2 2 2 2 2 10380 12217 2221 12094 18880;18881 24640;24641 24640 2 LLLEGISSTHVNHLR Unmodified 1687.937 0.93695282 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 0 9 0 1 49.712 49.712 4 0.0017138 11693 TMT1-8 56.482 30.358 54.179 49.787 49.269 59.55 48.278 67.912 51 51 51 58 51 65 1 1 1 1 1 1 3115.8 12218 2723 12095 18882 24642 24642 1 LLLEGVENK Unmodified 1013.5757 0.57571092 997 P33121-2;P33121-3;P33121 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 0 0 0 0 0 6 0 1 60.436 60.436 2 0.0017644 18260 TMT1-5 113.66 38.279 139.51 112.65 82.044 103.9 143.6 96.106 131 116 87 102 145 94 1 1 1 1 1 1 8615.4 12219 997 12096 18883 24643 24643 1 LLLEIADNPEAVDVK Unmodified 1637.8876 0.88760259 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-4 ANKRD44 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B yes no 0 0 0 0 0 5 0 1 76.746 76.746 4 0.0012565 24495 TMT1-4 65.472 46.077 14.554 75.38 14.728 100.56 69.443 36.394 14 72 22 94 72 36 1 1 1 1 1 1 3653.8 12220 2192 12097 18884 24644 24644 1 LLLEVTYEAIVDGGINPDSLR Unmodified 2286.2107 0.21072764 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 6 0 1 100 100 3 0.046768 33271 TMT1-5 31.488 26.779 7.4403 6.8446 6.0826 23.419 14.079 15.588 7 7 7 22 15 15 1 1 1 1 1 1 1621.3 12221 1176 12098 18885 24645 24645 1 LLLEYTDSSYEEK Unmodified 1588.7508 0.75083434 591;927 P09488;P09488-2;Q03013-2;Q03013;Q03013-3;P28161;P28161-2 GSTM1;GSTM4;GSTM2 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 2 no no 0 0 0 0 0 4.5 0.5 1 1 66.47 66.47 2;3 6.1045E-05 20463 TMT1-4 103.91 78.296 54.17 81.062 24.23 45.147 79.817 52.088 51 80 29 44 80 51 1 1 1 1 1 1 6855.1 12222 591;927 12099 18886;18887 24646;24647 24647 2 LLLFGDSITQFSFQQGGWGASLADR Unmodified 2713.35 0.35001509 1921 Q2TAA2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes yes 0 0 0 0 0 9 0 1 93.69 93.69 3 2.8602E-07 28826 TMT1-8 62.237 44.179 7.3961 15.356 6.3035 7.0011 14.577 23.036 7 15 7 7 15 22 1 1 1 1 1 1 3659.6 12223 1921 12100 18888 24648 24648 1 LLLFLSTELQASQILQNK Unmodified 2058.1725 0.17249164 1945 Q52LJ0-1;Q52LJ0 FAM98B Protein FAM98B yes no 0 0 0 0 0 9 0 2 99.5 99.5 3;4 4.4139E-17 30828 TMT1-8 122.63 101.3 46.826 33.473 36.438 30.339 51.438 45.436 44 35 37 30 52 44 3 3 3 2 3 3 4435.3 12224 1945 12101 18889;18890 24649;24650;24651 24649 3 LLLGAGAVAYGVR Unmodified 1258.7398 0.73975656 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 9 0 1 65.062 65.062 3 6.5972E-12 17739 TMT1-8 129.89 96.092 68.638 93.605 106.67 119.18 66.718 90.838 65 94 109 116 72 87 1 1 1 1 1 1 14412 12225 2479 12102 18891 24652 24652 1 LLLGLVGDCLVEPFWPLGTGVAR Unmodified 2481.3454 0.3453874 2256 Q8TDZ2-4;Q8TDZ2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 9 0 1 104.14 104.14 3 0.00017407 32492 TMT1-8 52.769 39.114 7.4361 6.8328 6.8038 7.2455 0 0 7 7 7 7 0 0 1 1 1 1 0 0 2804.3 12226 2256 12103 18892 24653 24653 1 LLLHSNR Unmodified 851.49774 0.49773538 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 33.473 33.473 3 0.0013982 5915 TMT1-8 125.08 25.018 115.79 106.4 105.71 118.1 126.69 112.58 109 109 109 116 130 109 2 2 2 2 2 2 25368 12227 1067 12104 18893 24654;24655 24654 2 LLLIDWPELK Unmodified 1238.7275 0.72746054 16 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 86.24 86.24 2 0.00043119 25987 TMT1-8 113.22 30.214 23.171 36.029 42.63 36.308 26.569 61.07 22 36 43 36 29 58 1 1 1 1 1 1 2725.3 12228 16 12105 18894 24656 24656 1 LLLIGDSGVGK Unmodified 1070.6336 0.63356015 1444;1366;2616;1372;2333 P61026;P59190-2;P59190;P62820;P62820-2;P62820-3;Q9H0U4;Q92928;P61006;P61006-2;Q92930 RAB10;RAB15;RAB1A;RAB1B;RAB1C;RAB8A;RAB8B Ras-related protein Rab-10;Ras-related protein Rab-15;Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-8A;Ras-related protein Rab-8B no no 0 0 0 0 0 6.5 3.2 1 2 1 66.501 66.501 2 2.6719E-42 20209 TMT1-7 226.47 0 2210.2 3047.5 2849.4 2556.3 2951.7 3345.1 2090 3049 2918 2545 3044 3217 7 7 7 7 7 7 394340 12229 1372;1444;2616;1366;2333 12106 18895;18896;18897;18898 24657;24658;24659;24660;24661;24662;24663 24660 7 LLLIGNSSVGK Unmodified 1099.6601 0.66010926 365 O95716 RAB3D Ras-related protein Rab-3D yes yes 0 0 0 0 0 9 0 2 62.972 62.972 2 4.4994E-05 16669 TMT1-8 108.7 0 122.43 166.05 202.61 144.92 137.17 228.47 116 167 203 146 145 218 2 2 2 2 2 2 15419 12230 365 12107 18899;18900 24664;24665 24664 2 LLLIQAFRPDR Unmodified 1340.7929 0.79285476 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 9 0 1 65.229 65.229 3 0.00057984 17740 TMT1-8 83.862 29.984 61.582 72.719 47.877 59.071 78.114 83.051 58 73 51 58 80 80 1 1 1 1 1 1 11409 12231 1763 12108 18901 24666 24666 1 LLLLAGVDR Unmodified 968.60187 0.6018661 3025 Q9Y570-3;Q9Y570-2;Q9Y570;Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 0 9 0 1 68.7 68.7 2 0.0097037 19147 TMT1-8 93.195 45.538 84.956 93.123 69.659 74.344 68.764 121.69 80 94 73 73 73 116 1 1 1 1 1 1 9553.5 12232 3025 12109 18902 24667 24667 1 LLLLGAGESGK Unmodified 1056.6179 0.61791009 480;577;1469 P04899;P04899-4;P63096;P09471-2;P09471;P11488;P19087;A8MTJ3;P38405;P38405-2;P08754;P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAI2;GNAI1;GNAO1;GNAT1;GNAT2;GNAT3;GNAL;GNAI3;GNAS Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas no no 0 0 0 0 0 8.4 0.49 3 2 63.987 63.987 2;3 1.7551E-16 17423 TMT1-8 178.22 0 1000.8 1473.3 1328.7 1060.4 1183.9 1631.3 947 1469 1358 1063 1232 1562 6 6 6 6 6 6 359010 12233 480;577;1469 12110 18903;18904;18905;18906;18907 24668;24669;24670;24671;24672;24673 24672 6 LLLLGTGESGK Unmodified 1086.6285 0.62847478 1211 P50148;P29992;O95837 GNAQ;GNA11;GNA14 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14 yes no 0 0 0 0 0 8.33 0.471 2 1 64.172 64.172 2;3 7.7813E-17 19202 TMT1-7 187.5 70.774 535.93 650.31 626.17 479.12 436.19 668.73 506 655 637 480 460 639 3 3 3 3 3 3 76808 12234 1211 12111 18908;18909;18910 24674;24675;24676 24674 3 LLLLGTSNSGK Unmodified 1101.6394 0.63937381 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 9 0 1 62.044 62.044 3 1.5961E-05 16520 TMT1-8 106.4 68.313 116.1 68.396 86.594 64.001 100.12 105.88 109 73 87 65 102 102 1 1 1 1 1 1 11328 12235 785 12112 18911 24677 24677 1 LLLNAENPR Unmodified 1038.5822 0.58219329 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 7 0 1 49.171 49.171 2 0.0016638 13188 TMT1-6 115.86 66.536 176.14 361.32 207.09 212.43 252.93 269.94 167 354 221 210 260 260 1 1 1 1 1 1 25500 12236 673 12113 18912 24678 24678 1 LLLNNDNLLR Unmodified 1196.6877 0.68772099 1277;1143 P52907;P47755;P47755-2 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 0 7.5 0.5 1 1 63.439 63.439 2 8.5216E-39 18931 TMT1-7 223.93 147.79 1395.6 2053.4 1572.1 1498.6 1694.6 1951.5 1319 2043 1635 1486 1750 1876 4 4 4 4 4 4 418750 12237 1277;1143 12114 18913;18914 24679;24680;24681;24682 24682 4 LLLNPGNQR Unmodified 1023.5825 0.58252764 549 P07947 YES1 Tyrosine-protein kinase Yes yes yes 0 0 0 0 0 9 0 1 47.701 47.701 2 0.010634 10855 TMT1-8 91.9 47.551 46.783 34.431 42.966 52.544 33.958 37.407 44 36 44 51 36 36 1 1 1 1 1 1 5491.6 12238 549 12115 18915 24683 24683 1 LLLPGELAK Unmodified 952.59572 0.59571809 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880;Q96A08 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 0 6 2.92 1 1 2 66.098 66.098 2 0.00026318 19812 TMT1-7 143.01 54.068 31182 45919 27414 42357 50112 57461 29428 45564 29772 41110 51655 55245 10 10 10 10 10 10 5004700 12239 239;524;2168;2498 12116 18916;18917;18918;18919 24684;24685;24686;24687;24688;24689;24690;24691;24692;24693 24691 10 LLLPTPTVK Unmodified 980.62702 0.62701821 2142 Q8IX12-2;Q8IX12 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 0 9 0 1 63.739 63.739 2 0.019222 17184 TMT1-8 76.679 28.81 37.917 74.169 56.579 34.485 79.245 83.019 36 73 58 36 80 80 1 1 1 1 1 1 8577.5 12240 2142 12117 18920 24694 24694 1 LLLPWLEAR Unmodified 1109.6597 0.65971533 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 80.248 80.248 2 1.0318E-22 23621 TMT1-8 208.86 117.77 418.67 511.39 435.15 474.09 553.36 583.3 395 514 452 467 569 562 2 2 2 2 2 2 189410 12241 1540 12118 18921 24695;24696 24695 2 LLLQGEADQSLLTFIDK Unmodified 1903.0302 0.030244081 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 7 0 1 87.611 87.611 3 7.2276E-19 28138 TMT1-6 133.71 102.32 68.916 70.633 79.459 56.483 115.63 90.508 65 72 80 58 116 88 2 2 2 2 2 2 11439 12242 1507 12119 18922 24697;24698 24697 2 LLLQLEATK Unmodified 1027.6277 0.6277465 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 8 0 1 67.606 67.606 2 0.00033149 20595 TMT1-7 140.75 87.282 261.71 278.07 322.72 269.63 273.83 285.34 247 283 326 269 283 275 2 2 2 2 2 2 27026 12243 1720 12120 18923 24699;24700 24700 2 LLLQVQHASK Unmodified 1135.6713 0.67134264 665;488 P05141;P12236;P12235 SLC25A5;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 9 0 1 47.273 47.273 3 6.5197E-05 10720 TMT1-8 112.85 80.005 442.02 1380.2 1003.7 867.94 1230.5 1324 424 1341 1042 870 1258 1275 3 3 3 3 3 3 103520 12244 488;665 12121 18924 24701;24702;24703 24702 3 LLLSEEEIEKGVEIEEK Unmodified 1986.0409 0.040868347 2669 Q9HAB8;Q9HAB8-2 PPCS Phosphopantothenate--cysteine ligase yes no 0 0 0 0 1 4 0 1 69.457 69.457 3 1.7361E-13 21954 TMT1-3 119.54 93.07 61.857 33.548 34.996 36.625 33.883 60.861 58 36 36 36 36 58 1 1 1 1 1 1 4878.5 12245 2669 12122 18925 24704 24704 1 LLLSSETPIEGK Unmodified 1285.7129 0.71293269 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 6 0 1 61.837 61.837 3 0.00019581 18793 TMT1-5 91.937 83.867 153.36 246.51 165.19 168.68 212.8 217.79 145 244 174 167 218 210 1 1 1 1 1 1 33892 12246 2697 12123 18926 24705 24705 1 LLLTAIGYGHVR Unmodified 1311.7663 0.76630566 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 9 0 1 60.422 60.422 3 0.00029728 15893 TMT1-8 85.813 58.715 46.703 50.4 42.757 35.724 57.216 52.733 44 51 44 36 58 51 1 1 1 1 1 1 7492.3 12247 2338 12124 18927 24706 24706 1 LLLTPWVK Unmodified 968.60589 0.60588884 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 74.474 74.474 2 0.011467 21427 TMT1-8 87.616 36.65 138.72 191.42 146.79 123.18 133.51 150.76 131 191 152 123 138 145 1 1 1 1 1 1 11163 12248 1754 12125 18928 24707 24707 1 LLLTYADNILR Unmodified 1303.75 0.7499869 2422 Q96IV0-3;Q96IV0-2;Q96IV0 NGLY1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase yes no 0 0 0 0 0 9 0 1 78.862 78.862 2 0.00020975 23060 TMT1-8 102.52 67.228 37.92 74.176 56.156 43.952 42.179 53.162 36 73 58 44 44 51 1 1 1 1 1 1 6230.6 12249 2422 12126 18929 24708 24708 1 LLLVGAPR Unmodified 837.54362 0.54362294 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 1 56.905 56.905 2 0.0073748 14444 TMT1-8 96.048 33.069 522.87 593.31 524.83 403.4 541.01 732.89 493 599 537 407 559 702 2 2 2 2 2 2 61370 12250 856 12127 18930 24709;24710 24709 2 LLLVSFDGFR Unmodified 1165.6495 0.64954457 3065 Q9Y6X5;Q6UWV6 ENPP4;ENPP7 Bis(5'-adenosyl)-triphosphatase ENPP4;Ectonucleotide pyrophosphatase/phosphodiesterase family member 7 yes no 0 0 0 0 0 9 0 1 79.77 79.77 2 0.00057484 23450 TMT1-8 109.44 50.843 108.69 76.757 61.883 73.94 114.87 89.464 102 80 65 73 116 87 2 2 2 2 2 2 13711 12251 3065 12128 18931 24711;24712 24711 2 LLLWAQNELDQK Unmodified 1469.7878 0.78782897 2767 Q9NWU2 GID8 Glucose-induced degradation protein 8 homolog yes yes 0 0 0 0 0 8 0 1 78.824 78.824 3 0.0026262 24898 TMT1-7 71.153 63.745 30.652 51.622 34.416 28.824 43.681 29.668 29 51 36 29 44 29 1 1 1 1 1 1 3802.7 12252 2767 12129 18932 24713 24713 1 LLLWSQR Unmodified 914.53379 0.53378653 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 62.479 62.479 2 0.0081503 16731 TMT1-8 131.04 62.122 153.05 299.63 171.36 128.59 232.96 202.29 145 294 181 131 235 196 1 1 1 1 1 1 23063 12253 1833 12130 18933 24714 24714 1 LLLYDGK Unmodified 820.46945 0.46945494 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 59.771 59.771 2 0.023497 17501 TMT1-7 94.887 43.986 169.17 226.27 230.32 165.15 194.03 251.37 160 227 233 167 201 241 1 1 1 1 1 1 19350 12254 1229 12131 18934 24715 24715 1 LLMSLEELIK Unmodified 1187.6835 0.68354681 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 8 0 1 90.532 90.532 2 0.00023712 29225 TMT1-7 127.4 60.706 39.358 35.185 27.793 28.643 74.31 21.332 37 36 29 29 73 22 1 1 1 1 1 1 2684.7 12255 1138 12132 18935 24716 24716 1 LLNFPTIVER Unmodified 1200.6867 0.68665836 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 8 0 1 70.473 70.473 2 0.0033804 21714 TMT1-7 96.342 53.743 123.3 144.75 72.985 95.822 136.64 96.305 116 145 80 94 138 94 1 1 1 1 1 1 33841 12256 193 12133 18936 24717 24717 1 LLNKDLAELINK Unmodified 1382.8133 0.81331543 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 1 8 0 1 68.497 68.497 3 0.017996 20904 TMT1-7 59.116 44.325 99.78 115.29 84.153 57.489 47.31 98.854 94 116 87 58 51 94 1 1 1 1 1 1 5963 12257 1770 12134 18937 24718 24718 1 LLNLLADLVER Unmodified 1267.75 0.7499869 968 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 0 8 0 1 96.035 96.035 2 0.039479 31305 TMT1-7 64.374 35.647 7.3593 22.809 6.1684 0 22.485 15.348 7 22 7 0 22 15 1 1 1 0 1 1 1472.5 12258 968 12135 18938 24719 24719 1 LLNQLQYCEEAGIPLVAIIGEQELK Unmodified 2840.4994 0.49938144 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 92.998 92.998 4 1.9221E-05 30158 TMT1-6 60.464 48.267 23.403 14.011 22.192 14.667 21.554 22.837 22 15 22 15 22 22 1 1 1 1 1 1 3027.2 12259 664 12136 18939 24720 24720 1 LLNSDLGELINK Unmodified 1327.7347 0.73473076 1594 Q05397-7;Q05397;Q05397-5;Q05397-2;Q05397-6 PTK2 Focal adhesion kinase 1 yes no 0 0 0 0 0 7 0 1 72.967 72.967 3 0.00073322 22534 TMT1-6 79.633 36.005 46.657 50.27 50.721 27.162 80.388 59.534 44 51 51 29 80 58 1 1 1 1 1 1 13343 12260 1594 12137 18940 24721 24721 1 LLNTFLER Unmodified 1004.5655 0.56548059 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 65.501 65.501 2 0.02111 19674 TMT1-7 88.181 42.692 84.731 132.43 74.224 88.963 90.592 106.15 80 131 80 87 94 102 1 1 1 1 1 1 15081 12261 1763 12138 18941 24722 24722 1 LLPAITILGCR Unmodified 1225.7217 0.72166366 2420 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 0 9 0 1 75.399 75.399 2 0.0071273 21766 TMT1-8 76.465 33.438 54.17 49.764 50.688 27.731 50.254 52.932 51 51 51 29 51 51 1 1 1 1 1 1 6042.8 12262 2420 12139 18942 24723 24723 1 LLPDDPYEK Unmodified 1088.539 0.53899107 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 4.5 0.5 1 1 57.796 57.796 2 0.00035532 17449 TMT1-3 140.09 75.332 911.83 1238.8 1330.7 1050 976.37 1445.4 863 1243 1346 1050 1027 1382 3 3 3 3 3 3 204210 12263 1506 12140 18943;18944 24724;24725;24726 24725 3 LLPELHK Unmodified 848.51199 0.51198846 2025 Q6P1M0;Q6P1M0-2 SLC27A4 Long-chain fatty acid transport protein 4 yes no 0 0 0 0 0 7 0 1 51.211 51.211 3 0.0021593 14002 TMT1-6 105.12 0 184.45 241.08 173.97 145.31 149.15 335.8 174 241 181 145 160 319 1 1 1 1 1 1 14382 12264 2025 12141 18945 24727 24727 1 LLPFNPQLFQNNCGETEQDTEK Unmodified 2621.2068 0.20678125 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 4 3 1 1 76.224 76.224 3;4 6.8034E-09 23828 TMT1-6 80.156 72.617 73.365 57.824 63.938 33.027 75.38 75.667 69 60 64 35 76 73 2 2 2 2 2 2 13762 12265 333 12142 18946;18947 24728;24729 24729 2 LLPGIEVLWTGPK Unmodified 1421.8282 0.82823722 225 O60502-4;O60502;O60502-3;O60502-2 MGEA5 Protein O-GlcNAcase yes no 0 0 0 0 0 9 0 1 84.765 84.765 3 0.0015802 25401 TMT1-8 63.727 39.978 46.874 34.685 27.422 36.776 49.838 52.944 44 36 29 36 51 51 1 1 1 1 1 1 5330.5 12266 225 12143 18948 24730 24730 1 LLPIDGANDLFFQPPPLTPTSK Unmodified 2380.2678 0.26784859 225 O60502-4;O60502 MGEA5 Protein O-GlcNAcase yes no 0 0 0 0 0 8 0 1 88.836 88.836 4 0.0098617 28771 TMT1-7 39.288 20.833 7.3494 15.226 14.257 22.941 13.588 30.526 7 15 15 22 15 29 1 1 1 1 1 1 4650.1 12267 225 12144 18949 24731 24731 1 LLPLEEHYR Unmodified 1168.6241 0.6240581 2654;2802 Q9H4M9;Q9NZN3;Q9NZN3-2;Q9NZN4 EHD1;EHD3;EHD2 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 2 no no 0 0 0 0 0 3 2 1 1 49.336 49.336 3 4.8542E-15 13558 TMT1-4 191.17 145.29 564.25 870.09 730.91 524.83 463.35 760.69 534 865 748 528 491 726 3 3 3 3 3 3 308660 12268 2654;2802 12145 18950;18951 24732;24733;24734 24733 3 LLPLVSDEVFIR Unmodified 1399.8075 0.80750177 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 7.5 0.5 1 1 80.552 80.552 2 1.0851E-08 25564 TMT1-6 147.75 103.4 115.5 136.9 128.06 109.72 95.098 160.38 109 138 131 109 101 153 2 2 2 2 2 2 38605 12269 648 12146 18952;18953 24735;24736;24737 24736 3 LLPVLVHTFWIDTK Unmodified 1680.9603 0.96031402 1712 Q13505-3;Q13505 MTX1 Metaxin-1 yes no 0 0 0 0 0 9 0 1 85.057 85.057 3 6.746E-05 25515 TMT1-8 79.466 65.75 38.034 50.749 56.874 59.382 33.094 53.422 36 51 58 58 36 51 1 1 1 1 1 1 5129.9 12270 1712 12147 18954 24738 24738 1 LLPVYELSGEHHDEEWSVK Unmodified 2266.0906 0.090612506 2798 Q9NZK5 CECR1 Adenosine deaminase CECR1 yes yes 0 0 0 0 0 5 0 1 62.694 62.694 4 2.6262E-05 18997 TMT1-4 72.184 63.392 30.591 35.262 58.553 43.405 63.679 67.473 29 36 58 44 65 65 1 1 1 1 1 1 6767.8 12271 2798 12148 18955 24739 24739 1 LLPVYLNCVLK Unmodified 1330.7683 0.7682795 1293 P53992;P53992-2 SEC24C Protein transport protein Sec24C yes no 0 0 0 0 0 9 0 1 78.264 78.264 3 0.004107 22897 TMT1-8 62.303 27.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12272 1293 12149 18956 24740 24740 1 LLPYEQSSLLELIK Unmodified 1644.9338 0.9338245 1920 Q2M389-2;Q2M389 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 0 8 0 1 85.054 85.054 3 0.00011963 27239 TMT1-7 84.297 60.921 23.213 36.147 35.377 28.929 35.043 37.376 22 36 36 29 36 36 1 1 1 1 1 1 4867.9 12273 1920 12150 18957 24741 24741 1 LLPYLAEDELR Unmodified 1330.7133 0.71326704 678 P13224;P13224-2 GP1BB Platelet glycoprotein Ib beta chain yes no 0 0 0 0 0 4.6 2.06 1 1 1 1 1 71.329 71.329 2 5.7828E-68 22729 TMT1-3 253.74 167.93 2357.6 3202.6 2840.9 2205.2 2938.4 3866.7 2228 3204 2905 2223 3033 3706 9 9 9 9 9 9 1151900 12274 678 12151 18958;18959;18960;18961;18962 24742;24743;24744;24745;24746;24747;24748;24749;24750 24744 9 LLQAGFSELK Unmodified 1104.6179 0.61791009 2908 Q9ULA0 DNPEP Aspartyl aminopeptidase yes yes 0 0 0 0 0 8 0 1 65.763 65.763 2 0.00047668 19818 TMT1-7 116.13 66.714 77.382 78.352 92.711 87.688 99.833 82.431 73 80 94 87 102 80 1 1 1 1 1 1 8025.6 12275 2908 12152 18963 24751 24751 1 LLQASFK Unmodified 805.46979 0.46978929 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 9 0 1 56.277 56.277 2 0.0079542 14270 TMT1-8 138.9 22.541 553.21 805.22 837.44 553.65 917.7 741.33 524 805 844 568 926 720 2 2 2 2 2 2 50430 12276 1862 12153 18964 24752;24753 24753 2 LLQCDPSSASQF Unmodified 1351.6078 0.60781569 1051 P37235;P84074 HPCAL1;HPCA Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin yes no 0 0 0 0 0 5 0 1 65.818 65.818 2 6.5859E-05 20172 TMT1-4 108.15 79.748 61.476 95.088 46.843 52.175 41.288 68.112 58 94 51 51 44 65 1 1 1 1 1 1 27967 12277 1051 12154 18965 24754 24754 1 LLQDFFNGK Unmodified 1080.5604 0.56039521 641;754 P11142;P11142-2;P54652;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 no no 0 0 0 0 0 8.67 0.471 1 2 74.668 74.668 2;3 6.6181E-05 21531 TMT1-8 155.07 108.07 259.88 569.8 382.31 312.29 374.12 414.66 247 558 399 313 385 399 4 4 4 4 4 4 88395 12278 641;754 12155 18966;18967;18968 24755;24756;24757;24758 24758 4 LLQDFFNGR Unmodified 1108.5665 0.56654322 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 8 0 1 72.23 72.23 2 0.00024842 22359 TMT1-7 143.7 108.81 161.9 142.01 80.883 87.862 128.06 143.45 152 145 87 87 131 138 1 1 1 1 1 1 15674 12279 618 12156 18969 24759 24759 1 LLQDHPWLLSQNLVVKPDQLIK Unmodified 2596.4741 0.47409339 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 9 0 1 73.692 73.692 5 2.5264E-06 21117 TMT1-8 60.032 40.31 68.581 133.38 82.547 72.708 114.92 89.463 65 131 87 73 116 87 1 1 1 1 1 1 11745 12280 1283 12157 18970 24760 24760 1 LLQDMDINR Unmodified 1116.5597 0.55974328 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 5 0 1 57.652 57.652 2 0.0099275 16970 TMT1-4 89.029 30.799 107.79 178.95 126.31 93.283 102.65 206.01 102 177 131 94 109 196 1 1 1 1 1 1 21492 12281 1229 12158 18971 24761 24761 1 LLQDPLGLAYFTEFLK Unmodified 1867.0131 0.013137454 179 O43566 RGS14 Regulator of G-protein signaling 14 yes yes 0 0 0 0 0 9 0 1 100.63 100.63 3 7.9835E-07 31297 TMT1-8 94.882 67.546 15.91 24.287 10.563 19.833 16.191 19.792 15 24 12 19 17 19 1 1 1 1 1 1 4231.7 12282 179 12159 18972 24762 24762 1 LLQDSVDFSLADAINTEFK Unmodified 2125.0579 0.057915395 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 6.33 0.471 2 1 89.176 89.176 3;4 7.344E-61 29459 TMT1-5 207.43 174.68 691.81 938.54 513.87 578.27 750.51 916.66 652 934 554 570 773 880 13 13 13 13 13 13 142870 12283 575 12160 18973;18974;18975 24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774;24775 24764 13 LLQDYPITDVCQILQK Unmodified 1946.0183 0.018299186 2759 Q9NVG8;Q9NVG8-2;Q9NVG8-3 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 0 7 0 1 82.147 82.147 3 2.7345E-05 26113 TMT1-6 82.837 65.051 38.974 57.862 73.075 50.344 55.481 83.697 37 58 73 51 58 80 2 2 2 2 2 2 9396.7 12284 2759 12161 18976 24776;24777 24776 2 LLQEALEAEER Unmodified 1299.667 0.66704513 2428 Q96JY6-4;Q96JY6;Q96JY6-3;Q96JY6-5 PDLIM2 PDZ and LIM domain protein 2 yes no 0 0 0 0 0 2 0 1 64.251 64.251 2 0.0024162 20508 TMT1-1 92.943 50.753 30.963 13.634 14.246 22.661 28.516 22.638 29 15 15 22 29 22 1 1 1 1 1 1 3345.7 12285 2428 12162 18977 24778 24778 1 LLQFLSIVAR Unmodified 1158.7125 0.71247918 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 9 0 1 87.124 87.124 2 0.014957 26369 TMT1-8 72.275 33.127 30.528 58.831 49.199 51.606 64.071 45.076 29 58 51 51 65 44 1 1 1 1 1 1 11108 12286 161 12163 18978 24779 24779 1 LLQIIDTTLLK Unmodified 1269.7908 0.79078908 2426 Q96JC1;Q96JC1-2 VPS39 Vam6/Vps39-like protein yes no 0 0 0 0 0 9 0 1 88.148 88.148 2 0.0080645 26746 TMT1-8 74.841 40.588 30.768 35.754 28.434 14.442 13.722 37.984 29 36 29 15 15 36 1 1 1 1 1 1 1574.1 12287 2426 12164 18979 24780 24780 1 LLQISLWGNK Unmodified 1170.6761 0.67609367 2663 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 0 0 9 0 1 74.891 74.891 3 0.045733 21649 TMT1-8 39.266 19.102 61.491 72.466 63.392 51.187 41.334 68.111 58 73 65 51 44 65 1 1 1 1 1 1 3601.5 12288 2663 12165 18980 24781 24781 1 LLQKEEHR Unmodified 1051.5774 0.57744226 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 6 0 1 31.282 31.282 4 0.0096808 6733 TMT1-5 76.827 46.572 99.169 199.93 115.02 124.95 139.95 174.03 94 196 123 123 145 167 1 1 1 1 1 1 7425.9 12289 325 12166 18981 24782 24782 1 LLQLLTTK 2 Phospho (STY) 1088.5284 0.5283789 1864 Q15596 NCOA2 Nuclear receptor coactivator 2 yes yes 0 0 0 2 0 9 0 1 68.375 68.375 2 0.036126 19031 TMT1-8 56.011 18.99 99.165 161.07 148.77 124.04 81.65 106.4 94 160 152 123 87 102 1 1 1 1 1 1 9587.8 12290 1864 12167 18982 24783 24783 16;17 1 LLQLTEK Unmodified 843.50657 0.50656873 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 57.789 57.789 2 0.0079571 16558 TMT1-6 121.62 18.9 217.14 319.23 204.51 273.84 192.47 303.65 205 317 219 265 206 290 1 1 1 1 1 1 48538 12291 1546 12168 18983 24784 24784 1 LLQLVEDR Unmodified 984.5604 0.56039521 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 5 0 1 63.371 63.371 2 0.033206 19194 TMT1-4 79.474 34.863 53.994 80.572 54.279 75.67 46.987 83.939 51 80 58 73 51 80 1 1 1 1 1 1 16648 12292 764 12169 18984 24785 24785 1 LLQMPSVVNYSGLR Unmodified 1575.8443 0.84429799 1916 Q27J81;Q27J81-2;Q27J81-3 INF2 Inverted formin-2 yes no 0 0 0 0 0 9 0 1 71.026 71.026 2 1.5999E-09 20044 TMT1-8 116.71 82.847 30.882 20.962 21.742 14.561 28.632 30.097 29 22 22 15 29 29 1 1 1 1 1 1 9405.3 12293 1916 12170 18985 24786 24786 1 LLQPPAPIMPLDTNWPLLTVSK Unmodified 2443.3549 0.35488946 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 2 94.094 94.094 3;4 0.00028145 28903 TMT1-8 51.876 40.254 77.59 102.67 37.243 85.606 37.625 130.04 73 102 44 81 44 123 3 3 3 3 3 3 12438 12294 1287 12171 18986;18987 24787;24788;24789 24787 3 LLQPVIVSPSGTILR Unmodified 1591.9661 0.96612768 1978 Q5T5C0-3;Q5T5C0-2;Q5T5C0 STXBP5 Syntaxin-binding protein 5 yes no 0 0 0 0 0 9 0 1 70.827 70.827 3 3.7949E-07 20001 TMT1-8 86.539 70.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12295 1978 12172 18988 24790 24790 1 LLQQVSQIYQSIEFSR Unmodified 1938.0211 0.021076378 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 85.589 85.589 3 4.8056E-08 25775 TMT1-8 100.58 73.248 46.3 89.211 77.708 73.312 40.023 76.676 44 88 80 72 44 73 2 2 2 2 2 2 16151 12296 1754 12173 18989 24791;24792 24792 2 LLQSLGLK Unmodified 870.55385 0.55385327 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 9 0 1 68.725 68.725 3 0.0031402 19167 TMT1-8 77.732 33.924 68.731 101.42 84.505 71.788 99.517 82.44 65 101 87 72 101 80 1 1 1 1 1 1 8848 12297 1796 12174 18990 24793 24793 1 LLQSLLDTR Unmodified 1057.6132 0.61315906 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 8 0 1 70.739 70.739 2 0.00065928 21787 TMT1-7 131.62 83.374 200.25 268.29 201.18 200.51 266.22 203.47 189 268 210 199 270 198 1 1 1 1 1 1 31684 12298 1666 12175 18991 24794 24794 1 LLQSNPVLEAFGNAK Unmodified 1599.8621 0.86205654 43 O00159-2;O00159-3;O00159 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 0 9 0 1 75.196 75.196 3 0.014004 21713 TMT1-8 45.332 19.208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12299 43 12176 18992 24795 24795 1 LLQTDDEEEAGLLELLK Unmodified 1927.999 0.99900353 1310 P55060-3;P55060 CSE1L Exportin-2 yes no 0 0 0 0 0 4.5 0.5 1 1 87.668 87.668 3 5.3966E-08 29038 TMT1-3 102.03 75.219 61.557 57.538 65.057 58.19 70.532 91.795 58 59 66 58 73 88 2 2 2 2 2 2 16814 12300 1310 12177 18993;18994 24796;24797 24796 2 LLQTIGK Unmodified 771.48544 0.48543935 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 9 0 1 56.099 56.099 2 0.0079542 14219 TMT1-8 138.9 57.261 299.13 453.4 376.17 310.9 409.06 495.74 283 451 387 312 421 476 2 2 2 2 2 2 48448 12301 1083 12178 18995 24798;24799 24799 2 LLQTSNITK Unmodified 1016.5866 0.58660996 1680;1676 Q13177;O75914-2;O75914;O75914-4;O75914-3;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 0 0 0 8 0 1 51.02 51.02 2 0.00063149 13972 TMT1-7 132.39 58.264 208.57 275.61 238.47 202.66 266.05 266.37 197 276 245 203 272 257 1 1 1 1 1 1 31625 12302 1680;1676 12179 18996 24800 24800 1 LLQYSDALEHLLTTGQGVVLER Unmodified 2454.3118 0.31183867 347 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 0 0 7 0 2 85.316 85.316 3;4 0.00066107 27327 TMT1-6 43.523 12.061 23.347 36.52 12.553 30.705 12.938 39.073 22 36 15 29 15 37 1 1 1 1 1 1 2844.4 12303 347 12180 18997;18998 24801;24802 24802 2 LLREELQLLQEQGSYVGEVVR Unmodified 2457.3227 0.32273771 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 1 5 0 1 78.37 78.37 4 0.0063912 25148 TMT1-4 43.349 34.525 23.16 36 44.415 20.565 44.317 22.187 22 36 44 22 44 22 1 1 1 1 1 1 3584.1 12304 1416 12181 18999 24803 24803 1 LLSAEER Unmodified 816.43413 0.43413207 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 4 0 1 39.329 39.329 2 0.0071718 10055 TMT1-3 78.178 4.562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12305 2486 12182 19000 24804 24804 1 LLSAGATK Unmodified 759.44905 0.44905385 661 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 0 0 0 0 0 8 0 1 45.128 45.128 2 0.017598 11658 TMT1-7 90.709 37.539 207.28 329.05 229.27 216.05 280.74 277.68 196 326 240 215 287 268 1 1 1 1 1 1 15551 12306 661 12183 19001 24805 24805 1 LLSALCILPQPEDMNER Unmodified 1997.9914 0.99143251 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 81.432 81.432 3 0.0026473 25949 TMT1-6 55.094 51.807 38.345 12.761 36.695 29.132 20.083 46.331 36 15 36 29 22 44 1 1 1 1 1 1 16575 12307 228 12184 19002 24806 24806 1 LLSALIR Unmodified 784.51707 0.51707383 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 9 0 1 64.915 64.915 2 0.04732 17718 TMT1-8 81.784 0 84.692 92.39 114.6 111.04 67.333 114.27 80 94 116 109 73 109 1 1 1 1 1 1 20215 12308 1264 12185 19003 24807 24807 1 LLSDKLK Unmodified 815.51165 0.5116541 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 1 8 0 1 49.514 49.514 3 0.015715 13458 TMT1-7 83.867 6.106 615.7 763.71 649.5 449.56 190.36 1409.1 581 767 664 450 248 1327 1 1 1 1 1 1 54823 12309 1486;1487 12186 19004 24808 24808 1 LLSDSLPPSTGTFQEAQSR Unmodified 2033.0065 0.006548526 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.17 1.95 1 1 3 1 61.7 61.7 2;3;4 3.6318E-32 18756 TMT1-5 154.49 140.07 1536.5 2008.2 1734 1212 1892.8 2047.1 1451 2012 1771 1236 1930 1971 21 21 21 21 21 21 271120 12310 3010 12187 19005;19006;19007;19008;19009;19010 24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828;24829 24823 21 LLSEEVFDFSSGQITQVK Unmodified 2026.0259 0.025886985 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 6.33 0.471 2 1 79.854 79.854 3;4 2.4282E-12 25283 TMT1-6 94.882 70.594 146.64 151.03 112.18 103.51 126.83 158.41 138 153 117 103 131 152 3 3 3 3 3 3 21385 12311 121 12188 19011;19012;19013 24830;24831;24832;24833 24833 4 LLSEIEFLVNHMDLAK Unmodified 1870.9863 0.98627078 2755 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 yes no 0 0 0 0 0 8 0 1 95.418 95.418 3 0.019977 31109 TMT1-7 45.723 34.936 7.3473 15.22 14.612 14.981 28.869 22.628 7 15 15 15 29 22 1 1 1 1 1 1 677.88 12312 2755 12189 19014 24834 24834 1 LLSESAQPLK Unmodified 1084.6128 0.61282471 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 53.362 53.362 2;3 2.1499E-06 14856 TMT1-6 159.79 105.82 175.78 435.89 203.06 299.76 271.35 317.39 167 424 225 290 283 305 2 2 2 2 2 2 28186 12313 2638 12190 19015;19016 24835;24836 24836 2 LLSESAQPLKK Unmodified 1212.7078 0.70778773 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 1 8 0 1 48.795 48.795 3 0.028384 13138 TMT1-7 54.199 20.974 291.5 498.91 358.37 382.97 411.24 488.22 276 493 376 377 426 469 1 1 1 1 1 1 15930 12314 2638 12191 19017 24837 24837 1 LLSGDTYEAVVTAVDPVADIATLR Unmodified 2488.3061 0.30608459 175 O43464-2;O43464-4;O43464-3;O43464 HTRA2 Serine protease HTRA2, mitochondrial yes no 0 0 0 0 0 5 0 1 92.163 92.163 3 4.7396E-10 30453 TMT1-4 70.345 63.392 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12315 175 12192 19018 24838 24838 1 LLSGPWVPGSGVSGQALAVAPDGK Unmodified 2262.2008 0.20083166 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 2 75.824 75.824 3;4 2.2702E-07 22008 TMT1-8 69.27 53.643 92.203 139.36 74.831 65.166 75.452 152.42 87 138 80 65 80 145 2 2 2 2 2 2 11159 12316 2061 12193 19019;19020 24839;24840 24840 2 LLSHCLLVTLAAHLPAEFTPAVHASLDK Unmodified 3023.6266 0.62664764 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 0 9 0 2 77.947 77.947 4;5 1.0227E-39 22863 TMT1-8 125.78 100.58 340.28 324.12 242.28 255.66 167.47 203.09 320 330 254 250 178 195 3 3 3 3 3 3 60175 12317 1499 12194 19021;19022 24841;24842;24843 24843 3 LLSISGK Unmodified 716.44324 0.44324019 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 9 0 1 54.268 54.268 2 0.014256 13488 TMT1-8 104.21 0 232.27 212.55 96.237 344.61 259.49 633.26 218 216 116 325 284 601 1 1 1 1 1 1 19492 12318 517 12195 19023 24844 24844 1 LLSLCLQK Unmodified 973.56304 0.56303775 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 9 0 1 65.262 65.262 2 0.025533 17804 TMT1-8 73.665 10.1 122.75 205.81 114.21 132.72 194.61 125.56 116 203 123 131 196 123 1 1 1 1 1 1 17753 12319 2853 12196 19024 24845 24845 1 LLSLGAGEFK Unmodified 1033.5808 0.5807963 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 8 0 1 66.805 66.805 2 0.00027605 20204 TMT1-7 125.48 85.048 92.265 108.24 90.84 87.743 102.84 208.13 87 109 94 87 109 198 1 1 1 1 1 1 14780 12320 666 12197 19025 24846 24846 1 LLSLISIALPENK Unmodified 1409.8494 0.84936659 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 1 88.694 88.694 3 2.5106E-06 26991 TMT1-8 102.62 88.059 39.142 43.219 57.279 60.314 40.364 84.128 37 44 58 59 44 80 2 2 2 2 2 2 6174.9 12321 2100 12198 19026 24847;24848 24848 2 LLSPFMPFVTEELFQR Unmodified 1953.007 0.0070062184 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 96.498 96.498 3 0.00078412 29763 TMT1-8 58.671 39.093 23.291 28.808 28.567 21.668 35.89 22.428 22 29 29 22 36 22 1 1 1 1 1 1 5442.1 12322 903 12199 19027 24849 24849 1 LLSQEEGEYFNVPVPPEGSEANEELR Unmodified 2931.3774 0.37741163 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 0 3.67 0.471 1 2 72.613 72.613 3;4 1.5628E-11 23065 TMT1-3 86.604 79.411 130.12 182.25 157.22 156 156.78 129.84 123 182 160 154 161 126 7 7 6 7 7 7 28155 12323 501 12200 19028;19029;19030 24850;24851;24852;24853;24854;24855;24856 24853 7 LLSQLLYEFYTCIPPVK Unmodified 2083.1064 0.10638591 2305 Q92608;Q92608-2 DOCK2 Dedicator of cytokinesis protein 2 yes no 0 0 0 0 0 9 0 2 101.51 101.51 3;4 0.0013363 31675 TMT1-8 55.011 37.932 7.476 6.9439 0 7.5245 6.7267 7.2701 7 7 0 7 7 7 1 1 0 1 1 1 1069.2 12324 2305 12201 19031;19032 24857;24858 24857 2 LLSSGSFGNLENLSLAFTNVTSACAEHLIK Unmodified 3192.6125 0.61251372 2150 Q8IY22-3;Q8IY22-2;Q8IY22 CMIP C-Maf-inducing protein yes no 0 0 0 0 0 9 0 1 89.321 89.321 4 3.9121E-39 27154 TMT1-8 111.15 82.497 30.776 35.777 27.022 46.118 19.302 46.353 29 36 29 44 22 44 1 1 1 1 1 1 8162.3 12325 2150 12202 19033 24859 24859 1 LLSTDPVAAK Unmodified 1013.5757 0.57571092 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 7 0 1 54.499 54.499 2 4.8224E-05 15271 TMT1-6 146.79 76.261 183.85 302 223.96 179.96 240.48 279.89 174 299 232 181 247 269 2 2 2 2 2 2 14567 12326 1637 12203 19034 24860;24861 24860 2 LLSTDPVTAK Unmodified 1043.5863 0.58627561 1467 P63010-2;P63010;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 0 6.5 0.5 1 1 54.292 54.292 2 0.00013778 15847 TMT1-5 135.43 72.714 214.78 304.75 252.65 257.41 274.07 294.92 203 304 262 254 283 284 3 3 3 3 3 3 24876 12327 1467 12204 19035;19036 24862;24863;24864 24862 3 LLSTQAEESQGPVLK Unmodified 1598.8516 0.85155143 1743 Q14005-3;Q14005-2;Q14005;Q14005-4 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 0 5.5 0.5 1 1 56.703 56.703 3 5.8681E-15 16802 TMT1-5 133.48 115.11 114.99 205.62 156.9 74.133 210.31 173.09 109 203 160 80 210 168 1 1 1 1 1 1 24786 12328 1743 12205 19037;19038 24865;24866 24866 2 LLSTVAQAVK Unmodified 1028.623 0.62299547 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 9 0 1 63.607 63.607 2 4.1386E-07 17161 TMT1-8 157.96 97.196 153.92 133.67 166.53 168.98 193.01 275.92 145 138 169 167 201 264 1 1 1 1 1 1 20176 12329 1780 12206 19039 24867 24867 1 LLSVEGSTLR Unmodified 1073.6081 0.60807369 43 O00159-2;O00159-3;O00159 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 0 6 0 1 53.568 53.568 2 0.01057 15550 TMT1-5 83.456 44.308 53.836 95.244 68.277 106.02 74.38 129 51 94 73 102 80 123 1 1 1 1 1 1 8888.2 12330 43 12207 19040 24868 24868 1 LLSVPLR Unmodified 796.51707 0.51707383 2914 Q9ULZ3;Q9ULZ3-2 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 9 0 1 57.269 57.269 2 0.0076757 14673 TMT1-8 133.47 36.803 206.47 382.91 320.92 199.36 238.64 307.66 196 378 327 204 247 295 2 2 2 2 2 2 27136 12331 2914 12208 19041 24869;24870 24870 2 LLSVSSK Unmodified 732.43815 0.43815481 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 9 0 1 49.018 49.018 2 0.019424 11398 TMT1-8 85.212 18.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12332 2430 12209 19042 24871 24871 1 LLSVVPVPEGYSVK Unmodified 1485.8443 0.84428121 2597 Q9GZN8;Q9GZN8-2 C20orf27 UPF0687 protein C20orf27 yes no 0 0 0 0 0 8 0 1 72.328 72.328 3 1.7978E-05 22464 TMT1-7 94.728 72.682 115.88 75.357 116.57 110.33 98.792 82.461 109 80 117 109 102 80 2 2 2 2 2 2 18896 12333 2597 12210 19043 24872;24873 24873 2 LLSYIQR Unmodified 891.5178 0.51780212 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 9 0 1 56.818 56.818 2 0.0081624 14492 TMT1-8 140.12 76.816 301.03 497.9 380.2 305.99 425.12 461.17 285 493 393 308 435 444 1 1 1 1 1 1 57221 12334 3006 12211 19044 24874 24874 1 LLTAPELILDQWFQLSSSGPNSR Unmodified 2571.3333 0.33330239 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 2 103.23 103.23 3;4 6.1402E-26 32235 TMT1-8 118.36 101.48 9.5251 18.101 24.437 8.9034 12.469 20.964 9 18 24 9 13 20 1 2 2 1 2 2 18152 12335 2525 12212 19045;19046 24875;24876 24876 2 LLTFNPTYCALK Unmodified 1439.7483 0.74827234 1751 Q14139;Q14139-2 UBE4A Ubiquitin conjugation factor E4 A yes no 0 0 0 0 0 9 0 1 70.608 70.608 3 0.047552 19897 TMT1-8 37.94 17.477 61.616 64.179 49.428 35.764 33.923 60.86 58 65 51 36 36 58 1 1 1 1 1 1 5230 12336 1751 12213 19047 24877 24877 1 LLTSFLPAQLLR Unmodified 1370.8286 0.82857157 558 P08195-2;P08195-3;P08195;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 0 9 0 1 85.173 85.173 2 0.00094674 25547 TMT1-8 92.239 50.255 23.222 44.806 26.543 45.57 49.984 36.95 22 44 29 44 51 36 1 1 1 1 1 1 6848.2 12337 558 12214 19048 24878 24878 1 LLTSLFQDLQVEALHK Unmodified 1854.0251 0.025099124 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 8 0 1 86.319 86.319 3 0.0040342 27768 TMT1-7 54.7 36.104 31.911 20.766 29.331 14.374 14.495 15.576 30 22 29 15 15 15 1 1 1 1 1 1 3027.2 12338 1977 12215 19049 24879 24879 1 LLTSQDVSYDEAR Unmodified 1495.7155 0.71545188 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 3 0 2 51.744 51.744 2;3 1.8066E-10 15955 TMT1-2 138.94 91.634 68.92 71.722 77.908 65.529 46.391 114.87 65 73 79 65 51 109 2 2 2 2 2 2 10897 12339 651 12216 19050;19051 24880;24881 24880 2 LLTVPFEK Unmodified 945.55352 0.55351892 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 8 0 2 67.113 67.113 2;3 7.2391E-07 20360 TMT1-7 167.24 53.546 476.08 873.46 757.98 529.8 752.46 833.46 452 863 773 539 770 802 2 2 2 2 2 2 99689 12340 349 12217 19052;19053 24882;24883 24883 2 LLVATSVAAR Unmodified 999.60768 0.60767975 2072 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 0 9 0 1 51.26 51.26 2 0.040247 12252 TMT1-8 63.673 34.1 83.944 294.29 69.303 151.55 148.99 88.49 80 283 87 145 152 87 1 1 1 1 1 1 7139.8 12341 2072 12218 19054 24884 24884 1 LLVCQMCIK Unmodified 1163.5865 0.58649208 1776 Q14432 PDE3A cGMP-inhibited 3',5'-cyclic phosphodiesterase A yes yes 0 0 0 0 0 9 0 1 62.335 62.335 2 0.0018388 16670 TMT1-8 112.17 62.753 23.122 44.529 43.541 28.714 20.652 30.325 22 44 44 29 22 29 1 1 1 1 1 1 4555.3 12342 1776 12219 19055 24885 24885 1 LLVDVDESTLSPEEQKER Unmodified 2086.043 0.042993612 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 1 4 0 1 59.164 59.164 3 0.00020233 17894 TMT1-3 73.168 58.014 54.077 80.802 40.158 52.288 56.454 52.755 51 80 44 51 58 51 1 1 1 1 1 1 9596.7 12343 286 12220 19056 24886 24886 1 LLVETSDLSTFCFHLR Unmodified 1936.9717 0.97168334 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 8 0 1 73.354 73.354 3 2.5497E-07 22782 TMT1-7 102.63 99.712 30.467 51.108 65.909 26.95 43.511 37.134 29 51 65 29 44 36 1 1 1 1 1 1 5100.3 12344 1314 12221 19057 24887 24887 1 LLVFATDDGFHFAGDGK Unmodified 1808.8733 0.87334951 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 2 73.762 73.762 3;4 1.7355E-24 22855 TMT1-6 146.3 138.21 268.54 450.51 290.74 244.44 378.05 391.09 254 445 305 246 385 377 3 3 3 3 3 3 65369 12345 485 12222 19058;19059 24888;24889;24890 24888 3 LLVFSTDAGFHFAGDGK Unmodified 1780.8784 0.87843489 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 8.5 0.5 1 1 72.094 72.094 3 1.8157E-26 20448 TMT1-8 138.91 111.41 484.68 566.94 474.04 417.48 476.04 565.25 457 571 489 416 492 543 3 3 3 3 3 3 73706 12346 500 12223 19060;19061 24891;24892;24893 24893 3 LLVGVDEK Unmodified 871.50148 0.50148335 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 6 0 1 55.496 55.496 2 0.0042114 16353 TMT1-5 126.67 58.246 230.62 360.13 249.25 232.99 304.78 316.43 218 357 261 232 312 305 2 2 2 2 2 2 44092 12347 1283 12224 19062 24894;24895 24895 2 LLVIGDLGVGK Unmodified 1082.6699 0.66994566 1341 P57729 RAB38 Ras-related protein Rab-38 yes yes 0 0 0 0 0 9 0 1 73.867 73.867 2 0.00051725 21205 TMT1-8 96.342 35.369 61.817 42.071 34.49 36.508 41.715 76.628 58 44 36 36 44 73 1 1 1 1 1 1 6115.4 12348 1341 12225 19063 24896 24896 1 LLVLDVDYTLFDHR Unmodified 1717.9039 0.90392136 2274 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 0 0 0 0 0 7 0 1 79.973 79.973 3 6.2873E-07 25296 TMT1-6 91.62 78.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12349 2274 12226 19064 24897 24897 1 LLVLYSGEDDELLQR Unmodified 1761.9149 0.91487997 2642 Q9H3U1;Q9H3U1-2;Q9H3U1-3 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 5 0 1 75.383 75.383 3 2.9014E-35 23958 TMT1-4 169.04 127.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12350 2642 12227 19065 24898 24898 1 LLVPLVPDLQDVAQLR Unmodified 1788.0509 0.050919944 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 7.67 0.471 1 2 89.716 89.716 3 6.3604E-30 28616 TMT1-7 191.84 168.83 77.403 110.79 61.69 89.655 93.513 50.632 73 110 66 87 95 50 3 3 2 3 3 3 62389 12351 2525 12228 19066;19067;19068 24899;24900;24901;24902 24900 4 LLVPSPEGMSEIYLR Unmodified 1702.8964 0.89639314 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 7.6 1.02 1 1 2 1 75.556 75.556 2;3 7.3028E-23 23654 TMT1-6 175.01 153.78 423.86 491.12 481.27 339.85 396.6 576.05 400 496 488 344 413 551 5 5 5 5 5 5 185100 12352 2112 12229 19069;19070;19071;19072;19073 24903;24904;24905;24906;24907;24908;24909 24905 7 LLVPSPEGMSEIYLR Oxidation (M) 1718.8913 0.89130776 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 1 0 0 7 0 1 66.976 66.976 2 0.0038594 20213 TMT1-6 85.813 64.942 30.732 44.288 27.255 29.424 34.471 53.382 29 44 29 29 36 51 1 1 1 1 1 1 14063 12353 2112 12229 19074 24910 24910 280 1 LLVPTQFVGAIIGK Unmodified 1454.8861 0.88608645 67 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 0 9 0 1 85.943 85.943 2 1.6742E-16 25887 TMT1-8 151.98 0 15.658 45.172 35.209 21.415 28.316 30.106 15 44 36 22 29 29 1 1 1 1 1 1 4012.1 12354 67 12230 19075 24911 24911 1 LLVPYLMEAIR Unmodified 1316.7526 0.75262943 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 2 84.516 84.516 2;3 8.5166E-05 25268 TMT1-8 96.015 75.811 62.678 48.965 64.145 90.091 62.558 68.112 59 51 66 87 66 65 2 2 2 2 2 1 36755 12355 1909 12231 19076;19077 24912;24913 24912 2 LLVSASQDGK Unmodified 1016.5502 0.55022446 1454;1453;2674 P62879;Q9HAV0;P62873;P62873-2;P16520-2;P16520 GNB2;GNB4;GNB1;GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 no no 0 0 0 0 0 6.67 0.471 1 2 48.715 48.715 2 3.8236E-19 13142 TMT1-6 159.79 108.01 115.13 198.45 139.27 115.13 178.62 218.76 109 196 145 116 183 210 1 1 1 1 1 1 15021 12356 1454;2674;1453 12232 19078;19079;19080 24914;24915;24916 24915 3 LLVVDPETDEQLQK Unmodified 1625.8512 0.85121708 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 0 4.33 0.471 2 1 65.419 65.419 2;3 7.056E-20 20324 TMT1-3 166.62 90.294 380.42 537.75 349.25 355.3 458.4 492.2 359 535 369 352 470 474 3 3 3 3 3 3 99263 12357 104 12233 19081;19082;19083 24917;24918;24919 24918 3 LLVVTDPR Unmodified 911.54402 0.54401687 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 6.5 0.5 1 1 53.13 53.13 2 0.020468 14814 TMT1-6 88.643 36.344 393.04 711.19 425.21 503.83 572.78 678.69 372 700 455 494 592 652 2 2 2 2 2 2 110390 12358 579 12234 19084;19085 24920;24921 24921 2 LLVVYPWTQR Unmodified 1273.7183 0.71829284 1497;428;34;25 P02042;P69892;P69891;P68871;CON__Q3SX09;CON__P02070 HBD;HBG2;HBG1;HBB Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 0 6.33 3.77 1 2 71.664 71.664 2;3 9.61E-25 20244 TMT1-8 199.29 142.24 10608 10464 7180.9 6379.5 1435.8 4788 9975 10620 7529 6253 1810 4530 6 6 6 6 6 6 2730300 + 12359 428;1497;34;25 12235 19086;19087;19088 24922;24923;24924;24925;24926;24927 24925 6 LLWASPPGR Unmodified 995.55525 0.55525025 1795 Q14761 PTPRCAP Protein tyrosine phosphatase receptor type C-associated protein yes yes 0 0 0 0 0 9 0 1 58.485 58.485 2 0.013975 15178 TMT1-8 87.251 87.251 138.05 166.69 100.93 141.64 168.74 196.66 130 167 109 138 174 189 2 2 2 2 2 2 13009 12360 1795 12236 19089 24928;24929 24929 2 LLWEQLQGLESSK Unmodified 1529.809 0.80895834 1943 Q4V328-4;Q4V328;Q4V328-2;Q4V328-3 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 0 7 0 1 77.155 77.155 3 0.0062574 24232 TMT1-6 61.212 39.961 61.901 33.672 27.401 36.911 42.76 45.684 58 36 29 36 44 44 1 1 1 1 1 1 5528.5 12361 1943 12237 19090 24930 24930 1 LLWHGSR Unmodified 867.47152 0.47152062 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 1 39.273 39.273 3 0.026609 7882 TMT1-8 57.177 39.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12362 606 12238 19091 24931 24931 1 LLWTIPK Unmodified 869.53747 0.53747492 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 9 0 1 69.777 69.777 2 0.013674 19592 TMT1-8 107.66 53.109 160.38 307.25 195.46 208.22 223 233.49 152 302 207 205 230 225 1 1 1 1 1 1 23369 12363 2172 12239 19092 24932 24932 1 LLWTLESLVTGR Unmodified 1386.7871 0.78710068 2157 Q8IZ83;Q8IZ83-3;Q8IZ83-2 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 9 0 1 96.25 96.25 2 4.64E-14 29712 TMT1-8 171.87 126.91 54.026 64.472 62.538 81.978 92.232 67.724 51 65 65 80 94 66 2 2 2 2 2 2 6381.1 12364 2157 12240 19093 24933;24934 24934 2 LLYDIVFK Unmodified 1009.5848 0.58481905 863 P23497;P23497-7;P23497-6;P23497-5;P23497-2;P23497-3;P23497-4 SP100 Nuclear autoantigen Sp-100 yes no 0 0 0 0 0 9 0 1 81.799 81.799 2 0.010726 24239 TMT1-8 89.142 37.355 61.403 79.776 71.991 42.618 62.909 90.947 58 80 73 44 65 87 1 1 1 1 1 1 7893.6 12365 863 12241 19094 24935 24935 1 LLYDLADQLHAAVGASR Unmodified 1811.953 0.95299681 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 78.004 78.004 3 2.2996E-19 24641 TMT1-7 139.46 122.38 146 219.38 163.14 82.148 171.22 204.05 138 218 167 87 174 196 3 3 3 3 3 3 50169 12366 693 12242 19095;19096 24936;24937;24938 24936 3 LLYDTFSAFGVILQTPK Unmodified 1912.0346 0.034601177 1854 Q15427 SF3B4 Splicing factor 3B subunit 4 yes yes 0 0 0 0 0 9 0 2 98.887 98.887 3;4 0.0023221 30603 TMT1-8 51.147 34.267 55.32 42.349 44.102 15.413 20.97 38.844 52 44 44 15 22 37 2 2 2 1 2 2 6154.5 12367 1854 12243 19097;19098 24939;24940 24939 2 LLYEALVDCK Unmodified 1222.6268 0.62676022 2077 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 0 0 6 0 1 70.914 70.914 3 0.013077 22379 TMT1-5 61.353 28.407 38.205 43.67 34.11 45.563 26.4 53.613 36 44 36 44 29 51 1 1 1 1 1 1 5178.7 12368 2077 12244 19099 24941 24941 1 LLYGFLIK Unmodified 965.59499 0.5949898 2298 Q92542-2;Q92542 NCSTN Nicastrin yes no 0 0 0 0 0 9 0 1 79.291 79.291 2 0.0028216 23286 TMT1-8 132.94 84.767 77.224 101.66 99.626 95.402 74.575 137.52 73 102 102 94 80 131 1 1 1 1 1 1 10522 12369 2298 12245 19100 24942 24942 1 LLYLLESTEDPVIIER Unmodified 1902.035 0.034995108 2169 Q8N2F6-6;Q8N2F6-4;Q8N2F6-5;Q8N2F6-3;Q8N2F6-2;Q8N2F6 ARMC10 Armadillo repeat-containing protein 10 yes no 0 0 0 0 0 6 0 1 88.367 88.367 3 0.00053141 29190 TMT1-5 70.47 59.209 30.964 13.634 14.234 22.932 14.101 15.588 29 15 15 22 15 15 1 1 1 1 1 1 2877.7 12370 2169 12246 19101 24943 24943 1 LLYNNVSNFGR Unmodified 1295.6622 0.66223452 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 57.27 57.27 2 3.8272E-92 14617 TMT1-8 264.9 208.09 223.67 268.32 232.27 204.25 259.35 246.31 211 270 239 204 265 238 2 2 2 2 2 2 45449 12371 1540 12247 19102 24944;24945 24944 2 LLYNRPGTVSSLK Unmodified 1446.8195 0.81946344 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 1 9 0 1 48.762 48.762 3 0.00048822 11297 TMT1-8 73.881 46.912 116.04 52.059 109.37 109.09 187.81 141.75 109 58 109 109 189 138 1 1 1 1 1 1 6294.9 12372 1028 12248 19103 24946 24946 1 LLYPGYK Unmodified 852.47454 0.47454032 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 9 0 1 55.572 55.572 2 0.027306 13936 TMT1-8 90.939 42.435 169.85 201.18 137.41 147.1 169.89 216.88 160 202 145 145 176 208 1 1 1 1 1 1 12581 12373 2631 12249 19104 24947 24947 1 LLYPPETGLFLVR Unmodified 1516.8654 0.865351 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 8.5 0.5 1 1 79.241 79.241 2 1.154E-17 23223 TMT1-8 160.33 74.486 92.008 131.27 114.43 61.646 137.11 128.27 87 131 116 65 138 124 2 2 2 2 2 2 40604 12374 1083 12250 19105;19106 24948;24949;24950 24949 3 LLYTFPGWK Unmodified 1123.6066 0.60661712 2236 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 0 9 0 1 75.232 75.232 3 0.010306 21726 TMT1-8 59.245 40.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12375 2236 12251 19107 24951 24951 1 LMAELVHNR Unmodified 1081.5702 0.57024839 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 7 0 1 46.557 46.557 3 0.0015286 12130 TMT1-6 91.867 45.851 53.924 64.189 79.883 57.33 69.289 129.14 51 65 80 58 73 123 1 1 1 1 1 1 6896.2 12376 2876 12252 19108 24952 24952 1 LMALLGQALK Unmodified 1056.6365 0.63653704 1923 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 0 0 0 0 0 9 0 1 80.522 80.522 2 0.012152 23786 TMT1-8 77.072 43.951 54.077 80.802 40.158 52.288 56.454 52.755 51 80 44 51 58 51 1 1 1 1 1 1 5177.3 12377 1923 12253 19109 24953 24953 1 LMANPEALK Unmodified 985.52665 0.52665224 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes yes 0 0 0 0 0 7 0 1 54.227 54.227 2 0.0016528 15194 TMT1-6 79.986 44.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12378 993 12254 19110 24954 24954 1 LMCPQEIVDYIADK Unmodified 1693.8055 0.80552922 92 O14561 NDUFAB1 Acyl carrier protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 83.795 83.795 3 0.0069149 27436 TMT1-5 56.599 30.164 30.898 28.561 12.67 37.957 33.822 60.863 29 29 15 36 36 58 1 1 1 1 1 1 4027.5 12379 92 12255 19111 24955 24955 1 LMCPQEIVDYIADKK Unmodified 1821.9005 0.90049224 92 O14561 NDUFAB1 Acyl carrier protein, mitochondrial yes yes 0 0 0 0 1 8 0 1 77.344 77.344 3 1.0158E-06 24393 TMT1-7 103.88 85.737 200.29 269.5 192.24 229.66 197.35 372.8 189 269 203 224 211 355 3 3 3 3 3 3 17886 12380 92 12256 19112 24956;24957;24958 24958 3 LMDLDVEQLGIPEQEYSCVVK Unmodified 2464.1866 0.18656308 663 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 0 5 0 1 81.621 81.621 4 0.00021227 26404 TMT1-4 58.107 43.493 15.789 36.902 20.188 29.683 43.092 45.674 15 36 22 29 44 44 1 1 1 1 1 1 5126.8 12381 663 12257 19113 24959 24959 1 LMDLLADSR Unmodified 1032.5274 0.52738052 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 6 0 1 68.384 68.384 2 0.0023265 21397 TMT1-5 76.605 37.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12382 237 12258 19114 24960 24960 1 LMDQLEALKK Unmodified 1187.6584 0.6583947 2701 Q9NP79 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes yes 0 0 0 0 1 8 0 1 62.715 62.715 3 0.0070922 18609 TMT1-7 74.53 52.332 122.83 167.16 134.17 100.88 138.53 247.62 116 167 138 102 145 236 1 1 1 1 1 1 9703 12383 2701 12259 19115 24961 24961 1 LMDQNLK Unmodified 860.44259 0.44258826 519;521 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 6 0.816 1 1 1 48.394 48.394 2;3 0.0023941 13428 TMT1-4 70.912 24.487 891.75 2036.1 1324.8 1178.9 1344.2 2076.6 848 1991 1390 1174 1405 1984 3 3 3 3 3 3 303360 12384 519;521 12260 19116;19117;19118 24962;24963;24964;24965 24962 4 LMDYSLLVGIHDVER Unmodified 1758.8975 0.89745577 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 6 0 1 70.443 70.443 3 1.1663E-17 22278 TMT1-5 151.22 141.65 54.064 64.578 56.024 58.034 107.46 113.13 51 65 58 58 109 109 1 1 1 1 1 1 22868 12385 1152;1153 12261 19119 24966 24966 1 LMEDLDR Unmodified 890.41677 0.41676744 510 P06703 S100A6 Protein S100-A6 yes yes 0 0 0 0 0 2.5 0.5 1 1 50.306 50.306 2 7.5354E-07 15340 TMT1-2 167.24 76.529 733.58 1557 903.94 821.33 887.09 1305.1 696 1524 959 816 927 1248 3 3 3 3 3 3 241980 12386 510 12262 19120;19121 24967;24968;24969 24969 3 LMELFPANK Unmodified 1061.558 0.55795237 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 68.705 68.705 3 0.019814 20946 TMT1-7 57.598 35.512 77.697 47.93 65.524 34.528 48.622 91.355 73 51 65 36 51 87 1 1 1 1 1 1 6898.6 12387 2073 12263 19122 24970 24970 1 LMELHGEGSSSGK Unmodified 1330.6187 0.61871473 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 6 0.816 1 1 1 41.049 41.049 3 9.8508E-06 10109 TMT1-6 104.17 78.701 214.45 398.8 228.98 297.75 354.4 338.47 203 392 247 291 363 327 3 3 3 3 3 3 22975 12388 1386 12264 19123;19124;19125 24971;24972;24973 24973 3 LMGLEALK Unmodified 873.49937 0.49937486 1161 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 0 0 8 0 1 64.942 64.942 2 0.0036567 19504 TMT1-7 130.34 97.218 520.55 784.16 574.08 498.41 563.19 721.6 492 779 597 497 584 692 1 1 1 1 1 1 83822 12389 1161 12265 19126 24974 24974 1 LMHGILTEQK Unmodified 1168.6274 0.62742892 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 7.5 0.5 1 1 48.652 48.652 3 0.024976 13048 TMT1-7 52.579 28.592 215.85 305.76 251.76 251.64 292.9 332.76 204 305 261 249 302 320 2 2 2 2 2 2 17434 12390 2204 12266 19127;19128 24975;24976 24976 2 LMIEMDGTENK Unmodified 1279.5788 0.57882375 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 0 5 0 1 59.08 59.08 2 1.5641E-16 17523 TMT1-4 182.46 114.47 115.14 206.05 130.49 132.12 174.74 278.57 109 203 138 131 182 266 2 2 2 2 2 2 32425 12391 514 12267 19129 24977;24978 24977 2 LMISDSHISAVAPGTFSDLIK Unmodified 2201.1402 0.14020524 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 1 72.395 72.395 4 0.001439 22385 TMT1-7 50.944 33.027 253.4 344.19 219.62 212.65 259.89 341.17 239 343 232 211 269 327 2 2 2 2 2 2 18939 12392 1067 12268 19130 24979;24980 24979 2 LMLAVVK Unmodified 772.48808 0.48808189 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 62.895 62.895 2 0.011995 16838 TMT1-8 114.67 60.13 564.83 876.05 627.03 589.78 709.67 811.23 534 869 655 586 731 780 2 2 2 2 2 2 54403 12393 555 12269 19131 24981;24982 24981 2 LMLLLEVISGER Oxidation (M) 1387.7745 0.77448709 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 1 0 0 9 0 2 91.818 91.818 2 1.3037E-06 27949 TMT1-8 113.44 86.141 95.464 89.613 109.96 47.701 79.155 128.86 90 92 109 51 82 123 2 2 2 2 2 2 33890 12394 672;195;1022 12270 19132;19133 24983;24984 24983 22 2 LMLLLEVISGER Unmodified 1371.7796 0.77957246 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 9 0 1 98.629 98.629 2 4.2479E-39 30568 TMT1-8 217.45 139.34 246.77 278.25 308.56 297.36 238.93 381.21 233 282 314 293 254 364 3 3 3 3 3 3 83450 12395 672;195;1022 12270 19134 24985;24986;24987 24986 3 LMMDPLTGLNR Unmodified 1259.6366 0.6366134 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 8 0 1 68.403 68.403 2 0.00028352 20856 TMT1-7 81.335 51.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12396 226;227 12271 19135 24988 24988 1 LMMNFTLGVK 2 Oxidation (M) 1184.5934 0.5933516 2231 Q8NGC4 OR10G3 Olfactory receptor 10G3 yes yes 0 0 2 0 0 5 0 1 72.456 72.456 3 0.0032136 22807 TMT1-4 51.445 42.932 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12397 2231 12272 19136 24989 24989 286;287 1 LMNDFSAALNNFQAVQR Unmodified 1937.9418 0.9417802 2128 Q86Y82 STX12 Syntaxin-12 yes yes 0 0 0 0 0 9 0 1 78.49 78.49 3 0.0041338 22983 TMT1-8 50.252 25.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12398 2128 12273 19137 24990 24990 1 LMNETTAVALAYGIYK Unmodified 1756.907 0.90695782 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 no no 0 0 0 0 0 8 0 1 77.622 77.622 3 1.1041E-08 24464 TMT1-7 109.07 87.841 68.26 163.79 110.76 102.93 103.82 159.07 65 160 116 102 109 152 1 1 1 1 1 1 12562 12399 1009 12274 19138 24991 24991 1 LMNIFLK Unmodified 877.50955 0.50954561 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 9 0 1 73.708 73.708 2 0.012526 21118 TMT1-8 112.75 38.411 84.59 132.04 98.115 87.563 89.337 144.56 80 131 102 87 94 138 1 1 1 1 1 1 9815.4 12400 409 12275 19139 24992 24992 1 LMQLVDHR Unmodified 1010.5331 0.5331346 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 7 0 1 47.858 47.858 3 0.016982 12650 TMT1-6 65.246 44.917 115.93 114.33 76.238 64.604 100.89 82.401 109 116 80 65 102 80 1 1 1 1 1 1 15470 12401 2321 12276 19140 24993 24993 1 LMSNLDSNR Unmodified 1048.4971 0.49714303 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 0 6 0 1 43.698 43.698 2 8.8544E-14 11632 TMT1-5 187.82 122.5 298.8 460.02 427.08 252.16 465.44 516.52 283 458 432 262 473 497 1 1 1 1 1 1 56784 12402 899 12277 19141 24994 24994 1 LMTEILGR Unmodified 931.51609 0.51608756 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 7 0 1 62.863 62.863 2 0.0055546 18554 TMT1-6 117.1 42.842 38.179 58.709 25.63 45.635 49.431 52.955 36 58 29 44 51 51 1 1 1 1 1 1 8316.3 12403 204 12278 19142 24995 24995 1 LMVALAK Oxidation (M) 760.4517 0.45169638 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 1 0 0 9 0 1 52.413 52.413 2 0.022088 12726 TMT1-8 92.785 52.582 130.41 174.4 116.4 124.88 139.44 188.97 123 174 123 123 145 181 1 1 1 1 1 1 8769.1 12404 534 12279 19143 24996 24996 88 1 LMVALAK Unmodified 744.45678 0.45678176 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 9 0 1 59.532 59.532 2 0.0085552 15486 TMT1-8 142.42 71.393 727.67 1417.3 752.51 717.5 901.73 1291.8 689 1390 807 713 936 1236 2 2 2 2 2 2 99496 12405 534 12279 19144 24997;24998 24997 2 LMVELSK Unmodified 818.45718 0.45717569 1161 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 0 0 7.5 0.5 1 1 58.704 58.704 2 0.0076983 17086 TMT1-7 77.282 7.284 183.77 297.46 240.83 196.13 199.35 329.04 174 295 248 196 210 314 1 1 1 1 1 1 33552 12406 1161 12280 19145;19146 24999;25000 25000 2 LMVPLLK Unmodified 812.51938 0.51938202 65 O00410;O00410-3;O00410-2;O60518 IPO5;RANBP6 Importin-5;Ran-binding protein 6 yes no 0 0 0 0 0 9 0 1 69.318 69.318 2 0.015048 19408 TMT1-8 99.511 34.948 77.381 117.2 59.997 65.336 113.39 143.87 73 116 65 65 116 138 1 1 1 1 1 1 7678.9 12407 65 12281 19147 25001 25001 1 LMWLFGCPLLLDDVAR Unmodified 1917.9845 0.98449664 124 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 0 9 0 1 99.084 99.084 3 2.0788E-06 30683 TMT1-8 90.367 73.623 7.3961 15.356 6.2965 7.1592 6.1938 23.275 7 15 7 7 7 22 1 1 1 1 1 1 3186.8 12408 124 12282 19148 25002 25002 1 LNADVLK Unmodified 771.44905 0.44905385 1807 Q14C86-3;Q14C86-4;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 51.148 51.148 2 0.043882 14719 TMT1-5 84.476 60.919 139.19 119.33 129 109.5 103.78 151.61 131 123 131 109 109 145 1 1 1 1 1 1 46782 12409 1807 12283 19149 25003 25003 1 LNAFGNAFLNR Unmodified 1235.6411 0.64110515 2654;2802 Q9H4M9;Q9NZN3;Q9NZN3-2 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 9 0 1 64.185 64.185 3 5.1237E-05 17324 TMT1-8 97.597 75.851 54.221 49.905 42.016 52.177 56.459 52.755 51 51 44 51 58 51 1 1 1 1 1 1 17901 12410 2654;2802 12284 19150 25004 25004 1 LNAILFK Unmodified 817.50617 0.5061748 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 9 0 1 66.6 66.6 2 0.013116 18375 TMT1-8 110.61 33.765 265.6 339.26 338.32 370.97 357.22 584.63 251 341 348 364 377 558 1 1 1 1 1 1 77767 12411 228 12285 19151 25005 25005 1 LNAIYQNNLTK Unmodified 1290.6932 0.6932003 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 8 0 1 56.019 56.019 2 5.1862E-13 16004 TMT1-7 179.57 124.49 108.16 130.32 106.07 78.697 128.74 135.97 102 131 109 80 131 131 1 1 1 1 1 1 19910 12412 389 12286 19152 25006 25006 1 LNCQVIGASVDSHFCHLAWVNTPK Unmodified 2752.3214 0.32137427 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 9 0 1 62.795 62.795 4 0.012164 16903 TMT1-8 34.106 19.891 37.938 50.482 73.189 57.857 62.465 83.498 36 51 73 58 65 80 1 1 1 1 1 1 20619 12413 1606 12287 19153 25007 25007 1 LNDFASTVR Unmodified 1021.5193 0.51925868 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 0 6 0 1 49.444 49.444 2 0.0018581 13892 TMT1-5 111.61 62.82 146.1 232.61 135.39 152.84 277.92 261.77 138 230 145 152 281 253 1 1 1 1 1 1 43201 12414 815 12288 19154 25008 25008 1 LNDGNEYLFQAK Unmodified 1410.6779 0.67794416 1546 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 59.953 59.953 2;3 0.00018048 17952 TMT1-4 93.011 64.684 176.66 239.74 221.85 142.09 226.67 336.78 167 240 225 146 234 322 2 2 2 2 2 2 13946 12415 1546 12289 19155;19156 25009;25010 25009 2 LNDGSQITYEK Unmodified 1266.6092 0.6091959 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 5 0 1 47.815 47.815 3 0.0037227 13121 TMT1-4 72.496 50.298 130.54 144.55 118.87 109.67 126.55 158.42 123 146 123 109 131 152 1 1 1 1 1 1 15551 12416 373 12290 19157 25011 25011 1 LNDLEDALQQAK Unmodified 1356.6885 0.68850885 470 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 0 0 5 0 1 68.543 68.543 3 0.00065403 21248 TMT1-4 81.431 54.333 46.598 73.851 40.624 52.029 68.727 152.61 44 73 44 51 73 145 1 1 1 1 1 1 5048.4 + 12417 470 12291 19158 25012 25012 1 LNDTLLLGPDPLGNFLSIAVK Unmodified 2209.2358 0.23582018 47 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 0 9 0 1 99.293 99.293 3 0.01024 30778 TMT1-8 42.041 19.388 30.874 13.386 29.438 22.03 13.886 23.056 29 15 29 22 15 22 1 1 1 1 1 1 1858.9 12418 47 12292 19159 25013 25013 1 LNDYIFSFDK Unmodified 1260.6027 0.60265396 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 74.241 74.241 2 0.00029751 23094 TMT1-6 124.42 71.707 61.576 64.066 56.32 51.221 61.964 106.96 58 65 58 51 65 102 1 1 1 1 1 1 10568 12419 1296 12293 19160 25014 25014 1 LNDYLQIETIQALEELAAK Unmodified 2174.1471 0.14706475 2593 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 0 0 0 6 0 1 97.563 97.563 3 0.00061856 32334 TMT1-5 47.397 29.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12420 2593 12294 19161 25015 25015 1 LNEAAAGLNQAATELVQASR Unmodified 2026.0443 0.044331016 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.14 2.17 1 1 4 1 73.478 73.478 3 2.7607E-61 22594 TMT1-6 177.22 160.23 511.93 577.25 574.48 501.96 547.83 646.35 483 584 586 500 567 621 7 7 7 7 7 7 315610 12421 3010 12295 19162;19163;19164;19165;19166;19167;19168 25016;25017;25018;25019;25020;25021;25022;25023;25024;25025;25026 25021 11 LNEAKEEFTSGGPLGQK Unmodified 1803.9003 0.90029254 1107 P43034;Q5IS43;P43034-2 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 1 6 0 1 57.186 57.186 4 1.5813E-07 16950 TMT1-5 98.507 74.22 138.86 212.3 106.47 125.72 126.32 143.5 131 210 116 123 131 138 1 1 1 1 1 1 12988 12422 1107 12296 19169 25027 25027 1 LNECVDHTPK Unmodified 1211.5605 0.56047157 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 4 0 2 36.159 36.159 3;4 0.00028824 8788 TMT1-3 102.4 67.708 2593.5 3813 3438.4 2542.5 3507.1 4247.1 2454 3802 3506 2574 3604 4078 3 3 3 3 3 3 385390 12423 1506 12297 19170;19171 25028;25029;25030 25029 3 LNEDKPK Unmodified 842.44978 0.44978213 1541 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 1 6 0 1 34.85 34.85 3 0.041049 8144 TMT1-5 65.06 0.96947 244.84 243.56 481.82 365.42 487.94 257.91 232 252 475 369 491 255 1 1 1 1 1 1 15648 12424 1541 12298 19172 25031 25031 1 LNEDMACSVAGITSDANVLTNELR Unmodified 2592.216 0.21596573 893 P25789 PSMA4 Proteasome subunit alpha type-4 yes yes 0 0 0 0 0 5 0 1 80.336 80.336 3 5.9732E-07 25870 TMT1-4 75.404 72.13 31.745 36.493 43.945 29.474 37.06 53.308 30 37 44 30 37 51 2 2 2 2 1 2 9786 12425 893 12299 19173 25032;25033 25032 2 LNEELEKEK Unmodified 1130.5819 0.58191851 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 1 4 0 1 44.093 44.093 3 0.042351 11930 TMT1-3 54.286 18.575 191.35 264.77 256.16 186.43 259.64 292.14 181 265 260 189 266 281 1 1 1 1 1 1 15298 12426 1095 12300 19174 25034 25034 1 LNEHFLNTTDFLDTIK Unmodified 1919.9629 0.9628928 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 71.956 71.956 3 5.9404E-16 22861 TMT1-5 134.14 118.72 465.08 616.02 481.07 462.96 650.65 628.5 439 616 500 461 663 607 2 2 2 2 2 2 201030 12427 1164 12301 19175;19176 25035;25036 25035 2 LNELLEAIK Unmodified 1041.607 0.60701105 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 76.9 76.9 2 0.014315 24136 TMT1-6 83 47.644 53.701 103.5 84.051 80.857 83.635 106.35 51 102 87 80 87 102 2 2 2 2 2 2 7630.1 12428 2911 12302 19177 25037;25038 25038 2 LNELLVK Unmodified 827.51165 0.5116541 1659 Q12931-2;Q12931 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 0 7 0 1 61.467 61.467 2 0.010535 18091 TMT1-6 107.66 68.122 68.373 147.91 105.17 79.602 83.437 113.81 65 145 109 80 87 109 1 1 1 1 1 1 11225 12429 1659 12303 19178 25039 25039 1 LNEMVPLISQACDLLLAHLK Unmodified 2277.2225 0.22249508 876 P24557;P24557-2;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 9 0 2 95.581 95.581 3;4 1.6963E-14 29507 TMT1-8 97.271 73.23 58.314 62.009 65.235 48.548 59.584 57.996 55 63 66 49 61 56 3 3 3 3 3 3 11462 12430 876 12304 19179;19180 25040;25041;25042 25042 3 LNENHSGELWK Unmodified 1325.6364 0.6364137 1700 Q13418;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 5 0 1 45.11 45.11 3 4.4286E-07 12034 TMT1-4 132.86 92.944 1315.5 1671 1472.5 1271.3 1489.1 1601.3 1242 1677 1512 1269 1532 1542 2 2 2 2 2 2 263310 12431 1700 12305 19181 25043;25044 25043 2 LNEQASEEILK Unmodified 1272.6561 0.65614609 1548 Q01105-3;Q01105-4;Q01105-2;Q01105 SET Protein SET yes no 0 0 0 0 0 4 0 1 53.882 53.882 3 0.00095165 15798 TMT1-3 87.216 45.933 84.14 162.09 148.42 132.25 110.87 127.95 80 160 152 131 116 123 1 1 1 1 1 1 15975 12432 1548 12306 19182 25045 25045 1 LNFAVASR Unmodified 876.48175 0.48175096 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 9 0 1 49.886 49.886 2 0.0069286 11757 TMT1-8 121.67 70.215 957.18 1288.3 1241.9 929.69 1144.3 1530.1 905 1291 1262 938 1185 1466 1 1 1 1 1 1 170840 12433 955 12307 19183 25046 25046 1 LNFSHGTHEYHAETIK Unmodified 1882.8962 0.89621022 706;707 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 7 0.816 1 1 1 38.186 38.186 4;5 2.2971E-16 8982 TMT1-6 137.19 101 1268.8 2192.4 1657.2 1333.6 1656.1 1679.7 1202 2167 1714 1339 1697 1620 5 5 5 5 5 5 150190 12434 706;707 12308 19184;19185;19186 25047;25048;25049;25050;25051 25049 5 LNGTDPEDVIR Unmodified 1227.6095 0.60953025 115;879 P19105;O14950;P24844 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 0 0 0 0 0 2.5 0.5 1 1 51.013 51.013 2 3.2785E-23 15429 TMT1-1 195.3 153.88 452 722.28 606.07 454.36 479.38 753.84 428 717 621 457 503 720 4 4 4 4 4 4 217720 12435 115;879 12309 19187;19188 25052;25053;25054;25055 25053 4 LNHNLYEVMSK Oxidation (M) 1362.6602 0.66018561 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 1 0 0 6.5 0.5 1 1 42.891 42.891 3 5.0453E-05 10779 TMT1-6 84.053 66.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12436 2849 12310 19189;19190 25056;25057 25057 318 2 LNHNLYEVMSK Unmodified 1346.6653 0.66527099 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 7 0 2 51.524 51.524 3;4 2.1113E-05 14093 TMT1-6 112.84 81.973 483.91 637.1 544.31 445.81 664.74 728.3 457 638 559 449 679 701 2 2 2 2 2 2 96715 12437 2849 12310 19191;19192 25058;25059 25058 2 LNHQEFK Unmodified 914.46102 0.46101552 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 35.018 35.018 3 0.04635 8242 TMT1-5 50.607 27.777 145.78 147.55 260.12 114.84 217.62 149.43 138 152 254 123 218 146 1 1 1 1 1 1 20905 12438 1737 12311 19193 25060 25060 1 LNHSVAK Unmodified 767.42899 0.42898711 346 O95295 SNAPIN SNARE-associated protein Snapin yes yes 0 0 0 0 0 7 0 1 29.84 29.84 3 0.009007 5621 TMT1-6 47.849 24.292 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12439 346 12312 19194 25061 25061 1 LNHYVLYK Unmodified 1048.5706 0.57056597 162 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 0 0 9 0 1 47.404 47.404 3 0.029296 10788 TMT1-8 47.082 20.963 37.807 88.973 62.524 51.107 48.373 76.438 36 87 65 51 51 73 1 1 1 1 1 1 4904.2 12440 162 12313 19195 25062 25062 1 LNIGDLQVTK Unmodified 1099.6237 0.62372375 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 7 0 1 62.658 62.658 2 5.5686E-05 18520 TMT1-6 145.46 73.765 122.83 167.19 132.78 132.19 163.97 134.97 116 167 138 131 167 131 1 1 1 1 1 1 18952 12441 2930 12314 19196 25063 25063 1 LNIIIIAEGAIDR Unmodified 1409.8242 0.82421447 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 7 0 1 83.517 83.517 2 0.00029473 26660 TMT1-6 97.86 47.253 69.321 32.906 43.293 44.699 43.208 22.219 65 36 44 44 44 22 1 1 1 1 1 1 9303.2 12442 765 12315 19197 25064 25064 1 LNIIIVAEGAIDTQNKPITSEK Unmodified 2366.3057 0.30569066 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 1 7 0 2 74.829 74.829 3;4 6.8851E-29 23273 TMT1-6 135.21 122.53 223.37 241.58 305.49 199.85 203.45 235.11 211 246 305 203 211 226 3 3 3 3 3 3 30642 12443 1559 12316 19198;19199 25065;25066;25067 25065 3 LNIISNLDCVNEVIGIR Unmodified 1941.0353 0.035346234 956 P30153;P30154-4;P30154;P30154-2;P30154-5;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 0 8 0 2 82.941 82.941 2;3 1.1416E-23 26503 TMT1-7 143.94 111.93 146.69 143.61 110.18 134.15 131.36 198.79 138 146 116 131 138 190 4 4 4 4 4 4 51428 12444 956 12317 19200;19201 25068;25069;25070;25071 25071 4 LNILDTLSK Unmodified 1015.5914 0.59136099 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 8 0 1 70.136 70.136 3 0.00048417 21520 TMT1-7 103.7 55.417 154.03 180.38 108.64 118.38 102.56 175.1 145 181 116 116 109 167 1 1 1 1 1 1 10708 12445 1683 12318 19202 25072 25072 1 LNIPVSQVNPR Unmodified 1235.6986 0.69862003 481 P05023-3;P05023-4;P05023;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 0 0 0 0 0 8 0 1 51.607 51.607 2 1.4471E-05 14207 TMT1-7 122.98 71.788 84.913 93.004 76.919 81.544 69.752 83.29 80 94 80 80 73 80 1 1 1 1 1 1 16758 12446 481 12319 19203 25073 25073 1 LNIQPSEADYAVDIR Unmodified 1702.8526 0.85261407 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 4 0 1 61.902 61.902 2 1.5248E-16 18960 TMT1-3 145.52 115.13 38.006 65.783 48.736 51.791 55.671 76.229 36 65 51 51 58 73 1 1 1 1 1 1 20774 12447 2789 12320 19204 25074 25074 1 LNISFPATGCQK Unmodified 1334.6653 0.66527099 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 0 9 0 1 59.985 59.985 3 1.0131E-07 15694 TMT1-8 120.87 70.197 234.39 307.5 199.85 222.38 269.9 219.36 221 307 212 219 275 213 1 1 1 1 1 1 41520 12448 1442 12321 19205 25075 25075 1 LNITVVQAK Unmodified 984.59678 0.59678072 2612 Q9H0E2 TOLLIP Toll-interacting protein yes yes 0 0 0 0 0 8.5 0.5 1 1 55.561 55.561 2 0.00021291 13937 TMT1-8 140.83 78.289 123.57 197.48 163.15 113.86 170.53 181.68 117 196 167 116 174 175 2 2 2 2 2 2 15845 12449 2612 12322 19206;19207 25076;25077 25077 2 LNITYPMLFK Unmodified 1238.6733 0.67331648 2326 Q92890-3;Q92890;Q92890-1 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 0 9 0 2 75.966 75.966 2;3 0.00085065 21985 TMT1-8 90.108 50.063 77.294 125.6 67.46 80.836 137.33 96.285 73 124 73 80 138 94 2 2 2 2 2 2 11146 12450 2326 12323 19208;19209 25078;25079 25078 2 LNKDQWEER Unmodified 1216.5836 0.58364985 894 P26038 MSN Moesin yes yes 0 0 0 0 1 5 0 1 41.433 41.433 3 0.0042588 10603 TMT1-4 85.821 64.52 1523.9 2377.2 1731.7 1351.8 1612.6 2159.5 1441 2358 1795 1359 1672 2069 1 1 1 1 1 1 191270 12451 894 12324 19210 25080 25080 1 LNKPFLFDTK Unmodified 1221.6758 0.67575932 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 9 0 1 59.699 59.699 3 0.002626 15596 TMT1-8 75.695 33.3 222.1 312.34 278.08 185.48 240.71 266.03 210 312 283 189 247 256 1 1 1 1 1 1 15876 12452 920 12325 19211 25081 25081 1 LNLAFIANLFNR Unmodified 1404.7878 0.78776939 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 9 0 2 91.316 91.316 2;3 5.951E-50 27876 TMT1-8 232.83 177.3 439.44 802.83 484.33 529.74 576.55 716.96 416 790 516 521 598 688 3 3 3 3 3 3 333780 12453 690 12326 19212;19213 25082;25083;25084 25082 3 LNLAFVANLFNK Unmodified 1362.766 0.76597131 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 9 0 1 88.775 88.775 3 0.00062399 26916 TMT1-8 76.533 49.052 61.08 78.877 127.07 46.118 109.07 82.168 58 80 124 51 109 80 2 2 2 2 2 2 12634 12454 691 12327 19214 25085;25086 25085 2 LNLDSIIGR Unmodified 999.57129 0.57129425 1413 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 0 0 7.5 0.5 1 1 65.981 65.981 2 0.00070611 19804 TMT1-6 130.31 60.406 323.35 404.93 314.14 284.25 337.55 390.12 305 406 326 283 348 375 3 3 3 3 3 3 96500 12455 1413 12328 19215;19216 25087;25088;25089 25087 3 LNLEAINYMAADGDFK Oxidation (M) 1799.84 0.84000047 586 P09382 LGALS1 Galectin-1 yes yes 0 0 1 0 0 6 0 1 69.3 69.3 3 0.0012741 21741 TMT1-5 71.558 53.42 61.234 118.16 67.932 82.08 69.727 83.29 58 116 73 80 73 80 1 1 1 1 1 1 15344 12456 586 12329 19217 25090 25090 110 1 LNLEAINYMAADGDFK Unmodified 1783.8451 0.84508585 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 6 0 2 76.742 76.742 3;4 1.7546E-23 24651 TMT1-5 169.15 150.73 353.21 758.86 407.25 385.88 508.4 640.02 335 742 436 384 524 614 5 5 5 5 5 5 104020 12457 586 12329 19218;19219 25091;25092;25093;25094;25095 25091 5 LNLFSLDPDIDTLK Unmodified 1602.8505 0.8504888 2375 Q96BY6;Q96BY6-3;Q96BY6-2 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 7 0 1 84.583 84.583 3 5.3219E-05 27066 TMT1-6 89.466 60.454 46.727 65.576 25.886 29.669 25.811 92.005 44 65 29 29 29 87 1 1 1 1 1 1 11062 12458 2375 12330 19220 25096 25096 1 LNLLTCQVK Unmodified 1087.606 0.6059652 156;2911 Q9ULH1;Q9ULH1-2;O43150-2;O43150 ASAP1;ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1;Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 no no 0 0 0 0 0 9 0 1 60.466 60.466 2 0.0017227 15889 TMT1-8 117.31 46.403 77.563 78.855 61.882 74.65 77.141 90.541 73 80 65 73 80 87 1 1 1 1 1 1 7736.8 12459 2911;156 12331 19221 25097 25097 1 LNLPINIIGLAPLCENMPSGK Unmodified 2263.2068 0.20684501 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 9 0 2 88.512 88.512 3;4 0.0005902 26836 TMT1-8 49.089 36.607 30.514 51.238 57.957 35.26 33.69 68.329 29 51 58 36 36 65 1 1 1 1 1 1 4887.8 12460 932 12332 19222;19223 25098;25099 25098 2 LNLVEAFVEDAELR Unmodified 1616.841 0.84098675 1110 P43246-2;P43246 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 0 5 0 1 90.651 90.651 3 0.0033362 29941 TMT1-4 63.29 42.337 30.789 29.338 30.249 6.6362 29.252 22.617 29 30 30 7 29 22 2 2 2 1 2 2 2292.9 12461 1110 12333 19224 25100;25101 25101 2 LNMILVQILK Unmodified 1183.7363 0.73625109 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 1 86.961 86.961 2 0.0063303 26247 TMT1-8 88.37 59.452 23.256 36.266 28.125 21.547 43.759 37.127 22 36 29 22 44 36 1 1 1 1 1 1 4661.5 12462 121 12334 19225 25102 25102 1 LNNLVLFDK Unmodified 1074.6073 0.6073454 1450 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 0 8 0 1 69.851 69.851 2 0.0014914 21407 TMT1-7 118.71 56.449 138.98 158.66 132.16 155.67 137.73 197.54 131 160 138 152 145 189 1 1 1 1 1 1 15062 12463 1450 12335 19226 25103 25103 1 LNPGDIVELTK Unmodified 1197.6605 0.66050319 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 6 0 1 67.95 67.95 2 5.5832E-07 21228 TMT1-5 107.09 71.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12464 722 12336 19227 25104 25104 1 LNPVGAK Unmodified 697.41227 0.41227441 2675 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 0 8 0 1 41.953 41.953 2 0.0038371 10411 TMT1-7 85.359 44.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12465 2675 12337 19228 25105 25105 1 LNQALLDLHALGSAR Unmodified 1590.8842 0.88418897 452 P02792 FTL Ferritin light chain yes yes 0 0 0 0 0 8 0 1 64.079 64.079 3 9.7917E-05 19106 TMT1-7 80.638 59.338 37.672 127.45 52.63 51.395 64.374 36.539 36 123 58 51 65 36 1 1 1 1 1 1 14635 12466 452 12338 19229 25106 25106 1 LNQDQLDAVSK Unmodified 1229.6252 0.62518031 1777 Q14444-2;Q14444 CAPRIN1 Caprin-1 yes no 0 0 0 0 0 5 0 1 50.44 50.44 3 0.0016316 14183 TMT1-4 80.17 60.331 108.19 145.52 87.791 104.18 110.03 189.81 102 145 94 102 116 181 1 1 1 1 1 1 10653 12467 1777 12339 19230 25107 25107 1 LNQNLNDVLVGLEK Unmodified 1567.857 0.85697116 76 O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN1 Myc box-dependent-interacting protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 73.745 73.745 3 3.185E-09 22822 TMT1-6 105.14 99.822 37.966 65.67 55.66 66.545 62.871 60.034 36 65 58 65 65 58 1 1 1 1 1 1 5575.1 12468 76 12340 19231;19232 25108;25109 25109 2 LNQTTFTATR Unmodified 1151.5935 0.59348625 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 7 0 1 43.116 43.116 2 0.0020541 10807 TMT1-6 100.58 74.758 46.602 73.862 39.948 67.187 78.547 59.587 44 73 44 65 80 58 1 1 1 1 1 1 6765.5 12469 390 12341 19233 25110 25110 1 LNQYFQK Unmodified 939.48142 0.48141661 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 8 0 1 54.092 54.092 2 0.0089985 15222 TMT1-7 114.19 32.804 145.88 260.06 148.55 184.81 221.87 236.72 138 256 160 181 228 228 1 1 1 1 1 1 18622 12470 1619 12342 19234 25111 25111 1 LNRPLTLSEK Unmodified 1169.6768 0.67682195 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 43.954 43.954 3 0.0015514 11210 TMT1-7 92.866 61.444 769.34 1158.2 1001.6 741.9 965.24 1146.1 728 1153 1024 750 993 1101 1 1 1 1 1 1 63284 12471 2492 12343 19235 25112 25112 1 LNSHMNALHLGSQANR Unmodified 1761.8693 0.86928396 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 8 0 1 37.792 37.792 4 0.011478 8808 TMT1-7 48.555 32.666 107.22 216.22 190.38 183.59 153.96 205.61 102 213 196 181 162 197 1 1 1 1 1 1 32628 12472 655 12344 19236 25113 25113 1 LNSIKDVEQK Unmodified 1172.6401 0.6401021 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 1 7 0 1 47.398 47.398 3 0.033638 12512 TMT1-6 56.087 26.759 91.811 145.83 135.25 109.04 108.2 236.76 87 145 138 109 116 225 1 1 1 1 1 1 9313.5 12473 1383 12345 19237 25114 25114 1 LNSLMSLVNK Unmodified 1117.6165 0.61652988 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 0 9 0 1 72.257 72.257 3 0.0017151 20538 TMT1-8 78.342 35.095 61.286 125.86 52.605 51.427 62.76 83.489 58 123 58 51 65 80 1 1 1 1 1 1 9483.6 12474 55 12346 19238 25115 25115 1 LNSNTQVVLLSATMPSDVLEVTK Unmodified 2458.2989 0.29889072 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 0 7 0 1 81.274 81.274 3 1.4362E-10 25806 TMT1-6 80.102 60.549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12475 1358 12347 19239 25116 25116 1 LNSNTQVVLLSATMPSDVLEVTKK Unmodified 2586.3939 0.39385374 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 1 8 0 1 74.84 74.84 4 1.5256E-09 23377 TMT1-7 83.059 68.9 37.864 65.387 72.99 42.243 79.694 59.554 36 65 73 44 80 58 1 1 1 1 1 1 9170.9 12476 1358 12348 19240 25117 25117 1 LNSPTDSTPALLSATVTPQK Unmodified 2040.0739 0.07389981 2655 Q9H4X1-2;Q9H4X1 RGCC Regulator of cell cycle RGCC yes no 0 0 0 0 0 7 0 1 64.491 64.491 3 2.6612E-09 19246 TMT1-6 79.635 62.557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12477 2655 12349 19241 25118 25118 1 LNSSGSSEDSFVEIR Unmodified 1625.7533 0.75329395 2386 Q96CV9-3;Q96CV9;Q96CV9-2 OPTN Optineurin yes no 0 0 0 0 0 3 0 1 53.831 53.831 3 6.0493E-11 16772 TMT1-2 104.15 82.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12478 2386 12350 19242 25119 25119 1 LNTGILNK Unmodified 871.51272 0.51271674 654 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 0 8 0 1 52.853 52.853 2 0.026065 14720 TMT1-7 84.615 28.898 123.01 191.4 83.566 135.55 141.08 127.09 116 189 94 131 145 123 1 1 1 1 1 1 16244 12479 654 12351 19243 25120 25120 1 LNTHVKPLIWIESVIEK Unmodified 2018.1564 0.15644765 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 1 9 0 1 75.508 75.508 4 0.00027021 21790 TMT1-8 65.521 39.373 60.819 148.31 112.1 94.505 82.751 113.83 58 145 116 94 87 109 1 1 1 1 1 1 10284 12480 2569 12352 19244 25121 25121 1 LNTLETEEWFFK Unmodified 1555.7559 0.75586013 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 6 0 1 79.191 79.191 3 5.8973E-08 25688 TMT1-5 125.28 104.86 137.54 205.2 154.24 131.79 117.14 189.6 130 204 160 131 124 181 2 2 2 2 2 2 31161 12481 550 12353 19245 25122;25123 25123 2 LNTLLQR Unmodified 856.51305 0.51305109 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 1 51.713 51.713 2 0.0078584 12507 TMT1-8 138.33 30.659 357.8 504.51 392.14 338.5 518.38 625.87 338 503 406 340 531 601 1 1 1 1 1 1 97271 12482 1545 12354 19246 25124 25124 1 LNTLQHYK Unmodified 1015.5451 0.5450795 2912 Q9ULL4;Q9ULL4-2;O43157-2;O43157 PLXNB3;PLXNB1 Plexin-B3;Plexin-B1 yes no 0 0 0 0 0 8 0 1 42.193 42.193 3 0.0020831 10506 TMT1-7 66.621 27.079 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12483 2912 12355 19247 25125 25125 1 LNVAEVTQSEIGQK Unmodified 1514.794 0.79403656 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 4 2.16 1 1 1 59.231 59.231 3 1.0135E-20 17611 TMT1-4 167.22 130.21 1185.9 1343.6 1533.5 1062.1 1372.3 1534.3 1120 1362 1541 1079 1409 1476 5 5 5 5 5 5 366260 12484 2682 12356 19248;19249;19250 25126;25127;25128;25129;25130 25128 5 LNVCVSK Unmodified 818.43202 0.43202358 713 P14866;P14866-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9 HNRNPL;HNRNPLL Heterogeneous nuclear ribonucleoprotein L;Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 0 0 8 0 1 47.199 47.199 2 0.010535 12491 TMT1-7 107.66 25.36 608.01 1012.2 648.65 572.09 535.49 1246.9 575 1000 682 568 578 1184 1 1 1 1 1 1 84680 12485 713 12357 19251 25131 25131 1 LNVDEAFEQLVR Unmodified 1431.7358 0.73579339 628 P10301 RRAS Ras-related protein R-Ras yes yes 0 0 0 0 0 5 0 1 74.529 74.529 2 7.7459E-06 23628 TMT1-4 116.03 100.41 46.47 73.496 62.356 74.755 70.064 83.281 44 73 65 73 73 80 1 1 1 1 1 1 11819 12486 628 12358 19252 25132 25132 1 LNVDFALIHK Unmodified 1168.6604 0.66044361 1360 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 0 0 8 0 1 63.024 63.024 3 0.001574 18686 TMT1-7 87.001 49.279 161.48 247.88 241.77 195.58 225.38 241.95 153 247 246 196 232 233 2 2 2 2 2 2 46510 12487 1360 12359 19253 25133;25134 25133 2 LNVEFALIHK Unmodified 1182.6761 0.67609367 661 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 0 0 0 0 0 8 0 1 62.668 62.668 3 0.002559 18582 TMT1-7 79.659 39.95 130.26 166.42 148.69 115.15 147.73 173.81 123 167 152 116 152 167 1 1 1 1 1 1 19379 12488 661 12360 19254 25135 25135 1 LNVGAPDVTLR Unmodified 1153.6455 0.64552182 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 54.971 54.971 2 3.0828E-08 16097 TMT1-5 155.53 123.58 108.39 130.95 67.252 74.768 53.845 98.668 102 131 73 73 58 94 1 1 1 1 1 1 20198 12489 1632 12361 19255 25136 25136 1 LNVITVGPR Unmodified 967.58147 0.581465 457 P04040 CAT Catalase yes yes 0 0 0 0 0 8.5 0.5 1 1 52.662 52.662 2 0.0017773 12853 TMT1-8 114.89 77.346 207.52 260.63 247.72 233.99 314.39 278.85 196 262 254 233 320 270 2 2 2 2 2 2 60778 12490 457 12362 19256;19257 25137;25138 25138 2 LNVLANVIR Unmodified 1010.6237 0.62366417 1566 Q02218;Q02218-2;Q02218-3;Q9ULD0-3;Q9ULD0-2;Q9ULD0 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 0 0 0 0 0 9 0 1 65.688 65.688 2 0.0017209 17932 TMT1-8 117.39 69.472 84.616 115.92 107.41 70.678 144.06 127.01 80 116 109 73 145 123 1 1 1 1 1 1 18441 12491 1566 12363 19258 25139 25139 1 LNVTEQEK Unmodified 959.49238 0.49237523 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 0 4.33 0.471 2 1 41.63 41.63 2;3 0.00026586 10952 TMT1-3 153.08 74.741 1230.2 1667.6 1386.4 1177.2 1706.4 1734.7 1162 1667 1428 1182 1740 1673 4 4 4 4 4 4 264120 12492 514 12364 19259;19260;19261 25140;25141;25142;25143 25140 4 LNVTVGVDGTLYK Unmodified 1377.7504 0.75038083 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 7 0 1 64.2 64.2 2 2.9088E-28 19095 TMT1-6 201.04 137.56 37.841 73.956 69.627 106.2 60.242 83.561 36 73 73 102 65 80 1 1 1 1 1 1 21262 12493 787 12365 19262 25144 25144 1 LNVVYTEDHVFSSDYYSPLR Unmodified 2403.1383 0.13829098 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 6 0 1 67.285 67.285 3 7.7037E-11 20967 TMT1-5 82.36 71.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12494 1786 12366 19263 25145 25145 1 LNVWDIGGQR Unmodified 1156.5989 0.59890598 1035 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 0 8 0 1 61.795 61.795 2 0.00074904 18284 TMT1-7 107.95 61.98 53.536 118.15 99.445 79.924 84.485 82.869 51 116 102 80 87 80 1 1 1 1 1 1 9190.2 12495 1035 12367 19264 25146 25146 1 LNVWDLSK Unmodified 973.52328 0.52328142 1630 Q09028-3;Q09028;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 no no 0 0 0 0 0 8 0 1 66.073 66.073 2 0.0062943 19944 TMT1-7 107.15 38.308 169.13 262.87 204.97 199.2 207.63 236.06 160 261 213 197 215 227 1 1 1 1 1 1 21468 12496 1630 12368 19265 25147 25147 1 LNWTGTSK Unmodified 905.46068 0.46068117 354 O95433-2;O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 0 9 0 1 49.865 49.865 2 0.013555 11739 TMT1-8 84.213 35.709 68.909 102.99 53.265 66.546 70.441 83.27 65 102 58 65 73 80 1 1 1 1 1 1 6548.1 12497 354 12369 19266 25148 25148 1 LNYKPPPQK Unmodified 1083.6077 0.60767975 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 5 4 1 1 40.951 40.951 3 0.00095253 8364 TMT1-8 102.61 64.887 1907.5 2856.4 2130.9 1975.4 2641.7 2702.6 1803 2839 2218 1969 2701 2606 4 4 4 4 4 4 162350 12498 1269 12370 19267;19268 25149;25150;25151;25152 25151 4 LNYLDILMR Unmodified 1149.6216 0.62161526 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 1 77.354 77.354 2 0.00019782 22609 TMT1-8 142.56 86.184 177.13 208.66 169.81 113.28 180.04 149.43 167 210 174 116 182 145 2 2 2 2 2 2 29954 12499 856 12371 19269 25153;25154 25154 2 LNYSDHDVIK Unmodified 1202.5932 0.5931519 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 0 5 0 1 44.191 44.191 3 0.00073569 11718 TMT1-4 95.018 50.254 160.03 319.2 245.32 311.53 209.36 309.56 152 314 258 302 224 296 1 1 1 1 1 1 20803 12500 2387 12372 19270 25155 25155 1 LPACVVDCGTGYTK Unmodified 1539.7061 0.70614953 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 6.33 0.471 2 1 56.178 56.178 3;4 8.6893E-15 16543 TMT1-5 135.58 128.38 983.48 1191.8 1051.8 929.87 1098 1383.2 928 1199 1081 927 1136 1327 5 5 5 5 5 5 268520 12501 1379 12373 19271;19272;19273 25156;25157;25158;25159;25160 25156 5 LPADTCLLEFAR Unmodified 1404.7071 0.7071358 2222 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 0 6 0 1 69.783 69.783 2 0.013649 21955 TMT1-5 71.066 32.498 37.831 73.928 71.363 67.269 32.731 53.432 36 73 73 66 36 51 1 1 1 1 1 1 7985.6 12502 2222 12374 19274 25161 25161 1 LPAELGPQLLHK Unmodified 1314.766 0.76597131 2770 Q9NX08 COMMD8 COMM domain-containing protein 8 yes yes 0 0 0 0 0 8 0 1 60.816 60.816 3 0.0026108 17830 TMT1-7 71.219 28.135 176.77 286.46 163.73 169.23 188.13 265.4 167 283 175 167 196 254 2 2 2 2 2 2 13909 12503 2770 12375 19275 25162;25163 25162 2 LPAFELLIPFSCEDLSSLGPAPASLCQLVAQR Unmodified 3498.7891 0.78909788 2110 Q86UT6;Q86UT6-2 NLRX1 NLR family member X1 yes no 0 0 0 0 0 9 0 1 104.01 104.01 4 0.02671 32420 TMT1-8 26.06 18.872 0 4.1364 7.1556 3.8213 6.6038 15.802 0 4 7 4 7 15 0 1 1 1 1 1 2351.2 12504 2110 12376 19276 25164 25164 1 LPAGAEPYEFVSLEWLQK Unmodified 2076.0568 0.056793183 2111 Q86UV5-3;Q86UV5-2;Q86UV5;Q86UV5-8 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 0 0 7 0 1 87.075 87.075 3 0.003674 28001 TMT1-6 40.962 18.808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12505 2111 12377 19277 25165 25165 1 LPALGLGVLQLQLGLDGHR Unmodified 1969.1473 0.14727994 1188 P49641-2;P49641-1;P49641 MAN2A2 Alpha-mannosidase 2x yes no 0 0 0 0 0 9 0 1 82.262 82.262 3 2.1189E-09 24494 TMT1-8 84.375 72.509 23.335 28.932 20.959 22.265 28.277 30.107 22 29 22 22 29 29 1 1 1 1 1 1 2709.3 12506 1188 12378 19278 25166 25166 1 LPANHPLLTGQR Unmodified 1315.7361 0.73606817 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 9 0 1 40.106 40.106 3 0.00047744 8179 TMT1-8 80.555 46.302 88.322 81.44 54.805 58.798 70.688 86.461 83 83 58 58 73 83 1 1 1 1 1 1 20705 12507 1057 12379 19279 25167 25167 1 LPAPFEESLDLPLWK Unmodified 1753.9291 0.92907347 1935 Q460N5-4;Q460N5-1;Q460N5;Q460N5-3 PARP14 Poly [ADP-ribose] polymerase 14 yes no 0 0 0 0 0 7 0 1 88.703 88.703 3 0.0039497 28544 TMT1-6 59.607 39.768 23.368 21.469 21.756 14.422 35.967 29.888 22 22 22 15 36 29 1 1 1 1 1 1 4200.1 12508 1935 12380 19280 25168 25168 1 LPAQLAWEALEQR Unmodified 1523.8096 0.80962704 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 7 0 1 74.88 74.88 2 1.0618E-21 23331 TMT1-6 190.36 147.76 84.447 123.01 129.84 92.007 159.3 111.65 80 123 131 94 160 109 1 1 1 1 1 1 41220 12509 2066 12381 19281 25169 25169 1 LPAVVTADLR Unmodified 1053.6182 0.61824444 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 7 0 1 60.059 60.059 2 0.020101 17471 TMT1-6 75.825 21.112 68.972 79.423 62.599 58.76 48.021 76.448 65 80 65 58 51 73 1 1 1 1 1 1 8246.8 12510 1055 12382 19282 25170 25170 1 LPAYFVVPTPLPEENVQR Unmodified 2068.0993 0.099326699 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 7 0 1 76.92 76.92 3 5.8427E-06 24097 TMT1-6 83.37 69.957 15.961 14.715 10.101 18.8 14.438 11.314 15 15 11 18 15 11 1 1 1 1 1 1 9488.4 12511 2596 12383 19283 25171 25171 1 LPCIFICENNR Unmodified 1434.6748 0.67478982 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 8 0 1 64.928 64.928 2 1.2988E-06 19486 TMT1-7 140.45 131.93 46.529 49.916 72.428 74.715 40.252 68.141 44 51 73 73 44 65 1 1 1 1 1 1 13446 12512 566 12384 19284 25172 25172 1 LPDAAEPCLPGALFR Unmodified 1625.8236 0.82356254 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 6 0 1 71.753 71.753 3 0.0038103 22720 TMT1-5 43.548 21.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12513 817 12385 19285 25173 25173 1 LPDAYER Unmodified 862.41848 0.418482 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 3 0 1 41.62 41.62 2 0.0094265 11904 TMT1-2 112.37 49.083 460.24 555.24 444.72 487.03 474.24 585.56 434 558 464 478 494 562 2 2 2 2 2 2 128750 12514 655 12386 19286 25174;25175 25174 2 LPDDQIPK Unmodified 924.49165 0.49164694 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 5 0 1 50.113 50.113 2 0.030675 14040 TMT1-4 81.296 42.505 200.29 197.18 253.97 179.93 263.31 193.96 189 202 254 183 266 189 1 1 1 1 1 1 27836 12515 1559 12387 19287 25176 25176 1 LPDGSEIPLPPILLGR Unmodified 1685.9716 0.97160699 2434 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase yes yes 0 0 0 0 0 7.5 0.5 1 1 85.941 85.941 3 3.3442E-05 27625 TMT1-7 80.706 67.043 39.113 58.248 49.453 45.726 27.183 61.052 37 58 51 45 30 58 2 2 2 2 2 2 13652 12516 2434 12388 19288;19289 25177;25178;25179 25179 3 LPDGYEFK Unmodified 967.4651 0.46509784 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 5.33 0.471 2 1 57.422 57.422 2;3 0.021117 16852 TMT1-4 62.107 34.583 399.56 889.43 620.58 540.83 601.41 739.7 380 871 647 539 623 710 3 3 3 3 3 3 366580 12517 586 12389 19290;19291;19292 25180;25181;25182 25180 3 LPDLKDAEAVQK Unmodified 1325.7191 0.7190807 1849 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 0 0 0 0 1 6 0 1 54.571 54.571 3 0.033094 15975 TMT1-5 52.555 32.716 160.86 275.12 142.01 115.25 163.18 180.83 152 271 152 116 167 174 1 1 1 1 1 1 6627.5 12518 1849 12390 19293 25183 25183 1 LPDPFTPNLK Unmodified 1140.6179 0.61791009 10 A5YKK6-2;A5YKK6;A5YKK6-3 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 0 8 0 1 66.926 66.926 3 0.0055905 20275 TMT1-7 71.349 44.02 30.615 59.074 34.296 21.48 27.764 46.112 29 58 36 22 29 44 1 1 1 1 1 1 3578.1 12519 10 12391 19294 25184 25184 1 LPDSFKDSPSK Unmodified 1219.6085 0.60846762 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 1 7 0 1 48.182 48.182 3 0.01323 12824 TMT1-6 64.65 37.864 1020.5 1546.8 1372.9 1084.3 1168.9 1853.5 966 1540 1404 1087 1226 1770 1 1 1 1 1 1 133630 12520 906 12392 19295 25185 25185 1 LPDSPALAK Unmodified 910.51238 0.51238239 1724 Q13586 STIM1 Stromal interaction molecule 1 yes yes 0 0 0 0 0 6 0 1 51.519 51.519 2 0.0022823 14749 TMT1-5 76.827 13.347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12521 1724 12393 19296 25186 25186 1 LPDVYGVFQFK Unmodified 1311.6863 0.68632401 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 9 0 1 78.516 78.516 3 0.0056469 23023 TMT1-8 61.344 25.802 153.63 187.9 169.76 145.05 176.45 211.36 145 189 174 145 182 203 2 2 2 2 2 2 34833 12522 1063 12394 19297 25187;25188 25188 2 LPEAVQLIEK Unmodified 1138.6598 0.65977491 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 0 6 0 1 67.718 67.718 2 0.0045466 21120 TMT1-5 92.611 73.939 53.952 88.012 54.933 50.978 79.293 59.565 51 87 58 51 80 58 1 1 1 1 1 1 6085.4 12523 2490 12395 19298 25189 25189 1 LPEDPLLSGLLDSPALK Unmodified 1776.9873 0.98731663 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 6.5 0.5 1 1 87.258 87.258 3 1.9871E-14 28059 TMT1-6 101.62 76.686 77.47 87.231 70.436 65.669 62.655 67.502 73 88 73 65 65 65 2 2 2 2 2 2 12824 12524 1176 12396 19299;19300 25190;25191;25192 25192 3 LPEEWSQWLGGSSWPGYVR Unmodified 2233.0593 0.059252799 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 9 0 1 85.962 85.962 2 0.0016639 25863 TMT1-8 58.32 34.644 0 15.867 5.5772 23.454 13.821 23.058 0 15 7 22 15 22 0 1 1 1 1 1 4736.6 12525 476 12397 19301 25193 25193 1 LPEEWSQWLGGSSWPGYVRPLPPAAIESPAVAAPAYSR Unmodified 4092.0534 0.053386145 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 1 9 0 1 85.811 85.811 4 4.2638E-11 25785 TMT1-8 65.345 54.638 30.836 29.47 22.186 38.846 14.475 47.557 29 30 22 37 15 45 2 2 1 2 1 2 16754 12526 476 12398 19302 25194;25195 25194 2 LPEGDLGKEIEQK Unmodified 1454.7617 0.76167379 1477 P63241;P63241-2;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 0 0 0 0 1 5 0 1 53.586 53.586 4 0.00026047 15407 TMT1-4 87.498 59.147 160.56 244.05 219.91 157.27 239.3 253.28 152 243 224 160 244 244 1 1 1 1 1 1 16306 12527 1477 12399 19303 25196 25196 1 LPEGTLGHIK Unmodified 1063.6026 0.60259438 2149 Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 PNPLA6 Neuropathy target esterase yes no 0 0 0 0 0 7 0 1 47.681 47.681 3 0.0079857 12605 TMT1-6 45.307 17.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12528 2149 12400 19304 25197 25197 1 LPEHCIEYVR Unmodified 1314.6391 0.63905624 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 4 0 1 42.187 42.187 3 0.00056627 11167 TMT1-3 97.813 73.522 60.955 117.38 115.45 60.87 175.13 118.66 58 116 116 65 174 116 1 1 1 1 1 1 17247 12529 2241 12401 19305 25198 25198 1 LPEHEINR Unmodified 1006.5196 0.51959303 206 O43815;O43815-2 STRN Striatin yes no 0 0 0 0 0 3 0 1 31.712 31.712 3 0.012216 8010 TMT1-2 70.919 31.701 38.049 65.902 41.446 45.258 19.341 46.352 36 65 44 44 22 44 1 1 1 1 1 1 2885.7 12530 206 12402 19306 25199 25199 1 LPELTRPQPCPLPR Unmodified 1672.9083 0.90829523 2080 Q7L591 DOK3 Docking protein 3 yes yes 0 0 0 0 1 8 0 1 50.432 50.432 3 0.0080641 13735 TMT1-7 61.11 36.319 99.961 108.24 59.659 82.46 75.72 121.5 94 109 65 80 80 116 1 1 1 1 1 1 11971 12531 2080 12403 19307 25200 25200 1 LPETIDLGALYLSMK Unmodified 1662.8902 0.89024513 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 8.4 0.8 1 1 3 87.977 87.977 2;3;4 6.5598E-18 26662 TMT1-8 135.02 93.972 831.79 1231.1 903.88 813.06 1094.3 1648.8 786 1224 941 812 1136 1576 8 8 8 8 8 8 274480 12532 567 12404 19308;19309;19310;19311;19312 25201;25202;25203;25204;25205;25206;25207;25208;25209 25209 9 LPETIDLGALYLSMK Oxidation (M) 1678.8852 0.88515975 567 P08567 PLEK Pleckstrin yes yes 0 0 1 0 0 8.33 0.471 2 1 81.427 81.427 3 4.0464E-05 24108 TMT1-8 76.358 40.68 53.941 80.424 63.312 43.126 63.399 76.009 51 80 65 44 65 73 1 1 1 1 1 1 6644.1 12533 567 12404 19313;19314;19315 25210;25211;25212 25212 105 3 LPETIDLGALYLSMKDTEK Unmodified 2136.1024 0.10242275 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 8 0 2 81.581 81.581 3;4 1.2853E-09 26007 TMT1-7 95.666 73.548 207.45 290.65 234.6 147.96 223.14 431.76 196 290 240 152 234 411 2 2 2 2 2 2 39565 12534 567 12405 19316;19317 25213;25214 25214 2 LPETNLFETEETRK Unmodified 1705.8523 0.85227972 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 1 5 0 1 55.129 55.129 3 0.00023384 16019 TMT1-4 82.349 57.849 153.04 203.54 254.9 155.88 202.27 206.36 145 205 254 160 207 199 1 1 1 1 1 1 24477 12535 1820 12406 19318 25215 25215 1 LPEVEVPQHL Unmodified 1159.6237 0.62372375 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 4 0 1 61.775 61.775 2 0.00339 18928 TMT1-3 96.311 75.157 38.039 58.319 49.522 44.199 50.047 36.948 36 58 51 44 51 36 1 1 1 1 1 1 9978 12536 1572 12407 19319 25216 25216 1 LPEVQQATK Unmodified 1012.5553 0.55530983 1703 Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428;Q13428-3;Q13428-4 TCOF1 Treacle protein yes no 0 0 0 0 0 6 0 1 46.083 46.083 2 0.0093389 12598 TMT1-5 60.102 23.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12537 1703 12408 19320 25217 25217 1 LPFAAAQIGNSFR Unmodified 1390.7357 0.73573382 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 67.497 67.497 2 1.0922E-05 18671 TMT1-8 105.2 65.159 68.951 63.175 79.87 57.296 71.123 75.788 65 65 80 58 73 73 1 1 1 1 1 1 16377 12538 1084 12409 19321 25218 25218 1 LPFCGHK Unmodified 857.42179 0.42179324 3019 Q9Y4P8-3;Q9Y4P8-2;Q9Y4P8-4;Q9Y4P8-5;Q9Y4P8-6;Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 yes no 0 0 0 0 0 9 0 1 42.408 42.408 3 0.04507 8892 TMT1-8 46.37 13.25 99.854 100.38 84.354 73.049 91.067 113.6 94 102 87 73 94 109 1 1 1 1 1 1 4331.9 12539 3019 12410 19322 25219 25219 1 LPFLVMIIK Unmodified 1072.6719 0.67185992 3050 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 0 7 0 1 50.876 50.876 3 0.016355 13848 TMT1-6 60.59 11.172 202.44 354.78 301.17 195.32 341.49 333.51 192 351 307 201 346 322 1 1 1 1 1 1 13682 12540 3050 12411 19323 25220 25220 1 LPFPIIDDR Unmodified 1084.5917 0.59169534 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 4.67 2.62 1 1 1 71.179 71.179 2 1.7389E-09 21834 TMT1-6 178.3 162.64 1538.1 2213.2 2194.3 1507.8 2139 2310.8 1456 2212 2220 1536 2187 2225 6 6 6 6 6 6 594670 12541 945 12412 19324;19325;19326 25221;25222;25223;25224;25225;25226 25225 6 LPFTALGSGQDAALAVLEDR Unmodified 2043.0637 0.063669474 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 0 6.67 0.471 1 2 83.121 83.121 2;3 8.5996E-18 27154 TMT1-5 122.94 86.813 91.95 130.49 161.01 85.673 135.44 175.22 87 131 160 88 139 168 3 4 4 3 4 4 70271 12542 1069 12413 19327;19328;19329 25227;25228;25229;25230 25228 4 LPFTDGDAQQLQR Unmodified 1487.7369 0.73685603 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 5 0 1 56.792 56.792 2 0.00045004 16640 TMT1-4 93.839 67.723 38.175 58.697 26.357 29.325 42.595 60.613 36 58 29 29 44 58 1 1 1 1 1 1 9193.9 12543 2004 12414 19330 25231 25231 1 LPGDIQVVPIGVGPNANVQELER Unmodified 2413.2965 0.29652296 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 73.972 73.972 3 1.1456E-09 23423 TMT1-4 88.836 72.697 70.155 55.911 64.059 57.539 108.29 89.652 66 58 65 58 109 87 2 2 2 2 2 2 25840 12544 471 12415 19331;19332 25232;25233 25232 2 LPGDNALDMFQK Unmodified 1347.6493 0.64928657 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6.5 0.5 1 1 69.418 69.418 3 1.502E-06 21158 TMT1-6 116.03 55.923 122.82 167.16 134.58 91.765 157.18 173.54 116 167 138 94 160 167 1 1 1 1 1 1 24496 12545 772 12416 19333;19334 25234;25235 25235 2 LPGELEPVQATQNK Unmodified 1522.7991 0.79912193 302 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 0 5 0 1 55.063 55.063 3 0.045922 16013 TMT1-4 39.427 13.303 84.391 146.6 119.3 102.55 97.024 144.34 80 145 123 102 102 138 1 1 1 1 1 1 11437 12546 302 12417 19335 25236 25236 1 LPGGELNPGEDEVEGLKR Unmodified 1907.9589 0.95887005 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 1 4 0 1 55.757 55.757 3 1.4981E-08 16534 TMT1-3 103.39 86.11 99.635 138.63 88.66 94.922 134.81 150.72 94 138 94 94 138 145 1 1 1 1 1 1 24383 12547 204 12418 19336 25237 25237 1 LPGLLGNFPGPFEEEMK Unmodified 1873.9284 0.92842155 1714 Q13510-2;Q13510 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 7 0 1 85.014 85.014 3 0.00020756 27186 TMT1-6 73.983 63.349 30.582 66.538 33.512 29.041 35.038 37.376 29 65 36 29 36 36 1 1 1 1 1 1 11724 12548 1714 12419 19337 25238 25238 1 LPGPTLWASYSLEYGK Unmodified 1780.9036 0.903587 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 9 0 1 77.201 77.201 3 1.1023E-16 22483 TMT1-8 122.93 100.72 154.57 234.96 150.99 162.86 160.44 196.9 146 233 160 160 167 189 3 3 3 3 3 3 21115 12549 541 12420 19338 25239;25240;25241 25239 3 LPGQDNLVK Unmodified 982.54475 0.54474515 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 6 0 1 50.207 50.207 2 0.012328 14237 TMT1-5 85.731 41.923 84.592 123.41 105.2 110.06 149.29 135.39 80 123 109 109 152 131 1 1 1 1 1 1 14472 12550 1095 12421 19339 25242 25242 1 LPHLPGLEDLGIQATPLELK Unmodified 2153.2096 0.20960543 1906 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 80.577 80.577 3 5.7285E-14 25558 TMT1-7 114.4 96.7 69.084 55.989 63.686 65.909 71.277 59.794 65 58 65 65 73 58 2 2 2 2 2 2 12642 12551 1906 12422 19340;19341 25243;25244 25244 2 LPHVLLLQLGTTFFK Unmodified 1726.0182 0.018163252 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 9 0 1 83.562 83.562 3 5.8002E-06 24961 TMT1-8 91.441 72.695 77.364 102.05 75.747 96.53 90.244 106.16 73 102 80 94 94 102 1 1 1 1 1 1 9471.9 12552 204 12423 19342 25245 25245 1 LPIDVTEGEVISLGLPFGK Unmodified 1983.0928 0.092844338 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 7 0 2 91.504 91.504 3;4 8.4434E-10 29680 TMT1-6 97.579 79.662 31.773 59.238 19.827 37.791 33.83 60.863 30 58 22 36 36 58 2 2 1 1 2 2 5379.8 12553 901 12424 19343;19344 25246;25247 25247 2 LPIFFFGTHETAFLGPK Unmodified 1921.0138 0.013806156 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 0 9 0 1 80.188 80.188 3 3.6225E-10 23657 TMT1-8 97.417 73.483 46.809 26.95 44.851 20.283 57.926 52.713 44 29 44 22 58 51 1 1 1 1 1 1 6109.3 12554 279 12425 19345 25248 25248 1 LPIGDVATQYFADR Unmodified 1564.7886 0.78855725 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 6 0 1 71.055 71.055 2 1.0757E-21 22398 TMT1-5 172.74 141.1 93.517 77.362 86.879 72.36 61.541 90.986 88 80 88 72 65 87 2 2 2 2 2 2 27524 12555 2496 12426 19346 25249;25250 25249 2 LPIPESQVITINPELPVEEAAEDYAK Unmodified 2864.4695 0.4695211 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 4.67 0.471 1 2 84.795 84.795 3;4 7.5036E-08 27684 TMT1-4 69.649 56.461 77.057 124.94 107.96 71.3 109.22 74.701 73 124 110 73 110 73 3 3 3 3 3 3 48723 12556 349 12427 19347;19348;19349 25251;25252;25253 25253 3 LPITVLNGAPGFINLCDALNAWQLVK Unmodified 2836.531 0.53095634 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 1 103.75 103.75 3 4.6981E-05 32365 TMT1-8 49.25 34.941 7.4491 3.6314 7.3186 0 3.9316 7.3498 7 4 7 0 4 7 1 1 1 0 1 1 1306.3 12557 981 12428 19350 25254 25254 1 LPIVNEDDELVAIIAR Unmodified 1778.9778 0.97781458 667 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 0 5 0 1 82.462 82.462 3 7.0098E-07 26735 TMT1-4 99.344 81.206 23.415 21.598 13.806 22.682 28.771 15.169 22 22 15 22 29 15 1 1 1 1 1 1 5958.8 12558 667 12429 19351 25255 25255 1 LPLALTNWR Unmodified 1082.6237 0.62366417 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 9 0 1 68.996 68.996 2 0.0016797 19229 TMT1-8 119.21 76.736 122.43 228.65 149.1 193.14 241.76 194.58 116 225 159 189 246 189 2 2 2 2 2 2 37857 12559 699 12430 19352 25256;25257 25256 2 LPLEHLVEEQVAAVTFVPVSK Unmodified 2304.2729 0.27293397 2417 Q96I15-2;Q96I15 SCLY Selenocysteine lyase yes no 0 0 0 0 0 7 0 1 84.746 84.746 4 2.7313E-10 27233 TMT1-6 92.31 77.148 15.822 29.439 20.96 22.413 20.392 46.322 15 29 22 22 22 44 1 1 1 1 1 1 3492.5 12560 2417 12431 19353 25258 25258 1 LPLGLLLHPFR Unmodified 1274.7863 0.78631282 358 O95487-2;O95487;O95487-3 SEC24B Protein transport protein Sec24B yes no 0 0 0 0 0 9 0 1 75.595 75.595 3 4.8624E-05 21882 TMT1-8 98.249 72.812 15.849 14.404 29.122 29.44 27.691 37.586 15 15 29 29 29 36 1 1 1 1 1 1 2856 12561 358 12432 19354 25259 25259 1 LPLILVGNK Unmodified 965.62735 0.62735256 2146 Q8IXI2-4;Q8IXI2;Q8IXI2-5;Q8IXI2-2;Q8IXI2-7;Q8IXI2-3;Q8IXI2-6 RHOT1 Mitochondrial Rho GTPase 1 yes no 0 0 0 0 0 9 0 1 70.399 70.399 2 0.0016327 19825 TMT1-8 121.29 75.574 54.062 64.573 56.316 51.482 48.099 83.907 51 65 58 51 51 80 1 1 1 1 1 1 5985.5 12562 2146 12433 19355 25260 25260 1 LPLLPHEVR Unmodified 1072.6393 0.63931423 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 7 0 1 49.413 49.413 3 0.0015123 13327 TMT1-6 92.051 45.661 107.54 214.94 138.29 115.77 147.45 181.28 102 211 145 116 152 174 2 2 2 2 2 2 24878 12563 193 12434 19356 25261;25262 25262 2 LPLMECVQMTK Unmodified 1348.6553 0.65529993 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 8 0 1 67.257 67.257 3 0.040257 20432 TMT1-7 45.915 31.354 46.743 42.954 42.464 52.328 46.998 114.85 44 44 44 51 51 109 1 1 1 1 1 1 5939.9 12564 765 12435 19357 25263 25263 1 LPLQDVYK Unmodified 974.54368 0.54368251 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 7 0 1 59.105 59.105 2 0.0020906 17082 TMT1-6 138.54 81.264 1957.1 3347.7 2398.2 2010.2 3200.5 2498 1853 3308 2494 2025 3230 2429 2 2 2 2 2 2 544050 12565 1490 12436 19358 25264;25265 25264 2 LPLQLDDAVRPEAEGEEEGR Unmodified 2222.0815 0.081504383 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 2.5 0.5 1 1 58.794 58.794 3 1.886E-30 18630 TMT1-2 143.33 121.53 153.74 204.4 136.9 156.02 162.07 158.47 145 204 145 153 167 153 3 3 3 3 3 3 65691 12566 714 12437 19359;19360 25266;25267;25268 25267 3 LPLVVEDFVK Unmodified 1157.6696 0.66961131 2196 Q8NB37-3;Q8NB37;Q8NB37-2 PDDC1 Parkinson disease 7 domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 78.908 78.908 2 0.038325 24947 TMT1-6 66.568 22.864 61.89 26.085 35.787 28.905 35.045 37.376 58 29 36 29 36 36 1 1 1 1 1 1 10765 12567 2196 12438 19361 25269 25269 1 LPNAGTQVR Unmodified 954.52468 0.52467841 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7 0 1 37.177 37.177 2 0.00036786 8450 TMT1-6 139.74 90.952 37.965 43.002 75.038 26.416 42.986 53.139 36 44 73 29 44 51 1 1 1 1 1 1 5088 12568 856 12439 19362 25270 25270 1 LPNFGFVVFDDSEPVQK Unmodified 1936.9571 0.95707914 1689 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 0 7 0 1 82.789 82.789 3 6.6023E-19 26399 TMT1-6 134.44 107.9 77.318 140.77 50.552 75.602 62.439 90.96 73 138 58 73 66 87 2 2 2 2 2 2 16694 12569 1689 12440 19363 25271;25272 25271 2 LPNFGFVVFDDSEPVQR Unmodified 1964.9632 0.96322715 2924 Q9UN86-2;Q9UN86 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 0 7 0 1 82.053 82.053 3 1.1728E-05 26077 TMT1-6 84.195 72.774 23.116 35.876 52.016 20.137 43.018 60.6 22 36 51 22 44 58 1 1 1 1 1 1 13124 12570 2924 12441 19364 25273 25273 1 LPNLSSLTLSR Unmodified 1199.6874 0.68738664 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 66.162 66.162 2 1.9111E-16 18193 TMT1-8 177.57 113.89 134.82 537.81 508.93 417.42 543.28 678.46 131 522 518 419 560 651 2 2 2 2 2 2 148840 12571 1067 12442 19365 25274;25275 25275 2 LPNLTHLNLSGNK Unmodified 1419.7834 0.78341229 2311 Q92688-2;Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 0 9 0 1 57.134 57.134 3 2.3585E-10 14607 TMT1-8 121.56 87.598 333.45 712.37 340.26 375.75 445.4 477.65 316 696 371 370 458 460 1 1 1 1 1 1 52455 12572 2311 12443 19366 25276 25276 1 LPNLVDMAAQVAAGMAYIER Unmodified 2132.0758 0.07583084 505 P06241-3;P06241-2;P06241 FYN Tyrosine-protein kinase Fyn yes no 0 0 0 0 0 9 0 1 102.53 102.53 3 4.6076E-06 31996 TMT1-8 69.088 52.01 23.324 37.054 44.356 20.461 50.039 68.928 22 37 44 22 51 66 1 2 2 2 2 2 5450.2 12573 505 12444 19367 25277;25278 25277 2 LPNSVLGK Unmodified 826.49125 0.49125301 2802;2622 Q9NZN3;Q9H223 EHD3;EHD4 EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 0 0 0 9 0 1 53.397 53.397 2 0.007419 13113 TMT1-8 109.71 62.632 123.07 136.53 119.72 102.12 118.52 158.65 116 138 123 102 123 152 1 1 1 1 1 1 18512 12574 2802;2622 12445 19368 25279 25279 1 LPPGEYVVVPSTFEPNKEGDFVLR Unmodified 2688.3799 0.37991824 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 6.25 0.433 3 1 71.798 71.798 3;4;5 2.0703E-13 22808 TMT1-5 100.76 85.254 323 452.5 334.08 306.97 344.52 400.58 305 451 348 305 356 385 5 5 5 5 5 5 77190 12575 536 12446 19369;19370;19371;19372 25280;25281;25282;25283;25284 25282 5 LPPKSEVSSDEDIQFR Unmodified 1845.9109 0.91085723 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 1 5 0 1 51.391 51.391 3 2.1478E-05 14539 TMT1-4 88.203 69.38 145.61 249.6 202.67 198.53 192.5 312.18 138 247 210 196 203 298 2 2 2 2 2 2 18041 12576 1076 12447 19373 25285;25286 25285 2 LPPKVESLESLYFTPIPAR Unmodified 2156.1881 0.18814171 1805 Q14980-2;Q14980;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 1 9 0 1 74.493 74.493 3 0.0014669 21434 TMT1-8 53.037 22.885 23.216 44.789 27.618 21.449 50.543 52.924 22 44 29 22 51 51 1 1 1 1 1 1 3676.1 12577 1805 12448 19374 25287 25287 1 LPPPKPLPGTLK Unmodified 1256.7856 0.78564412 101 O14672;O14672-2 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes no 0 0 0 0 1 9 0 1 52.644 52.644 3 0.00079096 12857 TMT1-8 77.593 60.226 68.305 123.98 137.01 101.49 97.073 144.34 65 123 138 102 102 138 1 1 1 1 1 1 9954.5 12578 101 12449 19375 25288 25288 1 LPPQQIEK Unmodified 951.53893 0.53893149 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 6 0 1 45.404 45.404 2 0.038805 12416 TMT1-5 77.732 42.437 54.034 80.684 47.417 59.522 55.609 67.703 51 80 51 58 58 65 1 1 1 1 1 1 7010.6 12579 1144;1145 12450 19376 25289 25289 1 LPPVLSHPIFDNR Unmodified 1503.8198 0.8197978 1581 Q04206-2;Q04206-3;Q04206-4;Q04206 RELA Transcription factor p65 yes no 0 0 0 0 0 9 0 1 60.949 60.949 3 2.0541E-06 16086 TMT1-8 103.97 69.172 138.74 165.57 165.32 106.49 148.37 197.24 131 167 167 109 153 189 2 2 2 2 2 2 9877.1 12580 1581 12451 19377 25290;25291 25290 2 LPQFVQSADLEVQER Unmodified 1757.8948 0.89481323 97 O14617-4;O14617;O14617-5;O14617-3;O14617-2 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 5 0 1 66.509 66.509 3 0.00022827 20498 TMT1-4 77.746 73.265 30.741 51.87 19.218 29.598 50.718 36.929 29 51 22 29 51 36 1 1 1 1 1 1 8451.4 12581 97 12452 19378 25292 25292 1 LPQLPITNFSR Unmodified 1284.719 0.71902112 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 4 1 1 67.955 67.955 2 1.3051E-38 18720 TMT1-8 219.72 169.08 1670.7 2130.3 1971.3 1703.8 1842.9 2294.7 1578 2139 2018 1698 1912 2202 4 4 4 4 4 4 720910 12582 831 12453 19379;19380 25293;25294;25295;25296 25295 4 LPQLVDMAAQIASGMAYVER Unmodified 2162.0864 0.086395526 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 9 0 1 100.43 100.43 3 4.1303E-19 31238 TMT1-8 115.72 94.187 30.406 99.022 64.131 50.933 65.647 61.021 29 96 67 50 67 59 3 4 4 3 4 4 18672 12583 673 12454 19381 25297;25298;25299;25300 25299 4 LPRPSSLSDK Unmodified 1098.6033 0.60332266 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 6.25 3.11 1 1 1 1 41.774 41.774 3 0.0032308 10141 TMT1-7 85.288 48.135 8691.8 11567 11219 8115.6 9770.9 11830 8217 11598 11385 8205 10086 11359 6 6 6 6 6 6 590320 12584 2112 12455 19382;19383;19384;19385 25301;25302;25303;25304;25305;25306 25304 6 LPSFELLHK Unmodified 1082.6124 0.61243078 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 61.361 61.361 3 0.0021659 16232 TMT1-8 86.624 55.551 183.93 268.78 237.59 258.69 253.65 217.69 174 268 246 254 261 211 2 2 2 2 2 2 33608 12585 1888 12456 19386;19387 25307;25308 25308 2 LPSGLGCSTVLSPEGSAQFAAQIFGLSNHLVWSK Unmodified 3557.7977 0.79768873 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 0 9 0 1 92.802 92.802 4 5.2844E-11 28437 TMT1-8 63.403 44.156 15.89 14.518 22.193 14.805 14.218 23.046 15 15 22 15 15 22 1 1 1 1 1 1 3919.3 12586 843 12457 19388 25309 25309 1 LPSGVFSLEFQDFVNK Unmodified 1825.9251 0.92505073 1569 Q02750;Q02750-2 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 0 0 0 8 0 1 85.12 85.12 3 1.654E-08 27221 TMT1-7 105.14 78.511 46.079 103.71 102.5 55.818 78.007 90.516 44 102 103 58 80 87 2 2 2 2 2 2 16045 12587 1569 12458 19389 25310;25311 25310 2 LPSHSDFLAELR Unmodified 1383.7147 0.71466402 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6 0 1 56.964 56.964 3 9.2878E-06 16920 TMT1-5 110.58 74.297 61.395 94.862 60.652 82.534 68.644 114.24 58 94 65 80 73 109 1 1 1 1 1 1 14887 12588 647 12459 19390 25312 25312 1 LPSIVVEPTEGEVESGELR Unmodified 2039.0423 0.04226533 1950 Q53QV2 LBH Protein LBH yes yes 0 0 0 0 0 3 0 1 67.46 67.46 3 9.1166E-06 22117 TMT1-2 63.998 46.779 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12589 1950 12460 19391 25313 25313 1 LPSSPVYEDAASFK Unmodified 1509.7351 0.73512469 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 62.433 62.433 3 5.2702E-05 19108 TMT1-5 89.507 70.263 224.45 354.85 207.93 172.65 273.35 216.06 212 351 220 174 276 210 2 2 2 2 2 2 44566 12590 1766 12461 19392 25314;25315 25315 2 LPSVPQIAK Unmodified 951.57532 0.57531699 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 9 0 1 57.925 57.925 2 0.020711 14897 TMT1-8 73.233 43.067 161.43 156.89 147.73 146.18 186.11 141.8 152 160 152 145 189 138 1 1 1 1 1 1 12787 12591 2004 12462 19393 25316 25316 1 LPSVPSTHLPAGPAPK Unmodified 1567.8722 0.8722273 2572 Q9BY43;Q9BY43-2 CHMP4A Charged multivesicular body protein 4a yes no 0 0 0 0 0 8.33 0.471 2 1 51.412 51.412 3;4 8.6131E-07 14234 TMT1-7 80.706 70.048 184.64 200.6 176.07 152.79 151.76 219.53 174 203 181 152 159 210 2 2 2 2 2 2 11664 12592 2572 12463 19394;19395;19396 25317;25318;25319 25318 3 LPTGINPLTLHIMR Unmodified 1574.8967 0.89666791 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 9 0 1 65.922 65.922 3 0.0040375 18052 TMT1-8 55.176 29.834 15.655 36.53 42.99 52.686 26.329 46.153 15 36 44 51 29 44 1 1 1 1 1 1 8288.6 12593 1960 12464 19397 25320 25320 1 LPTGQISGPEIK Unmodified 1238.6871 0.68705229 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6.5 0.5 1 1 55.738 55.738 3 1.6338E-05 15804 TMT1-6 105.65 71.782 169.27 275.12 171.75 151.2 249.76 322.27 160 272 181 152 256 309 1 1 1 1 1 1 21779 12594 1632 12465 19398;19399 25321;25322 25322 2 LPVALDPGAK Unmodified 979.57023 0.57023162 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 7 0 1 59.593 59.593 2 0.00034395 17374 TMT1-6 122.13 92.562 268.92 330.68 329.02 250.77 385.1 359.98 254 333 334 254 391 348 2 2 2 2 2 2 45256 12595 478 12466 19400 25323;25324 25324 2 LPVDILGR Unmodified 881.53345 0.53345218 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 7 0 1 64.793 64.793 2 0.029363 19411 TMT1-6 82.241 21.269 68.367 131.7 119.94 134.24 95.31 151.85 65 130 124 131 102 145 2 2 2 2 2 2 19282 12596 1098 12467 19401 25325;25326 25326 2 LPVGFTFSFPCQQSK Unmodified 1741.8498 0.84977729 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 9 0 1 76.238 76.238 3 6.7552E-08 22103 TMT1-8 105.99 75.425 99.825 76.561 109.32 79.059 99.167 113.36 94 80 109 80 102 109 1 1 1 1 1 1 14381 12597 787 12468 19402 25327 25327 1 LPVGPSHK Unmodified 833.47594 0.4759373 340 O95182 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 0 0 0 0 0 8 0 1 37.229 37.229 3 0.0015142 8541 TMT1-7 69.825 48.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12598 340 12469 19403 25328 25328 1 LPVIDPESGNTLYILTHK Unmodified 2009.0833 0.083342284 1299 P54619-2;P54619;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 0 7 0 1 74.069 74.069 3 1.4432E-05 23015 TMT1-6 63.691 47.385 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12599 1299 12470 19404 25329 25329 1 LPVMTMIPDVDCLLWAIGR Unmodified 2199.1254 0.12542357 389 P00390-2;P00390-3;P00390 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 105.38 105.38 3 5.8215E-21 32931 TMT1-8 124.43 109.18 7.4255 10.9 18.163 13.949 14.404 18.777 7 11 18 14 15 18 1 2 2 2 2 2 6418.5 12600 389 12471 19405 25330;25331 25330 2 LPVPASAPIPFFHR Unmodified 1547.8613 0.86126868 2278 Q8WWI5-3;Q8WWI5-2;Q8WWI5 SLC44A1 Choline transporter-like protein 1 yes no 0 0 0 0 0 9 0 1 67.879 67.879 3 0.0043541 18837 TMT1-8 55.604 36.625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12601 2278 12472 19406 25332 25332 1 LPVPPLQQSLDHYLK Unmodified 1746.9669 0.96685596 1108 P43155-3;P43155-2;P43155 CRAT Carnitine O-acetyltransferase yes no 0 0 0 0 0 8 0 1 68.922 68.922 3 5.2881E-05 21042 TMT1-7 86.497 52.812 68.797 86.49 86.098 56.111 114.37 127.85 65 87 87 58 116 123 1 1 1 1 1 1 11954 12602 1108 12473 19407 25333 25333 1 LPVQLQR Unmodified 852.51814 0.51813647 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 8.5 0.5 1 1 48.186 48.186 2 0.0042257 12845 TMT1-7 137.44 0 2658 3472.6 2982.4 2347.9 2804.6 3705.3 2510 3479 3058 2359 2906 3551 2 2 2 2 2 2 540330 12603 906 12474 19408;19409 25334;25335 25334 2 LPVTNEMVHNLVAIELAYINTK Unmodified 2481.3301 0.33013127 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 8 0 1 90.6 90.6 4 9.3495E-13 29321 TMT1-7 96.131 81.822 92.426 93.575 76.108 98.139 61.66 83.521 87 95 80 95 66 80 2 2 2 2 2 2 9421.9 12604 68 12475 19410 25336;25337 25337 2 LPVVIGGLLDVDCSEDVIK Unmodified 2040.0813 0.081293373 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 6 0 2 88.327 88.327 3;4 1.8391E-23 29198 TMT1-5 135.45 119.31 139.26 226.53 208.04 134.08 231.65 172.05 132 225 211 138 233 167 4 4 4 4 4 3 60048 12605 1540 12476 19411;19412 25338;25339;25340;25341 25339 4 LPWAVAGR Unmodified 868.49192 0.49192172 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 9 0 1 57.035 57.035 2 0.018407 14577 TMT1-8 79.939 22.487 183.95 292.58 214.06 244.82 252.2 278.49 174 290 225 240 261 268 2 2 2 2 2 2 19625 12606 2206 12477 19413 25342;25343 25343 2 LPYDVTPEQALAHEEVK Unmodified 1937.9735 0.97345748 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 59.883 59.883 4 1.014E-05 18166 TMT1-3 83.418 64.359 107.53 225.72 130.08 115.69 178.07 172.94 102 221 138 116 181 167 1 1 1 1 1 1 22922 12607 1139 12478 19414 25344 25344 1 LPYDVTTEQALTYPEVK Unmodified 1965.9935 0.99352422 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 5.5 0.5 1 1 69.228 69.228 3 5.9962E-14 21575 TMT1-4 123.36 97.238 153.73 164.44 172.24 121.02 167.57 258.52 145 167 174 123 174 247 2 2 2 2 2 2 46476 12608 1723 12479 19415;19416 25345;25346 25345 2 LPYFFHAGETDWQGTSIDR Unmodified 2239.0334 0.033431979 2798 Q9NZK5;Q9NZK5-2 CECR1 Adenosine deaminase CECR1 yes no 0 0 0 0 0 7 0 1 67.553 67.553 3 2.8531E-06 20470 TMT1-6 78.925 68.784 30.593 43.903 50.824 35.237 57.495 45.263 29 44 51 36 58 44 1 1 1 1 1 1 14931 12609 2798 12480 19417 25347 25347 1 LPYNTSDDPWLTAYNFLQK Unmodified 2285.1004 0.10044891 2954 Q9Y263 PLAA Phospholipase A-2-activating protein yes yes 0 0 0 0 0 8 0 2 87.035 87.035 3;4 5.7394E-05 27926 TMT1-7 66.893 51.301 62.509 73.317 72.005 26.592 43.234 45.67 59 74 72 29 44 44 2 2 2 2 2 2 10015 12610 2954 12481 19418;19419 25348;25349 25348 2 LPYPFSNK Unmodified 964.50182 0.5018177 2951 Q9Y251-2;Q9Y251;Q9Y251-3 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 9 0 1 61.344 61.344 2 0.0067159 16201 TMT1-8 120.46 36.359 299.96 318.64 350.87 283.02 286.52 324.42 283 324 355 283 297 312 2 2 2 2 2 2 27436 12611 2951 12482 19420 25350;25351 25350 2 LQAAGNAVK Unmodified 870.49232 0.49231565 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 5.8 2.48 1 1 2 1 40.138 40.138 2;3 7.1668E-06 9749 TMT1-6 160.75 92.325 1337 1697.7 1445.5 1352 1580.2 1824.7 1262 1703 1492 1343 1630 1754 6 6 6 6 6 6 1091200 12612 3010;3014 12483 19421;19422;19423;19424;19425 25352;25353;25354;25355;25356;25357 25355 6 LQAEAQQLR Unmodified 1055.5724 0.57235688 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 4.5 0.5 1 1 40.298 40.298 2 8.3889E-20 10425 TMT1-3 192.6 158.43 385.29 428.98 344.32 344.7 398.17 463.01 363 433 358 341 411 445 2 2 2 2 2 2 82216 12613 1891 12484 19426;19427 25358;25359 25358 2 LQAEEVAQQK Unmodified 1142.5932 0.5931519 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 2 42.905 42.905 2;3 0.00016796 11457 TMT1-3 104.43 68.782 369.96 391.2 247.09 223.99 383.31 417.59 348 395 261 225 390 402 2 2 2 2 2 2 45927 12614 1833 12485 19428;19429 25360;25361 25360 2 LQAETELINR Unmodified 1185.6354 0.63535107 2899 Q9UKW4-2;Q9UKW4;Q9UKW4-4;Q9UKW4-3 VAV3 Guanine nucleotide exchange factor VAV3 yes no 0 0 0 0 0 4 0 1 49.918 49.918 2 0.00037831 14246 TMT1-3 87.789 42.128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12615 2899 12486 19430 25362 25362 1 LQAEVLECVSLVELTSLK Unmodified 2030.0969 0.096943438 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 0 0 0 7 0 2 90.735 90.735 3;4 2.5887E-10 29414 TMT1-6 109.54 84.346 154.52 226.18 167.77 137.92 213.12 249.76 146 225 174 139 218 240 6 6 6 6 6 6 15530 12616 541 12487 19431;19432 25363;25364;25365;25366;25367;25368 25364 6 LQAFSAAIESCNK Unmodified 1437.6922 0.69221402 1570 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 0 8 0 1 61.922 61.922 3 0.0010868 18303 TMT1-7 56.29 32.685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12617 1570 12488 19433 25369 25369 1 LQAILEDIQVTLFTR Unmodified 1758.988 0.98798534 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 9 0 1 102.4 102.4 3 1.1075E-07 31940 TMT1-8 103.39 84.792 31.728 51.556 34.011 37.886 28.056 46.103 30 51 36 37 30 44 2 2 2 2 2 2 4662.2 12618 543 12489 19434 25370;25371 25370 2 LQALANEQAAAAHELEK Unmodified 1805.9272 0.92717599 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 5 0 1 57.61 57.61 3 1.6267E-24 16976 TMT1-4 120.9 101.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12619 2109 12490 19435 25372 25372 1 LQALDTGWNELHK Unmodified 1523.7732 0.77324153 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 60.974 60.974 3 0.00017473 18382 TMT1-5 89.136 74.45 169.14 157.11 294.18 184.88 221.21 255.92 160 163 289 189 228 246 1 1 1 1 1 1 41833 12620 1546 12491 19436 25373 25373 1 LQALQEVCSR Unmodified 1202.6078 0.60775611 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 6 0 1 50.478 50.478 2 0.0041438 14338 TMT1-5 64.906 35.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12621 3003 12492 19437 25374 25374 1 LQALQSQVEFLEQSMVDK Unmodified 2092.0511 0.051055878 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 7 0 1 88.26 88.26 3 0.00011397 28395 TMT1-6 73.11 56.425 15.775 29.309 28.91 14.143 28.101 46.102 15 29 29 15 29 44 1 1 1 1 1 1 4605.8 12622 2306 12493 19438 25375 25375 1 LQALVNSLCAGQSP Unmodified 1456.7344 0.73441319 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 9 0 1 78.719 78.719 3 0.00068841 23021 TMT1-8 63.76 33.429 23.171 44.665 35.195 21.549 21.238 22.846 22 44 36 22 22 22 1 1 1 1 1 1 12881 12623 2053 12494 19439 25376 25376 1 LQAQLDLIEKDYADR Unmodified 1789.921 0.92102798 2646 Q9H479 FN3K Fructosamine-3-kinase yes yes 0 0 0 0 1 5 0 1 64.075 64.075 3 4.8391E-15 19514 TMT1-4 138.19 110.02 107.67 136.52 182.39 105.93 123.97 238.44 102 138 181 109 131 227 1 1 1 1 1 1 24127 12624 2646 12495 19440 25377 25377 1 LQASNVTNK Unmodified 973.51926 0.51925868 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 7 0 1 39.446 39.446 2 0.00061412 9359 TMT1-6 132.88 62.35 61.296 103.22 70.24 50.375 62.809 83.488 58 102 73 51 65 80 1 1 1 1 1 1 9189.7 12625 2896 12496 19441 25378 25378 1 LQATLDMQSGIIHAAEEK Unmodified 1953.983 0.98297631 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 9 0 1 81.364 81.364 3 0.040923 24114 TMT1-8 32.55 11.899 69.005 71.96 63.378 51.336 33.464 53.411 65 73 65 51 36 51 1 1 1 1 1 1 7334.6 12626 54 12497 19442 25379 25379 1 LQATVQELQK Unmodified 1156.6452 0.64518747 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 6 0 1 53.925 53.925 3 2.9689E-05 15647 TMT1-5 133.81 48.453 633.17 933.02 634.64 552.96 725.24 924.85 598 927 664 553 748 887 2 2 2 2 2 2 147150 12627 971 12498 19443 25380;25381 25380 2 LQAVEVVITHLAPGTK Unmodified 1674.9669 0.96685596 2975 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 0 0 0 0 0 9 0 1 73.848 73.848 3 3.7923E-08 21177 TMT1-8 102.58 79.699 84.832 108.97 77.066 56.759 108.58 82.182 80 109 80 58 109 80 1 1 1 1 1 1 14812 12628 2975 12499 19444 25382 25382 1 LQAVTDDHIR Unmodified 1166.6044 0.60438529 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 4 0 1 39.171 39.171 3 8.7869E-06 9946 TMT1-3 147.3 119.56 184.32 230.99 205.33 159.35 175.24 227.39 174 232 210 160 182 218 2 2 2 2 2 2 138750 12629 946 12500 19445 25383;25384 25383 2 LQAYHTQTTPLIEYYR Unmodified 1996.0054 0.005426314 1303 P54819-2;P54819;P54819-5;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 6.33 0.471 2 1 53.597 53.597 3;4 4.6757E-24 15505 TMT1-5 177.04 146.07 253.97 443.09 220.9 245.1 215.81 241.15 240 436 240 240 225 232 4 4 4 4 4 4 64856 12630 1303 12501 19446;19447;19448 25385;25386;25387;25388 25385 4 LQCPTCIK Unmodified 1018.494 0.49397191 1284 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 0 7 0 1 45.91 45.91 3 0.025236 11822 TMT1-6 58.981 37.608 68.305 132.61 129.63 85.5 99.127 105.9 65 131 131 87 102 102 1 1 1 1 1 1 37625 12631 1284 12502 19449 25389 25389 1 LQDAEIAR Unmodified 914.48214 0.48214489 510 P06703 S100A6 Protein S100-A6 yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 40.627 40.627 2 0.0003805 11309 TMT1-1 151.97 23.408 3200.7 5530 3611.9 3260.2 3905.8 4563 3029 5457 3794 3247 4027 4385 7 7 7 7 7 7 880280 12632 510 12503 19450;19451;19452;19453 25390;25391;25392;25393;25394;25395;25396 25392 7 LQDAFSSIGQSCHLDLPQIAVVGGQSAGK Unmodified 2982.4869 0.48691928 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 8 0 1 74.106 74.106 4 4.6791E-24 23097 TMT1-7 108.32 89.598 37.915 65.528 64.308 42.628 86.749 66.815 36 65 65 44 87 65 1 1 1 1 1 1 9147.2 12633 1226 12504 19454 25397 25397 1 LQDAINILK Unmodified 1026.6073 0.6073454 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 68.284 68.284 2 0.0019252 20779 TMT1-7 110.14 46.976 91.758 138.13 150.6 114.71 164.78 134.94 87 138 152 116 167 131 1 1 1 1 1 1 13386 12634 1101 12505 19455 25398 25398 1 LQDEFENR Unmodified 1049.4778 0.47778779 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 2 0 1 44.773 44.773 2 0.030859 12854 TMT1-1 81.163 40.139 115.58 129.57 120.9 85.908 105.12 144.11 109 131 123 87 109 138 1 1 1 1 1 1 13464 12635 1501 12506 19456 25399 25399 1 LQDEIQNMK Unmodified 1117.5438 0.54375887 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 4.5 0.5 1 1 53.899 53.899 3 0.0020003 15482 TMT1-4 88.496 63.154 221.85 358.06 281.2 224.11 268.81 431.52 210 355 290 225 281 412 2 2 2 2 2 2 34826 12636 575 12507 19457;19458 25400;25401 25401 2 LQDEIQNMKEEMAR Unmodified 1733.8077 0.80765448 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 5.5 0.5 1 1 63.413 63.413 3 1.4017E-07 19353 TMT1-4 113.52 86.491 406.47 707.54 334.97 298.49 443.9 685.56 384 696 363 299 460 655 3 3 3 3 3 3 108790 12637 575 12508 19459;19460 25402;25403;25404 25403 3 LQDFNVGDYIEAVLDR Unmodified 1865.9159 0.9159426 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 5.67 0.471 1 2 93.739 93.739 2;3 7.2325E-29 31111 TMT1-4 185.02 177.79 50.928 46.681 72.864 68.787 63.486 69.61 48 48 73 68 66 67 3 3 4 4 4 4 42804 12638 648 12509 19461;19462;19463 25405;25406;25407;25408 25406 4 LQDGSIK Unmodified 759.41267 0.41266834 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 5 0 1 41.811 41.811 2 0.00043383 10766 TMT1-4 117.04 25.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12639 840 12510 19464 25409 25409 1 LQDIESK Unmodified 831.4338 0.43379771 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 4.5 0.5 1 1 46.942 46.942 2;3 0.0095752 12793 TMT1-4 111.74 19.839 2126.5 3077.6 2655.1 1860 2645.5 3171.5 2011 3069 2711 1892 2715 3046 2 2 2 2 2 2 211470 12640 1684 12511 19465;19466 25410;25411 25411 2 LQDLQGEK Unmodified 929.48181 0.48181054 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 5 0 1 46.184 46.184 2 0.011172 12511 TMT1-4 98.249 25.702 138.52 180.06 190.22 159.37 221.6 217.54 131 181 193 160 226 210 1 1 1 1 1 1 12608 12641 228 12512 19467 25412 25412 1 LQDLQGEKDALHSEK Unmodified 1709.8584 0.85842773 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 5 0 1 47.871 47.871 4 3.7229E-08 13203 TMT1-4 114.29 90.45 600.68 893.38 718.79 712.83 733.78 1071.7 568 889 746 704 768 1025 2 2 2 2 2 2 101440 12642 228 12513 19468 25413;25414 25414 2 LQDLTLR Unmodified 857.49707 0.49706667 3017 Q9Y4L1;Q9BXT5 HYOU1;TEX15 Hypoxia up-regulated protein 1;Testis-expressed sequence 15 protein yes no 0 0 0 0 0 6 0 1 53.126 53.126 2 0.037813 15335 TMT1-5 87.181 60.044 169.33 210.52 217.12 118.29 170.37 180.62 160 212 218 123 174 174 1 1 1 1 1 1 39022 12643 3017 12514 19469 25415 25415 1 LQDPFSLYR Unmodified 1137.5819 0.58185894 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 0 8 0 1 64.869 64.869 2 0.012338 19451 TMT1-7 85.716 31.838 108.24 153.22 72.506 96.866 82.643 113.84 102 152 80 94 87 109 1 1 1 1 1 1 15702 12644 834 12515 19470 25416 25416 1 LQDPVLVSCDSAPCTVVQCDLQEMAR Unmodified 2990.3606 0.36059783 565 P08514;P08514-2 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 4.5 0.5 1 1 75.992 75.992 4 4.8792E-22 24533 TMT1-3 106.04 99.947 77.173 101.51 108.29 71.059 121.01 127.66 73 102 109 73 123 123 3 3 3 3 3 3 95440 12645 565 12516 19471;19472 25417;25418;25419 25418 3 LQDQIFNLMK Unmodified 1248.6536 0.65364367 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 0 8 0 1 73.848 73.848 3 0.00014602 22951 TMT1-7 107.83 72.32 100.86 115.23 83.492 72.292 75.894 130.02 95 116 87 72 80 124 2 2 2 2 2 2 17329 12646 188 12517 19473 25420;25421 25420 2 LQDQQVVINYSIVK Unmodified 1645.9039 0.90392136 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 0 7 0 1 64.437 64.437 3 2.3634E-07 19189 TMT1-6 106.52 85.274 54.071 73.231 47.553 66.497 91.112 121.06 51 73 51 65 94 116 1 1 1 1 1 1 30356 12647 2872 12518 19474 25422 25422 1 LQDVFNTVGADIIQLPQIVVVGTQSSGK Unmodified 2925.5811 0.58113724 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 8.67 0.471 1 2 99.91 99.91 3;4 1.4238E-34 31009 TMT1-8 121.02 113.13 200.63 227.2 266.86 191.03 213.19 207.12 190 230 268 193 219 200 7 6 6 6 6 6 59315 12648 68 12519 19475;19476;19477 25423;25424;25425;25426;25427;25428;25429 25427 7 LQDYEEK Unmodified 923.42363 0.42362696 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 3.5 0.5 1 1 44.369 44.369 2 0.014822 13067 TMT1-2 101.64 40.682 352.67 663.29 398.07 307.91 498.93 471.86 334 652 419 312 506 456 2 2 2 2 2 2 57479 12649 720 12520 19478;19479 25430;25431 25430 2 LQEACKDILLFK Unmodified 1476.801 0.80103619 695;974 P13861-2;P13861;P31323 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit no no 0 0 0 0 1 8 0 1 65.359 65.359 3 0.00016982 19632 TMT1-7 99.011 70.246 161.53 172.28 117.76 93.807 101.9 227.35 152 174 123 94 109 216 1 1 1 1 1 1 12202 12650 695;974 12521 19480 25432 25432 1 LQEAESNLR Unmodified 1058.5356 0.53563702 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 2 0 1 41.12 41.12 2 0.021234 11400 TMT1-1 77.533 24.017 85.193 71.116 48.525 44.018 62.845 90.949 80 73 51 44 65 87 1 1 1 1 1 1 8335.7 12651 2309 12522 19481 25433 25433 1 LQEAFDQACSSPQWVPVSWVY Unmodified 2496.142 0.14199615 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 7 0 1 95.501 95.501 3 0.0028996 31146 TMT1-6 48.656 34.64 47.025 11.359 21.883 22.506 12.561 30.556 44 14 22 22 14 29 2 2 2 2 2 2 10998 12652 1534 12523 19482 25434;25435 25435 2 LQEALDAEMLEDEAGGGGAGPGGACK Unmodified 2502.1003 0.10026727 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 3 0 1 68.987 68.987 3 7.5511E-09 22694 TMT1-2 78.451 72.192 7.1742 22.294 37.714 21.241 29.628 22.607 7 22 37 22 30 22 1 1 1 1 1 1 4039.7 12653 1915 12524 19483 25436 25436 1 LQEALEDER Unmodified 1101.5302 0.53021729 2858 Q9UH65 SWAP70 Switch-associated protein 70 yes yes 0 0 0 0 0 2 0 1 47.162 47.162 2 0.005339 13792 TMT1-1 97.456 44.129 30.436 58.577 64.777 42.314 101.92 82.372 29 58 65 44 102 80 1 1 1 1 1 1 7993.8 12654 2858 12525 19484 25437 25437 1 LQEALER Unmodified 857.46068 0.46068117 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 3 0 1 42.916 42.916 2 0.010713 12399 TMT1-2 106.91 20.816 475.59 635.2 500.98 426.14 395.3 742.38 449 635 518 424 421 707 2 2 2 2 2 2 145140 12655 1597 12526 19485 25438;25439 25438 2 LQEALNLFK Unmodified 1074.6073 0.6073454 1469 P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 0 9 0 1 73.628 73.628 2 0.0020359 21078 TMT1-8 109.66 50.419 92.506 85.164 69.763 81.873 74.94 144.97 87 87 73 80 80 138 1 1 1 1 1 1 9768.1 12656 1469 12527 19486 25440 25440 1 LQEALQLEVK Unmodified 1169.6656 0.66558856 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 0 6 0 1 63.467 63.467 2 0.00033633 19481 TMT1-5 122.51 82.509 46.509 73.603 55.812 51.487 49.418 45.494 44 73 58 51 51 44 1 1 1 1 1 1 6247.6 12657 2651 12528 19487 25441 25441 1 LQEAQEELAGLQR Unmodified 1483.7631 0.76307078 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 4 0 1 59.19 59.19 3 0.0001015 17877 TMT1-3 91.939 62.825 37.858 89.115 53.853 75.542 55.129 60.255 36 87 58 73 58 58 1 1 1 1 1 1 8380 12658 2851 12529 19488 25442 25442 1 LQEDYDMESVLR Unmodified 1496.6817 0.68170891 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 3 0 1 62.369 62.369 3 0.00013452 20097 TMT1-2 96.23 65.792 37.924 74.187 55.471 59.333 40.153 91.596 36 73 58 58 44 87 1 1 1 1 1 1 6765.8 12659 1222 12530 19489 25443 25443 1 LQEEEAELQQVLQLSLTDK Unmodified 2213.1427 0.14270766 2155 Q8IZ07 ANKRD13A Ankyrin repeat domain-containing protein 13A yes yes 0 0 0 0 0 5 0 1 90.695 90.695 4 0.00049955 29863 TMT1-4 56.327 35.888 0 15.595 21.859 22.65 4.9685 38.234 0 15 22 22 7 36 0 1 1 1 1 1 1828.1 12660 2155 12531 19490 25444 25444 1 LQEEITK Unmodified 859.4651 0.46509784 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 0 4 0 1 45.603 45.603 2 0.010582 12532 TMT1-3 107.47 68.317 473.85 639.71 428.7 415.64 601.15 427.37 447 638 451 414 607 417 1 1 1 1 1 1 46785 12661 1298 12532 19491 25445 25445 1 LQEELSAATDR Unmodified 1231.6044 0.60444487 2456 Q96T51;Q96T51-2 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 2 0 1 50.376 50.376 2 0.0049078 15017 TMT1-1 87.216 43.482 77.219 93.008 107.77 94.329 105.79 113.18 73 94 109 94 109 109 1 1 1 1 1 1 14619 12662 2456 12533 19492 25446 25446 1 LQEEMLQR Unmodified 1045.5226 0.5226295 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 3.5 0.5 1 1 45.795 45.795 2 0.0054545 12502 TMT1-3 117.81 64.874 432.41 577.87 412.73 497.79 468.42 558.01 408 577 436 486 488 536 3 3 3 3 3 3 170050 12663 575 12534 19493;19494 25447;25448;25449 25448 3 LQEEMLQREEAENTLQSFR Unmodified 2350.1223 0.12232334 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 3.67 0.471 1 2 58.784 58.784 3;4 1.1398E-31 17658 TMT1-3 154.31 147.52 208.72 310.57 183.51 199.27 213.81 360.6 197 308 196 196 225 344 3 3 3 3 3 3 159000 12664 575 12535 19495;19496;19497 25450;25451;25452 25451 3 LQEESDLELAK Unmodified 1273.6402 0.64016167 303 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 0 3 0.816 1 1 1 55.834 55.834 3 0.00031386 17290 TMT1-1 97.214 66.664 138.36 219.55 183.85 152.15 161.22 188.35 131 218 189 152 167 181 3 3 3 3 3 3 20870 12665 303 12536 19498;19499;19500 25453;25454;25455 25453 3 LQEETGAK Unmodified 874.43961 0.43961137 1610;1991 Q5VWX1;Q07666;Q07666-2 KHDRBS2;KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 1 no no 0 0 0 0 0 4 0 2 36.326 36.326 3 0.00045527 8850 TMT1-3 81.95 3.8377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12666 1991;1610 12537 19501;19502 25456;25457 25456 2 LQEGYDHSYYFIATFITDHIR Unmodified 2588.2336 0.23358835 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 7.5 0.5 1 1 79.65 79.65 4 5.5276E-11 25258 TMT1-7 101.94 94.545 123.35 98.467 104.28 135.83 118.53 143.73 116 102 108 132 124 138 3 3 3 3 3 3 41547 12667 637 12538 19503;19504 25458;25459;25460 25460 3 LQEIENAINEYR Unmodified 1490.7365 0.73652168 2967 Q9Y2L6-2;Q9Y2L6 FRMD4B FERM domain-containing protein 4B yes no 0 0 0 0 0 5 0 1 71.059 71.059 3 0.0027499 22236 TMT1-4 70.622 57.485 23.195 0 69.021 26.765 43.519 37.134 22 0 65 29 44 36 1 0 1 1 1 1 4461 12668 2967 12539 19505 25461 25461 1 LQEIFTEK Unmodified 1006.5335 0.53351176 2833 Q9P2W9 STX18 Syntaxin-18 yes yes 0 0 0 0 0 6 0 1 61.936 61.936 2 0.039052 18859 TMT1-5 77.662 43.41 46.464 73.479 63.42 50.9 56.518 52.753 44 73 65 51 58 51 1 1 1 1 1 1 5716.6 12669 2833 12540 19506 25462 25462 1 LQEKEDLQELNDR Unmodified 1628.8006 0.8005785 429 P02545-2;P02545-6;P02545-3;P02545 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 1 3 0.816 1 1 1 47.472 47.472 3 1.9839E-11 13080 TMT1-3 115.79 99.654 284.48 324.69 242.4 258.49 248.89 356.4 268 327 254 254 261 341 2 2 2 2 2 2 26409 12670 429 12541 19507;19508;19509 25463;25464;25465 25465 3 LQEKEELR Unmodified 1043.5611 0.56112349 816;1577 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 0 1 4 0 1 37.066 37.066 3 0.002231 9114 TMT1-3 105.4 46.151 428.69 911.62 575.66 568.71 714.33 734.34 407 893 608 564 732 708 1 1 1 1 1 1 130500 12671 816;1577 12542 19510 25466 25466 1 LQELDAASK Unmodified 973.50803 0.50802529 597 P09497-2;P09497 CLTB Clathrin light chain B yes no 0 0 0 0 0 4.5 0.5 1 1 49.536 49.536 2 0.0018059 13810 TMT1-4 112.75 49.183 326.01 467.9 355.17 346.92 362.36 467.23 308 466 370 343 377 448 2 2 2 2 2 2 37653 12672 597 12543 19511;19512 25467;25468 25468 2 LQELSAEER Unmodified 1073.5353 0.53530267 2745 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 2.5 0.5 1 1 44.08 44.08 2 0.00047187 12617 TMT1-1 136.84 99.118 214.89 291.02 246.21 226.25 266.1 325 203 291 254 225 275 312 3 3 3 3 3 3 47427 12673 2745 12544 19513;19514 25469;25470;25471 25469 3 LQEMEGTVK Unmodified 1033.5114 0.51139611 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.75 1.64 1 1 2 49.351 49.351 2;3 3.6921E-06 13678 TMT1-4 163.94 57.898 2865.1 3891.6 2983.4 2466.1 3025.8 4567.8 2705 3886 3088 2471 3151 4366 4 4 4 4 4 4 610970 12674 1019 12545 19515;19516;19517;19518 25472;25473;25474;25475 25474 4 LQEQEQLLK Unmodified 1127.6186 0.61863837 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes yes 0 0 0 0 0 5 0 1 51.694 51.694 3 0.0017727 14653 TMT1-4 90.108 31.153 107.55 213.89 137.66 131.33 194.12 141.57 102 210 145 131 196 138 1 1 1 1 1 1 12096 12675 993 12546 19519 25476 25476 1 LQETTLVANQLR Unmodified 1384.7674 0.76742787 87 O00754-2;O00754 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 0 0 0 0 0 6 0 1 54.244 54.244 2 4.4677E-05 15823 TMT1-5 89.805 59.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12676 87 12547 19520 25477 25477 1 LQEVAFYQLQQDCDLSCQITIPK Unmodified 2796.3463 0.34625162 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 7 0 1 79.992 79.992 4 0.012752 25329 TMT1-6 37.896 21.364 38.189 34.992 44.07 27.977 58.122 36.717 36 36 44 29 58 36 1 1 1 1 1 1 6620.8 12677 161 12548 19521 25478 25478 1 LQEVEVPEDFGPVR Unmodified 1612.8097 0.80968662 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 3.5 0.5 1 1 63.894 63.894 3 0.00011369 19669 TMT1-3 84.759 72.594 84.542 131.9 106.45 94.959 76.464 83.098 80 131 110 94 80 80 2 2 2 2 2 2 24720 12678 374 12549 19522;19523 25479;25480 25480 2 LQEVFGHAIK Unmodified 1140.6291 0.62914348 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 55.074 55.074 3 0.0012516 15621 TMT1-7 89.403 55.025 260.76 425.46 356.57 307.24 375.57 379.44 247 422 367 307 385 366 1 1 1 1 1 1 37607 12679 1296 12550 19524 25481 25481 1 LQEVIETLLSLEK Unmodified 1513.8603 0.86032521 55 O00232 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 0 0 0 0 0 8.5 0.5 1 1 102.17 102.17 3 1.6164E-09 31834 TMT1-8 114.74 82.245 185.86 186.43 163.25 143.7 152.41 182.2 175 189 168 143 158 175 6 5 6 6 6 6 20841 12680 55 12551 19525;19526 25482;25483;25484;25485;25486;25487 25486 6 LQEVLDYLTNSASLQMK Unmodified 1951.9925 0.99247837 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 9 0 1 92.521 92.521 3 1.6918E-08 28325 TMT1-8 87.85 62.921 30.767 35.754 28.453 14.033 35.435 45.893 29 36 29 15 36 44 1 1 1 1 1 1 4701.8 12681 2241 12552 19527 25488 25488 1 LQEVPHEGPMCDLLWSDPDDR Unmodified 2508.105 0.10495872 1482 P67775;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 4 0 1 67.162 67.162 3 4.577E-18 20991 TMT1-3 120.32 99.891 23.193 28.537 45.186 13.3 21.36 30.304 22 29 44 15 22 29 1 1 1 1 1 1 13941 12682 1482 12553 19528 25489 25489 1 LQEYNIPGVIQSVIGWK Unmodified 1943.0516 0.051648225 364 O95674 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 0 0 0 0 0 9 0 1 90.509 90.509 3 1.9743E-10 27590 TMT1-8 100.77 74.625 61.001 109.96 114.02 102.91 94.898 175.31 58 109 116 102 101 167 2 2 2 2 2 2 24154 12683 364 12554 19529 25490;25491 25490 2 LQFGGEAAQAEAWAWLAANQLSSVITTK Unmodified 2960.5032 0.50322127 1641 Q12769 NUP160 Nuclear pore complex protein Nup160 yes yes 0 0 0 0 0 9 0 1 104.87 104.87 4 0.025645 32733 TMT1-8 28.181 13.053 15.897 22.093 14.541 6.367 22.192 15.357 15 22 15 7 22 15 1 1 1 1 1 1 932.69 12684 1641 12555 19530 25492 25492 1 LQFHDVAGDIFHQQCK Unmodified 1941.9156 0.91556545 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 7 0 1 56.229 56.229 4 3.2579E-09 16039 TMT1-6 114.01 97.891 351.77 547.29 467.1 323.41 443.84 471.3 333 544 477 329 454 454 2 2 2 2 2 2 77844 12685 655 12556 19531 25493;25494 25494 2 LQFIADHCPTLR Unmodified 1469.7449 0.74491829 1670 Q13098-5;Q13098;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 0 8 0 1 53.586 53.586 3 0.00038689 14973 TMT1-7 87.498 71.608 115.4 199.2 93.616 94.617 135.34 135.78 109 196 102 94 138 131 1 1 1 1 1 1 16090 12686 1670 12557 19532 25495 25495 1 LQFPLPTAQR Unmodified 1169.6557 0.65569258 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 0 9 0 1 60.817 60.817 2 0.0067971 16014 TMT1-8 87.149 42.702 46.343 119.55 44.795 66.913 77.754 83.061 44 116 51 65 80 80 1 1 1 1 1 1 8022.5 12687 1242 12558 19533 25496 25496 1 LQFSEQVENIKPEIVSVTAACEELR Unmodified 2888.459 0.45897319 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 6 0 2 74.779 74.779 3;4 1.4553E-08 23929 TMT1-5 78.65 67.647 131.48 152.74 134.7 131.72 182.76 289 124 154 139 131 190 276 3 3 3 3 3 3 20443 12688 228 12559 19534;19535 25497;25498;25499 25499 3 LQGEHQGSLIIHPR Unmodified 1583.8532 0.85322319 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 6 0 1 36.122 36.122 4 9.8156E-07 8631 TMT1-5 103.85 87.716 139.33 151.01 79.039 119.7 126.6 143.5 131 152 87 116 131 138 1 1 1 1 1 1 8809.8 12689 1770 12560 19536 25500 25500 1 LQGELEK Unmodified 815.43888 0.43888309 1806 Q14BN4;Q14BN4-2;Q14BN4-3;Q14BN4-4;Q14BN4-5;Q14BN4-8 SLMAP Sarcolemmal membrane-associated protein yes no 0 0 0 0 0 4 0 1 45.147 45.147 2 0.029092 12376 TMT1-3 91.069 0 99.42 114.29 145.43 92.098 105.09 136.65 94 116 145 94 109 131 1 1 1 1 1 1 9887.2 12690 1806 12561 19537 25501 25501 1 LQGHLLR Unmodified 835.50282 0.50282075 70 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 0 0 8 0 1 35.451 35.451 3 0.0036396 7853 TMT1-7 64.757 32.822 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12691 70 12562 19538 25502 25502 1 LQGLVLK Unmodified 769.50617 0.5061748 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes no 0 0 0 0 0 9 0 1 59.669 59.669 2 0.0057167 15594 TMT1-8 97.068 24.244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12692 2251 12563 19539 25503 25503 1 LQGSVSVK Unmodified 816.47052 0.47051757 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 7 0 1 43.071 43.071 2 0.029766 10780 TMT1-6 81.95 27.983 77.275 101.8 90.958 95.475 98.156 120.86 73 102 94 94 102 116 1 1 1 1 1 1 5993.8 12693 2375 12564 19540 25504 25504 1 LQHAAELEQK Unmodified 1165.6091 0.60913632 1782 Q14571;Q14571-2 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes no 0 0 0 0 0 5 0 1 38.201 38.201 3 0.00075091 9330 TMT1-4 94.767 50.372 146.47 180.78 115.57 133.08 170.75 149.7 138 181 123 131 174 145 1 1 1 1 1 1 10922 12694 1782 12565 19541 25505 25505 1 LQHAAELIK Unmodified 1021.592 0.59202969 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 7 0 1 46.02 46.02 3 0.0060654 12004 TMT1-6 73.499 37.075 474.62 786.81 536.81 510.92 539.61 873.65 449 778 563 506 567 834 2 2 2 2 2 2 58191 12695 2267 12566 19542 25506;25507 25507 2 LQHGSILGFPK Unmodified 1195.6713 0.67134264 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 53.758 53.758 3 9.4139E-07 13286 TMT1-8 114.86 85.701 224.11 389.52 235.76 229.8 284.61 298.89 212 384 250 228 292 288 1 1 1 1 1 1 31446 12696 387 12567 19543 25508 25508 1 LQHIQAPLSWELVR Unmodified 1688.9362 0.93622454 2660 Q9H8H3 METTL7A Methyltransferase-like protein 7A yes yes 0 0 0 0 0 8 0 1 61.915 61.915 3 0.0080897 18275 TMT1-7 54.402 30.127 46.304 95.699 71.495 34.019 56.781 67.67 44 94 73 36 58 65 1 1 1 1 1 1 7156.7 12697 2660 12568 19544 25509 25509 1 LQHLENELTHDIITK Unmodified 1802.9527 0.95266246 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 5 0 1 62.227 62.227 4 0.00031935 18858 TMT1-4 75.574 60.543 168.42 177.6 216.98 166 191.21 180.03 159 181 218 167 196 174 2 2 2 2 2 2 20648 12698 407 12569 19545 25510;25511 25511 2 LQHPLGVTWDK Unmodified 1292.6877 0.68772099 2197 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 0 8 0 1 51.691 51.691 3 0.004116 14271 TMT1-7 71.176 50.168 334.92 373.23 381.65 267.67 249.34 422.48 316 378 386 270 264 403 1 1 1 1 1 1 29261 12699 2197 12570 19546 25512 25512 1 LQIEDFEAR Unmodified 1119.556 0.55603811 2810 Q9P0J0;Q9P0J0-2 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 0 0 0 0 0 4 0 1 57.741 57.741 2 0.00022571 17312 TMT1-3 144.77 77.738 77.16 116.59 97.698 118.57 127.46 120.02 73 116 102 116 131 116 1 1 1 1 1 1 24701 12700 2810 12571 19547 25513 25513 1 LQIELGK Unmodified 799.48035 0.48035398 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 7 0 2 56.58 56.58 2 0.018912 15964 TMT1-6 98.458 0 956.6 1867.7 1209 1034.7 1244.6 1817.2 907 1835 1268 1034 1295 1738 2 2 2 2 2 2 271330 12701 816 12572 19548;19549 25514;25515 25514 2 LQILNLGAK Unmodified 968.60187 0.6018661 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 65.425 65.425 2 0.0017289 17860 TMT1-8 117.04 11.089 130.38 127.92 159.99 107.65 103.61 159.08 123 131 160 109 109 152 1 1 1 1 1 1 10563 12702 51 12573 19550 25516 25516 1 LQILSLR Unmodified 841.53854 0.53853756 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 5 4 1 1 61.827 61.827 2 1.1218E-07 16313 TMT1-8 175.86 50.772 1517.7 2265.1 1969 1495.3 1719.8 2106.4 1436 2256 2014 1505 1779 2022 3 3 3 3 3 3 532520 12703 1851 12574 19551;19552 25517;25518;25519 25519 3 LQILTEVAADRPCPPFLR Unmodified 2095.1248 0.12482994 2707 Q9NQ75;Q9NQ75-2;Q9NQ75-3 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 1 9 0 1 72.404 72.404 4 1.6257E-07 20622 TMT1-8 82.259 69.382 38.172 51.133 33.332 52.971 41.765 53.174 36 51 36 51 44 51 1 1 1 1 1 1 5724.8 12704 2707 12575 19553 25520 25520 1 LQIVEMPLAHK Unmodified 1277.7166 0.71657828 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 8 0 1 59.675 59.675 3 0.016474 17438 TMT1-7 55.314 31.022 122.74 135.61 176.18 74.795 114.02 112.94 116 138 174 80 116 109 1 1 1 1 1 1 10751 12705 1223 12576 19554 25521 25521 1 LQIVFDFVASK Unmodified 1265.702 0.70197407 2931 Q9UNN5-2;Q9UNN5 FAF1 FAS-associated factor 1 yes no 0 0 0 0 0 9 0 1 86.764 86.764 2 0.00047163 26198 TMT1-8 96.64 52.505 23.375 21.486 20.674 38.686 27.779 22.659 22 22 22 37 29 22 1 1 1 1 1 1 2741.1 12706 2931 12577 19555 25522 25522 1 LQIWDTAGQESFR Unmodified 1549.7525 0.75250609 1370 P61019;P61019-2;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B yes no 0 0 0 0 0 6 0 1 64.218 64.218 3 8.79E-12 19756 TMT1-5 112.15 100.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12707 1370 12578 19556 25523 25523 1 LQKPNAAIR Unmodified 1009.6033 0.60326308 1224 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 1 9 0 1 37.763 37.763 3 0.0032909 7294 TMT1-8 83.623 44.787 200.66 238.14 156.81 192.8 235.41 227.8 189 239 167 189 241 220 1 1 1 1 1 1 29239 12708 1224 12579 19557 25524 25524 1 LQLCYQLTTVGK Unmodified 1422.7541 0.754086 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 64.438 64.438 3 9.5016E-05 17464 TMT1-8 94.191 62.964 91.921 131.02 129.27 93.071 104.53 151.59 87 131 131 94 109 145 1 1 1 1 1 1 13801 12709 1287 12580 19558 25525 25525 1 LQLDDDIDGETR Unmodified 1388.642 0.64195259 1990 Q5VWJ9 SNX30 Sorting nexin-30 yes yes 0 0 0 0 0 2 0 1 54.155 54.155 2 0.00015533 16551 TMT1-1 81.494 63.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12710 1990 12581 19559 25526 25526 1 LQLDSPEDAEFIVAK Unmodified 1673.8512 0.85121708 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 5 0 1 71.271 71.271 3 5.5831E-06 22295 TMT1-4 98.694 81.814 61.263 103.13 75.776 96.253 104.9 136.65 58 102 80 94 109 131 1 1 1 1 1 1 22110 12711 162 12582 19560 25527 25527 1 LQLEACETR Unmodified 1118.539 0.53900784 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 43.369 43.369 2 0.0021551 11622 TMT1-3 105.1 63.874 68.874 110.45 52.868 65.426 131.22 81.536 65 109 58 65 131 80 1 1 1 1 1 1 22238 12712 1833 12583 19561 25528 25528 1 LQLEETDHQK Unmodified 1239.6095 0.60953025 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 38.973 38.973 3 0.00010063 9899 TMT1-3 114.86 79.448 253.2 491.66 309.59 228.99 500.67 496.33 240 483 324 235 505 479 1 1 1 1 1 1 34175 12713 1833 12584 19562 25529 25529 1 LQLELSK Unmodified 829.49092 0.49091866 429 P02545-2;P02545-6;P02545-3;P02545 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 7 0 1 56.856 56.856 2 0.0083373 16195 TMT1-6 117.04 22.734 261.02 452.09 290.18 304.23 280.98 426.91 247 446 307 299 296 408 1 1 1 1 1 1 52081 12714 429 12585 19563 25530 25530 1 LQLEYCSLSAASCEPLASVLR Unmodified 2366.161 0.16101703 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 7 0 2 77.834 77.834 3;4 7.0321E-11 24429 TMT1-6 101.94 86.995 122.68 190.51 138.61 139.81 147.1 189.81 116 189 145 138 153 182 3 3 3 3 3 3 45057 12715 681 12586 19564;19565 25531;25532;25533 25531 3 LQLFGQDFSHAAR Unmodified 1488.7474 0.74736113 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 8 0 1 57.819 57.819 2 1.2355E-05 16705 TMT1-7 113.38 68.626 38.058 34.627 66.471 35.679 42.56 53.152 36 36 65 37 44 51 1 1 1 1 1 1 5996.2 12716 2309 12587 19566 25534 25534 1 LQLHESQK Unmodified 981.52434 0.52434406 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 34.493 34.493 3 0.0019366 7955 TMT1-5 99.802 27.255 169.88 203.43 129.65 148.35 128.03 276.7 160 204 138 145 138 263 1 1 1 1 1 1 25995 12717 1766 12588 19567 25535 25535 1 LQLLEDDKENR Unmodified 1371.6994 0.69940789 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 4.5 0.5 1 1 51.087 51.087 3 0.0017375 14736 TMT1-3 87.026 58.798 252.58 402.35 308.56 299.55 354.98 440.79 239 399 321 297 367 423 2 2 2 2 2 2 45161 12718 606 12589 19568;19569 25536;25537 25536 2 LQLLEPFDKWDGK Unmodified 1587.8297 0.82969378 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 1 8 0 1 73.17 73.17 3 0.019575 22735 TMT1-7 54.402 37.909 53.779 95.086 78.013 57.717 54.629 98.645 51 94 80 58 58 94 1 1 1 1 1 1 7180.3 12719 2492 12590 19570 25538 25538 1 LQLLLLNPLK Unmodified 1163.7642 0.7641804 2090 Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7 MON2 Protein MON2 homolog yes no 0 0 0 0 0 9 0 1 83.007 83.007 3 0.0017576 24749 TMT1-8 71.349 50.049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12720 2090 12591 19571 25539 25539 1 LQLQEDDDDPLIG Unmodified 1469.6886 0.68856843 3065 Q9Y6X5 ENPP4 Bis(5'-adenosyl)-triphosphatase ENPP4 yes yes 0 0 0 0 0 2 0 1 73.949 73.949 2 0.00036105 24019 TMT1-1 96.143 77.471 0 7.448 0 7.5245 6.7267 7.2701 0 7 0 7 7 7 0 1 0 1 1 1 3782.2 12721 3065 12592 19572 25540 25540 1 LQLQEQLQAETELCAEAEELR Unmodified 2500.2115 0.21153228 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.14 0.515 1 10 3 75.855 75.855 3;4 4.2214E-24 24882 TMT1-2 135.49 120.88 271.93 281.11 264.75 181.15 228.65 251.45 256 285 269 182 234 242 10 11 12 9 11 13 48477 12722 1019 12593 19573;19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586 25541;25542;25543;25544;25545;25546;25547;25548;25549;25550;25551;25552;25553;25554;25555;25556;25557;25558;25559;25560;25561;25562;25563 25545 23 LQLQPKPR Unmodified 978.59745 0.59744942 2057 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 0 1 9 0 1 39.196 39.196 3 0.047535 7840 TMT1-8 44.961 24.336 77.058 116.31 114.97 71.37 83.302 128.74 73 116 116 73 87 123 1 1 1 1 1 1 3529.2 12723 2057 12594 19587 25564 25564 1 LQLSEEEAK Unmodified 1045.5292 0.52915466 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 MYO5A Unconventional myosin-Va yes no 0 0 0 0 0 4 0 1 46.85 46.85 2 0.024697 13056 TMT1-3 76.143 49.545 37.87 65.404 71.937 65.865 47.438 83.926 36 65 73 65 51 80 1 1 1 1 1 1 6624.1 12724 3016 12595 19588 25565 25565 1 LQLVVLR Unmodified 839.55927 0.559273 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 9 0 1 60.822 60.822 2 0.038884 16001 TMT1-8 84.699 35.292 200.39 222.28 215.59 133.42 242.93 240.38 189 225 218 138 246 232 2 2 2 2 2 2 25767 12725 2852 12596 19589 25566;25567 25566 2 LQLWAFK Unmodified 904.51707 0.51707383 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 71.231 71.231 2 0.01319 20133 TMT1-8 110.35 46.868 214.9 266.23 265.05 201.03 268.56 317.47 203 268 269 203 276 305 2 2 2 2 2 2 20164 12726 3042 12597 19590 25568;25569 25568 2 LQLWDIAGQER Unmodified 1327.6884 0.68844927 1734;1341;117 Q13637;O14966;P57729 RAB32;RAB29;RAB38 Ras-related protein Rab-32;Ras-related protein Rab-7L1;Ras-related protein Rab-38 no no 0 0 0 0 0 6.5 0.5 1 1 67.072 67.072 2 2.8986E-23 20334 TMT1-6 196.44 146.4 207.34 337.84 212.6 214.08 147.82 282.54 196 334 225 210 160 269 3 3 3 3 3 3 54635 12727 1734;117;1341 12598 19591;19592 25570;25571;25572 25572 3 LQLWDTAGQER Unmodified 1315.6521 0.65206377 2733;810 P20340;P20340-2;P20340-4;Q14964;Q9NRW1;Q9NRW1-2 RAB6A;RAB39A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-39A;Ras-related protein Rab-6B no no 0 0 0 0 0 5.75 0.433 1 3 56.84 56.84 2;3 1.7528E-09 16728 TMT1-5 166.66 0 1058.1 1370.1 1159 1066.3 1118.7 1330.4 999 1373 1196 1058 1160 1278 5 5 5 5 5 5 335950 12728 810;2733 12599 19593;19594;19595;19596 25573;25574;25575;25576;25577 25576 5 LQMALELMR Unmodified 1103.5831 0.58312126 2229 Q8NG06 TRIM58 E3 ubiquitin-protein ligase TRIM58 yes yes 0 0 0 0 0 9 0 1 71.778 71.778 2 0.041074 20339 TMT1-8 65.347 28.653 37.815 96.55 54.811 44.037 41.919 60.632 36 94 58 44 44 58 1 1 1 1 1 1 7118.4 12729 2229 12600 19597 25578 25578 1 LQNALNEQR Unmodified 1084.5625 0.56252048 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 39.545 39.545 2 0.0016638 9885 TMT1-4 115.86 56.264 54.151 64.821 41.124 52.112 62.729 83.49 51 65 44 51 65 80 1 1 1 1 1 1 8965.7 12730 1805 12601 19598 25579 25579 1 LQNLQLQPGNAK Unmodified 1322.7306 0.73064844 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 0 8 0 2 52.94 52.94 2;3 2.2836E-13 14756 TMT1-7 171.56 124.75 198.17 331.41 315.86 188.98 341.64 337.77 188 329 319 196 346 326 2 2 2 2 2 2 37741 12731 844 12602 19599;19600 25580;25581 25581 2 LQNLSYTEILK Unmodified 1320.7289 0.7289171 2301 Q92556;Q92556-3;Q92556-2 ELMO1 Engulfment and cell motility protein 1 yes no 0 0 0 0 0 7 0 1 66.884 66.884 3 0.0011152 20196 TMT1-6 85.522 44.534 68.684 102.36 91.651 80.123 98.605 128.3 65 102 94 80 102 123 1 1 1 1 1 1 16577 12732 2301 12603 19601 25582 25582 1 LQNVQIALDFLK Unmodified 1400.8028 0.80275075 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 9 0 1 82.364 82.364 2 0.0038872 24506 TMT1-8 77.64 48.554 15.682 29.049 44.858 20.83 28.856 15.167 15 29 44 22 29 15 1 1 1 1 1 1 2484.7 12733 2935 12604 19602 25583 25583 1 LQNVQIALDYLR Unmodified 1444.8038 0.80381338 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 74.032 74.032 2 0.0029416 23071 TMT1-7 63.401 30.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12734 1833 12605 19603 25584 25584 1 LQPDSRALHYMKK Phospho (STY) 1665.8062 0.80621172 221 O60383 GDF9 Growth/differentiation factor 9 yes yes 0 0 0 1 2 9 0 1 99.034 99.034 3 0.028393 30689 TMT1-8 48.568 26.093 15.932 14.635 14.97 6.7588 0 0 15 15 15 7 0 0 1 1 1 1 0 0 3724.8 12735 221 12606 19604 25585 25585 2 1 LQPFATEADVEEALR Unmodified 1687.8417 0.84171503 1003 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 0 4 0 1 69.588 69.588 3 1.1434E-05 21966 TMT1-3 92.575 78.896 23.297 28.826 27.478 46.076 20.11 22.878 22 29 29 44 22 22 1 1 1 1 1 1 4516.1 12736 1003 12607 19605 25586 25586 1 LQPFNEYR Unmodified 1065.5243 0.52434406 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 5.5 0.5 1 1 49.123 49.123 2 0.0010902 13687 TMT1-5 145.16 118.02 291.39 456.51 412.63 339.41 462.98 501.67 276 454 422 341 474 483 3 3 3 3 3 3 81221 12737 855 12608 19606;19607 25587;25588;25589 25588 3 LQPGLLEPSELQGLGALEATAWALK Unmodified 2604.4163 0.41630374 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 7.5 0.5 1 1 96.69 96.69 3;4 2.0909E-07 31554 TMT1-7 69.619 47.398 30.702 36.651 38.718 49.574 30.953 37.493 29 37 40 48 33 36 2 2 2 2 2 2 6903.2 12738 2256 12609 19608;19609 25590;25591 25591 2 LQPGSVPK Unmodified 824.4756 0.47560295 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 0 5.33 3.09 1 1 1 42.828 42.828 2 0.0056256 10620 TMT1-6 116.25 45.338 777.74 1154.7 856.55 624.38 699.59 1119.6 735 1148 885 630 733 1069 4 4 4 4 4 4 219500 12739 2463 12610 19610;19611;19612 25592;25593;25594;25595 25593 4 LQPMVIQIQPPNPSSPTPTLFLPSDPPLAWLLAK Unmodified 3706.0208 0.020812374 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 9 0 2 104.09 104.09 4;5 1.8923E-06 32518 TMT1-8 47.537 43.005 35.811 74.425 49.776 32.3 42.679 57.412 34 73 50 33 43 55 3 3 2 3 2 3 6828.6 12740 772 12611 19613;19614 25596;25597;25598 25598 3 LQQDDNWVESYLSWR Unmodified 1937.8908 0.89079049 2232 Q8NHP6 MOSPD2 Motile sperm domain-containing protein 2 yes yes 0 0 0 0 0 6 0 1 78.982 78.982 3 0.029046 25561 TMT1-5 43.454 24.131 23.249 37.326 28.384 14.302 21.314 30.306 22 37 29 15 22 29 1 1 1 1 1 1 4015.1 12741 2232 12612 19615 25599 25599 1 LQQEETQLEQSIQAGR Unmodified 1856.9228 0.9228189 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 3 0 1 60.195 60.195 3 1.2658E-16 19247 TMT1-2 140.49 135.94 39.082 65.716 48.381 59.736 41.197 60.652 37 65 51 58 44 58 2 2 2 2 2 2 13468 12742 2835 12613 19616 25600;25601 25600 2 LQQEIENLK Unmodified 1113.603 0.60298831 1953 Q567U6 CCDC93 Coiled-coil domain-containing protein 93 yes yes 0 0 0 0 0 5 0 1 58.76 58.76 3 0.010637 17424 TMT1-4 65.535 17.682 68.88 86.721 71.916 34.112 50.511 36.935 65 87 73 36 51 36 1 1 1 1 1 1 5621.8 12743 1953 12614 19617 25602 25602 1 LQQELDDLLVDLDHQR Unmodified 1948.9854 0.98541915 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 4.55 2.23 1 3 3 1 1 1 1 79.369 79.369 3 3.5903E-82 26876 TMT1-3 254.38 225.28 584.26 793.42 699.95 661.54 672.92 804.82 552 793 718 655 698 773 20 20 20 21 20 21 487220 12744 1019 12615 19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628 25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620;25621;25622;25623;25624;25625 25614 23 LQQETAELEESVESGK Unmodified 1775.8425 0.84250289 1098 P42566;P42566-2 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 0 0 0 0 2 0 1 65.511 65.511 3 0.00013579 20881 TMT1-1 77.468 56.515 18.953 33.291 32.505 24.866 27.755 41.848 18 33 33 25 29 40 1 1 1 1 1 1 9524.4 12745 1098 12616 19629 25626 25626 1 LQQHSIPVFIFSAGIGDVLEEVIR Unmodified 2666.4432 0.44318719 2613 Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 0 8 0 2 95.343 95.343 3;4 1.1781E-06 31016 TMT1-7 71.696 64.481 7.4331 31.419 0 31.294 21.434 30.302 7 30 0 29 22 29 1 2 0 3 2 3 4187 12746 2613 12617 19630;19631 25627;25628;25629 25627 3 LQQIAAALENK Unmodified 1197.6717 0.67173657 123 O15031 PLXNB2 Plexin-B2 yes yes 0 0 0 0 0 8 0 1 70.11 70.11 3 0.00070188 21545 TMT1-7 89.805 62.656 46.622 57.728 50.253 27.619 57.589 52.723 44 58 51 29 58 51 1 1 1 1 1 1 4956.7 12747 123 12618 19632 25630 25630 1 LQQLFNHTMFILEQEEYQR Oxidation (M) 2482.1951 0.19509435 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 1 0 0 7.5 0.5 1 1 72.218 72.218 3 1.2068E-12 22241 TMT1-6 104.88 96.957 92.988 146.05 117.52 142.31 139.16 174.05 88 145 123 139 145 167 3 3 3 3 3 3 47172 12748 1019;1020;1029 12619 19633;19634 25631;25632;25633 25631 187 3 LQQLFNHTMFILEQEEYQR Unmodified 2466.2002 0.20017973 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 0 0 0 7.33 0.471 2 1 81.98 81.98 3 2.5705E-37 25818 TMT1-7 167.19 155.23 271.29 349.52 274.54 233.7 244.78 326.67 256 350 284 233 255 313 7 7 7 7 7 7 175260 12749 1019;1020;1029 12619 19635;19636;19637 25634;25635;25636;25637;25638;25639;25640 25639 7 LQQLGEAHQAETEVLR Unmodified 1820.9381 0.93807503 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 4 0 1 48.855 48.855 3 6.0711E-16 13805 TMT1-3 133.96 124.68 54.058 64.561 57.056 34.875 56.998 60.202 51 65 58 36 58 58 1 1 1 1 1 1 15934 12750 1805 12620 19638 25641 25641 1 LQQLPADFGR Unmodified 1143.6037 0.60365701 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 6 0 1 55.076 55.076 2 1.0248E-19 16152 TMT1-5 167.67 76.355 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12751 2362 12621 19639 25642 25642 1 LQQQLEER Unmodified 1042.5407 0.5407224 1867 Q15642-4;Q15642-2;Q15642-3;Q15642 TRIP10 Cdc42-interacting protein 4 yes no 0 0 0 0 0 3 0 1 38.873 38.873 2 0.030859 10825 TMT1-2 81.163 41.859 46.248 80.434 93.786 64.271 62.976 60.031 44 80 94 65 65 58 1 1 1 1 1 1 7188.3 12752 1867 12622 19640 25643 25643 1 LQQSHPLSATQIQVK Unmodified 1676.921 0.9209684 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 45.906 45.906 3 6.1307E-28 12000 TMT1-7 185.57 158.04 53.837 72.582 87.322 49.07 78.061 97.976 51 73 87 51 80 94 1 1 1 1 1 1 12217 12753 1737 12623 19641 25644 25644 1 LQQTEAELR Unmodified 1086.5669 0.56693715 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 3 0 1 42.109 42.109 2 0.00063149 12124 TMT1-2 132.39 96.953 61.265 103.14 75.392 104.86 113.19 96.974 58 102 80 102 116 94 1 1 1 1 1 1 13981 12754 903 12624 19642 25645 25645 1 LQQTLNALNK Unmodified 1141.6455 0.64552182 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 8.5 0.5 1 1 57.971 57.971 2;3 5.2364E-09 14955 TMT1-8 170.85 112.16 99.099 160.88 160.03 65.879 174.35 134.67 94 160 160 72 174 131 2 2 2 2 2 2 13210 12755 1723 12625 19643;19644 25646;25647 25647 2 LQQTQEYFIIQYQESLR Unmodified 2186.1008 0.10078326 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 7 0 1 72.416 72.416 3 0.0028268 22339 TMT1-6 54.143 38.889 30.607 51.498 42.02 52.615 33.148 60.882 29 51 44 51 36 58 1 1 1 1 1 1 11443 12756 1093;1253 12626 19645 25648 25648 1 LQQTYAALNSK Unmodified 1235.651 0.65100113 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 53.045 53.045 2 4.8648E-12 14807 TMT1-7 176.78 124.06 84.794 108.86 83.617 79.878 137.08 104.82 80 109 87 80 138 102 1 1 1 1 1 1 17695 12757 1139 12627 19646 25649 25649 1 LQQVLQMESHIQSTSDR Unmodified 1998.9793 0.97928792 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 7 1 1 1 59.229 59.229 3 4.4552E-05 17299 TMT1-7 78.501 69.569 100.46 161.61 110.82 100.68 165.42 134.93 95 160 116 101 167 131 2 2 2 2 2 2 22511 12758 1803 12628 19647;19648 25650;25651 25651 2 LQSEPESIR Unmodified 1057.5404 0.54038805 596 P09496-2;P09496-4;P09496-3;P09496 CLTA Clathrin light chain A yes no 0 0 0 0 0 2.5 0.5 1 1 38.343 38.343 2 0.00021102 10617 TMT1-2 145.46 67.269 130.73 112.69 114.6 78.458 114.4 96.939 123 116 116 80 116 94 1 1 1 1 1 1 22457 12759 596 12629 19649;19650 25652;25653 25653 2 LQSEPESIRK Unmodified 1185.6354 0.63535107 596 P09496-2;P09496-4;P09496-3;P09496 CLTA Clathrin light chain A yes no 0 0 0 0 1 5.33 0.471 2 1 36.192 36.192 3 0.0023759 9107 TMT1-5 87.777 60.679 468.62 666.53 564.05 426.25 479.85 594.99 443 665 578 429 497 571 3 3 3 3 3 3 89851 12760 596 12630 19651;19652;19653 25654;25655;25656 25656 3 LQSEVAELK Unmodified 1015.555 0.55497548 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 0 5 0 1 54.001 54.001 2 0.0014556 15552 TMT1-4 119.22 42.032 161.24 195.23 145.77 138.49 194.31 187.4 152 196 152 138 198 181 1 1 1 1 1 1 35164 12761 1292 12631 19654 25657 25657 1 LQSGICHLFR Unmodified 1229.6339 0.63391128 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 51.129 51.129 3 0.00075917 12214 TMT1-8 91.701 62.285 153.57 210.41 160.06 162.5 151.26 251.52 145 210 167 160 160 240 1 1 1 1 1 1 22935 12762 714 12632 19655 25658 25658 1 LQSGTHCLWTDQLLQGSEK Unmodified 2200.0583 0.058266521 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 7 0 1 60.439 60.439 3 1.1968E-06 17640 TMT1-6 82.36 59.924 30.408 74.688 55.84 51.224 63.319 67.483 29 73 58 51 65 65 1 1 1 1 1 1 18490 12763 410 12633 19656 25659 25659 1 LQSIGTENTEENR Unmodified 1489.7009 0.70086445 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 2 0 1 40.901 40.901 2 8.9568E-13 11325 TMT1-1 161.87 110.67 54.071 41.933 73.971 49.985 71.753 67.243 51 44 73 51 73 65 1 1 1 1 1 1 8358.2 12764 459 12634 19657 25660 25660 1 LQSIGTENTEENRR Unmodified 1645.802 0.80197548 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 3.5 1.71 1 1 1 1 1 1 34.316 34.316 3 1.9252E-18 9116 TMT1-2 155.43 126.81 1427.9 2331.6 1854 1446.3 1896.9 2101.3 1352 2311 1909 1457 1946 2022 9 9 9 9 9 9 565360 12765 459 12635 19658;19659;19660;19661;19662;19663 25661;25662;25663;25664;25665;25666;25667;25668;25669 25665 9 LQSLDALLEMK Unmodified 1259.6795 0.67952407 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 7 0 1 80.863 80.863 3 0.00093748 25602 TMT1-6 87.363 56.793 54.252 42.437 43.143 36.937 49.574 60.413 51 44 44 37 51 58 2 2 2 2 2 2 7654.2 12766 356 12636 19664 25670;25671 25670 2 LQSLGVPGAAASR Unmodified 1225.6779 0.67788459 2114 Q86V88-3;Q86V88-2;Q86V88 MDP1 Magnesium-dependent phosphatase 1 yes no 0 0 0 0 0 8 0 1 51.205 51.205 2 0.0015971 14077 TMT1-7 84.169 30.999 38.016 43.143 66.363 26.647 58.183 36.716 36 44 65 29 58 36 1 1 1 1 1 1 5896.1 12767 2114 12637 19665 25672 25672 1 LQSQLLSLEK Unmodified 1157.6656 0.66558856 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 7 0 2 62.096 62.096 2 0.00018905 18570 TMT1-6 130.01 0 138.47 188.54 192.58 167.87 169.15 149.74 131 189 196 167 174 145 2 2 2 2 2 2 23255 12768 1226 12638 19666;19667 25673;25674 25674 2 LQSSEAEVR Unmodified 1017.5091 0.50908792 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 2 0 1 34.053 34.053 2 0.0023908 8605 TMT1-1 76.282 26.859 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12769 2828 12639 19668 25675 25675 1 LQSSNIFTVAK Unmodified 1206.6608 0.66083754 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 60.23 60.23 3 9.4188E-08 15791 TMT1-8 132.32 70.061 177.36 171.52 163.01 145.88 153.63 204.55 167 175 167 145 160 196 1 1 1 1 1 1 33158 12770 1637 12640 19669 25676 25676 1 LQSTFVFEEIGR Unmodified 1424.73 0.72997974 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 6 0 1 69.229 69.229 2 4.2921E-05 21718 TMT1-5 111.26 66.947 107.87 160.83 127.77 84.784 143.12 135.56 102 160 131 87 145 131 1 1 1 1 1 1 29068 12771 1250 12641 19670 25677 25677 1 LQSTFVFEEIGRR Unmodified 1580.8311 0.83109076 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 7.5 0.5 1 1 60.221 60.221 3 6.6578E-05 17572 TMT1-6 99.991 77.517 68.888 86.744 70.522 65.383 77.568 90.529 65 87 73 65 80 87 1 1 1 1 1 1 9506.3 12772 1250 12642 19671;19672 25678;25679 25678 2 LQSVLGK Unmodified 743.45414 0.45413923 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 9 0 1 53.834 53.834 2 0.010716 13271 TMT1-8 119.29 20.833 162.05 573.78 411.37 369.95 412.11 510.58 156 556 428 368 427 490 1 1 1 1 1 1 52500 12773 1720 12643 19673 25680 25680 1 LQSVQALTEIQEFISFISK Unmodified 2180.1729 0.17288557 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 106.98 106.98 3 3.4249E-10 33468 TMT1-8 90.968 72.603 11.637 7.0498 21.983 30.071 16.804 18.708 11 7 22 29 18 18 2 1 2 2 2 2 3553.4 12774 1507 12644 19674 25681;25682 25682 2 LQTAYAGEK Unmodified 979.49746 0.4974606 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 42.609 42.609 2 0.0014978 11220 TMT1-5 80.763 18.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12775 651 12645 19675 25683 25683 1 LQTGSYCLPVALEK Unmodified 1577.8123 0.81232916 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 7 0 1 66.13 66.13 2 3.7746E-05 19902 TMT1-6 100.54 87.981 30.853 28.437 20.279 37.33 43.033 37.148 29 29 22 36 44 36 1 1 1 1 1 1 4317.5 12776 2223 12646 19676 25684 25684 1 LQTHADLNK Unmodified 1038.5458 0.54580778 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 36.298 36.298 3 6.9746E-06 8714 TMT1-5 123.51 60.438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12777 651 12647 19677 25685 25685 1 LQTQVFK Unmodified 862.49125 0.49125301 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 0 8 0 1 50.169 50.169 2 0.0014443 13680 TMT1-7 147.34 73.719 175.86 288.23 315.91 224.18 329.65 274.15 167 287 318 228 334 266 1 1 1 1 1 1 29667 12778 1135 12648 19678 25686 25686 1 LQTSSVLVSGLR Unmodified 1258.7245 0.72450043 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 8.5 0.5 1 1 56.981 56.981 2 3.3557E-13 14487 TMT1-8 164.81 113.75 308.11 318.81 244.49 216.83 307.39 261.99 290 323 254 217 312 254 2 2 2 2 2 2 57181 12779 845 12649 19679;19680 25687;25688 25688 2 LQTVAEK Unmodified 787.44397 0.44396847 1888 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 0 6 0 1 41.91 41.91 2 0.012357 10957 TMT1-5 103.56 36.881 191.61 202.89 265.61 130.55 236.63 184.06 181 207 263 138 238 179 1 1 1 1 1 1 18589 12780 1888 12650 19681 25689 25689 1 LQTVGGYTGK Unmodified 1022.5397 0.53965977 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 0 7 0 1 47.078 47.078 3 0.010272 12368 TMT1-6 63.944 39.914 108.51 83.818 85.705 64.048 100.41 97.339 102 87 87 65 102 94 1 1 1 1 1 1 5540.4 12781 614 12651 19682 25690 25690 1 LQTVLEAVHDLLR Unmodified 1505.8566 0.85657723 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 9 0 1 86.917 86.917 3 3.506E-06 26312 TMT1-8 99.668 77.194 15.861 30.628 13.288 22.994 13.842 23.057 15 30 15 22 15 22 1 1 1 1 1 1 5938.3 12782 2682 12652 19683 25691 25691 1 LQTVLEAVHDLLRPR Unmodified 1759.0105 0.010452112 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 1 9 0 2 81.01 81.01 3;4 2.2314E-19 23966 TMT1-8 144.68 104.16 475.8 536.48 549.6 414.95 603.74 657.55 449 543 557 420 617 633 3 3 3 3 3 3 285010 12783 2682 12653 19684;19685 25692;25693;25694 25693 3 LQVALGELR Unmodified 997.59203 0.59202969 793 P19474;P19474-2 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes no 0 0 0 0 0 7 0 1 59.825 59.825 2 0.0021059 17391 TMT1-6 106.18 17.808 92.245 100.62 100.68 71.33 130.69 89.013 87 102 102 73 131 87 1 1 1 1 1 1 14872 12784 793 12654 19686 25695 25695 1 LQVEEVHQLSR Unmodified 1336.7099 0.709913 2720 Q9NR28-2;Q9NR28-3;Q9NR28 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 0 4 0 1 41.791 41.791 3 3.9471E-06 11013 TMT1-3 119.69 84.178 160.9 280.61 131.62 171.21 184.61 182.35 152 276 145 167 190 176 1 1 1 1 1 1 28737 12785 2720 12655 19687 25696 25696 1 LQVELDNVTGLLSQSDSK Unmodified 1945.0004 0.0004005156 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 5.56 1.71 1 1 5 2 77.246 77.246 2;3;4 1.329E-30 25083 TMT1-5 170.16 168.74 1685.5 2156.8 1982.6 1728.7 1993.5 2202 1592 2165 2031 1724 2054 2119 12 12 12 12 12 12 925710 12786 1019 12656 19688;19689;19690;19691;19692;19693;19694;19695;19696 25697;25698;25699;25700;25701;25702;25703;25704;25705;25706;25707;25708;25709;25710;25711 25707 15 LQVEPAVDTSGVQCYGPGIEGQGVFR Unmodified 2762.3334 0.33337875 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.67 1.89 1 2 68.849 68.849 3;4 4.8332E-29 21424 TMT1-4 125.08 116.78 184.87 262.94 264.89 188.04 204.07 232.96 175 263 268 190 211 224 4 4 4 4 4 4 1030300 12787 831 12657 19697;19698;19699 25712;25713;25714;25715 25714 4 LQVEQAPHSSPGAK Unmodified 1447.7419 0.7419414 2179 Q8N4P3;Q8N4P3-2 HDDC3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 yes no 0 0 0 0 0 6 0 1 36.512 36.512 3 0.041236 8800 TMT1-5 40.801 24.912 30.64 44.034 42.825 44.594 50.285 29.479 29 44 44 44 51 29 1 1 1 1 1 1 4045 12788 2179 12658 19700 25716 25716 1 LQVGQELIDYFSDK Unmodified 1653.825 0.82500233 2093 Q7Z460-2;Q7Z460-4;Q7Z460-5;Q7Z460-3;Q7Z460 CLASP1 CLIP-associating protein 1 yes no 0 0 0 0 0 7 0 1 84.286 84.286 3 0.00095189 26960 TMT1-6 72.175 52.597 30.652 51.622 34.416 28.835 43.131 45.673 29 51 36 29 44 44 1 1 1 1 1 1 3812.6 12789 2093 12659 19701 25717 25717 1 LQVIQFK Unmodified 874.52764 0.52763852 737 P16219 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 61.098 61.098 2 0.020981 16195 TMT1-8 94.407 35.426 100.11 77.352 60.89 96.401 144.2 88.627 94 80 65 94 145 87 1 1 1 1 1 1 11665 12790 737 12660 19702 25718 25718 1 LQVLDPVPKPVIK Unmodified 1444.9017 0.90173651 584 P09326 CD48 CD48 antigen yes yes 0 0 0 0 1 9 0 1 62.165 62.165 3 0.0011356 16612 TMT1-8 69.03 52.398 84.582 123.38 106.92 71.554 98.999 128.29 80 123 109 73 102 123 1 1 1 1 1 1 10131 12791 584 12661 19703 25719 25719 1 LQVLLTYR Unmodified 1004.6019 0.6018661 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 9 0 1 64.24 64.24 2 0.0069389 17385 TMT1-8 101.72 62.075 92.348 132.21 56.516 121.59 97.468 105.95 87 131 65 116 102 102 1 1 1 1 1 1 22514 12792 2648 12662 19704 25720 25720 1 LQVLVGDVLK Unmodified 1082.6699 0.66994566 2932 Q9UNQ2 DIMT1 Probable dimethyladenosine transferase yes yes 0 0 0 0 0 8 0 1 74.348 74.348 2 0.0016606 23196 TMT1-7 71.524 30.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12793 2932 12663 19705 25721 25721 1 LQVNLLVKPSEK Unmodified 1366.8184 0.81840081 749 P16671;P16671-3;P16671-4 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 1 9 0 2 58.253 58.253 3;4 3.5131E-06 15000 TMT1-8 108.17 81.072 1196.2 1412.7 1173.7 1612 1347.8 1665 1128 1422 1235 1562 1414 1598 4 4 4 4 4 4 111380 12794 749 12664 19706;19707 25722;25723;25724;25725 25723 4 LQVTMPGIK Unmodified 985.56304 0.56303775 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 9 0 1 60.148 60.148 2 0.0014571 15784 TMT1-8 110.76 47.083 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12795 1632 12665 19708 25726 25726 1 LQVTNVLSQPLTQATVK Unmodified 1839.0466 0.046562847 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 9 0 1 34.914 34.914 5 0.040927 6384 TMT1-8 25.957 8.2126 146.48 149.5 140.59 147.91 116.93 143.77 138 152 145 145 123 138 1 1 1 1 1 1 10301 12796 479 12666 19709 25727 25727 1 LQVWDQDSGRDDDLLGTCDQAPK Unmodified 2631.1871 0.18710844 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 1 4 0 2 62.739 62.739 3;4 1.7662E-17 19325 TMT1-3 109.75 81.342 123 160.08 111.51 84.749 196.52 134.04 116 160 116 87 196 131 2 2 2 2 2 2 37760 12797 699 12667 19710;19711 25728;25729 25729 2 LQWFCDR Unmodified 1023.4596 0.45963531 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 59.762 59.762 2 0.019488 17445 TMT1-7 98.009 62.909 84.645 139.75 82.441 64.697 76.28 128.94 80 138 87 65 80 123 1 1 1 1 1 1 8603.1 12798 1101 12668 19712 25730 25730 1 LQWLLDESFK Unmodified 1277.6656 0.66558856 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 8 0 1 82.118 82.118 2 0.0014457 26176 TMT1-7 92.611 51.617 61.251 103.1 77.843 49.902 63.893 52.543 58 102 80 51 65 51 1 1 1 1 1 1 4712.6 12799 2791 12669 19713 25731 25731 1 LQWLLDESFKGDK Unmodified 1577.809 0.80895834 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 1 8 0 2 73.572 73.572 3;4 0.0015776 22871 TMT1-7 73.927 62.983 245.45 349.95 289.25 245.85 365.68 383.99 232 349 298 247 373 370 2 2 2 2 2 2 43402 12800 2791 12670 19714;19715 25732;25733 25732 2 LQYFMEQFYGIIR Unmodified 1706.849 0.84904901 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 92.08 92.08 3 0.001931 28157 TMT1-8 61.212 39.339 23.421 36.725 0 23.526 27.67 46.114 22 36 0 22 29 44 1 1 0 1 1 1 2900.1 12801 1507 12671 19716 25734 25734 1 LQYLSSK Unmodified 837.45962 0.45961853 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 8 0 1 50.79 50.79 2 0.015228 13946 TMT1-7 101.33 21.859 99.418 114.28 145.79 83.99 128.24 143.45 94 116 145 87 131 138 1 1 1 1 1 1 9381.7 12802 1552 12672 19717 25735 25735 1 LRAETEQGEQQR Unmodified 1443.7066 0.70661853 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2 0 1 25.746 25.746 3 0.001023 5334 TMT1-1 83.314 58.018 30.882 20.962 21.736 14.689 21.809 15.368 29 22 22 15 22 15 1 1 1 1 1 1 2004.1 12803 1833 12673 19718 25736 25736 1 LRDDTELR Unmodified 1016.5251 0.52507234 751 P16930;P16930-2 FAH Fumarylacetoacetase yes no 0 0 0 0 1 2 0 1 33.232 33.232 3 0.0062172 8277 TMT1-1 69.716 22.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12804 751 12674 19719 25737 25737 1 LRDEINLAK Unmodified 1070.6084 0.60840804 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 1 6 0 1 46.419 46.419 3 0.00056746 12711 TMT1-5 116.52 65.713 458.6 488.81 415.29 338.7 376.37 496.68 432 495 427 339 391 476 1 1 1 1 1 1 37232 12805 1724 12675 19720 25738 25738 1 LRDLEDSLAR Unmodified 1186.6306 0.63060004 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 1 4 0 1 50.285 50.285 3 6.9947E-05 14389 TMT1-3 96.229 47.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12806 429 12676 19721 25739 25739 1 LRDYIWNTLNSGR Unmodified 1606.8216 0.82158871 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 1 9 0 1 62.893 62.893 3 0.0018715 16867 TMT1-8 72.209 54.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12807 271 12677 19722 25740 25740 1 LREDENAEPVGTTYQK Unmodified 1848.8854 0.88537076 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 1 3.5 0.5 1 1 41.629 41.629 3;4 1.6125E-35 12001 TMT1-2 195.66 171.37 269.2 317.45 292.06 223.93 243.7 340.56 254 320 298 225 254 326 2 2 2 2 2 2 51213 12808 1897 12678 19723;19724 25741;25742 25741 2 LREDLER Unmodified 929.49304 0.49304393 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 1 2.5 0.5 1 1 32.976 32.976 3 0.0030674 8301 TMT1-1 114.89 47.862 223.22 343.69 244.11 201.42 314.37 292.71 211 341 254 203 319 283 2 2 2 2 2 2 41400 12809 1425 12679 19725;19726 25743;25744 25743 2 LREEVVTK Unmodified 972.5604 0.56039521 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 5 0 1 37.695 37.695 3 0.00211 9091 TMT1-4 110.14 38.912 315.22 435.02 392.54 330.81 228.68 482.77 298 435 402 328 249 459 1 1 1 1 1 1 50095 12810 1723 12680 19727 25745 25745 1 LRETAEADVASLNR Unmodified 1543.7954 0.79543354 592;594 P09493-2;P09493-5 no no 0 0 0 0 1 3.5 0.5 1 1 45.58 45.58 3 0.0003037 13627 TMT1-2 80.411 45.405 93.29 91.84 112.81 150.79 109.98 129.05 88 94 116 146 116 124 2 2 2 2 2 2 16690 12811 592;594 12681 19728;19729 25746;25747 25746 2 LRGEQMASYFGHSVAVTDVNGDGR Unmodified 2565.203 0.20303328 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 6 0 1 53.655 53.655 4 0.0010883 15556 TMT1-5 50.029 40.766 46.201 119.15 69.016 58.096 63.003 67.492 44 116 73 58 65 65 1 1 1 1 1 1 10724 12812 565 12682 19730 25748 25748 1 LRPDDSK Unmodified 829.42938 0.42938104 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 5 0 1 30.49 30.49 3 0.0095137 6316 TMT1-4 91.853 48.77 1208.6 1540.6 1878.1 1242.9 1883.3 1521.8 1144 1554 1878 1272 1905 1478 2 2 2 2 2 2 175340 12813 484 12683 19731 25749;25750 25750 2 LRPEVLQDLR Unmodified 1237.7143 0.71427009 1051 P37235 HPCAL1 Hippocalcin-like protein 1 yes yes 0 0 0 0 1 6.5 0.5 1 1 49.817 49.817 3 0.0054791 13953 TMT1-5 78.043 44.246 169.33 232.11 198.53 166.47 224.88 295.26 160 232 204 167 232 283 2 2 2 2 2 2 26280 12814 1051 12684 19732;19733 25751;25752 25751 2 LRPIPITASVEIQEPSSR Unmodified 1992.1004 0.10038933 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 7 0 1 55.697 55.697 3 3.715E-30 15766 TMT1-6 167.95 158.95 61.29 87.015 84.986 81.225 61.134 90.998 58 87 87 80 65 87 1 1 1 1 1 1 30572 12815 856 12685 19734 25753 25753 1 LRPLSYPQTDVFLICFSLVSPASFENVR Unmodified 3254.6798 0.67980543 1466 P63000;P60763 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 0 1 9 0 1 87.728 87.728 4 0.0021572 26539 TMT1-8 45.666 32.864 7.3124 22.678 14.158 15.131 22.317 0 7 22 15 15 22 0 1 1 1 1 1 0 6176.9 12816 1466 12686 19735 25754 25754 1 LRPLSYPQTDVFLICFSLVSPASYENVR Unmodified 3270.6747 0.67472005 717 P15153 RAC2 Ras-related C3 botulinum toxin substrate 2 yes yes 0 0 0 0 1 9 0 1 84.65 84.65 4 4.6263E-05 25369 TMT1-8 52.402 37.819 23.301 36.39 20.504 22.425 21.197 22.847 22 36 22 22 22 22 1 1 1 1 1 1 10929 12817 717 12687 19736 25755 25755 1 LRPLSYPQTDVFLVCFSVVSPSSFENVK Unmodified 3214.6373 0.63727191 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 1 9 0 1 82.908 82.908 3 5.5734E-09 24691 TMT1-8 67.586 47.548 15.897 22.093 14.534 6.515 14.343 30.505 15 22 15 7 15 29 1 1 1 1 1 1 10048 12818 1363 12688 19737 25756 25756 1 LRPLYDIPYMFEAR Unmodified 1782.9127 0.9127119 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 1 8 0 1 71.421 71.421 3 0.00061998 22022 TMT1-7 77.726 66.782 46.264 95.586 78.389 49.451 86.142 75.36 44 94 80 51 87 73 1 1 1 1 1 1 17115 12819 2071 12689 19738 25757 25757 1 LRPSGDDVELIGEEEDVSVYDIADHPDFR Unmodified 3286.5266 0.52659507 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 1 3 0 1 68.084 68.084 4 8.1496E-18 22331 TMT1-2 94.767 83.456 61.766 41.93 43.116 37.368 26.761 84.516 58 44 44 37 30 80 2 2 2 2 2 2 10448 12820 2594 12690 19739 25758;25759 25758 2 LRQASTNVK Unmodified 1015.5774 0.57744226 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 1 7 0 1 25.217 25.217 3 0.044934 4215 TMT1-6 53.597 16.406 77.555 60.484 78.869 82.404 134.04 37.749 73 63 80 82 133 39 1 1 1 1 1 1 12435 12821 2651 12691 19740 25760 25760 1 LRVDPVNFK Unmodified 1086.6186 0.61857879 1499 P69905;CON__P01966 HBA1 Hemoglobin subunit alpha yes no 0 0 0 0 1 6.5 3.2 1 2 1 51.507 51.507 3 0.00012822 14009 TMT1-7 116.13 59.41 406.97 461.59 279.21 254.04 136.56 222.1 383 464 296 250 149 212 2 2 2 2 2 2 28258 12822 1499 12692 19741;19742;19743;19744 25761;25762;25763;25764 25762 4 LRVEFPR Unmodified 915.52904 0.5290355 1615;1686 Q07955;Q07955-3;Q07955-2;Q13242 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 0 0 0 0 1 8 0 1 44.248 44.248 3 0.022057 11300 TMT1-7 77.282 16.989 99.436 161.82 102.48 117.9 147.61 173.81 94 160 109 116 152 167 1 1 1 1 1 1 10872 12823 1615;1686 12693 19745 25765 25765 1 LSAAVTEAFVR Unmodified 1162.6346 0.63462279 903 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 0 7 0 1 61.78 61.78 3 0.0041488 18188 TMT1-6 71.066 30.999 15.649 36.512 44.066 28.559 27.182 53.59 15 36 44 29 29 51 1 1 1 1 1 1 4517.4 12824 903 12694 19746 25766 25766 1 LSAEAVFEK Unmodified 992.51786 0.51786169 2103 Q86TP1;Q86TP1-2;Q86TP1-5;Q86TP1-4;Q86TP1-3;Q86TP1-6;Q86TP1-7 PRUNE Protein prune homolog yes no 0 0 0 0 0 6 0 1 58.328 58.328 2 0.0050715 17477 TMT1-5 98.044 40.454 77.304 93.245 93.199 56.663 62.52 83.496 73 94 94 58 65 80 1 1 1 1 1 1 16284 12825 2103 12695 19747 25767 25767 1 LSAEEAAHR Unmodified 982.48321 0.48320752 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 3 0 1 27.032 27.032 3 0.0023332 6140 TMT1-2 86.136 68.768 23.281 21.226 36.611 21.331 28.32 30.106 22 22 36 22 29 29 1 1 1 1 1 1 7266 12826 2061 12696 19748 25768 25768 1 LSAHCSCDSR Unmodified 1191.4761 0.47609001 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 6.33 1.7 1 1 1 22.616 22.616 3 0.00045991 3959 TMT1-6 99.568 94.953 20.036 36.482 28.157 20.903 19.78 35.68 19 36 29 21 21 34 3 3 3 3 3 3 2817.9 12827 415 12697 19749;19750;19751 25769;25770;25771 25770 3 LSAKPAPPKPEPK Unmodified 1358.7922 0.79218606 493 P05204;Q15651-2;Q15651 HMGN2;HMGN3 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 3 yes no 0 0 0 0 2 9 0 1 39.942 39.942 4 0.017257 8102 TMT1-8 57.53 45.365 233.81 426.93 377.51 421.12 356.04 643.3 222 422 391 412 380 613 1 1 1 1 1 1 27171 12828 493 12698 19752 25772 25772 1 LSALLQETK Unmodified 1001.5757 0.57571092 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 7 0 1 62.599 62.599 2 0.017212 18496 TMT1-6 79.148 49.999 146.2 219.94 128.8 147.78 161.24 193.67 138 218 138 145 167 186 1 1 1 1 1 1 12479 12829 237 12699 19753 25773 25773 1 LSALPQGAFQGLGELQVLALHSNGLTALPDGLLR Unmodified 3468.9093 0.90928809 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 93.161 93.161 4 9.5692E-07 28540 TMT1-8 53.553 42.136 46.502 64.95 64.266 67.678 33.503 60.872 44 65 66 66 37 58 2 2 2 2 2 2 15155 12830 1067 12700 19754 25774;25775 25774 2 LSAPGCWAACTNFSR Unmodified 1696.745 0.74499465 1589 Q04941;Q04941-2 PLP2 Proteolipid protein 2 yes no 0 0 0 0 0 9 0 1 58.951 58.951 3 6.1869E-08 15310 TMT1-8 106.33 90.742 77.354 102.02 77.489 57.463 69.796 114.2 73 102 80 58 73 109 1 1 1 1 1 1 18453 12831 1589 12701 19755 25776 25776 1 LSASSLTMESFAFLWAGGR Unmodified 2029.9931 0.99314707 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 2 91.532 91.532 2;3 1.445E-31 27954 TMT1-8 153.81 122.98 31.746 40.815 39.997 39.415 44.042 65.901 30 41 41 39 46 63 2 2 2 2 2 2 27122 12832 1545 12702 19756;19757 25777;25778 25777 2 LSAYSLGGFAAEWLSQEYFHR Unmodified 2431.1597 0.15969512 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 87.871 87.871 3 0.0015174 26618 TMT1-8 47.822 34.893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12833 1999 12703 19758 25779 25779 1 LSCAYSGFSSPR Unmodified 1330.5976 0.59758535 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 7.5 0.5 1 1 49.232 49.232 2 1.8501E-33 13246 TMT1-6 209.21 181.04 138.81 143.08 173.92 113.63 148.59 181.24 131 146 174 116 153 174 2 2 2 2 2 2 26953 12834 3046 12704 19759;19760 25780;25781 25780 2 LSDDNTIGKEEIQQR Unmodified 1744.8592 0.85915601 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 4 0 1 44.289 44.289 3 0.00011309 11992 TMT1-3 85.163 52.168 99.205 161.18 141.92 107.75 155.94 188.5 94 160 145 109 160 181 1 1 1 1 1 1 17347 12835 1737 12705 19761 25782 25782 1 LSDESLDSFLIELEK Unmodified 1736.872 0.8720121 2001 Q658Y4 FAM91A1 Protein FAM91A1 yes yes 0 0 0 0 0 5 0 1 88.66 88.66 3 0.00072444 29165 TMT1-4 71.692 39.086 23.458 29.274 0 24.046 0 38.376 22 29 0 22 0 36 1 1 0 1 0 1 4666.5 12836 2001 12706 19762 25783 25783 1 LSDETLIDIMTR Unmodified 1405.7123 0.71228076 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5.33 0.471 2 1 76.396 76.396 2;3 3.5825E-09 24503 TMT1-5 152.69 109.52 100.11 207.05 130.82 125.1 139.95 174.03 95 203 138 124 145 167 3 3 3 3 3 3 67083 12837 787 12707 19763;19764;19765 25784;25785;25786 25786 3 LSDFGLCTGLK Unmodified 1209.6064 0.60635913 1836 Q15208;Q9Y2H1-2;Q9Y2H1 STK38;STK38L Serine/threonine-protein kinase 38;Serine/threonine-protein kinase 38-like yes no 0 0 0 0 0 8 0 1 66.926 66.926 3 0.0024837 20276 TMT1-7 76.655 42.769 92.364 84.768 94 48.406 92.2 113.56 87 87 94 51 94 109 1 1 1 1 1 1 9550.1 12838 1836 12708 19766 25787 25787 1 LSDFNDITNMLLLK Unmodified 1635.8542 0.85419397 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 1 90.881 90.881 3 8.3294E-06 29342 TMT1-7 99.991 79.038 23.195 28.542 44.857 20.677 36.983 22.397 22 29 44 22 37 22 1 1 1 1 1 1 4398 12839 1507 12709 19767 25788 25788 1 LSDFNIIDTLGVGGFGR Unmodified 1779.9155 0.91554867 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 8 0 1 87.167 87.167 2 2.74E-13 28010 TMT1-7 124.07 69.004 15.744 36.778 27.771 29.659 20.352 37.795 15 36 29 29 22 36 1 1 1 1 1 1 7370.2 12840 1742 12710 19768 25789 25789 1 LSDFWQQSK Unmodified 1137.5455 0.54547343 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 8 0 1 62.487 62.487 2 0.0018352 18494 TMT1-7 112.11 68.615 146.7 150.11 102.96 117.44 170.92 165.68 138 152 109 116 174 160 1 1 1 1 1 1 24170 12841 2263 12711 19769 25790 25790 1 LSDGFNGADLR Unmodified 1163.5571 0.55710075 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 4 0 1 52.035 52.035 2 0.0014109 15079 TMT1-3 68.536 31.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12842 1437 12712 19770 25791 25791 1 LSDGIRK Unmodified 787.4552 0.45520186 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 7 0 1 36.52 36.52 3 0.037559 8145 TMT1-6 64.836 7.2771 201.43 278.24 173.54 151.65 220.37 294.32 190 277 183 152 227 282 1 1 1 1 1 1 27481 12843 1053 12713 19771 25792 25792 1 LSDGVAVLK Unmodified 900.52803 0.52803245 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 55.723 55.723 2 0.00041073 16413 TMT1-5 138.54 68.277 1218.8 1312.1 1437.1 1321.7 1590.2 1544 1150 1333 1461 1315 1629 1491 4 4 4 4 4 4 174780 12844 638 12714 19772;19773 25793;25794;25795;25796 25794 4 LSDIPEGK Unmodified 857.44945 0.44944778 1147 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 0 0 5 0 1 47.979 47.979 2 0.0081623 13208 TMT1-4 68.735 27.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12845 1147 12715 19774 25797 25797 1 LSDLDSETR Unmodified 1034.488 0.48801813 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 2 0 1 43.997 43.997 2 0.0008423 12512 TMT1-1 128 67.518 170.05 187.7 115.4 124.94 139.15 197.5 160 189 123 123 145 189 2 2 2 2 2 2 20939 12846 2956 12716 19775 25798;25799 25798 2 LSDLLAPISEQIK Unmodified 1425.8079 0.80789571 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 6.57 2.38 1 4 1 1 78.759 78.759 2;3;4 1.0504E-36 24847 TMT1-6 211.86 160.59 1413.3 2218.2 1694.5 1489.8 2008.4 2178.1 1337 2201 1757 1490 2057 2097 8 8 8 8 8 8 1028300 12847 1555;1556 12717 19776;19777;19778;19779;19780;19781;19782 25800;25801;25802;25803;25804;25805;25806;25807;25808 25804 9 LSDLLAPISEQIKEVITFR Unmodified 2171.2202 0.22017012 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 9 0 2 96.15 96.15 3;4 0.0005827 29591 TMT1-8 57.173 37.067 54.14 57.234 49.479 44.799 18.3 77.296 51 58 51 44 22 73 2 2 2 2 2 2 6679 12848 1555;1556 12718 19783;19784 25809;25810 25809 2 LSDLLDWK Unmodified 988.52295 0.52294707 694 P13807-2;P13807 GYS1 Glycogen [starch] synthase, muscle yes no 0 0 0 0 0 7 0 1 76.99 76.99 2 0.015049 24132 TMT1-6 93.162 29.683 77.677 55.427 62.62 89.64 91.367 82.673 73 58 65 87 94 80 1 1 1 1 1 1 10451 12849 694 12719 19785 25811 25811 1 LSDLQNAAAGSFASAFAALVLCPTELVK Unmodified 2863.479 0.47898035 3045 Q9Y619 SLC25A15 Mitochondrial ornithine transporter 1 yes yes 0 0 0 0 0 9 0 1 106.69 106.69 4 3.8761E-09 33297 TMT1-8 66.36 50.594 23.433 13.014 18.08 11.168 10.747 7.1553 22 14 18 11 11 7 2 2 2 1 1 1 3116.8 12850 3045 12720 19786 25812;25813 25812 2 LSDLVNTAILIALNK Unmodified 1596.9451 0.94505789 2266 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 0 0 9 0 1 104.41 104.41 3 2.1943E-05 32531 TMT1-8 72.417 49.884 23.342 37.586 12.464 6.9862 22.442 7.2602 22 37 14 7 22 7 2 2 2 1 2 1 1806.2 12851 2266 12721 19787 25814;25815 25814 2 LSDQCTGLQGFLVFHSFGGGTGSGFTSLLMER Unmodified 3405.6122 0.61219615 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 9 0 1 85.608 85.608 4 2.1264E-10 25732 TMT1-8 62.594 51.283 31.611 74.977 33.713 37.332 58.446 45.236 30 73 37 37 59 44 2 2 2 2 2 2 16854 12852 1492 12722 19788 25816;25817 25816 2 LSDQDLDQALSDEELNAFQK Unmodified 2278.0601 0.060100239 2145 Q8IXI1;Q8IXI1-2 RHOT2 Mitochondrial Rho GTPase 2 yes no 0 0 0 0 0 4 0 1 75.515 75.515 3 2.4229E-13 24293 TMT1-3 83.776 66.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12853 2145 12723 19789 25818 25818 1 LSDQFHDILIR Unmodified 1355.7197 0.7197494 264 O75340-2;O75340 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 0 7 1 1 1 58.49 58.49 3 0.00074262 17465 TMT1-5 89.382 59.608 368.37 537.87 390.95 343.29 383.66 522.05 348 535 407 342 399 500 3 3 3 3 3 3 30864 12854 264 12724 19790;19791 25819;25820;25821 25820 3 LSEADIR Unmodified 802.41848 0.418482 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 3 0 1 40.11 40.11 2 0.035911 11310 TMT1-2 88.029 16.079 122.76 150.79 159.4 90.998 119.29 151.17 116 152 160 94 123 145 1 1 1 1 1 1 53786 12855 800 12725 19792 25822 25822 1 LSEAEFEVLK Unmodified 1163.6074 0.60740498 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 65.42 65.42 2 3.2758E-06 20010 TMT1-4 155.84 81.589 304.15 257.62 420.09 292.62 312.17 417.49 287 268 416 296 325 400 2 2 2 2 2 2 63781 12856 471 12726 19793 25823;25824 25823 2 LSECEEQAK Unmodified 1092.4757 0.47573888 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 3 0 1 37.489 37.489 3 0.0023995 10301 TMT1-2 85.666 61.412 138.36 203.34 198.61 182.73 173.89 205.04 131 203 203 181 181 197 1 1 1 1 1 1 17039 12857 2071 12727 19794 25825 25825 1 LSEDYGVLK Unmodified 1022.5284 0.52842638 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 0 5 0 1 55.828 55.828 2 0.00015581 16303 TMT1-4 148.05 75.508 658.81 908.28 674.91 675.29 544.44 787.16 622 906 705 664 576 753 1 1 1 1 1 1 65369 12858 989 12728 19795 25826 25826 1 LSEEEILENPDLFLTSEATDYGR Unmodified 2640.2443 0.24427219 1768 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 0 3 0 1 82.555 82.555 3 2.6371E-06 27801 TMT1-2 70.345 70.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2093.5 12859 1768 12729 19796 25827 25827 1 LSEEELLDKLEIFFGK Unmodified 1909.0084 0.0084460064 1510 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 0 0 0 0 1 8 0 1 93.577 93.577 4 1.6161E-06 30377 TMT1-7 94.487 76.998 15.599 67.675 25.927 29.459 36.836 14.939 15 65 29 29 37 15 1 1 1 1 1 1 1537.1 12860 1510 12730 19797 25828 25828 1 LSEEELPAILK Unmodified 1240.6915 0.69146896 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 5 0 1 68.033 68.033 3 0.00046299 21017 TMT1-4 93.096 51.112 37.962 65.659 56.319 51.777 32.38 84.356 36 65 58 51 36 80 1 1 1 1 1 1 14412 12861 3003 12731 19798 25829 25829 1 LSEEFLTAHPR Unmodified 1298.6619 0.66190017 1876 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 0 5 0 1 47.937 47.937 3 0.016046 13170 TMT1-4 55.754 43.528 107.91 105.89 167.96 130.96 117.45 151.22 102 109 167 131 123 145 1 1 1 1 1 1 5225.8 12862 1876 12732 19799 25830 25830 1 LSEELSGGR Unmodified 946.47197 0.47197413 1379 P61158;Q9P1U1-2;Q9P1U1 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 0 0 0 0 0 2.5 0.5 1 1 41.764 41.764 2 3.55E-20 11990 TMT1-2 199.8 90.88 1679.1 2148.3 1813.6 1551.2 2029.6 2238.2 1585 2154 1867 1553 2082 2154 4 4 4 4 4 4 392360 12863 1379 12733 19800;19801 25831;25832;25833;25834 25834 4 LSEFGLIQEK Unmodified 1162.6234 0.6233894 2659 Q9H845 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 0 0 0 0 0 6 0 1 64.597 64.597 3 0.018771 19909 TMT1-5 56.094 21.207 37.899 57.929 73.432 42.359 72.103 67.233 36 58 73 44 73 65 1 1 1 1 1 1 4398.6 12864 2659 12734 19802 25835 25835 1 LSEGASYLDHTFPAEK Unmodified 1763.8366 0.83662965 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 5 0 1 56.875 56.875 3 4.0841E-11 16684 TMT1-4 101.39 82.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12865 666 12735 19803 25836 25836 1 LSEGFSIHTR Unmodified 1145.5829 0.58292157 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 7.33 1.25 1 1 1 42.853 42.853 3 0.00089171 11198 TMT1-5 92.445 66.061 238.91 341.47 313.63 220.74 287.24 417.14 226 341 319 224 298 399 3 3 3 3 3 3 66877 12866 813 12736 19804;19805;19806 25837;25838;25839 25837 3 LSEGVTISYK Unmodified 1095.5812 0.58119023 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 6.5 0.5 1 1 54.041 54.041 2 1.3473E-05 15117 TMT1-6 152.97 57.471 344.11 940.78 700.14 610.88 692.69 698.72 329 917 726 609 712 674 4 4 4 4 4 4 80485 12867 500 12737 19807;19808 25840;25841;25842;25843 25842 4 LSEHATAPTR Unmodified 1081.5516 0.55162144 1001 P33316-2;P33316 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 0 7 0 1 26.947 26.947 3 0.0093237 4606 TMT1-6 64.82 22.484 10.567 15.001 14.737 12.115 6.5156 7.2761 10 15 15 12 7 7 1 1 1 1 1 1 466.36 12868 1001 12738 19809 25844 25844 1 LSEIDVSSEGVK Unmodified 1261.6402 0.64016167 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 4.5 0.5 1 1 55.466 55.466 3 8.6943E-09 16419 TMT1-3 131.12 87.623 331.12 458.02 225.96 272.65 361.85 368.1 312 455 247 268 370 355 3 3 3 3 3 3 57993 12869 2376 12739 19810;19811 25845;25846;25847 25845 3 LSEISGIPLDDIEFAK Unmodified 1745.9087 0.90873196 2430 Q96K76-4;Q96K76;Q96K76-2;Q96K76-3 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 6 0 1 80.068 80.068 3 0.0011322 25977 TMT1-5 65.225 1.6113 85.082 85.919 54.544 58.984 61.607 106.97 80 87 58 58 65 102 1 1 1 1 1 1 9935.1 12870 2430 12740 19812 25848 25848 1 LSEIVTLAK Unmodified 972.58555 0.58554733 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 65.885 65.885 2 0.0010405 19813 TMT1-7 125.16 39.896 207.46 291.77 231.37 219.13 284.79 277.56 196 291 240 218 291 268 2 2 2 2 2 2 27029 12871 2831 12741 19813;19814 25849;25850 25850 2 LSELDDR Unmodified 846.40831 0.40831125 1468 Q15836;P63027;P23763-2;P23763-3;P23763 VAMP3;VAMP2;VAMP1 Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 1 yes no 0 0 0 0 0 2 0 1 42.716 42.716 2 0.026964 11984 TMT1-1 92.187 17.67 130.27 174.02 139.21 147.73 130.44 207.35 123 174 145 145 138 198 1 1 1 1 1 1 27288 12872 1468 12742 19815 25851 25851 1 LSELDDRADALQAGASQFETSAAK Unmodified 2493.1983 0.19832505 1468 Q15836;P63027 VAMP3;VAMP2 Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2 yes no 0 0 0 0 1 5 0 2 62.872 62.872 3;4 2.9689E-10 19050 TMT1-4 90.534 74.028 130.51 143.38 125.82 149.51 78.353 168.32 123 145 131 145 87 160 1 1 1 1 1 1 12664 12873 1468 12743 19816;19817 25852;25853 25852 2 LSELLPEEVEAEVK Unmodified 1583.8294 0.82941901 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 4 0 1 73.875 73.875 3 0.0007651 23600 TMT1-3 73.887 51.558 54.18 57.346 42.657 27.776 73.287 52.275 51 58 44 29 73 51 1 1 1 1 1 1 11675 12874 2977 12744 19818 25854 25854 1 LSENNIQTIFAVTEEFQPVYK Unmodified 2469.2428 0.24275605 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 6.33 0.471 2 1 88.846 88.846 3;4 1.3832E-10 28729 TMT1-6 98.269 81.193 332.35 353.67 288.83 240.52 301.89 420.98 313 358 298 241 313 403 5 5 5 5 5 5 79865 12875 500 12745 19819;19820;19821 25855;25856;25857;25858;25859 25858 5 LSEQELQFR Unmodified 1148.5826 0.58258722 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 4 0 1 52.158 52.158 2 0.00025544 15102 TMT1-3 143.37 66.056 169.48 229.29 175.86 120.48 185.06 206.85 160 229 181 123 189 199 1 1 1 1 1 1 42526 12876 1913 12746 19822 25860 25860 1 LSEVITDTGVVCHK Unmodified 1556.7868 0.78684269 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 6 0 1 55.592 55.592 3 0.030541 16354 TMT1-5 44.925 18.384 68.619 124.85 83.405 64.915 61.627 98.445 65 123 87 65 65 94 1 1 1 1 1 1 30902 12877 1786 12747 19823 25861 25861 1 LSEVLQAVTDHDIPQQLVER Unmodified 2289.1965 0.19647456 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 5 0 1 76.131 76.131 3 0.00048674 24253 TMT1-4 46.569 32.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12878 2339 12748 19824 25862 25862 1 LSFDKDAMVAR Unmodified 1251.6282 0.6281572 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 7 0 1 52.218 52.218 3 0.0081142 14345 TMT1-6 69.786 44.4 153.57 219.04 153.05 138.12 190.88 287.7 145 218 160 138 198 275 1 1 1 1 1 1 59653 12879 1053 12749 19825 25863 25863 1 LSFEAVR Unmodified 820.4443 0.44430282 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 6 0 1 49.264 49.264 2 1.7653E-07 13856 TMT1-5 138.24 61.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12880 1724 12750 19826 25864 25864 1 LSFEDFVTMTASR Unmodified 1502.7075 0.70752973 2848 Q9UBV8 PEF1 Peflin yes yes 0 0 0 0 0 8 0 1 77.339 77.339 3 0.00033294 24349 TMT1-7 65.495 53.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12881 2848 12751 19827 25865 25865 1 LSFLYLITGNLEK Unmodified 1509.8443 0.84428121 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 92.282 92.282 3 9.7026E-10 28289 TMT1-8 117.93 76.744 68.738 78.772 102.48 63.043 100.71 89.868 65 80 102 65 102 87 2 2 2 2 2 2 14877 12882 1287 12752 19828 25866;25867 25867 2 LSFMPFFLK Unmodified 1128.6042 0.60417428 646 P11182 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 9 0 1 86.872 86.872 2 0.042455 26245 TMT1-8 61.582 27.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12883 646 12753 19829 25868 25868 1 LSFQEFLK Unmodified 1010.5437 0.54368251 1648 Q12841;Q12841-2 FSTL1 Follistatin-related protein 1 yes no 0 0 0 0 0 8 0 1 71.232 71.232 2 0.0056167 21973 TMT1-7 116.37 16.569 130.01 158.18 196.91 112.54 133.45 166.75 123 160 196 116 138 160 1 1 1 1 1 1 15047 12884 1648 12754 19830 25869 25869 1 LSFQHDPETSVLVLR Unmodified 1739.9206 0.92063405 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 6.5 0.5 1 1 59.449 59.449 3 1.2295E-07 17810 TMT1-5 106.42 79.712 253.98 249.75 202.16 197.48 249.97 193.27 239 254 210 196 254 188 2 2 2 2 2 2 47805 12885 1792 12755 19831;19832 25870;25871 25870 2 LSFYETGEIPR Unmodified 1310.6507 0.65066678 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 5 0 1 59.394 59.394 2 0.00039455 17676 TMT1-4 79.201 34.631 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12886 81 12756 19833 25872 25872 1 LSGAADTQALLR Unmodified 1214.6619 0.66190017 469 P04234 CD3D T-cell surface glycoprotein CD3 delta chain yes yes 0 0 0 0 0 6 0 1 51.994 51.994 2 0.00028469 14937 TMT1-5 79.07 67.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12887 469 12757 19834 25873 25873 1 LSGAQADLHIEDGDSIR Unmodified 1795.8701 0.87005504 361 O95571 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial yes yes 0 0 0 0 0 2.5 0.5 1 1 49.846 49.846 3 4.9993E-30 15165 TMT1-2 168.55 157.89 69.734 117.34 82.815 88.16 106.08 113.17 66 116 87 87 109 109 2 2 2 2 2 2 35013 12888 361 12758 19835;19836 25874;25875;25876 25875 3 LSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSAR Unmodified 3969.9625 0.96246265 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 9 0 1 87.684 87.684 5 0.036123 26593 TMT1-8 23.741 14.279 38.365 27.926 20.546 31.174 20.795 22.859 36 29 22 30 22 22 1 1 1 1 1 1 8291.6 12889 1250 12759 19837 25877 25877 1 LSGEAYGFVAR Unmodified 1168.5877 0.58767259 471 P04275;P04275-2 VWF von Willebrand factor;von Willebrand antigen 2 yes no 0 0 0 0 0 6 0 1 53.32 53.32 2 9.7447E-07 15450 TMT1-5 143.39 133.44 183.82 292.22 236.17 234.89 128.93 348.1 174 290 245 230 145 330 1 1 1 1 1 1 44606 12890 471 12760 19838 25878 25878 1 LSGGDDDAAGQFFPEAAQVAYQMWELSAVAR Unmodified 3299.5193 0.51934162 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 7.5 0.5 1 1 103.42 103.42 4 3.0244E-09 33385 TMT1-6 74.516 71.462 11.684 25.546 15.933 19.517 15.949 27.261 11 25 17 19 17 26 2 3 3 3 3 3 8860.4 12891 555 12761 19839;19840 25879;25880;25881 25880 3 LSGIEER Unmodified 802.41848 0.418482 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 38.733 38.733 2 0.010238 10789 TMT1-2 108.92 26.539 107.66 182.9 145.32 171.27 138.08 166.62 102 181 152 167 145 160 1 1 1 1 1 1 20031 12892 1546 12762 19841 25882 25882 1 LSGPSLK Unmodified 700.41194 0.41194006 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 45.649 45.649 2 0.040882 11864 TMT1-7 85.813 12.176 688.77 1075.8 907.33 620.94 895.74 925.31 652 1069 927 633 914 892 1 1 1 1 1 1 62703 12893 1632 12763 19842 25883 25883 1 LSGSNPYTTVTPQIINSK Unmodified 1919 6.5851E-06 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 7.5 0.5 1 1 61.835 61.835 3 8.0576E-15 18159 TMT1-7 127.44 103.96 314.4 440.11 346.24 221.87 297.94 439.22 297 439 355 227 309 420 2 2 2 2 2 2 155130 12894 195 12764 19843;19844 25884;25885 25885 2 LSGTGSAGATIR Unmodified 1089.5778 0.57783619 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 6.5 0.5 1 1 37.063 37.063 2 2.1579E-08 8956 TMT1-5 141.08 71.456 161.97 178.02 218.05 142.04 183.13 203.71 153 181 218 145 188 196 2 2 2 2 2 2 29914 12895 1043 12765 19845;19846 25886;25887 25886 2 LSGVMVPAPIQDLEALR Unmodified 1807.9866 0.98660513 2834 Q9UBB4-2;Q9UBB4 ATXN10 Ataxin-10 yes no 0 0 0 0 0 7 0 1 80.818 80.818 3 0.0003428 25606 TMT1-6 70.235 51.177 23.419 21.61 13.114 38.191 19.959 37.806 22 22 15 36 22 36 1 1 1 1 1 1 4531.8 12896 2834 12766 19847 25888 25888 1 LSGWEEEEESWLYSSPK Unmodified 2054.9109 0.91091681 2824 Q9P270 SLAIN2 SLAIN motif-containing protein 2 yes yes 0 0 0 0 0 5 0 1 75.261 75.261 4 9.4898E-06 23902 TMT1-4 83.966 69.038 38.07 50.849 50.698 27.863 43.176 45.672 36 51 51 29 44 44 1 1 1 1 1 1 4263.5 12897 2824 12767 19848 25889 25889 1 LSHANSAVVLSAVK Unmodified 1394.7882 0.78816332 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 8.5 0.5 1 1 48.226 48.226 3 7.0783E-06 11089 TMT1-8 95.854 71.867 61.143 79.053 116.28 93.791 107.43 66.224 58 80 116 94 109 65 1 1 1 1 1 1 8006.7 12898 1467;1637 12768 19849;19850 25890;25891 25891 2 LSHEALR Unmodified 824.45045 0.45045083 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 5 0 1 28.164 28.164 3 0.0040219 5380 TMT1-4 97.033 15.249 30.495 58.741 54.692 98.46 54.331 52.816 29 58 58 94 58 51 1 1 1 1 1 1 6694.8 12899 1219 12769 19851 25892 25892 1 LSHEGPGSELPAGALYR Unmodified 1752.8795 0.87949752 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 5 0 1 48.013 48.013 3 1.5926E-05 13234 TMT1-4 81.409 76.255 77.341 85.793 93.324 63.905 83.902 121.26 73 87 94 65 87 116 1 1 1 1 1 1 13682 12900 1762 12770 19852 25893 25893 1 LSHETVTIELK Unmodified 1268.6976 0.69761697 1432 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 0 0 0 0 0 6 0 1 49.833 49.833 3 0.012332 14069 TMT1-5 59.57 52.688 84.568 139.53 95.548 135.1 127.21 105.1 80 138 102 131 131 102 1 1 1 1 1 1 6708.1 12901 1432 12771 19853 25894 25894 1 LSHIAEDVGR Unmodified 1095.5673 0.5672715 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 4 0 1 39.498 39.498 3 0.00074869 10100 TMT1-3 94.804 69.245 108.37 114.73 83.113 80.612 99.645 97.361 102 116 87 80 102 94 1 1 1 1 1 1 29367 12902 1530 12772 19854 25895 25895 1 LSHQITSR Unmodified 940.50903 0.50902834 260 O75298-3;O75298;O75298-2 RTN2 Reticulon-2 yes no 0 0 0 0 0 7.33 1.25 1 1 1 26.967 26.967 3 0.00018781 5023 TMT1-5 112.41 61.345 38.241 34.057 36.168 36.59 32.027 23.604 36 35 37 36 33 23 2 2 2 2 2 2 2596 12903 260 12773 19855;19856;19857 25896;25897;25898 25896 3 LSIDAIAAQLLR Unmodified 1282.7609 0.76088593 2823 Q9P260;Q9P260-2 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 yes no 0 0 0 0 0 9 0 1 84.709 84.709 2 0.0054934 25415 TMT1-8 72.096 32.386 53.989 80.56 55.019 59.074 55.336 76.239 51 80 58 58 58 73 1 1 1 1 1 1 5115.9 12904 2823 12774 19858 25899 25899 1 LSIGDLDFSDLGEDEDQDMLNVESVEAGK Unmodified 3139.4027 0.40269968 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 89.39 89.39 4 0.00012033 29601 TMT1-3 51.119 34.587 15.983 14.777 6.2947 7.0065 14.32 30.505 15 15 7 7 15 29 1 1 1 1 1 1 1825.9 12905 3042 12775 19859 25900 25900 1 LSILYPATTGR Unmodified 1190.6659 0.66592292 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 9 0 2 60.621 60.621 2;3 4.1998E-08 16047 TMT1-8 140.17 101.85 214.67 289.33 284.3 199.16 365.35 425.57 203 290 288 204 372 409 2 2 2 2 2 2 298950 12906 945 12776 19860;19861 25901;25902 25902 2 LSIPTYGLQCTR Unmodified 1407.718 0.71803484 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 8 0 1 59.875 59.875 2 1.5837E-10 17484 TMT1-7 163.9 103.46 54.099 57.121 56.423 59.108 49.068 45.504 51 58 58 58 51 44 1 1 1 1 1 1 9273.3 12907 1176 12777 19862 25903 25903 1 LSIQSSPK Unmodified 858.48108 0.48108226 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 6.5 3.2 1 2 1 43.853 43.853 2;3 0.0011492 10541 TMT 1-phospho 73.985 51.245 956.71 1184.3 1228 1042.2 901.33 1326 904 1193 1248 1036 951 1268 4 4 4 4 4 4 488350 12908 393 12778 19863;19864;19865;19866 25904;25905;25906;25907;25908 25904 5 LSITGTYDLK Unmodified 1109.5968 0.5968403 407 P01009;P01009-2 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 7 0 1 60.632 60.632 2 4.9723E-14 17769 TMT1-6 182.39 91.322 308.83 517.79 495.33 390.06 472.08 473.69 293 514 504 392 484 457 2 2 2 2 2 2 64151 12909 407 12779 19867 25909;25910 25910 2 LSIYNALK Unmodified 920.53312 0.53311783 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 61.337 61.337 2 0.00031207 16252 TMT1-8 128.61 64.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12910 1833 12780 19868 25911 25911 1 LSKDPNIVIAK Unmodified 1196.7129 0.71287311 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 5.67 3.3 1 2 51.682 51.682 3;4 0.00067979 14173 TMT1-7 95.401 61.619 5811 8724.7 6733.6 5704.9 6585.4 7785.8 5494 8674 6969 5700 6802 7480 4 4 4 4 4 4 572240 12911 955 12781 19869;19870;19871 25912;25913;25914;25915 25914 4 LSKEDIER Unmodified 988.51892 0.51892433 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 1 4.5 0.5 1 1 39 39 3 0.0056899 9689 TMT1-4 91.584 17.599 4094.5 5933.7 4183.7 3527.8 4140.1 5636.1 3867 5902 4360 3527 4298 5398 3 3 3 3 3 3 393490 12912 641 12782 19872;19873 25916;25917;25918 25918 3 LSKEEIER Unmodified 1002.5346 0.53457439 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 1 5 0 1 37.967 37.967 3 0.0075126 9199 TMT1-4 87.806 34.313 493.74 669.29 488.55 511.46 489.32 601.12 466 668 512 503 510 577 1 1 1 1 1 1 117750 12913 618 12783 19874 25919 25919 1 LSKEETVLATVQALQTASHLSQQADLR Unmodified 2936.5567 0.5567134 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 1 9 0 1 75.522 75.522 4 4.111E-08 21821 TMT1-8 61.45 54.021 46.616 50.158 57.582 43.305 72.06 67.234 44 51 58 44 73 65 1 1 1 1 1 1 12658 12914 479 12784 19875 25920 25920 1 LSLAQEDLISNR Unmodified 1357.7201 0.72014333 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 0 5 0 1 57.674 57.674 2 0.0083753 17001 TMT1-4 55.578 24.206 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12915 1825 12785 19876 25921 25921 1 LSLDELHR Unmodified 981.52434 0.52434406 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 5 0 1 45.885 45.885 3 0.00010872 12360 TMT1-4 150.24 96.564 176.7 257.12 200.19 119.05 183.93 211.15 167 256 205 123 188 203 1 1 1 1 1 1 14932 12916 481 12786 19877 25922 25922 1 LSLDGQNIYNACCTLR Unmodified 1896.8822 0.88221641 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 6 0 1 60.944 60.944 3 0.0018311 18464 TMT1-5 46.324 34.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12917 901 12787 19878 25923 25923 1 LSLDYGK Unmodified 794.41742 0.41741937 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 0 7 0 1 52.859 52.859 2 0.037495 14597 TMT1-6 87.323 34.16 290.55 485.3 348.67 254.85 396.43 512.09 275 480 361 259 407 491 1 1 1 1 1 1 71038 12918 2783 12788 19879 25924 25924 1 LSLDYGKK Unmodified 922.51238 0.51238239 2783 Q9NY65;Q9NY65-2 TUBA8 Tubulin alpha-8 chain yes no 0 0 0 0 1 8 0 1 47.264 47.264 3 0.0091834 12532 TMT1-7 82.287 32.326 2874.8 3419.3 3194.8 2873.3 2614.4 4245.9 2713 3446 3274 2848 2765 4053 1 1 1 1 1 1 139860 12919 2783 12789 19880 25925 25925 1 LSLEEFIR Unmodified 1005.5495 0.54949617 1051;1394 P37235;P84074;P61601 HPCAL1;HPCA;NCALD Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta no no 0 0 0 0 0 6 0 1 69.071 69.071 2 0.0043756 21704 TMT1-5 125.5 62.191 145.41 274.94 215.14 103.06 173.06 244.51 138 271 219 109 178 234 1 1 1 1 1 1 41822 12920 1051;1394 12790 19881 25926 25926 1 LSLEGDHSTPPSAYGSVK Unmodified 1843.8952 0.89520716 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 6.5 0.5 1 1 49.015 49.015 3 3.467E-10 13717 TMT1-5 107.03 89.108 207.46 291.77 231.4 194.19 332.02 245.3 196 291 239 196 334 239 2 2 2 2 2 2 44542 12921 534 12791 19882;19883 25927;25928 25927 2 LSLGLSR Unmodified 744.44939 0.4493882 2718 Q9NR12;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 9 0 1 49.882 49.882 2 0.036655 11696 TMT1-8 85.813 22.511 170.18 140.58 133.1 155.43 147.2 135.45 160 145 138 152 152 131 1 1 1 1 1 1 35647 12922 2718 12792 19884 25929 25929 1 LSLGTYASLHGR Unmodified 1273.6779 0.67788459 2861 Q9UHB6-3;Q9UHB6-2;Q9UHB6-5;Q9UHB6;Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 0 8 0 1 47.274 47.274 3 0.0061883 12551 TMT1-7 63.662 41.965 68.811 94.084 77.278 73.849 70.912 59.805 65 94 80 73 73 58 1 1 1 1 1 1 5387.4 12923 2861 12793 19885 25930 25930 1 LSLLEVGCGTGANFK Unmodified 1564.7919 0.79192806 2660 Q9H8H3 METTL7A Methyltransferase-like protein 7A yes yes 0 0 0 0 0 8 0 1 69.577 69.577 2 5.3879E-10 21308 TMT1-7 122.34 90.972 38.102 74.683 25.092 36.201 87.814 44.398 36 73 29 36 87 44 1 1 1 1 1 1 11382 12924 2660 12794 19886 25931 25931 1 LSLLNMTFMK Oxidation (M) 1212.6247 0.62465173 2758 Q9NVF7-2;Q9NVF7 FBXO28 F-box only protein 28 yes no 0 0 1 0 0 9 0 1 62.27 62.27 3 0.036879 16573 TMT1-8 52.278 17.51 84.88 101.55 75.323 105.88 59.194 114.5 80 102 80 102 65 109 1 1 1 1 1 1 36671 12925 2758 12795 19887 25932 25932 314 1 LSLMPWFHGK Unmodified 1214.627 0.62703499 1083 P41240;P42679-3;P42679;P42679-2 CSK;MATK Tyrosine-protein kinase CSK;Megakaryocyte-associated tyrosine-protein kinase yes no 0 0 0 0 0 9 0 1 66.867 66.867 3 0.00018515 18418 TMT1-8 105.98 70.031 114.77 247.11 158.06 162.2 173.22 251.96 109 242 167 160 181 241 1 1 1 1 1 1 32490 12926 1083 12796 19888 25933 25933 1 LSLNAELQLDR Unmodified 1270.6881 0.68811492 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5.75 0.829 2 1 1 60.87 60.87 2;3 8.5805E-42 18322 TMT1-4 218.07 186.2 763.49 765.94 874.94 639.72 755.37 997.54 720 782 881 646 783 956 4 4 4 4 4 4 265610 12927 565 12797 19889;19890;19891;19892 25934;25935;25936;25937;25938 25935 5 LSLPDFK Unmodified 818.4538 0.45380487 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 8 0 1 64.338 64.338 2 0.0291 19237 TMT1-7 91.065 21.721 99.89 91.85 85.587 56.847 76.897 121.46 94 94 87 58 80 116 1 1 1 1 1 1 6603.7 12928 463 12798 19893 25939 25939 1 LSLPDNDLTTLPASIANLINLR Unmodified 2363.306 0.30602501 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 9 0 2 97.121 97.121 3;4 3.7821E-26 29914 TMT1-8 129.77 106.48 40.189 53.867 52.589 53.975 43.593 59.518 38 54 54 53 46 57 3 3 3 3 3 3 20434 12929 2448 12799 19894;19895 25940;25941;25942 25940 3 LSLPEIPSYGFLVPR Unmodified 1686.9345 0.9344932 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 9 0 1 83.139 83.139 3 1.7617E-05 24756 TMT1-8 77.776 56.403 47.59 81.107 48.102 44.304 48.979 67.892 45 80 51 44 51 65 2 2 2 2 2 2 5424.2 12930 2707 12800 19896 25943;25944 25943 2 LSLQDVPELVDAK Unmodified 1425.7715 0.7715102 2185 Q8N5W9 FAM101B Filamin-interacting protein FAM101B yes yes 0 0 0 0 0 5 0 1 73.206 73.206 3 0.0031759 23071 TMT1-4 65.704 41.429 46.491 96.218 39.666 43.437 63.677 67.473 44 94 44 43 65 65 1 1 1 1 1 1 6899.3 12931 2185 12801 19897 25945 25945 1 LSLQNCCLTGAGCGVLSSTLR Unmodified 2266.0868 0.086806232 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 9 0 2 66.555 66.555 2;3 3.0622E-19 18307 TMT1-8 112.53 81.671 61.54 80.156 48.727 67.634 85.05 82.853 58 80 51 66 87 80 2 2 1 2 2 2 25335 12932 681 12802 19898;19899 25946;25947 25946 2 LSLQPSSGEAAKPLGK Unmodified 1581.8726 0.87262123 1743 Q14005-3;Q14005-2;Q14005;Q14005-4 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 1 8 0 1 50.853 50.853 3 0.00075311 13923 TMT1-7 72.433 50.975 192.28 220.95 136.83 130.89 219.88 214.39 181 222 145 131 223 207 1 1 1 1 1 1 19128 12933 1743 12803 19900 25948 25948 1 LSLTDPLVAER Unmodified 1212.6714 0.67140222 678 P13224;P13224-2 GP1BB Platelet glycoprotein Ib beta chain yes no 0 0 0 0 0 5.5 0.5 1 1 62.634 62.634 2 1.4066E-11 19026 TMT1-4 170.85 122.69 558.52 744.09 717.25 516 394.62 824.48 528 746 728 518 427 784 3 3 3 3 3 3 271780 12934 678 12804 19901;19902 25949;25950;25951 25950 3 LSNHISSLFR Unmodified 1172.6302 0.63020611 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 9 0 1 50.09 50.09 3 0.00097505 11772 TMT1-8 87.942 52.612 68.788 117.77 61.008 42.855 85.126 113.76 65 116 65 44 87 109 1 1 1 1 1 1 49455 12935 655 12805 19903 25952 25952 1 LSNIFVIGK Unmodified 989.59097 0.59096706 1440 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 0 9 0 1 69.753 69.753 2 0.0080466 19648 TMT1-8 95.502 39.491 364.83 565.26 421.47 423.21 570.54 577.48 345 561 440 420 583 557 2 2 2 2 2 2 79001 12936 1440 12806 19904 25953;25954 25954 2 LSNRPAFMPSEGK Unmodified 1432.7133 0.71328381 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 8 0 1 45.658 45.658 3 0.0033973 11869 TMT1-7 70.529 0 251.29 539.05 410.66 349.83 321.92 635.74 239 529 425 348 344 605 1 1 1 1 1 1 41663 12937 195 12807 19905 25955 25955 1 LSNRPAFMPSEGR Unmodified 1460.7194 0.71943182 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 8.5 0.5 1 1 42.159 42.159 3 2.0284E-08 10436 TMT1-7 125.29 112.8 463.94 577.06 525.31 348.39 500.37 710.6 438 580 534 356 517 680 3 3 3 3 3 3 132830 12938 672 12808 19906;19907 25956;25957;25958 25956 3 LSNTSPEFQEMSLLER Unmodified 1879.8986 0.89857798 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 4.5 0.5 1 1 66.947 66.947 3 1.2855E-09 20605 TMT1-4 116.06 90.195 60.794 101.83 155.73 76.439 91.424 98.661 58 102 153 80 94 95 2 2 2 2 2 2 20109 12939 2744 12809 19908;19909 25959;25960;25961 25960 3 LSPDAVAQLAFQMAFLR Unmodified 1876.9869 0.98693948 870 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 0 9 0 1 98.451 98.451 3 3.3769E-07 30452 TMT1-8 75.968 41.666 14.91 14.85 6.2892 7.1541 6.4872 14.739 14 15 7 7 7 14 1 1 1 1 1 1 2343.8 12940 870 12810 19910 25962 25962 1 LSPDGHFGSK Unmodified 1043.5036 0.50360861 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 6 0 1 40.612 40.612 3 0.0067862 10425 TMT1-5 47.559 17.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12941 2238 12811 19911 25963 25963 1 LSPEDYTLK Unmodified 1064.539 0.53899107 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 5.5 0.5 1 1 56.716 56.716 2 0.00018479 16751 TMT1-5 146.69 53.32 184.36 382.4 249.59 249.2 255.07 341.3 175 375 263 246 266 327 2 2 2 2 2 2 44812 12942 533 12812 19912;19913 25964;25965 25965 2 LSPEELLLR Unmodified 1068.6179 0.61791009 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 4 2.16 1 1 1 66.078 66.078 2 1.4246E-05 20340 TMT1-4 154.71 76.529 759.25 1301 773.25 890.82 1151.6 972.38 718 1283 827 877 1172 943 3 3 3 3 3 3 166020 12943 690;691 12813 19914;19915;19916 25966;25967;25968;25969 25967 4 LSPEPWTPETGLVTDAFK Unmodified 1986.9939 0.99385857 222 O60488-2;O60488 ACSL4 Long-chain-fatty-acid--CoA ligase 4 no no 0 0 0 0 0 6 0 1 77.5 77.5 3 1.9546E-14 24966 TMT1-5 124.43 104.18 108.17 130.34 104.63 110.94 104.52 128.14 102 131 109 109 109 123 2 2 2 2 2 2 16222 12944 222 12814 19917 25970;25971 25970 2 LSPFMADIR Unmodified 1048.5376 0.53755128 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7.5 0.5 1 1 62.52 62.52 2 3.2078E-07 18481 TMT1-7 167.04 96.126 1487.4 1998 1521.7 1382.6 1280.3 2446.2 1404 1996 1581 1370 1365 2329 4 4 4 4 4 4 534700 12945 831 12815 19918;19919 25972;25973;25974;25975 25974 4 LSPFTFAATDD Unmodified 1183.5397 0.53971935 1709 Q13488;Q13488-2 TCIRG1 V-type proton ATPase 116 kDa subunit a isoform 3 yes no 0 0 0 0 0 6 0 1 79.134 79.134 2 0.025762 25588 TMT1-5 68.224 46.076 7.2013 38.558 19.379 46.579 19.024 53.823 7 37 22 44 22 51 1 1 1 1 1 1 4576.6 12946 1709 12816 19920 25976 25976 1 LSPGETPER Unmodified 984.48762 0.4876242 2022 Q6NYC8;Q6NYC8-2 PPP1R18 Phostensin yes no 0 0 0 0 0 3 0 1 34.164 34.164 2 0.034442 9011 TMT1-2 72.23 28.461 84.952 93.111 70.387 58.019 62.714 76.028 80 94 73 58 65 73 1 1 1 1 1 1 5268.2 12947 2022 12817 19921 25977 25977 1 LSPLHER Unmodified 850.4661 0.4661009 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 6.33 1.25 1 1 1 30.979 30.979 3 0.0016107 6628 TMT1-5 77.282 38.491 61.106 133.99 75.99 49.889 70.438 105.66 58 131 80 51 73 101 2 2 2 2 2 2 12774 12948 923 12818 19922;19923;19924 25978;25979;25980 25979 3 LSPNAWK Unmodified 814.43374 0.43373813 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 51.088 51.088 2 0.030583 12257 TMT1-8 89.142 42.479 107.5 225.64 135.17 171.55 155.39 119.22 102 221 145 167 160 116 1 1 1 1 1 1 20676 12949 1900 12819 19925 25981 25981 1 LSPPYSSPQEFAQDVGR Unmodified 1876.8955 0.89554151 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 5 0 1 61.602 61.602 3 2.6128E-10 18555 TMT1-4 114.01 103.53 54.225 49.917 41.319 67.815 40.826 60.663 51 51 44 65 44 58 1 1 1 1 1 1 18022 12950 1688 12820 19926 25982 25982 1 LSPQAVNSIAK Unmodified 1126.6346 0.63462279 966 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 0 8 0 1 51.466 51.466 3 0.00033594 14218 TMT1-7 96.604 72.754 275.57 622.6 406.44 402.08 463.1 505.93 262 609 428 398 477 487 1 1 1 1 1 1 45492 12951 966 12821 19927 25983 25983 1 LSPQTLTTIVK Unmodified 1199.7125 0.71253876 931 P28676 GCA Grancalcin yes yes 0 0 0 0 0 9 0 1 63.72 63.72 2 4.0479E-11 17242 TMT1-8 159.09 98.113 122.88 136.02 151.23 99.951 134.07 165.67 116 138 152 102 138 159 2 2 2 2 2 2 22358 12952 931 12822 19928 25984;25985 25985 2 LSPSPSSR Unmodified 829.42938 0.42938104 816;1577 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 0 0 6 0 1 29.556 29.556 2 0.0038045 6140 TMT1-5 129.56 48.243 115.53 160.73 103.12 103.09 119.48 159.69 109 160 109 102 124 153 2 2 2 2 2 2 15406 12953 816;1577 12823 19929 25986;25987 25987 2 LSPTDNLPR Unmodified 1011.5349 0.53490874 599 P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 0 5 0 1 44.567 44.567 2 0.0023543 11830 TMT1-4 104.01 47.58 53.884 104.01 52.9 75.058 83.902 106.34 51 102 58 73 87 102 1 1 1 1 1 1 10523 12954 599 12824 19930 25988 25988 1 LSPTVILDNQVTYVPGGK Unmodified 1900.0306 0.030578432 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 7.33 0.471 2 1 70.504 70.504 2;3;4 8.9845E-19 21672 TMT1-7 136.99 117.74 323.5 381.6 308.63 269.43 329.22 439.39 305 384 319 269 341 421 4 4 4 4 4 4 102890 12955 1684 12825 19931;19932;19933 25989;25990;25991;25992 25992 4 LSPVTACAGQTLQFK Unmodified 1619.8341 0.83412723 2197 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 0 9 0 1 61.659 61.659 3 4.5511E-07 16379 TMT1-8 84.842 55.866 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12956 2197 12826 19934 25993 25993 1 LSPVYAGK Unmodified 833.4647 0.46470391 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 1 47.465 47.465 2 0.012053 12645 TMT1-7 97.093 38.9 224.46 419.83 331.03 211.99 232.25 446.42 213 414 339 216 246 425 1 1 1 1 1 1 66393 12957 471 12827 19935 25994 25994 1 LSQDILCDALQQWACNNIK Unmodified 2289.0882 0.08818644 2523 Q9BSF0 C2orf88 Small membrane A-kinase anchor protein yes yes 0 0 0 0 0 8.5 0.5 1 1 87.957 87.957 3;4 1.5759E-11 26594 TMT1-8 97.32 70.291 84.734 100.06 101.08 63.959 114.56 111.86 80 101 102 66 116 108 3 3 3 3 3 3 10871 12958 2523 12828 19936;19937 25995;25996;25997 25997 3 LSQEDPDYGIR Unmodified 1291.6044 0.60444487 457 P04040 CAT Catalase yes yes 0 0 0 0 0 2.5 0.5 1 1 46.633 46.633 2 1.0615E-11 13846 TMT1-2 173.07 127.1 169.64 225.43 151.52 137.77 214.48 210.28 160 225 159 138 218 203 2 2 2 2 2 2 65047 12959 457 12829 19938;19939 25998;25999 25999 2 LSQEINK Unmodified 830.44978 0.44978213 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 6 0 1 42.485 42.485 2 0.04718 11064 TMT1-5 83.005 22.032 61.358 110.95 53.173 58.751 78.386 75.581 58 109 58 58 80 73 1 1 1 1 1 1 11860 12960 1669 12830 19940 26000 26000 1 LSQEINKNEER Unmodified 1358.679 0.6790068 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 4.5 0.5 1 1 36.684 36.684 3 1.1427E-08 9026 TMT1-3 154.74 102.91 509.42 889.74 731.51 564 761.15 808.69 483 880 751 569 779 779 2 2 2 2 2 2 53559 12961 1669 12831 19941;19942 26001;26002 26001 2 LSQGVTLVVDR Unmodified 1185.6717 0.67173657 871 P23919-2;P23919 DTYMK Thymidylate kinase yes no 0 0 0 0 0 6 0 1 54.774 54.774 2 0.015949 16023 TMT1-5 74.611 33.582 108.02 121.29 137.39 92.133 128.67 119.98 102 123 138 94 131 116 1 1 1 1 1 1 12214 12962 871 12832 19943 26003 26003 1 LSQIGVENTEENRR Unmodified 1643.8227 0.82271092 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 1 4 0 1 38.316 38.316 3 3.6914E-10 9673 TMT1-3 121.48 94.652 123.14 160.48 86.846 103.53 147.75 188.73 116 160 94 102 152 181 1 1 1 1 1 1 15665 12963 609 12833 19944 26004 26004 1 LSQKFPK Unmodified 846.49634 0.49633839 29 CON__P02769 yes yes 0 0 0 0 1 9 0 1 43.401 43.401 3 0.0188 9268 TMT1-8 66.429 20.003 65.918 39.628 609.62 26.139 49.008 91.344 65 51 567 58 51 87 1 1 1 1 1 1 5129.1 + 12964 29 12834 19945 26005 26005 1 LSQLGLDAGK Unmodified 1000.5553 0.55530983 1871 Q15750-2;Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes no 0 0 0 0 0 7 0 1 56.529 56.529 2 1.1468E-05 16105 TMT1-6 119.27 62.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12965 1871 12835 19946 26006 26006 1 LSQLHESR Unmodified 968.50394 0.50394297 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 8 0 1 29.7 29.7 3 0.027803 5730 TMT1-7 57.032 31.296 54.25 33.795 50.909 44.274 41.651 68.101 51 36 51 44 44 65 1 1 1 1 1 1 2873.9 12966 2835 12836 19947 26007 26007 1 LSQLTSLLSSIEDK Unmodified 1532.8298 0.82975336 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 8 0 2 87.503 87.503 2;3 0.00024184 28217 TMT1-7 89.959 55.581 54.226 49.917 41.289 68.472 64.086 52.537 51 51 44 66 66 51 2 2 2 2 2 2 19775 12967 2320 12837 19948;19949 26008;26009 26009 2 LSQNNFALGYK Unmodified 1253.6404 0.64043645 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 8.33 0.471 2 1 57.116 57.116 2;3 5.5865E-17 16419 TMT1-7 188.91 139.38 924.06 1498.4 1219.3 1014.2 1138.3 1438.6 875 1486 1256 1014 1180 1380 4 4 4 4 4 4 234920 12968 2959 12838 19950;19951;19952 26010;26011;26012;26013 26011 4 LSQSGEVGEPAGTDPGLDDLDVALSNLEVK Unmodified 3024.4775 0.47751961 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 4.29 0.7 1 3 3 85.8 85.8 3;4;5 9.9116E-14 28237 TMT1-3 87.893 70.955 1400.8 1641.6 1613.9 1362 1618.6 1711.6 1322 1657 1644 1362 1662 1649 9 11 10 11 9 11 693320 12969 2112 12839 19953;19954;19955;19956;19957;19958;19959 26014;26015;26016;26017;26018;26019;26020;26021;26022;26023;26024 26016 11 LSSAETYSR Unmodified 1012.4825 0.48253882 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 4 0 1 36.043 36.043 2 0.00096483 8737 TMT1-3 126.24 108.77 84.948 85.547 77.36 81.69 60.563 107 80 87 80 80 65 102 1 1 1 1 1 1 10947 12970 2061 12840 19960 26025 26025 1 LSSAIAFTYNPR Unmodified 1338.6932 0.6932003 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 60.366 60.366 3 0.0095006 15869 TMT1-8 55.232 2.677 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12971 1229 12841 19961 26026 26026 1 LSSAMSAAK Unmodified 864.4375 0.43750288 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 8 0 1 44.504 44.504 2 0.00038901 11426 TMT1-7 93.598 13.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12972 1074 12842 19962 26027 26027 1 LSSDVLTLLIK Unmodified 1200.7329 0.73293985 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 9 0 1 84.169 84.169 2 2.9899E-06 25159 TMT1-8 121.6 67.446 46.541 57.503 64.031 58.674 48.025 76.448 44 58 65 58 51 73 1 1 1 1 1 1 6648.5 12973 1042 12843 19963 26028 26028 1 LSSEDILK Unmodified 903.49131 0.49131259 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 5 0 1 54.541 54.541 2 0.022983 15707 TMT1-4 86.833 12.642 146 203.19 177.15 129.45 168.68 214.78 138 203 181 131 174 206 1 1 1 1 1 1 15898 12974 1961 12844 19964 26029 26029 1 LSSEMNTSTVNSAR Unmodified 1495.6937 0.69367058 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 5 0 1 40.52 40.52 3 3.0941E-11 10265 TMT1-4 128.46 102.42 108.49 138.79 43.392 65.455 159.71 135.09 102 138 51 65 160 131 1 1 1 1 1 1 17218 12975 816 12845 19965 26030 26030 1 LSSESAR Unmodified 748.37153 0.37153181 2786 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 0 0 0 0 0 2.5 0.5 1 1 25.048 25.048 2 0.0012883 5273 TMT1-2 102.77 0 46.985 19.882 21.377 22.383 20.686 37.786 44 22 22 22 22 36 1 1 1 1 1 1 1473.5 12976 2786 12846 19966;19967 26031;26032 26032 2 LSSETGGMGSS Unmodified 1011.4179 0.41788965 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 0 3 0 1 43.701 43.701 2 0.026117 12797 TMT1-2 67.993 43.657 37.964 65.664 56.016 58.571 78.943 59.575 36 65 58 58 80 58 1 1 1 1 1 1 6102.9 12977 1844 12847 19968 26033 26033 1 LSSHPVLSK Unmodified 966.54983 0.54983053 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 9 0 1 39.684 39.684 3 0.0066198 8051 TMT1-8 64.297 34.043 46.541 57.503 64.07 57.819 93.38 66.625 44 58 65 58 94 65 1 1 1 1 1 1 2736.8 12978 3038 12848 19969 26034 26034 1 LSSLFPFALLQR Unmodified 1390.7973 0.79727144 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 9 0 1 89.408 89.408 3 0.001991 27212 TMT1-8 67.08 42.99 7.3873 6.6972 15.113 15.222 14.456 15.577 7 7 15 15 15 15 1 1 1 1 1 1 1684 12979 2596 12849 19970 26035 26035 1 LSSLPFQK Unmodified 918.51747 0.51746776 1408 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 0 9 0 1 59.568 59.568 2 7.0854E-09 15602 TMT1-8 176.41 59.251 306.72 436.92 376.9 364.55 401.81 452.24 290 436 389 361 415 435 2 2 2 2 2 2 81217 12980 1408 12850 19971 26036;26037 26037 2 LSSPATLNSR Unmodified 1044.5564 0.55637247 24 CON__P00761 yes yes 0 0 0 0 0 6.5 0.5 1 1 39.779 39.779 2 2.344E-06 9540 TMT1-6 159.11 91.209 167.8 262.22 249.29 201.2 309.42 254.47 159 261 254 203 313 247 2 2 2 2 2 2 50903 + 12981 24 12851 19972;19973 26038;26039 26039 2 LSSPAVITDK Unmodified 1029.5706 0.57062555 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 6 0 1 50.953 50.953 2 0.00066308 14547 TMT1-5 110.53 59.625 160.82 162.76 244.22 85.237 156.83 192.73 152 167 239 94 160 185 1 1 1 1 1 1 17445 12982 401 12852 19974 26040 26040 1 LSSPVLHR Unmodified 907.52395 0.52395013 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 8 0 1 35.982 35.982 3 0.00086196 8064 TMT1-7 77.282 35.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12983 1897 12853 19975 26041 26041 1 LSSQASEMAAAK Unmodified 1192.5758 0.57578728 3076 yes no 0 0 0 0 0 9 0 1 69.353 69.353 2 0.0035212 19472 TMT1-8 79.148 6.5051 121.5 389.03 169.7 97.755 192.29 239.69 116 376 183 102 196 230 1 1 1 1 1 1 118120 + 12984 3076 12854 19976 26042 26042 1 LSSQEESIGTLLDAIICR Unmodified 2004.0198 0.019755749 2994 Q9Y3C4-3;Q9Y3C4;Q9Y3C4-2 TPRKB EKC/KEOPS complex subunit TPRKB yes no 0 0 0 0 0 7 0 1 90.755 90.755 3 0.0090045 29383 TMT1-6 33.248 13.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12985 2994 12855 19977 26043 26043 1 LSSQEIQQFAALLHEYR Unmodified 2032.0378 0.037789075 2527 Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 CCM2 Cerebral cavernous malformations 2 protein yes no 0 0 0 0 0 8 0 1 76.488 76.488 3 1.2154E-07 24047 TMT1-7 99.021 64.719 68.836 87.679 78.421 56.821 100.96 90.927 65 88 80 58 102 88 2 2 2 2 2 2 6463.5 12986 2527 12856 19978 26044;26045 26045 2 LSSQISAGEEK Unmodified 1147.5721 0.57208211 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 4 0 1 43.517 43.517 3 3.5625E-05 11766 TMT1-3 109.16 91.689 77.058 116.31 114.97 71.35 84.366 97.797 73 116 116 73 87 94 1 1 1 1 1 1 7054.9 12987 2107 12857 19979 26046 26046 1 LSSTWEGIQAGK Unmodified 1275.6459 0.64591575 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 7 0 2 57.384 57.384 2;3 2.513E-18 16417 TMT1-6 183.33 115.32 467.6 852.58 577.39 556.59 772.12 651.68 443 840 606 554 784 632 2 2 2 2 2 2 90452 12988 1053 12858 19980;19981 26047;26048 26047 2 LSTHSPFR Unmodified 943.48756 0.48756462 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 0 8 0 1 35.377 35.377 3 0.0061131 7828 TMT1-7 80.684 46.431 107.92 152.33 126.84 117.16 110.2 167.42 102 152 131 116 116 160 1 1 1 1 1 1 5822.9 12989 643 12859 19982 26049 26049 1 LSTIALALGVER Unmodified 1241.7343 0.73433683 956 P30153;P30154-4;P30154;P30154-2;P30154-5 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 0 9 0 1 73.642 73.642 2 6.4035E-11 21074 TMT1-8 149.33 92.284 153.9 196.21 116.76 108.98 170.25 196.62 145 196 124 109 174 189 2 2 2 2 2 2 35167 12990 956 12860 19983 26050;26051 26050 2 LSTLCPSAVLQR Unmodified 1343.7231 0.72312022 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 1 58.707 58.707 2 2.0335E-17 15214 TMT1-8 157.78 104.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12991 2116 12861 19984 26052 26052 1 LSVAAQEAAR Unmodified 1014.5458 0.54580778 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 39.116 39.116 2 0.00040946 9675 TMT1-4 118.91 95.866 138.89 204.83 107.67 109.02 196.73 156.42 131 203 116 109 198 152 1 1 1 1 1 1 26258 12992 1833 12862 19985 26053 26053 1 LSVDYGK Unmodified 780.40177 0.4017693 1491;2068;1492;2510;622 P0DPH8;P0DPH7;P0DPH7-2;P68363;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 0 0 0 0 0 6.5 0.5 1 1 47.597 47.597 2 0.0053079 13161 TMT1-5 134.66 39.043 3662.7 5082.1 4805.4 3446.9 5133.3 4905.3 3464 5084 4882 3504 5220 4739 3 3 3 3 3 3 1073800 12993 622;1491;2068;2510;1492 12863 19986;19987 26054;26055;26056 26055 3 LSVDYGKK Unmodified 908.49673 0.49673232 1491;2068;1492;2510;622 P0DPH8;P0DPH7;P0DPH7-2;P68363;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366 TUBA1B;TUBA1A;TUBA1C;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 0 0 0 0 1 7.5 0.5 1 1 43.37 43.37 3 0.013844 10948 TMT1-7 76.221 25.343 5748.2 8378.1 6398 4942.6 5701.2 9121.1 5432 8339 6608 4969 5967 8709 2 2 2 2 2 2 1079600 12994 622;1491;2068;2510;1492 12864 19988;19989 26057;26058 26058 2 LSVEAPPK Unmodified 839.47527 0.4752686 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5;P53990-6 IST1 IST1 homolog yes no 0 0 0 0 0 6 0 1 46.144 46.144 3 0.017877 12627 TMT1-5 64.567 15.807 107.58 209.66 135.78 179.38 143.9 199.5 102 206 145 174 152 191 1 1 1 1 1 1 13566 12995 1292 12865 19990 26059 26059 1 LSVEEFFMDLHNFR Unmodified 1782.8399 0.83994089 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 81.25 81.25 3 0.0002611 25766 TMT1-6 78.505 64.542 15.796 45.556 11.663 39.367 20.162 30.339 15 44 15 37 22 29 1 1 1 1 1 1 7923 12996 228 12866 19991 26060 26060 1 LSVEIWDWDR Unmodified 1317.6354 0.63535107 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 0 6 0 1 76.078 76.078 2 0.017536 24448 TMT1-5 77.14 48.443 30.444 66.153 57.074 35.012 49.663 60.411 29 65 58 36 51 58 1 1 1 1 1 1 10463 12997 757 12867 19992 26061 26061 1 LSVISVEDPPQR Unmodified 1338.7143 0.71432967 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 5 0 1 54.322 54.322 3 0.0004077 15664 TMT1-4 87.026 62.171 68.793 78.926 93.048 80.315 83.954 97.808 65 80 94 80 87 94 1 1 1 1 1 1 26078 12998 1055 12868 19993 26062 26062 1 LSVLGAITSVQQR Unmodified 1370.7882 0.78816332 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 9 0 1 66.989 66.989 3 1.3037E-11 18442 TMT1-8 124.38 101.33 54.25 42.43 43.522 28.439 35.323 29.906 51 44 44 29 36 29 1 1 1 1 1 1 12416 12999 1439 12869 19994 26063 26063 1 LSVLLLEK Unmodified 913.58482 0.58481905 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 9 0 1 71.375 71.375 2 0.027905 20185 TMT1-8 72.038 36.42 145.86 222.23 184.42 183.41 182.44 229.31 138 221 191 181 190 220 1 1 1 1 1 1 11266 13000 1928 12870 19995 26064 26064 1 LSVNSVTAGDYSR Unmodified 1367.6681 0.66810776 1865 Q15631 TSN Translin yes yes 0 0 0 0 0 5 0 1 48.928 48.928 2 8.5167E-13 13551 TMT1-4 162.13 118.48 46.525 81.202 46.704 75.693 69.764 90.751 44 80 51 73 73 87 1 1 1 1 1 1 21973 13001 1865 12871 19996 26065 26065 1 LSVPDPEER Unmodified 1040.5138 0.51383895 1962 Q5JSP0;Q5JSP0-3 FGD3 FYVE, RhoGEF and PH domain-containing protein 3 yes no 0 0 0 0 0 2 0 1 47.08 47.08 2 0.014732 13730 TMT1-1 82.426 55.464 30.555 43.798 57.282 60.436 33.851 29.948 29 44 58 59 36 29 1 1 1 1 1 1 7159.2 13002 1962 12872 19997 26066 26066 1 LSVPMPYTLK Unmodified 1147.6311 0.63111731 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 9 0 1 67.153 67.153 3 0.009056 18573 TMT1-8 58.699 25.475 30.64 44.033 42.86 43.818 33.296 68.34 29 44 44 43 36 65 1 1 1 1 1 1 3657 13003 799 12873 19998 26067 26067 1 LSVQGEVSTFTGK Unmodified 1351.6983 0.69834526 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 7 0 1 61.31 61.31 3 8.301E-06 17961 TMT1-6 104.41 78.751 122.63 181.72 155.4 139.23 124.64 174.47 116 181 160 138 131 167 1 1 1 1 1 1 24562 13004 1759 12874 19999 26068 26068 1 LSVVHEK Unmodified 810.45995 0.45995289 819 P20810-8;P20810-2;P20810;P20810-5;P20810-10;P20810-6 CAST Calpastatin yes no 0 0 0 0 0 6 0 1 36.525 36.525 3 0.0037066 8729 TMT1-5 98.299 58.096 208.37 243.56 120.15 133.13 153.85 215.21 196 244 131 131 160 206 1 1 1 1 1 1 35517 13005 819 12875 20000 26069 26069 1 LSVYAALQR Unmodified 1019.5764 0.57637963 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 55.307 55.307 2 0.0016125 13883 TMT1-8 122.19 63.591 169.6 273.87 118.2 140.42 179.27 196.36 160 270 131 138 184 189 1 1 1 1 1 1 19012 13006 1833 12876 20001 26070 26070 1 LSVYQAMK Unmodified 938.48954 0.48953845 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 53.351 53.351 2 0.011138 13144 TMT1-8 88.294 52.676 61.138 117.89 84.223 56.79 84.229 121.25 58 116 87 58 87 116 1 1 1 1 1 1 6292.8 13007 1833 12877 20002 26071 26071 1 LSYGEDLQMDWDGR Unmodified 1683.7199 0.71988533 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 4 0 1 66.59 66.59 3 1.1604E-08 20795 TMT1-3 98.582 87.937 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13008 471 12878 20003 26072 26072 1 LSYNQLVER Unmodified 1120.5877 0.58767259 2182 Q8N5J2-4;Q8N5J2-2;Q8N5J2;Q8N5J2-3 FAM63A Protein FAM63A yes no 0 0 0 0 0 5 0 1 49.982 49.982 2 0.0053321 14118 TMT1-4 97.472 45.522 99.492 130.68 119.51 117.55 112.31 105.53 94 131 123 116 116 102 1 1 1 1 1 1 199910 13009 2182 12879 20004 26073 26073 1 LSYNTASNK Unmodified 996.48762 0.4876242 1172 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 0 7 0 1 39.89 39.89 2 0.00022827 9541 TMT1-6 144.65 47.048 46.495 96.23 38.939 59.732 71.304 67.255 44 94 44 58 73 65 1 1 1 1 1 1 5435 13010 1172 12880 20005 26074 26074 1 LSYYEYDFER Unmodified 1383.5983 0.59829686 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 4 0 1 60.297 60.297 2 1.9915E-05 18308 TMT1-3 151.83 114.63 84.651 139.76 81.39 88.265 105.01 144.11 80 138 87 87 109 138 1 1 1 1 1 1 24265 13011 1601 12881 20006 26075 26075 1 LTAALVLR Unmodified 855.55419 0.55418762 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 9 0 1 58.681 58.681 2 0.040812 15273 TMT1-8 67.981 19.42 53.986 72.995 61.987 82.863 46.913 76.479 51 73 65 80 51 73 1 1 1 1 1 1 15048 13012 1256 12882 20007 26076 26076 1 LTAASVGVQGSGWGWLGFNK Unmodified 2034.0323 0.032309767 465 P04179-4;P04179;P04179-2 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 9 0 2 79.869 79.869 3;4 3.1539E-40 23610 TMT1-8 153.21 130.67 444.28 503.84 465.31 435.85 514.9 597.19 419 509 478 433 531 574 5 5 5 5 5 5 131270 13013 465 12883 20008;20009 26077;26078;26079;26080;26081 26078 5 LTADDEAFLSANAGAILSQFEK Unmodified 2310.138 0.13795663 2290 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 0 6.67 0.471 1 2 91.166 91.166 3;4 2.7814E-29 29527 TMT1-6 138.82 115.02 100.28 168.68 134.52 93.691 113.1 144.95 95 167 138 95 117 139 5 5 5 5 5 5 30370 13014 2290 12884 20010;20011;20012 26082;26083;26084;26085;26086 26086 5 LTAEDLFEAR Unmodified 1163.5823 0.58225287 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 63.167 63.167 2 0.00048689 19521 TMT1-3 115.82 67.789 153.67 188.02 162.5 137.78 178.91 149.46 145 189 167 138 182 145 2 2 2 2 2 2 32154 13015 1833 12885 20013 26087;26088 26088 2 LTAELIEQAAQYTNAVR Unmodified 1889.9847 0.98469087 602 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 0 7 0 1 79.311 79.311 3 0.0027732 25093 TMT1-6 54.427 40.398 99.757 92.56 107.28 103.25 98.055 113.4 94 95 109 102 102 109 2 2 2 2 2 2 10683 13016 602 12886 20014 26089;26090 26090 2 LTALADLEDWEELEK Unmodified 1773.8673 0.86726108 2624 Q9H269-2;Q9H269 VPS16 Vacuolar protein sorting-associated protein 16 homolog yes no 0 0 0 0 0 4 0 1 85.503 85.503 3 1.515E-05 28153 TMT1-3 70.197 50.091 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13017 2624 12887 20015 26091 26091 1 LTAQVASLTSELTTLNATIQQQDQELAGLK Unmodified 3184.6827 0.68270178 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 7 0 1 96.414 96.414 4 0.00023202 31389 TMT1-6 47.104 32.252 23.459 13.086 13.637 48.134 19.209 46.356 22 14 15 45 22 44 2 2 1 1 2 2 5649.8 13018 1805 12888 20016 26092;26093 26093 2 LTASSVGQIVGLCSAEIK Unmodified 1831.9713 0.97134899 1953 Q567U6 CCDC93 Coiled-coil domain-containing protein 93 yes yes 0 0 0 0 0 8 0 1 71.238 71.238 3 0.00011489 22003 TMT1-7 73.057 46.933 46.838 43.22 26.176 53.255 49.337 45.496 44 44 29 51 51 44 1 1 1 1 1 1 4568.2 13019 1953 12889 20017 26094 26094 1 LTAWTKPDCMK Unmodified 1349.6472 0.64717808 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 1 9 0 1 52.985 52.985 3 0.0025165 12961 TMT1-8 71.176 45.739 68.333 147.8 112.12 93.823 118.9 158.64 65 145 116 94 123 152 1 1 1 1 1 1 9140.9 13020 1222 12890 20018 26095 26095 1 LTAYAMTIPFVR Unmodified 1381.7428 0.74279303 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 9 0 2 74.956 74.956 2;3 0.00010874 21621 TMT1-8 93.623 69.772 77.451 93.653 68.254 106.01 74.893 114.06 73 94 73 102 80 109 2 2 2 2 2 2 19907 13021 1076 12891 20019;20020 26096;26097 26097 2 LTAYEFAK Unmodified 941.48583 0.48583328 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 7 0 1 56.592 56.592 2 0.006494 16150 TMT1-6 104.44 68.999 168.64 313.3 245.42 194.83 253.83 297.63 160 309 253 196 261 286 1 1 1 1 1 1 21662 13022 2204 12892 20021 26098 26098 1 LTCLQNLK Unmodified 988.53755 0.53755128 557 P08174-4;P08174;P08174-3;P08174-5;P08174-2;P08174-6;P08174-7 CD55 Complement decay-accelerating factor yes no 0 0 0 0 0 9 0 1 56.027 56.027 2 0.00048523 14148 TMT1-8 155.75 79.162 76.835 115.68 153.03 92.216 74.721 137.51 73 116 152 94 80 131 1 1 1 1 1 1 12563 13023 557 12893 20022 26099 26099 1 LTDADAMK Unmodified 863.40587 0.4058684 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 45.821 45.821 2 0.0013309 12352 TMT1-4 107.66 29.99 242.25 406.35 238.26 197.68 182.8 351.89 229 401 252 197 195 335 1 1 1 1 1 1 40622 13024 888 12894 20023;20024 26100;26101 26101 2 LTDAGIPPEVIMGIFSNISSIHR Unmodified 2466.2941 0.29408012 1962 Q5JSP0;Q5JSP0-3;Q5JSP0-2 FGD3 FYVE, RhoGEF and PH domain-containing protein 3 yes no 0 0 0 0 0 9 0 1 90.849 90.849 3 0.0042711 27778 TMT1-8 42.254 22.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13025 1962 12895 20025 26102 26102 1 LTDCVVMR Unmodified 992.47832 0.47832184 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 6 0 1 47.445 47.445 2 0.014417 13131 TMT1-5 93.992 67.299 168.81 304.06 224.58 165.09 215.51 326.44 160 300 232 167 224 312 1 1 1 1 1 1 21883 13026 848 12896 20026 26103 26103 1 LTDDHVQFLIYQILR Unmodified 1873.0098 0.0097834104 1890 Q16539;Q16539-2;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 9 0 1 82.034 82.034 3 5.4256E-06 24394 TMT1-8 91.845 63.548 61.397 63.57 86.732 73.601 54.155 91.197 58 65 87 73 58 87 1 1 1 1 1 1 22624 13027 1890 12897 20027 26104 26104 1 LTDEGAVHVNDR Unmodified 1324.6371 0.63714198 358 O95487-2;O95487;O95487-3 SEC24B Protein transport protein Sec24B yes no 0 0 0 0 0 2 0 1 36.373 36.373 3 0.0022649 9550 TMT1-1 72.705 44.692 37.967 43.007 74.696 34.079 43.439 29.674 36 44 73 36 44 29 1 1 1 1 1 1 5989.9 13028 358 12898 20028 26105 26105 1 LTDFGFAK Unmodified 897.45962 0.45961853 1898;1170 P49137;P49137-2;Q96PN8;O43930;P51817;Q16644 MAPKAPK2;TSSK3;PRKY;PRKX;MAPKAPK3 MAP kinase-activated protein kinase 2;Testis-specific serine/threonine-protein kinase 3;Putative serine/threonine-protein kinase PRKY;cAMP-dependent protein kinase catalytic subunit PRKX;MAP kinase-activated protein kinase 3 no no 0 0 0 0 0 8 0 1 63.84 63.84 3 0.010142 19048 TMT1-7 73.931 28.619 84.412 131.54 128.57 109.06 128.15 112.54 80 131 131 109 131 109 1 1 1 1 1 1 7746.9 13029 1170;1898 12899 20029 26106 26106 1 LTDFGFCAQITPEQSK Unmodified 1840.8665 0.86654957 1680;1676 Q13177;O75914-2;O75914;O75914-4;O75914-3;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 0 0 0 7 0 2 69.063 69.063 2;3 3.1095E-10 21046 TMT1-6 97.69 84.553 206.96 378.88 241.72 209.4 304.55 354.82 196 373 254 210 312 341 2 2 2 2 2 2 24846 13030 1680;1676 12900 20030;20031 26107;26108;26109 26109 3 LTDFNFLMVLGK Unmodified 1396.7425 0.74245868 501;757 P05771-2;P05771;P17252 PRKCB;PRKCA Protein kinase C beta type;Protein kinase C alpha type no no 0 0 0 0 0 9 0 1 91.253 91.253 3 6.3087E-06 27930 TMT1-8 105.17 70.638 115.42 136.65 143.29 108.11 132.34 205.16 109 138 145 109 138 196 2 2 2 2 2 2 27098 13031 501;757 12901 20032 26110;26111 26111 2 LTDNIFLEILYSTDPK Unmodified 1880.9771 0.97714588 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 7.33 0.471 2 1 96.777 96.777 2;3;4 1.8515E-07 31564 TMT1-7 83.53 50.584 161.19 226.39 128.23 150.12 154.7 205.59 152 225 138 147 160 197 5 5 5 5 4 5 27572 13032 3006 12902 20033;20034;20035 26112;26113;26114;26115;26116;26117 26117 6 LTDPSLLYLEVSTLVSK Unmodified 1877.0397 0.039746135 230 O60645 EXOC3 Exocyst complex component 3 yes yes 0 0 0 0 0 8 0 1 95.642 95.642 3 1.2397E-05 31163 TMT1-7 83.751 65.613 7.3473 15.22 14.612 14.981 28.869 22.628 7 15 15 15 29 22 1 1 1 1 1 1 2075.4 13033 230 12903 20036 26118 26118 1 LTDQLPLIIVCDR Unmodified 1554.844 0.84396364 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 6.5 0.5 1 1 75.345 75.345 2;3 9.2476E-05 23496 TMT1-6 72.175 39.087 30.652 51.622 34.428 28.552 58.095 36.718 29 51 36 29 58 36 1 1 1 1 1 1 11626 13034 1540 12904 20037;20038 26119;26120 26120 2 LTDQPPLVQAIFSGDPEEIR Unmodified 2224.1376 0.1375627 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-5;Q8N8A2-3 ANKRD44 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B yes no 0 0 0 0 0 5 0 1 82.767 82.767 3 0.00052192 26821 TMT1-4 55.228 38.829 30.605 51.492 42.363 44.923 34.256 69.378 29 51 44 44 37 66 2 2 2 2 2 2 5558.3 13035 2192 12905 20039 26121;26122 26122 2 LTDWILQDGSADTFTR Unmodified 1837.8846 0.88464248 1578 Q03518 TAP1 Antigen peptide transporter 1 yes yes 0 0 0 0 0 6 0 1 76.701 76.701 3 2.7718E-05 24647 TMT1-5 82.707 54.126 30.725 35.635 35.725 20.966 50.565 52.923 29 36 36 22 51 51 1 1 1 1 1 1 7927.1 13036 1578 12906 20040 26123 26123 1 LTDYISK Unmodified 838.44363 0.44363412 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 0 0 6.5 0.5 1 1 55.052 55.052 2 0.010017 15502 TMT1-6 109.86 53.852 945.27 1453.1 1300.8 991.14 1061.3 1457.9 895 1446 1328 996 1106 1396 4 4 4 4 4 4 236940 13037 310 12907 20041;20042 26124;26125;26126;26127 26126 4 LTDYVAFLEN Unmodified 1183.5761 0.57610486 2480 Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 0 5 0 1 86.125 86.125 2 0.000707 28176 TMT1-4 109.21 95.635 54.13 49.652 57.555 43.746 48.712 76.428 51 51 58 44 51 73 2 2 2 2 2 2 23191 13038 2480 12908 20043 26128;26129 26129 2 LTEADAYLQILIEQLK Unmodified 1860.0244 0.024430422 2454 Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 OSBPL9 Oxysterol-binding protein-related protein 9 yes no 0 0 0 0 0 8 0 1 99.046 99.046 3 7.291E-05 32394 TMT1-7 61.641 40.978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13039 2454 12909 20044 26130 26130 1 LTECLETILNK Unmodified 1332.6959 0.69590241 335 O94973-2;O94973;O94973-3 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 0 7 0 1 74.87 74.87 2 2.7E-06 23332 TMT1-6 102.53 45.483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13040 335 12910 20045 26131 26131 1 LTEDLEYHELLDR Unmodified 1644.7995 0.79951586 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 59.755 59.755 3 8.8816E-17 19034 TMT1-2 173.25 145.4 69.726 109.76 90.508 119.99 74.544 105.54 66 109 95 116 80 101 2 2 2 2 2 2 26227 13041 839 12911 20046;20047 26132;26133 26133 2 LTEEFGPHTK Unmodified 1157.5717 0.57168818 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 5 0 1 43.802 43.802 3 0.00016299 11562 TMT1-4 105.2 76.805 314.14 359.32 279.07 284.02 286.42 356.4 296 362 291 280 298 342 1 1 1 1 1 1 24425 13042 1314 12912 20048 26134 26134 1 LTELETAVR Unmodified 1030.5659 0.56587452 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 4 0 1 54.042 54.042 2 0.00081517 15825 TMT1-3 128.38 56.245 178.2 281.08 288.43 194.49 251.43 368.06 169 280 291 198 261 352 1 1 1 1 1 1 85467 13043 1720 12913 20049 26135 26135 1 LTELGTVDPK Unmodified 1071.5812 0.58119023 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 55.327 55.327 2 0.0073008 16099 TMT1-4 88.181 48.136 115 205.66 154.01 139.04 139.05 181.52 109 203 160 138 145 174 1 1 1 1 1 1 19683 13044 1139 12914 20050 26136 26136 1 LTELYNAYVETQDQLLLEK Unmodified 2282.1682 0.16819413 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 7 0 1 89.135 89.135 3 0.0017449 28765 TMT1-6 43.164 28.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13045 668 12915 20051 26137 26137 1 LTEMETLQSQLMAEK Unmodified 1750.8481 0.84812231 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 5.5 1.12 1 1 1 1 72.937 72.937 2;3;4 1.5451E-22 23167 TMT1-5 169.54 133.88 610.56 867.42 704.14 541.07 614.61 964.25 577 865 724 544 643 921 5 5 5 5 5 5 235870 13046 1019 12916 20052;20053;20054;20055 26138;26139;26140;26141;26142;26143 26141 6 LTEMETLQSQLMAEK Oxidation (M) 1766.843 0.84303694 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 5.33 0.471 2 1 65.323 65.323 3;4 8.1578E-06 20928 TMT1-5 101.39 82.311 238.9 251.67 211.84 173.46 218.04 272 225 255 218 174 225 261 3 3 3 3 3 3 45531 13047 1019 12916 20056;20057;20058 26144;26145;26146 26146 188;189 3 LTEQAVQAINK Unmodified 1213.6667 0.6666512 2514 Q9BRF8;Q9BRF8-2;Q9BRF8-3 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes no 0 0 0 0 0 6 0 1 52.696 52.696 3 0.0010388 15179 TMT1-5 86.313 51.089 130.3 166.56 140.36 131.89 155.89 157.58 123 167 145 131 160 152 1 1 1 1 1 1 19813 13048 2514 12917 20059 26147 26147 1 LTESLNIFETIVNNR Unmodified 1761.9261 0.92611336 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 8 0 1 85.186 85.186 3 8.3332E-08 27338 TMT1-7 109.83 86.688 30.816 58.945 41.237 60.147 41.948 38.245 29 58 44 58 44 37 1 2 2 2 2 2 17667 13049 1773 12918 20060 26148;26149 26149 2 LTESPCALVASQYGWSGNMER Unmodified 2355.0624 0.06236562 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 6 0 1 67.71 67.71 3 3.999E-18 21177 TMT1-5 121.48 115.36 30.731 35.653 34.649 45.092 49.713 45.485 29 36 36 44 51 44 1 1 1 1 1 1 27316 13050 708 12919 20061 26150 26150 1 LTEVLLGHNSWR Unmodified 1423.7572 0.75719754 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 59.481 59.481 3 3.4146E-10 15508 TMT1-8 145.81 114.39 153.66 198.78 155.02 121.16 214.94 310.47 145 199 160 123 221 297 1 1 1 1 1 1 49698 13051 1067 12920 20062 26151 26151 1 LTEVSISSDAFFPFR Unmodified 1714.8566 0.85663681 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 8 0 2 81.59 81.59 2;3 2.6713E-11 26032 TMT1-7 127.71 103.37 46.571 69.46 48.817 44.052 60.121 48.386 44 69 51 44 61 47 2 2 2 2 2 2 27380 13052 981 12921 20063;20064 26152;26153 26153 2 LTFDEYR Unmodified 942.4447 0.44469675 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 5 0 1 51.318 51.318 2 4.7233E-05 14525 TMT1-4 127.12 54.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13053 670 12922 20065 26154 26154 1 LTFDSSFSPNTGK Unmodified 1399.662 0.66195975 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 60.556 60.556 2;3 3.9771E-13 17772 TMT1-7 164.9 119.53 182.93 362.03 327.78 173.32 322.79 267.95 174 357 331 182 325 260 2 2 2 2 2 2 40898 13054 833 12923 20066;20067 26155;26156 26156 2 LTFDSSFSPNTGKK Unmodified 1527.7569 0.75692277 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 1 9 0 2 53.745 53.745 3;4 2.4785E-05 13265 TMT1-8 89.231 59.932 483.16 815.27 518.7 465.15 531.53 804.59 457 805 546 463 555 769 3 3 3 3 3 3 41777 13055 833 12924 20068;20069 26157;26158;26159 26159 3 LTFDTTFSPNTGK Unmodified 1427.6933 0.69325988 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 8 0 1 62.878 62.878 2 0.00038595 18734 TMT1-7 95.498 79.742 46.544 65.068 57.051 35.156 42.071 68.089 44 65 58 36 44 65 1 1 1 1 1 1 18985 13056 1119 12925 20070 26160 26160 1 LTFDTTFSPNTGKK Unmodified 1555.7882 0.7882229 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 1 9 0 1 55.964 55.964 3 2.3302E-09 14123 TMT1-8 110.14 83 264.26 330.86 209.41 264.35 216.17 478.86 249 331 224 257 234 455 1 1 1 1 1 1 26338 13057 1119 12926 20071 26161 26161 1 LTFEELER Unmodified 1035.5237 0.52367535 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2 NEXN Nexilin yes no 0 0 0 0 0 4 0 1 57.344 57.344 2 9.5987E-05 17206 TMT1-3 154.71 103.65 455.1 522.79 433.44 347.28 385.47 494.28 429 527 446 348 400 474 1 1 1 1 1 1 119440 13058 1635 12927 20072 26162 26162 1 LTFIPGFIGSLK Unmodified 1291.754 0.75400964 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 9 0 1 83.458 83.458 3 2.5901E-07 24879 TMT1-8 110.31 69.023 77.283 148.23 50.11 75.49 69.774 90.751 73 145 58 73 73 87 1 1 1 1 1 1 20708 13059 2448 12928 20073 26163 26163 1 LTFISGR Unmodified 792.44939 0.4493882 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 0 9 0 1 51.957 51.957 2 0.011301 12553 TMT1-8 117.18 35.856 190.82 362.59 262.85 220.53 284.93 302.08 181 357 273 221 292 291 1 1 1 1 1 1 21378 13060 1808 12929 20074 26164 26164 1 LTFLEEDDKDLYILWK Unmodified 2040.0456 0.045559794 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 1 7 0 1 83.481 83.481 3 2.8903E-09 26664 TMT1-6 115.83 92.026 30.453 74.813 48.213 52.241 33.422 53.412 29 73 51 51 36 51 1 1 1 1 1 1 5646.9 13061 2782 12930 20075 26165 26165 1 LTFSCLGGSDNFK Unmodified 1444.6657 0.66566492 1835 Q15185-3;Q15185-4;Q15185;Q15185-2 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 0 8 0 1 64.552 64.552 3 2.2604E-13 19390 TMT1-7 160.22 137.5 593.47 697.92 474.38 391.17 479.01 666.44 559 701 496 392 497 638 3 3 3 3 3 3 104350 13062 1835 12931 20076 26166;26167;26168 26167 3 LTFSGLLNALDGVASTEAR Unmodified 1934.0109 0.010905622 2958 Q9Y276 BCS1L Mitochondrial chaperone BCS1 yes yes 0 0 0 0 0 8 0 1 90.635 90.635 3 4.4382E-05 29268 TMT1-7 69.763 56.996 15.759 21.709 38.054 13.42 37.573 14.918 15 22 37 15 37 15 1 1 1 1 1 1 3033.3 13063 2958 12932 20077 26169 26169 1 LTFSVTLK Unmodified 907.53787 0.53786886 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 64.965 64.965 2 0.0070658 17674 TMT1-8 103.83 54.243 176.61 255.79 216.65 140.06 293.24 319.96 167 255 221 145 297 308 1 1 1 1 1 1 21387 13064 758 12933 20078 26170 26170 1 LTFTAGGAIEFGQR Unmodified 1466.7518 0.75177781 2350 Q969T9;Q969T9-2 WBP2 WW domain-binding protein 2 yes no 0 0 0 0 0 8 0 1 65.519 65.519 3 6.8439E-05 19647 TMT1-7 88.282 70.146 23.328 21.356 28.679 29.181 42.874 22.229 22 22 29 29 43 22 1 1 1 1 1 1 5771.4 13065 2350 12934 20079 26171 26171 1 LTFVDFLTYDILDQNR Unmodified 1971.9942 0.99419293 827 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 0 0 8 0 2 99.046 99.046 2;3 3.7332E-05 32342 TMT1-7 79.346 68.302 23.496 21.824 0 14.902 21.287 30.307 22 22 0 14 22 29 1 1 0 2 2 2 5698.5 13066 827 12935 20080;20081 26172;26173 26172 2 LTFYYGTIDPWCPK Unmodified 1759.828 0.82797922 2656 Q9H6V9-4;Q9H6V9-3;Q9H6V9;Q9H6V9-2 C2orf43 UPF0554 protein C2orf43 yes no 0 0 0 0 0 9 0 1 78.157 78.157 3 0.00027269 22885 TMT1-8 69.716 47.183 15.785 36.891 20.86 14.613 28.629 30.097 15 36 22 15 29 29 1 1 1 1 1 1 2678.7 13067 2656 12936 20082 26174 26174 1 LTGADGTPPGFLLK Unmodified 1385.7555 0.7554662 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 0 8 0 1 67.826 67.826 2 8.5784E-10 20605 TMT1-7 123.67 104.4 46.585 88.926 29.941 77.245 40.392 60.675 44 87 36 73 44 58 1 1 1 1 1 1 12043 13068 1575 12937 20083 26175 26175 1 LTGEEVNSCVEVLLEEAK Unmodified 2017.9878 0.98778692 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 79.574 79.574 3 3.7269E-06 25884 TMT1-3 86.479 59.45 15.691 36.631 36.808 21.31 28.834 15.167 15 36 37 22 29 15 1 1 1 1 1 1 3000.4 13069 1185 12938 20084 26176 26176 1 LTGEPLYNAVVWLDLR Unmodified 1857.9989 0.99888437 1775 Q14410 GK2 Glycerol kinase 2 yes yes 0 0 0 0 0 8 0 1 87.634 87.634 2 0.0063749 28218 TMT1-7 49.483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13070 1775 12939 20085 26177 26177 1 LTGMAFR Unmodified 794.41089 0.4108942 472 P04406;P04406-2;O14556 GAPDH;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 0 0 0 0 0 9 0 1 50.147 50.147 2 0.0080175 11803 TMT1-8 139.27 102.71 1489.3 2122.4 1458.4 1323.9 1698.9 2486.5 1406 2112 1527 1320 1764 2378 2 2 2 2 2 2 538350 13071 472 12940 20086 26178;26179 26178 2 LTGPIQVIHLAK Unmodified 1288.7867 0.78670675 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 9 0 1 59.473 59.473 3 0.00031066 15589 TMT1-8 85.258 52.138 99.811 100.27 91.602 80.53 77.128 83.079 94 102 94 80 80 80 1 1 1 1 1 1 57632 13072 126 12941 20087 26180 26180 1 LTGSCSYVLFQNK Unmodified 1515.7392 0.73916421 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 62.139 62.139 3 5.8103E-12 16531 TMT1-8 130.56 98.5 170.02 132.59 166.09 129.94 177.67 165.49 160 138 167 131 181 160 1 1 1 1 1 1 44904 13073 471 12942 20088 26181 26181 1 LTGSLSGWSSPK Unmodified 1218.6245 0.62445203 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 9 0 1 58.259 58.259 2 4.597E-31 15059 TMT1-8 209.85 148.17 53.867 87.774 69.466 89.395 82.73 121.3 51 87 73 87 87 116 1 1 1 1 1 1 11154 13074 2492 12943 20089 26182 26182 1 LTGVFAPR Unmodified 859.49159 0.49158736 1440 P62701;P22090;Q8TD47 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 0 9 0 1 52.51 52.51 2 0.012342 12741 TMT1-8 85.813 42.813 138.83 158.25 157.08 131.18 140.47 150.56 131 160 160 131 145 145 1 1 1 1 1 1 29013 13075 1440 12944 20090 26183 26183 1 LTHFLDQCAR Unmodified 1259.6081 0.60809046 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 47.461 47.461 3 0.00016821 12495 TMT1-6 104.39 99.5 115.19 174.88 148.91 100.64 104.99 128.12 109 174 152 102 109 123 1 1 1 1 1 1 29692 13076 3042 12945 20091 26184 26184 1 LTHVLTGK Unmodified 867.5178 0.51780212 2691 Q9HCN8 SDF2L1 Stromal cell-derived factor 2-like protein 1 yes yes 0 0 0 0 0 9 0 1 44.47 44.47 3 0.0053413 9602 TMT1-8 69.628 36.112 68.541 93.333 123.31 85.897 98.046 136.85 65 94 123 87 102 131 1 1 1 1 1 1 19719 13077 2691 12946 20092 26185 26185 1 LTHVYDLCK Unmodified 1147.5696 0.56957969 880 P24928;P24928-2 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 0 0 0 7 0 1 47.888 47.888 3 0.043704 12706 TMT1-6 46.606 21.814 99.673 99.882 115.16 86.664 83.112 113.82 94 102 116 87 87 109 1 1 1 1 1 1 6049.8 13078 880 12947 20093 26186 26186 1 LTIAEER Unmodified 830.44978 0.44978213 1440 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 0 3 0 1 41.431 41.431 2 0.026964 11775 TMT1-2 92.187 18.212 130.26 175.07 140.29 122.17 207.56 249.92 123 175 145 123 212 240 1 1 1 1 1 1 46481 13079 1440 12948 20094 26187 26187 1 LTIFDEEVDPDEGLFGPGR Unmodified 2104.9953 0.99531514 1951 Q53T59 HS1BP3 HCLS1-binding protein 3 yes yes 0 0 0 0 0 4 0 1 82.777 82.777 3 1.1362E-13 27064 TMT1-3 113.88 108.88 23.444 37.168 37.018 14.989 12.357 46.551 22 37 37 15 14 44 1 2 2 1 2 2 5316.7 13080 1951 12949 20095 26188;26189 26188 2 LTIGEGQQHHLGGAK Unmodified 1544.8059 0.80593865 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 6 3.08 1 1 1 1 36.899 36.899 4 1.3917E-17 8841 TMT1-5 149.3 106.87 2666.9 3806.5 2636.8 2344.8 2027.3 5480 2518 3788 2757 2324 2221 5195 5 5 5 5 5 5 487860 13081 439 12950 20096;20097;20098;20099 26190;26191;26192;26193;26194 26192 5 LTILAAR Unmodified 756.48577 0.48577371 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 9 0 1 52.175 52.175 2 0.01198 12681 TMT1-8 114.72 53.598 130.31 387.11 312.79 239.09 243.93 374.67 125 377 321 240 256 358 1 1 1 1 1 1 55522 13082 1870 12951 20100 26195 26195 1 LTIQGLK Unmodified 771.48544 0.48543935 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 9 0 1 55.413 55.413 2 0.0092791 13853 TMT1-8 125.25 25.186 278.96 612.08 385.64 372.63 409.36 648.17 265 599 407 369 429 619 2 2 2 2 2 2 43515 13083 2492 12952 20101 26196;26197 26196 2 LTISSPLEAHK Unmodified 1194.6608 0.66083754 1850 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 7 0 1 50.562 50.562 3 0.00085802 13722 TMT1-6 88.187 55.581 114.65 283.45 148.35 161.37 248.28 260.48 109 276 160 160 253 251 1 1 1 1 1 1 17418 13084 1850 12953 20102 26198 26198 1 LTIVDTVGFGDQINK Unmodified 1618.8566 0.85663681 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 7 0 1 71.495 71.495 3 0.0028391 21997 TMT1-6 62.377 51.107 37.854 89.103 54.6 58.793 71.604 59.785 36 87 58 58 73 58 1 1 1 1 1 1 8568 13085 2757 12954 20103 26199 26199 1 LTIVHHPGGK Unmodified 1057.6033 0.60326308 2213 Q8NDB2-4;Q8NDB2-3;Q8NDB2-2;Q8NDB2 BANK1 B-cell scaffold protein with ankyrin repeats yes no 0 0 0 0 0 8 0 1 33.262 33.262 4 0.019824 6942 TMT1-7 52.49 24.281 115.63 161.01 85.759 128.09 66.036 129.23 109 160 94 123 73 123 1 1 1 1 1 1 7004.2 13086 2213 12955 20104 26200 26200 1 LTIVSTVGFGDQINK Unmodified 1590.8617 0.86172219 1752 Q14141-2;Q14141-4;Q14141;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 0 8 0 1 69.657 69.657 3 1.2625E-07 21346 TMT1-7 106.14 95.859 61.279 86.985 86.812 40.286 139.96 73.824 58 87 87 44 138 73 1 1 1 1 1 1 9114.9 13087 1752 12956 20105 26201 26201 1 LTLAELNQILYR Unmodified 1445.8242 0.82421447 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 9 0 1 78.086 78.086 2 0.0038872 22825 TMT1-8 77.64 33.323 23.316 13.768 37.059 21.309 28.065 37.575 22 15 36 22 29 36 1 1 1 1 1 1 4129.1 13088 1018 12957 20106 26202 26202 1 LTLDDIER Unmodified 973.50803 0.50802529 656 P11441 UBL4A Ubiquitin-like protein 4A yes yes 0 0 0 0 0 3 0 1 55.525 55.525 2 0.037453 17474 TMT1-2 78.113 27.053 38.147 34.874 51.323 35.34 50.454 36.936 36 36 51 36 51 36 1 1 1 1 1 1 8864.6 13089 656 12958 20107 26203 26203 1 LTLDKLDVK Unmodified 1043.6227 0.62266112 397 P00558 PGK1 Phosphoglycerate kinase 1 yes yes 0 0 0 0 1 5.33 3.09 1 1 1 57.045 57.045 2;3 0.0071926 16217 TMT1-6 77.744 39.658 2854.2 3932.5 2622 2462 2759.3 4077.6 2693 3918 2756 2443 2880 3899 4 4 4 4 4 4 363920 13090 397 12959 20108;20109;20110 26204;26205;26206;26207 26206 4 LTLDTIFVPNTGK Unmodified 1417.7817 0.78168095 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 8.5 0.5 1 1 73.305 73.305 3 2.4258E-06 20910 TMT1-8 102.87 69.464 422.78 530.03 449.19 424.76 516.52 534.25 399 532 464 422 530 515 4 4 4 4 4 4 130050 13091 2959 12960 20111;20112 26208;26209;26210;26211 26210 4 LTLDTIFVPNTGKK Unmodified 1545.8766 0.87664397 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 1 9 0 1 64.897 64.897 4 3.5787E-05 17639 TMT1-8 85.457 53.182 467.82 711.6 481.04 529.03 508.52 658.14 442 706 508 519 531 631 1 1 1 1 1 1 45432 13092 2959 12961 20113 26212 26212 1 LTLEGCSIDADIDSFIQAK Unmodified 2095.0143 0.01433602 182 O43586-2;O43586 PSTPIP1 Proline-serine-threonine phosphatase-interacting protein 1 yes no 0 0 0 0 0 5 0 1 84.645 84.645 3 0.008219 27577 TMT1-4 32.981 23.232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13093 182 12962 20114 26213 26213 1 LTLHGLQQYYVK Unmodified 1461.798 0.79799972 1738;40 O00148;O00148-2;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 0 9 0 1 57.27 57.27 3 8.1908E-10 14610 TMT1-8 142.89 116.24 307.27 447.06 277.28 182.37 408.62 345.45 290 444 290 189 410 335 2 2 2 2 2 2 46439 13094 40;1738 12963 20115 26214;26215 26214 2 LTLIDPETLLPR Unmodified 1379.8024 0.8024164 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 7.33 0.471 2 1 81.286 81.286 2;3 1.5404E-07 25837 TMT1-6 117.09 81.55 122.76 150.79 159.07 98.494 186.73 187.62 116 152 160 102 189 181 3 3 3 3 3 3 30213 13095 2116 12964 20116;20117;20118 26216;26217;26218 26217 3 LTLISEDIK Unmodified 1030.591 0.59102664 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 6 0 2 63.972 63.972 2 0.00032255 19714 TMT1-5 100.02 15.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13096 771 12965 20119;20120 26219;26220 26220 2 LTLLHVLHK Unmodified 1072.6757 0.67569974 876 P24557;P24557-2;P24557-3 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 9 0 1 53.253 53.253 3 0.0064412 13046 TMT1-8 64.711 37.613 99.462 106.85 144.81 116.06 111.32 136.47 94 109 145 116 116 131 1 1 1 1 1 1 10775 13097 876 12966 20121 26221 26221 1 LTLMEEVLLLGLK Unmodified 1470.8731 0.8731385 2649 Q9H4A6;Q9H4A5-2;Q9H4A5 GOLPH3;GOLPH3L Golgi phosphoprotein 3;Golgi phosphoprotein 3-like yes no 0 0 0 0 0 8.5 0.5 1 1 98.734 98.734 3 0.0001095 30478 TMT1-8 90.614 66.322 62.669 81.318 38.298 68.089 93.918 67.676 59 81 43 66 95 66 3 3 3 3 3 3 4367.1 13098 2649 12967 20122;20123 26222;26223;26224 26224 3 LTLSALLDGK Unmodified 1029.607 0.60701105 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 8.5 0.5 2 2 73.067 73.067 2;3 3.1419E-21 22344 TMT1-7 203.29 0 1790.2 2832.2 2207.2 2056.5 2215 3018.6 1694 2810 2290 2040 2307 2891 6 6 6 6 6 6 327960 13099 833 12968 20124;20125;20126;20127 26225;26226;26227;26228;26229;26230 26226 6 LTLSALVDGK Unmodified 1015.5914 0.59136099 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 8 0 1 68.104 68.104 2 5.4189E-05 20777 TMT1-7 145.72 93.936 479.1 1022.9 845.17 629.78 739.37 989.47 456 1005 866 635 767 948 2 2 2 2 2 2 153500 13100 1119 12969 20128 26231;26232 26232 2 LTLSDFLIKPIQR Unmodified 1542.9134 0.91336383 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 1 9 0 1 72.758 72.758 3 2.8149E-09 20726 TMT1-8 112.44 75.293 246.62 234.48 190.36 143.68 241.89 287.31 232 239 196 146 247 276 2 2 2 2 2 2 23174 13101 214 12970 20129 26233;26234 26233 2 LTLTFNR Unmodified 863.4865 0.48650199 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 9 0 1 54.07 54.07 2 0.0061981 13390 TMT1-8 152.39 73.244 426.5 793.83 502.39 477.89 660.9 706.02 404 781 530 476 676 680 1 1 1 1 1 1 60654 13102 1038 12971 20130 26235 26235 1 LTLTFSAQTK Unmodified 1108.6128 0.61282471 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 9 0 1 59.62 59.62 2 2.4015E-12 15630 TMT1-8 179.09 109.27 169.98 156.21 153.59 208.79 209.34 264.79 160 160 160 203 218 254 2 2 2 2 2 2 35494 13103 228 12972 20131 26236;26237 26237 2 LTLTHSK Unmodified 798.45995 0.45995289 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 8 0 1 35.653 35.653 3 0.028714 7964 TMT1-7 60.972 12.185 248.48 260.52 216.88 217.47 186.14 441.34 234 264 225 214 202 419 1 1 1 1 1 1 16624 13104 2223 12973 20132 26238 26238 1 LTLVCESAPGPITMDLTGDLEALKK Oxidation (M) 2687.3762 0.37615477 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 1 0 1 7 0 2 81.056 81.056 4;5 7.0258E-11 26374 TMT1-6 87.565 68.846 176.54 156.11 133.15 132.68 136.45 265.8 166 160 138 131 145 253 3 3 3 3 3 3 13767 13105 1269 12974 20133;20134 26239;26240;26241 26241 209 3 LTLVCESAPGPITMDLTGDLEALKK Unmodified 2671.3812 0.38124014 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 7.5 0.5 2 2 82.698 82.698 3;4;5 2.3639E-20 26395 TMT1-7 116.35 103.16 577.03 800.6 444.6 583.27 471.63 989.65 544 796 482 566 509 941 6 6 6 6 6 6 321880 13106 1269 12974 20135;20136;20137;20138 26242;26243;26244;26245;26246;26247 26246 6 LTLVDTPGFGDSVDCSDCWLPVVK Unmodified 2679.256 0.25603963 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 6 0 1 87.237 87.237 3 1.5067E-07 28741 TMT1-5 68.369 55.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13107 2288 12975 20139 26248 26248 1 LTLWYYSEER Unmodified 1358.6507 0.65066678 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 7 0 1 66.554 66.554 3 0.0011525 20063 TMT1-6 90.142 74.941 38.007 74.418 41.362 35.678 64.034 67.463 36 73 44 36 65 65 1 1 1 1 1 1 5876.3 13108 2525 12976 20140 26249 26249 1 LTLYDIAHTPGVAADLSHIETK Unmodified 2364.2325 0.23252572 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 68.453 68.453 4 2.7739E-37 21426 TMT1-5 152.09 130.25 797.9 1067.3 787.57 588.12 928.14 1091.7 753 1066 815 597 949 1049 2 2 2 2 2 2 133610 13109 1075 12977 20141;20142 26250;26251 26250 2 LTMLNTVSK Unmodified 1005.5529 0.55286699 2501 Q99961;Q99961-3 SH3GL1 Endophilin-A2 yes no 0 0 0 0 0 9 0 1 57.226 57.226 2 0.010255 14640 TMT1-8 92.428 48.659 53.714 118.65 69.027 57.672 85.508 82.84 51 116 73 58 87 80 1 1 1 1 1 1 6792.9 13110 2501 12978 20143 26252 26252 1 LTMQVSSLQR Unmodified 1161.6176 0.61759251 1028 P35659 DEK Protein DEK yes yes 0 0 0 0 0 8 0 1 50.24 50.24 2 0.00076227 13712 TMT1-7 107.55 61.098 54.237 57.505 32.867 53.008 41.25 68.113 51 58 36 51 44 65 1 1 1 1 1 1 5476.7 13111 1028 12979 20144 26253 26253 1 LTMVPPNIAELK Unmodified 1324.7425 0.74245868 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 0 0 0 8.5 0.5 1 1 70.596 70.596 2;3 6.0864E-05 21783 TMT1-7 101.39 60.673 839.96 1087.8 915.2 775.41 1026.5 1481.2 793 1090 942 777 1064 1417 4 4 4 4 4 4 98179 13112 1851 12980 20145;20146 26254;26255;26256;26257;26258 26256 5 LTMVPPNIAELK Oxidation (M) 1340.7374 0.7373733 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 1 0 0 8 0 2 63.567 63.567 3 0.00010446 19083 TMT1-7 76.728 45.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13113 1851 12980 20147;20148 26259;26260 26260 268 2 LTNHEFTYHK Unmodified 1288.62 0.62003536 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 6 0 1 38.009 38.009 4 0.00046214 9379 TMT1-5 97.456 69.443 138.9 142.25 159.12 106.86 148.37 166.33 131 145 160 109 152 160 1 1 1 1 1 1 9666 13114 1786 12981 20149 26261 26261 1 LTNLEEFMAANNNLELVPESLCR Unmodified 2676.2887 0.28873674 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 87.144 87.144 4 0.031233 28651 TMT1-5 31.384 20.829 23.261 44.913 20.004 22.189 35.353 37.367 22 44 22 22 36 36 1 1 1 1 1 1 5031.7 13115 1666 12982 20150 26262 26262 1 LTPEEEEILNK Unmodified 1313.6715 0.6714618 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 0 2.5 0.5 1 1 61.26 61.26 2;3 8.8495E-07 19671 TMT1-2 144.47 107.78 254.4 350.38 227.62 218.94 306.75 278 240 349 240 218 312 269 3 3 3 3 3 3 42084 13116 1417 12983 20151;20152 26263;26264;26265 26265 3 LTPEYLQLMK Unmodified 1234.6631 0.66314572 330 O94905 ERLIN2 Erlin-2 yes yes 0 0 0 0 0 8 0 1 68.946 68.946 2 0.0023989 21071 TMT1-7 68.626 27.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13117 330 12984 20153 26266 26266 1 LTPFMLGALVAMYEHK Unmodified 1819.9365 0.93648381 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 9 0 1 88.548 88.548 3 2.8998E-23 26843 TMT1-8 149.22 112.06 69.209 56.338 42.299 35.455 72.934 52.285 65 58 44 36 73 51 1 1 1 1 1 1 13311 13118 516 12985 20154 26267 26267 1 LTPFTIQENLNLALNSASAIGCHVVNIGAEDLK Unmodified 3521.8188 0.8188181 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 9 0 1 93.405 93.405 4 1.2362E-16 28644 TMT1-8 80.943 64.006 46.418 73.349 71.367 66.978 48.193 60.453 44 73 73 66 51 58 2 2 2 2 2 2 13024 13119 690 12986 20155 26268;26269 26268 2 LTPIHDR Unmodified 850.4661 0.4661009 926 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 0 5 0 1 30.223 30.223 3 0.015853 6160 TMT1-4 72.789 37.296 23.301 36.39 20.504 22.42 21.454 15.378 22 36 22 22 22 15 1 1 1 1 1 1 3130.2 13120 926 12987 20156 26270 26270 1 LTPITYPQGLAMAK Unmodified 1502.8167 0.81668625 1466 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 0 0 0 9 0 1 66.799 66.799 2 2.708E-13 18387 TMT1-8 138.99 106.67 54.15 64.816 41.455 44.706 48.668 76.429 51 65 44 44 51 73 1 1 1 1 1 1 12157 13121 1466 12988 20157 26271 26271 1 LTPITYPQGLAMAK Oxidation (M) 1518.8116 0.81160087 1466 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 1 0 0 9 0 1 61.924 61.924 3 0.00094926 16483 TMT1-8 66.004 41.213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13122 1466 12988 20158 26272 26272 236 1 LTPLQLEIQR Unmodified 1209.7081 0.70812208 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 7 0 1 60.919 60.919 2 0.00024361 17839 TMT1-6 91.095 55.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13123 2162 12989 20159 26273 26273 1 LTPLSHEVISR Unmodified 1250.6983 0.69828568 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 7 0 1 43.992 43.992 3 7.1832E-07 11152 TMT1-6 129 84.652 68.746 117.65 68.272 74.284 76.352 114.02 65 116 73 73 80 109 1 1 1 1 1 1 7628.8 13124 1077 12990 20160 26274 26274 1 LTPRPTAAELEEVLQVNSLIQTQK Unmodified 2677.465 0.46504485 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 7 0 1 75.655 75.655 4 5.7236E-10 23641 TMT1-6 89.365 76.308 68.947 63.164 80.554 41.94 71.829 75.768 65 65 80 44 73 73 1 1 1 1 1 1 12609 13125 2525 12991 20161 26275 26275 1 LTPTEVKDYLAAIA Unmodified 1503.8185 0.81846039 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 1 7 0 1 84.096 84.096 3 0.036332 26906 TMT1-6 49.12 27.657 15.785 36.891 20.854 14.756 21.037 37.776 15 36 22 15 22 36 1 1 1 1 1 1 3519.5 13126 891 12992 20162 26276 26276 1 LTPVLLAK Unmodified 853.56369 0.56368968 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 9 0 1 62.248 62.248 2 0.018078 16608 TMT1-8 80.229 53.267 382.83 584.92 445.37 514.02 431.95 653.92 362 581 467 502 457 625 1 1 1 1 1 1 33651 13127 1720 12993 20163 26277 26277 1 LTPYEVDELRR Unmodified 1389.7252 0.72522871 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 1 4 0 1 48.02 48.02 3 2.3983E-07 13485 TMT1-3 145.91 100.84 192.03 236.43 166.69 144.31 225.24 253.68 181 237 174 145 230 244 1 1 1 1 1 1 36183 13128 2321 12994 20164 26278 26278 1 LTQAQIFDYGEIPNFPR Unmodified 2008.0054 0.005426314 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 6.5 0.5 1 1 75.141 75.141 2;3 9.9406E-36 23401 TMT1-6 186.7 167.41 131.36 190.18 123.01 149.48 146.95 181.29 124 189 131 146 153 174 3 3 3 3 3 3 133320 13129 394 12995 20165;20166 26279;26280;26281 26280 3 LTQDAVAK Unmodified 844.46543 0.46543219 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 5.5 0.5 1 1 41.668 41.668 2 6.5628E-05 10769 TMT1-4 128.38 64.904 53.948 88 55.652 34.836 63.523 83.467 51 87 58 36 65 80 1 1 1 1 1 1 7646.6 13130 2947 12996 20167;20168 26282;26283 26282 2 LTQDEIISK Unmodified 1045.5655 0.56554017 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 5 0 1 52.144 52.144 2 0.00061276 14825 TMT1-4 132.91 90.092 99.498 138.25 112.15 102.58 117.95 174.66 94 138 116 102 123 167 1 1 1 1 1 1 13680 13131 1613 12997 20169 26284 26284 1 LTQDQDVDVK Unmodified 1159.5721 0.57208211 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 3 1 1 1 45.726 45.726 3 0.00010859 13307 TMT1-1 113.63 55.793 276.08 407.97 322.63 289.4 443.23 412.69 261 406 334 290 450 399 3 3 3 3 3 3 43590 13132 956 12998 20170;20171 26285;26286;26287 26285 3 LTQELEILTDR Unmodified 1329.714 0.71399532 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 4 0 1 70.45 70.45 2 2.0474E-08 22310 TMT1-3 121.02 57.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13133 1565 12999 20172 26288 26288 1 LTQEPESIR Unmodified 1071.556 0.55603811 597 P09497-2;P09497 CLTB Clathrin light chain B yes no 0 0 0 0 0 3 0 1 40.047 40.047 2 0.012601 11293 TMT1-2 85.355 36.56 68.808 94.078 77.682 64.798 85.986 59.374 65 94 80 65 87 58 1 1 1 1 1 1 16184 13134 597 13000 20173 26289 26289 1 LTQEPESIRK Unmodified 1199.651 0.65100113 597 P09497-2;P09497 CLTB Clathrin light chain B yes no 0 0 0 0 1 5 0 1 38.596 38.596 3 0.012135 9489 TMT1-4 66.498 34 275.49 429.02 402.85 257.64 192.88 465.67 261 427 408 261 211 442 1 1 1 1 1 1 19879 13135 597 13001 20174 26290 26290 1 LTQIRQIYHTELEK Acetyl (N-term) 1812.9734 0.9733979 1070 P40426-2;P40426-5;P40426 PBX3 Pre-B-cell leukemia transcription factor 3 yes no 1 0 0 0 1 2 0 1 63.483 63.483 3 0.00067479 20213 TMT1-1 49.12 13.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13136 1070 13002 20175 26291 26291 1 LTQLNLDR Unmodified 971.53999 0.53999412 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 3.5 2.5 1 1 50.499 50.499 2 0.003179 14120 TMT1-5 132.84 36.815 1289.2 1836.7 1595.3 1378.3 1741.2 2159.1 1219 1833 1639 1378 1796 2072 3 3 3 3 3 3 332600 13137 535 13003 20176;20177 26292;26293;26294 26293 3 LTQLNLDRCELTK Unmodified 1602.8399 0.83994089 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 1 7 0 1 54.229 54.229 3 0.0018274 15167 TMT1-6 75.764 49.616 702.36 916.99 741.79 614.7 589.83 1069.4 663 918 765 613 626 1019 1 1 1 1 1 1 47712 13138 535 13004 20178 26295 26295 1 LTQLYEQAR Unmodified 1120.5877 0.58767259 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5.6 2.65 1 1 1 1 1 49.975 49.975 2 2.6021E-20 13943 TMT1-5 201.21 145.31 1926.4 2633.7 2583.8 1942.2 2102.2 2771.3 1822 2638 2623 1954 2186 2656 5 5 5 5 5 5 790050 13139 2112 13005 20179;20180;20181;20182;20183 26296;26297;26298;26299;26300;26301 26298 6 LTQLYYLLAK Unmodified 1224.7118 0.71181048 1305 P54922 ADPRH [Protein ADP-ribosylarginine] hydrolase yes yes 0 0 0 0 0 9 0 1 81.889 81.889 2 0.0047782 24297 TMT1-8 92.428 56.232 46.482 57.338 74.138 26.337 50.062 60.399 44 58 73 29 51 58 1 1 1 1 1 1 7615.8 13140 1305 13006 20184 26302 26302 1 LTQNVGLLGLLK Unmodified 1267.7864 0.7863724 2305 Q92608;Q92608-2 DOCK2 Dedicator of cytokinesis protein 2 yes no 0 0 0 0 0 9 0 1 77.037 77.037 2 9.1216E-07 22437 TMT1-8 118.48 76.374 53.981 80.537 56.418 27.685 34.551 53.38 51 80 58 29 36 51 1 1 1 1 1 1 6449 13141 2305 13007 20185 26303 26303 1 LTQTLAIER Unmodified 1043.5975 0.597509 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 6 0 1 49.965 49.965 2 0.009347 14124 TMT1-5 89.827 44.147 99.258 179.67 117.29 101.26 171.96 157.13 94 177 123 102 174 152 1 1 1 1 1 1 19162 13142 2288 13008 20186 26304 26304 1 LTQVSVLQYGSITTIDVPWNVVPEK Unmodified 2785.4902 0.49019697 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 2 88.045 88.045 4;5 4.3186E-08 28419 TMT1-7 76.691 62.819 138.85 144.29 164.88 144.9 199.71 204.3 131 147 167 145 204 197 5 5 5 5 5 5 29610 13143 471 13009 20187;20188 26305;26306;26307;26308;26309 26306 5 LTSAIAK Unmodified 702.42759 0.42759012 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 8 0 1 45.819 45.819 2 0.021413 11936 TMT1-7 96.51 46.471 387.45 808.24 561.28 501.11 634.56 619.36 368 793 586 500 649 598 1 1 1 1 1 1 47753 13144 2116 13010 20189 26310 26310 1 LTSAVSSLPELLEK Unmodified 1485.829 0.82902508 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 76.737 76.737 3 0.0012486 23996 TMT1-6 69.456 36.958 54.161 42.182 58.725 27.547 34.557 53.38 51 44 58 29 36 51 1 1 1 1 1 1 10167 13145 2273 13011 20190 26311 26311 1 LTSDDVKEQIYK Unmodified 1437.7351 0.73512469 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 1 6 0 1 52.271 52.271 3 0.0024375 15039 TMT1-5 76.588 45.062 222.22 370.95 208.65 207.81 202.93 331.07 210 366 223 205 214 316 1 1 1 1 1 1 24445 13146 1427 13012 20191 26312 26312 1 LTSDLTFAYER Unmodified 1314.6456 0.6455814 523 P06865 HEXA Beta-hexosaminidase subunit alpha yes yes 0 0 0 0 0 5 0 1 61.852 61.852 2 0.0089603 18637 TMT1-4 79.16 49.417 53.674 118.54 75.889 73.81 77.437 83.07 51 116 80 73 80 80 1 1 1 1 1 1 10010 13147 523 13013 20192 26313 26313 1 LTSDSTVYDYAGK Unmodified 1418.6565 0.65654002 91 O14548 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 54.749 54.749 3 0.016306 15858 TMT1-4 52.071 22.383 99.605 146.1 87.445 112.12 96.071 159.29 94 145 94 109 102 152 1 1 1 1 1 1 17030 13148 91 13014 20193 26314 26314 1 LTSEEVFDLDGIPR Unmodified 1589.7937 0.7937022 741 P16298-2;P16298-3;P16298;P16298-4 PPP3CB Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform yes no 0 0 0 0 0 4 0 1 71.02 71.02 3 8.4204E-06 22507 TMT1-3 99.941 71.396 31.961 20.906 20.739 37.022 57.962 29.26 30 22 22 36 58 29 1 1 1 1 1 1 7953.8 13149 741 13015 20194 26315 26315 1 LTSEPQPQR Unmodified 1054.5407 0.5407224 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 4 0 1 32.369 32.369 2 0.00043371 7260 TMT1-3 137.9 89.149 46.605 42.57 65.986 34.909 26.89 53.599 44 44 65 36 29 51 1 1 1 1 1 1 6414 13150 1378 13016 20195 26316 26316 1 LTSFIGAIAIGDLVK Unmodified 1516.8865 0.88648038 1504 P78371 CCT2 T-complex protein 1 subunit beta yes yes 0 0 0 0 0 9 0 1 90.409 90.409 3 1.3303E-16 27630 TMT1-8 130.72 103.99 346.99 400.16 312.98 338.38 310.64 492.16 327 403 327 332 328 470 3 3 3 3 3 3 77438 13151 1504 13017 20196 26317;26318;26319 26318 3 LTSIIFAEDITTGQVLR Unmodified 1876.0306 0.030578432 2259 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 0 7.5 0.5 1 1 82.776 82.776 3 4.5001E-06 26362 TMT1-6 88.992 69.153 77.288 85.646 102.3 56.924 77.92 91.585 73 87 102 59 80 88 3 3 3 3 3 3 9713.9 13152 2259 13018 20197;20198 26320;26321;26322 26320 3 LTSLLEETLNK Unmodified 1259.6973 0.69728262 2870 Q9UHY1 NRBP1 Nuclear receptor-binding protein yes yes 0 0 0 0 0 7 0 1 76.646 76.646 3 5.4211E-05 23964 TMT1-6 104.43 87.802 23.18 44.688 33.788 53.101 33.382 53.413 22 44 36 51 36 51 1 1 1 1 1 1 7254.3 13153 2870 13019 20199 26323 26323 1 LTSLNVK Unmodified 773.4647 0.46470391 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 no no 0 0 0 0 0 8 0 1 50.349 50.349 2 0.0076903 13707 TMT1-7 124.83 58.153 717.59 1223.4 808.47 743.68 901.53 958.19 679 1208 849 740 926 923 2 2 2 2 2 2 68877 13154 901 13020 20200 26324;26325 26324 2 LTSLPLGALR Unmodified 1039.639 0.63897988 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 9 0 1 64.372 64.372 2 9.3993E-18 17386 TMT1-8 191.78 131.13 1670.9 2141.8 2108.8 1638 2056.7 2278 1579 2152 2143 1649 2113 2192 2 2 2 2 2 2 684230 13155 535 13021 20201 26326;26327 26326 2 LTSLVPFVDAFQLER Unmodified 1733.9352 0.93522148 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 8.5 0.5 1 1 89.84 89.84 2;3 1.6006E-05 27425 TMT1-8 79.771 48.943 39.27 43.574 35.562 37.247 57.146 52.735 37 44 37 37 58 51 2 2 2 2 2 2 15481 13156 1754 13022 20202;20203 26328;26329;26330 26330 3 LTSSLTTK Unmodified 849.48075 0.48074791 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 8 0 1 46.156 46.156 2 0.002525 12102 TMT1-7 136.27 111.35 322.98 438.42 348.87 285.4 457.03 412.29 305 438 360 288 463 399 1 1 1 1 1 1 40815 13157 851 13023 20204 26331 26331 1 LTSTVMLWLQTNK Oxidation (M) 1549.8174 0.81741453 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 1 0 0 9 0 1 74.297 74.297 3 6.2059E-06 21346 TMT1-8 101.53 74.563 54.037 49.392 73.497 50.58 41.618 60.64 51 51 73 51 44 58 1 1 1 1 1 1 8543 13158 1144;1145 13024 20205 26332 26332 205 1 LTSTVMLWLQTNK Unmodified 1533.8225 0.82249991 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 9 0 1 81.468 81.468 3 1.5936E-16 24105 TMT1-8 151.55 126.23 333.78 390.41 376.73 257.97 315.76 542.11 315 394 382 262 331 517 2 2 2 2 2 2 81641 13159 1144;1145 13024 20206 26333;26334 26333 2 LTTAASLLDVFVLTR Unmodified 1618.9294 0.92940782 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 9 0 1 92.235 92.235 3 1.0384E-05 28208 TMT1-8 86.497 57.156 15.897 22.093 14.541 6.367 22.192 15.357 15 22 15 7 22 15 1 1 1 1 1 1 4732.1 13160 2859 13025 20207 26335 26335 1 LTTDFNVIVEALSK Unmodified 1548.8399 0.83992412 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 0 8 0 1 90.278 90.278 3 9.5694E-15 29180 TMT1-7 134.91 122.77 122.79 183.24 127.3 136.32 135.65 162.43 116 182 134 134 141 156 2 2 2 2 2 2 49071 13161 498 13026 20208 26336;26337 26337 2 LTTEEVIK Unmodified 931.52261 0.52261272 142 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 0 5 0 1 50.218 50.218 2 0.0013103 14091 TMT1-4 107.01 50.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13162 142 13027 20209 26338 26338 1 LTTLELLEVR Unmodified 1185.6969 0.69688869 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 71.126 71.126 2 0.019086 22491 TMT1-5 76.345 34.058 145.74 204.62 219.46 149.27 201.4 179.74 138 205 221 152 205 174 1 1 1 1 1 1 33286 13163 1546 13028 20210 26339 26339 1 LTTLIELLLPK Unmodified 1252.8006 0.80062548 1272 P52630-4;P52630 STAT2 Signal transducer and activator of transcription 2 yes no 0 0 0 0 0 9 0 1 99.943 99.943 3 0.0091946 30993 TMT1-8 57.347 37.735 14.708 44.141 37.031 6.3032 29.011 30.086 14 43 37 7 29 29 1 2 2 1 2 2 1962.8 13164 1272 13029 20211 26340;26341 26340 2 LTTLPSDFCGLTHLVK Unmodified 1800.9444 0.94440596 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 8 0 1 71.401 71.401 3 2.8997E-05 22053 TMT1-7 82.259 45.814 46.441 57.226 81.006 42.356 48.263 91.365 44 58 80 44 51 87 1 1 1 1 1 1 10284 13165 2362 13030 20212 26342 26342 1 LTTPTYGDLNHLVSATMSGVTTCLR Oxidation (M) 2723.3259 0.32585053 537;1493 P07437;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 1 0 0 8 0 1 69.049 69.049 4 2.133E-10 21115 TMT1-7 80.002 67.699 46.563 81.309 40.166 52.287 56.454 52.755 44 80 44 51 58 51 1 1 1 1 1 1 5515.7 13166 537;1493 13031 20213 26343 26343 94 1 LTTPTYGDLNHLVSATMSGVTTCLR Unmodified 2707.3309 0.33093591 537;1493 P07437;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 0 9 0 2 78.782 78.782 3;4 9.0395E-40 23148 TMT1-8 145.63 122.3 146.04 211.96 161.41 130.81 146.45 220.75 138 211 167 131 153 211 3 3 3 3 3 3 186570 13167 537;1493 13031 20214;20215 26344;26345;26346 26346 3 LTTPTYGDLNHLVSLTMSGITTSLR Oxidation (M) 2706.3898 0.38983099 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 9 0 1 77.112 77.112 3 2.5172E-07 22465 TMT1-8 68.192 52.791 23.268 52.49 12.29 15.12 28.862 22.628 22 51 15 15 29 22 1 1 1 1 1 1 8880.6 13168 2650 13032 20216 26347 26347 310 1 LTTPTYGDLNHLVSLTMSGITTSLR Unmodified 2690.3949 0.39491637 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 9 0 2 87.216 87.216 3;4 6.1122E-23 26387 TMT1-8 108.64 81.886 214.75 277.69 280.35 279.3 300.86 368.78 203 279 287 276 312 354 3 3 3 3 3 3 344010 13169 2650 13032 20217;20218 26348;26349;26350 26349 3 LTTSPAQNAQQLHER Unmodified 1692.8543 0.8543454 2301 Q92556 ELMO1 Engulfment and cell motility protein 1 yes yes 0 0 0 0 0 5 0 1 35.19 35.19 3 1.4276E-17 8119 TMT1-4 150.39 131.15 38.151 43.521 43.215 35.681 58.024 29.258 36 44 44 36 58 29 1 1 1 1 1 1 9076 13170 2301 13033 20219 26351 26351 1 LTTVCPTSKPQTQGLAK Unmodified 1828.9717 0.97168334 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 1 9 0 2 47.528 47.528 3;4 2.0387E-40 10805 TMT1-8 177.3 140.26 188.41 281.96 194.94 177.73 218.5 252.8 178 280 204 177 225 243 2 2 2 2 2 2 63396 13171 673 13034 20220;20221 26352;26353 26353 2 LTVADALEPVQFEDGQK Unmodified 1858.9313 0.93125832 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 4 0 1 71.734 71.734 3 1.4051E-10 22780 TMT1-3 115.38 90.586 300.18 392.63 252.1 311.65 297.76 415.77 283 392 269 304 312 398 3 3 3 3 3 3 40617 13172 635 13035 20222 26354;26355;26356 26355 3 LTVAEGK Unmodified 716.40685 0.40685468 1872 Q15762 CD226 CD226 antigen yes yes 0 0 0 0 0 6 0 1 42.224 42.224 2 0.01822 11034 TMT1-5 98.997 27.654 184.07 272.41 210.96 244.5 220.65 283.66 174 271 221 239 231 272 1 1 1 1 1 1 44625 13173 1872 13036 20223 26357 26357 1 LTVAENEAETK Unmodified 1203.5983 0.59829686 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 3 0.816 1 1 1 46.165 46.165 3 0.00010134 13753 TMT1-2 103.08 52.889 168.47 257.61 140.3 200.78 212.09 195.42 159 255 153 195 218 189 3 3 3 3 3 3 23451 13174 543 13037 20224;20225;20226 26358;26359;26360 26359 3 LTVDEAVR Unmodified 901.4869 0.48689592 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3 0.816 1 1 1 43.573 43.573 2 0.00089434 11587 TMT1-3 147.04 62.54 477.37 523.75 477.4 328.14 508.43 472.65 450 530 486 335 516 457 4 4 4 4 4 4 104670 13175 1833 13038 20227;20228;20229 26361;26362;26363;26364 26364 4 LTVEDLEK Unmodified 945.50188 0.50187728 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 4 0 1 56.614 56.614 2 0.00069142 16847 TMT1-3 148.99 67.029 161.61 293.74 361.9 230.48 313.71 242.62 154 292 361 236 318 236 1 1 1 1 1 1 46884 13176 1868 13039 20230 26365 26365 1 LTVEDLEKER Unmodified 1230.6456 0.6455814 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 1 3.5 1.12 1 1 1 1 49.505 49.505 3 3.4717E-07 14029 TMT1-3 163.83 126.65 1490.1 1984.3 1440.8 1297.1 1667.2 1772.1 1406 1982 1502 1294 1709 1707 5 5 5 5 5 5 229070 13177 1868 13040 20231;20232;20233;20234 26366;26367;26368;26369;26370 26369 5 LTVEDPVTVEYITR Unmodified 1633.8563 0.85630246 108 O14818;O14818-2;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 0 0 0 0 0 4 0 1 65.436 65.436 2 7.5475E-17 20312 TMT1-3 152.55 117.14 38.109 43.404 50.413 44.294 42.164 53.163 36 44 51 44 44 51 1 1 1 1 1 1 19685 13178 108 13041 20235 26371 26371 1 LTVEEAVR Unmodified 915.50255 0.50254598 1833;2935 Q9UPN3;Q9UPN3-5;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 MACF1;PLEC Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Plectin no no 0 0 0 0 0 3.5 0.5 1 1 44.241 44.241 2 0.0028031 11925 TMT1-3 134.81 49.451 278.61 412.15 253.82 273.48 287.32 526.93 263 409 270 269 304 502 2 2 2 2 2 2 67499 13179 2935;1833 13042 20236;20237 26372;26373 26373 2 LTVENSPK Unmodified 886.476 0.47599688 181 O43583 DENR Density-regulated protein yes yes 0 0 0 0 0 6 0 1 41.292 41.292 3 0.01297 10626 TMT1-5 69.825 25.515 100.11 84.9 54.886 50.996 78.486 83.04 94 87 58 51 80 80 1 1 1 1 1 1 11528 13180 181 13043 20238 26374 26374 1 LTVGAAQVPAQLLVGALR Unmodified 1776.0622 0.062153332 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 9 0 1 78.75 78.75 3 0.00073312 23052 TMT1-8 57.173 26.301 99.788 115.31 82.784 88.182 105.01 144.11 94 116 87 87 109 138 2 2 2 2 2 2 12231 13181 568 13044 20239 26375;26376 26375 2 LTVGGPWGQSQEK Unmodified 1385.6939 0.69392858 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 7 0 2 55.507 55.507 2;3 9.3009E-11 15690 TMT1-6 142.47 98.161 206.91 407.88 225.14 251.11 289.16 350.99 196 400 242 247 299 337 2 2 2 2 2 2 37170 13182 126 13045 20240;20241 26377;26378 26378 2 LTVGLTR Unmodified 758.46504 0.46503826 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 8 0 1 45.919 45.919 2 0.037583 11982 TMT1-7 87.284 9.7881 300.1 454.1 394.47 287.72 363.2 400.05 284 452 403 291 373 385 1 1 1 1 1 1 27161 13183 442 13046 20242 26379 26379 1 LTVLPPELGNLDLTGQK Unmodified 1807.0091 0.0091147084 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 6.33 2.43 1 3 2 79.308 79.308 2;3;4 1.3195E-35 24938 TMT1-6 184.8 163.85 2248.3 2710.6 2544.4 2056.8 2408.2 2753 2122 2730 2597 2062 2483 2647 11 12 12 12 12 12 508510 13184 1851 13047 20243;20244;20245;20246;20247;20248 26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390;26391 26383 12 LTVNEAVK Unmodified 872.49673 0.49673232 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 45.827 45.827 2 0.0058762 12493 TMT1-5 112.84 50.642 249.68 416.41 242.95 247.84 290.4 349.89 236 411 259 245 300 336 1 1 1 1 1 1 28972 13185 1833 13048 20249 26392 26392 1 LTVPFLLLQGSADR Unmodified 1528.8613 0.86132826 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 9 0 1 81.271 81.271 3 2.1887E-12 24099 TMT1-8 124.24 88.694 84.697 101.04 106.55 110.03 88.304 144.59 80 102 109 108 94 138 2 2 2 2 2 2 51041 13186 2482 13049 20250 26393;26394 26394 2 LTVSSLQESGLK Unmodified 1260.6925 0.6925316 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.75 2.77 1 2 1 58.014 58.014 2;3 1.4034E-84 16573 TMT1-6 261.52 156.32 1414.5 2240.4 2017.4 1717.2 2087.7 1908.3 1340 2227 2066 1717 2134 1846 4 4 4 4 4 4 733740 13187 831 13050 20251;20252;20253;20254 26395;26396;26397;26398 26396 4 LTVTSQNLQLENLR Unmodified 1627.8893 0.88933392 468 P04233-2;P04233;P04233-3 CD74 HLA class II histocompatibility antigen gamma chain yes no 0 0 0 0 0 7 0 1 59.715 59.715 3 7.9502E-09 17363 TMT1-6 101.43 77.823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13188 468 13051 20255 26399 26399 1 LTVYLGK Unmodified 792.47454 0.47454032 1179;990 P49407-2;P49407;P32121-5;P32121-2;P32121;P32121-3;P32121-4 ARRB1;ARRB2 Beta-arrestin-1;Beta-arrestin-2 no no 0 0 0 0 0 9 0 1 58.847 58.847 2 0.0094506 15229 TMT1-8 124.37 28.753 689.64 705.51 714.23 499.42 530.68 874.97 650 718 723 505 558 835 2 2 2 2 2 2 108600 13189 1179;990 13052 20256 26400;26401 26400 2 LTVYTTLIDVTK Unmodified 1365.7755 0.77553294 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 8 0 1 74.9 74.9 2 6.4338E-25 23380 TMT1-7 194.17 151.57 130.19 189.97 140.41 99.35 142.19 143.05 123 189 145 101 145 138 2 2 2 2 2 2 22997 13190 1714 13053 20257 26402;26403 26402 2 LTWASHEK Unmodified 970.48723 0.48723027 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 5.33 3.09 1 1 1 41.016 41.016 2;3 0.00085763 9851 TMT1-7 125.16 52.553 1032.9 1510.5 1138.1 1106.1 1391.6 1340.8 976 1503 1186 1098 1423 1295 3 3 3 3 3 3 107830 13191 509 13054 20258;20259;20260 26404;26405;26406 26406 3 LTWHSCPEDEAQ Unmodified 1471.6038 0.60379294 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 0 4 0 1 46.332 46.332 2 2.8029E-07 12798 TMT1-3 125.68 114.19 38.041 58.325 49.16 52.322 26.089 53.622 36 58 51 51 29 51 1 1 1 1 1 1 18443 13192 1681 13055 20261 26407 26407 1 LTWLEASEIEDEEEKVSR Unmodified 2162.0379 0.037908234 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 4 0 1 67.494 67.494 3 1.3335E-24 21145 TMT1-3 145.54 124.92 77.033 171.28 72.585 74.297 61.965 76.05 73 167 80 73 65 73 1 1 1 1 1 1 14931 13193 2440 13056 20262 26408 26408 1 LTWLQNMAEK Unmodified 1232.6223 0.62234354 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 9 0 1 69.855 69.855 2 0.00036155 19631 TMT1-8 121.83 72.479 30.725 35.635 35.712 21.257 35.103 45.902 29 36 36 22 36 44 1 1 1 1 1 1 2594.4 13194 2223 13057 20263 26409 26409 1 LTYAYFAGGDAGDAFDGFDFGDDPSDK Unmodified 2833.1668 0.16675015 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5 0.707 1 2 1 86.692 86.692 4;5 1.8262E-11 28366 TMT1-4 82.639 75.017 376.57 417.31 377.37 337.46 398.62 368.12 355 422 386 335 408 356 10 10 9 9 10 10 113590 13195 439 13058 20264;20265;20266;20267 26410;26411;26412;26413;26414;26415;26416;26417;26418;26419 26412 10 LTYLGCASVNAPR Unmodified 1420.7133 0.71328381 3004 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3;Q9Y3P9-4 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 8 0 1 53.65 53.65 3 0.003904 15049 TMT1-7 48.112 23.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13196 3004 13059 20268 26420 26420 1 LTYTAEVSVPK Unmodified 1206.6496 0.64960415 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 6.33 0.471 2 1 55.561 55.561 2;3 1.8838E-24 16315 TMT1-5 204.52 146.56 268.63 404.34 315.52 260.39 323.38 377.73 254 402 326 261 333 363 3 3 3 3 3 3 74972 13197 608 13060 20269;20270;20271 26421;26422;26423 26421 3 LVAAPLFELYDNAPGYGPIISSLPQLLSR Unmodified 3113.6801 0.680123 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 9 0 1 103.29 103.29 4 2.257E-19 32245 TMT1-8 89.565 79.849 16.88 33.64 19.959 14.801 21.511 23.904 16 33 21 15 22 23 3 3 3 3 3 3 13010 13198 204 13061 20272 26424;26425;26426 26425 3 LVAASQAALGL Unmodified 1012.5917 0.59169534 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 7.5 0.5 1 1 73.777 73.777 2 1.3452E-06 22953 TMT1-7 140.09 115.75 355.89 439.5 406.31 278.13 370.46 475.52 336 442 413 283 382 456 5 5 5 5 5 5 393690 + 13199 28 13062 20273;20274 26427;26428;26429;26430;26431 26430 5 LVAEDLSQDCFWTK Unmodified 1710.7923 0.792322 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 6 0 2 72.444 72.444 3;4 2.6765E-07 23039 TMT1-5 105.14 88.957 177.39 277.55 248.61 218.96 238.98 271.41 168 276 255 218 247 261 3 3 3 3 3 3 60193 13200 228 13063 20275;20276 26432;26433;26434 26433 3 LVAEFTTSLTNFQK Unmodified 1597.8352 0.83517309 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 9 0 2 76.801 76.801 3;4 4.8538E-20 22309 TMT1-8 161.25 136.4 206.69 367.33 297.27 216.88 253.72 301.9 196 363 305 219 262 290 3 3 3 3 3 3 39054 13201 147 13064 20277;20278 26435;26436;26437 26435 3 LVAEGNLYSDK Unmodified 1207.6085 0.60846762 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 53.23 53.23 3 0.0050416 15302 TMT1-4 68.069 52.529 92.155 131.68 89.414 88.195 83.298 106.36 87 131 94 87 87 102 1 1 1 1 1 1 11298 13202 651 13065 20279 26438 26438 1 LVAGEMGQNEPDQGGQR Unmodified 1784.8112 0.81115996 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 3 0 1 43.528 43.528 3 1.1405E-05 12693 TMT1-2 84.41 78.83 46.6 73.857 40.266 60.077 48.767 52.974 44 73 44 58 51 51 1 1 1 1 1 1 8487.7 13203 2485 13066 20280 26439 26439 1 LVAIVDPHIK Unmodified 1103.6703 0.67028001 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 7 0 1 56.798 56.798 3 0.020381 16268 TMT1-6 54.608 14.606 84.648 100.9 114.84 94.06 97.671 136.86 80 102 116 94 102 131 1 1 1 1 1 1 43545 13204 1792 13067 20281 26440 26440 1 LVAIVDVIDQNR Unmodified 1353.7616 0.76161421 1231 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 0 6.67 0.471 1 2 75.159 75.159 2;3 5.6225E-10 24104 TMT1-5 155.15 116.19 362.24 532.69 343.32 375.91 485.53 436 342 529 364 371 495 422 6 6 6 6 6 6 66185 13205 1231 13068 20282;20283;20284 26441;26442;26443;26444;26445;26446 26442 6 LVALLNTLDR Unmodified 1126.671 0.67100829 1838 Q15257-2;Q15257;Q15257-3 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 9 0 1 75.898 75.898 2 9.885E-18 22019 TMT1-8 191.45 106.95 292.61 355.21 293.39 213.33 338.26 373.04 276 357 301 217 345 359 2 2 2 2 2 2 47177 13206 1838 13069 20285 26447;26448 26448 2 LVALSEPALALLGLGAPPAR Unmodified 1928.1459 0.14588296 2553 Q9BVL4 SELO Selenoprotein O yes yes 0 0 0 0 0 9 0 1 92.379 92.379 3 4.2856E-13 28268 TMT1-8 92.633 79.866 7.3235 31.343 4.9517 15.823 14.721 7.0419 7 30 7 15 15 7 1 1 1 1 1 1 3156.1 13207 2553 13070 20286 26449 26449 1 LVAQDNFGYDLAAVEAAK Unmodified 1893.9472 0.94724273 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5.5 0.5 1 1 73.884 73.884 3 7.1837E-19 23414 TMT1-4 108.49 94.758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13208 651 13071 20287;20288 26450;26451 26450 2 LVAQDYLQETLGQVVR Unmodified 1830.984 0.98396259 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 7 0 1 77.937 77.937 3 4.0166E-08 24494 TMT1-6 83.106 45.512 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13209 2131 13072 20289 26452 26452 1 LVAQLYK Unmodified 833.50109 0.50108942 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 9 0 1 55.307 55.307 2 0.0091428 13835 TMT1-8 145.87 81.004 310.43 581.06 714.27 393.26 363.58 552.47 296 577 710 405 383 528 1 1 1 1 1 1 118420 13210 271 13073 20290 26453 26453 1 LVASAEQLLK Unmodified 1070.6336 0.63356015 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 7 0 1 67.277 67.277 2 4.8466E-14 20312 TMT1-6 182.65 103.53 99.549 145.95 96.911 94.159 149.25 157.77 94 145 102 94 152 152 1 1 1 1 1 1 18461 13211 2782 13074 20291 26454 26454 1 LVASMEEAR Unmodified 1004.4961 0.4960804 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 45.738 45.738 2 0.0071724 12553 TMT1-3 93.429 50.559 130.14 190.92 147.24 114.87 166.93 285.19 123 190 152 116 174 272 1 1 1 1 1 1 21906 13212 1833 13075 20292 26455 26455 1 LVAYYTLIGASGQR Unmodified 1510.8144 0.81437807 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 9 0 1 68.445 68.445 3 0.00057891 19013 TMT1-8 65.329 39.205 38.096 66.031 33.511 28.889 43.128 45.673 36 65 36 29 44 44 1 1 1 1 1 1 9091.8 13213 409 13076 20293 26456 26456 1 LVCGMVSYLNDLPSQR Unmodified 1850.9019 0.90188922 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 8 0 1 73.945 73.945 3 0.00069109 23036 TMT1-7 53.565 32.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13214 1824 13077 20294 26457 26457 1 LVCGSHSFIK Unmodified 1146.5856 0.5855641 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 9 0 1 45.759 45.759 3 0.00076163 10143 TMT1-8 91.658 45.94 172.75 189.28 200.76 173.68 241.37 231.9 163 192 204 174 246 224 1 1 1 1 1 1 16645 13215 1079 13078 20295 26458 26458 1 LVCPADNLR Unmodified 1056.5386 0.53861391 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 45.456 45.456 2 0.0018483 12282 TMT1-5 111.82 74.979 167.21 277.83 336.22 220.42 290.46 293.39 159 277 336 225 297 283 2 2 2 2 2 2 56942 13216 471 13079 20296;20297 26459;26460 26460 2 LVCSGLLK Unmodified 888.51027 0.5102739 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 0 9 0 1 56.853 56.853 2 0.012777 14457 TMT1-8 84.916 20.079 115.04 166.92 180.21 113.09 157.27 142.62 109 167 181 116 160 138 1 1 1 1 1 1 13495 13217 2202 13080 20298 26461 26461 1 LVCYNNK Unmodified 909.43784 0.43783723 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 7.5 0.5 1 1 42.766 42.766 2 7.5462E-08 10648 TMT1-7 172.15 107.59 292.14 421.9 316.1 269.68 292.43 413.79 276 420 328 269 305 396 2 2 2 2 2 2 38017 13218 3046 13081 20299;20300 26462;26463 26463 2 LVDADGPLAR Unmodified 1025.5506 0.55055881 101 O14672;O14672-2 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes no 0 0 0 0 0 4 0 1 49.812 49.812 2 0.00026588 14164 TMT1-3 125.98 69.09 198.67 306.89 253.24 218.85 230.06 287.65 188 305 261 218 239 276 2 2 2 2 2 2 61237 13219 101 13082 20301 26464;26465 26464 2 LVDELMEAPGDVEALAPPVR Unmodified 2120.0824 0.082356006 1168 P48960-2;P48960-3;P48960 CD97 CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta yes no 0 0 0 0 0 4 0 1 83.135 83.135 3 7.7658E-07 27226 TMT1-3 81.723 64.504 23.33 29.998 20.882 22.541 13.863 23.056 22 30 22 22 15 22 1 1 1 1 1 1 3097.7 13220 1168 13083 20302 26466 26466 1 LVDEYSLNAGK Unmodified 1207.6085 0.60846762 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5 0 1 55.786 55.786 3 3.6739E-07 16316 TMT1-4 135.86 107.65 330.19 489.96 355.54 381.18 340.66 505.16 312 487 373 374 359 483 2 2 2 2 2 2 58618 13221 787 13084 20303 26467;26468 26468 2 LVDFGFAK Unmodified 895.48035 0.48035398 1742 Q13976-2;Q13976;Q13976-3;Q13237-2;Q13237 PRKG1;PRKG2 cGMP-dependent protein kinase 1;cGMP-dependent protein kinase 2 yes no 0 0 0 0 0 8 0 1 67.838 67.838 2 0.022983 20592 TMT1-7 86.833 56.164 122.81 200.58 108.26 103.22 96.48 159.28 116 198 116 102 102 152 1 1 1 1 1 1 30521 13222 1742 13085 20304 26469 26469 1 LVDKFLEDVK Unmodified 1204.6703 0.67033959 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 1 7 0 1 67.41 67.41 3 0.0083659 20407 TMT1-6 73.781 24.431 130.43 150.7 133.36 140.39 132.46 158.25 123 152 138 138 138 152 1 1 1 1 1 1 11390 13223 407 13086 20305 26470 26470 1 LVDQNIFSFYLSR Unmodified 1600.8249 0.82494275 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 9 0 1 81.358 81.358 3 1.189E-13 24151 TMT1-8 143.55 110.27 60.813 148.29 113.18 94.573 75.676 106.57 58 145 117 94 80 102 2 2 2 2 2 2 38639 13224 533 13087 20306 26471;26472 26472 2 LVDQNLNK Unmodified 942.51345 0.51344502 217 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 0 6 0 1 45.63 45.63 2 0.0059993 12440 TMT1-5 111.17 76.343 61.576 64.066 56.359 50.351 108.07 105.65 58 65 58 51 109 102 1 1 1 1 1 1 7863.1 13225 217 13088 20307 26473 26473 1 LVDQSGPPHEPK Unmodified 1302.6568 0.65681479 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 4 0 1 37.675 37.675 3 0.00048496 9407 TMT1-3 85.271 76.542 108.02 129.93 129.6 85.251 112.48 143.9 102 131 131 87 116 138 1 1 1 1 1 1 8305.8 13226 1319 13089 20308 26474 26474 1 LVDSCCQHLEK Unmodified 1387.6224 0.6224199 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 5 0 1 40.306 40.306 3 3.7913E-08 10169 TMT1-4 113.24 78.555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13227 161 13090 20309 26475 26475 1 LVDVICEK Unmodified 974.51067 0.51066783 365;808 O95716;P20336 RAB3D;RAB3A Ras-related protein Rab-3D;Ras-related protein Rab-3A no no 0 0 0 0 0 5 0 1 58.507 58.507 2 0.0057253 17333 TMT1-4 114.89 48.212 83.894 202.42 155.45 114.47 162.15 211.77 80 198 160 116 167 203 1 1 1 1 1 1 12836 13228 365;808 13091 20310 26476 26476 1 LVDVTTAQV Unmodified 944.51786 0.51786169 2089 Q7Z3D6-5;Q7Z3D6-3;Q7Z3D6;Q7Z3D6-2 C14orf159 UPF0317 protein C14orf159, mitochondrial yes no 0 0 0 0 0 5 0 1 63.64 63.64 2 0.0071973 19328 TMT1-4 93.374 85.684 30.766 36.83 27.717 29.091 50.741 36.928 29 37 29 29 51 36 1 1 1 1 1 1 5041.2 13229 2089 13092 20311 26477 26477 1 LVDVVAVILK Unmodified 1067.6954 0.69543213 2536 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 0 9 0 1 86.625 86.625 2 0.00066252 26164 TMT1-8 108.98 54.569 46.647 34.053 66.114 43.495 34.887 22.456 44 36 65 44 36 22 1 1 1 1 1 1 4100.2 13230 2536 13093 20312 26478 26478 1 LVDYDSAR Unmodified 937.45051 0.45051041 2849;76 Q9UBW5;Q9UBW5-3;Q9UBW5-2;P49418-2;P49418;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN2;AMPH;BIN1 Bridging integrator 2;Amphiphysin;Myc box-dependent-interacting protein 1 no no 0 0 0 0 0 3.5 0.5 1 1 42.476 42.476 2 3.6925E-08 12327 TMT1-2 176.66 102.25 1050 1192.6 1058.9 857.82 954.47 1182.7 990 1204 1085 859 989 1135 2 2 2 2 2 2 133590 13231 2849;76 13094 20313;20314 26479;26480 26479 2 LVEAEVHR Unmodified 951.51378 0.51377937 1299 P54619-2;P54619;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 0 3.5 0.5 1 1 33.712 33.712 3 0.00096836 8841 TMT1-2 121.09 62.925 99.638 107.34 114.68 87.215 113.45 112.96 94 109 116 88 116 109 2 2 2 2 2 2 15220 13232 1299 13095 20315;20316 26481;26482 26481 2 LVEALAAATEK Unmodified 1114.6234 0.6233894 2516 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 0 0 0 7 0 1 68.148 68.148 3 0.00011027 20686 TMT1-6 76.655 45.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13233 2516 13096 20317 26483 26483 1 LVEALCAEHQINLIK Unmodified 1749.9447 0.94474031 884 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 0 7 0 2 64.676 64.676 3;4 2.6057E-11 19281 TMT1-6 127.27 97.209 712.36 751.97 643.73 559.64 690.12 872.55 671 762 663 559 713 837 3 3 3 3 3 3 128030 13234 884 13097 20318;20319 26484;26485;26486 26484 3 LVECLETVLNK Unmodified 1316.701 0.70098779 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 7 0 1 77.758 77.758 3 2.5244E-06 24385 TMT1-6 123.79 70.89 77.124 132.68 90.143 96.474 105.7 113.18 73 131 95 95 109 109 2 2 2 2 2 2 15958 13235 369 13098 20320 26487;26488 26487 2 LVEDKPGSR Unmodified 999.53491 0.53490874 1617 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 yes yes 0 0 0 0 1 5 0 1 34.966 34.966 3 0.0047539 8026 TMT1-4 83.862 55.998 281.61 296.72 208.92 246.43 299 314.47 265 300 221 242 307 303 1 1 1 1 1 1 14472 13236 1617 13099 20321 26489 26489 1 LVEDMENK Unmodified 976.45355 0.45354688 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 3 1 1 1 51.389 51.389 2 0.00054443 14640 TMT1-3 150.4 79.48 766.31 1009.6 736.29 557.49 569.12 1170.2 723 1009 763 560 607 1113 4 4 4 4 4 4 114310 13237 1144;1145 13100 20322;20323 26490;26491;26492;26493 26492 4 LVEEELLK Unmodified 971.55391 0.55391285 2557 Q9BW71-3;Q9BW71-2;Q9BW71 HIRIP3 HIRA-interacting protein 3 yes no 0 0 0 0 0 4 0 1 61.275 61.275 2 0.0028057 18716 TMT1-3 80.438 24.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13238 2557 13101 20324 26494 26494 1 LVEENALAPDFSK Unmodified 1431.7246 0.72456001 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 5 0 1 63.838 63.838 3 0.00027569 19435 TMT1-4 85.42 63.188 765.69 1098.5 765.2 687.49 887.85 1127 723 1093 800 686 916 1081 3 3 3 3 3 3 161530 13239 1684 13102 20325 26495;26496;26497 26496 3 LVEGEVYAVDER Unmodified 1377.6776 0.67760981 2554 Q9BVM4 GGACT Gamma-glutamylaminecyclotransferase yes yes 0 0 0 0 0 2 0 1 53.755 53.755 2 0.0020666 16395 TMT1-1 87.184 53.922 39.308 58.79 16.241 86.138 17.755 37.869 37 58 22 80 22 36 1 1 1 1 1 1 5822.7 13240 2554 13103 20326 26498 26498 1 LVEGILHAPDAGWGNLVYVVNYPK Unmodified 2623.3799 0.37985866 1674 Q13148 TARDBP TAR DNA-binding protein 43 yes yes 0 0 0 0 0 8.33 0.471 2 1 82.99 82.99 3;4 3.9115E-38 26555 TMT1-7 123.6 111.05 115.44 129.16 146.23 76.596 113.17 135.35 109 131 146 80 116 130 3 3 3 3 3 3 21533 13241 1674 13104 20327;20328;20329 26499;26500;26501;26502 26501 4 LVEGLQGQTWAPDWVEELR Unmodified 2225.1117 0.1116823 5 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 0 0 0 6 0 1 82.116 82.116 3 1.1684E-06 26770 TMT1-5 69.122 61.583 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13242 5 13105 20330 26503 26503 1 LVEGLSALVVDVK Unmodified 1340.7915 0.79151736 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 7 0 1 81.401 81.401 3 8.0004E-06 25810 TMT1-6 104.87 75.779 23.134 52.117 35.114 13.334 51.466 36.907 22 51 36 15 51 36 1 1 1 1 1 1 12917 13243 800 13106 20331 26504 26504 1 LVEIAQVPK Unmodified 995.60153 0.60153174 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 7 0 1 58.116 58.116 2 0.00034054 16696 TMT1-6 140.5 100.96 277.1 296.42 245.22 234.03 262.32 302.72 261 300 254 232 271 291 2 2 2 2 2 2 54079 13244 1910 13107 20332 26505;26506 26505 2 LVEIVHPSQEEDR Unmodified 1549.7736 0.77363546 1958 Q5H9R7-3;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 0 3 0 1 45.316 45.316 3 8.5886E-05 13394 TMT1-2 94.023 56.43 23.035 44.286 58.433 34.788 57.259 52.732 22 44 58 36 58 51 1 1 1 1 1 1 7702.9 13245 1958 13108 20333 26507 26507 1 LVEKPSPLTLAPHDFANIK Unmodified 2089.1572 0.15717593 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 8 0 1 61.702 61.702 4 9.2865E-07 18201 TMT1-7 85.636 68.951 107.05 200.64 232.16 141.01 193.52 237.53 102 199 232 145 199 228 1 1 1 1 1 1 22456 13246 1286 13109 20334 26508 26508 1 LVELTQK Unmodified 829.49092 0.49091866 1101 P42704;Q9NP80-3;Q9NP80-2;Q9NP80 LRPPRC;PNPLA8 Leucine-rich PPR motif-containing protein, mitochondrial;Calcium-independent phospholipase A2-gamma yes no 0 0 0 0 0 7 0 1 52.437 52.437 2 0.00093948 14484 TMT1-6 112.17 41.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13247 1101 13110 20335 26509 26509 1 LVEPGSPAEK Unmodified 1025.5393 0.53932542 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 0 4 0 1 44.396 44.396 2 0.00028973 12069 TMT1-3 124.81 64.018 193.53 285.21 234.4 210.14 287.98 348.89 183 284 242 210 296 335 1 1 1 1 1 1 27070 13248 104 13111 20336 26510 26510 1 LVEVDSGR Unmodified 873.4556 0.45559579 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 3.5 0.5 1 1 40.837 40.837 2 6.4125E-19 11675 TMT1-2 201.49 98.714 810.84 1203.8 841.85 787.41 1027.6 1187 766 1196 881 784 1056 1141 4 4 4 4 4 4 127060 13249 816 13112 20337;20338 26511;26512;26513;26514 26511 4 LVEVLEGVCSK Unmodified 1231.6482 0.64822394 2412 Q96HD1;Q96HD1-2 CRELD1 Cysteine-rich with EGF-like domain protein 1 yes no 0 0 0 0 0 6 0 1 69.282 69.282 3 0.0018769 21782 TMT1-5 78.692 66.826 23.094 52.004 42.028 52.605 33.662 45.943 22 51 44 51 36 44 1 1 1 1 1 1 5772.8 13250 2412 13113 20339 26515 26515 1 LVEWCEAK Unmodified 1033.4903 0.49026674 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 6 0 1 55.996 55.996 2 0.0061428 16494 TMT1-5 109.21 57.869 115.38 144.12 142.17 123.34 139.77 181.5 109 145 145 123 145 174 1 1 1 1 1 1 12245 13251 1264 13114 20340 26516 26516 1 LVEYDIDEVVYDEDSPYQNIK Unmodified 2545.1748 0.17479565 1274 P52788-2;P52788 SMS Spermine synthase yes no 0 0 0 0 0 3.5 0.5 1 1 78.068 78.068 4 9.6579E-08 25231 TMT1-3 87.676 74.355 69.091 79.754 42.288 59.661 64.477 52.943 65 80 44 58 66 51 2 2 1 2 2 1 10828 13252 1274 13115 20341;20342 26517;26518 26518 2 LVFDEYLK Unmodified 1025.5433 0.54334816 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 6.5 0.5 1 1 68.676 68.676 2 0.0025466 21430 TMT1-5 136.16 117.42 892.62 1542.6 1056.8 1011.2 1175.1 1376.8 845 1523 1108 1003 1213 1323 4 4 4 4 4 4 174220 13253 555 13116 20343;20344 26519;26520;26521;26522 26519 4 LVFFAEDVGSNK Unmodified 1324.6663 0.66631685 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 7 0 1 70.167 70.167 3 0.04348 21575 TMT1-6 43.604 9.7186 54.305 42.584 34.107 45.262 42.376 45.695 51 44 36 44 44 44 1 1 1 1 1 1 7411.7 13254 482 13117 20345 26523 26523 1 LVFGFLNGR Unmodified 1021.5709 0.57090032 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 9 0 1 71.668 71.668 2 5.0577E-10 20312 TMT1-8 180 135.23 115.08 160.54 179.94 152.06 177.98 187.87 109 161 182 152 183 181 1 1 1 1 1 1 26510 13255 394 13118 20346 26524 26524 1 LVFLGEQSVGK Unmodified 1175.655 0.65502388 2733;810 P20340;P20340-2;P20340-3;Q9NRW1 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 0 8 0 2 64.802 64.802 2;3 1.2956E-11 19405 TMT1-7 171.56 103.34 318.1 450.2 618.41 364.5 569.21 481.58 302 453 613 377 576 467 2 2 2 2 2 2 191490 13256 810;2733 13119 20347;20348 26525;26526 26525 2 LVFLGLDNAGK Unmodified 1145.6445 0.64445919 2721 Q9NR31;Q9Y6B6 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 0 0 0 0 0 9 0 1 71.745 71.745 2 4.507E-22 20326 TMT1-8 190.02 112.73 301.44 398.66 395.7 358.9 352.17 473.91 285 400 404 356 368 454 2 2 2 2 2 2 66595 13257 2721 13120 20349 26527;26528 26527 2 LVFPQDLLEK Unmodified 1200.6754 0.67542497 2249 Q8TCT9-5;Q8TCT9;Q8TCT9-4;Q8TCT9-2 HM13 Minor histocompatibility antigen H13 yes no 0 0 0 0 0 7.5 0.5 1 1 75.293 75.293 2 9.301E-05 23506 TMT1-6 140.16 112.42 99.619 122.4 105.18 110.18 142.74 143.03 94 123 109 109 146 138 2 2 2 2 2 2 20390 13258 2249 13121 20350;20351 26529;26530 26529 2 LVFPVPLDALSL Unmodified 1282.7537 0.75367529 2322 Q92851-6;Q92851-2;Q92851-4 CASP10 Caspase-10;Caspase-10 subunit p23/17;Caspase-10 subunit p12 yes no 0 0 0 0 0 8 0 1 105.16 105.16 2 0.038316 33621 TMT1-7 62.2 50.71 2.136 1.984 0 2.1485 1.9933 0 2 2 0 2 2 0 1 1 0 1 1 0 559.69 13259 2322 13122 20352 26531 26531 1 LVFVHSAEGNEFWSALLEK Unmodified 2175.1001 0.10005498 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 8 0 2 80.499 80.499 3;4 1.2509E-17 25516 TMT1-7 122.14 101.14 238.09 358.42 257.57 242 264.26 387.95 225 356 269 240 276 371 4 4 4 4 4 4 158240 13260 536 13123 20353;20354 26532;26533;26534;26535 26532 4 LVGAIVYYDGQHNDAR Unmodified 1789.8747 0.87474649 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 54.267 54.267 3 1.0065E-06 15868 TMT1-5 97.093 78.26 61.253 103.1 77.48 58.04 39.149 122.54 58 102 80 58 44 116 1 1 1 1 1 1 13017 13261 1112 13124 20355 26536 26536 1 LVGEALLESNTIIDHVYCSPSLR Unmodified 2585.3159 0.31593777 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 7 1 2 2 79.048 79.048 3;4 4.3801E-14 25573 TMT1-5 103.92 82.918 85.601 124.24 115.19 78.956 144.18 142.99 81 124 117 81 146 138 4 4 4 4 4 4 22567 13262 2263 13125 20356;20357;20358;20359 26537;26538;26539;26540 26538 4 LVGGKDFEQPLAISR Unmodified 1628.8886 0.88860564 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 1 7.5 0.5 1 1 57.464 57.464 3 4.3017E-19 16489 TMT1-6 162.64 116.24 1718.5 2251.6 1588 1444.4 1041.1 2444.5 1621 2250 1660 1426 1139 2321 4 4 4 4 4 4 276260 13263 41 13126 20360;20361 26541;26542;26543;26544 26542 4 LVGGQAGLGR Unmodified 926.52976 0.52976379 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 7 0 1 42.071 42.071 2 6.2804E-21 10416 TMT1-6 201.49 49.017 99.607 114.81 113.59 101.76 157.28 157.54 94 116 116 102 160 152 1 1 1 1 1 1 23230 13264 3051 13127 20362 26545 26545 1 LVGGTTPGK Unmodified 828.47052 0.47051757 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 8 0 1 41.804 41.804 2 0.00017433 10336 TMT1-7 147.19 72.77 201.67 214.15 188 180.49 268.05 268.45 190 217 194 180 273 259 1 1 1 1 1 1 23002 13265 1285 13128 20363 26546 26546 1 LVGIFENQER Unmodified 1203.6248 0.62478638 380 O95989 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes yes 0 0 0 0 0 6 0 1 59.252 59.252 2 0.002059 17817 TMT1-5 100.57 58.677 122.5 190 169.43 153.14 154.11 181.09 116 189 174 152 160 174 1 1 1 1 1 1 19534 13266 380 13129 20364 26547 26547 1 LVGMPAK Unmodified 714.40983 0.40983157 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 49.804 49.804 2 0.023777 13522 TMT1-7 94.669 58.082 139.25 128.11 112.58 102.09 142.62 127.05 131 131 116 102 145 123 1 1 1 1 1 1 6590.3 13267 1058 13130 20365 26548 26548 1 LVGQGASAVLLDLPNSGGEAQAK Unmodified 2194.1594 0.15936077 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 6.5 0.5 2 2 69.916 69.916 3;4 8.3743E-10 22036 TMT1-5 89.631 74.703 306.82 468.5 333.5 324.54 342.38 469.93 290 465 349 321 357 450 5 5 5 5 5 5 72749 13268 2485 13131 20366;20367;20368;20369 26549;26550;26551;26552;26553 26550 5 LVGQSIIAYLQK Unmodified 1331.7813 0.78128702 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 75.885 75.885 3 0.0331 21960 TMT1-8 42.446 21.983 122.84 143.45 152.21 68.001 144.44 119.53 116 145 152 73 145 116 1 1 1 1 1 1 16577 13269 1287 13132 20370 26554 26554 1 LVGSGLHTVEAAGEAR Unmodified 1565.8162 0.81616898 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 5 0 1 45.516 45.516 3 2.0823E-44 12213 TMT1-4 206.27 196.29 146.4 165.46 140.71 123.7 124.84 189.38 138 167 145 123 131 181 1 1 1 1 1 1 36171 13270 3051 13133 20371 26555 26555 1 LVGTPGAELLK Unmodified 1096.6492 0.64921022 1890 Q16539;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 7 0 1 62 62 2 0.00015887 18235 TMT1-6 110.38 46.902 130.28 150.31 157.63 130.44 177.94 156.95 123 152 160 131 181 152 1 1 1 1 1 1 23036 13271 1890 13134 20372 26556 26556 1 LVGVFHTEYGALNR Unmodified 1574.8205 0.82052608 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 0 7.5 0.5 1 1 55.789 55.789 3 3.628E-17 15864 TMT1-7 149.02 119.71 368.48 436.72 458.12 283.23 400.52 476.8 348 441 461 291 411 458 2 2 2 2 2 2 58721 13272 2855 13135 20373;20374 26557;26558 26558 2 LVGYLDR Unmodified 834.45995 0.45995289 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 5.5 0.5 1 1 51.919 51.919 2 0.0082888 14916 TMT1-5 117.62 77.859 785.76 1375.1 944.97 795.11 989.04 1356.5 744 1357 986 796 1025 1299 3 3 3 3 3 3 123580 13273 538 13136 20375;20376 26559;26560;26561 26561 3 LVHEGPLTWR Unmodified 1206.6509 0.65094155 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 7 0 1 48.498 48.498 3 7.3317E-05 12913 TMT1-6 120.45 89.149 61.462 79.941 61.918 74.204 100.71 74.944 58 80 65 73 102 73 1 1 1 1 1 1 9702.3 13274 2325 13137 20377 26562 26562 1 LVHIIGALR Unmodified 990.63383 0.63383493 2535 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 0 9 0 1 52.698 52.698 3 0.0020983 12836 TMT1-8 87.251 55.299 68.628 93.576 108.44 79.515 77.724 67.072 65 94 109 80 80 65 1 1 1 1 1 1 19237 13275 2535 13138 20378 26563 26563 1 LVHPTDK Unmodified 808.4443 0.44430282 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 6 0 1 33.051 33.051 3 0.036164 7432 TMT1-5 55.717 21.639 84.024 114.27 208.45 87.915 127.8 150.92 80 116 203 94 131 145 1 1 1 1 1 1 5096.2 13276 2079;2399 13139 20379 26564 26564 1 LVHSGPGK Unmodified 793.44464 0.44463717 1740 Q13884 SNTB1 Beta-1-syntrophin yes yes 0 0 0 0 0 7.5 0.5 1 1 30.599 30.599 3 0.0062355 5954 TMT1-6 80.229 54.335 131.2 174.62 163.74 130.65 147.31 165.29 124 175 167 131 152 159 2 2 2 2 2 2 8226 13277 1740 13140 20380;20381 26565;26566 26565 2 LVICPDEGFYK Unmodified 1339.6482 0.64822394 1375 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 0 6.5 0.5 1 1 65.516 65.516 3 4.6905E-05 20198 TMT1-5 106.29 94.375 130.41 151.75 134.7 108.97 113.5 112.96 123 153 138 109 117 109 2 2 2 2 2 2 21495 13278 1375 13141 20382;20383 26567;26568 26567 2 LVIDQIDNGFFSPK Unmodified 1591.8246 0.8246084 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 8 0 1 78.087 78.087 3 0.00024097 24642 TMT1-7 63.037 42.931 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13279 515 13142 20384 26569 26569 1 LVIEEAER Unmodified 957.51311 0.51311067 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 2.5 0.5 1 1 46.913 46.913 2 0.0029292 13832 TMT1-1 134.15 25.453 408.08 568.63 363.41 405.52 532.72 514.6 385 566 386 400 544 497 3 3 3 3 3 3 80298 13280 1233 13143 20385;20386 26570;26571;26572 26571 3 LVIGDHK Unmodified 780.44939 0.4493882 49 O00193 SMAP Small acidic protein yes yes 0 0 0 0 0 6.5 0.5 1 1 40.124 40.124 3 0.0014311 9699 TMT1-6 128.57 78.527 206.98 357.35 256.07 256.29 322.72 341.5 196 353 268 254 331 329 2 2 2 2 2 2 32982 13281 49 13144 20387;20388 26573;26574 26574 2 LVIHNDGTK Unmodified 995.53999 0.53999412 2074 Q7L1W4 LRRC8D Volume-regulated anion channel subunit LRRC8D yes yes 0 0 0 0 0 6 0 1 37.18 37.18 3 0.026439 9073 TMT1-5 53.089 24.392 84.906 85.428 84.657 88.075 104.76 151.58 80 87 87 87 109 145 1 1 1 1 1 1 4840.3 13282 2074 13145 20389 26575 26575 1 LVIIEGDLER Unmodified 1155.6499 0.6499385 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 4.5 0.5 1 1 63.733 63.733 2 1.2841E-38 19676 TMT1-3 220.71 176.29 320.01 705.38 621.91 500.86 571.96 645.66 305 693 636 502 590 621 4 4 4 4 4 4 242510 13283 519;520;521;518 13146 20390;20391 26576;26577;26578;26579 26576 4 LVIIEGDLERTEER Unmodified 1670.8839 0.88391419 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 3 0 1 59.561 59.561 3 4.2119E-07 18978 TMT1-2 106.58 43.397 30.512 51.232 58.294 27.7 27.771 37.584 29 51 58 29 29 36 1 1 1 1 1 1 11001 13284 519;520;521;518 13147 20392 26580 26580 1 LVIIESDLER Unmodified 1185.6605 0.66050319 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 0 4.5 0.5 1 1 64.384 64.384 2 0.0008081 19590 TMT1-4 106.18 61.829 542.7 558.87 468.08 434.06 543.04 571.87 511 567 484 432 557 551 3 3 3 3 3 3 118940 13285 592;593;594;595 13148 20393;20394 26581;26582;26583 26583 3 LVIIESDLERAEER Unmodified 1670.8839 0.88391419 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 1 3.5 0.5 1 1 63.567 63.567 3 6.0379E-10 20746 TMT1-2 117.63 57.959 223.59 273.49 241.34 188.12 216.74 290.16 211 275 247 189 225 278 2 2 2 2 2 2 66344 13286 592;593;594;595 13149 20395;20396 26584;26585 26584 2 LVIITAGAR Unmodified 912.57565 0.57565135 385 P00338;P00338-3;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 5 4 1 1 54.252 54.252 2 4.9095E-31 13316 TMT1-8 219.16 116.39 1689.3 2925 1964.2 1569.4 2153.4 2601.4 1599 2887 2050 1580 2213 2498 3 3 3 3 3 3 383840 13287 385 13150 20397;20398 26586;26587;26588 26587 3 LVILANNCPALR Unmodified 1352.7598 0.75984008 1455 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 0 9 0 1 61.546 61.546 2 6.3849E-09 16330 TMT1-8 142.04 95.38 61.644 49.145 57.548 43.731 49.519 52.953 58 51 58 44 51 51 1 1 1 1 1 1 9232.7 13288 1455 13151 20399 26589 26589 1 LVILDNYDLASEWAAK Unmodified 1819.9356 0.93561541 2254 Q8TDQ7-3;Q8TDQ7-2;Q8TDQ7;Q8TDQ7-5 GNPDA2 Glucosamine-6-phosphate isomerase 2 yes no 0 0 0 0 0 7 0 1 83.068 83.068 3 7.7479E-09 26499 TMT1-6 111.43 88.295 30.739 51.864 19.555 22.058 43.736 37.128 29 51 22 22 44 36 1 1 1 1 1 1 5775.7 13289 2254 13152 20400 26590 26590 1 LVILEGELER Unmodified 1169.6656 0.66558856 1486;1487;551;552 P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 0 4.75 0.829 2 1 1 66.547 66.547 2;3 1.1934E-28 20604 TMT1-4 207.68 131 1081.8 1410.9 1297.8 1124.5 1301.4 1323.1 1022 1415 1329 1122 1337 1276 6 6 6 6 6 6 933750 + 13290 1486;1487;551;552 13153 20401;20402;20403;20404 26591;26592;26593;26594;26595;26596 26595 6 LVILEGELERAEER Unmodified 1654.889 0.88899957 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 1 4 0.707 1 2 1 65.462 65.462 3 3.569E-22 20141 TMT1-3 173.06 134.26 1070.8 1334 1043 828.44 882.08 1502.4 1010 1338 1077 830 929 1433 8 8 8 8 8 8 292320 13291 1486;1487 13154 20405;20406;20407;20408 26597;26598;26599;26600;26601;26602;26603;26604 26600 8 LVINGNPITIFQER Unmodified 1612.8937 0.89369102 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 8.33 0.471 2 1 74.029 74.029 2;3 1.3855E-21 23076 TMT1-7 170.68 111.7 192.24 291.17 265.04 145.91 235.75 250.18 182 290 268 152 240 241 4 4 4 4 4 4 100780 13292 472 13155 20409;20410;20411 26605;26606;26607;26608 26605 4 LVINGNPITIFQERDPSK Unmodified 2040.1004 0.10038933 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 1 8 0 1 67.571 67.571 3 8.8588E-27 20523 TMT1-7 160.81 130.67 231.83 217.79 166.48 242.45 238.09 326.86 218 222 177 235 249 313 1 1 1 1 1 1 46019 13293 472 13156 20412 26609 26609 1 LVINTEEVFRPYAK Unmodified 1677.909 0.90900673 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 1 8 0 1 63.185 63.185 3 0.0060098 18803 TMT1-7 53.403 34.192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13294 1507 13157 20413 26610 26610 1 LVIPSELGYGER Unmodified 1331.7085 0.70851601 905 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 0 5.5 0.5 1 1 62.985 62.985 2 0.00097369 19224 TMT1-5 92.428 27.67 169.76 170.71 178.32 144.23 192.98 157.59 160 174 181 145 196 153 2 2 2 2 2 2 29282 13295 905 13158 20414;20415 26611;26612 26612 2 LVIQSYFVQTLK Unmodified 1437.8232 0.82315184 3024 Q9Y547 HSPB11 Intraflagellar transport protein 25 homolog yes yes 0 0 0 0 0 9 0 1 75.282 75.282 3 1.5045E-05 21731 TMT1-8 98.105 61.821 53.833 72.57 88.082 32.03 109.98 74.68 51 73 87 36 109 73 1 1 1 1 1 1 7511.2 13296 3024 13159 20416 26613 26613 1 LVIVGDGACGK Unmodified 1087.5696 0.56957969 1393;556 P61586;P08134 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC no no 0 0 0 0 0 6.5 0.5 1 1 53.847 53.847 2 1.9035E-06 15116 TMT1-6 135.79 110.87 575.46 911.91 793.6 614.5 901.58 824.94 545 906 812 621 916 798 3 3 3 3 3 3 136680 13297 1393;556 13160 20417;20418 26614;26615;26616 26616 3 LVKPGNQNTQVTEAWNK Unmodified 1925.9959 0.99592426 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 1 8 0 1 50.492 50.492 4 2.4036E-07 13783 TMT1-7 95.428 65.696 233.3 316.14 196.66 233.75 256.57 348.72 220 315 210 229 267 334 1 1 1 1 1 1 24244 13298 2943 13161 20419 26617 26617 1 LVKPTTEK Unmodified 914.54368 0.54368251 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 1 8 0 1 39.155 39.155 3 0.015188 9318 TMT1-7 76.345 26.901 169.67 475.17 296.41 216.59 445.98 308.14 162 462 310 222 446 301 1 1 1 1 1 1 18701 13299 2 13162 20420 26618 26618 1 LVLAGGPLGLMQAVLDHTIPYLHVR Unmodified 2682.5043 0.50434766 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 97.103 97.103 4 4.8199E-05 29888 TMT1-8 52.769 37.515 46.787 31.207 44.898 13.503 48.28 38.064 44 33 44 14 48 37 3 3 3 2 3 3 3992.9 13300 898 13163 20421 26619;26620;26621 26619 3 LVLDAFALPLTNLFK Unmodified 1673.9756 0.97562974 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 0 9 0 1 102.08 102.08 3 9.9688E-06 31811 TMT1-8 86.944 48.31 39.272 43.579 35.233 44.633 72.255 59.766 37 44 37 44 73 58 2 2 2 2 2 2 5000.5 13301 1310 13164 20422 26622;26623 26622 2 LVLDSIIWAFK Unmodified 1303.754 0.75400964 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 1 97.76 97.76 2 0.00041344 30179 TMT1-8 90.657 59.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13302 121 13165 20423 26624 26624 1 LVLDSVK Unmodified 772.46945 0.46945494 265 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 0 0 7 0 1 54.768 54.768 2 0.0062347 15366 TMT1-6 132.29 21.007 313.4 436.06 337.91 317.1 433.38 388.45 296 435 351 316 441 376 1 1 1 1 1 1 105440 13303 265 13166 20424 26625 26625 1 LVLDSVKLEA Unmodified 1085.6332 0.6332258 265 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 0 1 6 0 1 66.737 66.737 2 0.0015664 20750 TMT1-5 78.934 36.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13304 265 13167 20425 26626 26626 1 LVLEQVVTSIASVADTAEEK Unmodified 2101.1154 0.11543027 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 6.33 0.471 2 1 96.678 96.678 3;4 3.4033E-10 32073 TMT1-5 99.86 85.441 140.63 121.34 66.908 67.511 92.076 122.09 132 124 72 67 95 117 4 4 4 4 4 4 11586 13305 65 13168 20426;20427;20428 26627;26628;26629;26630 26628 4 LVLEVAQHLGESTVR Unmodified 1649.9101 0.91006937 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 65.531 65.531 3 3.6301E-28 19700 TMT1-6 188.39 156.41 376.76 516.25 441.01 438.04 417.43 508.3 356 516 456 432 435 488 4 4 4 4 4 4 201250 13306 508 13169 20429;20430 26631;26632;26633;26634 26632 4 LVLLFSGK Unmodified 875.54804 0.54803961 1832 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 0 9 0 1 73.326 73.326 2 0.0063207 20942 TMT1-8 124.08 72.391 91.47 231.22 120.16 162.64 211.99 218.88 87 225 131 159 217 211 2 2 2 2 2 2 21325 13307 1832 13170 20431 26635;26636 26635 2 LVLLGESAVGK Unmodified 1084.6492 0.64921022 1236;1371 P51148;P51148-2;P20339-2;P20339;P61020;P61020-2 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 0 0 0 0 0 8 0 1 65.533 65.533 2 2.6198E-12 19665 TMT1-7 178.22 114.74 292.52 255.65 393.75 232.06 360.98 356.4 276 265 389 240 367 344 2 2 2 2 2 2 34853 13308 1236;1371 13171 20432 26637;26638 26637 2 LVLLGGEEEGPR Unmodified 1267.6772 0.67721588 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 5 0 1 58.755 58.755 2 1.6094E-05 17441 TMT1-4 114.89 80.362 69.021 79.558 54.308 74.668 100.18 89.883 65 80 58 73 102 87 1 1 1 1 1 1 9318.9 13309 2131 13172 20433 26639 26639 1 LVLPIAYEFNPELVLVSAGFDAAR Unmodified 2603.3999 0.3999254 2840 Q9UBN7;Q9UBN7-2 HDAC6 Histone deacetylase 6 yes no 0 0 0 0 0 9 0 1 103.5 103.5 3 1.3519E-10 32255 TMT1-8 75.868 66.08 11.757 3.9679 11.548 11.393 14.522 18.774 11 4 11 11 15 18 2 1 2 2 3 3 3356 13310 2840 13173 20434 26640;26641;26642 26640 3 LVLPSGMEELQAQLEK Unmodified 1783.939 0.93898623 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6.5 0.5 1 1 78.137 78.137 3 2.84E-13 24578 TMT1-6 129.38 101.17 114.91 182.75 188.63 97.169 163.46 196.81 109 182 189 102 167 189 2 2 2 2 2 2 28696 13311 772 13174 20435;20436 26643;26644 26644 2 LVLPSLLAALEEESWR Unmodified 1824.9986 0.99855002 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 8 0 1 97.325 97.325 3 0.0015576 31807 TMT1-7 63.682 52.738 7.3942 15.351 6.6157 0 15.156 15.558 7 15 7 0 15 15 1 1 1 0 1 1 3445.8 13312 2308 13175 20437 26645 26645 1 LVLQSLFSLIR Unmodified 1287.7915 0.79145778 2039 Q6PJW8;Q6PJW8-2;Q6PJW8-3 CNST Consortin yes no 0 0 0 0 0 9 0 1 93.161 93.161 2 1.8706E-12 28534 TMT1-8 163.84 103.16 115.71 122.36 106.15 86.833 102.69 213.47 109 124 109 87 109 203 2 2 2 2 2 2 21191 13313 2039 13176 20438 26646;26647 26646 2 LVLQYAPSA Unmodified 960.52803 0.52803245 95 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 0 7 0 1 67.55 67.55 2 0.0055144 20455 TMT1-6 97.071 65.767 108.23 114.33 107.74 62.745 99.917 113.34 102 116 109 65 102 109 1 1 1 1 1 1 44559 13314 95 13177 20439 26648 26648 1 LVLSMNVAK Oxidation (M);Phospho (STY) 1069.5243 0.52428278 820 P20929-4;P20929;P20929-3;P20929-2 NEB Nebulin yes no 0 0 1 1 0 9 0 1 72.311 72.311 2 0.026013 20587 TMT1-8 44.135 9.9291 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13315 820 13178 20440 26649 26649 152 3 1 LVLSSEK Unmodified 774.44872 0.4487195 409 P01024;O95568 C3;METTL18 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2;Histidine protein methyltransferase 1 homolog yes no 0 0 0 0 0 7 0 1 47.847 47.847 2 0.01669 12666 TMT1-6 100.19 45.663 114.84 231.11 160.08 138.41 153.39 221.61 109 227 167 138 160 212 1 1 1 1 1 1 12463 13316 409 13179 20441 26650 26650 1 LVLTQEQLHQLHSR Unmodified 1700.9322 0.93220179 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 43.31 43.31 4 4.3923E-05 10868 TMT1-6 89.26 74.658 281.61 403.76 297.66 271.87 350.59 514.47 266 402 310 271 364 492 1 1 1 1 1 1 5885.4 13317 1762 13180 20442 26651 26651 1 LVLVGDGGTGK Unmodified 1014.571 0.5709599 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 4 3 1 1 55.023 55.023 2 7.9278E-12 15560 TMT1-6 174.8 50.943 446.53 1016.3 734.65 621.59 827.58 929.39 425 995 763 623 849 894 2 2 2 2 2 2 181720 13318 1445 13181 20443;20444 26652;26653;26654 26654 3 LVLVNAIYFK Unmodified 1178.7063 0.70633117 967;1222;1221 P30740;P30740-2;O75830;P50453;P50452;P50452-2 SERPINB1;SERPINI2;SERPINB9;SERPINB8 Leukocyte elastase inhibitor;Serpin I2;Serpin B9;Serpin B8 no no 0 0 0 0 0 9 0 1 77.008 77.008 3 0.00029666 22469 TMT1-8 102.07 79.238 222.82 366.32 292.08 332.9 377.61 498.77 211 363 305 327 392 478 3 3 3 3 3 3 68182 13319 967;1222;1221 13182 20445 26655;26656;26657 26656 3 LVLVNALYFNGQWK Unmodified 1663.9086 0.9086128 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 0 9 0 1 82.752 82.752 3 0.0047584 24650 TMT1-8 55.314 34.651 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13320 487 13183 20446 26658 26658 1 LVLVNAVYFR Unmodified 1192.6968 0.69682911 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 9 0 1 71.04 71.04 2 2.4389E-12 20136 TMT1-8 178.99 140.18 153.31 218.32 197.25 191.46 178.73 265.66 145 218 203 189 188 254 2 2 2 2 2 2 35753 13321 1014 13184 20447 26659;26660 26660 2 LVLVSPTSEQYDSLLR Unmodified 1818.9727 0.9727292 47 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 0 7 0 1 72.201 72.201 3 1.2781E-43 22277 TMT1-6 178.23 151.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13322 47 13185 20448 26661 26661 1 LVLYVVK Unmodified 832.54223 0.54222595 1598 Q05823-2;Q05823 RNASEL 2-5A-dependent ribonuclease yes no 0 0 0 0 0 9 0 1 65.612 65.612 2 0.015363 17938 TMT1-8 97.64 77.794 130.79 120.41 98.588 87.387 97.208 159.26 123 123 102 87 102 152 1 1 1 1 1 1 5488.7 13323 1598 13186 20449 26662 26662 1 LVMEEAPESYK Unmodified 1294.6115 0.61150408 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 4 0 1 55.297 55.297 3 0.0044724 16365 TMT1-3 69.979 38.632 77.295 85.663 101.25 80.393 53.843 91.206 73 87 102 80 58 87 1 1 1 1 1 1 9104.7 13324 3001 13187 20450 26663 26663 1 LVNACLAEELPHIHAFEQK Unmodified 2218.1205 0.12047285 2637 Q9H3K6 BOLA2 BolA-like protein 2 yes yes 0 0 0 0 0 6 0 1 63.405 63.405 4 0.00022499 19470 TMT1-5 62.556 46.417 231.11 281.65 231.83 195.33 269.88 286.51 218 283 239 196 276 276 2 2 2 2 2 2 18836 13325 2637 13188 20451 26664;26665 26665 2 LVNELTEFAK Unmodified 1162.6234 0.6233894 29 CON__P02769 yes yes 0 0 0 0 0 6 0 1 69.025 69.025 3 1.7061E-05 21649 TMT1-5 97.456 69.775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13326 29 13189 20452 26666 26666 1 LVNEVTEFAK Unmodified 1148.6077 0.60773933 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 4.6 1.85 1 2 2 63.024 63.024 2;3 2.9591E-05 15828 TMT 1-phospho 150.1 105.75 2075.9 2198.4 3073 1708.6 2918.7 3492.1 1962 2246 3042 1781 2980 3354 7 7 7 7 7 7 809960 + 13327 28 13190 20453;20454;20455;20456;20457 26667;26668;26669;26670;26671;26672;26673 26668 7 LVNHFVEEFK Unmodified 1260.6503 0.65027285 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 6.5 0.5 1 1 59.45 59.45 3 0.00015597 17752 TMT1-5 106.29 90.751 507.48 626.76 558.58 549.63 620.47 660.27 479 630 576 544 639 636 4 4 4 4 4 4 73644 13328 618 13191 20458;20459 26674;26675;26676;26677 26674 4 LVNHFVEEFKR Unmodified 1416.7514 0.75138388 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 8 0 2 54.048 54.048 3;4 0.00059709 15280 TMT1-7 90.05 58.822 545.27 694.08 643.51 539.94 517.72 893.46 515 697 658 538 548 852 2 2 2 2 2 2 106010 13329 618 13192 20460;20461 26678;26679 26679 2 LVNLQELALNQNQLDFLPASLFTNLENLK Unmodified 3311.7765 0.77654258 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 1 105.68 105.68 4 3.2048E-40 33028 TMT1-8 128.4 103.75 95.698 203.77 154.12 214.09 158.14 225.74 91 200 163 207 168 216 3 3 3 3 3 3 61833 13330 1067 13193 20462 26680;26681;26682 26681 3 LVNLQHLDLLNNK Unmodified 1532.8675 0.86747627 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 9 0 1 64.888 64.888 3 6.5201E-17 17671 TMT1-8 156.8 108.79 115.23 136.13 175.15 98.091 157.15 166.08 109 138 174 102 160 160 1 1 1 1 1 1 17663 13331 2362 13194 20463 26683 26683 1 LVNLYGLLHGLQAAVAQQDTLMEAR Unmodified 2723.4429 0.44286962 2337 Q92974-3;Q92974-2;Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 0 9 0 1 92.528 92.528 4 6.1926E-05 28345 TMT1-8 50.783 42.595 47.019 12.425 21.832 22.218 28.023 37.576 44 15 22 22 29 36 1 1 1 1 1 1 3915.6 13332 2337 13195 20464 26684 26684 1 LVNMLDAVQENQHK Unmodified 1637.8195 0.8195398 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 5.2 2.14 1 3 1 60.248 60.248 3;4 1.433E-34 17372 TMT1-6 196.67 178.58 1179.2 1921.2 1630.6 1236.6 1492.6 1942.3 1117 1906 1670 1246 1545 1862 6 6 6 6 6 6 525890 13333 372 13196 20465;20466;20467;20468;20469 26685;26686;26687;26688;26689;26690 26689 6 LVNMLDAVQENQHK Oxidation (M) 1653.8145 0.81445442 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 1 0 0 5.75 0.829 2 1 1 47.6 47.6 3 4.8278E-07 12462 TMT1-6 109.1 89.526 283.35 369.03 394.99 295.41 359.71 400.15 268 371 399 298 370 385 4 4 4 4 4 4 72013 13334 372 13196 20470;20471;20472;20473 26691;26692;26693;26694 26694 33 4 LVNQQLLADPLVPPQLTIK Unmodified 2099.2354 0.23542625 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 8 0 1 81.8 81.8 4 2.8491E-05 26135 TMT1-7 71.558 61.182 107.58 85.364 60.674 89.614 98.938 105.91 101 88 65 87 102 102 2 2 2 2 2 2 11514 13335 929 13197 20474 26695;26696 26696 2 LVNSGIYK Unmodified 892.50182 0.5018177 1941 Q4KMQ2-3;Q4KMQ2;Q4KMQ2-4;Q4KMQ2-2 ANO6 Anoctamin-6 yes no 0 0 0 0 0 8 0 1 49.493 49.493 2 0.006311 13374 TMT1-7 106.93 88.195 222.72 255.79 221.37 174.59 185.61 179.12 210 258 227 175 191 173 1 1 1 1 1 1 29610 13336 1941 13198 20475 26697 26697 1 LVNVVLGAHNVR Unmodified 1289.7568 0.75680361 872 P24158 PRTN3 Myeloblastin yes yes 0 0 0 0 0 9 0 1 50.875 50.875 2 3.6967E-11 12131 TMT1-8 154.05 110.93 38.047 65.895 41.856 36.063 42.029 68.091 36 65 44 36 44 65 1 1 1 1 1 1 7834 13337 872 13199 20476 26698 26698 1 LVNWSCTLNSAISDIEVDKK Unmodified 2291.1467 0.14674718 903 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 1 8 0 1 77.707 77.707 4 0.0029583 24546 TMT1-7 49.865 35.095 69.179 63.808 41.117 51.945 71.662 67.245 65 65 44 51 73 65 1 1 1 1 1 1 4700.7 13338 903 13200 20477 26699 26699 1 LVPDSDVR Unmodified 899.47125 0.47124585 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 3 0.816 1 1 1 42.246 42.246 2 0.0018741 11145 TMT1-3 139.68 70.504 476.8 632.26 480.75 471.19 504.93 596.41 450 632 501 466 523 573 5 5 5 5 5 5 75299 13339 787 13201 20478;20479;20480 26700;26701;26702;26703;26704 26704 5 LVPEAVGDQK Unmodified 1054.5659 0.56587452 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 50.024 50.024 2 0.025908 13992 TMT1-4 72.848 29.078 85.024 70.648 77.201 105.33 82.803 97.841 80 73 80 102 87 94 1 1 1 1 1 1 12410 13340 1185 13202 20481 26705 26705 1 LVPFATAVAELDLK Unmodified 1485.8443 0.84428121 1840 Q15283-2;Q15283 RASA2 Ras GTPase-activating protein 2 yes no 0 0 0 0 0 8 0 1 85.446 85.446 3 0.0040039 27391 TMT1-7 62.042 37.188 23.324 21.345 29.358 13.949 37.015 0 22 22 29 15 36 0 1 1 1 1 1 0 1692.7 13341 1840 13203 20482 26706 26706 1 LVPFDHAESTYGLYR Unmodified 1766.8628 0.86278482 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 7 1 1 1 58.444 58.444 3 8.6022E-12 17472 TMT1-5 128.96 112.02 199.5 315.85 286.89 228.54 422.24 404.76 189 314 293 232 427 391 2 2 2 2 2 2 45349 13342 349 13204 20483;20484 26707;26708 26707 2 LVPGGGATEIELAK Unmodified 1353.7504 0.75038083 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5.5 0.5 1 1 61.561 61.561 2;3 8.4589E-08 18641 TMT1-5 113.24 99.836 346.05 531.38 359.98 296.83 395.21 460.96 327 527 376 298 406 443 3 3 3 3 3 3 92266 13343 1232 13205 20485;20486 26709;26710;26711 26710 3 LVPGPVFGSK Unmodified 999.57532 0.57531699 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 9 0 1 61.48 61.48 2 0.012671 16356 TMT1-8 76.17 29.103 160.34 341.66 173.67 213.67 293.14 254.94 152 334 189 210 298 247 2 2 2 2 2 2 42702 13344 1656 13206 20487 26712;26713 26713 2 LVPGWTKPITIGR Unmodified 1436.8504 0.85036964 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 9 0 1 61.517 61.517 3 1.897E-09 16270 TMT1-8 115.79 77.346 649.5 750.16 750.87 617.3 655.52 950.29 613 758 764 617 685 909 2 2 2 2 2 2 127210 13345 1164 13207 20488 26714;26715 26714 2 LVPHNESAWNYLK Unmodified 1569.794 0.79397698 1177 P49354-2;P49354 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 0 0 0 0 0 8 0 1 56.204 56.204 3 2.3733E-08 16049 TMT1-7 120.59 109.33 77.018 116.19 121.89 86.13 90.209 121.08 73 116 123 87 94 116 1 1 1 1 1 1 13419 13346 1177 13208 20489 26716 26716 1 LVPLKETIK Unmodified 1039.6641 0.664132 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 1 9 0 1 53.378 53.378 3 0.0028343 13082 TMT1-8 87.258 47.257 1386.2 2179.9 1422.6 1235.5 1569.4 2203.4 1310 2159 1493 1235 1627 2109 2 2 2 2 2 2 148530 13347 508 13209 20490 26717;26718 26717 2 LVPLLDTGDIIIDGGNSEYR Unmodified 2159.111 0.1110136 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 5 0 1 83.399 83.399 3 1.3346E-23 27110 TMT1-4 134.13 128.7 93.216 130.49 92.485 113.3 75.531 168.4 88 130 95 110 80 160 3 3 2 3 2 3 107120 13348 1260 13210 20491 26719;26720;26721 26720 3 LVPLLDTGDIIIDGGNSEYRDTTR Unmodified 2632.3344 0.33442461 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 5 0 2 75.347 75.347 3;4 1.3161E-06 23934 TMT1-4 72.145 69.568 23.302 36.395 20.181 68.381 77.686 83.063 22 36 22 65 80 80 1 1 1 2 2 2 22009 13349 1260 13211 20492;20493 26722;26723 26723 2 LVPLLLEDGGEAPAALEAALEEK Unmodified 2347.2523 0.25225811 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 2 95.118 95.118 3;4 5.8359E-05 31507 TMT1-4 52.541 32.102 0 0 15.944 6.4157 15.154 7.0296 0 0 15 7 15 7 0 0 1 1 1 1 1438.6 13350 1763 13212 20494;20495 26724;26725 26725 2 LVPNMTPEVVGEQVTSYLTK Unmodified 2204.1399 0.13987088 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 7.5 0.5 1 1 83.064 83.064 3 1.9014E-13 26602 TMT1-7 108.45 84.884 140.03 167.17 128.29 149.46 131.19 213.72 132 168 132 146 139 204 5 5 4 5 5 5 15134 13351 2434 13213 20496;20497 26726;26727;26728;26729;26730 26730 5 LVPNPDQK Unmodified 909.49198 0.4919813 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.67 0.471 1 2 44.996 44.996 2;3 1.4965E-12 12181 TMT1-5 187.8 119.9 3957.9 5461.6 4269.6 3636.3 5013.6 5517.4 3738 5451 4417 3646 5134 5310 3 3 3 3 3 3 1367900 + 13352 32;554 13214 20498;20499;20500 26731;26732;26733 26733 3 LVPNPDQKDSDGDGR Unmodified 1611.7489 0.74887728 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 4 0 1 41.276 41.276 3 1.4112E-07 10792 TMT1-3 110.22 84.627 293.02 374.7 207.9 260.14 270.79 386.69 276 374 225 254 283 370 2 2 2 2 2 2 27049 + 13353 32;554 13215 20501 26734;26735 26734 2 LVPQQLAH Unmodified 904.51305 0.51305109 633 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 0 6 0 1 47.009 47.009 2 0.00020372 12951 TMT1-5 153.67 124.33 280.7 324.43 337.08 368.52 259.17 366.77 265 328 346 360 276 351 1 1 1 1 1 1 125490 13354 633 13216 20502 26736 26736 1 LVPVGYGIK Unmodified 944.5695 0.56950333 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 9 0 1 60.16 60.16 2 0.006582 15833 TMT1-8 97.602 41.092 405.27 737.84 691.03 474.52 649.29 682.9 385 730 701 483 664 658 1 1 1 1 1 1 191980 13355 874 13217 20503 26737 26737 1 LVPVGYGIR Unmodified 972.57565 0.57565135 941 P29692;P29692-2;P29692-3;P29692-4 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 8 0 1 55.937 55.937 2 0.0021498 15912 TMT1-7 105.22 40.441 356.05 477.7 348.17 293.08 399.1 535.47 336 477 362 294 412 513 1 1 1 1 1 1 63299 13356 941 13218 20504 26738 26738 1 LVPVLSAK Unmodified 825.53239 0.53238955 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 9 0 1 59.371 59.371 2 0.0018153 15414 TMT1-8 137.18 77.974 867.88 1418.8 990.78 937.21 1017.3 1348.2 821 1404 1037 929 1058 1292 2 2 2 2 2 2 243110 13357 1053 13219 20505 26739;26740 26739 2 LVPVSFEDPEFK Unmodified 1405.7129 0.71293269 344 O95260-2 ATE1 Arginyl-tRNA--protein transferase 1 yes yes 0 0 0 0 0 6 0 1 72.175 72.175 3 0.040085 22873 TMT1-5 44.82 17.156 53.851 80.175 78.593 64.774 84.375 106.32 51 80 80 65 87 102 1 1 1 1 1 1 6228.9 13358 344 13220 20506 26741 26741 1 LVQAAQMLQSDPYSVPAR Unmodified 1973.004 0.0040461055 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 6.5 2.35 1 1 3 2 1 67.064 67.064 2;3;4 3.4017E-36 20306 TMT1-6 187.46 158.88 637.3 940.92 655.1 641.2 676.34 799.39 602 935 687 634 701 768 11 11 11 11 11 11 369090 13359 776 13221 20507;20508;20509;20510;20511;20512;20513;20514 26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752 26745 11 LVQAAQMLQSDPYSVPAR Oxidation (M) 1988.999 0.99896073 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 1 0 0 7 0.816 1 1 1 60.028 60.028 3 4.0462E-19 18023 TMT1-5 137.73 128.93 414.3 500.69 456.41 376.2 518.39 544.86 391 504 467 378 530 525 5 5 5 5 5 5 84305 13360 776 13221 20515;20516;20517 26753;26754;26755;26756;26757 26753 141 5 LVQAFQFTDK Unmodified 1195.6237 0.62372375 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 8 0 2 65.859 65.859 2;3 1.1255E-28 19903 TMT1-7 208.25 188.01 411.89 643.81 560.77 367.04 500.74 583.74 390 640 571 375 514 561 3 3 3 3 3 3 385070 13361 1606 13222 20518;20519 26758;26759;26760 26760 3 LVQAFQYTDK Unmodified 1211.6186 0.61863837 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 0 7.67 0.471 1 2 59.508 59.508 2;3 2.4143E-09 17223 TMT1-6 171.33 116.78 384.49 354.28 360.74 368.27 371.49 385.95 362 363 370 363 384 372 3 3 3 3 3 3 52400 13362 1679 13223 20520;20521;20522 26761;26762;26763 26761 3 LVQCVDAFEEK Unmodified 1336.6333 0.63330216 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5 0 1 61.844 61.844 3 4.3652E-06 18598 TMT1-4 118.48 87.611 122.78 159.49 147.73 146.9 147.59 135.43 116 160 152 145 152 131 1 1 1 1 1 1 33864 13363 1870 13224 20523 26764 26764 1 LVQDVANNTNEEAGDGTTTATVLAR Unmodified 2559.2413 0.2412525 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 0 2.67 0.471 1 2 58.546 58.546 3;4 3.4353E-38 18554 TMT1-2 142.41 122.62 154.65 236.26 137.08 133.17 155.83 157.59 146 234 146 132 160 152 6 6 6 6 6 6 130460 13364 638 13225 20524;20525;20526 26765;26766;26767;26768;26769;26770 26769 6 LVQDYGLESEVAQHLAATYGDK Unmodified 2406.1703 0.17031939 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 72.772 72.772 4 0.00011515 23037 TMT1-5 59.429 42.712 192.47 307.99 212.69 253.99 233.89 372.82 182 305 225 248 247 356 4 4 4 4 4 4 31032 13365 1112 13226 20527;20528 26771;26772;26773;26774 26773 4 LVQFEQEIER Unmodified 1289.6616 0.66156582 2469 Q99501-3;Q99501-2;Q99501-4;Q99501 GAS2L1 GAS2-like protein 1 yes no 0 0 0 0 0 4 0 2 60.722 60.722 2;3 0.00076227 18512 TMT1-3 107.55 64.69 84.418 139.11 121.18 70.424 113.91 152.39 80 138 123 73 117 146 2 2 2 2 2 2 17699 13366 2469 13227 20529;20530 26775;26776 26775 2 LVQGFMPHFFR Unmodified 1377.7016 0.70159692 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 0 9 0 1 66.711 66.711 3 0.00058976 18339 TMT1-8 82.008 54.327 37.962 74.295 48.897 36.722 42.768 45.684 36 73 51 37 44 44 1 1 1 1 1 1 8880.3 13367 487 13228 20531 26777 26777 1 LVQGSILK Unmodified 856.5382 0.53820321 663 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 0 9 0 1 53.845 53.845 2 0.0066935 13323 TMT1-8 97.635 34.07 61.305 94.613 75.93 104.26 143.84 88.638 58 94 80 102 145 87 1 1 1 1 1 1 6104.3 13368 663 13229 20532 26778 26778 1 LVQIEYALAAVAGGAPSVGIK Unmodified 2026.1463 0.14627689 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 0 9 0 2 91.747 91.747 3;4 9.5978E-16 27968 TMT1-8 105.46 86.387 115.51 153.11 113 85.803 135.74 135.77 109 153 117 87 138 131 3 3 3 3 3 3 90064 13369 891 13230 20533;20534 26779;26780;26781 26779 3 LVQIHVDTMK Oxidation (M) 1198.638 0.63799361 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 1 0 0 7 0 1 47.72 47.72 3 0.040774 12637 TMT1-6 59.542 35.706 99.296 161.43 126.36 116.63 139.82 188.96 94 160 131 116 145 181 1 1 1 1 1 1 15088 13370 3006 13231 20535 26782 26782 322 1 LVQLYAVVSEEPIYIVTEYMSK Unmodified 2573.3339 0.33387925 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 8 0 1 104.73 104.73 4 0.031208 33547 TMT1-7 32.227 19.039 4.2344 11.418 0 4.3045 3.5871 11.624 4 11 0 4 4 11 1 1 0 1 1 1 879.12 13371 673 13232 20536 26783 26783 1 LVQLYGVCTK Unmodified 1179.6322 0.63217995 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 9 0 1 60.554 60.554 2 0.00039497 15943 TMT1-8 117.7 66.995 77.309 93.257 92.478 72.85 75.905 128.95 73 94 94 73 80 123 1 1 1 1 1 1 12795 13372 1601 13233 20537 26784 26784 1 LVQSPNSYFMDVK Unmodified 1526.7439 0.74391524 1100;2069 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 0 0 0 0 0 7 0 1 65.895 65.895 3 0.00024894 19779 TMT1-6 86.405 54.337 61.07 93.958 116.05 78.958 83.21 121.28 58 94 116 80 87 116 1 1 1 1 1 1 12952 13373 1100;2069 13234 20538 26785 26785 1 LVQTAELTK Unmodified 1001.5757 0.57571092 215;1365 O60234;P60983 GMFG;GMFB Glia maturation factor gamma;Glia maturation factor beta no no 0 0 0 0 0 6.5 0.5 1 1 51.805 51.805 2 5.1147E-05 14881 TMT1-5 152.97 86.291 866.21 1316.8 1178.7 961.9 1085 1262.1 820 1311 1206 963 1121 1213 3 3 3 3 3 3 206920 13374 215;1365 13235 20539;20540 26786;26787;26788 26787 3 LVQWGPGLVALQEAEIPEHFGAVR Unmodified 2615.386 0.38600667 1926 Q32P44-2;Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 yes no 0 0 0 0 0 7.5 0.5 1 1 79.132 79.132 3 9.4964E-05 24976 TMT1-6 45.205 41.918 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13375 1926 13236 20541;20542 26789;26790 26789 2 LVRPEVDVMCTAFHDNEETFLK Unmodified 2649.2567 0.25670833 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 5 0 1 66.627 66.627 4 1.605E-09 20536 TMT1-4 89.483 83.119 176.69 247.37 210.69 212.2 253.68 309.36 167 247 218 210 262 297 2 2 2 2 2 2 28134 + 13376 28 13237 20543 26791;26792 26791 2 LVRPPVQVYGIEGR Unmodified 1581.8991 0.89911075 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 1 8 0 1 52.662 52.662 3 2.5496E-14 14562 TMT1-7 131.36 108.88 311.4 509.12 431.04 363.04 426.77 488.84 295 505 443 363 440 470 2 2 2 2 2 2 33796 13377 1148 13238 20544 26793;26794 26793 2 LVSDEMVVELIEK Unmodified 1502.7902 0.79019673 1303 P54819-2;P54819;P54819-3;P54819-5;P54819-6;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 4.5 0.5 1 1 83.066 83.066 3 8.5534E-09 26946 TMT1-4 126.34 81.579 177.37 309.87 224.56 181.04 239.63 303.37 168 306 233 182 247 291 4 4 4 4 4 4 43630 13378 1303 13239 20545;20546 26795;26796;26797;26798 26798 4 LVSDGNINSDR Unmodified 1188.5735 0.57347909 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3.5 0.5 1 1 39.67 39.67 2 2.2115E-06 10146 TMT1-3 133.42 114.81 122.93 175.02 109.54 108.97 193.28 195.96 116 174 116 109 196 189 2 2 2 2 2 2 22010 13379 1546 13240 20547;20548 26799;26800 26800 2 LVSDWNTLK Unmodified 1074.571 0.5709599 3003 Q9Y3L3-2;Q9Y3L3;Q6ZT62-2;Q6ZT62 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 8 0 1 62.455 62.455 2 0.00067332 18492 TMT1-7 131.22 74.504 77.128 132.69 89.429 88.204 82.785 121.29 73 131 94 87 87 116 1 1 1 1 1 1 11595 13380 3003 13241 20549 26801 26801 1 LVSEFPYIEAEVK Unmodified 1522.7919 0.79191129 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 73.619 73.619 3 2.4046E-09 23396 TMT1-5 128.68 94.99 130.64 203.29 232.92 117.73 208.58 195.52 124 203 232 124 211 189 3 3 3 3 3 3 42322 13381 1112 13242 20550;20551 26802;26803;26804 26804 3 LVSELDDANLQVENVR Unmodified 1812.9218 0.92175626 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 3 0 1 64.373 64.373 3 9.151E-07 20932 TMT1-2 97.767 82.891 30.636 35.387 50.926 44.406 34.588 29.927 29 36 51 44 36 29 1 1 1 1 1 1 5733.8 13382 1138 13243 20552 26805 26805 1 LVSETEWNLLQK Unmodified 1458.7718 0.77184455 1839 Q15276-2;Q15276 RABEP1 Rab GTPase-binding effector protein 1 yes no 0 0 0 0 0 7 0 1 71.211 71.211 3 1.6612E-05 21865 TMT1-6 105.46 77.256 53.758 79.916 94.463 48.915 63.682 60.011 51 80 94 51 65 58 1 1 1 1 1 1 6713.9 13383 1839 13244 20553 26806 26806 1 LVSEYMSK Unmodified 955.46847 0.46846866 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 7 0 1 53.727 53.727 2 0.0059419 14982 TMT1-6 111.95 64.865 99.61 114.82 113.2 110.58 96.399 151.82 94 116 116 109 102 145 1 1 1 1 1 1 11336 13384 660 13245 20554 26807 26807 1 LVSFLEAK Unmodified 905.52222 0.52221879 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 8 0 1 68.365 68.365 2 0.014846 20827 TMT1-7 93.429 65.904 46.291 80.552 86.563 56.227 106.74 136.6 44 80 87 58 109 131 1 1 1 1 1 1 7182.2 13385 1105 13246 20555 26808 26808 1 LVSFYLETYGAELTANVLR Unmodified 2158.131 0.13102076 2914 Q9ULZ3;Q9ULZ3-2 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 9 0 1 95.849 95.849 3 9.7602E-06 29534 TMT1-8 68.27 47.317 11.685 10.737 10.701 11.186 10.6 11.424 11 11 11 11 11 11 1 1 1 1 1 1 4775.9 13386 2914 13247 20556 26809 26809 1 LVSGWVKPIIIGR Unmodified 1436.8868 0.88675515 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 1 9 0 1 66.805 66.805 3 3.9246E-06 18398 TMT1-8 101.45 81.956 324.58 397.73 294.06 258.91 353.54 415.25 306 399 306 259 363 399 1 1 1 1 1 1 41554 13387 307 13248 20557 26810 26810 1 LVSGYDSYGNICGQK Unmodified 1659.7563 0.75627084 2278 Q8WWI5-3;Q8WWI5-2;Q8WWI5 SLC44A1 Choline transporter-like protein 1 yes no 0 0 0 0 0 6 0 1 55.599 55.599 3 6.9371E-15 16359 TMT1-5 116.19 91.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13388 2278 13249 20558 26811 26811 1 LVSIDSK Unmodified 760.43307 0.43306943 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 6 2.45 1 2 2 1 49.976 49.976 2 0.0012287 14275 TMT1-5 100.45 46.741 6618.1 8063.6 8527.5 6819.3 8654.1 11087 6253 8132 8640 6853 8937 10632 7 7 7 7 7 7 887050 13389 270;831;1771 13250 20559;20560;20561;20562;20563;20564 26812;26813;26814;26815;26816;26817;26818;26819 26815 8 LVSIGAEEIVDGNAK Unmodified 1513.7988 0.79878758 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 0 5 0 2 64.833 64.833 3;4 9.3292E-08 19772 TMT1-4 108.97 87.421 284.87 387.48 304.11 221.52 333.79 400.89 269 387 313 225 342 385 3 3 3 3 3 3 103070 13390 195 13251 20565;20566 26820;26821;26822 26820 3 LVSIGAEEIVDGNVK Unmodified 1541.8301 0.83008771 672;1022 P12814;P12814-3;P12814-2;P12814-4;P35609-2;P35609 ACTN1;ACTN2 Alpha-actinin-1;Alpha-actinin-2 no no 0 0 0 0 0 5 0 3 66.696 66.696 3;4 8.0397E-35 20862 TMT1-4 195.87 156.86 1952.1 2653.5 2382.9 2003.7 2373.5 2706 1845 2655 2441 2004 2446 2602 8 8 8 8 8 8 383470 13391 672;1022 13252 20567;20568;20569 26823;26824;26825;26826;26827;26828;26829;26830 26825 8 LVSIPELLSAVK Unmodified 1267.7751 0.77513901 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 9 0 2 85.034 85.034 2;3 0.0033033 25582 TMT1-8 61.435 32.692 54.179 49.787 49.276 59.397 56.384 45.295 51 51 51 58 58 44 2 2 2 2 2 2 5992.3 13392 2940 13253 20570;20571 26831;26832 26832 2 LVSLDSGLLNSLGALTELQFHR Unmodified 2382.2907 0.2907093 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 9 0 2 91.187 91.187 3 2.0776E-67 27622 TMT1-8 209.43 182.65 68.336 133.78 123.4 53.887 114.43 128.92 65 132 124 58 116 124 3 3 3 3 3 3 115490 13393 1067 13254 20572;20573 26833;26834;26835 26834 3 LVSLSAQNLVDCSTEK Unmodified 1762.8771 0.87711426 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 0 6 0 1 64.927 64.927 3 1.998E-16 20004 TMT1-5 139.49 117.62 84.323 170.15 110.72 93.33 149.54 150.3 80 167 116 94 152 145 1 1 1 1 1 1 31724 13394 889 13255 20574 26836 26836 1 LVSLYFDTK Unmodified 1084.5805 0.58046195 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 8 0 1 69.508 69.508 2 1.2747E-06 21276 TMT1-7 166.16 96.964 61.379 87.263 69.789 81.969 69.732 83.29 58 87 73 80 73 80 1 1 1 1 1 1 11879 13395 54 13256 20575 26837 26837 1 LVSNHSLHETSSVFVDSLTK Unmodified 2199.1172 0.11716161 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8.5 0.5 1 1 55.903 55.903 4 7.0092E-25 14041 TMT1-8 130 104.8 462.03 587.57 477.03 446.52 491.42 565.88 436 589 494 443 508 544 4 4 4 4 4 4 90808 13396 831 13257 20576;20577 26838;26839;26840;26841 26840 4 LVSQDNFGFDLPAVEAATK Unmodified 2021.0106 0.010571271 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 6 0 1 78.023 78.023 2 3.5909E-15 25183 TMT1-5 105.58 84.522 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13397 1546 13258 20578 26842 26842 1 LVSQKPK Unmodified 798.49634 0.49633839 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 1 9 0 1 36.146 36.146 3 0.018427 6846 TMT1-8 67.032 36.847 218.72 303.48 312.87 194.15 308.36 264.1 207 304 315 200 312 256 1 1 1 1 1 1 47393 13398 700 13259 20579 26843 26843 1 LVSSDPEINTK Unmodified 1201.619 0.6190323 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 5 0 1 48.793 48.793 3 1.305E-05 13509 TMT1-4 114.89 51.818 217.25 265.58 230.96 165.17 191.07 246.12 205 267 236 167 198 236 1 1 1 1 1 1 20887 13399 2956 13260 20580 26844 26844 1 LVSSPCCIVTSTYGWTANMER Unmodified 2431.097 0.097036567 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 8 0 1 71.992 71.992 3 0.00013564 22270 TMT1-7 53.188 47.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13400 561 13261 20581 26845 26845 1 LVTDEDVFPTK Unmodified 1262.6394 0.63943339 2065 Q70IA6-2;Q70IA6;Q70IA6-3 MOB2 MOB kinase activator 2 yes no 0 0 0 0 0 5 0 1 62.183 62.183 3 0.0033398 18776 TMT1-4 73.781 50.754 84.49 154.42 96.075 103.21 135.49 119.79 80 152 102 102 138 116 1 1 1 1 1 1 13575 13401 2065 13262 20582 26846 26846 1 LVTDLTK Unmodified 788.46437 0.46436956 28;29 CON__P02768-1;P02768;P02768-2;CON__P02769 ALB Serum albumin no no 0 0 0 0 0 5.25 2.49 1 1 2 53.719 53.719 2;3 0.0012234 15513 TMT1-5 132.09 27.646 917.47 1241.7 1643.1 954.17 1186.8 1475.6 870 1251 1631 983 1225 1416 4 4 4 4 4 4 534220 + 13402 28;29 13263 20583;20584;20585;20586 26847;26848;26849;26850 26848 4 LVTDQNISENWR Unmodified 1473.7212 0.72120596 877 P24666;P24666-4 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 5 0 1 54.973 54.973 2 1.4229E-18 15972 TMT1-4 187.31 146.43 53.882 72.706 79.707 49.815 62.578 90.956 51 73 80 51 65 87 1 1 1 1 1 1 11820 13403 877 13264 20587 26851 26851 1 LVTLEEFLASTQR Unmodified 1505.809 0.80895834 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 8 0 2 82.929 82.929 2;3 3.8812E-06 26454 TMT1-7 111.12 94.59 38.706 75.065 103.56 47.368 117.14 89.399 37 73 102 51 117 87 3 2 3 3 3 3 20551 13404 1572 13265 20588;20589 26852;26853;26854 26853 3 LVTLEEFLK Unmodified 1090.6274 0.62741214 1511 P80303-2;P80303 NUCB2 Nucleobindin-2;Nesfatin-1 yes no 0 0 0 0 0 7 0 1 80.225 80.225 2 1.0252E-05 25352 TMT1-6 157.91 114.1 169.05 271.27 212.42 142.09 198.57 210.73 160 269 218 145 203 203 2 2 2 2 2 2 26191 13405 1511 13266 20590 26855;26856 26855 2 LVTLLQEVDTIEQETIKPLDDCQK Unmodified 2827.4525 0.45249083 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 1 6 0 1 92.963 92.963 4 2.1588E-09 30743 TMT1-5 82.635 66.234 15.859 21.986 21.092 29.476 51.237 21.99 15 22 22 29 51 22 1 1 1 1 1 1 4251.7 13406 2135 13267 20591 26857 26857 1 LVTLPVSFAQLK Unmodified 1314.7911 0.79112343 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 0 9 0 1 77.596 77.596 3 6.4216E-10 22680 TMT1-8 143.97 106.5 199.98 276.19 238.77 220.4 193.64 280.16 189 276 246 218 204 268 2 2 2 2 2 2 39014 13407 2362 13268 20592 26858;26859 26859 2 LVTMQIWDTAGQER Unmodified 1646.8086 0.80864076 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 7 0 1 68.091 68.091 3 1.9956E-05 20693 TMT1-6 93.649 62.421 115.86 121.7 81.579 104.82 96.114 167.82 109 123 87 102 102 160 1 1 1 1 1 1 58589 13408 1237 13269 20593 26860 26860 1 LVTQDTENELK Unmodified 1288.6511 0.65106071 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 0 4 0 1 50.185 50.185 2 7.8938E-06 14358 TMT1-3 126.66 103.92 46.209 87.88 94.045 48.424 91.137 144.51 44 87 94 51 94 138 1 1 1 1 1 1 9271.3 13409 1093;1253 13270 20594 26861 26861 1 LVTQDTENELKK Unmodified 1416.746 0.74602373 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 5 0 1 47.248 47.248 3 0.00086205 12924 TMT1-4 84.173 54.238 207.4 344.48 197.41 254.68 245.72 271.21 196 340 213 248 255 261 1 1 1 1 1 1 18125 13410 1093;1253 13271 20595 26862 26862 1 LVTSPCCIVTSTYGWTANMER Unmodified 2445.1127 0.11268663 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 8 0 1 73.428 73.428 3 2.8674E-10 22893 TMT1-7 94.42 81.491 61.29 95.65 77.612 65.098 70.251 90.737 58 95 80 65 73 87 2 2 2 2 2 2 33487 13411 545 13272 20596 26863;26864 26864 2 LVTTVTEIAG Unmodified 1002.5597 0.55972651 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 4.8 2.32 1 1 1 1 1 70.218 70.218 2 8.9583E-05 21928 TMT1-4 140.53 108.31 700.41 1113.4 902.52 774.23 838.53 1107.1 663 1105 931 772 872 1061 8 8 8 8 8 8 902140 13412 1555;1556 13273 20597;20598;20599;20600;20601 26865;26866;26867;26868;26869;26870;26871;26872;26873 26869 9 LVVDLTDIDPDVAYSSVPYEK Unmodified 2337.1628 0.1627744 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 5.33 0.471 2 1 83.488 83.488 3;4 1.9564E-07 27090 TMT1-4 85.231 72.29 84.705 132.36 78.632 121.07 112.98 111.9 80 131 80 117 117 108 3 3 2 3 3 3 39463 13413 608 13274 20602;20603;20604 26874;26875;26876 26874 3 LVVECVMNNVTCTR Unmodified 1693.795 0.79498131 1554 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 0 0 8 0 1 64.031 64.031 3 0.0064466 19110 TMT1-7 57.475 42.443 84.582 123.38 106.9 71.964 77.265 90.537 80 123 109 73 80 87 1 1 1 1 1 1 14106 13414 1554 13275 20605 26877 26877 1 LVVGGLLSPEEDQSLLLSQFR Unmodified 2299.2424 0.24236212 2551 Q9BVI4 NOC4L Nucleolar complex protein 4 homolog yes yes 0 0 0 0 0 7 0 1 88.597 88.597 3 0.00027825 28554 TMT1-6 48.616 38.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13415 2551 13276 20606 26878 26878 1 LVVGHDLK Unmodified 879.5178 0.51780212 2367 Q96AZ6 ISG20 Interferon-stimulated gene 20 kDa protein yes yes 0 0 0 0 0 7 0 1 43.268 43.268 3 0.0010891 10864 TMT1-6 116.37 59.194 61.353 103.38 60.514 74.16 107.53 89.674 58 102 65 73 109 87 1 1 1 1 1 1 6055 13416 2367 13277 20607 26879 26879 1 LVVLGSGGVGK Unmodified 984.59678 0.59678072 1384;1447 P61224;P61224-3;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A no no 0 0 0 0 0 5 4 1 1 57.921 57.921 2 1.3698E-22 14899 TMT1-8 195.7 124.79 6645.8 8059.4 7652.9 5517.8 7230.7 8101 6274 8116 7778 5590 7421 7793 6 6 6 6 6 6 955600 13417 1384;1447 13278 20608;20609 26880;26881;26882;26883;26884;26885 26884 6 LVVNLLQLSK Unmodified 1125.7121 0.71214483 1692 Q13315 ATM Serine-protein kinase ATM yes yes 0 0 0 0 0 9 0 1 76.6 76.6 2 0.0032813 22262 TMT1-8 96.342 64.211 38.08 58.431 42.647 28.348 42.897 53.142 36 58 44 29 44 51 1 1 1 1 1 1 2370.5 13418 1692 13279 20610 26886 26886 1 LVVPASQCGSLIGK Unmodified 1427.7806 0.7806351 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5;P57721-2;P57721-3;P57721-5;P57721-4;P57721 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 yes no 0 0 0 0 0 9 0 1 60.492 60.492 2 1.8837E-12 15917 TMT1-8 134.08 70.035 54.071 73.231 47.529 67.045 62.042 83.51 51 73 51 65 65 80 1 1 1 1 1 1 16565 13419 1844 13280 20611 26887 26887 1 LVVPATQCGSLIGK Unmodified 1441.7963 0.79628516 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 9 0 2 61.744 61.744 3;4 4.732E-10 16375 TMT1-8 110.9 24.492 476.61 652.23 496.52 381.78 385.11 641.4 450 651 513 383 406 612 3 3 3 3 3 3 123630 13420 1843 13281 20612;20613 26888;26889;26890 26888 3 LVVSESYDTYISR Unmodified 1530.7566 0.75658842 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 5 0 1 59.581 59.581 2 1.4809E-12 17731 TMT1-4 158.3 133.83 53.954 88.017 54.584 58.794 71.604 59.785 51 87 58 58 73 58 1 1 1 1 1 1 14636 13421 2263 13282 20614 26891 26891 1 LVVSTQTALA Unmodified 1001.5757 0.57571092 29 CON__P02769 yes yes 0 0 0 0 0 7 0 1 62.442 62.442 2 0.001012 18453 TMT1-6 103.92 81.296 37.877 34.124 97.28 49.146 42.49 37.164 36 36 94 51 44 36 1 1 1 1 1 1 12400 + 13422 29 13283 20615 26892 26892 1 LVVVDENDVVK Unmodified 1227.6711 0.67106787 1299 P54619-2;P54619;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 0 4 0 1 59.567 59.567 2 2.6712E-11 18045 TMT1-3 136.96 92.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13423 1299 13284 20616 26893 26893 1 LVVVDFSATWCGPCK Unmodified 1737.8218 0.82184798 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 0 9 0 3 76.189 76.189 2;3;4 4.4647E-22 22086 TMT1-8 152.54 134.4 229.4 297.22 326 198.08 290.17 331.77 217 299 327 204 297 319 4 4 4 4 4 4 35277 13424 632 13285 20617;20618;20619 26894;26895;26896;26897 26894 4 LVVVGAGGVGK Unmodified 954.58622 0.58621603 412 P01111;P01116-2;P01116;P01112-2;P01112 NRAS;KRAS;HRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed yes no 0 0 0 0 0 9 0 1 54.369 54.369 2 1.0653E-29 13517 TMT1-8 206.5 131.19 181.24 235.91 177.83 163.2 232.01 214.04 171 236 185 163 236 207 2 2 2 2 2 2 15372 13425 412 13286 20620 26898;26899 26899 2 LVVVGGGGVGK Unmodified 940.57057 0.57056597 628 P10301;P62070;P62070-4 RRAS;RRAS2 Ras-related protein R-Ras;Ras-related protein R-Ras2 yes no 0 0 0 0 0 9 0 1 52.489 52.489 2 2.3287E-08 12779 TMT1-8 143.61 90.443 107.94 168.57 110.29 102.38 134.72 143.26 102 167 116 102 138 138 1 1 1 1 1 1 11830 13426 628 13287 20621 26900 26900 1 LVVVLCNLKPQK Unmodified 1409.8428 0.84284142 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 9 0 1 64.108 64.108 3 0.00013976 17417 TMT1-8 93.843 70.617 291.42 380.87 291.01 232.45 259.2 334.79 275 381 301 233 269 321 2 2 2 2 2 2 24695 13427 1297 13288 20622 26901;26902 26902 2 LVWVPSDK Unmodified 942.51747 0.51746776 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 8.5 0.5 1 1 61.589 61.589 2 0.0042114 18228 TMT1-7 126.67 71.137 2876.7 3755.8 3487.6 2818.1 3341.2 3653.8 2718 3767 3561 2826 3438 3517 4 4 4 4 4 4 691140 13428 1019 13289 20623;20624 26903;26904;26905;26906 26904 4 LVYLNEAWK Unmodified 1134.6073 0.6073454 2160 Q8N0U8 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes yes 0 0 0 0 0 8 0 1 67.432 67.432 2 0.0034616 20474 TMT1-7 70.908 34.527 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13429 2160 13290 20625 26907 26907 1 LVYLYLMNYAK Unmodified 1389.7366 0.73664502 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 9 0 1 82.968 82.968 3 5.5736E-07 24672 TMT1-8 120.12 85.587 46.551 65.085 55.975 59.287 40.961 68.121 44 65 58 58 44 65 1 1 1 1 1 1 8619.1 13430 1467;1637 13291 20626 26908 26908 1 LVYQNIFTAMQAMIR Unmodified 1797.927 0.92698176 1211 P50148;P29992;O95837 GNAQ;GNA11;GNA14 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14 yes no 0 0 0 0 0 9 0 1 91.925 91.925 3 5.7831E-08 28082 TMT1-8 106.58 87.982 23.026 44.261 59.984 0 13.836 53.971 22 44 58 0 15 51 1 1 1 0 1 1 11128 13431 1211 13292 20627 26909 26909 1 LVYVYLVR Unmodified 1023.6117 0.6117025 51 O00203-3;O00203;Q13367;Q13367-4 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 0 0 0 0 0 9 0 1 66.729 66.729 2 0.026243 18397 TMT1-8 73.039 39.776 38.024 43.167 64.932 58.739 41.756 45.712 36 44 65 58 44 44 1 1 1 1 1 1 4232.2 13432 51 13293 20628 26910 26910 1 LWADHGVQACFGR Unmodified 1515.7041 0.70411611 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 8 0 1 51.28 51.28 3 1.4422E-08 14064 TMT1-7 124.12 119.73 129.56 234.65 207.21 142.67 184.4 196.21 123 232 211 145 189 189 2 2 2 2 2 2 58839 13433 480 13294 20629 26911;26912 26911 2 LWAHVYAGAPVSSPEYTK Unmodified 1974.984 0.98396259 1376 P61086;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 8 0 1 57.904 57.904 3 3.3544E-14 16731 TMT1-7 120.77 103.84 68.991 94.586 46.518 59.28 71.325 67.255 65 94 51 58 73 65 1 1 1 1 1 1 23667 13434 1376 13295 20630 26913 26913 1 LWAYLTIQQLLEQTVSASDADQQALR Unmodified 2960.5244 0.52435064 1784 Q14624-4;Q14624-3;Q14624-2;Q14624 ITIH4 Inter-alpha-trypsin inhibitor heavy chain H4;70 kDa inter-alpha-trypsin inhibitor heavy chain H4;35 kDa inter-alpha-trypsin inhibitor heavy chain H4 yes no 0 0 0 0 0 9 0 1 104.31 104.31 4 3.161E-05 32512 TMT1-8 50.271 37.837 23.534 14.373 0 16.114 14.95 0 22 15 0 15 15 0 1 1 0 1 1 0 1275.2 13435 1784 13296 20631 26914 26914 1 LWCTYHEK Unmodified 1135.5121 0.51206481 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 0 7 0 1 44.715 44.715 3 0.0069845 11390 TMT1-6 78.516 59.422 92.485 69.994 86.232 72.636 107.05 105.68 87 73 87 73 109 102 1 1 1 1 1 1 12101 13436 716 13297 20632 26915 26915 1 LWDELQATTK Unmodified 1203.6136 0.61355299 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 65.087 65.087 3 0.019523 20065 TMT1-5 55.401 10.537 115.4 120.42 159.84 122.96 103.96 128.15 109 123 160 123 109 123 1 1 1 1 1 1 21663 13437 651 13298 20633 26916 26916 1 LWDFQGFECIR Unmodified 1469.6762 0.67617003 1107 P43034;Q5IS43;P43034-2 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 0 8 0 1 76.535 76.535 2 0.00010911 24027 TMT1-7 112.83 82.579 61.494 41.173 89.496 41.692 56.685 60.21 58 44 87 44 58 58 1 1 1 1 1 1 11933 13438 1107 13299 20634 26917 26917 1 LWDLTTGTTTR Unmodified 1263.6459 0.64591575 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 61.232 61.232 2 1.4355E-06 18083 TMT1-7 139.39 106.76 223.74 306.28 188.83 253.86 258.01 310.31 211 305 203 247 268 298 2 2 2 2 2 2 60310 13439 1478 13300 20635 26918;26919 26919 2 LWDVSCDLLGLPID Unmodified 1614.7963 0.79634474 2246 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 6 0 1 105.27 105.27 2 3.2421E-05 34086 TMT1-5 101.11 94.865 7.4235 7.8773 8.0252 2.7101 4.8174 8.3905 7 8 8 3 5 8 2 2 2 2 2 2 3795.8 13440 2246 13301 20636 26920;26921 26920 2 LWEEQLAAAK Unmodified 1157.6081 0.60807369 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 6 0 2 61.374 61.374 2;3 0.0013486 18661 TMT1-5 88.681 56.075 378.71 510.34 659.26 525.54 536.16 589.12 359 514 661 526 555 567 2 2 2 2 2 2 154360 13441 700 13302 20637;20638 26922;26923 26923 2 LWEGLTELVTATGNYGNYR Unmodified 2156.0538 0.05383307 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 8 0 1 88.507 88.507 3 1.8801E-30 28601 TMT1-7 142.4 134.69 31.547 51.052 64.871 50.222 87.96 51.856 30 51 65 51 88 51 2 2 2 2 2 2 24254 13442 2085 13303 20639 26924;26925 26925 2 LWEIIAR Unmodified 899.52289 0.52288749 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 8.5 0.5 1 1 68.662 68.662 2 0.011219 21027 TMT1-7 104.76 32.409 254.48 239.43 308.48 229.17 319.87 308.54 240 246 309 232 326 298 2 2 2 2 2 2 54444 13443 772 13304 20640;20641 26926;26927 26926 2 LWEPLVEEPPADQWK Unmodified 1835.9094 0.90940066 1902 Q16718-2;Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 0 5.5 0.5 1 1 76.672 76.672 3 7.1743E-15 24507 TMT1-4 131.53 106.34 45.898 125.87 114.25 102.4 120.89 89.292 44 123 117 102 123 87 2 2 2 2 2 2 21281 13444 1902 13305 20642;20643 26928;26929 26928 2 LWEVAGQWQK Unmodified 1243.635 0.63495714 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 8.5 0.5 1 1 67.203 67.203 3 0.00085065 18549 TMT1-8 90.108 44.972 131.15 173.42 172.12 114.19 124.21 220.32 124 174 174 116 131 210 2 2 2 2 2 2 23209 13445 1187 13306 20644;20645 26930;26931 26931 2 LWFTLDHPPK Unmodified 1252.6604 0.66044361 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 9 0 1 62.855 62.855 3 0.0017724 16833 TMT1-8 77.677 44.731 61.241 86.878 93.341 63.889 84.709 97.787 58 87 94 65 87 94 1 1 1 1 1 1 10174 13446 2867 13307 20646 26932 26932 1 LWGLEAQK Unmodified 943.51272 0.51271674 2837 Q9UBE0;Q9UBE0-2;Q9UBE0-3 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 0 8 0 1 59.637 59.637 2 0.0061809 17346 TMT1-7 108.7 70.404 216.29 154.63 125.14 140.01 179.03 203.83 203 161 131 138 184 196 1 1 1 1 1 1 12008 13447 2837 13308 20647 26933 26933 1 LWGTQDVSQDIQEMKDESAR Unmodified 2335.075 0.075038797 642 P11169;Q8TDB8-4;Q8TDB8-2;Q8TDB8;Q8TDB8-5 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 0 0 0 0 1 5 0 2 69.574 69.574 3;4 1.2067E-17 21657 TMT1-4 124.37 116.28 396.14 556.11 397 325.67 371.25 602.36 374 554 413 326 389 575 3 3 3 3 3 3 165240 13448 642 13309 20648;20649 26934;26935;26936 26934 3 LWGVIDVK Unmodified 928.5382 0.53820321 2862 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 69.734 69.734 2 0.028416 19544 TMT1-8 71.877 37.625 53.672 87.232 102.72 48.014 85.439 97.766 51 87 102 51 87 94 1 1 1 1 1 1 10466 13449 2862 13310 20650 26937 26937 1 LWIDQSGEIDIVNHK Unmodified 1765.8999 0.89989861 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 6 0 1 65.224 65.224 3 0.00020532 20153 TMT1-5 57.973 9.5678 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13450 839 13311 20651 26938 26938 1 LWISNGGLADIFTVFAK Unmodified 1850.9931 0.99307071 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 2 99.474 99.474 3 2.2988E-07 30743 TMT1-8 79.013 56.134 23.049 51.88 49.661 51.445 71.151 52.336 22 51 51 51 72 51 2 2 2 2 2 2 11420 13451 1194 13312 20652;20653 26939;26940 26939 2 LWLAALK Unmodified 813.51126 0.51126017 2827 Q9P2D3-3;Q9P2D3 HEATR5B HEAT repeat-containing protein 5B yes no 0 0 0 0 0 9 0 1 72.019 72.019 2 0.012659 20438 TMT1-8 112.27 53.35 30.406 74.683 56.164 43.946 42.436 45.693 29 73 58 44 44 44 1 1 1 1 1 1 3201.3 13452 2827 13313 20654 26941 26941 1 LWLDNTENDLNQGDDHGFSPLHWACR Unmodified 3109.3737 0.37368043 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 6 0 1 69.68 69.68 4 6.6261E-45 21874 TMT1-5 153.59 137.86 177.06 162.06 220.7 126.69 177.31 180.42 167 167 219 131 181 174 2 2 2 2 2 2 125890 13453 1700 13314 20655 26942;26943 26942 2 LWLEDRTPEALLQVR Unmodified 1838.005 0.0050323835 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 1 7 0 1 67.872 67.872 3 1.3549E-14 20637 TMT1-6 130.95 99.072 316.35 352.89 273.04 233.34 210.82 402.26 298 356 283 232 225 383 2 2 2 2 2 2 101440 13454 711 13315 20656 26944;26945 26945 2 LWLFGYDEQR Unmodified 1325.6404 0.64043645 2742 Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 0 8 0 1 74.704 74.704 2 0.0016987 23375 TMT1-7 101.72 53.082 68.838 86.604 79.126 42.439 49.835 45.482 65 87 80 44 51 44 1 1 1 1 1 1 22486 13455 2742 13316 20657 26946 26946 1 LWLLDDSK Unmodified 988.52295 0.52294707 187;742 O43639;P16333 NCK2;NCK1 Cytoplasmic protein NCK2;Cytoplasmic protein NCK1 no no 0 0 0 0 0 7.67 0.471 1 2 70.735 70.735 2;3 0.0012132 21778 TMT1-7 107.66 58.318 252.43 395.44 340.7 267.65 322.52 423.59 239 393 349 269 334 406 3 3 3 3 3 3 34720 13456 187;742 13317 20658;20659;20660 26947;26948;26949;26950 26949 4 LWMAAMK Unmodified 849.4241 0.42410143 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 9 0 1 64.509 64.509 3 0.0014568 17505 TMT1-8 106.75 54.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13457 1506 13318 20661 26951 26951 1 LWNLLMPTK Unmodified 1114.6209 0.62088698 2156 Q8IZ81 ELMOD2 ELMO domain-containing protein 2 yes yes 0 0 0 0 0 9 0 1 80.13 80.13 2 0.0099232 23629 TMT1-8 78.334 35.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13458 2156 13319 20662 26952 26952 1 LWNTLGVCK Unmodified 1089.5641 0.56410038 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 9 0 2 64.032 64.032 2;3 0.0070572 17271 TMT1-8 63.283 42.506 176.67 278.62 187.03 166.92 237.49 171.25 167 276 196 167 240 167 2 2 2 2 2 2 54646 13459 1478 13320 20663;20664 26953;26954 26954 2 LWQTVVGK Unmodified 929.53345 0.53345218 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 9 0 1 62.42 62.42 2 0.0013016 16665 TMT1-8 147.19 70.358 236.32 239.83 293.85 194.79 276.65 303.38 223 245 294 199 283 292 1 1 1 1 1 1 23249 13460 3000 13321 20665 26955 26955 1 LWSSLQTHCCSQNK Unmodified 1747.777 0.77702306 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 9 0 1 46.686 46.686 3 0.00040375 10475 TMT1-8 67.838 50.619 53.603 103.23 100.74 70.923 152.15 104.39 51 102 102 73 152 102 1 1 1 1 1 1 7999.2 13461 634 13322 20666 26956 26956 1 LWSYLQELLQSR Unmodified 1534.8144 0.81437807 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 9 0 1 93.764 93.764 3 0.00075671 28778 TMT1-8 72.891 49.215 7.3427 29.883 28.578 21.786 29.603 22.607 7 29 29 22 30 22 1 2 2 2 2 2 4164.8 13462 651 13323 20667 26957;26958 26957 2 LWTLVSEQTR Unmodified 1231.6561 0.65608651 1131 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 0 8.5 0.5 1 1 65.252 65.252 2 2.8756E-05 17783 TMT1-8 121.64 76.303 84.551 123.3 112.08 125.94 96.755 120.9 80 123 116 123 102 116 1 1 1 1 1 1 25033 13463 1131 13324 20668;20669 26959;26960 26960 2 LWVGGLGPWVPLAALAR Unmodified 1775.0246 0.024645614 2455 Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 0 0 9 0 1 94.524 94.524 3 7.4745E-05 29068 TMT1-8 67.234 54.034 7.3005 15.09 22.594 6.0191 15.172 7.0291 7 15 22 7 15 7 1 1 1 1 1 1 2372.7 13464 2455 13325 20670 26961 26961 1 LWYCDLQQESSGIAGILK Unmodified 2080.0299 0.029926505 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 7.5 0.5 1 1 82.748 82.748 3 1.4227E-06 26446 TMT1-7 89.866 71.949 76.212 117.01 76.283 64.488 106.91 120.61 72 116 80 65 109 116 2 2 2 2 2 2 15810 13465 1150 13326 20671;20672 26962;26963 26963 2 LWYTLDR Unmodified 965.49707 0.49706667 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 8 0 1 61.099 61.099 2 1.0385E-08 17986 TMT1-7 178.84 109.67 766.23 855.23 1059.9 714.04 808.83 1047.2 724 869 1060 725 839 1004 1 1 1 1 1 1 157250 13466 388 13327 20673 26964 26964 1 LYAGSTVK Unmodified 837.45962 0.45961853 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 0 7 0 1 43.599 43.599 2 0.0050831 11014 TMT1-6 120.46 38.499 68.902 94.338 61.753 57.692 107.48 113.13 65 94 65 58 109 109 1 1 1 1 1 1 9294.1 13467 1912 13328 20674 26965 26965 1 LYASILQQK Unmodified 1062.6073 0.6073454 97 O14617-4;O14617;O14617-5;O14617-3;O14617-2 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 9 0 1 60.753 60.753 3 0.0013376 16025 TMT1-8 94.302 46.479 84.757 85.015 109.97 54.811 107.87 105.65 80 87 109 58 109 102 1 1 1 1 1 1 7667.3 13468 97 13329 20675 26966 26966 1 LYAVHQEGNK Unmodified 1157.5829 0.58292157 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5.5 0.5 1 1 35.609 35.609 3 2.5929E-05 8430 TMT1-5 135.86 99.434 550.73 547.93 390.12 400.69 356.44 567.6 518 556 410 394 377 542 2 2 2 2 2 2 80872 13469 1232 13330 20676;20677 26967;26968 26968 2 LYCIYVAIGQK Unmodified 1326.7006 0.70059386 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 9 0 2 70.892 70.892 2;3 3.0798E-22 20016 TMT1-8 192.6 152.6 184.14 269.34 203.14 181.2 240.46 278.83 174 268 211 181 247 268 2 2 2 2 2 2 64142 13470 888 13331 20678;20679 26969;26970 26969 2 LYCPVEFSK Unmodified 1141.5478 0.54778161 1274 P52788-2;P52788 SMS Spermine synthase yes no 0 0 0 0 0 7 0 1 59.694 59.694 3 0.0089324 17331 TMT1-6 67.563 32.052 84.906 85.428 84.658 88.04 106.63 97.161 80 87 87 87 109 94 1 1 1 1 1 1 8961.8 13471 1274 13332 20680 26971 26971 1 LYDAYELK Unmodified 1013.507 0.50696266 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 5.5 0.5 1 1 58.279 58.279 2 0.00019261 17261 TMT1-4 153.78 49.946 678.25 1227.3 923.82 631 831.79 1251.2 643 1211 951 642 864 1196 2 2 2 2 2 2 151210 13472 578 13333 20681;20682 26972;26973 26972 2 LYDDIDFDIEEFAK Unmodified 1731.7879 0.78794812 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 4.5 0.5 1 1 85.527 85.527 3 1.9916E-07 28175 TMT1-3 108.17 88.847 78.315 78.967 115.8 102.89 90.208 98.696 74 81 116 102 94 95 3 3 3 3 3 3 14560 13473 2434 13334 20683;20684 26974;26975;26976 26974 3 LYDIDVAK Unmodified 935.4964 0.49639797 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 0 5.5 0.5 1 1 58.113 58.113 2 0.0055907 17151 TMT1-4 116.73 62.568 399.63 719.8 392.88 294.3 599.59 482.84 378 708 417 301 602 469 2 2 2 2 2 2 44607 13474 1441 13335 20685;20686 26977;26978 26977 2 LYDLDKDEK Unmodified 1137.5554 0.55536941 2481 Q99653 CHP1 Calcineurin B homologous protein 1 yes yes 0 0 0 0 1 5 0 1 49.225 49.225 3 0.0057838 13698 TMT1-4 64.439 35.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13475 2481 13336 20687 26979 26979 1 LYDPGQQYASHVR Unmodified 1532.7372 0.73719038 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 41.633 41.633 3 6.1367E-05 10658 TMT1-4 97.297 74.248 214.57 320.35 274.84 248.32 280.02 346.99 203 319 283 247 290 333 2 2 2 2 2 2 49909 13476 2309 13337 20688 26980;26981 26980 2 LYEAYLPETFR Unmodified 1400.6976 0.69761697 2265 Q8WU79-3;Q8WU79-2;Q8WU79 SMAP2 Stromal membrane-associated protein 2 yes no 0 0 0 0 0 6 0 1 68.412 68.412 2 0.019294 21407 TMT1-5 72.434 44.035 84.829 70.105 110.48 63.285 62.472 76.035 80 73 109 65 65 73 1 1 1 1 1 1 11467 13477 2265 13338 20689 26982 26982 1 LYEDNQTSR Unmodified 1124.5098 0.5098162 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 3 0 1 33.841 33.841 2 0.0087836 8863 TMT1-2 90.601 62.519 38.107 43.397 50.816 35.238 57.495 45.263 36 44 51 36 58 44 1 1 1 1 1 1 5057.5 13478 785 13339 20690 26983 26983 1 LYEEGSNKR Unmodified 1094.5356 0.53563702 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 1 5 0 1 32.186 32.186 3 0.021136 6919 TMT1-4 63.426 26.235 385.15 604.7 398.54 396.76 480.61 551.27 364 599 420 393 495 530 1 1 1 1 1 1 22919 13479 892 13340 20691 26984 26984 1 LYELIITR Unmodified 1019.6015 0.60153174 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7 0 1 67.673 67.673 2 0.006069 20559 TMT1-6 110.22 34.975 146.33 180.37 140.49 108.69 110.34 174.87 138 181 145 109 116 167 1 1 1 1 1 1 51705 13480 536 13341 20692 26985 26985 1 LYEPDQLQELK Unmodified 1374.7031 0.70309628 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 4 0 1 62.388 62.388 3 0.00080644 19153 TMT1-3 62.466 24.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13481 2795 13342 20693 26986 26986 1 LYEPVVIPVGK Unmodified 1212.7118 0.71181048 799 P19878-3;P19878 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 7 0 1 66.753 66.753 2 0.0042712 20134 TMT1-6 88.496 57.206 46.288 111.84 60.453 65.85 84.619 97.789 44 109 65 65 87 94 1 1 1 1 1 1 13019 13482 799 13343 20694 26987 26987 1 LYEQILAENEK Unmodified 1348.6874 0.68744622 118 O14974-4;O14974;O14974-3;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 4 0 1 62.377 62.377 3 0.00023109 19126 TMT1-3 99.5 68.272 61.466 87.506 54.904 51.448 54.367 114.64 58 87 58 51 58 109 1 1 1 1 1 1 17416 13483 118 13344 20695 26988 26988 1 LYEQLSGK Unmodified 936.49165 0.49164694 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 6 0 1 51.176 51.176 2 0.0030376 14595 TMT1-5 133.58 70.923 665.91 1376.6 888.79 853.21 1215.6 1442.8 632 1350 936 850 1247 1386 1 1 1 1 1 1 137120 13484 954 13345 20696 26989 26989 1 LYFGALFK Unmodified 957.53239 0.53238955 2707 Q9NQ75;Q9NQ75-3 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 9 0 1 75.885 75.885 2 0.0072092 21921 TMT1-8 115.3 48.243 131.09 181.87 175.98 186.17 120.37 205.5 124 182 181 182 130 196 2 2 2 2 2 2 17220 13485 2707 13346 20697 26990;26991 26990 2 LYGDDALDNALQTFIK Unmodified 1795.8992 0.89922991 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 6 0 1 86.359 86.359 3 0.023237 28438 TMT1-5 44.005 25.867 46.838 34.584 33.605 68.142 47.883 67.924 44 36 36 65 51 65 1 1 1 1 1 1 5443.8 13486 2876 13347 20698 26992 26992 1 LYGFLQSTGSLNPLLASFFSK Unmodified 2289.2045 0.20452005 2936 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 0 0 0 0 0 9 0 1 100.62 100.62 4 0.0080847 31259 TMT1-8 41.711 17.424 7.3955 22.909 0 40.206 12.501 39.085 7 22 0 37 15 37 1 1 0 1 1 1 2398.3 13487 2936 13348 20699 26993 26993 1 LYGHWVK Unmodified 901.48102 0.48102268 726 P15735 PHKG2 Phosphorylase b kinase gamma catalytic chain, liver/testis isoform yes yes 0 0 0 0 0 9 0 1 46.295 46.295 3 0.023664 10333 TMT1-8 56.51 0 37.879 74.063 63.098 58.306 70.564 90.728 36 73 65 58 73 87 1 1 1 1 1 1 2681.9 13488 726 13349 20700 26994 26994 1 LYGPDVGQPR Unmodified 1100.5615 0.56145784 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 5 0 1 44.339 44.339 3 0.00044494 11762 TMT1-4 99.815 71.606 30.455 74.818 47.909 59.049 79.178 52.107 29 73 51 58 80 51 1 1 1 1 1 1 8521.2 13489 2951 13350 20701 26995 26995 1 LYGPLCGYYLGR Unmodified 1430.7017 0.70165649 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 9 0 1 66.596 66.596 2 6.0082E-12 18306 TMT1-8 159.46 120.65 46.568 50.022 65.905 26.69 57.375 60.191 44 51 65 29 58 58 1 1 1 1 1 1 10471 13490 876 13351 20702 26996 26996 1 LYGPSSVSFADDFVR Unmodified 1658.794 0.79403655 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 6 0 1 69.703 69.703 3 0.0039207 21887 TMT1-5 59.68 48.206 61.653 56.727 49.498 44.216 49.24 60.423 58 58 51 44 51 58 1 1 1 1 1 1 6797.4 13491 1223 13352 20703 26997 26997 1 LYGPTNFAPIINHVAR Unmodified 1781.9577 0.95768826 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 9 0 1 61.329 61.329 3 5.7686E-08 16246 TMT1-8 98.676 79.577 92.38 123.67 58.432 90.063 82.149 137.3 87 123 65 87 87 131 1 1 1 1 1 1 22452 13492 2495 13353 20704 26998 26998 1 LYGSAGPPPTGEEDTAEKDEL Unmodified 2174.9855 0.98553831 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 2.33 0.471 2 1 58.114 58.114 3;4 1.5922E-36 18083 TMT1-1 165.3 158.94 421.87 704.51 454.06 493.54 563.39 691.75 399 696 481 486 583 664 6 6 6 6 6 6 178810 13493 640 13354 20705;20706;20707 26999;27000;27001;27002;27003;27004 27000 6 LYGSEAFATDFQDSAAAK Unmodified 1890.8636 0.86357268 408 P01011;P01011-2 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes no 0 0 0 0 0 5 0 1 65.957 65.957 3 8.2548E-08 20300 TMT1-4 95.197 75.122 46.571 88.886 32.399 22.115 0 38.376 44 87 36 22 0 36 1 1 1 1 0 1 15694 13494 408 13355 20708 27005 27005 1 LYHEADK Unmodified 874.41848 0.418482 294 O75663 TIPRL TIP41-like protein yes yes 0 0 0 0 0 4 0 1 32.91 32.91 3 0.0040862 7504 TMT1-3 62.717 30.957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13495 294 13356 20709 27006 27006 1 LYHELVGLAK Unmodified 1141.6495 0.64954457 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 7.5 0.5 1 1 56.552 56.552 3 0.0032026 16058 TMT1-6 77.662 58.882 328.54 665.62 483.66 474.88 531.98 748.08 312 654 505 470 554 716 3 3 3 3 3 3 87207 13496 2309 13357 20710;20711 27007;27008;27009 27007 3 LYHEQLLANLSAIQEQWETK Unmodified 2413.2278 0.22777469 2039 Q6PJW8;Q6PJW8-2 CNST Consortin yes no 0 0 0 0 0 8 0 1 75.487 75.487 4 3.3401E-06 23577 TMT1-7 78.088 65.239 131.44 174.21 123.71 155.29 184.88 165.28 124 174 131 152 189 160 2 2 2 2 2 2 17912 13497 2039 13358 20712 27010;27011 27010 2 LYHNEVEIEK Unmodified 1272.635 0.63501672 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 4 0 1 44.327 44.327 3 0.0034296 12085 TMT1-3 77.062 61.523 53.753 111.2 68.735 74.251 76.61 106.55 51 109 73 73 80 102 1 1 1 1 1 1 14331 13498 1790 13359 20713 27012 27012 1 LYHSCADPTGCGTGPDAR Unmodified 1933.8047 0.80469437 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 4 0 1 35.492 35.492 3 6.9809E-25 8534 TMT1-3 123.4 104.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13499 2866 13360 20714 27013 27013 1 LYHSEAFTVNFGDTEEAKK Unmodified 2185.0328 0.032763277 407 P01009;P01009-2;P01009-3 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 1 6 0 1 54.109 54.109 4 1.9765E-10 15818 TMT1-5 102.57 89.725 84.436 139.17 118 141.57 118.54 105.35 80 138 123 138 123 102 1 1 1 1 1 1 24863 13500 407 13361 20715 27014 27014 1 LYIDSYEKDVAK Unmodified 1442.7293 0.72931103 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 1 6 0 1 54.747 54.747 3 8.4758E-06 16024 TMT1-5 113.77 83.224 225.46 349.21 223.11 179.38 273.87 283.2 213 346 234 181 279 273 1 1 1 1 1 1 20423 13501 1043 13362 20716 27015 27015 1 LYIEFVK Unmodified 910.51641 0.51640513 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 8 0 1 67.774 67.774 2 0.007763 20568 TMT1-7 123.96 61.116 122.39 222.06 161.68 113.95 170.31 188.09 116 219 167 116 174 181 1 1 1 1 1 1 34899 13502 1759 13363 20717 27016 27016 1 LYIGLAGLATDVQTVAQR Unmodified 1888.0418 0.04181182 1191 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 0 8.5 0.5 1 1 80.063 80.063 3 2.3865E-36 23525 TMT1-8 168.05 132.16 107.68 151.66 167.73 98.805 142.72 159.03 102 152 168 102 146 153 3 3 3 3 3 3 43552 13503 1191 13364 20718;20719 27017;27018;27019 27018 3 LYKDDQLLDDGK Unmodified 1421.7038 0.70382456 1846 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 1 5 0 2 53.47 53.47 3;4 0.00049549 15405 TMT1-4 86.814 60.378 292.22 587.43 342.61 301.74 421.51 480.46 277 576 363 302 432 462 2 2 2 2 2 2 61932 13504 1846 13365 20720;20721 27020;27021 27021 2 LYKEELEQTYHAK Unmodified 1650.8253 0.82533668 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 6 0 1 47.504 47.504 3 0.0069842 13143 TMT1-5 64.65 40.808 153.91 203.8 108.71 85.256 178.41 203.85 145 203 116 87 181 196 1 1 1 1 1 1 12812 13505 816 13366 20722 27022 27022 1 LYLADPMK Unmodified 949.49429 0.49428948 1182 P49458;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 0 7 0 1 60.909 60.909 2 0.011515 17836 TMT1-6 97.798 49.515 176.37 339.3 186.66 142.07 281.14 212.64 167 333 198 145 282 207 1 1 1 1 1 1 41157 13506 1182 13367 20723 27023 27023 1 LYLEDDDPVQAEAYINR Unmodified 2022.9535 0.95345032 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 3 0 1 67.597 67.597 3 1.7846E-07 22171 TMT1-2 96.489 88.201 23.173 44.671 34.865 28.965 34.749 45.912 22 44 36 29 36 44 1 1 1 1 1 1 8744.8 13507 2532 13368 20724 27024 27024 1 LYLFGLESAEQAHEWVK Unmodified 2019.0102 0.010177341 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 74.399 74.399 4 0.015543 23106 TMT1-6 43.024 17.158 30.514 51.237 57.971 34.944 50.472 36.936 29 51 58 36 51 36 1 1 1 1 1 1 4670.4 13508 2440 13369 20725 27025 27025 1 LYLNSNKLDFDGLPSGIGK Unmodified 2050.0735 0.073505879 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 1 9 0 1 69.75 69.75 4 8.2508E-08 19593 TMT1-8 74.519 49.981 69.177 63.802 41.465 44.139 78.801 83.031 65 65 44 44 80 80 1 1 1 1 1 1 5236.4 13509 1666 13370 20726 27026 27026 1 LYLPGLHQALR Unmodified 1279.7401 0.74009091 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 9 0 1 55.176 55.176 3 5.4371E-07 13793 TMT1-8 120.31 80.643 46.437 88.513 55.251 44.006 42.177 53.162 44 87 58 44 44 51 1 1 1 1 1 1 11307 13510 1633 13371 20727 27027 27027 1 LYLQELITITQK Unmodified 1461.8443 0.84428121 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 9 0 1 82.42 82.42 3 0.00066243 24542 TMT1-8 75.479 41.603 30.818 35.895 19.811 37.791 19.978 37.806 29 36 22 36 22 36 1 1 1 1 1 1 4108.4 13511 1994 13372 20728 27028 27028 1 LYLVDLAGSEK Unmodified 1206.6496 0.64960415 998 P33176;O60282;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 7 0 1 68.8 68.8 3 0.0010871 20919 TMT1-6 85.813 57.414 61.543 80.166 48.114 43.732 79.369 67.025 58 80 51 44 80 65 1 1 1 1 1 1 9557.3 13512 998 13373 20729 27029 27029 1 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR Unmodified 3645.8442 0.84424499 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 88.518 88.518 4 1.1447E-10 26855 TMT1-8 68.516 58.546 30.683 44.153 35.517 14.173 5.6148 30.754 29 44 36 15 7 29 1 1 1 1 1 1 11634 13513 1792 13374 20730 27030 27030 1 LYNLFLK Unmodified 909.53239 0.53238955 2419 Q96I99;Q96I99-2 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 9 0 1 72.716 72.716 2 0.0084921 20759 TMT1-8 129.29 58.257 190.9 375.77 237.95 202.98 250.89 311.57 181 369 250 203 259 299 1 1 1 1 1 1 33693 13514 2419 13375 20731 27031 27031 1 LYNLLLLR Unmodified 1016.6383 0.6382516 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 9 0 1 75.456 75.456 2 0.0093847 21807 TMT1-8 91.906 54.886 38.168 51.121 34.072 36.384 49.6 60.413 36 51 36 36 51 58 1 1 1 1 1 1 3104.8 13515 3012 13376 20732 27032 27032 1 LYNNHEIR Unmodified 1057.5305 0.53049207 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 4 0 1 30.953 30.953 3 0.0072373 6707 TMT1-3 78.149 33.382 92.52 92.758 60.976 74.571 84.218 97.801 87 94 65 73 87 94 1 1 1 1 1 1 13457 13516 226;227 13377 20733 27033 27033 1 LYNNITFEELGALLEIPAAK Unmodified 2218.1885 0.18853564 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 7.33 0.471 2 1 96.686 96.686 3;4 8.104E-15 31574 TMT1-7 116.6 109.07 46.589 70.588 44.918 32.912 61.628 80.323 44 70 47 33 63 77 4 4 4 3 4 4 14358 13517 2532 13378 20734;20735;20736 27034;27035;27036;27037 27037 4 LYNTCAVFGPDGTLLAK Unmodified 1838.9237 0.92367052 2714 Q9NQR4 NIT2 Omega-amidase NIT2 yes yes 0 0 0 0 0 8 0 1 72.063 72.063 3 2.7344E-07 22316 TMT1-7 92.264 74.347 61.403 79.776 71.992 42.608 63.422 76.008 58 80 73 44 65 73 1 1 1 1 1 1 13852 13518 2714 13379 20737 27038 27038 1 LYNTHLNK Unmodified 1001.5294 0.52942943 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 MYO5A Unconventional myosin-Va yes no 0 0 0 0 0 8 0 1 39.028 39.028 3 0.01372 9233 TMT1-7 68.735 47.833 115.3 151.45 149.68 114.95 155.06 204.51 109 152 152 116 160 196 1 1 1 1 1 1 8693.9 13519 3016 13380 20738 27039 27039 1 LYPAAVDTIVAIMAEGK Unmodified 1760.9383 0.93825795 2909 Q9ULC4-2;Q9ULC4;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 0 8 0 1 95.542 95.542 3 3.894E-21 31213 TMT1-7 142.1 104.01 23.359 13.887 29.8 14.08 28.654 30.096 22 15 29 15 29 29 1 1 1 1 1 1 8876.6 13520 2909 13381 20739 27040 27040 1 LYPPLANIQEVSINIAIK Unmodified 1995.1405 0.14046323 859 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 0 9 0 1 83.834 83.834 3 2.3655E-18 25053 TMT1-8 112.5 93.963 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13521 859 13382 20740 27041 27041 1 LYPWGIVEVENQAHCDFVK Unmodified 2303.1045 0.10448843 2486 Q99719 SEPT5 Septin-5 yes yes 0 0 0 0 0 7 0 2 72.316 72.316 3 2.9123E-08 22396 TMT1-6 72.187 63.024 38.16 43.544 41.795 67.535 54.177 98.658 36 44 44 65 58 94 1 1 1 1 1 1 17999 13522 2486 13383 20741;20742 27042;27043 27043 2 LYPWGVVEVENPEHNDFLK Unmodified 2284.1164 0.11643333 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 6 0 2 72.785 72.785 3;4 1.7452E-35 23153 TMT1-5 158.17 135 200.02 276.28 233.38 195.66 247.9 256.23 189 276 240 196 254 247 3 3 3 3 3 3 89040 13523 1812 13384 20743;20744 27044;27045;27046 27045 3 LYQAGEGR Unmodified 892.44028 0.44028008 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 4 0 1 33.975 33.975 2 7.7901E-08 7929 TMT1-3 143.89 86.075 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13524 804 13385 20745 27047 27047 1 LYQHAVEYFLHAIK Unmodified 1730.9144 0.91442646 2923 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 0 0 9 0 1 72.653 72.653 4 0.00012734 20669 TMT1-8 71.176 43.766 153.77 157 171.97 136.97 192.03 194.93 145 160 174 138 196 188 2 2 2 2 2 2 5631.2 13525 2923 13386 20746 27048;27049 27048 2 LYQHSQQPGK Unmodified 1184.5938 0.5938206 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 31.305 31.305 3 0.00014781 6315 TMT1-6 107.55 67.638 401.73 473.27 428.75 379.52 371.66 670.57 379 477 440 377 394 639 4 4 4 4 4 4 60798 13526 1797 13387 20747;20748 27050;27051;27052;27053 27053 4 LYQPEYQEVSTEEQREEISGK Unmodified 2541.1871 0.18709167 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 1 3 0 1 52.922 52.922 4 7.1095E-18 16391 TMT1-2 117.48 98.597 84.639 132.18 89.784 80.072 107.26 89.681 80 131 94 80 109 87 1 1 1 1 1 1 26976 13527 3017 13388 20749 27054 27054 1 LYQQHGAGLFDVTR Unmodified 1603.8107 0.81068967 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 7 0 1 51.685 51.685 3 5.2686E-17 14229 TMT1-6 146.34 113.25 214.97 323.63 204.8 164.59 304.8 285.52 203 321 215 167 308 276 1 1 1 1 1 1 126530 13528 105 13389 20750 27055 27055 1 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Unmodified 3345.4918 0.49180624 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 0 5 0 1 76.792 76.792 4 0.010295 24464 TMT1-4 28.946 22.786 30.695 51.741 27.143 21.911 27.487 53.582 29 51 29 22 29 51 1 1 1 1 1 1 29410 13529 641 13390 20751 27056 27056 1 LYQSLEFPSSCLLHPITSIEYQWIQGR Unmodified 3264.6278 0.62776986 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 8.5 0.5 1 1 85.496 85.496 4 0.00038296 25707 TMT1-8 46.399 33.721 23.026 66.926 40.765 60.861 63.63 76.002 22 65 44 59 66 73 2 2 2 2 2 2 14755 13530 2066 13391 20752;20753 27057;27058 27058 2 LYQTDPSGTYHAWK Unmodified 1665.7787 0.77872084 108 O14818;O14818-2;Q8TAA3-2;Q8TAA3-5;Q8TAA3 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 0 0 0 0 0 7 0 2 51.296 51.296 3;4 1.0495E-28 13996 TMT1-6 191.89 147.6 306.95 491.69 472.88 249.26 416.22 430.51 291 489 476 261 423 415 2 2 2 2 2 2 50334 13531 108 13392 20754;20755 27059;27060 27059 2 LYQVEYAFK Unmodified 1159.5914 0.59136099 1361 P60900 PSMA6 Proteasome subunit alpha type-6 yes yes 0 0 0 0 0 7.5 0.5 2 2 64.849 64.849 2;3 8.9431E-06 19372 TMT1-6 159.11 114.98 323.2 447.67 303.68 291.53 390.44 515.46 305 446 319 290 403 494 3 3 3 3 3 3 91279 13532 1361 13393 20756;20757;20758;20759 27061;27062;27063;27064 27061 4 LYQVEYAMEAIGHAGTCLGILANDGVLLAAER Unmodified 3417.7061 0.70609653 893 P25789 PSMA4 Proteasome subunit alpha type-4 yes yes 0 0 0 0 0 8 0 1 98.612 98.612 4 0.0055675 32322 TMT1-7 37.544 32.538 0 11.704 0 11.9 6.5255 7.2758 0 11 0 11 7 7 0 1 0 1 1 1 2181.6 13533 893 13394 20760 27065 27065 1 LYSEDELPAEFK Unmodified 1439.682 0.68202649 3050 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 0 4 0 1 64.221 64.221 3 0.0027266 19878 TMT1-3 53.252 34.795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13534 3050 13395 20761 27066 27066 1 LYSEFLGK Unmodified 955.50148 0.50148335 591 P09488;P09488-2 GSTM1 Glutathione S-transferase Mu 1 no no 0 0 0 0 0 7 0 1 64.425 64.425 2 0.011515 19213 TMT1-6 97.798 57.695 146.39 180.53 130.43 164.25 151.86 262.17 138 181 138 160 161 250 1 1 1 1 1 1 15116 13535 591 13396 20762 27067 27067 1 LYSESLAR Unmodified 937.4869 0.48689592 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 4.5 0.5 1 1 43.222 43.222 2 2.233E-18 11309 TMT1-4 192.56 44.018 1022 1669.1 1564 1099.3 1332 1593 969 1658 1588 1114 1374 1530 2 2 2 2 2 2 215670 13536 1217;972 13397 20763;20764 27068;27069 27069 2 LYSILGTTLK Unmodified 1107.654 0.65396125 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 9 0 1 71.596 71.596 2 1.2744E-07 20267 TMT1-8 159.79 98.82 208.02 229.65 189.44 175.18 197.31 203.31 196 232 196 174 203 196 2 2 2 2 2 2 50630 13537 250 13398 20765 27070;27071 27070 2 LYSILGTTLKDEGK Unmodified 1536.8399 0.83992412 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 1 6.5 3.2 1 2 1 66.576 66.576 3;4 4.0683E-22 20077 TMT1-7 172.1 103.27 2426.7 3259.8 2896.3 2310.8 2781.1 2824.4 2293 3263 2964 2320 2853 2724 6 6 6 6 6 6 731760 13538 250 13399 20766;20767;20768;20769 27072;27073;27074;27075;27076;27077 27074 6 LYSLALHPNAFK Unmodified 1372.7503 0.75032125 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 60.028 60.028 3 0.00066472 15718 TMT1-8 75.416 49.373 84.513 139.38 104.99 93.361 166.05 126.38 80 138 109 94 167 123 1 1 1 1 1 1 9869.7 13539 1507 13400 20770 27078 27078 1 LYSLDPEQK Unmodified 1091.5499 0.5498901 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 5 0 1 55.382 55.382 2 0.009071 16125 TMT1-4 60.563 16.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13540 51 13401 20771 27079 27079 1 LYSLSVLYK Unmodified 1084.6168 0.61684746 149 O15498-2;O15498 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 0 9 0 1 69.363 69.363 3 0.002391 19427 TMT1-8 76.827 15.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13541 149 13402 20772 27080 27080 1 LYSPSQIGAFVLMK Unmodified 1552.8323 0.83233632 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 9 0 2 79.908 79.908 2;3 1.1503E-06 23512 TMT1-8 107.85 86.945 99.28 153.83 135.49 92.016 140.95 188.92 94 153 138 94 145 181 2 2 2 2 2 2 30133 13542 1058 13403 20773;20774 27081;27082 27081 2 LYSQFLGK Unmodified 954.51747 0.51746776 927 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 0 9 0 1 61.917 61.917 2 0.007227 16457 TMT1-8 114.89 67.827 108.26 130.61 88.367 111.32 135.38 112.33 102 131 94 109 138 109 1 1 1 1 1 1 11694 13543 927 13404 20775 27083 27083 1 LYSTWIGGSILASLDTFK Unmodified 1971.0353 0.035329459 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 0 9 0 2 96.109 96.109 3;4 4.9796E-11 29693 TMT1-8 105.39 68.233 100.9 116.42 75.47 105.02 104.48 167.58 95 117 81 102 110 160 3 3 3 3 3 3 16850 13544 1381;1087 13405 20776;20777 27084;27085;27086 27086 3 LYSTWIGGSILASLDTFKK Unmodified 2099.1303 0.13029248 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 1 9 0 2 87.13 87.13 3;4 2.5913E-20 26308 TMT1-8 124.84 102.19 95.909 171.98 145.74 104.9 121.01 112.74 91 170 149 106 124 109 2 2 2 2 2 2 42173 13545 1381;1087 13406 20778;20779 27087;27088 27087 2 LYSVSYLLK Unmodified 1084.6168 0.61684746 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 3.56 1 1 1 70.667 70.667 2 9.2834E-17 19734 TMT1-8 198.07 106.17 9168.1 11021 11701 7723.5 9738.9 15752 8661 11123 11786 7872 10167 15037 5 5 5 5 5 5 1332800 13546 831 13407 20780;20781;20782 27089;27090;27091;27092;27093;27094 27092 6 LYSVSYLLK Phospho (STY) 1164.5832 0.58317787 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 1 0 9 0 1 85.043 85.043 2 0.040811 25491 TMT1-8 41.984 11.999 46.832 43.203 27.233 29.548 27.942 30.117 44 44 29 29 29 29 1 1 1 1 1 1 5728 13547 831 13407 20783 27095 27095 25 1 LYSVSYLLKDKGEYTLVVK Unmodified 2217.2297 0.22967217 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 2 9 0 1 70.684 70.684 4 8.6457E-05 19963 TMT1-8 63.691 49.96 61.403 79.776 71.98 42.875 49.301 60.421 58 80 73 44 51 58 1 1 1 1 1 1 5356.5 13548 831 13408 20784 27096 27096 1 LYSVVFQEICNR Unmodified 1526.7551 0.75514863 1624 Q08623;Q08623-4;Q08623-2;Q08623-3 HDHD1 Pseudouridine-5'-phosphatase yes no 0 0 0 0 0 8 0 1 72.318 72.318 3 0.00030508 22382 TMT1-7 89.356 81.252 38.035 58.307 50.249 27.895 42.918 53.141 36 58 51 29 44 51 1 1 1 1 1 1 6616.6 13549 1624 13409 20785 27097 27097 1 LYTDFDEIRQEIENETER Unmodified 2299.0604 0.06043459 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 3.5 0.5 1 1 76.917 76.917 3 9.1489E-25 25735 TMT1-2 148.46 132.16 61.711 34.223 58.849 34.631 64.286 91.974 58 37 58 36 66 88 2 2 2 2 2 2 11913 13550 68 13410 20786;20787 27098;27099;27100 27098 3 LYTLVLTDPDAPSR Unmodified 1559.8195 0.81952302 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 6.5 0.5 1 1 69.44 69.44 2 3.7992E-34 21855 TMT1-5 200.76 168.77 176.96 248.13 164.23 185.3 203.92 210.58 167 247 174 182 210 203 3 3 3 3 3 3 63116 13551 954 13411 20788;20789 27101;27102;27103 27102 3 LYTLVLTDPDAPSRK Unmodified 1687.9145 0.91448604 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 1 8 0 2 61.184 61.184 3;4 1.2148E-05 17968 TMT1-7 96.673 81.642 177.27 201.49 152.56 170.18 173.18 242.37 167 203 160 167 181 232 2 2 2 2 2 2 37031 13552 954 13412 20790;20791 27104;27105 27104 2 LYTVEYLSNMVGGR Unmodified 1600.7919 0.79192806 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 8.5 0.5 1 1 74.416 74.416 3 0.00035006 23282 TMT1-7 59.248 36.369 37.931 81.764 47.776 51.838 56.218 60.224 36 80 51 51 58 58 1 1 1 1 1 1 6377.1 13553 1739 13413 20792;20793 27106;27107 27106 2 LYTWVEWVK Unmodified 1222.6386 0.63864553 2829 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 79.277 79.277 2 0.0081498 23276 TMT1-8 95.358 45.545 46.649 42.694 58.403 34.938 49.41 67.88 44 44 58 36 51 65 1 1 1 1 1 1 9155.5 13554 2829 13414 20794 27108 27108 1 LYVHEAVK Unmodified 957.52837 0.5283668 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 39.67 39.67 3 0.003025 10004 TMT1-5 92.439 55.746 1781.5 2261.6 1813.6 1508.6 2198.1 1835.8 1681 2267 1872 1517 2228 1781 3 3 3 3 3 3 75449 13555 1833 13415 20795 27109;27110;27111 27109 3 MAAGELEGGK Acetyl (Protein N-term) 1003.4644 0.46444592 2186 Q8N668;Q8N668-2 COMMD1 COMM domain-containing protein 1 yes no 0 1 0 0 0 2 0 1 57.323 57.323 2 0.0027612 17808 TMT1-1 65.038 24.051 91.816 153.4 127.92 93.28 97.707 136.86 87 152 131 94 102 131 1 1 1 1 1 1 21177 13556 2186 13416 20796 27112 27112 1 MADGVANVEHILK Unmodified 1395.718 0.71803484 2613 Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 0 5.5 0.5 1 1 58.131 58.131 3 0.0011937 17275 TMT1-4 55.98 33.101 115.57 160.82 97.328 62.947 122.15 105.25 109 160 102 65 123 102 1 1 1 1 1 1 11651 13557 2613 13417 20797;20798 27113;27114 27113 2 MAFLAGPR Oxidation (M) 877.44801 0.44800799 2180 Q8N4S7-3;Q8N4S7-2;Q8N4S7 PAQR4 Progestin and adipoQ receptor family member 4 yes no 0 0 1 0 0 9 0 1 101.69 101.69 2 0.022666 31668 TMT1-8 74.517 41.001 0 0 0 0 7.0727 7.2602 0 0 0 0 7 7 0 0 0 0 1 1 4175 13558 2180 13418 20799 27115 27115 282 1 MAFPCFDEPAFK Unmodified 1458.6312 0.63119367 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 72.179 72.179 3 0.0012504 22250 TMT1-6 77.062 66.118 84.708 116.18 91.795 56.467 77.428 106.52 80 116 94 58 80 102 1 1 1 1 1 1 14002 13559 2791 13419 20800 27116 27116 1 MAGCSLSFR Unmodified 1027.4579 0.45792075 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P50225-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 8 0 1 47.478 47.478 2 0.0073023 12596 TMT1-7 93.143 43.183 185.06 178.02 124.55 125.13 100.38 229.52 174 181 131 123 109 218 1 1 1 1 1 1 18523 13560 617;1214 13420 20801 27117 27117 1 MAGTAFDFENMK Unmodified 1360.5792 0.5791581 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 7 0 1 65.513 65.513 3 1.628E-07 19648 TMT1-6 103.08 98.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13561 972 13421 20802 27118 27118 1 MAGTAFDFENMKR Unmodified 1516.6803 0.68026913 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 8 0 1 56.769 56.769 3 0.00048395 16280 TMT1-7 63.292 43.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13562 972 13422 20803 27119 27119 1 MAIESAGFK Unmodified 952.4688 0.46880301 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7 0 1 53.122 53.122 2 0.00040211 14725 TMT1-6 138.78 90.224 257.72 352.79 388.3 227.51 388.08 365.22 244 354 389 236 393 353 1 1 1 1 1 1 46862 13563 536 13423 20804 27120 27120 1 MAKPEEVLVVENDQGEVVR Unmodified 2140.0834 0.083418639 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 1 4 0 1 55.954 55.954 3 5.1461E-10 16621 TMT1-3 102.07 80.469 61.32 79.545 86.168 64.756 61.341 106.98 58 80 87 65 65 102 1 1 1 1 1 1 14174 13564 121 13424 20805 27121 27121 1 MALDIEIATYR Unmodified 1294.6591 0.65912298 575 P08670;P41219-2;P41219 VIM;PRPH Vimentin;Peripherin yes no 0 0 0 0 0 5.5 0.5 1 1 67.02 67.02 2;3 9.3063E-05 20621 TMT1-4 103.31 38.873 200.34 262.08 190.04 118.94 221.87 233.52 189 262 196 123 225 225 3 3 3 3 3 3 35904 13565 575 13425 20806;20807 27122;27123;27124 27122 3 MALELLTQEFGIPIER Unmodified 1858.9863 0.98627078 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7.5 0.5 1 1 92.884 92.884 3 2.3511E-07 30168 TMT1-6 102.78 78.081 61.859 41.109 28.203 53.277 41.75 53.175 58 43 29 51 44 51 2 2 1 2 2 2 13818 13566 1184 13426 20808;20809 27125;27126 27125 2 MALIGLGVSHPVLK Unmodified 1433.8428 0.84284142 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 9 0 1 62.705 62.705 3 2.7586E-05 16765 TMT1-8 90.412 68.214 107.62 198.97 138.52 132.16 147.21 166.36 102 196 145 131 152 160 1 1 1 1 1 1 20011 13567 851 13427 20810 27127 27127 1 MALLATVLGR Unmodified 1043.6161 0.61613595 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 9 0 1 75.177 75.177 2 0.0091958 21705 TMT1-8 69.825 39.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13568 917 13428 20811 27128 27128 1 MALLMAEMSR Unmodified 1151.5501 0.55010658 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 9 0 1 69.094 69.094 2 2.3543E-08 19357 TMT1-8 163.32 120.98 330.66 456.73 304.43 285.92 279.61 521.82 312 455 320 283 297 497 2 2 2 2 2 2 91770 13569 776 13429 20812 27129;27130 27130 2 MALPELVR Unmodified 927.52117 0.52117293 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 59.067 59.067 2 0.023484 17073 TMT1-6 86.472 51.027 61.115 102.72 101.06 63.704 70.059 98.205 58 102 102 65 73 94 1 1 1 1 1 1 14023 13570 1122 13430 20813 27131 27131 1 MALVLEALPQIAAK Unmodified 1466.8531 0.85307176 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 9 0 1 84.506 84.506 3 4.1134E-06 25325 TMT1-8 96.64 78.045 92.113 130.48 97.447 79.507 113 136.42 87 130 101 80 116 131 2 2 2 2 2 2 13538 13571 1767 13431 20814 27132;27133 27133 2 MAPYQGPDAVPGALDYK Oxidation (M) 1807.8451 0.84508585 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 0 5 0 1 57.863 57.863 3 0.00041803 17049 TMT1-4 75.463 55.081 68.687 141.23 58.175 74.871 77.131 90.541 65 138 65 73 80 87 1 1 1 1 1 1 14731 13572 195 13432 20815 27134 27134 23 1 MAPYQGPDAVPGALDYK Unmodified 1791.8502 0.85017123 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 6 0 1 62.295 62.295 2 6.2783E-13 18995 TMT1-5 116.98 89.119 46.832 43.203 27.239 29.42 34.728 45.913 44 44 29 29 36 44 1 1 1 1 1 1 10424 13573 195 13432 20816 27135 27135 1 MAPYTGPDSVPGALDYMSFSTALYGESDL Unmodified 3054.3515 0.35145616 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 6 0.816 1 1 1 100.41 100.41 3;4 0.0070152 33439 TMT1-5 38.386 32.023 20.118 22.62 29.666 20.162 25.745 35.245 19 23 29 19 26 34 2 3 2 2 2 4 18725 13574 672 13433 20817;20818;20819 27136;27137;27138;27139 27138 4 MAQALEELR Unmodified 1059.5383 0.53827956 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 4.5 0.5 1 1 56.559 56.559 2 0.011644 16512 TMT1-4 86.67 43.801 123.76 198 131.56 117.85 116.42 229.07 117 196 138 117 124 218 2 2 2 2 2 2 28215 13575 1577 13434 20820;20821 27140;27141 27141 2 MAQEVLTHLK Unmodified 1168.6274 0.62742892 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 1 54.938 54.938 3 0.0010796 15519 TMT1-6 90.685 74.461 160.67 278.89 171.89 143.94 228.58 248.25 152 275 181 145 233 239 2 2 2 2 2 2 16975 13576 121 13435 20822 27142;27143 27143 2 MAQFDAK Unmodified 809.37417 0.37417435 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 6 0 1 45.368 45.368 2 0.021437 12305 TMT1-5 96.492 51.18 349.1 530.69 388.51 264.24 468.24 510.04 330 527 401 271 476 491 1 1 1 1 1 1 31240 13577 904 13436 20823 27144 27144 1 MASGLEFK Unmodified 881.43169 0.43168922 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7 0 1 53.818 53.818 2 7.7685E-05 15031 TMT1-6 127.56 55.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13578 876 13437 20824 27145 27145 1 MATEVAADALGEEWK Unmodified 1619.7501 0.75012283 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 0 4.67 0.471 1 2 69.659 69.659 2;3 3.1111E-15 22018 TMT1-3 137.58 120.44 261.72 491.98 319.63 269.46 292.73 405.25 248 484 335 269 305 388 3 3 3 3 3 3 68523 13579 1442 13438 20825;20826;20827 27146;27147;27148 27146 3 MATLHCQESEGHPR Unmodified 1651.7195 0.71950818 2564 Q9BX67-2;Q9BX67 JAM3 Junctional adhesion molecule C yes no 0 0 0 0 0 4 0 1 26.715 26.715 4 0.0084861 5077 TMT1-3 53.001 38.315 15.845 14.393 29.814 13.921 37.037 29.857 15 15 29 15 37 29 1 1 1 1 1 1 723.06 13580 2564 13439 20828 27149 27149 1 MATNAAAQNAIK Oxidation (M) 1218.6027 0.60267073 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6.83 0.373 1 5 36.196 36.196 3 4.9761E-07 8539 TMT1-5 95.417 61.542 108.15 114.11 121.17 101.48 147.85 188.73 102 116 123 102 152 181 1 1 1 1 1 1 26037 13581 3010 13440 20829;20830;20831;20832;20833;20834 27150;27151;27152;27153;27154;27155 27150 333 6 MATNAAAQNAIK Unmodified 1202.6078 0.60775611 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7 0 1 41.827 41.827 3 2.5029E-09 10359 TMT1-6 146.36 76.256 639.7 863.76 678.02 619 679.74 943.2 604 863 703 615 708 903 2 2 2 2 2 2 281280 13582 3010 13440 20835 27156;27157 27157 2 MATNAAAQNAIKK Unmodified 1330.7027 0.70271913 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8.33 0.471 2 1 39.982 39.982 3;4 6.274E-12 9574 TMT1-7 150.06 106.38 873.15 994.52 825.49 506.49 615.78 1280.8 823 1003 843 519 653 1218 3 3 3 3 3 3 78883 13583 3010 13441 20836;20837;20838 27158;27159;27160 27158 3 MATQASTLYSNNITK Unmodified 1641.8032 0.80322103 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 52.321 52.321 3 7.2668E-15 14517 TMT1-7 131.4 102.76 153.84 179.86 140.82 101 111.5 151.39 145 181 145 102 116 145 1 1 1 1 1 1 10282 13584 1702 13442 20839;20840 27161;27162 27162 2 MAVLALLAK Unmodified 928.57796 0.57795953 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 77.266 77.266 2 0.00025631 22508 TMT1-8 135.87 105.13 37.909 105.45 31.483 21.357 43.218 53.133 36 102 36 22 44 51 1 1 1 1 1 1 4216.8 13585 1507 13443 20841 27163 27163 1 MAVLNEQVK Unmodified 1030.5481 0.54811597 1175 P49321-2;P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 0 6 0 1 50.523 50.523 2 0.0032402 14441 TMT1-5 102.07 54.88 61.47 87.516 54.245 66.221 84.602 97.79 58 87 58 65 87 94 1 1 1 1 1 1 16434 13586 1175 13444 20842 27164 27164 1 MAVTFIGNSTAIQELFK Oxidation (M) 1884.9655 0.96553533 537 P07437 TUBB Tubulin beta chain yes yes 0 0 1 0 0 8.75 0.433 1 3 81.472 81.472 3 4.304E-19 23118 TMT1-8 124.25 92.725 477.58 517.87 446.67 370.05 469.49 636.86 450 524 459 371 486 610 7 7 7 7 7 7 83776 13587 537 13445 20843;20844;20845;20846 27165;27166;27167;27168;27169;27170;27171 27167 95 7 MAVTFIGNSTAIQELFK Unmodified 1868.9706 0.97062071 537 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 0 9 0 2 84.839 84.839 3;4 2.3375E-26 25490 TMT1-8 136.34 108.37 747.21 968.35 734.86 647.49 670.04 1035.2 705 969 763 644 703 989 4 4 4 4 4 4 287800 13588 537 13445 20847;20848 27172;27173;27174;27175 27173 4 MAVTFIGNSTAIQELFKR Unmodified 2025.0717 0.07173174 537 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 1 9 0 1 75.885 75.885 3 3.2931E-14 21976 TMT1-8 119.55 80.94 46.693 65.481 31.741 68.386 40.799 60.664 44 65 36 65 44 58 1 1 1 1 1 1 9478.5 13589 537 13446 20849 27176 27176 1 MAVWGNK Unmodified 804.39524 0.39524414 591;927 P09488;P09488-2;P28161 GSTM1;GSTM2 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 2 no no 0 0 0 0 0 9 0 1 50.541 50.541 2 0.032299 11997 TMT1-8 88.201 40.353 154.1 157.91 115.85 156.72 249.83 191.15 145 160 123 154 252 186 1 1 1 1 1 1 10647 13590 591;927 13447 20850 27177 27177 1 MAYFVSSLNK Unmodified 1158.5743 0.57433072 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 9 0 1 64.91 64.91 3 0.013713 17662 TMT1-8 54.982 25.924 61.389 72.182 80.783 25.507 73.135 59.741 58 73 80 29 73 58 1 1 1 1 1 1 4138.9 13591 2121 13448 20851 27178 27178 1 MCALYASLALLSGLSQEPH Unmodified 2060.0071 0.0070825729 1344 P57764 GSDMD Gasdermin-D yes yes 0 0 0 0 0 9 0 1 96.335 96.335 3 1.2591E-08 29739 TMT1-8 80.738 62.776 31.996 21.003 14.809 0 6.523 23.266 30 22 15 0 7 22 1 1 1 0 1 1 3898.7 13592 1344 13449 20852 27179 27179 1 MCDLVSDFDGFSER Unmodified 1676.6811 0.68105699 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 4 0 1 73.198 73.198 3 0.00014208 23369 TMT1-3 82.55 63.155 15.824 29.444 20.617 30.096 19.782 53.802 15 29 22 29 22 51 1 1 1 1 1 1 4364.2 13593 962 13450 20853 27180 27180 1 MCLFAGFQR Unmodified 1128.5209 0.52085536 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 1 64.415 64.415 2 0.0042878 17469 TMT1-8 86.866 54.724 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13594 1545 13451 20854 27181 27181 1 MCLYFGSAFATPFLVVR Unmodified 1977.9845 0.98449664 729 P15954 COX7C Cytochrome c oxidase subunit 7C, mitochondrial yes yes 0 0 0 0 0 9 0 1 90.345 90.345 3 4.2507E-05 27609 TMT1-8 69.431 53.844 39.117 58.258 48.842 59.422 56.419 44.228 37 58 51 58 58 43 2 2 2 2 2 2 5601.4 13595 729 13452 20855 27182;27183 27182 2 MDAATLTYDTLR Acetyl (N-term) 1411.6653 0.66533057 3018 Q9Y4P1-6;Q9Y4P1;Q9Y4P1-2 ATG4B Cysteine protease ATG4B yes no 1 0 0 0 0 3 0 1 73.933 73.933 2 9.3921E-06 24638 TMT1-2 72.2 54.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13596 3018 13453 20856 27184 27184 1 MDAEVPDVNIEGPDAK Unmodified 1698.7771 0.77706586 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2.5 0.5 1 1 61.195 61.195 3 5.5626E-07 19640 TMT1-2 100.41 81.335 92.202 100.51 107.92 79.148 98.906 120.83 87 102 109 80 102 116 2 2 2 2 2 2 14538 13597 1632 13454 20857;20858 27185;27186 27186 2 MDAHPPR Oxidation (M) 838.37557 0.37557133 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 1 0 0 2 0 1 17.825 17.825 3 0.0025989 3268 TMT1-1 73.039 39.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13598 506 13455 20859 27187 27187 74 1 MDAHPPR Unmodified 822.38066 0.38065671 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 4 0 1 24.688 24.688 3 0.015201 4337 TMT1-3 73.616 51.53 169.71 178.13 179.89 123.32 176.9 227.34 160 181 182 124 182 218 3 3 3 2 3 3 11088 + 13599 506 13455 20860 27188;27189;27190 27189 3 MDATANDVPSDR Unmodified 1290.551 0.55102909 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 2 0 1 38.169 38.169 2 0.004027 10243 TMT1-1 60.167 40.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13600 686 13456 20861 27191 27191 1 MDATANDVPSPYEVR Oxidation (M) 1679.7461 0.74610008 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 1 0 0 2.5 0.5 1 1 46.461 46.461 3 0.0026777 13759 TMT1-2 68.481 51.228 108 144.99 120.02 110.19 95.626 144.38 102 145 124 109 101 138 2 2 2 2 2 2 18431 13601 955 13457 20862;20863 27192;27193 27193 175 2 MDATANDVPSPYEVR Unmodified 1663.7512 0.75118546 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 3.5 0.5 1 1 52.4 52.4 3 2.7981E-23 16201 TMT1-2 178.03 147.46 363.75 551.3 433.62 388.12 480.02 580.06 344 548 449 387 495 557 5 5 5 5 5 5 172360 13602 955 13457 20864;20865 27194;27195;27196;27197;27198 27195 5 MDCQECPEGYR Unmodified 1443.5217 0.52171957 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2 0 1 37.093 37.093 2 1.3389E-23 9803 TMT1-1 201.09 192.6 115.25 175.05 138.47 164.73 100.69 167.69 109 174 145 160 109 160 2 2 2 2 2 2 33145 13603 831 13458 20866 27199;27200 27199 2 MDCQECPEGYR Oxidation (M) 1459.5166 0.5166342 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 2 0 1 35.566 35.566 2 0.0064688 9209 TMT1-1 66.19 61.296 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13604 831 13458 20867 27201 27201 160 1 MDDIFTQCR Acetyl (Protein N-term);Oxidation (M) 1242.5009 0.50090778 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 1 1 0 0 2 0 1 53.479 53.479 2 0.029222 16331 TMT1-1 52.482 33.706 23.299 37.466 19.767 37.513 34.905 29.918 22 37 22 36 36 29 1 1 1 1 1 1 3934.2 13605 1700 13459 20868 27202 27202 263 1 MDDIFTQCR Acetyl (Protein N-term) 1226.506 0.50599315 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 1 0 0 0 2.5 0.5 1 1 67.718 67.718 2 1.0082E-20 22210 TMT1-2 178.08 143.99 55.028 73.914 66.468 43.042 57.89 53.78 52 74 66 44 59 52 3 3 2 3 3 3 73830 13606 1700 13459 20869;20870 27203;27204;27205 27204 3 MDDTLFQLK Acetyl (Protein N-term) 1151.5533 0.55326092 2695 Q9HD42 CHMP1A Charged multivesicular body protein 1a yes yes 0 1 0 0 0 5 0 1 81.213 81.213 2 0.0010501 26214 TMT1-4 49.418 35.91 30.891 44.733 0 23.235 43.132 53.135 29 44 0 22 44 51 1 1 0 1 1 1 7907.4 13607 2695 13462 20871 27206 27206 1 MDEDVLTTLK Acetyl (Protein N-term) 1205.585 0.58495498 2700 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 1 0 0 0 2.5 0.5 1 1 76.102 76.102 2 7.4651E-06 25507 TMT1-2 67.563 47.233 54.266 81.949 34.433 75.844 100.63 74.946 51 81 37 73 102 73 2 3 2 3 3 3 12884 13608 2700 13463 20872;20873 27207;27208;27209 27209 3 MDELQLFR Unmodified 1050.5168 0.51681584 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 6 0 1 65.84 65.84 2 0.0049126 20430 TMT1-5 121.67 103.27 276.85 349.67 242.73 218.35 290.1 337.11 261 350 254 218 298 324 2 2 2 2 2 2 83972 13609 1311 13464 20874 27210;27211 27211 2 MDFLLGNPFSSPVGQR Acetyl (N-term) 1805.8771 0.87705468 238 O60784;O60784-2;O60784-3 TOM1 Target of Myb protein 1 yes no 1 0 0 0 0 8 0 1 98.231 98.231 2 0.0077167 32079 TMT1-7 58.511 44.051 0 15 0 0 0 0 0 15 0 0 0 0 0 1 0 0 0 0 1738.3 13610 238 13465 20875 27212 27212 1 MDFQQLADVAEK Acetyl (Protein N-term) 1435.6653 0.66533057 2174 Q8N3F0-4;Q8N3F0-2;Q8N3F0 MTURN Maturin yes no 0 1 0 0 0 3.5 0.5 1 1 82.258 82.258 2 6.5497E-08 26886 TMT1-3 72.006 31.961 61.341 103.35 62.518 91.036 75.582 114.04 58 102 66 88 80 109 3 3 2 3 3 3 11578 13611 2174 13466 20876;20877 27213;27214;27215 27215 3 MDGIVPDIAVGTK Acetyl (Protein N-term) 1356.6959 0.69590241 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 1 0 0 0 4 0 1 79.799 79.799 2 9.4232E-05 26015 TMT1-3 57.019 39.994 46.627 66.376 42.12 28.518 35.56 53.351 44 66 44 29 37 51 2 2 2 2 2 2 6008.3 13612 901 13467 20878 27216;27217 27217 2 MDGSVDFYR Unmodified 1088.4597 0.45969489 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 0 5 0 1 51.6 51.6 2 0.0031982 14636 TMT1-4 72.23 53.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13613 84 13468 20879 27218 27218 1 MDIDAPDVDVHGPDWHLK Unmodified 2058.9469 0.94692516 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 60.356 60.356 4 2.0796E-10 18054 TMT1-4 109.38 91.243 115.62 160.97 88.23 72.68 98.398 144.3 109 160 94 73 102 138 1 1 1 1 1 1 14865 13614 1632 13470 20880 27219 27219 1 MDIDAPDVEVQGPDWHLK Unmodified 2063.9622 0.96224087 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 66.27 66.27 3 2.6601E-08 20380 TMT1-4 79.511 62.432 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13615 1632 13471 20881 27220 27220 1 MDIDVPDVEVQGPDWHLK Unmodified 2091.9935 0.993541 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 2 70.501 70.501 3;4 6.2103E-25 22021 TMT1-4 124.43 106.07 68.937 86.88 62.189 57.942 92.825 82.631 65 87 65 58 94 80 1 1 1 1 1 1 11795 13616 1632 13472 20882;20883 27221;27222 27222 2 MDLADLLTQNPELFR Unmodified 1774.8924 0.89237039 113 O14933;O14933-2 UBE2L6 Ubiquitin/ISG15-conjugating enzyme E2 L6 yes no 0 0 0 0 0 6.5 0.5 1 1 87.414 87.414 2;3 1.2448E-06 28770 TMT1-5 103.23 81.358 15.773 29.303 29.29 5.63 14.64 23.034 15 29 29 7 15 22 1 1 1 1 1 1 7051.8 13617 113 13474 20884;20885 27223;27224 27223 2 MDLFSALIK Unmodified 1036.5627 0.5627034 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 9 0 2 82.442 82.442 2;3 0.00099151 24498 TMT1-8 128.38 64.897 130.46 190.74 93.32 110.94 140.34 181.48 123 189 102 109 145 174 2 2 2 2 2 2 19015 13618 2594 13475 20886;20887 27225;27226 27225 2 MDLGECLK Unmodified 964.43579 0.43578832 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 0 5 0 1 55.236 55.236 2 0.0065777 16067 TMT1-4 71.379 39.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13619 2414 13476 20888 27227 27227 1 MDNLSSEEIQQR Acetyl (Protein N-term) 1490.6671 0.66712148 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 1 0 0 0 2 0 1 52.776 52.776 2 0.0024621 15975 TMT1-1 60.434 56.733 30.774 35.772 27.351 38.726 4.4858 30.786 29 36 29 37 7 29 1 1 1 1 1 1 8378.9 13620 45 13477 20889 27228 27228 1 MDNQVLGYK Unmodified 1066.5117 0.51173046 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 6 0 1 51.191 51.191 2 0.020912 14572 TMT1-5 77.662 51.064 130.72 143.97 89.155 73.073 74.539 168.43 123 145 94 73 80 160 1 1 1 1 1 1 9279.5 13621 1623 13478 20890 27229 27229 1 MDNYADLSDTELTTLLR Acetyl (N-term) 2011.9408 0.94083673 1218 P50402 EMD Emerin yes yes 1 0 0 0 0 3 0 1 90.784 90.784 2 4.9421E-28 29751 TMT1-2 105.65 94.436 1.0666 0 1.0766 0 0 1.066 1 0 1 0 0 1 1 0 1 0 0 1 1959.5 13622 1218 13479 20891 27230;27231 27230 2 MDPLSELQDDLTLDDTSEALNQLK Acetyl (Protein N-term) 2745.2902 0.29023611 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 1 0 0 0 4 0 1 103.74 103.74 3 5.0125E-13 31697 TMT1-3 72.876 57.455 1.0526 3.1077 0.79658 2.1023 1.9241 2.0771 1 3 1 2 2 2 1 1 1 1 1 1 805.43 13623 1616 13480 20892 27232 27232 1 MDPNTIIEALR Acetyl (N-term) 1313.6649 0.66493664 352 O95373 IPO7 Importin-7 yes yes 1 0 0 0 0 4 0 1 88.423 88.423 2 0.039535 29244 TMT1-3 82.645 69.267 7.3579 30.36 0 7.651 0 0 7 29 0 7 0 0 1 1 0 1 0 0 4980.3 13624 352 13481 20893 27233 27233 1 MDSAGQDINLNSPNK Acetyl (N-term) 1644.7413 0.74134906 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3 TPD52L2 Tumor protein D54 yes no 1 0 0 0 0 3 0 1 57.586 57.586 3 4.2098E-09 18253 TMT1-2 88.075 68.752 46.589 65.192 49.436 35.902 26.588 61.069 44 65 51 36 29 58 1 1 1 1 1 1 13531 13625 172 13482 20894 27234 27234 1 MDSLATSINQFALELSK Acetyl (Protein N-term) 1908.9503 0.9502792 1159 P48595 SERPINB10 Serpin B10 yes yes 0 1 0 0 0 6.5 0.5 1 1 104.71 104.71 3 2.341E-07 34051 TMT1-5 49.049 26.574 8.4628 15.265 7.4348 9.9772 27.099 19.923 8 15 8 10 27 19 2 2 2 3 3 2 2666.1 13626 1159 13483 20895;20896 27235;27236;27237 27235 3 MDSTANEVEAVK Unmodified 1292.5918 0.59183127 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 3 0.816 1 1 1 48.815 48.815 2;3 6.5397E-09 14733 TMT1-2 150.68 114.16 354.13 419.13 358.7 305.83 327.38 474.62 334 422 369 305 342 454 3 3 3 3 3 3 79308 13627 530 13484 20897;20898;20899 27238;27239;27240 27239 3 MDSTANEVEAVK Oxidation (M) 1308.5867 0.5867459 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 1 0 0 3 0 1 42.261 42.261 3 0.018478 12194 TMT1-2 62.924 40.007 77.611 86.544 47.281 52.026 47.818 91.377 73 87 51 51 51 87 1 1 1 1 1 1 6415.1 13628 530 13484 20900 27241 27241 87 1 MDSTEPPYSQK Unmodified 1281.5547 0.55471749 1490 Q5VTE0;P68104 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 0 4 0 1 43.238 43.238 3 5.1775E-07 11588 TMT1-3 129.89 99.451 138.22 232.09 197.91 159.8 174.65 213.55 131 230 203 160 181 205 1 1 1 1 1 1 36035 13629 1490 13485 20901 27242 27242 1 MDSVTWQEGK Unmodified 1179.523 0.52302343 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 0 5 0 1 51.893 51.893 3 0.0053422 14729 TMT1-4 72.006 47.214 130.7 120.16 113.46 94.015 104.49 151.59 123 123 116 94 109 145 1 1 1 1 1 1 14635 13630 1969 13486 20902 27243 27243 1 MDVCETHLHWHTVAK Unmodified 1862.8556 0.85560773 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10;P05067-2 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 6 0 1 42.83 42.83 5 9.2528E-06 11306 TMT1-5 91.441 71.334 130.33 190.37 116.14 109.28 156.09 182.1 123 189 123 109 160 175 1 1 1 1 1 1 14012 13631 482 13487 20903 27244 27244 1 MDVNIAPLR Acetyl (N-term) 1069.559 0.559015 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 1 0 0 0 0 3 0 1 67.475 67.475 2 0.0061824 22154 TMT1-2 102.71 66.013 7.2989 53.39 22.862 7.3623 30.508 15.558 7 51 22 7 30 15 1 2 1 1 2 1 35218 13632 310 13488 20904 27245;27246 27246 2 MDVNVGDIDIEGPEGK Unmodified 1686.7771 0.77706586 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 66.5 66.5 3 1.1088E-08 20751 TMT1-3 109.04 82.677 68.734 110.06 76.719 64.9 83.6 128.73 65 109 80 65 87 123 1 1 1 1 1 1 19232 13633 1632 13489 20905 27247 27247 1 MDVVFGK Unmodified 794.39966 0.39966081 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 8 0 1 60.464 60.464 2 0.010436 17707 TMT1-7 108.09 83.751 228.11 242.52 229.72 174.35 230.2 282.32 215 246 234 176 237 271 1 1 1 1 1 1 19990 13634 2263 13490 20906 27248 27248 1 MEAAHLLPAADVLR Acetyl (Protein N-term);Oxidation (M) 1563.8079 0.80791248 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 1 1 0 0 3 0 1 61.612 61.612 2 0.00016385 19794 TMT1-2 43.544 18.158 23.3 36.39 20.51 22.292 28.276 30.107 22 36 22 22 29 29 1 1 1 1 1 1 10026 13635 2344 13491 20907 27249 27249 290 1 MEAAHLLPAADVLR Acetyl (N-term) 1547.813 0.81299786 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 1 0 0 0 0 4 0 1 69.01 69.01 2 1.3606E-25 21786 TMT1-3 103.43 51.484 76.898 132.05 128.54 109.79 89.891 98.705 73 131 131 109 94 95 2 2 2 2 2 2 93910 13636 2344 13491 20908 27250;27251 27251 2 MEALILEPSLYTVK Acetyl (N-term) 1647.8793 0.87934609 1402 P61923-5;P61923 COPZ1 Coatomer subunit zeta-1 yes no 1 0 0 0 0 5.67 0.471 1 2 95.112 95.112 2;3 8.867E-13 31347 TMT1-5 90.685 64.747 46.69 57.451 66.532 26.889 72.521 75.749 44 58 66 29 73 73 2 3 3 2 3 3 21011 13637 1402 13492 20909;20910;20911 27252;27253;27254 27253 3 MEALIPVINK Acetyl (Protein N-term) 1168.6526 0.65258104 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 1 0 0 0 6.5 0.5 1 1 86.044 86.044 2 0.00045923 27648 TMT1-6 53.166 23.828 186.16 162.92 132.72 132.11 168.38 220.12 175 167 138 131 174 211 3 3 3 3 3 3 38241 13638 68 13493 20912;20913 27255;27256;27257 27257 3 MEDLDQSPLVSSSDSPPRPQPAFK Acetyl (Protein N-term) 2669.2643 0.26429613 2708 Q9NQC3-2;Q9NQC3;Q9NQC3-4 RTN4 Reticulon-4 no no 0 1 0 0 1 4 0 1 67.172 67.172 3 1.006E-18 20993 TMT1-3 90.972 81.282 38.117 50.979 42.74 36.301 26.569 61.07 36 51 44 36 29 58 1 1 1 1 1 1 16442 13639 2708 13494 20914 27258 27258 1 MEDSVGCLETAEEVK Unmodified 1695.7332 0.73315214 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.33 0.471 2 1 58.453 58.453 2;3 1.44E-10 18492 TMT1-2 119.62 108.19 191.9 208 213.24 206.31 210.23 242.38 181 211 218 204 218 233 4 4 4 4 4 4 73549 13640 1019 13495 20915;20916;20917 27259;27260;27261;27262 27262 4 MEDSVGCLETAEEVKR Unmodified 1851.8343 0.83426316 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3 0.707 1 2 1 51.726 51.726 3;4 5.6572E-20 14824 TMT1-3 161.09 131.76 1090.8 1481.8 1348.5 1031.3 1213.3 1821.3 1031 1483 1376 1038 1265 1741 6 6 6 6 6 6 282060 13641 1019 13496 20918;20919;20920;20921 27263;27264;27265;27266;27267;27268 27267 6 MEDSVGCLETAEEVKR Oxidation (M) 1867.8292 0.82917779 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 1 3 0 1 46.04 46.04 3 0.00069451 13692 TMT1-2 68.329 44.497 53.823 87.651 77.048 89.376 59.696 121.95 51 87 80 87 65 116 1 1 1 1 1 1 15668 13642 1019 13496 20922 27269 27269 185 1 MEEADALIESLCR Unmodified 1535.696 0.69597877 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 4.5 0.5 1 1 74.616 74.616 3 0.00016132 23988 TMT1-3 89.629 74.09 15.787 60.068 34.69 37.274 58.448 45.236 15 58 37 37 59 44 1 2 2 2 2 2 7796.5 13643 2465 13497 20923;20924 27270;27271 27270 2 MEEESGAPGVPSGNGAPGPK Unmodified 1866.8418 0.84179138 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 3 0 1 48.109 48.109 3 0.0077403 14524 TMT1-2 43.326 31.41 30.495 74.931 40.986 44.28 72.784 44.827 29 73 44 44 73 44 1 1 1 1 1 1 6055.8 13644 1261 13498 20925 27272 27272 1 MEEIGILVEK Acetyl (Protein N-term) 1201.6264 0.62642587 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 1 0 0 0 3.5 0.5 1 1 85.012 85.012 2 0.0018761 28602 TMT1-2 45.161 23.654 93.679 62.702 72.123 59.005 62.946 98.408 88 66 73 59 66 94 3 3 3 3 3 3 5274.4 13645 1118 13499 20926;20927 27273;27274;27275 27273 3 MEELIWEQYTVTLQK Acetyl (Protein N-term) 1951.9601 0.96011561 2852 Q9UDY2-3;Q9UDY2-4 TJP2 Tight junction protein ZO-2 yes no 0 1 0 0 0 5 0 1 96.823 96.823 3 0.0011713 32078 TMT1-4 45.614 24.661 0 7.448 0 7.651 0 15.99 0 7 0 7 0 15 0 1 0 1 0 1 2660.7 13646 2852 13500 20928 27276 27276 1 MEESFSSK Unmodified 943.3957 0.39569765 1090 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 5 0 1 43.821 43.821 2 0.0050001 11576 TMT1-4 121.05 81.004 99.577 122.28 112.42 118.03 109.65 182.36 94 123 116 116 116 174 1 1 1 1 1 1 10953 13647 1090 13501 20929 27277 27277 1 MEEVVIAGMSGK Acetyl (N-term) 1291.6152 0.61520925 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 1 0 0 0 0 4 0 1 79.812 79.812 2 0.020346 25957 TMT1-3 50.284 32.059 46.614 90.086 24.101 61.041 48.723 52.976 44 88 30 58 51 51 2 2 2 2 2 2 4016.4 13648 1176 13502 20930 27278;27279 27279 2 MEFGTAGLR Unmodified 980.47495 0.47495102 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 6 0 1 50.527 50.527 2 0.0027487 14357 TMT1-5 74.486 42.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13649 2407 13503 20931 27280 27280 1 MEFLLGNPFSTPVGQCLEK Acetyl (Protein N-term) 2208.0595 0.059512074 2063 Q6ZVM7-5;Q6ZVM7;Q6ZVM7-3;Q6ZVM7-2 TOM1L2 TOM1-like protein 2 yes no 0 1 0 0 0 7 0 1 102.7 102.7 3 3.9394E-07 33221 TMT1-6 61.096 45.504 7.4219 10.031 6.4685 10.465 4.2042 15.87 7 10 7 10 5 15 1 1 1 1 1 1 7174.1 13650 2063 13504 20932 27281 27281 1 MEGIGLK Unmodified 746.39966 0.39966081 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 0 0 7 0 1 51.674 51.674 2 0.020011 14194 TMT1-6 97.602 52.881 624.61 1314.3 1029.5 891.34 1125.1 1286.5 594 1291 1064 891 1157 1237 1 1 1 1 1 1 91090 13651 310 13505 20933 27282 27282 1 MEGNAEESTLFCFAVR Unmodified 1859.8182 0.81821917 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5 0 1 70.057 70.057 3 0.0056817 21828 TMT1-4 53.255 33.932 30.728 44.277 27.928 14.325 21.57 22.837 29 44 29 15 22 22 1 1 1 1 1 1 4914.2 13652 1540 13506 20934 27283 27283 1 MEGPLSVFGDR Acetyl (Protein N-term) 1248.5809 0.58087266 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 1 0 0 0 3.5 0.5 1 1 80.182 80.182 2 1.998E-06 26077 TMT1-3 97.965 66.736 54.793 81.116 26.92 37.473 36.547 22.409 52 80 29 36 37 22 4 4 3 3 2 2 15448 13653 770 13507 20935;20936 27284;27285;27286;27287;27288;27289 27288 6 MEGVEEK Acetyl (Protein N-term) 862.37423 0.37423392 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 1 0 0 0 2 0 1 47.63 47.63 2 0.0012261 13958 TMT1-1 77.674 40.653 54.115 73.355 39.942 67.172 79.354 36.112 51 73 44 65 80 36 1 1 1 1 1 1 6099.9 13654 775 13508 20937 27290 27290 1 MEIGLPDEK Unmodified 1030.5005 0.50049707 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 5 0 1 57.261 57.261 2 0.0058512 16836 TMT1-4 96.331 41.926 54.14 57.233 49.537 43.509 86.709 66.816 51 58 51 44 87 65 1 1 1 1 1 1 4632.4 13655 1129 13509 20938 27291 27291 1 MELEPELLLQEAR Acetyl (Protein N-term) 1611.8178 0.81780846 2135 Q8IUI8-2 CRLF3 Cytokine receptor-like factor 3 yes yes 0 1 0 0 0 2.5 0.5 1 1 88.311 88.311 2 1.2806E-05 27894 TMT1-1 77.744 55.058 4 2 0 0 0 0 4 2 0 0 0 0 1 1 0 0 0 0 2175.9 13656 2135 13510 20939;20940 27292;27293;27294 27292 3 MELERPGGNEITR Unmodified 1500.7355 0.73547582 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 3.83 1.57 1 1 2 1 1 39.697 39.697 2;3 1.1019E-11 10147 TMT1-3 160.88 108.09 1538.9 1978.5 1525.4 1319.5 1602.6 2189.7 1452 1981 1581 1318 1662 2097 7 7 7 7 7 7 693780 13657 437 13511 20941;20942;20943;20944;20945;20946 27295;27296;27297;27298;27299;27300;27301 27299 7 MELERPGGNEITR Oxidation (M) 1516.7304 0.73039044 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 1 0 1 3.33 0.471 2 1 35.5 35.5 3 0.0034993 8754 TMT1-2 79.639 54.109 253.27 326.54 257.99 249.66 262.33 433.84 239 327 268 247 276 414 3 3 3 3 3 3 95778 13658 437 13511 20947;20948;20949 27302;27303;27304 27302 49 3 MELFLAGR Acetyl (Protein N-term) 977.50044 0.50043749 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 1 0 0 0 5 0 1 83.291 83.291 2 0.0022051 26991 TMT1-4 64.803 27.158 0 14 0 0 0 0 0 14 0 0 0 0 0 2 0 0 0 0 2733.7 13659 2098 13512 20950 27305;27306 27305 2 MELGELLYNK Acetyl (N-term) 1250.6217 0.62167484 2533 Q9BTE1;Q9BTE1-3;Q9BTE1-2 DCTN5 Dynactin subunit 5 yes no 1 0 0 0 0 4 0 1 87.421 87.421 2 0.02249 28902 TMT1-3 51.854 31.691 7.2559 14.966 30.196 5.561 15.435 0 7 15 29 7 15 0 1 1 1 1 1 0 1346.1 13660 2533 13513 20951 27307 27307 1 MELHALSTGREPR Unmodified 1495.7565 0.75654561 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 1 6 0 1 36.05 36.05 4 0.02407 8600 TMT1-5 50.563 25.771 53.927 72.83 72.119 49.968 78.533 83.039 51 73 73 51 80 80 1 1 1 1 1 1 6216.5 13661 1069 13514 20952 27308 27308 1 MELIQDTSRPPLEYVK Acetyl (N-term) 1959.9976 0.99756374 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2;P50225 SULT1A4;SULT1A3;SULT1A1 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1 no no 1 0 0 0 1 5 0 1 74.52 74.52 3 0.0036647 23648 TMT1-4 48.823 26.348 208.25 207.63 169.32 122.2 114.37 252.58 196 211 174 123 123 240 2 2 2 2 2 2 24057 13662 617;1214 13515 20953 27309;27310 27310 2 MELITILEK Acetyl (Protein N-term);Oxidation (M) 1146.6206 0.62061221 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 1 1 0 0 4.75 0.433 1 3 91.258 91.258 2 0.0019767 32586 TMT1-4 48.796 25.24 38.108 43.401 50.56 40.981 43.508 54.19 36 44 51 41 45 52 3 3 3 3 2 2 5295.6 13663 1803 13516 20954;20955;20956;20957 27311;27312;27313;27314 27314 267 4 MELITILEK Acetyl (N-term) 1130.6257 0.62569758 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 1 0 0 0 0 5 0 1 99.833 99.833 2 2.1715E-12 32914 TMT1-4 103.56 49.358 134.77 174.31 104.05 134.52 131.12 205.19 127 174 112 131 138 196 1 1 1 1 1 1 33284 13664 1803 13516 20958 27315 27315 1 MELLAHLLGEK Unmodified 1252.6849 0.6849438 2969 Q9Y2Q3;Q9Y2Q3-3;Q9Y2Q3-2;Q9Y2Q3-4 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 8.5 0.5 1 1 76.291 76.291 3 1.2483E-06 22067 TMT1-8 110.66 77.399 461.93 614.29 469.94 375.51 454.28 645.82 436 614 486 377 472 618 4 4 4 4 4 4 78566 13665 2969 13517 20959;20960 27316;27317;27318;27319 27318 4 MELQEIQLK Unmodified 1130.6005 0.60054547 519;520;521;518 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 4.6 1.85 1 2 2 61.508 61.508 2;3 5.2652E-06 18676 TMT1-5 162.49 0 1770.8 2424.6 2039.3 1785.8 2207.7 2619.1 1673 2423 2101 1783 2275 2516 7 7 7 7 7 7 493690 13666 519;520;521;518 13518 20961;20962;20963;20964;20965 27320;27321;27322;27323;27324;27325;27326 27325 7 MELQEMQLK Unmodified 1148.557 0.55696609 551;552 P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 0 4.2 1.72 1 1 2 1 58.059 58.059 2;3 5.9264E-08 17528 TMT1-3 140.45 0 1380.4 2002.2 1637.9 1258 1552.5 2209.2 1305 1995 1683 1267 1612 2114 6 6 6 6 6 6 303630 + 13667 551;552 13519 20966;20967;20968;20969;20970 27327;27328;27329;27330;27331;27332;27333 27328 7 MELSAEYLR Acetyl (Protein N-term) 1152.5485 0.5485099 2637 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 1 0 0 0 3 0 1 69.133 69.133 2 7.6677E-05 22754 TMT1-2 119.29 82.896 0 23.408 0 7.5245 6.7267 7.2701 0 22 0 7 7 7 0 1 0 1 1 1 9722.3 13668 2637 13520 20971 27334 27334 1 MELSDANLQTLTEYLK Acetyl (Protein N-term) 1909.9343 0.93429479 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 1 0 0 0 5 0 1 95.926 95.926 3 0.002214 31831 TMT1-4 43.408 23.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13669 1310 13521 20972 27335 27335 1 MELVQVLK Acetyl (Protein N-term) 1000.5627 0.5627034 2873 Q9UI09-2;Q9UI09 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 0 1 0 0 0 5.5 0.5 1 1 84.508 84.508 2 0.004099 27486 TMT1-4 48.504 19.991 46.713 57.983 34.651 37.449 49.258 68.95 44 58 37 37 51 66 2 2 2 2 2 2 4849.1 13670 2873 13522 20973;20974 27336;27337 27336 2 MEMDDFNEVFQILLNTVK Unmodified 2185.0435 0.043527659 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 8.5 0.5 1 1 109.9 109.9 3 3.6441E-08 33964 TMT1-7 100.35 83.859 18.01 16.459 24.799 2.0352 1.8539 11.673 17 17 24 2 2 11 2 2 2 1 1 2 2079.5 13671 228 13523 20975;20976 27338;27339 27338 2 MENAELDVPIQSVFTR Oxidation (M) 1863.9037 0.90366336 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 1 0 0 4.5 0.5 1 1 67.28 67.28 2;3 0.002102 21097 TMT1-3 81.327 57.651 61.317 88.169 79.462 33.653 109.1 98.157 58 88 80 37 109 95 2 2 2 2 2 2 53770 13672 554 13524 20977;20978 27340;27341 27340 101 2 MENAELDVPIQSVFTR Unmodified 1847.9087 0.90874874 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 6.12 1.62 1 3 1 1 1 1 71.793 71.793 2;3;4 1.0958E-23 22605 TMT1-4 173.19 144.76 823.54 1109.4 770.87 684.9 833.28 1105.1 777 1107 806 683 863 1059 12 12 12 12 12 12 530820 13673 554 13524 20979;20980;20981;20982;20983;20984;20985;20986 27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354 27345 13 MEPLNNLQVAVK Unmodified 1354.7279 0.72787125 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 7 0 1 61.865 61.865 3 1.0915E-07 18193 TMT1-6 120.96 96.106 153.73 196.81 145.36 146.31 186.73 184.42 145 197 152 145 191 178 1 1 1 1 1 1 28346 13674 1467;1637 13525 20987 27355 27355 1 MEPTYQLSR Unmodified 1123.5332 0.53319418 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 44.012 44.012 2 0.00046653 11598 TMT1-4 136.99 73.683 246.02 326.7 213.87 196.05 288.69 377.65 232 326 225 196 297 362 2 2 2 2 2 2 31609 13675 1878 13526 20988;20989 27356;27357 27357 2 MEQCVEK Unmodified 922.38884 0.38883813 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 4 0 1 37.692 37.692 2 0.0088315 9392 TMT1-3 114.89 61.428 177.96 300.91 312.75 204.93 200.61 402.55 169 299 315 208 214 383 1 1 1 1 1 1 26610 13676 50 13527 20990 27358 27358 1 MEQEEELK Oxidation (M);Acetyl (N-term) 1092.4645 0.4645055 2903 Q9UL16-2;Q9UL16 CFAP45 Cilia- and flagella-associated protein 45 yes no 1 0 1 0 0 2 0 1 50.855 50.855 2 0.011862 15214 TMT1-1 81.958 24.855 107.81 168.19 133.18 123.58 155.47 181.05 102 167 138 123 160 174 1 1 1 1 1 1 73990 13677 2903 13528 20991 27359 27359 320 1 MEQELKEPGR Unmodified 1215.5918 0.59177169 2410 Q96GG9 DCUN1D1 DCN1-like protein 1 yes yes 0 0 0 0 1 4 0 1 38.676 38.676 3 0.037131 9796 TMT1-3 54.286 28.964 92.206 91.883 114.61 110.47 97.466 120.87 87 94 116 109 102 116 1 1 1 1 1 1 9162.7 13678 2410 13529 20992 27360 27360 1 MEQLSSANTR Acetyl (Protein N-term) 1177.5397 0.53973612 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 1 0 0 0 2 0 1 44.898 44.898 2 9.9321E-05 12903 TMT1-1 63.816 39.844 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13679 967 13530 20993 27361 27361 1 MEQVEILR Acetyl (Protein N-term) 1058.543 0.54303059 1592 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes yes 0 1 0 0 0 2 0 1 64.619 64.619 2 0.0017847 20593 TMT1-1 91.906 39.223 0 7.3463 6.0832 23.571 5.9889 7.2911 0 7 7 22 7 7 0 1 1 1 1 1 5200.4 13680 1592 13531 20994 27362 27362 1 MEQVNELK Acetyl (Protein N-term) 1031.4957 0.49574604 986 P31948;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 1 0 0 0 2.33 0.471 2 1 58.047 58.047 2 0.00011905 18178 TMT1-1 77.282 38.491 92.303 139.64 57.786 83.071 49.191 122.25 87 138 65 80 51 116 2 2 2 2 1 2 28638 13681 986 13532 20995;20996;20997 27363;27364;27365 27364 3 MEQVNELKEK Acetyl (N-term) 1288.6333 0.63330216 986 P31948;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 1 0 0 0 1 4 0 1 55.056 55.056 3 0.0028911 16266 TMT1-3 49.5 15.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13682 986 13533 20998 27366 27366 1 MESALDQLK Oxidation (M);Acetyl (N-term) 1091.5169 0.51687542 1053 P37837 TALDO1 Transaldolase yes yes 1 0 1 0 0 2 0 1 58.399 58.399 2 0.01191 18204 TMT1-1 71.223 37.266 23.103 59.586 33.974 28.871 42.616 60.612 22 58 36 29 44 58 1 1 1 1 1 1 4873.4 13683 1053 13534 20999 27367 27367 202 1 MESALDQLK Acetyl (N-term) 1075.522 0.52196079 1053 P37837 TALDO1 Transaldolase yes yes 1 0 0 0 0 4 0 1 70.586 70.586 2 6.0289E-05 22406 TMT1-3 94.302 61.182 207.66 276.14 210.49 174.37 173.75 250.88 196 276 218 174 182 240 2 2 2 2 2 2 42881 13684 1053 13534 21000 27368;27369 27369 2 MESALDQLK Unmodified 1033.5114 0.51139611 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 6 0 1 57.463 57.463 2 0.0074895 17060 TMT1-5 92.732 41.766 76.961 139.78 111.49 117.75 127.5 120.02 73 138 116 116 131 116 1 1 1 1 1 1 18616 13685 1053 13534 21001 27370 27370 1 MESGAYGAAK Acetyl (N-term) 1025.4488 0.44879585 200 O43760;O43760-2 SYNGR2 Synaptogyrin-2 yes no 1 0 0 0 0 3 0 1 46.756 46.756 2 0.013054 14019 TMT1-2 58.676 44.007 77.425 78.471 85.432 80.903 76.854 90.549 73 80 87 80 80 87 1 1 1 1 1 1 10760 13686 200 13536 21002 27371 27371 1 MESPIPILPLPTPDAETEK Unmodified 2077.0653 0.065308958 2486 Q99719 SEPT5 Septin-5 yes yes 0 0 0 0 0 6 0 1 79.554 79.554 4 0.042353 25816 TMT1-5 32.156 24.622 30.816 35.889 20.16 29.97 27.923 30.117 29 36 22 29 29 29 1 1 1 1 1 1 4907.8 13687 2486 13537 21003 27372 27372 1 MESSINHISQTVDIHK Unmodified 1837.8992 0.89924668 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q9NYB9-2;Q9NYB9-4;Q9NYB9 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 0 0 0 0 0 8 0 1 48.704 48.704 4 0.024964 13104 TMT1-7 40.52 21.688 84.55 91.993 138.87 100.97 118.83 151.18 80 94 138 102 123 145 1 1 1 1 1 1 6211.9 13688 2158 13538 21004 27373 27373 1 MESYHKPDQQK Acetyl (Protein N-term) 1431.6453 0.64526383 937 P29401;P29401-2 TKT Transketolase yes no 0 1 0 0 1 4 0 1 36.15 36.15 3 0.00071646 8767 TMT1-3 55.401 33.169 130.17 166.18 163.55 146.4 124.31 174.47 123 167 167 145 131 167 1 1 1 1 1 1 35694 13689 937 13540 21005 27374 27374 1 METEQPEETFPNTETNGEFGK Acetyl (Protein N-term) 2456.0326 0.032564859 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 1 0 0 0 2 0 1 67.22 67.22 3 1.8486E-10 21518 TMT1-1 64.83 61.592 7.264 22.543 22.415 0 15.156 15.558 7 22 22 0 15 15 1 1 1 0 1 1 3888 13690 1409;1410 13541 21006 27375 27375 1 MEVEQLRK Unmodified 1031.5434 0.54336494 1403 P61952 GNG11 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11 yes yes 0 0 0 0 1 6 0 1 40.98 40.98 3 0.040793 10529 TMT1-5 58.981 27.046 209.66 291.78 221.85 189.66 196.43 331.25 198 291 230 189 207 316 1 1 1 1 1 1 27260 13691 1403 13542 21007 27376 27376 1 MEVFQEYYGLPPPPGAIGPFLR Unmodified 2477.2453 0.24533901 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 8 0 1 87.149 87.149 3 5.3135E-06 28007 TMT1-7 67.251 52.245 31.72 59.09 28.898 14.41 29.136 46.073 30 58 29 15 30 44 2 2 1 1 2 2 3675.2 13692 722 13543 21008 27377;27378 27377 2 MEVGQYIFVK Unmodified 1212.6213 0.62128091 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 8 0 2 67.584 67.584 2;3 0.00010724 20524 TMT1-7 138.66 112.92 152.78 270.81 241.85 188.17 212.16 210.34 145 268 247 189 218 203 2 2 2 2 2 2 28089 13693 477 13544 21009;21010 27379;27380 27379 2 MEYLIGIQGPDYVLVASDR Acetyl (Protein N-term) 2180.0824 0.082356006 1192 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 1 0 0 0 5 0 1 98.934 98.934 3 3.2204E-05 32703 TMT1-4 43.116 32.328 7.4491 3.6314 7.3186 0 0 7.462 7 4 7 0 0 7 1 1 1 0 0 1 1861.6 13694 1192 13545 21011 27381 27381 1 MFESFIESVPLLK Unmodified 1538.8055 0.80545286 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 8 0 1 90.326 90.326 3 3.4145E-05 29179 TMT1-7 100.93 74.202 23.21 36.139 35.916 16.856 36.002 25.623 22 36 36 18 36 25 1 1 1 1 1 1 6928.5 13695 695 13546 21012 27382 27382 1 MFFEDEKPALLSQIDAEFEK Unmodified 2386.1403 0.14026482 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 1 6 0 1 82.262 82.262 4 0.0005056 26787 TMT1-5 57.496 42.726 23.089 51.992 42.787 35.593 64.038 67.463 22 51 44 36 65 65 1 1 1 1 1 1 5928.2 13696 1744 13547 21013 27383 27383 1 MFGGPGTASR Unmodified 979.45455 0.45454993 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 8 0 1 39.992 39.992 2 0.015227 9736 TMT1-7 78.324 57.764 30.493 74.924 41.357 35.95 49.62 60.412 29 73 44 36 51 58 1 1 1 1 1 1 21431 13697 575 13548 21014 27384 27384 1 MFGGPGTASRPSSSR Unmodified 1493.7045 0.70451004 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 9 0 1 33.864 33.864 3 0.0074392 6099 TMT1-8 50.563 33.195 23.466 24.978 2.3854 7.3109 10.521 18.888 22 25 4 7 11 18 1 1 1 1 1 1 2806.5 13698 575 13549 21015 27385 27385 1 MFGIDRDAIAQAVR Unmodified 1561.8035 0.8034958 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 7.5 0.5 1 1 58.24 58.24 3 4.281E-06 16920 TMT1-7 103.23 76.201 214.85 328.69 220.43 243.97 218.94 364.72 203 326 233 239 232 348 2 2 2 2 2 2 58585 13699 937 13550 21016;21017 27386;27387 27387 2 MFGIPVVVAVNAFK Unmodified 1490.8319 0.83194239 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 9 0 2 86.49 86.49 2;3 2.0851E-09 26097 TMT1-8 114.89 89.678 124.3 121.79 105.46 101.96 172.44 142.19 117 124 109 102 174 138 2 2 2 2 2 2 19127 13700 657 13551 21018;21019 27388;27389 27389 2 MFGSSVDLGNLGQ Unmodified 1323.6129 0.61290107 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 6.5 0.5 1 1 75.839 75.839 2 0.0002104 23742 TMT1-6 78.098 60.112 54.378 26.596 35.466 36.281 50.667 29.468 51 29 36 36 51 29 1 1 1 1 1 1 4909.1 13701 695 13552 21020;21021 27390;27391 27391 2 MFIGGLSWDTSK Unmodified 1340.6435 0.64347291 120 O14979-3;O14979-2;O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 0 9 0 1 72.897 72.897 2 6.5646E-09 20794 TMT1-8 141.88 103.52 38.24 35.133 35.413 27.79 95.53 44.178 36 36 36 29 94 44 1 1 1 1 1 1 7554.4 13702 120 13553 21022 27392 27392 1 MFIGGLSWDTTK Unmodified 1354.6591 0.65912298 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 9 0 1 73.246 73.246 3 3.9781E-06 20989 TMT1-8 107.06 63.971 153.19 241.73 197.7 149.81 241.61 287.32 145 240 203 152 247 276 2 2 2 2 2 2 33085 13703 1748 13554 21023 27393;27394 27394 2 MFIGGLSWDTTKK Unmodified 1482.7541 0.754086 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 1 9 0 2 65.039 65.039 3;4 0.00094836 17689 TMT1-8 66.267 46.943 461.72 596.43 521.11 441.01 470.84 715.71 436 598 535 440 493 684 3 3 3 3 3 3 52886 13704 1748 13555 21024;21025 27395;27396;27397 27397 3 MFILQSK Unmodified 865.47316 0.47316011 247 O60925 PFDN1 Prefoldin subunit 1 yes yes 0 0 0 0 0 9 0 1 60.679 60.679 2 0.012013 15958 TMT1-8 114.6 47.57 107.89 129.57 151.69 100.06 126.7 166.94 102 131 152 102 131 160 1 1 1 1 1 1 14578 13705 247 13556 21026 27398 27398 1 MFILSDGEGK Unmodified 1095.527 0.52704617 1016 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 0 7 0 1 62.853 62.853 2 5.6946E-06 18600 TMT1-6 121.73 84.257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13706 1016 13557 21027 27399 27399 1 MFIVISEPDMIK Oxidation (M) 1437.7248 0.7247597 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 1 0 0 7 0 1 71.592 71.592 3 0.038226 22118 TMT1-6 54.343 33.914 30.654 51.627 34.08 36.374 50.113 45.474 29 51 36 36 51 44 1 1 1 1 1 1 9128.4 13707 876 13558 21028 27400 27400 164 1 MFIVISEPDMIK Unmodified 1421.7298 0.72984508 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 8 0 1 76.905 76.905 2 0.0024967 24188 TMT1-7 85.29 50.066 30.839 20.844 29.008 21.647 35.635 29.897 29 22 29 22 36 29 1 1 1 1 1 1 3949.3 13708 876 13558 21029 27401 27401 1 MFLGDNAHLSIINEYLSQSYQK Unmodified 2570.2475 0.24752385 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 76.347 76.347 4 4.7688E-17 22184 TMT1-8 106.03 78.752 54.151 64.821 41.132 51.944 71.662 67.245 51 65 44 51 73 65 1 1 1 1 1 1 9273.6 13709 1139 13559 21030 27402 27402 1 MFLSFPTTK Unmodified 1070.5471 0.54705333 1499 P69905;CON__P01966 HBA1 Hemoglobin subunit alpha yes no 0 0 0 0 0 7 3.46 1 3 69.085 69.085 2;3 2.7632E-15 19134 TMT1-8 195.06 126.28 13164 13806 9296.1 7882.6 2628.9 6716.5 12385 13956 9743 7764 3080 6371 7 7 7 7 7 7 2374900 13710 1499 13560 21031;21032;21033;21034 27403;27404;27405;27406;27407;27408;27409 27406 7 MFLSFPTTK Oxidation (M) 1086.542 0.54196796 1499 P69905;CON__P01966 HBA1 Hemoglobin subunit alpha yes no 0 0 1 0 0 9 0 3 65.196 65.196 2;3 0.00031607 16616 TMT1-8 134.48 63.954 1187.9 1063.7 891.71 882.88 384.32 542.29 1117 1089 925 863 424 519 3 3 3 3 3 3 152310 13711 1499 13560 21035;21036;21037 27410;27411;27412 27410 243 3 MFLVNSFLK Acetyl (Protein N-term);Oxidation (M) 1155.5998 0.59981719 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 1 1 0 0 9 0 2 94.917 94.917 2 0.0021638 31549 TMT1-8 41.429 17.873 30.536 75.043 34.086 28.987 36.051 38.413 29 73 37 29 37 37 2 2 2 2 2 2 4791.4 13712 475 13561 21038;21039 27413;27414 27414 68 2 MFLVNSFLK Acetyl (Protein N-term) 1139.6049 0.60490256 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 1 0 0 0 9 0 1 101.81 101.81 2 7.2729E-23 31752 TMT1-8 136.16 89.589 253.94 398.75 263.73 290.58 276.79 384.39 240 395 279 285 290 368 3 3 3 3 3 3 83608 13713 475 13561 21040 27415;27416;27417 27416 3 MFLYADNEDR Unmodified 1272.5445 0.54448715 2701 Q9NP79;Q9NP79-2 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 0 0 0 0 0 5 0 1 56.319 56.319 2 0.0092563 16497 TMT1-4 85.355 52.806 15.865 29.56 13.557 18.402 24.67 18.484 15 29 15 18 25 18 1 1 1 1 1 1 2997.7 13714 2701 13562 21041 27418 27418 1 MFSPGQEEHCAPNK Oxidation (M) 1646.6817 0.68172569 2672 Q9HAT8 PELI2 E3 ubiquitin-protein ligase pellino homolog 2 yes yes 0 0 1 0 0 6 0 1 26.381 26.381 4 0.042388 4899 TMT1-5 41.092 9.6607 798.99 765.93 859.43 765.39 1154.8 500.05 753 784 872 767 1154 500 2 2 2 2 2 2 59725 13715 2672 13563 21042 27419;27420 27419 312 2 MFSWLGTDDR Acetyl (Protein N-term) 1268.5496 0.54957253 2802 Q9NZN3;Q9NZN3-2 EHD3 EH domain-containing protein 3 yes no 0 1 0 0 0 5.5 0.5 1 1 88.006 88.006 2 0.0001353 28902 TMT1-4 76.17 52.741 30.816 35.89 20.105 31.21 20.28 37.797 29 36 22 30 22 36 1 1 1 1 1 1 8685.5 13716 2802 13564 21043;21044 27421;27422 27421 2 MFSWLGTDDRR Acetyl (N-term) 1424.6507 0.65068356 2802 Q9NZN3;Q9NZN3-2 EHD3 EH domain-containing protein 3 yes no 1 0 0 0 1 6 0 1 72.401 72.401 2 0.00016575 22934 TMT1-5 72.879 42.562 15.735 29.196 35.828 29.026 28.479 15.177 15 29 36 29 29 15 1 1 1 1 1 1 23077 13717 2802 13565 21045 27423 27423 1 MFSWVSK Acetyl (Protein N-term) 925.43677 0.4367746 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 1 0 0 0 9 0 1 81.14 81.14 2 0.0016672 24017 TMT1-8 68.915 50.184 138.98 127.36 158.93 131.27 129.95 243.6 131 131 160 131 138 232 1 1 1 1 1 1 27485 13718 2654 13566 21046 27424 27424 1 MFTAGIDLMDMASDILQPK Unmodified 2095.9992 0.99922 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 8 0 2 101.42 101.42 3;4 6.8899E-07 32984 TMT1-7 86.367 70.601 9.5192 25.938 1.1804 6.089 21.195 14.319 9 25 2 6 21 14 2 2 1 2 2 2 2285.1 13719 1663 13567 21047;21048 27425;27426 27425 2 MFVGGLSWDTSK Unmodified 1326.6278 0.62782285 2487 Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 0 9 0 1 69.811 69.811 3 0.00068127 19562 TMT1-8 74.962 39.002 92.284 123.4 74.717 89.21 75.922 106.57 87 123 80 87 80 102 1 1 1 1 1 1 11978 13720 2487 13568 21049 27427 27427 1 MFVLDEADEMLSR Unmodified 1554.7058 0.70581517 1358;1765 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 4.5 0.5 1 1 77.967 77.967 2 2.7258E-13 25291 TMT1-3 165.66 151.99 84.302 185.2 101.47 110.73 125.71 150.98 80 181 109 109 130 145 2 2 2 2 2 2 27367 13721 1358;1765 13569 21050;21051 27428;27429 27428 2 MFVLNELVQTEK Unmodified 1449.7538 0.75375164 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 8 0 1 74.9 74.9 2 6.1665E-07 23408 TMT1-7 120.06 88.988 30.636 44.022 43.577 27.731 72.776 67.213 29 44 44 29 73 65 1 1 1 1 1 1 4623.3 13722 214 13570 21052 27430 27430 1 MFVLNELVQTEKDYVK Unmodified 1955.0074 0.0074001489 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 1 8 0 1 76.586 76.586 3 2.8357E-11 24083 TMT1-7 119.65 96.321 61.106 125.36 83.406 65.068 53.485 122.13 58 123 87 65 58 116 1 1 1 1 1 1 9443.8 13723 214 13571 21053 27431 27431 1 MFVSESK Unmodified 826.38949 0.38949006 296 O75695 RP2 Protein XRP2 yes yes 0 0 0 0 0 7 0 1 47.212 47.212 2 0.017734 12407 TMT1-6 99.375 52.712 84.686 132.31 81.79 89.325 105.51 128.11 80 131 87 88 109 123 1 1 1 1 1 1 8634.4 13724 296 13572 21054 27432 27432 1 MFVVAEADAGSCLLHEFTISGTTYTPEGEVR Unmodified 3386.5799 0.57989296 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 6 0 1 82.247 82.247 4 2.139E-14 26795 TMT1-5 90.616 83.241 30.746 20.584 44.894 29.727 20.605 30.326 29 22 44 30 22 29 1 1 1 1 1 1 6848.2 13725 2344 13573 21055 27433 27433 1 MGESDDSILR Unmodified 1121.5023 0.50228798 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 0 2.5 0.5 1 1 46.593 46.593 2 0.012156 13662 TMT1-1 81.163 65.582 170.11 277.64 208.76 191.22 212.94 396.87 161 275 217 190 225 378 3 3 3 3 3 3 24981 13726 1476 13574 21056;21057 27434;27435;27436 27435 3 MGFGGTLEIK Unmodified 1051.5372 0.53721693 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 8 0 1 62.105 62.105 3 0.00034561 18374 TMT1-7 71.614 28.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13727 1857 13575 21058 27437 27437 1 MGGEEKPIGAGEEK Unmodified 1430.6711 0.67114423 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 4 0 1 40.599 40.599 3 0.00072441 10561 TMT1-3 77.192 48.895 92.108 91.611 131.26 101.4 120.13 112.77 87 94 131 102 123 109 1 1 1 1 1 1 7954 13728 902 13576 21059 27438 27438 1 MGGSSGALYGLFLTAAAQPLK Unmodified 2052.0714 0.071397389 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 9 0 1 85.04 85.04 4 0.025551 25481 TMT1-8 31.635 13.497 38.194 35.004 43.323 44.717 42.144 53.163 36 36 44 44 44 51 1 1 1 1 1 1 4788.7 13729 1928 13577 21060 27439 27439 1 MGIGGLDKEFSDIFR Unmodified 1683.829 0.82904185 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 1 8 0 1 73.341 73.341 3 0.0061458 22753 TMT1-7 60.901 44.778 92.443 108.73 60.387 66.288 61.564 98.447 87 109 65 65 65 94 1 1 1 1 1 1 8913.3 13730 1129 13578 21061 27440 27440 1 MGIYVGAK Unmodified 837.44186 0.44185998 1559;765 P17858;P17858-2;Q01813 PFKL;PFKP ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 0 0 0 0 0 8.5 0.5 1 1 51.504 51.504 2 0.012002 12333 TMT1-8 86.512 9.7072 309.11 399.67 368.06 297.04 299.84 405.05 292 401 376 297 313 388 2 2 2 2 2 2 25858 13731 765;1559 13579 21062;21063 27441;27442 27442 2 MGLALSSLNK Unmodified 1032.5638 0.56376603 201 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 0 9 0 1 60.753 60.753 3 0.00064733 16024 TMT1-8 93.649 46.046 68.808 94.078 77.669 65.09 70.508 83.268 65 94 80 65 73 80 1 1 1 1 1 1 6033.2 13732 201 13580 21064 27443 27443 1 MGLALTALNKFEEAVTSYQK Unmodified 2213.1402 0.14020524 2398 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta yes yes 0 0 0 0 1 9 0 1 90.276 90.276 4 2.5261E-05 27531 TMT1-8 65.784 42.303 23.116 35.876 52.008 20.31 33.827 84.315 22 36 51 22 36 80 1 1 1 1 1 1 1844.9 13733 2398 13581 21065 27444 27444 1 MGLVDQLVEPLGPGLKPPEER Unmodified 2273.209 0.2089535 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 1 6.33 0.471 2 1 73.025 73.025 3;4 9.841E-06 23190 TMT1-5 73.672 57.366 129.81 212.66 184.92 138.28 139.63 165.51 123 211 189 139 145 159 3 3 3 3 3 3 35274 13734 1076 13582 21066;21067;21068 27445;27446;27447 27445 3 MGMEAVMALLEATPDTPACVVTLSGNQSVR Unmodified 3147.5073 0.50726207 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 8 0 1 95.828 95.828 4 8.0601E-05 31238 TMT1-7 51.783 51.519 30.769 35.758 28.219 29.476 36.007 39.04 29 36 29 29 37 37 3 3 2 2 3 1 4071.9 13735 765 13583 21069 27448;27449;27450 27449 3 MGPGAASGGERPNLK Unmodified 1440.7143 0.71434645 2616 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 0 0 0 0 1 7 0 2 37.826 37.826 3;4 1.2218E-14 8710 TMT1-6 132.06 99.991 541.11 980.05 738.95 636.04 626.75 940.45 513 967 766 633 658 899 2 2 2 2 2 2 68232 13736 2616 13584 21070;21071 27451;27452 27451 2 MGPGATAGGAEK Unmodified 1045.4862 0.48624399 1444 P62820;P62820-2;P62820-3 RAB1A Ras-related protein Rab-1A yes no 0 0 0 0 0 5 0 1 36.111 36.111 2 0.0084254 8561 TMT1-4 75.416 42.038 69.328 41.559 34.807 29.235 20.628 30.325 65 44 36 29 22 29 1 1 1 1 1 1 10422 13737 1444 13585 21072 27453 27453 1 MGPLINRPHLER Unmodified 1431.7769 0.77688712 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 1 8 0 1 38.921 38.921 4 0.0012145 9223 TMT1-7 78.043 54.746 84.887 109.12 67.689 97.011 90.222 106.16 80 109 73 94 94 102 1 1 1 1 1 1 7883.2 13738 1171 13586 21073 27454 27454 1 MGPTELLIEMEDWK Oxidation (M) 1706.7895 0.7895448 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 1 0 0 5.75 0.433 1 3 79.015 79.015 2;3 7.8478E-17 26402 TMT1-4 150.21 125.05 293.65 385.27 273.48 206.73 403.59 367.98 277 385 284 211 407 356 4 4 4 4 4 4 66220 13739 438 13587 21074;21075;21076;21077 27455;27456;27457;27458;27459 27455 53;54 5 MGPTELLIEMEDWK Unmodified 1690.7946 0.79463018 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.5 0.5 2 2 87.31 87.31 2;3 2.8945E-17 28621 TMT1-4 150.21 122.57 786.45 1053.9 740.53 813.3 850.44 1195.2 742 1052 780 798 888 1144 6 6 6 5 6 6 274320 13740 438 13587 21078;21079;21080;21081 27460;27461;27462;27463;27464;27465 27461 6 MGPTELLIEMEDWKGDK Unmodified 1990.938 0.93799995 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 6 0 2 79.611 79.611 3;4 5.7737E-19 25767 TMT1-5 136.48 111.28 831.01 1076.3 624.86 630.21 542.68 1233.9 783 1074 667 620 587 1172 4 4 4 4 4 4 199130 13741 438 13588 21082;21083 27466;27467;27468;27469 27468 4 MGQEFVESK Unmodified 1053.4801 0.48009598 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 0 5 0 1 48.595 48.595 2 0.0019579 13475 TMT1-4 109.42 80.071 77.107 116.44 106.68 87.175 82.832 121.29 73 116 109 87 87 116 1 1 1 1 1 1 10487 13742 3064 13589 21084 27470 27470 1 MGVAAHK Unmodified 712.36903 0.36902939 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 8 0 1 30.682 30.682 3 0.006719 6059 TMT1-7 88.591 54.204 590.95 842.91 594.4 586.75 916.24 830.92 558 839 623 585 929 804 1 1 1 1 1 1 27822 13743 486 13590 21085 27471 27471 1 MGVAAHKK Oxidation (M) 856.45891 0.45890703 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 1 0 1 8.5 0.5 1 1 25.106 25.106 4 0.01298 4123 TMT1-7 69.176 47.248 201.05 192.81 130.13 148.31 245.06 249.91 189 196 138 147 249 241 2 2 2 2 2 2 6734.1 13744 486 13591 21086;21087 27472;27473 27472 70 2 MGVAAHKK Unmodified 840.46399 0.46399241 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 1 9 0 2 29.907 29.907 3;4 0.0033038 4933 TMT1-8 71.869 39.738 266.51 314.82 205.47 228.37 282.11 312.82 251 316 218 225 290 301 3 3 3 3 3 3 12142 13745 486 13591 21088;21089 27474;27475;27476 27475 3 MGVPICGACR Unmodified 1119.4987 0.49873971 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 0 7.5 0.5 1 1 44.804 44.804 2 4.2325E-14 11480 TMT1-7 183.89 170.54 229.94 348.55 371.81 242.1 303.39 375.1 218 348 374 247 313 360 2 2 2 2 2 2 60805 13746 1149;2097 13592 21090;21091 27477;27478 27478 2 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR Unmodified 3503.7871 0.78712404 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 1 7 0 1 74.571 74.571 4 1.31E-21 23177 TMT1-6 93.295 87.403 23.291 28.808 28.566 21.684 35.083 45.903 22 29 29 22 36 44 1 1 1 1 1 1 17864 13747 840 13593 21092 27479 27479 1 MHEDINEEWISDK Unmodified 1644.709 0.7089863 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 3 0 1 53.053 53.053 3 8.3936E-05 16465 TMT1-2 73.219 68.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13748 929 13594 21093 27480 27480 1 MHGGGPTVTAGLPLPK Unmodified 1531.8181 0.81808324 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8 0 1 51.511 51.511 3 0.0018179 14203 TMT1-7 46.408 17.432 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13749 657 13595 21094 27481 27481 1 MHSLLIK Unmodified 840.48914 0.48914452 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 46.01 46.01 3 0.0021264 10204 TMT1-8 104.76 38.677 222.25 307.35 257.78 235.02 228.02 355.93 210 307 266 233 240 340 1 1 1 1 1 1 10613 13750 1287 13596 21095 27482 27482 1 MIAAVDTDSPR Unmodified 1174.5652 0.56522259 1611 Q07812-5;Q07812-8;Q07812;Q07812-2;Q07812-7;Q07812-6 BAX Apoptosis regulator BAX yes no 0 0 0 0 0 4 0 1 45.925 45.925 2 0.0017815 12640 TMT1-3 96.342 53.259 84.761 108.77 89.095 127.05 110.56 143.95 80 109 94 123 116 138 1 1 1 1 1 1 14963 13751 1611 13597 21096 27483 27483 1 MIAGQVLDINLAAEPK Unmodified 1681.9073 0.90729217 547 P07910-2;P07910-4;P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 0 6.67 0.471 1 2 72.714 72.714 3;4 4.7413E-09 23065 TMT1-5 113.59 85.617 375.7 539.01 420.25 363.41 441.19 586.5 355 537 435 363 457 562 5 5 5 5 5 5 117680 13752 547 13598 21097;21098;21099 27484;27485;27486;27487;27488 27484 5 MIAILTENYGGK Unmodified 1308.6748 0.67477304 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 2 68.776 68.776 2;3 2.768E-07 20968 TMT1-7 125.74 78.48 169.26 125.96 120.13 126.3 110.33 151.42 159 131 124 124 116 145 2 2 2 2 2 2 27611 13753 902 13599 21100;21101 27489;27490 27490 2 MIDMAEPAQRK Oxidation (M) 1304.6217 0.62169161 2240 Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 PUM2 Pumilio homolog 2 yes no 0 0 1 0 1 8 0 1 66.722 66.722 2 0.038553 20267 TMT1-7 45.68 10.988 38.112 50.968 43.457 20.224 65.514 45.035 36 51 44 22 65 44 1 1 1 1 1 1 56248 13754 2240 13600 21102 27491 27491 288 1 MIEEAGAIISTR Unmodified 1289.6649 0.66493664 42 O00154-4;O00154-2;O00154-3;O00154-6;O00154-5;O00154-7;O00154 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 0 5 0 1 60.4 60.4 2 0.00054465 18114 TMT1-4 98.254 70.086 46.523 49.898 73.53 50.006 72.008 59.773 44 51 73 51 73 58 1 1 1 1 1 1 8960.6 13755 42 13601 21103 27492 27492 1 MIFIPSSIAFLTTLER Unmodified 1838.0012 0.001192559 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 9 0 2 94.591 94.591 3 1.7752E-07 29194 TMT1-8 84.508 52.473 7.2601 14.978 29.468 21.886 21.479 15.377 7 15 29 22 22 15 1 1 1 1 1 1 7293.6 13756 2204 13602 21104;21105 27493;27494 27494 2 MIFVGIK Unmodified 806.47243 0.47243183 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 0 9 0 1 65.433 65.433 2 0.0082772 17936 TMT1-8 140.79 68.557 725.94 1056.9 807.78 642.54 818.34 1170.6 686 1052 835 646 849 1120 2 2 2 2 2 2 103650 13757 1533 13603 21106 27495;27496 27496 2 MIHILLYYK Phospho (STY) 1272.6342 0.63416758 304 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 1 0 9 0 1 68.054 68.054 2 0.040811 18877 TMT1-8 41.984 21.975 30.76 28.177 36.161 21.211 36.152 45.872 29 29 36 22 37 44 1 1 1 1 1 1 89950 13758 304 13604 21107 27497 27497 23 1 MIKPFFHSLSEK Oxidation (M) 1478.7592 0.75917137 632 P10599 TXN Thioredoxin yes yes 0 0 1 0 1 9 0 1 50.385 50.385 4 0.0002331 11916 TMT1-8 85.554 56.199 278.92 311.56 286.93 175.79 321.08 283.99 263 315 291 182 324 275 1 1 1 1 1 1 19136 13759 632 13605 21108 27498 27498 118 1 MIKPFFHSLSEK Unmodified 1462.7643 0.76425675 632 P10599 TXN Thioredoxin yes yes 0 0 0 0 1 9 0 1 55.333 55.333 4 1.8441E-06 13923 TMT1-8 109.72 79.329 727.18 1391.3 1037.8 980.16 1025.6 1506.8 690 1370 1080 971 1073 1441 2 2 2 2 2 2 71635 13760 632 13605 21109 27499;27500 27500 2 MILELFSK Unmodified 979.54124 0.54123967 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 9 0 1 79.634 79.634 2 0.0012137 23456 TMT1-8 148.38 50.249 926.94 1579.4 1388.5 1211.3 1456.2 1602.2 879 1565 1425 1209 1498 1542 2 2 2 2 2 2 214470 13761 1506 13606 21110 27501;27502 27502 2 MILLEVNNR Unmodified 1100.6012 0.60121417 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 59.803 59.803 2 6.1947E-05 17452 TMT1-7 152.47 109.47 550.59 756.2 597.75 584.26 630.96 765.51 520 755 621 578 654 735 3 3 3 3 3 3 124520 13762 129 13607 21111;21112 27503;27504;27505 27504 3 MILMYEEK Unmodified 1055.5031 0.50313961 1306 P55008;P55008-2 AIF1 Allograft inflammatory factor 1 yes no 0 0 0 0 0 6 0 1 61.708 61.708 2 0.022402 18757 TMT1-5 87.251 46.062 91.585 192.69 133.55 84 166.48 126.37 87 189 138 87 167 123 1 1 1 1 1 1 12270 13763 1306 13608 21113 27506 27506 1 MININILSVCK Unmodified 1303.6992 0.69921365 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 0 9 0 1 72.868 72.868 3 0.002696 20779 TMT1-8 69.01 43.072 38.048 58.342 48.109 75.895 54.563 76.261 36 58 51 73 58 73 1 1 1 1 1 1 5108.4 13764 1948 13609 21114 27507 27507 1 MINLSVPDTIDER Oxidation (M) 1517.7396 0.73955814 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 1 0 0 4 0 2 59.586 59.586 2;3 0.0061645 18110 TMT1-3 68.277 41.604 130.24 198.74 124.63 101.69 125.85 189.35 123 197 131 102 131 181 3 3 3 3 3 3 61863 13765 690;691 13610 21115;21116 27508;27509;27510 27509 129 3 MINLSVPDTIDER Unmodified 1501.7446 0.74464352 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 5 0 2 65.466 65.466 2;3 5.0923E-21 20122 TMT1-4 182.23 122.33 137.71 235.9 99.223 86.808 125.99 205.34 130 232 109 87 131 196 2 2 2 2 2 2 347180 13766 690;691 13610 21117;21118 27511;27512 27512 2 MINTDLSR Unmodified 948.46987 0.46986564 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 6 0 1 44.288 44.288 2 0.0018638 11886 TMT1-5 83.623 42.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13767 1041 13611 21119 27513 27513 1 MIPCDFLIPVQTQHPIR Unmodified 2064.0649 0.064872223 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 9 0 1 67.075 67.075 3 5.0458E-14 18510 TMT1-8 111.64 87.085 77.512 78.714 70.55 74.582 53.304 114.67 73 80 73 73 58 109 1 1 1 1 1 1 18281 13768 516 13612 21120 27514 27514 1 MISAAQLLDELMGR Acetyl (Protein N-term) 1588.7953 0.79529888 342 O95232;O95232-2 LUC7L3 Luc7-like protein 3 yes no 0 1 0 0 0 6 0 1 111.77 111.77 2 7.9804E-06 34526 TMT1-5 51.013 34.439 2.1127 2.9985 3.0554 0 2.0574 1.0073 2 3 3 0 2 1 1 1 1 0 1 1 365.81 13769 342 13613 21121 27515 27515 1 MISDAIPELK Unmodified 1115.5896 0.58964643 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 64.861 64.861 2 0.0002391 20054 TMT1-5 127.3 82.219 521.5 748.15 624.05 566.54 792.19 815.27 493 746 644 566 809 786 3 3 3 3 3 3 51851 13770 1075 13614 21122 27516;27517;27518 27518 3 MISDLIAGGIQPLQNLSVLK Unmodified 2109.1868 0.1867615 196 O43708-2;O43708 GSTZ1 Maleylacetoacetate isomerase yes no 0 0 0 0 0 9 0 1 92.642 92.642 4 0.00034703 28393 TMT1-8 55.763 36.185 15.822 29.439 20.96 22.403 20.942 30.316 15 29 22 22 22 29 1 1 1 1 1 1 2983.7 13771 196 13615 21123 27519 27519 1 MISGMYLGEIVR Unmodified 1367.6941 0.69412828 787;1275 P19367-4;P19367-2;P19367;P19367-3;P52790 HK1;HK3 Hexokinase-1;Hexokinase-3 no no 0 0 0 0 0 8 0 1 69.164 69.164 3 0.0057348 21155 TMT1-7 46.069 34.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13772 787;1275 13616 21124 27520 27520 1 MISLTDTQK Acetyl (Protein N-term) 1077.5376 0.53761086 2997 Q9Y3E0 GOLT1B Vesicle transport protein GOT1B yes yes 0 1 0 0 0 4 0 1 65.071 65.071 2 0.0011485 20211 TMT1-3 44.349 15.837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13773 2997 13617 21125 27521 27521 1 MITSAAGIISLLDEDEPQLK Unmodified 2143.1082 0.10823641 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 6 0 1 89.492 89.492 4 0.0013598 29473 TMT1-5 52.298 44.111 23.368 21.469 21.744 14.694 21.553 22.837 22 22 22 15 22 22 1 1 1 1 1 1 4722.7 13774 2465 13618 21126 27522 27522 1 MIVGTLK Unmodified 760.4517 0.45169638 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 0 9 0 1 53.46 53.46 2 0.0067878 13164 TMT1-8 105.39 30.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13775 368 13619 21127 27523 27523 1 MIVVLGEIGGTEEYK Unmodified 1636.8382 0.83820956 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 6 0 1 74.25 74.25 2 0.00056581 23701 TMT1-5 63.415 57.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13776 1283 13620 21128 27524 27524 1 MIYASSK Unmodified 798.39458 0.39457544 865;1364 P23528;Q9Y281-3;Q9Y281;P60981;P60981-2 CFL1;CFL2;DSTN Cofilin-1;Cofilin-2;Destrin no no 0 0 0 0 0 8 0.816 1 1 1 43.438 43.438 2 3.5779E-05 10984 TMT1-7 162.51 133.18 4860.6 7534.8 4986.4 4614.6 6168.1 8054.6 4593 7468 5239 4600 6364 7721 4 4 4 4 4 4 700250 13777 865;1364 13621 21129;21130;21131 27525;27526;27527;27528 27527 4 MIYCIHALSLYLFK Unmodified 1770.9201 0.92010547 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 9 0 1 82.356 82.356 3 0.0022584 24495 TMT1-8 57.106 38.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13778 1723 13622 21132 27529 27529 1 MKDAIIAK Unmodified 888.51027 0.5102739 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 8 0 1 45.525 45.525 3 0.039116 11880 TMT1-7 61.56 21.851 187.67 453.83 354.65 344.7 307.36 548.75 179 444 368 340 327 523 1 1 1 1 1 1 23898 13779 2267 13623 21133 27530 27530 1 MKEIAEAYLGK Unmodified 1251.6533 0.65330932 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 1 8 0 2 62.038 62.038 2;3 0.00054031 18409 TMT1-7 97.551 80.807 1119.5 1792.2 1123.2 1077 1127.5 1700.1 1058 1773 1187 1066 1181 1625 2 2 2 2 2 2 268750 13780 641 13624 21134;21135 27531;27532 27532 2 MKEIAEAYLGYPVTNAVITVPAYFNDSQR Unmodified 3259.6224 0.62235013 618 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 8 0 1 83.226 83.226 4 0.00011623 26554 TMT1-7 52.268 50.83 108.62 100.3 53.957 74.433 113.78 120.41 102 102 59 73 116 116 3 3 3 3 3 3 10792 13781 618 13625 21136 27533;27534;27535 27533 3 MKETAEAYLGK Unmodified 1239.6169 0.61692381 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 7 0 3 53.676 53.676 2;3;4 2.5254E-08 14962 TMT1-6 124.1 97.005 255.09 468.14 372.7 301.11 301.71 558.5 242 462 384 301 320 532 2 2 2 2 2 2 69032 13782 640 13626 21137;21138;21139 27536;27537;27538 27538 3 MKETAENYLGHTAK Unmodified 1591.7664 0.7664416 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 1 7 0 1 46.02 46.02 4 7.0752E-05 12118 TMT1-6 88.974 62.538 183.56 365.96 217.87 206.35 251.34 263.59 174 359 231 205 258 254 1 1 1 1 1 1 239000 13783 1058 13627 21140 27539 27539 1 MKGDVDVSLPK Unmodified 1187.622 0.62200919 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 7 0 1 50.289 50.289 3 0.0061503 13601 TMT1-6 73.466 3.0545 208.08 346.57 260.47 147.65 157.44 365.41 197 343 267 152 169 347 1 1 1 1 1 1 24742 13784 1632 13628 21141 27540 27540 1 MKGDYFR Unmodified 915.42727 0.42727255 909;984 P27348;P31946;P31946-2 YWHAQ;YWHAB 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 0 0 0 0 1 8 0 1 40.071 40.071 3 0.0087523 9670 TMT1-7 93.561 62.503 1933.7 2626.8 2081.5 1642.1 2216.6 3098.5 1826 2624 2146 1654 2293 2966 1 1 1 1 1 1 117480 13785 909;984 13629 21142 27541 27541 1 MKGDYYR Unmodified 931.42219 0.42218717 1471;1411;1588;985 P63104;P63104-2;P31947-2;P31947;P61981;Q04917 YWHAZ;SFN;YWHAG;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 0 0 0 0 1 6.5 0.5 1 1 34.171 34.171 3 0.034268 7382 TMT1-6 68.625 42.732 2222.5 2720.1 2335.1 1837.6 2116.2 3414.8 2097 2734 2395 1845 2216 3260 2 2 2 2 2 2 204440 13786 1471;985;1411;1588 13630 21143;21144 27542;27543 27543 2 MKLDYILGLK Unmodified 1192.689 0.68896654 1135 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 1 9 0 1 69.556 69.556 3 0.002626 19488 TMT1-8 75.695 39.411 107.91 144.73 135.96 92.786 98.536 113.38 102 145 138 94 102 109 1 1 1 1 1 1 10086 13787 1135 13631 21145 27544 27544 1 MKMADAK 2 Oxidation (M) 825.37246 0.37245979 118 O14974-4;O14974;O14974-3;O14974-2 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 2 0 1 7 0 1 69.639 69.639 2 0.024071 21509 TMT1-6 59.853 7.2725 37.964 65.664 56.022 58.437 86.022 66.835 36 65 58 58 87 65 1 1 1 1 1 1 1121400 13788 118 13632 21146 27545 27545 17;18 1 MKPLMGVIYVPLTDKEK Unmodified 1961.073 0.072977294 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 2 9 0 1 65.949 65.949 4 4.4247E-05 18067 TMT1-8 71.601 56.347 92.087 146.6 88.18 95.823 88.444 159.51 87 145 94 94 94 152 1 1 1 1 1 1 11383 13789 840 13633 21147 27546 27546 1 MKPVPDLVPGNFK Unmodified 1440.7799 0.77990682 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 7 3.03 1 2 2 60.272 60.272 3;4 0.00014495 15804 TMT1-8 90.759 66.377 1550.6 2143.7 1590.3 1484.8 1382.9 2520 1464 2138 1657 1469 1470 2401 5 5 5 5 5 5 605100 13790 437 13634 21148;21149;21150;21151;21152 27547;27548;27549;27550;27551 27551 5 MKPVPDLVPGNFK Oxidation (M) 1456.7748 0.77482144 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 1 0 1 9 0 1 55.506 55.506 3 0.0019073 14016 TMT1-8 62.528 37.091 261.94 363.99 210.48 220.18 236.74 304.52 247 362 225 217 246 292 2 2 2 2 2 2 27325 13791 437 13634 21153 27552;27553 27553 50 2 MLAAYLYEVSQLKD Unmodified 1642.8276 0.82764487 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 1 8.5 0.5 1 1 86.683 86.683 3 1E-11 26081 TMT1-8 124.38 91.182 161.53 232.9 246.57 156.75 182.43 234.64 153 233 248 160 189 225 3 3 3 3 3 3 39938 13792 2434 13635 21154;21155 27554;27555;27556 27556 3 MLAEDELR Unmodified 975.46953 0.46953129 1519 P84077;P61204;P61204-2 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 0 0 0 2.5 0.5 1 1 47.978 47.978 2 0.0004234 14355 TMT1-2 151.56 60.855 715.76 899.39 849.64 644.74 859.51 943.4 676 904 865 651 881 908 4 4 4 4 4 4 113450 13793 1519 13636 21156;21157 27557;27558;27559;27560 27559 4 MLAEDELRDAVLLVFANK Oxidation (M) 2062.0769 0.076876698 1519 P84077;P61204;P61204-2 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 1 0 1 7.5 0.5 1 1 87.982 87.982 3;4 0.0016765 28371 TMT1-7 67.707 46.614 123.11 128.01 119.88 110.06 102.95 175.08 116 130 123 109 109 167 2 2 2 2 2 2 24156 13794 1519 13637 21158;21159 27561;27562 27562 245 2 MLAEDELRDAVLLVFANK Unmodified 2046.082 0.081962076 1519 P84077;P61204;P61204-2 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 0 0 1 8.2 0.748 1 2 2 91.048 91.048 3;4 4.0716E-62 29538 TMT1-7 218.78 187.78 505.01 813.98 635.12 498.61 533.85 1027.3 478 807 655 500 566 978 9 9 9 9 9 9 188570 13795 1519 13637 21160;21161;21162;21163;21164 27563;27564;27565;27566;27567;27568;27569;27570;27571 27565 9 MLAIYDGFDGFAK Oxidation (M) 1462.6803 0.68025235 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 0 0 7.5 0.5 1 1 71.245 71.245 3 0.00074767 21965 TMT1-7 59.975 48.6 92.466 53.753 103.11 80.021 67.696 145.18 87 58 102 80 73 138 1 1 1 1 1 1 4963.2 13796 1559 13638 21165;21166 27572;27573 27573 252 2 MLAIYDGFDGFAK Unmodified 1446.6853 0.68533773 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 7.5 0.5 2 2 77.88 77.88 2;3 1.0496E-05 24559 TMT1-6 113.93 97.673 138.41 219.67 176.2 129.32 178.51 142.01 131 218 181 131 181 138 4 4 4 4 4 4 69138 13797 1559 13638 21167;21168;21169;21170 27574;27575;27576;27577 27575 4 MLAQQAVK Unmodified 887.48987 0.48987281 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 8 0 1 43.627 43.627 2 0.0077636 11064 TMT1-7 102.72 58.584 153.77 188.28 146.2 139.07 162.2 238.42 145 189 152 138 169 228 1 1 1 1 1 1 12141 13798 479 13639 21171 27578 27578 1 MLDAAVIK Unmodified 859.48372 0.48372479 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 0 7 0 1 57.355 57.355 2 0.0049816 16429 TMT1-6 75.213 6.7912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13799 2568 13640 21172 27579 27579 1 MLDAEDIVGTARPDEK Oxidation (M) 1774.8407 0.84072875 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 1 3.75 0.433 1 3 53.497 53.497 3;4 0.0012691 16324 TMT1-2 66.674 53.825 560.2 816.03 735.51 616.21 704.23 964.89 530 814 753 616 732 924 4 4 4 4 4 4 141710 13800 672 13641 21173;21174;21175;21176 27580;27581;27582;27583 27580 124 4 MLDAEDIVGTARPDEK Unmodified 1758.8458 0.84581413 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4 0.816 1 1 1 57.811 57.811 3 9.7349E-36 17366 TMT1-3 199.39 163.07 2983.4 3917.3 3455.5 2605.6 3410.4 4725.3 2818 3925 3532 2631 3530 4524 6 6 6 6 6 6 518290 13801 672 13641 21177;21178;21179 27584;27585;27586;27587;27588;27589 27586 6 MLDAEDIVNTARPDEK Oxidation (M) 1831.8622 0.86219247 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 1 0 1 4 0 1 53.291 53.291 4 1.8916E-05 15585 TMT1-3 88.507 63.301 107.98 168.67 104.12 70.909 142.18 181.43 102 167 109 73 145 174 1 1 1 1 1 1 10270 13802 195 13642 21180 27590 27590 24 1 MLDAEDIVNTARPDEK Unmodified 1815.8673 0.86727785 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 1 4.5 0.5 2 2 58.395 58.395 3;4 2.105E-11 17561 TMT1-3 118.47 97.531 728.36 974.19 652.09 556.67 589.22 982.03 687 972 683 555 620 937 4 4 4 4 4 4 132950 13803 195 13642 21181;21182;21183;21184 27591;27592;27593;27594 27591 4 MLDEENI Unmodified 862.37423 0.37423392 353 O95379-3;O95379-2;O95379;O95379-4 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes no 0 0 0 0 0 2 0 1 60.074 60.074 2 0.010013 18871 TMT1-1 109.88 81.242 38.253 51.358 19.553 21.92 51.071 36.919 36 51 22 22 51 36 1 1 1 1 1 1 6314.4 13804 353 13643 21185 27595 27595 1 MLDFFTIFSK Unmodified 1247.626 0.62603194 562 P08240-2;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 0 0 9 0 1 92.788 92.788 3 0.0049911 28439 TMT1-8 66.056 34.121 7.2329 30.012 21.305 14.858 14.216 23.046 7 29 22 15 15 22 1 1 1 1 1 1 1585.4 13805 562 13644 21186 27596 27596 1 MLDGDVTDVVEAK Unmodified 1390.665 0.66499622 933 P29122-2;P29122-8;P29122;P29122-7;P29122-6;P29122-5;P29122-4;P29122-3 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 4 0 1 64.099 64.099 3 0.00050847 19830 TMT1-3 62.042 38.806 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13806 933 13645 21187 27597 27597 1 MLDGTVK Unmodified 762.39458 0.39457544 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 46.575 46.575 2 0.0055444 12796 TMT1-5 134.06 64.624 2431.3 3377.7 2568.3 2082.5 2592.5 3839.3 2296 3369 2658 2090 2696 3671 3 3 3 3 3 3 544330 13807 3010 13646 21188;21189 27598;27599;27600 27600 3 MLDQTLLDLNEM Oxidation (M) 1450.6684 0.66836704 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 1 0 0 4 0 2 82.063 82.063 2;3 0.0010645 26863 TMT1-3 105.86 80.646 31.637 58.86 43 44.865 35.321 38.434 30 58 45 44 37 37 2 2 2 2 2 2 20217 13808 519;520 13647 21190;21191 27601;27602 27602 82 2 MLDQTLLDLNEM Unmodified 1434.6735 0.67345241 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 4.33 0.471 2 1 90.226 90.226 2;3 5.6117E-07 29998 TMT1-3 120.99 100.47 138.34 136.94 97.086 97.967 88.55 191.49 130 139 102 95 95 182 3 4 4 2 3 4 81651 13809 519;520 13647 21192;21193;21194 27603;27604;27605;27606 27605 4 MLEEIMK Unmodified 892.43981 0.43981107 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5.5 0.5 1 1 62.267 62.267 2 0.0079653 18813 TMT1-4 121.52 87.723 1129.4 1891.6 1182.9 1058 1366.7 2494.9 1068 1868 1247 1056 1435 2377 4 4 4 4 4 4 184040 13810 439 13648 21195;21196 27607;27608;27609;27610 27607 4 MLEENTNILK Unmodified 1203.6169 0.61692381 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 5.5 0.5 1 1 56.89 56.89 2 2.5496E-09 16690 TMT1-4 170.85 100.9 214.74 281.98 278.54 216.91 253.33 282.72 203 283 283 218 261 272 2 2 2 2 2 2 27893 13811 2788 13649 21197;21198 27611;27612 27611 2 MLEILEGK Unmodified 931.50485 0.50485417 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 6 0 1 68.738 68.738 2 0.015601 21529 TMT1-5 92.439 37.89 61.484 63.812 71.933 65.427 70.749 75.799 58 65 73 65 73 73 1 1 1 1 1 1 8102.4 13812 1501 13650 21199 27613 27613 1 MLFDYLADK Unmodified 1114.5369 0.53688258 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 7 0 1 76.137 76.137 2 0.00081671 23797 TMT1-6 128.36 75.879 69.13 63.672 49.433 35.483 48.835 83.886 65 65 51 36 51 80 1 1 1 1 1 1 6736.5 13813 1353 13651 21200 27614 27614 1 MLFKDDYPSSPPK Unmodified 1523.733 0.7330162 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 1 8 0 1 54.493 54.493 4 1.8019E-08 15387 TMT1-7 123.84 107.89 231.54 237.51 197.74 169.94 159.05 227.85 218 241 204 169 167 218 1 1 1 1 1 1 14238 13814 1480 13652 21201 27615 27615 1 MLFYSFFK Unmodified 1081.5307 0.53067499 2983 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 0 0 9 0 1 82.119 82.119 3 0.0028441 24355 TMT1-8 79.469 40.164 30.934 36.218 0 39.111 12.588 38.017 29 36 0 36 15 36 1 1 0 1 1 1 3691.9 13815 2983 13653 21202 27616 27616 1 MLGAVEGPR Acetyl (Protein N-term) 970.4906 0.49060109 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 1 0 0 0 3 0 1 57.623 57.623 2 0.00033565 18298 TMT1-2 60.91 35.016 0 7.3339 6.8237 6.9653 14.835 15.567 0 7 7 7 15 15 0 1 1 1 1 1 3760.2 13816 1746 13654 21203 27617 27617 1 MLGPEGGEGFVVK Acetyl (N-term) 1360.6697 0.66968766 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 1 0 0 0 0 4 0 1 74.792 74.792 2 0.00058389 23979 TMT1-3 95.81 70.593 37.962 74.294 48.971 35.057 72.952 52.284 36 73 51 36 73 51 1 1 1 1 1 1 25418 13817 1271 13655 21204 27618 27618 1 MLGQMTDQVADLR Oxidation (M) 1492.7014 0.7013985 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 4.67 0.471 1 2 53.688 53.688 2;3 1.7785E-06 16178 TMT1-3 119.43 90.631 162.39 156.52 165.81 129.27 214.37 194.29 153 160 168 131 217 188 3 3 3 3 3 3 38467 13818 776 13656 21205;21206;21207 27619;27620;27621 27619 142;143 3 MLGQMTDQVADLR Unmodified 1476.7065 0.70648388 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.75 1.48 1 1 1 1 61.872 61.872 2;3 8.6401E-17 18588 TMT1-4 178.65 129.29 299.95 442.9 428.18 323.4 393.22 483.4 284 442 435 326 406 464 4 4 4 4 4 4 167610 13819 776 13656 21208;21209;21210;21211 27622;27623;27624;27625;27626 27623 5 MLHDYIGDKDFK Unmodified 1480.7021 0.70205043 1324 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 1 7 0 1 52.767 52.767 4 0.0093909 14657 TMT1-6 61.641 56.586 99.03 168.25 165.34 106.89 127.19 143.48 94 167 167 109 131 138 1 1 1 1 1 1 7711.9 13820 1324 13657 21212 27627 27627 1 MLISILTER Unmodified 1074.6107 0.61071622 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 9 0 1 73.074 73.074 2 0.0013182 20887 TMT1-8 125.31 71.56 130.6 151.18 103.96 95.291 66.738 152.67 123 152 109 94 73 145 1 1 1 1 1 1 13037 13821 670 13658 21213 27628 27628 1 MLISSIK Unmodified 790.46226 0.46226107 935 P29218;P29218-3;P29218-2 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 0 0 9 0 1 56.841 56.841 2 0.0017049 14474 TMT1-8 117.93 45.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13822 935 13659 21214 27629 27629 1 MLLADQGQSWKEEVVTVETWQEGSLK Oxidation (M) 3006.4645 0.4644525 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 1 0 1 6.5 0.5 1 1 77.025 77.025 4 4.0877E-22 24792 TMT1-5 112.74 95.937 176.4 237.93 267.56 162.76 203.58 280.94 167 239 268 167 211 269 3 3 3 3 3 3 23311 13823 583 13660 21215;21216 27630;27631;27632 27631 109 3 MLLADQGQSWKEEVVTVETWQEGSLK Unmodified 2990.4695 0.46953788 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 1 6.33 0.471 2 1 80.606 80.606 3;4 4.1387E-37 25546 TMT1-6 141.64 124.28 261.75 317.05 281.95 257.91 212.54 319.06 247 319 290 255 225 305 4 4 4 4 4 4 68412 13824 583 13660 21217;21218;21219 27633;27634;27635;27636;27637 27635 5 MLLCEAVAAVMAK Unmodified 1405.7131 0.71314916 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 86.228 86.228 2 0.0057312 25992 TMT1-8 67.334 43.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13825 1296 13661 21220 27638 27638 1 MLLDIFDENLHPLSK Unmodified 1783.9179 0.91785686 2211 Q8ND76-3;Q8ND76-2;Q8ND76 CCNY Cyclin-Y yes no 0 0 0 0 0 7 0 1 81.584 81.584 3 0.0028391 25876 TMT1-6 62.377 46.239 30.762 28.183 35.812 29.047 27.416 46.122 29 29 36 29 29 44 1 1 1 1 1 1 3741.9 13826 2211 13662 21221 27639 27639 1 MLLDPMGGIVMTNDGNAILR Unmodified 2130.0636 0.063551594 1178 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 0 0 0 8 0 1 82.757 82.757 3 7.8273E-07 26442 TMT1-7 81.643 61.204 15.742 36.772 28.138 21.423 50.288 60.393 15 36 29 22 51 58 1 1 1 1 1 1 5120.4 13827 1178 13663 21222 27640 27640 1 MLLGAEAVGLVK Unmodified 1199.6948 0.6947802 2765 Q9NW15-2;Q9NW15;Q9NW15-5 ANO10 Anoctamin-10 yes no 0 0 0 0 0 8 0 1 71.492 71.492 2 3.4803E-05 22085 TMT1-7 112.36 53.681 30.603 51.486 42.754 36.157 34.161 53.391 29 51 44 36 36 51 1 1 1 1 1 1 3950.7 13828 2765 13664 21223 27641 27641 1 MLLLEILHEIK Unmodified 1350.7945 0.79449425 2413 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 0 0 9 0 1 85.173 85.173 3 0.00017873 25557 TMT1-8 91.937 52.919 53.882 72.706 79.707 49.82 62.321 98.426 51 73 80 51 65 94 1 1 1 1 1 1 9399.4 13829 2413 13665 21224 27642 27642 1 MLLSLPEK Unmodified 929.52559 0.52558961 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 8 0 1 64.358 64.358 3 0.010142 19257 TMT1-7 73.931 24.098 37.929 81.758 48.137 43.736 79.076 75.562 36 80 51 44 80 73 1 1 1 1 1 1 4126.6 13830 2162 13666 21225 27643 27643 1 MLLVDELR Unmodified 987.5423 0.54230231 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 6 0 1 63.834 63.834 2 0.0058545 19580 TMT1-5 113.14 57.045 114.84 190.1 194.39 127.98 192.41 195.98 109 189 196 131 196 189 1 1 1 1 1 1 34094 13831 774 13667 21226 27644 27644 1 MLLYTEVTR Unmodified 1124.59 0.58998078 1217;972 P50395;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 7.5 0.5 1 1 58.375 58.375 2 0.00011577 16773 TMT1-6 149.94 107.96 454.25 614.31 499.6 463.42 567.62 639.39 429 614 517 461 584 615 3 3 3 3 3 3 91385 13832 1217;972 13668 21227;21228 27645;27646;27647 27645 3 MLMPDDFK Unmodified 995.44562 0.44562473 1153 P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha yes yes 0 0 0 0 0 6 0 1 63.378 63.378 2 0.0049687 19425 TMT1-5 75.243 37.157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13833 1153 13669 21229 27648 27648 1 MLPDKDCR Unmodified 1033.4685 0.46848544 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 6 0 1 37.708 37.708 3 0.027095 9306 TMT1-5 66.692 22.958 3747.3 5534.6 4442.4 3884.1 4718 7154.7 3543 5509 4590 3877 4916 6838 2 2 2 2 2 2 422770 13834 865 13670 21230 27649;27650 27650 2 MLPLGSEPALNELLLR Oxidation (M) 1780.9757 0.97570609 1922 Q2TAC2-2;Q2TAC2 CCDC57 Coiled-coil domain-containing protein 57 yes no 0 0 1 0 0 4 0 1 41.448 41.448 3 0.011132 10843 TMT1-3 54.44 9.7297 408.84 674.72 506.19 409.42 570.4 539.11 387 668 524 412 581 521 1 1 1 1 1 1 231860 13835 1922 13671 21231 27651 27651 271 1 MLPLSLLK Unmodified 913.56706 0.56706049 3022 Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 0 0 0 0 0 9 0 1 74.453 74.453 2 0.02323 21472 TMT1-8 75.692 42.05 77.339 85.787 93.693 55.629 115.97 81.971 73 87 94 58 116 80 1 1 1 1 1 1 9691 13836 3022 13672 21232 27652 27652 1 MLPLSLLK Acetyl (Protein N-term) 955.57763 0.57762518 3022 Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 0 1 0 0 0 9 0 1 93.847 93.847 2 0.0039525 28807 TMT1-8 54.549 34.267 39.354 36.252 27.652 30.351 42.035 75.553 37 37 29 30 44 72 2 2 2 2 2 2 3054 13837 3022 13672 21233 27653;27654 27653 2 MLPSFVR Unmodified 848.45784 0.4578444 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 9 0 1 56.965 56.965 2 0.012222 14548 TMT1-8 113.85 61.942 285.93 367.92 323.7 269.61 330.09 413.78 270 369 332 270 341 397 2 2 2 2 2 2 29456 13838 787 13673 21234 27655;27656 27656 2 MLPTFVR Unmodified 862.47349 0.47349446 787;1275 P19367-4;P19367-2;P19367;P19367-3;Q2TB90;Q2TB90-3;Q2TB90-2;P52790 HK1;HKDC1;HK3 Hexokinase-1;Putative hexokinase HKDC1;Hexokinase-3 no no 0 0 0 0 0 9 0 1 57.206 57.206 2 0.012222 14576 TMT1-8 113.85 45.956 199.92 297.6 230.94 148.93 183.06 287.93 189 296 237 152 191 275 1 1 1 1 1 1 38635 13839 787;1275 13674 21235 27657 27657 1 MLPTIIADNAGYDSADLVAQLR Unmodified 2346.1889 0.18894634 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 6 0 1 83.465 83.465 3 4.2078E-37 27341 TMT1-5 151.58 138.91 46.372 95.887 59.922 99.242 54.295 52.817 44 94 65 95 58 51 2 2 2 2 2 2 23519 13840 1504 13675 21236 27658;27659 27659 2 MLQEDELR Unmodified 1032.491 0.49099502 1520 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 0 2.5 0.5 1 1 31.89 31.89 3 0.013401 7757 TMT1-1 69.198 11.03 106.72 129.37 168.41 113.77 158.3 111.68 101 131 168 116 160 109 3 3 3 3 3 3 21034 13841 1520 13676 21237;21238 27660;27661;27662 27660 3 MLQEDELRDAVLLVFANK Unmodified 2103.1034 0.1034258 1520 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 1 8 0 2 87.67 87.67 3;4 1.0046E-06 28252 TMT1-7 90.714 81.55 91.805 185.75 102.42 87.755 65.472 199.61 87 182 109 87 73 189 2 2 2 2 2 2 20683 13842 1520 13677 21239;21240 27663;27664 27664 2 MLQHIDYR Unmodified 1074.528 0.52804923 709 P14678-2;P63162;P14678;P63162-2;P14678-3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 0 6 0 1 40.129 40.129 3 0.00024916 10211 TMT1-5 143.28 118.29 46.461 64.837 71.214 81.894 69.223 98.229 44 65 73 80 73 94 1 1 1 1 1 1 12164 13843 709 13678 21241 27665 27665 1 MLQSIIK Unmodified 831.48881 0.48881017 1335 P56378 MP68 6.8 kDa mitochondrial proteolipid yes yes 0 0 0 0 0 9 0 1 58.978 58.978 2 0.013302 15312 TMT1-8 109.86 71.624 184.27 220.05 223.04 165.31 208.7 280.8 174 222 226 167 216 269 1 1 1 1 1 1 29887 13844 1335 13679 21242 27666 27666 1 MLQTELK Unmodified 861.46299 0.46298935 3070 yes no 0 0 0 0 0 6 0 1 53.655 53.655 2 0.0243 15602 TMT1-5 94.262 27.227 154.26 149.71 96.415 94.032 157.56 159.67 145 152 102 94 160 154 1 1 1 1 1 1 12333 + 13845 3070 13680 21243 27667 27667 1 MLQTLYDYFWWER Oxidation (M) 1865.8447 0.84469192 2408 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 1 0 0 8 0 1 84.947 84.947 3 0.0073842 27214 TMT1-7 43.316 26.097 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13846 2408 13681 21244 27668 27668 291 1 MLQVASQASR Unmodified 1089.5601 0.56007764 2350 Q969T9 WBP2 WW domain-binding protein 2 yes yes 0 0 0 0 0 8 0 1 42.467 42.467 2 0.00013665 10595 TMT1-7 135.55 79.535 68.846 86.627 77.707 74.262 47.602 67.932 65 87 80 73 51 65 1 1 1 1 1 1 17093 13847 2350 13682 21245 27669 27669 1 MLSAGVTEAVLK Unmodified 1217.669 0.66895938 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 7 0 1 63.509 63.509 2 3.065E-31 18859 TMT1-6 179.57 131.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13848 1264 13683 21246 27670 27670 1 MLSEVLR Unmodified 846.46332 0.4633237 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 6.5 0.5 1 1 54.702 54.702 2 0.0082628 15961 TMT1-5 117.93 43.519 284.59 399.64 341.42 266.36 330.64 402.04 269 399 350 268 341 386 2 2 2 2 2 2 72249 13849 740 13684 21247;21248 27671;27672 27671 2 MLSLDFLDDVRR Unmodified 1478.7551 0.75514863 1484 P67812-4;P67812;P67812-3 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 1 7 0 1 71.289 71.289 3 0.0016523 21881 TMT1-6 78.043 56.579 85.098 62.22 71.915 65.305 77.315 97.998 80 65 73 65 80 94 1 1 1 1 1 1 16522 13850 1484 13685 21249 27673 27673 1 MLTELEK Unmodified 862.447 0.44700494 486 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 0 4.25 1.92 1 2 1 55.451 55.451 2;3 0.0020536 16079 TMT1-4 107.43 49.87 786.27 1253.3 781.48 839.94 982.93 1291.7 743 1240 830 828 1019 1238 5 5 5 5 5 5 361800 13851 486 13687 21250;21251;21252;21253 27674;27675;27676;27677;27678 27675 5 MLTFNPHK Unmodified 986.50077 0.50077184 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 0 9 0 1 47.06 47.06 3 0.0018969 10588 TMT1-8 85.212 54.138 99.825 107.86 82.872 96.243 82.928 106.37 94 109 87 94 87 102 1 1 1 1 1 1 6154.1 13852 930 13688 21254 27679 27679 1 MLTFNPHKR Unmodified 1142.6019 0.60188287 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 1 9 0 1 39.131 39.131 4 0.0076496 7830 TMT1-8 58.676 30.164 130.05 180.97 170.26 145.79 135.7 270.09 123 181 174 145 145 257 1 1 1 1 1 1 3424.8 13853 930 13689 21255 27680 27680 1 MLTGPVYSQSTALTHK Unmodified 1732.8818 0.8818057 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 8 0 1 52.287 52.287 3 0.00050372 14547 TMT1-7 70.96 51.637 30.499 74.942 40.281 60.081 48.51 60.444 29 73 44 58 51 58 1 1 1 1 1 1 7131.1 13854 2116 13690 21256 27681 27681 1 MLTLASK Acetyl (N-term) 804.44153 0.44152563 2348 Q969M7-6;Q969M7;Q969M7-2;Q969M7-5;Q969M7-4;Q969M7-3 UBE2F NEDD8-conjugating enzyme UBE2F yes no 1 0 0 0 0 7 0 1 67.612 67.612 2 0.0088884 20476 TMT1-6 53.166 17.286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13855 2348 13691 21257 27682 27682 1 MLTNHTFIK Unmodified 1103.5798 0.57975044 1037 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 0 0 0 0 0 9 0 1 47.557 47.557 3 0.012918 10815 TMT1-8 56.729 30.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13856 1037 13692 21258 27683 27683 1 MLVDDIGDVTITNDGATILK Unmodified 2103.0769 0.076936277 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 5 0 2 79.463 79.463 3;4 8.2748E-18 25555 TMT1-4 123.19 81.932 255.05 279.89 177.2 231.2 221.6 334.8 240 282 190 225 233 320 4 4 4 4 4 4 33500 13857 770 13693 21259;21260 27684;27685;27686;27687 27686 4 MLVDLAK Unmodified 788.44661 0.44661101 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 7.5 0.5 1 1 60.263 60.263 2 0.0081007 17548 TMT1-6 119.89 24.267 886 1669.9 978.69 989.83 1279.8 1462.3 839 1641 1042 981 1315 1406 2 2 2 2 2 2 137570 13858 516 13694 21261;21262 27688;27689 27688 2 MLVEAIMLLTATAPGR Unmodified 1685.9208 0.92083375 2537 Q9BTY7 HGH1 Protein HGH1 homolog yes yes 0 0 0 0 0 9 0 1 101.97 101.97 3 0.0028426 31833 TMT1-8 53.995 32.364 15.982 22.33 0 7.3668 15.11 7.0308 15 22 0 7 15 7 1 1 0 1 1 1 708.47 13859 2537 13695 21263 27690 27690 1 MLVELSK Unmodified 818.45718 0.45717569 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 7.5 0.5 1 1 58.221 58.221 2 0.016353 16799 TMT1-6 100.45 9.4098 322.11 421.8 328.07 337.71 414.68 509.44 304 422 342 334 428 489 3 3 3 3 3 3 57345 13860 1233 13696 21264;21265 27691;27692;27693 27692 3 MLVIEQCK Unmodified 1019.5144 0.514373 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 7 0 1 53.871 53.871 3 0.015134 15043 TMT1-6 66.682 46.92 37.957 65.647 57.066 35.008 49.92 52.942 36 65 58 36 51 51 1 1 1 1 1 1 4360.6 13861 1161 13697 21266 27694 27694 1 MLVNENEVK Unmodified 1074.5379 0.53794521 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 5 0 1 48.434 48.434 2 0.0020738 13398 TMT1-4 106.88 64.016 61.349 103.37 61.223 58.28 77.894 90.519 58 102 65 58 80 87 1 1 1 1 1 1 5794.7 13862 3011 13698 21267 27695 27695 1 MLVSGAGDIK Unmodified 989.52157 0.52156686 1068 P40227;P40227-2;Q92526-2;Q92526;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 0 7 0 1 52.662 52.662 2 3.3958E-14 14541 TMT1-6 185.6 108.54 215.47 244.07 188.13 208.56 112.15 293.15 203 246 197 203 126 278 1 1 1 1 1 1 44623 13863 1068 13699 21268 27696 27696 1 MLVTFDEELRPLPVSVR Unmodified 2000.0765 0.076482767 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 1 7 0 1 70.873 70.873 3 0.00046224 21742 TMT1-6 72.583 50.385 84.867 92.875 84.862 73.447 68.255 137.7 80 94 87 73 73 131 1 1 1 1 1 1 12841 13864 1683 13700 21269 27697 27697 1 MLVVLLQANR Unmodified 1155.6798 0.67979884 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 9 0 1 71.108 71.108 2 0.0060715 20108 TMT1-8 89.046 58.476 115.35 160.23 133.54 125.36 117.45 158.68 109 160 138 124 123 152 2 2 2 2 2 2 6572.5 13865 578 13701 21270 27698;27699 27699 2 MLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELK Unmodified 3794.9149 0.91490333 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 1 7 0 1 93.2 93.2 5 3.1074E-12 30209 TMT1-6 78.909 69.198 30.709 28.036 44.836 20.994 20.2 53.79 29 29 44 22 22 51 1 1 1 1 1 1 7153.3 13866 578 13702 21271 27700 27700 1 MLVVLLQGTR Unmodified 1128.6689 0.6688998 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 72.231 72.231 2 0.038411 20602 TMT1-8 64.297 44.82 54.075 80.796 40.514 44.298 73.333 28.821 51 80 44 44 73 29 1 1 1 1 1 1 11469 13867 555 13703 21272 27701 27701 1 MLYLDFGGK Unmodified 1042.5158 0.5157532 1740 Q13884 SNTB1 Beta-1-syntrophin yes yes 0 0 0 0 0 9 0 1 70.46 70.46 2 0.0035641 19857 TMT1-8 88.948 50.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13868 1740 13704 21273 27702 27702 1 MLYPGSVYLLQK Unmodified 1410.7581 0.75810874 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 9 0 2 71.79 71.79 2;3 1.3236E-05 20336 TMT1-8 99.568 67.314 38.201 59.27 55.647 75.44 54.877 67.724 36 59 58 73 58 65 1 2 2 2 2 2 24267 13869 378 13705 21274;21275 27703;27704 27703 2 MMDYLQGSGETPQTDVR Unmodified 1926.8452 0.8451622 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 4 0 1 57.665 57.665 2 0.00014616 17297 TMT1-3 60.178 46.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13870 1792 13706 21276 27705 27705 1 MMEVAAADVK Unmodified 1063.5042 0.50420224 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5 0 1 53.738 53.738 2 0.00021942 15501 TMT1-4 128.27 83.92 77.272 109.34 84.99 49.24 76.441 144.93 73 109 87 51 80 138 1 1 1 1 1 1 10800 13871 2434 13707 21277 27706 27706 1 MMITSQDVLHSWAVPTLGLK Unmodified 2226.1541 0.15408116 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 9 0 1 78.655 78.655 4 1.1199E-13 23053 TMT1-8 95.814 71.527 68.605 148.55 65.748 89.331 97.889 136.85 65 145 73 87 102 131 1 1 1 1 1 1 19534 13872 390 13708 21278 27707 27707 1 MMLGTEGGEGFVVK Acetyl (Protein N-term) 1495.7051 0.70508689 983 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 1 0 0 0 5 0 1 79.322 79.322 2 1.9156E-05 25503 TMT1-4 50.149 24.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13873 983 13709 21279 27708 27708 1 MMPTPVILLK Acetyl (Protein N-term) 1183.6709 0.67087364 2496 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 0 1 0 0 0 9 0 1 90.197 90.197 2 0.002915 27480 TMT1-8 69.954 45.618 61.458 79.929 62.646 57.889 94.167 74.065 58 80 65 58 95 72 2 2 2 2 2 2 13990 13874 2496 13710 21280 27709;27710 27709 2 MMVAGFK Unmodified 782.3819 0.38190226 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 1 55.497 55.497 2 0.0086921 13955 TMT1-8 143.22 82.219 159.83 251.75 334.81 142.21 211.39 416.1 152 252 330 152 222 396 1 1 1 1 1 1 21577 13875 1545 13711 21281 27711 27711 1 MNAFSGVMMLQLLEK Unmodified 1710.8507 0.85070527 2746 Q9NTX5-6;Q9NTX5-2;Q9NTX5;Q9NTX5-5 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 0 9 0 1 89.441 89.441 3 0.00070155 27222 TMT1-8 62.055 42.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13876 2746 13712 21282 27712 27712 1 MNDLTIIQTTQGFCR Unmodified 1796.8549 0.85493903 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 7 0 1 65.785 65.785 3 7.1485E-08 19740 TMT1-6 110.84 94.159 99.956 69.369 93.489 79.757 112.22 158.83 94 73 94 80 116 152 1 1 1 1 1 1 14269 13877 2407 13713 21283 27713 27713 1 MNEFLENFEK Unmodified 1299.5805 0.58053831 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 0 6 0 1 70.3 70.3 3 0.00058819 22197 TMT1-5 97.452 81.198 61.114 94.082 108.47 78.834 113.84 112.95 58 94 109 80 116 109 1 1 1 1 1 1 20331 13878 2855 13714 21284 27714 27714 1 MNESDAWFEEK Unmodified 1384.5605 0.56053115 235 O60749-2;O60749 SNX2 Sorting nexin-2 yes no 0 0 0 0 0 4 0 1 59.849 59.849 3 0.0011152 18191 TMT1-3 85.522 63.69 46.555 65.096 55.292 74.605 100.43 82.414 44 65 58 73 102 80 1 1 1 1 1 1 9644.5 13879 235 13715 21285 27715 27715 1 MNEVISLWK Unmodified 1118.5794 0.57941609 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 9 0 1 71.512 71.512 2 0.011406 20297 TMT1-8 90.827 43.004 46.515 73.619 54.797 74.254 62.517 60.044 44 73 58 72 65 58 1 1 1 1 1 1 7827.5 13880 1737 13716 21286 27716 27716 1 MNFANVFIGANPLAVDLLEK Unmodified 2175.1398 0.13981131 1890 Q16539;Q16539-2 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 9 0 1 94.977 94.977 3 7.4401E-13 29271 TMT1-8 89.028 66.874 77.413 97.865 71.028 38.08 74.781 86.344 73 98 73 40 76 83 2 2 2 2 2 2 16940 13881 1890 13717 21287 27717;27718 27718 2 MNIFGGFR Unmodified 940.45891 0.45890703 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 9 0 1 63.518 63.518 2 0.0071651 17100 TMT1-8 116.3 50.161 84.683 123.66 89.58 96.113 68.569 98.247 80 123 94 94 73 94 1 1 1 1 1 1 10104 13882 2019 13718 21288 27719 27719 1 MNLASEPQEVLHIGSAHNR Unmodified 2102.0327 0.032720472 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6 0.816 1 1 1 49.562 49.562 4 1.3173E-14 13907 TMT1-5 116.51 94.292 484.2 634.68 496.81 398.11 562.03 706.71 457 635 513 401 578 678 3 3 3 3 3 3 104720 13883 41 13719 21289;21290;21291 27720;27721;27722 27721 3 MNLFQSVTSALDNSLAK Unmodified 1837.9244 0.9243988 836 P21953-2;P21953 BCKDHB 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial yes no 0 0 0 0 0 9 0 1 87.4 87.4 3 0.0036026 26482 TMT1-8 49.721 26.485 53.861 87.757 70.524 65.674 62.105 83.508 51 87 73 65 65 80 1 1 1 1 1 1 3189 13884 836 13720 21292 27723 27723 1 MNLSAIQDR Unmodified 1046.5179 0.51787847 2762;2370 Q9NVJ2;Q96BM9 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A no no 0 0 0 0 0 6 0 1 47.236 47.236 2 1.0601E-05 13033 TMT1-5 157.59 96.68 355.46 468.52 454.35 350.83 363.15 408.58 336 470 462 352 376 393 2 2 2 2 2 2 41618 13885 2762;2370 13721 21293 27724;27725 27725 2 MNLSEEVDLEDYVARPDK Unmodified 2121.9888 0.98884955 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 1 4 0 1 65.515 65.515 4 4.4598E-06 20349 TMT1-3 86.44 63.111 46.555 73.732 47.878 59.377 61.882 98.438 44 73 51 58 65 94 1 1 1 1 1 1 11017 13886 1118 13722 21294 27726 27726 1 MNPEYDYLFK Acetyl (Protein N-term);Oxidation (M) 1376.5959 0.59585402 2616 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 0 1 1 0 0 3.5 0.5 1 1 72.679 72.679 2 0.00018772 24171 TMT1-2 107.47 79.067 99.624 131.04 97.037 111.39 104.24 135.61 94 131 102 109 109 130 2 2 2 2 2 2 24526 13887 2616 13724 21295;21296 27727;27728 27727 300 2 MNPEYDYLFK Acetyl (N-term) 1360.6009 0.6009394 2616 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 1 0 0 0 0 4.5 0.5 1 1 79.974 79.974 2 0.0035443 26065 TMT1-3 95.099 75.312 345.75 388.97 351.09 226.8 311.19 351.43 326 393 357 232 319 338 3 3 3 3 3 3 114280 13888 2616 13724 21297;21298 27729;27730;27731 27730 3 MNPQSAFFQGK Unmodified 1253.5863 0.58629239 844 P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 0 9 0 1 56.876 56.876 2 0.0015776 14513 TMT1-8 89.403 38.127 46.347 88.264 70.531 65.673 62.105 83.508 44 87 73 65 65 80 1 1 1 1 1 1 8442.1 13889 844 13725 21299 27732 27732 1 MNSEEEDEVWQVIIGAR Unmodified 2003.9259 0.92585536 2720 Q9NR28-2;Q9NR28-3;Q9NR28 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 0 4 0 1 81.027 81.027 3 0.0019691 26450 TMT1-3 58.688 53.686 23.252 36.254 28.84 5.5188 21.975 22.825 22 36 29 7 22 22 1 1 1 1 1 1 4256.7 13890 2720 13726 21300 27733 27733 1 MNTTLSSLK Unmodified 993.51648 0.51648149 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 8 0 1 51.992 51.992 2 0.0020476 14413 TMT1-7 107.45 85.948 108.48 91.271 85.566 57.139 61.435 114.44 102 94 87 58 65 109 1 1 1 1 1 1 6163.4 13891 1142 13727 21301 27734 27734 1 MNTVFHIWK Unmodified 1174.5957 0.59573486 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 0 9 0 1 60.668 60.668 3 0.0070572 15974 TMT1-8 63.283 36.029 708.91 1082.5 1123.8 803.47 1081.9 1289.9 672 1080 1135 815 1112 1239 1 1 1 1 1 1 17361 13892 2855 13728 21302 27735 27735 1 MNVDHEVNLLVEEIHR Oxidation (M);Acetyl (N-term) 2003.9735 0.97347426 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 1 0 1 0 0 3 0 1 64.737 64.737 3 6.5937E-05 21012 TMT1-2 42.818 32.761 23.289 28.802 28.909 14 35.73 37.356 22 29 29 15 36 36 1 1 1 1 1 1 19154 13893 2818 13729 21303 27736 27736 315 1 MNVDHEVNLLVEEIHR Acetyl (Protein N-term) 1987.9786 0.97855964 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 1 0 0 0 3 0 1 71.131 71.131 3 1.1599E-29 23590 TMT1-2 77.562 57.957 46.713 59.06 33.842 54.173 34.343 54.452 44 59 37 52 37 52 2 2 2 2 2 2 91984 13894 2818 13729 21304 27737;27738 27738 2 MNVFDTDLQALSR Unmodified 1508.7293 0.72932781 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 6.67 0.471 1 2 70.296 70.296 2;3 2.0052E-11 22166 TMT1-5 152.31 116.4 291.74 453.16 357.07 352.25 363.38 460.8 276 450 371 348 378 442 5 5 5 5 5 5 79648 13895 2344 13730 21305;21306;21307 27739;27740;27741;27742;27743 27741 5 MNVFDTELK Oxidation (M) 1111.522 0.52196079 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 1 0 0 5 0 1 55.129 55.129 3 0.026789 15898 TMT1-4 66.19 54.476 68.89 86.75 70.136 74.02 84.5 90.331 65 87 73 73 87 87 1 1 1 1 1 1 8426.7 13896 748 13731 21308 27744 27744 136 1 MNVFDTELK Unmodified 1095.527 0.52704617 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 6 0 1 62.333 62.333 2 0.00047924 18991 TMT1-5 136.63 58.3 168.66 304.73 248.66 279.26 170.91 314.92 160 301 259 272 186 300 1 1 1 1 1 1 36351 13897 748 13731 21309 27745 27745 1 MNVLADALK Unmodified 973.52665 0.52665224 1418 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 0 7 0 1 64.537 64.537 2 0.00042617 19270 TMT1-6 138.11 106.74 122.95 143.75 133.84 139.8 162.56 165.92 116 145 138 138 167 160 1 1 1 1 1 1 15692 13898 1418 13732 21310 27746 27746 1 MNYSDAIVWLK Unmodified 1338.6642 0.66420836 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 8 0 1 73.828 73.828 3 0.0017223 22952 TMT1-7 79.23 49.295 53.637 134.62 68.415 49.917 92.937 90.09 51 131 73 51 94 87 1 1 1 1 1 1 10291 13899 203 13733 21311 27747 27747 1 MPCAEDYLSVVLNQLCVLHEK Unmodified 2517.2066 0.20658702 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 8.33 0.471 2 1 89.094 89.094 3;4 2.8279E-13 26971 TMT1-8 89.011 61.516 147.55 149.42 140.96 164.03 204.88 241.47 139 152 146 160 211 232 5 5 5 4 5 5 30387 + 13900 28 13734 21312;21313;21314 27748;27749;27750;27751;27752 27751 5 MPCQLHQVIVAR Unmodified 1450.7537 0.75370884 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 9 0 1 45.203 45.203 3 0.00043212 9952 TMT1-8 81.799 57.455 46.481 88.637 47.668 44.044 64.163 52.535 44 87 51 44 65 51 1 1 1 1 1 1 9342.2 13901 761 13735 21315 27753 27753 1 MPCTEDYLSLILNR Unmodified 1723.8273 0.82732729 29 CON__P02769 yes yes 0 0 0 0 0 7 0 1 80.542 80.542 2 1.9349E-06 25520 TMT1-6 92.866 75.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13902 29 13736 21316 27754 27754 1 MPDLHLK Unmodified 852.45276 0.45275902 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 7 0 1 50.664 50.664 3 0.02515 13742 TMT1-6 63.486 20.459 246.79 361.41 234.59 194.3 315.97 347.03 233 359 246 196 322 334 2 2 2 2 2 2 24680 13903 1632 13737 21317 27755;27756 27755 2 MPDVHFK Unmodified 872.42146 0.42145889 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 7 0 1 48.185 48.185 3 0.031536 12781 TMT1-6 58.981 23.881 169.66 220.1 152.2 154.07 159.01 250.24 160 220 160 152 167 239 1 1 1 1 1 1 14976 13904 1632 13738 21318 27757 27757 1 MPEDESTPEKR Unmodified 1317.5871 0.58708025 1051;1394 P37235;P84074;P61601 HPCAL1;HPCA;NCALD Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta no no 0 0 0 0 1 3 0 1 34.083 34.083 3 0.00063145 8962 TMT1-2 95.094 74.711 92.047 115.19 121.53 93.829 88.792 152.04 87 116 123 94 94 145 1 1 1 1 1 1 10612 13905 1051;1394 13739 21319 27758 27758 1 MPEMHFK Unmodified 918.40918 0.40917964 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 7.5 0.5 1 1 47.827 47.827 3 0.012616 12729 TMT1-6 76.899 43.778 326.95 498.76 351.51 314.62 347.87 506.02 309 495 367 313 363 484 2 2 2 2 2 2 25193 13906 1632 13740 21320;21321 27759;27760 27759 2 MPFAWAPISLSSFFNVSTLER Unmodified 2399.1984 0.19838882 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 9 0 1 101.46 101.46 3 0.024037 31610 TMT1-8 35.015 24.818 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13907 2223 13741 21322 27761 27761 1 MPFLSISSPK Unmodified 1105.5842 0.58416712 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 9 0 1 66.901 66.901 3 0.0021702 18441 TMT1-8 73.067 41.694 37.813 88.99 61.522 73.593 76.384 114.01 36 87 65 72 80 109 1 1 1 1 1 1 8910.7 13908 1632 13742 21323 27762 27762 1 MPGTDAPGIPAALAFGPQVSDTLLDCR Unmodified 2769.3466 0.34658597 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 84.723 84.723 3 3.2881E-06 27146 TMT1-6 47.919 39.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13909 1762 13743 21324 27763 27763 1 MPIIPFLL Unmodified 942.56125 0.56124683 2790 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 0 0 0 9 0 1 105.73 105.73 2 0.0085649 33053 TMT1-8 93.595 75.56 30.652 51.622 34.391 29.397 13.291 30.535 29 51 36 29 15 29 1 1 1 1 1 1 18311 13910 2790 13744 21325 27764 27764 1 MPILISK Unmodified 800.483 0.48299651 1740 Q13884;Q13884-2;Q13425-2;Q13425;Q13424-2;Q13424 SNTB1;SNTB2;SNTA1 Beta-1-syntrophin;Beta-2-syntrophin;Alpha-1-syntrophin yes no 0 0 0 0 0 9 0 1 61.023 61.023 2 0.023685 16114 TMT1-8 92.925 29.439 91.951 146.22 111.38 109.84 141.45 150.53 87 145 116 109 145 145 1 1 1 1 1 1 13463 13911 1740 13745 21326 27765 27765 1 MPLFEHYTR Unmodified 1192.5699 0.56991404 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 7 0 1 49.16 49.16 3 0.00829 13198 TMT1-6 68.893 58.37 38.08 50.878 48.949 67.079 55.774 52.774 36 51 51 65 58 51 1 1 1 1 1 1 3679.8 13912 932 13746 21327 27766 27766 1 MPLIGLGTWK Unmodified 1114.6209 0.62088698 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 9 0 2 74.939 74.939 2 2.382E-06 21718 TMT1-8 147.51 0 307.77 342.7 280.68 246.64 350.86 418.52 290 346 290 247 360 402 2 2 2 2 2 2 50585 13913 705 13747 21328;21329 27767;27768 27768 2 MPLLLIDGK Unmodified 998.58344 0.58343884 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 9 0 1 72.727 72.727 2 0.01149 20734 TMT1-8 90.709 43.003 61.162 62.915 126.9 47.287 47.486 107.38 58 65 123 51 51 102 1 1 1 1 1 1 5078.6 13914 1669 13748 21330 27769 27769 1 MPLLNWVALKPSQITGTVFTELNDEK Unmodified 2943.5416 0.54158061 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 1 9 0 1 90.793 90.793 4 0.00012709 27676 TMT1-8 49.25 35.52 77.764 55.671 47.709 83.976 33.01 53.424 73 58 51 80 37 51 2 2 2 2 2 2 7458.2 13915 356 13749 21331 27770;27771 27770 2 MPMGLSTGIISDSQIK Unmodified 1676.8477 0.84772838 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 8 0 1 68.76 68.76 3 8.9839E-09 20986 TMT1-7 110.55 88.538 77.297 124.53 67.839 73.758 105.68 144.09 73 123 73 73 109 138 1 1 1 1 1 1 21351 13916 666 13750 21332 27772 27772 1 MPPSHQLDHSK Unmodified 1275.603 0.60300508 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 6 0 1 30.173 30.173 4 0.036823 6259 TMT1-5 43.544 17.426 107.65 167.77 158.83 82.616 159.99 104.17 102 167 160 87 160 102 1 1 1 1 1 1 6101.1 13917 1616 13751 21333 27773 27773 1 MPRVHNIK Oxidation (M) 1009.5491 0.54911902 1956 Q5FWF4-3;Q5FWF4 ZRANB3 DNA annealing helicase and endonuclease ZRANB3;DNA annealing helicase ZRANB3;Endonuclease ZRANB3 yes no 0 0 1 0 1 6 0 1 41.91 41.91 3 0.0073862 10941 TMT1-5 51.995 31.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13918 1956 13753 21334 27774 27774 274 1 MPSLPSYK Unmodified 921.46299 0.46298935 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 8.5 0.5 1 1 54.862 54.862 2;3 0.0086459 13634 TMT1-8 93.429 26.435 254.27 375.93 227.16 195.01 301.83 331.44 240 373 240 196 308 319 2 2 2 2 2 2 55896 13919 937 13754 21335;21336 27775;27776 27776 2 MPWFHGK Unmodified 901.42688 0.42687862 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 9 0 1 50.065 50.065 3 0.004743 11770 TMT1-8 88.591 46.482 99.448 169.41 94.065 126.47 125.78 158.44 94 167 102 123 131 152 1 1 1 1 1 1 15126 13920 1115 13755 21337 27777 27777 1 MQALQLAQK Unmodified 1029.5641 0.56410038 3098 yes no 0 0 0 0 0 6 0 1 46.928 46.928 2 0.0020188 12911 TMT1-5 108.09 72.468 99.311 137.73 144.01 92.315 98.044 128.32 94 138 145 94 102 123 1 1 1 1 1 1 41746 + 13921 3098 13756 21338 27778 27778 1 MQDLDEDATLTQLATAWVSLATGGEK Unmodified 2763.3273 0.32729032 95 O14579;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 0 7.33 0.471 2 1 107.04 107.04 3;4 5.1042E-12 33788 TMT1-6 90.097 83.592 25.4 32.876 31.321 27.003 34.122 36.336 24 33 32 27 35 35 5 5 5 5 5 5 4100.3 13922 95 13757 21339;21340;21341 27779;27780;27781;27782;27783 27780 5 MQDQLQAQDFSK Unmodified 1437.6558 0.65582851 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 0 5 0 1 52.445 52.445 3 0.00056297 14941 TMT1-4 83.499 62.888 183.88 261.09 252.34 229.4 253.12 272.07 174 261 258 228 261 262 1 1 1 1 1 1 51100 13923 2802 13758 21342 27784 27784 1 MQEAMTQEVSDVFSDTTTPIK Unmodified 2357.0767 0.076678281 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.5 0.5 2 2 76.598 76.598 3;4 7.9582E-14 24402 TMT1-4 105.06 91.609 868.84 1070.3 764.83 698.04 793.03 1193.7 819 1073 799 694 828 1141 6 6 6 6 6 6 209490 13924 776 13759 21343;21344;21345;21346 27785;27786;27787;27788;27789;27790 27788 6 MQEAMTQEVSDVFSDTTTPIK Oxidation (M) 2373.0716 0.071592903 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 5 0 1 70.046 70.046 4 0.00017836 21830 TMT1-4 61.511 46.256 46.525 81.202 46.684 76.123 46.966 83.94 44 80 51 73 51 80 1 1 1 1 1 1 13457 13925 776 13759 21347 27791 27791 144 1 MQGLEAHK Unmodified 912.44874 0.44873627 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 36.28 36.28 3 0.0027578 8706 TMT1-5 62.823 33.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13926 1280 13760 21348 27792 27792 1 MQHLIAR Oxidation (M) 883.46981 0.46980607 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 0 8 0 2 28.767 28.767 3 0.0058441 4076 TMT1-7 105.2 74.639 111.31 145.01 105.28 76.31 83.845 106.34 105 145 109 77 87 102 2 2 2 2 2 2 25768 13927 706;707 13761 21349;21350 27793;27794 27793 134 2 MQHLIAR Unmodified 867.47489 0.47489144 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 8 0 1 33.416 33.416 3 3.517E-06 7036 TMT1-7 164.89 124.82 438.79 688.61 509.49 434.72 435.27 663.42 415 683 529 433 457 634 2 2 2 2 2 2 177750 13928 706;707 13761 21351 27795;27796 27795 2 MQKEITALAPSTMK Unmodified 1547.8051 0.80513529 1357;1479;1488 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle no no 0 0 0 0 1 8 0 1 54.738 54.738 3 0.00011228 15482 TMT1-7 88.73 49.725 160.8 249.05 174.33 129.32 184.91 199.4 152 247 181 131 189 192 1 1 1 1 1 1 17911 13929 1357;1479;1488 13762 21352 27797 27797 1 MQLLEIITTEK Unmodified 1317.7214 0.72138888 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 7.67 0.471 1 2 78.279 78.279 2;3 0.00033087 24741 TMT1-7 96.745 64.415 184.18 239.26 220.37 175.02 166.18 226.58 174 240 225 175 174 217 3 3 3 3 3 3 51582 13930 1076 13763 21353;21354;21355 27798;27799;27800 27800 3 MQLSGEGAK Unmodified 919.44332 0.44331654 1575 Q02978 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 0 0 0 0 0 6 0 1 40.828 40.828 2 0.0099141 10517 TMT1-5 89.047 25.568 92.132 139.17 86.852 135.61 127.19 105.1 87 138 94 131 131 102 1 1 1 1 1 1 9432.8 13931 1575 13764 21356 27801 27801 1 MQNDAGEFVDLYVPR Acetyl (Protein N-term) 1794.8247 0.82468476 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 1 0 0 0 3 0 1 81.05 81.05 2 1.174E-22 27230 TMT1-2 84.479 77.024 0 0 15.931 6.7015 0 7.462 0 0 15 7 0 7 0 0 1 1 0 1 8161 13932 1476 13765 21357 27802;27803 27802 2 MQNDTAENETTEKEEK Unmodified 1895.8055 0.80546546 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 2 0 1 36.999 36.999 3 1.6733E-05 9777 TMT1-1 73.788 57.103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13933 1597 13766 21358 27804 27804 1 MQNPQILAALQER Unmodified 1510.7926 0.79259677 1316 P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 0 0 0 0 0 7 0 2 60.983 60.983 2;3 1.0183E-05 17848 TMT1-6 114.02 58.649 162.65 164.78 115.8 171.89 198.78 164.89 153 167 124 167 203 160 2 2 2 2 2 2 49662 13934 1316 13767 21359;21360 27805;27806 27805 2 MQQNIQELEEQLEEEESAR Unmodified 2332.0489 0.048883626 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0.632 1 3 1 73.432 73.432 3;4 2.833E-40 23782 TMT1-1 178.99 165.8 142.7 213.98 181.53 162.59 136.22 219.97 135 213 187 161 141 210 7 7 7 7 5 7 179940 13935 1019 13768 21361;21362;21363;21364;21365 27807;27808;27809;27810;27811;27812;27813 27809 7 MQQNIQELEEQLEEEESAR Oxidation (M) 2348.0438 0.043798248 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 2 0 1 65.299 65.299 3 2.3616E-23 20903 TMT1-1 138.97 131.86 39.375 36.311 24.041 38.468 28.726 25.83 37 37 26 37 30 25 2 2 2 2 2 2 28308 13936 1019 13768 21366 27814;27815 27815 186 2 MQSLTLDVLGTSELLLAK Unmodified 1931.0649 0.064915028 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 8 0 2 94.379 94.379 3;4 9.3537E-05 30687 TMT1-7 72.819 53.986 53.847 80.164 79.266 49.679 71.217 83.248 51 80 80 51 73 80 2 2 2 2 2 2 7382.4 13937 156 13769 21367;21368 27816;27817 27817 2 MQTQQVNTLK Unmodified 1189.6125 0.61250714 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 7 0 2 42.873 42.873 2;3 0.00073503 10678 TMT1-6 81.017 30.139 161.3 241.8 96.671 133.48 209.46 179.51 152 239 109 131 212 174 1 1 1 1 1 1 8352.2 13938 251 13770 21369;21370 27818;27819 27819 2 MQVDPQK Unmodified 844.41129 0.41128813 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 5 0 1 39.329 39.329 2 0.0038791 9781 TMT1-4 85.212 40.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13939 1537 13771 21371 27820 27820 1 MQVEHPEK Unmodified 996.46987 0.46986564 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 0 4 0 1 32.564 32.564 3 0.025637 7402 TMT1-3 58.676 35.248 92.641 54.239 73.371 42.516 63.976 60.002 87 58 73 44 65 58 1 1 1 1 1 1 3053.1 13940 2198 13772 21372 27821 27821 1 MREDYDSVEQDGDEPGPQR Unmodified 2221.9182 0.9182038 3035 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 0 1 2 0 1 39.481 39.481 3 2.6735E-13 10781 TMT1-1 112.91 94.199 15.985 14.784 5.8968 15.929 6.0837 14.75 15 15 7 15 7 14 1 1 1 1 1 1 5750.2 13941 3035 13773 21373 27822 27822 1 MSAEINEIIR Unmodified 1174.6016 0.6016081 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 5.17 1.95 1 2 1 1 1 58.621 58.621 2;3 1.1118E-20 17174 TMT1-4 198.72 177.19 1812.7 2252.5 2173.9 1784.6 2076.9 2620.7 1712 2266 2216 1787 2150 2514 8 8 8 8 8 8 683170 13942 776 13774 21374;21375;21376;21377;21378;21379 27823;27824;27825;27826;27827;27828;27829;27830 27827 8 MSAGLGFSLEGGK Unmodified 1252.6122 0.61217279 1743 Q14005-3;Q14005-2;Q14005 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 0 8 0 1 62.946 62.946 3 0.0015674 18689 TMT1-7 72.496 55.379 38.08 58.431 42.659 28.087 56.761 76.198 36 58 44 29 58 73 1 1 1 1 1 1 11255 13943 1743 13775 21380 27831 27831 1 MSASILLSK Unmodified 948.5314 0.53140327 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 9 0 1 60.574 60.574 2 0.016644 15962 TMT1-8 82.645 41.197 184.68 210.43 160.69 144.75 221.23 217.55 174 212 167 145 225 210 1 1 1 1 1 1 10475 13944 2642 13776 21381 27832 27832 1 MSATFIGNSTAIQELFK Unmodified 1856.9342 0.93423521 1493 P68371 TUBB4B Tubulin beta-4B chain no no 0 0 0 0 0 8 0 1 86.832 86.832 3 1.0728E-05 27897 TMT1-7 84.859 2.2695 77.003 147.45 97.918 72.082 99.488 113.36 73 145 102 73 102 109 1 1 1 1 1 1 12331 13945 1493 13777 21382 27833 27833 1 MSCMDNK Unmodified 884.31904 0.31904401 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.5 0.5 1 1 37.67 37.67 2 0.0080149 9107 TMT1-4 120.92 78.813 253.03 369.06 261.27 312.91 259.79 423.25 239 367 276 305 276 404 2 2 2 2 2 2 27778 13946 831 13778 21383;21384 27834;27835 27834 2 MSCTVNLLNFYK Unmodified 1488.7105 0.71050662 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 9 0 1 71.939 71.939 3 8.5445E-05 20440 TMT1-8 85.288 52.554 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13947 2305 13779 21385 27836 27836 1 MSDGLFLQK Unmodified 1037.5216 0.52156686 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0 1 60.996 60.996 2 3.0771E-05 17870 TMT1-6 124.23 69.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13948 1213 13780 21386 27837 27837 1 MSDILAEGITIVEDINK Unmodified 1859.955 0.95503023 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 5.33 0.471 2 1 99.294 99.294 3;4 2.177E-19 32861 TMT1-4 139.6 119.22 119.63 144.79 148.89 92.473 132.28 166.79 113 146 150 95 136 160 6 6 6 6 6 6 9172.5 13949 1878 13781 21387;21388;21389 27838;27839;27840;27841;27842;27843 27840 6 MSDILAEGITIVEDINKR Unmodified 2016.0561 0.056141256 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 1 6 0 1 90.823 90.823 3 6.1574E-19 29894 TMT1-5 130.87 117.7 76.762 139.22 145.45 84.833 84.5 106.32 73 138 146 87 88 102 2 2 2 2 2 2 19621 13950 1878 13782 21390 27844;27845 27844 2 MSEQLNDLTYDMEILQPLLEQGASLR Unmodified 3006.4678 0.46782332 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 5.8 0.748 2 2 1 99.297 99.297 3;4 2.6714E-11 32831 TMT1-4 84.822 72.625 46.552 52.907 36.833 44.351 36.385 38.603 44 53 39 43 38 37 5 6 6 5 5 4 22756 13951 1684 13783 21391;21392;21393;21394;21395 27846;27847;27848;27849;27850;27851;27852;27853 27848 8 MSHALEEIK Oxidation (M);Acetyl (N-term) 1114.5329 0.53285983 1991 Q5VWX1 KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 2 yes yes 1 0 1 0 0 2 0 1 78.228 78.228 2 0.021325 25537 TMT1-1 42.109 8.0311 98.92 191.69 163.94 106.83 134.78 135.8 94 189 167 109 138 131 1 1 1 1 1 1 102030 13952 1991 13784 21396 27854 27854 275 1 MSLFYAEATPMLK Unmodified 1500.7357 0.73565874 2751 Q9NUQ9;Q9NUQ9-2;Q9H0Q0 FAM49B;FAM49A Protein FAM49B;Protein FAM49A yes no 0 0 0 0 0 9 0 1 74.857 74.857 3 0.00011955 21605 TMT1-8 89.959 67.727 68.902 94.338 61.733 58.136 83.911 128.72 65 94 65 58 87 123 1 1 1 1 1 1 12095 13953 2751 13785 21397 27855 27855 1 MSNYDTDLFVPYFEAIQK Unmodified 2180.0136 0.013607739 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 84.943 84.943 3 0.0014009 27248 TMT1-6 56.036 45.84 53.927 72.831 72.087 50.684 40.55 91.585 51 73 73 51 44 87 1 1 1 1 1 1 14355 13954 1184 13786 21398 27856 27856 1 MSPDEGQEELEEVQAELK Unmodified 2059.9256 0.92558059 2685 Q9HC07-2;Q9HC07 TMEM165 Transmembrane protein 165 yes no 0 0 0 0 0 2 0 1 71.641 71.641 3 3.2096E-06 23181 TMT1-1 87.24 79.151 15.982 22.33 0 31.439 13.71 15.599 15 22 0 29 15 15 1 1 0 1 1 1 2981.3 13955 2685 13787 21399 27857 27857 1 MSQYLDSLK Unmodified 1083.527 0.52704617 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 0 7 0 1 61.076 61.076 2 0.0007226 17899 TMT1-6 129.85 102.74 122.11 242.88 190.42 145.15 105.66 262.42 116 239 196 145 116 249 1 1 1 1 1 1 14270 13956 2867 13788 21400 27858 27858 1 MSQYLESMQIGDTIEFR Unmodified 2046.9391 0.93906259 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 6 0 2 75.881 75.881 2;3 8.0897E-07 24351 TMT1-5 97.45 92.156 23.368 21.469 21.737 14.837 13.96 30.516 22 22 22 15 15 29 1 1 1 1 1 1 7450.5 13957 388 13789 21401;21402 27859;27860 27859 2 MSSELFTLTYGALVTQLCK Unmodified 2161.0799 0.079913165 185 O43617 TRAPPC3 Trafficking protein particle complex subunit 3 yes yes 0 0 0 0 0 9 0 1 92.594 92.594 3 6.3081E-10 28354 TMT1-8 85.362 56.782 15.852 21.969 22.154 5.6514 36.114 37.345 15 22 22 7 36 36 1 1 1 1 1 1 3235.9 13958 185 13790 21403 27861 27861 1 MSSFGDFVALSDVCDVPTAK Unmodified 2144.9758 0.97584202 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 6 0 1 78.494 78.494 4 0.00037949 25353 TMT1-5 56.149 40.026 46.701 50.394 43.099 28.05 57.312 60.193 44 51 44 29 58 58 1 1 1 1 1 1 6674.4 13959 981 13791 21404 27862 27862 1 MSSTFIGNSTAIQELFK Unmodified 1872.9291 0.92914983 1713 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 0 0 9 0 1 75.089 75.089 3 1.385E-07 21665 TMT1-8 81.594 0 46.112 87.609 110.64 40.702 42.329 53.158 44 87 109 44 44 51 1 1 1 1 1 1 12458 13960 1713 13792 21405 27863 27863 1 MSSYAFFVQTCR Oxidation (M) 1511.6537 0.65372002 588;900 P09429;B2RPK0;P26583 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 no no 0 0 1 0 0 8 0 1 55.627 55.627 3 0.0001904 15830 TMT1-7 70.412 57.431 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13961 588;900 13793 21406 27864 27864 111 1 MSSYAFFVQTCR Unmodified 1495.6588 0.6588054 588;900 P09429;B2RPK0;P26583 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 no no 0 0 0 0 0 9 0 2 62.678 62.678 2;3 3.8355E-17 16749 TMT1-8 177.57 46.149 192.52 169.8 140.96 131.49 174.96 242.32 181 174 146 131 181 232 2 2 2 2 2 2 117390 13962 588;900 13793 21407;21408 27865;27866 27865 2 MSTEEIIQR Unmodified 1105.5438 0.54375887 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 0 4 0 1 44.483 44.483 2 0.0006734 12091 TMT1-3 131.22 95.785 108.34 83.339 115.06 110.17 112.4 112.99 102 87 116 109 116 109 1 1 1 1 1 1 15457 13963 769 13794 21409 27867 27867 1 MSVDNLATVIGVNLIR Unmodified 1713.9447 0.94474031 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 9 0 1 83.883 83.883 3 0.04343 25012 TMT1-8 33.697 17.444 23.328 21.355 28.692 28.89 58.336 29.249 22 22 29 29 58 29 1 1 1 1 1 1 8867.3 13964 1095 13795 21410 27868 27868 1 MSVIWDK Unmodified 877.43677 0.4367746 1892 Q16555-2;Q16555;Q14195;Q14195-2 DPYSL2;DPYSL3 Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 0 8 0 1 60.767 60.767 3 0.011954 17852 TMT1-7 77.741 16.981 68.991 94.586 46.518 59.3 70.262 98.199 65 94 51 58 73 94 1 1 1 1 1 1 5445.7 13965 1892 13796 21411 27869 27869 1 MSVQPTVSLGGFEITPPVVLR Unmodified 2226.2082 0.20822522 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 9 0 2 81.935 81.935 2;3 3.5414E-19 24399 TMT1-8 110.95 93.67 23.283 21.231 36.288 28.579 50.765 36.927 22 22 36 29 51 36 1 1 1 1 1 1 57601 13966 517 13797 21412;21413 27870;27871 27870 2 MSVQPTVSLGGFEITPPVVLR Oxidation (M) 2242.2031 0.20313984 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 1 0 0 9 0 1 78.171 78.171 3 0.0049694 22867 TMT1-8 43.768 17.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13967 517 13797 21414 27872 27872 80 1 MTALAQDFAVGLGPR Unmodified 1545.7973 0.79734779 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 8 0 1 72.61 72.61 3 1.3428E-10 22511 TMT1-7 99.927 88.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13968 1219 13798 21415 27873 27873 1 MTCVDVNECDELNNR Unmodified 1867.7499 0.74988161 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 2 0.816 1 1 1 48.943 48.943 3 5.2353E-23 14542 TMT1-1 176.4 165.91 132.1 179.46 188.83 119.32 147.36 179.15 125 180 190 122 152 172 4 4 4 4 4 4 46208 13969 1797 13799 21416;21417;21418 27874;27875;27876;27877 27875 4 MTDEEIMEK Unmodified 1124.473 0.47296169 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 3 0 1 50.972 50.972 2 0.0097686 15659 TMT1-2 89.247 9.0085 23.307 36.408 19.434 46.433 26.616 46.144 22 36 22 44 29 44 1 1 1 1 1 1 5311.3 13970 1680 13800 21419 27878 27878 1 MTDLLEEGITVVENIYK Unmodified 1965.9969 0.99689504 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 5.5 0.5 1 1 102.75 102.75 3 0.00064287 33359 TMT1-4 65.716 55.377 19.117 18.637 17.346 20.549 14.745 30.493 18 19 18 20 16 29 3 3 3 3 3 3 2362.5 13971 48 13801 21420;21421 27879;27880;27881 27879 3 MTDQEAIQDLWQWR Oxidation (M) 1834.8308 0.83083277 517 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 0 0 5.5 0.5 1 1 72.293 72.293 3 3.1278E-20 22765 TMT1-4 167.21 149.93 84.584 132.02 99.187 63.526 85.479 106.29 80 131 102 65 88 102 2 2 2 2 2 2 19595 13972 517 13802 21422;21423 27882;27883 27882 81 2 MTDQEAIQDLWQWR Unmodified 1818.8359 0.83591814 517 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 0 5.67 0.471 1 2 77.081 77.081 2;3 1.5153E-14 24853 TMT1-5 130.66 121.61 155.03 197.37 106.55 142.32 114.8 213.12 146 197 116 138 123 203 3 3 3 3 3 3 89749 13973 517 13802 21424;21425;21426 27884;27885;27886 27886 3 MTDQVNYQAMK Unmodified 1327.5901 0.59005713 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 6 0 1 49.397 49.397 3 0.0012896 13909 TMT1-5 57.175 41.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13974 1684 13803 21427 27887 27887 1 MTEEEVEMLVAGHEDSNGCINYEELVR Unmodified 3152.3737 0.37366494 1356 P60660-2 MYL6 Myosin light polypeptide 6 yes yes 0 0 0 0 0 3.75 0.433 1 3 73.964 73.964 3;4 2.0547E-09 24511 TMT1-2 78.837 71.319 195.26 200.63 194.97 170.71 126.82 230.9 184 204 197 169 132 220 7 7 6 7 5 7 39656 13975 1356 13804 21428;21429;21430;21431 27888;27889;27890;27891;27892;27893;27894 27889 7 MTEEEVEMLVAGHEDSNGCINYEELVR Oxidation (M) 3168.3686 0.36857956 1356 P60660-2 MYL6 Myosin light polypeptide 6 yes yes 0 0 1 0 0 4 0 1 71.739 71.739 4 0.00082601 22808 TMT1-3 45.957 43.791 15.859 21.986 21.066 30.049 20.847 22.857 15 22 22 29 22 22 1 1 1 1 1 1 2964.6 13976 1356 13804 21432 27895 27895 213 1 MTGLVDEAIDTK Unmodified 1291.633 0.63296781 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.25 1.48 1 1 1 1 63.782 63.782 2;3 2.1397E-09 19376 TMT1-4 147.63 107.71 2066.3 3056.2 2141.7 1809.9 2165.9 2981.6 1952 3037 2233 1810 2248 2855 6 6 6 6 6 6 453450 13977 776 13805 21433;21434;21435;21436 27896;27897;27898;27899;27900;27901;27902 27901 7 MTGLVDEAIDTK Oxidation (M) 1307.6279 0.62788243 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 4.5 0.5 1 1 53.851 53.851 2;3 0.0065295 15771 TMT1-3 72.089 48.238 276.66 300.58 315.86 221.44 300.91 322.94 261 305 319 225 308 311 2 2 2 2 2 2 55914 13978 776 13805 21437;21438 27903;27904 27903 145 2 MTGSEFDFEEMKR Unmodified 1605.6803 0.68032871 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 1 5 0 1 56.083 56.083 3 5.1182E-08 16401 TMT1-4 98.167 90.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13979 1217 13806 21439 27905 27905 1 MTHNLLLNYGLYR Unmodified 1606.829 0.82898227 1717 Q13547;Q92769-3;Q92769 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 yes no 0 0 0 0 0 9 0 1 58.014 58.014 3 2.8401E-06 14947 TMT1-8 101.64 77.92 46.378 80.795 71.664 50.295 62.556 90.957 44 80 73 51 65 87 1 1 1 1 1 1 8522.7 13980 1717 13807 21440 27906 27906 1 MTILQTYFR Unmodified 1171.606 0.6059652 266 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 0 0 0 0 0 9 0 1 68.821 68.821 2 0.00066611 19257 TMT1-8 131.44 85.014 153.85 188.53 131.34 132.31 162.14 188.32 145 189 138 131 167 181 2 2 2 2 2 2 27606 13981 266 13808 21441 27907;27908 27908 2 MTKEELNALK Unmodified 1175.622 0.62200919 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4;Q32MZ4-4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 1 7 0 1 49.777 49.777 3 0.0018511 13443 TMT1-6 91.03 7.72 192.11 243.13 147.43 227.37 170.41 246.71 181 243 160 219 181 236 1 1 1 1 1 1 13099 13982 1924 13809 21442 27909 27909 1 MTLGMIWTIILR Oxidation (M) 1462.804 0.80401308 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 1 0 0 9 0 1 91.073 91.073 2 0.0013286 27856 TMT1-8 89.171 46.088 15.607 45.03 43.897 20.902 28.083 37.575 15 44 44 22 29 36 1 1 1 1 1 1 6417.3 13983 672;195;1022 13810 21443 27910 27910 25 1 MTNTNLAVVFGPNLLWAK Unmodified 1988.0554 0.055353395 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 9 0 2 86.169 86.169 3;4 6.8219E-11 25932 TMT1-8 103.66 76.631 108.15 154.03 88.017 111.94 103.67 151.61 102 153 95 109 109 145 3 3 3 3 3 3 32733 13984 1616 13811 21444;21445 27911;27912;27913 27912 3 MTNYDVEHTIK Unmodified 1349.6286 0.62855113 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 5 0 1 45.565 45.565 2 0.0049118 12254 TMT1-4 59.84 39.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13985 555 13812 21446 27914 27914 1 MTNYDVEHTIKK Unmodified 1477.7235 0.72351415 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 6 0 1 43.688 43.688 4 0.00034063 11621 TMT1-5 87.498 66.269 417.49 759.59 422.88 463.9 320.33 894.83 395 747 454 453 356 848 1 1 1 1 1 1 52733 13986 555 13813 21447 27915 27915 1 MTPGNLGIVFGPTLLRPR Unmodified 1938.0873 0.087322225 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 1 9 0 1 70.895 70.895 3 0.013632 20038 TMT1-8 44.382 28.626 37.955 65.641 57.402 27.483 42.13 76.616 36 65 58 29 44 73 1 1 1 1 1 1 5273.6 13987 2309 13814 21448 27916 27916 1 MTPSNIAIVLGPNLLWAR Unmodified 1965.087 0.086987874 2006 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 0 9 0 1 86.611 86.611 3 1.328E-09 26162 TMT1-8 96.096 75.511 23.333 28.927 21.301 14.587 28.63 30.097 22 29 22 15 29 29 1 1 1 1 1 1 5865.8 13988 2006 13815 21449 27917 27917 1 MTSGVTGDWK Unmodified 1080.491 0.49099502 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 7 0 1 51.41 51.41 2 0.0018052 14077 TMT1-6 101.38 58.134 68.943 86.898 61.094 82.483 69.965 75.822 65 87 65 80 73 73 1 1 1 1 1 1 5708.9 13989 929 13816 21450 27918 27918 1 MTSILEAVPQVK Unmodified 1314.7217 0.72172323 1047 P36959 GMPR GMP reductase 1 yes yes 0 0 0 0 0 8 0 1 69.358 69.358 3 0.00039285 21212 TMT1-7 87.363 43.735 68.793 86.479 86.753 41.432 79.182 75.559 65 87 87 44 80 73 1 1 1 1 1 1 15335 13990 1047 13817 21451 27919 27919 1 MTSLNLATIFGPNLLHK Unmodified 1869.0182 0.018239607 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 9 0 2 78.898 78.898 3;4 3.3761E-07 23116 TMT1-8 75.97 56.132 100.49 115.29 144.65 108.12 127.65 128.54 95 117 145 109 131 124 2 2 2 2 2 2 21576 13991 161 13818 21452;21453 27920;27921 27921 2 MTVCLETEK Unmodified 1109.5097 0.50968155 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 5 0 1 51.138 51.138 3 0.0077282 14469 TMT1-4 70.056 47.527 68.73 102.49 83.682 88.798 69.418 83.299 65 102 87 87 73 80 1 1 1 1 1 1 8153.8 13992 1279 13819 21454 27922 27922 1 MTVDESGQLISCSMDDTVR Oxidation (M) 2158.9181 0.91806915 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 1 0 0 3 0 2 55.759 55.759 3 0.00014289 17562 TMT1-2 67.928 59.936 38.283 35.253 28.097 21.839 28.297 30.107 36 36 29 22 29 29 1 1 1 1 1 1 6019.2 13993 250 13820 21455;21456 27923;27924 27923 28;29 2 MTVDESGQLISCSMDDTVR Unmodified 2142.9232 0.92315453 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 3.5 0.5 1 1 63.093 63.093 3 2.5857E-23 19344 TMT1-3 132.74 116.43 116.53 145.33 128.91 79.024 97.043 175.25 110 146 131 81 102 167 3 3 3 3 3 3 98207 13994 250 13820 21457;21458 27925;27926;27927 27926 3 MTVPKEMPEK Acetyl (Protein N-term);Oxidation (M) 1246.5937 0.59374553 1532 P98198-2;P98198 ATP8B2 Phospholipid-transporting ATPase ID yes no 0 1 1 0 1 2 0 1 35.164 35.164 3 0.032834 9044 TMT1-1 43.282 18.428 287.84 445.91 297.54 192.85 367.98 357.27 272 442 309 199 372 345 1 1 1 1 1 1 37612 13995 1532 13821 21459 27928 27928 246 1 MVAAATNNLCEAANAAVQGHASQEK Oxidation (M) 2571.1806 0.18058328 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6.5 0.5 1 1 51.02 51.02 4 1.2959E-14 13945 TMT1-6 100.39 83.239 185.4 247.12 190.55 129.37 130.81 221.19 175 247 196 131 138 211 2 2 2 2 2 2 42457 13996 3010 13822 21460;21461 27929;27930 27930 334 2 MVAAATNNLCEAANAAVQGHASQEK Unmodified 2555.1857 0.18566865 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.25 0.829 1 1 2 57.304 57.304 3;4 2.0476E-52 16498 TMT1-7 177.5 169.7 867.79 1123.7 1076 805.66 884.33 1406.4 820 1128 1094 811 927 1343 7 7 7 7 7 7 291270 13997 3010 13822 21462;21463;21464;21465 27931;27932;27933;27934;27935;27936;27937 27935 7 MVAASIK Unmodified 718.40475 0.40474619 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 8 0 1 45.271 45.271 2 0.0243 11708 TMT1-7 94.262 27.227 161.5 200.25 99.117 134.51 146.84 173.83 152 200 109 131 152 167 1 1 1 1 1 1 11301 13998 1739 13823 21466 27938 27938 1 MVEGYQGLR Unmodified 1051.5121 0.51206481 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 44.959 44.959 2 0.0037514 12013 TMT1-4 69.716 40.614 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13999 1833 13824 21467 27939 27939 1 MVESVFR Unmodified 866.43202 0.43202358 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 50.484 50.484 2 3.685E-12 14248 TMT1-5 180.15 107.53 277.34 376.05 317.84 269.66 287.84 425.65 262 376 327 269 301 407 2 2 2 2 2 2 32617 14000 2085 13825 21468;21469 27940;27941 27940 2 MVFINNIALAQIK Unmodified 1473.8378 0.83775605 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 76.248 76.248 3 1.6634E-06 22097 TMT1-8 105.13 81.898 54.252 33.801 50.566 51.948 41.555 60.642 51 36 51 51 44 58 1 1 1 1 1 1 5632.5 14001 1101 13826 21470 27942 27942 1 MVGCTGK Unmodified 751.33568 0.33568035 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 7 0 1 36.579 36.579 2 0.0069148 8217 TMT1-6 78.616 30.873 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14002 840 13827 21471 27943 27943 1 MVGGIAQIIAAQEEMLR Oxidation (M) 1844.9488 0.94883941 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 7.33 0.745 1 2 3 78.769 78.769 2;3 1.4684E-09 24807 TMT1-6 110.84 102.5 215.82 321.85 243.87 139.82 231.49 290.81 204 320 250 143 237 279 8 8 8 7 8 8 76415 14003 3010 13828 21472;21473;21474;21475;21476;21477 27944;27945;27946;27947;27948;27949;27950;27951 27946 335;336 8 MVGGIAQIIAAQEEMLR Unmodified 1828.9539 0.95392479 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 1.12 1 1 1 1 85.04 85.04 3 1.4576E-35 27311 TMT1-7 184 165.18 270.64 302.18 244.61 264.99 303.5 371.9 255 305 255 261 314 357 7 7 7 7 7 7 192230 14004 3010 13828 21478;21479;21480;21481 27952;27953;27954;27955;27956;27957;27958;27959 27956 8 MVGGIAQIIAAQEEMLRK Unmodified 1957.0489 0.048887808 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 9 0 1 77.905 77.905 3 9.606E-37 22724 TMT1-8 172.57 140.5 254.72 321.04 198.86 175.33 159.57 418.65 240 321 210 174 174 397 2 2 2 2 2 2 44906 14005 3010 13829 21482 27960;27961 27960 2 MVGVPAALDMMLTGR Unmodified 1560.7826 0.78262571 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 9 0 1 83.081 83.081 3 2.1555E-05 24751 TMT1-8 72.898 43.354 15.74 36.767 28.468 14.017 36.242 22.418 15 36 29 15 36 22 1 1 1 1 1 1 3603.9 14006 1076 13830 21483 27962 27962 1 MVINHLEK Unmodified 982.52699 0.52698659 1232 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 7 0 1 43.263 43.263 3 0.00060187 10842 TMT1-6 133.23 69.749 374.5 554.92 428.03 386.06 491.2 653.3 354 552 444 385 508 626 1 1 1 1 1 1 36305 14007 1232 13831 21484 27963 27963 1 MVIPGGIDVHTR Unmodified 1293.6863 0.68634078 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 7.5 0.5 1 1 50.197 50.197 3 5.9141E-11 13587 TMT1-6 160.72 128.96 177.26 162.61 186.71 160.3 183.33 203.7 167 167 189 160 189 196 2 2 2 2 2 2 51757 14008 1892 13832 21485;21486 27964;27965 27964 2 MVLAAAGGVEHQQLLDLAQK Unmodified 2091.1147 0.11465919 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 65.662 65.662 3;4 8.6824E-31 19720 TMT1-7 145.33 118.52 168.48 202.59 185.74 129.07 161.99 196.85 159 204 189 131 167 189 3 3 3 3 3 3 28887 14009 979 13833 21487;21488 27966;27967;27968 27967 3 MVLLEQLFLDHNALR Oxidation (M) 1826.9713 0.97128941 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 1 0 0 8.5 0.5 1 1 72.423 72.423 3 5.9703E-08 22469 TMT1-7 115.09 104.93 92.108 131.54 97.449 102.33 119.81 151.15 87 131 102 101 124 145 2 2 2 2 2 2 21530 14010 1067 13834 21489;21490 27969;27970 27969 203 2 MVLLEQLFLDHNALR Unmodified 1810.9764 0.97637479 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8.5 0.5 1 1 81.314 81.314 3 1.7284E-37 24132 TMT1-8 195.2 146.79 215.04 243.97 259.74 155.69 197.14 234.22 203 247 261 160 203 225 3 3 3 3 3 3 124500 14011 1067 13834 21491;21492 27971;27972;27973;27974 27973 4 MVLSVFSPYWLINK Unmodified 1695.9058 0.90583561 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 1 91.948 91.948 3 5.6646E-05 28109 TMT1-8 82.543 65.601 15.824 29.444 20.648 29.39 57.251 60.194 15 29 22 29 58 58 1 1 1 1 1 1 4845.5 14012 2064 13835 21493 27975 27975 1 MVLVGDVK Unmodified 859.48372 0.48372479 661;1360 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 7 0 1 56.206 56.206 2 0.0045747 15942 TMT1-6 124.08 26.049 230.99 316.92 223.08 198.59 299.03 316.6 218 316 233 199 305 305 1 1 1 1 1 1 41490 14013 661;1360 13836 21494 27976 27976 1 MVMTVFACLMGK Unmodified 1386.6532 0.65319144 690 P13796;P13796-2 LCP1 Plastin-2 no no 0 0 0 0 0 9 0 2 90.501 90.501 2;3 2.792E-13 27572 TMT1-8 166.19 126.27 115.26 230.11 90.664 119.25 113.7 276.05 109 225 102 116 123 262 2 2 2 2 2 2 40147 14014 690 13837 21495;21496 27977;27978 27977 2 MVMTVFACLMGK Oxidation (M) 1402.6481 0.64810606 690 P13796;P13796-2 LCP1 Plastin-2 no no 0 0 1 0 0 9 0 1 81.15 81.15 3 0.0021796 24019 TMT1-8 67.08 37.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14015 690 13837 21497 27979 27979 130 1 MVNDAEK Unmodified 805.364 0.36400359 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4 0 1 36.016 36.016 2 0.0081516 8711 TMT1-3 119.27 43.42 152.93 286.34 203.26 207.8 220.53 214.37 145 282 213 205 227 207 1 1 1 1 1 1 35794 14016 640 13838 21498 27980 27980 1 MVNHFIAEFK Oxidation (M) 1250.6118 0.61177885 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 0 8 0 1 52.391 52.391 3 0.026399 14605 TMT1-7 64.439 59.548 177.17 212 160.62 169.4 189.28 322.93 167 213 168 167 199 308 1 1 1 1 1 1 43070 14017 641 13839 21499 27981 27981 121 1 MVNHFIAEFK Unmodified 1234.6169 0.61686423 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 8.33 0.471 2 1 59.308 59.308 3;4 1.7446E-05 17315 TMT1-7 140.49 109.87 1449 2080.1 1415.5 1570.6 1558.9 2365.7 1368 2069 1495 1541 1637 2261 4 4 4 4 4 4 357510 14018 641 13839 21500;21501;21502 27982;27983;27984;27985;27986 27983 5 MVNSNLASVEELKEIDVEVR Unmodified 2273.1573 0.15731186 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 1 5 0 1 68.242 68.242 4 3.188E-05 21176 TMT1-4 70.414 55.324 54.272 50.047 33.341 52.419 71.091 83.251 51 51 36 51 73 80 1 1 1 1 1 1 5963.8 14019 566 13840 21503 27987 27987 1 MVNYIQMK Unmodified 1025.5038 0.50380831 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 9 0 1 56.751 56.751 2 0.0014224 14432 TMT1-8 144.83 90.284 139.03 173.92 110.18 94.087 111.01 174.85 131 174 116 94 116 167 1 1 1 1 1 1 16298 14020 2013 13841 21504 27988 27988 1 MVPDFYVDSIADLLPALQG Unmodified 2063.0285 0.028529522 12 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 0 0 0 7 0 1 113.26 113.26 3 0.00054324 34166 TMT1-6 57.973 47.185 2.1196 3.0176 1.8807 2.0565 0.92677 3.1716 2 3 2 2 1 3 2 2 2 2 1 2 1299.9 14021 12 13842 21505 27989;27990 27990 2 MVPPVQVSPLIK Unmodified 1306.7683 0.7682795 1337 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 0 9 0 1 66.979 66.979 3 0.031935 18525 TMT1-8 42.809 23.197 77.113 124.01 99.345 71.598 120.69 136.2 73 123 102 73 123 131 1 1 1 1 1 1 6968.7 14022 1337 13843 21506 27991 27991 1 MVSDINNAWGCLEQVEK Oxidation (M) 2007.903 0.90301143 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 0 5.67 0.471 1 2 67.335 67.335 3;4 3.1568E-13 20940 TMT1-5 117.53 91.094 184.87 323.37 213.96 229.93 230.31 296.17 175 319 226 226 240 284 4 4 4 4 4 4 59221 14023 672 13844 21507;21508;21509 27992;27993;27994;27995 27994 125 4 MVSDINNAWGCLEQVEK Unmodified 1991.9081 0.90809681 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 6 0.707 1 2 1 73.816 73.816 3;4 2.4242E-20 23562 TMT1-5 141.86 115.08 407.62 678.7 527.78 381.04 499.81 713.82 386 672 543 386 518 683 4 4 4 4 4 4 332330 14024 672 13844 21510;21511;21512;21513 27996;27997;27998;27999;28000 27998 5 MVSGMYLGELVR Unmodified 1353.6785 0.67847821 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 7.5 0.5 1 1 67.904 67.904 3 0.00049062 20609 TMT1-6 65.179 40.256 38.212 51.245 26.464 36.961 43.05 37.148 36 51 29 36 44 36 1 1 1 1 1 1 6414 14025 787 13845 21514;21515 28001;28002 28001 2 MVSVLPIFR Unmodified 1060.6103 0.61032229 2197 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 0 9 0 1 73.076 73.076 2 0.0095756 20857 TMT1-8 93.374 50.899 61.482 63.806 72.262 58.04 55.677 67.701 58 65 73 58 58 65 1 1 1 1 1 1 12125 14026 2197 13846 21516 28003 28003 1 MVTEEEIQFYVQQFK Unmodified 1917.9183 0.91825079 1008 P34913;P34913-3;P34913-2 EPHX2 Bifunctional epoxide hydrolase 2;Cytosolic epoxide hydrolase 2;Lipid-phosphate phosphatase yes no 0 0 0 0 0 7 0 1 84.066 84.066 3 1.4002E-08 26891 TMT1-6 115.78 95.941 61.463 79.941 61.896 99.001 60.866 75.015 58 80 66 95 65 72 2 2 2 2 2 2 6234.4 14027 1008 13847 21517 28004;28005 28005 2 MVVELLHK Unmodified 967.55247 0.55247306 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 8 0 1 56.465 56.465 3 0.0050915 16137 TMT1-7 84.476 43.489 61.65 49.162 56.533 66.498 62.617 67.503 58 51 58 65 65 65 1 1 1 1 1 1 7352.2 14028 736 13848 21518 28006 28006 1 MVVESAYEVIK Unmodified 1266.653 0.65297497 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 5 0 1 63.624 63.624 2 9.141E-24 19419 TMT1-4 202.36 152.55 333.15 406.98 470.11 471.07 312.55 502.76 315 411 478 462 336 480 2 2 2 2 2 2 65509 14029 527 13849 21519 28007;28008 28008 2 MVVPAALK Unmodified 827.4939 0.49389555 1071 P40429;Q6NVV1 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 0 0 0 9 0 1 55.811 55.811 2 0.00027132 14065 TMT1-8 129.16 68.199 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14030 1071 13850 21520 28009 28009 1 MVVPGLDGAQIPR Unmodified 1351.7282 0.7282056 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 7 0 1 62.809 62.809 2 0.0032131 18569 TMT1-6 78.136 36.157 54.14 57.234 49.518 43.929 64.424 45.066 51 58 51 44 65 44 1 1 1 1 1 1 6026.9 14031 1176 13851 21521 28010 28010 1 MVVPLACLLTPLK Unmodified 1453.8401 0.84006423 1858 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 0 0 9 0 1 86.896 86.896 3 0.00048817 26231 TMT1-8 71.555 42.208 15.847 14.399 29.465 21.762 28.044 37.576 15 15 29 22 29 36 1 1 1 1 1 1 3646.4 14032 1858 13852 21522 28011 28011 1 MVVPVAALFTPLK Unmodified 1384.8152 0.81522969 1857 Q15436 SEC23A Protein transport protein Sec23A yes yes 0 0 0 0 0 9 0 1 85.362 85.362 3 2.2676E-06 25609 TMT1-8 103.34 70.221 84.765 85.038 108.55 86.605 107.21 82.221 80 87 109 87 109 80 2 2 2 2 2 2 11653 14033 1857 13853 21523 28012;28013 28012 2 MVVSDFHVFVR Unmodified 1334.6805 0.68052712 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 8 0 1 60.218 60.218 3 0.032519 17594 TMT1-7 48.701 23.909 222.53 212.09 290.27 216.89 217.11 241.12 210 218 290 218 225 232 2 2 2 2 2 2 13550 14034 2482 13854 21524 28014;28015 28014 2 MVYSLVSVPEGNDISSIFELDPTTLR Unmodified 2881.4419 0.44192614 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 7 0 1 94.297 94.297 3 8.4139E-07 30664 TMT1-6 55.526 33.418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14035 1785 13855 21525 28016 28016 1 MVYWTDITEPSIGR Unmodified 1666.8025 0.80249275 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 7 0 1 71.089 71.089 3 0.00080708 21804 TMT1-6 73.502 56.777 38.2 43.657 34.87 28.521 58.353 29.249 36 44 36 29 58 29 1 1 1 1 1 1 10667 14036 704 13856 21526 28017 28017 1 MWEVLESTTQTK Unmodified 1451.6966 0.6966307 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 68.53 68.53 2 5.1062E-08 20837 TMT1-6 112.94 85.839 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14037 1546 13857 21527 28018 28018 1 MWFQWSEQR Unmodified 1296.571 0.57097667 138 O15260;O15260-2;O15260-3 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 9 0 1 66.851 66.851 2 0.035301 18434 TMT1-8 64.04 32.169 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14038 138 13858 21528 28019 28019 1 MWLSPEEVLVANALWVTER Unmodified 2242.1456 0.14562496 2002 Q66K14-2;Q66K14 TBC1D9B TBC1 domain family member 9B yes no 0 0 0 0 0 8 0 1 97.57 97.57 3 0.00036773 31884 TMT1-7 61.102 44.024 11.619 14.869 18.389 3.0697 10.973 11.413 11 15 18 4 11 11 1 1 1 1 1 1 1483.3 14039 2002 13859 21529 28020 28020 1 MWVQLLIPR Unmodified 1154.6634 0.66342049 1388 P61289;P61289-3;P61289-2 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 0 9 0 1 80.317 80.317 2 0.018318 23733 TMT1-8 78.77 50.597 23.302 36.396 20.168 29.975 27.666 37.587 22 36 22 29 29 36 1 1 1 1 1 1 3246 14040 1388 13860 21530 28021 28021 1 MWYSFDHK Unmodified 1112.475 0.47495102 2138 Q8IVB4 SLC9A9 Sodium/hydrogen exchanger 9 yes yes 0 0 0 0 0 8 0 1 53.786 53.786 3 0.0053516 15103 TMT1-7 53.968 20.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14041 2138 13861 21531 28022 28022 1 MYAPAWVAPEALQK Unmodified 1573.7963 0.79628516 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 4.5 3.5 1 1 69.461 69.461 3 1.1658E-14 21191 TMT1-7 133.32 111.27 609.09 729.15 706.74 669.11 597.7 767.52 575 735 724 661 626 736 3 3 3 3 3 3 279080 14042 1700 13862 21532;21533 28023;28024;28025 28025 3 MYAPAWVAPEALQK Oxidation (M) 1589.7912 0.79119978 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 1 0 0 7.5 0.5 1 1 64.022 64.022 3 0.00019466 19090 TMT1-7 88.021 67.632 442.48 554.78 544.23 490.28 450.91 590.49 418 558 556 486 472 566 3 3 3 3 3 3 77801 14043 1700 13862 21534;21535 28026;28027;28028 28028 264 3 MYEQLCDR Unmodified 1113.4583 0.45831468 2150 Q8IY22-3;Q8IY22-2;Q8IY22 CMIP C-Maf-inducing protein yes no 0 0 0 0 0 3 0 1 43.037 43.037 2 0.021482 12491 TMT1-2 87.913 60.171 46.509 73.603 55.805 51.64 41.313 68.111 44 73 58 51 44 65 1 1 1 1 1 1 8313.8 14044 2150 13863 21536 28029 28029 1 MYESFIESLPFLK Unmodified 1602.8004 0.80036749 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 8 0 1 90.157 90.157 3 1.0044E-06 29149 TMT1-7 93.623 72.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14045 974 13864 21537 28030 28030 1 MYFPDVEFDIK Unmodified 1402.6479 0.64788959 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 77.977 77.977 2 0.030363 25127 TMT1-5 66.19 26.145 38.113 50.968 43.432 20.786 35.674 29.896 36 51 44 22 36 29 1 1 1 1 1 1 8056.2 14046 1632 13865 21538 28031 28031 1 MYGFVNHALELLVIR Unmodified 1773.96 0.95999645 1565 Q02153-2;Q02153 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 9 0 1 82.353 82.353 3 0.0060911 24546 TMT1-8 49.482 24.627 39.393 27.728 28.215 29.204 43.114 45.674 37 29 29 29 44 44 1 1 1 1 1 1 6258.7 14047 1565 13866 21539 28032 28032 1 MYKEEGLK Unmodified 996.49502 0.49501776 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 1 6 0 1 41.48 41.48 3 0.00072285 10771 TMT1-5 94.692 59.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14048 1537 13867 21540 28033 28033 1 MYLGYEYVTAIR Unmodified 1477.7275 0.72753689 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 7 0 1 68.055 68.055 2 0.0018151 20651 TMT1-6 66.758 57.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14049 451 13868 21541 28034 28034 1 MYLMLDNK Unmodified 1026.4878 0.48782389 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 8 0 1 62.86 62.86 2 0.0023436 18674 TMT1-7 81.548 37.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14050 1091 13869 21542 28035 28035 1 MYPPAFR Unmodified 880.42654 0.42654427 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 8 0 1 49.352 49.352 2 0.011176 13311 TMT1-7 104.94 71.206 153.19 200.72 231.95 140.47 222.76 300.65 145 202 232 145 229 288 1 1 1 1 1 1 20645 14051 876 13870 21543 28036 28036 1 MYSYVTEELPQLINANFPVDPQR Unmodified 2723.3265 0.32650246 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 6.67 0.471 1 2 88.794 88.794 3;4 7.5436E-18 28611 TMT1-6 111.45 111.32 70.544 132.72 113.99 96.136 106.25 128.09 67 131 117 96 110 123 4 4 4 4 4 4 26825 14052 637 13871 21544;21545;21546 28037;28038;28039;28040 28040 4 MYVAVWTPYGVLR Oxidation (M) 1569.8014 0.80137054 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 9 0 1 71.098 71.098 2 0.0012892 20069 TMT1-8 82.261 55.663 53.98 81.614 55.646 43.578 63.655 98.388 51 81 58 44 66 94 2 2 2 2 2 2 15408 14053 393 13872 21547 28041;28042 28041 38 2 MYVAVWTPYGVLR Unmodified 1553.8065 0.80645592 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 9 0 2 77.224 77.224 2;3 3.3468E-56 22544 TMT1-8 231.38 178.8 340.67 372.86 316.58 295.08 276.68 412.11 321 377 327 292 291 394 4 4 4 4 4 4 230190 14054 393 13872 21548;21549 28043;28044;28045;28046 28045 4 MYVFGGWVPLVMDDVK Unmodified 1854.9048 0.90484933 1248 P51610-2;P51610;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 9 0 1 92.036 92.036 3 6.1583E-06 28116 TMT1-8 75.764 53.566 23.225 51.289 20.61 0 22.228 22.818 22 50 22 0 22 22 1 1 1 0 1 1 4568.1 14055 1248 13873 21550 28047 28047 1 NAAALSQALR Unmodified 1013.5618 0.56179219 2159 Q8IZQ5 SELH Selenoprotein H yes yes 0 0 0 0 0 7 0 1 44.65 44.65 2 0.025751 11378 TMT1-6 72.928 21.962 53.533 149.44 73.352 89.148 83.547 97.82 51 145 80 87 87 94 1 1 1 1 1 1 18931 14056 2159 13874 21551 28048 28048 1 NAADSYFSLLQGFINSLDESTQESK Unmodified 2763.2875 0.28753399 1988 Q5VW32-2;Q5VW32 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 0 7.5 0.5 1 1 104.37 104.37 4 1.0542E-05 33484 TMT1-6 63.272 50.215 4.2373 19.729 12.022 18.83 6.7796 13.665 4 19 13 18 7 13 1 2 2 2 1 2 1501.2 14057 1988 13875 21552;21553 28049;28050 28049 2 NAAGALDLLK Unmodified 984.5604 0.56039521 854 P23193 TCEA1 Transcription elongation factor A protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 60.766 60.766 2 0.0034337 17788 TMT1-6 96.171 14.981 191.77 254.06 195.3 206.86 179.62 249.65 181 254 204 203 189 239 2 2 2 2 2 2 17218 14058 854 13876 21554;21555 28051;28052 28052 2 NAALNTIVTVYNVHGDQVFK Unmodified 2202.1433 0.14331678 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 8 0 1 66.075 66.075 4 5.2019E-07 19971 TMT1-7 83.213 73.017 53.85 103.92 58.723 114.51 59.86 83.572 51 102 65 109 65 80 1 1 1 1 1 1 13857 14059 1744 13877 21556 28053 28053 1 NAANLIK Unmodified 742.43374 0.43373813 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 7 0 1 43.262 43.262 2 0.0104 10828 TMT1-6 108.24 50.774 169.67 170.46 193.52 167.69 175.94 165.54 160 174 196 167 181 160 1 1 1 1 1 1 17329 14060 1742 13878 21557 28054 28054 1 NAAQELATLLLSLPAPASVQQQSK Unmodified 2477.349 0.34895246 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 93.801 93.801 4 1.148E-11 28784 TMT1-8 83.857 66.368 54.118 49.617 59.712 19.678 43.039 60.6 51 51 59 22 44 58 2 2 2 2 2 2 4342.2 14061 1977 13879 21558 28055;28056 28055 2 NAAQVLVGIPLETGQK Unmodified 1636.9148 0.91482039 2532 Q9BT78-2;Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 0 7 0 1 66.74 66.74 3 1.2098E-11 20124 TMT1-6 121.99 94.957 61.386 94.839 62.078 50.571 78.249 90.509 58 94 65 51 80 87 1 1 1 1 1 1 20090 14062 2532 13880 21559 28057 28057 1 NAATEDLWESLENASGKPIAAVMNTWTK Unmodified 3046.4706 0.47060051 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 1 8 0 1 87.649 87.649 4 4.9017E-12 28213 TMT1-7 88.595 73.891 23.335 28.932 20.958 22.275 27.727 46.113 22 29 22 22 29 44 1 1 1 1 1 1 3621.8 14063 1324 13881 21560 28058 28058 1 NADDDRIPR Unmodified 1070.5105 0.51048491 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 1 2 0 1 27.182 27.182 3 0.024671 5907 TMT1-1 62.823 40.777 46.673 57.87 41.563 52.47 42.337 37.168 44 58 44 51 44 36 1 1 1 1 1 1 4781.1 14064 1754 13882 21561 28059 28059 1 NADELVK Unmodified 787.40758 0.40758296 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 3 1 1 1 41.684 41.684 2 0.0083072 10918 TMT1-3 117.4 50.406 506.85 868.03 640.48 426.66 623.06 718.83 480 858 660 436 638 691 3 3 3 3 3 3 60212 14065 770 13883 21562;21563 28060;28061;28062 28062 3 NADPILISLK Unmodified 1082.6336 0.63356015 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 7 0 1 64.313 64.313 2 0.0024611 19145 TMT1-6 99.283 73.164 107.9 89.667 183.85 233.43 198.24 555.06 102 94 185 227 218 526 1 1 1 1 1 1 35677 14066 2913 13884 21564 28063 28063 1 NADVELQQR Unmodified 1071.5309 0.530886 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 2 0 1 34.396 34.396 2 9.9467E-09 8735 TMT1-1 170.69 112.26 84.572 115.8 115 70.388 135.39 166.7 80 116 116 73 138 160 1 1 1 1 1 1 14674 14067 335;369 13885 21565 28064 28064 1 NAEAVLQSPGLSGK Unmodified 1369.7201 0.72014333 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 52.191 52.191 3 5.2264E-05 14976 TMT1-5 89.541 62.403 115.62 152.33 95.695 111.04 127.25 136.01 109 152 102 109 131 131 1 1 1 1 1 1 25148 14068 1666 13886 21566 28065 28065 1 NAEEFTKK Unmodified 965.48181 0.48181054 1489 P68036;P68036-3;P68036-2;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 1 6 0 1 37.506 37.506 3 0.027384 9238 TMT1-5 65.278 38.23 448.16 631.03 606.51 252.01 543.94 789.31 424 631 608 273 557 755 1 1 1 1 1 1 46392 14069 1489 13887 21567 28066 28066 1 NAENAIEALK Unmodified 1071.556 0.55603811 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 4 0 1 54.027 54.027 3 0.0011648 15844 TMT1-3 90.05 48.624 115.76 121.42 98.617 87.069 114.01 96.951 109 123 102 87 116 94 1 1 1 1 1 1 8796.7 14070 748 13888 21568 28067 28067 1 NAENAIEALKEYEPEMGK Unmodified 2034.9568 0.95682114 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 1 5 0 1 67.717 67.717 4 4.8668E-06 20939 TMT1-4 85.937 81.07 61.11 165.3 48.827 83.126 74.626 152.44 58 160 58 80 80 145 1 1 1 1 1 1 6759.9 14071 748 13889 21569 28068 28068 1 NAENFDR Unmodified 864.37259 0.37259444 501 P05771-2 PRKCB Protein kinase C beta type yes yes 0 0 0 0 0 2 0 1 29.133 29.133 2 0.010713 6626 TMT1-1 106.91 68.075 77.321 109.48 76.711 64.886 84.37 106.32 73 109 80 65 87 102 1 1 1 1 1 1 11933 14072 501 13890 21570 28069 28069 1 NAEPLINLDVNNPDFK Unmodified 1811.9054 0.90537792 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 5 0 1 68.076 68.076 3 8.9628E-06 21052 TMT1-4 89.261 60.964 37.643 104.71 76.815 73.474 92.367 75.182 36 102 80 73 94 73 1 1 1 1 1 1 20731 14073 2947 13891 21571 28070 28070 1 NAEQYKDQADK Unmodified 1308.5946 0.59460847 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3.12 1.54 2 1 1 2 2 35.547 35.547 3;4 2.274E-07 8508 TMT1-3 147.24 98.804 7745.3 10849 9848.4 7317.6 9354.2 10958 7324 10842 10041 7393 9624 10530 13 13 13 13 13 13 1089400 14074 1019 13892 21572;21573;21574;21575;21576;21577;21578;21579 28071;28072;28073;28074;28075;28076;28077;28078;28079;28080;28081;28082;28083 28077 13 NAESAIEALK Unmodified 1044.5451 0.54513908 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5 0 2 54.868 54.868 2;3 0.00049525 15992 TMT1-4 115.57 53.11 385.06 305.3 487.34 288.29 445.26 507.5 363 319 481 298 455 488 2 2 2 2 2 2 81335 14075 2344 13893 21580;21581 28084;28085 28084 2 NAESAIEALKEYEPEMGK Unmodified 2007.9459 0.9459221 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 1 5 0 1 68.674 68.674 4 0.00061395 21333 TMT1-4 63.998 49.837 99.622 131.04 97.399 103.28 127.9 127.47 94 131 102 102 131 123 1 1 1 1 1 1 17323 14076 2344 13894 21582 28086 28086 1 NAESNAELK Unmodified 974.46689 0.46688876 781 P18621-3;P18621;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 0 3 1 1 1 34.588 34.588 2 0.0010649 8014 TMT1-3 83.862 65.55 77.654 79.109 46.362 82.647 107.94 66.21 73 80 51 80 109 65 1 1 1 1 1 1 8155.7 14077 781 13895 21583;21584 28087;28088 28088 2 NAFACFDEEASGFIHEDHLR Unmodified 2364.0229 0.022943647 879 P24844 MYL9 Myosin regulatory light polypeptide 9 yes yes 0 0 0 0 0 4.5 0.5 1 1 64.579 64.579 4 1.0017E-39 20086 TMT1-3 173.06 170.34 397.1 522.28 443.85 388.01 511.36 520.54 375 523 457 388 523 502 5 5 5 5 5 5 258410 14078 879 13896 21585;21586 28089;28090;28091;28092;28093 28090 5 NAFACFDEEATGTIQEDYLR Unmodified 2349.0219 0.021940594 115 P19105;O14950 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 0 0 0 0 0 3.9 0.539 2 7 1 73.292 73.292 3;4 6.1592E-31 23119 TMT1-3 148.06 135.76 972.4 1202.6 1000.8 965.9 971.41 1292 917 1207 1034 955 1012 1238 28 30 30 31 30 31 240910 14079 115 13897 21587;21588;21589;21590;21591;21592;21593;21594;21595;21596 28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128;28129 28106 36 NAFTVLAMMDYPYPTDFLGPLPANPVK Unmodified 2981.4707 0.47072385 2866 Q9UHL4 DPP7 Dipeptidyl peptidase 2 yes yes 0 0 0 0 0 9 0 1 98.084 98.084 4 0.0040677 30333 TMT1-8 38.843 26.041 15.861 30.628 13.3 22.717 28.513 22.638 15 30 15 22 29 22 1 1 1 1 1 1 2539.7 14080 2866 13898 21597 28130 28130 1 NAFVTGIAR Unmodified 947.51886 0.51886475 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 8 0 1 45.951 45.951 2 0.0019128 11965 TMT1-7 110.41 69.556 130.05 188.52 164.33 98.742 156.86 173.55 123 188 167 102 160 167 1 1 1 1 1 1 48597 14081 2079;2399 13899 21598 28131 28131 1 NAFYIGSYQQCINEAQR Unmodified 2060.9374 0.9374231 95 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 0 6 0 1 58.178 58.178 3 1.8964E-05 17404 TMT1-5 79.393 68.068 92.567 61.589 79.497 65.134 62.387 76.038 87 65 80 65 65 73 1 1 1 1 1 1 15492 14082 95 13900 21599 28132 28132 1 NAGAFGFNISFLCK Unmodified 1544.7446 0.74458394 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 9 0 2 77.421 77.421 2;3 2.4252E-16 22545 TMT1-8 148.18 113.93 245.26 317.03 349.58 344.62 269.8 576.47 232 319 356 339 292 548 3 3 3 3 3 3 42516 14083 228 13901 21600;21601 28133;28134;28135 28133 3 NAGAVIGK Unmodified 728.41809 0.41808807 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 7 0 1 40.187 40.187 2 0.0044687 9690 TMT1-6 124.83 62.12 440.92 784.64 612.19 404.28 798.31 823.62 418 775 628 417 808 794 2 2 2 2 2 2 96442 14084 1409;1410 13902 21602 28136;28137 28137 2 NAGFTPQER Unmodified 1018.4832 0.48320752 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 4 0 1 32.57 32.57 2 0.0050875 7337 TMT1-3 98.009 57.436 46.295 111.86 59.371 90.11 76.687 83.092 44 109 65 87 80 80 1 1 1 1 1 1 13806 14085 914 13903 21603 28138 28138 1 NAGLAFIELVNEGR Unmodified 1501.7889 0.7888916 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 6.5 0.5 1 1 74.078 74.078 2;3 7.9583E-09 23593 TMT1-5 106.32 76.556 30.674 35.493 44.414 20.432 51.396 29.447 29 36 44 22 51 29 1 1 1 1 1 1 7872.8 14086 1229 13904 21604;21605 28139;28140 28139 2 NAGNCLSPAVIVGLLK Unmodified 1624.8971 0.89706184 159 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 0 9 0 1 78.808 78.808 3 6.8035E-05 23108 TMT1-8 68.919 42.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14087 159 13905 21606 28141 28141 1 NAGPQIDR Unmodified 869.43553 0.43552905 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 3 0 1 28.185 28.185 2 0.009241 6621 TMT1-2 67.464 34.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14088 1018 13906 21607 28142 28142 1 NAGVEGSLIVEK Unmodified 1214.6507 0.65066678 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 4.67 0.471 1 2 52.234 52.234 2;3 2.9898E-13 14854 TMT1-4 168.98 104.69 649.19 951.32 812.32 667.1 602.42 967.79 614 948 834 665 637 924 5 5 5 5 5 5 131010 14089 638 13907 21608;21609;21610 28143;28144;28145;28146;28147 28146 5 NAIDDGCVVPGAGAVEVAMAEALIK Unmodified 2469.2243 0.22434557 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 5 0 2 89.772 89.772 3;4 1.91E-07 29492 TMT1-4 70.449 53.37 124.49 121.23 74.711 88.618 107.4 104.6 117 123 80 87 110 101 3 3 3 3 3 3 22293 14090 1068 13908 21611;21612 28148;28149;28150 28150 3 NAIDKLFVLFGAEILK Unmodified 1790.0342 0.034207247 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 9 0 1 94.626 94.626 3 2.3051E-07 29196 TMT1-8 97.095 71.505 48.64 73.416 58.401 41.957 24.896 71.778 46 73 60 42 28 68 2 2 2 2 2 2 4961.9 14091 1053 13909 21613 28151;28152 28152 2 NAIEHPVR Unmodified 934.49846 0.49846366 2493 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 0 4 0 1 24.338 24.338 3 0.011815 4210 TMT1-3 71.501 47.546 7.1979 37.47 20.869 14.603 29.143 15.158 7 36 22 15 29 15 1 1 1 1 1 1 1512.6 14092 2493 13910 21614 28153 28153 1 NAIHTFVQSGSHLAAR Unmodified 1707.8805 0.88050057 457 P04040 CAT Catalase yes yes 0 0 0 0 0 9 0 1 40.107 40.107 4 3.5587E-12 8159 TMT1-8 119.46 80.69 99.702 122.63 90.995 64.049 83.639 128.73 94 123 94 65 87 123 1 1 1 1 1 1 22330 14093 457 13911 21615 28154 28154 1 NAINSPMSPALVDVHPEDTQLEENEER Unmodified 3033.3986 0.39855778 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 3 0 1 58.214 58.214 3 4.8488E-44 18477 TMT1-2 144.73 130.85 7.2699 22.56 21.399 22.771 0 15.99 7 22 22 22 0 15 1 1 1 1 0 1 12693 14094 2682 13912 21616 28155 28155 1 NAITVPFK Unmodified 888.5069 0.50690308 2445 Q96QR8 PURB Transcriptional activator protein Pur-beta yes yes 0 0 0 0 0 8 0 1 55.71 55.71 2 0.010262 15871 TMT1-7 99.442 85.666 115.82 98.92 107.58 86.269 128.14 143.45 109 102 109 87 131 138 1 1 1 1 1 1 7395.7 14095 2445 13913 21617 28156 28156 1 NALANPLYCPDYR Unmodified 1565.7297 0.72966216 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 6 0 1 55.201 55.201 3 0.0020937 16173 TMT1-5 69.352 58.408 61.214 110.55 77.734 42.306 61.311 137.9 58 109 80 44 65 131 1 1 1 1 1 1 13171 14096 851 13914 21618 28157 28157 1 NALESYAFNMK Unmodified 1286.5965 0.59652272 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 7 0 1 61.91 61.91 3 8.8676E-05 18190 TMT1-6 103.43 82.394 307.28 416.88 300.79 229.78 312.26 376.98 290 416 312 232 321 362 2 2 2 2 2 2 35130 14097 618 13915 21619 28158;28159 28158 2 NALGPGLSPELGPLPALR Unmodified 1770.9992 0.99921872 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 7.5 0.5 1 1 71.314 71.314 3 3.2684E-08 21940 TMT1-6 100.77 78.861 68.807 117.82 57.8 114.8 105.62 90.794 65 116 65 110 109 88 2 2 2 2 2 2 15489 14098 2166 13916 21620;21621 28160;28161 28160 2 NALLQQTQPLDSCGEQTITTLYTNWYLESLLR Unmodified 3768.8669 0.86689051 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 8 0 1 95.253 95.253 4 0.034022 31043 TMT1-7 24.591 19.047 7.3961 15.356 6.3037 6.9963 14.834 15.567 7 15 7 7 15 15 1 1 1 1 1 1 4135.6 14099 1314 13917 21622 28162 28162 1 NALLSLAK Unmodified 828.5069 0.50690308 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 9 0 1 57.554 57.554 2 0.0015019 14712 TMT1-8 143.28 47.375 741.67 1531.1 828.02 883.42 1196.9 1369.8 703 1499 890 874 1228 1317 2 2 2 2 2 2 142690 14100 461 13918 21623 28163;28164 28163 2 NALLSQNPEK Unmodified 1112.5826 0.58258722 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 6 0 1 43.663 43.663 2 0.00066308 11637 TMT1-5 110.53 84.091 139.16 135.44 120.41 86.396 80.742 183.18 131 138 123 87 87 174 1 1 1 1 1 1 13931 14101 1534 13919 21624 28165 28165 1 NALNIVK Unmodified 770.46504 0.46503826 219 O60271-5;O60271-3;O60271-4;O60271-2;O60271;O60271-9 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 0 0 8 0 1 47.895 47.895 2 0.0007301 12772 TMT1-7 114.19 21.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14102 219 13920 21625 28166 28166 1 NALSSLWGK Unmodified 974.51853 0.5185304 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 9 0 1 62.926 62.926 3 0.0084649 16882 TMT1-8 60.019 30.21 91.879 130.91 136.49 101.12 118.56 158.65 87 131 138 102 123 152 1 1 1 1 1 1 8842.9 14103 1353 13921 21626 28167 28167 1 NALVSHLDGTTPVCEDIGR Unmodified 2052.9899 0.9898526 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 52.139 52.139 3 7.6447E-45 15136 TMT1-3 183.53 162.9 137.7 181.92 146.31 147.01 204.58 242.54 130 182 152 146 210 233 2 2 2 2 2 2 66524 14104 979 13922 21627;21628 28168;28169 28168 2 NALWHTGNTPGQVR Unmodified 1549.775 0.77497287 554 P07996;P07996-2;P35442 THBS1;THBS2 Thrombospondin-1;Thrombospondin-2 yes no 0 0 0 0 0 6.83 2.67 1 1 3 1 38.731 38.731 3;4 1.9303E-14 7643 TMT1-8 143.64 116.15 1244.3 1591.4 1240.2 1160.2 1389.6 1509.2 1174 1594 1288 1153 1429 1453 7 7 7 7 7 7 600850 14105 554 13923 21629;21630;21631;21632;21633;21634 28170;28171;28172;28173;28174;28175;28176;28177;28178 28177 9 NANLSTIK Unmodified 859.47633 0.47633123 61 O00329;O00329-2 PIK3CD Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform yes no 0 0 0 0 0 7 0 2 42.159 42.159 2;3 0.0054146 10450 TMT1-6 74.173 26.598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14106 61 13924 21635;21636 28179;28180 28180 2 NAPAIIFIDELDAIAPK Unmodified 1809.9877 0.98765098 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 5.5 0.5 2 2 91.227 91.227 2;3;4 9.7995E-10 30047 TMT1-5 105.89 86.047 633.17 836.98 716.86 473.19 754.64 820.19 598 837 731 485 768 789 6 5 5 6 5 5 130080 14107 1311 13925 21637;21638;21639;21640 28181;28182;28183;28184;28185;28186 28184 6 NAPCILFIDEIDAVGR Unmodified 1801.9033 0.90326943 3020 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 0 5 0 1 79.96 79.96 3 0.03107 25723 TMT1-4 40.693 29.079 38.201 43.658 34.85 28.961 35.042 37.376 36 44 36 29 36 36 1 1 1 1 1 1 3315.7 14108 3020 13926 21641 28187 28187 1 NAQIILK Unmodified 798.49634 0.49633839 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 48.312 48.312 2 0.0030786 12773 TMT1-7 88.029 28.824 138.73 149.34 181.15 112.9 164.35 149.88 131 152 181 116 167 145 1 1 1 1 1 1 6449.7 14109 758 13927 21642;21643 28188;28189 28189 2 NASELFPAVVK Unmodified 1173.6394 0.63937381 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 7 0 1 62.136 62.136 3 0.0052239 18345 TMT1-6 67.456 48.214 53.857 87.746 71.24 49.602 100.78 105.86 51 87 73 51 102 102 1 1 1 1 1 1 9161 14110 51 13928 21644 28190 28190 1 NASEMIDK Unmodified 906.41168 0.41168206 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 4 0 1 42.252 42.252 2 0.0070156 11207 TMT1-3 103.7 73.891 146.48 196.98 101.21 93.751 157.35 166.07 138 196 109 94 160 160 1 1 1 1 1 1 14147 14111 1038 13929 21645 28191 28191 1 NASNDIVR Unmodified 887.44609 0.44609374 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 3 0 1 28.92 28.92 2 0.026991 6909 TMT1-2 83.948 32.982 61.62 64.19 48.726 51.501 71.133 83.25 58 65 51 51 73 80 1 1 1 1 1 1 7453 14112 2465 13930 21646 28192 28192 1 NASTFEDVTQVSSAYQK Unmodified 1873.8694 0.86938634 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 5 0 1 57.345 57.345 3 1.0552E-10 16871 TMT1-4 91.518 72.195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14113 1766 13931 21647 28193 28193 1 NATLSQVLR Unmodified 1000.5665 0.56654322 2736 Q9NRY5 FAM114A2 Protein FAM114A2 yes yes 0 0 0 0 0 7 0 1 47.117 47.117 2 0.00348 12382 TMT1-6 70.816 20.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14114 2736 13932 21648 28194 28194 1 NATNVEQAFMTMAAEIK Unmodified 1867.8808 0.88081943 2616 Q9H0U4;Q92928 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 0 0 0 0 0 6.67 0.471 1 2 84.221 84.221 3;4 4.7659E-14 27020 TMT1-6 124.63 108.45 338.57 404.45 281.56 334.62 319.43 454.6 319 406 298 327 335 435 5 5 5 5 5 5 66030 14115 2616 13933 21649;21650;21651 28195;28196;28197;28198;28199 28198 5 NATNVEQSFMTMAAEIK Unmodified 1883.8757 0.87573405 1444 P62820;P62820-2;P62820-3 RAB1A Ras-related protein Rab-1A yes no 0 0 0 0 0 6 0 1 77.711 77.711 3 2.6297E-14 25093 TMT1-5 126.84 19.894 61.625 64.202 48.027 67.163 54.195 98.658 58 65 51 65 58 94 1 1 1 1 1 1 16407 14116 1444 13934 21652 28200 28200 1 NAVAAFLLMLR Unmodified 1217.6954 0.6954489 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 87.581 87.581 2 0.019595 26479 TMT1-8 68.371 39.948 23.228 52.377 19.207 30.027 27.92 30.117 22 51 22 29 29 29 1 1 1 1 1 1 2466.7 14117 2061 13935 21653 28201 28201 1 NAVEEYVYEFR Unmodified 1417.6514 0.65139506 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 3.5 0.5 1 1 63.358 63.358 2 2.0581E-08 20579 TMT1-2 120.96 98.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14118 2303 13936 21654;21655 28202;28203 28202 2 NAVEEYVYEMR Unmodified 1401.6235 0.62346575 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 3 0 1 59.299 59.299 2 2.354E-06 18889 TMT1-2 132.32 99.098 61.305 71.946 95.238 41.394 54.317 129.57 58 73 94 44 58 123 1 1 1 1 1 1 15654 14119 1009 13937 21656 28204 28204 1 NAVITVPAYFNDSQR Unmodified 1693.8424 0.84238373 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 60.884 60.884 3 2.5654E-15 18411 TMT1-5 138.39 108.9 69.002 63.317 71.178 82.191 53.504 98.677 65 65 73 80 58 94 1 1 1 1 1 1 27740 14120 1058 13938 21657;21658 28205;28206 28205 2 NAVIVAK Unmodified 713.44357 0.44357454 216;1781 O60256-3;O60256;O60256-4;O60256-2;Q14558;Q14558-2 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 no no 0 0 0 0 0 7 0 1 42.069 42.069 2 0.0078611 10417 TMT1-6 122.78 36.663 99.362 176.73 102.28 102.29 164.84 149.87 94 174 109 102 167 145 1 1 1 1 1 1 13067 14121 216;1781 13939 21659 28207 28207 1 NAVIVALSSK Unmodified 1000.5917 0.59169534 1376 P61086;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 9 0 1 58.664 58.664 3 0.00051146 15166 TMT1-8 96.015 68.273 76.974 154.92 96.493 94.017 158.14 142.6 73 152 102 94 160 138 1 1 1 1 1 1 19588 14122 1376 13940 21660 28208 28208 1 NAVLAIYTIYR Unmodified 1295.7238 0.72377215 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 9 0 1 67.429 67.429 3 3.6022E-05 18650 TMT1-8 101.39 75.351 30.769 35.759 28.11 21.716 34.825 53.372 29 36 29 22 36 51 1 1 1 1 1 1 6497.2 14123 1286 13941 21661 28209 28209 1 NAVLEHMEELQEQVALLTER Unmodified 2351.1791 0.17910994 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 5 0 1 80.466 80.466 3 0.00049997 25918 TMT1-4 55.744 41.284 23.421 36.725 0 15.853 28.829 22.629 22 36 0 15 29 22 1 1 0 1 1 1 7580.5 14124 356 13942 21662 28210 28210 1 NAVTQEFGPVPDTAR Unmodified 1600.7845 0.7845345 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 4 0 1 50.407 50.407 3 4.9733E-15 14400 TMT1-3 134.81 123.99 106.77 129.53 158.95 131.64 109.8 159.96 101 131 160 131 116 153 2 2 2 2 2 2 53930 14125 2492 13943 21663 28211;28212 28211 2 NAYAVLYDIILK Unmodified 1394.781 0.78095267 1603 Q06323 PSME1 Proteasome activator complex subunit 1 yes yes 0 0 0 0 0 8 0 2 86.444 86.444 2;3 1.4591E-07 27692 TMT1-7 117.79 90.678 438.88 844.27 362.52 609.41 562.04 758.94 415 827 409 587 589 727 4 4 4 4 4 4 186630 14126 1603 13944 21664;21665 28213;28214;28215;28216 28213 4 NAYAVLYDIILKNFEK Unmodified 1913.0299 0.02985015 1603 Q06323 PSME1 Proteasome activator complex subunit 1 yes yes 0 0 0 0 1 9 0 1 90.015 90.015 4 0.026471 27655 TMT1-8 45.723 19.288 15.934 14.642 14.58 15.526 0 15.99 15 15 15 15 0 15 1 1 1 1 0 1 7193.9 14127 1603 13945 21666 28217 28217 1 NAYVWTLK Unmodified 993.52837 0.5283668 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 9 0 1 59.894 59.894 2 0.0013209 15732 TMT1-8 146.81 75.897 466.21 993.32 692.55 672.41 583.36 1058.9 443 974 725 663 622 1009 2 2 2 2 2 2 206340 14128 128 13946 21667 28218;28219 28219 2 NCAAYLK Unmodified 838.40072 0.40072345 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 0 6.67 0.471 1 2 40.429 40.429 2;3 0.0032605 9772 TMT1-6 139.92 69.004 1050.8 836.5 1223.7 1184.3 1319.7 1532.6 990 872 1231 1173 1364 1473 5 5 5 5 5 5 264190 14129 1019;1020;1029;2091 13947 21668;21669;21670 28220;28221;28222;28223;28224 28223 5 NCFASVFEK Unmodified 1100.4961 0.4960804 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 7.5 0.5 1 1 59.218 59.218 2;3 2.8137E-05 17249 TMT1-7 154.05 98.378 699.86 911.64 626.33 663.58 797.88 793.79 660 911 660 655 818 766 4 4 4 4 4 4 100240 14130 129 13948 21671;21672 28225;28226;28227;28228 28227 4 NCGEMSEIEAK Unmodified 1266.522 0.52203715 3014 Q9Y4G6 TLN2 Talin-2 yes yes 0 0 0 0 0 3 0 2 46.239 46.239 3 0.0014627 14305 TMT1-2 81.92 53.637 121.99 219.87 230.85 142.95 152.45 242.96 116 218 232 146 160 232 2 2 2 2 2 2 19484 14131 3014 13949 21673;21674 28229;28230 28230 2 NCGQMSEIEAK Unmodified 1265.538 0.53802156 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.25 0.829 1 1 2 42.404 42.404 2;3 2.2395E-32 11161 TMT1-3 215.87 166.16 547.93 860.86 776.38 635.58 823.26 1067 519 856 794 638 850 1023 4 4 4 4 4 4 245600 14132 3010 13950 21675;21676;21677;21678 28231;28232;28233;28234 28233 4 NCGQMSEIEAK Oxidation (M) 1281.5329 0.53293619 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 2.5 0.5 1 1 34.926 34.926 3 0.0050889 9353 TMT1-2 78.692 53.9 129.89 251.75 137.43 107.46 185.23 188.73 123 247 146 109 188 182 2 2 2 2 2 2 15888 14133 3010 13950 21679;21680 28235;28236;28237 28237 337 3 NCIIVSPDAGGAK Unmodified 1300.6445 0.64453555 661 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 no no 0 0 0 0 0 6 0 1 48.147 48.147 3 0.003278 13415 TMT1-5 49.929 21.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14134 661 13951 21681 28238 28238 1 NCKEFEDFLK Unmodified 1328.6071 0.60708741 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 1 6 0 1 56.089 56.089 3 0.0184 16545 TMT1-5 63.944 27.097 300.97 352.91 333.76 232.16 313.41 401.47 284 356 339 236 323 385 1 1 1 1 1 1 22299 14135 2662 13952 21682 28239 28239 1 NCLALADDK Unmodified 1018.4753 0.47534495 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 4.5 0.5 1 1 46.543 46.543 2 0.0014236 12870 TMT1-3 119.68 65.523 130.91 259.08 140.37 177.12 249.81 225.26 124 254 152 174 254 218 2 2 2 2 2 2 22378 14136 268 13953 21683;21684 28240;28241 28240 2 NCLALADDKK Unmodified 1146.5703 0.57030797 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 1 6 0 1 42.675 42.675 3 0.0010303 11212 TMT1-5 96.64 73.265 597.46 941.09 678.29 392.27 820.78 885.88 565 933 698 410 831 853 1 1 1 1 1 1 70587 14137 268 13954 21685 28242 28242 1 NCLECQQHSQLK Unmodified 1543.6871 0.68714542 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 5 0 1 33.651 33.651 3 1.6956E-07 7522 TMT1-4 102.87 73.184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14138 1229 13955 21686 28243 28243 1 NCLLETAK Unmodified 947.47462 0.47461667 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 6 0 1 45.893 45.893 2 0.012634 12520 TMT1-5 96.331 43.648 130.32 142.85 158.07 130.69 163.53 149.9 123 145 160 131 167 145 1 1 1 1 1 1 12395 14139 251 13956 21687 28244 28244 1 NCLTNFHGMDLTR Unmodified 1577.7079 0.70788086 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 7 0 1 49.903 49.903 3 0.0039883 13469 TMT1-6 64.52 48.641 114.87 212.85 170.19 106.05 156.27 181.02 109 210 174 109 160 174 1 1 1 1 1 1 17002 14140 1386 13957 21688 28245 28245 1 NCLVNDQGVVK Unmodified 1244.6183 0.6183208 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 46.321 46.321 3 0.0011425 12551 TMT1-4 58.476 47.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14141 1601 13958 21689 28246 28246 1 NCMTDLLAK Unmodified 1064.4995 0.49945121 1543 Q00765;Q00765-2 REEP5 Receptor expression-enhancing protein 5 yes no 0 0 0 0 0 7 0 1 57.723 57.723 2 0.0054205 16567 TMT1-6 97.277 75.191 92.242 131.92 74.585 80.707 121.63 96.733 87 131 80 80 123 94 1 1 1 1 1 1 10194 14142 1543 13959 21690 28247 28247 1 NCNDFQYESK Unmodified 1303.5139 0.5139153 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 4 0 1 41.725 41.725 3 0.00047722 10968 TMT1-3 99.283 74.901 322.33 498.14 406.8 337.65 400.99 451.2 305 495 419 338 413 434 2 2 2 2 2 2 86112 14143 1588 13960 21691 28248;28249 28248 2 NCPHIVVGTPGR Unmodified 1305.6612 0.66118866 1738 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 0 6 0 1 34.647 34.647 3 0.000868 8042 TMT1-5 78.705 61.379 223.72 258.76 231.04 244.71 204.26 334.23 211 261 239 240 217 319 2 2 2 2 2 2 18269 14144 1738 13961 21692 28250;28251 28250 2 NCPHVVVGTPGR Unmodified 1291.6455 0.6455386 40 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 0 6 0 1 31.525 31.525 3 0.0045754 6775 TMT1-5 65.563 47.251 84.903 94.054 77.842 59.411 108.46 82.185 80 95 80 58 109 80 2 2 2 1 2 2 6154.1 14145 40 13962 21693 28252;28253 28252 2 NCSETQYESK Unmodified 1244.4979 0.49793089 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 2.5 0.5 1 1 33.025 33.025 3 3.0317E-07 8420 TMT1-2 130.01 123.57 130.23 181.46 139.85 123.48 139.76 181.5 123 181 145 123 145 174 1 1 1 1 1 1 16913 14146 1411 13963 21694;21695 28254;28255 28255 2 NCSSPEFSK Unmodified 1054.439 0.43895945 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 5 0 1 38.491 38.491 2 0.005339 9445 TMT1-4 97.456 63.66 53.839 103.89 60.515 74.308 99.642 105.89 51 102 65 73 102 102 1 1 1 1 1 1 6648.9 14147 2495 13964 21696 28256 28256 1 NCTIVSPDAGGAK Unmodified 1288.6082 0.60815004 1360 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 0 0 5 0 1 41.788 41.788 3 0.0016452 10738 TMT1-4 72.031 49.703 145 354.77 215.15 165.23 238.14 245.85 138 346 226 167 243 237 1 1 1 1 1 1 15488 14148 1360 13965 21697 28257 28257 1 NCVAIAADRR Unmodified 1144.5771 0.57712468 1191 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 1 5 0 1 28.89 28.89 3 0.021139 5678 TMT1-4 61.353 20.629 38.189 34.993 44.044 28.55 27.732 37.585 36 36 44 29 29 36 1 1 1 1 1 1 3162.2 14149 1191 13966 21698 28258 28258 1 NCVVELNFGQK Unmodified 1306.634 0.63397086 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 7 0 1 58.245 58.245 2 3.0352E-06 16782 TMT1-6 101.82 53.534 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14150 1915 13967 21699 28259 28259 1 NCWQNYLDFHR Unmodified 1551.6677 0.6677306 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 0 7 0 1 56.112 56.112 3 2.3578E-07 15913 TMT1-6 141.08 99.001 169.56 223.06 166.46 169.97 140.18 198.54 160 223 174 167 148 190 1 1 1 1 1 1 60296 14151 712 13968 21700 28260 28260 1 NDANPETHAFVTSPEIVTALAIAGTLK Unmodified 2779.4392 0.43922403 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 83.585 83.585 4 6.1028E-29 26686 TMT1-6 118.63 98.738 245.92 272.46 276.5 272.03 234.71 324.83 232 276 283 268 247 311 4 4 4 4 4 4 26638 14152 2492 13969 21701;21702 28261;28262;28263;28264 28261 4 NDASHLLVFTTDAK Unmodified 1530.7678 0.7678218 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 56.786 56.786 3 1.9578E-10 16775 TMT1-5 122.63 94.768 2096.9 2835.9 2596.4 2024.9 2023.6 3028.3 1982 2839 2650 2029 2123 2895 7 7 7 7 7 7 459460 14153 484 13970 21703;21704;21705;21706 28265;28266;28267;28268;28269;28270;28271 28267 7 NDATAQAFLAEASVMTQLR Unmodified 2035.9997 0.99968901 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 6 0 1 80.073 80.073 3 0.0086142 25926 TMT1-5 45.135 34.796 53.941 80.424 63.306 43.249 56.87 52.743 51 80 65 44 58 51 1 1 1 1 1 1 9476 14154 1083 13971 21707 28272 28272 1 NDDDEEEAAR Unmodified 1162.4374 0.43743912 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 1 0 1 23.003 23.003 2 0.0070134 4682 TMT 1-phospho 88.596 82.005 15.778 41.188 18.42 15.029 14.281 20.912 15 40 20 15 15 20 1 1 1 1 1 1 3677.6 14155 1597 13972 21708 28273 28273 1 NDEELNK Unmodified 860.38758 0.3875758 612;732;2343;2134 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2;P16104;Q8IUE6;Q93077 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;H2AFX;HIST2H2AB;HIST1H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-C no no 0 0 0 0 0 4.33 2.67 1 2 2 1 1 1 1 34.771 34.771 2;3 4.035E-05 9022 TMT1-1 161.9 131.29 17232 18861 18712 19044 28726 13581 16252 19113 19204 18938 28745 13509 9 9 9 9 9 9 3055200 14156 612;732;2134;2343 13973 21709;21710;21711;21712;21713;21714;21715;21716;21717 28274;28275;28276;28277;28278;28279;28280;28281;28282;28283 28276 10 NDEELNKLLGK Unmodified 1271.6721 0.67213051 612 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q9BTM1-2 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1 no no 0 0 0 0 1 5.5 0.5 1 1 57.94 57.94 3 9.2968E-07 17291 TMT1-5 129.84 111.11 5008.5 10235 3266.5 4594.5 2750.4 12908 4734 9988 3799 4429 3255 12182 2 2 2 2 2 2 374550 14157 612 13974 21718;21719 28284;28285 28285 2 NDEELNKLLGR Unmodified 1299.6783 0.67827852 2343 Q93077 HIST1H2AC Histone H2A type 1-C no no 0 0 0 0 1 5 0 1 53.996 53.996 3 0.00041393 15539 TMT1-4 99.5 88.221 759.75 1149.8 456.47 627.33 532.14 1483.6 716 1136 515 608 585 1406 2 2 2 2 2 2 96484 14158 2343 13975 21720 28286;28287 28286 2 NDELNHLEEEGR Unmodified 1453.6433 0.64334957 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 2 0 1 39.671 39.671 3 5.8803E-05 10842 TMT1-1 101.53 87.101 37.97 81.87 41.231 28.58 35.06 37.376 36 80 44 29 36 36 1 1 1 1 1 1 6726.2 14159 1999 13976 21721 28288 28288 1 NDEYENLFNMIVEIPR Unmodified 1994.9408 0.94077715 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 5 0 1 88.626 88.626 3 1.4611E-05 29113 TMT1-4 87.287 82.739 15.907 37.231 0 31.454 12.903 39.074 15 36 0 29 15 37 1 1 0 1 1 1 2295.1 14160 2633 13977 21722 28289 28289 1 NDFMGSLSFGISELQK Unmodified 1771.8451 0.84508585 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 0 7 0 1 79.667 79.667 3 8.0758E-05 25146 TMT1-6 78.441 68.384 54.064 64.578 56.004 58.464 84.665 106.32 51 65 58 58 87 102 1 1 1 1 1 1 11900 14161 501 13978 21723 28290 28290 1 NDFQLIGIQDGYLSLLQDSGEVR Unmodified 2579.2867 0.28674613 1477 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 0 0 5.67 0.745 3 2 1 87.873 87.873 3;4 1.0364E-17 28916 TMT1-5 109.39 90.347 209.63 218.66 108.4 198.49 144.7 205.87 197 219 116 190 152 197 9 8 6 9 6 7 96270 14162 1477 13979 21724;21725;21726;21727;21728;21729 28291;28292;28293;28294;28295;28296;28297;28298;28299;28300 28298 10 NDFTEEEEAQVR Unmodified 1465.6321 0.63211618 1474 P63208 SKP1 S-phase kinase-associated protein 1 yes yes 0 0 0 0 0 2 0 1 42.952 42.952 3 8.0823E-07 12118 TMT1-1 116.51 90.528 46.472 81.055 55.699 43.984 41.921 60.632 44 80 58 44 44 58 1 1 1 1 1 1 20591 14163 1474 13980 21730 28301 28301 1 NDGVLLLQALTR Unmodified 1311.751 0.75104953 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 8 0 1 73.851 73.851 2 8.4205E-05 22988 TMT1-7 105.66 56.863 46.406 95.982 54.118 59.384 41.726 45.713 44 94 58 58 44 44 1 1 1 1 1 1 10693 14164 237 13981 21731 28302 28302 1 NDIASHPPVEGSYAPR Unmodified 1708.8169 0.81689726 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 3 0 1 39.262 39.262 3 2.8181E-09 11036 TMT1-2 114.96 89.636 216.55 229.98 199.45 143.29 175.72 234.84 204 233 204 145 182 225 3 3 3 3 3 3 31756 14165 2071 13982 21732 28303;28304;28305 28304 3 NDIVNMLVGNK Unmodified 1215.6282 0.6281572 2700 Q9NP72;Q9NP72-2 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 8 0 1 70.407 70.407 2 6.8519E-05 21640 TMT1-7 114.83 67.943 38.07 50.849 50.703 27.74 49.741 67.871 36 51 51 29 51 65 1 1 1 1 1 1 6509.6 14166 2700 13983 21733 28306 28306 1 NDKSEEEQSSSSVK Unmodified 1552.6853 0.68527397 547 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 1 3.25 0.829 1 1 2 30.986 30.986 3;4 4.8773E-10 6673 TMT1-3 119.92 102.01 532.46 703.78 624.19 524.93 795.96 426.07 503 705 640 528 798 421 5 5 5 5 5 5 71389 14167 547 13984 21734;21735;21736;21737 28307;28308;28309;28310;28311 28311 5 NDLAVVDVR Unmodified 999.53491 0.53490874 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 3 0.816 1 1 1 48.273 48.273 2 0.0001617 14616 TMT1-2 147.78 114.14 715.16 1026 662.88 659.01 808.82 938.45 675 1020 700 653 833 902 4 4 4 4 4 4 223640 14168 786 13985 21738;21739;21740 28312;28313;28314;28315 28314 4 NDLEKGDVK Unmodified 1016.5138 0.51383895 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 4 0 1 37.867 37.867 3 0.038334 9487 TMT1-3 56.225 20.266 152.73 339.74 192.08 168.28 149.23 302.75 145 332 204 167 160 288 1 1 1 1 1 1 8909.8 14169 1286 13986 21741 28316 28316 1 NDLSPASSGNAVYDFFIGR Unmodified 2028.9541 0.95411902 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 7 0 2 77.731 77.731 2;3 1.2195E-07 24406 TMT1-6 91.616 75.726 138.69 220.45 128.76 148.75 167.61 220.14 131 218 138 146 174 211 2 2 2 2 2 2 38533 14170 1794 13987 21742;21743 28317;28318 28317 2 NDLSPTTVMSEGAR Unmodified 1476.6879 0.68785692 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 4 0 1 49.428 49.428 2 1.6912E-14 14047 TMT1-3 139.7 106.67 68.833 117.89 53.382 43.851 56.329 67.683 65 116 58 44 58 65 1 1 1 1 1 1 14772 14171 946 13988 21744 28319 28319 1 NDLVEALKR Unmodified 1056.5928 0.59275797 1145 P47756-2 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 0 1 7 0 1 50.08 50.08 3 0.00067126 13509 TMT1-6 105.4 53.952 503.38 889.14 664.68 559.81 614.54 819.27 477 878 689 559 639 785 1 1 1 1 1 1 107730 14172 1145 13989 21745 28320 28320 1 NDNDTFTVK Unmodified 1052.4775 0.47745344 831;1771 P21333-2;P21333;Q14315-2;Q14315 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 0 3 1.41 1 2 44.923 44.923 2 1.3622E-05 11888 TMT1-3 154.81 124.24 1845.9 2543.1 2473.7 2043.6 2519.5 2940.6 1746 2546 2520 2048 2595 2826 4 4 4 4 4 4 526120 14173 831;1771 13990 21746;21747;21748 28321;28322;28323;28324 28322 4 NDPFTSDPFTK Unmodified 1267.5721 0.57208211 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 5 0 1 61.09 61.09 3 0.013386 18334 TMT1-4 58.487 46.127 68.803 86.508 84.979 81.221 61.39 83.528 65 87 87 80 65 80 1 1 1 1 1 1 7578 14174 2835 13991 21749 28325 28325 1 NDPYHPDHFNCANCGK Unmodified 1944.7632 0.76316391 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 34.593 34.593 4 7.7005E-07 8162 TMT1-3 97.291 85.252 1169.2 1171.9 1237.9 1177.9 1556.4 1593 1102 1195 1263 1172 1592 1536 4 4 4 4 4 4 157570 14175 1149 13992 21750;21751 28326;28327;28328;28329 28326 4 NDQCYDDIR Unmodified 1197.4721 0.47205049 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 2 0 1 35.619 35.619 2 9.7176E-05 9234 TMT1-1 150.81 107.18 200.42 237.48 197.63 151.59 205.4 273.43 189 239 203 153 212 262 2 2 2 2 2 2 31011 14176 2913 13993 21752 28330;28331 28330 2 NDQCYEDIR Unmodified 1211.4877 0.48770055 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 2 0 1 36.362 36.362 2 0.022085 9485 TMT1-1 77.192 55.728 54.252 33.8 50.592 51.379 71.688 67.244 51 36 51 51 73 65 1 1 1 1 1 1 15682 14177 2512 13994 21753 28332 28332 1 NDQDTWDYTNPNLSGQGDPGSNPNKR Unmodified 2889.255 0.25500509 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 1 4 0 1 48.197 48.197 4 2.2868E-08 13578 TMT1-3 76.606 66.277 37.968 65.675 55.294 74.752 92.601 66.648 36 65 58 73 94 65 1 1 1 1 1 1 17542 14178 713 13995 21754 28333 28333 1 NDSESSGVLYSR Unmodified 1312.5895 0.58952309 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 2.5 0.5 1 1 37.462 37.462 2 6.3603E-25 10235 TMT1-2 194.29 155.74 139.26 135.7 104.16 110.68 119.41 121.31 131 138 109 109 123 117 3 3 3 3 3 3 13927 14179 2135 13996 21755;21756 28334;28335;28336 28336 3 NDSQLVIEAYK Unmodified 1278.6456 0.6455814 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 5 0 1 55.544 55.544 3 4.2993E-05 16188 TMT1-4 83.617 49.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14180 2449 13997 21757 28337 28337 1 NDSYTLHK Unmodified 976.46141 0.46140945 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 5 0 1 35.17 35.17 3 0.008397 8078 TMT1-4 76.465 52.908 169.84 211.95 129.79 133.55 101.06 198.59 160 212 138 131 109 189 1 1 1 1 1 1 9470.8 14181 1416 13998 21758 28338 28338 1 NDTSGEYKK Unmodified 1040.4775 0.47745344 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 5 0 1 30.982 30.982 3 0.021796 6429 TMT1-4 63.073 36.955 326.38 303.63 251.28 252.76 292.98 146.21 307 310 261 250 296 145 1 1 1 1 1 1 39406 14182 555 13999 21759 28339 28339 1 NDVAWNFEK Unmodified 1121.5142 0.5141733 528 P07203;Q98234 GPX1 Glutathione peroxidase 1 yes no 0 0 0 0 0 5.5 0.5 1 1 56.812 56.812 2;3 0.00019726 16835 TMT1-5 146.11 94.38 459.35 511.59 449.88 357.18 620.66 516.36 433 517 461 362 626 501 1 1 1 1 1 1 69098 14183 528 14000 21760;21761 28340;28341 28341 2 NDVPLPTDSR Unmodified 1112.5462 0.54620171 2564 Q9BX67-2;Q9BX67 JAM3 Junctional adhesion molecule C yes no 0 0 0 0 0 2.67 0.471 1 2 42.151 42.151 2;3 6.1486E-07 12102 TMT1-2 165.18 109.94 230.4 399.46 252.73 296.23 301.93 284.53 218 394 269 290 311 275 3 3 3 3 3 3 42852 14184 2564 14001 21762;21763;21764 28342;28343;28344 28343 3 NDYEARPQYYK Unmodified 1445.6575 0.65754307 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 1 4 0 1 37.988 37.988 3 5.7325E-05 9492 TMT1-3 110.08 71.443 225.92 285.92 379.3 231.71 251.36 411.77 214 289 377 237 264 393 1 1 1 1 1 1 49787 14185 228 14002 21765 28345 28345 1 NEALIALLR Unmodified 1011.6077 0.60767976 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 7.5 0.5 1 1 65.927 65.927 2 0.0050667 19808 TMT1-7 98.055 75.035 327.45 553.23 400.95 394.28 604.5 388.9 310 547 419 393 608 381 2 2 2 2 2 2 103040 14186 690 14003 21766;21767 28346;28347 28347 2 NECFLQHKDDNPNLPR Unmodified 1995.9221 0.92210739 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 5 0 1 41.773 41.773 4 2.4213E-18 10767 TMT1-4 149 132.52 199.64 289.26 285.45 223.87 268.09 300.42 189 289 290 225 276 289 1 1 1 1 1 1 28482 + 14187 28 14004 21768 28348 28348 1 NECLEAGTLFQDPSFPAIPSALGFK Unmodified 2708.3156 0.31560342 761 P17655 CAPN2 Calpain-2 catalytic subunit yes yes 0 0 0 0 0 7 0 3 87.827 87.827 3;4;5 1.9437E-07 28222 TMT1-6 70.295 51.757 69.734 86.039 109.26 70.956 123.38 89.221 66 87 109 73 124 87 3 3 3 3 3 3 28614 14188 761 14005 21769;21770;21771 28349;28350;28351 28350 3 NEDELEFAK Unmodified 1093.4928 0.49276916 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 2.5 0.5 1 1 51.682 51.682 3 0.0081053 15622 TMT1-1 69.276 61.365 68.674 94.782 99.734 78.912 137.38 97.35 65 95 101 80 138 95 2 2 2 2 2 2 11541 14189 3011 14006 21772;21773 28352;28353 28352 2 NEDITEPQSILAAAEK Unmodified 1727.8578 0.85775902 2969 Q9Y2Q3;Q9Y2Q3-4 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 3.5 0.5 1 1 64.332 64.332 2;3 4.2606E-28 19845 TMT1-3 183.96 149.21 286.1 272.17 195.53 142.46 232.26 325.96 269 277 203 145 239 312 2 2 2 2 2 2 60495 14190 2969 14007 21774;21775 28354;28355 28355 2 NEDVDPMAASAEYELEK Unmodified 1909.8251 0.82513827 2453 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 0 0 2 0 1 62.974 62.974 3 4.9004E-08 20022 TMT1-1 79.311 70.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14191 2453 14008 21776 28356 28356 1 NEDVNTNLTHLLNILSELVEK Unmodified 2407.2595 0.25946875 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 8 0 1 99.247 99.247 4 2.5935E-05 32417 TMT1-7 66.12 47.084 0 7.3339 6.8239 6.9597 15.129 7.0303 0 7 7 7 15 7 0 1 1 1 1 1 1391.1 14192 822 14009 21777 28357 28357 1 NEEDAAELVALAQAVNAR Unmodified 1882.9385 0.93846896 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4.5 0.5 2 2 74.464 74.464 2;3 1.0468E-18 23879 TMT1-3 136.14 125.91 131.54 166.94 112.2 148.89 154.52 174.68 124 167 117 145 160 168 4 4 3 4 4 4 110640 14193 845 14010 21778;21779;21780;21781 28358;28359;28360;28361 28358 4 NEEILNSLK Unmodified 1058.5608 0.56078914 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 55.341 55.341 2 9.2055E-05 16103 TMT1-5 118.4 56.724 122.53 212.75 145.25 131.01 186.79 172.69 116 210 152 131 190 167 1 1 1 1 1 1 53753 14194 528 14011 21782;21783 28362;28363 28363 2 NEEVLAVLGHELGHWK Unmodified 1829.9424 0.94243213 306 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 0 7 0 1 68.131 68.131 4 6.2088E-09 20662 TMT1-6 111.33 83.676 84.808 85.157 101.25 80.265 60.628 107 80 87 102 80 65 102 1 1 1 1 1 1 10001 14195 306 14012 21784 28364 28364 1 NEFIGLQLLDVLAR Unmodified 1599.8984 0.89844205 1916 Q27J81;Q27J81-2;Q27J81-3 INF2 Inverted formin-2 yes no 0 0 0 0 0 8 0 1 92.187 92.187 3 2.82E-17 29890 TMT1-7 150.34 111.54 69.041 63.425 64.594 35.515 57.226 52.733 65 65 65 37 58 51 2 2 2 2 2 2 28751 14196 1916 14013 21785 28365;28366 28366 2 NEFNLESK Unmodified 979.46108 0.4610751 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 4.5 0.5 1 1 48.135 48.135 2 2.5332E-25 13525 TMT1-3 179.37 83.463 764.44 923.28 942.76 751.12 835.74 1158.3 722 931 957 753 870 1109 2 2 2 2 2 2 130630 14197 1880 14014 21786;21787 28367;28368;28369 28367 3 NEGVSSVLLGASNADQLMENIGAIQVLPK Unmodified 2966.5383 0.53828615 1691 Q13303-4;Q13303-2;Q13303;Q13303-3 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 0 7 0 1 90.266 90.266 5 5.6111E-06 29197 TMT1-6 58.08 45.526 31.963 28.465 14.076 6.4044 21.677 30.295 30 29 15 7 22 29 1 1 1 1 1 1 3896.6 14198 1691 14015 21788 28370 28370 1 NEHNSILQSLLETLK Unmodified 1737.9261 0.92611336 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 8 0 1 77.102 77.102 3 0.00018922 24256 TMT1-7 58.98 42.314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14199 1613 14016 21789 28371 28371 1 NEIDYLNK Unmodified 1007.4924 0.49237523 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 4.5 0.5 1 1 50.554 50.554 2 0.00014048 14461 TMT1-3 154.28 59.181 631.26 821.75 870.51 654.76 841.51 997.22 597 826 880 661 866 958 3 3 3 3 3 3 95590 14200 733 14017 21790;21791 28372;28373;28374 28372 3 NEIQDLQTK Unmodified 1087.551 0.55095274 993 P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes yes 0 0 0 0 0 4 0 1 44.906 44.906 3 0.00019381 12261 TMT1-3 125.75 54.367 107.39 294.4 95.53 94.35 143.49 112.1 102 285 109 94 145 109 1 1 1 1 1 1 8888.6 14201 993 14018 21792 28375 28375 1 NEIVFPAGILQAPFYTR Unmodified 1935.0254 0.025433475 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 8 0 1 82.427 82.427 3 0.0023408 26227 TMT1-7 56.719 53.057 54.388 34.178 27.415 36.782 49.582 60.413 51 36 29 36 51 58 1 1 1 1 1 1 41241 14202 1106 14019 21793 28376 28376 1 NELEIPGQYDGR Unmodified 1389.6525 0.6524577 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 2 0 1 51.312 51.312 2 0.00077599 15434 TMT1-1 69.864 42.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14203 1507 14020 21794 28377 28377 1 NELESYAYSLK Unmodified 1315.6296 0.62959699 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 4 2.16 1 1 1 61.297 61.297 3 1.7545E-07 15357 TMT 1-phospho 106.49 70.815 637.81 836.74 838.22 702.71 718.97 937.82 603 840 853 701 749 899 3 3 3 3 3 3 117870 14204 640 14021 21795;21796;21797 28378;28379;28380;28381 28378 4 NELSGALTGLTR Unmodified 1230.6568 0.65681479 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 55.963 55.963 2 0.0029655 16491 TMT1-5 83.226 38.831 155.1 326.36 346.17 297.3 471.61 489.69 148 322 351 299 480 472 1 1 1 1 1 1 25318 14205 902 14022 21798 28382 28382 1 NENKPYLFYFNIVK Unmodified 1787.9247 0.9246568 2139 Q8IWA5-3;Q8IWA5;Q8IWA5-2 SLC44A2 Choline transporter-like protein 2 yes no 0 0 0 0 1 9 0 2 69.713 69.713 3;4 0.00098922 19604 TMT1-8 63.134 23.286 122.89 136.04 149.84 131.19 162.96 165.91 116 138 152 131 167 160 2 2 2 2 2 2 17072 14206 2139 14023 21799;21800 28383;28384 28383 2 NENLAANFLLQQNFDED Unmodified 1993.9017 0.9017491 1302 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 0 4.5 0.5 1 1 82.724 82.724 3 4.5001E-06 27090 TMT1-3 88.992 87.421 38.853 82.35 72.651 51.188 70.101 83.28 37 81 74 52 72 80 3 3 3 3 3 3 24860 14207 1302 14024 21801;21802 28385;28386;28387;28388 28386 4 NENLAANFLLSQNFDDE Unmodified 1952.8752 0.8752 1301 P54725;P54725-3;P54725-2 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 0 4.5 0.5 1 1 83.766 83.766 3 8.5755E-05 27505 TMT1-3 77.359 66.892 30.849 28.426 20.958 22.122 35.87 22.428 29 29 22 22 36 22 1 1 1 1 1 1 8432.2 14208 1301 14025 21803;21804 28389;28390 28389 2 NENQLIIFADDTYPR Unmodified 1807.8741 0.87407779 1850 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 4 0 1 67.509 67.509 3 0.0033405 21081 TMT1-3 61.127 43.21 61.375 87.251 70.504 65.94 47.984 67.921 58 87 73 65 51 65 1 1 1 1 1 1 11891 14209 1850 14026 21805 28391 28391 1 NENTFLDLTVQQIEHLNK Unmodified 2155.0909 0.090946857 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6 0 2 75.263 75.263 3;4 2.973E-07 24043 TMT1-5 91.401 74.735 107.16 106.84 113.99 102.59 111.94 136.45 101 109 116 102 116 131 2 2 2 2 2 2 59796 14210 1910 14027 21806;21807 28392;28393 28392 2 NEPQNATGAPGR Unmodified 1210.5691 0.56906242 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 2.5 0.5 1 1 25.228 25.228 2 5.5376E-10 5180 TMT1-1 155.33 126.42 31.839 32.437 31.567 45.618 31.502 26.817 30 33 33 44 33 26 2 2 2 2 2 2 5865.8 14211 1236 14028 21808;21809 28394;28395 28394 2 NEQDAYAINSYTR Unmodified 1543.6903 0.69029976 878 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 0 3 0 1 44.25 44.25 2 2.0057E-16 12991 TMT1-2 176.99 156.96 46.517 81.179 48.09 44.6 33.26 68.341 44 80 51 44 36 65 1 1 1 1 1 1 13130 14212 878 14029 21810 28396 28396 1 NEQESAVHPR Unmodified 1165.5476 0.54759869 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 2 0 1 21.035 21.035 3 0.011872 3639 TMT1-1 62.466 37.957 16.025 13.815 0 7.3723 14.817 15.567 15 14 0 7 15 15 1 1 0 1 1 1 1117.2 14213 2887 14030 21811 28397 28397 1 NEQLDWPYEYLKPSCIENSVTI Unmodified 2697.2632 0.2632335 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 5.67 0.471 1 2 82.251 82.251 3 0.00033512 26802 TMT1-5 53.059 47.458 46.582 57.616 57.112 68.11 33.19 69.409 44 58 59 66 37 66 2 2 2 2 2 2 26331 14214 772 14031 21812;21813;21814 28398;28399;28400 28400 3 NEQPVLVLAQWLPSLPTAELR Unmodified 2373.3056 0.30563108 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8.5 0.5 1 1 93.553 93.553 3 7.1788E-06 30491 TMT1-7 74.444 64.864 15.897 36.73 30.052 12.814 52.207 46.48 15 36 30 14 52 45 1 3 2 2 3 3 6449.5 14215 2061 14032 21815;21816 28401;28402;28403 28402 3 NESCSENYTTDFIYQLYSEEGK Unmodified 2676.1174 0.11735712 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 4.5 0.5 1 1 77.157 77.157 3;4 1.5405E-13 24622 TMT1-4 103.31 96.588 122.85 143.49 149.75 147.48 110.68 113.04 116 145 153 145 116 109 2 2 2 2 2 2 21138 14216 1559 14033 21817;21818 28404;28405 28405 2 NESSFASHK Unmodified 1005.4516 0.45157304 2392 Q96DB5;Q96DB5-3;Q96DB5-2 RMDN1 Regulator of microtubule dynamics protein 1 yes no 0 0 0 0 0 5 0 1 29.86 29.86 3 0.0054139 6048 TMT1-4 74.849 60.55 54.097 57.115 56.79 50.872 79.041 67.035 51 58 58 51 80 65 1 1 1 1 1 1 3102.6 14217 2392 14034 21819 28406 28406 1 NETGGGEGIEVLK Unmodified 1301.6463 0.64630969 1166 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 0 3 0 1 50.388 50.388 3 4.0282E-05 15416 TMT1-2 100.11 45.336 76.682 177.86 126.12 102.41 82.644 106.37 73 174 131 102 87 102 1 1 1 1 1 1 11329 14218 1166 14035 21820 28407 28407 1 NETLGGTCLNVGCIPSK Unmodified 1818.8604 0.86041834 600 P09622;P09622-3 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 2 58.412 58.412 3;4 4.1689E-08 17455 TMT1-5 102.57 72.422 114.93 244.31 133.7 178.62 191.14 165.11 109 239 145 174 196 160 2 2 2 2 2 2 28166 14219 600 14036 21821;21822 28408;28409 28409 2 NEVAILQSLR Unmodified 1141.6455 0.64552182 2587 Q9BZL6-3;Q9BZL6;Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 yes no 0 0 0 0 0 6 0 1 58.965 58.965 2 0.0018853 17687 TMT1-5 69.721 40.572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14220 2587 14037 21823 28410 28410 1 NFAALLEEHDIFVPEDDDDDD Unmodified 2433.0132 0.013209626 2653 Q9H4I9 SMDT1 Essential MCU regulator, mitochondrial yes yes 0 0 0 0 0 3 0 1 85.902 85.902 3 0.0020859 28869 TMT1-2 50.397 47.062 7.4662 0 7.5364 0 0 7.462 7 0 7 0 0 7 1 0 1 0 0 1 2595.2 14221 2653 14038 21824 28411 28411 1 NFALLGVGTSK Unmodified 1105.6132 0.61315906 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 9 0 1 62.68 62.68 3 1.4072E-05 16782 TMT1-8 94.616 64.362 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14222 2 14039 21825 28412 28412 1 NFAQIIEADEVLLFER Unmodified 1905.9836 0.98362824 2078 Q7L523 RRAGA Ras-related GTP-binding protein A yes yes 0 0 0 0 0 5 0 1 92.377 92.377 3 4.8063E-06 30547 TMT1-4 90.714 81.713 23.372 21.48 21.065 29.916 27.925 30.117 22 22 22 29 29 29 1 1 1 1 1 1 2562.8 14223 2078 14040 21826 28413 28413 1 NFATSLYSMIK Unmodified 1273.6377 0.63765925 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 9 0 1 73.049 73.049 3 3.8564E-09 20852 TMT1-8 143.17 60.164 107.5 241.82 121.5 116.52 161.07 240.58 102 236 131 116 167 230 1 1 1 1 1 1 29804 14224 578 14041 21827 28414 28414 1 NFDDATMK Unmodified 940.39603 0.396032 2463 Q99439 CNN2 Calponin-2 yes yes 0 0 0 0 0 5 0 1 45.046 45.046 2 0.0034465 12018 TMT1-4 131.44 93.201 193.95 456.21 378.18 249.59 233.78 625.47 185 447 386 253 255 593 1 1 1 1 1 1 37309 14225 2463 14042 21828 28415 28415 1 NFDEILR Unmodified 905.46068 0.46068117 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 3 2 1 1 54.651 54.651 2 0.0018084 15772 TMT1-4 145.34 110.09 1124.3 1546.4 1423.5 982.06 1329.5 1670.9 1063 1547 1447 999 1369 1603 3 3 3 3 3 3 373800 14226 945 14043 21829;21830 28416;28417;28418 28418 3 NFDFEDVFVK Unmodified 1258.587 0.58700389 1906 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 0 6 0 2 75.178 75.178 2;3 0.0077334 24017 TMT1-5 66.289 32.328 161.52 164.7 125.47 125.26 148.32 173.79 152 167 131 124 153 167 2 2 2 2 2 2 22928 14227 1906 14044 21831;21832 28419;28420 28419 2 NFDLRPGVIVR Unmodified 1284.7303 0.73025451 973 P31153;P31153-2;Q00266 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 0 0 0 0 1 8 0 1 50.78 50.78 3 0.023995 13928 TMT1-7 58.476 34.387 84.86 124.16 59.511 66.055 76.73 114 80 123 65 65 80 109 1 1 1 1 1 1 6947.3 14228 973 14045 21833 28421 28421 1 NFDVDGDGHISQEEFQIIR Unmodified 2218.0291 0.029074882 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 3.5 0.5 1 1 61.658 61.658 3 1.5873E-17 18776 TMT1-3 122.16 119.51 99.474 123.07 129.01 84.583 149.89 182.27 94 124 130 87 153 175 2 2 2 2 2 2 52338 14229 2085 14046 21834;21835 28422;28423 28423 2 NFDVGHVPIR Unmodified 1152.604 0.60399136 1227 P50579-3;P50579-2;P50579 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 0 6 0 1 44.673 44.673 3 0.0011648 12059 TMT1-5 90.05 54.782 61.533 63.948 63.598 58.02 84.173 121.25 58 65 65 58 87 116 1 1 1 1 1 1 9356.5 14230 1227 14047 21836 28424 28424 1 NFEDVAFDEK Unmodified 1212.5299 0.52988294 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 3.25 0.829 1 1 2 58.449 58.449 2;3 1.1393E-09 17502 TMT1-3 175.86 86.913 520.88 722.48 570.61 513.68 634.31 762.21 492 721 591 512 654 732 3 3 3 3 3 3 220810 14231 530 14048 21837;21838;21839;21840 28425;28426;28427;28428 28428 4 NFEDVAFDEKK Unmodified 1340.6248 0.62484596 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 5.33 0.471 2 1 52.648 52.648 3;4 0.00041308 15066 TMT1-4 92.925 70.451 552.57 1237.5 759.48 652.89 827.78 1125.5 525 1210 800 653 857 1078 3 3 3 3 3 3 103090 14232 530 14049 21841;21842;21843 28429;28430;28431 28430 3 NFEVEADDLVTISELGR Unmodified 1905.932 0.9319866 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 4 0 1 77.829 77.829 2 0.024286 25216 TMT1-3 52.816 29.937 7.385 6.6909 15.503 6.4672 13.811 15.596 7 7 15 7 14 15 1 1 1 1 1 1 1903.5 14233 1130 14050 21844 28432 28432 1 NFFNPPIISR Unmodified 1203.64 0.64004252 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 9 0 1 63.057 63.057 3 0.0019471 16986 TMT1-8 75.652 54.083 46.694 42.818 50.795 35.515 42.824 45.682 44 44 51 36 44 44 1 1 1 1 1 1 12935 + 14234 666;31 14051 21845 28433 28433 1 NFFTDVYDLYIK Unmodified 1536.75 0.75004648 616 P0DI82;P0DI81;P0DI81-3 TRAPPC2B;TRAPPC2 Trafficking protein particle complex subunit 2B;Trafficking protein particle complex subunit 2 yes no 0 0 0 0 0 8 0 1 85.459 85.459 3 0.00073943 27394 TMT1-7 79.492 51.843 30.814 35.884 20.496 22.435 20.684 37.786 29 36 22 22 22 36 1 1 1 1 1 1 4745.5 14235 616 14052 21846 28434 28434 1 NFGDQPDIR Unmodified 1060.4938 0.49377221 1850 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 0 4 0 1 41.508 41.508 2 0.0036596 10920 TMT1-3 69.915 24.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14236 1850 14053 21847 28435 28435 1 NFGIGQDIQPK Unmodified 1215.6248 0.62478638 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 7 0 1 53.642 53.642 2 2.333E-06 14961 TMT1-6 103.31 70.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14237 1438 14054 21848 28436 28436 1 NFGIWLR Unmodified 904.49192 0.49192172 1568 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 0 9 0 1 63.576 63.576 2 0.032613 17143 TMT1-8 88.029 36.456 130.12 183.31 157 100.32 96.321 167.81 123 183 160 102 102 160 1 1 1 1 1 1 19309 14238 1568 14055 21849 28437 28437 1 NFHAFYQLLR Unmodified 1307.6775 0.67749065 20 B0I1T2;B0I1T2-4;B0I1T2-3 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 9 0 1 59.656 59.656 3 0.00024498 15557 TMT1-8 103.88 78.582 37.694 104.85 68.16 97.539 60.64 83.55 36 102 73 94 65 80 1 1 1 1 1 1 14984 14239 20 14056 21850 28438 28438 1 NFHFHDWK Unmodified 1129.5094 0.50936269 933 P29122-2;P29122-8;P29122;P29122-7 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 8 0 1 43.924 43.924 4 0.0013083 11171 TMT1-7 101.64 61.642 123.26 113.34 106.32 94.278 113.13 112.97 116 116 109 94 116 109 1 1 1 1 1 1 12324 14240 933 14057 21851 28439 28439 1 NFIAQGPYENR Unmodified 1307.6258 0.62584901 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 5 0 1 46.367 46.367 2 4.0451E-06 12566 TMT1-4 128.81 72.609 69.011 71.976 62.352 74.346 91.814 90.122 65 73 65 73 94 87 1 1 1 1 1 1 9719.3 14241 828 14058 21852 28440 28440 1 NFIDIQFPK Unmodified 1120.5917 0.59169534 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 8 0 1 69.744 69.744 2 9.2038E-06 21354 TMT1-7 158.87 96.912 176.68 277.57 186.72 175.37 195.72 249.19 167 275 196 174 203 239 2 2 2 2 2 2 34484 14242 300 14059 21853 28441;28442 28441 2 NFIEGDYK Unmodified 984.45526 0.45526144 2984 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 0 5 0 1 51.165 51.165 2 0.0038701 14461 TMT1-4 129.1 99.289 256.43 333.72 260.96 245.79 226.36 298.42 242 334 271 243 237 286 1 1 1 1 1 1 26530 14243 2984 14060 21854 28443 28443 1 NFILDQCNVYNSGQR Unmodified 1826.837 0.83698078 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 6 0 1 56.114 56.114 3 1.0947E-06 16570 TMT1-5 103.39 91.079 53.947 80.441 62.272 66.442 47.412 83.927 51 80 65 65 51 80 1 1 1 1 1 1 9582.6 14244 1915 14061 21855 28444 28444 1 NFILDQTNVSAAAQR Unmodified 1646.8376 0.8376327 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 6.5 0.5 1 1 55.678 55.678 3 9.9842E-11 15752 TMT1-6 122.66 105.43 269.35 470.22 317.79 314.94 379.21 476.34 255 464 334 312 392 457 4 4 4 4 4 4 97225 14245 1545 14062 21856;21857 28445;28446;28447;28448 28447 4 NFINNPLAQADWAAK Unmodified 1671.8369 0.83690442 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 7 2.71 1 4 1 69.508 69.508 2;3;4 2.4504E-53 21255 TMT1-7 221.55 189.02 1487 1889.3 1853.8 1384.1 1835.4 1904.8 1405 1899 1882 1399 1878 1836 7 7 7 7 7 7 829100 14246 1019 14063 21858;21859;21860;21861;21862;21863 28449;28450;28451;28452;28453;28454;28455;28456 28454 8 NFIQYFHK Unmodified 1095.5502 0.55016488 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 9 0 1 56.46 56.46 3 0.0010486 14338 TMT1-8 102.46 74.6 185.46 266.73 162.74 168.46 232.21 262.01 175 265 173 167 238 252 1 1 1 1 1 1 18663 14247 2953 14064 21864 28457 28457 1 NFITAEELR Unmodified 1091.5611 0.56112349 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4.5 0.5 1 1 52.662 52.662 2 1.3622E-05 15000 TMT1-4 154.81 87.319 301.7 452.45 486.29 317.47 408.12 392.37 286 452 489 324 417 379 2 2 2 2 2 2 91078 14248 195 14065 21865;21866 28458;28459 28459 2 NFIVWLEDQK Unmodified 1290.6608 0.66083754 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 7 0 2 78.594 78.594 2;3 0.00016284 24710 TMT1-6 132.78 109.4 76.245 69.613 110.9 55.623 61.761 106.97 72 72 109 58 65 102 2 2 2 2 2 2 40824 14249 2947 14066 21867;21868 28460;28461 28460 2 NFLELTELK Unmodified 1105.6019 0.60192568 2341 Q93050-1;Q93050;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 0 7 0 1 71.113 71.113 2 0.0008584 21842 TMT1-6 127.76 65.803 68.837 86.603 79.157 41.752 86.24 82.819 65 87 80 44 87 80 1 1 1 1 1 1 7791 14250 2341 14067 21869 28462 28462 1 NFLINYYNR Unmodified 1215.6037 0.60365701 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 9 0 1 58.671 58.671 2 0.0064286 15211 TMT1-8 98.009 56.98 77.475 86.165 70.539 64.81 107.96 89.661 73 87 73 65 109 87 1 1 1 1 1 1 8144.8 14251 3038 14068 21870 28463 28463 1 NFLSAVK Unmodified 777.43849 0.43848916 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 9 0 1 54.327 54.327 2 0.0074872 13490 TMT1-8 136.16 30.587 642.44 1443 1530.9 1120.1 1321.5 1567.7 614 1421 1544 1131 1364 1506 3 3 3 3 3 3 79767 14252 2849 14069 21871 28464;28465;28466 28465 3 NFLSTPQFLYR Unmodified 1384.7139 0.71393574 2542 Q9BUN8-2;Q9BUN8 DERL1 Derlin-1 yes no 0 0 0 0 0 9 0 1 67.072 67.072 2 0.00075421 18516 TMT1-8 94.791 56 53.837 103.88 60.894 65.814 85.133 82.851 51 102 65 65 87 80 1 1 1 1 1 1 10343 14253 2542 14070 21872 28467 28467 1 NFLVEEEQR Unmodified 1162.5619 0.56185177 793 P19474 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes yes 0 0 0 0 0 3 0 1 47.799 47.799 2 0.024697 14389 TMT1-2 76.143 69.014 68.943 86.898 61.112 82.082 91.202 97.602 65 87 65 80 94 94 1 1 1 1 1 1 6647.5 14254 793 14071 21873 28468 28468 1 NFLYAWCGK Unmodified 1157.5328 0.53280025 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 9 0 1 66.145 66.145 2 0.0017289 18177 TMT1-8 117.04 77.888 46.314 95.728 69.717 73.907 91.834 90.121 44 94 73 73 94 87 1 1 1 1 1 1 11204 14255 1619 14072 21874 28469 28469 1 NFNETFLK Unmodified 1011.5025 0.50254598 2566 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 0 0 7 0 1 56.718 56.718 2 0.006302 16179 TMT1-6 72.042 54.529 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14256 2566 14073 21875 28470 28470 1 NFPNAIEHTLQWAR Unmodified 1695.8481 0.84813781 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 8 0 1 60.951 60.951 3 5.6949E-06 17893 TMT1-7 101.43 55.564 238.95 264.77 191.96 165.07 320.08 296.81 225 267 200 167 323 287 1 1 1 1 1 1 95782 14257 845 14074 21876 28471 28471 1 NFSAGGHK Unmodified 816.38785 0.38785057 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 8 1 1 1 28.958 28.958 3 0.0010315 4634 TMT1-8 100.57 54.687 184.9 179.71 151.32 129.23 145.97 175.99 174 183 156 129 151 169 3 3 3 3 3 3 43054 14258 2959 14075 21877;21878 28472;28473;28474 28473 3 NFSDNQLQEGK Unmodified 1278.584 0.58404378 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 4 1.41 1 2 3 44.19 44.19 2;3;4 5.8084E-83 11630 TMT1-4 263.3 195.28 4256.6 5654.4 4770.4 4051.2 4557 5772.4 4020 5659 4909 4045 4724 5537 7 7 7 7 7 7 1463400 14259 1052 14076 21879;21880;21881;21882;21883;21884 28475;28476;28477;28478;28479;28480;28481 28479 7 NFSGKDDIQALDIFLANLPEAK Unmodified 2418.2431 0.2430904 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 1 8 0 1 86.283 86.283 4 8.6569E-05 27714 TMT1-7 63.184 49.996 30.674 35.494 44.394 20.872 28.085 37.575 29 36 44 22 29 36 1 1 1 1 1 1 6614.8 14260 1999 14077 21885 28482 28482 1 NFSNFCNVDVVEILPYLPCLTAR Unmodified 2740.3353 0.335293 2092 Q7Z434;Q7Z434-2;Q7Z434-5;Q7Z434-6;Q7Z434-3 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 0 8 0 1 92.793 92.793 3 5.8011E-05 30094 TMT1-7 62.781 54.421 7.3917 11.027 10.704 11.196 10.05 27.429 7 11 11 11 11 26 1 1 1 1 1 1 3932.6 14261 2092 14078 21886 28483 28483 1 NFSVNLYK Unmodified 983.50763 0.50763136 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 0 8.5 0.5 1 1 56.646 56.646 2 0.0067174 14407 TMT1-8 98.033 57.046 146.1 203.48 159.42 186.99 129.26 189.26 138 203 167 182 138 181 2 2 2 2 2 2 17012 14262 3023 14079 21887;21888 28484;28485 28485 2 NFTKPQDGDVIAPLITPQK Unmodified 2081.1157 0.11570504 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 8 0 2 62.549 62.549 4;5 5.9174E-05 18594 TMT1-7 68.567 44.267 191.3 284.05 248.81 179.73 232.39 302.51 181 283 254 182 240 290 3 3 3 3 3 3 32631 14263 3006 14080 21889;21890 28486;28487;28488 28487 3 NFTKPQDGDVIAPLITPQKK Unmodified 2209.2107 0.21066806 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 2 9 0 1 57.857 57.857 4 7.3248E-05 14901 TMT1-8 59.983 43.267 84.893 116.69 60.289 58.627 62.429 83.499 80 116 65 58 65 80 1 1 1 1 1 1 11017 14264 3006 14081 21891 28489 28489 1 NFTLDMI Unmodified 852.40514 0.40514012 626 P10155 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 0 0 0 0 0 6 0 1 78.694 78.694 2 0.020018 25446 TMT1-5 97.596 76.068 30.882 20.962 21.73 14.828 14.474 15.577 29 22 22 15 15 15 1 1 1 1 1 1 3102.7 14265 626 14082 21892 28490 28490 1 NFVDSCLQK Unmodified 1109.5175 0.51754412 2082 Q7L7X3;Q7L7X3-3;Q9UL54-2;Q9UL54-4;Q9UL54;Q7L7X3-2;Q9UL54-3 TAOK1;TAOK2 Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO2 yes no 0 0 0 0 0 6 0 1 50.555 50.555 3 0.032443 14346 TMT1-5 50.834 17.888 620.72 722.27 562.59 561.1 578.95 909.83 585 727 586 554 608 869 1 1 1 1 1 1 8839.4 14266 2082 14083 21893 28491 28491 1 NFVGDYLGLEERPELR Unmodified 1905.9585 0.95847612 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 1 5 0 1 63.044 63.044 3 2.2006E-08 19097 TMT1-4 108.18 80.848 130.59 143.61 111.31 110.56 103.47 159.08 123 145 116 109 109 152 1 1 1 1 1 1 24992 14267 44 14084 21894 28492 28492 1 NFVVVMVTK Unmodified 1035.5787 0.57868781 1302;1301 P54727;P54725;P54725-3;P54725-2 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A no no 0 0 0 0 0 9 0 1 64.935 64.935 2 0.0014731 17682 TMT1-8 123.86 89.607 68.512 148.3 81.612 73.616 69.603 98.218 65 145 87 73 73 94 1 1 1 1 1 1 7455 14268 1302;1301 14085 21895 28493 28493 1 NFVVVMVTKPK Unmodified 1260.7264 0.72641468 1302 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 0 1 9 0 1 58.752 58.752 3 3.0405E-07 15204 TMT1-8 127.78 89.755 176.89 252.23 173.67 138.06 128.8 268.15 167 251 181 138 138 255 1 1 1 1 1 1 25820 14269 1302 14086 21896 28494 28494 1 NFWVSGLSSTTR Unmodified 1353.6677 0.66771383 1853 Q15424-2;Q15424;Q15424-4;Q15424-3 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 0 9 0 1 59.633 59.633 2 2.5988E-05 15579 TMT1-8 107.12 60.66 38.175 58.697 26.383 28.747 73.242 52.276 36 58 29 29 73 51 1 1 1 1 1 1 8250.2 14270 1853 14087 21897 28495 28495 1 NFYDSPEK Unmodified 998.43453 0.434526 190 O43674-2;O43674 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 0 0 0 0 0 5 0 1 44.047 44.047 2 0.00053607 11653 TMT1-4 116.37 76.103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14271 190 14088 21898 28496 28496 1 NFYQEHPDLAR Unmodified 1388.6473 0.64731274 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 4 0 1 39.63 39.63 3 0.0002227 10154 TMT1-3 99.732 81.275 77.081 132.56 97.401 103.74 102.98 182.55 73 131 102 102 109 174 1 1 1 1 1 1 26457 14272 764 14089 21899 28497 28497 1 NFYVEHPEVAR Unmodified 1359.6571 0.65714914 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 4 0 1 40.5 40.5 3 0.0029805 10489 TMT1-3 74.987 27.385 253.5 342.3 205.25 197.76 225.06 248.35 239 341 218 196 232 239 2 2 2 2 2 2 34363 14273 2321 14090 21900 28498;28499 28498 2 NGDLDEVK Unmodified 888.41888 0.41887593 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 0 2.5 0.5 1 1 40.671 40.671 2 0.014679 11269 TMT1-1 93.649 63.079 176.52 254.46 233.01 211.66 269.65 271.6 167 254 239 211 276 262 2 2 2 2 2 2 23481 14274 1347 14091 21901;21902 28500;28501 28500 2 NGDLDEVKDYVAK Unmodified 1464.7096 0.70963822 1347 P58546 MTPN Myotrophin yes yes 0 0 0 0 1 4.67 0.471 1 2 55.103 55.103 3;4 1.4656E-08 15967 TMT1-4 126.48 99.773 1682 1786.4 1811.3 1459.4 1568.2 2152.3 1586 1814 1841 1461 1634 2061 3 3 3 3 3 3 158320 14275 1347 14092 21903;21904;21905 28502;28503;28504 28504 3 NGFLLDGFPR Unmodified 1134.5822 0.58219329 1303 P54819-2;P54819;P54819-3;P54819-5;P54819-6;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 8 0 1 65.687 65.687 2 0.00072701 19784 TMT1-7 81.099 59.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14276 1303 14093 21906 28505 28505 1 NGFLNLALPFFGFSEPLAAPR Unmodified 2277.1946 0.19462407 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 9 0 1 99.029 99.029 3 2.5765E-10 30621 TMT1-8 84.499 68.193 39.347 36.234 28.77 29.58 21.403 7.279 37 37 30 29 22 7 2 2 2 2 2 1 11906 14277 845 14094 21907 28506;28507 28506 2 NGFVVLK Unmodified 775.45922 0.4592246 1477 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 0 9 0 1 53.787 53.787 2 0.007053 13294 TMT1-8 107.66 66.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14278 1477 14095 21908 28508 28508 1 NGGQILIADLR Unmodified 1168.6564 0.65642086 1322 P55735-2;P55735;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 0 6 0 1 55.997 55.997 2 0.0074718 16516 TMT1-5 56.632 24.022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14279 1322 14096 21909 28509 28509 1 NGHVGISFVPK Unmodified 1153.6244 0.62439245 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8.5 0.5 1 1 45.702 45.702 3 3.8807E-05 11832 TMT1-7 108.35 72.837 2347.5 3466 3224.9 2681.6 3353.2 3792 2222 3457 3294 2687 3448 3647 3 3 3 3 3 3 150940 14280 831 14097 21910;21911 28510;28511;28512 28510 3 NGLSLAALK Unmodified 885.52837 0.5283668 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 0 8 0 1 57.584 57.584 2 0.0050696 16562 TMT1-7 98.048 27.136 84.501 123.16 120.73 102.03 120.36 105.3 80 123 123 102 123 102 1 1 1 1 1 1 14933 14281 743 14098 21912 28513 28513 1 NGLSLAALKK Unmodified 1013.6233 0.62332982 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 1 9 0 1 51.913 51.913 3 0.0090437 12535 TMT1-8 75.566 22.629 234.62 599.89 275.28 224.14 227.59 261.07 223 583 298 224 236 251 1 1 1 1 1 1 19122 14282 743 14099 21913 28514 28514 1 NGNLPEFGDAISTASK Unmodified 1619.7791 0.77911477 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.33 0.471 2 1 59.14 59.14 2;3 2.6936E-19 17577 TMT1-4 158.02 126.95 603.5 640.2 640.72 571.46 477.92 794.39 569 650 654 566 501 758 4 4 4 4 3 4 215890 14283 3010 14100 21914;21915;21916 28515;28516;28517;28518 28515 4 NGPALQEAYVR Unmodified 1216.62 0.62003536 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 0 4 0 1 42.125 42.125 2 0.0030681 11211 TMT1-3 90.913 54.22 68.672 125 74.424 96.303 106.51 89.703 65 123 80 94 109 87 1 1 1 1 1 1 22594 14284 2887 14101 21917 28519 28519 1 NGPLEVAGAAVSAGHGLPAK Unmodified 1814.9639 0.96389585 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 7 0 1 55.534 55.534 3 7.6896E-36 15738 TMT1-6 160.67 133.17 53.853 80.181 78.202 73.534 84.778 82.861 51 80 80 73 87 80 1 1 1 1 1 1 10534 14285 268 14102 21918 28520 28520 1 NGPVEGAFSVYSDFLLYK Unmodified 2004.9833 0.98329389 544 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 0 7.5 0.5 1 1 85.955 85.955 3 1.834E-06 27637 TMT1-6 89.261 73.377 69.909 78.972 85.781 73.229 76.95 98.008 66 80 87 73 80 94 2 2 2 2 2 2 5718.3 14286 544 14103 21919;21920 28521;28522;28523 28522 3 NGQDLGVAFK Unmodified 1047.5349 0.53490874 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 6 0 1 51.683 51.683 2 0.00017982 14780 TMT1-5 130.98 108.24 91.796 169.53 117.62 108.47 194.37 165.01 87 167 123 109 196 160 1 1 1 1 1 1 21276 14287 1545 14104 21921 28524 28524 1 NGQGFALVYSITAQSTFNDLQDLR Unmodified 2657.3085 0.30854421 1384;1447 P61224;P61224-3;A6NIZ1;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 0 7.86 0.639 2 4 1 86.826 86.826 3 2.7068E-37 27646 TMT1-7 148.66 121.63 69.864 142.16 61.106 81.247 77.519 101.19 66 139 66 79 81 97 5 6 5 6 6 6 47305 14288 1384;1447 14105 21922;21923;21924;21925;21926;21927;21928 28525;28526;28527;28528;28529;28530;28531;28532;28533;28534 28529 10 NGQVELNEFLQLMSAIQK Unmodified 2061.0565 0.056475607 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 93.148 93.148 4 0.0012538 30193 TMT1-7 54.288 39.034 15.855 21.975 21.757 14.555 28.888 22.628 15 22 22 15 29 22 1 1 1 1 1 1 2058.5 14289 1112 14106 21929 28535 28535 1 NGSLICTASK Unmodified 1049.5175 0.51754412 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 7 0 1 42.715 42.715 2 0.0017672 10625 TMT1-6 101.5 76.711 99.53 130.78 112.99 93.742 120.48 112.76 94 131 116 94 123 109 1 1 1 1 1 1 13868 14290 2913 14107 21930 28536 28536 1 NGVLEEAIIATILK Unmodified 1482.8657 0.86574494 2853 Q9UEW8-2;Q9UEW8 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 0 0 7 0 1 90.551 90.551 3 6.8439E-05 29274 TMT1-6 88.282 76.116 38.243 43.776 27.585 21.865 28.552 22.637 36 44 29 22 29 22 1 1 1 1 1 1 3243.1 14291 2853 14108 21931 28537 28537 1 NGVSEENLAK Unmodified 1059.5197 0.51965261 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 4 0 1 39.062 39.062 2 0.00023659 9938 TMT1-3 127.42 106.52 123.23 81.936 138.92 109.03 97.276 128.34 116 87 138 109 102 123 1 1 1 1 1 1 9766.5 14292 1878 14109 21932 28538 28538 1 NHAAPFSK Unmodified 870.4348 0.43480077 1009;2303 P34932;Q92598-2;Q92598-3;Q92598;Q92598-4 HSPA4;HSPH1 Heat shock 70 kDa protein 4;Heat shock protein 105 kDa no no 0 0 0 0 0 8 1 1 1 32.171 32.171 3 0.0071096 6468 TMT1-6 78.334 45.494 115.42 160.42 121.98 117.38 113.74 155.59 109 160 127 116 119 149 2 2 2 2 2 2 10940 14293 1009;2303 14110 21933;21934 28539;28540 28539 2 NHAVVCQGCHNAIDPEVQR Unmodified 2203.0011 0.0011027676 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 3.5 0.5 1 1 31.495 31.495 4 9.0608E-10 6891 TMT1-3 95.094 86.386 76.225 125.68 66.743 96.924 97.833 128.33 72 124 73 94 102 123 2 2 2 2 2 2 21976 14294 2857 14111 21935;21936 28541;28542 28542 2 NHIQLVK Unmodified 850.50249 0.5024864 2720 Q9NR28-2;Q9NR28-3;Q9NR28 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 36.892 36.892 3 0.0020431 8457 TMT1-6 107.66 46.697 214.83 250.93 289.45 208.2 216.7 264.58 203 254 291 210 225 254 2 2 2 2 2 2 15450 14295 2720 14112 21937;21938 28543;28544 28543 2 NHIVNVR Unmodified 850.47733 0.47733428 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 6 3.08 1 1 1 1 25.391 25.391 3 0.0051954 4647 TMT1-5 92.319 69.01 165.39 217.19 152.12 184.37 175.51 277.48 156 217 161 180 185 265 5 5 5 5 5 5 34962 14296 1684 14113 21939;21940;21941;21942 28545;28546;28547;28548;28549 28547 5 NHLLHVFDEYKR Unmodified 1569.8052 0.80521036 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 1 8 0 1 46.016 46.016 4 0.02397 12010 TMT1-7 49.423 34.547 475.39 577.43 584.09 557.13 721.85 835.4 449 582 597 554 742 803 1 1 1 1 1 1 17293 14297 598 14114 21943 28550 28550 1 NHQLEVTPK Unmodified 1064.5615 0.56145784 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 5 0 1 33.218 33.218 3 0.0077071 7330 TMT1-4 70.1 43.502 76.945 132.18 120.63 92.842 144.11 96.092 73 131 123 94 145 94 1 1 1 1 1 1 9431.5 14298 2630 14115 21944 28551 28551 1 NHSPLPPPQTNHEEPSR Unmodified 1935.9187 0.91873657 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 4 0 1 26.409 26.409 4 0.01632 5055 TMT1-3 42.382 40.803 46.945 28.406 20.871 22.275 28.014 37.765 44 30 22 22 29 36 2 2 2 2 2 1 1362 14299 1669 14116 21945 28552;28553 28553 2 NHTLALTETGSVFAFGENK Unmodified 2035.0011 0.0010692176 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 7 0 1 61.097 61.097 3 1.45E-06 17949 TMT1-6 80.362 65.434 38.133 58.579 33.604 36.841 26.801 53.601 36 58 36 36 29 51 1 1 1 1 1 1 10852 14300 2822 14117 21946 28554 28554 1 NIATYYGAFIK Unmodified 1259.655 0.65502388 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 0 9 0 1 66.999 66.999 3 4.9146E-07 18469 TMT1-8 121.02 67.549 146.22 196.25 145.83 161.81 174.87 234.86 138 196 153 159 182 225 2 2 2 2 2 2 14447 14301 2892 14118 21947 28555;28556 28555 2 NIAVGKDPLEGQR Unmodified 1395.747 0.74702678 46 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 1 6 0 1 45.171 45.171 3 0.00020732 12225 TMT1-5 91.307 70.077 207.07 369.48 230.57 180.93 284.1 318.09 196 364 242 183 290 306 1 1 1 1 1 1 23024 14302 46 14119 21948 28557 28557 1 NICFTVWDVGGQDR Unmodified 1665.7569 0.75693954 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 7 0 1 69.012 69.012 3 8.1021E-06 21003 TMT1-6 100.11 71.832 46.607 42.577 65.608 43.373 43.012 29.687 44 44 65 44 44 29 1 1 1 1 1 1 17149 14303 774 14120 21949 28558 28558 1 NICQFLVEIGLAK Unmodified 1503.8119 0.81193523 1086 P41567 EIF1 Eukaryotic translation initiation factor 1 yes yes 0 0 0 0 0 9 0 2 88.947 88.947 2;3 0.00087121 27020 TMT1-8 68.809 45.204 84.711 124.82 84.023 73.571 122.47 81.785 80 124 88 74 123 80 2 2 2 2 2 2 15806 14304 1086 14121 21950;21951 28559;28560 28559 2 NICSLATIQK Unmodified 1146.6067 0.60669348 3019 Q9Y4P8-3;Q9Y4P8-2;Q9Y4P8-4;Q9Y4P8-5;Q9Y4P8-6;Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 yes no 0 0 0 0 0 8 0 1 54.504 54.504 3 0.0047772 15360 TMT1-7 73.499 61.231 99.718 100.01 107.56 86.975 90.683 106.14 94 102 109 87 94 102 1 1 1 1 1 1 7319.9 14305 3019 14122 21952 28561 28561 1 NICVLAHVDHGK Unmodified 1361.6874 0.68740341 2087 Q7Z2Z2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 41.43 41.43 4 0.00047563 10144 TMT1-6 82.543 67.004 77.239 116.81 84.201 56.92 77.407 106.52 73 116 87 58 80 102 1 1 1 1 1 1 4837.2 14306 2087 14123 21953 28562 28562 1 NIDDGTSDRPYSHALVAGIDR Unmodified 2271.088 0.087986745 1390 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 1 4.5 0.5 1 1 45.635 45.635 4 0.00014096 12554 TMT1-3 63.225 61.973 138.14 218.93 221.92 172.89 274.36 186.18 131 218 225 175 276 182 2 2 2 2 2 2 31695 14307 1390 14124 21954;21955 28563;28564 28563 2 NIDEHANEDVER Unmodified 1439.6277 0.62769951 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 1.5 0.5 1 1 29.834 29.834 3 5.2371E-11 7074 TMT1-1 161.48 134.94 171.07 214.46 101.83 126.23 172.06 181.64 161 214 112 124 176 175 3 3 3 3 3 3 51485 14308 1372 14125 21956;21957 28565;28566;28567 28567 3 NIDNPALADIYTEHAHQVVVAK Unmodified 2417.2339 0.2339227 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 5.5 0.5 2 2 55.738 55.738 4;5 1.691E-50 16173 TMT1-4 174.63 157.7 1502.2 2434.6 2079.6 1652.7 2179 2414.1 1423 2416 2132 1663 2235 2323 7 7 7 7 7 7 478210 14309 250 14126 21958;21959;21960;21961 28568;28569;28570;28571;28572;28573;28574 28568 7 NIDPKPCTPR Unmodified 1196.5972 0.59719142 2397 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 1 6 0 1 34.982 34.982 3 0.0052764 8198 TMT1-5 78.342 33.975 145.47 303.19 179.89 151.94 184.59 269.76 138 297 190 152 192 258 1 1 1 1 1 1 15973 14310 2397 14127 21962 28575 28575 1 NIEDVIAQGIGK Unmodified 1255.6772 0.67721588 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 0 5 2.35 1 2 1 69.096 69.096 2;3 1.3191E-08 21664 TMT1-5 146.16 76.492 363.89 598.09 370.82 374.65 349.15 510.24 344 591 393 369 367 488 5 5 5 5 5 5 170790 14311 495 14128 21963;21964;21965;21966 28576;28577;28578;28579;28580 28578 5 NIEEHASADVEK Unmodified 1340.6208 0.62082322 1366 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 0 2.5 0.5 1 1 36.302 36.302 3 5.4813E-11 9784 TMT1-2 161.21 96.655 528.55 747.43 702.34 509.57 609.72 783.17 500 747 714 515 631 751 4 4 4 4 4 4 67668 14312 1366 14129 21967;21968 28581;28582;28583;28584 28584 4 NIEEHASSDVER Unmodified 1384.6219 0.62188585 2333 Q92930 RAB8B Ras-related protein Rab-8B yes yes 0 0 0 0 0 3.67 1.25 1 1 1 28.842 28.842 3 9.5788E-05 6568 TMT1-1 98.942 70.659 69.672 117.17 93.258 48.283 101.1 98.385 66 116 95 51 102 95 2 2 2 2 2 2 20580 14313 2333 14130 21969;21970;21971 28585;28586;28587 28585 3 NIEIDSPYEISR Unmodified 1434.6991 0.69907354 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 56.529 56.529 2 2.0329E-10 17852 TMT1-2 162.93 100.29 208.12 321.85 275.07 217.54 230.97 263.11 197 320 282 218 239 253 3 3 3 3 3 3 76763 14314 478 14131 21972;21973 28588;28589;28590 28588 3 NIEKECNAK Unmodified 1104.5234 0.52335778 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 SF1 Splicing factor 1 yes no 0 0 0 0 1 5 0 1 32.561 32.561 3 0.039734 7104 TMT1-4 55.549 31.8 85.082 85.919 54.551 58.841 69.22 129.14 80 87 58 58 73 123 1 1 1 1 1 1 4393.5 14315 1866 14132 21974 28591 28591 1 NIELICQENEGENDPVLQR Unmodified 2269.0645 0.06447411 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 59.52 59.52 3 5.837E-31 18943 TMT1-2 150.9 137.05 100.77 131.19 83.942 64.977 114.73 105.46 95 131 88 66 116 102 3 3 3 3 3 3 88725 14316 1868 14133 21975;21976 28592;28593;28594 28594 3 NIETIINTFHQYSVK Unmodified 1805.9312 0.93119874 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 5 4 1 1 71.639 71.639 3 9.9207E-28 20039 TMT1-8 171.15 117.21 1053 1586.2 1112.2 903.37 1385.5 1301.5 995 1575 1158 911 1407 1258 4 4 4 4 4 4 273480 14317 509 14134 21977;21978 28595;28596;28597;28598 28596 4 NIEVPFKPAR Unmodified 1169.6557 0.65569258 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 1 8 0 1 49.644 49.644 3 5.466E-06 13464 TMT1-7 120.27 86.512 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14318 832 14135 21979 28599 28599 1 NIFWTDSNLDR Unmodified 1379.647 0.64697839 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 6.5 0.5 1 1 61.858 61.858 2 2.3545E-06 18807 TMT1-5 132.32 77.902 115.72 121.3 105.88 94.304 113.12 112.97 109 123 109 94 116 109 1 1 1 1 1 1 18697 14319 704 14136 21980;21981 28600;28601 28600 2 NIGDINQDGYPDIAVGAPYDDLGK Unmodified 2519.1816 0.18161236 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 4.5 0.5 2 2 72.985 72.985 3;4 3.3834E-13 23279 TMT1-3 97.352 90.477 322.79 427.11 389.5 335.95 313.64 347.09 305 428 399 334 326 334 5 5 5 5 5 5 86243 14320 856 14137 21982;21983;21984;21985 28602;28603;28604;28605;28606 28602 5 NIGGQIQEK Unmodified 985.51926 0.51925868 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 5 0 1 40.273 40.273 3 0.0047756 10155 TMT1-4 52.549 31.602 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14321 2642 14138 21986 28607 28607 1 NIGLGFK Unmodified 747.42792 0.42792448 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 0 9 0 1 54.98 54.98 2 0.012526 13627 TMT1-8 112.75 13.575 516.16 881.32 507.72 497.47 649.02 782.05 488 869 541 494 668 751 1 1 1 1 1 1 47542 14322 1428 14139 21987 28608 28608 1 NIGVDNPAAK Unmodified 997.51926 0.51925868 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 5 0 1 42.546 42.546 3 0.0045266 11065 TMT1-4 74.162 54.066 658.47 1318 925.6 811.08 898.4 1080.9 625 1295 965 808 930 1038 3 3 3 3 3 3 34328 14323 1504 14140 21988 28609;28610;28611 28609 3 NIHLHAHSLVGK Unmodified 1324.7364 0.73640252 798 P19838-2;P19838 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 8 0 1 35.156 35.156 4 0.012297 7786 TMT1-7 53.569 33.106 92.559 85.311 60.79 88.789 142.42 150.51 87 87 65 87 145 145 1 1 1 1 1 1 5480.2 14324 798 14141 21989 28612 28612 1 NIHLNLDR Unmodified 993.53558 0.53557744 3035 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 0 0 6 0 1 39.67 39.67 3 0.002257 10027 TMT1-5 97.635 34.155 68.52 117.02 106.71 86.611 112.71 135.36 65 116 109 87 116 130 1 1 1 1 1 1 15469 14325 3035 14142 21990 28613 28613 1 NIHQSVSEQIKK Unmodified 1409.7627 0.76267685 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 1 7 0 1 36.081 36.081 4 0.035794 8033 TMT1-6 44.616 31.989 99.383 153.04 118.86 102.04 125.84 189.36 94 152 123 102 131 181 1 1 1 1 1 1 9789.8 14326 1746 14143 21991 28614 28614 1 NIIGSSPVADFSAIK Unmodified 1517.809 0.80895834 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 8 0 1 68.76 68.76 3 0.00018078 20978 TMT1-7 78.326 51.228 230.92 305.93 244.34 173.31 239.08 238.36 218 306 251 176 244 230 1 1 1 1 1 1 27367 14327 1098 14144 21992 28615 28615 1 NIIGYFEQK Unmodified 1110.571 0.5709599 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 7.5 0.5 1 1 65.361 65.361 2;3 0.00028918 19594 TMT1-7 118.71 74.402 310.16 390.9 379.3 202.2 367.16 429.78 293 393 382 212 374 413 2 2 2 2 2 2 42761 14328 2521 14145 21993;21994 28616;28617 28617 2 NIIHGSDSVESAEK Unmodified 1484.7107 0.71070086 724 P15531;P15531-2 NME1 Nucleoside diphosphate kinase A yes no 0 0 0 0 0 4 0 1 38.287 38.287 3 7.651E-17 9647 TMT1-3 142.45 136.55 217.28 242.98 246.18 218.32 280.66 307.53 205 246 251 218 288 296 1 1 1 1 1 1 28618 14329 724 14146 21995 28618 28618 1 NIIHGSDSVK Unmodified 1068.5564 0.55637247 846 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 0 6 0 1 35.41 35.41 3 0.0001391 8324 TMT1-5 108.9 72.959 610.69 877.5 673.43 706.94 842.14 787.2 577 874 703 698 862 761 2 2 2 2 2 2 107970 14330 846 14147 21996 28619;28620 28619 2 NIIIALIDR Unmodified 1039.639 0.63897988 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 8 0 1 74.114 74.114 2 0.00079986 23135 TMT1-7 128.6 98.099 77.402 102.15 69.167 74.068 85.01 75.392 73 102 73 73 87 73 1 1 1 1 1 1 23025 14331 2444 14148 21997 28621 28621 1 NIILEEGK Unmodified 914.5073 0.50729701 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 3.33 1.7 1 1 1 50.754 50.754 2 0.0026161 14483 TMT1-3 135.79 32.228 2274.7 3550.4 3307 2384.9 4398.4 3175.9 2155 3533 3362 2438 4414 3097 4 4 4 4 4 4 724690 14332 865 14149 21998;21999;22000 28622;28623;28624;28625 28623 4 NIILEEGKEILVGDVGQTVDDPYATFVK Unmodified 3061.5859 0.58594784 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 5.5 2.22 1 1 2 1 1 85.822 85.822 4;5 9.5109E-64 28064 TMT1-4 177.6 166.08 3273.3 4688.2 3393.8 2991.2 3383.3 4510.7 3091 4667 3535 2980 3514 4322 16 17 17 17 17 17 1280500 14333 865 14150 22001;22002;22003;22004;22005;22006 28626;28627;28628;28629;28630;28631;28632;28633;28634;28635;28636;28637;28638;28639;28640;28641;28642 28629 17 NIILGGVK Unmodified 812.51199 0.51198846 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 9 0 1 53.807 53.807 2 0.001579 13273 TMT1-8 141.78 31.419 339.8 504.28 351.1 314.76 399.86 423.52 321 501 367 314 410 408 1 1 1 1 1 1 62917 14334 845 14151 22007 28643 28643 1 NIIQLIINAYNSIR Unmodified 1643.9359 0.93589019 773 P18084 ITGB5 Integrin beta-5 yes yes 0 0 0 0 0 9 0 1 101.41 101.41 3 0.0064281 31573 TMT1-8 51.643 31.547 0 23.305 6.1758 0 7.0727 7.2602 0 22 7 0 7 7 0 1 1 0 1 1 940.74 14335 773 14152 22008 28644 28644 1 NIIQQAIDAGEVPSYNAFVK Unmodified 2176.1164 0.11643333 2286 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 0 7 0 2 78.549 78.549 3;4 4.9514E-06 24752 TMT1-6 77.391 54.738 77.47 78.595 77.837 81.203 84.976 66.865 73 80 80 80 87 65 2 2 2 2 2 2 14790 14336 2286 14153 22009;22010 28645;28646 28646 2 NIKPPFDLK Unmodified 1070.6124 0.61243078 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 8.5 0.5 1 1 54.475 54.475 3 0.011412 13487 TMT1-8 60.064 22.873 681.71 1020.2 699.19 657.15 734.52 1094.1 644 1013 733 652 767 1046 3 3 3 3 3 3 54731 14337 126 14154 22011;22012 28647;28648;28649 28648 3 NILDSKPTANKK Unmodified 1327.746 0.74596415 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 2 9 0 1 40.763 40.763 4 0.0021217 8362 TMT1-8 79.633 53.092 489.68 827.1 676 754.97 778.91 1163.2 464 819 704 741 816 1112 1 1 1 1 1 1 38454 14338 2913 14155 22013 28650 28650 1 NILEQINALTGTLFTSK Unmodified 1862.0149 0.014928368 2087 Q7Z2Z2;Q7Z2Z2-2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 94.787 94.787 3 0.0045715 29231 TMT1-8 47.088 26.135 11.654 18.206 9.5732 26.438 16.825 22.972 11 18 11 25 18 22 1 1 1 1 1 1 4213.6 14339 2087 14156 22014 28651 28651 1 NILFVITKPDVYK Unmodified 1548.8916 0.89156576 36 Q13765;E9PAV3-2;E9PAV3;Q9BZK3 NACA;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 0 0 0 0 1 9 0 1 69.339 69.339 3 4.243E-13 19465 TMT1-8 136.51 94.871 268.72 436.98 272.07 317.41 392.87 440.77 254 432 290 312 404 424 2 2 2 2 2 2 39568 14340 36 14157 22015 28652;28653 28653 2 NILGGTVFR Unmodified 975.55016 0.55016488 1164;307 P48735;P48735-2;O75874 IDH2;IDH1 Isocitrate dehydrogenase [NADP], mitochondrial;Isocitrate dehydrogenase [NADP] cytoplasmic no no 0 0 0 0 0 9 0 1 56.743 56.743 2 0.00014809 14455 TMT1-8 148.14 81.345 391.49 577 439.16 468.92 641.14 531.76 370 574 459 464 651 516 1 1 1 1 1 1 126720 14341 1164;307 14158 22016 28654 28654 1 NILGGTVFREPIICK Unmodified 1715.9393 0.939261 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 9 0 1 62.926 62.926 3 3.9613E-19 16876 TMT1-8 136.63 98.254 353.17 392.53 363.02 269.08 233.84 597.75 333 397 370 270 255 567 1 1 1 1 1 1 44007 14342 1164 14159 22017 28655 28655 1 NILHQGQEAILQR Unmodified 1518.8267 0.82667409 2379 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 0 6 0 1 45.04 45.04 3 2.1821E-12 12172 TMT1-5 153.49 120.45 122.99 143.87 126.54 133.55 111.32 113.02 116 145 131 131 116 109 1 1 1 1 1 1 25580 14343 2379 14160 22018 28656 28656 1 NILIDFTK Unmodified 962.54368 0.54368251 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 no no 0 0 0 0 0 8 0 1 67.492 67.492 2 0.0038701 20468 TMT1-7 129.1 62.841 513.75 535.19 664.69 597.87 508.63 745.54 485 546 671 592 537 713 2 2 2 2 2 2 91465 14344 787 14161 22019 28657;28658 28657 2 NILLTNEQLESAR Unmodified 1499.7944 0.79437091 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 5 0 1 54.806 54.806 3 2.1456E-12 15875 TMT1-4 153.52 121.51 85.007 101.9 53.597 58.735 77.873 90.52 80 102 58 58 80 87 1 1 1 1 1 1 21748 14345 2664 14162 22020 28659 28659 1 NILPFDHSR Unmodified 1097.5618 0.56179219 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6.5 0.5 1 1 45.067 45.067 3 0.00082354 11616 TMT1-6 99.855 51.061 184.81 284.35 257.17 186.89 231.55 256.69 175 283 262 189 238 247 4 4 4 4 4 4 48851 14346 936 14163 22021;22022 28660;28661;28662;28663 28662 4 NILSSADYVER Unmodified 1265.6252 0.62518031 1649 Q12846;Q12846-2 STX4 Syntaxin-4 yes no 0 0 0 0 0 4 0 1 52.058 52.058 2 0.00041004 15055 TMT1-3 103.69 54.268 77.22 70.346 126.76 38.622 101.83 89.836 73 73 123 44 102 87 1 1 1 1 1 1 17725 14347 1649 14164 22023 28664 28664 1 NILTEIYR Unmodified 1020.5604 0.56039521 1880 Q15907 RAB11B Ras-related protein Rab-11B yes yes 0 0 0 0 0 7 0 1 59.037 59.037 2 0.0035785 17103 TMT1-6 130.75 74.657 169.06 277.78 204.51 213.69 310.22 244.86 160 275 214 212 314 238 1 1 1 1 1 1 44174 14348 1880 14165 22024 28665 28665 1 NILVESEAHVK Unmodified 1237.6667 0.6666512 1265 P52333;P52333-2 JAK3 Tyrosine-protein kinase JAK3 yes no 0 0 0 0 0 5 0 1 45.358 45.358 3 0.042086 12210 TMT1-4 45.257 20.875 68.982 87.005 54.529 59.695 23.881 108.05 65 87 58 58 29 102 1 1 1 1 1 1 7792.1 14349 1265 14166 22025 28666 28666 1 NINADEAAAMGAVYQAAALSK Unmodified 2078.0103 0.010253695 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 7 0 2 75.96 75.96 3;4 2.3277E-18 23717 TMT1-6 124.86 102.85 77.358 102.03 76.761 73.787 75.862 128.95 73 102 80 73 80 123 2 2 2 2 2 2 19462 14350 3017 14167 22026;22027 28667;28668 28667 2 NINIGDISIK Unmodified 1085.6081 0.60807369 2302 Q92572 AP3S1 AP-3 complex subunit sigma-1 yes yes 0 0 0 0 0 7 0 1 63.191 63.191 2 0.0034845 18728 TMT1-6 96.009 27.384 84.627 115.95 105.6 111.19 87.994 152.06 80 116 109 109 94 145 1 1 1 1 1 1 12709 14351 2302 14168 22028 28669 28669 1 NINLIVQK Unmodified 940.57057 0.57056597 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 8.5 0.5 1 1 55.682 55.682 2;3 0.00162 13963 TMT1-8 140.98 82.003 299.73 384.89 334.95 259.77 352.74 285.22 283 386 343 262 358 277 2 2 2 2 2 2 39696 14352 1467;1637 14169 22029;22030 28670;28671 28671 2 NIPGDFECECPEGYR Unmodified 1841.7349 0.73488347 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 2 0 2 53.152 53.152 3 2.1034E-10 16210 TMT1-1 95.57 91.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14353 529 14170 22031;22032 28672;28673 28673 2 NIPGITLLNVSK Unmodified 1267.75 0.7499869 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 9 0 1 69.482 69.482 3 0.00063156 19455 TMT1-8 76.326 44.483 85.305 47.683 49.58 51.868 48.888 60.433 80 51 51 51 51 58 1 1 1 1 1 1 11145 14354 1041 14171 22033 28674 28674 1 NIPIPTLK Unmodified 894.55385 0.55385327 2788 Q9NYL9;P28289-2;P28289 TMOD3;TMOD1 Tropomodulin-3;Tropomodulin-1 yes no 0 0 0 0 0 9 0 1 61.161 61.161 3 0.0010585 16154 TMT1-8 103.56 67.683 160.6 210.72 240.61 101.86 156.1 191.69 152 212 239 109 160 184 1 1 1 1 1 1 18092 14355 2788 14172 22034 28675 28675 1 NIPLLFLQNITGFMVGR Unmodified 1932.0655 0.06552415 2689 Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 9 0 1 102.99 102.99 3 0.03622 32148 TMT1-8 34.909 20.652 7.3984 15.362 5.9058 15.919 6.5907 0 7 15 7 15 7 0 1 1 1 1 1 0 1879 14356 2689 14173 22035 28676 28676 1 NIPPYFVALVPQEEELDDQK Unmodified 2343.1634 0.1634431 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 5.33 0.471 2 1 79.599 79.599 3;4 2.6939E-13 25663 TMT1-4 104.89 100.94 130.61 159.85 94.426 127.69 117.6 151.21 123 160 102 124 123 145 3 3 3 3 3 3 37694 14357 675 14174 22036;22037;22038 28677;28678;28679;28680 28678 4 NIPQGAPVK Unmodified 922.52362 0.52361577 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 41.492 41.492 2 0.0017261 10217 TMT1-6 114.5 63.152 146.36 165.35 147.94 131.72 140.45 150.56 138 167 152 131 145 145 2 2 2 2 2 2 18462 14358 1702 14175 22039;22040 28681;28682 28682 2 NIQATLHQK Unmodified 1051.5774 0.57744226 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 0 7 0 1 36.609 36.609 3 0.00015807 8233 TMT1-6 128.38 103.46 77.335 109.52 74.204 121.1 67.42 98.28 73 109 80 116 73 94 1 1 1 1 1 1 4655.1 14359 1825 14176 22041 28683 28683 1 NIQDSVPK Unmodified 899.47125 0.47124585 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 0 1 41.417 41.417 2 5.1809E-17 10610 TMT1-4 158.61 98.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14360 68 14177 22042 28684 28684 1 NIQDTSDLDAIAK Unmodified 1402.694 0.69398816 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6;Q9NZB2-5;Q9NZB2-2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 4 0 1 56.08 56.08 2 0.0036382 16699 TMT1-3 77.644 38.89 38.082 58.437 42.298 36.18 34.417 45.922 36 58 44 36 36 44 1 1 1 1 1 1 6619.6 14361 2795 14178 22043 28685 28685 1 NIQFEAFHVFK Unmodified 1378.7034 0.70337105 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 8 0 1 63.277 63.277 3 5.7976E-06 18824 TMT1-7 116.74 82.861 98.987 161.65 178.11 169.16 146.31 142.93 94 161 181 167 152 138 1 1 1 1 1 1 29250 14362 2985 14179 22044 28686 28686 1 NIQSLEVIGK Unmodified 1099.6237 0.62372375 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 5.75 2.86 2 1 3 1 1 58.723 58.723 2;3 1.3507E-63 16831 TMT1-6 244.61 164.45 35097 48092 38566 29887 47152 44632 33149 48029 39704 30258 47856 43131 15 15 15 15 15 15 8722500 14363 448 14180 22045;22046;22047;22048;22049;22050;22051;22052 28687;28688;28689;28690;28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701 28695 15 NIQTSESHPLR Unmodified 1280.6473 0.64731274 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 5.33 1.25 1 1 1 29.328 29.328 3 3.7959E-17 6064 TMT1-3 179.94 139.78 84.778 131.48 67.024 81.839 85.407 83.909 80 130 73 80 88 81 3 3 3 3 3 3 16580 14364 1658 14181 22053;22054;22055 28702;28703;28704 28702 3 NIQVDEANLLTWQGLIVPDNPPYDK Unmodified 2851.4392 0.43922403 1489 P68036;P68036-3 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 0 6.57 0.495 3 4 86.435 86.435 3;4;5 2.3356E-38 27781 TMT1-6 120.63 107.04 193.04 336.75 271.81 223.92 308.76 273.68 183 333 280 225 314 265 7 7 7 7 7 7 93000 14365 1489 14182 22056;22057;22058;22059;22060;22061;22062 28705;28706;28707;28708;28709;28710;28711;28712;28713;28714 28713 10 NIQVSHQEFSK Unmodified 1315.6521 0.65206377 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6 0 1 40.064 40.064 3 3.4784E-06 10178 TMT1-5 110.58 72.901 330.43 328.54 272.31 256.78 303.51 382.56 311 334 282 255 314 367 1 1 1 1 1 1 42051 14366 2267 14183 22063 28715 28715 1 NISANEFLEFGSYQGNMFGTK Unmodified 2353.0685 0.068496856 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 7 0 1 78.77 78.77 3 0.00016895 24816 TMT1-6 61.524 50.686 23.218 44.795 27.251 29.69 20.35 37.795 22 44 29 29 22 36 1 1 1 1 1 1 4859.9 14367 1534 14184 22064 28716 28716 1 NISELFYYAQK Unmodified 1374.682 0.68196691 2145;2146 Q8IXI1;Q8IXI1-2;Q8IXI2-4;Q8IXI2;Q8IXI2-5;Q8IXI2-2;Q8IXI2-7;Q8IXI2-3;Q8IXI2-6 RHOT2;RHOT1 Mitochondrial Rho GTPase 2;Mitochondrial Rho GTPase 1 no no 0 0 0 0 0 8 0 1 71.569 71.569 3 0.00017927 22096 TMT1-7 100.93 67.522 84.443 162.93 96.646 78.948 145.26 81.135 80 160 102 80 145 80 1 1 1 1 1 1 11380 14368 2145;2146 14185 22065 28717 28717 1 NISFMVK Unmodified 837.44186 0.44185998 101 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 0 9 0 1 57.176 57.176 2 0.013673 14585 TMT1-8 107.66 40.983 177.35 211.44 129.46 140.85 120.72 286.51 167 212 138 138 131 272 1 1 1 1 1 1 12822 14369 101 14186 22066 28718 28718 1 NISFNDKK Unmodified 964.49779 0.49779495 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-4 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 1 7.5 0.5 1 1 41.731 41.731 2;3 0.0027343 10310 TMT1-6 101.46 51.426 1312.5 1694.3 1045.7 1103.6 1292.3 1616.5 1237 1692 1112 1089 1337 1551 2 2 2 2 2 2 81690 14370 894;720;1015 14187 22067;22068 28719;28720 28719 2 NISFTVWDVGGQDK Unmodified 1564.7522 0.75217174 1519 P84077;P61204 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 0 0 0 6.5 0.5 1 1 69.933 69.933 3 8.1202E-19 21451 TMT1-6 159.22 123.54 863.07 1153.9 941.92 812.72 991.82 1038.8 815 1154 972 812 1018 1001 4 4 4 4 4 4 296680 14371 1519 14188 22069;22070 28721;28722;28723;28724 28723 4 NISHYEEQLVK Unmodified 1358.683 0.68302954 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 4 0 1 46.355 46.355 3 0.016474 12862 TMT1-3 55.314 1.1703 161.18 195.07 155.89 105.71 219.91 155.76 152 196 160 109 220 152 1 1 1 1 1 1 20506 14372 695 14189 22071 28725 28725 1 NISNYFSFSK Unmodified 1205.5717 0.57168818 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 64.707 64.707 3 0.0018255 17558 TMT1-8 77.062 50.1 92.036 146.45 96.876 95.122 98.172 120.85 87 145 102 94 102 116 1 1 1 1 1 1 10511 14373 2061 14190 22072 28726 28726 1 NITLLHYLITIVENK Unmodified 1783.0244 0.024370842 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 9 0 1 90.181 90.181 3 6.4312E-08 27507 TMT1-8 106.19 80.321 30.721 28.069 42.771 67.309 63.093 52.566 29 29 44 65 65 51 1 1 1 1 1 1 3003.9 14374 3011 14191 22073 28727 28727 1 NITYEELR Unmodified 1036.5189 0.51892433 2772 Q9NX40 OCIAD1 OCIA domain-containing protein 1 yes yes 0 0 0 0 0 3 0 1 45.296 45.296 2 0.0026313 13373 TMT1-2 135.71 43.858 108.12 130.21 112.6 102.23 135.28 127.26 102 131 116 102 138 123 1 1 1 1 1 1 30640 14375 2772 14192 22074 28728 28728 1 NITYLPAGQSVLLQLPQ Unmodified 1854.0251 0.025099124 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 8 0 1 84.663 84.663 3 4.8558E-07 27150 TMT1-7 91.657 67.466 68.994 94.593 46.107 68.495 47.574 76.46 65 94 51 66 51 73 2 2 2 2 2 2 65260 14376 1012 14193 22075 28729;28730 28730 2 NIVAAMK Unmodified 745.41565 0.41564523 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 9 0 1 48.064 48.064 2 0.016123 11037 TMT1-8 97.071 51.353 68.619 124.85 83.418 64.634 76.539 121.47 65 123 87 65 80 116 1 1 1 1 1 1 5828 14377 946 14194 22076 28731 28731 1 NIVAVGAGFCDGLR Unmodified 1447.7242 0.72418285 2171 Q8N335 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein yes yes 0 0 0 0 0 7 0 1 61.103 61.103 2 6.2618E-05 17925 TMT1-6 97.911 57.994 23.213 36.147 35.391 28.633 50.763 36.927 22 36 36 29 51 36 1 1 1 1 1 1 5073.8 14378 2171 14195 22077 28732 28732 1 NIVEYIK Unmodified 877.49092 0.49091866 2817 Q9P126-2;Q9P126 CLEC1B C-type lectin domain family 1 member B yes no 0 0 0 0 0 7 0 1 56.668 56.668 2 0.0092918 16124 TMT1-6 112.94 34.445 521.29 644.85 566.46 371.28 431.61 672.06 492 648 577 378 451 642 2 2 2 2 2 2 52262 14379 2817 14196 22078 28733;28734 28733 2 NIVFGINPGVAPPAGAYNLLLCLASR Unmodified 2696.4472 0.44722671 1628 Q08AF3 SLFN5 Schlafen family member 5 yes yes 0 0 0 0 0 9 0 1 94.676 94.676 4 3.2418E-05 29123 TMT1-8 50.029 35.557 15.723 0 62.468 28.974 4.9342 30.773 15 0 59 30 7 29 1 0 1 1 1 1 2072 14380 1628 14197 22079 28735 28735 1 NIVLSGGSTMFR Oxidation (M) 1296.6496 0.64962092 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 1 0 0 9 0 1 50.199 50.199 2 0.01747 11897 TMT1-8 63.415 24.267 23.259 44.908 20.34 14.649 28.371 37.566 22 44 22 15 29 36 1 1 1 1 1 1 5412.5 14381 1379 14198 22080 28736 28736 225 1 NIVLSGGSTMFR Unmodified 1280.6547 0.6547063 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 9 0 2 57.925 57.925 2;3 2.4637E-39 14876 TMT1-8 219.93 169.97 299.85 348.55 344.49 288.86 402.86 401.05 283 352 351 290 411 387 2 2 2 2 2 2 110240 14382 1379 14198 22081;22082 28737;28738 28737 2 NIVWIAECIAQR Unmodified 1471.7606 0.76056836 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 9 0 1 75.301 75.301 3 0.0043031 21754 TMT1-8 59.185 25.96 23.087 51.987 43.098 28.607 27.729 37.585 22 51 44 29 29 36 1 1 1 1 1 1 3969.5 14383 1391 14199 22083 28739 28739 1 NIYSEELR Unmodified 1022.5033 0.50327426 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 3 0 1 42.921 42.921 2 0.0030392 12461 TMT1-2 133.57 63.306 200.66 230.57 164.49 176.33 215.39 253.96 189 232 173 174 222 244 1 1 1 1 1 1 38077 14384 429 14200 22084 28740 28740 1 NIYVLQELDNPGAK Unmodified 1572.8148 0.814772 675 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 0 0 5.5 0.5 1 1 66.433 66.433 3 2.1005E-07 20542 TMT1-5 107.69 87.261 245.4 380.04 271.52 239.04 319.16 316.02 232 377 283 239 326 305 3 3 3 3 3 3 80209 14385 675 14201 22085;22086 28741;28742;28743 28742 3 NKDEEIQQLR Unmodified 1271.647 0.64697839 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 1 4 0 1 37.532 37.532 3 0.011911 9362 TMT1-3 68.548 38.48 247.16 442.49 284.1 285.11 445.03 457.41 234 436 300 284 453 441 1 1 1 1 1 1 30282 14386 2306 14202 22087 28744 28744 1 NKDGVLVDEFGLPQIPAS Unmodified 1897.9785 0.97854286 2806 Q9NZZ3 CHMP5 Charged multivesicular body protein 5 yes yes 0 0 0 0 1 5 0 1 75.053 75.053 3 0.0034316 23811 TMT1-4 53.779 23.341 38.41 43.162 0 31.04 34.946 37.379 36 43 0 29 36 36 1 1 0 1 1 1 10481 14387 2806 14203 22088 28745 28745 1 NKDIVTVANAVFVK Unmodified 1516.8613 0.86132826 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 1 9 0 1 62.998 62.998 3 9.1766E-05 16929 TMT1-8 79.337 58.91 61.247 103.08 78.587 33.208 77.435 137.44 58 102 80 36 80 131 1 1 1 1 1 1 10795 14388 525 14204 22089 28746 28746 1 NKDQGTYEDYVEGLR Unmodified 1785.817 0.81695684 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 1 3.67 1.25 1 4 1 50.03 50.03 3;4 6.5156E-20 14150 TMT1-3 166.62 140.79 7493.3 9451 9395.7 6712 8177.9 9896.8 7080 9505 9519 6794 8438 9503 8 8 8 8 8 8 1388500 14389 1356 14205 22090;22091;22092;22093;22094;22095 28747;28748;28749;28750;28751;28752;28753;28754;28755 28749 9 NKEEAAEYAK Unmodified 1151.5459 0.54586736 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 1 4.5 0.5 1 1 36.031 36.031 3 0.00459 8736 TMT1-3 79.633 47.135 672.63 437.82 374.62 737.36 868.74 550.85 631 460 404 710 881 540 2 2 2 2 2 2 36729 14390 1442 14206 22096;22097 28756;28757 28756 2 NKEGLHNAK Unmodified 1009.5305 0.53049207 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 6.5 0.5 1 1 26.773 26.773 4 0.0061769 4907 TMT1-5 75.294 34.705 281.26 265.53 293.58 258.22 275.48 283.16 265 272 298 257 284 273 3 3 3 3 3 3 7930.8 14391 787 14207 22098;22099 28758;28759;28760 28758 3 NKEIFLR Unmodified 918.5287 0.52870115 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 8 0 1 42.294 42.294 3 0.017801 10525 TMT1-7 81.191 33.076 1543 2184.9 1573.5 1466.5 1536.1 2194.8 1457 2176 1643 1454 1605 2100 1 1 1 1 1 1 108430 14392 708 14208 22100 28761 28761 1 NKETGALAAAK Unmodified 1072.5877 0.58767259 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 7 0 1 37.171 37.171 3 4.4222E-05 8471 TMT1-6 111.94 54.134 129.93 204.37 171.37 89.452 163.56 204.27 123 203 174 94 167 196 1 1 1 1 1 1 13125 14393 325 14209 22101 28762 28762 1 NKEVTWEVLEGEVEK Unmodified 1787.8941 0.89414453 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 1 5 0 1 62.682 62.682 3 9.6511E-05 19005 TMT1-4 86.367 80.552 77.719 63.1 49.033 44.254 48.688 76.429 73 65 51 44 51 73 1 1 1 1 1 1 10815 14394 498 14210 22102 28763 28763 1 NKGNECFQK Unmodified 1123.508 0.50804206 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 7 0 1 34.138 34.138 3 0.033355 7244 TMT1-6 58.63 24.251 177.43 380.4 333.44 167.93 301.07 359.18 169 374 337 177 307 345 1 1 1 1 1 1 14597 14395 986 14211 22103 28764 28764 1 NKHEAMITDLEER Unmodified 1584.7566 0.75660519 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4 0.816 1 1 1 39.025 39.025 4 3.2648E-08 9764 TMT1-3 119.17 101.25 2668.9 3858.4 3342.5 2511.5 3191.4 4131.4 2524 3848 3419 2535 3297 3961 7 7 7 7 7 7 359200 14396 1019 14212 22104;22105;22106 28765;28766;28767;28768;28769;28770;28771 28767 7 NKHEAMITDLEER Oxidation (M) 1600.7515 0.75151981 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 1 4 0 4 35.851 35.851 4 0.00015086 8155 TMT1-3 93.649 74.661 809.2 1100.7 843.48 768.4 929.05 1189.8 764 1099 876 765 961 1141 7 7 7 7 7 7 91029 14397 1019 14212 22107;22108;22109;22110 28772;28773;28774;28775;28776;28777;28778 28774 180 7 NKLEASIENLR Unmodified 1285.699 0.69901396 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 6 0 1 49.353 49.353 3 0.00038007 13883 TMT1-5 100.02 62.878 122.18 224.74 193.39 151.45 168.04 204.14 116 222 198 152 174 196 1 1 1 1 1 1 18265 14398 1723 14213 22111 28779 28779 1 NKNDLTR Unmodified 859.45118 0.45117911 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 1 6 0 1 27.588 27.588 3 0.006011 5349 TMT1-5 78.324 13.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14399 1099 14214 22112 28780 28780 1 NKPEWFFK Unmodified 1094.5549 0.5549159 1506 P78417;P78417-3;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 1 5 4 1 1 56.338 56.338 3 0.00275 14058 TMT1-8 84.213 45.645 2160.4 2824.7 2944 2146.6 2935 2825.4 2043 2838 2976 2175 2993 2729 3 3 3 3 3 3 172960 14400 1506 14215 22113;22114 28781;28782;28783 28783 3 NKPHTPFR Unmodified 995.5301 0.53009814 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 1 9 0 1 29.175 29.175 4 0.024352 4730 TMT1-8 61.962 41.756 61.284 87 85.885 61.057 84.546 106.32 58 87 87 62 87 102 1 1 1 1 1 1 4903.1 14401 39 14216 22115 28784 28784 1 NKPLEQSVEDLSK Unmodified 1485.7675 0.76748745 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 1 5 0 1 49.759 49.759 3 0.0021259 13938 TMT1-4 74.769 34.192 46.589 65.192 49.462 35.333 56.721 67.671 44 65 51 36 58 65 1 1 1 1 1 1 5280.5 14402 356 14217 22116 28785 28785 1 NKPSDLGTK Unmodified 958.50836 0.50835964 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 7 0 1 35.152 35.152 3 0.029087 7630 TMT1-6 60.691 28.93 293.63 484.69 372.86 368.14 398.38 486.45 278 480 388 364 413 467 1 1 1 1 1 1 34108 14403 986 14218 22117 28786 28786 1 NKPVPDQIINFYK Unmodified 1574.8457 0.8456782 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 1 8 0 1 59.771 59.771 3 0.0015803 17457 TMT1-7 76.588 57.265 91.867 153.54 119.3 92.36 173.94 111.23 87 152 123 94 174 109 1 1 1 1 1 1 12969 14404 2305 14219 22118 28787 28787 1 NKTEVDIYNSDPLICR Unmodified 1935.936 0.93602612 2482 Q99685 MGLL Monoglyceride lipase yes yes 0 0 0 0 1 5 0 1 54.089 54.089 3 1.2615E-15 15607 TMT1-4 132.64 120.52 153.81 148.47 172.45 137.61 156.4 135.18 145 152 174 138 160 131 1 1 1 1 1 1 28673 14405 2482 14220 22119 28788 28788 1 NKVPWNR Unmodified 912.49298 0.49298435 930 P28482 MAPK1 Mitogen-activated protein kinase 1 yes yes 0 0 0 0 1 9 0 1 36.203 36.203 3 0.0092471 6796 TMT1-8 82.386 50.321 102.8 138.27 97.479 115.66 108.42 130.16 97 138 103 113 113 125 1 1 1 1 1 1 8534.5 14406 930 14221 22120 28789 28789 1 NLAASWYHK Unmodified 1088.5403 0.54032847 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 1 47.144 47.144 3 0.003148 10648 TMT1-8 72.643 43.916 68.747 117.65 67.949 81.522 99.31 105.9 65 116 73 80 102 102 1 1 1 1 1 1 5111.3 14407 2064 14222 22121 28790 28790 1 NLADCLR Unmodified 860.41744 0.41743614 1192 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 0 5 0 1 42.848 42.848 2 0.019488 11172 TMT1-4 98.009 32.333 314.8 436.91 281.56 293.41 418.32 401.67 297 435 298 291 426 388 1 1 1 1 1 1 27635 14408 1192 14223 22122 28791 28791 1 NLAENISR Unmodified 915.47739 0.47739386 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 0 4.5 0.5 1 1 36.85 36.85 2 0.0059781 8789 TMT1-4 111.46 32.939 356.62 605.93 503.84 439.27 385.43 494.29 338 600 519 436 404 474 2 2 2 2 2 2 67264 14409 648;515 14224 22123;22124 28792;28793 28793 2 NLAFHTLSQEVLLK Unmodified 1611.8984 0.89844205 1974 Q5T2E6;Q5T2E6-2 C10orf76 UPF0668 protein C10orf76 yes no 0 0 0 0 0 8 0 1 63.155 63.155 3 6.2687E-05 18800 TMT1-7 88.73 55.526 60.985 102.36 123.15 78.234 99.205 113.36 58 102 123 80 102 109 1 1 1 1 1 1 5783.1 14410 1974 14225 22125 28794 28794 1 NLAFYWILK Unmodified 1166.6488 0.64881629 2677 Q9HB40 SCPEP1 Retinoid-inducible serine carboxypeptidase yes yes 0 0 0 0 0 9 0 1 81.667 81.667 2 0.00079046 24191 TMT1-8 130.27 83.38 38.056 74.554 33.005 28.786 50.206 52.933 36 73 36 29 51 51 1 1 1 1 1 1 7851.9 14411 2677 14226 22126 28795 28795 1 NLAIPVINK Unmodified 980.60187 0.6018661 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 9 0 1 60.93 60.93 2 0.00043609 16069 TMT1-8 133.6 70.883 77.313 101.9 84.358 73.458 69.317 106.75 73 102 87 73 73 102 1 1 1 1 1 1 9473.6 14412 1264 14227 22127 28796 28796 1 NLALGGGLLLLLAESR Unmodified 1608.9563 0.95629128 138 O15260;O15260-2 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 9 0 1 90.721 90.721 3 5.8949E-12 27681 TMT1-8 118.71 91.82 7.3027 15.096 22.208 14.661 21.811 15.368 7 15 22 15 22 15 1 1 1 1 1 1 6556 14413 138 14228 22128 28797 28797 1 NLALVWAPNLLR Unmodified 1378.8085 0.80850483 1919 Q2M1Z3 ARHGAP31 Rho GTPase-activating protein 31 yes yes 0 0 0 0 0 9 0 1 76.264 76.264 2 2.4828E-07 22133 TMT1-8 113.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14414 1919 14229 22129 28798 28798 1 NLANTVTEEILEK Unmodified 1472.7722 0.77223848 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 4.5 0.5 1 1 71.162 71.162 2;3 1.4254E-27 22205 TMT1-4 165.7 109.13 130.83 243.75 166.55 168.73 206.24 195.59 124 240 175 167 211 189 2 2 2 2 2 2 27739 14415 226;227 14230 22130;22131 28799;28800;28801 28801 3 NLATAYDNFVELVANLK Unmodified 1893.9836 0.98362824 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 9 0 2 97.772 97.772 3;4 4.6199E-14 30148 TMT1-8 112.57 89.455 255.1 335.24 302.6 222.3 297.39 332.63 241 336 306 225 305 320 5 5 4 5 5 5 40172 14416 2267 14231 22132;22133 28802;28803;28804;28805;28806 28804 5 NLATTVTEEILEK Unmodified 1459.777 0.77698951 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 5 0 1 75.29 75.29 3 7.3162E-11 23954 TMT1-4 131.53 72.791 138.91 181.13 125 116.26 163.64 165.89 131 181 131 116 167 160 2 2 2 2 2 2 28070 14417 170 14232 22134 28807;28808 28808 2 NLAVQAQK Unmodified 870.49232 0.49231565 353 O95379-3;O95379-2;O95379;O95379-4 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes no 0 0 0 0 0 7 0 1 39.551 39.551 3 0.003793 9365 TMT1-6 89.296 36.613 107.88 152.21 134.11 124.09 125.33 174.45 102 152 138 123 131 167 1 1 1 1 1 1 12755 14418 353 14233 22135 28809 28809 1 NLAWVDSDQLLYQHFWCLPVIK Unmodified 2744.3785 0.37847845 2581 Q9BZE1 MRPL37 39S ribosomal protein L37, mitochondrial yes yes 0 0 0 0 0 9 0 1 86.984 86.984 4 0.00027216 26246 TMT1-8 49.528 25.966 30.793 20.714 36.945 13.664 28.123 46.101 29 22 36 15 29 44 1 1 1 1 1 1 3892.1 14419 2581 14234 22136 28810 28810 1 NLDDGIDDER Unmodified 1160.4946 0.49456007 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 0 2 0 1 41.236 41.236 2 0.0029809 11453 TMT1-1 67.385 40.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14420 662;2634 14235 22137 28811 28811 1 NLDDGIDDERLR Unmodified 1429.6797 0.67973508 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 1 2 0 1 43.408 43.408 3 0.0006406 12274 TMT1-1 88.163 62.968 100.12 61.184 73.305 33.788 63.315 90.935 94 65 73 36 65 87 1 1 1 1 1 1 13015 14421 662;2634 14236 22138 28812 28812 1 NLDENYCR Unmodified 1082.4451 0.44510746 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 2 0 1 34.921 34.921 2 0.0064451 8969 TMT1-1 105.1 40.681 46.739 42.943 43.18 36.28 26.314 68.539 44 44 44 36 29 65 1 1 1 1 1 1 6981.3 14422 401 14237 22139 28813 28813 1 NLDFQDVLDK Unmodified 1205.5928 0.59281755 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 5 0 1 68.422 68.422 3 4.3793E-05 21222 TMT1-4 91.937 43.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14423 3001 14238 22140 28814 28814 1 NLDHPHIVK Unmodified 1071.5825 0.58252764 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 6 0 2 34.233 34.233 3;4 0.0050929 7869 TMT1-5 72.643 45.528 229.56 385.25 405.7 282.07 337.73 387.98 218 383 409 286 348 373 2 2 2 2 2 2 14874 14424 1770 14239 22141;22142 28815;28816 28815 2 NLDIERPTYTNLNR Unmodified 1717.8747 0.87474649 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 1 6 1.41 1 1 1 1 1 46.272 46.272 3 1.5826E-22 12763 TMT1-3 176.87 144.17 3115 4184.6 3290.4 2851.1 2908.2 3914.5 2941 4182 3405 2838 3034 3750 7 7 7 7 7 7 1132300 14425 622;1491;2068;2510;1492;2783 14240 22143;22144;22145;22146;22147 28817;28818;28819;28820;28821;28822;28823 28817 7 NLDKEYLPIGGLAEFCK Unmodified 1965.987 0.98699906 396 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 0 1 7 0 2 69.58 69.58 3;4 1.1234E-09 21217 TMT1-6 106.28 88.786 278.5 257.31 223.69 235.52 251.29 347.81 262 263 232 232 262 333 2 2 2 2 2 2 50454 14426 396 14241 22148;22149 28824;28825 28825 2 NLDLDSIIAEVK Unmodified 1328.7187 0.71874635 23 CON__Q8VED5;CON__Q5XKE5;CON__O95678;CON__P48668;CON__P04259;CON__P02538;CON__P13647;Q5XKE5;O95678;P48668;P04259;P02538;P13647;CON__P35908v2;CON__P35908;P35908 KRT79;KRT75;KRT6C;KRT6B;KRT6A;KRT5;KRT2 Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 0 0 6 0 1 80.4 80.4 3 0.00023598 26095 TMT1-5 90.926 60.867 38.308 20.213 36.601 21.219 34.335 68.31 36 22 36 22 36 65 1 1 1 1 1 1 3761.2 + 14427 23 14242 22150 28826 28826 1 NLDPEQMSQVLDAMFEK Unmodified 1993.9125 0.91251349 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 6 0 2 90.232 90.232 3 0.0064763 29764 TMT1-5 37.969 27.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14428 974 14243 22151;22152 28827;28828 28828 2 NLDQEQLSQVLDAMFER Unmodified 2034.9681 0.96805453 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 6 0 1 86.91 86.91 3 2.7721E-07 28627 TMT1-5 92.096 87.647 15.772 21.745 35.878 37.933 19.678 46.342 15 22 36 37 22 44 1 1 1 1 1 1 7182.1 14429 695 14244 22153 28829 28829 1 NLDSLEEDLDFLR Unmodified 1577.7573 0.7573167 1398 P61758-2;P61758 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 0 3.5 0.5 1 1 81.548 81.548 3 0.00037123 26563 TMT1-3 81.904 71.049 23.288 37.434 21.751 30.974 27.62 37.588 22 37 22 30 29 36 2 2 1 2 2 2 6657.9 14430 1398 14245 22154;22155 28830;28831 28831 2 NLDSTTVAVHGEEIYCK Unmodified 1934.9044 0.90439164 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 4.33 0.471 2 1 50.331 50.331 3;4 2.2743E-19 14149 TMT1-4 139.49 129.12 513.1 794.75 734.06 537.13 728.89 717.94 486 791 747 544 744 693 4 4 4 4 4 4 150350 14431 830 14246 22156;22157;22158 28832;28833;28834;28835 28835 4 NLDTGEEIPLSLAEEK Unmodified 1756.8731 0.87307474 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 3 0.816 1 1 1 67.432 67.432 3 7.8719E-09 22063 TMT1-2 111.34 82.532 230.34 250.17 208.79 245.08 254.81 232.58 217 253 218 240 262 225 4 4 4 4 4 4 43860 14432 1960 14247 22159;22160;22161 28836;28837;28838;28839 28837 4 NLDYVATSIHEAVTK Unmodified 1659.8468 0.84680041 756 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 0 7 1 1 1 60.893 60.893 3 0.00052547 17950 TMT1-7 74.12 47.091 215.09 286.18 216.76 189.47 222.87 323.03 203 286 225 189 232 309 2 2 2 2 2 2 19851 14433 756 14248 22162;22163 28840;28841 28841 2 NLEAIVQEIKPTALIGVAAIGGAFSEQILK Unmodified 3092.7485 0.74853692 1151 P48163-2;P48163 ME1 NADP-dependent malic enzyme yes no 0 0 0 0 1 9 0 1 101.7 101.7 4 1.1588E-15 31640 TMT1-8 81.697 67.29 23.319 21.333 30.083 21.981 14.456 23.039 22 22 30 22 15 22 2 2 2 2 1 2 2391.1 14434 1151 14249 22164 28842;28843 28842 2 NLEALALDLMEPEQAVDLTLPK Unmodified 2422.2665 0.26652796 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 5.5 0.5 1 1 96.94 96.94 4 3.52E-06 32263 TMT1-4 69.133 56.469 62.45 95.82 62.751 58.302 71.862 52.932 59 95 66 58 73 51 3 3 3 3 3 2 13606 14435 675 14250 22165;22166 28844;28845;28846 28845 3 NLEAPYIPDVSSPSDTSNFDVDDDVLR Unmodified 2979.3622 0.3621555 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 3 0 1 77.064 77.064 3 0.0001142 25807 TMT1-2 43.291 38.083 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14436 3034 14251 22167 28847 28847 1 NLEAQHK Unmodified 838.42972 0.42971539 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 5 0 1 27.517 27.517 3 0.0047791 5180 TMT1-4 93.992 37.333 207.75 267.75 202.75 189.47 267.07 162.94 196 268 211 189 269 160 2 2 2 2 2 2 38773 14437 1883 14252 22168 28848;28849 28849 2 NLEAQHKELEEK Unmodified 1466.7365 0.73652168 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 5 0 1 35.895 35.895 4 0.0001883 8396 TMT1-4 94.551 51.763 208.25 243.23 140.12 195.41 149.71 252.63 196 244 152 189 160 241 1 1 1 1 1 1 10911 14438 1883 14253 22169 28850 28850 1 NLEAVETLGSTSTICSDK Unmodified 1923.9095 0.9095366 481 P05023-3;P05023-4;P05023;P05023-2;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 5 0 1 60.668 60.668 3 9.0793E-09 18171 TMT1-4 103.41 80.938 38.003 58.218 55.717 75.298 62.212 67.515 36 58 58 73 65 65 1 1 1 1 1 1 14198 14439 481 14254 22170 28851 28851 1 NLEGYVGFANLPNQVYR Unmodified 1952.9745 0.97446054 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 7 0 1 68.903 68.903 3 5.9358E-43 20932 TMT1-6 199.84 179.06 100.72 114.85 106.68 86.737 106.14 113.17 95 116 109 87 109 109 2 2 2 2 2 2 73365 14440 1883 14255 22171 28852;28853 28852 2 NLELNDDTILNDIK Unmodified 1628.8257 0.82573061 2030 Q6P3X3 TTC27 Tetratricopeptide repeat protein 27 yes yes 0 0 0 0 0 4 0 1 71.517 71.517 3 5.148E-08 22750 TMT1-3 114.7 76.751 54.166 73.497 31.264 67.459 91.581 106.12 51 73 36 65 94 102 1 1 1 1 1 1 7652.8 14441 2030 14256 22172 28854 28854 1 NLENDVNSLKDQLEDLK Unmodified 1985.9906 0.99056411 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 5 0 1 74.147 74.147 3 0.024237 23527 TMT1-4 47.082 23.949 61.688 49.269 49.946 44.209 48.177 91.367 58 51 51 44 51 87 1 1 1 1 1 1 14130 14442 251 14257 22173 28855 28855 1 NLEPEWAAAASEVK Unmodified 1513.7413 0.7412727 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 4.33 0.471 2 1 63.454 63.454 3 1.7354E-10 19278 TMT1-4 123.42 99.74 722.39 891.93 823.81 626.63 683.86 813.03 682 897 840 630 708 781 2 2 2 2 2 2 121400 14443 1827 14258 22174;22175;22176 28856;28857;28858;28859 28859 4 NLEQLGGTVTNPGGSGTSSR Unmodified 1930.9344 0.93444622 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 48.85 48.85 3 1.026E-23 13549 TMT1-4 135.98 110.8 184.71 276.51 281.12 169.91 186.96 298.48 175 276 283 174 196 285 2 2 2 2 2 2 81923 14444 1878 14259 22177;22178 28860;28861 28860 2 NLESTVSQIEK Unmodified 1246.6405 0.64049603 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 5 0 1 53.489 53.489 3 0.002791 15380 TMT1-4 54.199 23.761 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14445 1708 14260 22179 28862 28862 1 NLETPLCK Unmodified 973.49027 0.49026674 1303 P54819-2;P54819;P54819-3;P54819-5;P54819-6;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 0 6 0 1 48.721 48.721 2 0.0063949 13585 TMT1-5 105.78 53.789 230.08 357.56 341.25 284.47 240.08 365.18 218 356 348 283 254 349 2 2 2 2 2 2 47588 14446 1303 14261 22180 28863;28864 28863 2 NLEVLNFFNNQIEELPTQISSLQK Unmodified 2817.4549 0.45487409 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 0 8.2 0.748 1 2 2 92.258 92.258 3;4 2.0974E-23 30005 TMT1-7 121.25 107.65 384.68 580.71 498.83 485.28 395.59 563.29 364 578 515 478 418 539 6 6 6 6 6 6 205900 14447 1851 14262 22181;22182;22183;22184;22185 28865;28866;28867;28868;28869;28870;28871 28868 7 NLFASFPTEESSINYTFK Unmodified 2093.9946 0.99458686 1204 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 0 8 0 1 77.07 77.07 3 0.031833 24241 TMT1-7 37.999 20.51 20.092 24.766 28.67 25.166 23.956 30.23 19 25 29 25 25 29 1 1 1 1 1 1 3871.3 14448 1204 14263 22186 28872 28872 1 NLFDNLIEFLQK Unmodified 1492.7926 0.79257999 2836 Q9UBD5;Q9UBD5-2 ORC3 Origin recognition complex subunit 3 yes no 0 0 0 0 0 9 0 1 97.38 97.38 3 0.0025558 30040 TMT1-8 64.65 32.044 23.343 36.508 13.251 15.062 28.865 22.628 22 36 15 15 29 22 1 1 1 1 1 1 1819.9 14449 2836 14264 22187 28873 28873 1 NLGDQWHK Unmodified 996.47773 0.47772821 1173 P49247 RPIA Ribose-5-phosphate isomerase yes yes 0 0 0 0 0 6 0 1 40.817 40.817 3 0.015325 10500 TMT1-5 66.504 4.9223 183.61 293.77 271.41 170.45 247.41 304.21 174 292 275 175 254 292 1 1 1 1 1 1 15208 14450 1173 14265 22188 28874 28874 1 NLGIPIITVLGDSK Unmodified 1438.8395 0.83953018 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 8.5 0.5 1 1 79.699 79.699 3 1.5398E-05 25283 TMT1-7 96.135 79.912 108.45 99.829 82.952 104.29 119.7 121.31 102 102 87 102 123 117 2 2 2 2 2 2 17859 14451 1744 14266 22189;22190 28875;28876 28875 2 NLGIPLGQDAEEK Unmodified 1382.7042 0.70415892 2019 Q6NUK1 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 0 0 0 0 0 5 0 1 57.284 57.284 2 5.6419E-16 16847 TMT1-4 136.01 94.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14452 2019 14267 22191 28877 28877 1 NLGLEELGIELDPR Unmodified 1566.8253 0.82533668 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 4.33 0.471 2 1 74.966 74.966 2;3 2.8201E-07 24055 TMT1-3 114.56 72.687 116.91 137.76 70.969 96.565 103.54 145.22 110 138 73 94 108 139 3 3 2 3 3 3 49272 14453 600 14268 22192;22193;22194 28878;28879;28880 28878 3 NLGLYVK Unmodified 805.46979 0.46978929 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 8.5 0.5 1 1 53.698 53.698 2 0.0061026 13112 TMT1-8 100.07 56.943 520.18 792.86 628.17 438.36 620.76 709.3 492 788 645 446 636 682 2 2 2 2 2 2 87094 14454 1792 14269 22195;22196 28881;28882;28883 28883 3 NLGMTDAFELGK Unmodified 1294.6227 0.62273747 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 6 0 1 65.089 65.089 3 2.5274E-05 20066 TMT1-5 103.88 101.17 68.743 117.64 68.657 65.652 69.163 121.68 65 116 73 65 73 116 1 1 1 1 1 1 22268 14455 1014 14270 22197 28884 28884 1 NLGNSCYLNSVVQVLFSIPDFQR Unmodified 2669.3272 0.32717116 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 9 0 1 100.29 100.29 3 4.9817E-11 31167 TMT1-8 82.885 64.186 0 0 15.931 6.7015 0 0 0 0 15 7 0 0 0 0 1 1 0 0 2869.9 14456 1122 14271 22198 28885 28885 1 NLGPGMTK Unmodified 816.41637 0.41637351 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 7 0.816 1 1 1 42.072 42.072 2 0.011336 10906 TMT1-5 98.033 75.885 844.93 858.26 815.72 694.05 844.26 1047.2 796 873 834 694 872 1005 4 4 4 4 4 4 127640 14457 776 14272 22199;22200;22201 28886;28887;28888;28889 28886 4 NLGQNLWGPHR Unmodified 1290.6582 0.6581522 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 9 0 1 45.2 45.2 3 0.025594 9904 TMT1-8 45.829 20.612 223.96 259.6 370.35 298.12 351.67 417.43 212 264 370 299 363 401 1 1 1 1 1 1 7155.9 14458 2822 14273 22202 28890 28890 1 NLGQPIK Unmodified 768.44939 0.4493882 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 7 0 1 42.078 42.078 2 0.0096837 10446 TMT1-6 111.28 86.943 53.982 72.984 62.721 66.4 48.22 60.452 51 73 65 65 51 58 1 1 1 1 1 1 18378 14459 1009 14274 22203 28891 28891 1 NLGSIAK Unmodified 701.40719 0.40718903 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 43.47 43.47 2 0.010918 11033 TMT1-7 106.04 37.127 169.38 239.82 182.86 143.5 217.06 218.73 160 239 189 145 221 211 1 1 1 1 1 1 29058 14460 1139 14275 22204 28892 28892 1 NLGSINTELQDVQR Unmodified 1585.806 0.80599822 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 4.33 0.471 2 1 55.354 55.354 2;3 1.0324E-33 16361 TMT1-3 193.34 177.96 124.16 144.06 110.58 127.15 95.38 159.31 117 145 116 124 102 152 2 2 2 2 2 2 52119 14461 272 14276 22205;22206;22207 28893;28894;28895 28894 3 NLGTALAELR Unmodified 1056.5928 0.59275797 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.17 2.54 1 2 1 1 1 58.653 58.653 2;3 4.6809E-06 17411 TMT1-5 151.07 72.418 1304 1658.9 1607.8 1239.4 1414.7 1707.9 1232 1667 1635 1246 1463 1640 6 6 6 6 6 6 1697400 14462 3010 14277 22208;22209;22210;22211;22212;22213 28896;28897;28898;28899;28900;28901;28902 28898 7 NLGTIAK Unmodified 715.42284 0.4228391 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 7.5 0.5 1 1 43.665 43.665 2 0.007609 11084 TMT1-7 125.81 4.5218 1218.4 1481.5 1362 1053.8 1196.1 1713 1150 1491 1390 1059 1246 1639 3 3 3 3 3 3 210960 14463 708 14278 22214;22215 28903;28904;28905 28905 3 NLGVVVAPHTLK Unmodified 1246.7398 0.73975656 2576 Q9BYD2 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 0 0 0 0 0 9 0 1 49.275 49.275 3 0.0003769 11499 TMT1-8 83.314 61.116 77.643 71.522 54.729 75.081 76.865 98.011 73 73 58 73 80 94 1 1 1 1 1 1 4855 14464 2576 14279 22216 28906 28906 1 NLIAATK Unmodified 729.43849 0.43848916 4 A1A4S6 ARHGAP10 Rho GTPase-activating protein 10 yes yes 0 0 0 0 0 8 0 1 44.232 44.232 2 0.038323 11316 TMT1-7 86.953 53.403 130.24 158.83 157.08 131.47 125 174.46 123 160 160 131 131 167 1 1 1 1 1 1 8395.3 14465 4 14280 22217 28907 28907 1 NLIAFSEDGSDPYVR Unmodified 1681.7948 0.79476484 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 4 0 1 62.89 62.89 3 8.7053E-06 19334 TMT1-3 95.428 86.829 38.011 74.43 40.603 52.7 33.144 60.882 36 73 44 51 36 58 1 1 1 1 1 1 7538.4 14466 3 14281 22218 28908 28908 1 NLICAFLTDR Unmodified 1221.6176 0.61759251 251;1708 O75116;Q13464 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 no no 0 0 0 0 0 9 0 1 72.024 72.024 2 9.97E-05 20474 TMT1-8 117.7 54.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14467 251;1708 14282 22219 28909 28909 1 NLIDYFVPFLPLEYK Unmodified 1869.9917 0.99167373 100 O14656 TOR1A Torsin-1A yes yes 0 0 0 0 0 9 0 2 100.09 100.09 2;3 3.0005E-06 31053 TMT1-8 94.461 67.732 46.643 72.898 41.356 12.596 52.495 38.392 44 72 43 14 52 37 2 2 3 2 3 2 6909 14468 100 14283 22220;22221 28910;28911;28912 28910 3 NLIEMSELEIK Unmodified 1317.685 0.68500338 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 5 0 1 70.584 70.584 3 0.0025232 22081 TMT1-4 76.522 42.74 38.045 65.889 42.192 28.538 34.255 60.851 36 65 44 29 36 58 1 1 1 1 1 1 4058.1 14469 3038 14284 22222 28913 28913 1 NLILAGVK Unmodified 826.52764 0.52763852 2837 Q9UBE0;Q9UBE0-2;Q9UBE0-3 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 0 9 0 2 57.023 57.023 2;3 0.0010924 14541 TMT1-8 96.253 14.295 176.66 254.84 209.5 204.56 257.2 186.67 167 254 217 203 261 182 2 2 2 2 2 2 16977 14470 2837 14285 22223;22224 28914;28915 28915 2 NLILVVR Unmodified 825.54362 0.54362294 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 55.113 55.113 2 0.0098167 13819 TMT1-8 122.54 38.478 139.98 499.98 396.17 303.03 415.64 406.01 135 485 407 306 424 392 1 1 1 1 1 1 54318 14471 1540 14286 22225 28916 28916 1 NLIPFDQMTIEDLNEAFPETK Unmodified 2464.1832 0.18319226 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 5 0 2 87.156 87.156 3;4 6.906E-08 28530 TMT1-4 89.483 79.084 39.428 22.105 27.145 85.084 39.241 53.246 37 22 30 80 43 51 2 1 2 2 2 2 9506.2 14472 316 14287 22226;22227 28917;28918 28917 2 NLIQNMNNIISFPLDSLLK Unmodified 2186.1769 0.17692509 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 9 0 1 97.498 97.498 3 0.023733 30076 TMT1-8 38.453 18.875 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14473 156 14288 22228 28919 28919 1 NLISPELGVVFFNVPEK Unmodified 1901.0299 0.02985015 1509 P78559-2;P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 0 8 0 1 85.167 85.167 3 0.00011579 27296 TMT1-7 76.526 59.842 23.118 44.518 44.232 13.219 28.693 30.095 22 44 44 15 29 29 1 1 1 1 1 1 4145.1 14474 1509 14289 22229 28920 28920 1 NLISPRMEKALSQLALR Oxidation (M);Phospho (STY) 2035.0649 0.064945601 2621 Q9H211 CDT1 DNA replication factor Cdt1 yes yes 0 0 1 1 2 9 0 1 62.598 62.598 4 0.014784 16708 TMT1-8 40.962 7.6554 122.67 205.57 128.37 179.34 169.4 188.11 116 203 138 174 176 181 1 1 1 1 1 1 24527 14475 2621 14290 22230 28921 28921 301 12 1 NLKPIKPMQFLGDEETVR Unmodified 2114.1194 0.11941021 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 2 9 0 1 57.402 57.402 4 0.0099123 14715 TMT1-8 50.493 29.679 46.226 104.12 77.502 57.881 47.549 91.385 44 102 80 58 51 87 1 1 1 1 1 1 8442.1 14476 782 14291 22231 28922 28922 1 NLLDAVDQAK Unmodified 1085.5717 0.57168818 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 5 0 1 60.095 60.095 2 0.0044669 17934 TMT1-4 92.866 65.124 53.681 126.11 68.235 65.401 83.833 121.26 51 123 73 65 87 116 1 1 1 1 1 1 10221 14477 1770 14292 22232 28923 28923 1 NLLDEELQR Unmodified 1128.5775 0.57750184 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2.5 0.5 1 1 53.237 53.237 2 0.0005656 16307 TMT1-1 134.23 46.051 169.34 279.62 156.85 139.41 168.59 204.13 160 276 167 139 174 196 3 3 3 3 3 3 42438 14478 1833 14293 22233;22234 28924;28925;28926 28925 3 NLLDVIDQAR Unmodified 1155.6248 0.62478638 1594 Q05397-7;Q05397;Q05397-5;Q05397-2;Q05397-6 PTK2 Focal adhesion kinase 1 yes no 0 0 0 0 0 5.5 0.5 1 1 67.022 67.022 2 0.0001989 20880 TMT1-5 129.28 81.719 92.295 92.131 99.389 111.83 73.306 152.48 87 94 102 109 80 145 1 1 1 1 1 1 12415 14479 1594 14294 22235;22236 28927;28928 28928 2 NLLHVTDTGVGMTR Unmodified 1512.7719 0.77186132 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 9 0 1 48.167 48.167 3 0.00011429 11059 TMT1-8 76.358 58.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14480 708 14295 22237 28929 28929 1 NLLIFENLIDLK Unmodified 1443.8337 0.83371653 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 2 90.253 90.253 2;3 1.9283E-08 29160 TMT1-7 142.07 87.46 46.408 99.225 51.071 50.546 56.388 57.021 44 97 55 50 58 55 2 2 2 2 2 2 21728 14481 1507 14296 22238;22239 28930;28931 28930 2 NLLLSGAQLEASR Unmodified 1370.7518 0.75177781 2561 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 0 7 0 1 58.036 58.036 2 2.5468E-08 16755 TMT1-6 127.71 68.289 61.425 87.393 61.822 66.326 55.003 76.248 58 87 65 65 58 73 1 1 1 1 1 1 11446 14482 2561 14297 22240 28932 28932 1 NLLPATLQLIDTYASFTR Unmodified 2036.0942 0.094241321 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 94.096 94.096 3 3.4208E-09 28973 TMT1-8 93.684 62.294 39.303 36.11 36.337 29.916 50.41 45.466 37 37 37 29 51 44 2 2 2 1 2 2 6311.3 14483 1977 14298 22241 28933;28934 28933 2 NLLQVDLTK Unmodified 1042.6023 0.60226003 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 0 7.5 0.5 1 1 62.252 62.252 2;3 0.0036233 18425 TMT1-7 78.556 23.493 480.66 519.96 1009.1 737.05 850.85 889.28 456 535 994 744 875 857 2 2 2 2 2 2 63860 14484 760;850 14299 22242;22243 28935;28936 28936 2 NLLQVDLTKR Unmodified 1198.7034 0.70337105 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 1 9 0 1 52.926 52.926 3 0.0090437 12972 TMT1-8 75.566 30.207 238.53 186.99 327.29 219.34 202.18 337.48 225 196 323 222 214 322 1 1 1 1 1 1 22880 14485 760;850 14300 22244 28937 28937 1 NLLSFLR Unmodified 861.50724 0.50723743 477 P04839;Q9Y5S8-2;Q9Y5S8-3;Q9Y5S8 CYBB;NOX1 Cytochrome b-245 heavy chain;NADPH oxidase 1 yes no 0 0 0 0 0 9 0 1 68.925 68.925 2 0.034032 19219 TMT1-8 87.251 0 61.537 71.512 56.606 34.764 64.333 59.992 58 72 58 36 65 58 1 1 1 1 1 1 10157 14486 477 14301 22245 28938 28938 1 NLLSSWDEVIHIADQLR Unmodified 2008.0378 0.037789075 1876 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 0 7 0 1 87.381 87.381 3 0.00048094 28078 TMT1-6 53.327 28.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14487 1876 14302 22246 28939 28939 1 NLLSVAYK Unmodified 906.51747 0.51746776 1471;1422;1411;1588;909;984;985 P27348;P31946;P31946-2;P63104;P31947-2;P31947;P61981;P62258;P62258-2;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 0 7.2 3.12 1 1 3 57.249 57.249 2 0.0010485 14744 TMT1-8 150.05 74.315 11159 15244 13550 10421 13766 16521 10547 15247 13849 10510 14161 15867 7 7 7 7 7 7 1731900 14488 909;984;1471;985;1411;1422;1588 14303 22247;22248;22249;22250;22251 28940;28941;28942;28943;28944;28945;28946;28947 28945 8 NLLYVADSYNHK Unmodified 1435.7096 0.70957864 2197 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 0 7 0 1 53.113 53.113 3 0.00011367 14722 TMT1-6 97.69 73.398 129.95 230.34 145.18 108.01 131.64 225.43 123 227 152 109 138 215 1 1 1 1 1 1 17225 14489 2197 14304 22252 28948 28948 1 NLMFLVLR Unmodified 1004.5841 0.58410754 203 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 74.76 74.76 2 0.01065 21496 TMT1-8 89.298 45.163 38.045 65.889 42.199 28.375 42.895 53.142 36 65 44 29 44 51 1 1 1 1 1 1 7264.2 14490 203 14305 22253 28949 28949 1 NLNEKDYELLCLDGTR Unmodified 1951.9309 0.93094074 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 5 0 1 58.881 58.881 3 0.0021476 17444 TMT1-4 64.983 53.34 130.05 199.3 155.4 114.62 154.56 219.45 123 198 160 116 160 210 1 1 1 1 1 1 33582 14491 451 14306 22254 28950 28950 1 NLNHVSYGR Unmodified 1058.5257 0.52574104 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 29.264 29.264 3 0.0061425 4720 TMT1-8 65.404 36.066 23.437 21.661 9.99 11.095 17.677 18.684 22 22 11 11 18 18 1 1 1 1 1 1 809.95 14492 387 14307 22255 28951 28951 1 NLNLEEK Unmodified 858.4447 0.44469675 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 5 0 1 45.046 45.046 2 0.0097404 12067 TMT1-4 111.04 19.973 233.89 336.33 259.26 210.05 214.01 279.58 221 335 268 210 223 268 1 1 1 1 1 1 20209 14493 1762 14308 22256 28952 28952 1 NLPFDFTWK Unmodified 1166.576 0.57604528 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 9 0 1 75.623 75.623 2 0.0014706 21951 TMT1-8 123.88 66.294 199.61 352.87 235.76 209.2 333.71 389.16 189 348 247 210 341 374 2 2 2 2 2 2 56514 14494 1261 14309 22257 28953;28954 28954 2 NLPFSVENK Unmodified 1046.5397 0.53965977 729 P15954 COX7C Cytochrome c oxidase subunit 7C, mitochondrial yes yes 0 0 0 0 0 7 0 2 55.555 55.555 2;3 0.00030292 15666 TMT1-6 117.7 79.296 162.08 217.17 166.88 169.29 175.08 218.86 153 217 174 167 182 210 2 2 2 2 2 2 43772 14495 729 14310 22258;22259 28955;28956 28955 2 NLPGLVQEGEPFSEEATLFTK Unmodified 2305.1478 0.14779303 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 79.293 79.293 3 3.0453E-07 25651 TMT1-5 81.574 62.025 38.285 35.258 27.754 29.528 27.394 46.122 36 36 29 29 29 44 1 1 1 1 1 1 13990 14496 2071 14311 22260 28957 28957 1 NLPIYSEEIVEMYK Oxidation (M) 1742.8437 0.84368886 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 0 5.5 0.5 1 1 70.335 70.335 3 7.37E-07 21983 TMT1-4 104.95 79.633 238.48 310.95 231.79 180.31 255.38 272 225 311 240 182 261 262 2 2 2 2 2 2 71719 14497 1019 14312 22261;22262 28958;28959 28958 190 2 NLPIYSEEIVEMYK Unmodified 1726.8488 0.84877424 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 6 0.632 1 3 1 74.784 74.784 2;3;4 1.7446E-10 23807 TMT1-4 123.38 102.65 980.56 1261.1 1122.6 923.41 1043 1318.7 926 1265 1150 924 1081 1265 8 8 8 8 8 8 343660 14498 1019 14312 22263;22264;22265;22266;22267 28960;28961;28962;28963;28964;28965;28966;28967 28961 8 NLPLPPPPPPR Unmodified 1193.6921 0.69207809 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 7.5 0.5 2 2 52.282 52.282 2;3 2.5178E-06 14439 TMT1-7 131.06 59.682 522.37 635.07 574.49 471.26 552.73 727.23 493 639 588 472 573 697 9 9 9 9 9 9 35017 14499 1409;1410 14313 22268;22269;22270;22271 28968;28969;28970;28971;28972;28973;28974;28975;28976 28975 9 NLPQYVSNELLEEAFSVFGQVER Unmodified 2667.318 0.31804626 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 6.5 0.5 1 1 103.99 103.99 3 6.1735E-18 33458 TMT1-6 112.45 95.43 18.119 15.682 7.1799 14.841 1.7582 20.204 17 16 7 14 2 19 3 3 1 3 1 3 5090.4 14500 1837 14314 22272;22273 28977;28978;28979 28979 3 NLPSYPGPSK Unmodified 1058.5397 0.53965977 1786 Q14644 RASA3 Ras GTPase-activating protein 3 yes yes 0 0 0 0 0 7 0 1 47.004 47.004 3 0.033411 12289 TMT1-6 49.5 16.272 199.99 283.75 231.87 219.57 259.84 302.79 189 283 240 218 268 291 2 2 2 2 2 2 31463 14501 1786 14315 22274 28980;28981 28980 2 NLPYVYIPSK Unmodified 1192.6492 0.64921022 2771 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 0 0 9 0 1 63.989 63.989 3 0.041432 17300 TMT1-8 44.765 24.978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14502 2771 14316 22275 28982 28982 1 NLQAQYDR Unmodified 1006.4832 0.48320752 2623 Q9H267;Q9H267-2 VPS33B Vacuolar protein sorting-associated protein 33B yes no 0 0 0 0 0 3 0 1 33.312 33.312 2 0.03602 8784 TMT1-2 78.516 46.161 61.761 33.282 51.299 35.342 50.454 36.936 58 36 51 36 51 36 1 1 1 1 1 1 11160 14503 2623 14317 22276 28983 28983 1 NLQDAENFFQFQGDADDLK Unmodified 2213.9865 0.98654137 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 76.418 76.418 3 3.3383E-23 24335 TMT1-4 130 114.57 15.676 21.478 52.229 35.577 34.994 29.915 15 22 51 36 36 29 1 1 1 1 1 1 10023 14504 651 14318 22277 28984 28984 1 NLQDAMQVCR Unmodified 1233.5594 0.55942571 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6 0 1 45.923 45.923 2 0.0052841 12546 TMT1-5 91.095 61.679 92.462 85.04 77.36 81.522 69.496 90.759 87 87 80 80 73 87 1 1 1 1 1 1 7771.1 14505 1178 14319 22278 28985 28985 1 NLQEAEEWYK Unmodified 1308.5986 0.59863121 575 P08670;P41219-2;P41219 VIM;PRPH Vimentin;Peripherin yes no 0 0 0 0 0 3.33 1.7 1 1 1 57.832 57.832 2;3 2.3319E-10 17306 TMT1-3 175.64 156.86 1633 3156.2 1855.1 1890.2 2353.3 2838.8 1547 3099 1975 1871 2426 2726 5 5 5 5 5 5 518530 14506 575 14320 22279;22280;22281 28986;28987;28988;28989;28990 28987 5 NLQEEIDALESR Unmodified 1415.6892 0.68923713 2713 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 0 0 2 0 1 65.147 65.147 2 9.0882E-08 20777 TMT1-1 128.85 84.538 92.73 85.785 31.729 36.101 72.098 75.761 87 87 36 36 73 73 1 1 1 1 1 1 14619 14507 2713 14321 22282 28991 28991 1 NLQLLGATAIEDK Unmodified 1384.7562 0.75619449 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 6 0 1 65.15 65.15 3 0.00020356 20119 TMT1-5 88.075 66.525 46.339 119.54 45.46 51.987 55.662 76.23 44 116 51 51 58 73 1 1 1 1 1 1 6359.9 14508 2968 14322 22283 28992 28992 1 NLQNLLILTAIK Unmodified 1352.8391 0.83913625 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 9 0 1 81.14 81.14 3 1.4709E-08 24045 TMT1-8 133.05 89.153 323.65 514.94 351.57 316.02 447.56 433.88 306 510 368 316 456 419 2 2 2 2 2 2 89218 14509 1540 14323 22284 28993;28994 28994 2 NLQPASEYTVSLVAIK Unmodified 1731.9407 0.94070079 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 68.065 68.065 3 2.96E-16 20620 TMT1-6 138.19 101.04 77.152 109.01 105.39 126.19 104.88 97.211 73 109 109 123 109 94 1 1 1 1 1 1 32524 14510 442 14324 22285 28995 28995 1 NLQSEVEGVK Unmodified 1101.5666 0.5666028 2548 Q9BV40 VAMP8 Vesicle-associated membrane protein 8 yes yes 0 0 0 0 0 4 0 2 47.711 47.711 2;3 0.00016544 13326 TMT1-3 104.82 58.666 208.12 263.38 144.87 231.63 301.17 301.61 196 263 159 225 308 291 2 2 2 2 2 2 66376 14511 2548 14325 22286;22287 28996;28997 28996 2 NLQYYDISAK Unmodified 1213.5979 0.59790293 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 6.5 0.5 1 1 54.012 54.012 3 9.3831E-05 15755 TMT1-5 115.91 83.906 557.6 1002.7 654.05 639.23 784.36 915.7 528 988 689 634 808 880 3 3 3 3 3 3 130610 14512 1445 14326 22288;22289 28998;28999;29000 28999 3 NLREDGEK Unmodified 959.46722 0.46722311 480;577 P04899;P04899-4;P63096;P08754 GNAI2;GNAI1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha no no 0 0 0 0 1 3.5 0.5 1 1 28.467 28.467 3 0.0022278 5776 TMT1-3 105.52 89.859 539.99 885.91 646.65 576.03 623.27 787.04 511 877 673 573 647 755 2 2 2 2 2 2 52945 14513 480;577 14327 22290;22291 29001;29002 29002 2 NLSAQCQEVR Unmodified 1203.5666 0.56661958 1755 Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155 ARHGEF7 Rho guanine nucleotide exchange factor 7 yes no 0 0 0 0 0 4 0 1 32.624 32.624 2 0.00032199 7391 TMT1-3 89.171 38.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14514 1755 14328 22292 29003 29003 1 NLSDIDLMAPQPGV Unmodified 1468.7232 0.7231798 2368 Q96B49 TOMM6 Mitochondrial import receptor subunit TOM6 homolog yes yes 0 0 0 0 0 4.5 0.5 1 1 77.018 77.018 3 0.0033923 24599 TMT1-4 63.185 61.606 30.748 29.225 37.184 21.145 36.412 38.403 29 30 37 22 37 37 2 2 2 2 2 2 5912.5 14515 2368 14329 22293;22294 29004;29005 29005 2 NLSDLIDLVPSLCEDLLSSVDQPLK Unmodified 2782.431 0.43102711 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 7 0.707 1 2 1 108.61 108.61 4;5 2.6487E-15 33869 TMT1-7 103.29 84.726 121.8 150.08 141.56 103.92 127.87 127.47 115 151 144 105 131 123 8 8 8 8 8 8 35619 14516 1144;1145 14330 22295;22296;22297;22298 29006;29007;29008;29009;29010;29011;29012;29013 29012 8 NLSEQLLPK Unmodified 1040.5866 0.58660996 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 6.5 0.5 1 1 54.983 54.983 2 0.00012037 16102 TMT1-5 149.72 66.456 84.887 109.12 67.703 96.709 106.23 97.173 80 109 73 94 109 94 1 1 1 1 1 1 11767 14517 1314 14331 22299;22300 29014;29015 29014 2 NLSFFLTPPCAR Unmodified 1421.7126 0.71255553 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 9 0 1 70.399 70.399 3 0.00043539 19816 TMT1-8 81.709 57.858 38.899 72.763 73.103 29.65 50.679 37.996 37 72 73 29 51 37 2 2 2 1 2 2 6752.5 14518 1091 14332 22301 29016;29017 29016 2 NLSLAVSDCFWK Unmodified 1438.6915 0.69148574 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 8 0 1 71.833 71.833 3 0.0010526 22202 TMT1-7 77.912 66.22 53.888 72.724 78.651 73.507 84.78 82.861 51 73 80 73 87 80 1 1 1 1 1 1 7515.9 14519 220 14333 22302 29018 29018 1 NLSLSGHVGFDSLPDQLVNK Unmodified 2139.096 0.096032235 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 7 0 1 66.381 66.381 3 6.1839E-07 20029 TMT1-6 83.776 60.447 38.049 65.901 41.458 44.991 33.499 60.872 36 65 44 44 36 58 1 1 1 1 1 1 11775 14520 2757 14334 22303 29019 29019 1 NLSLSQQLK Unmodified 1029.5819 0.58185893 2407 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 0 8 0 1 50.499 50.499 2 1.8204E-09 13789 TMT1-7 178.22 93.654 129.67 190.7 226.08 118.32 140.48 228.38 123 191 225 123 147 218 1 1 1 1 1 1 21699 14521 2407 14335 22304 29020 29020 1 NLSPGAVESDVR Unmodified 1242.6204 0.62042929 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 3.5 0.5 1 1 44.464 44.464 2 1.0115E-07 13116 TMT1-2 128.68 76.821 170.65 170.14 208.77 165.64 236.25 178.74 161 174 210 167 239 174 3 3 3 3 3 3 43599 14522 1287 14336 22305;22306 29021;29022;29023 29021 3 NLSPVVSNELLEQAFSQFGPVEK Unmodified 2531.2908 0.29076888 2283 Q8WXF1-2;Q8WXF1 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 0 8 0 1 88.207 88.207 4 4.014E-10 28414 TMT1-7 90.475 75.547 23.302 36.396 20.167 29.99 26.859 61.062 22 36 22 29 29 58 1 1 1 1 1 1 5780 14523 2283 14337 22307 29024 29024 1 NLSPYVSNELLEEAFSQFGPIER Unmodified 2638.2915 0.29149716 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 6 0 1 91.449 91.449 3 6.9636E-13 30139 TMT1-5 97.059 77.681 16.001 15.721 30.14 29.085 43.376 38.204 15 15 30 29 44 37 1 1 2 2 2 2 15890 14524 857 14338 22308 29025;29026 29025 2 NLSQILSDREEIAHNMQSTLDDATDAWGIK Unmodified 3370.6099 0.60994754 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 1 6.5 0.5 1 1 78.82 78.82 4;5 1.9558E-62 25441 TMT1-5 157.09 135.32 292.83 338.54 271.53 289.31 261.31 410.42 276 341 283 284 276 392 4 4 4 4 4 4 59842 14525 906 14339 22309;22310 29027;29028;29029;29030 29027 4 NLSSNEAISLEEIR Unmodified 1573.7948 0.79476484 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 3 0 1 56.985 56.985 3 0.0019045 18014 TMT1-2 51.888 31.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14526 1507 14340 22311 29031 29031 1 NLSTFAVDGK Unmodified 1050.5346 0.53457439 0 P0DPI2;A0A0B4J2D5 yes no 0 0 0 0 0 6.5 0.5 1 1 53.684 53.684 2;3 1.2231E-19 14987 TMT1-6 167.12 135.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14527 0 14341 22312;22313 29032;29033 29033 2 NLSVEDAAR Unmodified 973.48287 0.48287317 457 P04040 CAT Catalase yes yes 0 0 0 0 0 2.5 0.5 1 1 38.163 38.163 2 0.00034251 10338 TMT1-1 140.45 75.194 630.02 892.42 657.76 526.26 735.15 1037.6 595 889 682 530 760 993 4 4 4 4 4 4 134590 14528 457 14342 22314;22315 29034;29035;29036;29037 29034 4 NLTALGLNLVASGGTAK Unmodified 1598.8992 0.89917033 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 1 71.353 71.353 2 1.0899E-45 20223 TMT1-8 190.86 150.14 34.983 43.883 34.328 40.742 49.546 56.15 33 44 36 40 51 54 1 1 1 1 1 1 10718 14529 981 14343 22316 29038 29038 1 NLTEENTEKELENFK Unmodified 1836.8741 0.87413737 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7;Q9Y6F6-6 MRVI1 Protein MRVI1 yes no 0 0 0 0 1 4 0 1 55.879 55.879 3 4.3141E-10 16593 TMT1-3 101.52 73.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14530 3056 14344 22317 29039 29039 1 NLTNPNTVIILIGNK Unmodified 1622.9356 0.93555583 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 9 0 1 72.054 72.054 3 4.8302E-27 20546 TMT1-8 163.99 116.7 331.26 352.64 291.59 325.66 299.15 447.71 312 357 304 319 315 428 2 2 2 2 2 2 101960 14531 1378 14345 22318 29040;29041 29041 2 NLTQYSWLLDGFPR Unmodified 1708.8573 0.85730551 2881 Q9UIJ7;Q9UIJ7-2 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 9 0 1 81.072 81.072 3 1.0265E-12 24051 TMT1-8 130.24 93.791 61.254 95.549 83.765 97.136 90.75 121.07 58 95 87 95 95 116 2 2 2 2 2 2 22099 14532 2881 14346 22319 29042;29043 29043 2 NLTVNYK Unmodified 850.45487 0.45486751 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 7 0 1 45.172 45.172 2 0.0079571 11610 TMT1-6 121.62 97.647 169.55 203.59 185.26 138.38 74.944 282.48 160 205 189 138 87 267 1 1 1 1 1 1 15687 14533 3063 14347 22320 29044 29044 1 NLTYSAPLYVDITK Unmodified 1596.8399 0.83992412 969 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 0 7 0 1 68.498 68.498 3 2.1161E-05 20823 TMT1-6 76.85 44.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14534 969 14348 22321 29045 29045 1 NLVCTDLFTR Unmodified 1237.6125 0.61250714 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 0 7 0 1 60.554 60.554 2 0.0001536 17683 TMT1-6 133.76 96.281 108.24 106.81 111.9 149.43 126.84 96.584 102 109 116 145 131 94 1 1 1 1 1 1 17696 14535 895 14349 22322 29046 29046 1 NLVDNITGQR Unmodified 1128.5887 0.58873523 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 48.21 48.21 2 0.0016687 13315 TMT1-4 101.82 69.677 138.73 228.14 114.15 102.18 133.31 184.88 131 225 123 102 138 177 1 1 1 1 1 1 16050 14536 1833 14350 22323 29047 29047 1 NLVDSYVAIINK Unmodified 1347.7398 0.73981614 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 8 0 1 71.538 71.538 3 0.00016362 22146 TMT1-7 94.191 80.991 160.87 194.21 208.76 158.86 190.47 210.96 152 196 211 160 196 203 2 2 2 2 2 2 38663 14537 1226 14351 22324 29048;29049 29049 2 NLVELAELELK Unmodified 1269.718 0.71801807 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 5.5 0.5 1 1 79.028 79.028 3 0.0013729 25381 TMT1-4 82.85 28.653 75.936 147.54 96.865 71.44 136.95 119.75 72 145 101 73 138 116 2 2 2 2 2 2 13487 14538 2928 14352 22325;22326 29050;29051 29050 2 NLVHSGATK Unmodified 925.49813 0.49812931 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 7 0 1 29.744 29.744 3 0.0020003 5546 TMT1-6 88.496 56.561 54.114 73.35 40.263 59.959 55.039 83.709 51 73 44 58 58 80 1 1 1 1 1 1 6942.4 14539 1739 14353 22327 29052 29052 1 NLVINLTQD Unmodified 1028.5502 0.55022446 2957 Q9Y274-2;Q9Y274 ST3GAL6 Type 2 lactosamine alpha-2,3-sialyltransferase yes no 0 0 0 0 0 5 0 1 69.291 69.291 2 0.0011063 21564 TMT1-4 83.265 58.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14540 2957 14354 22328 29053 29053 1 NLVLAGIK Unmodified 826.52764 0.52763852 2 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 9 0 1 57.968 57.968 2 0.001579 14889 TMT1-8 141.78 43.649 68.234 132.41 141.66 155.91 94.57 144.41 65 131 145 152 102 138 1 1 1 1 1 1 10709 14541 2 14355 22329 29054 29054 1 NLVNNLR Unmodified 841.477 0.47699993 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 7 0 1 40.255 40.255 2 0.001889 9610 TMT1-6 144.9 18.744 199.86 329.81 214.23 189.11 249.78 271.1 189 326 225 189 256 261 2 2 2 2 2 2 30448 14542 1079 14356 22330 29055;29056 29055 2 NLVNNLRK Unmodified 969.57196 0.57196295 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 1 9 0 1 39.568 39.568 3 0.0069674 7978 TMT1-8 72.492 24.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14543 1079 14357 22331 29057 29057 1 NLVPGESVYGEK Unmodified 1290.6456 0.6455814 841 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 0 5 0 1 51.743 51.743 3 0.0029874 14627 TMT1-4 69.602 57.456 122.93 175.02 109.49 110.03 137.01 279.65 116 174 116 109 145 266 1 1 1 1 1 1 23086 14544 841 14358 22332 29058 29058 1 NLVSWESQTQPQVQVQDEEITEDDLR Unmodified 3085.4476 0.44761646 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 3.5 0.5 1 1 68.218 68.218 3;4 1.4835E-11 22436 TMT1-2 87.92 74.672 46.55 73.716 48.854 37.488 65.511 52.497 44 73 51 37 66 51 2 2 2 1 2 2 13766 14545 147 14359 22333;22334 29059;29060 29059 2 NLVTEDVMR Unmodified 1075.5332 0.53319418 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 3.5 0.5 1 1 48.554 48.554 2 2.373E-06 13700 TMT1-3 165.15 110.99 194.25 504.53 287.09 286.27 257.61 430.77 185 491 306 282 273 411 1 1 1 1 1 1 61059 14546 516 14360 22335;22336 29061;29062 29062 2 NLVVIPK Unmodified 781.50617 0.5061748 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 0 9 0 1 54.38 54.38 2 0.012526 13464 TMT1-8 112.75 26.897 156.74 210.05 168.59 141.15 212.98 218.85 148 210 174 142 217 211 2 2 2 2 2 2 13638 14547 716 14361 22337 29063;29064 29063 2 NLWPFVSDPAPTASSQAAVSAR Unmodified 2271.1284 0.128395 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 8 0 1 69.922 69.922 3 1.7292E-09 21486 TMT1-7 88.836 73.907 46.488 57.356 73.068 50.34 55.738 76.228 44 58 73 51 58 73 1 1 1 1 1 1 42671 14548 1878 14362 22338 29065 29065 1 NLYDIGEQLDSEDLASLK Unmodified 2021.9793 0.97933072 1799 Q14790-3;Q14790-2;Q14790;Q14790-4;Q14790-9;Q14790-6;Q14790-5;Q14790-8;Q14790-7 CASP8 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 yes no 0 0 0 0 0 4 0 2 77.396 77.396 3;4 0.00013833 25040 TMT1-3 69.522 51.821 77.557 78.838 62.957 74.837 63.794 52.546 73 80 66 73 66 51 2 2 2 2 2 2 6614.7 14549 1799 14363 22339;22340 29066;29067 29066 2 NLYFTDWK Unmodified 1085.5182 0.51819605 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 8 0 1 65.654 65.654 3 0.031223 19726 TMT1-7 54.436 9.4755 273.09 363.52 320.67 272.18 377.59 428.42 258 364 329 273 387 412 1 1 1 1 1 1 13823 14550 704 14364 22341 29068 29068 1 NLYIISVK Unmodified 948.56442 0.56441796 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 9 0 1 61.54 61.54 2 0.0069161 16328 TMT1-8 121.96 49.133 329.78 379.64 337.21 285.61 366.36 493.76 311 383 346 286 379 473 1 1 1 1 1 1 40848 14551 1446 14365 22342 29069 29069 1 NLYSDDIPHALR Unmodified 1412.7048 0.70482762 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 4.5 0.5 1 1 48.605 48.605 3 0.007402 13768 TMT1-3 62.232 40.769 91.959 146.24 109.96 141.77 133.72 119.84 87 145 116 138 138 116 2 2 2 2 2 2 34016 14552 1353 14366 22343;22344 29070;29071 29070 2 NLYVTFPIPDLQK Unmodified 1546.8395 0.83953018 710 P14735 IDE Insulin-degrading enzyme yes yes 0 0 0 0 0 8 0 1 77.929 77.929 3 0.00088227 24563 TMT1-7 76.588 45.157 54.175 49.776 49.954 44.179 49.755 45.484 51 51 51 44 51 44 1 1 1 1 1 1 4307 14553 710 14367 22345 29072 29072 1 NMAEQIIQEIYSQIQSK Oxidation (M) 2038.0041 0.004105685 937 P29401;P29401-2 TKT Transketolase yes no 0 0 1 0 0 8 0 1 87.659 87.659 4 0.025983 28301 TMT1-7 40.856 23.367 23.335 28.932 20.947 22.532 14.12 15.587 22 29 22 22 15 15 1 1 1 1 1 1 3441 14554 937 14368 22346 29073 29073 173 1 NMAEQIIQEIYSQIQSK Unmodified 2022.0092 0.0091910629 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 8.5 0.5 2 2 96.063 96.063 3;4 2.6916E-31 29587 TMT1-8 157.98 134.85 165.23 231.87 166.13 141.68 192.46 206.64 156 231 173 142 197 199 5 5 5 5 5 5 77095 14555 937 14368 22347;22348;22349;22350 29074;29075;29076;29077;29078 29077 5 NMDPLNDNIATLLHQSSDK Unmodified 2125.011 0.010981977 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 5.5 0.5 1 1 67.402 67.402 3 1.0166E-30 20965 TMT1-5 148.06 119.09 326.52 513.74 411.88 420.8 496.67 447.41 309 510 428 416 508 433 3 3 3 3 3 3 119140 14556 1019 14369 22351;22352 29079;29080;29081 29080 3 NMDPLNDNIATLLHQSSDKFVSELWK Unmodified 3014.4808 0.48077127 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 8.5 0.5 1 1 84.531 84.531 4 8.8882E-39 25263 TMT1-8 126.59 108.5 162.12 218.37 158.64 182.59 133.46 286.14 153 218 167 178 145 272 3 3 3 3 3 3 41671 14557 1019 14370 22353;22354 29082;29083;29084 29084 3 NMFLQAVK Unmodified 949.50552 0.50552287 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 9 0 2 58.302 58.302 2;3 0.0010924 15035 TMT1-8 96.253 60.309 238.34 311.66 253.57 224.81 319.16 395.97 225 312 262 225 328 380 2 2 2 2 2 2 31867 14558 228 14371 22355;22356 29085;29086 29086 2 NMFQVIQPER Unmodified 1260.6285 0.62849155 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 7 0 1 56.739 56.739 2 0.0008675 16182 TMT1-6 104.39 90.815 92.246 91.995 107.73 94.919 74.597 137.52 87 94 109 94 80 131 1 1 1 1 1 1 9178.3 14559 1786 14372 22357 29087 29087 1 NMGAHAVVLELLQIPYEK Unmodified 2024.0765 0.076482767 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 8 0 1 76.43 76.43 3 0.00142 24078 TMT1-7 55.864 39.25 23.326 21.35 29.003 21.918 21.221 22.846 22 22 29 22 22 22 1 1 1 1 1 1 4713.4 14560 1785 14373 22358 29088 29088 1 NMGGPYGGGNYGPGGSGGSGGYGGR Unmodified 2188.8981 0.89807748 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 4.5 0.5 1 1 43.445 43.445 3 2.2509E-20 11422 TMT1-4 116.45 113.52 30.849 28.426 20.951 22.276 27.727 46.113 29 29 22 22 29 44 1 1 1 1 1 1 12246 14561 848 14374 22359;22360 29089;29090 29090 2 NMINTFVPSGK Unmodified 1206.6067 0.60669348 1714 Q13510-2;Q13510 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 9 0 1 58.32 58.32 3 0.0064466 15118 TMT1-8 59.57 20.304 61.361 79.658 79.252 49.818 63.897 52.543 58 80 80 51 65 51 1 1 1 1 1 1 10443 14562 1714 14375 22361 29091 29091 1 NMLFSGTNIAAGK Unmodified 1322.6653 0.66527099 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 9 0 1 59.961 59.961 3 0.009032 15670 TMT1-8 52.265 28.589 183.8 189.62 326.84 183.56 246.09 294.66 174 195 321 190 253 283 1 1 1 1 1 1 25736 14563 748 14376 22362 29092 29092 1 NMLFSGTNITSGK Unmodified 1368.6708 0.6707503 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 9 0 1 58.848 58.848 3 2.3935E-09 15257 TMT1-8 110.91 76.675 262.09 380.78 351.25 267.9 333.81 490.43 248 380 358 270 347 469 2 2 2 2 2 2 45517 14564 2344 14377 22363 29093;29094 29093 2 NMLQFNLQILPK Unmodified 1457.8065 0.80645592 144 O15371-2;O15371-3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 0 9 0 1 76.85 76.85 3 0.00060471 22369 TMT1-8 77.062 49.948 54.022 73.096 55.805 51.477 49.969 29.488 51 73 58 51 51 29 1 1 1 1 1 1 7215.6 14565 144 14378 22364 29095 29095 1 NMMAACDPR Unmodified 1064.4202 0.42015503 537;1493;1713;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB8;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-3 chain no no 0 0 0 0 0 5 0 1 36.114 36.114 2 0.030206 8484 TMT1-4 73.931 45.532 61.482 95.105 45.799 75.589 78.161 59.598 58 94 51 73 80 58 1 1 1 1 1 1 9481.4 14566 537;1493;1932;1713 14379 22365 29096 29096 1 NMQNVEHVPLSLDR Unmodified 1650.8148 0.81478877 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 5 0 1 48.027 48.027 3 0.0014026 13259 TMT1-4 68.044 42.867 123.08 112.82 138.13 85.319 81.855 152.23 116 116 138 87 87 145 1 1 1 1 1 1 24906 14567 813 14380 22366 29097 29097 1 NMSVIAHVDHGK Unmodified 1306.6452 0.64520425 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6.33 0.471 2 1 37.645 37.645 3;4 1.5379E-05 9189 TMT1-5 106.32 51.623 492.64 742.87 610.82 558.28 692.21 722.18 466 739 631 556 710 696 3 3 3 3 3 3 52684 14568 685 14381 22367;22368;22369 29098;29099;29100 29099 3 NMTIPEDILGEIAVSIVR Unmodified 1969.0554 0.055412974 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 7 0 1 97.685 97.685 3 0.00035325 31686 TMT1-6 65.47 44.012 7.3983 15.362 5.9188 15.627 22.059 6.8325 7 15 7 15 22 7 1 1 1 1 1 1 2740.2 14569 1130 14382 22370 29101 29101 1 NMYELHK Unmodified 933.43784 0.43783723 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 6 0 1 39.866 39.866 3 0.008253 10136 TMT1-5 85.064 23.065 61.277 110.72 66.96 113.89 66.945 121.75 58 109 73 109 73 116 1 1 1 1 1 1 6599.7 14570 60 14383 22371 29102 29102 1 NNALNQVVLWDK Unmodified 1412.7412 0.74121312 1367 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 0 7 0 1 64.83 64.83 2 2.0358E-16 19380 TMT1-6 148.28 108.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14571 1367 14384 22372 29103 29103 1 NNASTDYDLSDK Unmodified 1341.5685 0.56845329 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 2.5 0.5 1 1 43.306 43.306 3 1.3487E-05 12329 TMT1-1 107.65 77.314 307.39 401.01 294.66 291.52 419.48 492.25 290 401 308 290 430 473 2 2 2 2 2 2 51941 14572 1061 14385 22373;22374 29104;29105 29104 2 NNAYLAQSPQLYK Unmodified 1508.7623 0.7623425 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 52.56 52.56 2 0.0068266 14546 TMT1-6 73.951 60.598 23.116 35.876 51.991 20.69 13.691 30.523 22 36 51 22 15 29 1 1 1 1 1 1 4341.3 14573 714 14386 22375 29106 29106 1 NNDFYVTGESYAGK Unmodified 1563.6842 0.68415175 2635 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 0 4 0 1 53.017 53.017 3 0.00011753 15465 TMT1-3 67.326 46.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14574 2635 14387 22376 29107 29107 1 NNEDCVEIYIK Unmodified 1395.634 0.63403044 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 3.5 0.5 1 1 55.61 55.61 2;3 2.0199E-07 16413 TMT1-3 152.7 133.92 198.93 307.61 208.99 166.83 172.79 258.37 188 305 218 167 181 247 2 2 2 2 2 2 39639 14575 733 14388 22377;22378 29108;29109 29109 2 NNEDISIIPPLFTVSVDHR Unmodified 2165.1117 0.1116823 1243 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 0 6 0 1 73.982 73.982 3 2.6308E-17 23536 TMT1-5 117.29 81.182 46.5 64.944 64.611 35.647 50.147 45.473 44 65 65 37 51 44 2 2 2 2 2 2 16205 14576 1243 14389 22379 29110;29111 29110 2 NNEEWTVDSCTECHCQNSVTICK Unmodified 2870.1364 0.13641155 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 4.5 0.5 1 1 48.505 48.505 4 8.9385E-13 13683 TMT1-3 92.426 90.203 246.26 325.39 354.67 219.04 305.72 307.88 233 327 356 225 312 297 3 3 3 3 3 3 66492 14577 554 14390 22380;22381 29112;29113;29114 29112 3 NNEVSFSQIKPK Unmodified 1389.7252 0.72522871 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 1 7.5 0.5 1 1 47.149 47.149 3 0.0013129 12461 TMT1-6 79.639 55.962 245.92 272.47 275.73 289.33 189.11 319.73 232 276 283 283 204 305 2 2 2 2 2 2 20957 14578 1658 14391 22382;22383 29115;29116 29115 2 NNFAVGYR Unmodified 939.45626 0.45626449 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 6 0 1 40.201 40.201 2 0.0027954 10278 TMT1-5 134.85 63.136 244.08 536.09 362.28 347.53 423.61 510.25 232 525 380 345 437 490 2 2 2 2 2 2 43157 14579 1119 14392 22384 29117;29118 29118 2 NNFEGEVTK Unmodified 1036.4825 0.48253882 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 4 0 1 42.053 42.053 2 0.00043112 11108 TMT1-3 137.98 100.78 337.92 359.45 430.17 411.09 432.04 423.67 319 366 436 407 445 409 2 2 2 2 2 2 68765 14580 530 14393 22385 29119;29120 29119 2 NNFSDGFR Unmodified 955.41479 0.41479361 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 5 0 1 40.848 40.848 2 0.0063121 10372 TMT1-4 106.91 81.461 61.286 79.45 91.984 104.34 88.566 144.58 58 80 94 102 94 138 1 1 1 1 1 1 10718 14581 2744 14394 22386 29121 29121 1 NNICLDLSPSHGLDGR Unmodified 1766.837 0.83698078 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 5 0 1 51.512 51.512 3 0.0032551 14586 TMT1-4 57.525 36.224 115.71 152.59 79.754 104.19 135.45 119.79 109 152 87 102 138 116 1 1 1 1 1 1 9292.3 14582 2061 14395 22387 29122 29122 1 NNIDVFYFSTLYPLHILFVEDGK Unmodified 2743.3898 0.38975464 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 9 0 2 94.204 94.204 3;4 0.00013763 29009 TMT1-8 54.235 40.504 39.005 50.393 74.258 33.84 57.559 45.262 37 51 73 36 58 44 2 2 2 2 2 2 5407.4 14583 1637 14396 22388;22389 29123;29124 29124 2 NNIPYFETSAK Unmodified 1282.6194 0.61936665 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 6 0 2 53.588 53.588 2;3 2.068E-07 15537 TMT1-5 152.64 120.77 331.61 325.55 255.65 318.88 366.58 381.83 312 331 269 312 377 368 2 2 2 2 2 2 118410 14584 1237 14397 22390;22391 29125;29126 29125 2 NNKDSHSLTTNIMEILR Unmodified 1985 2.33601E-05 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 7.5 0.5 1 1 57.371 57.371 4 1.1439E-24 16454 TMT1-6 150.11 126.66 663.79 880.75 582.93 517.79 609.04 1096.6 626 879 612 516 641 1045 4 4 4 4 4 4 111010 14585 437 14398 22392;22393 29127;29128;29129;29130 29128 4 NNLAGAEELFAR Unmodified 1303.6521 0.65206377 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4.5 0.5 1 1 58.572 58.572 2 1.0683E-18 17310 TMT1-4 188.6 128.01 299.21 460.1 357.24 314.07 358.89 399.1 283 457 370 313 370 384 3 3 3 3 3 3 97632 14586 1540 14399 22394;22395 29131;29132;29133 29133 3 NNLELSTPLK Unmodified 1127.6186 0.61863837 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 6 0 1 53.471 53.471 2 0.00011111 15508 TMT1-5 138.25 112.31 115.77 121.44 97.242 117.91 163.86 157.36 109 123 102 116 167 152 1 1 1 1 1 1 19179 14587 529 14400 22396 29134 29134 1 NNLIQQK Unmodified 856.47667 0.47666558 2724 Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;Q5VZF2-3;Q5VZF2-2;Q5VZF2;Q9NUK0-4;Q9NUK0-3;Q9NUK0-2;Q9NUK0 MBNL1;MBNL2;MBNL3 Muscleblind-like protein 1;Muscleblind-like protein 2;Muscleblind-like protein 3 yes no 0 0 0 0 0 7 0 1 39.525 39.525 2 0.0032605 9384 TMT1-6 139.92 71.518 77.16 124.14 91.336 56.908 55.436 76.236 73 123 94 58 58 73 1 1 1 1 1 1 6170.3 14588 2724 14401 22397 29135 29135 1 NNLSFIETSALDSTNVEEAFK Unmodified 2328.1121 0.11213581 1880 Q15907;Q15907-2 RAB11B Ras-related protein Rab-11B yes no 0 0 0 0 0 5 0 2 78.264 78.264 3;4 5.8591E-25 25150 TMT1-4 140.97 120.88 130.39 166.8 125.16 132.83 153.74 188.56 123 167 131 131 159 181 2 2 2 2 2 2 65061 14589 1880 14402 22398;22399 29136;29137 29137 2 NNPEPWNK Unmodified 997.46174 0.4617438 73 O00483 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 0 0 0 0 0 5 0 1 42.47 42.47 2 0.010918 11030 TMT1-4 98.582 47.95 299.93 396.26 290.8 239.62 169.33 414.11 283 396 302 238 186 393 1 1 1 1 1 1 29905 14590 73 14403 22400 29138 29138 1 NNPPTIVHDK Unmodified 1133.5829 0.58292157 238 O60784;O60784-2;O60784-3;O60784-4 TOM1 Target of Myb protein 1 yes no 0 0 0 0 0 5 0 1 33.962 33.962 3 0.00012952 7673 TMT1-4 110.39 103.53 146.83 111.61 114.26 85.579 143.63 119.56 138 116 116 87 145 116 1 1 1 1 1 1 9397.6 14591 238 14404 22401 29139 29139 1 NNPPTIVQDK Unmodified 1124.5826 0.58258722 2063 Q6ZVM7-5;Q6ZVM7;Q6ZVM7-3 TOM1L2 TOM1-like protein 2 yes no 0 0 0 0 0 5 0 1 41.819 41.819 3 0.0071545 10729 TMT1-4 67.214 23.257 145.62 233.45 213.79 164.97 256.4 293.3 138 232 218 167 262 282 1 1 1 1 1 1 9235.4 14592 2063 14405 22402 29140 29140 1 NNPPTLEGNYSKPLK Unmodified 1670.8628 0.86278482 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 1 7 0 1 46.872 46.872 3 0.00013253 12284 TMT1-6 83.751 68.115 99.484 83.167 161.08 146.94 103.63 105.77 94 87 160 145 109 102 1 1 1 1 1 1 16080 14593 3054 14406 22403 29141 29141 1 NNPPTLVGDFTK Unmodified 1301.6616 0.66156582 2825 Q9P289;Q9P289-2 STK26 Serine/threonine-protein kinase 26 yes no 0 0 0 0 0 6 0 2 56.927 56.927 2;3 0.0075639 16897 TMT1-5 62.042 32.893 153.61 211.6 152.39 138.71 161.55 196.86 145 211 159 138 167 189 2 2 2 2 2 2 28812 14594 2825 14407 22404;22405 29142;29143 29142 2 NNPSKPLHVIK Unmodified 1245.7194 0.71935547 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 1 6.5 3.2 1 2 1 37.198 37.198 3;4 2.566E-06 7090 TMT1-8 114.76 79.876 2911 3987.7 3477.7 2820.7 3411.5 3978 2751 3987 3565 2829 3516 3823 6 6 6 6 6 6 230160 14595 250 14408 22406;22407;22408;22409 29144;29145;29146;29147;29148;29149 29148 6 NNPVHLITEEDLK Unmodified 1520.7835 0.78347187 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 4 0 1 52.877 52.877 3 3.3378E-07 15416 TMT1-3 116.51 102.6 76.787 154.41 128.28 85.453 105.95 120.63 73 152 131 87 109 116 1 1 1 1 1 1 11662 14596 327 14409 22410 29150 29150 1 NNQFQALLQYADPVSAQHAK Unmodified 2242.1131 0.11307928 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 7 0 1 66.082 66.082 4 1.6448E-05 19882 TMT1-6 72.421 57.949 92.272 147.11 56.676 97.938 75.814 98.041 87 145 65 94 80 94 1 1 1 1 1 1 12616 14597 901 14410 22411 29151 29151 1 NNQITNNQR Unmodified 1100.5323 0.53228298 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 3.5 0.5 1 1 21.881 21.881 2 1.166E-05 3723 TMT1-3 156.62 110.64 99.186 54.097 55.464 55.316 79.423 49.968 93 58 57 55 80 49 2 2 2 2 2 2 14990 14598 397 14411 22412;22413 29152;29153 29153 2 NNRPSEGPLQTR Unmodified 1367.6906 0.69057454 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 4.5 0.5 1 1 25.945 25.945 3 0.0064407 4542 TMT1-4 66.989 33.9 35.032 32.146 36.142 40.102 77.824 25.495 33 33 37 40 77 26 2 2 2 2 2 2 8275.9 14599 1540 14412 22414;22415 29154;29155 29155 2 NNSNDIVNAIMELTM Unmodified 1677.7702 0.77020634 36 Q13765;E9PAV3-2;E9PAV3 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 0 6 0 1 102.66 102.66 2 0.00049146 33818 TMT1-5 80.979 55.543 0 0 4.328 0 4.184 0 0 0 4 0 4 0 0 0 1 0 1 0 762.33 14600 36 14413 22416 29156 29156 1 NNTQVLINCR Unmodified 1230.6139 0.61390412 1433 P62316-2;P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 0 6 0 1 38.357 38.357 2 6.0217E-05 9557 TMT1-5 144.65 109.7 30.601 35.291 56.786 83.02 55.041 52.795 29 36 58 80 58 51 1 1 1 1 1 1 7273.8 14601 1433 14414 22417 29157 29157 1 NNTVGLIQLNRPK Unmodified 1465.8365 0.83651049 952 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 1 9 0 1 47.274 47.274 3 8.4993E-10 10704 TMT1-8 119.62 90.828 65.787 72.182 63.076 58.169 77.899 90.519 62 73 65 58 80 87 1 1 1 1 1 1 8982.6 14602 952 14415 22418 29158 29158 1 NNVLVLYSK Unmodified 1048.5917 0.59169534 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 8.5 0.5 1 1 57.051 57.051 2 0.00088408 16415 TMT1-7 127.4 87.855 215.4 242.81 200.25 253.99 215.11 249.7 203 245 210 247 225 240 2 2 2 2 2 2 23341 14603 1780 14416 22419;22420 29159;29160 29159 2 NNVSLLQSCIDLFK Unmodified 1649.8447 0.84469192 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 8 0 1 75.464 75.464 3 0.00026055 23633 TMT1-7 62.357 40.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14604 3038 14417 22421 29161 29161 1 NNVVINYK Unmodified 962.51853 0.5185304 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 7 0 1 45.628 45.628 2 0.0088576 11815 TMT1-6 101.28 44.003 23.138 52.128 34.442 28.419 65.138 45.045 22 51 36 29 65 44 1 1 1 1 1 1 6345.3 14605 2028 14418 22422 29162 29162 1 NPADLPK Unmodified 753.4021 0.40210366 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 5 0 1 40.962 40.962 2 0.024489 10374 TMT1-4 94.114 71.095 122.87 167.28 126.96 92.51 141.7 166.52 116 167 131 94 145 160 1 1 1 1 1 1 35119 14606 685 14419 22423 29163 29163 1 NPAVLSAASFDGR Unmodified 1303.6521 0.65206377 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 6 0 1 52.788 52.788 2 6.3851E-08 15250 TMT1-5 104.94 68.411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14607 336 14420 22424 29164 29164 1 NPCTDGTHDCNK Unmodified 1417.5351 0.53506145 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 3.5 1.36 1 1 3 3 1 1 26.081 26.081 3;4 4.3082E-11 4710 TMT1-3 162.52 122.14 1214.8 966.73 1491 1183.1 1697.9 906.68 1145 1009 1486 1193 1705 896 14 14 14 14 14 14 217230 + 14608 32;554 14421 22425;22426;22427;22428;22429;22430;22431;22432;22433;22434 29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175;29176;29177;29178;29179 29172 15 NPDADKGPWCFTTDPSVR Unmodified 2061.9214 0.92143869 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 1 6 0 1 54.697 54.697 3 3.504E-05 16002 TMT1-5 66.182 50.059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14609 401 14422 22435 29180 29180 1 NPDDITNEEYGEFYK Unmodified 1832.7741 0.77408897 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 2.8 0.748 2 2 1 60.159 60.159 2;3;4 1.7707E-17 19300 TMT1-2 149.3 129.58 980.34 1380.3 1059 877.15 1204.8 1300.3 926 1376 1096 881 1233 1252 6 6 6 6 6 6 295550 14610 545 14423 22436;22437;22438;22439;22440 29181;29182;29183;29184;29185;29186 29184 6 NPDDITQEEYGEFYK Unmodified 1846.7897 0.78973904 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 3 0.816 1 1 1 60.758 60.758 3 2.9564E-17 19169 TMT1-1 145.52 140.52 531.75 812.98 650.91 531.01 678.69 817.44 503 808 671 533 699 785 5 5 5 5 5 5 223040 14611 561 14424 22441;22442;22443 29187;29188;29189;29190;29191 29187 5 NPDEIDETTELSS Unmodified 1448.6155 0.61546307 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 2 0 1 54.304 54.304 2 0.002229 16579 TMT1-1 79.659 54.1 38.178 27.405 52.464 19.794 59.802 29.208 36 29 51 22 59 29 1 1 1 1 1 1 14001 14612 758 14425 22444 29192 29192 1 NPDGDVGGPWCYTTNPR Unmodified 1904.8112 0.81115996 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 4 0 1 52.967 52.967 3 0.0043854 15446 TMT1-3 40.759 33.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14613 401 14426 22445 29193 29193 1 NPEFFEHR Unmodified 1074.4883 0.4882929 163 O43252 PAPSS1 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 0 0 0 0 0 4 0 1 38.158 38.158 3 0.029145 9606 TMT1-3 56.013 33.233 53.637 134.62 68.447 49.191 131.45 96.453 51 131 73 51 131 94 1 1 1 1 1 1 5188.7 14614 163 14427 22446 29194 29194 1 NPEILAIAPVLLDALTDPSR Unmodified 2117.1732 0.17321992 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 7.5 0.5 1 1 100.59 100.59 3 8.2355E-06 32785 TMT1-7 76.733 64.351 23.384 21.513 19.036 30.433 6.8831 18.992 22 22 19 29 8 18 3 3 2 3 2 3 5334.1 14615 2308 14428 22447;22448 29195;29196;29197 29197 3 NPELQNLLLDDFFK Unmodified 1704.8723 0.87228688 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 6 0 1 86.79 86.79 3 1.228E-05 28516 TMT1-5 97.836 87.914 92.383 101.01 77.11 65.641 101.1 74.933 87 102 80 66 102 73 2 2 2 2 2 2 15213 14616 1260 14429 22449 29198;29199 29198 2 NPEPELLVR Unmodified 1065.5819 0.58185894 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 3.5 0.5 1 1 48.514 48.514 2 0.00020299 14775 TMT1-2 145.84 88.661 344.03 487.62 376.27 330.45 473.59 539.74 325 486 390 331 485 519 2 2 2 2 2 2 111460 14617 1792 14430 22450;22451 29200;29201 29200 2 NPESLFLLEEVR Unmodified 1444.7562 0.75619449 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 5 0 1 71.449 71.449 3 0.0004323 22392 TMT1-4 86.467 52.274 30.615 59.074 34.303 21.341 35.099 45.902 29 58 36 22 36 44 1 1 1 1 1 1 12616 14618 44 14431 22452 29202 29202 1 NPETDTYILFNPWCEDDAVYLDNEK Unmodified 3060.3335 0.33349791 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 4.5 0.5 1 1 84.893 84.893 3 4.2056E-05 27960 TMT1-3 55.986 44.675 16.003 23.171 29.644 30.194 44.094 15.817 15 22 30 30 44 15 1 1 2 2 2 1 10183 14619 393 14432 22453;22454 29203;29204 29203 2 NPETDTYILFNPWCEDDAVYLDNEKER Unmodified 3345.4772 0.47720203 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 5 0 1 76.707 76.707 4 1.0855E-05 24518 TMT1-4 62.683 52.167 23.101 59.581 34.305 21.464 28.571 22.637 22 58 36 22 29 22 1 1 1 1 1 1 9935.9 14620 393 14433 22455 29205 29205 1 NPFDTFFGQR Unmodified 1227.5673 0.5672715 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 0 9 0 1 69.799 69.799 2 0.026083 19649 TMT1-8 68.49 41.187 84.586 132.03 98.82 71.747 114.42 105.47 80 131 102 73 116 102 1 1 1 1 1 1 14399 14621 886 14434 22456 29206 29206 1 NPFGNAGLLLGEAGK Unmodified 1456.7674 0.76742787 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 2 70.716 70.716 2;3 5.5997E-06 21809 TMT1-7 98.676 78.57 145.07 263.21 281.73 178.56 190.06 226.96 138 261 283 182 197 218 2 2 2 2 2 2 51191 14622 1194 14435 22457;22458 29207;29208 29208 2 NPGNQAAYEHFETMK Oxidation (M) 1751.7573 0.75733347 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 4.5 0.5 1 1 40.807 40.807 3 0.00012764 10691 TMT1-3 87.251 69.113 99.489 138.23 113.54 71.333 89.827 152.01 94 138 116 73 94 145 2 2 2 2 2 2 27349 14623 776 14436 22459;22460 29209;29210 29209 146 2 NPGNQAAYEHFETMK Unmodified 1735.7624 0.76241885 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.67 0.471 1 2 45.543 45.543 3;4 1.8061E-19 12276 TMT1-4 163.8 139.25 813.88 771.91 696.68 546.95 616.14 1033.5 766 788 713 549 647 986 4 4 4 4 4 4 199870 14624 776 14436 22461;22462;22463 29211;29212;29213;29214 29213 4 NPHPSSAFLNLIGFVSR Unmodified 1854.9741 0.97406661 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 9 0 1 70.918 70.918 3 1.8117E-08 20090 TMT1-8 87.157 63.068 37.939 89.34 40.056 44.912 42.135 53.164 36 87 44 44 44 51 1 1 1 1 1 1 15701 14625 1279 14437 22464 29215 29215 1 NPIDHVSFYCK Unmodified 1378.634 0.63397086 3006 Q9Y3Z3;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 7 0 2 50.223 50.223 3;4 3.4784E-06 13578 TMT1-6 121.04 69.949 428.37 559.43 386.57 332.98 422.69 587.03 404 559 404 333 438 562 2 2 2 2 2 2 59758 14626 3006 14438 22465;22466 29216;29217 29216 2 NPILWNVADVVIK Unmodified 1479.8449 0.84494991 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 9 0 1 80.422 80.422 2 0.00023829 23743 TMT1-8 95.417 68.448 30.596 43.91 50.433 44.007 57.385 36.739 29 44 51 44 58 36 1 1 1 1 1 1 7393 14627 479 14439 22467 29218 29218 1 NPILWNVADVVIKFPEEEAPSTVLSQNLFTPK Unmodified 3594.8974 0.897386 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 1 8 0 1 94.777 94.777 5 0.018593 30831 TMT1-7 30.048 21.285 23.22 36.165 34.301 53.066 33.64 45.944 22 36 36 51 36 44 1 1 1 1 1 1 5223.2 14628 479 14440 22468 29219 29219 1 NPITGFGK Unmodified 832.4443 0.44430282 1735 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 8.5 0.5 1 1 50.676 50.676 2 0.0070737 11998 TMT1-8 96.668 68.156 884.13 1286.6 1257.5 858.76 1263.2 1420.1 837 1285 1273 876 1292 1366 4 4 4 4 4 4 149060 14629 1735 14441 22469;22470 29220;29221;29222;29223 29222 4 NPLGSTHPEATLK Unmodified 1363.7096 0.70957864 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 6 0 1 42.468 42.468 3 3.3812E-12 11164 TMT1-5 117.2 77.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14630 1229 14442 22471 29224 29224 1 NPLIAGK Unmodified 711.42792 0.42792448 1433 P62316-2;P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 0 8 0 1 45.307 45.307 2 0.010537 11730 TMT1-7 107.66 57.619 221.01 220.46 177.81 301.48 259.89 405.13 208 224 190 290 275 387 1 1 1 1 1 1 41419 14631 1433 14443 22472 29225 29225 1 NPLPEYLSR Unmodified 1087.5662 0.56620887 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 5 0 1 51.927 51.927 2 0.01149 14738 TMT1-4 86.882 47.629 128.61 339.93 277.67 192.4 222.54 298.53 123 332 284 195 231 286 1 1 1 1 1 1 25970 14632 1552 14444 22473 29226 29226 1 NPLPSKETIEQEK Unmodified 1511.7831 0.78313752 1435 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 0 0 0 0 1 5.67 0.471 1 2 47.182 47.182 3;4 1.1605E-10 12902 TMT1-4 133.16 106.45 1326.4 1982.7 2071.4 1541.2 1393.3 2596.5 1257 1980 2094 1547 1485 2473 4 4 4 4 4 4 261460 14633 1435 14445 22474;22475;22476 29227;29228;29229;29230 29227 4 NPLYVEKPK Unmodified 1086.6073 0.6073454 2596 Q9C0I1 MTMR12 Myotubularin-related protein 12 yes yes 0 0 0 0 1 8 0 1 44.625 44.625 3 0.0021792 11474 TMT1-7 75.387 48.058 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14634 2596 14446 22477 29231 29231 1 NPNAMLVNLEEPLASTYQDILYQAK Unmodified 2834.416 0.41604575 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 6.67 0.471 1 2 90.461 90.461 3;4 1.5106E-10 29270 TMT1-6 73.981 72.189 46.513 73.614 55.139 66.567 63.368 76.01 44 73 58 65 66 73 2 2 2 2 2 2 11615 14635 1139 14447 22478;22479;22480 29232;29233;29234 29234 3 NPNAVLTLVDDNLAPEYQK Unmodified 2113.0691 0.069148783 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 5.5 0.5 1 1 75.239 75.239 3 1.6232E-13 23916 TMT1-4 112.56 94.458 153.5 233.95 152.15 138.29 184.6 196.21 145 232 160 138 189 189 2 2 2 2 2 2 47383 14636 1723 14448 22481;22482 29235;29236 29235 2 NPNGPYPYTLK Unmodified 1262.6295 0.62953741 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 7 0 1 50.548 50.548 2 0.00061604 13740 TMT1-6 74.944 24.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14637 713 14449 22483 29237 29237 1 NPNTSEPQHLLVMK Unmodified 1606.8137 0.81372614 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 6 0 1 47.191 47.191 3 0.0089557 13037 TMT1-5 38.028 15.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14638 481 14450 22484 29238 29238 1 NPPAAYIQK Unmodified 1000.5342 0.53418046 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 7 0 1 44.675 44.675 2 0.0089518 11457 TMT1-6 90.37 31.125 30.771 35.765 27.768 29.394 34.472 53.382 29 36 29 29 36 51 1 1 1 1 1 1 4824.3 14639 356 14451 22485 29239 29239 1 NPPGFAFVEFEDPR Unmodified 1620.7573 0.75725712 1895;1524 P84103-2;P84103;Q16629-3;Q16629-2;Q16629-4;Q16629 SRSF3;SRSF7 Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7 no no 0 0 0 0 0 5 0 1 69.878 69.878 3 2.1257E-05 21749 TMT1-4 92.939 77.738 37.873 74.046 64.162 34.447 57.275 52.732 36 73 65 36 58 51 1 1 1 1 1 1 38463 14640 1524;1895 14452 22486 29240 29240 1 NPPGFAFVEFEDPRDAADAVR Unmodified 2319.092 0.09200949 1524 P84103-2;P84103 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 0 1 4.67 0.471 1 2 68.559 68.559 3;4 1.0461E-17 21241 TMT1-4 117.77 72.511 162.08 225.8 159.54 176.69 211.88 233.8 153 225 168 174 218 225 3 3 3 3 3 3 73573 14641 1524 14453 22487;22488;22489 29241;29242;29243 29242 3 NPPGFAFVEFEDPRDAEDAVR Unmodified 2377.0975 0.097488798 1895 Q16629-3;Q16629-2;Q16629-4;Q16629 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 1 4.67 0.471 1 2 68.193 68.193 3;4 5.9034E-10 21434 TMT1-3 92.932 77.51 137.58 197.76 154.03 146.69 138.99 172.99 130 197 160 145 145 166 3 3 3 3 3 3 60929 14642 1895 14454 22490;22491;22492 29244;29245;29246 29244 3 NPQNSSQSADGLR Unmodified 1372.6331 0.63311924 619 P0DN76;Q01081 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 0 0 3 0 2 28.742 28.742 2;3 6.266E-16 6863 TMT1-2 134.98 86.416 23.22 44.8 26.928 36.933 43.052 37.148 22 44 29 36 44 36 1 1 1 1 1 1 5234.8 14643 619 14455 22493;22494 29247;29248 29248 2 NPSGLTQYIPVLVDSFLPLLK Unmodified 2313.2984 0.29842044 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 9 0 2 109.1 109.1 3;4 0.0010164 33817 TMT1-8 51.029 23.38 0 0 7.574 0 15.449 7.0212 0 0 7 0 15 7 0 0 1 0 1 1 1046 14644 2308 14456 22495;22496 29249;29250 29250 2 NPSIVGVLCTDSQGLNLGCR Unmodified 2159.0463 0.046321626 177 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 0 7 0 1 68.575 68.575 3 4.275E-10 20831 TMT1-6 98.702 91.341 38.24 35.134 35.369 28.772 43.427 37.137 36 36 36 29 44 36 1 1 1 1 1 1 10141 14645 177 14457 22497 29251 29251 1 NPSSAGSWNSGSSGPGSTGNR Unmodified 1962.8416 0.84160846 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 6 2.58 1 1 1 1 1 1 35.267 35.267 3 2.6036E-24 8335 TMT1-5 138.04 123.28 232.71 237.36 201.47 134.86 180.66 301.85 219 241 206 137 187 288 6 7 7 6 6 7 163590 14646 437 14458 22498;22499;22500;22501;22502;22503 29252;29253;29254;29255;29256;29257;29258 29255 7 NPSTSLGPTLEPEEVVNR Unmodified 1937.9694 0.96943474 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 3 0 1 56.034 56.034 3 0.00073839 17604 TMT1-2 62.002 42.248 30.882 20.962 21.743 14.536 29.936 22.598 29 22 22 15 30 22 1 1 1 1 1 1 7031.5 14647 2204 14459 22504 29259 29259 1 NPSVNWK Unmodified 843.4239 0.42390173 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 8 0 1 44.253 44.253 2 0.037813 11322 TMT1-7 87.181 55.809 68.908 94.356 60.652 82.376 77.043 83.082 65 94 65 80 80 80 1 1 1 1 1 1 9095.6 14648 1310 14460 22505 29260 29260 1 NPTKDGDDAHEAK Unmodified 1396.6219 0.62188585 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 4 0 1 27.812 27.812 4 0.0015856 5495 TMT1-3 73.887 42.247 326.18 216.54 178.97 317.33 227.09 212.05 306 227 192 304 238 205 1 1 1 1 1 1 16495 14649 856 14461 22506 29261 29261 1 NPVGYPLAWQFLR Unmodified 1559.8249 0.82488317 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 75.885 75.885 2 9.802E-19 21979 TMT1-8 167.1 130.41 54.124 42.08 64.959 57.766 93.382 66.625 51 44 65 58 94 65 1 1 1 1 1 1 14674 14650 2791 14462 22507 29262 29262 1 NPVIAQK Unmodified 768.44939 0.4493882 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 7 0 1 38.984 38.984 2 0.010537 9151 TMT1-6 107.66 46.697 130.4 184.1 108.92 109.83 149.85 119.38 123 183 116 109 152 116 1 1 1 1 1 1 25428 14651 986 14463 22508 29263 29263 1 NPVNYFAEVEQIAFDPSNMPPGIEASPDK Unmodified 3175.4808 0.48083085 457 P04040 CAT Catalase yes yes 0 0 0 0 0 5.5 0.5 1 1 91.528 91.528 4 8.7131E-07 30270 TMT1-4 65.581 46.701 38.182 90.406 38.97 67.832 47.348 83.929 36 88 44 65 51 80 2 3 3 3 3 3 7975.6 14652 457 14464 22509;22510 29264;29265;29266 29264 3 NPVTIFSLATNEMWR Unmodified 1777.8821 0.88214006 1587 Q04837 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 83.785 83.785 3 4.4769E-11 25068 TMT1-8 113.52 55.718 23.083 83.273 17.354 30.015 34.444 53.383 22 80 22 29 36 51 1 1 1 1 1 1 17533 14653 1587 14465 22511 29267 29267 1 NPWGEVEWTGAWSDSSSEWNNVDPYER Unmodified 3196.3435 0.34348574 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5 0 1 81.025 81.025 4 0.00055104 26124 TMT1-4 46.847 42.362 39.343 36.222 29.477 37.024 88.29 29.461 37 37 29 37 87 30 2 2 1 2 2 2 11778 14654 536 14466 22512 29268;29269 29268 2 NPWGEVEWTGR Unmodified 1329.6102 0.61019895 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 6 0 1 59.108 59.108 2 6.6229E-09 17744 TMT1-5 129 97.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14655 761 14467 22513 29270 29270 1 NPYYGGESASITPLEDLYK Unmodified 2116.0001 6.61646E-05 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 5 0 1 70.197 70.197 3 4.4463E-13 21892 TMT1-4 104.89 84.803 84.175 153.55 149.69 115.36 133.07 174.22 80 152 152 116 138 167 1 1 1 1 1 1 52980 14656 1217 14468 22514 29271 29271 1 NPYYGGESASITPLEDLYKR Unmodified 2272.1012 0.10117719 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 1 6 0 1 62.427 62.427 3 0.00042816 19098 TMT1-5 61.276 40.68 30.625 66.656 26.252 21.822 35.077 45.903 29 65 29 22 36 44 1 1 1 1 1 1 28945 14657 1217 14469 22515 29272 29272 1 NPYYGGESSSITPLEELYK Unmodified 2146.0106 0.010630851 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 5 0 2 69.836 69.836 3;4 1.0818E-09 21761 TMT1-4 95.666 83.47 191.21 276.25 270.66 210.02 237.57 233.07 181 276 275 211 244 225 2 2 2 2 2 2 73267 14658 972 14470 22516;22517 29273;29274 29274 2 NPYYGGESSSITPLEELYKR Unmodified 2302.1117 0.11174188 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 6 0 1 62.088 62.088 3 1.4249E-13 18915 TMT1-5 88.945 72.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14659 972 14471 22518 29275 29275 1 NQADCIPFFR Unmodified 1266.5815 0.58154136 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 6.5 0.5 1 1 59.217 59.217 2 0.0027826 17192 TMT1-6 98.254 54.742 299.69 440.93 292.6 236.23 401.6 325.4 283 438 306 239 405 316 2 2 2 2 2 2 52666 14660 489 14472 22519;22520 29276;29277 29277 2 NQAIEELEK Unmodified 1072.5401 0.5400537 2825 Q9P289;Q9P289-2;Q9P289-3 STK26 Serine/threonine-protein kinase 26 yes no 0 0 0 0 0 2 0 1 49.318 49.318 2 0.0008584 14653 TMT1-1 127.76 84.519 53.995 56.832 74.137 26.199 57.397 60.19 51 58 73 29 58 58 1 1 1 1 1 1 5479.4 14661 2825 14473 22521 29278 29278 1 NQALFPACVLK Unmodified 1259.6696 0.66962808 2291 Q92499;Q92499-3;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 9 0 1 63.321 63.321 2 0.0009288 17061 TMT1-8 93.649 53.297 30.701 51.758 26.093 45.459 57.318 36.74 29 51 29 44 58 36 1 1 1 1 1 1 6012 14662 2291 14474 22522 29279 29279 1 NQALGTHRPVNK Unmodified 1333.7215 0.72148073 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 1 8 0 1 26.586 26.586 4 0.014052 4691 TMT1-7 57.019 32.166 30.806 28.307 28.224 29.198 43.407 37.137 29 29 29 29 44 36 1 1 1 1 1 1 2861.3 14663 2131 14475 22523 29280 29280 1 NQDATVYVGGLDEK Unmodified 1507.7155 0.71545188 1854 Q15427 SF3B4 Splicing factor 3B subunit 4 yes yes 0 0 0 0 0 4 0 1 52.965 52.965 3 1.9479E-05 15439 TMT1-3 93.909 72.663 198.97 300.18 207.74 180.39 269.27 293.99 188 298 217 181 275 283 2 2 2 2 2 2 21434 14664 1854 14476 22524 29281;29282 29281 2 NQDEESQEAPELLK Unmodified 1628.753 0.7529596 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 2 0 1 50.506 50.506 3 0.0002146 15114 TMT1-1 78.932 69.648 54.079 80.808 39.803 60.242 41.43 53.184 51 80 44 58 44 51 1 1 1 1 1 1 6710 14665 2219 14477 22525 29283 29283 1 NQDLAPNSAEQASILSLVTK Unmodified 2098.0906 0.090612506 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 0 6 0 1 73.262 73.262 3 7.1835E-10 23310 TMT1-5 94.837 76.472 77.444 93.634 69.361 81.177 113.21 127.89 73 94 73 80 116 123 1 1 1 1 1 1 21583 14666 1654 14478 22526 29284 29284 1 NQDNLQGWNK Unmodified 1215.5632 0.56324876 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 0 6 0 1 44.893 44.893 2 1.4956E-20 12131 TMT1-5 196.52 127.78 61.272 79.409 94.468 48.644 78.081 97.976 58 80 94 51 80 94 1 1 1 1 1 1 9914.6 14667 953 14479 22527 29285 29285 1 NQEQLAAELAEFTAK Unmodified 1661.8261 0.82606496 1015 P35241;P35241-5;P35241-4;P35241-2 RDX Radixin yes no 0 0 0 0 0 5 0 1 72.952 72.952 3 2.8457E-08 22973 TMT1-4 114.54 110.57 77.416 109.75 60.404 66.253 63.398 45.095 73 109 65 65 65 44 1 1 1 1 1 1 17121 14668 1015 14480 22528 29286 29286 1 NQEQLLTLASILR Unmodified 1497.8515 0.85149185 3040 Q9Y5Z4;Q9Y5Z4-2 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 0 8 0 1 75.823 75.823 2 1.1253E-11 23766 TMT1-7 153.49 108.47 53.824 95.209 70.425 57.859 71.097 75.789 51 94 73 58 73 73 1 1 1 1 1 1 18212 14669 3040 14481 22529 29287 29287 1 NQETYETLK Unmodified 1124.535 0.53496832 957 P30273 FCER1G High affinity immunoglobulin epsilon receptor subunit gamma yes yes 0 0 0 0 0 4 0 1 42.126 42.126 3 0.00039704 11117 TMT1-3 107.45 46.102 217.36 276.67 203.56 182.5 170.09 316.01 205 277 212 181 181 301 1 1 1 1 1 1 29123 14670 957 14482 22530 29288 29288 1 NQFNLEDPHQK Unmodified 1368.6422 0.64222736 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 5 0 1 40.369 40.369 3 2.7689E-07 10194 TMT1-4 105.46 61.272 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14671 322 14483 22531 29289 29289 1 NQGATCYMNSLLQTLFFTNQLR Unmodified 2619.2574 0.25737703 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 0 9 0 1 93.088 93.088 3 0.022768 28565 TMT1-8 32.896 20.219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14672 2339 14484 22532 29290 29290 1 NQGDFSLSVR Unmodified 1121.5465 0.54653606 936 P29350;P29350-3;P29350-4 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 46.295 46.295 2 3.5611E-06 12533 TMT1-4 154.84 100.23 207.47 375.08 339.64 202.48 245.71 310.66 197 371 344 208 254 298 1 1 1 1 1 1 45351 14673 936 14485 22533 29291 29291 1 NQGGGLSSSGAGEGQGPK Unmodified 1586.7285 0.72847619 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 4 0 1 33.605 33.605 3 3.2477E-10 7807 TMT1-3 107.65 86.354 30.549 43.78 58.406 35.219 34.461 45.921 29 44 58 36 36 44 1 1 1 1 1 1 8566.7 14674 543 14486 22534 29292 29292 1 NQGGYGGSSSSSSYGSGR Unmodified 1693.6928 0.69281896 601 P09651-3;P09651-2;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 0 3 0 1 27.443 27.443 3 1.7187E-30 6316 TMT1-2 170 166.77 38.141 58.603 32.156 69.312 48.342 52.987 36 58 36 66 51 51 2 2 2 2 2 2 16186 14675 601 14487 22535 29293;29294 29293 2 NQGIEEALK Unmodified 1000.5189 0.51892433 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 2.67 1.25 1 1 1 46.538 46.538 2;3 4.6E-28 12794 TMT1-3 207.68 118.54 4995.7 6259 5721.1 4520 5617 6898.8 4717 6289 5844 4544 5795 6622 5 5 5 5 5 5 852570 14676 776 14488 22536;22537;22538 29295;29296;29297;29298;29299 29298 5 NQGNLYDK Unmodified 950.44576 0.44575938 2248 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 0 5 0 1 37.438 37.438 2 0.0046122 9030 TMT1-4 76.1 25.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14677 2248 14489 22539 29300 29300 1 NQIGDKEK Unmodified 930.47706 0.47705951 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5 0 1 31.897 31.897 3 0.010915 6889 TMT1-4 80.755 9.4125 525.65 217.87 377.14 362.27 348.26 248.03 493 244 378 358 357 242 1 1 1 1 1 1 89896 14678 640 14490 22540 29301 29301 1 NQINALTSFVDASMVYGSEEPLAR Oxidation (M) 2627.2537 0.25373144 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 1 0 0 6 0 1 77.939 77.939 3 6.5011E-05 25129 TMT1-5 64.152 49.991 15.892 14.523 21.863 22.206 28.536 22.638 15 15 22 22 29 22 1 1 1 1 1 1 6242 14679 489 14491 22541 29302 29302 72 1 NQINALTSFVDASMVYGSEEPLAR Unmodified 2611.2588 0.25881682 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 6.5 0.5 1 1 84.863 84.863 3 3.1508E-18 27812 TMT1-5 112.41 100.56 47.824 50.458 34.744 45.382 33.994 45.934 45 51 37 44 36 44 2 2 2 2 2 2 34922 14680 489 14491 22542;22543 29303;29304;29305 29303 3 NQKDPGVLDR Unmodified 1140.5887 0.58873523 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 1 5 0 1 33.736 33.736 3 0.0014458 7566 TMT1-4 93.839 72.593 562.45 1183.3 587.09 562.71 706.19 1162 533 1157 634 559 738 1109 1 1 1 1 1 1 70405 14681 987 14492 22544 29306 29306 1 NQLDQEVEFLSTSIAQLK Unmodified 2062.0582 0.058249746 2466 Q99471;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 0 6.5 0.5 1 1 89.729 89.729 3 4.6341E-06 29511 TMT1-5 85.146 67.446 50.859 65.915 52.616 60.235 59.361 79.322 48 66 55 59 62 76 3 3 3 3 3 3 15202 14682 2466 14493 22545;22546 29307;29308;29309 29307 3 NQLEESEFTCAAAVK Unmodified 1695.7774 0.77740021 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 4 0 1 54.943 54.943 3 1.296E-05 16222 TMT1-3 71.98 52.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14683 2306 14494 22547 29310 29310 1 NQLESLQR Unmodified 986.51451 0.51450765 37 L0R6Q1 SLC35A4 yes yes 0 0 0 0 0 4 0 1 36.866 36.866 2 0.0031949 9102 TMT1-3 132.76 99.829 77.374 78.33 94.097 56.605 62.779 76.027 73 80 94 58 65 73 1 1 1 1 1 1 10464 14684 37 14495 22548 29311 29311 1 NQLIEQFPGIEPWLNQIMPK Unmodified 2394.2406 0.24058798 2909 Q9ULC4-2;Q9ULC4;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 0 9 0 1 91.154 91.154 3 0.00037857 27858 TMT1-8 56.529 31.735 15.736 36.755 29.199 21.911 20.964 30.316 15 36 30 22 22 29 1 1 1 1 1 1 4539 14685 2909 14496 22549 29312 29312 1 NQLLGPDENAK Unmodified 1197.599 0.59896556 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 4 0 1 44.618 44.618 3 3.5427E-06 12130 TMT1-3 120.86 98.026 417.22 534.17 478.85 361.31 309.18 443.16 394 536 489 362 326 424 1 1 1 1 1 1 68295 14686 936 14497 22550 29313 29313 1 NQLSTLPEELGDLPLVR Unmodified 1893.0207 0.020742027 275 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 yes yes 0 0 0 0 0 5 0 1 76.64 76.64 3 0.00040829 24478 TMT1-4 68.42 46.547 30.446 66.158 56.744 42.414 63.981 60.002 29 65 58 43 65 58 1 1 1 1 1 1 6030.5 14687 275 14498 22551 29314 29314 1 NQLTAMSSVLAK Unmodified 1261.67 0.67002202 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 60.784 60.784 3 0.00072064 16004 TMT1-8 73.881 35.525 115.6 137.17 111.77 110.64 97.458 120.87 109 138 116 109 102 116 1 1 1 1 1 1 7751.6 14688 1754 14499 22552 29315 29315 1 NQLTSNPENTVFDAK Unmodified 1676.8006 0.8005785 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 5 0 1 54.121 54.121 3 2.7403E-11 15624 TMT1-4 127.66 105.89 1178.9 1660.9 1166.2 1132.2 1485.5 1587.5 1113 1654 1222 1125 1522 1529 1 1 1 1 1 1 238380 14689 640 14500 22553 29316 29316 1 NQNDPLPGR Unmodified 1009.4941 0.49410656 287 O75534-2;O75534;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 0 3 0 1 32.32 32.32 2 0.00026003 8264 TMT1-2 111.95 88.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14690 287 14501 22554 29317 29317 1 NQNSQISTEK Unmodified 1147.5469 0.54692999 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 31.448 31.448 2 1.0903E-08 6923 TMT1-3 137.89 66.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14691 251 14502 22555 29318 29318 1 NQNSWGTGEDVK Unmodified 1333.5899 0.58985744 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 4.5 0.5 1 1 42.026 42.026 3 7.6638E-06 11121 TMT1-3 111.72 76.83 298.5 537.99 410.55 324.07 413.74 402.87 283 531 424 326 423 389 2 2 2 2 2 2 63023 14692 816 14503 22556;22557 29319;29320 29319 2 NQPEVDMSDR Unmodified 1189.5034 0.50335062 1851 Q15404 RSU1 Ras suppressor protein 1 yes yes 0 0 0 0 0 2 0 1 35.03 35.03 2 0.00012332 8922 TMT1-1 136.96 107.65 77.487 93.754 62.065 50.485 82.907 168.19 73 94 65 51 87 160 2 2 2 2 2 2 8763 14693 1851 14504 22558 29321;29322 29321 2 NQQIFLR Unmodified 917.5083 0.50830006 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 7 0 1 43.665 43.665 2 0.0095576 10978 TMT1-6 111.81 63.698 122.51 225.64 137.98 106.65 226.65 171.55 116 222 145 109 227 167 1 1 1 1 1 1 31315 14694 1464 14505 22559 29323 29323 1 NQQTIGAR Unmodified 886.46208 0.46207815 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 4 0 1 23.784 23.784 2 0.032875 4078 TMT1-3 79.713 51.458 14.861 14.713 14.638 14.236 10.313 15.696 14 15 15 14 11 15 1 1 1 1 1 1 815.94 14695 2073 14506 22560 29324 29324 1 NQSFCPTVNLDK Unmodified 1421.6609 0.66091389 1131 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 0 6 0 1 52.933 52.933 3 0.00018197 15290 TMT1-5 92.906 72.782 274.07 507.99 394.49 290.45 276.39 396.13 260 501 406 292 290 379 1 1 1 1 1 1 35073 14696 1131 14507 22561 29325 29325 1 NQTAEKEEFEHQQK Unmodified 1744.8016 0.80164113 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 1 3 1 1 1 34.655 34.655 4 6.5246E-19 8088 TMT1-3 161.84 112.79 1459.4 2064.1 2203 1619.2 2407.5 1773.3 1382 2067 2224 1643 2431 1728 3 3 3 3 3 3 201200 14697 641 14508 22562;22563 29326;29327;29328 29328 3 NQTLQNEILGHTPR Unmodified 1619.838 0.83796706 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 46.375 46.375 3 1.7053E-06 12576 TMT1-4 103.6 92.342 53.475 141.73 89.696 72.71 92.145 82.651 51 138 94 73 94 80 1 1 1 1 1 1 8320.5 14698 651 14509 22564 29329 29329 1 NQVALNPQNTVFDAK Unmodified 1657.8424 0.84238373 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 6.5 0.5 1 1 56.557 56.557 3 1.3405E-10 16748 TMT1-5 120.3 109.04 410.6 493.08 544.88 440.98 397.04 580.3 388 498 551 440 418 555 3 3 3 3 3 3 75058 14699 618 14510 22565;22566 29330;29331;29332 29331 3 NQVAMNPTNTVFDAK Unmodified 1648.7879 0.78790532 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 6.75 0.829 2 1 1 55.556 55.556 2;3 3.4444E-34 16291 TMT1-5 197.43 176.59 414.08 599.54 590.44 391.89 480.2 600.31 392 599 597 399 496 576 4 4 4 4 4 4 180720 14700 641 14511 22567;22568;22569;22570 29333;29334;29335;29336 29333 4 NQVEDLLATLEK Unmodified 1371.7246 0.72456001 2298 Q92542-2;Q92542 NCSTN Nicastrin yes no 0 0 0 0 0 5 0 1 77.37 77.37 3 0.037375 24706 TMT1-4 45.79 12.844 46.598 33.917 74.471 50.389 48.699 67.9 44 36 73 51 51 65 1 1 1 1 1 1 5938.2 14701 2298 14512 22571 29337 29337 1 NQVFEPSCLDAFPNLK Unmodified 1877.8982 0.89818405 927 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 0 7 0 1 71.312 71.312 4 0.027289 21934 TMT1-6 39.776 24.01 53.926 104.13 45.685 66.84 78.82 52.117 51 102 51 65 80 51 1 1 1 1 1 1 3665.5 14702 927 14513 22572 29338 29338 1 NQVSLTCLVK Unmodified 1160.6223 0.62234354 420;421;422 P0DOX5;P01857;P01860;P01859 IGHG1;IGHG3;IGHG2 Ig gamma-1 chain C region;Ig gamma-3 chain C region;Ig gamma-2 chain C region no no 0 0 0 0 0 8 0 2 56.662 56.662 2;3 4.8505E-14 16184 TMT1-7 182.64 129.92 590.63 822.43 484.42 435.71 578.05 799 557 818 514 435 598 765 2 2 2 2 2 2 187750 14703 420;422;421 14514 22573;22574 29339;29340 29339 2 NQVSQLLPEK Unmodified 1154.6295 0.62953741 3006 Q9Y3Z3;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 6 0 2 52.458 52.458 2;3 0.00070894 15091 TMT1-5 109.16 70.134 276.71 368.74 248.53 256.81 319.09 416.23 261 368 262 254 330 399 2 2 2 2 2 2 72003 14704 3006 14515 22575;22576 29341;29342 29341 2 NQWIDNVEK Unmodified 1144.5513 0.55128709 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 2.16 1 1 1 52.002 52.002 2;3 2.1638E-11 14782 TMT1-4 179.81 146.95 2232.6 2923.1 2623.2 1921.8 3005.6 3142.1 2109 2930 2676 1953 3061 3028 5 5 5 5 5 5 394740 14705 776 14516 22577;22578;22579 29343;29344;29345;29346;29347 29345 5 NRDEAIK Unmodified 844.44028 0.44028008 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 3 1.41 1 1 1 1 1 26.238 26.238 3 0.002438 4854 TMT1-3 130.27 57.011 4056.4 5400.8 4901 3960.6 5296 4872.9 3833 5410 5011 3982 5397 4713 10 10 10 10 10 10 325370 14706 1019 14517 22580;22581;22582;22583;22584 29348;29349;29350;29351;29352;29353;29354;29355;29356;29357 29354 10 NRDELNGFFNK Unmodified 1352.6473 0.64731274 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 1 5 0 1 50.726 50.726 3 0.017924 14323 TMT1-4 61.958 61.68 289.2 520.22 365.77 309.79 326.78 456.52 274 513 381 309 341 437 1 1 1 1 1 1 26803 14707 876 14518 22585 29358 29358 1 NRLEEVSPNLVR Unmodified 1424.7736 0.77357588 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 1 5 0 1 41.371 41.371 3 9.7835E-11 10601 TMT1-4 161.23 141.39 37.714 88.713 78.491 57.378 71.119 75.789 36 87 80 58 73 73 1 1 1 1 1 1 9239.2 14708 929 14519 22586 29359 29359 1 NRPEDYQGGR Unmodified 1190.5428 0.54284767 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 1 2 0.816 1 1 1 22.05 22.05 3 2.8597E-05 4207 TMT1-2 141.29 127.52 213.26 291.72 338.06 276.6 261.56 298.48 202 293 341 276 272 287 4 4 4 4 4 4 48792 14709 1827 14520 22587;22588;22589 29360;29361;29362;29363 29362 4 NRPPLEEDDEEGE Unmodified 1527.6325 0.63251011 565 P08514;P08514-2 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 2 0 1 36.611 36.611 2 4.1358E-09 9621 TMT1-1 130.79 110.48 176.97 243.83 166.69 184.54 178.48 251.81 167 243 176 181 187 241 1 1 1 1 1 1 84095 14710 565 14521 22590 29364 29364 1 NRPPLPAGTNSK Unmodified 1250.6731 0.67313356 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 8 0 1 32.918 32.918 3 0.00023272 6893 TMT1-7 96.551 69.953 123.08 151.68 104.55 82.227 120.2 136.22 116 152 109 83 123 131 1 1 1 1 1 1 16357 14711 1089;1090 14522 22591 29365 29365 1 NRPSSGSLIQVVTTEGR Unmodified 1799.949 0.94897407 587 P09417-2;P09417 QDPR Dihydropteridine reductase yes no 0 0 0 0 1 7 0 1 46.544 46.544 3 3.2697E-05 12152 TMT1-6 79.863 52.22 30.623 59.097 32.883 53.175 32.316 84.358 29 58 36 51 36 80 1 1 1 1 1 1 13406 14712 587 14523 22592 29366 29366 1 NRPTSISWDGLDSGK Unmodified 1631.7903 0.79034816 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 1 6 0 1 49.439 49.439 3 6.9624E-05 13973 TMT1-5 88.319 57.491 192.17 189.33 183.25 200.29 160.3 211.82 181 193 189 196 169 203 1 1 1 1 1 1 55309 14713 954 14524 22593 29367 29367 1 NRQEGLMIASSLLNEGYLQPAGDMSK Unmodified 2821.3739 0.37386335 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 7 0 1 71.595 71.595 4 1.4539E-28 22029 TMT1-6 118.22 99.108 46.23 104.13 76.779 74.082 60.143 129.4 44 102 80 73 65 123 1 1 1 1 1 1 15682 14714 567 14525 22594 29368 29368 1 NSALSAQLR Unmodified 958.51959 0.51959303 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 6 0 1 37.31 37.31 2 0.034331 9138 TMT1-5 72.275 28.158 108.2 145.55 85.706 150.93 130.11 212.69 102 145 94 145 138 203 1 1 1 1 1 1 9738.4 14715 1146 14526 22595 29369 29369 1 NSAQGNVYVK Unmodified 1078.5407 0.5407224 1779 Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 0 0 0 6 0 1 36.853 36.853 3 0.0050977 8944 TMT1-5 72.652 45.323 122.97 159.99 116.93 133.27 156.6 135.18 116 160 123 131 160 131 1 1 1 1 1 1 8206 14716 1779 14527 22596 29370 29370 1 NSCISEEERDAYEELLTQAEIQGNINK Unmodified 3152.4568 0.45680094 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 1 4 0 1 72.116 72.116 4 4.1476E-08 22968 TMT1-3 74.274 50.179 30.727 35.641 35.37 28.93 35.043 37.376 29 36 36 29 36 36 1 1 1 1 1 1 8278.2 14717 1723 14528 22597 29371 29371 1 NSCISGERGEEQSAIPYFPFIPDQPFR Unmodified 3140.4662 0.46618384 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 1 7 0 1 73.929 73.929 4 0.00020805 22993 TMT1-6 52.465 41.361 38.298 35.294 25.601 77.804 24.404 68.594 36 36 29 73 29 65 1 1 1 1 1 1 6865.5 14718 1934 14529 22598 29372 29372 1 NSDEADLVPAK Unmodified 1157.5564 0.55643205 1518 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 0 0 3 0 1 46.223 46.223 2 0.00015319 13822 TMT1-2 110.66 75.854 38.07 50.849 50.723 27.305 72.795 67.213 36 51 51 29 73 65 1 1 1 1 1 1 6731.7 14719 1518 14530 22599 29373 29373 1 NSDIELR Unmodified 845.4243 0.42429566 362 Q12968;Q14934-6;O95644-10;Q14934-10;Q12968-2;Q14934-9;Q14934-8;Q14934;Q14934-7;O95644-6;Q14934-14;Q14934-5;Q14934-4;O95644;Q14934-3;Q14934-2;Q12968-4;Q12968-3;Q14934-12;Q14934-11;O95644-4;O95644-11;Q14934-15;Q14934-16;Q14934-17;Q12968-6;Q14934-13;Q14934-18;O95644-2;O95644-5;Q12968-5;O95644-8;O95644-3;Q14934-20;Q14934-19;O95644-17;Q14934-21 NFATC3;NFATC4;NFATC1 Nuclear factor of activated T-cells, cytoplasmic 3;Nuclear factor of activated T-cells, cytoplasmic 4;Nuclear factor of activated T-cells, cytoplasmic 1 yes no 0 0 0 0 0 2 0 1 39.57 39.57 2 0.0031566 10791 TMT1-1 87.754 0.057861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14720 362 14531 22600 29374 29374 1 NSDSLPHR Unmodified 924.44134 0.44134271 2566 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 0 0 3 0 1 23.553 23.553 3 0.045867 4815 TMT1-2 48.423 26.337 15.915 29.699 5.0128 15.692 21.507 22.838 15 29 7 15 22 22 1 1 1 1 1 1 1752 14721 2566 14532 22601 29375 29375 1 NSEGLHSAR Unmodified 969.46281 0.46280643 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 3 0 1 17.873 17.873 3 0.0023583 3172 TMT1-2 85.958 51.266 5.2915 9.1421 4.6092 5.0644 6.6932 11.535 5 9 5 5 7 11 1 1 1 1 1 1 546.66 14722 1142 14533 22602 29376 29376 1 NSEPAGLETPEAK Unmodified 1341.6412 0.64122431 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 2 0 1 43.06 43.06 3 0.0073277 12173 TMT1-1 41.542 19.344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14723 543 14534 22603 29377 29377 1 NSEPEEVIPSR Unmodified 1255.6044 0.60444487 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 2 0 1 39.575 39.575 2 0.0010823 10779 TMT1-1 100.09 69.35 46.647 73.987 32.262 45.244 49.193 60.424 44 73 36 44 51 58 1 1 1 1 1 1 8761.9 14724 1297 14535 22604 29378 29378 1 NSEQIVEVGEELINEYASK Unmodified 2150.0379 0.037908234 1809 Q15006 EMC2 ER membrane protein complex subunit 2 yes yes 0 0 0 0 0 4 0 1 88.697 88.697 3 1.3487E-05 29312 TMT1-3 61.181 51.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14725 1809 14536 22605 29379 29379 1 NSETFPTILEEAK Unmodified 1477.73 0.73003931 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 4 0 1 63.837 63.837 3 8.0691E-05 19699 TMT1-3 94.717 61.032 176.7 223.66 228.69 180.1 217.99 264.54 167 225 232 181 225 254 2 2 2 2 2 2 23275 14726 228 14537 22606 29380;29381 29380 2 NSFREQLEEEEEAK Unmodified 1736.7853 0.78532236 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 2 0 1 47.448 47.448 3 8.1586E-17 13871 TMT1-1 147.51 132.08 77.103 116.43 107.38 71.518 99.514 113.35 73 116 109 73 102 109 1 1 1 1 1 1 13092 14727 1019 14538 22607 29382 29382 1 NSFSFSDEK Unmodified 1059.4509 0.45090434 2655 Q9H4X1-2;Q9H4X1 RGCC Regulator of cell cycle RGCC yes no 0 0 0 0 0 5 0 1 49.115 49.115 2 0.00011106 13656 TMT1-4 117.67 99.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14728 2655 14539 22608 29383 29383 1 NSGEEEIDSLQR Unmodified 1375.6216 0.6215515 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 2 0 1 41.382 41.382 3 4.417E-06 11491 TMT1-1 113.99 38.168 30.648 51.611 35.1 13.493 43.082 37.147 29 51 36 15 43 36 1 1 1 1 1 1 6507.9 14729 1095 14540 22609 29384 29384 1 NSGVPDDIFKLDDLSVLDLSHNQLTECPR Unmodified 3296.5983 0.59832022 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 1 5 0 1 75.776 75.776 4 2.327E-05 24153 TMT1-4 53.895 44.514 30.972 28.768 0 16.006 20.686 46.314 29 29 0 15 22 44 1 1 0 1 1 1 8718.6 14730 1666 14541 22610 29385 29385 1 NSHLINVLMWELEK Unmodified 1724.892 0.89197646 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 8 0 1 74.941 74.941 3 5.9141E-13 23426 TMT1-7 118.2 85.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14731 145 14542 22611 29386 29386 1 NSLCFPEDAEISK Unmodified 1508.6817 0.68170891 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 5 0 1 58.681 58.681 3 0.010511 17381 TMT1-4 55.011 41.331 99.173 176.2 134.51 83.815 173.27 142.16 94 174 138 87 174 138 1 1 1 1 1 1 15649 14732 251 14543 22612 29387 29387 1 NSLDCEIVSAK Unmodified 1234.5864 0.58635197 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 3.75 1.64 1 1 2 50.438 50.438 2;3 1.8203E-17 14098 TMT1-4 191.33 171.03 3015.4 4112.7 3857.4 3105.3 3871.7 4482.9 2851 4117 3935 3118 3985 4309 6 6 6 6 6 6 586600 14733 1555;1556 14544 22613;22614;22615;22616 29388;29389;29390;29391;29392;29393 29392 6 NSLDDSAKK Unmodified 976.48254 0.48253882 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 1 5 0 1 33.25 33.25 3 0.0068473 7360 TMT1-4 77.288 46.97 202.18 288.06 219.65 220.57 303.2 226.93 191 287 229 219 307 221 1 1 1 1 1 1 11246 14734 1808 14545 22617 29394 29394 1 NSLESYAFNMK Oxidation (M) 1318.5864 0.58635197 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 1 0 0 6.5 0.5 1 1 53.292 53.292 3 0.00013614 15416 TMT1-5 76.522 53.644 107.49 196.45 162.58 129.98 186.84 172.69 102 194 167 131 190 167 1 1 1 1 1 1 15272 14735 641 14546 22618;22619 29395;29396 29395 122 2 NSLESYAFNMK Unmodified 1302.5914 0.59143734 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 0 7 0 1 60.616 60.616 2 6.995E-09 17691 TMT1-6 164.65 125.5 176.17 330.12 227.63 157.65 194.88 388.86 167 325 236 160 206 370 1 1 1 1 1 1 69133 14736 641 14546 22620 29397 29397 1 NSLFEYQK Unmodified 1027.4975 0.4974606 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.4 2.24 1 2 2 52.279 52.279 2;3 0.00087897 14438 TMT1-6 147.19 114.83 2106.6 3352.9 2881.4 2240.3 3324 3770.5 1995 3330 2951 2264 3400 3626 5 5 5 5 5 5 1553800 14737 437 14547 22621;22622;22623;22624;22625 29398;29399;29400;29401;29402 29402 5 NSLFGSVETWPWQVLSK Unmodified 1976.9996 0.99961265 2732 Q9NRV9 HEBP1 Heme-binding protein 1 yes yes 0 0 0 0 0 9 0 1 88.461 88.461 3 4.5074E-14 26824 TMT1-8 112.82 81.303 92.877 54.894 33.209 44.478 86.921 59.348 87 58 36 44 87 58 1 1 1 1 1 1 9996.3 14738 2732 14548 22626 29403 29403 1 NSLGGDVLFVGK Unmodified 1204.6452 0.64518747 2611 Q9H0D6-2;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 0 7 0 1 63.258 63.258 3 0.0026705 18738 TMT1-6 70.963 35.003 77.39 85.929 84.984 80.909 77.916 59.605 73 87 87 80 80 58 1 1 1 1 1 1 7098 14739 2611 14549 22627 29404 29404 1 NSLISSLEEEVSILNR Unmodified 1801.9422 0.94215736 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 85.141 85.141 3 2.7101E-05 27752 TMT1-4 82.922 79.534 15.89 14.518 22.193 14.805 14.218 23.046 15 15 22 15 15 22 1 1 1 1 1 1 5337.5 14740 1805 14550 22628 29405 29405 1 NSLLSLSDT Unmodified 948.47639 0.47639081 2077 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 0 0 5 0 1 64.641 64.641 2 0.01118 19793 TMT1-4 87.308 69.746 39.363 35.198 27.019 45.985 26.38 53.613 37 36 29 44 29 51 1 1 1 1 1 1 14079 14741 2077 14551 22629 29406 29406 1 NSLTSKDPDIK Unmodified 1216.6299 0.62993134 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 1 6 0 1 41.797 41.797 3 0.0076682 10931 TMT1-5 70.622 34.205 187.37 476.76 384.64 296.42 513.13 408.56 179 466 395 301 517 397 1 1 1 1 1 1 32109 14742 1803 14552 22630 29407 29407 1 NSMLIVNLLAVTGGCFMGLCK Unmodified 2297.1404 0.14042171 642 P11169 SLC2A3 Solute carrier family 2, facilitated glucose transporter member 3 yes yes 0 0 0 0 0 9 0 1 99.023 99.023 3 0.00061102 30676 TMT1-8 53.625 41.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14743 642 14553 22631 29408 29408 1 NSMVALVENLASK Unmodified 1374.7177 0.71770049 20 B0I1T2;B0I1T2-4 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 8 0 1 76.631 76.631 3 0.00015765 24093 TMT1-7 68.944 25.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14744 20 14554 22632 29409 29409 1 NSNDPAVFK Unmodified 990.47706 0.47705951 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 5 0 1 42.937 42.937 2 5.3412E-12 11214 TMT1-4 150.08 91.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14745 740 14555 22633 29410 29410 1 NSNGQELEK Unmodified 1017.4727 0.47270242 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 3 0 1 75.904 75.904 2 0.03656 25424 TMT1-2 71.379 26.067 38.251 43.799 26.166 53.679 26.833 30.148 36 44 29 51 29 29 1 1 1 1 1 1 8204.3 14746 2100 14556 22634 29411 29411 1 NSNILEDLETLR Unmodified 1415.7256 0.72562264 1154 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 0 4 0 1 72.017 72.017 2 1.7031E-07 22985 TMT1-3 127.52 112.83 54.12 73.368 39.182 84.204 47.914 45.537 51 73 44 80 51 44 1 1 1 1 1 1 24460 14747 1154 14557 22635 29412 29412 1 NSNLVGAAHEELQQSR Unmodified 1751.8551 0.85507368 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 4 0 1 40.195 40.195 3 1.4337E-16 10405 TMT1-3 140.26 122.47 130.14 241.65 104.11 140.21 234.77 194.77 123 237 116 138 237 189 1 1 1 1 1 1 25581 14748 429 14558 22636 29413 29413 1 NSNPALNDNLEK Unmodified 1327.6368 0.63680763 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 2.6 1.02 1 1 2 1 44.13 44.13 3 8.2517E-11 11615 TMT1-3 158.11 130.44 2001.3 2848.3 2430 1746.5 2245.6 2725.6 1892 2842 2485 1769 2313 2617 6 6 6 6 6 6 395340 14749 59 14559 22637;22638;22639;22640;22641 29414;29415;29416;29417;29418;29419 29418 6 NSNVIPYDYNR Unmodified 1353.6313 0.63132832 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 4 0 1 45.278 45.278 2 2.0865E-06 12435 TMT1-3 134.38 99.661 61.153 134.12 68.059 57.725 85.762 75.371 58 131 73 58 87 73 1 1 1 1 1 1 19047 14750 570 14560 22642 29420 29420 1 NSQGEEVAQR Unmodified 1116.516 0.51596421 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 2 0 1 22.86 22.86 2 0.01054 4231 TMT1-1 83.499 65.059 15.936 14.647 14.256 22.783 21.965 0 15 15 15 22 22 0 1 1 1 1 1 0 1767.7 14751 816 14561 22643 29421 29421 1 NSQSFFSGLFGGSSK Unmodified 1548.7209 0.72087161 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 9 0 1 70.959 70.959 3 1.2289E-05 20107 TMT1-8 84.375 53.937 380.35 652.16 443.35 323.34 290.53 580.14 360 644 461 325 311 552 2 2 2 2 2 2 37027 14752 1304 14562 22644 29422;29423 29423 2 NSRPEANEALER Unmodified 1384.6695 0.66950474 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 1 2 0 1 26.554 26.554 3 6.0374E-19 5634 TMT1-1 186.16 140.33 115.83 106.52 98.412 111.73 81.959 113.86 109 109 102 109 87 109 2 2 2 2 2 2 17575 14753 3048 14563 22645 29424;29425 29424 2 NSSCFVEWIPNNVK Unmodified 1692.793 0.7929907 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 0 0 0 6.4 2.8 1 2 1 1 67.084 67.084 3 8.3294E-06 20021 TMT1-7 99.991 62.627 1750 2446.8 2260.2 1707.3 2252.3 2735 1655 2446 2303 1724 2318 2626 8 8 8 8 8 8 490480 14754 2650 14564 22646;22647;22648;22649;22650 29426;29427;29428;29429;29430;29431;29432;29433;29434 29431 9 NSSEQELR Unmodified 961.44649 0.44648767 2984 Q9Y371;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 0 2 0 1 24.63 24.63 2 0.024514 4932 TMT1-1 85.731 25.141 7.3122 22.678 14.201 14.188 14.247 23.045 7 22 15 14 15 22 1 1 1 1 1 1 1301.8 14755 2984 14565 22651 29435 29435 1 NSSNTADITI Unmodified 1034.488 0.48801813 2756 Q9NV96-3;Q9NV96-2;Q9NV96 TMEM30A Cell cycle control protein 50A yes no 0 0 0 0 0 2 0 1 51.785 51.785 2 0.014036 15632 TMT1-1 78.934 52.858 23.102 52.027 40.609 84.429 31.429 68.393 22 51 44 80 36 65 1 1 1 1 1 1 8580.7 14756 2756 14566 22652 29436 29436 1 NSSVNEGSTYHK Unmodified 1321.5899 0.58985744 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 4 0 1 28.927 28.927 3 0.00012544 5967 TMT1-3 96.866 83.203 23.272 52.501 11.605 30.485 27.643 37.587 22 51 15 29 29 36 1 1 1 1 1 1 1996.1 14757 118 14567 22653 29437 29437 1 NSSYFVEWIPNNVK Unmodified 1695.8257 0.82567103 537;1493;1713 P07437;P68371;P04350;Q13509;Q13509-2 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 0 0 0 0 0 8 0.816 1 1 1 70.429 70.429 3 6.7088E-15 21656 TMT1-7 137.09 110.55 1980 2495.8 2156.1 2080 2173.9 2629.6 1869 2505 2226 2058 2256 2525 5 5 5 5 5 5 467600 14758 537;1493;1713 14568 22654;22655;22656 29438;29439;29440;29441;29442;29443 29441 6 NSTFSEIFK Unmodified 1071.5237 0.52367535 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 7 0 1 60.111 60.111 2 0.0001366 17481 TMT1-6 148.96 72.131 207.74 236.42 231.67 165.44 232.44 289.72 196 239 235 168 239 278 1 1 1 1 1 1 43524 14759 937 14569 22657 29444 29444 1 NSTFSEIFKK Unmodified 1199.6186 0.61863837 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 8.5 0.5 1 1 54.985 54.985 3 0.00027387 13676 TMT1-8 117.79 77.069 1350.5 2000.4 1613.5 1178.9 1592.8 1965 1277 1991 1657 1194 1639 1886 2 2 2 2 2 2 114230 14760 937 14570 22658;22659 29445;29446 29446 2 NSTIPTK Unmodified 759.41267 0.41266834 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 6 0 1 36.062 36.062 2 0.0080008 8590 TMT1-5 121.09 73.349 148.69 373.49 480.95 391 467.49 332.04 143 368 482 392 475 324 1 1 1 1 1 1 55085 14761 618 14571 22660 29447 29447 1 NSTIVFPLPIDMLQGIIGAK Oxidation (M) 2142.1759 0.17586246 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 0 9 0 1 90.032 90.032 3 1.4838E-12 27467 TMT1-8 89.668 62.639 23.049 51.88 49.623 52.295 26.09 53.622 22 51 51 51 29 51 1 1 1 1 1 1 11666 14762 906 14572 22661 29448 29448 170 1 NSTIVFPLPIDMLQGIIGAK Unmodified 2126.1809 0.18094784 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 0 9 0 2 100.56 100.56 3;4 4.7767E-32 31349 TMT1-8 143.57 113.03 441.26 523.33 775.36 663.74 549.78 921.33 418 532 775 659 585 879 6 6 6 6 6 6 237740 14763 906 14572 22662;22663 29449;29450;29451;29452;29453;29454 29451 6 NSTPSEPGSGR Unmodified 1087.4894 0.48941511 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 0 2 0 1 23.114 23.114 2 0.00054385 4325 TMT1-1 76.332 33.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14764 1257 14573 22664 29455 29455 1 NSTTLPR Unmodified 787.41882 0.41881635 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 4 0 1 28.26 28.26 2 0.038681 5675 TMT1-3 86.794 51.986 54.241 65.07 25.879 29.654 26.618 68.53 51 65 29 29 29 65 1 1 1 1 1 1 3541.4 14765 1225 14574 22665 29456 29456 1 NSTWSGESK Unmodified 994.43559 0.43558863 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 5.5 0.5 1 1 36.166 36.166 2 1.292E-08 8510 TMT1-4 167.93 96.554 191.63 295.78 182.74 238.34 231.02 264.17 181 293 196 232 240 254 2 2 2 2 2 2 24221 14766 786 14575 22666;22667 29457;29458 29457 2 NSVDELNNNVEAVSQTSSSSFQYMYLLK Unmodified 3166.4765 0.47647375 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.86 2.1 1 3 2 1 80.794 80.794 4;5 1.3179E-16 25559 TMT1-7 95.366 76.964 591.67 702.46 591.99 611.14 672.7 1006.3 558 707 614 603 703 962 15 15 15 15 15 15 212170 14767 438 14576 22668;22669;22670;22671;22672;22673;22674 29459;29460;29461;29462;29463;29464;29465;29466;29467;29468;29469;29470;29471;29472;29473 29473 15 NSVEVALNK Unmodified 972.52401 0.52400971 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5.5 0.5 1 1 46.625 46.625 2;3 1.0162E-05 12754 TMT1-5 157.99 126.57 261.21 330.64 362.51 204.29 251.38 356.33 247 333 363 211 261 341 2 2 2 2 2 2 29549 14768 1297 14577 22675;22676 29474;29475 29475 2 NSVPCQDPITGENLASCLQAQAEDVAAAVEAAR Unmodified 3454.6093 0.60929561 2157 Q8IZ83;Q8IZ83-3;Q8IZ83-2 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 0 5 0 1 88.941 88.941 4 0.00021187 29182 TMT1-4 42.582 36.981 7.385 22.407 30.118 21.561 36.686 29.867 7 22 30 22 37 29 1 2 2 2 2 2 3458.7 14769 2157 14578 22677 29476;29477 29476 2 NSVSQISVLSGGK Unmodified 1274.683 0.68302954 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 6 2.92 1 1 2 52.56 52.56 2;3 2.235E-36 14548 TMT1-7 205.31 158.9 544.63 708.32 558.18 517.5 586.53 655.91 514 709 579 514 605 631 4 4 4 4 4 4 265370 14770 128 14579 22678;22679;22680;22681 29478;29479;29480;29481 29480 4 NSVVEASEAAYK Unmodified 1266.6092 0.6091959 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 4 0 1 46.396 46.396 3 4.9532E-08 12835 TMT1-3 126.1 111.42 818.45 839.65 953.68 709.8 964.38 1122.7 772 856 961 718 990 1079 2 2 2 2 2 2 166110 14771 1588 14580 22682 29482;29483 29482 2 NSWGEPWGER Unmodified 1216.5261 0.52613497 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 0 5 0 1 50.828 50.828 2 0.0029881 14329 TMT1-4 97.597 52.616 107.73 206.83 113.47 149.55 115.53 182.19 102 203 123 145 123 174 1 1 1 1 1 1 14449 14772 2844 14581 22683 29484 29484 1 NSWGHNFGEEGYIR Unmodified 1664.7332 0.73316763 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 0 5 0 1 45.964 45.964 3 2.3457E-07 12402 TMT1-4 106.6 94.243 130.16 166.14 165.68 98.647 157.64 211.9 123 167 167 102 162 203 1 1 1 1 1 1 16432 14773 889 14582 22684 29485 29485 1 NSYLEVLLK Unmodified 1077.607 0.60701105 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 7.5 0.5 1 1 69.76 69.76 2;3 8.8544E-14 21375 TMT1-6 187.82 155.6 398.76 543.45 507.32 318.94 438.04 433.09 377 544 514 327 447 418 3 3 3 3 3 3 56034 14774 1827 14583 22685;22686 29486;29487;29488 29487 3 NSYVAGQYDDAASYQR Unmodified 1806.7809 0.78090569 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 3 0 1 43.806 43.806 3 1.0408E-25 12800 TMT1-2 179.85 169.06 46.177 95.344 93.218 56.943 47.592 91.384 44 94 94 58 51 87 1 1 1 1 1 1 61595 14775 655 14584 22687 29489 29489 1 NTAELQPESGKR Unmodified 1328.6684 0.66844211 142 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 1 4 0 1 31.761 31.761 3 0.00011984 7047 TMT1-3 74.537 46.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14776 142 14585 22688 29490 29490 1 NTAEWLLSHTK Unmodified 1298.6619 0.66190017 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 7.5 0.5 1 1 55.014 55.014 3 3.3569E-12 15650 TMT1-7 168.76 120.19 1332.5 1729 1626.2 1481.6 1962.8 1842.5 1259 1735 1666 1478 2002 1781 4 4 4 4 4 4 240610 14777 394 14586 22689;22690 29491;29492;29493;29494 29494 4 NTAHQLK Unmodified 810.4348 0.43480077 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 0 6 0 1 25.003 25.003 3 0.031627 4446 TMT1-5 58.917 28.663 77.746 48.065 57.196 51.267 56.758 45.284 73 51 58 51 58 44 1 1 1 1 1 1 1677.1 14778 614 14587 22691 29495 29495 1 NTCQLYIQTDHLFFK Unmodified 1926.9298 0.92981853 101 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 0 8 0 1 65.156 65.156 3 5.4083E-08 19563 TMT1-7 112.34 87.284 207.18 282.34 286.96 222.58 332.04 328.45 196 283 291 225 338 317 2 2 2 2 2 2 28486 14779 101 14588 22692 29496;29497 29496 2 NTDEMVELR Unmodified 1105.5074 0.50737336 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 2.5 0.5 1 1 44.737 44.737 2 0.000255 12804 TMT1-1 143.39 84.579 107.7 183.02 137.73 171.46 152.2 212.05 102 181 145 167 160 203 2 2 2 2 2 2 27466 14780 1409;1410 14589 22693;22694 29498;29499;29500 29498 3 NTDNIIYPEEYSSCSR Unmodified 1946.8316 0.83162063 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 2.5 0.5 1 1 50.882 50.882 3 9.2904E-24 15509 TMT1-2 174.21 161.72 176.72 248.53 205.08 166.6 197.14 250.21 167 248 211 167 204 240 4 4 4 4 4 4 98391 14781 1684 14590 22695;22696 29501;29502;29503;29504 29502 4 NTDQASMPDNTAAQK Oxidation (M) 1606.6893 0.68931349 1019;1029 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 1 0 0 3 0.816 1 1 1 30.986 30.986 3 2.148E-05 6672 TMT1-3 96.247 84.556 155.19 150.33 119.43 110.88 118.87 167.17 146 153 124 110 124 160 3 3 3 3 3 3 28010 14782 1019;1029 14591 22697;22698;22699 29505;29506;29507 29507 191 3 NTDQASMPDNTAAQK Unmodified 1590.6944 0.69439886 1019;1029 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 0 0 0 3 0.816 1 1 1 37.224 37.224 3 2.9976E-28 9106 TMT1-3 189.11 171.6 585.69 787.47 622.51 516.72 656.95 829.79 553 787 643 518 678 796 4 4 4 4 4 4 169950 14783 1019;1029 14591 22700;22701;22702 29508;29509;29510;29511 29510 4 NTEDLTEEWLR Unmodified 1404.6521 0.65212334 1365 P60983 GMFB Glia maturation factor beta yes yes 0 0 0 0 0 3 0 1 62.047 62.047 3 2.9801E-05 20018 TMT1-2 110.64 84.99 30.739 51.865 19.541 22.354 28.017 37.577 29 51 22 22 29 36 1 1 1 1 1 1 4761.1 14784 1365 14592 22703 29512 29512 1 NTEGSFQCVCDQGYR Unmodified 1819.7254 0.72538142 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 3 0 1 43.082 43.082 3 0.0011357 12572 TMT1-2 66.673 63.664 46.671 57.864 41.911 44.664 49.476 52.954 44 58 44 44 51 51 1 1 1 1 1 1 10701 14785 1797 14593 22704 29513 29513 1 NTFAEVTGLSPGVTYYFK Unmodified 1992.9833 0.98329389 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 8 0 1 76.434 76.434 3 2.0207E-14 24002 TMT1-7 124.26 90.465 108.39 99.675 92.338 63.821 91.492 113.58 102 102 94 65 94 109 2 2 2 2 2 2 19968 14786 442 14594 22705 29514;29515 29514 2 NTFLGEAEIQMDSWK Unmodified 1767.8138 0.81378572 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 6 0 1 74.67 74.67 3 0.043252 23872 TMT1-5 38.777 19.945 115.39 151.7 134.43 116.82 103.95 136.68 109 152 138 116 109 131 1 1 1 1 1 1 13421 14787 2378 14595 22706 29516 29516 1 NTFVGTPFWMAPEVIK Unmodified 1835.928 0.92802762 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 9 0 1 81.18 81.18 3 0.00027216 24032 TMT1-8 63.918 30.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14788 3054 14596 22707 29517 29517 1 NTGESASQLLDAETAER Unmodified 1790.8282 0.82824981 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 2 0 1 50.331 50.331 3 1.7729E-10 15036 TMT1-1 114.96 106.97 46.321 104.38 61.257 57.855 100.4 105.87 44 102 65 58 102 102 1 1 1 1 1 1 15525 14789 2306 14597 22708 29518 29518 1 NTGIICTIGPASR Unmodified 1358.6976 0.69763375 706;707 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5.33 3.09 1 1 1 48.59 48.59 2 7.7435E-29 12882 TMT1-6 204.01 160.74 591.96 916.24 723.07 465.43 740.34 876.45 560 910 741 478 757 842 4 4 4 4 4 4 303520 14790 706;707 14598 22709;22710;22711 29519;29520;29521;29522 29520 4 NTGLSHELCR Unmodified 1185.5561 0.55605489 2804 Q9NZQ3-3;Q9NZQ3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-2 NCKIPSD NCK-interacting protein with SH3 domain yes no 0 0 0 0 0 4 0 1 31.026 31.026 3 0.0023819 6762 TMT1-3 80.979 61.193 54.15 64.816 41.449 44.839 41.625 68.102 51 65 44 44 44 65 1 1 1 1 1 1 3701.3 14791 2804 14599 22712 29523 29523 1 NTHCSSLPHYQK Unmodified 1470.6674 0.66739625 1109 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 0 7.5 1.5 1 1 30.37 30.37 4 0.00023725 6316 TMT1-5 89.43 75.691 123.23 125.11 101.94 79.411 103.84 189.98 116 127 105 80 109 181 2 2 2 2 2 2 8631.4 14792 1109 14600 22713;22714 29524;29525 29524 2 NTHTLLLAGVFR Unmodified 1340.7565 0.75646926 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 9 0 1 55.307 55.307 3 0.0025558 13842 TMT1-8 64.65 11.861 84.635 115.97 104.22 142.12 132.9 143.32 80 116 109 138 138 138 1 1 1 1 1 1 14938 14793 3047 14601 22715 29526 29526 1 NTIQWLENELNR Unmodified 1528.7634 0.76340513 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 6 0 1 73.027 73.027 3 0.00029305 23210 TMT1-5 89.629 55.739 38.141 34.857 52.325 12.879 21.123 37.773 36 36 51 15 22 36 1 1 1 1 1 1 8692.4 14794 998 14602 22716 29527 29527 1 NTIVTSYNR Unmodified 1066.5407 0.5407224 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 5 0 1 36.727 36.727 2 5.2652E-06 8742 TMT1-4 162.49 130.37 84.383 146.57 120.72 70.604 105.82 144.09 80 145 123 73 109 138 1 1 1 1 1 1 19754 14795 2492 14603 22717 29528 29528 1 NTIYEIQDNTGSMDVVGSGK Unmodified 2126.979 0.97901315 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 4 0 1 60.894 60.894 4 4.8609E-07 18556 TMT1-3 83.776 63.685 37.679 96.171 78.049 57.261 78.747 67.043 36 94 80 58 80 65 1 1 1 1 1 1 8215.9 14796 1079 14604 22718 29529 29529 1 NTLCAPEVISLINTR Unmodified 1699.8927 0.89270474 2384 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 0 0 7 0 1 69.398 69.398 3 0.0347 21239 TMT1-6 41.088 21.765 30.495 34.997 74.817 42.991 34.104 45.931 29 36 73 44 36 44 1 1 1 1 1 1 5529.6 14797 2384 14605 22719 29530 29530 1 NTLEWCLPVIDAK Unmodified 1557.7861 0.78611441 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 0 7 0 1 74.02 74.02 2 5.4233E-16 22996 TMT1-6 136.38 102.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14798 1154 14606 22720 29531 29531 1 NTLFNLSNFLDK Unmodified 1424.73 0.72997974 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4;O60641-3;O60641-4;O60641 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 0 0 0 0 0 9 0 2 80.07 80.07 2;3 0.00014698 23643 TMT1-8 92.039 64.735 46.451 64.808 72.944 43.093 34.649 29.925 44 65 73 44 36 29 1 1 1 1 1 1 11391 14799 1710 14607 22721;22722 29532;29533 29532 2 NTLIIYLDK Unmodified 1091.6227 0.62266112 409;33 P01024;CON__Q2UVX4 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 no no 0 0 0 0 0 7 0 1 66.753 66.753 2 0.038971 20106 TMT1-6 70.412 28.063 53.525 103.01 114.13 110.79 82.003 113.85 51 102 116 109 87 109 1 1 1 1 1 1 8472.6 + 14800 409;33 14608 22723 29534 29534 1 NTLIQFEDFGNHNAFR Unmodified 1921.9071 0.90710925 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 7 0 1 61.339 61.339 3 6.0745E-12 18045 TMT1-6 125.75 106.2 122.77 159.44 150.88 100.69 96.063 144.37 116 160 153 102 101 138 2 2 2 2 2 2 34448 14801 859 14609 22724 29535;29536 29536 2 NTLLIAGLQAR Unmodified 1168.6928 0.69280637 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 9 0 1 58.383 58.383 2 0.0001063 15135 TMT1-8 106.4 55.054 176.77 215.23 223.69 133.76 198.96 210.72 167 217 225 138 203 203 2 2 2 2 2 2 24243 14802 1063 14610 22725 29537;29538 29538 2 NTLPTKETIEQEK Unmodified 1529.7937 0.7937022 1481 P63313;CON__P21752 TMSB10 Thymosin beta-10 yes no 0 0 0 0 1 5 0 1 46.312 46.312 3 0.00010465 12564 TMT1-4 97.69 62.05 84.559 170.81 70.51 120.67 101.65 198.57 80 167 80 116 109 189 1 1 1 1 1 1 9102.2 + 14803 1481 14611 22726 29539 29539 1 NTLQLHR Unmodified 880.4879 0.48789897 1389 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 0 0 6 0 1 28.966 28.966 3 0.026323 5807 TMT1-5 62.659 25.958 30.801 20.737 35.54 45.166 42.93 29.689 29 22 36 44 44 29 1 1 1 1 1 1 2677 14804 1389 14612 22727 29540 29540 1 NTLTTGVEEIR Unmodified 1231.6408 0.64083038 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 3.5 0.5 1 1 46.287 46.287 2 0.0041048 13820 TMT1-2 88.83 50.537 77.309 101.89 85.073 57.424 47.826 83.915 73 102 87 58 51 80 1 1 1 1 1 1 7235.2 14805 2064 14613 22728;22729 29541;29542 29541 2 NTMAACDLR Unmodified 1050.4586 0.45864903 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 3.5 0.5 1 1 35.781 35.781 2 0.0012867 8611 TMT1-3 121.64 108.06 508.97 592.22 518.4 477.9 435.74 652.75 480 597 534 473 459 624 2 2 2 2 2 2 80947 14806 2650 14614 22730;22731 29543;29544 29544 2 NTMSLLAANNLLAGLR Unmodified 1670.9138 0.91377454 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 9 0 1 77.295 77.295 3 3.1898E-08 22503 TMT1-8 103.77 76.738 38.105 43.392 51.139 28 34.537 53.38 36 44 51 29 36 51 1 1 1 1 1 1 13532 14807 2843 14615 22732 29545 29545 1 NTNDANSCQIIIPQNQVNR Unmodified 2198.0498 0.049827099 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 5 0 1 46.295 46.295 3 1.9472E-35 12539 TMT1-4 157.11 143.21 23.339 28.943 20.28 37.493 34.357 45.924 22 29 22 36 36 44 1 1 1 1 1 1 23041 14808 1217;972 14616 22733 29546 29546 1 NTNPNFVR Unmodified 960.47773 0.47772821 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 5.67 2.56 1 2 1 1 1 33.316 33.316 2;3 3.7674E-05 7578 TMT1-5 162.25 105.53 687.11 1038.4 857.96 881.03 996.47 1055.7 650 1033 890 870 1026 1017 6 6 6 6 6 6 272770 14809 1019;1020 14617 22734;22735;22736;22737;22738;22739 29547;29548;29549;29550;29551;29552;29553 29551 7 NTPAFFAER Unmodified 1051.5087 0.50869399 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 6 0 1 47.973 47.973 2 0.012471 13320 TMT1-5 85.533 47.23 146.19 212.37 136.09 164.33 129.49 212.7 138 211 145 160 138 203 1 1 1 1 1 1 27770 14810 1234 14618 22740 29554 29554 1 NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGK Unmodified 3824.9236 0.92361753 1630 Q09028-3;Q09028;Q09028-2 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 1 9 0 1 93.298 93.298 5 1.8679E-16 28669 TMT1-8 80.174 66.225 23.337 28.938 20.616 29.938 28.181 22.648 22 29 22 29 29 22 1 1 1 1 1 1 2679 14811 1630 14619 22741 29555 29555 1 NTSVVDSEPVR Unmodified 1201.5939 0.59388018 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 2.5 0.5 1 1 36.139 36.139 2 1.4997E-42 9515 TMT1-1 228.13 157.32 200.43 246.12 189.55 151.5 235.58 217.14 189 247 196 153 239 210 2 2 2 2 2 2 61841 14812 1635 14620 22742;22743 29556;29557 29556 2 NTTAAEEAR Unmodified 961.44649 0.44648767 65 O00410;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 0 2 0 1 22.069 22.069 2 0.0016685 3968 TMT1-1 79.906 39.803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14813 65 14621 22744 29558 29558 1 NTTGVTEEALK Unmodified 1161.5877 0.58773217 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 42.91 42.91 3 0.0034336 11555 TMT1-3 73.466 50.147 92.311 108.37 82.923 95.275 134.25 166.73 87 109 87 94 138 160 1 1 1 1 1 1 58711 14814 1737 14622 22745 29559 29559 1 NTTIPTK Unmodified 773.42832 0.42831841 641;1058 P11142;P11142-2;P54652;P38646 HSPA8;HSPA2;HSPA9 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Stress-70 protein, mitochondrial no no 0 0 0 0 0 6.5 0.5 1 1 37.948 37.948 2 0.010052 8788 TMT1-6 109.71 32.657 1254.8 1909.8 1370.9 1074 1430.7 1433.5 1186 1896 1423 1082 1462 1383 3 3 3 3 3 3 275870 14815 641;1058 14623 22746;22747 29560;29561;29562 29562 3 NTTIPTKK Unmodified 901.52328 0.52328142 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 1 8 0 1 35.186 35.186 3 0.018273 7817 TMT1-7 72.243 41.17 153.6 171.65 187.37 135.88 201.21 203.19 145 174 189 138 205 196 1 1 1 1 1 1 53766 14816 1058 14624 22748 29563 29563 1 NTVAAIEEALDVDR Unmodified 1514.7577 0.75765105 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 2 0 1 72.626 72.626 3 6.4847E-05 23497 TMT1-1 88.561 61.59 15.851 37.925 22.406 16.395 0 23.452 15 37 22 15 0 22 1 2 1 1 0 2 3944.9 14817 156 14625 22749 29564;29565 29564 2 NTVANSPQTLLAGMNK Unmodified 1657.8458 0.84575455 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 8 0 1 59.705 59.705 3 0.00083898 17426 TMT1-7 66.289 36.482 68.724 93.842 92.151 80.379 83.401 113.81 65 94 94 80 87 109 1 1 1 1 1 1 7441 14818 1383 14626 22750 29566 29566 1 NTVEITELPVR Unmodified 1269.6929 0.69286595 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 4 0 1 54.04 54.04 2 0.0015132 15889 TMT1-3 97.779 69.036 68.813 94.09 76.941 81.414 76.574 98.019 65 94 80 80 80 94 1 1 1 1 1 1 10577 14819 1574 14627 22751 29567 29567 1 NTVLCNVVEQFLQADLAR Unmodified 2089.0626 0.062623617 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 0 8 0 1 93.349 93.349 3 2.4675E-10 30281 TMT1-7 109.89 93.753 23.537 5.7474 6.7931 7.1248 6.4519 15.806 22 7 7 7 7 15 1 1 1 1 1 1 5198.2 14820 1769 14628 22752 29568 29568 1 NTVQGFK Unmodified 792.413 0.41300269 1009 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 0 7 0 1 40.249 40.249 2 0.0080535 9669 TMT1-6 120.46 16.248 122.51 214.85 146.92 90.579 181.12 209.1 116 212 152 94 184 201 1 1 1 1 1 1 13741 14821 1009 14629 22753 29569 29569 1 NTVSSAR Unmodified 733.37187 0.37186616 150 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 0 2.5 0.5 1 1 18.439 18.439 2 0.0079527 3199 TMT1-2 121.67 46.428 20.253 10.104 14.006 9.7343 19.189 6.9144 19 11 14 10 19 7 2 2 2 2 2 2 1792.2 14822 150 14630 22754;22755 29570;29571 29571 2 NTVTLLEEALDQDR Unmodified 1615.8053 0.80532952 2911 Q9ULH1;Q9ULH1-2 ASAP1 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 3 0 1 74.818 74.818 3 1.2082E-06 24942 TMT1-2 103.88 65.922 31.782 27.963 44.835 20.989 20.457 46.32 30 29 44 22 22 44 2 2 2 2 2 2 6980.5 14823 2911 14631 22756 29572;29573 29572 2 NTVVATGGYGR Unmodified 1093.5516 0.55162144 970 P31040;P31040-2 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 5 0 1 35.286 35.286 2 0.0064147 8171 TMT1-4 84.188 52.81 69.106 79.795 39.819 59.552 78.092 83.052 65 80 44 58 80 80 1 1 1 1 1 1 9960.6 14824 970 14632 22757 29574 29574 1 NTVVLFVPQQEAWVVER Unmodified 2013.0684 0.068360922 2890 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 0 7 0 1 73.804 73.804 3 2.5691E-10 22910 TMT1-6 86.479 65.771 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14825 2890 14633 22758 29575 29575 1 NTVVPTK Unmodified 757.4334 0.43340378 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7 0 1 38.612 38.612 2 0.019968 9020 TMT1-6 97.635 42.265 230.54 332.95 284.29 211.79 274.72 367.39 218 332 291 214 284 352 1 1 1 1 1 1 24429 14826 640 14634 22759 29576 29576 1 NTVVPTKK Unmodified 885.52837 0.5283668 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 8 0 1 35.381 35.381 3 0.027236 7874 TMT1-7 65.347 31.269 674.65 1190.7 839.24 781.96 919.1 1065.4 639 1175 877 777 948 1024 1 1 1 1 1 1 179640 14827 640 14635 22760 29577 29577 1 NTYSSLEGK Unmodified 997.47164 0.47163978 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 5.33 1.25 1 1 1 40.997 40.997 2 4.2983E-06 10355 TMT1-4 163.38 145.95 822.81 922.66 871.7 616.11 858.71 1066 776 933 886 626 883 1023 5 5 5 5 5 5 121310 14828 1684 14636 22761;22762;22763 29578;29579;29580;29581;29582 29580 5 NTYYASIAK Unmodified 1029.5131 0.51311067 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 46.516 46.516 2 0.0012892 12180 TMT1-6 121.6 100.14 54.138 57.227 49.903 35.297 57.236 52.733 51 58 51 36 58 51 1 1 1 1 1 1 7228.5 14829 653 14637 22764 29583 29583 1 NVAADIAVQLCESVANKLEGK Unmodified 2228.1471 0.14708153 562 P08240-2;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 0 1 8 0 1 83.984 83.984 4 0.00044209 26907 TMT1-7 54.658 39.066 54.151 64.821 41.119 52.24 55.943 67.694 51 65 44 51 58 65 1 1 1 1 1 1 3510.2 14830 562 14638 22765 29584 29584 1 NVADYYPEYK Unmodified 1260.5663 0.56626845 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 5 0 1 52.519 52.519 3 0.0052686 14968 TMT1-4 72.2 48.965 130.02 197.06 162.36 131.44 109.84 158.9 123 196 167 131 116 152 1 1 1 1 1 1 16104 14831 1391 14639 22766 29585 29585 1 NVAGVPGDSGR Unmodified 1027.5047 0.50467125 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 4 0 1 33.47 33.47 2 0.00014849 7729 TMT1-3 86.882 74.255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14832 1275 14640 22767 29586 29586 1 NVALLAYNR Unmodified 1032.5716 0.5716286 2202 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 0 0 8 0 1 50.349 50.349 2 0.0012491 13734 TMT1-7 122.18 83.384 107.99 129.86 134.37 148.45 108 189.86 102 131 138 145 116 181 1 1 1 1 1 1 10306 14833 2202 14641 22768 29587 29587 1 NVALLSQLYHSPAR Unmodified 1567.8471 0.84707518 1869 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 0 9 0 1 55.372 55.372 3 0.0029562 13927 TMT1-8 56.774 20.814 61.261 103.13 76.075 89.552 53.422 91.218 58 102 80 87 58 87 1 1 1 1 1 1 16577 14834 1869 14642 22769 29588 29588 1 NVAPGIFK Unmodified 844.48069 0.48068833 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 8 0 1 52.5 52.5 2 0.019774 14612 TMT1-7 89.142 26.3 61.581 72.714 48.194 51.956 48.627 67.902 58 73 51 51 51 65 1 1 1 1 1 1 5181.4 14835 2940 14643 22770 29589 29589 1 NVAQYGLDPATR Unmodified 1303.6521 0.65206377 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 4 0 1 46.085 46.085 2 0.0036947 12746 TMT1-3 80.014 63.812 38.003 34.473 75.893 18.692 44.147 29.654 36 36 73 22 44 29 1 1 1 1 1 1 5349.1 14836 2256 14644 22771 29590 29590 1 NVCSEAAQK Unmodified 1005.4549 0.45494386 2364 Q96AT9-4;Q96AT9-2;Q96AT9;Q96AT9-5;Q96AT9-3 RPE Ribulose-phosphate 3-epimerase yes no 0 0 0 0 0 4 0 1 32.824 32.824 2 0.012 7469 TMT1-3 86.18 41.099 30.603 51.486 42.761 35.999 42.545 53.152 29 51 44 36 44 51 1 1 1 1 1 1 4091.7 14837 2364 14645 22772 29591 29591 1 NVDGVNYASITR Unmodified 1307.647 0.64697839 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 0 5 0 1 47.011 47.011 2 0.0026515 12825 TMT1-4 64.266 35.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14838 2844 14646 22773 29592 29592 1 NVDHEVNLLVEEIHR Unmodified 1814.9275 0.92751034 2818 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 0 3 0 1 57.528 57.528 4 0.0030841 18170 TMT1-2 59.673 51.963 31.862 20.63 37.688 21.273 28.03 38.642 30 22 37 22 29 37 1 1 1 1 1 1 5043.4 14839 2818 14647 22774 29593 29593 1 NVDILKDPETVK Unmodified 1369.7453 0.74529545 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 1 6 0 1 52.729 52.729 3 0.00069298 15242 TMT1-5 87.498 75.138 226.32 314 289.03 228.51 300.73 318.68 214 314 295 230 308 307 1 1 1 1 1 1 23899 14840 121 14648 22775 29594 29594 1 NVDLISETTVELYSLAER Unmodified 2051.0423 0.04226533 1585 Q04759;Q04759-2 PRKCQ Protein kinase C theta type yes no 0 0 0 0 0 4.5 0.5 1 1 86.852 86.852 3 3.1383E-08 28391 TMT1-4 100.92 80.828 30.604 43.932 49.058 74.848 49.13 22.658 29 44 51 72 51 22 2 2 2 2 2 1 5717.8 14841 1585 14649 22776;22777 29595;29596;29597 29596 3 NVDLLSDMVQEHDEPILK Oxidation (M) 2110.0252 0.025235058 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 1 0 0 4 0 1 60.58 60.58 3 9.7351E-09 18413 TMT1-3 104.03 84.207 38.33 35.382 20.165 29.689 42.835 53.144 36 36 22 29 44 51 1 1 1 1 1 1 7016.7 14842 1315;1316 14650 22778 29598 29598 211 1 NVDLLSDMVQEHDEPILK Unmodified 2094.0303 0.030320436 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 0 4 0 1 69.919 69.919 3 4.0882E-25 22159 TMT1-3 149.74 127.92 277.49 270.53 200.81 197.03 277.94 262.83 261 275 210 196 283 254 2 2 2 2 2 2 82611 14843 1315;1316 14650 22779 29599;29600 29600 2 NVDLSTFYQNR Unmodified 1355.647 0.64697839 326 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 0 6 0 1 57.362 57.362 2 0.00014961 17065 TMT1-5 110.84 73.108 46.596 73.845 40.949 44.751 47.896 98.837 44 73 44 44 51 94 1 1 1 1 1 1 10531 14844 326 14651 22780 29601 29601 1 NVDMLSELVQEYDEPILK Unmodified 2134.0504 0.050387176 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 4.5 0.5 2 2 88.455 88.455 3;4 2.3457E-14 29020 TMT1-4 123.41 115.12 110.4 146.63 75.778 121.15 117.94 198.11 104 146 80 117 124 189 6 6 3 6 5 6 25657 14845 2488 14652 22781;22782;22783;22784 29602;29603;29604;29605;29606;29607 29605 6 NVDVYDKR Unmodified 1007.5036 0.50360861 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 1 5 0 1 36.257 36.257 3 0.02453 8575 TMT1-4 66.621 33.781 208.47 190.97 146.85 114.71 177.05 203.88 196 195 152 116 181 196 1 1 1 1 1 1 13833 14846 1501 14653 22785 29608 29608 1 NVEAMNFADIER Unmodified 1407.6453 0.64526383 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 4 0 1 58.178 58.178 2 0.014054 17475 TMT1-3 70.728 24.727 53.857 87.746 71.208 50.333 62.004 106.96 51 87 73 51 65 102 1 1 1 1 1 1 15972 14847 1046 14654 22786 29609 29609 1 NVEDFTGPR Unmodified 1033.4829 0.48287317 1367 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 0 4 0 1 42.646 42.646 2 0.00039367 11334 TMT1-3 139.02 99.872 99.132 168.53 148 131.41 156.97 126.64 94 167 152 131 160 123 1 1 1 1 1 1 36451 14848 1367 14655 22787 29610 29610 1 NVEELVIVLK Unmodified 1154.6911 0.69107503 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 6 0 1 73.82 73.82 2 7.6086E-05 23514 TMT1-5 141.95 112.87 30.514 51.237 57.99 34.529 72.463 67.222 29 51 58 36 73 65 1 1 1 1 1 1 7334 14849 1286 14656 22788 29611 29611 1 NVEELVIVLKK Unmodified 1282.786 0.78603805 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 8 0 1 67.974 67.974 3 0.0024198 20697 TMT1-7 81.565 63.979 177.58 163.5 132.36 140.23 144.38 237.86 167 167 138 138 152 227 1 1 1 1 1 1 10085 14850 1286 14657 22789 29612 29612 1 NVEGIEK Unmodified 787.40758 0.40758296 3072 yes yes 0 0 0 0 0 7 0 1 53.109 53.109 2 0.038323 14719 TMT1-6 86.953 7.3565 231.77 374.5 403.19 279.69 355.67 386.4 220 373 406 284 365 372 1 1 1 1 1 1 28851 + 14851 3072 14658 22790 29613 29613 1 NVELQCLDADDAK Unmodified 1489.6719 0.67187251 440 P02730-2;P02730 SLC4A1 Band 3 anion transport protein yes no 0 0 0 0 0 2.5 0.5 1 1 54.624 54.624 3 0.0013277 16717 TMT1-1 73.927 54.349 53.866 96.405 62.354 67.393 54.697 83.719 51 95 66 66 58 80 2 2 2 2 2 2 15409 14852 440 14659 22791;22792 29614;29615 29614 2 NVEPFTSVLSLPYPFASEINK Unmodified 2351.2049 0.20491398 2577 Q9BYD6 MRPL1 39S ribosomal protein L1, mitochondrial yes yes 0 0 0 0 0 8 0 1 88.041 88.041 3 0.0002471 28375 TMT1-7 58.883 41.861 7.3474 15.22 14.6 15.253 14.454 15.578 7 15 15 15 15 15 1 1 1 1 1 1 3382.9 14853 2577 14660 22793 29616 29616 1 NVESYTK Unmodified 839.4025 0.40249759 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 5 0 1 37.245 37.245 2 0.029899 8949 TMT1-4 90.709 34.162 507.14 460.31 397.16 292.78 725.16 483.53 477 471 407 302 722 473 1 1 1 1 1 1 37059 14854 478 14661 22794 29617 29617 1 NVEVIELAK Unmodified 1013.5757 0.57571092 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 5 0 1 57.389 57.389 2 0.015984 16896 TMT1-4 80.706 36.259 184.49 202.34 199.48 135 209.89 317.01 174 205 202 138 217 303 1 1 1 1 1 1 12763 14855 51 14662 22795 29618 29618 1 NVFDEAILAALEPPEPK Unmodified 1851.9618 0.96183016 1363 P60953 CDC42 Cell division control protein 42 homolog yes yes 0 0 0 0 0 5 1.91 1 2 2 1 87.596 87.596 3;4 2.7286E-10 28753 TMT1-5 113.88 93.776 737.33 1059.2 875.26 847.79 965.92 954.22 697 1056 906 840 992 921 15 15 15 15 15 15 184300 14856 1363 14663 22796;22797;22798;22799;22800;22801 29619;29620;29621;29622;29623;29624;29625;29626;29627;29628;29629;29630;29631;29632;29633 29628 15 NVFECNDQVVK Unmodified 1350.6238 0.6238001 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 5 0 1 50.553 50.553 2 0.0021038 14255 TMT1-4 94.616 65.143 15.702 36.659 35.043 36.602 34.947 29.917 15 36 36 36 36 29 1 1 1 1 1 1 6759.6 14857 647 14664 22802 29634 29634 1 NVFIAQNVASLQELGGSEK Unmodified 2003.0324 0.032369346 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 7 0 1 69.987 69.987 3 9.3982E-18 21403 TMT1-6 125.18 110.02 38.002 65.771 49.465 35.457 50.156 45.473 36 65 51 36 51 44 1 1 1 1 1 1 9456.8 14858 1977 14665 22803 29635 29635 1 NVFLLGFIPAK Unmodified 1217.7172 0.7172302 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 9 0 1 81.337 81.337 2 6.8732E-06 24063 TMT1-8 113.62 75.329 61.698 56.851 41.902 44.541 56.004 76.22 58 58 44 44 58 73 1 1 1 1 1 1 5601.7 14859 2328 14666 22804 29636 29636 1 NVFNALIR Unmodified 945.5396 0.53960019 1575 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 0 9 0 1 59.441 59.441 2 0.0073716 15485 TMT1-8 108.92 70.506 160.97 234.41 158.25 169.83 173.93 221.03 152 233 167 167 181 212 1 1 1 1 1 1 19453 14860 1575 14667 22805 29637 29637 1 NVFSTFR Unmodified 869.43955 0.43955179 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 9 0 1 50.737 50.737 2 0.0084713 12065 TMT1-8 129.39 60.158 115.58 160.84 95.89 95.191 97.619 136.86 109 160 102 94 102 131 1 1 1 1 1 1 11517 14861 2007 14668 22806 29638 29638 1 NVGCLQEALQLATSFAQLR Unmodified 2118.0892 0.089172718 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 91.899 91.899 2 0.0002671 28099 TMT1-8 62.68 47.414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14862 1184 14669 22807 29639 29639 1 NVGHNIYILAHQLAR Unmodified 1717.9376 0.93762152 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 9 0 1 51.735 51.735 4 6.6506E-06 12473 TMT1-8 88.075 66.202 77.575 86.443 53.463 83.396 45.569 114.89 73 87 58 80 51 109 1 1 1 1 1 1 8639.8 14863 1785 14670 22808 29640 29640 1 NVGLDIEAEVPAVK Unmodified 1452.7824 0.78240924 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5 0 1 65.799 65.799 3 2.2142E-05 20160 TMT1-4 92.457 61.229 239.07 266.19 169.77 223.91 225.71 224.88 225 268 182 218 233 217 2 2 2 2 2 2 34840 14864 1232 14671 22809 29641;29642 29641 2 NVGNAILYETVLTIMDIK Unmodified 2006.0758 0.075814065 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 8 0 2 103.05 103.05 3;4 5.6928E-08 33300 TMT1-7 98.062 73.008 25.456 34.112 20.76 43.789 46.778 41.305 24 34 23 42 48 40 3 3 3 3 3 3 3258.7 14865 199 14672 22810;22811 29643;29644;29645 29643 3 NVGQFSGFPFEK Unmodified 1355.651 0.65100113 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 0 8 0 1 66.542 66.542 3 0.00012609 20144 TMT1-7 96.82 83.157 130.37 190.48 109.31 92.42 202.43 164.78 123 189 116 94 203 160 1 1 1 1 1 1 30063 14866 1028 14673 22812 29646 29646 1 NVGSQTLQTFK Unmodified 1221.6354 0.63535107 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6.4 2.8 1 2 1 1 50.375 50.375 2;3 7.4238E-42 13610 TMT1-6 219.72 135.1 6098.1 7323.8 7275.1 5094.1 6254.8 7934.8 5758 7384 7368 5165 6464 7611 6 6 6 6 6 6 1429600 14867 565 14674 22813;22814;22815;22816;22817 29647;29648;29649;29650;29651;29652 29648 6 NVHGINFVSPVR Unmodified 1337.7204 0.7204181 1288 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 0 8.5 0.5 1 1 45.763 45.763 3 0.0021508 10187 TMT1-8 66.393 43.073 300.37 519.81 472.1 351.03 354.04 551.68 285 515 481 353 372 527 2 2 2 2 2 2 54576 14868 1288 14675 22818;22819 29653;29654 29654 2 NVHLAPGWLMQLEK Unmodified 1634.8603 0.8602824 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 9 0 1 66.117 66.117 3 0.0090255 18143 TMT1-8 52.254 31.827 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14869 1763 14676 22820 29655 29655 1 NVHPDVEK Unmodified 936.46649 0.46649483 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 31.927 31.927 3 0.028421 7061 TMT1-3 56.563 22.31 67.988 163.03 157.12 132.01 96.219 128.37 65 160 160 131 102 123 1 1 1 1 1 1 13085 14870 1138 14677 22821 29656 29656 1 NVIAVLEEFMK Unmodified 1291.6846 0.68460945 2670 Q9HAS0 C17orf75 Protein Njmu-R1 yes yes 0 0 0 0 0 8 0 1 93.397 93.397 3 0.0018887 30317 TMT1-7 78.653 46.155 7.4331 15.459 0 7.3723 14.817 15.567 7 15 0 7 15 15 1 1 0 1 1 1 1084.4 14871 2670 14678 22822 29657 29657 1 NVIEAVYNR Unmodified 1076.5615 0.56145784 1031 P35813-3;P35813 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 6 0 1 48.948 48.948 2 0.015997 13709 TMT1-5 80.688 31.892 84.36 170.25 104.53 62.236 137.12 127.21 80 167 109 65 138 123 1 1 1 1 1 1 10814 14872 1031 14679 22823 29658 29658 1 NVIFEDEEK Unmodified 1121.5241 0.52406928 2889 Q9UJY5-3;Q9UJY5-2;Q9UJY5;Q9UJY5-6;Q9UJY5-4 GGA1 ADP-ribosylation factor-binding protein GGA1 yes no 0 0 0 0 0 3 0 1 51.716 51.716 3 0.002289 15937 TMT1-2 57.347 26.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14873 2889 14680 22824 29659 29659 1 NVIFEISPTEEVGDFEVK Unmodified 2051.0099 0.0099025694 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 77.858 77.858 3 1.0837E-07 24902 TMT1-4 92.31 82.114 38.168 51.121 34.072 36.384 49.6 60.413 36 51 36 36 51 58 1 1 1 1 1 1 14938 14874 1139 14681 22825 29660 29660 1 NVIFQPVAELK Unmodified 1256.7129 0.71287311 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 7.5 0.5 1 1 65.701 65.701 3 0.0018887 19729 TMT1-6 78.653 48.321 176.6 246.05 226.23 229.49 156.86 211.92 167 246 233 225 167 203 2 2 2 2 2 2 28174 14875 1559 14682 22826;22827 29661;29662 29661 2 NVIFQPVAELKK Unmodified 1384.8078 0.80783613 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 1 9 0 1 59.502 59.502 3 0.00027882 15523 TMT1-8 95.631 65.696 168.91 229.86 271.4 209.82 187.7 284.6 160 231 273 210 198 272 1 1 1 1 1 1 20653 14876 1559 14683 22828 29663 29663 1 NVIGLQMGTNR Unmodified 1201.6237 0.62374052 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 8.5 0.5 1 1 49.527 49.527 2 4.1328E-07 13351 TMT1-7 150.15 112.68 362.52 389.76 236.26 299.91 216.73 567.32 341 393 254 291 239 538 3 3 3 3 3 3 94035 14877 1052 14684 22829;22830 29664;29665;29666 29664 3 NVIIWGNHSSTQYPDVNHAK Unmodified 2279.1083 0.10832826 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 7 0 1 47.893 47.893 4 1.7091E-10 12672 TMT1-6 101.49 72.913 130 168.94 189.75 88.779 141.1 188.92 123 170 189 94 145 181 1 1 1 1 1 1 28433 14878 1074 14685 22831 29667 29667 1 NVILEVNEAVLTESMIQNLIK Unmodified 2369.2876 0.28759775 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 99.449 99.449 4 2.1469E-06 32403 TMT1-6 77.554 54.901 62.615 80.088 48.45 36.168 73.655 60.792 59 80 51 37 74 59 3 3 3 3 3 3 5914.5 14879 228 14686 22832 29668;29669;29670 29669 3 NVKPDQWVK Unmodified 1112.5978 0.59784335 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 1 8 0 1 45.358 45.358 3 0.0031752 11733 TMT1-7 90.108 38.182 195.24 357.25 246.08 312.01 239.34 380.13 185 352 261 303 255 363 1 1 1 1 1 1 27545 14880 1324 14687 22833 29671 29671 1 NVLAPYAVPSELVLVEEIPR Unmodified 2207.2202 0.22017012 1939 Q4G176 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 84.514 84.514 3 1.0411E-05 27708 TMT1-5 60.032 42.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14881 1939 14688 22834;22835 29672;29673 29673 2 NVLFSHLDDNER Unmodified 1457.6899 0.68990583 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 4.5 0.5 1 1 48.185 48.185 3 7.8861E-09 13357 TMT1-4 132.9 118.87 376.77 747.59 604.42 465.83 572.48 799.15 358 736 621 469 594 765 3 3 3 3 3 3 97808 14882 635 14689 22836;22837 29674;29675;29676 29676 3 NVLISVLQAIR Unmodified 1224.7554 0.75540662 2399 Q96F07-2;Q96F07 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 0 9 0 1 81.923 81.923 2 0.020724 24293 TMT1-8 67.93 43.008 30.549 43.78 58.406 35.219 34.461 45.921 29 44 58 36 36 44 1 1 1 1 1 1 3343.5 14883 2399 14690 22838 29677 29677 1 NVLIVEDIIDTGK Unmodified 1427.7872 0.78716026 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 5 0 1 76.678 76.678 3 1.8709E-11 24426 TMT1-4 142.1 115.48 161.31 171.68 154.04 154.5 188.51 273.91 152 174 159 153 196 262 2 2 2 2 2 2 36186 14884 395 14691 22839 29678;29679 29678 2 NVLIVEDVVGTGR Unmodified 1369.7565 0.75652884 2727 Q9NRG1-2;Q9NRG1 PRTFDC1 Phosphoribosyltransferase domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 63.969 63.969 3 1.2401E-05 19479 TMT1-4 103.83 98.111 30.769 35.759 28.11 21.721 34.532 61.909 29 36 29 22 36 59 1 1 1 1 1 1 6052 14885 2727 14692 22840 29680 29680 1 NVLLDPQLVPGGGASEMAVAHALTEK Unmodified 2616.3581 0.35813694 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 7 0 1 74.752 74.752 4 2.3239E-16 23274 TMT1-6 99.135 87.348 61.375 87.251 70.509 65.822 54.256 98.656 58 87 73 65 58 94 1 1 1 1 1 1 9693 14886 1178 14693 22841 29681 29681 1 NVLLLGEDGAGK Unmodified 1184.6401 0.6401021 3057 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 0 6 0 1 59.01 59.01 2 7.9792E-05 17695 TMT1-5 106.26 62.95 85.046 85.818 60.748 89.89 84.026 82.882 80 87 65 87 87 80 1 1 1 1 1 1 9532.2 14887 3057 14694 22842 29682 29682 1 NVLLVTQHYAK Unmodified 1284.719 0.71902112 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 9 0 1 48.423 48.423 3 0.003159 11161 TMT1-8 64.55 42.993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14888 1115 14695 22843 29683 29683 1 NVLSLTNK Unmodified 887.50763 0.50763136 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 8.33 0.471 2 1 51.57 51.57 2;3 6.9363E-09 12364 TMT1-8 176.6 78.081 250.49 600.52 491.92 385.97 525.65 563.84 239 588 505 389 538 543 3 3 3 3 3 3 121530 14889 500 14696 22844;22845;22846 29684;29685;29686 29686 3 NVLSLTNKGEVFNELVGK Unmodified 1960.0629 0.062941193 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 1 8 0 1 76.039 76.039 3 0.020189 23872 TMT1-7 45.876 30.721 46.675 57.876 41.183 60.988 55.541 67.705 44 58 44 59 58 65 1 1 1 1 1 1 3095.8 14890 500 14697 22847 29687 29687 1 NVLVSEDNVAK Unmodified 1186.6194 0.61936665 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 4.5 0.5 1 1 47.856 47.856 3 7.1424E-05 13177 TMT1-4 103.91 62.57 799.26 1105.9 886.88 881.34 1062.7 1107.1 755 1104 921 873 1091 1067 2 2 2 2 2 2 85979 14891 1083 14698 22848;22849 29688;29689 29689 2 NVLVTLYERDEDNNLLTEK Unmodified 2277.1489 0.14885567 590 P09486 SPARC SPARC yes yes 0 0 0 0 1 5.33 0.471 2 1 67.15 67.15 3;4 4.2658E-17 20825 TMT1-4 118.46 93.562 292.78 307.12 305.67 269.72 323.18 432.1 276 312 312 269 335 414 3 3 3 3 3 3 225150 14892 590 14699 22850;22851;22852 29690;29691;29692 29691 3 NVNAGGHK Unmodified 795.39875 0.39874961 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 6 0 1 22.774 22.774 3 0.0012226 3866 TMT1-5 107.01 91.568 42.605 31.805 25.98 24.948 44.043 24.327 40 33 27 25 44 24 1 1 1 1 1 1 1451.8 14893 833 14700 22853 29693 29693 1 NVNFFTKPPIGTWDQVAEVLSWQFSSTTK Unmodified 3326.6612 0.66117847 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 1 9 0 1 93.764 93.764 5 0.0043398 28767 TMT1-8 35.875 18.756 30.739 51.865 19.535 22.498 20.388 46.322 29 51 22 22 22 44 1 1 1 1 1 1 3775.8 14894 1073 14701 22854 29694 29694 1 NVNIQNFHISWK Unmodified 1498.7681 0.76809658 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 9 0 1 61.087 61.087 3 2.9853E-10 16221 TMT1-8 146.07 100.71 1222.8 1436.2 1383.9 1084.9 1273.3 1556.3 1154 1449 1409 1090 1316 1494 3 3 3 3 3 3 312710 14895 672 14702 22855 29695;29696;29697 29696 3 NVNPVALPR Unmodified 978.56106 0.56106391 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 7 0 1 44.895 44.895 2 0.0012881 11476 TMT1-6 121.62 92.046 84.318 131.28 144.52 91.289 150.96 111.89 80 131 145 94 152 109 1 1 1 1 1 1 11350 14896 564 14703 22856 29698 29698 1 NVNQSLLELHK Unmodified 1293.7041 0.70409934 453 P02794 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 0 0 0 0 0 6.5 0.5 1 1 49.894 49.894 3 0.00014461 13465 TMT1-6 101.89 83.143 254.14 328.06 290.57 268.98 352.42 373.7 240 329 299 268 361 360 2 2 2 2 2 2 46857 14897 453 14704 22857;22858 29699;29700 29700 2 NVNTALNTTQIPSSIEDIFNDDR Unmodified 2576.2354 0.23543884 1721 Q13564-3;Q13564-2;Q13564;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 0 0 5 0 1 78.927 78.927 3 1.6962E-21 25349 TMT1-4 95.138 90.786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14898 1721 14705 22859 29701 29701 1 NVNVQNFHISWK Unmodified 1484.7524 0.75244651 195 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 0 9 0 1 58.117 58.117 3 8.9254E-08 14973 TMT1-8 121.68 81.664 593.35 856.62 719.41 797.77 632.58 980.79 561 854 748 780 672 937 1 1 1 1 1 1 87187 14899 195 14706 22860 29702 29702 1 NVPHEDICEDSDIDGDYR Unmodified 2147.8702 0.87019098 85 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 0 2 0 1 44.759 44.759 3 2.3505E-14 12860 TMT1-1 123.4 119.43 15.781 29.326 27.877 37.306 20.256 30.336 15 29 29 36 22 29 1 1 1 1 1 1 6925.7 14900 85 14707 22861 29703 29703 1 NVPLPEFPEHPFQEEHLK Unmodified 2186.0797 0.07965389 710 P14735 IDE Insulin-degrading enzyme yes yes 0 0 0 0 0 5 0 1 58.796 58.796 4 0.01362 17432 TMT1-4 41.257 22.719 92.319 115.94 75.189 88.645 104.48 159.05 87 116 80 87 109 152 1 1 1 1 1 1 8318.5 14901 710 14708 22862 29704 29704 1 NVPNLHVMK Unmodified 1050.5644 0.56443473 1137 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 0 8 0 1 44.486 44.486 3 0.0026419 11337 TMT1-7 83.948 30.191 331.36 478.27 349.71 357.69 446.07 512.81 313 476 366 354 459 493 1 1 1 1 1 1 29237 14902 1137 14709 22863 29705 29705 1 NVPNWHR Unmodified 921.45693 0.45693319 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 7.5 0.5 1 1 32.658 32.658 3 0.0046756 6721 TMT1-6 94.407 60.669 169.26 270.77 177.82 214.99 209.57 249.86 160 268 189 210 218 240 3 3 3 3 3 3 21365 14903 1445 14710 22864;22865 29706;29707;29708 29706 3 NVPQEESLEDSDVDADFK Unmodified 2035.8858 0.88582427 78 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 0 2 0 1 58.878 58.878 3 0.00048883 18422 TMT1-1 64.249 52.357 46.671 57.864 41.905 44.802 42.14 53.164 44 58 44 44 44 51 1 1 1 1 1 1 6161.2 14904 78 14711 22866 29709 29709 1 NVPVITGSK Unmodified 913.52328 0.52328142 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 7.5 0.5 1 1 46.368 46.368 2 0.00010695 12077 TMT1-7 150.35 98.496 253.59 424.77 299.9 269.44 356.22 384.26 240 420 313 269 365 370 3 3 3 3 3 3 46009 14905 1012 14712 22867;22868 29710;29711;29712 29711 3 NVPYVFVR Unmodified 992.54435 0.54435122 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 54.724 54.724 2 0.009261 15522 TMT1-7 100.75 59.103 122.34 233.79 160.27 129.75 206.1 221.18 116 230 167 131 210 213 1 1 1 1 1 1 31649 14906 1323 14713 22869 29713 29713 1 NVQAEEMVEFSSGLK Unmodified 1666.7872 0.78723662 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 5 0 2 65.155 65.155 3 7.5645E-15 19980 TMT1-4 130.95 113.67 391 521.49 388.04 403.94 480.68 691.98 369 521 406 399 500 662 3 3 3 3 3 3 40296 14907 888 14714 22870;22871 29714;29715;29716;29717 29715 4 NVQALEIELQSQLALK Unmodified 1796.0044 0.0043636815 30 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 0 6 0 1 79.534 79.534 3 0.00010281 25772 TMT1-5 57.973 36.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 14908 30 14715 22872 29718 29718 1 NVQFVFDAVTDVIIK Unmodified 1706.9243 0.92432245 480;577 P04899;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P08754 GNAI2;GNAI1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha no no 0 0 0 0 0 7.86 0.35 1 6 91.906 91.906 2;3 8.039E-15 29414 TMT1-7 139.89 116.03 333.73 498.97 502.68 320.52 484.64 657.75 316 498 507 329 499 630 5 6 6 6 6 6 58978 14909 480;577 14716 22873;22874;22875;22876;22877;22878;22879 29719;29720;29721;29722;29723;29724;29725;29726;29727 29720 9 NVQGIIEILK Unmodified 1125.6758 0.67575932 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 8 0 1 71.731 71.731 3 0.00013577 22144 TMT1-7 109.42 93.528 61.584 72.725 47.536 66.729 78.825 52.117 58 73 51 65 80 51 1 1 1 1 1 1 7361.4 14910 1101 14717 22880 29728 29728 1 NVQICSIFDIATELNR Unmodified 1891.9462 0.94619688 646 P11182 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 7 0 1 83.428 83.428 3 5.8087E-05 26652 TMT1-6 63.46 54.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14911 646 14718 22881 29729 29729 1 NVQLQENEIR Unmodified 1241.6364 0.6364137 1044 P36873;P36873-2 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 0 0 0 2 0 1 41.72 41.72 2 0.0074661 11635 TMT1-1 87.942 45.867 54.008 56.867 71.998 74.16 71.154 52.336 51 58 73 73 73 51 1 1 1 1 1 1 8909.5 14912 1044 14719 22882 29730 29730 1 NVQLTENEIR Unmodified 1214.6255 0.62551466 1413 P62136;P62136-2 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 0 0 3 0.816 1 1 1 43.54 43.54 2 1.4196E-09 12677 TMT1-2 174.86 101.99 422.24 515.4 371.57 389.68 477.2 507.66 398 517 390 385 490 489 4 4 4 4 4 4 81332 14913 1413 14720 22883;22884;22885 29731;29732;29733;29734 29732 4 NVRPDYLK Unmodified 1003.5451 0.5450795 465 P04179-4;P04179;P04179-2;P04179-3 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 1 8 1 1 1 38.967 38.967 3 0.015734 7736 TMT1-8 58.676 35.248 718.6 1023.3 807.44 720.47 744.08 852.89 679 1020 836 716 771 820 2 2 2 2 2 2 81435 14914 465 14721 22886;22887 29735;29736 29736 2 NVSIGIVGK Unmodified 885.52837 0.5283668 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 8 0 1 53.043 53.043 2 0.00097707 14748 TMT1-7 126.07 76.028 336.77 539.75 469.45 306.7 336.99 467.95 319 536 478 312 351 448 2 2 2 2 2 2 115490 14915 890 14722 22888 29737;29738 29737 2 NVSLGNVLAVAYATQR Unmodified 1674.9053 0.90531834 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 9 0 1 71.396 71.396 3 6.7055E-06 20182 TMT1-8 73.788 48.933 68.994 63.294 72.61 50.081 70.958 59.803 65 65 73 51 72 58 2 2 2 2 2 2 12151 14916 2782 14723 22889 29739;29740 29739 2 NVSNLKPVPLIGPK Unmodified 1474.8871 0.88714908 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 1 9 0 1 56.354 56.354 3 8.432E-05 14301 TMT1-8 80.905 69.373 77.171 101.51 108.68 62.402 115.14 96.918 73 102 109 65 116 94 1 1 1 1 1 1 11883 14917 2206 14724 22890 29741 29741 1 NVSQHLEDLER Unmodified 1338.6528 0.65279205 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 3 0 1 39.912 39.912 3 1.6779E-05 11259 TMT1-2 113.95 78.209 46.472 81.055 55.712 43.707 56.592 60.213 44 80 58 44 58 58 1 1 1 1 1 1 7534.4 14918 1138 14725 22891 29742 29742 1 NVTAIQGPGGK Unmodified 1040.5615 0.56145784 1213 P50213 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes yes 0 0 0 0 0 7 0 1 41.991 41.991 2 1.1452E-05 10372 TMT1-6 124.67 90.416 68.494 140.69 91.093 41.04 86.273 82.818 65 138 94 44 87 80 1 1 1 1 1 1 7073.4 14919 1213 14726 22892 29743 29743 1 NVTELNEPLSNEER Unmodified 1642.7798 0.77984305 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 2.33 0.471 2 1 47.572 47.572 2;3 3.5204E-66 13979 TMT1-1 241.84 186.38 276.11 392.95 329.98 314.64 356.7 462.06 261 392 341 312 370 443 3 3 3 3 3 3 267350 14920 1411 14727 22893;22894;22895 29744;29745;29746 29744 3 NVTGHYISPFHDIPLK Unmodified 1836.9523 0.95226853 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 8 0 1 53.961 53.961 4 0.018935 15184 TMT1-7 43.557 12.685 264.57 354.56 318.56 186.86 213.08 368.09 250 355 323 192 224 351 1 1 1 1 1 1 25029 14921 2633 14728 22896 29747 29747 1 NVTLPAVFK Unmodified 987.57532 0.57531699 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 9 0 1 63.123 63.123 2 0.0017031 17004 TMT1-8 118.18 72.019 275.82 462.31 319.67 282.57 409.36 402.99 261 457 334 283 417 389 2 2 2 2 2 2 51029 14922 1041 14729 22897 29748;29749 29749 2 NVTNNLK Unmodified 801.43447 0.43446642 520;1486;1487;518 P06753-5;P06753-4;P06753-7;P06753;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 0 0 0 0 0 5 2.35 1 2 1 37.053 37.053 2;3 0.0047265 8905 TMT1-5 136.16 55.976 3763.3 4776.4 4926.2 3976.1 5033.1 4801.6 3557 4805 4999 3993 5144 4639 6 6 6 6 6 6 599930 14923 520;518;1486;1487 14730 22898;22899;22900;22901 29750;29751;29752;29753;29754;29755 29751 6 NVTSWFTSK Unmodified 1068.524 0.52400971 143 O15357;O15357-2 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 0 0 0 0 0 9 0 1 61.931 61.931 2 0.0016601 16486 TMT1-8 101.38 53.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14924 143 14731 22902 29756 29756 1 NVTVQPDDPISFMQLTAK Unmodified 2003.0034 0.0033774035 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 7 0 1 75.449 75.449 3 4.6782E-14 23535 TMT1-6 117.3 101.91 46.803 50.678 25.727 53.296 48.566 67.904 44 51 29 51 51 65 1 1 1 1 1 1 12126 14925 1286 14732 22903 29757 29757 1 NVTWVIVNLCR Unmodified 1372.7285 0.72853995 78 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 0 9 0 1 70.542 70.542 3 0.006066 19765 TMT1-8 60.255 38.262 30.762 28.183 35.812 29.037 27.966 30.116 29 29 36 29 29 29 1 1 1 1 1 1 6508.4 14926 78 14733 22904 29758 29758 1 NVVAECLGK Unmodified 988.50117 0.50116577 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 6 0 1 48.325 48.325 2 0.00029115 13479 TMT1-5 141.88 115.94 208.18 161.01 221.8 196.95 215.91 211.3 196 168 223 196 222 204 1 1 1 1 1 1 17004 14927 2116 14734 22905 29759 29759 1 NVVFVIDK Unmodified 932.53312 0.53311783 1784 Q14624-4;Q14624-3;Q14624-2;Q14624 ITIH4 Inter-alpha-trypsin inhibitor heavy chain H4;70 kDa inter-alpha-trypsin inhibitor heavy chain H4;35 kDa inter-alpha-trypsin inhibitor heavy chain H4 yes no 0 0 0 0 0 7 0 1 60.971 60.971 2 0.013375 17835 TMT1-6 95.358 42.188 68.722 93.836 92.48 72.993 68.276 137.7 65 94 94 73 73 131 1 1 1 1 1 1 8105.3 14928 1784 14735 22906 29760 29760 1 NVVHELR Unmodified 865.477 0.47699993 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 29.079 29.079 3 0.014026 6022 TMT1-3 75.109 8.0772 23.197 28.548 44.514 28.375 35.582 22.437 22 29 44 29 36 22 1 1 1 1 1 1 3881.1 14929 1763 14736 22907 29761 29761 1 NVVLQTLEGHLR Unmodified 1377.7728 0.7728476 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 7 0 1 58.576 58.576 3 0.000868 16918 TMT1-6 78.705 59.434 84.952 93.111 70.412 57.456 92.59 90.1 80 94 73 58 94 87 1 1 1 1 1 1 8945.5 14930 1767 14737 22908 29762 29762 1 NVVTIFSAPNYCYR Unmodified 1702.8137 0.81372614 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 9 0 1 64.527 64.527 3 3.1705E-07 17465 TMT1-8 105.99 84.233 84.647 108.45 108.54 55.315 85.6 113.75 80 109 109 58 88 109 2 2 2 2 2 2 15894 14931 1482 14738 22909 29763;29764 29763 2 NVVVTILDDGIER Unmodified 1441.7777 0.77765821 933 P29122-2;P29122-8;P29122;P29122-7;P29122-6;P29122-5;P29122-4;P29122-3 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 4 0 1 72.032 72.032 2 0.00046901 22986 TMT1-3 93.348 50.265 69.913 86.537 78.795 49.85 63.639 60.012 66 87 80 51 65 58 2 2 2 2 2 2 7609.3 14932 933 14739 22910 29765;29766 29766 2 NVVVVDGVR Unmodified 955.54508 0.5450795 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 4 0 1 43.24 43.24 2 0.0019967 11614 TMT1-3 108.57 67.688 61.285 87.002 85.732 64.486 77.059 106.53 58 87 87 65 80 102 1 1 1 1 1 1 7936.2 14933 1312 14740 22911 29767 29767 1 NVWSFLK Unmodified 892.48069 0.48068833 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 9 0 1 69.126 69.126 2 0.0058957 19333 TMT1-8 98.458 39.477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14934 336 14741 22912 29768 29768 1 NVWVHLDGPGVTR Unmodified 1448.7524 0.75244651 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 8 1 1 1 50.57 50.57 3 1.6786E-09 13749 TMT1-6 128.95 101.98 376.99 524.43 395.86 396.1 466.08 366.2 356 523 413 392 475 356 3 3 3 3 3 3 203130 14935 393 14742 22913;22914 29769;29770;29771 29769 3 NVWVHLDGPGVTRPMKK Unmodified 1933.0356 0.035621005 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 2 9 0 1 47.721 47.721 5 4.0554E-07 10872 TMT1-8 78.441 52.006 498.2 533.29 395.27 383.52 381.12 663.9 469 539 413 379 403 633 1 1 1 1 1 1 27697 14936 393 14743 22915 29772 29772 1 NVYAIIMLTK Unmodified 1164.6577 0.65766641 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 9 0 1 74.923 74.923 2 1.5686E-05 21587 TMT1-8 136.63 93.388 69.194 41.187 57.641 51.526 41.574 60.642 65 44 58 51 44 58 1 1 1 1 1 1 5111.2 14937 1658 14744 22916 29773 29773 1 NWACFTGK Unmodified 982.43309 0.43308621 1288 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 0 9 0 1 54.933 54.933 2 0.0028383 13706 TMT1-8 132.9 60.075 160.75 240.27 190.84 159.02 238.34 218.12 152 239 197 160 242 211 1 1 1 1 1 1 23325 14938 1288 14745 22917 29774 29774 1 NWASGHDLQGK Unmodified 1211.5683 0.56833414 340 O95182 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 0 0 0 0 0 6 0 1 39.21 39.21 3 4.2671E-06 9858 TMT1-5 118.77 94.512 169.13 246.67 219.72 254.24 198.44 277.89 160 246 228 248 210 266 1 1 1 1 1 1 9168.2 14939 340 14746 22918 29775 29775 1 NWMNSLGVNPR Unmodified 1286.619 0.6189895 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 9 0 1 57.654 57.654 2 1.3158E-16 14825 TMT1-8 180.07 135.11 191.91 265.24 162.43 201.02 187.73 234.49 181 264 174 196 196 225 2 2 2 2 2 2 34307 14940 690 14747 22919 29776;29777 29777 2 NWMSQLQANAYCENPDIVLIGNK Unmodified 2677.2629 0.26285634 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 7.33 0.471 2 1 78.149 78.149 3;4;5 4.9607E-10 24562 TMT1-6 74.364 59.956 138.45 203.61 182.32 207.91 164.91 250.07 131 203 189 203 175 239 3 3 3 3 3 3 24628 14941 50 14748 22920;22921;22922 29778;29779;29780;29781 29779 4 NWPLEVLVTDSVQNSPDDLER Unmodified 2425.1761 0.17613305 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 4.5 0.5 1 1 83.137 83.137 3 4.843E-19 26957 TMT1-4 101.89 85.589 0 23.31 5.8629 7.0171 15.126 7.0304 0 22 7 7 15 7 0 1 1 1 1 1 3875.8 14942 2707 14749 22923;22924 29782;29783 29783 2 NWPSDEMPDFPK Unmodified 1461.6235 0.62346575 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 5 0 1 65.346 65.346 3 0.035444 20001 TMT1-4 46.481 35.041 46.539 57.498 64.386 50.725 62.793 83.488 44 58 65 51 65 80 1 1 1 1 1 1 7260.6 14943 1616 14750 22925 29784 29784 1 NWRDPDQTDGLGLSYLSSHIANVER Unmodified 2842.3634 0.36343332 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 1 5.4 2.42 1 1 1 1 1 63.435 63.435 3;4 2.1454E-84 19326 TMT1-5 217.89 190.4 597.53 660.47 724.87 671.8 687.78 942.97 564 670 737 666 718 903 7 7 7 7 7 7 287000 + 14944 506 14751 22926;22927;22928;22929;22930 29785;29786;29787;29788;29789;29790;29791 29787 7 NWSAAGNAFCQAAQLHLQLQSK Unmodified 2442.1863 0.186261 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 9 0 1 66.33 66.33 3 0.00032083 18205 TMT1-8 50.77 39.31 30.61 20.205 68.11 19.162 43.869 37.124 29 22 65 22 44 36 1 1 1 1 1 1 8266.5 14945 1304 14752 22931 29792 29792 1 NWYIQATCATSGDGLYEGLDWLSNQLR Unmodified 3130.4454 0.44544839 1519 P84077 ARF1 ADP-ribosylation factor 1 yes yes 0 0 0 0 0 7 0 1 93.062 93.062 3 4.3518E-08 30190 TMT1-6 73.058 71.078 7.476 6.9439 0 7.651 0 7.462 7 7 0 7 0 7 1 1 0 1 0 1 4915.4 14946 1519 14753 22932 29793 29793 1 NWYVQPSCATSGDGLYEGLTWLTSNYK Unmodified 3109.4128 0.41275128 1436 P62330 ARF6 ADP-ribosylation factor 6 yes yes 0 0 0 0 0 8 0 2 88.128 88.128 3;4 3.9241E-09 28401 TMT1-7 66.793 55.89 37.927 65.563 62.173 90.51 46.561 76.489 36 65 65 87 51 73 1 1 1 1 1 1 9287.6 14947 1436 14754 22933;22934 29794;29795 29795 2 NYAAALETFTEGQK Unmodified 1541.7362 0.73618733 2979 Q9Y2Z0-2;Q9Y2Z0 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 0 6 0 1 65.909 65.909 3 0.0043422 20435 TMT1-5 61.409 49.433 68.772 93.976 83.883 95.754 105.73 113.18 65 94 87 94 109 109 1 1 1 1 1 1 8708.9 14948 2979 14755 22935 29796 29796 1 NYADQISR Unmodified 965.45666 0.45665842 219 O60271-5;O60271-3;O60271-4;O60271-2;O60271;Q9UPT6-2;Q9UPT6 SPAG9;MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3 yes no 0 0 0 0 0 3 0 1 34.673 34.673 2 0.0063034 9199 TMT1-2 72.038 35.063 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14949 219 14756 22936 29797 29797 1 NYCGLPGEYWLGNDK Unmodified 1784.7828 0.78281994 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.2 2.14 1 3 1 66.526 66.526 2;3;4 3.6009E-11 20625 TMT1-5 127.07 109.67 2092.7 2716.1 2333.2 2071.9 2623.7 3310.7 1976 2722 2402 2068 2708 3176 6 6 6 6 6 6 662120 14950 438 14757 22937;22938;22939;22940;22941 29798;29799;29800;29801;29802;29803 29800 6 NYDGDVQSDILAQGFGSLGLMTSVLVCPDGK Unmodified 3255.5428 0.54277918 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 7.5 0.5 2 2 99.181 99.181 4;5 0.00028146 32246 TMT1-6 44.021 38.055 46.672 80.999 58.252 36.159 72.586 91.936 44 80 58 36 74 88 4 5 4 4 5 4 8675.4 14951 1164 14758 22942;22943;22944;22945 29804;29805;29806;29807;29808 29804 5 NYEEIAK Unmodified 865.41815 0.41814765 1197 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 0 4 0 1 42.275 42.275 2 0.0079109 11203 TMT1-3 122.18 39.871 418.4 582.06 600.62 356.35 710.29 618.27 396 583 604 371 715 599 1 1 1 1 1 1 70525 14952 1197 14759 22946 29809 29809 1 NYEFPHLQNFIK Unmodified 1548.7725 0.77251325 3065 Q9Y6X5 ENPP4 Bis(5'-adenosyl)-triphosphatase ENPP4 yes yes 0 0 0 0 0 8 0 1 62.322 62.322 3 4.3261E-05 18460 TMT1-7 102.62 88.363 77.007 147.46 97.253 87.003 121.85 81.803 73 145 102 87 123 80 1 1 1 1 1 1 13264 14953 3065 14760 22947 29810 29810 1 NYGILADATEQVGQHK Unmodified 1742.8588 0.85876208 2591 Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 0 5 0 1 53.767 53.767 4 0.027573 15562 TMT1-4 39.685 18.455 84.805 124 68.895 49.919 91.325 137.04 80 123 73 51 94 131 1 1 1 1 1 1 8909 14954 2591 14761 22948 29811 29811 1 NYIQGINLVQAK Unmodified 1359.751 0.75104953 1276 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 0 0 8 0 1 61.027 61.027 3 9.1887E-05 17912 TMT1-7 99.215 66.692 108.35 90.921 107 110.81 103.72 151.61 102 94 109 109 109 145 1 1 1 1 1 1 22715 14955 1276 14762 22949 29812 29812 1 NYISQYSEIAIQMMMHMQPK Unmodified 2442.1204 0.12041455 538 P07602 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes yes 0 0 0 0 0 9 0 1 85.328 85.328 4 4.8848E-19 25595 TMT1-8 111.66 87.859 124.57 122.54 59.754 58.28 82.548 168.2 117 124 65 58 87 160 2 2 2 2 2 2 14153 14956 538 14763 22950 29813;29814 29813 2 NYITMDELR Unmodified 1153.5438 0.54375887 672 P12814;P12814-3;P12814-2 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 3.5 0.5 1 1 53.856 53.856 2 3.3678E-20 15728 TMT1-3 200.07 123.3 586.82 842.77 746.83 711.64 824.7 862.31 555 841 769 706 848 831 3 3 3 3 3 3 207010 14957 672 14764 22951;22952 29815;29816;29817 29816 3 NYIVEDGDIIFFK Unmodified 1571.7872 0.78716026 2745 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 5 0 1 74.863 74.863 3 0.0021846 23801 TMT1-4 68.809 38.751 30.736 43.223 27.327 29.252 43.405 37.137 29 43 29 29 44 36 1 1 1 1 1 1 16661 14958 2745 14765 22953 29818 29818 1 NYLDAIYDVTVVYEGK Unmodified 1860.9145 0.91454562 2750 Q9NUQ2 AGPAT5 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon yes yes 0 0 0 0 0 6 0 1 85.833 85.833 3 0.0024882 28065 TMT1-5 60.307 42.39 23.375 21.486 20.661 38.968 12.851 30.547 22 22 22 37 15 29 1 1 1 1 1 1 3116.6 14959 2750 14766 22954 29819 29819 1 NYLDWLTSIPWGK Unmodified 1591.8035 0.80347903 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 9 0 1 91.596 91.596 3 0.0050465 27947 TMT1-8 56.569 36.29 35.07 44.123 19.647 29.919 32.26 25.729 33 44 22 29 33 25 1 1 1 1 1 1 7744.6 14960 1042 14767 22955 29820 29820 1 NYLEPGKECVQPATK Unmodified 1732.8454 0.8454202 748 P16615;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 1 6 0 1 45.007 45.007 3 0.0018912 12183 TMT1-5 67.648 51.706 91.882 162.22 109.35 133.89 147.42 157.83 87 160 116 131 152 152 1 1 1 1 1 1 16792 14961 748 14768 22956 29821 29821 1 NYLGGFALSVAHGR Unmodified 1460.7524 0.75244651 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 9 0 1 55.355 55.355 3 4.6155E-14 13878 TMT1-8 137.8 112.98 92.271 108.25 89.754 112.09 90.078 90.172 87 109 94 109 94 87 1 1 1 1 1 1 14447 14962 1115 14769 22957 29822 29822 1 NYLLQCTR Unmodified 1066.523 0.52296385 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 7 0 1 44.003 44.003 2 0.0069365 11141 TMT1-6 103.8 81.656 131.1 82.423 78.068 64.79 85.18 82.849 123 87 80 65 87 80 1 1 1 1 1 1 13449 14963 2444 14770 22958 29823 29823 1 NYLLSLPHK Unmodified 1083.6077 0.60767975 930 P28482 MAPK1 Mitogen-activated protein kinase 1 yes yes 0 0 0 0 0 9 0 1 53.816 53.816 3 0.0002418 13307 TMT1-8 122.28 76.969 259.15 461.81 416.44 323.07 448.33 401.88 246 457 425 326 456 389 1 1 1 1 1 1 36790 14964 930 14771 22959 29824 29824 1 NYLPAINGIVFLVDCADHSR Unmodified 2273.1263 0.12628651 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 0 7.5 0.5 1 1 83.992 83.992 3 7.3205E-06 26886 TMT1-7 62.95 45.929 46.648 65.356 39.366 91.717 54.641 52.807 44 65 44 87 58 51 2 2 2 2 2 2 6859.7 14965 2721 14772 22960;22961 29825;29826;29827 29827 3 NYLQSLPSK Unmodified 1048.5553 0.55530983 910 P27361;P27361-3 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 0 8 0 1 52.454 52.454 3 0.0026844 14577 TMT1-7 83.647 52.775 53.656 103.38 91.654 80.389 84.463 82.87 51 102 94 80 87 80 1 1 1 1 1 1 8692.1 14966 910 14773 22962 29828 29828 1 NYLSCDVEVR Unmodified 1253.571 0.57103625 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 46.848 46.848 2 2.5268E-06 14080 TMT1-2 158.47 118.92 176.41 277.9 231.55 237.26 192.07 272.75 167 276 240 233 203 261 2 2 2 2 2 2 41378 14967 1112 14774 22963;22964 29829;29830 29829 2 NYLSIFR Unmodified 911.4865 0.48650199 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 9 0 1 60.999 60.999 2 0.009079 16084 TMT1-8 126.28 70.837 335.15 385.92 512.33 304.45 494.76 384.57 317 392 509 315 499 374 1 1 1 1 1 1 97461 14968 536 14775 22965 29831 29831 1 NYLSLAPLFFK Unmodified 1311.7227 0.72270951 97 O14617-4;O14617;O14617-5 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 9 0 2 84.352 84.352 2;3 0.016144 25218 TMT1-8 51.727 23.559 77.126 85.195 129.93 141.7 73.802 98.098 73 87 131 138 80 94 2 2 2 2 2 2 4901.9 14969 97 14776 22966;22967 29832;29833 29832 2 NYLSPTFK Unmodified 968.49673 0.49673232 2789 Q9NYU2;Q9NYU2-2;Q9NYU1 UGGT1;UGGT2 UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2 yes no 0 0 0 0 0 8 0 1 53.283 53.283 2 0.017709 14908 TMT1-7 90.629 37.459 122.46 238.46 135.05 155.22 152.47 225.91 116 234 145 152 160 216 1 1 1 1 1 1 17105 14970 2789 14777 22968 29834 29834 1 NYNKPWEPK Unmodified 1174.5771 0.57710791 455 P03928 MT-ATP8 ATP synthase protein 8 yes yes 0 0 0 0 1 8 0 1 43.818 43.818 3 0.0014815 11137 TMT1-7 88.496 73.464 408.73 650.69 544.19 390.2 541.95 723.27 387 646 557 396 559 693 1 1 1 1 1 1 30803 14971 455 14778 22969 29835 29835 1 NYPATFWVNPQFK Unmodified 1610.7882 0.78816332 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 6.33 3.77 1 2 69.952 69.952 2;3 1.7812E-16 19529 TMT1-8 158.94 106.15 272.04 373.36 309.37 245.53 319.09 370.39 257 373 318 247 328 356 4 4 4 4 4 4 172300 14972 536 14779 22970;22971;22972 29836;29837;29838;29839 29838 4 NYTDEAIETDDLTIK Unmodified 1739.8101 0.81014013 108 O14818;O14818-2 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 0 2.67 0.471 1 2 61.2 61.2 2;3;4 1.1787E-16 19621 TMT1-2 147.66 125.9 176.52 285.76 206.5 230.23 238.22 247.98 167 283 217 226 246 239 3 3 3 3 3 3 39752 14973 108 14780 22973;22974;22975 29840;29841;29842 29841 3 NYTDNELEK Unmodified 1124.4986 0.49858282 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 42.831 42.831 2;3 0.0001251 12114 TMT1-1 132.01 114.68 207.26 352.73 213.14 181.85 232.3 302.51 196 348 225 182 240 290 2 2 2 2 2 2 42995 14974 387 14781 22976;22977 29843;29844 29843 2 NYVEELNR Unmodified 1035.4985 0.49852324 2456 Q96T51;Q96T51-2;Q96T51-3;Q8WXA3-5;Q8WXA3-4;Q7L099;Q7L099-2;Q7L099-4;Q8WXA3;Q7L099-3;Q8WXA3-3;Q8WXA3-1 RUFY1;RUFY2;RUFY3 RUN and FYVE domain-containing protein 1;RUN and FYVE domain-containing protein 2;Protein RUFY3 yes no 0 0 0 0 0 3 0 1 42.315 42.315 2 0.0010978 12226 TMT1-2 110.22 67.383 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14975 2456 14782 22978 29845 29845 1 NYVPPKGDK Unmodified 1016.5291 0.52909508 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 1 7 0 1 36.808 36.808 3 0.017976 8397 TMT1-6 66.056 26.011 170.64 339.74 246.72 202.58 244.38 227.55 162 334 256 203 250 220 1 1 1 1 1 1 27514 14976 900 14783 22979 29846 29846 1 NYVTPVNR Unmodified 961.49813 0.49812931 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 5 0 1 34.7 34.7 2 0.0059512 7934 TMT1-4 111.82 70.246 200.59 247.66 160.51 145.3 192.18 209.85 189 248 169 145 197 202 1 1 1 1 1 1 20967 14977 1464 14784 22980 29847 29847 1 NYYEQWGK Unmodified 1086.4771 0.47705951 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 6 0 1 50.034 50.034 2 0.0024241 14208 TMT1-5 136.8 101.35 480.33 1113.9 742.2 802.54 655.24 1289.3 457 1089 783 786 704 1227 2 2 2 2 2 2 88335 14978 848 14785 22981 29848;29849 29849 2 NYYIAAEEISWDYSEFVQR Unmodified 2382.0804 0.080441751 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 5 0 1 83.631 83.631 3 0.00019385 27140 TMT1-4 64.203 53.545 30.525 51.267 56.131 76.212 12.292 76.401 29 51 58 73 15 72 2 2 2 2 1 2 4879 14979 666 14786 22982 29850;29851 29850 2 NYYYDVVN Unmodified 1048.4502 0.45017606 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 3 0 1 57.771 57.771 2 0.021895 18281 TMT1-2 87.616 64.787 84.822 101.39 85.119 80.518 98.309 105.93 80 102 88 80 101 102 2 2 2 2 2 2 28612 14980 1115 14787 22983 29852;29853 29852 2 PAAPPAPGPGQLTLR Unmodified 1441.8041 0.80414773 2471 Q99536 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes yes 0 0 0 0 0 7 0 1 51.16 51.16 3 0.0015645 13980 TMT1-6 51.03 30.649 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14981 2471 14788 22984 29854 29854 1 PAAVAAENEEIGSHIK Unmodified 1634.8264 0.82639932 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4 0 2 47.075 47.075 3;4 3.4997E-20 13108 TMT1-3 161.09 152.04 979.58 1020.9 1490.6 806.66 1609.6 1363.3 926 1045 1472 847 1619 1322 5 5 5 5 5 5 144850 14982 3010 14789 22985;22986 29855;29856;29857;29858;29859 29857 5 PAFFAEK Unmodified 808.41194 0.41194006 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 8 0 1 54.746 54.746 2 0.010591 15554 TMT1-7 107.43 42.098 122.94 136.17 142.21 132.34 126.02 143.51 116 138 145 131 131 138 1 1 1 1 1 1 22781 14983 461 14790 22987 29860 29860 1 PAGGPKPPSGK Unmodified 991.54508 0.5450795 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 1 8 0 1 32.655 32.655 3 0.0029829 6767 TMT1-7 79.82 54.603 206.75 324.34 322.53 266.41 445.66 342.26 196 323 328 269 449 333 2 2 2 2 2 2 20670 14984 1232 14791 22988 29861;29862 29861 2 PAGPPGILALLDEECWFPK Unmodified 2109.0605 0.060498352 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 7.33 0.471 2 1 94.656 94.656 3;4 0.00023285 30788 TMT1-7 62.377 45.693 55.335 73.13 48.523 69.011 70.585 75.804 52 73 52 67 73 73 2 3 3 3 3 3 12464 14985 1019 14792 22989;22990;22991 29863;29864;29865 29865 3 PAGPQLFLPDPDPQR Unmodified 1646.8417 0.84165545 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 0 6 0 1 64.655 64.655 3 0.023836 19964 TMT1-5 45.864 31.511 38.245 43.782 27.254 29.271 42.598 60.612 36 44 29 29 44 58 1 1 1 1 1 1 5947.3 14986 2539 14793 22992 29866 29866 1 PALHIEDLPEKEK Unmodified 1517.809 0.80895834 1403 P61952 GNG11 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11 yes yes 0 0 0 0 1 5 0 1 48.839 48.839 4 0.0019431 13508 TMT1-4 72.089 53.358 169.06 275.62 206.42 173.69 222.9 282.53 160 273 214 174 230 271 1 1 1 1 1 1 24634 14987 1403 14794 22993 29867 29867 1 PALPAGTEDTAK Unmodified 1169.5928 0.59281755 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 4.5 0.5 1 1 44.281 44.281 2 5.2439E-07 12045 TMT1-3 121.6 66.622 169.87 124.61 198.85 109.86 269.69 162.86 160 131 196 116 268 160 2 2 2 2 2 2 20934 + 14988 506 14795 22994;22995 29868;29869 29868 2 PALPAGTEDTAKEDAANR Unmodified 1825.8806 0.88061973 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 4 0 1 41.863 41.863 3 6.9974E-36 11057 TMT1-3 186.72 159.31 313.74 309.65 387.53 296.42 503.71 408.83 296 317 389 301 508 397 2 2 2 2 2 2 51722 + 14989 506 14796 22996 29870;29871 29870 2 PANKQEDEVMR Unmodified 1315.619 0.61904908 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 1 4 0 1 32.67 32.67 3 0.0073493 7359 TMT1-3 71.219 61.373 223.18 289.63 296.07 176.48 255.3 279.47 211 291 298 182 261 269 2 2 2 2 2 2 25838 14990 130 14797 22997 29872;29873 29872 2 PAPGGAEQR Unmodified 881.43553 0.43552905 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 3 0 1 23.112 23.112 2 0.015371 4626 TMT1-2 81.548 30.941 23.11 28.305 59.382 34.997 43.141 37.145 22 29 58 36 44 36 1 1 1 1 1 1 3223.4 14991 333 14798 22998 29874 29874 1 PAPPKPEPR Unmodified 987.55016 0.55016488 72 O00479 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes yes 0 0 0 0 1 6 0 1 31.656 31.656 3 0.014849 6872 TMT1-5 68.893 22.187 411.81 165.84 257.11 152.17 392.77 299 386 186 255 160 392 291 1 1 1 1 1 1 7288 14992 72 14799 22999 29875 29875 1 PATFTVNTK Unmodified 977.5182 0.51819605 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8 0 1 46.956 46.956 2 0.0050696 12416 TMT1-7 98.048 46.702 61.639 80.432 31.799 45.276 48.934 67.894 58 80 36 44 51 65 1 1 1 1 1 1 6869.1 14993 831 14800 23000 29876 29876 1 PAYHSSLMDPDTK Unmodified 1460.6606 0.66057954 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 5 0 1 43.07 43.07 3 5.3574E-05 11236 TMT1-4 98.337 80.537 115.65 144.86 96.895 94.16 149.25 157.77 109 145 102 94 152 152 1 1 1 1 1 1 31568 14994 130 14801 23001 29877 29877 1 PCLHQPR Unmodified 906.4494 0.44940497 3078 yes yes 0 0 0 0 0 3 0 1 21.166 21.166 3 0.003529 3866 TMT1-2 65.263 19.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 14995 3078 14802 23002 29878 29878 1 PCYDVIMFDVDSK Unmodified 1587.6949 0.69491614 2190 Q8N6R0-2;Q8N6R0-1;Q8N6R0-3;Q8N6R0-4;Q8N6R0 METTL13 Methyltransferase-like protein 13 yes no 0 0 0 0 0 4 0 1 35.142 35.142 4 0.0040139 8421 TMT1-3 62.89 28.278 115.47 168.1 107.51 164.73 198.85 172.35 109 167 116 160 203 167 1 1 1 1 1 1 13567 14996 2190 14803 23003 29879 29879 1 PDPAAHLPFFYGSISR Unmodified 1773.8839 0.88385462 1114 P43403 ZAP70 Tyrosine-protein kinase ZAP-70 yes yes 0 0 0 0 0 8 0 1 63.948 63.948 3 0.0064281 19114 TMT1-7 52.862 24.579 53.79 103.75 68.829 82.189 61.089 90.999 51 102 73 80 65 87 1 1 1 1 1 1 11150 14997 1114 14804 23004 29880 29880 1 PEETKSAFTLDGWFK Unmodified 1754.8516 0.85155143 1939 Q4G176 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial yes yes 0 0 0 0 1 9 0 1 75.149 75.149 3 0.039414 21719 TMT1-8 40.237 6.9306 77.353 93.382 84.857 73.728 53.343 114.67 73 94 87 73 58 109 1 1 1 1 1 1 4113.9 14998 1939 14805 23005 29881 29881 1 PEFLEDPSVLTK Unmodified 1373.7078 0.70784731 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 5 0 1 68.83 68.83 3 1.0518E-05 21299 TMT1-4 109.72 78.993 192.89 254.12 187.38 190.1 224.05 287.82 182 254 196 188 232 276 2 2 2 2 2 2 27624 14999 1089;1090 14806 23006 29882;29883 29882 2 PELAVQK Unmodified 783.44905 0.44905385 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 6 0 1 44.888 44.888 2 0.032499 12098 TMT1-5 89.55 44.829 91.654 200.44 115.36 117.54 125.89 166.97 87 196 123 116 131 160 1 1 1 1 1 1 8545 15000 1251 14807 23007 29884 29884 1 PENVAPR Unmodified 781.40825 0.40825167 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 3 0 1 29.111 29.111 2 0.010218 7007 TMT1-2 109.01 43.76 108.07 121.43 128.72 116.46 141.15 150.54 102 123 131 116 145 145 1 1 1 1 1 1 13608 15001 1233 14808 23008 29885 29885 1 PEPAKSAPAPK Unmodified 1091.5975 0.597509 239;524 P62807;O60814;P57053;Q16778;P06899 HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 1 6 0 1 33.905 33.905 3 0.00043239 7841 TMT1-5 99.215 60.85 292.56 373.42 286.6 341.37 583.76 515.28 276 374 301 338 590 499 2 2 2 2 2 2 22197 15002 239;524 14809 23009 29886;29887 29887 2 PFGVALLFGGVDEK Unmodified 1447.7711 0.77111627 924 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 0 0 0 9 0 2 83.685 83.685 2;3 9.4269E-20 24970 TMT1-8 169.58 131.01 91.955 139.75 116.27 106.05 152.85 158.74 87 139 120 106 156 153 3 3 3 3 3 3 16309 15003 924 14810 23010;23011 29888;29889;29890 29890 3 PFLDIQK Unmodified 859.48035 0.48035398 211 O43920 NDUFS5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 yes yes 0 0 0 0 0 8 0 1 60.767 60.767 2 0.0079653 17813 TMT1-7 121.52 35.434 115.34 182.85 117.36 93.762 105.56 120.64 109 181 123 94 109 116 1 1 1 1 1 1 13930 15004 211 14811 23012 29891 29891 1 PFLELDTNLPANR Unmodified 1498.778 0.77799256 948 P30046;P30046-2;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 0 6 0 1 66.896 66.896 2 6.2871E-13 20814 TMT1-5 122.77 82.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15005 948 14812 23013 29892 29892 1 PGDGEFVEVISLPK Unmodified 1485.7715 0.7715102 2895 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 0 5 0 1 71.215 71.215 3 0.0033366 22319 TMT1-4 46.746 29.721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15006 2895 14813 23014 29893 29893 1 PGGDTIFGK Unmodified 890.44978 0.44978213 1203 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 0 7 0 1 52.425 52.425 2 0.015371 14486 TMT1-6 81.548 42.526 107.88 129.55 152.8 75.036 175.29 95.202 102 131 152 80 174 94 1 1 1 1 1 1 10024 15007 1203 14814 23015 29894 29894 1 PGGLLLGDVAPNFEANTTVGR Unmodified 2097.0855 0.085467549 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 6.5 0.5 3 3 72.9 72.9 2;3;4 2.0709E-31 22521 TMT1-6 148.85 126.41 677.46 844.68 839.85 626.63 807.43 1052.6 640 850 852 633 834 1009 6 6 6 6 6 6 204820 15008 945 14815 23016;23017;23018;23019;23020;23021 29895;29896;29897;29898;29899;29900;29901;29902 29900 8 PGSTGTWNPGSSER Unmodified 1431.6379 0.63787026 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5 0 1 38.641 38.641 2 4.6982E-14 9498 TMT1-4 135.26 120.29 68.911 71.699 79.35 57.485 62.738 76.028 65 73 80 58 65 73 1 1 1 1 1 1 12479 15009 437 14816 23022 29903 29903 1 PHEELPSLQRPR Unmodified 1457.7739 0.77391024 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 1 5 0 1 34.812 34.812 4 0.015328 7969 TMT1-4 55.754 33.221 85.004 54.402 94.43 80.484 70.607 59.813 80 58 94 80 73 58 1 1 1 1 1 1 5091.9 15010 1723 14817 23023 29904 29904 1 PHPWFFGK Unmodified 1014.5076 0.50757178 1464 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 0 0 0 9 0 1 55.573 55.573 3 0.006581 13919 TMT1-8 67.032 38.289 362.48 469.87 536.02 360.89 441.12 439.4 343 473 538 367 452 424 2 2 2 2 2 2 33693 15011 1464 14818 23024 29905;29906 29905 2 PHSVSLNDTETR Unmodified 1354.6477 0.64770667 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 0 3 0 1 31.395 31.395 3 0.0060329 7896 TMT1-2 45.357 21.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15012 2813 14819 23025 29907 29907 1 PIIHFGSDYEDR Unmodified 1447.6732 0.67319314 464 P61768;P04156 PRNP Major prion protein yes no 0 0 0 0 0 5 0 1 49.339 49.339 3 1.4293E-05 13742 TMT1-4 86.911 74.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15013 464 14820 23026 29908 29908 1 PKPINVR Unmodified 822.50757 0.50757178 720;1015 P15311;P35241;P35241-5;P35241-3 EZR;RDX Ezrin;Radixin no no 0 0 0 0 1 9 0 1 33.59 33.59 3 0.019187 5982 TMT1-8 65.803 30.602 191.79 275.71 173.33 112.4 215.52 244.36 181 274 181 116 219 235 1 1 1 1 1 1 9707.8 15014 720;1015 14821 23027 29909 29909 1 PLAGGEPVSLGSLR Unmodified 1351.746 0.74596415 528 P07203;P07203-2 GPX1 Glutathione peroxidase 1 yes no 0 0 0 0 0 6 0 1 58.459 58.459 2 0.004844 17536 TMT1-5 72.29 39.062 61.427 87.398 61.508 73.381 145.77 73.658 58 87 65 73 145 73 1 1 1 1 1 1 23481 15015 528 14822 23028 29910 29910 1 PLEGTSFIVDQANRPHCVPDYHK Unmodified 2679.2864 0.28636898 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 1 6.5 0.5 1 1 51.936 51.936 5 2.2579E-23 14927 TMT1-5 125.73 100.06 729.81 914.02 999.59 584.95 889.92 1142.9 690 921 1002 605 914 1096 3 3 3 3 3 3 157280 15016 1881 14823 23029;23030 29911;29912;29913 29912 3 PLENLEEEGLPK Unmodified 1366.698 0.6980109 1810 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 2.5 0.5 1 1 63.438 63.438 3 0.00029305 20513 TMT1-2 89.629 53.67 38.151 43.521 43.203 35.958 43.353 29.677 36 44 44 36 44 29 1 1 1 1 1 1 5482.2 15017 1810 14824 23031;23032 29914;29915 29915 2 PLFPHVLCHNCAVEFNFGQK Unmodified 2413.146 0.14597609 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 1 62.36 62.36 4 6.6098E-25 16637 TMT1-8 130.29 102.97 222.95 375.32 262.59 278.24 413.25 326.13 211 371 276 276 418 317 2 2 2 2 2 2 26866 15018 1545 14825 23033 29916;29917 29916 2 PLHISTFINELDSGFR Unmodified 1844.9421 0.94209778 1865 Q15631 TSN Translin yes yes 0 0 0 0 0 8.5 0.5 1 1 74.791 74.791 3 2.3732E-18 23421 TMT1-7 148.03 111.01 92.291 92.12 100.09 71.937 100.3 89.88 87 94 101 73 102 87 2 2 2 2 2 2 20223 15019 1865 14826 23034;23035 29918;29919 29918 2 PLISVYSEK Unmodified 1034.5648 0.56481189 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 7.5 0.5 1 1 57.216 57.216 2 0.00081671 16520 TMT1-7 128.36 73.956 223.2 286.45 294.91 206.92 325.76 319.03 211 288 298 211 331 308 2 2 2 2 2 2 62884 15020 1041 14827 23036;23037 29920;29921 29921 2 PLLDELHGFLQPQR Unmodified 1661.8889 0.88893999 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 8 0 1 73.916 73.916 3 0.0055092 23080 TMT1-7 59.227 44.231 92.373 93.427 85.202 64.227 92.536 82.639 87 95 87 65 94 80 2 2 2 2 2 2 4725.6 15021 2779 14828 23038 29922;29923 29923 2 PLLLALHGPSGVGK Unmodified 1357.8082 0.80817048 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 9 0 1 61.018 61.018 3 2.565E-05 16090 TMT1-8 90.926 58.705 61.359 72.098 85.908 80.618 90.463 121.07 58 73 87 80 94 116 1 1 1 1 1 1 8039.3 15022 2779 14829 23039 29924 29924 1 PLLQAAK Unmodified 739.45922 0.4592246 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 9 0 1 47.753 47.753 2 0.0091428 10931 TMT1-8 145.87 51.719 201.29 205.54 258.66 160.41 356.46 248.87 190 210 258 167 356 243 1 1 1 1 1 1 27896 15023 3010 14830 23040 29925 29925 1 PLPVEYLIIDITTTFPK Unmodified 1959.0969 0.096867083 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 9 0 1 104.59 104.59 3 0.0021446 32662 TMT1-8 53.981 37.452 0 23.31 5.8501 7.3023 0 0 0 22 7 7 0 0 0 1 1 1 0 0 1069.2 15024 2238 14831 23041 29926 29926 1 PLYSVTVK Unmodified 905.52222 0.52221879 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 0 9 0 1 53.255 53.255 2 0.0071508 13092 TMT1-8 105.25 46.044 115.69 106.12 122.65 78.289 97.883 151.78 109 109 123 80 102 145 1 1 1 1 1 1 11110 15025 1298 14832 23042 29927 29927 1 PMFIVNTNVPR Unmodified 1286.6805 0.68052712 698 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 0 0 9 0 1 59.666 59.666 2 8.7065E-13 15629 TMT1-8 168.74 114.64 374.1 358.1 301.2 316.32 358.4 593.13 352 365 313 312 376 566 2 2 2 2 2 2 46093 15026 698 14833 23043 29928;29929 29929 2 PMIHELLTEGR Unmodified 1294.6704 0.67035637 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 7 0 1 53.253 53.253 3 0.0011985 14837 TMT1-6 84.658 69.087 46.624 57.734 49.916 35.179 63.507 83.468 44 58 51 36 65 80 1 1 1 1 1 1 4603.5 15027 1803 14834 23044 29930 29930 1 PMWVVLLEDGIEFYK Unmodified 1837.9324 0.93244429 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 8 0 1 100.67 100.67 3 1.7259E-06 32816 TMT1-7 102.73 81.494 19.01 25.895 29.146 13.074 26.108 14.179 18 26 29 14 26 14 2 2 2 2 2 2 1978.2 15028 567 14835 23045 29931;29932 29931 2 PMWVVLLEDGIEFYKK Unmodified 1966.0274 0.02740731 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 1 9 0 1 92.389 92.389 4 0.00010448 28369 TMT1-8 67.275 37.124 30.711 28.041 44.506 28.385 35.069 37.375 29 29 44 29 36 36 1 1 1 1 1 1 3114.3 15029 567 14836 23046 29933 29933 1 PNNPDWGTFEEVSGNVSPGTR Unmodified 2259.0192 0.019238477 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 4.5 0.5 1 1 61.678 61.678 3 3.5742E-10 18882 TMT1-3 91.964 80.278 92.029 138.88 104.53 103.59 88.328 182.96 87 138 109 102 95 174 2 2 2 2 2 2 66916 15030 437 14837 23047;23048 29934;29935 29934 2 PNPSSTSSPYPLPEEIR Unmodified 1869.9109 0.91085723 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 4 0 1 54.478 54.478 3 3.9634E-19 16043 TMT1-3 137.52 118.2 53.768 87.498 86.431 48.986 85.394 97.767 51 87 87 51 87 94 1 1 1 1 1 1 18233 15031 289 14838 23049 29936 29936 1 PNSEPASLLELFNSIATQGELVR Unmodified 2484.286 0.28601785 860 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 0 0 0 0 0 8 0 1 95.766 95.766 3 5.8343E-29 31197 TMT1-7 131.56 126.68 14.677 51.608 36.055 18.153 16.656 46.429 14 50 37 18 18 44 2 3 3 2 2 3 8782.3 15032 860 14839 23050 29937;29938;29939 29938 3 PPYTVVYFPVR Unmodified 1336.718 0.71795849 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 9 0 2 66.007 66.007 2;3 5.568E-06 17966 TMT1-8 116.3 92.985 373.94 494.9 392.83 479.95 491.83 570.13 353 495 412 469 510 548 3 3 3 3 3 3 67711 15033 583 14840 23051;23052 29940;29941;29942 29940 3 PQPPPDPLLLQR Unmodified 1369.7718 0.77178497 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 6 0.632 1 3 1 57.341 57.341 2;3 3.2052E-18 17016 TMT1-5 180.81 117.63 677.29 765.22 756.47 516.76 985.56 855.59 639 774 766 531 993 829 7 7 7 7 7 7 134730 15034 2112 14841 23053;23054;23055;23056;23057 29943;29944;29945;29946;29947;29948;29949;29950 29948 8 PQYQTWEEFSR Unmodified 1469.6575 0.65754307 1182 P49458;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 0 5 0 1 55.822 55.822 2 0.00018887 16255 TMT1-4 108.9 80.207 30.308 65.774 80.269 49.206 93.226 82.62 29 65 80 51 94 80 1 1 1 1 1 1 12890 15035 1182 14842 23058 29951 29951 1 PRPDPSPEIEGDLQPATHGSR Unmodified 2255.0931 0.093072122 1258 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes yes 0 0 0 0 1 3 0 1 40.253 40.253 4 2.2657E-07 11425 TMT1-2 85.397 73.53 37.974 81.882 40.517 44.609 56.807 52.745 36 80 44 44 58 51 1 1 1 1 1 1 7235.2 15036 1258 14843 23059 29952 29952 1 PSGKPLPK Unmodified 822.49634 0.49633839 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 1 9 0 1 36.779 36.779 3 0.017964 6981 TMT1-8 57.59 0.86026 72.836 121.11 99.203 79.172 125.23 115.82 69 120 102 80 127 112 1 1 1 1 1 1 3929.1 15037 1028 14844 23060 29953 29953 1 PSLKIMIQSMIAITK 2 Oxidation (M) 1704.9518 0.95179953 825 P21001 yes yes 0 0 2 0 1 9 0 1 48.907 48.907 4 0.01361 11423 TMT1-8 43.798 10.492 177.88 360.06 275.43 185.69 353.68 235.09 169 354 283 191 354 230 1 1 1 1 1 1 105130 15038 825 14845 23061 29954 29954 153;154 1 PSPFIGNLTFFR Unmodified 1394.7347 0.73467118 876 P24557;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 9 0 1 75.938 75.938 2 8.1903E-09 22005 TMT1-8 129.34 90.924 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15039 876 14846 23062 29955 29955 1 PSQVLDSPFPTGSAFGFSLR Unmodified 2109.0531 0.053104788 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 9 0 1 78.909 78.909 3 0.00020766 23117 TMT1-8 58.035 41.672 46.923 34.821 19.081 53.816 41.982 45.706 44 36 22 51 44 44 1 1 1 1 1 1 7371.4 15040 565 14847 23063 29956 29956 1 PSSLSDK Unmodified 732.36538 0.3653838 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5 0 1 36.905 36.905 2 0.00027722 8841 TMT1-4 153.73 75.111 504 496.91 893.44 446.21 815.77 472.41 477 513 874 471 815 465 1 1 1 1 1 1 46019 15041 2112 14848 23064 29957 29957 1 PSYQEEAVTK Unmodified 1150.5506 0.55061839 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 3 0 1 41.11 41.11 2 0.0024611 11768 TMT1-2 99.283 51.68 30.762 28.183 35.818 28.909 34.751 45.912 29 29 36 29 36 44 1 1 1 1 1 1 5183.4 15042 105 14849 23065 29958 29958 1 PVAVALDTK Unmodified 912.52803 0.52803245 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 6 0 1 52.437 52.437 2 0.000953 15037 TMT1-5 126.41 73.245 114.84 197.66 187.77 96.407 206.72 187.05 109 196 189 102 208 181 1 1 1 1 1 1 22269 15043 706;707 14850 23066 29959 29959 1 PVCAVLLLFPITEK Unmodified 1598.9106 0.91058664 721 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 0 9 0 1 91.008 91.008 3 4.5894E-05 27788 TMT1-8 85.554 58.456 23.289 28.802 28.902 14.144 28.101 46.102 22 29 29 15 29 44 1 1 1 1 1 1 4900.7 15044 721 14851 23067 29960 29960 1 PVIVAYK Unmodified 788.47963 0.47962569 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 9 0 1 51.572 51.572 2 0.033411 12413 TMT1-8 79.027 39.485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15045 478 14852 23068 29961 29961 1 PVIVEPLEQLDDEDGLPEK Unmodified 2134.0681 0.06814573 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 3.33 0.471 2 1 75.316 75.316 3;4 9.7986E-10 25164 TMT1-2 96.487 80.86 138.34 195.74 208.1 174.3 184.78 142.9 131 196 211 174 189 139 5 5 5 5 5 5 23390 15046 857 14853 23069;23070;23071 29962;29963;29964;29965;29966 29964 5 PYILAEELR Unmodified 1102.6023 0.60226003 1022 P35609-2;P35609 ACTN2 Alpha-actinin-2 yes no 0 0 0 0 0 4 0 1 28.808 28.808 3 0.0359 5897 TMT1-3 49.536 3.5841 92.066 100.13 131.12 93.227 90.396 106.15 87 102 131 94 94 102 1 1 1 1 1 1 5728.8 15047 1022 14854 23072 29967 29967 1 PYQYPALTPEQK Unmodified 1433.7191 0.7190807 459 P04075 ALDOA Fructose-bisphosphate aldolase A yes yes 0 0 0 0 0 4.5 2.06 1 1 2 53.678 53.678 2;3 6.4189E-11 15525 TMT1-5 160.16 123.15 1382.5 1741.6 1687.4 1152.4 1491.5 2056.4 1306 1751 1710 1172 1544 1969 4 4 4 4 4 4 366630 15048 459 14855 23073;23074;23075;23076 29968;29969;29970;29971 29971 4 QAAAHTDHLR Unmodified 1118.5581 0.5581038 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 3 0 1 18.12 18.12 3 0.018827 3221 TMT1-2 56.043 38.57 2.0927 1.8635 7.3798 1.6132 7.0718 5.1282 2 2 7 2 7 5 1 1 1 1 1 1 586.05 15049 1913 14856 23077 29972 29972 1 QAAASATQTIAAAQHAASTPK Unmodified 1994.0181 0.018116265 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7 2.77 1 1 2 2 47.122 47.122 3;4 8.1711E-41 10553 TMT1-8 156.74 124.01 1629.1 2104.8 1947.6 1474.2 2211.4 2043.3 1539 2112 1985 1493 2246 1976 9 9 9 9 9 9 371400 15050 3010 14857 23078;23079;23080;23081;23082;23083 29973;29974;29975;29976;29977;29978;29979;29980;29981 29981 9 QAAENIK Unmodified 772.40792 0.40791731 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 4 0 1 32.996 32.996 2 0.024247 7544 TMT1-3 94.302 29.265 100.22 61.472 55.637 65.67 109.49 43.78 94 65 58 65 109 44 1 1 1 1 1 1 5370 15051 291 14858 23084 29982 29982 1 QAAPCVLFFDELDSIAK Unmodified 1922.9448 0.94479989 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 6 0 1 87.604 87.604 3 4.85E-15 28910 TMT1-5 129.05 103.55 107.88 160.85 126.32 117.4 156.81 150.1 102 160 131 117 160 145 2 2 2 2 2 2 24315 15052 1311 14859 23085 29983;29984 29984 2 QAASSLQQASLK Unmodified 1230.6568 0.65681479 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 43.529 43.529 3 7.5554E-06 10975 TMT1-6 111.79 57.534 191.77 232.47 213.98 205.23 207.28 238.2 181 234 220 203 215 229 1 1 1 1 1 1 19451 15053 1058 14860 23086 29985 29985 1 QACVLMIK Unmodified 961.50889 0.50889369 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 8 0 1 53.896 53.896 3 0.023318 15178 TMT1-7 60.436 16.301 54.188 57.369 41.217 60.055 46.899 107.39 51 58 44 58 51 102 1 1 1 1 1 1 9981.6 15054 1019 14861 23087 29986 29986 1 QADEIEK Unmodified 831.39741 0.39741221 1351 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 2 0 1 36.357 36.357 2 0.02664 9511 TMT1-1 92.439 21.527 115.31 167.67 133.87 107.76 180.56 111.04 109 167 138 109 181 109 1 1 1 1 1 1 21535 15055 1351 14862 23088 29987 29987 1 QAEEIGEK Unmodified 902.43453 0.434526 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 36.21 36.21 2 0.0018341 9462 TMT1-1 83.948 33.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15056 1833 14863 23089 29988 29988 1 QAEILQESR Unmodified 1072.5513 0.55128709 265 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 0 2.5 0.5 1 1 37.955 37.955 2 0.0084394 10237 TMT1-1 61.65 17.842 77.194 77.827 124.88 70.745 85.163 75.388 73 80 123 73 87 73 1 1 1 1 1 1 9621 15057 265 14864 23090;23091 29989;29990 29989 2 QAEPELDLR Unmodified 1069.5404 0.54038805 819 P20810-8;P20810-2;P20810;P20810-5;P20810-10;P20810-6;P20810-3;P20810-4;P20810-9;P20810-7 CAST Calpastatin yes no 0 0 0 0 0 2 0 1 45.265 45.265 2 0.010391 13033 TMT1-1 88.392 49.616 46.45 96.106 46.546 59.156 77.854 90.52 44 94 51 58 80 87 1 1 1 1 1 1 8003.8 15058 819 14865 23092 29991 29991 1 QAESASEAAK Unmodified 990.4618 0.46180338 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 2 0 1 28.78 28.78 2 0.00022512 6525 TMT1-1 91.549 45.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15059 1244 14866 23093 29992 29992 1 QAFAKPK Unmodified 788.45447 0.45447358 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 1 9 0 1 36.559 36.559 3 0.022307 6895 TMT1-8 60.76 29.47 153.54 222.18 156.02 140 256.11 213.35 145 221 163 141 258 207 1 1 1 1 1 1 12972 15060 2013 14867 23094 29993 29993 1 QAFDDAIAELDTLNEDSYK Unmodified 2156.975 0.97497363 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 4 0 1 83.537 83.537 3 0.0055054 27383 TMT1-3 48.656 30.36 7.2989 15.086 22.862 0 21.679 38.823 7 15 22 0 22 37 1 1 1 0 1 1 8437.7 15061 1588 14868 23095 29994 29994 1 QAFNATAVVR Unmodified 1075.5774 0.57744226 1746 Q14012;Q8IU85-2;Q8IU85 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D yes no 0 0 0 0 0 7 0 1 43.673 43.673 2 0.00051541 10987 TMT1-6 114.97 79.35 46.53 88.772 39.388 59.705 71.306 67.255 44 87 44 58 73 65 1 1 1 1 1 1 7369.5 15062 1746 14869 23096 29995 29995 1 QAGEVTYADAHK Unmodified 1288.6048 0.60477922 1687;1617 Q08170;Q13247;Q13247-3 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 no no 0 0 0 0 0 4 0 1 34.517 34.517 3 2.3336E-08 8139 TMT1-3 128.35 88.438 122.91 151.19 134.45 116.11 141.68 135.6 116 152 138 116 145 131 1 1 1 1 1 1 13770 15063 1617;1687 14870 23097 29996 29996 1 QAHVDVK Unmodified 795.4239 0.42390173 2831 Q9P2R7-2;Q9P2R7 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 5 0 1 28.779 28.779 3 0.0059084 5621 TMT1-4 55.676 20.852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15064 2831 14871 23098 29997 29997 1 QAIPLDENEGIYVQDVK Unmodified 1929.9684 0.96837211 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 4 0 1 62.891 62.891 3 9.9705E-07 19345 TMT1-3 91.317 64.288 77.487 93.753 62.074 50.296 92.92 90.091 73 94 65 51 94 87 1 1 1 1 1 1 14263 15065 1796 14872 23099 29998 29998 1 QALAQISLPR Unmodified 1095.64 0.64004252 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 8 0 1 53.604 53.604 3 9.4692E-05 15018 TMT1-7 115.78 78.761 46.396 88.4 62.198 58.242 76.833 121.46 44 87 65 58 80 116 1 1 1 1 1 1 14627 15066 489 14873 23100 29999 29999 1 QALEGLGDLK Unmodified 1042.5659 0.56587452 664 P12081-4;P12081;P12081-3;P12081-2;P49590-2;P49590 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 5 0 1 57.591 57.591 3 0.0034296 16981 TMT1-4 77.062 37.438 53.866 56.471 96.222 40.99 72.679 52.292 51 58 94 44 73 51 1 1 1 1 1 1 5318.3 15067 664 14874 23101 30000 30000 1 QALHSLELHYQAFLR Unmodified 1824.9635 0.96350192 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 57.015 57.015 4 0.00059186 16422 TMT1-7 71.344 50.043 68.998 103.24 38.055 67.6 62.566 67.505 65 102 44 65 65 65 1 1 1 1 1 1 8268.7 15068 1833 14875 23102 30001 30001 1 QALNLPDVFGLVVLPLELK Unmodified 2077.2187 0.21871355 3002 Q9Y3I1-3;Q9Y3I1-2;Q9Y3I1 FBXO7 F-box only protein 7 yes no 0 0 0 0 0 9 0 1 104.02 104.02 3 0.0021769 32438 TMT1-8 50.425 30.043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15069 3002 14876 23103 30002 30002 1 QALNTDYLDSDYQR Unmodified 1700.7642 0.76419299 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 3 0 1 52.093 52.093 2 2.0074E-65 16085 TMT1-2 237.08 213.76 54.217 49.894 42.731 36.154 34.418 45.922 51 51 44 36 36 44 1 1 1 1 1 1 15618 15070 333 14877 23104 30003 30003 1 QALSEVTAALR Unmodified 1157.6404 0.64043645 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 6 0 1 57.011 57.011 2 0.00082173 16907 TMT1-5 101.48 47.045 92.33 84.673 99.87 111.08 112.1 120.46 87 87 102 109 116 116 1 1 1 1 1 1 15138 15071 1724 14878 23105 30004 30004 1 QAQQERDELADEIANSSGK Unmodified 2087.972 0.97195393 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2.4 0.49 3 2 49.06 49.06 3;4;5 1.4231E-60 14759 TMT1-2 206.59 182.63 1284.6 1924.6 1765.9 1632.4 2046 1713.3 1216 1918 1812 1625 2084 1662 7 7 7 7 7 7 495720 15072 1019 14879 23106;23107;23108;23109;23110 30005;30006;30007;30008;30009;30010;30011 30009 7 QASEGPLK Unmodified 828.43413 0.43413207 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 4.5 0.5 1 1 35.328 35.328 2;3 0.0051664 8451 TMT1-3 119.86 68.176 1257 1718.8 1334.6 1053.8 1862.6 1432.9 1187 1716 1378 1069 1874 1394 4 4 4 4 4 4 219160 15073 472 14880 23111;23112 30012;30013;30014;30015 30012 4 QASPNIVIALAGNK Unmodified 1394.7882 0.78816332 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 8 0 2 63.184 63.184 2;3 9.9785E-17 18783 TMT1-7 151.78 99.378 169.74 185.78 168.07 183.94 206.09 179.6 160 188 174 181 211 174 2 2 2 2 2 2 38510 15074 1236 14881 23113;23114 30016;30017 30016 2 QASQHALRPAP Unmodified 1174.6207 0.62070406 2066 Q70J99 UNC13D Protein unc-13 homolog D yes yes 0 0 0 0 1 5 0 1 25.533 25.533 3 0.027686 4394 TMT1-4 56.359 28.931 15.67 21.461 53.245 12.81 21.896 15.365 15 22 51 15 22 15 1 1 1 1 1 1 2057.8 15075 2066 14882 23115 30018 30018 1 QATENAKEEVR Unmodified 1273.6262 0.62624295 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 3 0 1 29.04 29.04 3 0.005065 6962 TMT1-2 75.5 42.933 92.24 91.977 108.8 70.708 138.05 88.803 87 94 109 73 138 87 1 1 1 1 1 1 7206.5 15076 904 14883 23116 30019 30019 1 QATINIGTIGHVAHGK Unmodified 1615.8794 0.87943794 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 9 0 1 43.777 43.777 4 0.037572 9425 TMT1-8 31.089 4.5478 30.462 82.394 40.182 52.286 56.454 52.755 29 80 44 51 58 51 1 1 1 1 1 1 2301.2 15077 1077 14884 23117 30020 30020 1 QATTIIADNIIFLSDQTK Unmodified 1991.0575 0.057521464 1587 Q04837 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 80.558 80.558 3 2.9985E-05 26137 TMT1-5 77.969 53.176 54.217 81.193 16.247 54.143 33.591 45.945 51 80 22 51 36 44 1 1 1 1 1 1 6345.9 15078 1587 14885 23118 30021 30021 1 QATVGDINTERPGMLDFTGK Unmodified 2149.0474 0.047367483 526 P07108;P07108-3;P07108-2;P07108-4;P07108-5 DBI Acyl-CoA-binding protein yes no 0 0 0 0 1 6 0 1 58.213 58.213 3 5.857E-05 17409 TMT1-5 68.42 51.703 54.076 80.802 40.203 51.29 109.39 66.169 51 80 44 51 109 65 1 1 1 1 1 1 12440 15079 526 14886 23119 30022 30022 1 QAVDVSPLR Unmodified 983.53999 0.53999412 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 5 0 1 42.811 42.811 2 0.042868 11156 TMT1-4 68.847 46.066 68.724 102.48 84.802 63.688 122.41 96.711 65 102 87 65 123 94 1 1 1 1 1 1 7846.7 15080 1136 14887 23120 30023 30023 1 QAVEQQIQSHR Unmodified 1322.6691 0.66911081 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 4 0 1 30.632 30.632 3 0.025758 6589 TMT1-3 51.135 41.601 61.611 56.609 56.762 51.327 54.923 98.637 58 58 58 51 58 94 1 1 1 1 1 1 9759.8 15081 998 14888 23121 30024 30024 1 QAVQILDELAEK Unmodified 1355.7296 0.72964538 2501 Q99961;Q99961-3;Q99961-2 SH3GL1 Endophilin-A2 yes no 0 0 0 0 0 5 0 1 73.157 73.157 3 0.0023136 23096 TMT1-4 72.496 66.776 54.12 42.07 65.624 42.845 71.034 67.263 51 44 65 44 72 65 1 1 1 1 1 1 5609.9 15082 2501 14889 23122 30025 30025 1 QAWFIENEEQEYVQTVK Unmodified 2140.0113 0.011299553 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 5 0 1 69.402 69.402 3 2.1065E-10 21579 TMT1-4 114.59 91.933 76.998 132.33 111.55 126.54 124.43 167.01 73 131 116 124 130 160 2 2 2 2 2 2 30309 15083 461 14890 23123 30026;30027 30026 2 QAYTQFGGK Unmodified 998.48214 0.48214489 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 7 0 1 43.229 43.229 3 0.0097879 10817 TMT1-6 66.27 35.7 84.572 108.25 121.29 109.36 135.72 104.86 80 109 123 109 138 102 1 1 1 1 1 1 5013.2 15084 893 14891 23124 30028 30028 1 QCNAAIHK Unmodified 940.45488 0.45488428 1596;1585 Q05655;Q05655-2;Q04759;Q04759-2;Q04759-3 PRKCD;PRKCQ Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit;Protein kinase C theta type no no 0 0 0 0 0 6 0 1 27.985 27.985 3 0.0038506 5469 TMT1-5 57.047 31.311 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15085 1596;1585 14892 23125 30029 30029 1 QCVAEGSPQR Unmodified 1130.5139 0.51385572 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 3 0 1 25.135 25.135 2 0.041184 5459 TMT1-2 66.056 57.569 7.3123 22.678 14.177 14.707 44.843 14.71 7 22 15 15 44 15 1 1 1 1 1 1 1369.6 15086 704 14893 23126 30030 30030 1 QDAQDLYEAGEK Unmodified 1365.6048 0.6048388 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 2 0 1 46.992 46.992 3 0.00019436 13705 TMT1-1 92.039 81.571 46.406 95.982 54.143 58.811 72.116 44.846 44 94 58 58 73 44 1 1 1 1 1 1 5853.3 15087 598 14894 23127 30031 30031 1 QDEHGYISR Unmodified 1103.4996 0.49958587 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 3.33 1.25 1 1 1 25.662 25.662 3 0.0030555 5575 TMT1-2 81.017 56.179 116.7 129.62 113.15 114 146.86 139.72 110 131 117 113 150 135 3 3 3 3 3 3 16061 15088 476 14895 23128;23129;23130 30032;30033;30034 30033 3 QDEQLQK Unmodified 887.43486 0.43486035 596 P09496-2;P09496-4;P09496-3;P09496;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 0 3 0 1 34.184 34.184 2 0.01201 9018 TMT1-2 103.83 31.695 123.53 75.229 93.363 72.027 116.82 35.042 116 80 94 73 116 36 1 1 1 1 1 1 7103.2 15089 596 14896 23131 30035 30035 1 QDFVQHFSQIVR Unmodified 1502.763 0.7630112 702 P14324-2;P14324 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 0 8 0 1 56.404 56.404 3 0.0035386 16120 TMT1-7 67.234 46.853 215.87 265.87 282.44 199.6 289.29 355.25 204 268 285 203 297 341 2 2 2 2 2 2 16102 15090 702 14897 23132 30036;30037 30036 2 QDGSVDFGR Unmodified 979.43592 0.43592298 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 0 2 0.816 1 1 1 37.18 37.18 2 1.0521E-05 10122 TMT1-2 157.66 73.566 1113.8 1437.2 1126.4 901.48 1383.4 1245.1 1051 1439 1163 910 1403 1205 5 5 5 5 5 5 257150 15091 438 14898 23133;23134;23135 30038;30039;30040;30041;30042 30041 5 QDGSVDFGRK Unmodified 1107.5309 0.530886 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 1 5 0 1 36.224 36.224 3 0.037391 8523 TMT1-4 53.252 23.904 308.36 393.08 319.8 199.24 364.39 392.55 291 394 327 206 370 378 1 1 1 1 1 1 26521 15092 438 14899 23136 30043 30043 1 QDGYDSLQR Unmodified 1080.4836 0.48360145 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 2 0 1 34.883 34.883 2 0.030316 8948 TMT1-1 73.887 41.745 23.113 67.168 25.918 29.484 35.531 22.438 22 65 29 29 36 22 1 1 1 1 1 1 3131.1 15093 2135 14900 23137 30044 30044 1 QDLEAEVSQLTGEVAK Unmodified 1715.8578 0.85775902 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 3.5 0.5 2 2 73.454 73.454 3;4 1.6799E-11 23454 TMT1-3 119.04 110.23 208.2 304.81 275.74 274.21 295.52 317.76 197 304 284 271 305 306 5 5 5 5 5 5 35273 15094 228 14901 23138;23139;23140;23141 30045;30046;30047;30048;30049 30049 5 QDLGSPEGIAVDHLGR Unmodified 1662.8325 0.83254733 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 3 0 1 49.899 49.899 3 2.8414E-06 15191 TMT1-2 91.401 79.632 146.31 165.2 156.99 98.776 178.32 218.77 138 167 159 102 182 210 2 2 2 2 2 2 15113 15095 704 14902 23142 30050;30051 30050 2 QDLPNAMNAAEITDK Unmodified 1629.7668 0.76683553 1519 P84077;P61204;P61204-2 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 0 0 0 3.5 0.5 1 1 58.048 58.048 3 1.1782E-05 17338 TMT1-3 92.211 68.379 291.04 408.94 332.09 244.06 325.44 370.21 275 408 341 247 334 356 3 3 3 3 3 3 65728 15096 1519 14903 23143;23144 30052;30053;30054 30053 3 QDVDNASLAR Unmodified 1087.5258 0.52580062 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2.33 0.471 2 1 33.798 33.798 2;3 0.00017982 8502 TMT1-1 130.98 70.01 375.77 578.06 375.29 324.06 525.59 465.77 355 573 394 326 532 451 4 4 4 4 4 4 117840 15097 575 14904 23145;23146;23147 30055;30056;30057;30058 30055 4 QDVIITALDNVEAR Unmodified 1555.8206 0.82058566 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 4 0 1 71.523 71.523 3 0.0039967 22685 TMT1-3 62.055 44.844 30.889 28.538 14.089 6.1325 36.092 37.346 29 29 15 7 36 36 1 1 1 1 1 1 4319.5 15098 2 14905 23148 30059 30059 1 QDWSDHAIWWEQK Unmodified 1727.7692 0.76921879 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 6 0 1 61.592 61.592 3 1.816E-11 18753 TMT1-5 142.38 119.39 60.783 116.91 144.74 108.41 111.41 143.93 58 116 145 109 116 138 1 1 1 1 1 1 13863 15099 2112 14906 23149 30060 30060 1 QEAEQLK Unmodified 844.42905 0.42904669 1453 P62873;P62873-2;P16520-2;P16520 GNB1;GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 yes no 0 0 0 0 0 3 0 1 35.439 35.439 2 0.018301 9478 TMT1-2 98.933 43.217 53.932 64.211 78.498 88.382 107.94 58.748 51 65 80 87 109 58 1 1 1 1 1 1 10364 15100 1453 14907 23150 30061 30061 1 QEAEQLR Unmodified 872.43519 0.4351947 1454;2674 P62879;Q9BRK4;Q9HAV0 GNB2;LZTS2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Leucine zipper putative tumor suppressor 2;Guanine nucleotide-binding protein subunit beta-4 no no 0 0 0 0 0 2 0 1 27.739 27.739 2 0.032167 6101 TMT1-1 89.698 13.145 46.535 57.486 65.115 34.385 57.534 45.262 44 58 65 36 58 44 1 1 1 1 1 1 6393.3 15101 1454;2674 14908 23151 30062 30062 1 QEAGISEGQGTAGEEEEK Unmodified 1847.8021 0.80209464 181 O43583 DENR Density-regulated protein yes yes 0 0 0 0 0 2 0 1 38.387 38.387 3 0.011224 10373 TMT1-1 45.916 34.654 23.3 36.39 20.511 22.277 29.083 6.6321 22 36 22 22 29 7 1 1 1 1 1 1 3419.3 15102 181 14909 23152 30063 30063 1 QEAIDWLLGLAVR Unmodified 1482.8195 0.81946344 2947 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 0 9 0 1 90.959 90.959 3 0.00027188 27808 TMT1-8 79.886 53.948 14.748 29.511 20.974 22.121 35.906 21.361 14 29 22 22 36 21 1 1 1 1 1 1 4806.9 15103 2947 14910 23153 30064 30064 1 QEALEWLIR Unmodified 1156.6241 0.6240581 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 69.395 69.395 2 0.0020324 21165 TMT1-6 107.79 49.929 77.413 70.883 93.837 72.458 92.414 75.181 73 73 94 73 94 73 1 1 1 1 1 1 11652 15104 2717 14911 23154 30065 30065 1 QEALKNDLVEALK Unmodified 1469.809 0.80895834 1145 P47756-2 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 0 1 6 0 1 62.303 62.303 3 0.0013955 19010 TMT1-5 77.204 49.997 77.134 108.96 108.54 55.448 78.537 75.577 73 109 109 58 80 73 1 1 1 1 1 1 7491.4 15105 1145 14912 23155 30066 30066 1 QEDCCGTVGTSWGFNK Unmodified 1844.7458 0.74578251 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 5.5 0.5 1 1 55.684 55.684 3 7.2333E-06 16364 TMT1-5 89.866 81.678 137.82 204.92 106.22 141.43 163.29 142.45 130 203 116 138 167 138 2 2 2 2 2 2 27513 15106 1797 14913 23156;23157 30067;30068 30068 2 QEDKDDLDVTELTNEDLLDQLVK Unmodified 2687.3025 0.30251535 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 1 4 0 2 79.172 79.172 4;5 2.4947E-18 25705 TMT1-3 115.43 90.972 153.68 281.93 82.057 158.69 193.91 141.57 145 276 94 153 197 138 3 3 2 3 3 3 19190 15107 1089;1090 14914 23158;23159 30069;30070;30071 30069 3 QEDVIATANLSR Unmodified 1315.6732 0.67319314 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 2.67 1.49 2 1 1 1 1 46.458 46.458 2;3 4.1513E-69 13847 TMT1-2 248.5 160.61 1317.6 1779.2 1738.3 1352 2165.7 1802.6 1246 1783 1767 1369 2189 1749 8 8 8 8 8 8 383960 15108 3010;3014 14915 23160;23161;23162;23163;23164;23165 30072;30073;30074;30075;30076;30077;30078;30079 30075 8 QEEASGGPTAPK Unmodified 1170.5517 0.55168102 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 3 0 2 32.336 32.336 2;3 3.6797E-08 8267 TMT1-2 134.56 120.79 215.16 220.54 260.34 198.16 436.28 249.79 203 225 262 203 434 246 2 2 2 2 2 2 55370 15109 1225 14916 23166;23167 30080;30081 30081 2 QEEEMMAKEEELVK Unmodified 1721.7852 0.78518771 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 2.5 0.5 1 1 56.693 56.693 3 1.3749E-07 17903 TMT1-2 113.59 77.829 122.65 166.67 164.63 122.29 124.1 212.86 116 167 167 123 131 203 2 2 2 2 2 2 36441 15110 1019 14917 23168;23169 30082;30083 30083 2 QEEKHLK Unmodified 910.48723 0.48723027 1270 P52594-2;P52594-3;P52594;P52594-4 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 0 0 1 7 0 1 32.75 32.75 4 0.04353 6747 TMT1-6 55.383 7.8088 91.454 231.18 122.87 101.89 120.62 158.59 87 225 131 102 125 152 1 1 1 1 1 1 5777.4 15111 1270 14918 23170 30084 30084 1 QEESLMPSQVVK Unmodified 1373.6861 0.68606601 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 52.557 52.557 3 0.0027988 15305 TMT1-3 70.412 46.425 92.221 115.67 91.812 55.914 106.75 136.6 87 116 94 58 109 131 1 1 1 1 1 1 7810.7 15112 2654 14919 23171 30085 30085 1 QEGLMIASSLLNEGYLQPAGDMSK Unmodified 2551.2298 0.22982488 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 7 0 1 82.568 82.568 4 3.7178E-07 26313 TMT1-6 76.198 56.82 45.477 65.157 56.008 58.581 78.393 75.581 43 65 58 58 80 73 1 1 1 1 1 1 13131 15113 567 14920 23172 30086 30086 1 QEIFQEQLAAVPEFR Unmodified 1803.9155 0.91554867 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 5 0 1 69.822 69.822 3 0.0055609 21799 TMT1-4 55.589 26.261 37.969 43.013 74.334 42.202 19.482 46.348 36 44 73 43 22 44 1 1 1 1 1 1 9785.5 15114 3047 14921 23173 30087 30087 1 QEIIEQLLSNIFHK Unmodified 1710.9305 0.93047046 1958 Q5H9R7-3;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 0 9 0 1 91.673 91.673 3 0.012059 28008 TMT1-8 50.079 28.522 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15115 1958 14922 23174 30088 30088 1 QEIQHLFR Unmodified 1069.5669 0.56687757 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 7 0 1 43.347 43.347 3 0.00075448 10891 TMT1-6 78.516 51.213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15116 479 14923 23175 30089 30089 1 QEISAAFK Unmodified 892.46543 0.46543219 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 6 0 1 47.993 47.993 2 0.0030392 13374 TMT1-5 133.57 116.19 305.8 469.79 324.1 242.49 376.18 265.36 289 466 337 246 379 259 1 1 1 1 1 1 34059 15117 578 14924 23176 30090 30090 1 QELAVFCSPEPPAK Unmodified 1571.7654 0.76537896 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.67 0.471 1 2 59.197 59.197 2;3 1.2423E-06 17825 TMT1-5 106.32 90.433 1004.6 979.94 1294.4 1011.8 1261.3 1635.5 948 1005 1297 1018 1304 1568 4 4 4 4 4 4 315350 15118 3010 14925 23177;23178;23179 30091;30092;30093;30094 30094 4 QELDDILK Unmodified 972.51278 0.51277632 1800 Q14839;Q14839-2;Q8TDI0;Q12873-2;Q12873;Q12873-3 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 0 0 3 0 1 51.49 51.49 3 0.033103 15907 TMT1-2 53.493 19.307 77.364 70.747 102.17 79.909 76.643 98.017 73 73 102 80 80 94 1 1 1 1 1 1 11858 15119 1800 14926 23180 30095 30095 1 QELEEICHDLEAR Unmodified 1640.7464 0.74643444 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0 2 58.164 58.164 3 3.972E-06 18175 TMT1-1 110.98 102.47 30.804 28.301 28.558 21.689 34.827 53.372 29 29 29 22 36 51 1 1 1 1 1 1 14443 15120 1019 14927 23181;23182 30096;30097 30096 2 QELELSVK Unmodified 944.51786 0.51786169 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 5 0 1 51.339 51.339 3 0.016849 14548 TMT1-4 65.347 14.469 99.236 152.63 143.84 76.034 150.59 142.81 94 152 145 80 152 138 1 1 1 1 1 1 9524.1 15121 1910 14928 23183 30098 30098 1 QELGGLGISIK Unmodified 1113.6394 0.63937381 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 0 0 0 0 7 0 1 61.538 61.538 3 0.01742 18085 TMT1-6 54.343 27.67 61.44 72.324 72.116 49.85 84.805 113.77 58 73 73 51 87 109 1 1 1 1 1 1 4914.6 15122 1740 14929 23184 30099 30099 1 QELILSNSEDK Unmodified 1274.6354 0.63541065 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 4 0 1 49.812 49.812 3 3.8277E-06 14209 TMT1-3 120.03 92.262 108.26 99.302 115.2 85.534 143.09 135.56 102 102 116 87 145 131 1 1 1 1 1 1 13913 15123 1287 14930 23185 30100 30100 1 QELNEPPK Unmodified 953.48181 0.48181054 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 3 0.707 1 2 1 37.43 37.43 2;3 0.0042956 9156 TMT1-3 126.07 56.243 415.35 542.64 424.99 466.21 423.54 566.75 392 543 444 457 444 543 5 5 5 5 5 5 34691 15124 41 14931 23186;23187;23188;23189 30101;30102;30103;30104;30105 30104 5 QELSGISTT Unmodified 934.46074 0.46074075 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5 EVL Ena/VASP-like protein yes no 0 0 0 0 0 3 0 1 47.974 47.974 2 0.014732 14458 TMT1-2 82.426 62.144 38.035 50.754 56.57 66.2 78.336 67.055 36 51 58 65 80 65 1 1 1 1 1 1 9769.9 15125 2872 14932 23190 30106 30106 1 QEMQEVQSSR Unmodified 1220.5455 0.54554978 848 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 0 2 0 1 30.81 30.81 2 0.0087999 7338 TMT1-1 86.014 61.925 15.829 37.015 13.271 14.775 44.071 37.118 15 36 15 15 44 36 1 1 1 1 1 1 3212.5 15126 848 14933 23191 30107 30107 1 QEMTLTCEKPIK Unmodified 1476.7316 0.73163599 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 1 6 0 1 46.716 46.716 3 1.6662E-08 12858 TMT1-5 129.77 93.451 215.78 174.78 194.84 126.93 246.73 168.85 203 181 196 131 247 165 1 1 1 1 1 1 15943 15127 1684 14934 23192 30108 30108 1 QEPVKPEEGR Unmodified 1167.5884 0.58840088 1393 P61586 RHOA Transforming protein RhoA yes yes 0 0 0 0 1 3 0 1 29.781 29.781 3 0.0028193 7247 TMT1-2 87.001 77.638 146.03 189.24 183.87 191.67 209.68 156.05 138 190 189 189 214 152 1 1 1 1 1 1 14832 15128 1393 14935 23193 30109 30109 1 QEPYTLPQGFTWDALDLGDR Unmodified 2321.0964 0.096426166 959 P30419-2;P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 0 0 5 0 1 81.33 81.33 3 0.0022193 26278 TMT1-4 51.568 51.054 15.895 22.088 14.825 0 22.228 22.818 15 22 15 0 22 22 1 1 1 0 1 1 4212.5 15129 959 14936 23194 30110 30110 1 QEQALLEEIER Unmodified 1356.6885 0.68850885 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 59.692 59.692 2 0.024863 18731 TMT1-1 68.809 33.585 15.855 14.422 28.06 53.27 42.557 29.7 15 15 29 51 44 29 1 1 1 1 1 1 4121.8 15130 1833 14937 23195 30111 30111 1 QESGYLIEEIGDVLLAR Unmodified 1903.9891 0.98910755 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 4.5 0.5 1 1 91.39 91.39 3 0.010525 30132 TMT1-4 49.036 41.979 15.954 23.305 29.899 0 21.422 46.293 15 22 29 0 22 44 1 1 2 0 2 2 2630.9 15131 2325 14938 23196;23197 30112;30113 30113 2 QESLPHAGPIIVHCSAGIGR Unmodified 2098.0742 0.074191356 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 6 0 1 43.169 43.169 4 2.7691E-05 11446 TMT1-5 67.56 51.067 108.49 99.946 75.743 95.939 121.7 74.345 102 102 80 94 123 73 1 1 1 1 1 1 11547 15132 936 14939 23198 30114 30114 1 QESTEYR Unmodified 911.39847 0.39847484 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 2 0 1 23.656 23.656 2 0.017824 4484 TMT1-1 99.305 85.633 23.108 28.3 59.718 27.463 35.88 14.966 22 29 58 29 36 15 1 1 1 1 1 1 8634.2 15133 575 14940 23199 30115 30115 1 QESTEYRR Unmodified 1067.4996 0.49958587 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 2 0 1 19.658 19.658 3 0.0018219 3374 TMT1-1 113.71 66.625 20.024 41.847 25.534 23.991 38.228 42.615 19 41 27 24 39 41 1 1 1 1 1 1 4170.4 15134 575 14941 23200 30116 30116 1 QESTVSFNPYEPELAPWAADK Unmodified 2378.1067 0.1066565 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 5 0 1 73.036 73.036 3 0.0023475 23036 TMT1-4 40.402 37.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15135 1115 14942 23201 30117 30117 1 QEVCQSYK Unmodified 1040.4597 0.45969489 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 4 0 1 35.038 35.038 2 7.3238E-25 8353 TMT1-3 172.23 137.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15136 555 14943 23202 30118 30118 1 QEYDESGPSIVHR Unmodified 1515.6954 0.69538514 1357;1479;2044;9;615 P60709;P63261;A5A3E0;P0CG39;Q6S8J3;Q9BYX7 ACTB;ACTG1;POTEF;POTEJ;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member F;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 0 0 0 0 0 3.82 1.9 1 2 2 3 1 1 1 35.95 35.95 2;3;4 3.4142E-74 9656 TMT1-2 253.83 240.41 2979.7 4032.8 3623.9 2895.9 4408.5 3295 2816 4036 3706 2923 4450 3209 18 18 18 18 18 18 2864700 15137 1357;1479;9;615;2044 14944 23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213 30119;30120;30121;30122;30123;30124;30125;30126;30127;30128;30129;30130;30131;30132;30133;30134;30135;30136;30137 30128 19 QEYDESGPSIVHRK Unmodified 1643.7903 0.79034816 1357;1479;2044;9;615 P60709;P63261;A5A3E0;P0CG39;Q6S8J3;Q9BYX7 ACTB;ACTG1;POTEF;POTEJ;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member F;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 0 0 0 0 1 4.67 0.943 2 1 33.972 33.972 3;4 1.3829E-14 7779 TMT1-5 130.24 110.5 1216.5 1449.4 805.6 932.89 846.24 1553.5 1145 1452 869 912 901 1480 3 3 3 3 3 3 109150 15138 1357;1479;9;615;2044 14945 23214;23215;23216 30138;30139;30140 30140 3 QFAEENGLLFLEASAK Unmodified 1765.8887 0.88866522 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 6 0 1 74.981 74.981 3 0.00058503 23998 TMT1-5 69.522 51.157 77.351 102.01 77.851 49.355 92.963 90.089 73 102 80 51 94 87 1 1 1 1 1 1 7265.7 15139 1378 14946 23217 30141 30141 1 QFAEMYVAK Unmodified 1085.5216 0.52156686 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 7 0 1 55.472 55.472 2 0.00085411 15688 TMT1-6 86.898 35.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15140 685 14947 23218 30142 30142 1 QFASQANVVGPWIQTK Unmodified 1772.921 0.9209684 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 9 0 1 65.032 65.032 3 1.0977E-11 17708 TMT1-8 115.31 88.342 138.29 225.81 191.45 167.33 201.27 220.25 131 224 197 167 207 212 1 1 1 1 1 1 32371 15141 195 14948 23219 30143 30143 1 QFDIQLLTHNDPK Unmodified 1567.7995 0.79945628 1156 P48507;P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit yes no 0 0 0 0 0 6 0 1 58.426 58.426 3 0.033967 17474 TMT1-5 45.33 22.451 61.61 56.608 56.82 50.042 123.04 96.693 58 58 58 51 123 94 1 1 1 1 1 1 11288 15142 1156 14949 23220 30144 30144 1 QFFLQFHFK Unmodified 1240.6393 0.63931423 1855 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 0 0 9 0 1 67.082 67.082 3 0.013798 18523 TMT1-8 55.549 28.22 30.599 43.921 49.767 58.928 79.733 36.101 29 44 51 58 80 36 1 1 1 1 1 1 3729.2 15143 1855 14950 23221 30145 30145 1 QFGAQANVIGPWIQTK Unmodified 1756.9261 0.92605378 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 9 0 1 68.574 68.574 3 3.4251E-06 19208 TMT1-8 85.619 59.753 230.56 315.73 295.7 221.77 347.08 287.51 218 316 301 225 351 279 2 2 2 2 2 2 124030 15144 672 14951 23222 30146;30147 30147 2 QFITILEATHR Unmodified 1327.7248 0.72483478 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 8 0 1 58.364 58.364 3 4.3765E-05 16868 TMT1-7 107.09 67.784 53.833 72.57 88.029 33.201 47.877 114.83 51 73 87 36 51 109 1 1 1 1 1 1 12681 15145 378 14952 23223 30148 30148 1 QFLDYFK Unmodified 959.47527 0.4752686 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 8 0 1 68.118 68.118 3 0.022646 20740 TMT1-7 65.252 32.132 46.476 81.066 55.045 58.659 77.327 106.53 44 80 58 58 80 102 1 1 1 1 1 1 5244.7 15146 845 14953 23224 30149 30149 1 QFLFRPWDVTK Unmodified 1435.7612 0.76122028 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 1 9 0 1 65.164 65.164 3 0.00031923 17771 TMT1-8 89.43 55.54 354.77 521.46 345.29 371.89 518.62 330.58 335 518 365 368 523 324 1 1 1 1 1 1 25140 15147 845 14954 23225 30150 30150 1 QFLQAAEAIDDIPFGITSNSDVFSK Unmodified 2712.3283 0.3282766 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 6.5 0.5 1 1 90.301 90.301 4 6.3191E-08 29179 TMT1-6 75.524 65.675 101.1 92.156 62.409 66.548 99.465 90.97 95 94 66 66 101 88 2 2 2 2 2 2 30219 15148 530 14955 23226;23227 30151;30152 30152 2 QFQELNELAEFAR Unmodified 1593.7787 0.77872084 2390 Q96D31-2;Q96D31 ORAI1 Calcium release-activated calcium channel protein 1 yes no 0 0 0 0 0 5 0 1 71.137 71.137 3 0.0022319 22288 TMT1-4 52.966 45.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15149 2390 14956 23228 30153 30153 1 QFSQILK Unmodified 862.49125 0.49125301 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 8 0 1 53.219 53.219 2 0.0044491 14879 TMT1-7 83.206 25.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15150 1583 14957 23229 30154 30154 1 QFSQYIK Unmodified 912.47052 0.47051757 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 8 0 1 50.424 50.424 3 0.0002587 13772 TMT1-7 100.75 65.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15151 1132 14958 23230 30155 30155 1 QFTSSTSYNR Unmodified 1189.5364 0.53636531 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.5 0.5 1 1 34.251 34.251 2 1.3623E-09 7728 TMT1-4 175.07 166.6 169.72 249.39 118.23 172.79 143.21 228.3 160 247 131 167 152 218 2 2 2 2 2 2 29551 15152 437 14959 23231;23232 30156;30157 30156 2 QFVFDLHSGK Unmodified 1176.5928 0.59275797 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 8 0 1 54.027 54.027 3 3.5638E-05 15181 TMT1-7 130.56 121.6 251.44 310.31 217.93 223.54 383.56 258.75 237 311 229 223 385 253 1 1 1 1 1 1 34042 15153 2521 14960 23233 30158 30158 1 QFVQSAK Unmodified 806.42865 0.42865276 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 38.661 38.661 2 0.0036857 9102 TMT1-6 138.83 66.592 721 606.91 757.54 579.45 961.66 645.2 679 628 761 588 966 631 3 3 3 3 3 3 119460 15154 3010 14961 23234;23235 30159;30160;30161 30159 3 QFVTATDVVR Unmodified 1134.6033 0.60332266 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 5.5 0.5 1 1 48.65 48.65 2 1.4196E-09 13522 TMT1-4 174.86 154.87 416.38 660.27 512.89 374.63 423.14 548.64 394 655 528 378 439 526 2 2 2 2 2 2 196860 15155 690 14962 23236;23237 30162;30163 30162 2 QGANINEIR Unmodified 1013.5254 0.52540669 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 34.637 34.637 2 4.5369E-05 9175 TMT1-2 153.24 126.08 215.57 213.06 196.93 198.68 202.49 234.07 203 217 203 196 210 225 2 2 2 2 2 2 44982 15156 1843 14963 23238;23239 30164;30165 30164 2 QGDTGDWIGTFLGHK Unmodified 1630.774 0.77396981 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 7 0 1 68.299 68.299 3 0.00059433 20799 TMT1-6 73.279 59.617 61.444 72.335 71.408 65.734 56.093 45.303 58 73 73 65 58 44 1 1 1 1 1 1 10824 15157 3000 14964 23240 30166 30166 1 QGEQIEIIR Unmodified 1084.5877 0.58767259 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 2.5 0.5 1 1 45.053 45.053 2 0.013463 13035 TMT1-1 84.17 15.435 154.97 181.01 130.73 155.87 131.46 166.81 146 182 138 152 138 160 2 2 2 2 2 2 21321 15158 126 14965 23241;23242 30167;30168 30167 2 QGFGELLQAVPLADSFR Unmodified 1846.9577 0.95774784 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 8 0 1 83.371 83.371 3 3.67E-10 26668 TMT1-7 112.82 81.017 46.547 65.074 56.672 43.651 56.558 61.28 44 65 58 44 58 59 1 1 1 1 1 1 18601 15159 914 14966 23243 30169 30169 1 QGFGNVATNTDGK Unmodified 1307.6106 0.61059288 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 4.86 1.64 1 3 3 43.036 43.036 2;3 1.0618E-21 11273 TMT1-5 190.36 125.2 1816.3 2500.7 2078.6 1694.4 2526.2 2269.9 1716 2498 2138 1707 2564 2197 7 7 7 7 7 7 429470 15160 438 14967 23244;23245;23246;23247;23248;23249;23250 30170;30171;30172;30173;30174;30175;30176 30175 7 QGGGGGGGSVPGIER Unmodified 1283.6218 0.62182627 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 3 0 1 34.333 34.333 2 0.022197 9073 TMT1-2 58.723 35.894 30.668 35.478 45.325 0 36.63 29.869 29 36 44 0 36 29 1 1 1 0 1 1 6363.2 15161 1261 14968 23251 30177 30177 1 QGGLGPMNIPLVSDPK Unmodified 1621.8498 0.84977729 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 7 0 1 67.475 67.475 3 0.00058095 20411 TMT1-6 69.594 47.721 53.987 80.554 55.381 50.946 79.551 52.096 51 80 58 51 80 51 1 1 1 1 1 1 8745.6 15162 1606 14969 23252 30178 30178 1 QGKGDSPEAR Unmodified 1043.4996 0.49958587 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 4 0 1 22.217 22.217 3 0.016534 3795 TMT1-3 64.906 47.184 36.254 13.061 27.173 24.112 26.611 15.231 34 15 27 24 27 15 1 1 1 1 1 1 4794.2 15163 776 14970 23253 30179 30179 1 QGLGASVVSWSDVIVACAPWQHWNVLEK Unmodified 3135.56 0.56002464 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 9 0 2 88.19 88.19 4;5 9.4086E-48 26695 TMT1-8 144.7 126.14 239.93 250.41 219.52 172.81 286.37 293.51 226 254 225 175 291 283 4 4 4 4 4 4 104250 15164 565 14971 23254;23255 30180;30181;30182;30183 30181 4 QGLLPLTFADPADYNK Unmodified 1761.8938 0.8937506 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 7 0 1 75.713 75.713 3 7.177E-11 23663 TMT1-6 96.666 85.878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15165 2492 14972 23256 30184 30184 1 QGNEIFLALEEAISAQK Unmodified 1859.9629 0.9628928 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 7 0 1 89.179 89.179 3 1.6484E-07 28792 TMT1-6 97.095 78.263 23.342 28.95 19.876 46.534 19.832 30.348 22 29 22 44 22 29 1 1 1 1 1 1 6465.7 15166 224 14973 23257 30185 30185 1 QGNMTAALQAALK Unmodified 1315.6918 0.69182009 150 O15511 ARPC5 Actin-related protein 2/3 complex subunit 5 yes yes 0 0 0 0 0 8 0 1 61.422 61.422 3 0.00099913 18064 TMT1-7 75.89 51.098 183.56 328.17 250.69 249.02 377.7 303.69 174 324 261 248 382 295 2 2 2 2 2 2 48544 15167 150 14974 23258 30186;30187 30186 2 QGPGPGGPK Unmodified 793.40825 0.40825167 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 6 0 1 29.769 29.769 2 0.014122 6168 TMT1-5 83.265 55.158 38.349 20.326 29.689 30.491 28.156 22.649 36 22 30 30 29 22 1 1 1 1 1 1 1620.1 15168 857 14975 23259 30188 30188 1 QGQDAIPPPDPGEQIFNLPK Unmodified 2160.0851 0.085133198 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 0 5 0 1 69.278 69.278 4 0.024592 21488 TMT1-4 36.246 10.927 108.1 115.05 128.73 124.94 155.15 188.52 102 117 131 124 160 181 2 2 2 2 2 2 11598 15169 1862 14976 23260 30189;30190 30189 2 QGQDNLSSVK Unmodified 1074.5306 0.53055165 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 4.5 0.5 1 1 37.612 37.612 2 0.00017192 9082 TMT1-4 131.82 68.254 91.993 146.34 104.15 101.91 121.15 112.74 87 145 109 101 124 109 2 2 2 2 2 2 16344 15170 944 14977 23261;23262 30191;30192 30192 2 QGQETAVAPSLVAPALNKPK Unmodified 2018.116 0.1160394 1868 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 1 8 0 1 54.384 54.384 4 0.00016456 15346 TMT1-7 64.249 54.592 138.91 181.13 124.96 117.13 117.28 174.68 131 181 131 116 123 167 1 1 1 1 1 1 18977 15171 1868 14978 23263 30193 30193 1 QGQHWLEK Unmodified 1024.509 0.50902834 1484 P67812-4;P67812;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 0 6 0 1 38.678 38.678 3 0.041796 9617 TMT1-5 50.04 7.297 231 326.66 213.08 191.42 246.9 260.52 218 325 224 191 253 251 1 1 1 1 1 1 15957 15172 1484 14979 23264 30194 30194 1 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSR Unmodified 4272.0935 0.093472638 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 5 0 3 88.38 88.38 4;5 6.7758E-08 28897 TMT1-4 54.691 50.374 38.356 80.712 52.915 15.023 83.612 46.04 36 79 51 14 81 44 4 7 4 2 5 4 20653 + 15173 506 14980 23265;23266;23267 30195;30196;30197;30198;30199;30200;30201;30202 30198 8 QGQYSPMAIEEQVAVIYAGVR Unmodified 2308.1522 0.15216691 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 80.308 80.308 3 2.1763E-06 26084 TMT1-5 66.644 50.701 30.837 20.838 29.332 14.384 13.981 30.515 29 22 29 15 15 29 1 1 1 1 1 1 3960.4 15174 888 14981 23268;23269 30203;30204 30204 2 QGSATVGLK Unmodified 859.47633 0.47633123 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 6.5 0.5 1 1 38.741 38.741 2 0.00031303 9608 TMT1-5 94.692 45.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15175 890 14982 23270;23271 30205;30206 30205 2 QGTEIDGR Unmodified 874.41446 0.41445926 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 2 0 1 26.823 26.823 2 0.0057184 5791 TMT1-1 114.99 37.247 37.878 81.616 56.816 19.126 81.563 36.049 36 80 58 22 80 36 1 1 1 1 1 1 7318.2 15176 786 14983 23272 30207 30207 1 QGTYYDPVK Unmodified 1069.508 0.50802529 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 4 0 1 44.552 44.552 3 0.027236 12102 TMT1-3 52.79 28.939 99.401 169.28 102.02 118.06 140.53 166.55 94 167 109 116 145 160 1 1 1 1 1 1 10730 15177 1797 14984 23273 30208 30208 1 QGVAEAAGK Unmodified 829.42938 0.42938104 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 0 4.5 0.5 1 1 33.924 33.924 2 0.00026267 7599 TMT1-4 143.03 31.218 295.32 237.91 298.33 235.76 466.72 257.45 278 247 300 240 465 254 3 3 3 3 3 3 32179 15178 1054 14985 23274;23275 30209;30210;30211 30210 3 QGVLTHGR Unmodified 866.47225 0.47224891 1442 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 0 6 0 1 23.478 23.478 3 0.0040425 4016 TMT1-5 88.37 79.597 25.539 23.549 15.849 22.523 30.726 19.377 24 24 17 22 31 19 1 1 1 1 1 1 1869 15179 1442 14986 23276 30212 30212 1 QHFNDLK Unmodified 900.44537 0.44536545 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 6 0 1 34.996 34.996 3 0.018187 8185 TMT1-5 69.825 15.213 129.68 240.36 183.08 166.78 257.36 232.51 123 237 190 167 261 225 1 1 1 1 1 1 18129 15180 2135 14987 23277 30213 30213 1 QHFPATPLLDYALEVEK Unmodified 1970.0149 0.014928368 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 6 0 1 71.75 71.75 4 0.0040006 22719 TMT1-5 52.569 33.494 38.187 34.986 44.431 19.88 80.723 59.525 36 36 44 22 80 58 1 1 1 1 1 1 6614 15181 1283 14988 23278 30214 30214 1 QHGDVVSAIR Unmodified 1080.5676 0.56760585 104 O14745;O14745-2 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 0 0 0 0 0 4 0 1 30.459 30.459 3 0.011065 6499 TMT1-3 63.212 41.441 38.037 58.313 49.913 35.435 49.9 52.942 36 58 51 36 51 51 1 1 1 1 1 1 9099.5 15182 104 14989 23279 30215 30215 1 QHITLALEK Unmodified 1051.6026 0.60259438 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 7 0 1 45.433 45.433 3 0.016296 11664 TMT1-6 60.641 9.196 84.582 132.02 99.548 55.427 108.13 97.118 80 131 102 58 109 94 1 1 1 1 1 1 22516 15183 1913 14990 23280 30216 30216 1 QHLGLVGGEEPPR Unmodified 1387.7208 0.72081203 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 4 0 1 37.405 37.405 3 1.6161E-06 9325 TMT1-3 114.56 103.95 253.09 363.81 256.52 232.27 319.73 308.54 239 362 268 232 326 298 3 3 3 3 3 3 29476 15184 1067 14991 23281 30217;30218;30219 30218 3 QHLPLIK Unmodified 847.52797 0.52797287 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.67 3.3 1 2 42.739 42.739 2;3 0.009604 10679 TMT1-7 81.958 38.712 1103.9 1690.5 1481 1149.1 1910.1 1657.5 1045 1682 1515 1165 1931 1606 4 4 4 4 4 4 483320 15185 437 14992 23282;23283;23284 30220;30221;30222;30223 30222 4 QHLYVDK Unmodified 901.46577 0.46576654 1285 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 0 5 0 1 34.911 34.911 3 0.0065097 8023 TMT1-4 54.157 30.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15186 1285 14993 23285 30224 30224 1 QHPVPPPAQNQNQVR Unmodified 1708.8757 0.87574954 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 4.67 0.471 1 2 26.084 26.084 3;4 1.0281E-10 4567 TMT1-4 122.46 93.647 42.315 47.187 61.707 52.37 41.902 49.972 40 48 62 52 44 48 4 4 4 4 4 4 16647 15187 1881 14994 23286;23287;23288 30225;30226;30227;30228 30227 4 QHQLGVWPLLPGSFK Unmodified 1705.9304 0.93041088 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 9 0 1 67.172 67.172 3 1.0445E-10 18560 TMT1-8 106.42 81.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15188 666 14995 23289 30229 30229 1 QHSDPCALNPR Unmodified 1293.5884 0.58841765 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 26.16 26.16 3 0.0014298 5826 TMT1-2 82.261 59.54 38.191 34.998 43.708 36.095 34.457 44.855 36 36 44 36 36 43 1 1 1 1 1 1 5983.6 15189 471 14996 23290 30230 30230 1 QHTFVETESVR Unmodified 1331.647 0.64697839 1154 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 0 3 0 1 32.527 32.527 3 0.005063 8386 TMT1-2 67.997 38.524 30.662 51.651 32.655 68.327 41.058 53.194 29 51 36 65 44 51 1 1 1 1 1 1 12488 15190 1154 14997 23291 30231 30231 1 QHTVTTTTK Unmodified 1015.5298 0.52982336 464 P61768;P04156 PRNP Major prion protein yes no 0 0 0 0 0 6 0 1 24.219 24.219 3 0.011569 4164 TMT1-5 64.73 43.828 15.977 10.444 10.904 6.522 25.473 10.999 15 11 11 7 25 11 1 1 1 1 1 1 879.01 15191 464 14998 23292 30232 30232 1 QHVIDGEK Unmodified 924.46649 0.46649483 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 4 0 1 30.44 30.44 3 0.0060938 6528 TMT1-3 80.755 61.119 184.79 197.77 153.52 176.9 219.78 155.76 174 200 161 174 223 152 1 1 1 1 1 1 17738 15192 2943 14999 23293 30233 30233 1 QHVVSVEEALLATGQWK Unmodified 1893.9949 0.99486163 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 7.33 0.471 2 1 66.262 66.262 3;4 1.0176E-13 19999 TMT1-6 119.04 95.53 692.37 701.58 619.78 511.58 880.82 683.76 652 713 636 517 887 665 6 6 6 6 6 6 269270 + 15193 32;554 15000 23294;23295;23296 30234;30235;30236;30237;30238;30239 30237 6 QHWVVFK Unmodified 942.50757 0.50757178 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 9 0 1 48.447 48.447 3 0.0082642 11225 TMT1-8 79.116 43.821 625.29 905.71 900.36 770.96 1077.7 755.95 592 905 917 773 1089 738 2 2 2 2 2 2 178540 15194 2112 15001 23297 30240;30241 30241 2 QHWVVFKETTLSYYK Unmodified 1927.9832 0.98323431 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 1 9 0 1 58.431 58.431 4 0.035264 15103 TMT1-8 45.33 28.262 123.29 129.59 88.668 104.24 104.53 136.66 116 131 94 102 109 131 1 1 1 1 1 1 6681 15195 2112 15002 23298 30242 30242 1 QHYIDLK Unmodified 915.48142 0.48141661 846 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 0 6 0 1 40.261 40.261 3 0.0075005 10238 TMT1-5 86.794 51.97 354.34 391.64 347.81 295.84 486.14 373.09 334 396 357 298 490 363 2 2 2 2 2 2 59658 15196 846 15003 23299 30243;30244 30243 2 QIATLHAQVADMK Oxidation (M) 1440.7395 0.73949856 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 0 6.5 0.5 1 1 41.434 41.434 3 1.0113E-05 10671 TMT1-5 111.35 80.242 222.99 312.84 308.51 206.03 330.12 284.8 211 313 312 211 334 276 2 2 2 2 2 2 35690 15197 1019 15004 23300;23301 30245;30246 30245 192 2 QIATLHAQVADMK Unmodified 1424.7446 0.74458394 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 7 0 1 47.332 47.332 3 1.4989E-16 12457 TMT1-6 168.67 157.62 718.68 1268 1128.6 831.42 1091.2 1135.1 682 1255 1151 841 1117 1094 1 1 1 1 1 1 170150 15198 1019 15004 23302 30247 30247 1 QIATLHAQVADMKK Oxidation (M) 1568.8345 0.83446158 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 1 8 0 1 39.307 39.307 4 0.0025914 9342 TMT1-7 64.52 39.961 122.66 204.48 130.2 139.79 174.36 248.73 116 202 138 138 181 238 1 1 1 1 1 1 9266.5 15199 1019 15005 23303 30248 30248 192 1 QIATLHAQVADMKK Unmodified 1552.8395 0.83954696 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 8 0 1 44.97 44.97 4 2.3928E-08 11655 TMT1-7 115.78 83.718 524.86 815.22 544.39 539.69 729.24 948.18 496 808 573 536 752 909 2 2 2 2 2 2 44288 15200 1019 15005 23304 30249;30250 30250 2 QIDLLTYCNLVHGR Unmodified 1700.8668 0.86682434 1872 Q15762 CD226 CD226 antigen yes yes 0 0 0 0 0 7 0 1 61.208 61.208 3 6.2311E-15 17989 TMT1-6 137.46 132.7 68.553 117.11 101.17 40.877 62.989 90.945 65 116 102 44 65 87 1 1 1 1 1 1 19914 15201 1872 15006 23305 30251 30251 1 QIDLSTVDLK Unmodified 1130.6183 0.61830402 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 0 6 0 1 62.354 62.354 2 0.0043445 18992 TMT1-5 93.258 32.668 68.791 78.92 93.416 72.064 114.7 96.931 65 80 94 73 116 94 1 1 1 1 1 1 14352 15202 1313 15007 23306 30252 30252 1 QIDLSTVDLKK Unmodified 1258.7133 0.71326704 1313 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 1 7 0 1 56.865 56.865 3 0.00093353 16223 TMT1-6 91.093 45.178 350.6 546.02 483.96 311.02 467.89 457.82 332 543 492 319 476 442 1 1 1 1 1 1 35841 15203 1313 15008 23307 30253 30253 1 QIDNPDYK Unmodified 991.46108 0.4610751 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 3.33 0.943 1 2 40.148 40.148 2;3 0.0035785 10353 TMT1-3 130.75 104.15 306.62 489.52 349.67 273.41 394.21 430.08 290 485 363 276 403 414 3 3 3 3 3 3 220250 15204 918 15009 23308;23309;23310 30254;30255;30256 30256 3 QIEAQEKPR Unmodified 1097.5829 0.58292157 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 5 0 1 30.67 30.67 3 0.0013134 6347 TMT1-4 100.88 55.717 88.022 96.795 92.218 72.705 84.413 94.597 83 98 94 73 87 91 1 1 1 1 1 1 6495.8 15205 1546 15010 23311 30257 30257 1 QIEEQTK Unmodified 874.43961 0.43961137 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2 0 1 33.424 33.424 3 0.0023217 8353 TMT1-1 71.501 21.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15206 894 15011 23312 30258 30258 1 QIEHTLNEK Unmodified 1110.5669 0.56693715 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-8 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 0 4 0 1 34.746 34.746 3 8.1714E-05 8208 TMT1-3 138.25 105.92 160.76 224.11 202.59 111.42 175.13 173.02 152 224 205 116 178 167 1 1 1 1 1 1 20743 15207 760;850 15012 23313 30259 30259 1 QIEYEYK Unmodified 971.46001 0.46001246 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 4 0 1 45.268 45.268 2 1.4627E-05 12407 TMT1-3 131.06 58.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15208 816 15013 23314 30260 30260 1 QIFLGGVDKR Unmodified 1131.64 0.64004252 488 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 0 1 9 0 1 48.324 48.324 3 0.038624 11079 TMT1-8 59.265 19.348 138.37 200.14 199.17 150.17 217.73 220.85 131 200 202 152 222 213 1 1 1 1 1 1 32208 15209 488 15014 23315 30261 30261 1 QIGENLIVPGGVK Unmodified 1322.7558 0.75580056 1892 Q16555-2;Q16555;Q14194;Q14194-2 DPYSL2;CRMP1 Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 0 7 0 1 60.418 60.418 3 0.0011503 17622 TMT1-6 74.987 53.524 146.27 222.29 115.18 85.958 120.58 120.22 138 220 123 87 123 116 1 1 1 1 1 1 29305 15210 1892 15015 23316 30262 30262 1 QIGNVAALPGIVHR Unmodified 1443.831 0.83103118 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 8 0 1 52.465 52.465 3 0.0075963 14579 TMT1-7 39.82 34.926 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15211 3001 15016 23317 30263 30263 1 QIGVEHVVVYVNK Unmodified 1482.8195 0.81946344 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 7 0 1 51.702 51.702 4 0.0059465 14184 TMT1-6 59.306 36.773 68.921 79.281 71.307 57.807 71.1 75.789 65 80 73 58 73 73 1 1 1 1 1 1 5932.1 15212 1180 15017 23318 30264 30264 1 QIIGQAK Unmodified 756.44939 0.4493882 73 O00483 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 0 0 0 0 0 7 0 1 39.63 39.63 3 0.01733 9440 TMT1-6 70.912 57.405 61.407 79.787 71.345 57.12 107.51 113.13 58 80 73 58 109 109 1 1 1 1 1 1 3017.7 15213 73 15018 23319 30265 30265 1 QIIQQNPSLLPALLQQIGR Unmodified 2129.2321 0.23207221 1302 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 0 9 0 2 81.558 81.558 3;4 3.9501E-06 24175 TMT1-8 70.117 58.678 92.042 146.47 95.788 95.216 96.608 135.82 87 145 101 94 101 130 3 3 3 3 3 3 20674 15214 1302 15019 23320;23321 30266;30267;30268 30268 3 QIKPYTLMSMVANLLYEK Unmodified 2141.1265 0.12646943 1191 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 1 9 0 1 92.192 92.192 4 2.3365E-10 28136 TMT1-8 101.96 71.272 23.307 36.407 19.44 46.289 34.245 37.399 22 36 22 44 36 36 1 1 1 1 1 1 3058.1 15215 1191 15020 23322 30269 30269 1 QILDEAGK Unmodified 872.46035 0.46034682 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3.5 1.5 1 2 1 46.209 46.209 2;3 0.002257 12672 TMT1-3 97.635 65.701 989.82 1299.4 1337.6 974.07 1619.6 1244.7 936 1305 1353 992 1632 1211 4 4 4 4 4 4 515580 15216 776 15021 23323;23324;23325;23326 30270;30271;30272;30273 30271 4 QILFQHR Unmodified 940.52428 0.52428448 327 O94874;O94874-2 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 9 0 1 37.449 37.449 3 0.047108 7216 TMT1-8 46.835 26.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15217 327 15022 23327 30274 30274 1 QILLGIQELLNEPNIQDPAQAEAYTIYCQNR Unmodified 3614.8039 0.80389632 1480 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 0 7 0 1 92.657 92.657 4 0.0060026 30032 TMT1-6 37.536 34.376 0 15.861 5.9264 15.622 22.294 0 0 15 7 15 22 0 0 1 1 1 1 0 4823.2 15218 1480 15023 23328 30275 30275 1 QIPYTMMK Unmodified 1010.4929 0.49290927 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 8 0 1 54.87 54.87 2 0.0012937 15533 TMT1-7 106.6 75.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15219 1537 15024 23329 30276 30276 1 QIQQLESNNR Unmodified 1228.616 0.61601261 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 35.71 35.71 2 0.038325 8639 TMT1-3 66.568 57.051 30.76 28.178 36.149 21.492 21.24 22.846 29 29 36 22 22 22 1 1 1 1 1 1 5667.6 15220 251 15025 23330 30277 30277 1 QISEGVEYIHK Unmodified 1301.6616 0.66156582 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5 0 1 46.22 46.22 3 0.0073861 12501 TMT1-4 64.65 28.366 688.62 1136 1061.7 791.52 1100.4 1105 653 1128 1080 801 1123 1066 1 1 1 1 1 1 30530 15221 1870 15026 23331 30278 30278 1 QISLEGSVK Unmodified 959.52876 0.52876073 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6 0 1 48.321 48.321 2 3.8658E-09 13429 TMT1-5 176.33 74.725 695.43 1365.8 1165.2 781.4 1368.6 1166.6 661 1346 1188 802 1381 1131 2 2 2 2 2 2 189700 15222 372 15027 23332 30279;30280 30279 2 QISNLQQSISDAEQR Unmodified 1715.8438 0.84384029 470 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 0 0 4 0 1 51.763 51.763 3 0.00531 15100 TMT1-3 56.215 39.489 37.777 65.145 87.819 49.736 41.107 76.645 36 65 87 51 44 73 1 1 1 1 1 1 16098 + 15223 470 15028 23333 30281 30281 1 QISQAYEVLSDAK Unmodified 1450.7304 0.73037367 976 P31689-2;P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 0 5 0 1 61.041 61.041 3 0.0041777 18338 TMT1-4 64.244 55.86 85.001 93.247 62.067 50.281 93.726 66.615 80 94 65 51 94 65 1 1 1 1 1 1 6984.6 15224 976 15029 23334 30282 30282 1 QISRDYGVLLEGSGLALR Unmodified 1946.0585 0.058524517 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 1 7 0 1 111.19 111.19 3 0.017613 34062 TMT1-6 47.09 20.979 6.3424 11.166 6.6067 5.9569 11.024 6.0814 6 11 7 6 11 6 1 1 1 1 1 1 12002 15225 949 15030 23335 30283 30283 1 QITDNIFLTTAEVIAQQVSDK Unmodified 2333.2115 0.21145592 1151 P48163-2;P48163 ME1 NADP-dependent malic enzyme yes no 0 0 0 0 0 7 0 2 99.127 99.127 3;4 8.1513E-06 32293 TMT1-6 57.806 56.822 23.496 21.824 0 23.782 14.062 15.589 22 22 0 22 15 15 1 1 0 1 1 1 1144.9 15226 1151 15031 23336;23337 30284;30285 30285 2 QITIEEGEQR Unmodified 1201.5939 0.59388018 2733 Q9NRW1;Q9NRW1-2 RAB6B Ras-related protein Rab-6B yes no 0 0 0 0 0 2 0 1 39.875 39.875 2 8.7194E-05 10881 TMT1-1 140.78 108.56 84.696 108.59 100.21 72.088 91.918 90.119 80 109 102 73 94 87 1 1 1 1 1 1 22126 15227 2733 15032 23338 30286 30286 1 QITQSALLAEAR Unmodified 1299.7147 0.71466402 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 5 0 1 50.836 50.836 2 0.0052715 14358 TMT1-4 78.043 51.096 30.736 44.3 26.534 45.596 48.627 76.43 29 44 29 44 51 73 1 1 1 1 1 1 5249.1 15228 1507 15033 23339 30287 30287 1 QITSADAVR Unmodified 959.50361 0.50360861 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 4 0 1 33.907 33.907 2 0.0031713 7902 TMT1-3 72.365 23.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15229 374 15034 23340 30288 30288 1 QITSYGETCPGLEQYAIK Unmodified 2056.9776 0.97755658 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 5.5 0.5 1 1 61.429 61.429 3 1.2857E-10 18626 TMT1-5 87.16 63.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15230 1232 15035 23341;23342 30289;30290 30290 2 QITVNDLPVGR Unmodified 1210.667 0.66698555 1606;989 Q06830;P32119 PRDX1;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 no no 0 0 0 0 0 5.5 0.5 1 1 53.136 53.136 2 7.4588E-32 15299 TMT1-5 211.68 166.91 415.67 447.47 452.31 369.55 420.36 453.85 392 454 460 370 433 437 3 3 3 3 3 3 103370 15231 1606;989 15036 23343;23344 30291;30292;30293 30292 3 QIVLTGILEQVVNCR Unmodified 1740.9556 0.95563935 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 81.41 81.41 3 0.00019508 24180 TMT1-8 68.179 53.678 23.193 28.537 45.186 13.311 20.81 46.31 22 29 44 15 22 44 1 1 1 1 1 1 6012.6 15232 2444 15037 23345 30294 30294 1 QIVWNGPVGVFEWEAFAR Unmodified 2104.053 0.053045209 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 8.5 0.5 1 1 86.969 86.969 3 1.2871E-09 26261 TMT1-8 96.143 76.605 122.89 183.52 110.42 102.1 149.09 182.3 116 182 117 102 153 175 4 4 4 4 4 4 45391 15233 397 15038 23346;23347 30295;30296;30297;30298 30298 4 QIWLGLFDDR Unmodified 1261.6455 0.64552182 1270 P52594-2;P52594-3;P52594;P52594-4 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 0 0 0 8 0 1 77.277 77.277 2 0.035941 24306 TMT1-7 67.704 32.409 54.116 42.058 66.346 26.664 57.376 60.191 51 44 65 29 58 58 1 1 1 1 1 1 6094.7 15234 1270 15039 23348 30299 30299 1 QIWLSSPSSGPK Unmodified 1285.6667 0.6666512 1894 Q16595 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes yes 0 0 0 0 0 9 0 1 54.492 54.492 3 0.024011 13577 TMT1-8 45.28 28.609 68.795 86.485 86.403 49.269 70.43 106.72 65 87 87 51 73 102 1 1 1 1 1 1 3986.2 15235 1894 15040 23349 30300 30300 1 QKDYETATLSEIK Unmodified 1524.7672 0.7671531 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 4.4 1.74 1 3 1 50.024 50.024 2;3;4 4.0551E-11 13911 TMT1-4 141.34 84.86 1228 1432.1 1221.5 994.91 1460.9 1299.3 1158 1443 1255 1002 1483 1258 6 6 6 6 6 6 211370 15236 672 15041 23350;23351;23352;23353;23354 30301;30302;30303;30304;30305;30306 30302 6 QKGADFLVTEVENGGSLGSK Unmodified 2035.0222 0.02219859 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 5 0 1 59.373 59.373 3 1.3476E-06 17654 TMT1-4 82.037 61.223 54.038 80.695 46.721 75.131 99.604 105.89 51 80 51 73 102 102 1 1 1 1 1 1 11622 15237 706;707 15042 23355 30307 30307 1 QKLHTDDELNWLDHGR Unmodified 1975.95 0.9500367 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 0 1 45.9 45.9 5 1.4714E-11 12335 TMT1-4 119.65 111 408.29 535.96 534.68 345.26 404.62 518.26 386 538 540 352 419 497 2 2 2 2 2 2 60395 15238 3010 15043 23356 30308;30309 30308 2 QKLPDGSEIPLPPILLGR Unmodified 1942.1251 0.12514752 2434 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase yes yes 0 0 0 0 1 8 0 1 73.625 73.625 3 0.00049713 22967 TMT1-7 66.152 56.231 46.616 50.158 57.595 43.028 86.731 66.815 44 51 58 44 87 65 1 1 1 1 1 1 17018 15239 2434 15044 23357 30310 30310 1 QKLQLEK Unmodified 885.52837 0.5283668 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 1 8 0 1 40.42 40.42 3 0.0078739 9783 TMT1-7 95.531 18.473 881.78 1134.4 699.04 702.54 646.29 1165.9 831 1133 742 692 687 1111 1 1 1 1 1 1 48534 15240 1019;1020;1029;2091 15045 23358 30311 30311 1 QKPITPETAEK Unmodified 1240.6663 0.66631685 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 1 5.5 0.5 1 1 37.175 37.175 3 8.5733E-06 9036 TMT1-5 117.27 95.223 843.72 1185.3 921.83 931.91 1343.5 902.94 797 1182 960 926 1355 883 3 3 3 3 3 3 105950 15241 1363 15046 23359;23360 30312;30313;30314 30313 3 QKPSNTEDFIEDIVK Unmodified 1761.8785 0.87849447 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 1 5 0 1 62.971 62.971 3 1.7412E-07 19082 TMT1-4 108.63 71.478 77.522 86.296 62.511 50.526 79.313 59.565 73 87 65 51 80 58 1 1 1 1 1 1 7607 15242 1125 15047 23361 30315 30315 1 QKTTQLK Unmodified 845.49707 0.49706667 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 9 0 1 37.89 37.89 3 0.041396 7348 TMT1-8 53.17 0 193.73 689.96 398.51 328.5 622.95 305.22 186 667 421 333 620 303 1 1 1 1 1 1 38276 15243 1960 15048 23362 30316 30316 1 QKVDSLLENLEK Unmodified 1414.7668 0.76675917 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8;P07910-3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 1 6 0 1 62.957 62.957 4 0.00070284 19260 TMT1-5 82.85 51.623 184.01 272.24 221 189.25 337.12 255.81 174 271 228 191 339 249 1 1 1 1 1 1 18424 15244 547 15049 23363 30317 30317 1 QLAAENR Unmodified 800.41407 0.41406533 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2 0.816 1 1 1 25.687 25.687 2 0.0014771 5613 TMT1-2 147.16 108.74 708.7 850.62 995.01 848.32 1197.4 883.66 670 860 1005 851 1211 861 4 4 4 4 4 4 137590 15245 1019 15050 23364;23365;23366 30318;30319;30320;30321 30321 4 QLADETLLK Unmodified 1029.5706 0.57062555 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 5 0 1 55.394 55.394 2 0.0010653 16097 TMT1-4 124.81 54.852 146.45 173.16 125.49 114.94 232.28 209.77 138 174 131 116 234 203 1 1 1 1 1 1 21234 15246 816 15051 23367 30322 30322 1 QLAEGTAQQR Unmodified 1100.5574 0.5574351 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3 0 1 28.012 28.012 2 0.010583 6576 TMT1-2 83.438 41.363 23.307 45.043 12.059 30.326 34.686 45.914 22 44 15 29 36 44 1 1 1 1 1 1 2278.9 15247 1833 15052 23368 30323 30323 1 QLALDHFK Unmodified 970.52362 0.52361577 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 7 0 1 48.119 48.119 3 0.0066934 12758 TMT1-6 78.939 23.498 184.44 207.6 203.48 135.26 183.2 180.26 174 210 206 138 187 174 1 1 1 1 1 1 12342 15248 2007 15053 23369 30324 30324 1 QLALWNPK Unmodified 968.54435 0.54435122 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 9 0 2 59.34 59.34 2;3 0.0039027 15426 TMT1-8 73.26 40.172 754.35 892.32 862.23 585.8 931.53 813.43 712 900 874 599 943 788 5 5 5 5 5 5 88842 15249 2913 15054 23370;23371 30325;30326;30327;30328;30329 30328 5 QLAPIWDK Unmodified 969.52837 0.5283668 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 7.5 0.5 1 1 60.039 60.039 2 0.001329 17373 TMT1-6 107.47 93.957 207.67 243.79 236.2 296.63 274.61 226.68 196 246 245 289 283 220 1 1 1 1 1 1 40524 15250 530 15055 23372;23373 30330;30331 30330 2 QLAQYHAK Unmodified 957.50321 0.50321468 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 6 0 1 32.756 32.756 3 0.0066297 7308 TMT1-5 51.346 32.566 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15251 1683 15056 23374 30332 30332 1 QLAVLTELPFVVPFEER Unmodified 1986.0826 0.082614002 1848 Q15386 UBE3C Ubiquitin-protein ligase E3C yes yes 0 0 0 0 0 7 0 1 92.432 92.432 3 0.0023964 29966 TMT1-6 56.424 41.465 7.3654 22.826 5.1218 23.47 14.37 7.052 7 22 7 22 15 7 1 1 1 1 1 1 2640.3 15252 1848 15057 23375 30333 30333 1 QLCCCSVGK Unmodified 1110.462 0.46201985 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3;Q9NS15-2;Q9NS15 LTBP1;LTBP3 Latent-transforming growth factor beta-binding protein 1;Latent-transforming growth factor beta-binding protein 3 yes no 0 0 0 0 0 7 0 1 39.677 39.677 3 0.012069 9425 TMT1-6 64.297 20.489 60.763 140.59 128.13 109.38 112.69 105.52 58 138 131 109 116 102 1 1 1 1 1 1 7685.4 15253 1797 15058 23376 30334 30334 1 QLCDNAGFDATNILNK Unmodified 1792.8414 0.84139745 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 6 0 1 65.227 65.227 3 0.00069109 20183 TMT1-5 67.646 40.617 129.86 189.07 195.72 73.349 128.99 135.97 123 189 195 80 131 131 1 1 1 1 1 1 18551 15254 2496 15059 23377 30335 30335 1 QLDETNALLR Unmodified 1171.6197 0.619701 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 50.341 50.341 2 0.0015924 14378 TMT1-3 102.06 59.197 161.94 217.85 190.68 168.56 138.45 190.06 153 218 196 167 146 182 2 2 2 2 2 2 19379 15255 251 15060 23378 30336;30337 30336 2 QLEADIMDINEIFK Unmodified 1677.8284 0.82837315 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 5 0 1 84.912 84.912 3 0.0081796 27754 TMT1-4 54.234 40.518 15.779 29.32 28.219 29.627 20.61 30.326 15 29 29 29 22 29 1 1 1 1 1 1 4697.3 15256 147 15061 23379 30338 30338 1 QLEAIDQLHLEYAK Unmodified 1669.8675 0.86753585 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 5.5 0.5 1 1 60.523 60.523 3 1.8315E-05 18110 TMT1-4 94.544 66.881 431.23 579.8 429.53 409.62 511.87 476.82 407 579 448 407 523 461 3 3 3 3 3 3 65829 15257 195 15062 23380;23381 30339;30340;30341 30339 3 QLEDELVSLQK Unmodified 1300.6874 0.68744622 593 P09493-3;P09493-10 no no 0 0 0 0 0 4 0 1 64.139 64.139 3 0.00012607 19827 TMT1-3 102.4 46.948 76.629 138.86 167.97 89.915 149.7 150.3 73 138 167 94 152 145 1 1 1 1 1 1 21012 15258 593 15063 23382 30342 30342 1 QLEEAEEEAQR Unmodified 1330.6001 0.60008777 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 1.67 0.471 1 2 38.423 38.423 2;3 3.495E-08 10308 TMT1-1 152.96 104.52 69.29 144.03 206.14 125.75 157.51 149.01 66 143 204 129 161 144 2 3 3 3 3 3 186860 15259 1019 15064 23383;23384;23385 30343;30344;30345 30344 3 QLEEANDLLR Unmodified 1199.6146 0.61461563 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 2 0 1 52.504 52.504 2 0.031504 15922 TMT1-1 69.979 33.286 15.539 59.951 42.689 27.917 65.695 59.953 15 58 44 29 66 58 1 1 1 1 1 1 4257.9 15260 1708 15065 23386 30346 30346 1 QLEEDIAAK Unmodified 1015.5186 0.51858998 595 P09493-8 no no 0 0 0 0 0 2.33 0.471 2 1 48.947 48.947 2;3 0.001252 14705 TMT1-2 122.13 60.136 323.03 411.58 362.98 272.1 479.92 342.35 305 413 371 277 482 334 4 4 4 4 4 4 51892 15261 595 15066 23387;23388;23389 30347;30348;30349;30350 30349 4 QLEEDLYDGQVLQK Unmodified 1676.8257 0.82573061 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 3.2 0.748 1 2 2 63.067 63.067 2;3 4.045E-36 19273 TMT1-3 173.6 141.08 221.15 391.73 370.41 289.33 353.94 363 210 388 377 291 363 350 4 4 4 4 4 4 210370 15262 2682 15067 23390;23391;23392;23393;23394 30351;30352;30353;30354;30355 30355 5 QLEEEQQALQK Unmodified 1342.6729 0.67285879 551;552 P07951;CON__Q3SX28;P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 0 2.5 0.5 1 1 46.107 46.107 3 3.4713E-05 13603 TMT1-2 109.39 89.627 238.99 250.86 195.99 190.39 239.73 257.53 225 254 204 189 246 248 3 3 3 3 3 3 35809 + 15263 551;552 15068 23395;23396 30356;30357;30358 30357 3 QLEELEEEFCR Unmodified 1480.6504 0.65040879 2325 Q92888;Q92888-3;Q92888-2 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 2 0 1 66.08 66.08 3 1.1675E-05 21109 TMT1-1 92.19 74.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15264 2325 15069 23397 30359 30359 1 QLEEQLR Unmodified 914.48214 0.48214489 595;593;592 P09493-2;P09493-3;P09493-10;P09493-8 no no 0 0 0 0 0 2.5 0.5 1 1 37.898 37.898 2 0.018692 10380 TMT1-2 98.629 27.334 468.07 551.5 573.57 416.22 576.35 448.33 442 557 580 422 584 436 4 4 4 4 4 4 194310 15265 592;593;595 15070 23398;23399 30360;30361;30362;30363 30362 4 QLEESVDALSEELVQLR Unmodified 1957.0004 0.0004005156 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 3 0 1 83.826 83.826 3 0.00098226 28245 TMT1-2 63.918 50.086 0 15.854 6.3116 6.9858 15.369 0 0 15 7 7 15 0 0 1 1 1 1 0 1161.3 15266 998 15071 23400 30364 30364 1 QLEIHSPDAK Unmodified 1136.5826 0.58258722 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 0 0 0 0 5 0 1 39.638 39.638 3 0.0089262 9903 TMT1-4 43.68 29.261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15267 1740 15072 23401 30365 30365 1 QLELENLTTQETR Unmodified 1573.7948 0.79476484 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 3 0 1 55.359 55.359 3 0.00042374 17373 TMT1-2 63.709 37.991 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15268 771 15073 23402 30366 30366 1 QLEQVIAK Unmodified 927.53893 0.53893149 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 6 0 1 49.767 49.767 2 7.1555E-05 13997 TMT1-5 157.68 12.044 921.02 1643.9 1247.8 954.64 1659 1616.7 873 1623 1288 970 1681 1561 2 2 2 2 2 2 462340 15269 437 15074 23403 30367;30368 30367 2 QLETVLDDLDPENALLPAGFR Unmodified 2325.1852 0.18524117 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 5 0 1 91.123 91.123 3 3.1323E-10 30090 TMT1-4 93.5 84.791 30.73 44.283 27.57 22.372 36.355 38.405 29 44 29 22 37 37 2 2 2 1 2 2 15047 15270 2788 15075 23404 30369;30370 30370 2 QLEVLAQQIATLCATLQEYPAIR Unmodified 2628.3945 0.39452244 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 9 0 2 97.806 97.806 3;4 4.6105E-22 30230 TMT1-8 107.74 93.677 14.816 22.145 15.792 16.114 36.372 46.293 14 22 15 15 37 44 2 2 1 1 3 2 20881 15271 1878 15076 23405;23406 30371;30372;30373 30372 3 QLFALSCTAEEQGVLPDDLSGVIR Unmodified 2617.3058 0.30576701 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 5 0 1 81.198 81.198 3 5.0907E-37 26205 TMT1-4 143.31 126.63 15.806 21.841 29.988 0 0 30.914 15 22 29 0 0 29 1 1 1 0 0 1 27049 15272 480 15077 23407 30374 30374 1 QLFDQVVK Unmodified 975.53893 0.53893149 894;720;1015 P26038;P15311;P35241;P35241-5 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 0 6.5 0.5 1 1 57.479 57.479 2 0.0045535 16544 TMT1-6 124.23 48.851 463.44 651.21 546.85 493.56 558.81 611.93 438 650 564 491 576 589 2 2 2 2 2 2 160850 15273 894;720;1015 15078 23408;23409 30375;30376 30376 2 QLFHPEQLITGK Unmodified 1409.7667 0.76669959 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 4.5 3.5 1 1 59.224 59.224 3 3.9592E-09 16981 TMT1-7 141.58 0 3548.3 5390.1 4470.5 3130.8 5334.8 4059.5 3357 5361 4576 3200 5371 3951 3 3 3 3 3 3 542480 15274 622;1491;2068;2510;1492;2783 15079 23410;23411 30377;30378;30379 30378 3 QLFHPEQLITGKEDAANNYAR Unmodified 2414.1979 0.19787154 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 1 6.5 0.5 1 1 56.543 56.543 4 2.3683E-10 16749 TMT1-5 97.457 77.201 850.19 1136.3 776.86 705.46 709.41 1243 802 1134 814 700 750 1185 4 4 4 4 4 4 166640 15275 622;1491;2068;2510;1492;2783 15080 23412;23413 30380;30381;30382;30383 30381 4 QLFLQTYAR Unmodified 1138.6135 0.61349341 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 55.284 55.284 2 0.0251 13859 TMT1-8 70.908 22.405 68.777 102.62 75.739 96.914 69.851 59.835 65 102 80 94 73 58 1 1 1 1 1 1 9053.2 15276 1287 15081 23414 30384 30384 1 QLFSSLFSGILK Unmodified 1338.7547 0.75473792 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 86.489 86.489 2 0.021168 26095 TMT1-8 59.57 16.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15277 1507 15082 23415 30385 30385 1 QLGENFSGIYCSLLPLGCWSADSQR Unmodified 2857.3163 0.31634848 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 8 0 1 86.424 86.424 3 0.0011659 27777 TMT1-7 46.307 44.425 15.97 6.1073 15.783 0 15.69 0 15 7 15 0 15 0 1 1 1 0 1 0 3837.8 15278 692 15083 23416 30386 30386 1 QLGFEEVSELQGDPGYPLGR Unmodified 2190.0593 0.059312378 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 4 0 1 71.048 71.048 3 0.000227 22520 TMT1-3 62.167 47.005 23.372 21.48 21.058 30.065 20.04 46.332 22 22 22 29 22 44 1 1 1 1 1 1 14016 15279 817 15084 23417 30387 30387 1 QLGGGYYVFPGASHNR Unmodified 1721.8274 0.82740237 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 7.5 0.5 1 1 48.723 48.723 3 0.00091269 13036 TMT1-6 66.022 52.163 316.96 269.32 241.25 185.08 320.22 418.33 298 277 247 188 328 401 2 2 2 2 2 2 21386 15280 3006 15085 23418;23419 30388;30389 30388 2 QLGGSVELVDIGK Unmodified 1313.7191 0.7190807 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5.5 0.5 1 1 62.924 62.924 3 6.7604E-05 19209 TMT1-5 96.464 84.406 214.95 282.57 242.33 154.63 250.59 232.7 203 283 247 159 254 225 2 2 2 2 2 2 20100 15281 2434 15086 23420;23421 30390;30391 30391 2 QLGLDQGILLNWTK Unmodified 1597.8828 0.88279198 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 9 0 1 77.622 77.622 3 0.00024208 22660 TMT1-8 69.729 36.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15282 1275 15087 23422 30392 30392 1 QLHDEAR Unmodified 867.41988 0.41987898 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 1.5 0.5 1 1 19.043 19.043 3 4.9745E-13 3351 TMT1-1 183.9 99.656 95.523 86.54 102.58 71.765 101.56 114.36 90 89 103 73 104 110 5 5 5 5 5 5 14813 15283 776 15088 23423;23424 30393;30394;30395;30396;30397 30394 5 QLICDPSYIPDR Unmodified 1475.7079 0.70786408 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 4 0 1 55.26 55.26 3 0.00041886 16287 TMT1-3 86.772 65.543 54.343 34.055 35.004 36.609 34.69 37.386 51 36 36 36 36 36 1 1 1 1 1 1 12869 15284 972 15089 23425 30398 30398 1 QLICDPSYVK Unmodified 1221.6064 0.60635913 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 6 0 1 52.755 52.755 3 0.00050051 15232 TMT1-5 98.898 65.899 114.9 222.63 157.73 154.08 141.26 158 109 219 165 152 147 152 1 1 1 1 1 1 24455 15285 1217 15090 23426 30399 30399 1 QLIIEDPYYGNDSDFETVYQQCVR Unmodified 2951.3284 0.32835295 877 P24666;P24666-3;P24666-2 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 4 0 1 73.933 73.933 3 1.3897E-06 23697 TMT1-3 70.345 62.157 7.3474 15.221 14.593 15.411 6.0709 15.817 7 15 15 15 7 15 1 1 1 1 1 1 6177.5 15286 877 15091 23427 30400 30400 1 QLIKTDISMSMPK Oxidation (M) 1506.7786 0.77858619 623 Q76RE7;P87630;P68635;P68634;P0DSZ8;P0DSZ7 yes no 0 0 1 0 1 7 0 2 46.601 46.601 3 0.0037481 12307 TMT1-6 50.145 22.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15287 623 15092 23428;23429 30401;30402 30402 117 2 QLIVGVNK Unmodified 869.53345 0.53345218 1490 Q5VTE0;P68104;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 8 0 1 50.688 50.688 2 0.0014727 13815 TMT1-7 141.78 67.447 779.9 1329.7 884.91 674.92 1351.1 996.53 738 1313 923 689 1354 971 2 2 2 2 2 2 143070 15288 1490 15093 23430 30403;30404 30403 2 QLLAPVVK Unmodified 866.55894 0.55893865 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 9 0 1 54.98 54.98 2 0.0097929 13702 TMT1-8 91.065 0 53.524 110.56 107.87 71.064 122.07 96.721 51 109 109 73 123 94 1 1 1 1 1 1 9619.7 15289 1723 15094 23431 30405 30405 1 QLLDDEEQLTAK Unmodified 1401.6987 0.69873919 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 3 0 1 58.604 58.604 3 0.00018048 18645 TMT1-2 93.011 56.486 61.139 110.34 90.507 95.92 75.907 98.038 58 109 94 94 80 94 1 1 1 1 1 1 13056 15290 2525 15095 23432 30406 30406 1 QLLDFSQK Unmodified 977.5182 0.51819605 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 1 58.445 58.445 2 0.0066596 16855 TMT1-6 104.17 52.172 68.469 148.18 88.904 80.109 108.06 66.206 65 145 94 80 109 65 1 1 1 1 1 1 7235.2 15291 121 15096 23433 30407 30407 1 QLLEEELAR Unmodified 1099.5873 0.58733824 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 54.192 54.192 2 0.02963 16541 TMT1-1 74.162 41.321 30.586 66.549 32.792 45.197 50.001 36.949 29 65 36 44 51 36 1 1 1 1 1 1 6321.9 15292 1833 15097 23434 30408 30408 1 QLLLTADDR Unmodified 1043.5611 0.56112349 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 4.5 0.5 1 1 49.626 49.626 2 0.00010308 13931 TMT1-4 150.53 76.047 778.21 947.56 771.4 677.53 1049.4 914.53 734 952 797 680 1063 886 3 3 3 3 3 3 142650 15293 459 15098 23435;23436 30409;30410;30411 30411 3 QLLQANPILEAFGNAK Unmodified 1725.9414 0.94136949 1019;1029;2091 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 no no 0 0 0 0 0 7.2 3.12 1 1 3 79.154 79.154 2;3;4 1.0696E-44 23174 TMT1-8 206.58 156.22 538.91 821.2 702.99 564.39 772.61 681.51 510 817 721 568 784 660 9 9 9 9 8 9 429020 15294 1019;1029;2091 15099 23437;23438;23439;23440;23441 30412;30413;30414;30415;30416;30417;30418;30419;30420 30419 9 QLLSFGNPR Unmodified 1030.556 0.55597854 505 P06241-3;P06241-2;P06241 FYN Tyrosine-protein kinase Fyn yes no 0 0 0 0 0 9 0 1 52.822 52.822 2 0.0025488 12905 TMT1-8 108.3 52.586 53.69 94.837 93.236 56.366 78.239 83.047 51 94 94 58 80 80 1 1 1 1 1 1 5704.4 15295 505 15100 23442 30421 30421 1 QLLSPGTALILLEAQAASGFLLDPVR Unmodified 2692.5164 0.51635214 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 2 108.08 108.08 3;4 3.4018E-39 33634 TMT1-8 126.29 112.56 4.2054 9.0189 18.526 8.7038 8.4 20.014 4 9 18 9 9 19 1 2 3 2 2 3 6997.1 15296 1833 15101 23443;23444 30422;30423;30424 30424 3 QLLTLSSELSQAR Unmodified 1444.7886 0.78855725 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 7 0 1 63.073 63.073 3 2.4222E-06 18657 TMT1-6 113.34 100.84 68.898 94.327 62.413 42.874 79.665 59.555 65 94 65 44 80 58 1 1 1 1 1 1 11268 15297 720 15102 23445 30425 30425 1 QLLYDAIK Unmodified 962.54368 0.54368251 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 7 0 1 59.919 59.919 2 0.0051255 17424 TMT1-6 120.15 26.04 77.009 147.47 96.928 94.271 143.23 119.57 73 145 102 94 145 116 1 1 1 1 1 1 9259 15298 2789 15103 23446 30426 30426 1 QLLYLEK Unmodified 905.52222 0.52221879 1660 Q12974;Q12974-4;Q12974-3;Q93096 PTP4A2;PTP4A1 Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1 yes no 0 0 0 0 0 7 0 1 58.04 58.04 2 0.043882 16723 TMT1-6 84.476 38.758 146.39 165.43 142.51 83.378 171.17 204.05 138 167 145 87 174 196 1 1 1 1 1 1 9421.6 15299 1660 15104 23447 30427 30427 1 QLNALNK Unmodified 799.4552 0.45520186 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 7 0 1 42.988 42.988 2 0.001129 10751 TMT1-6 110.35 24.499 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15300 705 15105 23448 30428 30428 1 QLNFLTK Unmodified 862.49125 0.49125301 1700 Q13418;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 9 0 1 57.859 57.859 2 0.0078518 14893 TMT1-8 132.57 63.652 1383.7 1521.3 1494.9 1130.4 1932.2 1467.1 1305 1541 1519 1149 1945 1428 2 2 2 2 2 2 138660 15301 1700 15106 23449 30429;30430 30430 2 QLNHFWEIVVQDGITLITK Unmodified 2253.2158 0.21575344 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 9 0 1 95.911 95.911 4 8.7567E-06 29656 TMT1-8 67.449 48.125 86.253 62.373 58.075 35.608 72.927 52.285 81 65 59 37 73 51 2 2 2 2 2 2 5185.3 15302 676 15107 23450 30431;30432 30432 2 QLNHPNVIK Unmodified 1061.5982 0.5981777 2255 Q8TDX7 NEK7 Serine/threonine-protein kinase Nek7 yes yes 0 0 0 0 0 7 0 1 36.872 36.872 3 0.0046087 8333 TMT1-6 52.867 25.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15303 2255 15108 23451 30433 30433 1 QLNLWSTQFGDAGLR Unmodified 1704.8584 0.85836815 2150 Q8IY22-3;Q8IY22-2;Q8IY22 CMIP C-Maf-inducing protein yes no 0 0 0 0 0 8 0 1 70.027 70.027 3 0.0025648 21496 TMT1-7 63.062 45.396 30.769 35.759 28.104 21.849 27.747 46.112 29 36 29 22 29 44 1 1 1 1 1 1 6888.6 15304 2150 15109 23452 30434 30434 1 QLPAHDQDPSK Unmodified 1234.5942 0.59421454 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 4 0 1 31.893 31.893 3 8.5418E-07 7100 TMT1-3 99.589 83.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15305 2857 15110 23453 30435 30435 1 QLPDAQLLAR Unmodified 1123.635 0.63495714 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 6 0 1 53.887 53.887 2 0.00040946 15661 TMT1-5 118.91 100.13 246.55 194.35 236.2 115.96 234.07 217.18 232 202 235 123 236 210 1 1 1 1 1 1 35144 15306 855 15111 23454 30436 30436 1 QLPFRGDDGIFDDNFIEER Unmodified 2282.0604 0.060375011 223 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 1 4 0 1 69.119 69.119 3 1.371E-06 21792 TMT1-3 85.764 70.601 37.864 96.685 46.537 59.554 56.67 36.759 36 94 51 58 58 36 1 1 1 1 1 1 12836 15307 223 15112 23455 30437 30437 1 QLPLVKPYLR Unmodified 1225.7547 0.75467834 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 9 0 1 54.842 54.842 3 0.0023966 13669 TMT1-8 77.662 43.777 163.16 314.44 263.01 211.97 332.44 300.72 155 310 270 214 337 291 1 1 1 1 1 1 20780 15308 1540 15113 23456 30438 30438 1 QLPSFQTFFAPALDVIR Unmodified 1949.0411 0.041083539 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 0 9 0 1 90.434 90.434 3 1.2065E-08 27665 TMT1-8 90.654 72.516 53.966 65.384 71.82 66.685 62.315 76.04 51 66 73 66 65 73 2 2 2 2 2 2 22322 15309 2363 15114 23457 30439;30440 30440 2 QLQAQDEEGGGHVPERPK Unmodified 1973.9555 0.95551601 1000 P33241-3;P33241 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 1 3.5 0.5 1 1 33.066 33.066 4 3.4846E-10 7517 TMT1-3 108.56 74.162 192.68 301.02 183.17 221.57 307.43 254.53 182 298 196 218 312 247 2 2 2 2 2 2 24632 15310 1000 15115 23458;23459 30441;30442 30442 2 QLQEDAAR Unmodified 929.45666 0.45665842 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 2 0 1 28.387 28.387 2 0.0054545 6366 TMT1-1 117.81 30.978 38.279 35.241 28.824 5.5294 21.461 37.764 36 36 29 7 22 36 1 1 1 1 1 1 2659.8 15311 1546 15116 23460 30443 30443 1 QLQLYEIHGAQK Unmodified 1426.7569 0.75686319 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 6 0 1 47.583 47.583 3 0.00032631 13192 TMT1-5 67.519 43.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15312 1592 15117 23461 30444 30444 1 QLQVVPLFGDMQIELAR Unmodified 1956.0503 0.050268017 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7 0 1 83.962 83.962 3 0.0018284 26863 TMT1-6 59.434 43.799 15.775 29.309 28.912 14.104 30.213 15.128 15 29 29 15 30 15 1 1 1 1 1 1 3052.4 15313 2079;2399 15118 23462 30445 30445 1 QLSESQVK Unmodified 917.48181 0.48181054 1482 P67775;P67775-2 PPP2CA Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform yes no 0 0 0 0 0 5 0 1 36.917 36.917 2 0.024514 8846 TMT1-4 85.731 25.141 61.208 94.342 92.54 71.816 130.67 89.013 58 94 94 73 131 87 1 1 1 1 1 1 7480.2 15314 1482 15119 23463 30446 30446 1 QLSFEEFIMLMAR Unmodified 1613.7946 0.7945706 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 8.5 0.5 2 2 91.836 91.836 2;3 1.2541E-15 27972 TMT1-8 149.93 96.251 77.255 121.17 77.767 73.189 104.5 87.628 73 120 80 73 106 85 4 4 3 4 4 4 33640 15315 509 15120 23464;23465;23466;23467 30447;30448;30449;30450 30449 4 QLSQSLLPAIVELAEDAK Unmodified 1924.0517 0.051707805 956 P30153;P30154-4;P30154;P30154-2;P30154-5;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 0 6 0 1 91.849 91.849 3 5.8065E-06 30260 TMT1-5 83.423 61.62 61.094 122.09 88.161 59.881 81.768 66.957 58 120 91 61 83 65 2 2 2 2 2 2 9841.6 15316 956 15121 23468 30451;30452 30451 2 QLSSGVSEIR Unmodified 1074.5669 0.56693715 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 5 0 1 39.917 39.917 2 0.00083556 10015 TMT1-4 79.986 18.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15317 476 15122 23469 30453 30453 1 QLSSSVTGLTNIEEENCQR Unmodified 2164.0066 0.0066248805 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 55.279 55.279 3 1.8913E-17 16383 TMT1-3 120.74 110.08 38.173 58.692 26.693 21.805 34.565 60.842 36 58 29 22 36 58 1 1 1 1 1 1 12858 15318 1139 15123 23470 30454 30454 1 QLSVEPYSQEEAER Unmodified 1663.7689 0.76894402 75 O00488 ZNF593 Zinc finger protein 593 yes yes 0 0 0 0 0 3 0 1 51.168 51.168 3 0.0010842 15760 TMT1-2 70.963 57.559 84.672 84.778 124.44 70.352 107.45 97.138 80 87 123 73 109 94 1 1 1 1 1 1 21872 15319 75 15124 23471 30455 30455 1 QLTEMLPSILNQLGADSLTSLR Unmodified 2399.273 0.27301032 806 P20290-2;P20290 BTF3 Transcription factor BTF3 yes no 0 0 0 0 0 9 0 1 95.724 95.724 3 1.1582E-08 29511 TMT1-8 70.345 61.683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15320 806 15125 23472 30456 30456 1 QLTFEEIAK Unmodified 1077.5706 0.57062555 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 7 0 1 26.393 26.393 4 0.045786 4484 TMT1-6 41.117 4.4161 708.98 711.82 704.26 712.51 971.08 619.35 668 725 723 707 980 607 1 1 1 1 1 1 17167 15321 2930 15126 23473 30457 30457 1 QLTVGVPK Unmodified 840.5069 0.50690308 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8 0 1 48.377 48.377 2 0.036665 13033 TMT1-7 78.334 62.964 184.06 270.22 214.61 165.56 280.54 259.56 174 269 221 168 284 251 1 1 1 1 1 1 25593 15322 1702 15127 23474 30458 30458 1 QLTWFYTFDQK Unmodified 1475.7085 0.70851601 584 P09326;P09326-2 CD48 CD48 antigen yes no 0 0 0 0 0 9 0 1 75.148 75.148 2 0.00039102 21695 TMT1-8 90.913 56.952 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15323 584 15128 23475 30459 30459 1 QLVEQVEQIQK Unmodified 1340.73 0.72997974 2552 Q9BVK6 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 0 0 0 0 0 5 0 1 55.689 55.689 3 0.019877 16265 TMT1-4 53.252 9.2607 299.91 333.6 347.78 259.38 274.38 343.95 283 338 352 261 285 330 1 1 1 1 1 1 19834 15324 2552 15129 23476 30460 30460 1 QLVHELDEAEYR Unmodified 1500.7209 0.72087161 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 2.5 0.5 1 1 46.903 46.903 3 1.3502E-07 13754 TMT1-1 118.73 94.796 153.92 164.96 140.7 123.91 172.22 149.66 145 167 145 124 175 145 2 2 2 2 2 2 88730 15325 1603 15130 23477;23478 30461;30462 30461 2 QLYNIYAK Unmodified 1011.5389 0.53893149 1903 Q16740 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial yes yes 0 0 0 0 0 8 0 1 53.41 53.41 2 0.038128 14935 TMT1-7 77.923 27.882 53.877 95.357 61.395 66.05 71.014 67.264 51 94 65 65 73 65 1 1 1 1 1 1 5155.5 15326 1903 15131 23479 30463 30463 1 QLYQILTDFDIR Unmodified 1523.7984 0.79839365 796 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 0 7 0 1 83.879 83.879 3 1.4138E-05 26827 TMT1-6 87.001 58.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15327 796 15132 23480 30464 30464 1 QLYVLGHEAMK Unmodified 1287.6645 0.66454271 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 7 0 1 50.158 50.158 3 0.0060502 13571 TMT1-6 66.023 35.817 91.991 146.33 104.51 93.859 141.13 181.46 87 145 109 94 145 174 1 1 1 1 1 1 10277 15328 845 15133 23481 30465 30465 1 QMEQISQFLQAAER Oxidation (M) 1693.8094 0.80936904 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 0 5.5 0.5 2 2 61.579 61.579 2;3 1.2894E-06 18602 TMT1-4 89.232 53.458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15329 1052 15134 23482;23483;23484;23485 30466;30467;30468;30469 30467 200 4 QMEQISQFLQAAER Unmodified 1677.8145 0.81445442 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 7 0.816 2 2 2 70.714 70.714 2;3 5.8738E-27 21668 TMT1-6 185.9 157.11 493.23 538.19 504.51 402.68 585.58 563.19 465 545 515 406 596 544 6 6 6 6 6 6 364450 15330 1052 15134 23486;23487;23488;23489;23490;23491 30470;30471;30472;30473;30474;30475;30476 30473 7 QMFLATWK Unmodified 1023.5212 0.52117293 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 65.326 65.326 2 0.022629 17837 TMT1-8 76.221 35.79 61.507 80.065 54.278 75.527 54.58 76.261 58 80 58 73 58 73 1 1 1 1 1 1 6812.1 15331 1637 15135 23492 30477 30477 1 QMLEALNFLHSK Unmodified 1429.7388 0.73877028 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 9 0 1 67.197 67.197 3 0.00026429 18604 TMT1-8 87.18 52.647 37.858 65.369 74.041 18.675 50.927 45.451 36 65 73 22 51 44 1 1 1 1 1 1 4734.5 15332 325 15136 23493 30478 30478 1 QMQLENVSVALEFLDR Oxidation (M) 1906.9459 0.94586252 831;270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333 FLNB;FLNA Filamin-B;Filamin-A no no 0 0 1 0 0 5 0 1 77.041 77.041 3 0.018715 24583 TMT1-4 52.612 34.016 23.213 36.147 35.371 29.083 26.901 61.06 22 36 36 29 29 58 1 1 1 1 1 1 7498.4 15333 270;831 15137 23494 30479 30479 30 1 QMQLENVSVALEFLDR Unmodified 1890.9509 0.9509479 831;270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333 FLNB;FLNA Filamin-B;Filamin-A no no 0 0 0 0 0 6 0 2 82.164 82.164 2;3 6.562E-20 26844 TMT1-5 155.63 127.54 84.554 108.19 124.41 88.009 98.499 120.85 80 109 125 89 102 116 3 3 3 3 3 3 46283 15334 270;831 15137 23495;23496 30480;30481;30482 30482 3 QMQLENVSVALEFLDRESIK Unmodified 2348.2046 0.20459641 831;270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333 FLNB;FLNA Filamin-B;Filamin-A no no 0 0 0 0 1 6.5 0.5 1 1 79.408 79.408 3;4 1.414E-17 25068 TMT1-6 120.4 104.09 92.256 108.21 92.28 79.736 117.17 227.98 87 109 95 80 123 217 2 2 2 2 2 2 16195 15335 270;831 15138 23497;23498 30483;30484 30484 2 QMSLLLR Unmodified 859.49496 0.49495818 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 9 0 1 53.677 53.677 2 0.01408 13232 TMT1-8 105.25 41.962 217.59 267.59 172.99 152.15 195.25 293.97 205 268 182 152 203 281 1 1 1 1 1 1 26116 15336 888 15139 23499 30485 30485 1 QMVETELK Unmodified 976.48993 0.48993238 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 4 0 1 46.448 46.448 2 0.0026161 12847 TMT1-3 135.79 63.244 138.47 166.95 210.96 173.05 242.15 179.64 131 169 212 174 245 175 1 1 1 1 1 1 19777 15337 1422 15140 23500 30486 30486 1 QMVVLEEEFQNISPEELK Unmodified 2161.0613 0.061286213 215 O60234 GMFG Glia maturation factor gamma yes yes 0 0 0 0 0 4 0 1 78.883 78.883 3 4.43E-06 25602 TMT1-3 67.995 44.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15338 215 15141 23501 30487 30487 1 QNCELFEQLGEYK Unmodified 1656.7454 0.7453718 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 5 0 1 64.895 64.895 3 7.975E-06 19802 TMT1-4 104.9 86.072 379.72 435.26 372.94 301.54 452.17 349.54 358 439 383 304 457 340 2 2 2 2 2 2 111510 + 15339 28 15142 23502 30488;30489 30488 2 QNKLEQVEK Unmodified 1114.5982 0.59823728 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 1 6 0 1 38.941 38.941 3 0.0081347 9735 TMT1-5 76.655 40.696 202.21 378.98 318.45 260.48 425.27 304.47 192 374 327 263 428 297 1 1 1 1 1 1 24402 15340 1148 15143 23503 30490 30490 1 QNLDALLNQLK Unmodified 1268.7089 0.70885036 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 72.328 72.328 3 0.023796 22408 TMT1-7 51.841 19.998 30.68 35.511 43.331 44.706 42.694 37.158 29 36 44 44 44 36 1 1 1 1 1 1 3736.9 15341 1763 15144 23504 30491 30491 1 QNLFQEAEEFLYR Unmodified 1685.8049 0.80493559 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 83.812 83.812 3 1.5907E-16 27252 TMT1-4 167.98 157.61 61.334 95.773 70.066 64.297 136.73 135.74 58 95 73 65 138 131 3 3 3 3 3 3 27206 15342 2907 15145 23505;23506 30492;30493;30494 30492 3 QNLLQAAGNVGQASGELLQQIGESDTDPHFQDALMQLAK Unmodified 4135.028 0.02803561 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.67 0.471 1 2 90.742 90.742 4;5 4.2348E-19 29445 TMT1-6 86.081 73.671 101.57 146.54 117.1 174.34 122.77 181.98 96 146 124 168 131 174 4 4 4 4 4 4 73629 15343 3010 15146 23507;23508;23509 30495;30496;30497;30498 30497 4 QNLSLEEQK Unmodified 1087.551 0.55095274 3095 yes no 0 0 0 0 0 4 0 1 58.47 58.47 3 0.0017622 17612 TMT1-3 61.679 60.482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15344 3095 15147 23510 30499 30499 1 QNQIAVDEIR Unmodified 1184.6149 0.61494998 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 3 0 1 42.345 42.345 2 1.0534E-06 12207 TMT1-2 163.64 95.415 107.94 168.57 110.33 101.5 181.38 125.94 102 167 116 102 182 123 2 2 2 2 2 2 27505 15345 489 15148 23511 30500;30501 30500 2 QNVAVNELCGR Unmodified 1258.6088 0.60881874 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 4.5 0.5 1 1 40.824 40.824 2 7.3478E-68 10718 TMT1-3 253.29 188.53 276.44 331.27 327.18 290.56 425.46 258.62 261 334 334 291 428 254 3 3 3 3 3 3 77686 15346 1881 15149 23512;23513 30502;30503;30504 30503 3 QPAENVNQYLTDPK Unmodified 1615.7842 0.78420015 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4 0 1 53.05 53.05 3 0.00016672 15466 TMT1-3 80.632 61.054 61.226 110.58 75.664 88.725 98.723 113.38 58 109 80 87 102 109 1 1 1 1 1 1 16327 15347 845 15150 23514 30505 30505 1 QPAVEEPAEVTATVLASR Unmodified 1866.9687 0.96870646 995 P32942 ICAM3 Intercellular adhesion molecule 3 yes yes 0 0 0 0 0 3 0 1 62.324 62.324 3 2.8828E-05 20109 TMT1-2 57.496 41.553 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15348 995 15151 23515 30506 30506 1 QPELQISER Unmodified 1098.5669 0.56693715 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 3 0 1 41.453 41.453 2 0.034409 11842 TMT1-2 72.243 35.052 68.623 93.563 109.2 62.377 114.85 105.45 65 94 109 65 116 102 1 1 1 1 1 1 14442 15349 3006 15152 23516 30507 30507 1 QPVFGANYIK Unmodified 1135.6026 0.60259438 2350 Q969T9;Q969T9-2 WBP2 WW domain-binding protein 2 yes no 0 0 0 0 0 8 0 1 55.284 55.284 2 0.00046869 15665 TMT1-7 116.37 57.304 92.261 108.22 91.557 95.947 129.27 97.581 87 109 95 95 131 95 2 2 2 2 2 2 6272.3 15350 2350 15153 23517 30508;30509 30508 2 QPVLSQTEAR Unmodified 1127.5935 0.59348625 925 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 0 0 0 4 0 1 34.602 34.602 2 0.012258 8168 TMT1-3 81.017 38.622 54.25 42.43 43.554 27.718 73.546 44.805 51 44 44 29 73 44 1 1 1 1 1 1 5389.6 15351 925 15154 23518 30510 30510 1 QPVSGAVEGK Unmodified 970.50836 0.50835964 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 5 0 1 37.163 37.163 2 0.014508 8926 TMT1-4 78.692 5.4438 61.48 63.8 72.644 49.488 102.4 58.906 58 65 73 51 102 58 1 1 1 1 1 1 6932.7 15352 372 15155 23519 30511 30511 1 QPVSGAVEGKEELPDENK Unmodified 1924.9378 0.93780026 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 1 3 0 1 46.248 46.248 4 6.5442E-08 13787 TMT1-2 98.269 82.15 115.87 67.769 125 77.143 151.35 119.34 109 73 123 80 152 116 1 1 1 1 1 1 7082.7 15353 372 15156 23520 30512 30512 1 QQAHDLLINKPDGTFLLR Unmodified 2078.1273 0.12727278 1253;1093 P42229;P42229-2;P51692 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B no no 0 0 0 0 1 8 0 1 57.263 57.263 4 0.0018846 16437 TMT1-7 54.368 39.446 161.61 157.39 116.55 140.95 155.99 142.66 152 160 123 138 160 138 1 1 1 1 1 1 15705 15354 1093;1253 15157 23521 30513 30513 1 QQDHFFQAAFLEER Unmodified 1764.822 0.82198264 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 4.33 0.471 2 1 57.934 57.934 3 3.6681E-05 17181 TMT1-3 90.754 82.577 1815.2 2859.5 2318.5 1777.1 2308.2 2750.5 1718 2839 2383 1792 2375 2642 3 3 3 3 3 3 227070 15355 567 15158 23522;23523;23524 30514;30515;30516 30514 3 QQDVLGFLEANK Unmodified 1360.6987 0.69867961 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 0 6 0 1 69.968 69.968 3 9.1546E-09 22067 TMT1-5 130.1 25.854 176.36 246.46 266.67 195.47 152.12 182.21 167 247 269 196 160 175 2 2 2 2 2 2 34114 15356 269 15159 23525 30517;30518 30518 2 QQEAALELEELK Unmodified 1399.7195 0.71947463 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 2.5 0.5 1 1 61.141 61.141 3 1.2517E-05 19553 TMT1-2 108.32 63.76 124.11 112.64 144.31 116.61 141.95 127.07 117 116 145 117 145 123 3 3 3 3 3 3 21276 15357 1597 15160 23526;23527 30519;30520;30521 30520 3 QQEAALELEELKK Unmodified 1527.8144 0.81443765 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 5 0 1 55.448 55.448 3 4.3233E-08 16147 TMT1-4 119.45 77.802 268.86 288.43 374.11 364.16 431.47 381.04 254 294 378 361 441 369 1 1 1 1 1 1 29419 15358 1597 15161 23528 30522 30522 1 QQELTHQEHR Unmodified 1304.6222 0.62216062 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 2 0.707 1 2 1 19.379 19.379 3;4 7.8179E-06 3386 TMT1-1 148.19 137.27 112.38 127.68 119.37 98.941 114.4 100.14 106 129 122 99 117 97 6 6 6 6 6 6 17978 15359 776 15162 23529;23530;23531;23532 30523;30524;30525;30526;30527;30528 30524 6 QQFHDAK Unmodified 872.41407 0.41406533 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 27.644 27.644 3 0.007332 5181 TMT1-4 87.181 46.83 92.284 92.102 101.2 71.3 130.69 89.013 87 94 102 73 131 87 1 1 1 1 1 1 4623.7 15360 902 15163 23533 30529 30529 1 QQHIEQLLAER Unmodified 1363.7208 0.72081203 965;2851 Q9UDT6-2;Q9UDT6;P30622-2;P30622-1;P30622 CLIP2;CLIP1 CAP-Gly domain-containing linker protein 2;CAP-Gly domain-containing linker protein 1 no no 0 0 0 0 0 5 0 1 44.041 44.041 3 0.030513 11669 TMT1-4 49.423 23.485 46.254 88.004 86.445 48.842 92.986 90.089 44 87 87 51 94 87 1 1 1 1 1 1 7705.4 15361 2851;965 15164 23534 30530 30530 1 QQILLSFK Unmodified 975.57532 0.57531699 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 9 0 1 62.673 62.673 2 0.0070792 16773 TMT1-8 104.06 51.654 146.31 177.09 145.58 168.74 271.69 208.65 138 178 152 167 274 203 1 1 1 1 1 1 17766 15362 1234 15165 23535 30531 30531 1 QQIQSIQQSIER Unmodified 1456.7634 0.76340513 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 0 5 0 1 47.291 47.291 2 1.7627E-06 12955 TMT1-4 116.84 63.748 46.827 34.555 35.367 28.634 50.762 36.927 44 36 36 29 51 36 1 1 1 1 1 1 10457 15363 1323 15166 23536 30532 30532 1 QQIYCWATWK Unmodified 1382.6441 0.64414162 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 9 0 1 65.318 65.318 3 3.6951E-05 17826 TMT1-8 126.71 84.677 68.595 109.67 100.3 70.521 174.95 111.2 65 109 102 73 174 109 1 1 1 1 1 1 12738 15364 772 15167 23537 30533 30533 1 QQLAEEEAR Unmodified 1072.5149 0.51490158 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 2 0 1 31.376 31.376 2 0.0001104 7542 TMT1-1 117.7 68.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15365 1916 15168 23538 30534 30534 1 QQLETEK Unmodified 874.43961 0.43961137 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 3 0 1 34.601 34.601 2 0.023225 9123 TMT1-2 95.099 22.551 69.272 32.769 51.659 27.101 80.647 52.065 65 36 51 29 80 51 1 1 1 1 1 1 5232.8 15366 720 15169 23539 30535 30535 1 QQLLIGAYAK Unmodified 1103.6339 0.63389451 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 8.5 0.5 1 1 56.645 56.645 2 2.6866E-06 16211 TMT1-7 157.91 110.17 122.95 159.95 119.81 93.035 136.47 104.84 116 160 124 94 138 102 2 2 2 2 2 2 20724 15367 2496 15170 23540;23541 30536;30537 30536 2 QQLSAEELDAQLDAYNAR Unmodified 2033.9654 0.96541199 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 0 3 0 2 61.129 61.129 3 3.2001E-19 19589 TMT1-2 114.99 105.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15368 2113 15171 23542;23543 30538;30539 30538 2 QQLTGHSK Unmodified 897.46683 0.46682918 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.2 2.79 1 1 1 1 1 25.645 25.645 3 0.0010802 4187 TMT1-8 105.98 33.775 825.86 511.29 708.18 638.5 1058.5 427.11 776 544 713 641 1054 429 8 8 8 8 8 8 133000 15369 3010 15172 23544;23545;23546;23547;23548 30540;30541;30542;30543;30544;30545;30546;30547 30546 8 QQNPGHTLEAGWFLLR Unmodified 1865.9537 0.95366552 1246 P51606 RENBP N-acylglucosamine 2-epimerase yes yes 0 0 0 0 0 8 0 1 62.316 62.316 3 1.156E-07 18466 TMT1-7 103.66 77.926 61.48 63.801 72.611 50.224 63.365 67.482 58 65 73 51 65 65 1 1 1 1 1 1 8589.5 15370 1246 15173 23549 30548 30548 1 QQPGPSEHIER Unmodified 1276.616 0.61601261 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 2.67 1.7 1 1 1 25.114 25.114 3 3.0261E-08 5146 TMT1-1 153.25 152.91 141.08 175.67 124.46 124.52 191.26 142.72 133 176 129 124 193 139 5 5 4 5 5 5 25714 15371 1225 15174 23550;23551;23552 30549;30550;30551;30552;30553 30550 5 QQQLLNEENLR Unmodified 1383.7106 0.71064128 2761 Q9NVI7-2;Q9NVI7;Q9NVI7-3;Q5T9A4;Q5T9A4-3;Q5T9A4-2 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 0 0 0 0 0 3 0 1 44.619 44.619 2 0.0066205 13172 TMT1-2 83.775 40.282 0 22.819 35.215 53.144 26.601 37.617 0 22 36 51 29 36 0 1 1 1 1 1 6347 15372 2761 15175 23553 30554 30554 1 QQQLTAMK Unmodified 946.4906 0.49060109 1019;1029 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 0 0 0 6.5 0.5 1 1 40.697 40.697 2 0.0040999 9930 TMT1-6 127.46 73.907 320.56 324.31 310.74 275.15 483.09 428.6 302 330 318 277 488 415 2 2 2 2 2 2 43705 15373 1019;1029 15176 23554;23555 30555;30556 30556 2 QQQSPASIEMGLIIR Unmodified 1669.8821 0.88214006 3085 yes yes 0 0 0 0 0 2 0 1 54.913 54.913 3 0.0040917 16851 TMT1-1 43.184 3.1175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15374 3085 15177 23556 30557 30557 1 QQQYADLLSHDQLLTER Unmodified 2057.0178 0.017781914 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 4 0 1 57.353 57.353 3 1.6537E-05 17157 TMT1-3 81.003 64.64 77.274 101.8 90.965 95.312 106.81 82.232 73 102 94 94 109 80 1 1 1 1 1 1 7963.8 15375 2320 15178 23557 30558 30558 1 QQSEEDLLLQDFSR Unmodified 1706.8111 0.81114318 2929 Q9UNL2;Q9UNL2-2 SSR3 Translocon-associated protein subunit gamma yes no 0 0 0 0 0 2 0 2 65.739 65.739 2;3 0.00011867 20973 TMT1-1 75.764 52.088 15.866 29.563 13.365 22.709 28.754 46.083 15 29 15 22 30 44 1 1 1 1 1 1 7265.3 15376 2929 15179 23558;23559 30559;30560 30560 2 QQSELQSQVR Unmodified 1201.6051 0.60511357 1801 Q14847;Q14847-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 3 0 1 30.791 30.791 2 1.6894E-29 7669 TMT1-2 216.26 153.29 69.055 79.653 48.485 35.244 64.567 52.524 65 80 51 36 65 51 1 1 1 1 1 1 8857.7 15377 1801 15180 23560 30561 30561 1 QQSNEHLR Unmodified 1010.4894 0.48935553 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 2.5 0.5 1 1 17.314 17.314 3 0.00027591 3248 TMT1-1 142.04 89.561 6.3466 9.019 7.7221 8.0987 9.8414 7.1812 6 9 8 8 10 7 2 2 2 2 2 2 1310.4 15378 195 15181 23561;23562 30562;30563 30562 2 QQYESVAAK Unmodified 1022.5033 0.50327426 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 4 0 2 37.715 37.715 2;3 9.6687E-09 9393 TMT1-3 170.95 89.626 494.5 1171.9 655.23 537.87 997.43 725.2 470 1143 695 545 1001 707 2 2 2 2 2 2 274970 15379 575 15182 23563;23564 30564;30565 30564 2 QQYLQSIEER Unmodified 1292.6361 0.63607935 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 0 3 0 1 47.462 47.462 2 6.2487E-06 14265 TMT1-2 120.65 69.818 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15380 834 15183 23565 30566 30566 1 QQYTNQLAK Unmodified 1092.5564 0.55637247 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 6 0 1 39.599 39.599 2 1.4226E-05 10025 TMT1-5 128.86 84.104 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15381 147 15184 23566 30567 30567 1 QRDELIEK Unmodified 1029.5455 0.54547343 3041 Q9Y608-4;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 1 4 0 1 35.711 35.711 3 0.00471 8620 TMT1-3 73.841 28.819 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15382 3041 15185 23567 30568 30568 1 QREAEATAK Phospho (STY) 1082.4758 0.47575268 2845 Q9UBR4;Q9UBR4-2 LHX3 LIM/homeobox protein Lhx3 yes no 0 0 0 1 1 9 0 1 101.96 101.96 2 0.032249 31814 TMT1-8 45.359 15.55 92.065 138.98 98.337 72.368 82.963 137.28 87 138 102 73 87 131 1 1 1 1 1 1 10916 15383 2845 15186 23568 30569 30569 21 1 QRQELEK Unmodified 929.49304 0.49304393 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3.5 0.5 1 1 26.871 26.871 3 0.016817 5203 TMT1-3 82.452 18.967 327.19 581.62 422.2 340.57 545.66 468.39 310 574 438 344 552 454 2 2 2 2 2 2 35369 15384 1019 15187 23569;23570 30570;30571 30571 2 QSACNLEK Unmodified 948.43348 0.43348014 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.5 0.5 1 1 33.96 33.96 2;3 0.0010964 7586 TMT1-4 115.86 57.435 655.34 828.11 965.74 788.74 1203.3 759.83 620 835 974 795 1210 745 4 4 4 4 4 4 128330 15385 1019 15188 23571;23572 30572;30573;30574;30575 30574 4 QSGEAFVELGSEDDVK Unmodified 1708.7792 0.77917435 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 2.5 0.5 1 1 58.077 58.077 3 1.1866E-07 18132 TMT1-1 103.63 83.253 100.85 107.66 90.523 94.663 142.67 135.57 95 109 94 94 145 131 2 2 2 2 2 2 25180 15386 1271 15189 23573;23574 30576;30577 30576 2 QSGLYFIK Unmodified 954.51747 0.51746776 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 8 0 1 57.793 57.793 2 0.0059419 16650 TMT1-7 111.95 34.273 146.48 149.49 141.35 130.95 202.24 179.71 138 152 145 131 205 174 1 1 1 1 1 1 32154 15387 439 15190 23575 30578 30578 1 QSGLYFIKPLK Unmodified 1292.7493 0.74925861 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 9 0 2 59.438 59.438 3;4 0.00015595 15477 TMT1-8 97.214 73.978 642.78 730.23 633.92 744.15 732.31 981.14 606 737 660 728 765 940 3 3 3 3 3 3 365290 15388 439 15191 23576;23577 30579;30580;30581 30579 3 QSISNSESGPR Unmodified 1160.5422 0.54217896 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 3 0 1 26.164 26.164 2 3.1348E-08 5858 TMT1-2 155.33 93.227 19.046 33.551 16.562 18.06 33.318 10.775 18 33 18 18 33 11 1 1 1 1 1 1 4820.1 15389 477 15192 23578 30582 30582 1 QSLETICLLLAYK Unmodified 1550.8378 0.83781563 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 9 0 1 81.888 81.888 3 0.0034729 24260 TMT1-8 58.268 32.33 46.708 50.412 42.017 52.315 49.124 52.964 44 51 44 51 51 51 1 1 1 1 1 1 10187 15390 1044;1413;1414 15193 23579 30583 30583 1 QSLGELIGTLNAAK Unmodified 1413.7827 0.78274359 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 8.5 0.5 1 1 71.621 71.621 3 1.2263E-10 22068 TMT1-7 125.22 83.134 268.94 395.49 271 275.77 459.93 401.55 254 393 285 275 465 389 2 2 2 2 2 2 89105 15391 1352 15194 23580;23581 30584;30585;30586 30584 3 QSLPPGLAVK Unmodified 1008.5968 0.59678072 1473 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 0 8 0 1 51.79 51.79 2 8.1103E-05 14314 TMT1-7 98.04 69.822 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15392 1473 15195 23582 30587 30587 1 QSNNEANLREEVLK Unmodified 1642.8275 0.82746195 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 3 0 1 42.004 42.004 3 0.001138 12104 TMT1-2 61.657 22.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15393 2267 15196 23583 30588 30588 1 QSPVDIDTHTAK Unmodified 1310.6466 0.64664404 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 4 0 1 38.887 38.887 3 8.5239E-06 9932 TMT1-3 111.12 63.112 451.16 516.69 560.16 401.61 407.5 541.63 426 523 565 405 425 519 2 2 2 2 2 2 70773 15394 406 15197 23584 30589;30590 30590 2 QSTNAYPDLR Unmodified 1163.5571 0.55710075 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 3 0 1 38.046 38.046 2 0.00031597 10520 TMT1-2 123.51 80.915 61.765 41.929 43.222 34.986 94.943 51.657 58 44 44 36 94 51 1 1 1 1 1 1 10332 15395 529 15198 23585 30591 30591 1 QSTSFLVLQEILESEEK Unmodified 1979.0099 0.0099025694 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 5 0 1 83.466 83.466 3 7.6296E-10 27087 TMT1-4 108.34 84.149 92.354 108.48 75.621 88.997 84.361 74.345 87 109 80 87 87 72 2 2 2 2 2 2 13218 15396 41 15199 23586 30592;30593 30592 2 QTAAQLILK Unmodified 984.59678 0.59678072 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 8 0 1 54.325 54.325 2 0.0012801 15349 TMT1-7 121.73 43.398 161.01 308.09 269.71 216.12 323.15 230.63 153 304 276 218 326 225 2 2 2 2 2 2 23545 15397 268 15200 23587 30594;30595 30595 2 QTALVELVK Unmodified 999.59645 0.59644637 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 6.5 0.5 1 1 58.647 58.647 2 0.00043112 16933 TMT1-6 137.98 76.014 588.33 791.01 718.31 498.6 910 856.68 556 792 731 511 920 828 3 3 3 3 3 3 140050 + 15398 28 15201 23588;23589 30596;30597;30598 30598 3 QTAQQIVSHVQNK Unmodified 1479.7794 0.77938954 2795 Q9NZB2-4;Q9NZB2;Q9NZB2-6;Q9NZB2-5;Q9NZB2-2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 0 0 7 0 1 41.912 41.912 3 0.0001995 10344 TMT1-6 88.224 68.647 46.555 73.733 47.868 59.619 49.045 45.504 44 73 51 58 51 44 1 1 1 1 1 1 4844.8 15399 2795 15202 23590 30599 30599 1 QTATQLLK Unmodified 901.52328 0.52328142 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 7 0 1 45.36 45.36 2 0.0013163 11685 TMT1-6 107.15 23.889 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15400 1438 15203 23591 30600 30600 1 QTESTSFLEK Unmodified 1168.5612 0.56118307 1361 P60900;P60900-2;P60900-3 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 0 5 0 2 48.266 48.266 2;3 7.4628E-05 13345 TMT1-4 106.67 35.166 84.539 76.853 153.54 132.19 97.787 82.49 80 80 152 131 102 80 1 1 1 1 1 1 12164 15401 1361 15204 23592;23593 30601;30602 30602 2 QTFPFPTIYEGEK Unmodified 1555.7559 0.75586013 2523 Q9BSF0 C2orf88 Small membrane A-kinase anchor protein yes yes 0 0 0 0 0 7 0 1 68.404 68.404 3 0.010552 20798 TMT1-6 54.95 32.23 77.142 108.98 107.13 87.148 82.833 121.29 73 109 109 87 87 116 1 1 1 1 1 1 8137.6 15402 2523 15205 23594 30603 30603 1 QTHLEGALEQEHSR Unmodified 1633.7808 0.78084611 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 3 0.816 1 1 1 30.266 30.266 3;4 2.7166E-17 7369 TMT1-2 149.3 127.52 184.36 191.16 232.38 164.42 226.58 279.22 174 195 233 167 233 268 4 4 4 4 4 4 54605 15403 1684 15206 23595;23596;23597 30604;30605;30606;30607 30605 4 QTIAGDFEYFLNLNSR Unmodified 1886.9163 0.91627696 1730 Q13618;Q13618-2;Q13618-3 CUL3 Cullin-3 yes no 0 0 0 0 0 7 0 1 82.868 82.868 3 0.0058094 26439 TMT1-6 53.188 25.539 15.661 52.736 28.245 21.826 28.554 22.637 15 51 30 22 29 22 1 1 1 1 1 1 3371 15404 1730 15207 23598 30608 30608 1 QTLEEELFGNNEESPAFK Unmodified 2080.9589 0.95892963 2004 Q684P5-3;Q684P5-2;Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 yes no 0 0 0 0 0 4 0 1 72.159 72.159 3 8.4279E-07 22987 TMT1-3 90.718 76.557 76.544 55.334 72.753 56.731 123.74 97.739 72 58 73 58 124 95 2 2 2 2 2 2 6777.4 15405 2004 15208 23599 30609;30610 30610 2 QTLENER Unmodified 888.43011 0.43010932 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 1.5 0.5 1 1 26.179 26.179 2 0.0024757 5516 TMT1-1 141.93 28.232 122.43 204.91 169.3 135.98 253.33 147.34 116 203 174 138 253 145 1 1 1 1 1 1 19165 15406 1019 15209 23600;23601 30611;30612 30612 2 QTLENERGELANEVK Unmodified 1728.8642 0.86424139 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3 0.707 1 2 1 43.876 43.876 3;4 8.6556E-19 12905 TMT1-2 157.91 114.45 2589.9 3713.8 3212.6 2643.4 3447.4 3657.1 2449 3705 3296 2653 3532 3523 6 6 6 6 6 6 625540 15407 1019 15210 23602;23603;23604;23605 30613;30614;30615;30616;30617;30618 30617 6 QTLLHYLVK Unmodified 1113.6546 0.65462995 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 9 0 1 58.036 58.036 3 0.0074801 14936 TMT1-8 62.303 24.581 77.115 124.02 99.004 79.246 121.95 89.262 73 123 102 80 123 87 1 1 1 1 1 1 5505.3 15408 356 15211 23606 30619 30619 1 QTMTYEQPK Unmodified 1124.5172 0.51720977 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 5 0 1 38.436 38.436 3 0.004789 9405 TMT1-4 76.143 62.48 153.47 198.26 187.18 104.47 186.45 187.63 145 199 189 109 189 181 1 1 1 1 1 1 15013 15409 1684 15212 23607 30620 30620 1 QTNLENLDQAFSVAER Unmodified 1833.8857 0.88570511 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 63.805 63.805 2 0.0036015 19714 TMT1-3 53.168 22.296 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15410 1833 15213 23608 30621 30621 1 QTNPSAMEVEEDDPVPEIR Unmodified 2154.9739 0.97392777 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2 0 1 57.017 57.017 3 3.0415E-13 17694 TMT1-1 108.71 98.609 15.748 36.789 27.082 45.104 73.04 36.292 15 36 29 44 73 36 1 1 1 1 1 1 10832 15411 1311 15214 23609 30622 30622 1 QTQAMQELHR Unmodified 1240.5983 0.59825406 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 4 0 1 30.9 30.9 3 8.3027E-05 6687 TMT1-3 117.99 85.844 38.062 43.272 58.444 34.216 87.649 51.865 36 44 58 36 87 51 1 1 1 1 1 1 6213.5 15412 2753 15215 23610 30623 30623 1 QTQIFTTYSDNQPGVLIQVYEGER Unmodified 2785.3559 0.35588833 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 5 0 2 72.691 72.691 3;4 3.8372E-18 22898 TMT1-4 109.91 87.497 77.265 109.33 86.098 48.695 101.88 74.911 73 109 88 51 102 73 2 2 2 2 2 2 28630 15413 618 15216 23611;23612 30624;30625 30625 2 QTQTFTTYSDNQPGVLIQVYEGER Unmodified 2773.3195 0.31950282 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 4.5 0.5 1 1 67.713 67.713 3 1.0196E-29 21201 TMT1-3 138.49 124.33 53.699 103.5 84.405 97.22 84.239 66.886 51 102 88 95 87 65 2 2 2 2 2 2 42028 15414 641 15217 23613;23614 30626;30627;30628 30626 3 QTQVSVLPEGGETPLFK Unmodified 1828.9571 0.95707914 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 4 2.16 1 1 1 65.602 65.602 3 4.3512E-25 20236 TMT1-5 152.71 136.04 711.41 980.48 790 611.75 1117 830.52 672 979 813 622 1122 809 5 5 5 5 5 5 267240 + 15415 506 15218 23615;23616;23617 30629;30630;30631;30632;30633 30633 5 QTSGGPVDASSEYQQELER Unmodified 2079.9345 0.93450579 784 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 0 0 2 0 1 47.383 47.383 3 1.3033E-30 13900 TMT1-1 146.18 120.59 23.291 28.808 28.554 21.95 20.963 30.316 22 29 29 22 22 29 1 1 1 1 1 1 15585 15416 784 15219 23618 30634 30634 1 QTTVSNSQQAYQEAFEISK Unmodified 2158.0178 0.017841494 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 5 0 1 58.106 58.106 3 3.2E-39 17160 TMT1-4 169.49 147.69 114.75 269.72 141.89 130.56 221.62 164.24 109 263 152 131 223 160 1 1 1 1 1 1 52820 15417 984 15220 23619 30635 30635 1 QTVAVGVIK Unmodified 913.55967 0.55966693 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 7.5 0.5 1 1 48.028 48.028 2 0.00026267 12722 TMT1-6 143.03 67.925 379.77 403.02 391.48 390.25 500.36 715.93 358 409 402 387 519 685 3 3 3 3 3 3 89969 15418 1490 15221 23620;23621 30636;30637;30638 30636 3 QTWNLQGQALEQAIISQKPQLEK Unmodified 2650.4079 0.40786432 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 1 8 0 1 70.994 70.994 4 1.6869E-17 21875 TMT1-7 106.58 95.97 46.504 64.956 63.926 51.008 49.184 52.963 44 65 65 51 51 51 1 1 1 1 1 1 8403 15419 1115 15222 23622 30639 30639 1 QTYFLPVIGLVDAEK Unmodified 1691.9134 0.91342341 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 0 7.5 0.5 1 1 83.72 83.72 3 0.006233 26752 TMT1-7 54.004 35.182 61.456 79.923 62.981 50.365 86.357 67.892 58 80 65 51 87 66 2 2 2 2 2 2 12158 15420 769 15223 23623;23624 30640;30641 30641 2 QVAASTAQLLVACK Unmodified 1458.7864 0.78644876 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 8.4 0.49 3 2 58.332 58.332 2;3 3.387E-46 15241 TMT1-8 220.23 166.48 967.4 1039.7 1177.1 896.64 1305.6 1141.7 913 1057 1187 907 1325 1106 6 6 6 6 6 6 543570 15421 3010;3014 15224 23625;23626;23627;23628;23629 30642;30643;30644;30645;30646;30647 30647 6 QVALWDTK Unmodified 959.50763 0.50763136 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 7 0 1 54.96 54.96 2 0.00099916 15531 TMT1-6 146.03 64.483 699.42 1241.2 962.04 771.89 1239.3 1136.2 663 1226 993 780 1256 1099 2 2 2 2 2 2 160210 15422 971 15225 23630 30648;30649 30649 2 QVAQQEAER Unmodified 1057.5152 0.51523593 1012 P35232 PHB Prohibitin yes yes 0 0 0 0 0 2 0 1 24.282 24.282 2 0.00029151 4775 TMT1-1 95.311 39.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15423 1012 15226 23631 30650 30650 1 QVAQQEAQR Unmodified 1056.5312 0.53122035 2479 Q99623 PHB2 Prohibitin-2 yes yes 0 0 0 0 0 2 0 1 23.109 23.109 2 0.0036881 4324 TMT1-1 69.825 66.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15424 2479 15227 23632 30651 30651 1 QVATALQNLQTK Unmodified 1313.7303 0.73031409 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.67 3.3 1 2 54.589 54.589 2;3 1.0376E-33 15276 TMT1-7 212.93 154.97 760.32 1033.2 1001.1 849.15 1250.1 902.41 719 1035 1021 853 1262 880 4 4 4 4 4 4 360940 15425 776 15228 23633;23634;23635 30652;30653;30654;30655 30655 4 QVAYIYK Unmodified 883.48035 0.48035398 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 7.5 0.5 1 1 48.413 48.413 2 0.0075487 12932 TMT1-7 126.54 46.163 636.12 838.15 760.42 795.98 946.05 749.05 601 840 785 786 964 728 3 3 3 3 3 3 150760 15426 1555;1556 15229 23636;23637 30656;30657;30658 30658 3 QVCANPEK Unmodified 944.43857 0.43856552 682 P13501 CCL5 C-C motif chemokine 5;RANTES(3-68);RANTES(4-68) yes yes 0 0 0 0 0 4.5 0.5 1 1 32.991 32.991 2;3 0.00034223 7547 TMT1-3 118.5 73.334 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15427 682 15230 23638;23639 30659;30660 30659 2 QVCANPEKK Unmodified 1072.5335 0.53352853 682 P13501 CCL5 C-C motif chemokine 5;RANTES(3-68);RANTES(4-68) yes yes 0 0 0 0 1 6 0 1 32.191 32.191 3 0.0043963 7068 TMT1-5 83.397 54.591 268 170.2 257.97 313.21 370.43 277.25 252 181 262 307 377 270 1 1 1 1 1 1 22578 15428 682 15231 23640 30661 30661 1 QVDFSEVER Unmodified 1107.5197 0.51965261 487 P05121;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 0 2 0 1 47.378 47.378 2 0.021846 13866 TMT1-1 77.288 59.775 68.817 94.101 76.282 96.203 105.96 105.71 65 94 80 94 109 102 1 1 1 1 1 1 9125.2 15429 487 15232 23641 30662 30662 1 QVDPAYTGR Unmodified 1005.488 0.48795855 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 3 0 1 34.004 34.004 2 0.0039223 8940 TMT1-2 100.57 68.098 53.849 80.17 78.924 57.342 71.671 59.783 51 80 80 58 73 58 1 1 1 1 1 1 6718.2 15430 2835 15233 23642 30663 30663 1 QVDQLTNDK Unmodified 1059.5197 0.51965261 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 3 1 1 1 41.554 41.554 2;3 0.0016925 11664 TMT1-1 115.23 32.953 176.41 295.17 216.77 181.47 240.98 232.97 167 292 225 182 246 225 2 2 2 2 2 2 103800 15431 575 15234 23643;23644 30664;30665 30664 2 QVEDEKNSFR Unmodified 1250.5891 0.58912916 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4 0 1 35.522 35.522 3 5.2119E-05 8527 TMT1-3 134.13 95.38 784.67 1118.1 984.69 711.15 1258.8 831.8 742 1116 1005 726 1262 814 1 1 1 1 1 1 90714 15432 1019 15235 23645 30666 30666 1 QVEDYPVDIYYLMDLSYSMK Unmodified 2471.1277 0.12765122 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 7 0 1 94.16 94.16 3 1.086E-08 30629 TMT1-6 70.99 54.691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15433 484 15236 23646 30667 30667 1 QVEEEILALK Unmodified 1170.6496 0.64960415 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 66.152 66.152 2 0.0048463 20624 TMT1-3 63.408 13.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15434 1833 15237 23647 30668 30668 1 QVEEELTHLQK Unmodified 1352.6936 0.69359423 1487 P67936-2 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 0 0 4 0 1 49.025 49.025 3 3.8928E-07 13851 TMT1-3 134.99 55.169 261.62 303.72 316.54 276.72 323.38 325.5 247 307 322 276 332 314 2 2 2 2 2 2 35685 15435 1487 15238 23648 30669;30670 30669 2 QVELALWDTAGQEDYDR Unmodified 2007.9174 0.91739917 1393;556 P61586;P62745;P08134 RHOA;RHOB;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoB;Rho-related GTP-binding protein RhoC no no 0 0 0 0 0 3.5 0.5 1 1 68.778 68.778 2;3 3.4334E-14 22637 TMT1-2 126.01 106.19 85.223 47.457 63.404 81.906 93.319 66.627 80 51 65 80 95 65 2 2 2 2 2 2 40276 15436 1393;556 15239 23649;23650 30671;30672 30671 2 QVEPLDPPAGSAPGEHVFVK Unmodified 2073.0531 0.053104788 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5 0 1 53.968 53.968 4 0.032142 15570 TMT1-4 34.009 13.641 68.585 93.457 115.71 86.483 90.999 97.607 65 94 116 87 94 94 1 1 1 1 1 1 5632.7 15437 1297 15240 23651 30673 30673 1 QVEQLEK Unmodified 872.46035 0.46034682 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 4 0 1 40.028 40.028 2 0.025736 10270 TMT1-3 93.143 5.9943 99.357 137.86 136.11 99.542 203.72 117.84 94 138 138 102 203 116 1 1 1 1 1 1 143750 15438 1754 15241 23652 30674 30674 1 QVETELFPCLR Unmodified 1390.6915 0.69148574 176 O43488;Q8NHP1;O95154 AKR7A2;AKR7L;AKR7A3 Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4;Aflatoxin B1 aldehyde reductase member 3 yes no 0 0 0 0 0 5 0 1 63.5 63.5 3 0.0007254 19322 TMT1-4 89.561 57.51 61.734 41.84 48.628 83.778 40.605 45.745 58 44 51 80 44 44 1 1 1 1 1 1 10765 15439 176 15242 23653 30675 30675 1 QVEVDAQQCMLEILDTAGTEQFTAMR Unmodified 2983.3725 0.37254273 1384 P61224 RAP1B Ras-related protein Rap-1b yes yes 0 0 0 0 0 5 0 2 88.227 88.227 3;4 2.949E-16 29052 TMT1-4 99.148 92.273 46.609 58.55 64.774 64.883 64.255 62.126 44 59 66 64 66 60 3 4 4 4 3 3 17323 15440 1384 15243 23654;23655 30676;30677;30678;30679 30677 4 QVFAVQR Unmodified 846.47119 0.47118627 563 P08246 ELANE Neutrophil elastase yes yes 0 0 0 0 0 7 0 1 40.157 40.157 2 0.0011521 9635 TMT1-6 97.473 25.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15441 563 15244 23656 30680 30680 1 QVFGEATK Unmodified 878.44978 0.44978213 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 6 0 1 42.976 42.976 2 0.0071328 11348 TMT1-5 103.55 36.864 138.51 249.11 133.64 170.65 208 172.09 131 245 145 167 212 167 1 1 1 1 1 1 20164 15442 533 15245 23657 30681 30681 1 QVHPDTGISSK Unmodified 1167.5884 0.58840088 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880;Q96A08 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 0 6 2.58 1 1 1 1 1 1 33.116 33.116 3 1.1436E-09 6954 TMT1-6 165.07 139.03 1682.3 2414.7 1776.2 1837.7 2834.8 2076.7 1589 2404 1859 1827 2859 2024 9 9 9 9 9 9 489020 15443 239;524;2168;2498 15246 23658;23659;23660;23661;23662;23663 30682;30683;30684;30685;30686;30687;30688;30689;30690;30691 30687 10 QVIAGVGALEQEHAQYK Unmodified 1839.9479 0.94791144 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 1 51.558 51.558 3 6.3873E-14 14644 TMT1-4 122.96 107.41 46.553 65.091 55.645 66.684 55.536 60.243 44 65 58 65 58 58 1 1 1 1 1 1 9306.1 15444 1786 15247 23664 30692 30692 1 QVIGTGSFFPK Unmodified 1179.6288 0.62880913 1735 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 0 9 0 2 61.68 61.68 2;3 1.1415E-10 16358 TMT1-8 156.51 101.12 307.58 458.89 395.63 205.74 475.93 333.94 291 457 401 218 475 326 2 2 2 2 2 2 92534 15445 1735 15248 23665;23666 30693;30694 30693 2 QVIINLINQK Unmodified 1181.7132 0.71320746 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 9 0 1 65.308 65.308 2 2.0116E-44 17813 TMT1-8 230.54 57.26 77.149 77.702 132.52 93.542 69.2 83.305 73 80 131 94 73 80 1 1 1 1 1 1 12169 15446 2744 15249 23667 30695 30695 1 QVILTLQPTLVAVGK Unmodified 1578.9709 0.97087871 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 0 9 0 1 73.602 73.602 2 2.6013E-30 21108 TMT1-8 174.84 143 61.533 63.948 63.599 58 85.236 90.31 58 65 65 58 87 87 2 2 2 2 2 2 7014.7 15447 683 15250 23668 30696;30697 30697 2 QVIQQNPALLPALLQQLGQENPQLLQQISR Unmodified 3377.8783 0.87832231 1301 P54725;P54725-3 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 0 9 0 1 91.092 91.092 3 0.0011278 27884 TMT1-8 43.612 31.69 7.511 0 0 15.177 6.6248 0 7 0 0 14 7 0 1 0 0 1 1 0 3002 15448 1301 15251 23669 30698 30698 1 QVKDNENVVNEYSSELEK Unmodified 2123.0019 0.0018570786 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 1 4 0 1 53.445 53.445 3 4.7009E-25 15607 TMT1-3 151.57 111.39 241.04 226.69 233.6 204.34 134.37 291.45 227 232 238 202 147 277 1 1 1 1 1 1 68228 15449 438 15252 23670 30699 30699 1 QVKPYVEEGLHPQIIIR Unmodified 2018.1313 0.13129553 2496 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 7 0 1 53.029 53.029 4 2.6331E-07 14718 TMT1-6 94.569 74.778 115.37 144.09 143.93 83.825 142.91 143.03 109 145 145 87 145 138 1 1 1 1 1 1 18688 15450 2496 15253 23671 30700 30700 1 QVLEGEEIAYK Unmodified 1277.6503 0.65033243 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 4 0 1 53.873 53.873 2 2.1758E-05 15815 TMT1-3 118.9 52.47 53.739 103.61 77.532 57.026 92.867 82.63 51 102 80 58 94 80 1 1 1 1 1 1 10200 15451 1577 15254 23672 30701 30701 1 QVLLAQAEAEK Unmodified 1198.6558 0.65575216 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 5 0 1 52.02 52.02 2 0.0037583 14802 TMT1-4 62.705 33.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15452 1767 15255 23673 30702 30702 1 QVLLSAAEAAEVILR Unmodified 1581.909 0.90900673 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 7 0 2 85.01 85.01 2;3 9.7467E-06 27279 TMT1-6 94.339 76.244 38.215 50.174 26.869 29.325 40.946 108.63 36 50 29 29 44 103 2 2 2 2 2 2 17580 15453 1504 15256 23674;23675 30703;30704 30704 2 QVLLSEPEEAAALYR Unmodified 1687.8781 0.87810054 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 4 0 2 62.872 62.872 2;3 1.3048E-08 19322 TMT1-3 94.747 62.141 37.725 96.301 70.079 65.981 47.176 91.396 36 94 73 65 51 87 1 1 1 1 1 1 13720 15454 692 15257 23676;23677 30705;30706 30706 2 QVLVENFSNFTNR Unmodified 1566.7791 0.77905519 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 8 0 1 61.561 61.561 2 1.6385E-45 18162 TMT1-7 189.24 174.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15455 876 15258 23678 30707 30707 1 QVNITVQK Unmodified 928.53418 0.53418046 2808 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 0 0 7 0 1 45.563 45.563 2 0.0031039 11761 TMT1-6 133.23 62.322 77.522 78.742 68.854 112.61 128.79 89.067 73 80 73 109 131 87 1 1 1 1 1 1 9575 15456 2808 15259 23679 30708 30708 1 QVPEASAR Unmodified 856.44028 0.44028008 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 3 0 1 27.465 27.465 2 0.0063034 6336 TMT1-2 72.038 59.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15457 2288 15260 23680 30709 30709 1 QVPNESFFNFFNPLK Unmodified 1826.8992 0.89917033 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 9 0 1 84.562 84.562 3 2.0309E-11 25339 TMT1-8 118.51 95.37 53.929 72.836 71.783 57.497 86.066 66.834 51 73 73 58 87 65 1 1 1 1 1 1 18667 15458 2488 15261 23681 30710 30710 1 QVPVESDLQEIIK Unmodified 1496.8086 0.80862399 1665;1682 Q13043;Q13043-2;Q13188;Q13188-2 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit no no 0 0 0 0 0 4 0 1 67.461 67.461 2 0.00055301 21147 TMT1-3 91.62 56.9 30.814 35.883 20.503 22.292 28.276 30.107 29 36 22 22 29 29 1 1 1 1 1 1 4873.8 15459 1665;1682 15262 23682 30711 30711 1 QVQEFLKDGDDVIIIGVFK Unmodified 2162.1623 0.16232089 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 7 0 1 79.347 79.347 3 0.00087014 25081 TMT1-6 58.997 49.833 30.699 51.751 26.472 36.951 43.564 22.209 29 51 29 36 44 22 1 1 1 1 1 1 3758.4 15460 686 15263 23683 30712 30712 1 QVQSLTCEVDALK Unmodified 1489.7446 0.74464352 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 5 0 1 60.794 60.794 3 1.8748E-29 18192 TMT1-4 203.74 160.24 593.92 807.48 665.23 452.8 956.28 605.92 561 807 681 467 954 594 2 2 2 2 2 2 158870 15461 575 15264 23684 30713;30714 30713 2 QVQSLTCEVDALKGTNESLER Unmodified 2376.1591 0.15910278 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 5 0 1 60.629 60.629 3 5.6486E-18 18148 TMT1-4 123.19 107.25 130.67 191.33 57.124 129.09 103.39 136.7 123 189 65 123 109 131 2 2 1 2 2 2 28003 15462 575 15265 23685 30715;30716 30715 2 QVQVALETAQR Unmodified 1241.6728 0.67279921 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 43.542 43.542 2 0.0019419 11472 TMT1-4 95.483 81.326 61.195 94.308 94.634 24.858 63.725 90.924 58 94 94 29 65 87 1 1 1 1 1 1 6193 15463 1833 15266 23686 30717 30717 1 QVSDLISVLR Unmodified 1128.6503 0.65027285 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 8 0 1 67.796 67.796 2 0.0053798 20616 TMT1-7 62.271 24.138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15464 764 15267 23687 30718 30718 1 QVSIEEGER Unmodified 1045.504 0.50400254 810 P20340;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 0 0 0 2 0 1 35.181 35.181 2 1.4773E-06 9048 TMT1-1 165.98 87.826 84.679 123.65 90.315 79.617 129.76 105.03 80 123 94 80 131 102 1 1 1 1 1 1 13182 15465 810 15268 23688 30719 30719 1 QVTITGSAASISLAQYLINVR Unmodified 2204.2165 0.21648172 1844 Q15366-6;Q15366-3;Q15366;Q15366-2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 0 9 0 1 80.72 80.72 3 4.5391E-31 23849 TMT1-8 131.3 108.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15466 1844 15269 23689 30720 30720 1 QVTQSYWDTNPTR Unmodified 1594.7376 0.73758431 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 0.5 1 1 46.901 46.901 2;3 1.4315E-17 12893 TMT1-4 178.84 151.57 316.42 527.03 293.72 311.79 448.63 408.27 299 520 315 309 456 395 3 3 3 3 3 3 134710 + 15467 32;554 15270 23690;23691 30721;30722;30723 30722 3 QVTVLELFR Unmodified 1103.6339 0.63389451 642 P11169;Q8TDB8-4;Q8TDB8-2;Q8TDB8;Q8TDB8-5 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 0 0 0 0 0 8 0 1 70.146 70.146 2 5.2652E-06 21582 TMT1-7 162.49 83.998 263.44 576.09 500.99 359.54 507.35 462.02 251 566 511 365 516 447 2 2 2 2 2 2 171330 15468 642 15271 23692 30724;30725 30725 2 QVVESAYEVIK Unmodified 1263.6711 0.67106787 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 5 0 1 58.427 58.427 3 2.9034E-06 17194 TMT1-4 122.7 52.979 489.05 606.96 608.23 435.47 488.94 622.45 462 611 616 440 507 597 2 2 2 2 2 2 50599 15469 385 15272 23693 30726;30727 30726 2 QVVLEEGTIAFK Unmodified 1332.7289 0.7289171 749 P16671;P16671-3;P16671-4;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 6 0 1 64.196 64.196 2 2.3215E-18 19720 TMT1-5 184.03 116.47 122.78 150.84 156.24 161.87 196.63 179.87 116 152 160 160 201 174 1 1 1 1 1 1 32188 15470 749 15273 23694 30728 30728 1 QVWGLNFGSK Unmodified 1134.5822 0.58219329 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 9 0 2 64.303 64.303 2;3 2.0811E-06 17477 TMT1-8 147.75 122.86 331.02 490.29 395.92 300.16 510.85 378.78 313 488 407 305 514 369 3 3 3 3 3 3 150550 15471 1225 15274 23695;23696 30729;30730;30731 30730 3 QVYEEEYGSSLEDDVVGDTSGYYQR Unmodified 2887.2308 0.23080697 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 2 0 1 66.132 66.132 3 1.6398E-24 21129 TMT1-1 121.39 119.23 0 15.704 15.288 0 6.523 23.266 0 15 15 0 7 22 0 1 1 0 1 1 11413 15472 578 15275 23697 30732 30732 1 QVYGLNFASK Unmodified 1125.5819 0.58185893 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 0 8 0 1 57.497 57.497 2 0.00497 16548 TMT1-7 91.549 45.087 61.326 87.115 78.835 49.138 101.35 89.85 58 87 80 51 102 87 1 1 1 1 1 1 8665.3 15473 2872 15276 23698 30733 30733 1 QWHVEHFVCAK Unmodified 1439.6768 0.67683873 1149;2097 P48059;P48059-4;P48059-2;P48059-5;P48059-3;Q7Z4I7-4;Q7Z4I7-3;Q7Z4I7;Q7Z4I7-5;Q7Z4I7-2 LIMS1;LIMS2 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2 no no 0 0 0 0 0 7.33 0.471 2 1 43.837 43.837 3;4 3.4972E-05 11167 TMT1-6 85.813 60.516 643.23 839.76 826.53 668.96 923.46 724.11 608 843 841 673 936 704 2 2 2 2 2 2 135700 15474 1149;2097 15277 23699;23700;23701 30734;30735;30736 30735 3 QWLEIDLLK Unmodified 1156.6492 0.64921022 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 7 0 1 77.376 77.376 2 0.0032428 24270 TMT1-6 102.06 48.734 54.034 49.386 73.871 42.19 79.697 59.554 51 51 73 44 80 58 1 1 1 1 1 1 7063.8 15475 666 15278 23702 30737 30737 1 QWLIDTLYAFNSGNVER Unmodified 2024.9956 0.99558991 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 9 0 1 85.573 85.573 3 1.385E-07 25777 TMT1-8 81.594 64.088 46.848 19.504 44.589 36.195 26.317 68.539 44 22 44 36 29 65 1 1 1 1 1 1 7518.3 15476 2930 15279 23703 30738 30738 1 QWLQEIDR Unmodified 1086.5458 0.54580778 1444;2616 P62820;P62820-2;Q9H0U4;Q92928 RAB1A;RAB1B;RAB1C Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 0 0 0 0 0 5 0 1 56.188 56.188 2 0.0060551 16450 TMT1-4 110.41 29.217 153.62 210.55 151.51 184.1 250.04 209.26 145 210 160 181 254 203 1 1 1 1 1 1 34638 15477 1444;2616 15280 23704 30739 30739 1 QWNNCAFLESSAK Unmodified 1553.6933 0.69327665 1384 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 0 7 0 2 56.862 56.862 3;4 7.1826E-06 16306 TMT1-6 106.11 95.164 906.32 1173.7 1050.1 903.77 1503.4 1158.5 856 1177 1077 910 1515 1127 3 3 3 3 3 3 244110 15478 1384 15281 23705;23706 30740;30741;30742 30741 3 QWNVNWDIR Unmodified 1229.5942 0.59415496 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 7.5 0.5 1 1 61.22 61.22 2 0.00092411 17998 TMT1-7 126.82 99.688 453.64 710.84 520.1 456.33 647.46 608.33 429 705 541 457 659 588 3 3 3 3 3 3 126490 15479 2112 15282 23707;23708 30743;30744;30745 30745 3 QYADICLFNTAQYK Unmodified 1733.8083 0.80830641 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 0 7 0 1 66.669 66.669 3 0.00014078 20075 TMT1-6 82.651 64.287 68.785 110.2 68.03 89.741 68.862 98.239 65 109 73 87 73 94 1 1 1 1 1 1 13814 15480 1179 15283 23709 30746 30746 1 QYADVEGF Unmodified 927.39741 0.39741221 1409;1410 P61978-2;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 3 0 1 59.696 59.696 2 0.0047144 19079 TMT1-2 75.854 65.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15481 1409;1410 15284 23710 30747 30747 1 QYAGTGALK Unmodified 907.47633 0.47633123 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 6 0 1 39.932 39.932 2 0.001766 10155 TMT1-5 113.62 54.417 84.523 139.41 103.16 134.5 134.57 104.89 80 138 109 131 138 102 1 1 1 1 1 1 11177 15482 2744 15285 23711 30748 30748 1 QYDADLEQILIQWITTQCR Unmodified 2393.1685 0.16854525 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 7.75 0.829 2 1 1 98.85 98.85 3;4 6.1572E-24 32348 TMT1-7 139.9 135.95 88.955 154.5 128.07 139.31 148.68 174.85 84 151 132 137 154 168 6 8 8 9 9 9 64416 15483 1052 15286 23712;23713;23714;23715 30749;30750;30751;30752;30753;30754;30755;30756;30757 30754 9 QYFVQWCADR Unmodified 1371.603 0.60300508 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 7 0 1 57.393 57.393 2 0.030704 16444 TMT1-6 70.389 15.84 77.475 86.165 70.544 64.692 114.23 120.4 73 87 73 65 116 116 1 1 1 1 1 1 10293 15484 3006 15287 23716 30758 30758 1 QYGNEVFLAK Unmodified 1167.5924 0.59242362 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 6 0 1 54.633 54.633 2 2.6766E-06 15953 TMT1-5 157.95 107.07 53.709 111.08 76.344 73.654 84.26 97.8 51 109 80 73 87 94 1 1 1 1 1 1 12922 15485 1232 15288 23717 30759 30759 1 QYLAAPLVMLK Unmodified 1245.7155 0.71551564 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 9 0 1 72.482 72.482 3 1.0225E-05 20594 TMT1-8 107.83 79.088 46.72 58 33.615 36.402 50.112 45.474 44 58 36 36 51 44 1 1 1 1 1 1 12423 15486 772 15289 23718 30760 30760 1 QYLPHVAR Unmodified 982.53485 0.53484916 138 O15260;O15260-2;O15260-3 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 6 0 1 35.221 35.221 3 0.0003719 8286 TMT1-5 84.568 39.876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15487 138 15290 23719 30761 30761 1 QYPGSWAEGTLQLR Unmodified 1604.7947 0.79470526 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 6 0 1 60.581 60.581 3 0.0038353 18301 TMT1-5 62.357 49.524 53.878 103.99 53.971 51.04 79.033 67.035 51 102 58 51 80 65 1 1 1 1 1 1 8015.9 15488 2378 15291 23720 30762 30762 1 QYPWGTVQVENEAHCDFVK Unmodified 2306.0426 0.042616456 1752 Q14141-2;Q14141-4;Q14141 SEPT6 Septin-6 yes no 0 0 0 0 0 5 0 1 59.34 59.34 3 3.4154E-08 17655 TMT1-4 70.414 51.378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15489 1752 15292 23721 30763 30763 1 QYPWGVAEVENGEHCDFTILR Unmodified 2519.154 0.15395782 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 5 0 1 66.877 66.877 3 2.7974E-07 20618 TMT1-4 82.406 77.197 23.264 36.289 26.7 53.509 34.17 29.939 22 36 29 51 36 29 1 1 1 1 1 1 10105 15490 1883 15293 23722 30764 30764 1 QYQEEIQELNEVAR Unmodified 1747.8377 0.83769228 2763 Q9NVK5;Q9NVK5-2;Q9NVK5-3 FGFR1OP2 FGFR1 oncogene partner 2 yes no 0 0 0 0 0 2 0 1 59.439 59.439 3 0.0011586 18623 TMT1-1 70.281 69.175 15.777 29.315 28.568 21.801 28.812 15.168 15 29 29 22 29 15 1 1 1 1 1 1 3957.9 15491 2763 15294 23723 30765 30765 1 QYQIPDVR Unmodified 1017.5243 0.52434406 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 4 0 1 46.556 46.556 2 0.0016637 12915 TMT1-3 85.813 41.366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15492 2172 15295 23724 30766 30766 1 QYSGYLK Unmodified 857.42832 0.42831841 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 6 0 1 44.358 44.358 2 0.0011757 11914 TMT1-5 98.392 79.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15493 634 15296 23725 30767 30767 1 QYTGINAISK Unmodified 1093.5768 0.57677356 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 7 0 1 48.18 48.18 3 0.00023117 12838 TMT1-6 103.34 89.135 254.13 360.43 263.68 270.29 425.79 367.35 240 359 276 269 431 356 2 2 2 2 2 2 40674 15494 1379 15297 23726 30768;30769 30769 2 QYTGINAISKK Unmodified 1221.6717 0.67173657 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 1 9 0 1 44.265 44.265 3 0.0016409 9567 TMT1-8 68.463 38.696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15495 1379 15298 23727 30770 30770 1 QYVGFATLPNQVHR Unmodified 1628.8423 0.84232415 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 8 0 1 49.479 49.479 3 2.1573E-05 13400 TMT1-7 76.728 57.457 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15496 2486 15299 23728 30771 30771 1 QYVQGCGV Unmodified 909.40145 0.40145173 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 3.5 0.5 1 1 43.012 43.012 2 6.7991E-05 12584 TMT1-2 158.16 126.05 335.81 776.66 431.1 338.66 502.65 444.04 319 758 457 342 510 430 3 3 3 3 3 3 277270 15497 1397 15300 23729;23730 30772;30773;30774 30773 3 RAAPEASGTPSSDAVSR Unmodified 1657.802 0.80197548 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 3 0 1 26.708 26.708 3 2.2113E-05 6037 TMT1-2 82.9 50.624 15.899 22.099 14.143 15.28 14.453 15.578 15 22 15 15 15 15 1 1 1 1 1 1 5270.5 15498 971 15301 23731 30775 30775 1 RADLNQGIGEPQSPSR Unmodified 1723.8602 0.86015906 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 1 4 0 1 34.799 34.799 3 6.8375E-18 8273 TMT1-3 142.62 129.2 38.245 35.146 34.654 44.82 64.127 52.536 36 36 36 44 65 51 1 1 1 1 1 1 15281 15499 2376 15302 23732 30776 30776 1 RAEDGSVIDYELIDQDAR Unmodified 2063.976 0.97597668 534 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 1 2 0 1 54.743 54.743 3 2.062E-30 16754 TMT1-1 172.56 132.47 154.9 212.12 115.79 85.1 164.31 188.26 146 211 123 87 167 181 2 2 2 2 2 2 122100 15500 534 15303 23733 30777;30778 30777 2 RAEFTVETR Unmodified 1107.5673 0.5672715 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6 1.41 1 1 1 1 1 32.362 32.362 3 2.2249E-05 7216 TMT1-3 152.04 88.507 1006 1215 1040.8 752.57 1029.2 1247.7 949 1222 1065 763 1058 1198 5 5 5 5 5 5 391240 15501 831 15304 23734;23735;23736;23737;23738 30779;30780;30781;30782;30783;30784 30779 6 RAEVELEYSR Unmodified 1250.6255 0.62551466 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 1 2 0 1 36.298 36.298 3 0.003363 9468 TMT1-1 83.226 75.006 46.7 42.836 49.732 59.369 56.385 45.295 44 44 51 58 58 44 1 1 1 1 1 1 4182.2 15502 1530 15305 23739 30785 30785 1 RAEYSPCR Unmodified 1037.4713 0.47126263 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 3.25 1.48 1 1 1 1 22.451 22.451 3 0.0076266 4414 TMT 1-phospho 85.862 67.19 117.33 174.72 150.01 100.1 130.05 99.691 111 174 153 102 132 97 6 6 6 6 6 6 50769 15503 565 15306 23740;23741;23742;23743 30786;30787;30788;30789;30790;30791 30786 6 RAGELTEDEVER Unmodified 1402.6688 0.66883604 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 1 2 0 1 32.346 32.346 3 6.1307E-11 7925 TMT1-1 163.09 136.98 100.12 92.5 45.727 76.328 39.115 99.088 94 94 51 73 44 94 1 1 1 1 1 1 9995.6 15504 1425 15307 23744 30792 30792 1 RAIADMLR Unmodified 944.52257 0.52256992 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8 0 1 41.906 41.906 3 0.0020202 10364 TMT1-7 105.1 64.072 108.33 114.62 89.65 104.05 111.36 151.39 102 116 94 102 116 145 1 1 1 1 1 1 11203 15505 3010 15308 23745 30793 30793 1 RALELEQER Unmodified 1142.6044 0.60438529 894 P26038 MSN Moesin yes yes 0 0 0 0 1 2.5 0.5 1 1 32.992 32.992 3 0.001865 8429 TMT1-2 96.113 80.139 123.14 121.62 120.31 109.16 149.06 173.77 116 124 123 109 153 167 2 2 2 2 2 2 14437 15506 894 15309 23746;23747 30794;30795 30795 2 RAPFDLFENK Unmodified 1235.6299 0.62987176 561 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 1 7.67 0.471 1 2 57.325 57.325 2;3 0.0017426 16397 TMT1-6 90.697 81.264 420.96 427.46 481.91 387.3 486.52 574.55 397 436 487 389 501 552 4 4 4 4 4 4 76395 15507 561 15310 23748;23749;23750 30796;30797;30798;30799 30796 4 RAPFDLFENKK Unmodified 1363.7248 0.72483478 561 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 2 9 0 1 51.456 51.456 4 0.02481 12399 TMT1-8 60.49 10.345 201.59 244.14 176.31 184.06 173.43 277.54 190 245 185 181 183 265 1 1 1 1 1 1 18479 15508 561 15311 23751 30800 30800 1 RAPFDLFENR Unmodified 1263.636 0.63601977 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 1 7.5 0.5 1 1 53.634 53.634 3 1.4244E-05 14863 TMT1-6 147.28 125.91 315.9 404.52 305.12 318.1 309.5 308.84 298 405 319 313 320 298 3 3 3 3 3 3 116710 15509 545 15312 23752;23753 30801;30802;30803 30801 3 RAPSVANVGSHCDLSLK Unmodified 1809.9156 0.91556545 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 1 1 1 41.629 41.629 4 1.6621E-19 8601 TMT1-8 123.41 64.104 378.3 583.49 485.99 454.79 546.45 658.12 358 580 502 452 564 632 3 3 3 3 3 3 79107 15510 831 15313 23754;23755 30804;30805;30806 30806 3 RAPTCSLDGALPLGAQIPAVHR Unmodified 2299.2219 0.22191823 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 1 8 0 1 52.862 52.862 4 0.0001518 14718 TMT1-7 58.107 33.82 46.667 50.299 48.94 67.094 54.967 76.249 44 51 51 65 58 73 1 1 1 1 1 1 13721 15511 3042 15314 23756 30807 30807 1 RAQADLAYQLQVAK Unmodified 1573.8576 0.85763986 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 1 7 0 1 49.015 49.015 3 0.005422 13141 TMT1-6 63.257 38.561 77.414 109.74 60.745 58.604 62.174 90.968 73 109 65 58 65 87 1 1 1 1 1 1 5148.9 15512 318 15315 23757 30808 30808 1 RAQAEQAALR Unmodified 1112.6051 0.60505399 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 24.407 24.407 3 0.0010595 4242 TMT1-3 96.342 26.517 15.985 14.784 5.8966 15.935 5.7903 23.287 15 15 7 15 7 22 1 1 1 1 1 1 1359.9 15513 1833 15316 23758 30809 30809 1 RAQEILSQLPIK Unmodified 1394.8245 0.82454882 1030 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 0 1 8 0 2 57.37 57.37 3;4 0.00049712 16482 TMT1-7 89.301 50.268 222.41 344.49 199.47 158.05 262.77 330.42 210 341 211 160 269 317 2 2 2 2 2 2 24047 15514 1030 15317 23759;23760 30810;30811 30810 2 RAQSELAAHQK Unmodified 1237.6527 0.65273247 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 1 5 0 1 25.21 25.21 4 0.011623 4328 TMT1-4 58.676 28.933 30.919 13.51 21.854 22.069 35.872 22.428 29 15 22 22 36 22 1 1 1 1 1 1 1595.1 15515 890 15318 23761 30812 30812 1 RATVVESSEK Unmodified 1104.5775 0.57750184 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 1 4 0 1 28.695 28.695 3 0.00010519 5883 TMT1-3 122.55 94.926 138.61 157.64 194.78 160.22 162.16 180.86 131 160 196 160 168 174 1 1 1 1 1 1 15533 15516 1411 15319 23762 30813 30813 1 RAVETTAQSDNK Unmodified 1318.6477 0.64770667 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 1 4 0 1 26.213 26.213 3 0.00068989 4906 TMT1-3 86.592 63.675 26.508 32.9 25.389 14.259 33.09 22.508 25 33 26 15 33 22 1 1 1 1 1 1 2448.9 15517 1057 15320 23763 30814 30814 1 RCEPIAMTVPR Unmodified 1328.6693 0.66931051 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 7 0.816 1 1 1 38.942 38.942 3 3.4308E-05 9646 TMT1-5 112.82 63.836 245.16 373.96 317.89 274.94 355.48 337.37 232 372 327 275 363 326 3 3 3 3 3 3 49177 15518 971 15321 23764;23765;23766 30815;30816;30817 30815 3 RDDGSWEVIEGYR Unmodified 1580.7219 0.72193424 387 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 1 3 0 1 51.143 51.143 3 4.6935E-08 15706 TMT1-2 118.58 114.08 107.88 152.22 133.74 132.44 147.49 157.82 102 152 138 131 152 152 1 1 1 1 1 1 15489 15519 387 15322 23767 30818 30818 1 RDELTLEGIK Unmodified 1172.6401 0.6401021 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 1 5 0 1 48.941 48.941 3 0.0010653 13586 TMT1-4 63.76 48.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15520 1059 15323 23768 30819 30819 1 RDETLQDGCDTHFCK Unmodified 1880.7781 0.77814527 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 3.5 0.5 1 1 36.985 36.985 4 3.044E-08 10172 TMT1-2 114.01 101.85 274.9 488.9 451.15 307.34 360.82 534.43 261 484 458 312 376 511 2 2 2 2 2 2 52066 15521 471 15324 23769;23770 30820;30821 30820 2 RDFLQLFAPR Unmodified 1261.6931 0.69314072 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 1 9 0 1 64.701 64.701 3 1.8092E-07 17610 TMT1-8 158.94 111.59 77.305 101.88 85.783 41.495 78.922 83.028 73 102 87 44 80 80 1 1 1 1 1 1 11710 15522 165 15325 23771 30822 30822 1 RDHALLEEQSK Unmodified 1324.6735 0.67352749 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 4 0.707 1 2 1 31.275 31.275 3;4 7.8471E-06 6773 TMT1-3 117.07 76.357 744.65 1194.2 794.09 738.43 819.57 1006.4 704 1182 834 733 849 966 4 4 4 4 4 4 114490 15523 195 15326 23772;23773;23774;23775 30823;30824;30825;30826 30824 4 RDHPLPEVAHVK Unmodified 1396.7575 0.75753189 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 1 5 0 2 32.877 32.877 4;5 0.0020791 7192 TMT1-4 72.29 48.686 154.59 211.27 168.29 146.5 162 173.4 146 211 174 146 167 167 2 2 2 2 2 2 10528 15524 677 15327 23776;23777 30827;30828 30828 2 RDPHLACVAYER Unmodified 1485.7147 0.7146808 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 3.5 0.5 1 1 32.243 32.243 4 0.0044167 8273 TMT1-2 65.043 44.662 122.71 143.09 174.69 98.227 151.39 120.4 116 145 174 102 153 117 2 2 2 2 2 2 26413 15525 1540 15328 23778;23779 30829;30830 30829 2 RDPPQYPVVPVHLDR Unmodified 1786.9479 0.94785186 625 P10153 RNASE2 Non-secretory ribonuclease yes yes 0 0 0 0 1 5 0 1 44.191 44.191 4 0.00046112 11713 TMT1-4 74.141 45.508 99.571 130.9 106.06 79.111 106.75 105.69 94 131 109 80 109 102 1 1 1 1 1 1 15426 15526 625 15329 23780 30831 30831 1 RDQALTEEHAR Unmodified 1324.6484 0.64837537 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 3 1.29 1 1 2 1 1 21.235 21.235 3;4 3.952E-07 3817 TMT1-2 132.62 105.87 601.19 730.74 770.96 683.68 723.91 819.35 568 737 784 680 749 788 14 14 14 14 14 14 107550 15527 672 15330 23781;23782;23783;23784;23785;23786 30832;30833;30834;30835;30836;30837;30838;30839;30840;30841;30842;30843;30844;30845 30840 14 RDVQEIFR Unmodified 1061.5618 0.56179219 1738;40 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 1 5 0 1 40.651 40.651 3 0.00195 10306 TMT1-4 108.15 64.929 100.16 53.743 72.71 57.156 101.24 82.391 94 58 73 58 102 80 1 1 1 1 1 1 8229.9 15528 40;1738 15331 23787 30846 30846 1 REDLVEEIK Unmodified 1129.5979 0.59790293 664 P12081-4;P12081;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 2.5 0.5 1 1 46.442 46.442 3 0.00029924 13751 TMT1-2 126.39 61.547 183.71 313.48 237.8 218.22 312.72 318.34 174 310 247 218 319 307 2 2 2 2 2 2 25638 15529 664 15332 23788;23789 30847;30848 30848 2 REDYESLPK Unmodified 1135.551 0.55095274 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 3 0 1 38.565 38.565 3 0.0010289 10707 TMT1-2 101.97 83.638 61.46 79.934 62.296 65.726 85.394 75.381 58 80 65 65 87 73 1 1 1 1 1 1 8739.4 15530 3006 15333 23790 30849 30849 1 REEAAVDAQQQK Unmodified 1371.6743 0.67425577 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2 0 1 29.064 29.064 3 0.00012318 6627 TMT1-1 100.31 66.428 69.181 63.814 40.74 36.115 42.796 45.683 65 65 43 36 44 44 1 1 1 1 1 1 4169.4 15531 1833 15334 23791 30850 30850 1 REEEEDFIR Unmodified 1221.5626 0.56258006 2359 Q96A65 EXOC4 Exocyst complex component 4 yes yes 0 0 0 0 1 2 0 1 36.352 36.352 3 0.012215 9496 TMT1-1 70.412 34.078 54.207 42.312 50.788 35.516 42.824 45.682 51 44 51 36 44 44 1 1 1 1 1 1 9077.3 15532 2359 15335 23792 30851 30851 1 REELFIVSK Unmodified 1119.6288 0.62880913 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 1 6 0 1 50.095 50.095 3 0.0077412 14142 TMT1-5 76.143 39.472 263.99 322.54 262.65 197.77 333.32 355.06 249 324 270 201 339 342 1 1 1 1 1 1 19847 15533 716 15336 23793 30852 30852 1 REELITNWEQIR Unmodified 1585.8213 0.82125436 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 1 5 0 1 52.685 52.685 3 1.3364E-08 15073 TMT1-4 132.06 97.099 92.152 123.03 97.227 118.76 118.52 136.26 87 123 102 116 123 131 1 1 1 1 1 1 13026 15534 1737 15337 23794 30853 30853 1 REEYDVLDK Unmodified 1165.5615 0.56151742 824 P20963-3;P20963 CD247 T-cell surface glycoprotein CD3 zeta chain yes no 0 0 0 0 1 3 0 1 44.329 44.329 3 0.0023357 13022 TMT1-2 58.511 21.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15535 824 15338 23795 30854 30854 1 REFPTVPLVK Unmodified 1184.6917 0.69174374 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 1 8 0 1 52.267 52.267 3 0.0003598 14501 TMT1-7 72.34 30.941 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15536 1910 15339 23796 30855 30855 1 REILGTCK Unmodified 975.51715 0.51715019 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 7.5 0.5 1 1 35.859 35.859 3 0.0035506 7998 TMT1-6 98.044 67.315 2166.4 2955.3 2364.5 1814.1 2225.5 2732.6 2046 2952 2434 1827 2297 2623 2 2 2 2 2 2 144830 15537 776 15340 23797;23798 30856;30857 30856 2 REPIPSLEAIYLLSPTEK Unmodified 2055.1252 0.1252071 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 1 6.67 0.471 1 2 71.701 71.701 3;4 3.8338E-06 22057 TMT1-6 88.471 62.605 161.01 187.02 192.55 168.18 210.92 273.27 152 189 196 168 218 262 3 3 3 3 3 3 57075 15538 1878 15341 23799;23800;23801 30858;30859;30860 30859 3 REPWLLPSQHNDIIR Unmodified 1872.9959 0.99586468 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 7 0 1 48.579 48.579 4 0.00071387 12915 TMT1-6 65.943 47.114 107.89 160.87 125.29 140.43 156.27 135.19 102 160 131 138 160 131 1 1 1 1 1 1 24458 15539 1792 15342 23802 30861 30861 1 REQEVNILK Unmodified 1127.6299 0.62987176 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5 0 1 39.672 39.672 3 0.0021225 9977 TMT1-4 94.309 29.935 402.75 614.61 498.54 419.74 452.91 474.24 381 611 514 419 467 457 2 2 2 2 2 2 51425 15540 1019 15343 23803 30862;30863 30863 2 REVENSEDPK Unmodified 1201.5575 0.55749468 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 2 0 1 27.415 27.415 4 0.001509 5993 TMT1-1 85.958 33.68 68.732 110.05 77.057 57.32 78.744 67.043 65 109 80 58 80 65 1 1 1 1 1 1 3604.9 15541 776 15344 23804 30864 30864 1 REYHTEK Unmodified 961.46174 0.4617438 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 3.25 1.48 1 1 1 1 21.649 21.649 4 0.01496 3688 TMT1-4 71.342 27.535 288.95 287.1 245.72 209.79 212.76 346.77 272 292 253 209 224 331 7 7 7 7 7 7 9520 15542 437 15345 23805;23806;23807;23808 30865;30866;30867;30868;30869;30870;30871 30871 7 RFDDAVVQSDMK Unmodified 1409.6609 0.66091389 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 1 5 0 2 45.895 45.895 3;4 4.4315E-09 12348 TMT1-4 145.52 103.9 884.78 1532.5 1119.8 1091.7 1110.9 1705.9 838 1514 1169 1079 1166 1630 4 4 4 4 4 4 137300 15543 641 15346 23809;23810 30872;30873;30874;30875 30873 4 RFDEAALSIQK Unmodified 1276.6776 0.67755023 2490 Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 1 7 0 1 50.027 50.027 3 0.00026304 13520 TMT1-6 101.39 34.136 115.77 121.44 97.217 118.46 134.54 127.28 109 123 102 116 138 123 1 1 1 1 1 1 7291.4 15544 2490 15347 23811 30876 30876 1 RFDEATQLR Unmodified 1134.5782 0.57817054 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 1 5 0 1 35.613 35.613 3 0.011583 8335 TMT1-4 71.221 44.779 91.653 130.28 174.92 113.75 139.08 214.56 87 131 174 116 145 205 1 1 1 1 1 1 13391 15545 765 15348 23812 30877 30877 1 RFDEILEASDGIMVAR Unmodified 1820.9091 0.90908309 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 5.33 0.471 2 1 66.648 66.648 3;4 1.8373E-44 20500 TMT1-4 211.45 196.52 430.93 560.61 496.51 413.56 496.86 664.86 407 562 509 414 515 637 5 5 5 5 5 5 283380 15546 706;707 15349 23813;23814;23815 30878;30879;30880;30881;30882 30878 5 RFDGVQDPR Unmodified 1088.5363 0.53630573 58 O00264;O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 0 0 0 0 1 5.5 0.5 1 1 32.092 32.092 3 0.0071878 7050 TMT1-5 49.06 15.939 91.972 131.17 120.58 93.56 106.09 105.7 87 131 123 94 109 102 1 1 1 1 1 1 21508 15547 58 15350 23816;23817 30883;30884 30884 2 RFDVSGYPTLK Unmodified 1281.6717 0.67173657 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 8 0 1 51.538 51.538 3 6.1793E-05 14227 TMT1-7 108.5 88.918 369.21 542.56 425.2 491.01 382.3 546.61 349 540 445 479 405 523 1 1 1 1 1 1 43512 15548 686 15351 23818 30885 30885 1 RFEEELAAR Unmodified 1119.5673 0.5672715 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 1 3 0 1 37.685 37.685 3 0.00063469 10369 TMT1-2 107.95 74.574 53.771 126.36 52.974 43.314 86.168 82.821 51 123 58 44 87 80 1 1 1 1 1 1 7337.2 15549 1572 15352 23819 30886 30886 1 RFEELGVK Unmodified 976.53418 0.53418046 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 1 6.5 0.5 1 1 43.28 43.28 3 0.0025892 11382 TMT1-5 102.07 49.664 439.82 885.2 711.31 594.11 677.3 895.3 418 871 733 594 703 858 2 2 2 2 2 2 43776 15550 1586 15353 23820;23821 30887;30888 30887 2 RFEQEINAK Unmodified 1133.5829 0.58292157 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 1 5 0 1 37.915 37.915 3 0.035543 9203 TMT1-4 55.718 45.261 586.26 663.83 632.78 379.77 699.37 508.78 553 671 640 394 702 496 1 1 1 1 1 1 10405 15551 325 15354 23822 30889 30889 1 RFNDGSDEK Unmodified 1066.468 0.46795139 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 4 0 1 29.428 29.428 3 0.0043869 6113 TMT1-3 83.438 15.214 153.59 193.2 171.17 106.29 140.81 174 145 194 174 109 145 167 1 1 1 1 1 1 14506 15552 888 15355 23823 30890 30890 1 RFQDDPDVR Unmodified 1146.5418 0.54178503 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 1 2 0 1 30.739 30.739 3 0.009279 7343 TMT1-1 74.173 57.147 23.087 51.987 43.105 28.464 35.321 29.906 22 51 44 29 36 29 1 1 1 1 1 1 3793.4 15553 1786 15356 23824 30891 30891 1 RFQMIPLDPK Unmodified 1243.6747 0.67471346 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 9 0 1 54.914 54.914 3 0.0019043 13695 TMT1-8 98.04 60.696 254.56 315.2 230.78 171.11 282.68 311.73 240 316 239 174 288 300 2 2 2 2 2 2 29046 + 15554 32;554 15357 23825 30892;30893 30892 2 RFQTIDIEPDIEALLSQGPSCA Unmodified 2459.2002 0.20023931 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 1 6 0 1 85.836 85.836 3 4.3518E-14 28194 TMT1-5 83.251 68.322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15555 528 15358 23826 30894 30894 1 RFTMELAK Unmodified 994.52699 0.52698659 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 1 8 0 1 46.738 46.738 3 0.041394 12293 TMT1-7 58.699 45.662 153.32 237.78 178.68 144.76 163.53 222.39 145 236 185 145 170 213 1 1 1 1 1 1 13698 15556 387 15359 23827 30895 30895 1 RGDDSFGDK Unmodified 995.43084 0.4308376 866 P23588-2;P23588 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 1 4 0 1 31.482 31.482 3 0.0042886 6934 TMT1-3 83.869 36.266 85.076 117.2 29.145 52.659 71.63 67.246 80 116 36 51 73 65 1 1 1 1 1 1 5067.7 15557 866 15360 23828 30896 30896 1 RGDIIGVQGNPGK Unmodified 1309.7102 0.71024735 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 1 6.5 0.5 1 1 38.834 38.834 3 0.00059944 9225 TMT1-6 81.918 57.065 100.19 168.42 150.51 99.468 103.95 160.13 95 167 153 101 109 153 2 2 2 2 2 2 11374 15558 1820 15361 23829;23830 30897;30898 30898 2 RGDLPFVVPR Unmodified 1154.656 0.65602693 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 6.25 3.11 1 1 1 1 48.743 48.743 3 3.4877E-05 13017 TMT1-7 138.23 86.234 1223.6 1591.8 1297.9 1300.1 1495.2 1658.7 1155 1594 1347 1286 1541 1596 8 8 8 8 8 8 661470 15559 1019 15362 23831;23832;23833;23834 30899;30900;30901;30902;30903;30904;30905;30906 30904 8 RGEDPTIACQK Unmodified 1273.6085 0.60848439 821 P20933 AGA N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;Glycosylasparaginase alpha chain;Glycosylasparaginase beta chain yes yes 0 0 0 0 1 4 0 1 31.975 31.975 3 0.0021675 7129 TMT1-3 83.182 72.857 68.689 109.93 84.335 64.125 100.66 89.87 65 109 87 65 102 87 1 1 1 1 1 1 9779.3 15560 821 15363 23835 30907 30907 1 RGEESSEMEQISIIER Unmodified 1891.8946 0.89455524 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 1 2 0 1 48.058 48.058 3 1.4952E-15 14127 TMT1-1 129.65 107.76 54.398 41.761 19.296 38.793 26.455 61.073 51 43 22 37 29 58 1 1 1 1 1 1 6783.2 15561 1601 15364 23836 30908 30908 1 RGEFFELIR Unmodified 1165.6244 0.62439245 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 1 7 0 1 53.483 53.483 3 0.00053535 14887 TMT1-6 114.89 51.818 92.565 92.882 53.4 74.462 114.04 112.94 87 94 58 73 116 109 1 1 1 1 1 1 12682 15562 322 15365 23837 30909 30909 1 RGEIIAK Unmodified 785.47594 0.4759373 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 6 0 1 32.93 32.93 3 0.0023927 7377 TMT1-5 72.492 11.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15563 1261 15366 23838 30910 30910 1 RGETESEEFEK Unmodified 1339.5892 0.58918874 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 2.5 0.5 1 1 33.933 33.933 3 3.9932E-06 8857 TMT1-2 123.95 60.324 381.89 483.91 508.78 416.87 514.77 565.21 361 487 516 418 529 544 3 3 3 3 3 3 63474 15564 1597 15367 23839;23840 30911;30912;30913 30913 3 RGEVPAELR Unmodified 1025.5618 0.56179219 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 1 4 0 1 31.13 31.13 3 0.0012574 6806 TMT1-3 66.664 24.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15565 2934 15368 23841 30914 30914 1 RGGADVNIR Unmodified 956.51518 0.51517635 572 P08621-2;P08621;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 1 4.5 0.5 1 1 24.852 24.852 3 0.0071164 4367 TMT1-3 76.943 46.214 46.791 43.089 34.191 67.831 62.519 68.572 44 44 37 65 65 66 2 2 2 2 2 2 3355.2 15566 572 15369 23842;23843 30915;30916 30915 2 RGGFEEPVLLK Unmodified 1243.6925 0.69247202 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 6 0 1 50.232 50.232 3 0.0016011 14191 TMT1-5 86.814 62.022 252.51 347.09 368.32 319.9 362.3 322.25 239 348 374 319 371 312 2 2 2 2 2 2 58897 15567 3006 15370 23844 30917;30918 30917 2 RGGPNYQEGLR Unmodified 1245.6214 0.62143234 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 1 4 0 1 28.026 28.026 3 1.8341E-05 5621 TMT1-3 115.33 91.297 38.283 35.253 28.11 21.553 43.466 45.664 36 36 29 22 44 44 1 1 1 1 1 1 3112 15568 1283 15371 23845 30919 30919 1 RGILTLK Unmodified 799.52797 0.52797287 1357;1479;1488;2044;9;615 P60709;P63261;P68032;P63267;P62736;P68133;A5A3E0;P0CG39;Q6S8J3 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTA1;POTEF;POTEJ;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member J;POTE ankyrin domain family member E no no 0 0 0 0 1 5 4 1 1 44.534 44.534 3 0.0028559 10748 TMT 1-phospho 113.71 36.424 1266.3 2095 1447.9 1328.9 1290 1930 1198 2072 1515 1317 1355 1845 3 3 3 3 3 3 508040 15569 1357;1479;1488;9;615;2044 15372 23846;23847 30920;30921;30922 30921 3 RGLDVNK Unmodified 800.45045 0.45045083 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 6 0 1 32.331 32.331 3 0.016421 7098 TMT1-5 80.684 14.002 307.85 332.13 275.93 246.06 222.77 311.31 290 336 285 244 234 298 1 1 1 1 1 1 70651 15570 2913 15373 23848 30923 30923 1 RGLEVNK Unmodified 814.4661 0.4661009 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 1 6 0 1 32.268 32.268 3 0.0035406 7075 TMT1-5 104.44 32.722 1053.3 1335.3 910.05 849.29 1008 1400.7 993 1336 955 844 1047 1341 2 2 2 2 2 2 149740 15571 971 15374 23849 30924;30925 30924 2 RGLEVSK Unmodified 787.4552 0.45520186 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 1 6 0 1 32.817 32.817 3 0.0043153 7300 TMT1-5 102.46 81.563 138.33 198.94 207.48 159.44 163.46 235.19 131 199 210 160 171 225 1 1 1 1 1 1 14746 15572 2512 15375 23850 30926 30926 1 RGNVAGDSK Unmodified 902.45699 0.45699277 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 5 0 1 22.557 22.557 3 0.011704 3719 TMT1-4 71.066 56.909 38.251 35.164 33.557 20.839 64.198 21.62 36 36 34 22 63 22 1 1 1 1 1 1 3440.5 15573 1490 15376 23851 30927 30927 1 RGPPPPPR Unmodified 872.49807 0.49806973 1056 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 1 8 0 1 21.092 21.092 3 0.037367 3479 TMT1-7 60.59 9.5305 7.3978 11.044 9.6697 10.112 12.853 8.1612 7 11 10 10 13 8 1 1 1 1 1 1 420.4 15574 1056 15377 23852 30928 30928 1 RGQSFYVQIDFSR Unmodified 1601.795 0.79503961 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 8 0 1 53.189 53.189 3 1.8986E-11 14851 TMT1-7 146.84 119.18 84.547 154.58 86.386 126.18 165.31 104.01 80 152 94 123 167 102 1 1 1 1 1 1 21332 15575 393 15378 23853 30929 30929 1 RGTLVAER Unmodified 900.51411 0.51411372 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 1 5 0 1 24.772 24.772 3 0.0015503 4165 TMT1-4 70.816 13.005 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15576 2512 15379 23854 30930 30930 1 RHLHKNMAAMTHFK Oxidation (M) 1736.8715 0.87153256 3069 yes no 0 0 1 0 2 9 0 1 80.749 80.749 4 0.047642 23825 TMT1-8 47.201 15.973 130.14 179.06 156.63 114.32 166.76 169 123 179 160 116 170 163 1 1 1 1 1 1 20889 + 15577 3069 15380 23855 30931 30931 349 1 RHPDYSVVLLLR Unmodified 1466.8358 0.83578221 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 1 8.5 0.5 2 2 50.278 50.278 3;4 2.4571E-08 11874 TMT1-8 130.1 71.887 565.38 685.26 517.35 394.15 591.62 733.58 533 688 535 399 607 704 5 5 5 5 5 5 84777 + 15578 28 15381 23856;23857;23858;23859 30932;30933;30934;30935;30936 30936 5 RHPYFYAPELLFFAK Unmodified 1897.9879 0.98792576 28 CON__P02768-1;P02768 ALB Serum albumin yes no 0 0 0 0 1 9 0 2 69.021 69.021 4;5 1.0413E-05 19350 TMT1-8 82.925 48.312 474.34 780.65 588.68 520.72 493.27 808.88 449 773 611 517 521 772 4 4 4 4 4 4 81979 + 15579 28 15382 23860;23861 30937;30938;30939;30940 30938 4 RHVFGESDELIGQK Unmodified 1613.8162 0.81616898 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 1 5 0 1 42.651 42.651 4 2.2544E-07 11092 TMT1-4 105.65 82.932 330.19 390.48 259.98 304.48 305.1 394.24 311 392 276 298 318 378 1 1 1 1 1 1 29004 15580 1352 15383 23862 30941 30941 1 RIDTNLNK Unmodified 972.53524 0.53524309 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 1 7 0 1 36.684 36.684 3 0.035471 8283 TMT1-6 61.48 20.978 170.09 140.33 148.65 146.84 147.89 126.9 160 145 152 145 152 123 1 1 1 1 1 1 16065 15581 834 15384 23863 30942 30942 1 RIEDNLPAGEE Unmodified 1241.5888 0.58879481 185 O43617;O43617-2 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 0 0 0 0 1 2 0 1 42.362 42.362 2 0.00093659 11898 TMT1-1 72.321 56.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15582 185 15385 23864 30943 30943 1 RIEELNK Unmodified 900.50288 0.50288033 324 O94776;Q13330-2;Q9BTC8-2;Q9BTC8;Q13330-3;Q13330 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 yes no 0 0 0 0 1 5 0 1 35.906 35.906 3 0.0086165 8386 TMT1-4 91.783 4.5315 130.4 135.51 151.22 100.06 128.05 127.46 123 138 152 102 131 123 1 1 1 1 1 1 9169 15583 324 15386 23865 30944 30944 1 RIEGLDSNVWIEFTK Unmodified 1805.9312 0.93119874 2058 Q6YP21;Q6YP21-3;Q6YP21-2 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 0 0 0 0 1 7 0 1 69.328 69.328 3 0.011613 21115 TMT1-6 53.565 35.2 85.113 78.45 55.692 43.28 79.39 67.025 80 80 58 44 80 65 1 1 1 1 1 1 6629.8 15584 2058 15387 23866 30945 30945 1 RIEGSGDQIDTYELSGGAR Unmodified 2022.9607 0.96066097 1591 Q05193-3;Q05193;Q05193-5;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 0 1 3 0 1 45.038 45.038 3 1.428E-14 13297 TMT1-2 116.73 115.62 46.736 42.937 43.536 28.285 43.449 37.136 44 44 44 29 44 36 1 1 1 1 1 1 11565 15585 1591 15388 23867 30946 30946 1 RIEGSGDQVDTLELSGGAR Unmodified 1958.9657 0.96574634 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 1 3 0 1 44.973 44.973 3 8.747E-10 13247 TMT1-2 100.02 95.514 53.997 88.135 47.375 50.443 131.65 88.985 51 87 51 51 131 87 1 1 1 1 1 1 17069 15586 1226 15389 23868 30947 30947 1 RIEIAEVVPTEGLVSILK Unmodified 1965.151 0.15102792 2039 Q6PJW8 CNST Consortin yes yes 0 0 0 0 1 7 0 2 75.69 75.69 3;4 0.00079848 23665 TMT1-6 64.203 47.897 92.059 131.41 105.7 87.323 136.19 120.84 87 131 109 88 138 117 2 2 2 2 2 2 23245 15587 2039 15390 23869;23870 30948;30949 30948 2 RIEIQPK Unmodified 882.5287 0.52870115 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 1 7 0 1 37.629 37.629 3 0.029399 8587 TMT1-6 69.825 20.289 146.55 142.13 135.56 100.72 142.68 127.05 138 145 138 102 145 123 1 1 1 1 1 1 16232 15588 1021 15391 23871 30950 30950 1 RIEQDMLEK Unmodified 1160.586 0.58595803 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 1 5 0 1 43.746 43.746 3 0.0015251 11533 TMT1-4 64.64 39.298 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15589 1635 15392 23872 30951 30951 1 RIEYIEAR Unmodified 1048.5665 0.56654322 2268 Q8WUW1;Q8WUW1-2 BRK1 Protein BRICK1 yes no 0 0 0 0 1 4 0 1 35.577 35.577 3 0.0007736 8537 TMT1-3 136.57 85.221 84.776 116.37 80.287 144.53 81.001 97.893 80 116 87 138 87 94 1 1 1 1 1 1 26055 15590 2268 15393 23873 30952 30952 1 RIILLVK Unmodified 853.61131 0.61130857 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 9 0 1 51.847 51.847 3 0.018099 12523 TMT1-8 91.626 8.012 169.96 163.72 149.76 90.312 186.3 211.08 160 167 152 94 189 203 1 1 1 1 1 1 11344 15591 1260 15394 23874 30953 30953 1 RINDEIER Unmodified 1043.536 0.53597137 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 1 2 0 1 29.896 29.896 3 0.0010461 7004 TMT1-1 132.01 91.023 77.411 70.877 94.225 88.041 76.269 98.028 73 73 95 87 80 94 2 2 2 2 2 2 14840 15592 1211 15395 23875 30954;30955 30955 2 RIPADTFAALK Unmodified 1201.6819 0.68190733 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 8 0 1 52.418 52.418 3 7.9901E-05 14602 TMT1-7 105.65 83.451 206.92 359.33 265.38 239.07 336.99 253.69 196 355 276 239 341 247 2 2 2 2 2 2 21406 15593 1139 15396 23876 30956;30957 30957 2 RIPEEILGK Unmodified 1053.6182 0.61824444 1037 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 0 0 0 0 1 7 0 1 49.967 49.967 3 0.023296 13562 TMT1-6 62.271 36.152 146.81 135.31 97.281 94.842 111.78 151.38 138 138 102 94 116 145 1 1 1 1 1 1 8173.7 15594 1037 15397 23877 30958 30958 1 RIPLAEWESR Unmodified 1255.6673 0.6673199 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 1 6.5 0.5 1 1 47.475 47.475 3 3.4577E-07 13046 TMT1-5 163.46 127.05 246.15 480.51 241.6 240.84 318.54 392.79 233 471 261 239 328 377 2 2 2 2 2 2 37792 15595 979 15398 23878;23879 30959;30960 30959 2 RIQLVEEELDR Unmodified 1398.7467 0.74669243 519;520;521;1486;595;1487;593;518;551;552;592;594 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-2;P09493-3;P09493-10;P09493-5;P09493-8;P06753;P67936;P67936-2;P07951;CON__Q3SX28;P07951-2 TPM3;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 1 3 1.41 1 1 1 1 1 49.268 49.268 3 7.4405E-33 14998 TMT1-2 215.77 124.01 1422.2 1936.6 1705.9 1370.1 1538.4 1737.4 1344 1937 1747 1373 1588 1671 8 8 8 8 8 8 589470 + 15596 519;520;521;592;593;594;595;518;1486;1487;551;552 15399 23880;23881;23882;23883;23884 30961;30962;30963;30964;30965;30966;30967;30968 30965 8 RISGLIYEETR Unmodified 1335.7147 0.71466402 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 5 0 1 44.717 44.717 3 9.9933E-05 11898 TMT1-4 104.17 59.311 92.246 131.93 73.899 96.083 119.86 127.7 87 131 80 94 123 123 1 1 1 1 1 1 13260 15597 1443 15400 23885 30969 30969 1 RIVEVEQDNK Unmodified 1228.6412 0.64116473 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 1 4 0 1 35.785 35.785 3 0.0076203 8627 TMT1-3 73.666 39.78 91.998 146.35 103.45 117.8 149.99 104.45 87 145 109 116 152 102 1 1 1 1 1 1 8847.6 15598 2309 15401 23886 30970 30970 1 RLAAAEETAVSPR Unmodified 1369.7314 0.73137672 2539 Q9BUH6 C9orf142 Protein PAXX yes yes 0 0 0 0 1 4 0 1 34.325 34.325 3 0.00060117 8081 TMT1-3 81.879 48.684 77.393 93.493 78.003 57.402 71.412 67.252 73 94 80 58 73 65 1 1 1 1 1 1 9990.5 15599 2539 15402 23887 30971 30971 1 RLAPEYEAAATR Unmodified 1346.6943 0.69426293 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 4 0 1 34.676 34.676 3 0.023132 8182 TMT1-3 54.094 49.113 130.41 174.39 116.74 117.29 135.1 112.34 123 174 123 116 138 109 1 1 1 1 1 1 15608 15600 955 15403 23888 30972 30972 1 RLAPITSDPTEATAVGAVEASFK Unmodified 2330.2118 0.21179027 706 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 1 6 0 1 66.156 66.156 4 3.0921E-06 20464 TMT1-5 67.4 50.973 37.97 74.317 47.553 66.871 71.233 59.795 36 73 51 65 73 58 1 1 1 1 1 1 9615.3 15601 706 15404 23889 30973 30973 1 RLAQDGAHVVVSSR Unmodified 1493.8063 0.806273 2538 Q9BTZ2;Q9BTZ2-8;Q9BTZ2-4;Q9BTZ2-3;Q9BTZ2-7;Q9BTZ2-2;Q9BTZ2-5 DHRS4 Dehydrogenase/reductase SDR family member 4 yes no 0 0 0 0 1 6 0 1 31.44 31.44 4 0.045055 6792 TMT1-5 37.886 20.077 76.983 163.58 87.622 87.169 143.56 119.56 73 160 94 87 145 116 1 1 1 1 1 1 1872.5 15602 2538 15405 23890 30974 30974 1 RLCENIAGHLK Unmodified 1309.6925 0.69248879 457 P04040 CAT Catalase yes yes 0 0 0 0 1 7 0 1 39.505 39.505 4 0.0060498 9364 TMT1-6 65.179 31.954 92.156 139.23 82.807 56.313 114.07 136.39 87 138 87 58 116 131 1 1 1 1 1 1 5011.8 15603 457 15406 23891 30975 30975 1 RLDEEEEDNEGGEWER Unmodified 1990.8141 0.81405631 2476 Q99613-2;Q99613 EIF3C Eukaryotic translation initiation factor 3 subunit C yes no 0 0 0 0 1 2 0 1 40.491 40.491 3 1.8333E-06 11115 TMT1-1 96.153 85.668 23.293 28.814 28.218 29.494 27.688 37.586 22 29 29 29 29 36 1 1 1 1 1 1 5750.9 15604 2476 15407 23892 30976 30976 1 RLDEELEDAEK Unmodified 1345.6361 0.63613893 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 1 2 0 2 47.249 47.249 3;4 3.285E-07 13813 TMT1-1 142.51 100.03 307.95 307.57 281.28 280.37 240.81 349.17 290 313 290 276 254 334 3 3 3 3 3 3 27709 15605 1810 15408 23893;23894 30977;30978;30979 30977 3 RLDEYTQEEIDAFPR Unmodified 1880.8905 0.89045614 2575 Q9BYD1 MRPL13 39S ribosomal protein L13, mitochondrial yes yes 0 0 0 0 1 3 0 1 57.223 57.223 3 8.4467E-05 18076 TMT1-2 86.578 81.545 30.921 13.516 21.499 30.039 20.041 46.332 29 15 22 29 22 44 1 1 1 1 1 1 5985.6 15606 2575 15409 23895 30980 30980 1 RLDFEWTLK Unmodified 1206.6397 0.63970816 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 8 0 1 62.292 62.292 3 0.00075803 18402 TMT1-7 103.87 88.9 277.98 348.69 233.42 258.44 280.05 362.98 262 349 247 254 291 348 2 2 2 2 2 2 58523 15607 772 15410 23896 30981;30982 30981 2 RLDGSVDFK Unmodified 1035.5349 0.53490874 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 5 2.35 1 2 1 44.773 44.773 3 0.00026573 11930 TMT1-5 127.92 72.367 2715.2 3477.2 2921.6 2655.2 3570.1 4487.3 2563 3486 3015 2650 3677 4305 6 6 6 6 6 6 486010 15608 439 15411 23897;23898;23899;23900 30983;30984;30985;30986;30987;30988 30985 6 RLDLDAAK Unmodified 900.50288 0.50288033 2984 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 1 6 0 1 41.115 41.115 3 0.0064797 10601 TMT1-5 88.496 39.701 324.76 449.13 400.97 291.54 255.59 452.15 307 449 409 293 272 431 1 1 1 1 1 1 27359 15609 2984 15412 23901 30989 30989 1 RLDLDACK Unmodified 989.49641 0.49641475 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 1 6 0 1 40.719 40.719 3 0.0031274 10474 TMT1-5 99.815 57.216 202.62 202.92 219.2 150.96 112.19 308.07 191 207 221 152 124 292 1 1 1 1 1 1 9914.6 15610 2723 15413 23902 30990 30990 1 RLDQVEQELNELR Unmodified 1640.8482 0.84819739 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 1 3 0 1 60.382 60.382 3 0.0096303 19372 TMT1-2 61.649 45.425 30.703 51.764 25.725 53.705 26.832 30.148 29 51 29 51 29 29 1 1 1 1 1 1 3424.5 15611 2944 15414 23903 30991 30991 1 RLDYITAEIK Unmodified 1220.6765 0.6764876 134 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 0 1 6 0 1 53.011 53.011 3 0.00018725 15336 TMT1-5 112.51 79.9 146.23 190.89 148.24 90.545 178.72 187.85 138 191 152 94 181 181 1 1 1 1 1 1 15498 15612 134 15415 23904 30992 30992 1 RLEAAYLDLQR Unmodified 1346.7306 0.73064844 265 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 1 5.5 0.5 1 1 48.51 48.51 3 4.6355E-05 13532 TMT1-4 110.92 99.826 230.59 342.8 267.56 209.75 262.06 312.32 218 341 276 211 270 300 2 2 2 2 2 2 61285 15613 265 15416 23905;23906 30993;30994 30993 2 RLEAFLTQK Unmodified 1104.6291 0.62914348 1569;1037 Q02750;Q02750-2;P36507 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 0 0 0 0 1 9 0 1 51.416 51.416 3 0.035621 12350 TMT1-8 49.189 10.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15614 1569;1037 15417 23907 30995 30995 1 RLEAGDHPVELLAR Unmodified 1574.8529 0.85288884 590 P09486 SPARC SPARC yes yes 0 0 0 0 1 5 0.816 1 1 1 41.65 41.65 4 1.0078E-14 10671 TMT1-4 133.48 104.67 687.34 952.56 711.11 674.23 776.38 948.97 649 950 741 669 803 911 4 4 4 4 4 4 200770 15615 590 15418 23908;23909;23910 30996;30997;30998;30999 30998 4 RLEALAAEFSSNWQK Unmodified 1748.8846 0.8845829 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 1 8 0 1 67.127 67.127 4 0.0051002 20325 TMT1-7 55.011 38.131 46.61 81.439 32.211 36.368 56.38 76.209 44 80 36 36 58 73 1 1 1 1 1 1 8035 15616 2859 15419 23911 31000 31000 1 RLEDLSESIVNDFAYMK Unmodified 2028.9826 0.98264196 1197 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 1 6 0 1 79.583 79.583 3 0.00068485 25752 TMT1-5 67.994 52.228 23.209 36.136 36.069 13.415 44.133 37.117 22 36 36 15 44 36 1 1 1 1 1 1 10439 15617 1197 15420 23912 31001 31001 1 RLEDQLAGLQQELAALALK Unmodified 2079.1688 0.16880325 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 1 8 0 1 87.054 87.054 4 1.9871E-23 28017 TMT1-7 133.93 109.94 116.05 99.558 68.468 88.883 113.08 121.5 109 102 73 87 116 117 2 2 2 2 2 2 16365 15618 2859 15421 23913 31002;31003 31003 2 RLEEEAK Unmodified 873.4556 0.45559579 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 1 3 0 1 29.616 29.616 3 0.028086 7129 TMT1-2 70.856 0 108.63 91.696 59.536 106.5 76.19 75.644 102 94 65 102 80 73 1 1 1 1 1 1 28415 15619 2309 15422 23914 31004 31004 1 RLEEEEK Unmodified 931.46108 0.4610751 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q03001-8;Q03001-14;Q03001;O15169-2;O15169;Q03001-9 MACF1;DST;AXIN1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin;Axin-1 yes no 0 0 0 0 1 2 1 1 1 29.705 29.705 3 0.01369 7293 TMT1-2 84.568 0 445.76 423.95 464.93 454.68 502.73 530.38 420 434 474 450 518 511 2 2 2 2 2 2 51632 15620 2935 15423 23915;23916 31005;31006 31006 2 RLEEELR Unmodified 943.50869 0.50869399 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 1 2 0 1 33.157 33.157 3 0.0024301 8251 TMT1-1 124.08 79.359 68.432 155.63 88.841 71.49 159.69 127.63 65 152 94 73 160 124 2 2 2 2 2 2 6309.9 15621 1609 15424 23917 31007;31008 31008 2 RLEEIPLIK Unmodified 1109.6808 0.6808447 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 1 7 0 1 54.162 54.162 3 0.00059026 15148 TMT1-6 111.06 19.473 209.06 276.98 154.69 187.02 201.12 228.78 197 276 167 183 208 220 1 1 1 1 1 1 19993 15622 1754 15425 23918 31009 31009 1 RLEEPEEPK Unmodified 1125.5666 0.5666028 303 O75822;O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 1 2.5 0.5 1 1 34.921 34.921 3 7.5709E-05 9193 TMT1-2 94.409 56.934 77.502 102.43 52.212 89.961 107.31 74.756 73 102 58 87 109 73 1 1 1 1 1 1 9449.1 15623 303 15426 23919;23920 31010;31011 31011 2 RLEEPSLR Unmodified 998.55089 0.55089316 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 4.5 0.5 1 1 34.445 34.445 3 0.0013806 7787 TMT1-4 72.607 26.273 92.471 92.621 69.341 81.291 107.2 89.683 87 94 73 80 109 87 1 1 1 1 1 1 24332 15624 68 15427 23921;23922 31012;31013 31013 2 RLEEQAAQHK Unmodified 1208.6262 0.62618337 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4.5 0.5 1 1 27.176 27.176 4 0.0053784 4950 TMT1-4 69.979 41.811 75.854 154.87 104.4 86.73 113.73 105.49 72 152 109 87 116 102 2 2 2 2 2 2 10616 15625 1833 15428 23923;23924 31014;31015 31015 2 RLEESDVLQEAR Unmodified 1443.7318 0.73177065 184 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 1 2 0 1 41.907 41.907 3 0.0036701 11733 TMT1-1 72.681 47.034 69.117 48.526 64.483 58.07 78.71 67.044 65 51 65 58 80 65 1 1 1 1 1 1 8793.8 15626 184 15429 23925 31016 31016 1 RLELLLSAGDSGTFFCK Unmodified 1912.9717 0.97168334 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 1 9 0 1 70.87 70.87 3 7.8772E-26 19988 TMT1-8 139.46 119.08 199.94 274.97 247.9 211.51 230.38 318.56 189 275 254 211 240 305 3 3 3 3 3 3 75328 15627 377 15430 23926 31017;31018;31019 31017 3 RLENAGSLK Unmodified 986.55089 0.55089316 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 1 6 0 1 34.923 34.923 3 0.0034449 8164 TMT1-5 87.568 2.0347 108.04 168.84 93.652 135.53 110.17 143.96 102 167 102 131 116 138 1 1 1 1 1 1 4541.1 15628 1870 15431 23927 31020 31020 1 RLENNHAQLLR Unmodified 1362.748 0.74802984 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 1 6.2 2.79 1 1 1 1 1 29.565 29.565 3;4 6.1939E-13 6046 TMT1-5 177.57 129.57 301.21 427.16 410.01 339.35 300.07 463.68 285 427 418 338 317 443 6 6 6 6 6 6 73235 15629 372 15432 23928;23929;23930;23931;23932 31021;31022;31023;31024;31025;31026 31022 6 RLESLASR Unmodified 930.52468 0.52467841 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 1 6 0 1 31.546 31.546 3 0.018181 6814 TMT1-5 72.325 42.558 61.538 72.595 55.459 59.062 54.567 98.647 58 73 58 58 58 94 1 1 1 1 1 1 2353.2 15630 2306 15433 23933 31027 31027 1 RLEVDIDIK Unmodified 1099.6237 0.62372375 437 P02671;P02671-2;CON__P02672 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 5.5 0.5 1 1 53.154 53.154 3 8.0702E-05 15249 TMT1-4 143.28 69.011 2178.5 2813.6 2075.6 1883.7 2407.5 3310.5 2055 2815 2162 1878 2493 3170 5 5 5 5 5 5 199010 15631 437 15434 23934;23935 31028;31029;31030;31031;31032 31028 5 RLEVLDSTK Unmodified 1059.5924 0.59242362 1147 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 0 1 6 0 1 42.747 42.747 3 0.021796 11228 TMT1-5 63.073 25.729 250.54 528.15 365.56 283.96 306.29 417.66 238 518 380 285 319 400 1 1 1 1 1 1 51022 15632 1147 15435 23936 31033 31033 1 RLFAQLAGDDMEVSATELMNILNK Unmodified 2678.3408 0.34077231 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 1 8 0 1 91.113 91.113 4 0.02252 29637 TMT1-7 34.658 22.104 16.063 6.3649 0 7.2447 21.602 31.364 15 7 0 7 22 30 1 1 0 1 1 1 4119.6 15633 475 15436 23937 31034 31034 1 RLHASKIK Phospho (STY) 1031.5641 0.56411418 3096 yes yes 0 0 0 1 2 9 0 1 53.038 53.038 3 0.047642 12953 TMT1-8 52.58 17.86 485.32 526.81 580.65 458.65 622.38 513.11 458 535 587 462 632 498 1 1 1 1 1 1 85910 + 15634 3096 15437 23938 31035 31035 1 RLIELYK Unmodified 933.56475 0.56475231 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 1 8 0 1 48.377 48.377 3 0.0086165 12966 TMT1-7 91.783 24.319 145.4 263.04 227.13 165.63 178.91 325.35 138 260 232 167 189 310 1 1 1 1 1 1 14734 15635 1053 15438 23939 31036 31036 1 RLLEEELR Unmodified 1056.5928 0.59275797 3067 yes no 0 0 0 0 1 4 0 1 41.857 41.857 3 0.011571 11060 TMT1-3 78.264 0 85.082 85.919 54.546 58.959 62.964 67.493 80 87 58 58 65 65 1 1 1 1 1 1 5159.3 + 15636 3067 15439 23940 31037 31037 1 RLNPDGK Unmodified 798.4348 0.43480077 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 1 6 0 1 28.854 28.854 3 0.047292 5843 TMT1-5 60.589 32.191 108.66 52.916 87.892 56.551 85.303 90.308 102 58 87 58 87 87 1 1 1 1 1 1 2023.2 15637 886 15440 23941 31038 31038 1 RLPDAHSDYAR Unmodified 1299.632 0.63199703 2443 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 1 4 0 1 28.708 28.708 4 0.011764 5817 TMT1-3 58.511 52.279 38.177 59.78 25.211 53.608 33.616 45.945 36 59 29 51 36 44 1 1 1 1 1 1 4779.5 15638 2443 15441 23942 31039 31039 1 RLPENLYNDR Unmodified 1288.6524 0.65239812 715 P14927;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 0 1 5 0 1 39.005 39.005 3 0.003363 9635 TMT1-4 83.226 53.682 169.25 189.79 248.38 173.16 234.18 289.67 160 193 248 176 241 278 1 1 1 1 1 1 21110 15639 715 15442 23943 31040 31040 1 RLPGDIQVVPIGVGPNANVQELER Unmodified 2569.3976 0.39763399 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 6 0 1 64.136 64.136 3 7.257E-07 19722 TMT1-5 76.351 61.462 37.844 81.521 62.644 58.466 63.499 52.554 36 80 65 58 65 51 1 1 1 1 1 1 28938 15640 471 15443 23944 31041 31041 1 RLPPQQIEK Unmodified 1107.64 0.64004252 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 6.5 0.5 2 2 38.451 38.451 3 0.0009505 8964 TMT1-6 102.52 46.807 369.25 390.32 366.65 383.2 430.61 502.59 348 396 378 378 445 483 3 3 3 3 3 3 22472 15641 1144;1145 15444 23945;23946;23947;23948 31042;31043;31044;31045 31044 4 RLQAAGNAVK Unmodified 1026.5934 0.59342667 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 1 8 0 1 31.529 31.529 3 1.4941E-05 6324 TMT1-7 146.88 96.08 161.83 201.36 222.8 174.14 204.94 195.63 153 203 225 175 210 189 2 2 2 2 2 2 36469 15642 3010;3014 15445 23949 31046;31047 31046 2 RLQEALER Unmodified 1013.5618 0.56179219 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 4.5 0.5 1 1 32.881 32.881 3 0.0017954 7499 TMT1-3 114.86 21.261 153.85 180.96 138.68 147.61 138.64 212.44 145 182 145 145 146 203 2 2 2 2 2 2 24013 15643 1597 15446 23950;23951 31048;31049 31048 2 RLQEETGAK Unmodified 1030.5407 0.5407224 1610;1991 Q5VWX1;Q07666;Q07666-2 KHDRBS2;KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 1 no no 0 0 0 0 1 5 0 1 28.978 28.978 3 0.011483 5682 TMT1-4 71.349 20.742 46.801 50.672 26.083 45.317 64.91 29.062 44 51 29 44 65 29 1 1 1 1 1 1 2036.7 15644 1991;1610 15447 23952 31050 31050 1 RLQSIGTENTEENR Unmodified 1645.802 0.80197548 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 3 0 1 31.49 31.49 3 2.4492E-10 7925 TMT1-2 124.2 99.77 30.732 44.288 27.255 29.424 34.471 53.382 29 44 29 29 36 51 1 1 1 1 1 1 10414 15645 459 15448 23953 31051 31051 1 RLSEDYGVLK Unmodified 1178.6295 0.62953741 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 1 6 0 1 45.368 45.368 3 0.00017493 12295 TMT1-5 113.69 69.075 351.25 549.97 372.41 453.81 377.4 495.58 332 545 395 442 397 475 1 1 1 1 1 1 45735 15646 989 15449 23954 31052 31052 1 RLTAEDLFEAR Unmodified 1319.6834 0.68336389 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 5 0 1 51.506 51.506 3 6.6473E-06 14573 TMT1-4 119.21 98.181 68.85 86.637 77.054 88.907 84.621 66.875 65 87 80 87 87 65 1 1 1 1 1 1 8893 15647 1833 15450 23955 31053 31053 1 RLTDADAMK Unmodified 1019.507 0.50697943 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 5 0 1 37.179 37.179 3 0.016851 8934 TMT1-4 65.719 48.694 214.94 312.76 218.08 196.81 235.06 262.99 203 311 228 196 242 253 1 1 1 1 1 1 13281 15648 888 15451 23956 31054 31054 1 RLTPTEVK Unmodified 942.54983 0.54983053 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 1 7 0 1 35.415 35.415 3 0.036858 7770 TMT1-6 60.828 39.322 108.34 90.903 108.09 86.381 120.56 120.22 102 94 109 87 123 116 1 1 1 1 1 1 8953.3 15649 891 15452 23957 31055 31055 1 RLTVSSLQESGLK Unmodified 1416.7936 0.79364262 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6.8 2.93 1 3 1 48.551 48.551 3;4 3.9911E-19 11038 TMT1-8 169.54 107.14 1377.6 1767.1 1773.5 1250.1 1661.2 1918.3 1302 1776 1795 1269 1706 1844 5 5 5 5 5 5 811890 15650 831 15453 23958;23959;23960;23961;23962 31056;31057;31058;31059;31060 31060 5 RLWADHGVQACFGR Unmodified 1671.8052 0.80522714 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 1 9 0 1 43.134 43.134 4 0.046348 9155 TMT1-8 30.862 14.608 130.48 159.49 116.91 133.44 147.7 150.36 123 160 123 131 152 145 1 1 1 1 1 1 6656.9 15651 480 15454 23963 31061 31061 1 RLWDVSCDLLGLPID Unmodified 1770.8975 0.89745577 2246 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 1 6.5 0.5 1 1 88.319 88.319 3 1.5172E-05 29134 TMT1-5 94.717 77.973 23.324 51.718 58.239 29.104 11.451 54.039 22 51 58 30 14 51 1 2 2 2 2 2 19271 15652 2246 15455 23964;23965 31062;31063 31062 2 RMDQMMPGK 2 Oxidation (M) 1124.4777 0.47766991 1580 Q03989-5;Q03989 ARID5A AT-rich interactive domain-containing protein 5A yes no 0 0 2 0 1 3 0 1 51.624 51.624 2 0.03098 15876 TMT1-2 44.135 20.578 38.007 34.484 75.183 34.632 12.501 46.547 36 36 73 36 15 44 1 1 1 1 1 1 3752.2 15653 1580 15456 23966 31064 31064 254;255;256 1 RMDSVTWQEGK Unmodified 1335.6241 0.62413446 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 1 6 0 1 42.321 42.321 3 0.0050346 11139 TMT1-5 74.537 39.65 122.98 143.84 128.37 92.467 139.5 230.54 116 145 131 94 145 220 1 1 1 1 1 1 8880.5 15654 1969 15457 23967 31065 31065 1 RMEQCVEK Unmodified 1078.4899 0.48994916 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 1 5 0 1 30.66 30.66 3 0.0066185 6331 TMT1-4 88.177 51.73 84.536 115.7 121.14 102.72 82.374 113.84 80 116 123 102 87 109 1 1 1 1 1 1 10480 15655 50 15458 23968 31066 31066 1 RMGESDDSILR Unmodified 1277.6034 0.60339901 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 1 3 0 1 36.729 36.729 3 7.4083E-07 10009 TMT1-2 101.35 84.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15656 1476 15459 23969 31067 31067 1 RMPCAEDYLSVVLNQLCVLHEK Unmodified 2673.3077 0.30769804 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 9 0 1 80.506 80.506 5 0.00020311 23801 TMT1-8 50.752 31.708 76.388 71.091 85.556 88.17 96.879 167.8 72 73 87 87 102 160 2 2 2 2 2 2 13426 + 15657 28 15460 23970 31068;31069 31069 2 RNDFQLIGIQDGYLSLLQDSGEVR Unmodified 2735.3879 0.38785716 1477 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 0 1 6 0 1 77.886 77.886 3 5.7033E-23 25103 TMT1-5 118.57 104.98 38.161 51.104 35.103 37.545 42.73 45.685 36 51 37 37 44 44 2 2 2 2 2 2 30038 15658 1477 15461 23971 31070;31071 31070 2 RNEFLGELQK Unmodified 1232.6513 0.65133548 1752;2757 Q14141-2;Q14141-4;Q14141;Q9NVA2 SEPT6;SEPT11 Septin-6;Septin-11 no no 0 0 0 0 1 6 0 2 47.605 47.605 2;3 0.00014205 13261 TMT1-5 116.84 30.594 208.56 385.85 327.3 270.53 385.89 371.68 198 381 336 272 393 359 2 2 2 2 2 2 95047 15659 1752;2757 15462 23972;23973 31072;31073 31073 2 RNFAELK Unmodified 876.48175 0.48175096 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 1 7 0 1 39.142 39.142 3 0.013445 9234 TMT1-6 84.916 62.086 68.742 110.08 75.296 96.807 76.929 67.095 65 109 80 94 80 65 1 1 1 1 1 1 4832.1 15660 775 15463 23974 31074 31074 1 RNTTIPTK Unmodified 929.52943 0.52942943 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 1 8 0 1 30.482 30.482 3 0.022054 5989 TMT1-7 68.846 30.76 169.3 236.34 200.45 142.13 234.26 237.43 160 236 205 145 238 229 1 1 1 1 1 1 12672 15661 641 15464 23975 31075 31075 1 RPAILHSLK Unmodified 1033.6396 0.63964859 1978 Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q9Y2K9 STXBP5;STXBP5L Syntaxin-binding protein 5;Syntaxin-binding protein 5-like yes no 0 0 0 0 1 9 0 1 37.657 37.657 4 0.028301 7280 TMT1-8 42.864 27.483 84.884 77.811 94.813 40.38 109.59 74.691 80 80 94 44 109 73 1 1 1 1 1 1 3465.6 15662 1978 15465 23976 31076 31076 1 RPCFSALEVDETYVPK Unmodified 1909.9244 0.9243988 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 5.17 2.03 1 2 1 2 57.658 57.658 3;4 7.8413E-15 16992 TMT1-5 109.08 94.466 416.81 603.18 489.12 353.6 512.05 637.78 394 601 502 359 526 612 5 5 5 5 5 5 90712 + 15663 28 15466 23977;23978;23979;23980;23981;23982 31077;31078;31079;31080;31081;31082;31083 31081 7 RPDADLK Unmodified 813.43447 0.43446642 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 4.5 0.5 1 1 31.68 31.68 3 0.016582 6801 TMT1-4 80.455 15.618 536.1 845.24 613 560.73 729.57 879.95 507 838 639 559 751 845 2 2 2 2 2 2 131730 15664 920 15467 23983;23984 31084;31085 31085 2 RPDEGWEAR Unmodified 1114.5156 0.51557028 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 1 3 0 1 31.525 31.525 3 0.0052488 7959 TMT1-2 79.659 42.11 99.336 152.91 126.89 116.15 163.39 173.36 94 152 131 116 167 167 1 1 1 1 1 1 10631 15665 2859 15468 23985 31086 31086 1 RPDQQLQGEGK Unmodified 1254.6317 0.63166267 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 1 4.5 0.5 1 1 31.862 31.862 3 0.0016028 6845 TMT1-4 86.803 69.777 169.17 286.71 179.35 159.14 210.58 264.76 160 283 189 159 217 254 2 2 2 2 2 2 29392 15666 2207 15469 23986;23987 31087;31088 31088 2 RPELEDSTLR Unmodified 1214.6255 0.62551466 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2.5 0.5 1 1 34.97 34.97 3 0.00015781 9236 TMT1-2 115.33 81.24 192.82 316.53 145.6 169.71 220.04 218.65 182 312 160 167 225 211 2 2 2 2 2 2 32290 15667 1833 15470 23988;23989 31089;31090 31090 2 RPELGVTLTK Unmodified 1112.6554 0.65535823 1140 P46976;P46976-2;P46976-3 GYG1 Glycogenin-1 yes no 0 0 0 0 1 7 0 1 45.53 45.53 3 0.0072713 11772 TMT1-6 74.237 34.528 160.52 259.06 213.23 165.57 226.29 164.1 152 257 219 167 229 160 1 1 1 1 1 1 15417 15668 1140 15471 23990 31091 31091 1 RPEVDGVR Unmodified 926.49338 0.49337828 376 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes yes 0 0 0 0 1 2 0 1 26.446 26.446 3 0.0091955 5623 TMT1-1 47.603 26.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15669 376 15472 23991 31092 31092 1 RPFGISALIVGFDFDGTPR Unmodified 2064.0793 0.079259959 108 O14818;O14818-2 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 1 9 0 1 77.771 77.771 4 0.000367 22732 TMT1-8 56.9 35.947 7.3124 22.678 14.151 15.29 13.903 31.583 7 22 15 15 15 30 1 1 1 1 1 1 3225.1 15670 108 15473 23992 31093 31093 1 RPFSQCLSTIISPLFAELK Unmodified 2206.182 0.18201047 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 1 9 0 2 81.7 81.7 3;4 3.0309E-12 24181 TMT1-8 103.85 71.67 153.29 240.92 182.1 161.04 158.71 219.33 145 239 189 160 166 210 3 3 3 3 3 3 19329 15671 3054 15474 23993;23994 31094;31095;31096 31094 3 RPGWVEYFIAALR Unmodified 1576.8514 0.85143227 2092 Q7Z434;Q7Z434-2;Q7Z434-5 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 1 9 0 1 77.333 77.333 3 0.0076149 22602 TMT1-8 63.257 38.981 61.105 125.36 83.433 64.46 85.745 66.843 58 123 87 65 87 65 1 1 1 1 1 1 12942 15672 2092 15475 23995 31097 31097 1 RPHFFFPK Unmodified 1074.5763 0.57632005 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 1 9 0 1 44.54 44.54 4 0.00083161 9675 TMT1-8 96.492 61.078 137.97 289.88 369.85 229.75 153.01 445.49 132 287 368 233 171 422 1 1 1 1 1 1 11537 15673 639 15476 23996 31098 31098 1 RPIPHPAYNPK Unmodified 1288.704 0.70403976 818 P20718;P20718-2;P10144 GZMH;GZMB Granzyme H;Granzyme B yes no 0 0 0 0 1 8 0 1 32.106 32.106 4 0.011885 6507 TMT1-7 58.37 31.697 115.57 152.21 103.32 110.16 149.83 119.38 109 152 109 109 152 116 2 2 2 2 2 2 10580 15674 818 15477 23997 31099;31100 31100 2 RPISADSAIMNPASK Unmodified 1556.7981 0.79807608 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 7 0 1 44.69 44.69 3 8.4467E-05 11403 TMT1-6 86.578 58.609 84.964 61.847 94.733 63.668 92.048 97.577 80 65 94 65 94 94 1 1 1 1 1 1 17804 15675 1540 15478 23998 31101 31101 1 RPLEDGDQPDAK Unmodified 1339.6368 0.63680763 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 1 2.5 0.5 1 1 33.606 33.606 3 0.0016093 8496 TMT1-1 78.157 53.304 115.52 175.79 92.879 142.66 140.2 143.11 109 174 102 138 145 138 2 2 2 2 2 2 16496 15676 2361 15479 23999;24000 31102;31103 31102 2 RPLFLAPDFDR Unmodified 1345.7143 0.71427009 2808 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 0 1 8 0 1 56.244 56.244 3 0.0072936 16033 TMT1-7 69.846 54.217 77.444 93.635 69.337 81.735 83.595 106.35 73 94 73 80 87 102 1 1 1 1 1 1 14030 15677 2808 15480 24001 31104 31104 1 RPLIDQVVQTALSETQDPEEVSVTVK Unmodified 2880.508 0.50803187 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 5.75 0.433 1 3 78.356 78.356 3;4;5 1.2067E-16 25226 TMT1-4 100.88 82.631 294.42 416.73 297.97 294.65 300.83 379.44 278 415 312 291 313 364 7 7 7 7 7 7 38065 15678 1540 15481 24002;24003;24004;24005 31105;31106;31107;31108;31109;31110;31111 31106 7 RPLILQLVHVSQEDK Unmodified 1774.0101 0.010117761 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 8 0 1 57.118 57.118 4 7.6306E-05 16401 TMT1-7 82.102 53.805 76.922 147.23 111.71 102.73 111.42 151.39 73 145 116 102 116 145 1 1 1 1 1 1 6389.4 15679 68 15482 24006 31112 31112 1 RPPDEQR Unmodified 896.44643 0.44642809 1846 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 1 2.5 0.5 1 1 17.791 17.791 3 0.0064769 3260 TMT1-1 97.093 46.195 13.762 20.113 14.323 14.152 15.735 10.211 13 20 15 14 16 10 3 3 3 3 3 3 1738.1 15680 1846 15483 24007;24008 31113;31114;31115 31113 3 RPPQECCSPELGR Unmodified 1584.7137 0.71369452 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 1 3 0 1 30.921 30.921 3 0.0011048 7717 TMT1-2 77.776 63.423 30.57 58.949 41.959 43.946 87.458 44.408 29 58 44 44 87 44 1 1 1 1 1 1 5168.1 15681 3051 15484 24009 31116 31116 1 RPPSAFFLFCSEYRPK Unmodified 2000.9931 0.99308749 588 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 0 2 9 0 1 58.49 58.49 4 2.5816E-05 15157 TMT1-8 75.548 50.494 395.28 613.1 491.83 451.86 567.58 686.3 374 609 509 450 585 659 2 2 2 2 2 2 44200 15682 588 15485 24010 31117;31118 31118 2 RPQVTLLDPNEK Unmodified 1408.7674 0.76742787 2867 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 0 1 6 0 1 45.82 45.82 3 0.00084842 12513 TMT1-5 84.365 39.204 129.98 234.73 136.69 122.66 192.94 187.44 123 231 145 123 196 181 1 1 1 1 1 1 16875 15683 2867 15486 24011 31119 31119 1 RPTEICADPQFIIGGATR Unmodified 2001.0102 0.010194116 761 P17655 CAPN2 Calpain-2 catalytic subunit yes yes 0 0 0 0 1 6 0 1 54.22 54.22 3 0.0012508 15794 TMT1-5 61.684 54.447 77.638 71.51 55.463 58.619 78.135 83.05 73 73 58 58 80 80 1 1 1 1 1 1 17074 15684 761 15487 24012 31120 31120 1 RPTELLSNPQFIVDGATR Unmodified 2013.0643 0.064338176 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 7.33 0.471 2 1 58.839 58.839 3;4 6.582E-19 17064 TMT1-6 130.09 115.62 277.05 377.42 364.45 290.31 320.95 408.71 262 378 371 291 333 392 4 4 4 4 4 4 107230 15685 536 15488 24013;24014;24015 31121;31122;31123;31124 31122 4 RPWFAGNK Unmodified 974.50863 0.50863441 591 P09488;P09488-2 GSTM1 Glutathione S-transferase Mu 1 yes no 0 0 0 0 1 9 0 1 41.671 41.671 3 0.046433 8663 TMT1-8 59.8 11.976 99.796 115.33 81.417 118.85 164.07 149.89 94 116 87 116 167 145 1 1 1 1 1 1 7502.5 15686 591 15489 24016 31125 31125 1 RQELEAELAK Unmodified 1185.6354 0.63535107 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 42.694 42.694 3 7.4728E-06 11378 TMT1-3 151.13 134.18 241.44 351.03 240.62 267.79 341.61 294.06 228 349 254 264 348 285 1 1 1 1 1 1 38025 15687 1833 15490 24017 31126 31126 1 RQELLNQK Unmodified 1027.5774 0.57744226 2801 Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 ITSN2 Intersectin-2 yes no 0 0 0 0 1 6 0 1 33.095 33.095 3 0.0010496 7444 TMT1-5 76.1 3.7746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15688 2801 15491 24018 31127 31127 1 RQELVTK Unmodified 872.50797 0.50796571 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 1 6 0 1 31.216 31.216 3 0.01061 6688 TMT1-5 88.948 66.8 387.93 483.29 394.35 338.42 457.41 482.64 366 485 407 339 468 465 1 1 1 1 1 1 32416 15689 478 15492 24019 31128 31128 1 RQESQLR Unmodified 915.48863 0.48862725 2776 Q9NX76 CMTM6 CKLF-like MARVEL transmembrane domain-containing protein 6 yes yes 0 0 0 0 1 3 0 1 17.427 17.427 3 0.0019198 3139 TMT1-2 132.57 50.783 12.747 11.712 11.771 10.006 11.811 8.191 12 12 12 10 12 8 1 1 1 1 1 1 1544.4 15690 2776 15493 24020 31129 31129 1 RQFVQSAK Unmodified 962.52976 0.52976379 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 4 1 1 31.599 31.599 3 0.011571 7003 TMT 1-phospho 78.264 50.492 307.29 263.46 248.8 194.57 256.8 242.12 289 271 254 196 262 234 3 3 3 3 3 3 18576 15691 3010 15494 24021;24022 31130;31131;31132 31130 3 RQGLEQFINK Unmodified 1231.6673 0.6673199 2921 Q9UMY4-1;Q9UMY4;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 1 8 0 1 47.559 47.559 3 0.00016233 12635 TMT1-7 114.89 49.669 146.34 149.09 165.91 114.52 126.32 158.43 138 152 167 116 131 152 1 1 1 1 1 1 11820 15692 2921 15495 24023 31133 31133 1 RQHSSQDVHVVLK Unmodified 1531.8219 0.82192306 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 1 6 0 1 30.093 30.093 5 0.022221 6277 TMT1-5 44.426 25.593 61.351 72.076 87.287 49.69 45.25 169.27 58 73 87 51 51 160 1 1 1 1 1 1 3324.3 15693 2934 15496 24024 31134 31134 1 RQLEEAEEEAQR Unmodified 1486.7012 0.7011988 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 1.67 0.471 1 2 36.204 36.204 2;3 9.3011E-26 9426 TMT1-1 200.05 162.33 565.17 751.79 675.46 495.76 499.05 704.24 534 753 689 499 522 674 4 4 4 4 4 4 157020 15694 1019 15497 24025;24026;24027 31135;31136;31137;31138 31136 4 RQPDMVPLGHHK Unmodified 1413.7299 0.72993693 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 7 0 1 31.222 31.222 4 0.029465 6152 TMT1-6 47.189 32.217 30.636 44.022 43.557 28.181 48.914 91.346 29 44 44 29 51 87 1 1 1 1 1 1 1678.7 15695 772 15498 24028 31139 31139 1 RQPILDAIEAK Unmodified 1252.7139 0.71393574 1665 Q13043 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes yes 0 0 0 0 1 6 0 1 51.799 51.799 3 0.00071755 14791 TMT1-5 93.623 71.425 207.25 314.92 247.68 161.81 317 269.18 196 313 254 167 319 261 2 2 2 2 2 2 16011 15696 1665 15499 24029 31140;31141 31140 2 RQQEELLAEENQR Unmodified 1641.8071 0.80706086 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 2 0 1 34.462 34.462 3 0.0060894 8762 TMT1-1 64.842 56.134 38.113 50.968 43.432 20.791 35.418 37.365 36 51 44 22 36 36 1 1 1 1 1 1 6317.4 15697 1833 15500 24030 31142 31142 1 RQQEVETELK Unmodified 1258.6517 0.65172941 572 P08621-2;P08621;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 1 3 0 1 34.602 34.602 3 0.00038626 9170 TMT1-2 103.21 64.066 99.471 121.98 130.46 77.665 106.3 120.62 94 123 131 80 109 116 1 1 1 1 1 1 9368.2 15698 572 15501 24031 31143 31143 1 RQQQLTAMK Oxidation (M) 1118.5866 0.58662674 1019;1029 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 1 0 1 7.5 0.5 1 1 27.465 27.465 3 0.012336 4850 TMT1-7 64.711 35.238 93.562 85.042 72.835 85.821 87.742 101.96 88 87 76 84 91 98 2 2 2 2 2 2 7805.1 15699 1019;1029 15502 24032;24033 31144;31145 31145 193 2 RQQQLTAMK Unmodified 1102.5917 0.59171211 1019;1029 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH11 Myosin-9;Myosin-11 no no 0 0 0 0 1 8 0 1 32.507 32.507 3 0.00313 6765 TMT1-7 88.948 64.567 186.53 131.75 277.12 162.98 219.27 372.17 176 140 271 168 229 355 1 1 1 1 1 1 28032 15700 1019;1029 15502 24034 31146 31146 1 RQTSGGPVDASSEYQQELER Unmodified 2236.0356 0.035616823 784 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 0 1 2 0 1 40.625 40.625 3 1.091E-09 11221 TMT1-1 95.414 88.374 30.674 35.494 44.375 21.292 5.8005 15.824 29 36 44 22 7 15 1 1 1 1 1 1 7177.9 15701 784 15503 24035 31147 31147 1 RQVDQLTNDK Unmodified 1215.6208 0.62076364 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 4.5 0.5 1 1 34.839 34.839 3 1.0599E-06 8233 TMT1-3 155.47 113.14 606.57 992.85 727.17 584.26 569.77 750.2 574 983 754 584 595 719 3 3 3 3 3 3 87851 15702 575 15504 24036;24037 31148;31149;31150 31148 3 RQVPVEEAR Unmodified 1082.5833 0.58325592 650 P11234;P11234-2;P11234-3 RALB Ras-related protein Ral-B yes no 0 0 0 0 1 2 0 1 25.081 25.081 3 0.0044868 5094 TMT1-1 83 74.59 30.804 28.301 28.566 21.511 44.274 22.189 29 29 29 22 44 22 1 1 1 1 1 1 2846.4 15703 650 15505 24038 31151 31151 1 RSENEEFVEVGR Unmodified 1449.6848 0.68482046 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 1 2 0 1 36.156 36.156 3 1.5092E-14 9422 TMT1-1 178.15 136.83 115.34 144.01 149.07 138.45 185.95 156.73 109 145 152 138 189 152 1 1 1 1 1 1 36225 15704 635 15506 24039 31152 31152 1 RSPPIPLAK Unmodified 977.6022 0.60220045 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 9 0 1 41.432 41.432 3 0.010243 8592 TMT1-8 86.18 55.616 115.48 160.58 112.15 70.548 135.93 150.69 109 160 116 73 138 145 1 1 1 1 1 1 8256 15705 686 15507 24040 31153 31153 1 RSTITSR Unmodified 819.45626 0.45626449 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q6DRA6;Q6DN03;Q8N257;Q99880 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC;HIST3H2BB;HIST1H2BL Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 0 1 8 0 1 18.007 18.007 3 0.03072 3302 TMT1-7 68.787 35.271 3.198 1.8799 1.9445 2.0346 1.8906 3.1441 3 2 2 2 2 3 1 1 1 1 1 1 340.57 15706 239;524;2168;2498 15508 24041 31154 31154 1 RTDDIPVWDQEFLK Unmodified 1760.8733 0.87334951 1474 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 0 1 5 0 2 64.308 64.308 3;4 1.2728E-10 19591 TMT1-4 126.77 87.11 137.49 227.74 143.18 155.54 167.55 212.68 130 225 152 153 174 204 2 2 2 2 2 2 26786 15707 1474 15509 24042;24043 31155;31156 31155 2 RTDEAAFQK Unmodified 1064.5251 0.52507234 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 1 4.6 2.06 1 1 1 1 1 33.964 33.964 3 3.2697E-06 7592 TMT1-4 157.75 116.72 2832.9 4011 3417.2 2554.8 3735.8 3328 2678 4003 3499 2588 3793 3222 7 7 7 7 7 7 337180 15708 899 15510 24044;24045;24046;24047;24048 31157;31158;31159;31160;31161;31162;31163 31160 7 RTDLCDHALHISHDEL Unmodified 1930.8956 0.89555829 2964 Q9Y2B0 CNPY2 Protein canopy homolog 2 yes yes 0 0 0 0 1 3 0 1 41.247 41.247 4 1.7066E-05 11802 TMT1-2 85.619 62.482 30.566 58.938 42.654 28.358 42.383 68.081 29 58 44 29 44 65 1 1 1 1 1 1 5819.9 15709 2964 15511 24049 31164 31164 1 RTEEEEEDLPDAQTAAK Unmodified 1930.8756 0.87559393 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 1 2 0 1 39.5 39.5 3 4.1513E-10 10780 TMT1-1 114.06 106.17 23.378 29.051 13.705 14.912 35.395 45.894 22 29 15 15 36 44 1 1 1 1 1 1 5118.4 15710 188 15512 24050 31165 31165 1 RTEEGPTLSYGR Unmodified 1364.6684 0.66844211 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 1 3 0 1 32.818 32.818 3 2.3158E-13 8461 TMT1-2 144.2 115.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15711 1109 15513 24051 31166 31166 1 RTGAIVDVPVGEELLGR Unmodified 1779.9843 0.98429694 888 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 1 5 0 1 59.02 59.02 3 0.0040983 17566 TMT1-4 55.688 27.391 54.132 49.658 57.207 51.567 40.766 84.117 51 51 58 51 44 80 1 1 1 1 1 1 11607 15712 888 15514 24052 31167 31167 1 RTPDFHDK Unmodified 1014.4883 0.4882929 873 P24311 COX7B Cytochrome c oxidase subunit 7B, mitochondrial yes yes 0 0 0 0 1 5 0 1 29.805 29.805 4 0.045015 5978 TMT1-4 46.334 26.005 115.57 152.2 103.65 102.63 142.3 135.59 109 152 109 102 145 131 1 1 1 1 1 1 8575.1 15713 873 15515 24053 31168 31168 1 RTPDGTENGDFLALDLGGTNFR Unmodified 2365.1299 0.12985156 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 4 0 1 67.362 67.362 3 8.5075E-06 21095 TMT1-3 67.364 51.639 54.315 50.166 26.049 45.921 32.906 76.879 51 51 29 44 36 73 1 1 1 1 1 1 13435 15714 787 15516 24054 31169 31169 1 RTPITVVK Unmodified 912.57565 0.57565135 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 9 0 1 37.971 37.971 3 0.0048544 7366 TMT1-8 120.33 51.95 187.64 816.94 592.48 491.84 505.93 600.65 182 789 614 491 525 577 1 1 1 1 1 1 142760 + 15715 506 15517 24055 31170 31170 1 RTPMGIVLDALEQQEEGINR Unmodified 2268.1532 0.15322954 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 0 1 6 0 1 74.913 74.913 3 8.2628E-10 23980 TMT1-5 97.59 83.182 46.438 80.96 61.545 82.905 46.105 99.954 44 80 65 80 51 95 2 2 2 2 2 2 17941 15716 310 15518 24056 31171;31172 31172 2 RVAGSVTELIQAAEAMK Unmodified 1772.9455 0.94546859 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 8 0 1 72.612 72.612 3 0.0026218 22572 TMT1-7 60.528 39.277 123.1 89.128 154.76 83.873 106.02 120.63 116 94 152 87 109 116 1 1 1 1 1 1 17121 15717 3010 15519 24057 31173 31173 1 RVDALNDEIR Unmodified 1199.6258 0.62584901 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 1 3 0 1 38.101 38.101 3 3.6276E-05 10554 TMT1-2 93.162 53.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15718 2944 15520 24058 31174 31174 1 RVDHCPIK Unmodified 1023.5284 0.52838358 905 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 1 6 0 1 27.115 27.115 4 0.021269 5157 TMT1-5 59.8 38.054 53.579 110.72 98.468 111.86 74.624 114.06 51 109 102 109 80 109 1 1 1 1 1 1 3840.2 15719 905 15521 24059 31175 31175 1 RVDTVDPPYPR Unmodified 1313.6728 0.67279921 456 P04004 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes yes 0 0 0 0 1 4 0 1 37.935 37.935 3 0.0024105 9511 TMT1-3 81.625 73.714 122.05 305.3 148.34 131.19 167.36 251.06 116 297 160 131 174 240 2 2 2 2 2 2 17449 15720 456 15522 24060 31176;31177 31177 2 RVEEVYR Unmodified 949.49813 0.49812931 3013 Q9Y4F9-2;Q9Y4F9 FAM65B Protein FAM65B yes no 0 0 0 0 1 3 0 1 27.947 27.947 3 0.01599 6476 TMT1-2 81.296 25.62 30.658 59.192 27.057 13.815 51.444 36.908 29 58 29 15 51 36 1 1 1 1 1 1 6056.9 15721 3013 15523 24061 31178 31178 1 RVEIMEEESEQ Unmodified 1377.6082 0.60820962 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 1 2 0 1 43.414 43.414 2 0.0010634 12315 TMT1-1 70.363 43.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15722 1298 15524 24062 31179 31179 1 RVELLQDELALSEPR Unmodified 1766.9527 0.95266246 2059 Q6ZMI0-4;Q6ZMI0-3;Q6ZMI0-5;Q6ZMI0-2;Q6ZMI0 PPP1R21 Protein phosphatase 1 regulatory subunit 21 yes no 0 0 0 0 1 4 0 1 58.499 58.499 3 2.9301E-06 17624 TMT1-3 102.64 69.433 30.547 43.774 58.749 27.541 34.814 45.911 29 44 58 29 36 44 1 1 1 1 1 1 6288.2 15723 2059 15525 24063 31180 31180 1 RVELSGPK Unmodified 884.50797 0.50796571 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8 SEPT9 Septin-9 yes no 0 0 0 0 1 6 0 1 35.031 35.031 3 0.0073345 8211 TMT1-5 51.113 11.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15724 2864 15526 24064 31181 31181 1 RVESQLK Unmodified 858.49232 0.49231565 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 1 6 0 1 30.372 30.372 3 0.0043153 6339 TMT1-5 102.46 22.655 170.04 179.04 124.21 133.14 140.38 150.56 160 181 131 131 145 145 1 1 1 1 1 1 21503 15725 396 15527 24065 31182 31182 1 RVEVVEEDGPSEK Unmodified 1471.7155 0.71545188 136 O15231-2;O15231-5;O15231-4;O15231-7;O15231;O15231-3;O15231-8;O15231-6 ZNF185 Zinc finger protein 185 yes no 0 0 0 0 1 2 0 1 38.42 38.42 3 0.00032061 10343 TMT1-1 66.246 53.479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15726 136 15528 24066 31183 31183 1 RVFQEFLK Unmodified 1065.5971 0.59711507 3079 yes no 0 0 0 0 1 8.5 0.5 1 1 51.978 51.978 3 0.0048887 12530 TMT1-8 119.21 0 347.14 453.47 242.45 246.77 407.31 510.72 327 452 261 246 417 490 2 2 2 2 2 2 25748 + 15727 3079 15529 24067;24068 31184;31185 31185 2 RVGFQYEGTYK Unmodified 1346.6619 0.66190017 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 1 7 0 1 43.334 43.334 3 0.00071755 10882 TMT1-6 93.623 55.385 209.43 288.96 263.93 196.06 245.7 350.1 198 289 269 198 255 335 1 1 1 1 1 1 16823 15728 655 15530 24069 31186 31186 1 RVIISAPSADAPMFVMGVNHEK Unmodified 2368.2032 0.20315662 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 1 8 0 1 58.077 58.077 5 3.3479E-06 16766 TMT1-7 66.888 57.358 68.727 141.34 51.331 58.334 106.39 144.07 65 138 58 58 109 138 1 1 1 1 1 1 17459 15729 472 15531 24070 31187 31187 1 RVLDSEGQLR Unmodified 1171.6309 0.63093439 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 1 4 0 1 33.828 33.828 3 0.018773 7870 TMT1-3 62.705 35.116 130.34 159.11 139.8 154.61 170.02 142.26 123 160 145 152 174 138 1 1 1 1 1 1 3797.2 15730 3051 15532 24071 31188 31188 1 RVPCAYDK Unmodified 1007.4859 0.48585006 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 1 6 0 1 33.576 33.576 3 0.037518 7623 TMT1-5 60.518 40.732 275.56 326.48 298.55 235.33 314.59 332.14 260 329 305 237 322 320 1 1 1 1 1 1 23210 15731 1127 15533 24072 31189 31189 1 RVPIPVDR Unmodified 950.56615 0.56614929 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 1 6.5 0.5 1 1 36.403 36.403 3 0.0023281 8273 TMT1-6 66.299 29.598 46.104 111.33 91.94 64.1 77.883 83.058 44 109 94 65 80 80 1 1 1 1 1 1 6099.1 15732 1112 15534 24073;24074 31190;31191 31191 2 RVTIMPK Unmodified 843.50004 0.50004356 1496;1525;2067 P68431;Q16695;Q6NXT2;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3C;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3C;Histone H3.3;Histone H3.2 no no 0 0 0 0 1 1 0 1 39.426 39.426 3 0.020553 9186 TMT 1-phospho 76.774 17.992 111.93 183.63 147.52 120.44 160.45 253.39 106 182 152 121 167 242 1 1 1 1 1 1 22767 15733 1496;1525;2067 15535 24075 31192 31192 1 RVTIMPK Oxidation (M) 859.49496 0.49495818 1496;1525;2067 P68431;Q16695;Q6NXT2;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3C;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3C;Histone H3.3;Histone H3.2 no no 0 0 1 0 1 9 0 1 37.313 37.313 3 0.03311 6976 TMT1-8 51.43 9.5381 377.65 439.93 356.34 328.2 423.69 472.94 356 443 369 327 435 455 2 2 2 2 2 2 11154 15734 1496;1525;2067 15535 24076 31193;31194 31193 241 2 RVYGSFLVNPESGYNVSLLYDLENLPASK Unmodified 3243.6452 0.64519406 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 8 0 1 82.526 82.526 4 1.6168E-13 26370 TMT1-7 89.684 80.618 38.4 20.467 21.043 30.076 19.49 62.338 36 22 22 29 22 59 1 1 1 1 1 1 7751.8 15735 129 15536 24077 31195 31195 1 RWDDSQK Unmodified 933.43044 0.43044367 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 1 5.5 0.5 1 1 32.075 32.075 3 0.002353 7079 TMT1-5 72.789 26.631 99.654 122.49 99.291 72.311 82.966 137.28 94 123 102 73 87 131 1 1 1 1 1 1 6722.5 15736 1891 15537 24078;24079 31196;31197 31197 2 RYDDPEVQK Unmodified 1148.5462 0.54620171 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 1 3.33 0.471 2 1 34.455 34.455 3;4 0.00027455 9136 TMT1-2 127.51 110.9 567.18 648.72 786.53 496.93 724.04 760.72 536 658 786 510 739 733 4 4 4 4 4 4 61850 15737 1058 15538 24080;24081;24082 31198;31199;31200;31201 31199 4 RYEEIVK Unmodified 935.50763 0.50763136 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 4.5 0.5 1 1 37.298 37.298 2;3 0.020845 8951 TMT1-4 102 64.981 191.69 388.94 273.99 250.48 284.3 310.62 182 382 286 249 293 299 2 2 2 2 2 2 16798 15738 1490 15539 24083;24084 31202;31203 31203 2 RYIETDPANR Unmodified 1233.6102 0.61019895 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 3 0 1 30.648 30.648 3 0.002053 7631 TMT1-2 89.266 62.752 99.57 122.26 113.53 93.138 150.87 111.89 94 123 116 94 152 109 1 1 1 1 1 1 26903 + 15739 506 15540 24085 31204 31204 1 RYNEDLELEDAIHTAILTLK Unmodified 2356.2274 0.22744034 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 1 6 0 1 77.404 77.404 4 0.00020604 24942 TMT1-5 62.002 38.902 30.654 51.627 34.073 36.527 42.008 68.091 29 51 36 36 44 65 1 1 1 1 1 1 6331.2 15740 891 15541 24086 31205 31205 1 RYPNVFGIGDCTNLPTSK Unmodified 2037.9942 0.9942097 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 1 8 0 1 58.912 58.912 3 3.7813E-10 17121 TMT1-7 110.26 101.44 46.37 104.52 52.883 75.616 54.319 83.73 44 102 58 73 58 80 1 1 1 1 1 1 17065 15741 3063 15542 24087 31206 31206 1 RYPTAEEILVLGGYLR Unmodified 1849.0098 0.0097834104 2022 Q6NYC8;Q6NYC8-4;Q6NYC8-3 PPP1R18 Phostensin yes no 0 0 0 0 1 8 0 1 70.67 70.67 3 0.00059627 21734 TMT1-7 73.345 43.538 38.006 65.783 48.736 51.791 55.671 76.229 36 65 51 51 58 73 1 1 1 1 1 1 11733 15742 2022 15543 24088 31207 31207 1 RYTLNILEEIGGGQK Unmodified 1689.905 0.90498399 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 1 7 0 1 64.051 64.051 3 3.3123E-06 19060 TMT1-6 102.39 57.95 167.97 324.21 168.47 182.96 256.91 223.99 159 318 182 181 261 217 2 2 2 2 2 2 49204 15743 690 15544 24089 31208;31209 31208 2 SAAAIALPPIAK Unmodified 1121.6808 0.6808447 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 61.08 61.08 2 1.4951E-16 17974 TMT1-7 150.85 133.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15744 1229 15545 24090 31210 31210 1 SAADEVDGLGVAR Acetyl (N-term) 1300.6259 0.62590859 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 1 0 0 0 0 2 0 1 54.783 54.783 2 0.0047572 16827 TMT1-1 60.547 35.422 31.876 28.223 28.913 13.704 51.449 36.908 30 29 29 15 51 36 1 1 1 1 1 1 6842.4 15745 1139 15546 24091 31211 31211 1 SAADEVDGLGVARPHYGSVLDNER Acetyl (Protein N-term) 2568.2205 0.22045748 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 1 0 0 1 2 0 1 54.391 54.391 3 2.1556E-29 16630 TMT1-1 100.19 83.113 15.771 29.297 29.641 22.033 13.08 46.531 15 29 30 22 15 44 1 1 1 1 1 1 8828.8 15746 1139 15547 24092 31212 31212 1 SAAEMVLSDDNFASIVAAVEEGR Unmodified 2380.1217 0.12165464 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5 0 2 89.614 89.614 3;4 3.693E-13 29476 TMT1-4 99.441 92.725 74.075 129.2 119.2 80.692 94.333 99.644 70 128 121 81 97 96 5 7 7 6 7 7 11609 15747 2344 15548 24093;24094 31213;31214;31215;31216;31217;31218;31219 31217 7 SAAEMYGSSFDLDYDFQR Unmodified 2100.8735 0.87348544 547 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 0 4 0 1 69.089 69.089 3 4.2146E-10 21738 TMT1-3 104.88 100.53 53.849 80.17 78.91 57.663 54.631 98.645 51 80 80 58 58 94 2 2 2 2 2 2 16365 15748 547 15549 24095 31220;31221 31220 2 SAAETVTK Unmodified 805.41815 0.41814765 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 33.021 33.021 2 0.0017172 7519 TMT1-3 140.5 58.049 629.99 630.79 523.4 567.11 790.71 553.08 593 641 545 561 799 540 3 3 3 3 3 3 83727 15749 1395 15550 24096;24097 31222;31223;31224 31222 3 SAAQAAAQTNSNAAGK Unmodified 1459.7015 0.70153315 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 0 5.5 0.5 1 1 32.059 32.059 3 1.6137E-11 7042 TMT1-5 119.46 79.798 132.04 113.28 74.074 112.76 104.14 136.67 124 116 80 109 109 131 2 2 2 2 2 2 20341 15750 2207 15551 24098;24099 31225;31226 31226 2 SAASYALGSISVGNLPEYLPFVLQEITSQPK Unmodified 3278.7075 0.70745996 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 9 0 2 102.34 102.34 4;5 4.0779E-06 31942 TMT1-8 48.088 39.692 45.385 42.235 90.964 33.43 26.408 69.602 43 44 88 36 29 66 2 2 2 2 2 2 15640 15751 2116 15552 24100;24101 31227;31228 31228 2 SAATWDER Unmodified 934.41446 0.41445926 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 34.498 34.498 2 0.006305 9171 TMT1-2 107.01 39.027 116.05 99.576 67.405 112.73 127.18 136.02 109 102 73 109 131 131 1 1 1 1 1 1 14375 15752 1546 15553 24102 31229 31229 1 SACDTVDTWLDDTAK Unmodified 1696.725 0.72503029 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 65.688 65.688 3 0.01055 20358 TMT1-3 52.008 42.725 84.709 108.63 98.042 96.437 82.647 144.75 80 109 101 95 88 138 2 2 2 2 2 2 5576.9 15753 1763 15554 24103 31230;31231 31230 2 SACKEDIPSEK Unmodified 1262.5813 0.58126659 1831 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 1 5 0 1 36.884 36.884 3 0.0065566 8820 TMT1-4 72.705 34.751 160.69 275.71 171 168.06 227.38 281.33 152 272 181 167 234 270 1 1 1 1 1 1 12718 15754 1831 15555 24104 31232 31232 1 SADAAAGAPLPR Acetyl (Protein N-term) 1137.5778 0.57783619 104 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 1 0 0 0 2 0 1 44.465 44.465 2 1.9939E-44 12741 TMT1-1 117.89 90.636 15.761 21.715 37.71 21.133 35.402 37.366 15 22 37 22 36 36 1 1 1 1 1 1 28117 15755 104 15556 24105 31233 31233 1 SADESGQALLAAGHYASDEVR Unmodified 2145.9927 0.99268938 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 52.657 52.657 3 8.8005E-40 16293 TMT1-2 167.51 158.45 46.792 43.091 34.114 45.267 42.119 53.164 44 44 36 44 44 51 1 1 1 1 1 1 18934 15756 1737 15557 24106 31234 31234 1 SADEVLFTGVK Unmodified 1164.6027 0.60265396 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 5 0 1 59.562 59.562 3 0.00039213 17741 TMT1-4 67.385 47.726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15757 3038 15558 24107 31235 31235 1 SADFTNFDPR Unmodified 1168.5149 0.51490158 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 51.28 51.28 2 0.00020258 14482 TMT1-4 129.1 109.83 385.57 683.76 441.45 541.52 551.03 500.22 365 674 470 529 567 484 2 2 2 2 2 2 138630 15758 406 15559 24108;24109 31236;31237 31237 2 SADFVVEAIGDDVGTLGFSVEGPSQAK Unmodified 2694.3025 0.30245578 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.91 1.38 1 1 5 4 91.734 91.734 3;4;5 9.8892E-23 29456 TMT1-4 113.6 99.295 1788.1 1935.9 1988.8 1720.8 1806.5 2215.8 1686 1961 2015 1711 1870 2127 38 39 35 39 37 41 129590 15759 831 15560 24110;24111;24112;24113;24114;24115;24116;24117;24118;24119;24120 31238;31239;31240;31241;31242;31243;31244;31245;31246;31247;31248;31249;31250;31251;31252;31253;31254;31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267;31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278;31279 31250 42 SADGSPALK Unmodified 844.42905 0.42904669 1160 P48637 GSS Glutathione synthetase yes yes 0 0 0 0 0 5 0 1 36.684 36.684 2 0.014833 8718 TMT1-4 82.287 66.625 107.9 137.15 144.03 91.752 127.88 143.46 102 138 145 94 131 138 1 1 1 1 1 1 10844 15760 1160 15561 24121 31280 31280 1 SADGVIVSGVK Unmodified 1030.5659 0.56587452 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 6 0 1 47.616 47.616 3 0.00040794 13200 TMT1-5 94.616 58.091 84.181 169.76 134.98 83.644 180.87 134.48 80 167 138 87 181 131 1 1 1 1 1 1 7313.2 15761 2928 15562 24122 31281 31281 1 SADLPHSFK Unmodified 1000.4978 0.49779495 2438 Q96M96 FGD4 FYVE, RhoGEF and PH domain-containing protein 4 yes yes 0 0 0 0 0 6 0 1 41.908 41.908 3 0.0021797 10940 TMT1-5 58.246 44.252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15762 2438 15563 24123 31282 31282 1 SADTLWDIQK Unmodified 1175.5823 0.58225287 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 5.5 0.5 1 1 60.819 60.819 2;3 7.35E-21 18343 TMT1-5 200.88 166.49 1223.3 1545.9 1373.3 1125.9 1512.3 1759.5 1155 1552 1407 1131 1553 1691 3 3 3 3 3 3 358470 15763 527 15564 24124;24125 31283;31284;31285 31284 3 SADTLWGIQK Unmodified 1117.5768 0.57677356 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 5.75 2.77 1 2 1 58.91 58.91 2;3 4.6801E-14 17089 TMT1-6 182.98 132.95 864.99 1304.4 1033.3 792.54 1019.9 1343.9 818 1297 1064 799 1054 1288 4 4 4 4 4 4 365510 15764 385 15565 24126;24127;24128;24129 31286;31287;31288;31289;31290 31289 5 SADTQSISR Unmodified 963.46214 0.46213773 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 26.404 26.404 2 0.0023782 5794 TMT1-2 76.345 31.925 26.274 54.916 45.986 32.33 53.074 56.05 25 54 47 33 54 54 1 1 1 1 1 1 6622.6 15765 1112 15566 24130;24131 31291;31292 31292 2 SADVEPVSASAAHILGEVCR Unmodified 2067.0055 0.0055026685 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 1 59.213 59.213 3 1.5965E-39 17571 TMT1-4 171.33 157.91 54.07 41.928 74.294 42.727 49.821 45.482 51 44 73 44 51 44 1 1 1 1 1 1 20754 15766 1786 15567 24132 31293 31293 1 SAEAAAAQAEEDLR Unmodified 1430.6638 0.66375066 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 2 0 1 49.349 49.349 3 8.2579E-15 14692 TMT1-1 135.91 111.49 115.68 161.13 78.514 120.53 84.077 128.72 109 160 87 116 87 123 2 2 2 2 1 2 23541 15767 2779 15568 24133 31294;31295 31295 2 SAEAAAEATK Unmodified 947.45599 0.45598972 1928 Q3LXA3 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes yes 0 0 0 0 0 2 0 1 34.556 34.556 2 0.00038546 8792 TMT1-1 120.09 68.236 61.723 41.812 50.395 44.157 49.499 52.954 58 44 51 44 51 51 1 1 1 1 1 1 7062.1 15768 1928 15569 24134 31296 31296 1 SAEAELQSK Unmodified 961.47164 0.47163978 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3 0.816 1 1 1 38.287 38.287 2;3 0.0037646 9557 TMT1-3 78.264 35.181 268.82 378.98 304.35 205.17 330.54 456.41 254 378 312 210 340 437 3 3 3 3 3 3 19930 15769 1833 15570 24135;24136;24137 31297;31298;31299 31299 3 SAEAFGK Unmodified 708.34425 0.34425443 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 6 0 1 39.481 39.481 2 0.013448 9943 TMT1-5 102.71 50.03 160.99 231.22 158.13 176.87 206.73 261.67 152 230 167 174 214 251 1 1 1 1 1 1 17822 15770 1688 15571 24138 31300 31300 1 SAEDYNSSNALNVK Unmodified 1510.69 0.68996541 1676 Q13153;Q13153-2 PAK1 Serine/threonine-protein kinase PAK 1 yes no 0 0 0 0 0 4 0 1 45.87 45.87 3 0.0036625 12657 TMT1-3 62.68 49.48 38.082 58.437 42.317 35.755 56.958 60.203 36 58 44 36 58 58 1 1 1 1 1 1 5535.5 15771 1676 15572 24139 31301 31301 1 SAEEAPLYSK Unmodified 1093.5292 0.52915466 2500 Q99952-2;Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 yes no 0 0 0 0 0 4 0 1 43.962 43.962 3 0.00023642 11898 TMT1-3 103.26 80.376 107.97 161.1 111.46 86.354 111.36 174.84 102 160 116 87 116 167 1 1 1 1 1 1 13262 15772 2500 15573 24140 31302 31302 1 SAEEEAADLPTKPTK Unmodified 1585.7835 0.78353145 2275 Q8WW12-2;Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein yes no 0 0 0 0 1 4 0 1 44.511 44.511 4 7.652E-06 12108 TMT1-3 97.797 79.88 107.51 239.69 122 108.09 200.58 197.88 102 234 131 109 203 191 1 1 1 1 1 1 10569 15773 2275 15574 24141 31303 31303 1 SAEETFQLSR Unmodified 1166.5568 0.5567664 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 4 0 1 44.35 44.35 2 0.034408 12067 TMT1-3 68.49 53.973 91.65 169.13 142.52 84.332 120.4 127.68 87 167 145 87 123 123 1 1 1 1 1 1 15674 15774 48 15575 24142 31304 31304 1 SAELAAALLSIYMER Unmodified 1636.8494 0.84944294 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 1 88.221 88.221 3 9.3711E-08 26809 TMT1-8 104.41 73.977 46.77 35.475 44.242 22.498 27.958 69.558 44 37 44 22 30 66 2 2 2 1 2 2 13475 15775 2525 15576 24143 31305;31306 31306 2 SAEVETSEGVDESEKK Acetyl (Protein N-term) 1764.7901 0.79013297 961 P30519 HMOX2 Heme oxygenase 2 yes yes 0 1 0 0 1 2 0 1 43.534 43.534 3 3.5072E-08 12362 TMT1-1 52.453 43.803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15776 961 15577 24144 31307 31307 1 SAFEETGK Unmodified 867.39741 0.39741221 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 0 4 0 1 39.235 39.235 2 0.015601 9986 TMT1-3 92.439 49.316 208.03 286.88 139.32 154.4 182.67 261.29 196 285 152 152 190 250 1 1 1 1 1 1 24250 15777 2528 15578 24145 31308 31308 1 SAFLCGVMK Unmodified 1011.4882 0.48815825 226;227;170 O43390;O43390-3;O43390-2;O60506-2;O60506;O60506-3;O60506-4 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 9 0 1 59.371 59.371 2 0.00020807 15448 TMT1-8 141.39 87.917 77.023 155.06 88.12 87.455 126.76 181.87 73 152 94 87 131 174 1 1 1 1 1 1 15484 15778 170;226;227 15579 24146 31309 31309 1 SAFLQAFLGR Unmodified 1108.6029 0.60292873 2145 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 0 0 9 0 1 73.269 73.269 2 0.01115 20943 TMT1-8 78.816 34.369 54.392 42.826 19.3 37.276 49.009 76.42 51 44 22 36 51 73 1 1 1 1 1 1 6037.7 15779 2145 15580 24147 31310 31310 1 SAFPCFDEPAFK Unmodified 1414.6227 0.62273747 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 0 6 0 1 66.199 66.199 3 0.0046883 20536 TMT1-5 48.568 26.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15780 2882 15581 24148 31311 31311 1 SAFPFSDK Unmodified 897.42323 0.42323303 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 7 0 1 54.826 54.826 2 0.004794 15473 TMT1-6 122.52 69.58 229.76 360.98 392.85 263.06 400.96 521.56 218 360 395 269 412 500 2 2 2 2 2 2 36775 15781 1789 15582 24149 31312;31313 31313 2 SAFPHLQDAQVK Unmodified 1339.6884 0.68844927 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 1 46.348 46.348 3 0.00034993 12068 TMT1-6 88.338 66.106 68.718 102.46 85.785 41.653 70.523 114.18 65 102 87 44 73 109 1 1 1 1 1 1 4697.3 15782 121 15583 24150 31314 31314 1 SAFSEEVNIK Unmodified 1122.5557 0.55570376 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 5 0 1 51.931 51.931 2 0.00062735 14721 TMT1-4 111.61 80.234 92.13 115.42 107.35 71.83 82.988 137.28 87 116 109 73 87 131 1 1 1 1 1 1 18191 15783 1767 15584 24151 31315 31315 1 SAGACTAAAFLK Unmodified 1166.5754 0.57539335 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 8 0 2 53.306 53.306 2 1.2404E-10 14885 TMT1-7 164.64 145.37 108.48 99.924 77.134 64.743 90.643 137.06 102 102 80 65 94 131 1 1 1 1 1 1 13932 15784 932 15585 24152;24153 31316;31317 31316 2 SAGFHPSGSVLAVGTVTGR Unmodified 1798.9326 0.93259572 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 8 0 1 48.467 48.467 3 0.0010159 13011 TMT1-7 53.741 41.825 38.084 58.443 41.92 44.663 49.476 52.954 36 58 44 44 51 51 1 1 1 1 1 1 9351.1 15785 374 15586 24154 31318 31318 1 SAGGDFGNPLRK Acetyl (N-term) 1259.6258 0.62584901 2733 Q9NRW1 RAB6B Ras-related protein Rab-6B no no 1 0 0 0 1 5 0 1 48.718 48.718 2 9.6465E-05 13500 TMT1-4 46.001 27.562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15786 2733 15587 24155 31319 31319 1 SAGHHLIPVK Unmodified 1057.6033 0.60326308 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 8 0 1 33.224 33.224 3 0.012756 7029 TMT1-7 61.65 41.554 37.973 74.323 47.162 75.641 71.086 52.338 36 73 51 73 73 51 1 1 1 1 1 1 3828.1 15787 2717 15588 24156 31320 31320 1 SAGKYDVYLINPQGK Unmodified 1651.857 0.85697116 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 1 8 0 2 54.485 54.485 3;4 0.0026961 15430 TMT1-7 65.704 38.975 169.78 217.18 135.03 179.01 166.2 251.1 160 217 145 174 175 240 2 2 2 2 2 2 23034 15788 1247 15589 24157;24158 31321;31322 31322 2 SAGLAFSLYQAMAK Unmodified 1456.7384 0.73843593 1223 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 0 9 0 1 74.394 74.394 3 0.023603 21367 TMT1-8 43.03 17.371 53.985 80.548 55.716 43.431 71.248 90.709 51 80 58 44 73 87 1 1 1 1 1 1 4327.7 15789 1223 15590 24159 31323 31323 1 SAGLFQNPK Unmodified 960.50288 0.50288033 98 O14618 CCS Copper chaperone for superoxide dismutase yes yes 0 0 0 0 0 8 0 2 47.146 47.146 2;3 0.013046 12414 TMT1-7 84.743 24.154 160.5 255.76 219.91 165.69 198.5 211.8 152 254 225 167 204 204 2 2 2 2 2 2 51883 15790 98 15591 24160;24161 31324;31325 31324 2 SAGLPSHSSVISQHSK Unmodified 1620.822 0.82198264 1514 P82909 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 0 0 0 0 0 9 0 1 33.047 33.047 4 3.0376E-06 5810 TMT1-8 83.292 52.809 23.285 36.346 23.223 34.314 19.734 49.539 22 36 25 33 22 47 1 1 1 1 1 1 1937.6 15791 1514 15592 24162 31326 31326 1 SAGQGEVLVYVEDPAGHQEEAK Unmodified 2312.0921 0.092069069 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.1 0.831 2 6 1 1 53.272 53.272 3;4;5 1.1985E-95 16499 TMT1-2 233.3 204.27 2149.2 2856.3 2818.4 2059.9 2423.3 2858.1 2032 2865 2858 2080 2501 2746 13 13 13 13 13 13 1498900 15792 831 15593 24163;24164;24165;24166;24167;24168;24169;24170;24171;24172 31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341 31332 15 SAGSIPGER Unmodified 872.43519 0.4351947 1581 Q04206-2;Q04206-3;Q04206-4;Q04206 RELA Transcription factor p65 yes no 0 0 0 0 0 3 0 1 30.562 30.562 2 0.029365 7612 TMT1-2 74.269 47.015 46.654 81.562 24.629 36.376 79.964 59.546 44 80 29 36 80 58 1 1 1 1 1 1 6870.9 15793 1581 15594 24173 31342 31342 1 SAGTVELDDQIQANLPDEQVLSEEEIDENFK Unmodified 3474.6162 0.61619793 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 3 0 1 78.252 78.252 4 3.4052E-06 26276 TMT1-2 59.228 49.765 15.958 0 23.059 14.911 5.8374 23.285 15 0 22 15 7 22 1 0 1 1 1 1 3332.7 15794 536 15595 24174 31343 31343 1 SAGWNIPIGLLYCDLPEPR Unmodified 2170.0881 0.088110086 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 8 0 1 85.436 85.436 3 3.2364E-13 27374 TMT1-7 108.18 95.117 46.609 72.803 39.615 76.101 70.552 67.277 44 72 44 73 73 65 2 2 2 2 2 2 21841 15795 451 15596 24175 31344;31345 31344 2 SAHAGTYEVR Unmodified 1089.5203 0.52032131 1243 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 0 4.5 1.5 1 1 24.036 24.036 3 6.2466E-10 5001 TMT1-2 168.46 138.69 146.21 196.23 146.87 138.46 192.49 149.08 138 196 153 138 195 145 3 3 3 3 3 3 24603 15796 1243 15597 24176;24177 31346;31347;31348;31349 31347 4 SAIPAEESDQLLIRPLGAGQEVGR Acetyl (Protein N-term) 2547.3293 0.32927965 2893 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 1 0 0 1 3 0 1 68.603 68.603 3 7.0557E-07 22564 TMT1-2 59.324 36.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15797 2893 15598 24178 31350 31350 1 SAIQAAWPSGTECIAK Acetyl (N-term) 1730.8298 0.82977013 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 1 0 0 0 0 5 0 1 69.23 69.23 3 0.00019712 21487 TMT1-4 69.594 40.266 123.04 144.01 117.93 132.29 147.2 166.36 116 145 123 130 152 160 2 2 2 2 2 2 28826 15798 1083 15599 24179 31351;31352 31351 2 SAIYGFGDQSNLR Unmodified 1426.6841 0.68409218 2206 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 0 6 0 1 52.341 52.341 3 6.4738E-06 15072 TMT1-5 85.457 51.582 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15799 2206 15600 24180 31353 31353 1 SALALAIK Unmodified 785.50109 0.50108942 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 9 0 1 56.351 56.351 2 0.0058575 14294 TMT1-8 125.25 56.831 338.86 411.9 407.67 286.77 429.98 436.52 320 415 413 292 438 421 2 2 2 2 2 2 27039 15800 893 15601 24181 31354;31355 31355 2 SALALVTGAGSGIGR Unmodified 1328.7412 0.74121312 2293 Q92506 HSD17B8 Estradiol 17-beta-dehydrogenase 8 yes yes 0 0 0 0 0 9 0 1 60.211 60.211 2 0.0010819 15809 TMT1-8 67.997 18.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15801 2293 15602 24182 31356 31356 1 SALASVIMGLSPILGK Oxidation (M) 1571.8957 0.89566486 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 0 9 0 1 86.885 86.885 3 0.00043422 26235 TMT1-8 64.675 35.376 15.677 60.335 19.108 22.38 28.015 37.577 15 58 22 22 29 36 1 1 1 1 1 1 2686.5 15802 956 15603 24183 31357 31357 176 1 SALASVIMGLSPILGK Unmodified 1555.9008 0.90075023 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 9 0 1 91.1 91.1 3 3.4805E-20 27906 TMT1-8 143.46 121.23 76.777 123.08 156.55 76.157 103.84 133.48 73 123 155 80 107 128 2 2 2 2 2 2 22723 15803 956 15603 24184 31358;31359 31359 2 SALEAESESLDSFTADSDSTSR Unmodified 2303.9877 0.98772316 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 2 0 1 61.478 61.478 3 1.0342E-28 19432 TMT1-1 129.77 120.95 30.729 35.646 35.027 36.623 33.884 60.861 29 36 36 36 36 58 1 1 1 1 1 1 22851 15804 2378 15604 24185 31360 31360 1 SALKDTYMLSSTVSSK Unmodified 1716.8604 0.86040156 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 1 8 0 1 55.533 55.533 3 3.113E-10 15794 TMT1-7 95.9 65.927 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15805 2407 15605 24186 31361 31361 1 SALLALGLK Unmodified 884.5695 0.56950333 1651 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 0 9 0 1 66.71 66.71 2 0.00034531 18378 TMT1-8 119.29 63.574 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15806 1651 15606 24187 31362 31362 1 SALLIGK Unmodified 700.44833 0.44832557 2323 Q92854 SEMA4D Semaphorin-4D yes yes 0 0 0 0 0 9 0 1 51.947 51.947 2 0.016123 12568 TMT1-8 97.071 10.985 107.69 175.41 147.19 139.43 140.09 150.57 102 174 152 138 145 145 1 1 1 1 1 1 7509.4 15807 2323 15607 24188 31363 31363 1 SALQVEQK Unmodified 901.4869 0.48689592 156 O43150-2;O43150 ASAP2 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 5 0 1 39.472 39.472 2 0.0071328 9834 TMT1-4 103.55 26.489 108.22 106.76 115.03 79.162 75.615 128.96 102 109 116 80 80 123 1 1 1 1 1 1 10466 15808 156 15608 24189 31364 31364 1 SALSGHLETVILGLLK Unmodified 1649.9716 0.97160699 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 9 0 1 81.856 81.856 3 6.9342E-21 24339 TMT1-8 146.96 116.75 268.36 530.96 252.91 280.8 308.08 369.64 254 520 276 276 319 355 2 2 2 2 2 2 65479 15809 534 15609 24190 31365;31366 31366 2 SALTIQLIQNHFVDEYDPTIEDSYR Unmodified 2966.4298 0.42978155 412 P01111;P01116-2;P01116;P01112-2;P01112 NRAS;KRAS;HRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed yes no 0 0 0 0 0 6 0 1 74.229 74.229 4 0.00078008 23643 TMT1-5 47.507 41.003 54.46 19.269 27.908 45.779 34.525 29.929 51 22 29 44 36 29 1 1 1 1 1 1 5808.5 15810 412 15610 24191 31367 31367 1 SALTLQFMYDEFVEDYEPTK Unmodified 2425.1035 0.10354496 650;649 P11234;P11234-2;P11233 RALB;RALA Ras-related protein Ral-B;Ras-related protein Ral-A no no 0 0 0 0 0 5.5 0.5 1 1 90.868 90.868 4 0.00031522 29918 TMT1-4 58.073 54.785 69.979 71.611 80.267 36.889 43.792 46.102 66 73 80 37 45 44 3 3 3 2 3 2 4827 15811 650;649 15611 24192;24193 31368;31369;31370 31368 3 SALTLVMGPLDNPNPILR Unmodified 1920.0503 0.050268017 2827 Q9P2D3-3;Q9P2D3 HEATR5B HEAT repeat-containing protein 5B yes no 0 0 0 0 0 9 0 1 80.488 80.488 3 0.013034 23651 TMT1-8 43.208 23.814 30.632 44.011 44.218 13.358 21.358 30.305 29 44 44 15 22 29 1 1 1 1 1 1 12008 15812 2827 15612 24194 31371 31371 1 SALTVQFVQGIFVEK Unmodified 1664.9138 0.91375776 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 0 8.33 2.21 1 11 90.616 90.616 2;3 1.0235E-43 23278 TMT1-8 198.57 155.97 2052.7 2510.2 2208.1 1858.8 2280.3 2628.7 1937 2524 2266 1859 2348 2527 15 16 16 15 16 16 715940 15813 1384;1447 15613 24195;24196;24197;24198;24199;24200;24201;24202;24203;24204;24205;24206 31372;31373;31374;31375;31376;31377;31378;31379;31380;31381;31382;31383;31384;31385;31386;31387;31388;31389;31390;31391;31392 31380 21 SALTVQFVQGIFVEKYDPTIEDSYR Unmodified 2904.4545 0.45453974 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 1 8 0 1 81.231 81.231 4 2.0897E-07 25842 TMT1-7 71.143 69.164 61.436 56.123 86.496 88.921 53.964 76.278 58 58 87 87 58 73 1 1 1 1 1 1 16893 15814 1384;1447 15614 24207 31393 31393 1 SALTVQFVTGSFIEK Unmodified 1625.8665 0.86647322 1385 P61225 RAP2B Ras-related protein Rap-2b yes yes 0 0 0 0 0 9 0 2 74.386 74.386 3;4 2.0233E-11 21372 TMT1-8 118.52 95.147 253.7 280.25 224.53 188.5 249.57 247.65 239 283 232 189 255 239 3 3 3 3 3 3 35330 15815 1385 15615 24208;24209 31394;31395;31396 31394 3 SALVQIYELEEHKIETWR Unmodified 2243.1586 0.15863249 1299 P54619-2;P54619;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 1 6 0 1 72.014 72.014 4 0.00019444 22800 TMT1-5 70.235 55.775 23.068 36.823 59.218 27.217 50.534 45.462 22 37 58 29 51 44 1 1 1 1 1 1 4117.9 15816 1299 15616 24210 31397 31397 1 SALYYVDLIGGK Unmodified 1297.6918 0.69180331 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 8 0 1 73.123 73.123 3 0.00082189 22664 TMT1-7 78.903 47.675 84.426 139.14 119.78 101.82 134.46 151.8 80 138 123 102 138 146 2 2 2 2 2 2 25742 15817 692 15617 24211 31398;31399 31398 2 SAMMYIQELR Unmodified 1240.5944 0.59441423 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 61.574 61.574 2 0.007715 18097 TMT1-6 57.293 43.175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15818 228 15618 24212 31400 31400 1 SAMPFTASPASSTTAR Unmodified 1581.7457 0.74570615 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 46.584 46.584 3 9.8117E-12 12228 TMT1-7 123.42 102.02 161.54 201.64 270.47 172.33 150.29 266.48 153 204 269 175 160 254 2 2 2 2 2 2 35647 15819 41 15619 24213;24214 31401;31402 31402 2 SANLVAATLGAILNR Unmodified 1482.8518 0.85182621 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 9 0 1 84.863 84.863 3 8.4646E-12 25503 TMT1-8 120.92 89.283 38.064 34.643 65.442 58.758 39.132 91.625 36 36 65 58 43 87 2 2 2 2 2 2 24186 15820 787 15620 24215 31403;31404 31404 2 SANLVNPK Unmodified 841.46577 0.46576654 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 7 0 1 40.048 40.048 2 2.0785E-05 9565 TMT1-6 164.53 97.498 201 172.33 337.06 145.52 202.31 371.59 190 180 328 155 212 354 1 1 1 1 1 1 30732 15821 2662 15621 24216 31405 31405 1 SANTQVVR Unmodified 873.46683 0.46682918 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 4 0 1 25.291 25.291 2 0.029299 4553 TMT1-3 82.287 37.52 54.21 42.318 50.403 44.157 49.499 52.954 51 44 51 44 51 51 1 1 1 1 1 1 4944.2 15822 1616 15622 24217 31406 31406 1 SAPATGGVK Unmodified 786.42357 0.42356738 1496;2067 P68431;Q16695;Q71DI3 HIST1H3A;HIST3H3;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.2 no no 0 0 0 0 0 6 0 1 31.89 31.89 3 0.022183 6917 TMT1-5 55.549 42.59 77.437 86.058 77.052 88.775 91.663 75.202 73 87 80 87 94 73 1 1 1 1 1 1 11989 15823 1496;2067 15623 24218 31407 31407 1 SAPDGVPFIVK Unmodified 1128.6179 0.61791009 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 7 0 1 61.011 61.011 2 2.3916E-05 17843 TMT1-6 117.7 73.89 115.61 144.75 103.76 110.29 141.69 143.06 109 145 109 109 145 138 1 1 1 1 1 1 20166 15824 2309 15624 24219 31408 31408 1 SAPLDAALHALQEEQAR Acetyl (Protein N-term) 1860.933 0.93298965 1510 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 0 1 0 0 0 3 0 2 75.43 75.43 2;3 7.4741E-31 25167 TMT1-2 62.891 35.41 7.3434 15.209 15.28 0 15.156 15.558 7 15 15 0 15 15 1 1 1 0 1 1 8561.7 15825 1510 15625 24220;24221 31409;31410 31410 2 SAPLIADQAVLQLLPK Unmodified 1675.9873 0.98725705 2038 Q6PIU2-3;Q6PIU2;Q6PIU2-2 NCEH1 Neutral cholesterol ester hydrolase 1 yes no 0 0 0 0 0 8 0 1 81.126 81.126 3 1.3947E-05 25781 TMT1-7 87.519 71.884 46.645 34.047 66.517 34.449 49.689 60.41 44 36 65 36 51 58 1 1 1 1 1 1 4764.7 15826 2038 15626 24222 31411 31411 1 SAPLPNDSQAR Unmodified 1154.568 0.56799978 1152;1153 P48426;P48426-2 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 3.5 0.5 1 1 32.615 32.615 2 3.9305E-42 7339 TMT1-3 224.68 152.64 262 332.85 227.23 250.57 253.49 263.53 247 333 240 246 262 254 2 2 2 2 2 2 51923 15827 1152;1153 15627 24223;24224 31412;31413 31413 2 SAPSIPK Unmodified 698.39629 0.39629 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 6.5 0.5 1 1 40.027 40.027 2 0.0073807 9639 TMT1-6 128.57 34.304 558.89 655.18 369.98 440.29 581 828.76 526 657 399 433 602 793 2 2 2 2 2 2 80940 15828 1074 15628 24225;24226 31414;31415 31415 2 SAPSTGGVK Unmodified 802.41848 0.418482 1525 P84243 H3F3A Histone H3.3 yes yes 0 0 0 0 0 6 0 1 31.612 31.612 2 0.0004359 6834 TMT1-5 137.84 69.94 349.39 128.38 140.24 161.25 280.44 146.57 327 145 145 160 280 145 1 1 1 1 1 1 21776 15829 1525 15629 24227 31416 31416 1 SAPYEFPEESPIEQLEER Unmodified 2148.9851 0.98514438 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 2 0 1 68.452 68.452 3 7.24E-25 22052 TMT1-1 145.79 140.79 15.985 14.783 5.9029 15.792 13.367 46.523 15 15 7 15 15 44 1 1 1 1 1 1 7563.8 15830 1552 15630 24228 31417 31417 1 SAQASVSCALEALEPFWEVLVR Unmodified 2461.2311 0.23114551 2840 Q9UBN7;Q9UBN7-2 HDAC6 Histone deacetylase 6 yes no 0 0 0 0 0 8 0 1 102.98 102.98 3 4.8514E-06 33316 TMT1-7 68.291 65.004 0 4.1909 3.8921 4.14 0 0 0 4 4 4 0 0 0 1 1 1 0 0 931.43 15831 2840 15631 24229 31418 31418 1 SAQPASAEPR Unmodified 1012.4938 0.49377221 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4 2.38 1 1 1 1 1 1 23.649 23.649 2 2.0294E-30 4671 TMT1-1 217.5 133.01 681.62 783.4 733.71 686.93 763.68 631.67 643 791 753 680 781 613 11 11 11 10 11 11 362930 15832 3010 15632 24230;24231;24232;24233;24234;24235 31419;31420;31421;31422;31423;31424;31425;31426;31427;31428;31429 31422 11 SAQPLPLKIEELALAK Unmodified 1720.0135 0.013471805 2897 Q9UKV3-5;Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 1 8 0 1 71.753 71.753 3 0.001273 22187 TMT1-7 67.299 56.664 61.293 94.579 78.025 57.268 78.454 75.579 58 94 80 58 80 73 1 1 1 1 1 1 8023.7 15833 2897 15633 24236 31430 31430 1 SASASHQADIK Unmodified 1113.5415 0.54145068 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 5.33 1.25 1 1 1 27.202 27.202 3 3.5628E-05 5038 TMT1-4 109.16 79.098 219.75 257.79 177.79 227.55 239.12 225.56 207 259 189 222 246 218 3 3 3 3 3 3 18877 15834 1794 15634 24237;24238;24239 31431;31432;31433 31432 3 SASAVYVLDLK Acetyl (N-term) 1206.6496 0.64960415 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 1 0 0 0 0 5 0 1 76.566 76.566 2 0.00029129 24431 TMT1-4 53.751 16.592 108.12 98.901 139.77 68.876 137.33 112.28 102 102 138 73 138 109 1 1 1 1 1 1 17934 15835 2569 15635 24240 31434 31434 1 SASDLTWDNLK Unmodified 1248.5986 0.59863121 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6 0 1 59.264 59.264 3 2.8313E-07 17804 TMT1-5 105.4 82.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15836 451 15636 24241 31435 31435 1 SASLHLPK Unmodified 851.4865 0.48650199 407 P01009;P01009-2 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 8 0.816 1 1 1 40.351 40.351 3 0.0010065 8298 TMT1-8 97.798 66.509 320.91 549.04 423.11 316.11 273.96 584.88 304 543 436 317 295 556 2 2 2 2 2 2 70702 15837 407 15637 24242;24243;24244 31436;31437;31438 31438 3 SASPCIADK Unmodified 947.43823 0.43823117 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 5 0 1 37.704 37.704 2 0.0012384 9160 TMT1-4 122.33 83.367 85.281 62.728 40.764 59.505 77.581 97.99 80 65 44 58 80 94 1 1 1 1 1 1 6795.4 15838 1592 15638 24245 31439 31439 1 SASSGAEGDVSSEREP Unmodified 1563.6649 0.66487288 2257 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 0 0 0 0 1 2 0 1 31.126 31.126 3 5.1939E-05 7462 TMT1-1 82.259 69.742 54.016 64.444 64.248 43.617 34.352 68.31 51 65 65 44 37 65 2 2 2 2 2 2 3014.4 15839 2257 15639 24246 31440;31441 31441 2 SASYKPVFVTEITDDLHFYVQDVETGTQLEK Unmodified 3558.7406 0.74061059 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 1 7 0 1 83.808 83.808 5 3.8388E-06 26815 TMT1-6 59.573 52.077 38.201 43.658 34.844 29.099 27.706 37.585 36 44 36 29 29 36 1 1 1 1 1 1 5124.7 15840 2071 15640 24247 31442 31442 1 SATANTILGEEIFDSR Unmodified 1722.8424 0.84244331 2233 Q8NHV1 GIMAP7 GTPase IMAP family member 7 yes yes 0 0 0 0 0 4 0 1 65.769 65.769 2 1.3361E-07 20472 TMT1-3 86.738 61.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15841 2233 15641 24248 31443 31443 1 SATEHVQGHLGK Unmodified 1262.6367 0.63674805 881 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 0 0 6.67 1.25 1 1 1 28.589 28.589 4 0.002754 5596 TMT1-4 67.385 43.398 122.79 167.07 140.01 140 132.45 159.32 116 167 145 138 138 153 4 4 4 4 4 4 10764 15842 881 15642 24249;24250;24251 31444;31445;31446;31447 31444 4 SATEQSGTGIR Unmodified 1105.5364 0.53636531 373 O95831-3;O95831;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 2.5 0.5 1 1 26.088 26.088 2 2.4922E-05 5797 TMT1-2 117.14 62.154 54.285 26.337 51.351 44.386 34.333 37.396 51 29 51 44 36 36 1 1 1 1 1 1 5668.7 15843 373 15643 24252;24253 31448;31449 31449 2 SATGNSILGQPVFESK Unmodified 1633.8312 0.83115034 2400 Q96F15;Q96F15-2 GIMAP5 GTPase IMAP family member 5 yes no 0 0 0 0 0 7 0 1 59.595 59.595 3 0.0009693 17316 TMT1-6 51.798 21.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15844 2400 15644 24254 31450 31450 1 SATGNSILGQR Unmodified 1102.5731 0.57308516 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 6 0 1 37.115 37.115 2 2.3402E-05 9011 TMT1-5 117.99 97.287 61.435 94.974 53.778 66.668 62.316 76.04 58 94 58 65 65 73 1 1 1 1 1 1 11265 15845 2279 15645 24255 31451 31451 1 SATGNSILGR Unmodified 974.51451 0.51450765 2753 Q9NUV9;Q6P9H5 GIMAP4;GIMAP6 GTPase IMAP family member 4;GTPase IMAP family member 6 yes no 0 0 0 0 0 6 0 1 37.061 37.061 2 0.00032716 8978 TMT1-5 122.96 40.212 84.422 107.83 146.9 69.471 83.096 137.27 80 109 145 73 87 131 1 1 1 1 1 1 21646 15846 2753 15646 24256 31452 31452 1 SATLASIDAELQK Unmodified 1345.7089 0.70890994 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 5 0 1 61.981 61.981 3 1.8799E-08 18703 TMT1-4 122.46 94.176 160.84 239.43 177.09 153.11 247.58 261.57 152 238 184 154 252 252 1 1 1 1 1 1 18072 15847 998 15647 24257 31453 31453 1 SATLLQLITK Unmodified 1086.6649 0.66486028 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 72.374 72.374 2 1.7723E-09 20610 TMT1-8 172.27 107.24 208.48 129.48 197.29 133.77 282.13 225.4 196 138 196 138 283 219 1 1 1 1 1 1 23900 15848 68 15648 24258 31454 31454 1 SATSPEGK Unmodified 775.3712 0.37119746 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 4 0 2 28.113 28.113 2;3 0.0092593 5637 TMT1-3 75.213 43.984 115.89 75.369 115.85 102.18 127.4 143.47 109 80 116 102 131 138 2 2 2 2 2 2 6837.3 15849 685 15649 24259;24260 31455;31456 31456 2 SATTTVMNPK Unmodified 1048.5223 0.52229515 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 1 39.394 39.394 3 0.018655 9317 TMT1-6 56.202 24.568 146.43 149.36 148.89 131.84 131.17 207.32 138 152 152 131 138 198 1 1 1 1 1 1 9311.4 15850 485 15650 24261 31457 31457 1 SATYVNTEGR Unmodified 1096.5149 0.51490158 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 3 0 1 30.888 30.888 2 5.3972E-15 7695 TMT1-2 191.4 130.57 77.251 116.84 82.086 104.34 119.99 112.77 73 116 87 102 123 109 1 1 1 1 1 1 16842 15851 929 15651 24262 31458 31458 1 SAVDQAGGAQIVIDHLR Unmodified 1748.9169 0.91694566 1264 P52306-4;P52306;P52306-5 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 5 0 1 54.202 54.202 3 8.0603E-28 15620 TMT1-4 166.9 144.12 99.849 91.738 92.45 72.975 69.34 106.75 94 94 94 73 73 102 1 1 1 1 1 1 25325 15852 1264 15652 24263 31459 31459 1 SAVEAQNEVTENPK Unmodified 1514.7213 0.72126554 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 3 0 1 40.02 40.02 3 3.9333E-17 11322 TMT1-2 148.52 118.61 54.221 49.906 42.015 52.207 54.882 98.638 51 51 44 51 58 94 1 1 1 1 1 1 10246 15853 1924 15653 24264 31460 31460 1 SAVEDEGLK Unmodified 946.46074 0.46074075 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 0 2.5 0.5 1 1 41.06 41.06 2 0.00016745 11637 TMT1-2 147.51 112.41 720.26 839.25 864.47 805.17 708.85 1065 680 848 882 796 748 1018 4 4 4 4 4 4 119750 15854 618 15654 24265;24266 31461;31462;31463;31464 31463 4 SAVENCQDSWR Unmodified 1350.5623 0.56226248 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 3.5 0.5 1 1 37.109 37.109 2 3.2217E-08 10261 TMT1-2 155 135.01 84.102 177.09 142.03 85.599 112.72 136.43 80 174 145 88 116 131 3 3 3 3 3 3 32037 15855 1260 15655 24267;24268 31465;31466;31467 31466 3 SAVGFDYK Unmodified 885.42323 0.42323303 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 6 0 1 48.309 48.309 2 0.006986 13450 TMT1-5 103.74 66.093 352.05 329.68 244.55 195.71 267.77 286.58 331 336 254 197 274 276 1 1 1 1 1 1 26811 15856 701 15656 24269 31468 31468 1 SAVGFDYQGK Unmodified 1070.5033 0.50327426 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 48.255 48.255 3 0.026763 13409 TMT1-5 51.927 29.695 170.06 175.85 124.03 141.59 98.271 269.03 160 178 131 138 109 255 1 1 1 1 1 1 28142 15857 1766 15657 24270 31469 31469 1 SAVGFEYQGK Unmodified 1084.5189 0.51892433 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 2 47.21 47.21 2;3 1.8399E-09 13040 TMT1-5 173.37 123.33 616.67 676.83 560.32 552.25 533.71 929.25 581 684 581 545 565 886 3 3 3 3 3 3 101280 15858 1766 15658 24271;24272 31470;31471;31472 31472 3 SAVGHEYQSK Unmodified 1104.52 0.51998696 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 5.33 1.25 1 1 1 28.581 28.581 3 4.149E-07 5555 TMT1-4 159.83 103.57 238.59 367.39 164.47 255.19 206.6 404.51 225 363 184 246 222 385 4 4 4 4 4 4 27346 15859 1766 15659 24273;24274;24275 31473;31474;31475;31476 31474 4 SAVGHEYVAEVEK Unmodified 1416.6885 0.68850885 701 P14317;P14317-2 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 0 0 3 0.816 1 1 1 41.955 41.955 3;4 1.4557E-08 10919 TMT1-3 124.07 86.642 427.94 624.08 403.57 398.67 420.78 615.87 404 620 426 394 440 589 3 3 3 3 3 3 75843 15860 701 15660 24276;24277;24278 31477;31478;31479 31479 3 SAVPFLPVNPEYSATR Unmodified 1746.8941 0.89408495 2978 Q9Y2X7-3;Q9Y2X7 GIT1 ARF GTPase-activating protein GIT1 yes no 0 0 0 0 0 7 0 1 65.789 65.789 2 4.5858E-06 19772 TMT1-6 97.957 73.103 30.811 28.319 27.483 45.809 34.267 37.398 29 29 29 44 36 36 1 1 1 1 1 1 6059 15861 2978 15661 24279 31480 31480 1 SAVPPGADK Unmodified 840.43413 0.43413207 1137 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 0 5 0 2 34.886 34.886 2 0.00032113 8065 TMT1-4 99.802 74.879 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15862 1137 15662 24280;24281 31481;31482 31482 2 SAVQGPPER Unmodified 939.47739 0.47739386 424 P01876;P01877 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region yes no 0 0 0 0 0 3 0 1 27.487 27.487 2 0.0027279 6341 TMT1-2 103.19 92.927 22.911 82.794 46.715 75.963 55.366 52.786 22 80 51 73 58 51 1 1 1 1 1 1 7673 15863 424 15663 24282 31483 31483 1 SAVTALWGK Unmodified 931.51272 0.51271674 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 7.2 3.12 1 1 3 59.126 59.126 2;3 1.1132E-09 15419 TMT1-8 173.28 91.006 20066 19714 15906 13028 3554.1 9260.2 18882 20050 16424 12848 4274 8782 7 7 7 7 7 7 2960400 15864 1497 15664 24283;24284;24285;24286;24287 31484;31485;31486;31487;31488;31489;31490;31491 31489 8 SAVTALWGKVNVDEVGGEALGR Unmodified 2227.1597 0.15969512 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 1 8 0 1 68.817 68.817 3 1.0058E-08 21048 TMT1-7 82.189 66.597 38.245 43.782 27.236 29.691 20.35 37.795 36 44 29 29 22 36 1 1 1 1 1 1 9075.1 15865 1497 15665 24288 31492 31492 1 SAVTTVVNPK Unmodified 1014.571 0.5709599 500 P05556 ITGB1 Integrin beta-1 yes yes 0 0 0 0 0 7 0 1 43.109 43.109 3 0.00020945 10765 TMT1-6 103.7 81.614 377.05 466.33 434.27 364.88 376.74 603.27 356 469 444 364 396 576 2 2 2 2 2 2 22932 15866 500 15666 24289 31493;31494 31493 2 SAVVEMLIMR Unmodified 1147.6093 0.60933601 1700 Q13418;Q13418-2 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 8.5 0.5 1 1 69.762 69.762 2 0.000332 19594 TMT1-8 123.5 78.543 479.29 605 446.89 417.72 433.38 741.3 452 606 466 414 457 707 3 3 3 3 3 3 127400 15867 1700 15667 24290;24291 31495;31496;31497 31497 3 SAYEEQR Unmodified 881.38791 0.38791015 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 2 0 1 23.881 23.881 2 0.033413 4562 TMT1-1 89.142 70.36 23.495 14.265 6.5996 0 30.107 6.6029 22 15 7 0 29 7 1 1 1 0 1 1 1724.7 15868 1754 15668 24292 31498 31498 1 SAYEFSETESMLK Unmodified 1520.6705 0.67047553 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 4 0 1 60.819 60.819 3 1.5122E-06 18503 TMT1-3 114.72 92 68.675 133.64 66.644 89.283 97.634 144.32 65 131 73 87 102 138 1 1 1 1 1 1 21235 15869 608 15669 24293 31499 31499 1 SAYNVYVAER Unmodified 1170.5669 0.56693715 1535 Q00059 TFAM Transcription factor A, mitochondrial yes yes 0 0 0 0 0 4 0 1 42.778 42.778 2 0.00073409 11445 TMT1-3 108.4 60.243 84.688 101.01 107.98 77.873 166.47 134.9 80 102 109 80 167 131 1 1 1 1 1 1 14264 15870 1535 15670 24294 31500 31500 1 SAYQTIDSAEAPADPFAVPEGR Unmodified 2291.0706 0.070605346 2043 Q6RW13;Q6RW13-2 AGTRAP Type-1 angiotensin II receptor-associated protein yes no 0 0 0 0 0 3 0 1 63.66 63.66 3 1.1062E-12 20629 TMT1-2 96.708 91.334 39.473 20.395 21.042 30.06 20.333 37.796 37 22 22 29 22 36 1 1 1 1 1 1 17414 15871 2043 15671 24295 31501 31501 1 SCAEWVSLSK Unmodified 1165.5438 0.54375887 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 7 0 2 55.429 55.429 2;3 0.00028076 15719 TMT1-6 102.52 66.846 580.56 974.49 785.26 522.43 650.78 1032.5 550 965 804 532 679 986 3 3 3 3 3 3 52883 15872 316 15672 24296;24297 31502;31503;31504 31503 3 SCAHDWVYE Unmodified 1165.4499 0.44985848 846 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 0 3 0 1 44.909 44.909 2 0.031877 13218 TMT1-2 73.26 73.26 61.269 79.404 94.811 40.956 78.947 83.027 58 80 94 44 80 80 1 1 1 1 1 1 80858 15873 846 15673 24298 31505 31505 1 SCAVAEYGVYVK Unmodified 1344.6384 0.63838754 400 P00738-2;P00738;P00739;P00739-2 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 0 0 0 0 0 6 0 1 53.391 53.391 3 0.011885 15496 TMT1-5 56.951 43.046 115.35 151.57 142.38 108.56 111.15 151.4 109 152 145 109 116 145 1 1 1 1 1 1 12514 15874 400 15674 24299 31506 31506 1 SCDFLSSFR Unmodified 1117.4862 0.48624399 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 7 0 1 58.893 58.893 2 0.00036786 17004 TMT1-6 139.74 80.494 238.46 239.66 295.31 210.58 188.01 304.84 225 245 296 212 199 291 1 1 1 1 1 1 38191 15875 1014 15675 24300 31507 31507 1 SCDLCIIK Unmodified 1007.478 0.47798749 911 P27554 yes yes 0 0 0 0 0 6 0 1 52.852 52.852 2 0.0049121 15275 TMT1-5 75.38 31.244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15876 911 15676 24301 31508 31508 1 SCDSLNNR Unmodified 964.40324 0.40324264 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 3.2 1.72 1 1 1 1 1 24.551 24.551 2 5.0595E-27 4974 TMT1-1 214.69 146.37 1274 1151.3 1667.4 1316.5 1661.7 1417.3 1202 1189 1665 1324 1693 1374 7 7 7 7 7 7 339070 + 15877 32;554 15677 24302;24303;24304;24305;24306 31509;31510;31511;31512;31513;31514;31515;31516 31511 8 SCDTPPPCPR Unmodified 1185.4907 0.49067744 422 P01860 IGHG3 Ig gamma-3 chain C region yes no 0 0 0 0 0 3 0 1 28.862 28.862 2 0.00035336 6889 TMT1-2 121.67 106.46 23.343 36.509 13.245 15.201 21.529 22.838 22 36 15 15 22 22 1 1 1 1 1 1 3205.8 15878 422 15678 24307 31517 31517 1 SCENLAPFNTALK Unmodified 1463.7079 0.70786408 1677 Q13155-2;Q13155 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 0 7 0 1 58.184 58.184 3 0.00039689 16820 TMT1-6 80.96 38.171 30.563 51.373 49.635 51.86 49.145 52.964 29 51 51 51 51 51 1 1 1 1 1 1 9005.9 15879 1677 15679 24308 31518 31518 1 SCFEYTANPAGYNPSISIVGTLEAEK Unmodified 2817.3167 0.31672563 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 76.701 76.701 4 3.4445E-08 24627 TMT1-5 74.819 67.286 46.511 73.608 55.475 59.041 55.631 67.703 44 73 58 58 58 65 1 1 1 1 1 1 7645 15880 856 15680 24309 31519 31519 1 SCFLCMVCK Unmodified 1203.4909 0.49087714 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 9 0 1 61.6 61.6 2 8.7682E-15 16331 TMT1-8 188.29 135.71 130.08 173.49 171.82 145.05 169.65 165.72 123 174 175 145 174 160 1 1 1 1 1 1 20206 15881 830 15681 24310 31520 31520 1 SCGKPVEDFIQELLAK Unmodified 1832.9342 0.93423521 2356 Q96A00-2;Q96A00 PPP1R14A Protein phosphatase 1 regulatory subunit 14A yes no 0 0 0 0 1 7.5 0.5 1 1 81.023 81.023 3;4 1.6255E-06 25697 TMT1-6 97.823 70.794 238.81 266.55 213.23 292.46 279.01 317.17 225 269 225 284 290 305 3 3 3 3 3 3 25893 15882 2356 15682 24311;24312 31521;31522;31523 31521 3 SCGPSEDGVPR Unmodified 1159.4928 0.49278593 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7;Q9Y6F6-6 MRVI1 Protein MRVI1 yes no 0 0 0 0 0 2 0 1 31.398 31.398 2 0.027325 7545 TMT1-1 67.207 48.982 0 14.941 60.98 19.74 35.723 29.895 0 15 58 22 36 29 0 1 1 1 1 1 2889.5 15883 3056 15683 24313 31524 31524 1 SCGSSTPDEFPTDIPGTK Unmodified 1894.8255 0.82547262 1077 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 0 0 4 0 2 55.841 55.841 3;4 0.00048597 16533 TMT1-3 64.275 58.615 123.39 106.13 91.157 104.23 96.69 151.81 116 109 95 102 102 145 2 2 2 2 2 2 34461 15884 1077 15684 24314;24315 31525;31526 31525 2 SCLLHQFIEK Unmodified 1273.6489 0.64889264 809 P20338 RAB4A Ras-related protein Rab-4A yes yes 0 0 0 0 0 8 0 1 55.045 55.045 3 0.0046706 15571 TMT1-7 73.781 37.478 99.616 131.02 98.456 79.574 106.22 120.63 94 131 102 80 109 116 1 1 1 1 1 1 12746 15885 809 15685 24316 31527 31527 1 SCLLHQFTEK Unmodified 1261.6125 0.61250714 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 7.5 0.5 1 1 49.384 49.384 3 0.0026058 13338 TMT1-6 79.311 46.253 321.57 483.07 547.92 420.68 478.71 574.77 305 483 552 423 495 552 2 2 2 2 2 2 72030 15886 1378 15686 24317;24318 31528;31529 31528 2 SCNCLLLK Unmodified 1006.494 0.49397191 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 7.75 0.433 1 3 50.338 50.338 2;3 0.0019203 13612 TMT1-7 83.005 52.435 3049.4 4672.4 4162.2 2985.2 4174 4918.8 2887 4650 4243 3030 4283 4726 4 4 4 4 4 4 521500 15887 514 15687 24319;24320;24321;24322 31530;31531;31532;31533;31534 31534 5 SCNLDEQQELVERDDEK Unmodified 2105.9171 0.91714117 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 2 0 2 44.076 44.076 3 5.525E-19 12549 TMT1-1 138.55 130.92 77.174 132.82 81.485 96.315 83.474 90.36 73 131 87 94 87 87 1 1 1 1 1 1 21016 15888 570 15688 24323;24324 31535;31536 31535 2 SCPDAIK Unmodified 789.36909 0.36908897 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 0 4.5 0.5 1 1 35.615 35.615 2 0.0082628 8273 TMT1-4 117.93 93.011 408.52 412.47 601.25 426.13 426.95 551.73 386 423 598 430 445 529 2 2 2 2 2 2 72622 15889 835 15689 24325;24326 31537;31538 31538 2 SCPDAIKEVFDNK Unmodified 1521.7133 0.71334339 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 1 6 0 1 56.987 56.987 3 0.00032087 16883 TMT1-5 88.974 50.186 122.36 257.61 135.69 115.07 192.93 198.1 116 252 145 116 196 191 1 1 1 1 1 1 13618 15890 835 15690 24327 31539 31539 1 SCPNPGEIR Unmodified 1028.4709 0.47092828 557 P08174-4;P08174;P08174-3;P08174-5;P08174-2;P08174-6;P08174-7 CD55 Complement decay-accelerating factor yes no 0 0 0 0 0 3 0 1 32.006 32.006 2 0.0090298 8107 TMT1-2 90.263 68.799 37.966 74.306 48.225 51.807 56.476 52.754 36 73 51 51 58 51 1 1 1 1 1 1 6377.4 15891 557 15691 24328 31540 31540 1 SCPVVQSSQHLFLDLPK Unmodified 1953.9982 0.99823245 1332 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 61.671 61.671 4 0.03162 18115 TMT1-6 37.171 13.609 77.126 132.68 89.765 80.675 75.252 137.5 73 131 94 80 80 131 1 1 1 1 1 1 5392.5 15892 1332 15692 24329 31541 31541 1 SCSGVEFSTSGHAYTDTGK Unmodified 1989.8374 0.83743429 2959 Q9Y277 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 0 0 0 0 0 6 1 1 1 42.027 42.027 3 1.0628E-35 10850 TMT1-4 161.75 142.51 61.214 102.99 84.069 80.285 114.03 105.48 58 102 87 80 116 102 1 1 1 1 1 1 16173 15893 2959 15693 24330;24331 31542;31543 31542 2 SCSGVEFSTSGSSNTDTGK Unmodified 1906.7851 0.78506437 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 4 0 1 42.678 42.678 3 2.6487E-23 11367 TMT1-3 132.51 114.8 91.681 145.47 157.38 146.96 114.26 222.73 87 145 160 145 123 212 1 1 1 1 1 1 32645 15894 1119 15694 24332 31544 31544 1 SCSPELQQK Unmodified 1075.4968 0.49680868 735 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 35.403 35.403 3 0.00036163 8211 TMT1-4 111.46 71.833 153.53 187.64 185.73 151.27 260.2 170.6 145 189 189 153 261 167 2 2 2 2 2 2 16514 15895 735 15695 24333;24334 31545;31546 31546 2 SCSSSCAVHDLIFWR Unmodified 1823.8083 0.80832319 341 O95197-3;O95197-6;O95197-5 RTN3 Reticulon-3 yes no 0 0 0 0 0 8 0 1 59.175 59.175 3 6.8892E-15 17241 TMT1-7 131.96 113.13 53.943 80.43 62.968 50.824 61.982 106.96 51 80 65 51 65 102 1 1 1 1 1 1 17280 15896 341 15696 24335 31547 31547 1 SCTTESCDFVR Unmodified 1360.5387 0.53874985 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 3 0 1 37.428 37.428 2 8.3783E-06 10313 TMT1-2 126.39 108.16 38.119 19.687 68.826 27.216 20.171 46.328 36 22 66 29 22 44 1 1 1 1 1 1 9227.4 15897 1219 15697 24336 31548 31548 1 SCVAAFLDVVIGGR Unmodified 1462.7602 0.76023401 1807 Q14C86-3;Q14C86-4;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 83.566 83.566 2 0.00019602 24967 TMT1-8 80.69 59.183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15898 1807 15698 24337 31549 31549 1 SCVLFNCAALASQIAAEQNLDNDEGLK Unmodified 2950.3801 0.38007094 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6 0 1 78.518 78.518 4 0.023215 25438 TMT1-5 30.602 18.75 30.64 44.034 42.806 45.029 27.231 30.137 29 44 44 44 29 29 1 1 1 1 1 1 8511.2 15899 2267 15699 24338 31550 31550 1 SCVLPQTK Unmodified 931.4797 0.47970205 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 41.944 41.944 2 0.0012382 10371 TMT1-6 143.73 122.83 1818.7 2238.8 2074.2 1758.3 1986.4 2703.2 1717 2252 2122 1756 2065 2589 5 5 5 5 5 5 345570 15900 565 15700 24339;24340;24341;24342 31551;31552;31553;31554;31555;31556 31554 6 SDAAVDTSSEITTK Acetyl (N-term) 1465.6784 0.67839767 507 P06454-2;P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 1 0 0 0 0 2 0.707 1 2 1 51.322 51.322 2;3 7.7863E-79 15512 TMT1-1 118.28 95.637 367.31 554.18 374.03 361.18 357.99 605.93 347 550 393 357 378 578 3 3 3 3 3 3 326070 15901 507 15701 24343;24344;24345;24346 31557;31558;31559;31560 31559 4 SDAPTGDVLLDEALK Unmodified 1542.7777 0.77771779 2649 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 yes yes 0 0 0 0 0 2.5 0.5 1 1 67.735 67.735 2;3 0.00038687 22177 TMT1-2 83.617 54.66 54.066 41.918 74.922 28.662 42.113 75.55 51 44 73 29 44 72 2 2 2 1 2 2 6082.9 15902 2649 15702 24347;24348 31561;31562 31562 2 SDATADDLIDVVEGNR Unmodified 1688.7853 0.78532236 2961 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 0 2 0 1 68.74 68.74 3 1.0484E-05 22106 TMT1-1 88.73 69.406 23.255 36.265 28.177 44.661 35.037 46.97 22 36 30 43 37 45 2 2 2 2 2 2 5451.3 15903 2961 15703 24349 31563;31564 31563 2 SDAVALVDAFDFQDVTLGSVLGR Unmodified 2394.2067 0.2067049 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 6 0 2 95.667 95.667 3 1.8351E-13 31682 TMT1-5 102.45 86.696 7.4331 31.168 14.999 14.002 21.585 22.836 7 30 15 14 22 22 1 2 1 2 2 2 4144.4 15904 1824 15704 24350;24351 31565;31566;31567 31566 3 SDDIHLQK Unmodified 954.47706 0.47705951 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 4 0 1 38.118 38.118 3 0.0042455 9581 TMT1-3 87.616 39.112 177.22 138.76 213.37 104.03 127.06 150.94 167 145 210 109 131 145 1 1 1 1 1 1 8481.4 15905 2121 15705 24352 31568 31568 1 SDDKVTLEER Unmodified 1190.5779 0.57789577 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 1 2.5 0.5 1 1 36.274 36.274 3 0.00024793 9584 TMT1-1 89.9 39.693 107.6 192.44 147.23 115.39 139.4 202.83 102 190 152 116 145 194 1 1 1 1 1 1 10195 15906 409 15706 24353;24354 31569;31570 31569 2 SDDNRESLEK Unmodified 1191.5368 0.53675924 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 1 2 0 1 30.735 30.735 3 0.0030564 7302 TMT1-1 86.014 33.847 146.63 134.8 128.43 100.73 165.16 142.39 138 138 131 102 167 138 1 1 1 1 1 1 11393 15907 953 15707 24355 31571 31571 1 SDDNSYDEK Unmodified 1071.3993 0.3992627 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2 0 1 33.452 33.452 2 0.0061045 8377 TMT1-1 95.775 79.201 23.301 28.837 26.806 61.155 34.075 22.48 22 29 29 58 36 22 1 1 1 1 1 1 3484 15908 1186 15708 24356 31572 31572 1 SDEEYRELFDLALR Unmodified 1754.8475 0.84752869 2399 Q96F07-2;Q96F07 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 1 4 0 1 71.087 71.087 3 0.012979 22565 TMT1-3 55.98 36.656 30.668 59.221 25.296 53.307 49.335 45.496 29 58 29 51 51 44 1 1 1 1 1 1 4468.8 15909 2399 15709 24357 31573 31573 1 SDEFSLADALPEHSPAK Acetyl (Protein N-term) 1854.8636 0.86357268 2214 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like yes yes 0 1 0 0 0 2.5 0.5 1 1 64.922 64.922 3 1.0175E-07 20771 TMT1-1 65.943 39.813 108.55 140.04 31.9 91.896 68.778 67.327 102 139 36 87 72 65 2 2 1 2 2 2 17149 15910 2214 15710 24358;24359 31574;31575 31574 2 SDEGHPFR Unmodified 943.41479 0.41479361 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 3 1.87 1 1 1 1 24.652 24.652 3 0.0031231 5234 TMT1-2 91.783 50.28 638.36 800.5 776.15 663.18 809.03 987.48 603 805 792 663 835 948 6 6 6 6 6 6 84245 15911 2708;2709 15711 24360;24361;24362;24363 31576;31577;31578;31579;31580;31581 31579 6 SDEGQLSPATR Unmodified 1159.5469 0.54692999 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 32.2 32.2 2 2.1418E-12 7884 TMT1-1 178.53 145.78 30.782 44.429 18.603 53.425 64.281 36.542 29 44 22 51 65 36 1 1 1 1 1 1 7477.3 15912 1833 15712 24364 31582 31582 1 SDEMNVK Unmodified 821.35892 0.35891821 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 0 4 0 2 36.938 36.938 2;3 0.0080399 9153 TMT1-3 120.62 66.416 1098.9 1546.6 1194.9 990.69 1130.1 1831.1 1038 1542 1236 991 1184 1748 2 2 2 2 2 2 153600 15913 1356 15713 24365;24366 31583;31584 31584 2 SDFYDIVLVATPLNR Unmodified 1721.8988 0.89883598 2865 Q9UHG3-2;Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 yes no 0 0 0 0 0 7 0 1 81.805 81.805 2 2.4805E-14 26015 TMT1-6 117.2 99.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15914 2865 15714 24367 31585 31585 1 SDGDPVQPAVLQVHQTS Unmodified 1776.8642 0.86424139 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 4 1 1 1 49.845 49.845 2;3 0.0017041 15197 TMT1-2 60.093 41.26 184.59 315.04 268.34 186.14 236.39 356.76 175 312 274 189 244 341 2 2 2 2 1 2 39043 15915 372 15715 24368;24369 31586;31587 31586 2 SDGDYDYLIK Acetyl (Protein N-term) 1229.5452 0.54519866 1239 P51159-2;P51159 RAB27A Ras-related protein Rab-27A yes no 0 1 0 0 0 2.5 0.5 1 1 68.063 68.063 2 2.4456E-05 21844 TMT1-1 59.8 38.898 91.41 183.57 170.62 162.89 97.005 151.8 87 181 175 160 102 145 3 3 3 3 2 3 22188 15916 1239 15716 24370;24371 31588;31589;31590 31588 3 SDGEAELLQDLGWYHGNLTR Unmodified 2273.0713 0.071274048 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 5 0 1 70.777 70.777 3 0.0052466 22149 TMT1-4 36.166 21.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15917 2922 15717 24372 31591 31591 1 SDGGYTYDTSDLAAIK Unmodified 1675.7577 0.75771063 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 59.887 59.887 3 6.9627E-11 18171 TMT1-3 96.993 79.076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15918 1296 15718 24373 31592 31592 1 SDGIYIINLK Unmodified 1134.6285 0.62847478 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 7 0 1 66.159 66.159 2 0.00015948 19896 TMT1-6 133.13 111.67 53.625 118.4 84.262 56.069 122.47 105.24 51 116 87 58 123 102 1 1 1 1 1 1 16806 15919 579 15719 24374 31593 31593 1 SDGSFIGYK Unmodified 972.45526 0.45526144 978 P31751-2;P31751 AKT2 RAC-beta serine/threonine-protein kinase yes no 0 0 0 0 0 6 0 1 50.066 50.066 2 0.013625 14181 TMT1-5 83.948 42.961 76.976 154.93 96.056 103.8 104.04 151.6 73 152 102 102 109 145 1 1 1 1 1 1 8307 15920 978 15720 24375 31594 31594 1 SDGTETSTNLHQK Unmodified 1416.6481 0.6481006 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 3.5 0.5 1 1 28.833 28.833 3 7.8155E-11 5941 TMT1-3 130.56 85.812 46.448 97.177 46.103 67.662 33.76 53.403 44 95 51 65 37 51 2 2 2 2 2 2 9077 15921 1150 15721 24376;24377 31595;31596 31596 2 SDGVYTGLSTR Unmodified 1154.5568 0.5567664 957 P30273 FCER1G High affinity immunoglobulin epsilon receptor subunit gamma yes yes 0 0 0 0 0 3.5 0.5 1 1 41.331 41.331 2 1.2967E-11 10793 TMT1-3 141.29 109.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15922 957 15722 24378;24379 31597;31598 31598 2 SDIATLLK Unmodified 859.50148 0.50148335 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;Q9Y4E8-4 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 7 0 1 60.616 60.616 2 0.0035185 17679 TMT1-6 131.06 43.74 122.49 251.48 119.76 140.78 155.19 166.13 116 246 131 138 160 160 1 1 1 1 1 1 26613 15923 3012 15723 24380 31599 31599 1 SDIAVPIPK Unmodified 938.54368 0.54368251 1620 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 0 6 0 1 55.268 55.268 2 0.0019673 16205 TMT1-5 109.21 67.105 146.32 229.99 99.904 78.503 158.6 150.04 138 227 109 80 160 145 1 1 1 1 1 1 12987 15924 1620 15724 24381 31600 31600 1 SDIDEIVLVGGSTR Unmodified 1459.7518 0.75183739 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 3.5 0.5 1 1 62.518 62.518 2 1.1146E-26 19139 TMT1-3 179.98 143.46 176.79 192.62 239.62 170.93 264.5 232.3 167 196 240 174 268 225 3 3 3 3 3 3 75050 15925 640 15725 24382;24383 31601;31602;31603 31603 3 SDIGEVILVGGMTR Unmodified 1445.7548 0.75481428 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 67.431 67.431 2 3.5393E-07 21018 TMT1-5 113.95 67.34 37.954 58.082 64.045 58.565 53.784 122.12 36 58 65 58 58 116 1 1 1 1 1 1 15495 15926 1058 15726 24384 31604 31604 1 SDKDLETQVIQLNEQVHSLK Unmodified 2323.202 0.20195387 1862 Q15555-5;Q15555-3;Q15555;Q15555-4 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 1 5.5 0.5 1 1 64.489 64.489 4 9.3611E-07 19166 TMT1-5 81.576 62.284 237.71 344.42 332.97 268.69 233.33 430.4 225 344 339 268 249 410 2 2 2 2 2 2 120060 15927 1862 15727 24385;24386 31605;31606 31606 2 SDKPDMAEIEK Acetyl (N-term) 1303.5966 0.5965823 1435 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 1 0 0 0 1 2.5 0.5 1 1 50.854 50.854 3 0.0022445 15577 TMT1-2 40.767 17.889 429.48 606.23 701.44 512.53 454.85 994.39 407 608 705 515 490 945 3 3 3 3 3 3 156580 15928 1435 15728 24387;24388 31607;31608;31609 31609 3 SDLAVPSELALLK Unmodified 1354.7708 0.77078192 1622 Q08380 LGALS3BP Galectin-3-binding protein yes yes 0 0 0 0 0 6 0 1 72.986 72.986 3 1.2054E-05 23236 TMT1-5 103.88 69.196 30.445 74.789 49.638 20.279 43.011 60.601 29 73 51 22 44 58 1 1 1 1 1 1 7295.7 15929 1622 15729 24389 31610 31610 1 SDLFQEDLYPPTAGPDPALTAEEWLGGR Unmodified 3044.4403 0.44034624 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 4 0 2 89.704 89.704 3;4 0.022699 29774 TMT1-3 29.54 26.891 7.3451 29.605 45.226 12.778 13.514 15.805 7 29 44 14 14 15 1 3 3 2 2 1 3194 15930 971 15730 24390;24391 31611;31612;31613 31612 3 SDLLILDFGTFQLNSK Unmodified 1809.9513 0.95126548 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 8 0 1 88.523 88.523 3 1.7214E-05 28551 TMT1-7 86.378 65.127 23.266 36.295 26.351 61.33 26.224 37.628 22 36 29 58 29 36 1 1 1 1 1 1 3941.2 15931 2064 15731 24392 31614 31614 1 SDLLSAIR Unmodified 873.49198 0.4919813 3064 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 0 0 0 0 0 6 0 1 55.842 55.842 2 0.00044231 16454 TMT1-5 117.4 34.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15932 3064 15732 24393 31615 31615 1 SDLVNWFK Unmodified 1007.5076 0.50763136 208 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 0 8 0 1 69.911 69.911 2 0.0061428 21429 TMT1-7 109.21 39.261 84.909 92.993 77.645 65.259 61.611 98.446 80 94 80 65 65 94 1 1 1 1 1 1 7431.7 15933 208 15733 24394 31616 31616 1 SDLYSSGR Unmodified 883.40356 0.40356022 1056 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 0 3 0 1 32.916 32.916 2 7.5323E-08 8519 TMT1-2 173.28 138.33 61.437 94.981 53.404 75.048 82.84 137.28 58 94 58 73 87 131 1 1 1 1 1 1 13839 15934 1056 15734 24395 31617 31617 1 SDPAVNAQLDGIISDFEALKR Acetyl (N-term) 2300.1648 0.16484008 2864 Q9UHD8-5 SEPT9 Septin-9 yes yes 1 0 0 0 1 5 0 1 92.865 92.865 3 3.7638E-13 30789 TMT1-4 87.676 68.012 23.292 45.001 14.6 46.426 42.322 45.696 22 44 15 44 44 44 2 2 1 2 2 2 6869.2 15935 2864 15735 24396 31618;31619 31619 2 SDPIQEIR Unmodified 956.49271 0.49270958 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 2.5 0.5 1 1 41.961 41.961 2 0.0042318 11992 TMT1-2 126.52 100.14 200.27 269.43 196.12 166.87 211.29 233.82 189 269 204 167 217 225 2 2 2 2 2 2 48900 15936 2521 15736 24397;24398 31620;31621 31621 2 SDPLCVLFLNTSGQQWYEVER Unmodified 2540.2006 0.20057366 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 7 0 1 85.339 85.339 3 2.2737E-07 27378 TMT1-6 84.166 70.484 23.293 28.814 28.212 29.628 20.61 30.326 22 29 29 29 22 29 1 1 1 1 1 1 10257 15937 252 15737 24399 31622 31622 1 SDPLCVLLQDVGGGSWAELGR Unmodified 2228.0896 0.089566649 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 6 0 1 94.235 94.235 3 4.734E-14 31055 TMT1-5 111.4 94.381 23.266 14.399 44.986 36.827 49.58 60.413 22 15 44 37 51 58 2 1 2 2 2 2 8094.8 15938 2495 15738 24400 31623;31624 31623 2 SDPLQQWELVPIEVFEAR Unmodified 2155.095 0.094969603 343 O95248;O95248-5;O95248-4 SBF1 Myotubularin-related protein 5 yes no 0 0 0 0 0 5 0 1 93.489 93.489 3 0.012797 30969 TMT1-4 44.587 32.973 7.3388 6.5624 23.373 0 0 7.462 7 7 22 0 0 7 1 1 1 0 0 1 1004 15939 343 15739 24401 31625 31625 1 SDPNRETDDTLVLSFVGQTR Unmodified 2249.0924 0.09240342 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 1 4 0 1 62.365 62.365 3 4.219E-05 19164 TMT1-3 71.527 63.137 46.551 65.085 55.982 59.139 48.81 52.973 44 65 58 58 51 51 1 1 1 1 1 1 14124 15940 1888 15740 24402 31626 31626 1 SDPPTLLTPSK Unmodified 1154.6183 0.61830402 325 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 0 0 6 0 1 51.168 51.168 3 0.023414 14681 TMT1-5 51.979 30.421 235.56 413.63 275.32 328.16 159.76 361.08 223 408 292 318 179 343 1 1 1 1 1 1 159400 15941 325 15741 24403 31627 31627 1 SDPSIVR Unmodified 772.40792 0.40791731 1051;1394 P37235;P84074;P61601 HPCAL1;HPCA;NCALD Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta no no 0 0 0 0 0 3 0 1 32.006 32.006 2 0.0082004 8173 TMT1-2 118.69 53.014 84.735 101.14 99.981 87.264 99.339 97.369 80 102 102 87 102 94 1 1 1 1 1 1 29985 15942 1051;1394 15742 24404 31628 31628 1 SDPTSYAGYIEDLKK Unmodified 1685.8148 0.81483158 1300 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 0 1 6 0 1 63.176 63.176 3 0.0017018 19354 TMT1-5 67.685 44.585 122.29 212.08 186.15 112.46 171.9 174.18 116 210 189 116 175 168 1 1 1 1 1 1 13509 15943 1300 15743 24405 31629 31629 1 SDPVVSYR Unmodified 921.4556 0.45559579 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 3 0 1 36.897 36.897 2 0.0013021 10043 TMT1-2 143.12 89.242 253.42 404.86 345.69 312.77 406.34 420.13 240 402 356 312 416 405 2 2 2 2 2 2 69432 15944 685 15744 24406 31630;31631 31630 2 SDPYALVR Unmodified 919.47633 0.47633123 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 4.5 0.5 1 1 45.38 45.38 2 0.029273 12396 TMT1-3 82.305 34.562 323.35 387.64 330.02 242.57 352.95 423.79 305 390 338 246 362 407 2 2 2 2 2 2 88015 15945 2525 15745 24407;24408 31632;31633 31632 2 SDPYLEFHK Unmodified 1134.5346 0.53457439 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 5 0 1 48.131 48.131 3 0.0020003 13246 TMT1-4 88.496 74.238 160.23 304.65 224.11 175.72 174.9 276.43 152 300 232 176 184 264 1 1 1 1 1 1 33870 15946 252 15746 24409 31634 31634 1 SDQDYILK Unmodified 980.48148 0.48147619 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 4 0 2 49.441 49.441 2;3 0.018571 14024 TMT1-3 64.04 28.097 199.48 373 241.74 217.91 258.64 340.14 189 367 254 217 268 326 2 2 2 2 2 2 70059 15947 2943 15747 24410;24411 31635;31636 31635 2 SDQLQQAVQSQGFINYCQK Unmodified 2241.0484 0.048430116 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 7 0 1 61.498 61.498 4 0.0001135 18070 TMT1-6 65.085 48.4 99.429 130.5 130.29 70.013 106.91 113.14 94 131 131 73 109 109 1 1 1 1 1 1 8381.4 15948 336 15748 24412 31637 31637 1 SDQQLDCALDLMR Acetyl (Protein N-term) 1605.7127 0.71269147 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 1 0 0 0 2.5 0.5 1 1 76.697 76.697 2 1.5022E-37 25090 TMT1-1 153.97 117.59 43.221 96.298 71.882 24.881 35.725 84.261 41 94 73 26 36 80 3 3 4 3 1 4 42275 15949 1144;1145 15749 24413;24414 31638;31639;31640;31641 31639 4 SDQWKPLNLEEK Unmodified 1485.7464 0.74635808 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 1 6 0 1 54.4 54.4 3 0.0035543 15871 TMT1-5 73.91 51.107 146.73 166.39 84.254 151.11 125.16 143.54 138 167 94 145 131 138 1 1 1 1 1 1 13633 15950 1584 15750 24415 31642 31642 1 SDSALLEGAELVNR Unmodified 1472.7471 0.74708636 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 3 0 1 60.203 60.203 3 0.00056024 19238 TMT1-2 75.764 43.03 0 22.663 44.582 37.403 20.252 30.336 0 22 44 37 22 29 0 1 1 1 1 1 4677.9 15951 1105 15751 24416 31643 31643 1 SDSEVAGYIR Unmodified 1095.5197 0.51965261 2635 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 0 2 0 1 43.588 43.588 2 0.0014031 12383 TMT1-1 74.165 41.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15952 2635 15752 24417 31644 31644 1 SDSGTYICTAGIDK Unmodified 1486.661 0.66097347 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4.5 0.5 1 1 50.89 50.89 3 5.3354E-06 14326 TMT1-4 101.62 80.961 400.47 530.03 412.04 411.15 486.1 737.66 378 530 429 407 507 705 4 4 4 4 4 4 72699 15953 740 15753 24418;24419 31645;31646;31647;31648 31647 4 SDSHPSDALTR Unmodified 1184.5422 0.54217896 1194 P49748-3;P49748 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 26.107 26.107 3 0.039832 4600 TMT1-4 46.068 30.92 23.496 9.9524 10.007 26.466 13.939 15.592 22 11 11 25 15 15 1 1 1 1 1 1 1207.3 15954 1194 15754 24420 31649 31649 1 SDSLVVCEVDPELTEK Acetyl (Protein N-term) 1860.8663 0.8662748 215 O60234 GMFG Glia maturation factor gamma yes yes 0 1 0 0 0 2 0 1 74.343 74.343 3 2.5827E-13 24112 TMT1-1 71.08 54.941 145.61 257.16 196.06 166.68 221.25 187.7 138 254 203 167 225 182 2 2 2 2 2 2 72300 15955 215 15755 24421 31650;31651 31650 2 SDSYVELSQYR Unmodified 1345.615 0.61500956 1263 P52298-3;P52298 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 0 0 0 3 0 1 49.245 49.245 2 0.00020274 14965 TMT1-2 83.775 57.082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15956 1263 15756 24422 31652 31652 1 SDTAAAAVR Unmodified 860.43519 0.4351947 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 2.5 0.5 1 1 27.462 27.462 2 1.1137E-05 6187 TMT1-2 129.72 71.436 30.523 58.819 49.921 35.429 50.157 45.473 29 58 51 36 51 44 1 1 1 1 1 1 7405.7 15957 845 15757 24423;24424 31653;31654 31654 2 SDTALEEAVAEVLDHRPIEPK Unmodified 2318.1754 0.17540477 2103 Q86TP1 PRUNE Protein prune homolog yes yes 0 0 0 0 1 4 0 1 73.93 73.93 4 3.0702E-24 23602 TMT1-3 138.07 118.2 91.68 184.32 124.65 125.17 156.2 157.57 87 181 131 124 160 152 2 2 2 2 2 2 15715 15958 2103 15758 24425 31655;31656 31655 2 SDTFINLR Unmodified 964.49779 0.49779495 761 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 0 6 0 1 51.102 51.102 2 0.011355 14613 TMT1-5 98.009 24.372 232.92 487.97 294 319.15 231.08 367.57 221 478 313 312 247 351 1 1 1 1 1 1 42167 15959 761 15759 24426 31657 31657 1 SDTSGHFER Unmodified 1034.4417 0.44173664 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 4.5 2.29 1 1 1 1 22.868 22.868 3 0.00035364 4311 TMT1-1 112.36 92.799 77.522 84.136 64.392 84.082 90.706 109.34 73 85 68 82 94 105 4 4 4 4 4 4 6819.7 15960 804 15760 24427;24428;24429;24430 31658;31659;31660;31661 31658 4 SDTSGHFQR Unmodified 1033.4577 0.45772105 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 5 1.58 1 1 1 1 21.803 21.803 3 3.7558E-05 3707 TMT1-3 146.27 115.54 69.246 53.201 38.861 57.691 63.849 73.864 65 55 40 56 66 71 5 5 4 5 5 5 6787.3 15961 1234 15761 24431;24432;24433;24434 31662;31663;31664;31665;31666 31664 5 SDTVPSPR Unmodified 857.4243 0.42429566 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 3 0 1 30.029 30.029 2 0.0060766 7352 TMT1-2 110.12 34.926 77.278 109.36 83.922 73.197 84.537 90.33 73 109 87 73 87 87 1 1 1 1 1 1 8676.2 15962 442 15762 24435 31667 31667 1 SDVDLYQVR Unmodified 1093.5404 0.54038805 56 O00233;O00233-2 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 0 3 0 1 46.719 46.719 2 6.0378E-08 13970 TMT1-2 140.35 88.618 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15963 56 15764 24436 31668 31668 1 SDVEAIFSK Unmodified 994.49713 0.49712625 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 0 6 0 1 60.346 60.346 2 0.0024969 18203 TMT1-5 103.7 81.614 160.74 233.77 197.36 167.16 191.71 224.79 152 233 203 167 198 216 1 1 1 1 1 1 28827 15964 547 15765 24437 31669 31669 1 SDVEINYSLIEIK Unmodified 1521.7926 0.79263957 1498 Q5JPE7-2;Q15155;P69849;Q5JPE7 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 0 5 0 1 70.349 70.349 3 0.00016342 21980 TMT1-4 68.83 29.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15965 1498 15766 24438 31670 31670 1 SDVLQPGAEVTTDDR Unmodified 1601.7533 0.75329395 1293 P53992;P53992-2 SEC24C Protein transport protein Sec24C yes no 0 0 0 0 0 2 0 1 46.92 46.92 3 0.012157 13706 TMT1-1 51.265 32.901 53.878 103.99 53.964 51.204 70.341 106.72 51 102 58 51 73 102 1 1 1 1 1 1 8712.7 15966 1293 15767 24439 31671 31671 1 SDVLVEYQGEGR Unmodified 1350.6416 0.64155866 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 2 0 1 48.431 48.431 2 0.0027194 14341 TMT1-1 84.309 67.471 23.056 98.308 9.1862 23.105 20.909 30.317 22 94 15 22 22 29 1 1 1 1 1 1 6242 15967 725 15768 24440 31672 31672 1 SDVWSFGILLTEIVTHGR Unmodified 2029.0633 0.063275544 504 P06239-3;P06239 LCK Tyrosine-protein kinase Lck yes no 0 0 0 0 0 9 0 1 96.528 96.528 3 7.1866E-09 29790 TMT1-8 89.344 56.738 23.46 21.723 6.1524 0 21.972 30.287 22 22 7 0 22 29 1 1 1 0 1 1 4264.9 15968 504 15769 24441 31673 31673 1 SDVWSFGILLTELITK Unmodified 1820.9924 0.99240201 605 P09769 FGR Tyrosine-protein kinase Fgr yes yes 0 0 0 0 0 9 0 1 111.13 111.13 3 3.1763E-06 34417 TMT1-8 86.497 70.359 4.2151 11.365 3.2985 7.3277 6.7357 7.2698 4 11 4 7 7 7 1 1 1 1 1 1 900.63 15969 605 15770 24442 31674 31674 1 SDVWSFGILLTELTTK Unmodified 1808.956 0.95601651 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 9 0 2 101.02 101.02 2;3 6.8413E-27 31406 TMT1-8 166.7 133.76 108.26 108.84 107.03 110.36 127.54 128.54 102 109 110 109 131 124 3 2 3 3 3 3 45845 15970 673 15771 24443;24444 31675;31676;31677 31677 3 SDVWSFGILLTELVTK Unmodified 1806.9768 0.97675195 505 P06241-3;P06241-2;P06241 FYN Tyrosine-protein kinase Fyn yes no 0 0 0 0 0 9 0 1 107.83 107.83 3 2.5902E-19 33546 TMT1-8 121.79 94.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15971 505 15772 24445 31678 31678 1 SDVWSFGILQTELVTK Unmodified 1821.9513 0.95126548 549 P07947 YES1 Tyrosine-protein kinase Yes yes yes 0 0 0 0 0 8 0 1 84.558 84.558 3 1.9466E-11 27091 TMT1-7 117.37 89.726 30.644 44.045 42.146 59.822 56.364 45.296 29 44 44 58 58 44 1 1 1 1 1 1 7412.9 15972 549 15773 24446 31679 31679 1 SDVWSLGITLYELATGR Unmodified 1879.968 0.96797818 1123 P45985;P45985-2 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 0 0 0 0 0 9 0 1 105.03 105.03 3 0.00093183 32883 TMT1-8 57.525 40.089 0 7.3341 6.8112 7.2451 7 0 0 7 7 7 7 0 0 1 1 1 1 0 2293 15973 1123 15774 24447 31680;31681 31681 2 SDVYCEVCEFLVK Unmodified 1646.732 0.73202992 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 5 0 2 77.27 77.27 2;3 6.2557E-06 24674 TMT1-4 115.18 101.02 108.41 98.627 91.333 87.785 99.022 105.91 102 101 94 87 102 102 3 3 3 3 3 3 43882 15974 538 15775 24448;24449 31682;31683;31684 31683 3 SDYAQLLEDMQNAFR Unmodified 1799.8148 0.81484835 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 6.67 0.471 1 2 84.981 84.981 3 2.1281E-10 27205 TMT1-6 95.428 78.35 47.637 49.939 66.581 35.805 35.481 45.892 45 51 66 37 37 44 2 2 2 2 2 2 17191 15975 1057 15776 24450;24451;24452 31685;31686;31687 31687 3 SDYDMVDYLNELR Unmodified 1631.7137 0.71373732 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 4 0 1 74.119 74.119 2 0.00016405 23748 TMT1-3 79.283 54.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15976 1803 15777 24453 31688 31688 1 SDYLNTFEFMDK Unmodified 1508.6493 0.64934615 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 5.33 0.471 2 1 73.015 73.015 2;3 1.0745E-05 23154 TMT1-5 93.959 70.724 84.578 115.82 113.9 95.057 105.76 113.18 80 116 116 95 109 109 2 2 2 2 2 2 11905 15977 307 15778 24454;24455;24456 31689;31690;31691 31691 3 SDYSEAAK Unmodified 869.37668 0.37667677 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 3 0 1 33.703 33.703 2 0.0039391 8813 TMT1-2 128.61 99.458 99.692 146.34 72.649 103.89 173.67 103.78 94 145 80 102 174 102 1 1 1 1 1 1 11027 15978 1507 15779 24457 31692 31692 1 SEAAHQGVITWNPPQR Unmodified 1789.886 0.88597988 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6 0 1 41.769 41.769 3 9.1886E-05 10853 TMT1-5 78.244 73.175 61.714 64.451 32.753 45.357 41.602 68.103 58 65 36 44 44 65 1 1 1 1 1 1 10650 15979 570 15780 24458 31693 31693 1 SEALGVGDVK Unmodified 973.50803 0.50802529 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 4 0 1 46.725 46.725 2 0.0079116 12978 TMT1-3 87.298 49.212 99.22 207.63 100.07 110.22 157.14 150.09 94 203 109 109 160 145 1 1 1 1 1 1 15543 15980 2857 15781 24459 31694 31694 1 SEASSNLKK Unmodified 962.50327 0.50327426 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 1 6 0 1 31.876 31.876 3 0.036136 6934 TMT1-5 55.401 19.748 249.05 141.24 221.23 110.33 173.91 118.69 234 152 218 116 175 116 1 1 1 1 1 1 14001 15981 1916 15782 24460 31695 31695 1 SEAVVEYVFSGSR Unmodified 1428.6885 0.68850885 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 6 0 1 63.671 63.671 2 1.6806E-16 19537 TMT1-5 177.47 126.41 61.256 94.477 84.228 88.189 100.07 74.963 58 94 87 87 102 73 1 1 1 1 1 1 21376 15982 2071 15783 24461 31696 31696 1 SEAYNTFSER Unmodified 1202.5204 0.52038089 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 3 0 1 39.011 39.011 2 1.2661E-09 10935 TMT1-2 175.41 155.42 84.708 116.18 91.82 55.903 107.3 120.59 80 116 94 58 109 116 1 1 1 1 1 1 22682 15983 666 15784 24462 31697 31697 1 SEDALFAL Unmodified 864.4229 0.42289868 2063 Q6ZVM7-5;Q6ZVM7;Q6ZVM7-3;Q6ZVM7-2;Q6ZVM7-4 TOM1L2 TOM1-like protein 2 yes no 0 0 0 0 0 3 0 1 76.976 76.976 2 0.033235 25758 TMT1-2 79.454 57.164 14.981 0 6.8399 14.784 5.8432 23.285 14 0 7 14 7 22 1 0 1 1 1 1 4432.8 15984 2063 15785 24463 31698 31698 1 SEDCFILDHGK Unmodified 1319.5816 0.58160094 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 4 1.67 1 2 1 1 46.977 46.977 3;4 2.0694E-12 12996 TMT1-3 173.04 160.47 4230.8 6039.5 5896.6 4485.1 6506.9 5642.1 4004 6037 5989 4537 6603 5467 6 6 6 6 6 6 745090 + 15985 506 15786 24464;24465;24466;24467;24468 31699;31700;31701;31702;31703;31704 31700 6 SEDCFILDHGKDGK Unmodified 1619.725 0.72497071 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 4.5 0.5 1 1 44.908 44.908 4 2.6626E-11 11929 TMT1-4 128.76 104.72 2362.1 3116.3 2702.2 2180 2157.4 3463.7 2231 3121 2771 2179 2272 3307 5 5 5 5 5 5 242190 + 15986 506 15787 24469;24470 31705;31706;31707;31708;31709 31707 5 SEDEVGSLIEYEFR Unmodified 1671.7628 0.76279601 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 2.5 0.5 2 2 71.387 71.387 2;3 7.8179E-19 23639 TMT1-2 159.52 143.12 116.66 138.13 113.51 94.5 136.61 129.35 110 139 117 95 139 125 5 5 5 5 5 5 60598 15987 856 15788 24471;24472;24473;24474 31710;31711;31712;31713;31714 31714 5 SEDFGVNEDLADSDAR Unmodified 1738.7282 0.72820141 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 2 0 1 52.638 52.638 3 1.2884E-08 16023 TMT1-1 107.75 90.448 84.608 139.64 88.663 95.188 120.65 136.2 80 138 94 94 124 131 2 2 2 2 2 2 59196 15988 461 15789 24475 31715;31716 31716 2 SEDFSLPAYMDR Unmodified 1429.6184 0.61838038 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 4 0 1 61.235 61.235 2 2.3709E-18 18749 TMT1-3 183.85 156.11 100.06 168.06 172.63 113.44 162.45 204.3 95 167 174 116 167 196 2 2 2 2 2 2 50500 15989 677 15790 24476 31717;31718 31718 2 SEDLLDYGPFR Unmodified 1310.6143 0.61428128 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 4 0 1 66.905 66.905 2 1.0041E-06 20956 TMT1-3 143.04 105.45 207.39 298.04 238.55 219.47 243.94 339.49 196 297 247 218 254 325 2 2 2 2 2 2 45174 15990 478 15791 24477 31719;31720 31720 2 SEDPDQQYLILNTAR Unmodified 1761.8533 0.85334235 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 3 0 1 56.841 56.841 3 2.9919E-19 17920 TMT1-2 161.49 143.13 0 60.889 49.237 51.451 72.198 52.306 0 58 51 51 73 51 0 1 1 1 1 1 25360 15991 2444 15792 24478 31721 31721 1 SEDQDLQGLK Unmodified 1131.5408 0.54078198 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 2.5 0.5 1 1 46.356 46.356 3 0.0011648 13703 TMT1-2 90.05 59.612 169.72 209.46 151.43 185.64 226.39 225.93 160 210 160 182 232 218 2 2 2 2 2 2 21130 15992 1247 15793 24479;24480 31722;31723 31723 2 SEEENLFEIITADEVHYFLQAATPK Unmodified 2893.4022 0.40216982 567 P08567 PLEK Pleckstrin yes yes 0 0 0 0 0 5.8 0.748 2 2 1 97.215 97.215 3;4 8.1563E-20 32096 TMT1-5 114.57 96.012 540.72 606.67 608.22 516.68 588.12 793.38 510 614 618 516 611 760 14 15 13 15 15 15 128270 15993 567 15794 24481;24482;24483;24484;24485 31724;31725;31726;31727;31728;31729;31730;31731;31732;31733;31734;31735;31736;31737;31738 31731 15 SEEFLIAGK Unmodified 992.51786 0.51786169 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 5 0 1 56.26 56.26 2 0.0018017 16480 TMT1-4 112.84 72.84 61.226 110.58 75.671 88.581 106.31 105.7 58 109 80 87 109 102 1 1 1 1 1 1 9647.4 15994 410 15795 24486 31739 31739 1 SEEMQTVQQEQLLQETQALQQSFLSEK Unmodified 3179.5292 0.5292376 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 82.19 82.19 4 0.018366 26619 TMT1-4 32.962 20.997 30.744 20.578 45.285 20.957 20.752 37.784 29 22 44 22 22 36 1 1 1 1 1 1 5770.5 15995 1833 15796 24487 31740 31740 1 SEEPEESVPFSCDWR Unmodified 1852.7574 0.75739305 1333 P56202 CTSW Cathepsin W yes yes 0 0 0 0 0 2 0 1 59.451 59.451 3 0.0031344 18646 TMT1-1 61.641 56.836 23.171 36.029 42.653 60.072 41.438 53.184 22 36 44 58 44 51 1 1 1 1 1 1 4823.3 15996 1333 15797 24488 31741 31741 1 SEEQLKEEGIEYK Unmodified 1580.757 0.75698235 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 1 3.5 0.5 1 1 48.264 48.264 3;4 3.7061E-05 13526 TMT1-3 102.73 81.476 399.79 550.79 509.29 386.24 514.44 646.24 378 551 519 390 530 620 2 2 2 2 2 2 42840 15997 600 15798 24489;24490 31742;31743 31743 2 SEETLDEGPPK Unmodified 1200.551 0.55101232 1541 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 0 2 0 1 42.039 42.039 3 3.8329E-05 11749 TMT1-1 108.47 95.489 230.4 235.24 210.77 220.79 261.95 239.84 217 239 218 218 268 232 2 2 2 2 2 2 17099 15998 1541 15799 24491 31744;31745 31745 2 SEEWADNHLPLTDAELAR Unmodified 2065.9705 0.97049737 231 O60664-4;O60664-3;O60664;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 0 3 0 1 57.92 57.92 3 1.6769E-10 18393 TMT1-2 112.16 96.524 53.88 72.701 80.037 42.42 47.966 99.901 51 73 80 44 51 95 1 1 1 1 1 1 48189 15999 231 15800 24492 31746 31746 1 SEFEQNLSEK Unmodified 1209.5513 0.55134667 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 2 0 1 47.386 47.386 3 0.0097367 13888 TMT1-1 64.439 45.196 61.307 71.952 94.897 49.038 55.798 76.226 58 73 94 51 58 73 1 1 1 1 1 1 4978 16000 1913 15801 24493 31747 31747 1 SEFVVPDLELPSWLTTGNYR Unmodified 2322.1532 0.15321276 766 P17900 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 0 0 0 0 0 7 0 1 89.328 89.328 3 2.1705E-06 28798 TMT1-6 78.794 63.029 14.871 29.853 0 7.2447 21.602 31.364 14 29 0 7 22 30 1 1 0 1 1 1 8998.2 16001 766 15802 24494 31748 31748 1 SEGEIAR Unmodified 760.37153 0.37153181 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 2 0 1 25.588 25.588 2 0.027324 5280 TMT1-1 91.906 19.886 53.718 118.66 68.282 74.386 70.887 59.805 51 116 73 73 73 58 1 1 1 1 1 1 7665.9 16002 1217 15803 24495 31749 31749 1 SEGGFIWACK Unmodified 1153.5226 0.5226295 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 7 0 1 58.871 58.871 2 0.00012165 17042 TMT1-6 137.14 120.36 91.652 169.13 142.21 91.442 150.14 135.36 87 167 145 94 152 131 1 1 1 1 1 1 15828 16003 307 15804 24496 31750 31750 1 SEHPGLSIGDTAK Unmodified 1310.6466 0.64664404 900 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 0 5.5 0.5 1 1 39.261 39.261 3 8.2293E-11 9725 TMT1-4 129.76 119.66 176.78 237.92 202.94 204.68 271.35 170.28 167 238 210 203 274 167 1 1 1 1 1 1 41566 16004 900 15805 24497;24498 31751;31752 31751 2 SEHPPLCGR Unmodified 1051.4869 0.48691269 1850 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 4 0 1 25.132 25.132 3 0.020725 4489 TMT1-3 56.81 50.151 38.407 28.043 13.33 22.986 14.099 15.588 36 29 15 22 15 15 1 1 1 1 1 1 879.59 16005 1850 15806 24499 31753 31753 1 SEIDLFNIR Unmodified 1105.5768 0.57677356 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 5.5 0.5 1 1 65.173 65.173 2 0.00098314 20176 TMT1-5 125.98 81.214 687.99 1000.9 742.42 610.49 811.66 859.49 650 996 770 613 831 828 4 4 4 4 4 4 140100 16006 578 15807 24500;24501 31754;31755;31756;31757 31757 4 SEIDLLDIR Unmodified 1072.5764 0.57643921 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 3 0 1 65.063 65.063 2 0.0072865 21139 TMT1-2 93.178 47.498 54.12 42.07 65.613 43.101 57.426 36.737 51 44 65 44 58 36 1 1 1 1 1 1 12623 16007 670 15808 24502 31758 31758 1 SEIDLLNIR Unmodified 1071.5924 0.59242362 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 4.5 0.5 1 1 62.188 62.188 2 2.3342E-05 18785 TMT1-4 154.28 61.084 600.91 702.8 661.68 575.45 780.49 717.53 567 709 677 576 795 694 2 2 2 2 2 2 177210 16008 555 15809 24503;24504 31759;31760 31760 2 SEIDLLNIRR Unmodified 1227.6935 0.69353465 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 6 0 1 51.123 51.123 3 0.0014992 14578 TMT1-5 91.855 37.315 61.005 156.38 73.978 64.926 90.928 128.52 58 152 80 65 94 123 1 1 1 1 1 1 9783 16009 555 15810 24505 31761 31761 1 SEIDLVQIK Unmodified 1043.5863 0.58627561 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 5 0 1 59.501 59.501 2 0.00030542 17674 TMT1-4 141.48 21.326 253.18 368.38 237.47 313.81 286.97 270.04 239 366 254 305 297 261 2 2 2 2 2 2 26550 16010 804 15811 24506 31762;31763 31762 2 SEIDMNDIK Unmodified 1063.4856 0.48557529 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 4 0 1 51.701 51.701 3 0.0021902 14909 TMT1-3 87.149 71.487 517.99 859.79 578.89 507.42 649.94 833.19 490 850 606 507 671 799 2 2 2 2 2 2 45624 16011 461 15812 24507 31764;31765 31764 2 SEIQAEQDR Unmodified 1074.4942 0.49416614 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 2 0 1 28.262 28.262 2 0.017212 6342 TMT1-1 79.148 50.94 15.745 45.414 20.348 14.639 28.884 22.628 15 44 22 15 29 22 1 1 1 1 1 1 2559.5 16012 1913 15813 24508 31766 31766 1 SEISLLPSDIDR Unmodified 1343.6933 0.69325988 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 4 0 1 61.31 61.31 2 2.8063E-13 18800 TMT1-3 169.65 118.38 99.054 144.57 181.26 121.34 180.18 134.5 94 145 181 124 182 131 2 2 2 2 2 2 46796 16013 1112 15814 24509 31767;31768 31768 2 SELDMLDIR Unmodified 1090.5329 0.53285983 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 3.5 0.5 1 1 62.341 62.341 2 0.0034319 19052 TMT1-3 101.65 36.608 283.98 432.29 236.64 242.8 288.18 482.14 268 428 254 240 302 460 2 2 2 2 2 2 72331 16014 555 15815 24510;24511 31769;31770 31770 2 SELDQLRQEAEQLK Acetyl (Protein N-term) 1727.869 0.86899241 1453 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 1 0 0 1 2.67 0.471 1 2 70.432 70.432 2;3 2.9998E-22 23305 TMT1-2 106.13 63.341 269.12 356.08 272.75 265.32 254.59 394.62 254 356 284 262 268 377 4 4 4 4 4 4 123970 16015 1453 15816 24512;24513;24514 31771;31772;31773;31774 31773 4 SELECVTNITLANVIR Unmodified 1830.9509 0.9509479 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 0 6 0 1 74.552 74.552 3 0.014474 23790 TMT1-5 48.623 19.647 92.452 77.458 85.402 81.231 59.521 137.95 87 80 87 80 65 131 1 1 1 1 1 1 15013 16016 3064 15817 24515 31775 31775 1 SELEEQLTPVAEETR Unmodified 1729.837 0.83702358 432 P02649 APOE Apolipoprotein E yes yes 0 0 0 0 0 2 0 1 54.554 54.554 2 0.00054696 16709 TMT1-1 63.662 35.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16017 432 15818 24516 31776 31776 1 SELELTLGK Unmodified 988.54408 0.54407645 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 58.35 58.35 2 0.0023543 17227 TMT1-4 104.01 29.713 122.69 198.08 131.32 123.23 179.84 141.98 116 196 138 123 182 138 2 2 2 2 2 2 17947 16018 1833 15819 24517 31777;31778 31777 2 SELEQLR Acetyl (Protein N-term) 915.46616 0.46616048 1454;2674 P62879;Q9HAV0 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 no no 0 1 0 0 0 2 0 1 49.81 49.81 2 0.00017707 14813 TMT1-1 105.27 35.879 23.278 20.139 38.029 15.244 30.438 7.0412 22 21 37 15 30 7 2 2 2 1 2 1 21560 16019 1454;2674 15820 24518 31779;31780 31779 2 SELEQLRQEAEQLR Acetyl (N-term) 1769.8908 0.89079049 1454;2674 P62879;Q9HAV0 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 no no 1 0 0 0 1 2 0 1 66.105 66.105 2 4.9441E-17 21153 TMT1-1 84.198 45.05 0 7.1887 15.512 6.4369 15.394 0 0 7 15 7 15 0 0 1 1 1 1 0 19593 16020 1454;2674 15821 24519 31781 31781 1 SELFEAFDLFDVQDFGK Unmodified 2005.9309 0.93092397 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 6 0 1 97.355 97.355 3 0.0001786 32241 TMT1-5 74.786 57.297 27.603 28.569 25.446 18.688 29.892 18.335 26 29 26 19 30 18 2 2 2 2 2 2 3840.5 16021 722 15822 24520 31782;31783 31782 2 SELGNQSPSTSSR Unmodified 1348.6219 0.62188585 1963 Q5JTV8;Q5JTV8-3 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 0 3 0 1 28.963 28.963 3 7.8021E-06 6931 TMT1-2 83.474 61.468 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16022 1963 15823 24521 31784 31784 1 SELHIENLNMEADPGQYR Unmodified 2114.9691 0.96911716 1024 P35613-2;P35613;P35613-3;P35613-4 BSG Basigin yes no 0 0 0 0 0 3 0 1 53.88 53.88 3 4.9741E-05 16758 TMT1-2 76.826 65.451 62.888 41.994 34.769 30.223 26.299 77.068 59 44 36 30 29 73 1 1 1 1 1 1 8847.2 16023 1024 15824 24522 31785 31785 1 SELKELLTR Unmodified 1087.6237 0.62372375 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 1 8 0 1 53.633 53.633 3 0.0053924 15022 TMT1-7 81.335 52.026 251.25 416.63 159.44 227.64 234.53 358.95 237 410 181 221 246 343 1 1 1 1 1 1 12861 16024 899 15825 24523 31786 31786 1 SELSGNFEK Unmodified 1009.4716 0.47163978 1234 P50995-2;P50995;P27216;P27216-2 ANXA11;ANXA13 Annexin A11;Annexin A13 yes no 0 0 0 0 0 4.5 0.5 1 1 45.534 45.534 2;3 0.0026046 12515 TMT1-3 84.213 40.966 238.43 366.93 193.11 244.45 338.07 276.04 225 363 210 240 343 268 2 2 2 2 2 2 41924 16025 1234 15826 24524;24525 31787;31788 31787 2 SELTDSASVLDNFK Unmodified 1524.7308 0.7307676 206 O43815;O43815-2 STRN Striatin yes no 0 0 0 0 0 5 0 1 66.79 66.79 3 8.8392E-05 20578 TMT1-4 86.729 61.28 108.45 107.38 76.685 64.764 90.935 128.52 102 109 80 65 94 123 1 1 1 1 1 1 10408 16026 206 15827 24526 31789 31789 1 SELVAMLEEEELR Unmodified 1546.7549 0.75487386 1072 P40616-2;P40616 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 0 0 3 0 1 74.311 74.311 3 0.00068917 24784 TMT1-2 58.487 36.441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16027 1072 15828 24527 31790 31790 1 SELVAMLEEEELRK Unmodified 1674.8498 0.84983687 1072 P40616-2;P40616 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 0 1 4 0 1 67.892 67.892 3 0.000258 21327 TMT1-3 81.185 45.164 46.661 50.282 49.967 44.07 55.513 91.158 44 51 51 44 58 87 1 1 1 1 1 1 6273.1 16028 1072 15829 24528 31791 31791 1 SELVANNVTLPAGEQR Unmodified 1696.8744 0.87441214 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 5 0 1 50.752 50.752 3 1.6545E-06 14295 TMT1-4 92.319 70.479 217.4 268.15 203.69 288.26 183.87 351.86 205 269 216 278 200 335 1 1 1 1 1 1 23283 16029 1089;1090 15830 24529 31792 31792 1 SELVTVTESFSTPK Unmodified 1523.7719 0.77190413 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 6 0 1 63.345 63.345 2 8.6434E-28 19410 TMT1-5 191.53 101.42 84.942 85.529 78.469 56.818 101 89.86 80 87 80 58 102 87 1 1 1 1 1 1 24967 16030 740 15831 24530 31793 31793 1 SELWVYK Unmodified 923.47527 0.4752686 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 7 0 1 58.189 58.189 2 0.020011 16774 TMT1-6 97.602 10.736 84.656 100.92 113.45 125.19 132.36 181.71 80 102 116 123 138 174 1 1 1 1 1 1 7836.3 16031 1785 15832 24531 31794 31794 1 SEMEVQDAELK Unmodified 1277.5809 0.58093224 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 2.5 0.5 1 1 49.193 49.193 3 5.2962E-05 14663 TMT1-1 81.92 60.288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16032 2943 15833 24532;24533 31795;31796 31795 2 SEMLEIVQAIYK Unmodified 1422.7429 0.74285261 1051 P37235 HPCAL1 Hippocalcin-like protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 80.526 80.526 3 1.0915E-07 25514 TMT1-7 120.96 10.298 131.77 121.17 112.28 118.97 117.73 189.59 124 124 116 117 124 181 3 3 3 3 3 3 23225 16033 1051 15834 24534;24535 31797;31798;31799 31798 3 SENEEFVEVGR Unmodified 1293.5837 0.58370943 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 2 0 1 44.596 44.596 2 2.8061E-12 12807 TMT1-1 178.1 103.83 107.8 168.19 133.49 116.6 118.92 127.72 102 167 138 116 123 123 1 1 1 1 1 1 34131 16034 635 15835 24536 31800 31800 1 SENLGQGDKPDYFSSVATVVYLR Unmodified 2544.2496 0.24963234 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 1 7 0 1 68.734 68.734 3 0.0052096 20889 TMT1-6 43.494 32.626 46.38 80.8 71.335 57.682 77.665 97.988 44 80 73 58 80 94 1 1 1 1 1 1 13148 16035 913 15836 24537 31801 31801 1 SENLHVSHILQK Unmodified 1403.7521 0.75211216 525 P07093-2;P07093-3 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 7.5 0.5 1 1 40.322 40.322 4 0.00046499 9781 TMT1-6 82.85 58.059 268.83 381.15 301.65 262.87 293.38 364.73 254 380 312 262 304 350 2 2 2 2 2 2 22372 16036 525 15837 24538;24539 31802;31803 31802 2 SEPGQVK Unmodified 743.38137 0.38136821 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 4 0 1 30.47 30.47 2 0.027332 6543 TMT1-3 91.9 19.667 77.555 78.832 63.313 42.559 93.532 82.611 73 80 65 44 94 80 1 1 1 1 1 1 4245.5 16037 705 15838 24540 31804 31804 1 SEPGTVPFDR Unmodified 1103.5247 0.52473799 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 3.5 0.5 1 1 42.321 42.321 2 0.00055632 12183 TMT1-2 113.74 63.927 222.98 243.57 187.86 190.21 217.01 279.5 210 246 196 188 225 268 2 2 2 2 2 2 31053 16038 3051 15839 24541;24542 31805;31806;31807 31805 3 SEPIPESNDGPVK Unmodified 1367.6569 0.65687437 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 2.5 0.5 2 2 44.076 44.076 2;3 5.2904E-28 12835 TMT1-2 197.73 147.13 1704 2332.3 2166.6 1708.8 1943.2 2687.4 1611 2334 2210 1715 2021 2573 7 7 7 7 7 7 370880 16039 955 15840 24543;24544;24545;24546 31808;31809;31810;31811;31812;31813;31814 31814 7 SEPPLPPGGQELLELLLR Unmodified 1957.0884 0.088427662 3015 Q9Y4H4 GPSM3 G-protein-signaling modulator 3 yes yes 0 0 0 0 0 7 0 1 94.765 94.765 3 5.0326E-09 30825 TMT1-6 103.87 91.947 70.21 72.254 40.926 44.742 48.409 83.899 66 73 44 44 51 80 2 2 2 2 2 2 12320 16040 3015 15841 24547 31815;31816 31816 2 SEPQNLGGAAGR Unmodified 1155.5632 0.56324876 1371 P61020;P61020-2 RAB5B Ras-related protein Rab-5B yes no 0 0 0 0 0 3 0 1 31.287 31.287 2 4.1757E-08 7876 TMT1-2 132.44 84.4 37.933 81.769 47.439 59.393 62.394 83.5 36 80 51 58 65 80 1 1 1 1 1 1 12690 16041 1371 15842 24548 31817 31817 1 SEPTQALELTEDDIKEDGIVPLR Unmodified 2567.2966 0.29664212 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 1 3.25 0.829 1 1 2 71.124 71.124 3;4 6.8851E-31 23546 TMT1-2 142.04 127.43 214.79 298.31 256.24 209.88 232.62 255.6 203 298 263 210 240 246 5 5 5 5 5 5 46832 16042 171 15843 24549;24550;24551;24552 31818;31819;31820;31821;31822 31819 5 SEQFINLR Unmodified 1005.5243 0.52434406 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5.5 0.5 1 1 48.699 48.699 2 4.9687E-05 13555 TMT1-5 160.63 101.65 818.47 1385.5 1208.8 806.36 1123.9 1343.1 776 1373 1231 823 1154 1290 2 2 2 2 2 2 151030 16043 536 15844 24553;24554 31823;31824 31824 2 SEQLTDR Unmodified 847.40356 0.40356022 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 2 0 1 27.935 27.935 2 0.0076505 6152 TMT1-1 125.31 35.562 30.469 51.113 65.579 34.357 57.535 45.262 29 51 65 36 58 44 1 1 1 1 1 1 8836.3 16044 1112 15845 24555 31825 31825 1 SESEEEVLLVSSSR Unmodified 1549.7471 0.74714594 380 O95989 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes yes 0 0 0 0 0 2 0 1 52.735 52.735 3 2.4616E-12 15994 TMT1-1 111.38 93.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16045 380 15846 24556 31826 31826 1 SESEVEEAAAIIAQRPDNPR Unmodified 2181.0662 0.06618867 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 1 3 0 1 58.416 58.416 4 4.177E-07 18567 TMT1-2 87.24 79.794 54.207 64.974 31.734 68.377 41.313 45.725 51 65 36 65 44 44 1 1 1 1 1 1 13568 16046 1897 15847 24557 31827 31827 1 SESLVVCDVAEDLVEK Acetyl (N-term) 1832.8714 0.87136018 1365 P60983 GMFB Glia maturation factor beta yes yes 1 0 0 0 0 2 0 1 87.781 87.781 3 0.031343 27839 TMT1-1 42.338 22.597 7.3659 6.6377 18.759 6.3322 10.676 15.685 7 7 18 7 11 15 1 1 1 1 1 1 4663.5 16047 1365 15848 24558 31828 31828 1 SESPKEPEQLR Unmodified 1298.6466 0.64664404 601 P09651-3;P09651-2;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 1 3 0.816 1 1 1 33.153 33.153 3 2.0135E-06 8624 TMT1-2 127.83 92.653 1358.8 2056 1438.4 1390.8 1514.5 1920.4 1284 2041 1507 1377 1572 1842 5 5 5 5 5 5 134310 16048 601 15849 24559;24560;24561 31829;31830;31831;31832;31833 31832 5 SESSPEAYIR Unmodified 1137.5302 0.53021729 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 3 0 1 40.431 40.431 2 0.00026057 11502 TMT1-2 126.24 76.82 46.622 57.728 50.247 27.757 50.253 52.932 44 58 51 29 51 51 1 1 1 1 1 1 10683 16049 750 15850 24562 31834 31834 1 SESVPPVTDWAWYK Unmodified 1663.7882 0.7882229 1024 P35613-2;P35613;P35613-3;P35613-4 BSG Basigin yes no 0 0 0 0 0 7 0 1 71.267 71.267 3 0.00011617 21809 TMT1-6 84.566 62.368 216.03 274.96 247.5 218.76 253.36 279.52 204 276 254 218 261 269 3 3 3 3 3 3 35177 16050 1024 15851 24563 31835;31836;31837 31835 3 SETAPAAPAAAPPAEK Acetyl (Protein N-term) 1519.7518 0.75183739 745 P16403 HIST1H1C Histone H1.2 yes yes 0 1 0 0 0 2 0 1 46.437 46.437 2 8.9923E-07 13405 TMT1-1 59.227 8.3305 15.686 29.06 44.173 36.195 27.637 30.125 15 29 44 36 29 29 1 1 1 1 1 1 64550 16051 745 15852 24564 31838 31838 1 SETAPAAPAAPAPAEK Acetyl (Protein N-term) 1519.7518 0.75183739 630 P10412 HIST1H1E Histone H1.4 yes yes 0 1 0 0 0 2 0 1 46.437 46.437 2 7.1702E-29 13507 TMT1-1 95.417 18.139 99.436 161.82 102.48 117.73 157.05 142.63 94 160 109 116 160 138 1 1 1 1 1 1 64550 16052 630 15853 24565 31839 31839 1 SETAPAAPAAPAPAEK Unmodified 1477.7413 0.7412727 630 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 0 0 4 0 1 40.762 40.762 2 1.0767E-06 10641 TMT1-3 102.97 0 7.3027 15.096 22.22 14.394 35.968 29.888 7 15 22 15 36 29 1 1 1 1 1 1 4342.8 16053 630 15853 24566 31840 31840 1 SETAPAETATPAPVEK Acetyl (N-term) 1639.7941 0.79409613 743 P16401 HIST1H1B Histone H1.5 yes yes 1 0 0 0 0 2.5 0.5 1 1 48.552 48.552 3 0.00073883 14585 TMT1-2 59.862 48.601 84.417 170.41 94.741 111.64 98.218 97.401 80 167 102 109 102 94 1 1 1 1 1 1 102540 16054 743 15854 24567;24568 31841;31842 31842 2 SETAPAETATPAPVEK Unmodified 1597.7835 0.78353145 743 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 0 3 0 1 42.478 42.478 3 1.4254E-06 12284 TMT1-2 94.007 82.393 46.488 57.356 73.056 50.601 41.874 53.171 44 58 73 51 44 51 1 1 1 1 1 1 8889.2 16055 743 15854 24569 31843 31843 1 SETAPLAPTIPAPAEK Acetyl (Protein N-term) 1633.8563 0.85630246 744 P16402 HIST1H1D Histone H1.3 yes yes 0 1 0 0 0 3.5 0.5 1 1 64.844 64.844 3 1.2904E-08 20114 TMT1-3 58.09 44.813 1033.7 1187.8 1090 1017.4 1205.9 1597.6 975 1199 1120 1011 1250 1531 3 3 3 3 3 3 291280 16056 744 15855 24570;24571 31844;31845;31846 31846 3 SETDLLDIR Unmodified 1060.5401 0.5400537 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 2.5 0.5 1 1 55.994 55.994 2 0.016566 17551 TMT1-2 79.906 26.74 299.59 415.81 332 235.76 301.94 395.4 283 415 341 239 312 379 2 2 2 2 2 2 64898 16057 1234 15856 24572;24573 31847;31848 31848 2 SETDTSLIR Unmodified 1020.5088 0.50875357 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 2.5 0.5 1 1 39.006 39.006 2 7.9206E-08 10824 TMT1-2 138.78 52.69 61.503 80.053 55.025 58.773 71.348 67.254 58 80 58 58 73 65 1 1 1 1 1 1 11473 16058 1068 15857 24574;24575 31849;31850 31850 2 SETITEEELVGLMNK Unmodified 1691.8288 0.82876708 735 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 73.102 73.102 3 7.3032E-11 23397 TMT1-3 124.51 104.41 146.29 141.4 180.19 168.61 169.12 149.74 138 145 182 167 174 145 2 2 2 2 2 2 25320 16059 735 15858 24576;24577 31851;31852 31851 2 SETSGPQIK Unmodified 945.47673 0.47672516 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 5 0 1 35.555 35.555 3 0.0023981 8308 TMT1-4 85.676 50.576 99.524 130.77 114 71.128 99.275 120.82 94 131 116 73 102 116 1 1 1 1 1 1 9550.5 16060 2956 15859 24578 31853 31853 1 SETSGSFEDALLAIVK Unmodified 1665.8461 0.84613171 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 6 0 1 82.798 82.798 3 3.2392E-16 26994 TMT1-5 137.81 118.73 92.128 139.16 87.572 119.47 111.71 120.47 87 138 94 116 116 116 2 2 2 2 2 2 23555 16061 598 15860 24579 31854;31855 31854 2 SETVICSSR Acetyl (Protein N-term) 1079.4917 0.4917233 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 1 0 0 0 2 0 1 38.187 38.187 2 6.6346E-10 10282 TMT1-1 114.28 77.187 61.756 34.348 51.173 36.735 34.889 61.898 58 37 51 37 37 59 2 2 2 2 2 2 30191 16062 1225 15861 24580 31856;31857 31857 2 SETYKYLYGR Unmodified 1278.6245 0.62445203 1851 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 1 7 0 1 43.992 43.992 3 0.00079262 11132 TMT1-6 99.855 73.257 161.55 109.75 166.47 153.11 165.1 287.37 152 116 167 152 174 274 1 1 1 1 1 1 13702 16063 1851 15862 24581 31858 31858 1 SEVAAENHLR Unmodified 1124.5574 0.5574351 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 3 0 1 27.442 27.442 3 1.7005E-05 6326 TMT1-2 97.813 82.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16064 1780 15863 24582 31859 31859 1 SEVATLTAAGK Unmodified 1046.5608 0.56078914 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 5 0 1 46.558 46.558 3 0.00040794 12625 TMT1-4 94.616 47.057 91.553 161.3 165.48 113.83 164.31 149.88 87 160 167 116 167 145 1 1 1 1 1 1 9809.8 16065 1038 15864 24583 31860 31860 1 SEVDMLK Unmodified 820.40005 0.40005474 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 4 0 1 48.119 48.119 2 0.0089004 13563 TMT1-3 114.6 40.267 211.2 583.69 256.89 296.98 423.29 526.25 201 566 283 293 435 505 1 1 1 1 1 1 40487 16066 534 15865 24584 31861 31861 1 SEVELAAALSDKR Unmodified 1387.7307 0.73070802 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 1 5 0 1 53.493 53.493 3 1.1905E-13 15382 TMT1-4 124.45 82.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16067 1577 15866 24585 31862 31862 1 SEVLGWDPDSLADYFK Unmodified 1840.8519 0.85194536 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 86.544 86.544 2;3 1.2807E-17 28429 TMT1-5 147.71 135.32 100.46 102.26 160.83 53.913 133.39 125.18 95 105 157 59 134 121 4 4 4 3 4 4 19025 16068 1669 15867 24586;24587 31863;31864;31865;31866 31863 4 SEVLLVSEDGK Unmodified 1174.6081 0.60813326 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 4 0 2 54.285 54.285 2;3 2.0358E-09 15942 TMT1-3 166.55 114.82 199.03 300.33 198.75 236.27 290.52 300.85 188 298 211 232 298 290 2 2 2 2 2 2 22792 16069 2884 15868 24588;24589 31867;31868;31869 31867 3 SEVSSDEDIQFR Unmodified 1410.6263 0.62630252 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 2 0 1 45.69 45.69 2 2.962E-10 13224 TMT1-1 160.91 149.82 54.175 49.776 49.961 44.041 57.09 45.275 51 51 51 44 58 44 1 1 1 1 1 1 12011 16070 1076 15869 24590 31870 31870 1 SEVSSGSAR Unmodified 878.40937 0.40937388 398 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 0 2 0 1 20.11 20.11 2 0.00029811 3455 TMT1-1 96.311 52.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16071 398 15870 24591 31871 31871 1 SEWGSLLEELVAEGK Unmodified 1645.8199 0.81991695 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 6 0.816 1 1 1 87.175 87.175 3 2.9855E-17 28748 TMT1-5 145.43 116.45 254.61 213.71 127.93 163.37 206.7 189.18 239 219 138 160 211 183 4 4 4 4 4 4 40192 16072 765 15871 24592;24593;24594 31872;31873;31874;31875 31874 4 SEWIYDTPVSPGK Unmodified 1477.7089 0.70890994 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 6 0 1 60.838 60.838 3 0.0001261 18413 TMT1-5 90.926 69.053 77.514 78.719 70.227 81.82 76.262 106.56 73 80 73 80 80 102 1 1 1 1 1 1 10722 16073 2707 15872 24595 31876 31876 1 SEWSDLLSDLQK Unmodified 1419.6882 0.6881745 560 P08237-3;P08237;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 0 6 0 1 77.409 77.409 3 0.0026422 24935 TMT1-5 71.085 57.422 54.065 73.215 48.556 44.006 63.358 76.01 51 73 51 44 65 73 1 1 1 1 1 1 7440.4 16074 560 15873 24596 31877 31877 1 SEYDSLLPDVYEWPESASSPPVITE Unmodified 2809.2858 0.28580266 859 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 0 4 0.816 1 1 1 93.198 93.198 3 0.00033381 30733 TMT1-3 52.061 49.838 15.891 19.749 27.503 10.01 27.497 8.3051 15 20 27 10 27 8 3 4 4 3 4 2 16575 16075 859 15874 24597;24598;24599 31878;31879;31880;31881 31880 4 SEYIETASGNK Unmodified 1197.5513 0.55134667 2533 Q9BTE1;Q9BTE1-3;Q9BTE1-2 DCTN5 Dynactin subunit 5 yes no 0 0 0 0 0 4 0 1 41.923 41.923 3 4.4519E-06 11070 TMT1-3 118.23 108.8 154.13 158 110.71 101.92 157.52 150.07 145 160 116 102 160 145 1 1 1 1 1 1 12158 16076 2533 15875 24600 31882 31882 1 SFADINLYR Unmodified 1097.5506 0.55055881 412 P01111 NRAS GTPase NRas yes yes 0 0 0 0 0 7 0 1 58.476 58.476 2 0.00010541 16873 TMT1-6 117.89 72.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16077 412 15876 24601 31883 31883 1 SFADLQHKPLLVDLTVEEGQR Unmodified 2394.2543 0.25432379 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase yes no 0 0 0 0 1 7 0 1 64.774 64.774 4 1.0385E-13 19342 TMT1-6 106.69 92.676 84.761 85.027 109.23 71.372 101.39 58.935 80 87 109 73 102 58 1 1 1 1 1 1 9471.2 16078 2892 15877 24602 31884 31884 1 SFAGNLNTYK Unmodified 1113.5455 0.54547343 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 8 0 1 50.218 50.218 2 0.0089393 13768 TMT1-7 85.813 56.465 30.561 51.368 49.965 44.459 34.842 22.458 29 51 51 44 36 22 1 1 1 1 1 1 36790 16079 1559 15878 24603 31885 31885 1 SFANTLVDVCAYAGSGNVLK Unmodified 2085.0201 0.0200901 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 8 0 1 73.659 73.659 3 1.0349E-05 22942 TMT1-7 76.015 60.073 46.612 50.146 58.297 27.282 50.018 60.401 44 51 58 29 51 58 1 1 1 1 1 1 12008 16080 1683 15879 24604 31886 31886 1 SFAVGMFK Unmodified 885.44186 0.44185998 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 61.81 61.81 2 0.0073468 16454 TMT1-8 112.17 52.966 153.29 291.64 139.29 154.86 158.28 270.51 145 286 152 152 167 258 1 1 1 1 1 1 17058 16081 1194 15880 24605 31887 31887 1 SFDGFSSAQK Unmodified 1072.4825 0.48253882 3040 Q9Y5Z4;Q9Y5Z4-2 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 48.855 48.855 2;3 7.6356E-05 13646 TMT1-5 119.68 55.864 154.14 240.23 219.43 198.16 158.82 196.94 146 239 225 196 167 189 2 2 2 2 2 2 13858 16082 3040 15881 24606;24607 31888;31889 31888 2 SFDLLVK Unmodified 820.46945 0.46945494 2678 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 0 8 0 1 63.413 63.413 2 0.011293 18925 TMT1-7 104.45 37.766 215.26 526.61 345.26 308.49 344.82 511.43 205 514 362 307 360 489 1 1 1 1 1 1 34616 16083 2678 15882 24608 31890 31890 1 SFDPFTEVIVDGIVANALR Unmodified 2062.0735 0.073505879 1562 Q01970-2;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 0 0 0 7 0 1 100.22 100.22 2 0.0015963 32621 TMT1-6 62.14 38.154 0 0 4.328 0 0 7.462 0 0 4 0 0 7 0 0 1 0 0 1 568.23 16084 1562 15883 24609 31891 31891 1 SFENISK Unmodified 823.40758 0.40758296 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 6 0 1 44.711 44.711 2 0.0067233 12045 TMT1-5 131.03 83.116 626.5 1039.1 1125.6 757.58 1016.9 1355.7 595 1034 1132 772 1050 1299 1 1 1 1 1 1 95273 16085 1372 15884 24610 31892 31892 1 SFENSLGINVPR Unmodified 1331.6834 0.68336389 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 6.5 0.5 1 1 57.605 57.605 2 3.121E-08 16545 TMT1-6 136.96 100.39 91.956 153.79 104.05 94.137 127.77 143.46 87 152 109 94 131 138 2 2 2 2 2 2 26014 16086 1910 15885 24611;24612 31893;31894 31894 2 SFESTVGQGSDTYIYIFR Unmodified 2068.9742 0.97418577 814 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 0 6 0 1 72.13 72.13 2 5.6216E-10 22869 TMT1-5 87.831 64.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16087 814 15886 24613 31895 31895 1 SFEVNLR Unmodified 863.45012 0.45011648 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 6 0 1 48.189 48.189 2 0.0083257 13412 TMT1-5 117.18 51.09 146.79 150.36 88.04 87.706 113.68 105.49 138 152 94 87 116 102 1 1 1 1 1 1 11546 16088 2098 15887 24614 31896 31896 1 SFEWLSQMR Unmodified 1182.5492 0.5491786 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 65.002 65.002 2 0.0050875 19506 TMT1-7 98.009 78.222 61.152 94.188 101.95 55.126 116.54 65.965 58 94 102 58 116 65 1 1 1 1 1 1 6138.8 16089 1763 15888 24615 31897 31897 1 SFFGPLELVEK Unmodified 1264.6703 0.67033959 2456 Q96T51;Q96T51-2;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 77.801 77.801 3 0.013692 24357 TMT1-6 58.172 29.429 92.571 69.154 72.494 42.12 87.82 66.784 87 72 73 44 88 65 2 2 2 2 2 2 6186 16090 2456 15889 24616 31898;31899 31898 2 SFFLQPGEQLEQGIQDVYVLSEQQGLLLR Unmodified 3333.7245 0.72450701 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 7 0 2 101.4 101.4 3;4 3.4781E-10 32948 TMT1-6 78.921 68.405 7.3717 19.544 10.452 11.125 14.644 23.034 7 19 11 11 15 22 1 2 1 1 1 2 6786.8 16091 1796 15890 24617;24618 31900;31901 31900 2 SFFSEIISSISDVK Unmodified 1557.7926 0.79263957 1472 P63151;P63151-2;Q00005-6;Q00005;Q00005-2;Q00005-3;Q66LE6;Q00005-4;Q00005-5;Q00005-7 PPP2R2A;PPP2R2B;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 0 0 0 0 0 8 0 1 91.393 91.393 3 0.00067871 29628 TMT1-7 74.678 53.725 31.483 65.986 62.884 74.708 70.872 59.806 30 65 65 73 73 58 2 2 2 2 2 2 8259 16092 1472 15891 24619 31902;31903 31903 2 SFFTDDDKQDHLSWEWNLSIK Unmodified 2610.2027 0.20268215 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 1 7.33 0.471 2 1 72.635 72.635 4;5 8.2645E-24 22476 TMT1-7 131.18 114.78 778.78 1181.7 1018.6 861.6 1055.7 1093.4 737 1176 1046 862 1083 1054 4 4 4 4 4 4 202010 16093 1269 15892 24620;24621;24622 31904;31905;31906;31907 31906 4 SFGAEEHEVCR Unmodified 1319.5564 0.55644882 1579 Q03519;Q03519-2 TAP2 Antigen peptide transporter 2 yes no 0 0 0 0 0 2.5 0.5 1 1 33.097 33.097 3 4.7623E-07 8438 TMT1-2 103.43 88.557 68.466 109.31 122.33 86.497 69.267 90.765 65 109 123 87 73 87 1 1 1 1 1 1 10158 16094 1579 15893 24623;24624 31908;31909 31909 2 SFGGGTGSGFTSLLMER Unmodified 1702.7985 0.79847001 14 A6NHL2-2;A6NHL2 TUBAL3 Tubulin alpha chain-like 3 yes no 0 0 0 0 0 8 0 1 68.365 68.365 3 1.8086E-24 20825 TMT1-7 145.94 129.19 38.189 34.992 44.063 28.126 50.236 52.932 36 36 44 29 51 51 1 1 1 1 1 1 9930 16095 14 15894 24625 31910 31910 1 SFGSRTTK Phospho (STY) 962.42226 0.42226055 1576 Q03164-2;Q03164;Q03164-3 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 1 1 9 0 1 79.4 79.4 2 0.033748 23342 TMT1-8 44.135 25.824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16096 1576 15895 24626 31911 31911 5 1 SFIKDYPVVSIEDPFDQDDWGAWQK Unmodified 2984.3869 0.38685411 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 6.5 0.5 2 2 83.056 83.056 3;4;5 1.9156E-38 27086 TMT1-5 148.95 136.31 577.3 829.6 554.62 478.95 613.42 899.26 545 825 581 479 637 860 7 7 7 7 7 7 287480 16097 514 15896 24627;24628;24629;24630 31912;31913;31914;31915;31916;31917;31918 31912 7 SFLDDPIWR Unmodified 1147.5662 0.56620887 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 6 0 1 68.823 68.823 2 0.003611 21528 TMT1-5 101.25 66.153 107.98 161.12 110.06 117.57 141.1 150.54 102 160 116 116 145 145 2 2 2 2 2 2 21969 16098 2079 15897 24631 31919;31920 31919 2 SFLDGIYK Unmodified 941.48583 0.48583328 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 7 0 1 63.918 63.918 2 0.040401 19033 TMT1-6 77.282 40.262 115.78 98.814 114.08 110.5 97.978 105.94 109 102 116 109 102 102 1 1 1 1 1 1 8444.5 16099 2596 15898 24632 31921 31921 1 SFLDSGYR Unmodified 943.43995 0.43994572 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.75 2.28 1 1 1 1 47.99 47.99 2 0.0019439 13209 TMT1-5 139.31 92.943 4054.3 5627.7 4890.5 3671.2 4327.3 5870.6 3832 5623 5002 3700 4491 5623 5 5 5 5 5 5 741270 16100 776 15899 24633;24634;24635;24636 31922;31923;31924;31925;31926 31925 5 SFLEDIR Unmodified 878.44978 0.44978213 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 5 0 1 55.268 55.268 2 0.018963 16054 TMT1-4 98.418 11.906 115.49 160.61 110.08 117.14 164.41 142.42 109 160 116 116 167 138 1 1 1 1 1 1 26357 16101 1260 15900 24637 31927 31927 1 SFLEDIRK Unmodified 1006.5447 0.54474515 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 1 7 0 1 51.211 51.211 3 0.0019023 13951 TMT1-6 110.22 56.535 223.99 252.11 372.82 204.27 219.59 398.81 212 257 368 211 232 380 1 1 1 1 1 1 158840 16102 1260 15901 24638 31928 31928 1 SFLEEVLASGLHSR Unmodified 1543.7995 0.79945628 2734 Q9NRW7 VPS45 Vacuolar protein sorting-associated protein 45 yes yes 0 0 0 0 0 7 0 1 71.097 71.097 3 0.0080372 21831 TMT1-6 54.501 31.275 38.166 51.115 34.409 28.82 43.938 22.198 36 51 36 29 44 22 1 1 1 1 1 1 8956.8 16103 2734 15902 24639 31929 31929 1 SFLESIDDALAEK Unmodified 1436.7035 0.70349021 1871 Q15750-2;Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes no 0 0 0 0 0 5 0 1 79.839 79.839 3 2.4926E-08 25721 TMT1-4 120.14 75.52 46.322 73.083 87.66 41.663 64.016 60.001 44 73 87 44 65 58 1 1 1 1 1 1 7584 16104 1871 15903 24640 31930 31930 1 SFLGINK Unmodified 777.43849 0.43848916 1165 P48736 PIK3CG Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform yes yes 0 0 0 0 0 9 0 1 54.327 54.327 2 0.02712 13777 TMT1-8 91.041 12.014 84.267 162.44 126.69 109.63 104.03 144.14 80 160 131 109 109 138 1 1 1 1 1 1 79767 16105 1165 15904 24641 31931 31931 1 SFLGYASFK Unmodified 1018.5124 0.51238239 141 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase yes yes 0 0 0 0 0 9 0 1 63.834 63.834 2 0.0054068 17240 TMT1-8 83.647 41.668 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16106 141 15905 24642 31932 31932 1 SFLLDLLNATGK Unmodified 1290.7184 0.71835242 82 O00571-2;O00571 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 0 9 0 2 86.863 86.863 2;3 8.7414E-07 26284 TMT1-8 118.87 64.258 46.432 49.644 89.082 41.295 79.078 78.759 44 51 87 44 80 76 2 2 2 2 2 2 21214 16107 82 15906 24643;24644 31933;31934 31934 2 SFLSQGQVLK Unmodified 1105.6132 0.61315906 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 8.67 0.471 1 2 55.84 55.84 2;3 4.515E-12 14019 TMT1-8 173.37 114.02 638.44 763.84 613.87 517.84 566.46 844.1 602 768 634 517 592 807 4 4 4 4 4 4 75356 16108 1148 15907 24645;24646;24647 31935;31936;31937;31938 31936 4 SFLYEIVSNK Unmodified 1198.6234 0.6233894 3006 Q9Y3Z3;Q9Y3Z3-4 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 8 0 1 70.594 70.594 2 1.2405E-06 21722 TMT1-7 130.41 98.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16109 3006 15908 24648 31939 31939 1 SFLYEIVSNKR Unmodified 1354.7245 0.72450043 3006 Q9Y3Z3;Q9Y3Z3-4 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 1 9 0 1 61.162 61.162 3 1.19E-06 16240 TMT1-8 126.66 88.355 378.58 603.68 422.61 368.77 439.74 530.05 358 598 441 368 454 509 2 2 2 2 2 2 68233 16110 3006 15909 24649 31940;31941 31941 2 SFMILIFTR Unmodified 1126.6209 0.62088698 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 9 0 1 80.909 80.909 2 0.047598 23897 TMT1-8 63.076 0.73704 37.962 74.294 48.963 35.24 63.248 90.937 36 73 51 36 65 87 1 1 1 1 1 1 7214.4 16111 2753 15910 24650 31942 31942 1 SFNLSALEK Unmodified 1007.5288 0.52876073 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 7 0 1 61.274 61.274 2 0.00024445 17946 TMT1-6 143.89 84.685 115.08 159.46 180.64 113.5 133.96 150.75 109 160 181 116 138 145 1 1 1 1 1 1 25616 16112 692 15911 24651 31943 31943 1 SFPDFPTPGVVFR Unmodified 1464.7402 0.74015049 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 0 8.33 0.471 2 1 73.152 73.152 2;3 2.5576E-37 22786 TMT1-7 216.26 186.79 214.75 341.36 226.55 235.3 253.94 270.98 203 338 239 232 262 261 3 3 3 3 3 3 114840 16113 541 15912 24652;24653;24654 31944;31945;31946 31945 3 SFPPDAILFYIPQIVQALR Unmodified 2187.2092 0.2092115 1097 P42356;P42356-2 PI4KA Phosphatidylinositol 4-kinase alpha yes no 0 0 0 0 0 9 0 1 106.07 106.07 3 7.9022E-11 33155 TMT1-8 90.348 69.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16114 1097 15913 24655 31947 31947 1 SFQDYLGK Unmodified 956.46035 0.46034682 1045 P36915 GNL1 Guanine nucleotide-binding protein-like 1 yes yes 0 0 0 0 0 7 0 1 57.117 57.117 2 0.00084066 16336 TMT1-6 95.502 64.932 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16115 1045 15914 24656 31948 31948 1 SFQNYIR Unmodified 926.46102 0.46101552 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 7 0 1 46.06 46.06 2 0.0011192 11963 TMT1-6 96.19 48.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16116 1786 15915 24657 31949 31949 1 SFQTGLFTAAR Unmodified 1197.6142 0.6142217 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 9 0 1 56.023 56.023 2 2.1139E-10 14121 TMT1-8 153.1 82.577 99.641 146.2 81.281 80.333 120.29 136.21 94 145 87 80 123 131 1 1 1 1 1 1 26377 16117 529 15916 24658 31950 31950 1 SFSEDAVTDSSGSGTLPR Unmodified 1811.8174 0.81735077 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 2.5 0.5 1 1 49.799 49.799 3 8.9362E-25 15140 TMT1-2 143.67 122.28 46.582 57.616 57.109 43.9 41.925 60.632 44 58 58 44 44 58 2 2 2 2 2 2 21574 16118 1916 15917 24659;24660 31951;31952 31952 2 SFSEFGK Unmodified 800.37047 0.37046918 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 6.5 0.5 1 1 50.203 50.203 2 0.0071718 14044 TMT1-5 78.178 54.622 138.6 220.22 142.95 170.69 176.72 199.63 131 218 152 167 183 192 1 1 1 1 1 1 35011 16119 170 15918 24661;24662 31953;31954 31953 2 SFSIIGDFQNGK Unmodified 1311.6459 0.64591575 471 P04275;P04275-2 VWF von Willebrand factor;von Willebrand antigen 2 yes no 0 0 0 0 0 8 0 1 65.675 65.675 3 0.0086526 19779 TMT1-7 41.218 23.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16120 471 15919 24663 31955 31955 1 SFSLLQEAIIPYIPTLITQLTQK Unmodified 2616.4778 0.47784137 1310 P55060-3;P55060;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 0 9 0 1 108.96 108.96 3 2.8626E-07 33854 TMT1-8 69.98 60.933 4.25 3.9068 3.7471 7.2963 6.9868 0 4 4 4 7 7 0 1 1 1 1 1 0 980.92 16121 1310 15920 24664 31956 31956 1 SFSTALYGESDL Unmodified 1288.5823 0.58231244 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4.5 0.5 1 1 70.564 70.564 2 2.4807E-25 22307 TMT1-3 200.88 163.85 229.1 428.05 266.24 294.81 392.74 322.45 217 421 283 291 399 313 4 4 4 4 4 4 133830 16122 195 15921 24665;24666 31957;31958;31959;31960 31957 4 SFTFVVFK Unmodified 973.5273 0.52730417 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 9 0 1 71.616 71.616 2 0.0070386 20260 TMT1-8 119.17 75.038 192.2 200.22 168.08 161.73 166.76 227.63 181 203 174 160 174 218 2 2 2 2 2 2 21674 16123 1219 15922 24667 31961;31962 31961 2 SFTIECR Unmodified 911.4171 0.41710179 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 0 5 0 1 42.463 42.463 2 0.0086985 10991 TMT1-4 115.46 95.756 130.89 120.69 80.893 119.86 112.21 105.53 123 123 87 116 116 102 1 1 1 1 1 1 16243 16124 683 15923 24668 31963 31963 1 SFTIKPVGFK Unmodified 1122.6437 0.64373091 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 9 0 1 56.295 56.295 3 8.9241E-05 14217 TMT1-8 112.15 87.804 6622 7558.9 7581.2 5788.1 7204.1 9336.2 6249 7643 7695 5833 7448 8951 2 2 2 2 2 2 481790 16125 484 15924 24669 31964;31965 31964 2 SFTNQIIL Unmodified 934.51238 0.51238239 2420 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 0 7 0 1 71.779 71.779 2 0.025161 22092 TMT1-6 85.265 68.301 30.804 28.302 28.553 21.822 27.748 46.112 29 29 29 22 29 44 1 1 1 1 1 1 7827.2 16126 2420 15925 24670 31966 31966 1 SFVEFILEPLYK Unmodified 1483.7963 0.79626839 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 8 0 1 92.053 92.053 3 0.00057694 29759 TMT1-7 83.182 55.701 30.854 35.996 13.628 6.4262 21.933 22.826 29 36 15 7 22 22 1 1 1 1 1 1 9645.5 16127 1816 15926 24671 31967 31967 1 SFVFILEPK Unmodified 1078.6063 0.60628277 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 9 0 1 73.588 73.588 2 0.0012647 21053 TMT1-8 125.82 80.505 77.132 132.7 88.689 104.79 74.949 114.06 73 131 94 102 80 109 1 1 1 1 1 1 23565 16128 750 15927 24672 31968 31968 1 SFVLNLGK Unmodified 876.5069 0.50690308 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 0 5 4 1 1 62.843 62.843 2 0.0071385 16737 TMT1-8 116.9 66.784 1726.1 2889 1933.5 1622.8 1965.2 2647.3 1633 2855 2022 1624 2037 2536 4 4 4 4 4 4 430070 16129 586 15928 24673;24674 31969;31970;31971;31972 31971 4 SFYPEEVSSMVLTK Unmodified 1615.7804 0.78036033 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 5.83 2.27 1 2 2 1 71.23 71.23 2;3 9.6522E-27 21800 TMT1-6 181.66 149.06 750.09 984.44 778.73 660.69 584.52 1333.9 708 985 805 657 629 1267 7 7 7 7 6 7 286540 16130 641 15929 24675;24676;24677;24678;24679;24680 31973;31974;31975;31976;31977;31978;31979 31978 7 SGAGVISVPSK 2 Phospho (STY) 1160.488 0.48797065 19 A8MWY0-2;A8MWY0-3;A8MWY0 KIAA1324L UPF0577 protein KIAA1324-like yes no 0 0 0 2 0 9 0 1 51.629 51.629 3 0.022862 12428 TMT1-8 42.21 6.8621 99.538 169.66 78.804 104.37 128.62 105.06 94 167 87 102 131 102 1 1 1 1 1 1 12178 16131 19 15930 24681 31980 31980 0;1 1 SGAILPKPVK Unmodified 1008.6332 0.63316622 2653 Q9H4I9 SMDT1 Essential MCU regulator, mitochondrial yes yes 0 0 0 0 1 9 0 1 45.61 45.61 3 0.0022809 10048 TMT1-8 78.655 46.721 153.93 141.26 157.65 139.67 94.181 177.47 145 145 160 138 102 169 1 1 1 1 1 1 4622.6 16132 2653 15931 24682 31981 31981 1 SGALDVLQMKEEDVLK Acetyl (N-term) 1815.9288 0.92881548 579 P08865 RPSA 40S ribosomal protein SA yes yes 1 0 0 0 1 4 0 1 77.283 77.283 3 0.00011158 24967 TMT1-3 60.209 34.343 177.74 177.97 93.475 119.3 101.71 198.57 167 180 102 116 109 189 1 1 1 1 1 1 20672 16133 579 15932 24683 31982 31982 1 SGALLACGIVNSGVR Unmodified 1472.7769 0.7769467 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 9 0 1 55.997 55.997 3 0.0044437 14135 TMT1-8 52.522 30.477 77.269 70.482 118.44 55.178 61.525 114.44 73 73 116 58 65 109 1 1 1 1 1 1 5520.5 16134 1683 15933 24684 31983 31983 1 SGAPWFK Unmodified 791.39662 0.39662435 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 9 0 1 53.228 53.228 2 0.016129 13037 TMT1-8 97.068 50.502 453.17 441.69 646.46 435.56 479.2 662.17 428 454 642 442 499 634 2 2 2 2 2 2 54453 16135 1635 15934 24685 31984;31985 31984 2 SGATAGAAGGR Unmodified 874.42569 0.42569264 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 3 0 1 19.066 19.066 2 0.0026972 3302 TMT1-2 91.658 48.412 12.76 9.5887 11.421 20.729 23.919 6.7795 12 10 12 20 24 7 1 1 1 1 1 1 2558.6 16136 1233 15935 24686 31986 31986 1 SGAVEETFR Unmodified 994.47197 0.47197413 2057 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 0 0 3 0 1 38.268 38.268 2 0.045233 10614 TMT1-2 67.897 26.91 77.455 102.3 60.137 82.258 84.927 66.867 73 102 65 80 87 65 1 1 1 1 1 1 8805.1 16137 2057 15936 24687 31987 31987 1 SGAYLIPLLER Unmodified 1230.6972 0.69722304 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 0 7 0 1 69.467 69.467 2 0.0020957 21166 TMT1-6 94.66 61.109 61.156 125.5 74.742 89.351 68.33 114.24 58 123 80 87 73 109 1 1 1 1 1 1 18512 16138 895 15937 24688 31988 31988 1 SGDAAIVDMVPGKPMCVESFSDYPPLGR Unmodified 2994.3925 0.39254989 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 6 0 1 72.784 72.784 4 1.6609E-05 23095 TMT1-5 58.26 50.9 92.067 138.98 98.058 78.628 157.79 173.52 87 138 102 80 160 167 2 2 2 2 2 2 20508 16139 1490 15938 24689 31989;31990 31989 2 SGDAPLTVNELGTAYVSATTGAVATALGLNALTK Unmodified 3246.6984 0.69835184 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 9 0 2 99.868 99.868 3;4 2.1314E-11 30961 TMT1-8 68.708 51.771 39.197 74.445 34.918 52.874 64.51 68.515 37 73 36 51 66 66 3 4 2 3 3 4 12245 16140 2664 15939 24690;24691 31991;31992;31993;31994 31992 4 SGDGEGTPVEHVR Unmodified 1338.6164 0.61640654 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 2 0 1 26.943 26.943 3 0.00036675 5786 TMT1-1 82.069 70.011 23.153 28.424 52.109 28.075 27.46 46.12 22 29 51 29 29 44 1 1 1 1 1 1 7671.3 16141 2079 15940 24692 31995 31995 1 SGDPGPGPSHPAQPK Unmodified 1427.6793 0.67934115 2122 Q86WR7 PROSER2 Proline and serine-rich protein 2 yes yes 0 0 0 0 0 4 0 1 28.17 28.17 3 0.0003985 5684 TMT1-3 75.669 63.977 23.291 28.808 28.566 21.688 34.827 53.372 22 29 29 22 36 51 1 1 1 1 1 1 2743.4 16142 2122 15941 24693 31996 31996 1 SGDTLLLLHHGDFSAEEVFHR Unmodified 2379.1608 0.16075776 2535 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 0 5 0 1 57.475 57.475 5 0.0002073 16930 TMT1-4 55.972 45.776 85.046 85.818 60.74 90.073 74.307 152.45 80 87 65 87 80 145 1 1 1 1 1 1 11356 16143 2535 15942 24694 31997 31997 1 SGDTVLYDMEVGSALLTLESR Unmodified 2255.0991 0.099128282 2729 Q9NRL3-3;Q9NRL3 STRN4 Striatin-4 yes no 0 0 0 0 0 5 0 1 88.85 88.85 3 0.00017426 29200 TMT1-4 61.345 51.148 16.003 0 15.478 15.063 21.792 15.368 15 0 15 15 22 15 1 0 1 1 1 1 2123.5 16144 2729 15943 24695 31998 31998 1 SGEDEQQEQTIAEDLVVTK Acetyl (N-term) 2160.007 0.007002036 2943 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 1 0 0 0 0 2 0 1 72.815 72.815 3 5.1786E-08 23641 TMT1-1 46.027 30.084 69.893 71.373 94.909 48.593 79.402 59.562 66 73 94 51 80 58 1 1 1 1 1 1 31145 16145 2943 15944 24696 31999 31999 1 SGEDPLVK Unmodified 843.4338 0.43379771 1403 P61952;P63211 GNG11;GNGT1 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11;Guanine nucleotide-binding protein G(T) subunit gamma-T1 yes no 0 0 0 0 0 4 0 1 42.608 42.608 3 0.025236 11398 TMT1-3 58.981 25.86 115.73 137.54 88.98 87.384 127.83 150.92 109 138 94 87 131 145 1 1 1 1 1 1 14582 16146 1403 15945 24697 32000 32000 1 SGEEDEEILFK Unmodified 1294.5929 0.59287713 1204 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 0 2 0 1 59.112 59.112 3 0.00042267 18510 TMT1-1 67.022 54.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16147 1204 15946 24698 32001 32001 1 SGEEDFESLASQFSDCSSAK Unmodified 2179.8852 0.88517234 1715 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 0 0 4 0 1 69.178 69.178 3 9.0845E-10 21795 TMT1-3 92.31 82.905 46.899 19.645 35.908 36.575 33.629 68.33 44 22 36 36 36 65 1 1 1 1 1 1 7906.3 16148 1715 15947 24699 32002 32002 1 SGEENPASKPTPVQDVQGDGR Acetyl (Protein N-term) 2209.0247 0.024717786 1828 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 1 0 0 1 2 0 1 43.346 43.346 3 4.1021E-09 12288 TMT1-1 47.392 44.815 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16149 1828 15948 24700 32003 32003 1 SGEHDFGAAFDGDGDR Unmodified 1651.6499 0.64989151 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 2 0 1 42.188 42.188 3 2.1559E-05 11784 TMT1-1 84.859 78.696 84.577 115.81 114.2 88.45 49.307 129.71 80 116 116 88 51 123 2 2 2 2 1 2 16544 16150 1043 15949 24701 32004;32005 32004 2 SGELQGGPDDNLIEGGGTK Unmodified 1842.8595 0.85954994 2359 Q96A65 EXOC4 Exocyst complex component 4 yes yes 0 0 0 0 0 3 0 1 52.291 52.291 3 0.00036333 16186 TMT1-2 61.181 40.242 30.849 28.426 20.951 22.27 28.02 37.576 29 29 22 22 29 36 1 1 1 1 1 1 5251.4 16151 2359 15950 24702 32006 32006 1 SGEPQTFTLK Unmodified 1106.5608 0.56078914 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 6 0 1 49.126 49.126 3 8.2053E-05 13825 TMT1-5 118.23 51.934 651.49 703.17 817.01 628.61 890.59 851.9 615 715 823 635 907 823 2 2 2 2 2 2 67674 16152 500 15951 24703 32007;32008 32008 2 SGETEDTFIADLVVGLCTGQIK Unmodified 2352.1519 0.15189213 514;581 P06733;P06733-2;P09104;P09104-2;P13929-3;P13929-2;P13929 ENO1;ENO2;ENO3 Alpha-enolase;Gamma-enolase;Beta-enolase no no 0 0 0 0 0 5.83 0.687 2 3 1 92.761 92.761 3;4 8.6532E-37 30437 TMT1-5 148.26 127.63 418.72 497.3 450.47 367.86 457.88 471.29 395 501 461 369 468 453 10 11 11 11 10 9 159520 16153 514;581 15952 24704;24705;24706;24707;24708;24709 32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019 32013 11 SGETWDSK Unmodified 908.38758 0.3875758 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 4 0 1 39.421 39.421 2 0.0081623 10092 TMT1-3 68.735 48.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16154 2782 15953 24710 32020 32020 1 SGEVFDKDLSK Unmodified 1223.6034 0.60338224 3011 Q9Y4D1;Q9Y4D1-2 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 1 5 0 1 48.026 48.026 3 0.029267 13231 TMT1-4 55.452 18.605 184.51 246.64 159.21 153.59 162.7 204.29 174 246 168 152 169 196 1 1 1 1 1 1 13330 16155 3011 15954 24711 32021 32021 1 SGEVLVNVK Unmodified 943.53385 0.53384611 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 6 0 1 47.665 47.665 2 0.0018781 13195 TMT1-5 111.17 47.433 169.2 257.65 198.74 103.12 221.64 261.24 160 256 203 109 225 251 1 1 1 1 1 1 23879 16156 1695 15955 24712 32022 32022 1 SGFEPASLK Unmodified 934.476 0.47599688 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 6.5 0.5 1 1 49.231 49.231 2;3 0.00014586 13766 TMT1-5 148.52 82.093 307.7 648.47 574.83 421.18 657.52 484.39 293 638 586 428 663 472 2 2 2 2 2 2 57015 16157 1019 15956 24713;24714 32023;32024 32023 2 SGFEPASLKEEVGEEAIVELVENGK Unmodified 2659.3229 0.32285687 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 4.5 0.5 1 1 81.584 81.584 4 7.268E-20 26464 TMT1-4 115.55 89.345 153.7 171.91 171.38 130.17 148.64 157.79 145 174 174 131 153 152 3 3 3 3 3 3 19398 16158 1019 15957 24715;24716 32025;32026;32027 32027 3 SGFIEEDELGFILK Unmodified 1595.8083 0.80828964 811 P20472 PVALB Parvalbumin alpha yes yes 0 0 0 0 0 5 0 1 80.343 80.343 3 0.00041684 25904 TMT1-4 77.078 59.378 23.458 29.274 0 94.637 24.143 53.677 22 29 0 87 29 51 1 1 0 1 1 1 3218.4 16159 811 15958 24717 32028 32028 1 SGFLEGLR Acetyl (Protein N-term) 919.47633 0.47633123 371 O95807 TMEM50A Transmembrane protein 50A yes yes 0 1 0 0 0 3 0 1 69.022 69.022 2 0.00017421 22725 TMT1-2 60.682 37.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16160 371 15959 24718 32029 32029 1 SGFSLDNGELR Unmodified 1193.5677 0.56766543 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 4 0 1 50.982 50.982 2 0.0001834 14665 TMT1-3 84.882 43.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16161 2934 15960 24719 32030 32030 1 SGFTYVLHEGECCGR Unmodified 1770.7454 0.74538858 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 47.061 47.061 3 9.0389E-28 12844 TMT1-4 148.72 142.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16162 471 15961 24720 32031 32031 1 SGFWDNLVLK Unmodified 1177.6132 0.61315906 2129 Q86YL5;Q86YL5-2 TDRP Testis development-related protein yes no 0 0 0 0 0 9 0 1 73.422 73.422 3 0.018586 20982 TMT1-8 51.092 23.994 38.137 58.591 32.884 52.987 42.313 37.169 36 58 36 51 44 36 1 1 1 1 1 1 5258.6 16163 2129 15962 24721 32032 32032 1 SGGAATVEEAPSEFEEEASR Unmodified 2051.892 0.89197228 2264 Q8TF64 GIPC3 PDZ domain-containing protein GIPC3 yes yes 0 0 0 0 0 2 0 1 52.059 52.059 3 2.1505E-07 15688 TMT1-1 89.011 80.411 23.086 51.982 43.417 21.458 0 30.914 22 51 44 22 0 29 1 1 1 1 0 1 7896.7 16164 2264 15963 24722 32033 32033 1 SGGASHSELIHNLR Unmodified 1476.7433 0.74333839 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 6.67 1.25 1 1 1 29.946 29.946 4 1.0765E-07 6091 TMT1-4 110.92 99.976 445.53 626.41 511.08 530.42 572.26 506.01 421 625 531 523 587 490 4 4 4 4 4 4 42002 16165 840 15964 24723;24724;24725 32034;32035;32036;32037 32035 4 SGGELDIVVTSNK Unmodified 1317.6776 0.67760981 2437 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5;Q96M27-4 PRRC1 Protein PRRC1 yes no 0 0 0 0 0 5 0 1 54.268 54.268 3 0.023541 15695 TMT1-4 49.31 26.431 265.16 240.73 314.57 186.57 299.46 350.7 250 248 313 193 306 337 1 1 1 1 1 1 20237 16166 2437 15965 24726 32038 32038 1 SGGGGDIHQGFQSLLTEVNK Unmodified 2043.0021 0.0021318501 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 7 0.816 1 1 1 61.299 61.299 4 3.9526E-05 18538 TMT1-5 66.325 50.202 176.25 292.56 246.29 250.98 229.12 302.6 167 290 255 247 240 290 3 3 3 3 3 3 44592 16167 1014 15966 24727;24728;24729 32039;32040;32041 32039 3 SGGSGGCSGAGGASNCGTGSGR Unmodified 1856.7126 0.7125849 1808 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 0 3 0 1 20.104 20.104 3 3.4112E-05 3520 TMT1-2 65.16 56.228 0 0 0 0 4.0415 4.1487 0 0 0 0 4 4 0 0 0 0 1 1 660 16168 1808 15967 24730 32042 32042 1 SGGTALHVAAAK Unmodified 1081.588 0.58800695 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 8 1 1 1 34.908 34.908 3 0.00023653 7524 TMT1-6 90.913 65.527 168.38 217.42 190.36 175.58 173.19 234.91 159 218 196 174 181 225 2 2 2 2 2 2 31002 16169 118 15968 24731;24732 32043;32044 32043 2 SGHFEQAIK Unmodified 1015.5087 0.50869399 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 35.337 35.337 3 0.012069 7812 TMT1-7 64.297 38.359 99.666 122.53 97.219 118.78 117.46 167.21 94 123 102 116 123 160 1 1 1 1 1 1 5061.1 16170 1546 15969 24733 32045 32045 1 SGIDFGSLLK Unmodified 1035.5601 0.56006086 148 O15439-2;O15439;O15439-4;O15439-3 ABCC4 Multidrug resistance-associated protein 4 yes no 0 0 0 0 0 8 0 1 69.682 69.682 2 0.0005343 21352 TMT1-7 114.4 63.055 84.164 184.82 125.04 116.4 156.31 166.1 80 181 131 116 160 160 1 1 1 1 1 1 7874.9 16171 148 15970 24734 32046 32046 1 SGIEILSLYDAENLGK Unmodified 1720.8883 0.88833087 2910 Q9ULC5-3;Q9ULC5;Q9ULC5-4 ACSL5 Long-chain-fatty-acid--CoA ligase 5 yes no 0 0 0 0 0 6 0 1 76.635 76.635 3 1.0587E-11 24625 TMT1-5 122.93 96.202 30.371 82.141 55.722 43.835 49.77 45.484 29 80 58 44 51 44 1 1 1 1 1 1 9265.2 16172 2910 15971 24735 32047 32047 1 SGILPILVHCLER Unmodified 1505.8388 0.83881868 85 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 0 8 0 1 68.575 68.575 3 0.0010208 20923 TMT1-7 56.482 40.344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16173 85 15972 24736 32048 32048 1 SGILPILVK Unmodified 938.61645 0.61645353 78 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 0 9 0 1 68.379 68.379 2 0.0095362 18997 TMT1-8 93.429 53.886 68.743 117.64 68.662 65.534 75.435 152.42 65 116 73 65 80 145 1 1 1 1 1 1 12845 16174 78 15973 24737 32049 32049 1 SGINCPIQK Unmodified 1015.5121 0.51206481 1401 P61916-2;P61916 NPC2 Epididymal secretory protein E1 yes no 0 0 0 0 0 7 0 1 41.56 41.56 3 0.0081053 10177 TMT1-6 69.276 30.127 129.91 208.63 171.12 89.324 171.15 196.59 123 207 174 94 174 189 1 1 1 1 1 1 17034 16175 1401 15974 24738 32050 32050 1 SGIVQYLQK Unmodified 1034.576 0.57604528 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 8 0 1 57.197 57.197 3 0.00071321 16396 TMT1-7 101.11 24.206 108.22 138.04 89.306 80.243 99.662 97.36 102 138 94 80 102 94 1 1 1 1 1 1 29590 16176 2791 15975 24739 32051 32051 1 SGIYETR Unmodified 824.40283 0.40283194 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 0 3 0 1 31.54 31.54 2 0.0092459 7946 TMT1-2 113.14 54.89 161.48 164.6 131.7 155.53 146.43 157.85 152 167 138 152 152 152 1 1 1 1 1 1 18426 16177 2387 15976 24740 32052 32052 1 SGKPAELLK Unmodified 941.55458 0.55458155 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 7.5 0.5 1 1 42.653 42.653 3 0.0061862 10665 TMT1-6 78.908 4.2688 2129.4 4110.6 2909.1 2221.8 2767 3566.8 2020 4044 3018 2239 2860 3420 3 3 3 3 3 3 272190 16178 937 15977 24741;24742 32053;32054;32055 32053 3 SGKYDLDFK Unmodified 1071.5237 0.52367535 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 6.5 0.5 1 1 49.239 49.239 3 0.02202 13729 TMT1-5 64.103 41.905 5087.1 8189.2 5856.4 4969.3 6167.9 7739 4812 8111 6095 4972 6369 7425 3 3 3 3 3 3 729670 16179 514 15978 24743;24744 32056;32057;32058 32056 3 SGLAYCPNDYHQLFSPR Unmodified 2023.921 0.92104476 233 O60711;O60711-2 LPXN Leupaxin yes no 0 0 0 0 0 7 0 1 55.866 55.866 3 3.5727E-05 15844 TMT1-6 58.539 51.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16180 233 15979 24745 32059 32059 1 SGLELEPEEPPGWR Unmodified 1594.7627 0.76273643 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 3.5 0.5 1 1 59.982 59.982 3 1.6421E-10 19241 TMT1-2 123.75 108.12 53.94 111.72 36.887 84.095 60.965 92.068 51 109 44 80 65 88 2 2 2 2 2 2 18205 16181 2325 15980 24746;24747 32060;32061;32062 32061 3 SGLFPEWK Unmodified 962.48617 0.48616764 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 8 0 1 64.067 64.067 2 0.0063932 19138 TMT1-7 105.81 84.907 184.27 264.33 184.29 271.12 226.46 292.02 174 263 197 262 238 280 1 1 1 1 1 1 28557 16182 2378 15981 24748 32063 32063 1 SGLGSGPK Unmodified 701.3708 0.37080353 110 O14880 MGST3 Microsomal glutathione S-transferase 3 yes yes 0 0 0 0 0 6.5 0.5 1 1 33.794 33.794 2 0.016752 7166 TMT1-6 91.318 54.159 223.12 295.93 301.28 221.11 364.74 353.1 211 297 305 225 370 341 2 2 2 2 2 2 20330 16183 110 15982 24749;24750 32064;32065 32065 2 SGLLEVLVR Unmodified 984.59678 0.59678072 1740 Q13884;Q13884-2 SNTB1 Beta-1-syntrophin yes no 0 0 0 0 0 8 0 1 66.589 66.589 2 0.0070721 20194 TMT1-7 93.649 80.612 77.304 124.54 66.782 97.464 69.02 83.31 73 123 73 94 73 80 1 1 1 1 1 1 20667 16184 1740 15983 24751 32066 32066 1 SGLPDLILGK Unmodified 1011.5964 0.59644637 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 7.5 0.5 1 1 69.246 69.246 2 0.0052897 21112 TMT1-6 91.087 62.36 199.96 259.92 257.19 217.49 231.74 240.7 189 261 262 217 239 232 2 2 2 2 2 2 17906 16185 1098 15984 24752;24753 32067;32068 32067 2 SGLPNFLAVALALGELGYR Unmodified 1960.0782 0.078197327 2053 Q6XQN6;Q6XQN6-3;Q6XQN6-2 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 9 0 2 101.07 101.07 2;3 7.2042E-09 31524 TMT1-8 82.609 63.031 7.2656 53.048 43.451 21.052 21.51 15.577 7 51 44 22 22 15 1 2 2 2 2 1 14465 16186 2053 15985 24754;24755 32069;32070 32070 2 SGLSDIILGK Unmodified 1001.5757 0.57571092 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 7 0 1 65.712 65.712 2 0.0074859 19710 TMT1-6 87.913 26.94 115.73 121.35 103.06 157.36 139.78 135.66 109 123 109 152 145 131 1 1 1 1 1 1 13268 16187 2835 15986 24756 32071 32071 1 SGLTVPTSPK Unmodified 985.54441 0.5444108 1946 Q53EL6-2;Q53EL6 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 0 7 0 1 46.139 46.139 2 1.4482E-05 11995 TMT1-6 118.71 75.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16188 1946 15987 24757 32072 32072 1 SGMVQTEAQYK Unmodified 1240.5758 0.57578728 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 41.895 41.895 2 1.6302E-06 10798 TMT1-4 137.89 118.65 38.121 50.991 42.013 52.616 33.148 60.882 36 51 44 51 36 58 1 1 1 1 1 1 7777.5 16189 936 15988 24758 32073 32073 1 SGMVQTEAQYR Unmodified 1268.5819 0.58193529 1600 Q06124;Q06124-2 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 4 0 1 36.532 36.532 2 3.5624E-05 8948 TMT1-3 93.345 82.974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16190 1600 15989 24759 32074 32074 1 SGNIVAGIANESK Unmodified 1258.6517 0.65172941 1209 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 0 6 0 1 50.052 50.052 3 0.010065 14192 TMT1-5 55.66 31.369 84.848 116.57 67.983 80.397 159.03 135.11 80 116 73 80 160 131 1 1 1 1 1 1 7728 16191 1209 15990 24760 32075 32075 1 SGNTFRPEVHLLPPPSEELALNELVTLTCLAR Unmodified 3572.8661 0.86610265 424 P01876;P01877;P0DOX2 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region yes no 0 0 0 0 1 7 0 1 83.674 83.674 4 0.00030997 26768 TMT1-6 45.227 28.78 15.766 21.727 36.954 13.796 21.081 37.774 15 22 36 15 22 36 1 1 1 1 1 1 5469.3 16192 424 15991 24761 32076 32076 1 SGNTVQYWLLLDR Unmodified 1563.8045 0.80454166 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 7 0 1 71.113 71.113 2 0.00051524 21848 TMT1-6 92.151 66.213 38.318 27.795 28.558 21.531 43.226 22.219 36 29 29 22 43 22 1 1 1 1 1 1 8140.3 16193 3011 15992 24762 32077 32077 1 SGNVAELALK Unmodified 1000.5553 0.55530983 1175 P49321-2;P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 0 6 0 1 52.376 52.376 3 0.01777 15045 TMT1-5 57.019 18.933 77.29 116.95 75.542 81.079 98.818 120.84 73 116 80 80 102 116 1 1 1 1 1 1 14744 16194 1175 15993 24763 32078 32078 1 SGPDVETPSAIQICR Acetyl (Protein N-term) 1670.7934 0.79338463 42 O00154-4;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 1 0 0 0 2 0 1 58.14 58.14 2 3.3463E-08 18109 TMT1-1 82.489 61.117 0 7.3287 7.1343 0 22.778 6.812 0 7 7 0 22 7 0 1 1 0 1 1 6307.4 16195 42 15994 24764 32079 32079 1 SGPEPLQEGPGPK Unmodified 1291.6408 0.64083038 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 4 0 1 42.183 42.183 3 0.00038824 11149 TMT1-3 81.278 58.745 108.09 145.23 105.15 79.333 97.835 151.78 102 145 109 80 102 145 1 1 1 1 1 1 19159 16196 1342 15995 24765 32080 32080 1 SGPESPGSACR Unmodified 1103.4666 0.46657118 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 2.5 0.5 1 1 24.128 24.128 2 3.205E-06 4939 TMT1-2 129.28 117.04 76.256 109.58 75.251 97.643 90.743 90.153 72 109 80 95 94 87 2 2 2 2 2 2 11588 16197 666 15996 24766;24767 32081;32082 32082 2 SGPFGQIFRPDNFVFGQSGAGNNWAK Unmodified 2797.3361 0.33609636 537;1493 P07437;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 1 5 4 1 1 75.119 75.119 4 1.3293E-46 21431 TMT1-8 142.54 109.47 1026 1357.1 985.56 852.39 778.39 1474.5 968 1356 1026 847 830 1404 4 4 4 4 4 4 250320 16198 537;1493 15997 24768;24769 32083;32084;32085;32086 32084 4 SGPHCSESIHR Unmodified 1265.5571 0.55711752 1104 P42785;P42785-2 PRCP Lysosomal Pro-X carboxypeptidase yes no 0 0 0 0 0 3 0 1 18.71 18.71 4 0.0032902 3258 TMT1-2 70.942 55.402 7.4254 4.6447 10.443 1.368 10.397 0 7 5 10 2 10 0 1 1 1 1 1 0 594.84 16199 1104 15998 24770 32087 32087 1 SGPKPFSAPK Unmodified 1014.5498 0.54983053 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 9 0 1 39.754 39.754 3 0.0022766 8035 TMT1-8 78.692 43.468 418.08 679.19 392.38 552.5 645.73 560.41 395 671 425 538 660 543 2 2 2 2 2 2 33589 16200 1555;1556 15999 24771 32088;32089 32088 2 SGPKPFSAPKPQTSPSPK Unmodified 1836.9734 0.9733979 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 2 9 0 2 40.619 40.619 4;5 0.00014197 8289 TMT1-8 61.87 35.141 1013.2 1253.7 1047.3 845.64 941.86 1383.4 956 1259 1077 847 983 1323 3 3 3 3 3 3 111240 16201 1555;1556 16000 24772;24773 32090;32091;32092 32090 3 SGPLKPAR Unmodified 824.48684 0.48683634 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 8 0 1 29.006 29.006 3 0.030261 5404 TMT1-7 65.313 34.749 208.2 222.58 166.37 168.28 230.36 163.99 196 225 174 167 233 160 2 2 2 2 2 2 9497.4 16202 126 16001 24774 32093;32094 32093 2 SGPLPPVPLGIAPPPPTPR Unmodified 1859.0669 0.066904359 1103 P42768 WAS Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 0 8 0 1 67.986 67.986 3 0.026529 20673 TMT1-7 38.2 20.391 77.499 109.98 46.226 44.15 63.095 83.48 73 109 51 44 65 80 1 1 1 1 1 1 6949.7 16203 1103 16002 24775 32095 32095 1 SGQQIVGPPR Unmodified 1037.5618 0.56179219 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 5 0 1 34.396 34.396 2 0.014851 7833 TMT1-4 78.516 46.161 30.776 44.412 19.66 29.72 42.834 53.144 29 44 22 29 44 51 1 1 1 1 1 1 3508.1 16204 2934 16003 24776 32096 32096 1 SGQVLEVSGSK Unmodified 1089.5666 0.5666028 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 5 0 1 42.946 42.946 2 0.00067333 11188 TMT1-4 102.28 56.28 107.9 168.46 116.86 125.09 126.9 127.5 102 167 123 123 131 123 1 1 1 1 1 1 15560 16205 828 16004 24777 32097 32097 1 SGSGTMNLGGSLTR Unmodified 1336.6405 0.6405128 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 6.5 0.5 1 1 43.865 43.865 2 2.9764E-16 11145 TMT1-6 145.52 122.47 161.99 225.56 174.64 153.84 158.73 258.77 153 225 181 153 167 247 2 2 2 2 2 2 41936 16206 1144;1145 16005 24778;24779 32098;32099 32099 2 SGSLENVPNVGVNK Unmodified 1412.726 0.72595699 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 6 0 1 50.292 50.292 2 1.0899E-33 14289 TMT1-5 192.68 145.5 37.885 81.634 55.714 43.84 49.514 52.953 36 80 58 44 51 51 1 1 1 1 1 1 13079 16207 1279 16006 24780 32100 32100 1 SGSMSAYEMR Unmodified 1117.4532 0.4532293 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 4 0 1 38.591 38.591 2 0.0008675 9777 TMT1-3 104.39 86.53 61.254 71.804 103.92 40.98 48.839 76.424 58 73 102 44 51 73 1 1 1 1 1 1 6997.9 16208 536 16007 24781 32101 32101 1 SGSTVFAEIQGVIDACIK Unmodified 1893.9506 0.95061355 2974 Q9Y2T2 AP3M1 AP-3 complex subunit mu-1 yes yes 0 0 0 0 0 7 0 1 86.631 86.631 3 5.3901E-06 27844 TMT1-6 84.035 63.096 15.77 21.738 36.276 29.009 27.967 30.116 15 22 36 29 29 29 1 1 1 1 1 1 2910.2 16209 2974 16008 24782 32102 32102 1 SGSYSYLEER Unmodified 1189.5251 0.52513192 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 3 0 1 41.515 41.515 2 0.00048689 11870 TMT1-2 115.82 73.361 38.226 27.54 44.181 35.51 64.042 67.463 36 29 44 36 65 65 1 1 1 1 1 1 14095 16210 118 16009 24783 32103 32103 1 SGTASVVCLLNNFYPR Unmodified 1796.888 0.88795372 418 P01834;P0DOX7 IGKC Ig kappa chain C region yes no 0 0 0 0 0 9 0 1 76.652 76.652 3 9.7426E-28 22280 TMT1-8 167.03 140.98 146.12 164.67 189.19 105.24 139.5 213.48 138 167 189 109 145 204 3 3 3 3 3 3 32863 16211 418 16010 24784 32104;32105;32106 32105 3 SGTDVDAANLR Unmodified 1117.5364 0.53636531 1099 Q5IS99;Q5IS54;P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 0 0 0 0 0 2.5 0.5 1 1 36.905 36.905 2 9.0204E-09 9774 TMT1-1 163.88 140.45 131.13 158.25 188.26 136.44 168.73 204.12 124 160 189 138 174 196 2 2 2 2 2 2 30845 16212 1099 16011 24785;24786 32107;32108 32107 2 SGTFCLADTCLLLMDK Unmodified 1843.8518 0.85182748 771 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 0 7 0 1 78.934 78.934 3 1.8989E-05 24888 TMT1-6 68.257 64.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16213 771 16012 24787 32109 32109 1 SGTICSSELPGAFEAAGFHLNEHLYNMIIR Unmodified 3333.5911 0.59106677 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 74.918 74.918 4 7.5666E-06 23410 TMT1-6 54.732 44.83 53.84 72.588 86.944 57.549 93.356 67.692 51 73 87 59 94 66 2 2 2 2 2 2 44895 16214 475 16013 24788;24789 32110;32111 32110 2 SGTIFDNFLITNDEAYAEEFGNETWGVTK Unmodified 3267.4884 0.48841864 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 5 2.35 1 2 1 93.132 93.132 4;5 7.0271E-13 30772 TMT1-5 81.534 71.564 230.89 276.4 292.32 180.51 285.28 314.86 218 279 294 186 291 303 5 6 6 6 6 6 127420 16215 918 16014 24790;24791;24792;24793 32112;32113;32114;32115;32116;32117 32114 6 SGTSEFLNK Unmodified 981.47673 0.47672516 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 5.5 0.5 1 1 45.915 45.915 2 1.1778E-05 12468 TMT1-5 156.51 109.94 650.75 897.74 955.94 672.74 893.74 1097 616 900 964 683 920 1053 3 3 3 3 3 3 155010 16216 708 16015 24794;24795 32118;32119;32120 32119 3 SGTTIALK Unmodified 789.45962 0.45961853 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7 0 1 44.057 44.057 2 0.012344 11140 TMT1-6 96.711 75.809 170.99 310.5 212.81 250.17 146.04 316.7 162 306 225 243 161 301 1 1 1 1 1 1 45168 16217 228 16016 24796 32121 32121 1 SGTTWVSQILDMIYQGGDLEK Unmodified 2340.1308 0.13076276 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 8.5 0.5 1 1 101.97 101.97 4 0.00038234 31732 TMT1-8 52.877 35.658 17.823 50.474 27.527 16.458 25.644 53.634 17 49 29 17 27 51 2 2 2 2 2 2 4631.9 16218 617;1214 16017 24797;24798 32122;32123 32123 2 SGTVDPQELQK Unmodified 1200.5986 0.59863121 966 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 0 4 0 2 44.115 44.115 2;3 0.00086105 11899 TMT1-3 88.155 40.895 361.91 396.7 332.89 234.43 369.68 435.04 341 401 341 239 378 418 2 2 2 2 2 2 80988 16219 966 16018 24799;24800 32124;32125 32124 2 SGVAITFLTK Unmodified 1035.5964 0.59644637 2544 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 0 9 0 1 63.837 63.837 2 0.0004027 17241 TMT1-8 98.943 69.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16220 2544 16019 24801 32126 32126 1 SGVGNIFIK Unmodified 933.52837 0.5283668 662 P11940-2;P11940;Q4VXU2;Q4VXU2-2;Q96DU9-2;Q96DU9 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 0 0 0 0 0 9 0 1 57.074 57.074 2 0.0035975 14537 TMT1-8 105.52 35.922 215.67 272.69 130.39 203.18 174.22 259.4 203 272 145 196 184 248 1 1 1 1 1 1 25258 16221 662 16020 24802 32127 32127 1 SGVLDESTIATILR Unmodified 1473.8039 0.80387296 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 6 0 2 71.716 71.716 2;3 5.6893E-06 22665 TMT1-5 101.43 68.343 92.007 153.93 95.358 94.834 118.3 174.65 87 152 101 94 123 167 2 2 2 2 2 2 24286 16222 367 16021 24803;24804 32128;32129 32128 2 SGVLDTLTK Unmodified 932.51786 0.51786169 2460 Q99417 MYCBP C-Myc-binding protein yes yes 0 0 0 0 0 6.5 0.5 1 1 54.177 54.177 2 0.0011314 15169 TMT1-6 123.86 66.683 306.56 512.02 340.38 306 376.51 475.35 290 506 357 305 389 456 2 2 2 2 2 2 33209 16223 2460 16022 24805;24806 32130;32131 32131 2 SGVNSELVK Unmodified 931.49746 0.4974606 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 0 5 0 1 41.567 41.567 2 0.0019468 10666 TMT1-4 109.66 39.408 92.043 107.62 128.55 140.78 126.95 105.11 87 109 131 138 131 102 1 1 1 1 1 1 14577 16224 1028 16023 24807 32132 32132 1 SGVSITIDDPVR Unmodified 1257.6565 0.65648044 2897 Q9UKV3-5;Q9UKV3;Q9UKV3-3;Q9UKV3-2 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 4 0 1 52.917 52.917 2 0.0016154 15391 TMT1-3 89.171 52.586 77.382 85.906 86.389 49.407 63.11 76.017 73 87 87 51 65 73 1 1 1 1 1 1 12642 16225 2897 16024 24808 32133 32133 1 SGVSLAALK Unmodified 844.50182 0.5018177 630;745;744 P10412;P16402;P16403 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 0 0 0 0 0 8.5 0.5 1 1 53.174 53.174 2 0.00018231 14902 TMT1-7 146.81 77.386 1588 2337.7 1993.4 2079.8 3164.1 2457.5 1502 2329 2065 2066 3197 2390 2 2 2 2 2 2 552600 16226 630;744;745 16025 24809;24810 32134;32135;32136 32135 3 SGVSLAALKK Unmodified 972.59678 0.59678072 630;745;744 P10412;P16402;P16403 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 0 0 0 0 1 5 4 1 1 49.182 49.182 3 0.00025079 11263 TMT1-8 121.9 73.259 3879.5 4747.4 3454.4 4180.1 4252 5556.2 3657 4762 3646 4086 4431 5326 2 2 2 2 2 2 297520 16227 630;744;745 16026 24811;24812 32137;32138 32138 2 SGWALNMK Unmodified 905.44292 0.44292261 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 9 0 1 54.563 54.563 2 0.018665 13583 TMT1-8 79.713 52.188 46.191 104.02 83.388 95.897 99.712 74.973 44 102 87 94 102 73 1 1 1 1 1 1 6790.6 16228 1083 16027 24813 32139 32139 1 SGYITIGYR Unmodified 1028.5291 0.52909508 2389 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 0 7 0 1 49.016 49.016 2 0.0050349 13134 TMT1-6 67.507 36.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16229 2389 16028 24814 32140 32140 1 SGYLAGDK Unmodified 809.39193 0.3919329 894 P26038 MSN Moesin yes yes 0 0 0 0 0 5 0 1 39.864 39.864 2 0.008661 9965 TMT1-4 101.54 48.372 1807.2 2750.2 1956.2 1800.3 2279.2 2345.2 1708 2730 2043 1793 2335 2261 2 2 2 2 2 2 374270 16230 894 16029 24815 32141;32142 32141 2 SGYLLPDTK Unmodified 992.51786 0.51786169 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 6 0 1 51.863 51.863 2 0.00069711 14856 TMT1-5 130.56 116.97 894.72 1248.4 952.56 709.96 900.89 1356.9 845 1245 983 717 937 1297 2 2 2 2 2 2 142550 16231 708 16030 24816 32143;32144 32143 2 SGYLSSER Unmodified 897.41921 0.41921028 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 3 0 1 32.134 32.134 2 0.0058132 8233 TMT1-2 113.7 47.801 215.26 267.24 203.03 158.66 219.23 257.05 203 268 210 160 225 247 2 2 2 2 2 2 34324 16232 720 16031 24817 32145;32146 32146 2 SGYPDIGFPLFPLSK Unmodified 1636.8501 0.85009487 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 9 0 1 84.007 84.007 3 4.3564E-12 25096 TMT1-8 121.76 98.156 84.453 124.1 127.92 109.25 120.3 127.69 80 124 130 109 124 123 2 2 2 2 2 2 22182 16233 2594 16032 24818 32147;32148 32147 2 SGYQALPWVR Unmodified 1175.6087 0.60874239 2569 Q9BXS5;Q9BXS5-2;Q9Y6Q5;Q9Y6Q5-2 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 yes no 0 0 0 0 0 8 0 1 57.617 57.617 2 0.027026 16566 TMT1-7 72.275 40.902 61.623 72.832 40.935 44.737 48.666 76.429 58 73 44 44 51 73 1 1 1 1 1 1 11611 16234 2569 16033 24819 32149 32149 1 SHAVACVNQFIISR Unmodified 1600.8144 0.81439484 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 9 0 1 48.239 48.239 3 1.4708E-11 11088 TMT1-8 109.64 81.347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16235 2336 16034 24820 32150 32150 1 SHAVFQIILR Unmodified 1182.6873 0.68732706 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 9 0 1 52.502 52.502 2 0.016901 12805 TMT1-8 71.614 44.818 15.604 36.388 51.669 28.096 27.753 37.584 15 36 51 29 29 36 1 1 1 1 1 1 3711.3 16236 39 16035 24821 32151 32151 1 SHCIAEVENDEMPADLPSLAADFVESK Unmodified 2973.3372 0.33720308 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 4.67 0.471 1 2 77.988 77.988 4;5 2.2656E-22 25394 TMT1-3 109.26 91.356 253.03 426.68 314.88 246.42 312.7 494.23 239 422 326 248 326 472 6 7 7 7 7 7 69511 + 16237 28 16036 24822;24823;24824 32152;32153;32154;32155;32156;32157;32158 32154 7 SHEAEVLK Unmodified 911.47125 0.47124585 752 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 0 3.5 0.5 1 1 31.822 31.822 3 0.00088703 7059 TMT1-3 124.08 105.94 323.16 602.08 359.75 282.38 350.2 389.76 306 592 379 284 360 375 3 3 3 3 3 3 59207 16238 752 16037 24825;24826 32159;32160;32161 32161 3 SHEGETAYIR Unmodified 1161.5415 0.54145068 1615 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 0 0 0 0 0 2 0 1 27.165 27.165 3 0.00015556 5859 TMT1-1 106.35 79.099 93.504 92.437 76.215 97.137 114.61 66.02 88 94 80 95 116 65 2 2 2 2 2 2 10971 16239 1615 16038 24827 32162;32163 32162 2 SHFEQWGTLTDCVVMR Unmodified 1964.8873 0.88730179 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 7 0 1 58.998 58.998 3 0.020013 17084 TMT1-6 45.704 39.267 68.789 78.914 93.769 64.145 69.746 106.74 65 80 94 65 73 102 1 1 1 1 1 1 12236 16240 601 16039 24828 32164 32164 1 SHHWGYGK Acetyl (N-term) 1012.4515 0.45151346 406 P00918 CA2 Carbonic anhydrase 2 yes yes 1 0 0 0 0 8 0 1 31.294 31.294 3 0.0017002 6287 TMT1-7 51.995 31.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16241 406 16040 24829 32165 32165 1 SHIEIIR Unmodified 866.4974 0.49740102 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 5 0 1 33.659 33.659 3 0.003186 7498 TMT1-4 100.39 20.922 91.925 122.4 135.99 123.82 133.48 150.76 87 123 138 123 138 145 1 1 1 1 1 1 28651 16242 389 16041 24830 32166 32166 1 SHILTHAK Unmodified 905.5083 0.50830006 885 P25490 YY1 Transcriptional repressor protein YY1 yes yes 0 0 0 0 0 8 0 1 26.84 26.84 3 0.021308 4769 TMT1-7 61.962 30.673 30.886 20.973 21.076 29.492 50.43 45.465 29 22 22 29 51 44 1 1 1 1 1 1 2597.4 16243 885 16042 24831 32167 32167 1 SHIMAAK Unmodified 756.39524 0.39524414 1161 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 0 0 8 0 1 30.354 30.354 3 0.0088836 5902 TMT1-7 83.614 32.648 115.45 129.2 143.78 107.32 172.45 134.73 109 131 145 109 174 131 1 1 1 1 1 1 7096.2 16244 1161 16043 24832 32168 32168 1 SHKDEVVK Unmodified 940.49779 0.49779495 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 5 0 1 28.417 28.417 4 0.0098017 5490 TMT1-4 76.679 50.56 225.5 512.48 258.19 410.75 355.67 393.86 214 500 285 396 371 379 1 1 1 1 1 1 11844 16245 1139 16044 24833 32169 32169 1 SHLLAADAPSSAAWVQTLCR Unmodified 2153.0688 0.068771627 2484 Q99704-2;Q99704 DOK1 Docking protein 1 yes no 0 0 0 0 0 8 0 1 59.896 59.896 3 4.1018E-18 17508 TMT1-7 126.4 117.56 30.631 35.375 51.659 27.964 34.795 45.911 29 36 51 29 36 44 1 1 1 1 1 1 8793.3 16246 2484 16045 24834 32170 32170 1 SHLLAAQHR Unmodified 1031.5625 0.5624609 2080 Q7L591;Q7L591-3 DOK3 Docking protein 3 yes no 0 0 0 0 0 7 0 1 23.3 23.3 3 0.00041464 3994 TMT1-6 78.334 26.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16247 2080 16046 24835 32171 32171 1 SHLLNCCPHDVLSGTR Unmodified 1864.8672 0.86723505 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 0 7 0 1 39.418 39.418 4 1.8643E-05 9347 TMT1-6 84.105 80.38 68.624 133.5 75.309 65.004 82.532 159.68 65 131 80 65 87 152 1 1 1 1 1 1 10457 16248 2414 16047 24836 32172 32172 1 SHLPLALLPQTLLDQK Unmodified 1786.0353 0.035269879 617 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2 SULT1A4;SULT1A3 Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 0 0 0 0 0 9 0 3 71.712 71.712 3;4 1.0576E-08 20323 TMT1-8 107.98 83.047 138.54 242.71 134.32 164.18 143.35 235.76 131 239 145 160 152 225 2 2 2 2 2 2 43647 16249 617 16048 24837;24838;24839 32173;32174;32175 32174 3 SHLQGEK Unmodified 797.40317 0.40316629 1964 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 0 0 5 0 1 24.463 24.463 3 0.0027296 4091 TMT1-4 68.915 43.992 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16250 1964 16049 24840 32176 32176 1 SHLQLIK Unmodified 837.50724 0.50723743 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 8 0 1 40.268 40.268 3 0.0050447 9718 TMT1-7 92.925 42.885 146.43 149.36 148.96 130.23 216.69 155.85 138 152 152 131 218 152 1 1 1 1 1 1 13609 16251 2375 16050 24841 32177 32177 1 SHLQYFGR Unmodified 1006.4985 0.49846366 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 7 0 1 35.353 35.353 3 0.014575 7743 TMT1-6 67.494 30.937 302.47 301.14 305.66 301.1 340.08 294.11 285 307 313 298 348 285 1 1 1 1 1 1 11400 16252 758 16051 24842 32178 32178 1 SHPDLLQLPR Unmodified 1174.6459 0.64585618 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 6 0 1 45.496 45.496 3 0.00012857 12344 TMT1-5 110.53 86.014 255.19 352.77 272.33 232.13 277.27 387.57 241 352 282 232 288 371 1 1 1 1 1 1 39779 16253 1916 16052 24843 32179 32179 1 SHPLDPIDTVDFER Unmodified 1639.7842 0.78420015 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 3 0 1 54.222 54.222 3 5.5907E-17 16950 TMT1-2 145.81 126.07 46.2 119.15 69.039 81.871 77.322 75.612 44 116 74 80 80 73 2 2 2 2 2 2 17630 16254 1146 16053 24844 32180;32181 32181 2 SHSAHFFEFLTK Unmodified 1449.7041 0.70409934 948 P30046;P30046-2;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 0 8.33 0.471 2 1 52.734 52.734 3;4 0.00031247 14745 TMT1-7 89.189 82.782 341.87 532.16 521.09 298.83 417.56 569.05 324 530 525 309 431 545 3 3 3 3 3 3 39601 16255 948 16054 24845;24846;24847 32182;32183;32184 32183 3 SHSIFLINVK Unmodified 1156.6604 0.66044361 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 9 0 1 54.655 54.655 3 0.0019471 13641 TMT1-8 75.652 48.171 161.24 155.3 179.62 161.01 168.15 188.15 152 159 182 160 174 181 2 2 2 2 2 2 14816 16256 998 16055 24848 32185;32186 32186 2 SHSIVQK Unmodified 797.43955 0.43955179 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 7 0 1 28.681 28.681 3 0.0032667 5161 TMT1-6 100.07 72.952 54.215 49.888 43.08 28.323 42.898 53.142 51 51 44 29 44 51 1 1 1 1 1 1 1494.8 16257 1785 16056 24849 32187 32187 1 SHSPPLK Unmodified 764.41809 0.41808807 2103 Q86TP1;Q86TP1-2;Q86TP1-5;Q86TP1-4;Q86TP1-3;Q86TP1-6;Q86TP1-7 PRUNE Protein prune homolog yes no 0 0 0 0 0 6 0 1 27.463 27.463 3 0.036555 5344 TMT1-5 55.441 44.29 37.921 65.546 63.256 66.23 55.557 60.243 36 65 65 65 58 58 1 1 1 1 1 1 4530.9 16258 2103 16057 24850 32188 32188 1 SHTDQLVLIFAGK Unmodified 1427.7773 0.77726428 2919 Q9UMX0-4;Q9UMX0-2;Q9UMX0 UBQLN1 Ubiquilin-1 yes no 0 0 0 0 0 8 0 1 63.101 63.101 3 0.00030436 18795 TMT1-7 84.365 54.676 130.07 184.26 163.94 113.23 201.22 172.28 123 184 167 116 203 167 1 1 1 1 1 1 20461 16259 2919 16058 24851 32189 32189 1 SHTEEDCTEELFDFLHAR Unmodified 2234.9539 0.95386103 548 P07919 UQCRH Cytochrome b-c1 complex subunit 6, mitochondrial yes yes 0 0 0 0 0 3.5 0.5 1 1 62.898 62.898 4 4.532E-25 20381 TMT1-2 147.64 140 154.28 127.11 111.87 141.82 124.78 167 145 131 117 138 131 160 3 3 3 3 3 3 57059 16260 548 16059 24852;24853 32190;32191;32192 32190 3 SHTFPELAYR Unmodified 1219.5986 0.59857163 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 5 0 1 42.483 42.483 3 0.04317 11040 TMT1-4 45.939 28.075 61.318 110.84 60.039 74.79 75.523 137.49 58 109 65 73 80 131 1 1 1 1 1 1 5358.9 16261 2740 16060 24854 32193 32193 1 SHTILLVQPTK Acetyl (N-term) 1277.7343 0.73433683 1521 P84090 ERH Enhancer of rudimentary homolog yes yes 1 0 0 0 0 6 0 1 52.589 52.589 2 3.5627E-55 15171 TMT1-5 101.65 65.251 107.47 248.2 122.19 92.405 162.4 234.15 102 242 131 94 167 224 1 1 1 1 1 1 34474 16262 1521 16061 24855 32194 32194 1 SHTLAQCLGFQEFQK Unmodified 1792.8567 0.85665359 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 8 0 1 56.76 56.76 3 4.2683E-15 16262 TMT1-7 135.86 110.27 92.336 100.88 85.083 56.857 77.96 90.517 87 102 87 58 80 87 1 1 1 1 1 1 13248 16263 651 16062 24856 32195 32195 1 SHWLGPNYTK Unmodified 1201.588 0.58800695 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 8.5 0.5 1 1 42.967 42.967 3 0.0012001 9139 TMT1-8 84.31 50.444 246.67 333 279.67 216.34 280.13 325.66 233 333 287 218 288 313 2 2 2 2 2 2 25444 16264 1552 16063 24857;24858 32196;32197 32197 2 SHYEEGPGK Unmodified 1002.4407 0.44067401 729 P15954 COX7C Cytochrome c oxidase subunit 7C, mitochondrial yes yes 0 0 0 0 0 3 0.707 1 2 1 27.142 27.142 3;4 9.3403E-05 6125 TMT1-2 136.57 86.526 642.42 802.61 633.85 672.55 703.81 810.33 606 805 661 662 729 779 6 6 6 6 6 6 73998 16265 729 16064 24859;24860;24861;24862 32198;32199;32200;32201;32202;32203 32200 6 SIAAATSALVK Unmodified 1030.6023 0.60226003 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 6.75 3.34 1 1 2 55.775 55.775 2 2.1741E-29 13862 TMT1-8 202.05 127.64 5960.7 7264.3 6802 4927.2 6110.5 7669.3 5627 7312 6920 4984 6310 7358 8 8 8 8 8 8 1231000 16266 3010;3014 16065 24863;24864;24865;24866 32204;32205;32206;32207;32208;32209;32210;32211;32212 32210 9 SIAEEQYSDLEKEK Unmodified 1667.789 0.78901076 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 4 0 1 48.827 48.827 3 1.3557E-10 13812 TMT1-3 126.88 110.74 210.2 241.47 173.91 143.29 256.94 276.22 198 243 181 145 261 266 1 1 1 1 1 1 19180 16267 251 16066 24867 32213 32213 1 SIAELVPK Unmodified 855.50657 0.50656873 1391 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 0 7 0 1 57.146 57.146 2 0.02794 16356 TMT1-6 83.265 34.761 99.174 168.65 140.76 123.68 126.16 150.97 94 167 145 123 131 145 1 1 1 1 1 1 9997.1 16268 1391 16067 24868 32214 32214 1 SIAFPSIGSGR Unmodified 1090.5771 0.57710791 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 9 0 1 56.057 56.057 2 3.3986E-06 14224 TMT1-8 120.76 63.204 292.81 347.14 266.37 223.59 343.37 393.15 276 349 276 225 351 378 2 2 2 2 2 2 43103 16269 268 16068 24869 32215;32216 32216 2 SIAPGAFDR Unmodified 932.47158 0.4715802 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 5 0 1 43.73 43.73 2 0.00070611 11487 TMT1-4 130.31 67.596 332.82 525.88 424.09 348.34 358.78 417.23 315 522 437 348 372 401 1 1 1 1 1 1 102550 16270 1067 16069 24870 32217 32217 1 SIAPGAFDRLPNLSSLTLSR Unmodified 2114.1484 0.14840216 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 1 9 0 1 69.649 69.649 3 3.1155E-15 19524 TMT1-8 104.45 66.68 46.517 49.881 74.573 26.622 33.537 84.323 44 51 73 29 36 80 1 1 1 1 1 1 7463.7 16271 1067 16070 24871 32218 32218 1 SIAQYWLGCPAPGHL Unmodified 1668.8082 0.80824683 456 P04004 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes yes 0 0 0 0 0 9 0 1 71.015 71.015 3 0.00023978 20053 TMT1-8 67.115 47.009 30.516 51.244 57.566 44.025 33.8 53.402 29 51 58 44 36 51 1 1 1 1 1 1 20072 16272 456 16071 24872 32219 32219 1 SIATEIILEIK Unmodified 1228.7279 0.72785447 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 6 0 1 77.806 77.806 2 0.005414 25096 TMT1-5 58.592 30.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16273 1106 16072 24873 32220 32220 1 SIATLAITTLLK Unmodified 1243.7751 0.77513901 3047;2838 Q9Y678;Q9UBF2;Q9UBF2-2 COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma-2 no no 0 0 0 0 0 9 0 1 83.087 83.087 3 2.1545E-07 24824 TMT1-8 113.22 84.826 75.804 147.17 119.38 125.24 110.64 143.95 72 145 124 123 116 138 2 2 2 2 2 2 19160 16274 3047;2838 16073 24874 32221;32222 32222 2 SIATTLIDDTSSEVLDELYR Unmodified 2240.106 0.1059878 353 O95379-3;O95379-2;O95379;O95379-4 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes no 0 0 0 0 0 4 0 1 91.106 91.106 3 5.2668E-10 30253 TMT1-3 97.384 87.634 11.665 45.771 15.455 27.3 10.452 23.154 11 44 18 26 11 22 1 2 2 2 1 2 7539.1 16275 353 16074 24875 32223;32224 32224 2 SIAVAEAACPGITDK Unmodified 1501.7446 0.74464352 2825 Q9P289;Q9P289-2;Q9P289-3 STK26 Serine/threonine-protein kinase 26 yes no 0 0 0 0 0 5 0 1 54.291 54.291 2 0.0027913 15737 TMT1-4 73.927 37.503 15.82 29.433 21.308 14.592 28.337 38.633 15 29 22 15 29 37 1 1 1 1 1 1 7052 16276 2825 16075 24876 32225 32225 1 SICEVLDLER Unmodified 1232.6071 0.60708741 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 0 4 0 1 63.518 63.518 2 0.0023718 19626 TMT1-3 99.568 59.946 84.181 169.76 134.92 85.067 105.41 136.64 80 167 138 87 109 131 1 1 1 1 1 1 22820 16277 1028 16076 24877 32226 32226 1 SICTTVLELLDK Unmodified 1390.7378 0.73776723 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 7 0 1 83.56 83.56 3 1.1387E-07 26721 TMT1-6 120.55 76.925 183.38 559.01 445.1 358.96 366.83 534.26 176 544 458 359 384 511 2 2 2 2 2 2 76437 16278 909 16077 24878 32227;32228 32228 2 SICTTVLELLDKYLIANATNPESK Unmodified 2692.3993 0.39933305 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 1 9 0 1 95.685 95.685 4 3.2032E-25 29522 TMT1-8 112.36 96.063 93.53 96.825 68.203 101.07 105.19 121.72 88 98 73 98 109 117 3 3 3 3 3 3 9670.6 16279 909 16078 24879 32229;32230;32231 32230 3 SIDAIPDNQK Unmodified 1099.551 0.55095274 1144 P47756 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 0 0 4 0 1 45.323 45.323 3 0.015552 12413 TMT1-3 59.067 33.85 53.863 87.764 70.12 74.73 46.774 91.407 51 87 73 73 51 87 1 1 1 1 1 1 10702 16280 1144 16079 24880 32232 32232 1 SIDDEITEAK Unmodified 1119.5295 0.52954859 1673 Q13131;Q13131-2 PRKAA1 5'-AMP-activated protein kinase catalytic subunit alpha-1 yes no 0 0 0 0 0 2 0 1 50.212 50.212 3 0.00014342 14999 TMT1-1 81.525 21.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16281 1673 16080 24881 32233 32233 1 SIDDLEEK Unmodified 947.44476 0.44475633 595;593;592 P09493-2;P09493-3;P09493-8 no no 0 0 0 0 0 2.17 0.687 1 3 2 49.263 49.263 2;3 1.4326E-08 14672 TMT1-1 178.65 67.614 3589.4 4940.6 4971.1 3422.9 4314.2 5519.2 3396 4949 5026 3477 4456 5293 7 7 7 7 7 7 890890 16282 592;593;595 16081 24882;24883;24884;24885;24886;24887 32234;32235;32236;32237;32238;32239;32240 32236 7 SIDFPLTK Unmodified 919.50148 0.50148335 306 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 0 7 0 1 61.071 61.071 2 0.00712 17917 TMT1-6 103.56 40.905 221.88 386.19 253.36 228.16 316.19 325.7 210 381 266 228 323 314 1 1 1 1 1 1 32864 16283 306 16082 24888 32241 32241 1 SIDNGIFVQLVQANSPASLVGLR Unmodified 2397.3016 0.30160833 80 O00560-3;O00560;O00560-2 SDCBP Syntenin-1 yes no 0 0 0 0 0 9 0 1 87.341 87.341 3 0.00033582 26410 TMT1-8 51.811 28.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16284 80 16083 24889 32242 32242 1 SIDQDYER Unmodified 1024.4462 0.44615331 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 2 0 1 34.943 34.943 2 0.0040694 8967 TMT1-1 127.68 104.16 54.258 42.453 42.115 59.987 47.708 83.919 51 44 44 58 51 80 1 1 1 1 1 1 8055.6 16285 2852 16084 24890 32243 32243 1 SIDQLRK Unmodified 858.49232 0.49231565 166 O43306-2;O43306 ADCY6 Adenylate cyclase type 6 yes no 0 0 0 0 1 7 0 1 37.843 37.843 3 0.0048601 8720 TMT1-6 60.972 15.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16286 166 16085 24891 32244 32244 1 SIDSTEPLDILEK Unmodified 1458.7454 0.74535503 1959 Q5HYC2-2;Q5HYC2 KIAA2026 Uncharacterized protein KIAA2026 yes no 0 0 0 0 0 7 0 1 97.883 97.883 3 0.019963 31784 TMT1-6 50.675 9.135 115.33 151.54 144.19 67.918 174.26 134.67 109 152 145 73 174 131 1 1 1 1 1 1 31628 16287 1959 16086 24892 32245 32245 1 SIEALLEAGQAR Unmodified 1256.6725 0.67246486 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 6 0 1 63.738 63.738 2 0.0022304 19559 TMT1-5 86.463 50.081 46.54 88.801 37.612 99.514 52.414 107.24 44 87 44 94 58 102 1 1 1 1 1 1 8446.8 16288 2828 16087 24893 32246 32246 1 SIEAVHEDIR Unmodified 1167.5884 0.58840088 871 P23919-2;P23919 DTYMK Thymidylate kinase yes no 0 0 0 0 0 2 0 1 37.199 37.199 3 0.00016544 9831 TMT1-1 104.82 61.312 101.25 61.276 63.206 65.942 71.019 67.263 95 65 65 65 73 65 1 1 1 1 1 1 14409 16289 871 16088 24894 32247 32247 1 SIEDFAHSSFQMALSK Unmodified 1796.8403 0.84033482 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 8 0 1 69.733 69.733 3 0.00046205 21379 TMT1-7 71.697 45.332 84.806 85.15 101.65 71.263 131.21 74.074 80 87 102 73 131 73 1 1 1 1 1 1 10007 16290 307 16089 24895 32248 32248 1 SIEEQLGTEIKPIPSNIDK Unmodified 2110.1158 0.11576462 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 1 5 0 1 61.821 61.821 4 2.8875E-17 18607 TMT1-4 118.23 99.192 130.24 158.81 158.16 107.2 133.44 174.21 123 160 160 109 138 167 1 1 1 1 1 1 10289 16291 895 16090 24896 32249 32249 1 SIEIESSDVIR Acetyl (N-term) 1288.6511 0.65106071 1923 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 1 0 0 0 0 2 0 1 61.81 61.81 2 0.0039738 19578 TMT1-1 78.939 56.409 15.723 30.244 36.849 28.98 27.712 37.585 15 30 37 29 29 36 1 1 1 1 1 1 5031.2 16292 1923 16091 24897 32250 32250 1 SIEPYLK Unmodified 848.46437 0.46436956 834 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 0 6 0 1 51.442 51.442 2 0.0082628 14723 TMT1-5 117.93 20.866 235.55 401.92 466.51 351.2 420.89 493.27 224 400 469 354 434 474 1 1 1 1 1 1 34413 16293 834 16092 24898 32251 32251 1 SIEVENDFLPVEK Unmodified 1517.7613 0.76133944 2369 Q96B97;Q96B97-2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 4 0 1 66.963 66.963 2 6.4337E-08 20941 TMT1-3 124.86 83.668 54.202 64.963 32.431 52.744 56.69 45.286 51 65 36 51 58 44 1 1 1 1 1 1 9759.7 16294 2369 16093 24899 32252 32252 1 SIFANVEAK Unmodified 977.5182 0.51819605 1920 Q2M389-2;Q2M389 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 0 7 0 1 54.55 54.55 2 0.0031576 15322 TMT1-6 72.434 11.524 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16295 1920 16094 24900 32253 32253 1 SIFDFSALK Unmodified 1026.5386 0.53859714 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 9 0 2 74.561 74.561 2;3 0.00024583 21412 TMT1-8 121.09 58.433 191.94 215.68 198.98 151.78 190.8 210.95 181 218 203 153 196 203 2 2 2 2 2 2 73771 16296 1043 16095 24901;24902 32254;32255 32254 2 SIFDHIK Unmodified 858.45995 0.45995289 2785 Q9NYF8-4;Q9NYF8-3;Q9NYF8-2;Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 0 7.5 0.5 1 1 49.188 49.188 3 0.0043932 13224 TMT1-7 95.541 22.718 222.94 283.37 161.98 207.5 251.24 356.34 210 283 175 203 261 341 2 2 2 2 2 2 17494 16297 2785 16096 24903;24904 32256;32257 32257 2 SIFQHIQSAQSQR Unmodified 1528.7746 0.77463852 2976 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 0 9 0 1 41.217 41.217 3 5.5896E-10 8526 TMT1-8 119.96 87.643 30.524 54.505 53.425 35.437 38.639 45.801 29 54 54 36 40 44 1 1 1 1 1 1 9041.2 16298 2976 16097 24905 32258 32258 1 SIGATLTDVDDLIFK Unmodified 1606.8454 0.84540342 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 6 0 1 85.138 85.138 3 0.032541 27979 TMT1-5 41.838 13.205 38.251 43.799 26.172 53.54 34.168 29.939 36 44 29 51 36 29 1 1 1 1 1 1 2995.2 16299 2064 16098 24906 32259 32259 1 SIGDSVVIGDK Unmodified 1088.5714 0.57135383 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 5 0 1 53.116 53.116 2 9.7447E-07 15216 TMT1-4 143.39 115.18 92.267 108.24 90.482 95.784 83.242 97.829 87 109 94 94 87 94 1 1 1 1 1 1 8565.2 16300 1785 16099 24907 32260 32260 1 SIGESVPEPR Unmodified 1069.5404 0.54038805 3033 Q9Y5P6;Q9Y5P6-2 GMPPB Mannose-1-phosphate guanyltransferase beta yes no 0 0 0 0 0 2.5 0.5 1 1 40.495 40.495 2 0.000291 11476 TMT1-2 124.74 89.125 61.372 87.245 70.866 57.823 71.649 59.783 58 87 73 58 73 58 1 1 1 1 1 1 14840 16301 3033 16100 24908;24909 32261;32262 32262 2 SIIGVIPYFPYSK Unmodified 1482.8123 0.8122528 216 O60256-3;O60256;O60256-4;O60256-2 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 0 9 0 1 78.676 78.676 3 0.00013407 23002 TMT1-8 89.013 61.364 84.864 124.17 58.789 82.236 90.388 121.08 80 123 65 80 94 116 2 2 2 2 2 2 8514.6 16302 216 16101 24910 32263;32264 32263 2 SIIQEVAR Unmodified 914.51853 0.5185304 2427 Q96JJ7 TMX3 Protein disulfide-isomerase TMX3 yes yes 0 0 0 0 0 5 0 1 45.924 45.924 2 0.0045615 12395 TMT1-4 76.221 20.852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16303 2427 16102 24911 32265 32265 1 SIISMFDR Unmodified 967.4797 0.47970205 264 O75340-2;O75340 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 0 8 0 1 63.897 63.897 2 0.00048931 19082 TMT1-7 116.88 71.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16304 264 16103 24912 32266 32266 1 SIITYVSSLYDAMPR Unmodified 1714.86 0.86000763 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 85.544 85.544 3 2.7229E-16 25739 TMT1-8 125.97 91.672 30.748 20.589 44.6 36.308 20.302 30.335 29 22 44 36 22 29 1 1 1 1 1 1 8605 16305 1833 16104 24913 32267 32267 1 SIKDTICNQDER Unmodified 1477.6831 0.6831059 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 1 5 0 1 40.197 40.197 3 0.00027964 10117 TMT1-4 94.717 76.916 1246.4 1522.1 1494.4 1303.6 1558.4 1794.4 1177 1533 1525 1301 1606 1725 1 1 1 1 1 1 171140 16306 2913 16105 24914 32268 32268 1 SILASPLGFYTALR Unmodified 1507.8399 0.83986454 1774 Q14392 LRRC32 Leucine-rich repeat-containing protein 32 yes yes 0 0 0 0 0 9 0 1 77.184 77.184 2 0.0050202 22488 TMT1-8 64.121 34.378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16307 1774 16106 24915 32269 32269 1 SILCCLR Unmodified 920.45719 0.45719247 1835 Q15185-3;Q15185-4;Q15185 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 0 8.5 0.5 1 1 50.602 50.602 2 0.0049812 13805 TMT1-7 135.5 79.6 331.07 374.77 304.75 389.05 374.05 435.98 312 378 320 379 389 419 2 2 2 2 2 2 65521 16308 1835 16107 24916;24917 32270;32271 32270 2 SILDEFKK Unmodified 978.5386 0.53859714 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 1 7 0 1 57.318 57.318 3 0.0066185 16395 TMT1-6 88.177 50.365 176.54 271.78 215.28 222.07 295.71 260.19 167 270 224 220 301 252 1 1 1 1 1 1 15865 16309 750 16108 24918 32272 32272 1 SILENLR Unmodified 843.48142 0.48141661 438 P02675;CON__P02676 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 50.807 50.807 2 3.5533E-06 13773 TMT1-6 166.86 17.873 8925.8 11894 9296.7 7547.2 10576 14270 8426 11890 9604 7594 10911 13670 9 9 9 9 9 9 2111900 16310 438 16109 24919;24920;24921;24922;24923 32273;32274;32275;32276;32277;32278;32279;32280;32281 32279 9 SILGTLTVEQIYQDRDQFAK Unmodified 2324.2012 0.20122559 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 1 7 0 1 70.798 70.798 4 2.6612E-13 21737 TMT1-6 106.93 93.097 84.771 92.608 101.18 71.784 104.96 167.56 80 94 102 73 109 160 1 1 1 1 1 1 16006 16311 1767 16110 24924 32282 32282 1 SILLGLLLGAGR Unmodified 1181.7496 0.74959297 1216 P50336 PPOX Protoporphyrinogen oxidase yes yes 0 0 0 0 0 9 0 1 87.782 87.782 2 6.4011E-06 26582 TMT1-8 99.815 50.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16312 1216 16111 24925 32283 32283 1 SILLSVPLLVVDNK Unmodified 1508.9178 0.91778051 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 9 0 1 86.105 86.105 3 3.5864E-10 25897 TMT1-8 113.76 95.893 92.294 100.76 92.339 88.45 60.508 99.543 87 102 95 87 65 95 2 2 2 2 2 2 12726 16313 1287 16112 24926 32284;32285 32284 2 SILPTAPR Unmodified 853.50215 0.50215205 866 P23588-2;P23588 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 0 7 0 1 44.78 44.78 2 0.015577 11468 TMT1-6 92.47 47.749 108.2 130.45 98.111 87.125 112.65 136.43 102 131 102 87 116 131 1 1 1 1 1 1 8219.5 16314 866 16113 24927 32286 32286 1 SILSELK Unmodified 788.46437 0.46436956 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 58.333 58.333 2 1.5005E-07 16816 TMT1-6 139.31 18.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16315 2717 16114 24928 32287 32287 1 SILSPGGSCGPIK Unmodified 1271.6544 0.65437195 1502 P78347-2;P78347-4;P78347-3;P78347;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 0 8 0 1 52.348 52.348 3 0.00070891 14533 TMT1-7 58.098 36.467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16316 1502 16115 24929 32288 32288 1 SILTDNPTWIIDPIDGTTNFVHR Unmodified 2624.3235 0.32346599 935 P29218;P29218-3;P29218-2 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 0 0 6 0 1 79.688 79.688 3 6.49E-07 25833 TMT1-5 65.753 41.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16317 935 16116 24930 32289 32289 1 SILYDER Unmodified 894.4447 0.44469675 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 0 4 0 1 42.161 42.161 2 0.010552 11143 TMT1-3 107.59 30.098 115.5 175.75 95.689 79.657 110.61 205.78 109 174 102 80 116 196 1 1 1 1 1 1 28866 16318 891 16117 24931 32290 32290 1 SILYVVEEPECPK Unmodified 1561.7698 0.76979564 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 5 0 1 64.095 64.095 3 9.4626E-05 19491 TMT1-4 92.856 76.493 61.267 79.398 95.177 32.739 49.767 60.408 58 80 94 36 51 58 1 1 1 1 1 1 15275 16319 484 16118 24932 32291 32291 1 SINAGGHK Unmodified 782.4035 0.40350064 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 8 1 1 1 26.092 26.092 3 0.0069312 4222 TMT1-8 66.299 16.709 61.749 41.882 46.055 44.335 53.826 48.566 58 44 47 44 55 47 2 2 2 2 2 2 3586.4 16320 1119 16119 24933;24934 32292;32293 32293 2 SINPDEAVAYGAAVQAAILMGDK Unmodified 2303.1467 0.14674718 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 7.33 0.471 2 1 87.866 87.866 3;4 5.056E-13 28290 TMT1-7 99.064 90.877 132.45 173.97 133.75 124.36 170.29 205.14 125 174 139 124 175 197 5 5 5 5 5 5 25157 16321 618 16120 24935;24936;24937 32294;32295;32296;32297;32298 32297 5 SINPDEAVAYGAAVQAAILSGDK Unmodified 2259.1383 0.13829098 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 7 0.894 2 1 2 83.99 83.99 3;4 2.8122E-29 26922 TMT1-6 137.04 130.14 424.73 546.62 467.58 475.14 510.64 577.06 401 548 484 469 528 555 10 10 10 10 10 10 138070 16322 641 16121 24938;24939;24940;24941;24942 32299;32300;32301;32302;32303;32304;32305;32306;32307;32308 32304 10 SINSILDYISTSK Unmodified 1439.7508 0.75077476 1382 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 0 9 0 1 77.967 77.967 3 9.1111E-05 22761 TMT1-8 91.812 78.832 61.478 63.795 72.94 42.833 48.497 83.896 58 65 73 44 51 80 1 1 1 1 1 1 11337 16323 1382 16122 24943 32309 32309 1 SINTEVVACSVDSQFTHLAWINTPR Unmodified 2844.3865 0.38647695 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 0 7 0 1 74.037 74.037 4 0.015805 23013 TMT1-6 35.678 16.634 61.32 110.84 59.679 82.863 54.242 76.27 58 109 65 80 58 73 1 1 1 1 1 1 8224.3 16324 1679 16123 24944 32310 32310 1 SINVLIR Unmodified 813.50724 0.50723743 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 8.5 0.5 1 1 50.878 50.878 2 0.0071249 13980 TMT1-7 130 12.38 1328.7 1792.3 1676 1225.8 1694.1 1967.5 1256 1795 1705 1242 1738 1891 3 3 3 3 3 3 322180 16325 1684 16124 24945;24946 32311;32312;32313 32312 3 SIPAYLAETLYYAMK Oxidation (M) 1748.8695 0.86950968 578 P08758 ANXA5 Annexin A5 yes yes 0 0 1 0 0 8 0 1 81.636 81.636 3 0.0023579 25959 TMT1-7 69.92 51.324 46.664 58.924 42.226 36.184 34.417 45.922 44 59 44 36 36 44 1 1 1 1 1 1 5065.2 16326 578 16125 24947 32314 32314 107 1 SIPAYLAETLYYAMK Unmodified 1732.8746 0.87459506 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 9 0 1 92.122 92.122 3 1.0906E-16 28164 TMT1-8 131.53 98.8 229.96 319.26 214.34 197.4 215.33 318.99 217 318 225 196 225 305 3 3 3 3 3 3 39192 16327 578 16125 24948 32315;32316;32317 32316 3 SIPDGSEK Unmodified 831.39741 0.39741221 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 4 0 1 37.389 37.389 2 0.003928 9365 TMT1-3 128.69 65.207 420.48 531.91 473.42 485.97 497.69 574.23 397 534 489 479 516 552 2 2 2 2 2 2 64582 16328 787 16126 24949 32318;32319 32319 2 SIPICTLK Unmodified 930.52084 0.52083858 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 8.5 0.5 1 1 54.283 54.283 2 0.0064109 15324 TMT1-7 105.57 33.429 488.93 584.86 466.96 430.4 567.05 486.97 461 588 484 429 577 472 3 3 3 3 3 3 74994 16329 845 16127 24950;24951 32320;32321;32322 32320 3 SIPLDEGEDEAQR Unmodified 1457.6634 0.66341631 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 2 0 1 45.203 45.203 3 4.3197E-08 13024 TMT1-1 98.942 77.069 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16330 1763 16128 24952 32323 32323 1 SIPMTVDFIR Unmodified 1177.6165 0.61652988 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 7.5 0.5 1 1 66.145 66.145 2 0.014267 19884 TMT1-6 78.816 22.269 162.52 179.54 124.95 92.487 149.29 158.84 153 181 130 94 152 153 2 2 2 2 2 2 22329 16331 395 16129 24953;24954 32324;32325 32324 2 SIPQPTNALK Unmodified 1067.5975 0.597509 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 0 7 0 1 48.219 48.219 2 0.0042513 12829 TMT1-6 93.556 47.427 30.654 51.627 34.08 36.369 50.407 36.938 29 51 36 36 51 36 1 1 1 1 1 1 5406.8 16332 3011 16130 24955 32326 32326 1 SIQADGLVWGSSK Unmodified 1346.683 0.68302954 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 7 0 2 59.921 59.921 2;3 1.8619E-12 17406 TMT1-6 155.98 112.81 483.81 707.16 682.2 486.49 679.92 780.1 458 706 692 494 697 750 3 3 3 3 3 3 162560 16333 874 16131 24956;24957 32327;32328;32329 32329 3 SIQCLTVHK Unmodified 1084.5699 0.56991404 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 8.33 0.471 2 1 42.619 42.619 2;3 0.0012733 10622 TMT1-7 121.83 60.857 400.65 498.16 408.02 349.97 439.11 421.33 378 500 421 350 449 407 4 4 4 4 4 4 303780 16334 250 16132 24958;24959;24960 32330;32331;32332;32333 32330 4 SIQEAPVSEDLVIR Unmodified 1554.8253 0.82533668 1963 Q5JTV8 TOR1AIP1 Torsin-1A-interacting protein 1 yes yes 0 0 0 0 0 3 0 1 57.856 57.856 2 7.3543E-05 18345 TMT1-2 96.756 63.347 30.847 28.42 21.3 14.449 35.966 29.888 29 29 22 15 36 29 1 1 1 1 1 1 4139.2 16335 1963 16133 24961 32334 32334 1 SIQEELQQLR Unmodified 1242.6568 0.65681479 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 56.945 56.945 2 0.01035 16951 TMT1-3 83.775 42.893 123.98 191.06 100.23 126.08 126.56 136.03 117 189 109 123 131 131 2 2 2 2 2 2 28167 16336 1833 16134 24962 32335;32336 32335 2 SIQEIQELDKDDESLR Unmodified 1916.9327 0.93271488 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 1 3 0.816 1 1 1 55.613 55.613 3 1.52E-28 17434 TMT1-2 183.73 157.36 1784.5 2315.7 1811.8 1524.9 2035.6 2342.5 1684 2318 1874 1529 2090 2252 8 8 8 8 8 8 285140 16337 1268 16135 24963;24964;24965 32337;32338;32339;32340;32341;32342;32343;32344 32342 8 SIQFHWK Unmodified 944.48684 0.48683634 417 P01730 CD4 T-cell surface glycoprotein CD4 yes yes 0 0 0 0 0 9 0 1 50.56 50.56 3 0.015729 12030 TMT1-8 62.464 21.435 61.153 134.12 68.033 58.318 54.308 107.18 58 131 73 58 58 102 1 1 1 1 1 1 6492.7 16338 417 16136 24966 32345 32345 1 SIQFVDWCPTGFK Unmodified 1583.7442 0.74424959 1491;1492 P68363;P68363-2;P68366-2;P68366 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 0 0 0 0 0 6 3.56 1 1 1 73.435 73.435 3 2.4734E-06 20861 TMT1-8 102.73 74.434 4049.8 5196.7 4024.8 3673.2 3768.4 5849.3 3821 5204 4178 3645 3956 5588 8 8 8 8 8 8 846500 16339 1491;1492 16137 24967;24968;24969 32346;32347;32348;32349;32350;32351;32352;32353 32351 8 SIQGHHVCLLVK Unmodified 1389.7551 0.75508905 97 O14617-4;O14617;O14617-5;O14617-3;O14617-2 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 0 8 0 1 41.041 41.041 4 0.00053976 10057 TMT1-7 80.69 56.704 84.578 115.82 113.97 93.521 129.12 105.05 80 116 116 94 131 102 1 1 1 1 1 1 8106.7 16340 97 16138 24970 32354 32354 1 SIQLDGLVWGASK Unmodified 1372.7351 0.73506511 941 P29692;P29692-2;P29692-3;P29692-4 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 8 0 1 71.299 71.299 3 8.021E-05 22040 TMT1-7 94.781 59.577 247.62 332.6 299.75 300.51 332.05 376.42 234 333 309 297 343 362 2 2 2 2 2 2 58932 16341 941 16139 24971 32355;32356 32356 2 SIQSGPLK Unmodified 828.47052 0.47051757 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 7 0 1 41.918 41.918 2 0.0066364 10320 TMT1-6 104.2 26.275 123.13 144.25 103.39 118.41 118.03 151.2 116 145 109 116 123 145 1 1 1 1 1 1 10709 16342 1913 16140 24972 32357 32357 1 SIQVDGK Unmodified 745.39702 0.39701828 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 5.5 0.5 1 1 40.076 40.076 3 0.013297 10185 TMT1-5 76.035 42.677 237.87 339.48 309.77 188.82 369.36 352.97 225 339 314 196 373 341 2 2 2 2 2 2 19611 16343 1880 16141 24973;24974 32358;32359 32359 2 SIRPGLSPYR Unmodified 1144.6353 0.63529149 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 9 0 1 37.013 37.013 3 0.01477 7024 TMT1-8 57.203 22.25 61.213 71.691 110.89 54.736 108.93 74.71 58 73 109 58 109 73 1 1 1 1 1 1 8116.9 16344 1792 16142 24975 32360 32360 1 SISAALEHK Unmodified 954.51345 0.51344502 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 6 0 1 40.891 40.891 3 0.0038201 10551 TMT1-5 78.149 34.341 46.433 80.947 62.31 65.75 84.074 113.79 44 80 65 65 87 109 1 1 1 1 1 1 4560.8 16345 463 16143 24976 32361 32361 1 SISLSSLEPR Unmodified 1087.5873 0.58733824 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 6 0 1 55.966 55.966 2 0.00067358 16568 TMT1-5 110.22 63.383 107.36 214.44 169.11 153.41 198.82 188.34 102 211 175 153 203 182 2 2 2 2 2 2 10565 16346 2061 16144 24977 32362;32363 32363 2 SISQEQEKR Unmodified 1103.5571 0.55710075 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 1 4 0 1 26.869 26.869 3 0.009285 5133 TMT1-3 74.165 53.014 46.838 50.774 19.868 14.677 28.37 37.566 44 51 22 15 29 36 1 1 1 1 1 1 2097.6 16347 2245 16145 24978 32364 32364 1 SISQQSGAR Unmodified 932.46756 0.46755746 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 5 0 1 23.242 23.242 2 0.0015543 3840 TMT1-4 117.81 70.068 10.642 9.8143 6.4699 10.361 9.7373 7.1841 10 10 7 10 10 7 1 1 1 1 1 1 1206.8 16348 2361 16146 24979 32365 32365 1 SISSDEVNFLVYR Acetyl (Protein N-term) 1569.7675 0.76748745 2586 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 0 1 0 0 0 3 0 1 77.314 77.314 2 2.7518E-13 25910 TMT1-2 100.48 80.715 0 23.408 0 7.651 0 0 0 22 0 7 0 0 0 1 0 1 0 0 3136.6 16349 2586 16147 24980 32366 32366 1 SITHDIEEK Unmodified 1070.5244 0.52440364 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 4 0 1 38.377 38.377 3 8.2878E-05 9634 TMT1-3 138.08 81.35 231.39 271.62 194.32 200.74 217.67 246.43 218 273 204 198 225 237 1 1 1 1 1 1 48883 16350 2864 16148 24981 32367 32367 1 SITIIGGGFLGSELACALGR Unmodified 1991.051 0.050996298 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 9 0 1 86.896 86.896 3 1.3616E-08 26217 TMT1-8 74.269 46.407 77.824 40.727 50.355 44.697 20.962 53.768 73 44 51 44 22 51 2 2 2 2 1 2 6591.5 16351 373 16149 24982 32368;32369 32368 2 SITLFVQEDR Unmodified 1206.6245 0.62445203 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 0.5 2 2 58.992 58.992 2;3 5.2831E-07 17672 TMT1-5 157.78 109.49 522.12 602 643.98 534.69 679.1 739.61 493 609 653 536 697 712 5 5 5 5 5 5 869640 + 16352 32;554 16150 24983;24984;24985;24986 32370;32371;32372;32373;32374 32372 5 SITNTTVCTK Unmodified 1123.5543 0.55432356 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 SF1 Splicing factor 1 yes no 0 0 0 0 0 7 0 1 40.317 40.317 2 0.00042316 9697 TMT1-6 118.23 49.498 38.133 58.58 33.561 37.795 34.343 45.924 36 58 36 37 36 44 1 1 1 1 1 1 5311.3 16353 1866 16151 24987 32375 32375 1 SIVDNWPENHVK Unmodified 1436.7048 0.70482762 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 6 0 1 48.189 48.189 3 2.1473E-06 13398 TMT1-5 115.57 84.096 384.45 541.05 390.25 425.76 417.45 524.29 363 539 410 418 435 503 2 2 2 2 2 2 31353 16354 859 16152 24988 32376;32377 32377 2 SIVDYKPNLDLLEQQHQLIQEALIFDNK Unmodified 3323.7402 0.74015708 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 7.67 0.471 1 2 81.377 81.377 4;5 1.3116E-16 25801 TMT1-6 96.793 85.408 392.37 531.97 328.72 312.44 477.45 482.07 370 530 348 312 486 465 4 4 4 4 4 4 139360 16355 195 16153 24989;24990;24991 32378;32379;32380;32381 32378 4 SIVEEEEDDDYVELK Unmodified 1810.7996 0.79963502 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 2 0 1 62.052 62.052 3 1.379E-07 19639 TMT1-1 105.14 86.544 30.617 59.08 33.96 29.014 35.04 37.376 29 58 36 29 36 36 1 1 1 1 1 1 5684.5 16356 1229 16154 24992 32382 32382 1 SIVEEIEDLVAR Unmodified 1371.7246 0.72456001 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 3.5 0.5 1 1 87.805 87.805 2 1.6122E-08 29340 TMT1-2 144.17 96.597 142.79 193.74 182.08 153.26 165.49 154.11 135 194 186 153 170 149 5 5 5 5 5 5 19390 16357 479 16155 24993;24994 32383;32384;32385;32386;32387 32384 5 SIVGMTK Unmodified 734.39966 0.39966081 235 O60749-2;O60749 SNX2 Sorting nexin-2 yes no 0 0 0 0 0 8 0 1 45.885 45.885 2 0.038681 11938 TMT1-7 86.794 35.106 122.62 181.69 157.15 99.904 117.81 182.12 116 181 160 102 123 174 1 1 1 1 1 1 12315 16358 235 16156 24995 32388 32388 1 SIVNYKPK Unmodified 947.54402 0.54401687 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 9 0 2 42.657 42.657 3 0.0014068 8766 TMT1-8 101.64 49.789 6348.7 8145.3 8293.7 5965.6 7481.8 8779.3 6001 8188 8392 6039 7703 8436 4 4 4 4 4 4 614790 16359 672 16157 24996;24997 32389;32390;32391;32392 32389 4 SIVSELAGLLSAMEYVQK Unmodified 1937.018 0.017964835 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 9 0 1 104.09 104.09 3 2.3641E-14 32436 TMT1-8 112.36 82.896 70.247 64.801 41.046 52.072 65.097 45.046 66 66 44 51 66 44 2 2 2 2 2 2 8162.1 16360 1073 16158 24998 32393;32394 32393 2 SIWAFGPDATGPNILVDDTLPSEVDK Unmodified 2756.3545 0.35449135 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 6 0 1 86.399 86.399 3 3.1563E-05 28427 TMT1-5 55.994 43.317 23.146 59.705 26.683 22.357 5.2384 30.765 22 58 29 22 7 29 1 1 1 1 1 1 5180.5 16361 1816 16159 24999 32395 32395 1 SIWYAFTALDVEK Unmodified 1541.7766 0.77659558 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 0 8 0 1 83.469 83.469 3 0.0076481 26774 TMT1-7 59.185 39.607 30.733 35.658 34.287 53.205 26.305 46.153 29 36 36 51 29 44 1 1 1 1 1 1 5451.7 16362 2651 16160 25000 32396 32396 1 SIYAVFESDVNLK Unmodified 1483.7559 0.75586013 749 P16671;P16671-3;P16671-4 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 6.4 0.49 3 2 73.09 73.09 2;3 1.2039E-21 22639 TMT1-6 179.98 140.98 568.36 622.88 609.19 626.46 675.63 687.48 536 631 626 618 696 663 7 7 7 7 7 7 168670 16363 749 16161 25001;25002;25003;25004;25005 32397;32398;32399;32400;32401;32402;32403;32404 32403 8 SIYGEKFEDENFILK Unmodified 1830.904 0.90398093 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 1 5 1.77 1 3 2 1 65.258 65.258 3;4 5.3476E-17 19914 TMT1-4 145.43 118.28 4837.1 7423.4 5066.7 4836.9 4959.7 7492.1 4571 7363 5316 4787 5200 7161 11 11 11 11 11 11 1167200 16364 1461 16162 25006;25007;25008;25009;25010;25011;25012 32405;32406;32407;32408;32409;32410;32411;32412;32413;32414;32415 32406 11 SIYGERFPDENFK Unmodified 1600.7522 0.75217174 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 1 5 0 1 52.569 52.569 3 0.00058155 15028 TMT1-4 83.617 71.057 115.27 178.34 132.82 117.09 94.486 198.78 109 177 138 116 102 189 1 1 1 1 1 1 14708 16365 858 16163 25013 32416 32416 1 SIYYITGESK Unmodified 1159.5761 0.57610486 561;1955 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 0 6.33 0.471 2 1 53.682 53.682 2;3 4.2785E-05 14959 TMT1-6 147.75 102.07 244.78 386.95 369.84 305.83 291.98 378.63 232 385 377 305 305 363 3 3 3 3 3 3 165550 16366 561;1955 16164 25014;25015;25016 32417;32418;32419 32419 3 SKADSHGSGSQK Phospho (STY) 1267.5194 0.51940841 1938 Q4G0P3 HYDIN Hydrocephalus-inducing protein homolog yes yes 0 0 0 1 1 9 0 1 85.366 85.366 2 0.019269 25654 TMT1-8 45.997 15.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16367 1938 16165 25017 32420 32420 6 1 SKAEELGLPILGVLR Unmodified 1593.9454 0.94539224 582 P09110 ACAA1 3-ketoacyl-CoA thiolase, peroxisomal yes yes 0 0 0 0 1 8 0 1 70.772 70.772 3 2.5929E-05 21791 TMT1-7 77.325 55.767 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16368 582 16166 25018 32421 32421 1 SKAEEWGVQYVETSAK Unmodified 1810.8737 0.87374344 650 P11234;P11234-2;P11234-3 RALB Ras-related protein Ral-B yes no 0 0 0 0 1 6 0 2 54.708 54.708 3;4 6.3124E-08 16001 TMT1-5 90.422 55.468 222.42 265.75 263.63 256.82 270.66 303.55 210 268 270 254 280 292 2 2 2 2 2 2 33785 16369 650 16167 25019;25020 32422;32423;32424 32424 3 SKDDQVTVIGAGVTLHEALAAAELLK Unmodified 2648.4385 0.43849575 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 7.5 0.5 2 2 79.673 79.673 4;5 1.3008E-36 25146 TMT1-7 140.55 120.11 569.13 815.33 677.26 612.27 749.34 783.45 538 813 699 610 769 755 9 9 9 9 9 9 123210 16370 937 16168 25021;25022;25023;25024 32425;32426;32427;32428;32429;32430;32431;32432;32433 32432 9 SKDHFGLEGDEESTMLEDSVSPK Unmodified 2536.1275 0.12752788 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 1 1 1 56.093 56.093 4 5.5367E-09 16718 TMT1-3 79.762 52.559 352.92 420.96 381.46 351.25 397 610.15 333 424 392 349 415 583 3 3 3 3 3 3 143230 16371 3010 16169 25025;25026 32434;32435;32436 32434 3 SKDIALHLNPR Unmodified 1262.7095 0.70951906 52 O00214;O00214-2 LGALS8 Galectin-8 yes no 0 0 0 0 1 8 0 1 39.729 39.729 4 0.0058248 9508 TMT1-7 68.536 45.107 92.061 122.78 112.77 110.34 110.26 174.88 87 123 116 109 116 167 1 1 1 1 1 1 7156.5 16372 52 16170 25027 32437 32437 1 SKDSLVDIIGICK Unmodified 1446.7752 0.77521537 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 1 8 0 1 64.502 64.502 3 0.00058671 19323 TMT1-7 83.511 51.384 153.01 299.49 179.76 183.25 205.94 245.7 145 294 191 181 213 236 1 1 1 1 1 1 14052 16373 913 16171 25028 32438 32438 1 SKEFQLFSSPHGK Unmodified 1490.7518 0.75177781 451 P02787 TF Serotransferrin yes yes 0 0 0 0 1 9 0 1 46.346 46.346 4 0.00079186 10347 TMT1-8 78.486 44.538 107.51 159.83 189.31 113.59 101.87 201.77 102 160 189 116 109 192 1 1 1 1 1 1 5209.2 16374 451 16172 25029 32439 32439 1 SKEITVR Unmodified 831.48142 0.48141661 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 1 6 0 1 31.586 31.586 3 0.015033 6791 TMT1-5 84.743 11.954 138.51 227.52 152.24 146.52 153.6 204.55 131 225 160 145 160 196 1 1 1 1 1 1 8727.4 16375 764 16173 25030 32440 32440 1 SKENISLLEK Unmodified 1159.6449 0.64485312 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 1 7 0 1 48.25 48.25 3 0.039722 12847 TMT1-6 53.6 2.9251 130.67 136.27 104.53 102.58 142.3 135.59 123 138 109 102 145 131 1 1 1 1 1 1 7259.1 16376 1825 16174 25031 32441 32441 1 SKEQAELEAAR Unmodified 1230.6204 0.62042929 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 4 0 1 33.725 33.725 3 0.0010344 7826 TMT1-3 91.093 76.936 258.79 445.52 310.25 251.33 298.47 414.68 245 440 323 252 310 397 1 1 1 1 1 1 26003 16377 1833 16175 25032 32442 32442 1 SKESVPEFPLSPPK Unmodified 1540.8137 0.81370936 752 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 1 7 0 1 54.844 54.844 4 0.00090905 15410 TMT1-6 73.887 53.224 199.6 335.56 252.85 237.4 291.35 275.24 189 332 263 236 298 266 1 1 1 1 1 1 19810 16378 752 16176 25033 32443 32443 1 SKGDDATLPSFR Unmodified 1292.6361 0.63607935 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 1 6 0 1 43.474 43.474 3 0.0059099 11549 TMT1-5 68.262 32.302 266.55 295.5 215.05 282.26 176.31 367 251 298 228 273 193 349 1 1 1 1 1 1 29238 16379 2172 16177 25034 32444 32444 1 SKGGEGGELQVWIK Unmodified 1486.778 0.77799256 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 1 7 0 1 53.837 53.837 3 0.0012981 15062 TMT1-6 74.257 46.921 107.85 129.45 158.98 130.96 146.2 197.3 102 131 160 131 152 189 1 1 1 1 1 1 14791 16380 2378 16178 25035 32445 32445 1 SKGGVVGIK Unmodified 843.5178 0.51780212 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 1 5 4 1 1 39.196 39.196 3 0.031721 7687 TMT1-8 63.32 12.688 122.9 161.97 126.41 112.01 94.663 169.99 116 162 131 111 101 162 1 1 1 1 1 1 6456.5 16381 459 16179 25036;25037 32446;32447 32447 2 SKGPQQIHLK Unmodified 1134.6509 0.65094155 2737 Q9NS28 RGS18 Regulator of G-protein signaling 18 yes yes 0 0 0 0 1 8 0 1 35.46 35.46 4 0.034516 7841 TMT1-7 51.092 25.875 310.55 395.23 309.51 281.37 272.98 477.24 293 396 321 279 289 455 1 1 1 1 1 1 7965.5 16382 2737 16180 25038 32448 32448 1 SKGQSSLALHK Unmodified 1154.6408 0.6407708 650 P11234;P11234-2;P11234-3 RALB Ras-related protein Ral-B yes no 0 0 0 0 1 9 0 1 34.454 34.454 4 0.00010654 6264 TMT1-8 100.55 58.57 178.66 231.61 254.46 198.01 230.5 241.8 169 233 257 199 237 233 1 1 1 1 1 1 12319 16383 650 16181 25039 32449 32449 1 SKGYAFIEFASFEDAK Unmodified 1808.8621 0.86211612 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 7 0 1 68.071 68.071 3 0.0069143 20649 TMT1-6 55.33 46.167 46.364 73.201 80.43 33.762 42.135 68.088 44 73 80 36 44 65 1 1 1 1 1 1 9745.1 16384 786 16182 25040 32450 32450 1 SKHEEEAVQK Unmodified 1183.5833 0.5833155 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 1 4 0 1 27.589 27.589 4 0.0016405 5440 TMT1-3 88.441 50.719 77.297 94.305 93.478 48.974 63.679 60.011 73 95 94 51 65 58 1 1 1 1 1 1 3157.9 16385 2631 16183 25041 32451 32451 1 SKIETEIK Unmodified 946.53351 0.53351176 2678 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 0 0 0 0 1 6 0 1 39.997 39.997 3 0.0070908 10168 TMT1-5 88.681 28.162 881.91 1133.8 858.67 690.34 1021.6 1158.4 832 1135 889 696 1045 1114 1 1 1 1 1 1 56072 16386 2678 16184 25042 32452 32452 1 SKINVNEIFYDLVR Unmodified 1708.9148 0.91482039 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 1 8.5 0.5 1 1 73.747 73.747 3 6.1903E-17 22984 TMT1-7 149.3 130.09 2514 2958.2 2002.3 2081.4 1654.7 3858.6 2368 2971 2112 2042 1800 3664 4 4 4 4 4 4 307680 16387 1384;1447 16185 25043;25044 32453;32454;32455;32456 32453 4 SKLEDIANAALAASAVTQVAK Unmodified 2070.1321 0.13208339 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 1 9 0 2 75.236 75.236 3;4 5.2582E-13 21722 TMT1-8 88.79 64.991 160.54 255.89 211.95 174.27 174.32 203.96 152 254 218 174 181 196 3 3 3 3 3 3 11093 16388 2273 16186 25045;25046 32457;32458;32459 32459 3 SKLPNSVLGK Unmodified 1041.6182 0.61824444 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 1 9 0 1 46.234 46.234 3 0.0011037 10273 TMT1-8 90.697 37.014 711.62 1066.5 862.66 710.79 851.46 1150.4 673 1061 889 712 883 1102 2 2 2 2 2 2 83450 16389 2802 16187 25047 32460;32461 32460 2 SKLPNTVLGK Unmodified 1055.6339 0.63389451 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 9 0 1 46.557 46.557 3 0.0013975 10447 TMT1-8 86.911 51.4 845.5 1174.5 993.07 853.24 1057.9 1374.8 799 1173 1022 853 1094 1318 1 1 1 1 1 1 61975 16390 2654 16188 25048 32462 32462 1 SKPAVQYQWDR Unmodified 1376.6837 0.68369824 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 1 7 0 1 42.359 42.359 3 0.0024843 10473 TMT1-6 82.705 61.135 107.84 160.75 132.88 140.33 137.67 219.93 102 160 138 138 145 210 1 1 1 1 1 1 20382 16391 2363 16189 25049 32463 32463 1 SKPGAAMVEMADGYAVDR Unmodified 1866.8604 0.86041834 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 1 5 0 1 53.994 53.994 3 0.002744 15605 TMT1-4 54.857 45.603 38.006 65.783 48.717 52.216 33.167 60.882 36 65 51 51 36 58 1 1 1 1 1 1 12437 16392 713 16190 25050 32464 32464 1 SKPNLLK Unmodified 798.49634 0.49633839 3053 Q9Y6D6;Q9Y6D5 ARFGEF1;ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 1;Brefeldin A-inhibited guanine nucleotide-exchange protein 2 yes no 0 0 0 0 1 9 0 1 40.759 40.759 3 0.045296 8435 TMT1-8 51.787 14.312 99.62 131.03 97.763 95.104 96.304 175.27 94 131 102 94 102 167 1 1 1 1 1 1 7302.5 16393 3053 16191 25051 32465 32465 1 SKPPAPNPTPPR Unmodified 1257.683 0.68296996 1130 P46734-2 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes yes 0 0 0 0 1 8 0 1 32.286 32.286 3 0.0035681 6639 TMT1-7 73.877 48.66 30.546 35.138 66.168 42.64 80.189 44.616 29 36 65 44 80 44 1 1 1 1 1 1 4350.6 16394 1130 16192 25052 32466 32466 1 SKPSSPVVSEK Unmodified 1143.6136 0.61355299 320 O75995 SASH3 SAM and SH3 domain-containing protein 3 yes yes 0 0 0 0 1 7 0 1 36.225 36.225 3 0.00039161 8064 TMT1-6 99.844 86.181 84.778 101.26 92.719 55.81 109.43 58.705 80 102 94 58 109 58 1 1 1 1 1 1 6878.9 16395 320 16193 25053 32467 32467 1 SKQLEDELVSLQK Unmodified 1515.8144 0.81443765 593 P09493-3;P09493-10 no no 0 0 0 0 1 6 0 2 57.185 57.185 3;4 0.00033278 16970 TMT1-5 85.258 63.061 168.82 294.38 230.66 211.59 223.05 318.77 160 291 239 210 233 305 2 2 2 2 2 2 19685 16396 593 16194 25054;25055 32468;32469 32468 2 SKSDPIMLLK Unmodified 1130.6369 0.63693097 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 1 8 0 1 55.789 55.789 3 0.010597 15913 TMT1-7 70.488 34.529 177.1 248.51 140.74 177.82 211.46 244.48 167 247 152 174 218 235 1 1 1 1 1 1 12943 16397 566 16195 25056 32470 32470 1 SKTPEIYLAYR Unmodified 1339.7136 0.71360139 2237 Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 yes no 0 0 0 0 1 7 0 1 48.765 48.765 3 0.0090489 13030 TMT1-6 68.034 44.429 115.23 167.44 147.96 132.02 124.46 189.39 109 167 152 131 131 181 1 1 1 1 1 1 14984 16398 2237 16196 25057 32471 32471 1 SKVDEAVAVLQAHQAK Unmodified 1692.9159 0.91588303 662;2634 P11940-2;P11940;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 no no 0 0 0 0 1 7.5 0.5 1 1 53.174 53.174 3;4 9.5883E-05 14912 TMT1-7 67.685 48.132 153.72 204.34 140.55 122.85 170.86 221.12 145 204 147 123 176 212 1 1 1 1 1 1 17615 16399 662;2634 16197 25058;25059 32472;32473 32473 2 SKVDQVQDIVTGNPTVIK Unmodified 1940.0579 0.057855815 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 7 0 1 58.375 58.375 3 0.0023406 16834 TMT1-6 50.868 40.365 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16400 1723 16198 25060 32474 32474 1 SKVELEVR Unmodified 958.54475 0.54474515 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 5.5 0.5 1 1 38.001 38.001 3 0.0048968 9196 TMT1-4 94.409 34.478 13829 18314 16262 12530 15358 20605 13064 18344 16625 12615 15909 19740 3 3 3 3 3 3 1267800 16401 484 16199 25061;25062 32475;32476;32477 32475 3 SKVPQETQSGGGSR Unmodified 1416.6957 0.69571949 1797 Q14766;Q14766-4 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 6 0 1 26.225 26.225 3 0.0048177 4847 TMT1-5 64.499 45.641 54.118 73.362 39.517 76.704 38.804 107.62 51 73 44 73 44 102 1 1 1 1 1 1 6010 16402 1797 16200 25063 32478 32478 1 SKWDESIFTK Unmodified 1239.6136 0.61355299 2230 Q8NG11;Q8NG11-2;Q8NG11-3 TSPAN14 Tetraspanin-14 yes no 0 0 0 0 1 8 0 1 56.247 56.247 3 0.029737 16072 TMT1-7 58.098 45.953 253.97 242.15 211.26 197.75 206.41 212.64 239 247 218 196 213 205 1 1 1 1 1 1 12949 16403 2230 16201 25064 32479 32479 1 SKYTTPSGEVR Unmodified 1223.6146 0.61461563 1324 P55786;P55786-2;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 1 6 0 1 31.681 31.681 3 0.010869 6884 TMT1-5 66.004 36 92.099 122.89 106.22 87.207 82.574 128.76 87 123 109 87 87 123 1 1 1 1 1 1 7738.1 16404 1324 16202 25065 32480 32480 1 SLAAEEEAAR Unmodified 1045.504 0.50400254 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 35.701 35.701 2 0.00010724 9254 TMT1-1 138.66 86.177 68.6 109.69 99.554 87.171 105.61 128.1 65 109 102 87 109 123 1 1 1 1 1 1 13638 16405 1833 16203 25066 32481 32481 1 SLAAEWGK Unmodified 860.43922 0.43921744 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 7 0 1 51.945 51.945 3 0.0010423 14289 TMT1-6 75.213 13.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16406 1900 16204 25067 32482 32482 1 SLADELALVDVLEDK Unmodified 1628.8509 0.85088273 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 3.4 1.36 1 1 2 1 87.907 87.907 2;3 5.1919E-21 29074 TMT1-3 167.22 148.39 1445.3 1704.5 1811.3 1449.6 1714.8 1642.8 1365 1722 1835 1454 1757 1587 9 10 10 9 10 10 392320 16407 527 16205 25068;25069;25070;25071;25072 32483;32484;32485;32486;32487;32488;32489;32490;32491;32492 32487 10 SLADELALVDVLEDKLK Unmodified 1870.0299 0.02990973 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 1 5.5 0.5 2 2 89.116 89.116 3;4 1.4854E-24 29401 TMT1-4 150.76 134.08 559.8 708.78 533 497.56 564.64 558.46 528 710 555 494 580 539 6 6 6 6 6 6 92427 16408 527 16206 25073;25074;25075;25076 32493;32494;32495;32496;32497;32498 32495 6 SLADIAR Unmodified 744.413 0.41300269 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 0 5 0 1 43.139 43.139 2 0.0077102 11323 TMT1-4 124.59 43.213 372.67 544.07 384.28 362.81 296.51 505.35 352 541 402 358 316 482 1 1 1 1 1 1 68069 16409 892 16207 25077 32499 32499 1 SLAEGYFDAAGR Unmodified 1255.5833 0.5833155 205 O43813 LANCL1 LanC-like protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 54.483 54.483 2 0.00011639 15994 TMT1-3 104.07 75.012 176.41 246.58 259.17 169.35 286.27 300.97 167 247 261 174 291 290 2 2 2 2 2 2 83632 16410 205 16208 25078;25079 32500;32501 32500 2 SLAGSSGPGASSGTSGDHGELVVR Unmodified 2184.0407 0.040702201 941 P29692;P29692-2 EEF1D Elongation factor 1-delta yes no 0 0 0 0 0 5 1 1 1 39.656 39.656 3 1.1243E-50 10225 TMT1-3 171.64 155.52 30.55 75.084 31.588 60.733 41.408 53.184 29 73 36 58 44 51 2 2 2 2 2 2 22749 16411 941 16209 25080;25081 32502;32503 32502 2 SLAKALMIR Oxidation (M) 1017.6005 0.60048589 1551 Q01432-3;Q01432;Q01432-5;Q01432-4;Q01432-2 AMPD3 AMP deaminase 3 yes no 0 0 1 0 1 9 0 1 50.791 50.791 3 0.044448 12085 TMT1-8 41.427 13.25 153.38 230.39 174.8 144.77 175.33 305.2 145 229 181 145 184 291 1 1 1 1 1 1 13203 16412 1551 16210 25082 32504 32504 247 1 SLALQAEK Unmodified 858.48108 0.48108226 2034 Q6P589 TNFAIP8L2 Tumor necrosis factor alpha-induced protein 8-like protein 2 yes yes 0 0 0 0 0 6 0 1 44.828 44.828 2 0.031427 12102 TMT1-5 80.755 30.148 209.88 375.66 295.28 274.27 346.83 377.06 199 371 306 273 356 363 1 1 1 1 1 1 20372 16413 2034 16211 25083 32505 32505 1 SLAPFDREPFTLGK Unmodified 1576.8249 0.82494275 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 1 8 0 1 62.865 62.865 3 0.0013704 18616 TMT1-7 73.887 51.412 115.45 151.86 124.39 171.95 168.41 165.75 109 152 131 167 174 160 1 1 1 1 1 1 29296 16414 1669 16212 25084 32506 32506 1 SLAQAAR Unmodified 715.39769 0.39768698 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.33 1.25 1 1 1 27.859 27.859 2 0.0021944 5384 TMT1-5 143.23 44.089 1230.8 1479.2 1255.8 1059.3 1356.2 1397.2 1161 1488 1292 1061 1389 1347 3 3 3 3 3 3 166320 16415 3010 16213 25085;25086;25087 32507;32508;32509;32510 32509 4 SLAQAEAEK Unmodified 945.47673 0.47672516 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 39.875 39.875 2 0.0013536 10302 TMT1-3 120.68 46.196 123.13 151.81 96.471 93.466 187.47 172.67 116 152 102 94 189 167 1 1 1 1 1 1 20839 16416 1833 16214 25088 32511 32511 1 SLCPFYGEDFYCEIPR Unmodified 2051.8757 0.87573405 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 1 72.486 72.486 3 2.6273E-11 22820 TMT1-4 103.61 99.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16417 1786 16215 25089 32512 32512 1 SLDAFPEDFCR Unmodified 1355.5816 0.58160094 2432 Q96KG9-5;Q96KG9-3;Q96KG9-4;Q96KG9-6;Q96KG9-2;Q96KG9 SCYL1 N-terminal kinase-like protein yes no 0 0 0 0 0 4 0 1 60.751 60.751 2 0.012064 18541 TMT1-3 77.14 61.701 38.103 43.386 51.489 20.153 43.823 37.125 36 44 51 22 44 36 1 1 1 1 1 1 5508.9 16418 2432 16216 25090 32513 32513 1 SLDDEVNAFK Unmodified 1136.535 0.53496832 1752 Q14141-2;Q14141-4;Q14141 SEPT6 Septin-6 yes no 0 0 0 0 0 4.5 0.5 1 1 57.834 57.834 2 1.6233E-20 17370 TMT1-3 195.79 167.58 384.55 545.64 369.62 372.78 568.36 556.22 363 543 389 371 578 537 3 3 3 3 3 3 104700 16419 1752 16217 25091;25092 32514;32515;32516 32514 3 SLDEMEK Unmodified 850.37423 0.37423392 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 2 0 1 45.026 45.026 2 0.0044324 12954 TMT1-1 83.265 17.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16420 857 16218 25093 32517 32517 1 SLDFLIELLHK Unmodified 1326.7547 0.75473792 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 9 0 1 84.663 84.663 3 2.8701E-05 25323 TMT1-8 103.22 76.622 61.101 118.87 89.609 104.59 82.544 106.38 58 117 94 102 87 102 2 2 2 2 2 2 8674.1 16421 1762 16219 25094 32518;32519 32518 2 SLDGAAAVDSADR Unmodified 1246.579 0.5789584 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 0 2 0 1 40.846 40.846 2 1.1289E-07 11322 TMT1-1 121.29 83.565 30.725 35.635 35.719 21.099 43.487 45.663 29 36 36 22 44 44 1 1 1 1 1 1 5098.3 16422 643 16220 25095 32520 32520 1 SLDIQSLDIQCEELSDAR Acetyl (N-term) 2132.9896 0.98957783 681 P13489 RNH1 Ribonuclease inhibitor yes yes 1 0 0 0 0 2 0 2 78.097 78.097 2;3 2.0517E-17 25503 TMT1-1 61.038 61.038 15.866 29.563 13.365 22.708 28.77 15.169 15 29 15 22 29 15 1 1 1 1 1 1 8955 16423 681 16221 25096;25097 32521;32522 32522 2 SLDLDDWPR Unmodified 1115.5247 0.52473799 2467 Q99490-2;Q99490 AGAP2 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 yes no 0 0 0 0 0 4 0 1 62.003 62.003 2 0.0062941 19025 TMT1-3 95.358 45.232 46.799 50.666 26.455 36.982 41.987 68.092 44 51 29 36 44 65 1 1 1 1 1 1 7242.3 16424 2467 16222 25098 32523 32523 1 SLDLDISK Unmodified 889.47566 0.47566253 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 5 0 1 57.093 57.093 2 0.0042473 16731 TMT1-4 126.41 86.41 115.48 160.59 111.47 85.914 134.68 166.72 109 160 116 87 138 160 1 1 1 1 1 1 40063 16425 1102 16223 25099 32524 32524 1 SLDLFNCEITNLEDYR Unmodified 2000.915 0.91495633 2534 Q9BTT0;Q9BTT0-3;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 0 5 0 1 78.883 78.883 3 3.5109E-11 25284 TMT1-4 116.96 101.07 53.874 96.427 61.012 73.204 98.682 104.85 51 95 65 72 101 101 2 2 2 2 2 2 21025 16426 2534 16224 25100 32525;32526 32525 2 SLDLFNCEVTNLNDYR Unmodified 1971.8996 0.89964061 2311;1064 P39687;Q92688-2;Q92688 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B no no 0 0 0 0 0 5.33 0.471 2 1 72.076 72.076 2;3 1.5616E-18 22803 TMT1-5 150.39 140.43 115.75 161.32 66.707 152.41 169.6 157.19 109 160 73 146 174 152 3 3 2 3 3 3 84587 16427 1064;2311 16225 25101;25102;25103 32527;32528;32529 32529 3 SLDLIESLLR Unmodified 1157.6656 0.66558856 10 A5YKK6-2;A5YKK6;A5YKK6-3;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 0 7 0 1 83.403 83.403 2 0.019565 26597 TMT1-6 76.1 44.871 38.109 43.404 50.413 44.279 42.97 29.688 36 44 51 44 44 29 1 1 1 1 1 1 6680.6 16428 10 16226 25104 32530 32530 1 SLDLVTMK Unmodified 905.4892 0.4892041 1752;2757 Q14141-2;Q14141-4;Q14141;Q14141-3;Q92599-3;Q92599-2;Q92599-4;Q92599;Q9NVA2 SEPT6;SEPT8;SEPT11 Septin-6;Septin-8;Septin-11 no no 0 0 0 0 0 7 0 1 59.095 59.095 3 0.0063746 17097 TMT1-6 79.713 37.733 169.59 273.86 118.51 133.4 144.81 234.65 160 270 131 131 152 224 1 1 1 1 1 1 11119 16429 1752;2757 16227 25105 32531 32531 1 SLDNFFAK Unmodified 940.46543 0.46543219 2901 Q9UKY7-2;Q9UKY7 CDV3 Protein CDV3 homolog yes no 0 0 0 0 0 8 0 1 63.08 63.08 2 0.0061505 18724 TMT1-7 109.11 42.117 153.28 271.13 157.14 146.26 152.04 250.44 145 267 167 145 160 239 1 1 1 1 1 1 47340 16430 2901 16228 25106 32532 32532 1 SLDQDPVVR Unmodified 1027.5298 0.52982336 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 3 0 1 40.154 40.154 2 0.0075477 11370 TMT1-2 63.184 32.591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16431 2303 16229 25107 32533 32533 1 SLDSFLLSPEAAVGLLK Unmodified 1758.9768 0.97675195 3031 Q9Y5L0-3;Q9Y5L0;Q9Y5L0-1 TNPO3 Transportin-3 yes no 0 0 0 0 0 8 0 1 90.507 90.507 3 0.00072008 29221 TMT1-7 51.193 34.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16432 3031 16230 25108 32534 32534 1 SLDSGIR Unmodified 746.39227 0.39226725 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 6.5 1.5 1 1 35.021 35.021 2 2.7831E-07 8080 TMT1-4 134.12 51.739 46.747 42.966 41.775 67.782 41.083 53.194 44 44 44 65 44 51 1 1 1 1 1 1 2899.1 16433 377 16231 25109;25110 32535;32536 32535 2 SLDWQMVFLQK Unmodified 1393.7064 0.70640752 881 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 0 0 9 0 1 78.59 78.59 3 0.0094078 23074 TMT1-8 57.175 20.758 46.462 73.473 63.761 43.247 55.551 91.157 44 73 65 44 58 87 1 1 1 1 1 1 7109.2 16434 881 16232 25111 32537 32537 1 SLEAASEK Unmodified 833.41306 0.41306227 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 0 3.2 1.72 1 1 1 1 1 37.218 37.218 2 1.9E-05 9154 TMT1-3 164.77 39.19 8936.6 11766 9754.3 8424.5 10137 13309 8438 11778 10056 8414 10498 12756 8 8 8 8 8 8 1477700 16435 1486;1487 16233 25112;25113;25114;25115;25116 32538;32539;32540;32541;32542;32543;32544;32545 32544 8 SLEAQAEK Unmodified 874.43961 0.43961137 520;518;594 P06753-5;P06753-4;P06753-7;P09493-5;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 4 0 1 36.572 36.572 2 0.0043307 9001 TMT1-3 125.82 4.7687 99.853 91.748 91.79 87.763 98.767 113.38 94 94 94 87 102 109 1 1 1 1 1 1 17030 16436 520;594;518 16234 25117 32546 32546 1 SLEAQVAHADQQLR Unmodified 1564.7958 0.79576789 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 4 0 1 43.154 43.154 3 5.3157E-05 11616 TMT1-3 89.471 62.685 99.474 153.29 103.32 110.46 134.1 150.74 94 152 109 109 138 145 1 1 1 1 1 1 19791 16437 1805 16235 25118 32547 32547 1 SLEDALSSDTSGHFR Unmodified 1620.738 0.73797824 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 5 0.816 1 1 1 50.567 50.567 3 3.4936E-35 14526 TMT1-3 201.08 172.72 321.41 666.11 419.11 418.22 494.41 577.52 305 653 443 414 510 555 4 4 4 4 4 4 142120 16438 555 16236 25119;25120;25121 32548;32549;32550;32551 32548 4 SLEDLIFESLPENASHK Unmodified 1927.9527 0.95272204 344 O95260-2;O95260 ATE1 Arginyl-tRNA--protein transferase 1 yes no 0 0 0 0 0 5 0 1 76.274 76.274 3 2.187E-14 24300 TMT1-4 127.3 107.21 23.22 44.801 26.86 38.455 20.46 22.868 22 44 29 37 22 22 1 1 1 1 1 1 7072.2 16439 344 16237 25122 32552 32552 1 SLEDLQDEYDFK Unmodified 1500.662 0.66201933 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 2 0 1 66.149 66.149 3 1.4529E-05 21136 TMT1-1 86.772 66.109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16440 1091 16238 25123 32553 32553 1 SLEDQVEMLR Unmodified 1218.5914 0.59143734 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 3 0.816 1 1 1 56.702 56.702 2 4.3174E-14 17945 TMT1-2 183.72 157.78 268.75 401.44 297.34 332.26 395.18 444.97 254 399 312 327 407 428 4 4 4 4 4 4 61542 16441 700 16239 25124;25125;25126 32554;32555;32556;32557 32556 4 SLEEAQEWLK Unmodified 1231.6085 0.60846762 2746 Q9NTX5-6;Q9NTX5-2;Q9NTX5;Q9NTX5-3 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 0 5 0 1 64.239 64.239 3 5.9383E-05 19581 TMT1-4 90.108 68.333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16442 2746 16240 25127 32558 32558 1 SLEEIYLFSLPIK Unmodified 1550.8596 0.85959692 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 8 0 2 86.562 86.562 2;3 1.8895E-08 27839 TMT1-7 122.42 98.818 231.54 268.81 171.11 191.15 336.26 278.22 218 270 182 190 339 270 3 3 3 3 3 3 93219 16443 727 16241 25128;25129 32559;32560;32561 32560 3 SLEELPVDIILASVG Unmodified 1553.8552 0.85523983 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 108.63 108.63 2 0.00036496 33775 TMT1-4 84.17 50.209 4.24 7.1168 2.7069 2.0376 2.9731 2.077 4 7 3 2 3 2 2 2 2 1 2 1 7480.2 16444 3047 16242 25130;25131 32562;32563 32562 2 SLEFSER Unmodified 866.4134 0.41339662 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 3.5 0.5 1 1 41.511 41.511 2 0.0091603 11983 TMT1-2 113.5 46.464 199.62 290.29 287.54 175.47 278.09 348.11 189 290 290 181 285 334 2 2 2 2 2 2 31848 16445 974 16243 25132;25133 32564;32565 32564 2 SLEGDLEDLKDQIAQLEASLAAAK Unmodified 2527.3017 0.30172749 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 8 0.816 1 1 1 99.595 99.595 4;5 3.9637E-10 30826 TMT1-8 75.112 52.459 89.906 127.22 110.5 82.646 137.21 158.12 85 127 113 84 140 152 5 5 5 5 5 5 7800 16446 816 16244 25134;25135;25136 32566;32567;32568;32569;32570 32570 5 SLEIEEK Unmodified 846.43346 0.43346336 1472 P63151;P63151-2;Q00005-6;Q00005;Q00005-2;Q00005-3;Q66LE6;Q00005-4;Q00005-5;Q00005-7;Q9Y2T4-3;Q9Y2T4-4;Q9Y2T4-2;Q9Y2T4 PPP2R2A;PPP2R2B;PPP2R2D;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 0 0 0 0 0 4 0 1 45.787 45.787 2 0.0036521 12612 TMT1-3 86.011 14.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16447 1472 16245 25137 32571 32571 1 SLENYHFVDEHGK Unmodified 1573.7161 0.71612058 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 4.5 0.5 1 1 42.399 42.399 4 5.6119E-06 11274 TMT1-3 106.17 84.617 299.88 371.29 320.56 236.77 284.7 347.92 283 373 328 239 294 334 2 2 2 2 2 2 24862 16448 1789 16246 25138;25139 32572;32573 32572 2 SLEPLPSSGPDFGGLGEEAEFVEVEPEAK Unmodified 3015.4237 0.42369312 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 0 4 0 1 79.371 79.371 4 8.0653E-06 25784 TMT1-3 56.903 42.319 77.908 32.327 43.302 44.3 64.407 45.066 73 36 44 44 65 44 1 1 1 1 1 1 5982.1 16449 3023 16247 25140 32574 32574 1 SLEPPLFPPDLFGELLASSELEATAER Unmodified 2927.4804 0.48042014 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 6.33 0.471 2 1 103.51 103.51 3;4 2.6221E-05 33387 TMT1-6 55.26 48.307 22.398 21.783 17.602 10.201 4.6279 9.4619 21 22 18 10 5 9 4 4 5 3 3 3 4635.6 16450 1530 16248 25141;25142;25143 32575;32576;32577;32578;32579 32579 5 SLEQQLADADR Unmodified 1244.5997 0.59969384 2584 Q9BZF9-2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 0 0 0 2 0 1 47.746 47.746 2 0.00045484 14028 TMT1-1 78.043 39.292 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16451 2584 16249 25144 32580 32580 1 SLESALK Unmodified 746.41742 0.41741937 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 6 0 1 46.747 46.747 2 0.0055444 12822 TMT1-5 134.06 41.59 1444.1 2971.7 2194.8 1651.1 2133.8 2667 1372 2919 2268 1667 2200 2559 2 2 2 2 2 2 327540 16452 128 16250 25145 32581;32582 32581 2 SLESLDTSLFAK Unmodified 1309.6765 0.67654718 1651 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 0 7 0 1 70.053 70.053 3 0.0001757 21414 TMT1-6 93.345 60.116 46.186 142.86 51.349 58.431 101.18 82.393 44 138 58 58 102 80 1 1 1 1 1 1 16234 16453 1651 16251 25146 32583 32583 1 SLESLHSFVAAATK Unmodified 1459.7671 0.76709352 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8.5 0.5 1 1 60.687 60.687 3 4.0559E-24 15985 TMT1-8 176.25 144 207.29 316.11 239.64 170.64 279.7 246.79 196 314 247 174 283 239 2 2 2 2 2 2 32193 16454 1833 16252 25147;25148 32584;32585 32585 2 SLETEHK Unmodified 842.4134 0.41339662 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 3 0.816 1 1 1 28.923 28.923 3 0.0014617 5979 TMT1-3 126.67 61.63 275.87 454.89 317.56 267.05 369.5 396.67 261 450 331 268 378 382 2 2 2 2 2 2 28186 16455 478 16253 25149;25150;25151 32586;32587;32588 32588 3 SLETENAGLR Unmodified 1088.5462 0.54620171 429 P02545-2;P02545-6;P02545-3;P02545 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 3 0 1 38.341 38.341 2 0.00014648 10620 TMT1-2 134.51 66.295 68.921 79.281 71.299 57.97 62.46 83.498 65 80 73 58 65 80 1 1 1 1 1 1 19397 16456 429 16254 25152 32589 32589 1 SLETENSALQLQVTER Unmodified 1816.9167 0.91667089 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 3.5 0.5 1 1 54.833 54.833 2;3 3.3132E-29 16144 TMT1-3 189.07 151.19 76.214 117.02 75.886 73.391 99.684 105.89 72 116 80 73 102 102 2 2 2 2 2 2 30850 16457 816 16255 25153;25154 32590;32591 32591 2 SLETENSALQLQVTEREEVR Unmodified 2330.1714 0.17138202 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 1 2.67 0.471 1 2 51.534 51.534 3;4 3.0364E-13 15616 TMT1-1 109.37 90.334 153.88 173.5 139.13 171.9 182.25 219.73 145 175 146 168 189 211 3 3 3 3 3 3 55980 16458 816 16256 25155;25156;25157 32592;32593;32594 32592 3 SLETSAFVK Unmodified 980.51786 0.51786169 2677 Q9HB40 SCPEP1 Retinoid-inducible serine carboxypeptidase yes yes 0 0 0 0 0 7 0 1 52.261 52.261 2 0.00035014 14415 TMT1-6 104.2 71.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16459 2677 16257 25158 32595 32595 1 SLETSLVPLSDPK Unmodified 1384.745 0.7449611 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 0 6 0 1 62.952 62.952 3 0.00035386 19264 TMT1-5 82.543 59.626 84.904 85.423 84.97 81.053 70.324 67.283 80 87 87 80 73 65 1 1 1 1 1 1 11494 16460 1242 16258 25159 32596 32596 1 SLEVLVADLVNAQK Unmodified 1497.8403 0.84025847 1529 P98170 XIAP E3 ubiquitin-protein ligase XIAP yes yes 0 0 0 0 0 7 0 1 87.387 87.387 3 0.0010538 28151 TMT1-6 71.241 46.449 7.3893 6.7028 14.77 22.92 13.039 46.532 7 7 15 22 15 44 1 1 1 1 1 1 1739 16461 1529 16259 25160 32597 32597 1 SLEVSER Unmodified 818.4134 0.41339662 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 2 0 1 34.051 34.051 2 0.010292 8621 TMT1-1 108.7 53.093 53.987 80.554 55.38 50.971 78.23 90.51 51 80 58 51 80 87 1 1 1 1 1 1 6187 16462 695 16260 25161 32598 32598 1 SLFEQYGK Unmodified 970.476 0.47599688 2507 Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04;Q9BWF3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 0 7 0 1 54.222 54.222 2 0.0015271 15192 TMT1-6 87.308 30.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16463 2507 16261 25162 32599 32599 1 SLFLGQK Unmodified 791.45414 0.45413923 268 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 0 9 0 1 53.702 53.702 2 0.008657 13244 TMT1-8 143.02 48.612 910.75 1301.1 918.96 784.33 1179.3 1068.6 860 1295 958 788 1197 1034 1 1 1 1 1 1 112360 16464 268 16262 25163 32600 32600 1 SLFSNVVTK Unmodified 993.5495 0.54949617 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 2 57.962 57.962 2;3 0.00015041 14875 TMT1-8 147.95 86.268 346.53 442.06 354.61 367.66 423.38 429.24 327 443 369 363 435 414 3 3 3 3 3 3 35891 16465 981 16263 25164;25165 32601;32602;32603 32601 3 SLFSSIGEVESAK Unmodified 1352.6824 0.68236084 1869 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 65.123 65.123 3 5.3496E-09 20067 TMT1-5 127.56 86.019 184.15 246.71 220.38 164.66 251.6 250.79 174 247 225 167 256 242 2 2 2 2 2 2 31075 16466 1869 16264 25166;25167 32604;32605 32604 2 SLFVQELLLSTLVR Unmodified 1616.9501 0.95014327 2812 Q9P0J7 KCMF1 E3 ubiquitin-protein ligase KCMF1 yes yes 0 0 0 0 0 9 0 1 93.375 93.375 3 6.1619E-05 28625 TMT1-8 81.128 45.925 47.938 35.667 28.024 21.829 29.051 38.613 45 37 29 22 30 37 2 2 2 2 2 2 6768.3 16467 2812 16265 25168 32606;32607 32606 2 SLGAEPLEVDLK Unmodified 1269.6816 0.68163256 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 63.029 63.029 3 9.33E-08 19406 TMT1-3 122.33 84.726 238.31 351.5 225.5 242.59 334.41 324.12 225 349 239 240 341 313 3 3 3 3 3 3 41876 16468 1702 16266 25169;25170 32608;32609;32610 32608 3 SLGDDISSETSGDFR Unmodified 1584.6904 0.69035934 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 0 2 0 1 53.864 53.864 2 4.0809E-14 16448 TMT1-1 130.44 93.911 15.89 14.517 22.2 14.667 21.554 22.837 15 15 22 15 22 22 1 1 1 1 1 1 4773.4 16469 670 16267 25171 32611 32611 1 SLGDDISSETSGDFRK Unmodified 1712.7853 0.78532236 670 P12429 ANXA3 Annexin A3 yes yes 0 0 0 0 1 4 0 1 50.224 50.224 3 9.6454E-07 14379 TMT1-3 100.11 75.177 107.37 190.72 187.49 112.83 148.1 166.33 102 189 189 116 152 160 1 1 1 1 1 1 15561 16470 670 16268 25172 32612 32612 1 SLGEHLPK Unmodified 879.48142 0.48141661 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 6 0 1 38.162 38.162 3 0.019197 9431 TMT1-5 63.565 28.27 308.64 416.52 253.12 279.97 351.29 391.86 291 415 270 276 361 377 1 1 1 1 1 1 56571 16471 1669 16269 25173 32613 32613 1 SLGEIPIVESEIK Unmodified 1412.7763 0.77626123 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 5 0 1 68.427 68.427 3 0.0068139 21251 TMT1-4 60.401 36.724 77.213 92.991 108.79 71.403 101.13 66.404 73 94 109 73 102 65 1 1 1 1 1 1 5886.4 16472 1286 16270 25174 32614 32614 1 SLGEIPIVESEIKK Unmodified 1540.8712 0.87122424 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 1 6 0 2 62.197 62.197 3;4 1.4681E-07 19012 TMT1-5 112.96 91.189 376.38 570.23 459.17 346.14 422.92 501.74 356 567 472 349 436 482 3 3 3 3 3 3 42069 16473 1286 16271 25175;25176 32615;32616;32617 32616 3 SLGEISALTSK Unmodified 1104.6027 0.60265396 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 60.277 60.277 2;3 2.6352E-55 17561 TMT1-6 242.59 200.24 1469.8 2770.6 2733.4 1877.3 2810.6 2665.8 1398 2740 2764 1915 2857 2576 4 4 4 4 4 4 557640 16474 776 16272 25177;25178;25179;25180;25181 32618;32619;32620;32621;32622;32623 32621 6 SLGGYVLSLVHDVR Unmodified 1513.8253 0.8252771 1114 P43403 ZAP70 Tyrosine-protein kinase ZAP-70 yes yes 0 0 0 0 0 8 0 1 70.869 70.869 3 2.2992E-05 21833 TMT1-7 91.993 61.121 30.806 28.307 28.21 29.495 27.688 37.586 29 29 29 29 29 36 1 1 1 1 1 1 5814.8 16475 1114 16273 25182 32624 32624 1 SLGHACIR Unmodified 912.45997 0.45996966 2749 Q9NUJ1;Q9NUJ1-3 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 0 6 0 1 27.379 27.379 3 0.010604 5263 TMT1-5 73.26 32.687 38.226 58.839 17.673 54.052 33.888 37.409 36 58 22 51 36 36 1 1 1 1 1 1 1585.7 16476 2749 16274 25183 32625 32625 1 SLGLSLSGGDQEDAGR Unmodified 1560.738 0.73797824 2884 Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 0 0 0 4 0 1 52.648 52.648 2 1.3146E-42 15321 TMT1-3 172.58 152.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16477 2884 16275 25184 32626 32626 1 SLGPSLATDKS Unmodified 1074.5557 0.55570376 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 1 6 0 1 47.529 47.529 2 3.1342E-08 13171 TMT1-5 120.06 56.497 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16478 2638 16276 25185 32627 32627 1 SLGPVELLLR Unmodified 1095.6652 0.66519463 1887 Q16512-2;Q16512;Q16512-3 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 8 0 1 72.328 72.328 2 0.011612 22358 TMT1-7 81.95 23.135 131.72 136.12 109.26 166.49 100.09 182.63 124 138 116 160 109 174 2 2 2 2 2 2 12015 16479 1887 16277 25186 32628;32629 32628 2 SLGSADELFK Unmodified 1065.5342 0.53424004 1825 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 0 5 0 1 59.588 59.588 2 0.0010747 17752 TMT1-4 77.533 25.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16480 1825 16278 25187 32630 32630 1 SLGTADVHFER Unmodified 1230.5993 0.59929991 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 0 5.5 1.5 1 1 41.515 41.515 3 2.083E-07 10933 TMT1-3 142.19 110.26 399.33 569.85 389.69 325.17 479.2 505.47 377 567 407 327 489 487 3 3 3 3 3 3 82756 16481 2113 16279 25188;25189 32631;32632;32633 32632 3 SLGVHFSK Unmodified 873.47085 0.47085192 1815;1823 Q15027;Q15057 ACAP1;ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1;Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 no no 0 0 0 0 0 8 0 1 43.153 43.153 3 0.0078734 10887 TMT1-7 48.794 35.806 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16482 1815;1823 16280 25190 32634 32634 1 SLHDAIMIVR Unmodified 1153.6278 0.62776327 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 7 0 1 50.088 50.088 3 0.00013577 13536 TMT1-6 109.42 72.437 92.336 92.244 92.482 72.411 99.216 120.82 87 94 94 73 102 116 1 1 1 1 1 1 26946 16483 2496 16281 25191 32635 32635 1 SLHDALCVIR Unmodified 1182.6179 0.61792687 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 7.67 0.943 2 1 48.454 48.454 3 0.00016802 13119 TMT1-6 104.42 0 285.48 316.86 261.27 209.71 284.11 340.47 269 320 269 211 292 327 4 4 4 4 4 4 83410 16484 1161 16282 25192;25193;25194 32636;32637;32638;32639 32637 4 SLHDALCVLAQTVK Unmodified 1553.8236 0.82356254 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 9 0 2 71.712 71.712 3;4 4.9157E-10 20317 TMT1-8 110.44 89.042 245.92 311.31 243.85 248.31 379.19 352.69 232 312 254 247 385 341 3 3 3 3 3 3 47019 16485 1504 16283 25195;25196 32640;32641;32642 32640 3 SLHDALCVVK Unmodified 1140.5961 0.59612879 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 7 0 1 50.084 50.084 3 0.00055203 13513 TMT1-6 98.048 81.85 498.33 676.48 612.73 458.37 651.87 629.53 471 677 625 464 664 608 2 2 2 2 2 2 49041 16486 770 16284 25197 32643;32644 32643 2 SLHQAIEGDTSGDFLK Unmodified 1716.8319 0.83187862 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 5.67 0.943 2 1 52.662 52.662 3 6.2652E-24 15133 TMT1-4 143.28 92.478 145.75 268.35 162.8 193.82 220.54 263.4 138 264 174 190 228 253 1 1 1 1 1 1 17958 16487 555 16285 25198;25199;25200 32645;32646;32647 32645 3 SLHSATTIGNK Unmodified 1127.5935 0.59348625 1248 P51610-2;P51610;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 8 1 1 1 34.68 34.68 3 0.00090751 6338 TMT1-8 78.342 57.395 100.56 99.3 146.38 115.01 162.13 211.77 95 102 146 116 167 203 2 2 2 2 2 2 8972.8 16488 1248 16286 25201;25202 32648;32649 32649 2 SLHTLFGDK Unmodified 1016.5291 0.52909508 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 6 3.56 1 1 1 50.73 50.73 2;3 9.6687E-09 13819 TMT1-7 170.95 105.91 1155.8 1730.1 1382.2 1051 1511.8 1630.5 1093 1721 1422 1063 1545 1570 4 4 4 4 4 4 163250 + 16489 28 16287 25203;25204;25205 32650;32651;32652;32653 32652 4 SLIANLAAANCYK Unmodified 1407.718 0.71803484 1318 P55263-3;P55263-4;P55263-2;P55263 ADK Adenosine kinase yes no 0 0 0 0 0 9 0 1 63.406 63.406 3 2.861E-05 17069 TMT1-8 86.592 64.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16490 1318 16288 25206 32654 32654 1 SLIDQFFGVEFETTMK Unmodified 1890.9074 0.90735175 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 0 7 0 1 91.121 91.121 3 0.00037887 29542 TMT1-6 73.168 54.093 84.984 116.95 44.75 67.059 70.125 91.807 80 116 51 65 73 88 2 2 2 2 2 2 4849 16491 1298 16289 25207 32655;32656 32656 2 SLIEEGGDWDRR Unmodified 1431.6743 0.67425577 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 1 3 0 1 46.443 46.443 3 4.5385E-07 13860 TMT1-2 95.138 82.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16492 1810 16290 25208 32657 32657 1 SLIGMTK Oxidation (M) 764.41023 0.4102255 1726 Q13596-2;Q13596;Q13596-3 SNX1 Sorting nexin-1 yes no 0 0 1 0 0 9 0 1 39.669 39.669 3 0.043204 8017 TMT1-8 52.716 13.924 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16493 1726 16291 25209 32658 32658 265 1 SLIIDEGEDDLGR Unmodified 1430.6889 0.68890278 98 O14618 CCS Copper chaperone for superoxide dismutase yes yes 0 0 0 0 0 2.5 0.5 1 1 58.74 58.74 2 5.143E-28 18371 TMT1-1 197.94 148.49 100.39 167.89 117.68 132.67 185.92 165.25 95 166 124 131 189 160 3 3 3 3 3 3 38803 16494 98 16292 25210;25211 32659;32660;32661 32659 3 SLIINTFYSNK Unmodified 1298.6871 0.68705229 1954 Q58FF6 HSP90AB4P Putative heat shock protein HSP 90-beta 4 yes yes 0 0 0 0 0 9 0 1 65.176 65.176 3 0.00097205 17746 TMT1-8 77.597 54.585 92.36 116.06 68.261 73.993 91.83 90.122 87 116 73 73 94 87 1 1 1 1 1 1 13815 16495 1954 16293 25212 32662 32662 1 SLIINTNPVEVYK Unmodified 1488.8188 0.81879474 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7.5 0.5 1 1 64.687 64.687 3 6.6345E-11 19317 TMT1-6 132.86 98.982 316.25 370.95 274.92 264 317.95 378.95 298 373 287 262 328 364 2 2 2 2 2 2 55041 16496 1723 16294 25213;25214 32663;32664 32663 2 SLIIVHPSWFIR Unmodified 1466.8398 0.83980496 1662 Q12982;Q12982-2;Q86WG3;Q86WG3-3 BNIP2;ATCAY BCL2/adenovirus E1B 19 kDa protein-interacting protein 2;Caytaxin yes no 0 0 0 0 0 9 0 1 66.71 66.71 3 0.00162 18392 TMT1-8 68.676 49.93 46.645 73.981 32.653 36.489 48.532 91.357 44 73 36 36 51 87 1 1 1 1 1 1 6695.9 16497 1662 16295 25215 32665 32665 1 SLIPSYIR Unmodified 947.54402 0.54401687 2733;810 P20340;P20340-2;P20340-4;Q9NRW1;Q9NRW1-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 0 8 0 1 55.873 55.873 2 1.1298E-07 15933 TMT1-7 169.97 88.19 625.14 827.4 811.28 592.84 718.62 759.81 591 830 823 599 738 732 1 1 1 1 1 1 117000 16498 810;2733 16296 25216 32666 32666 1 SLITFVNK Unmodified 920.53312 0.53311783 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 9 0 2 60.895 60.895 2;3 1.5022E-10 16046 TMT1-8 148.38 87.594 191.32 237.71 284.24 321.26 324.19 242.33 181 240 290 315 332 236 1 1 1 1 1 1 53993 16499 2682 16297 25217;25218 32667;32668 32668 2 SLIVEGK Unmodified 744.43815 0.43815481 1028 P35659 DEK Protein DEK yes yes 0 0 0 0 0 6 0 2 46.553 46.553 2 0.00093948 12771 TMT1-5 112.17 20.545 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16500 1028 16298 25219;25220 32669;32670 32669 2 SLKPDDLGSLR Unmodified 1199.651 0.65100113 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 1 6 0 1 47.427 47.427 3 0.0014304 13104 TMT1-5 88.803 52.132 448.71 375.31 370.86 348.29 414.14 541.44 422 387 380 346 429 519 1 1 1 1 1 1 34188 16501 1786 16299 25221 32671 32671 1 SLLAGLLK Unmodified 813.53239 0.53238955 978 P31751-2;P31751 AKT2 RAC-beta serine/threonine-protein kinase yes no 0 0 0 0 0 9 0 1 69.951 69.951 2 0.0072398 19642 TMT1-8 114.6 43.69 115.68 121.19 112.49 115.98 218.41 124.89 109 123 116 116 218 123 1 1 1 1 1 1 14018 16502 978 16300 25222 32672 32672 1 SLLALEKEEEEER Unmodified 1573.7835 0.78353145 3011 Q9Y4D1;Q9Y4D1-2;Q9Y4D1-3 DAAM1 Disheveled-associated activator of morphogenesis 1 yes no 0 0 0 0 1 4 0 1 50.912 50.912 3 0.00052626 14606 TMT1-3 84.753 61.334 130.37 119.26 168.87 90.128 135.54 135.78 123 123 167 94 138 131 1 1 1 1 1 1 16435 16503 3011 16301 25223 32673 32673 1 SLLAWQSLR Unmodified 1072.6029 0.60292873 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 62.494 62.494 2 0.013155 16711 TMT1-8 88.392 37.689 92.201 131.8 81.52 95.21 142.13 150.51 87 131 87 94 145 145 1 1 1 1 1 1 14305 16504 1833 16302 25224 32674 32674 1 SLLAYDLGLTTK Unmodified 1293.718 0.71801807 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 8 0 2 71.205 71.205 2;3 4.4676E-14 21988 TMT1-7 171.49 109.19 557.96 1139 838.33 593.66 763.41 855.53 530 1119 865 602 784 823 3 3 3 3 3 3 184980 16505 1079 16303 25225;25226 32675;32676;32677 32676 3 SLLCTPIK Unmodified 930.52084 0.52083858 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 9 0 1 54.921 54.921 2 0.008775 13704 TMT1-8 93.162 37.632 208.15 231.09 166.53 153.2 160.33 212.89 196 233 174 152 167 204 2 2 2 2 2 2 13192 16506 322 16304 25227 32678;32679 32678 2 SLLDACESR Unmodified 1049.4812 0.48115861 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 42.753 42.753 2 0.00096483 11413 TMT1-3 126.24 48.925 139.03 173.91 110.61 84.65 204.63 172.18 131 174 116 87 205 167 1 1 1 1 1 1 20121 16507 1546 16305 25228 32680 32680 1 SLLDASEEAIK Unmodified 1174.6081 0.60813326 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 0 2 60.113 60.113 2;3 1.2653E-06 18291 TMT1-3 127.42 44.674 639.65 661.61 677.74 484.72 556.08 733.53 603 673 686 490 577 703 2 2 2 2 2 2 178780 16508 776 16306 25229;25230 32681;32682 32682 2 SLLDASEEAIKK Unmodified 1302.7031 0.70309628 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 4.25 1.92 1 2 1 56.361 56.361 3;4 1.8593E-09 16380 TMT1-4 151.1 101.75 4904.9 5742 5191.5 3756.8 4749.5 5706.2 4627 5789 5294 3802 4893 5480 5 5 5 5 5 5 506610 16509 776 16307 25231;25232;25233;25234 32683;32684;32685;32686;32687 32684 5 SLLDFLPR Unmodified 959.54402 0.54401687 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 9 0 1 75.916 75.916 2 0.0072173 21987 TMT1-8 106.36 39.363 69.126 56.108 56.419 58.853 62.675 76.03 65 58 58 58 65 73 1 1 1 1 1 1 7986.5 16510 1293 16308 25235 32688 32688 1 SLLEAQK Unmodified 787.44397 0.44396847 2754 Q9NUY8-2;Q9NUY8 TBC1D23 TBC1 domain family member 23 yes no 0 0 0 0 0 6 0 1 45.162 45.162 2 0.033069 12099 TMT1-5 89.296 21.538 154.24 103.26 138.58 84.573 120.09 136.22 145 109 138 87 123 131 1 1 1 1 1 1 50513 16511 2754 16309 25236 32689 32689 1 SLLEGLLQR Unmodified 1027.6026 0.60259438 881 P25098;P35626 ADRBK1;ADRBK2 Beta-adrenergic receptor kinase 1;Beta-adrenergic receptor kinase 2 yes no 0 0 0 0 0 8 0 1 68.234 68.234 2 0.0071547 20747 TMT1-7 93.467 28.002 99.963 108.24 59.298 90.548 53.632 83.75 94 109 65 87 58 80 1 1 1 1 1 1 17956 16512 881 16310 25237 32690 32690 1 SLLEILNSAADILINSSEADEDGIRDEK Unmodified 3029.5041 0.50406871 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 1 7 0 1 101.98 101.98 4 1.4098E-16 33093 TMT1-6 98 82.721 0 15.96 0 4.1638 11.069 7.1461 0 15 0 4 11 7 0 1 0 1 1 1 1039.1 16513 2935 16311 25238 32691 32691 1 SLLEMMLESALTDIK Unmodified 1692.8678 0.86779512 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8 0 1 104.12 104.12 3 8.6667E-05 33483 TMT1-7 82.102 61.721 5.3214 0 7.3316 4.8401 9.9912 7.1769 5 0 7 5 10 7 1 0 1 1 1 1 750.8 16514 2061 16312 25239 32692 32692 1 SLLIPYLDNLVK Unmodified 1386.8123 0.8122528 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 9 0 1 83.537 83.537 2 0.015706 24983 TMT1-8 65.5 25.791 11.587 22.336 17.405 15.093 14.095 26.248 11 22 18 15 15 25 1 1 1 1 1 1 4421.9 16515 65 16313 25240 32693 32693 1 SLLLAGAAEYDNFFQHLR Unmodified 2064.0429 0.042874453 2093 Q7Z460-2;Q7Z460-4;Q7Z460-5;Q7Z460-3;Q7Z460 CLASP1 CLIP-associating protein 1 yes no 0 0 0 0 0 8 0 1 79.322 79.322 3 0.017642 25143 TMT1-7 41.186 29.271 30.729 44.282 27.611 21.439 51.093 36.918 29 44 29 22 51 36 1 1 1 1 1 1 2694.6 16516 2093 16314 25241 32694 32694 1 SLLLLAYLIR Unmodified 1173.7485 0.74853033 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 9 0 1 90.31 90.31 2 0.0054357 27502 TMT1-8 90.709 49.827 30.68 35.511 43.318 45.003 26.975 37.606 29 36 44 44 29 36 1 1 1 1 1 1 7632.4 16517 1789 16315 25242 32695 32695 1 SLLLSVNAR Unmodified 971.57638 0.57637963 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 52.718 52.718 2 0.0023586 12928 TMT1-8 108.81 40.593 269.2 361.69 255.13 264.51 295.31 336.96 254 361 268 261 305 324 2 2 2 2 2 2 67844 16518 1792 16316 25243 32696;32697 32697 2 SLLLTTIPQIGSTEWSETLHNLK Unmodified 2580.3799 0.37991824 1672 Q13126-4;Q13126;Q13126-3;Q13126-2 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 0 9 0 1 81.528 81.528 3 0.011725 24223 TMT1-8 38.583 14.856 15.855 21.975 21.764 14.392 37.529 14.919 15 22 22 15 37 15 1 1 1 1 1 1 3238.7 16519 1672 16317 25244 32698 32698 1 SLLPGCQSVISR Unmodified 1315.6918 0.69182009 361 O95571 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial yes yes 0 0 0 0 0 8 0 1 52.244 52.244 2 1.3512E-08 14495 TMT1-7 145.95 71.773 69.012 79.535 55.72 43.007 93.768 75.142 65 80 58 44 94 73 1 1 1 1 1 1 12974 16520 361 16319 25245 32699 32699 1 SLLPVPYTEAASLSTGSTVTIK Acetyl (N-term) 2276.2151 0.21514432 1593 Q05315 CLC Galectin-10 yes yes 1 0 0 0 0 6 0 1 86.816 86.816 3 0.0054549 28607 TMT1-5 50.858 34.364 154.74 104.65 53.124 57.753 131.59 50.611 145 109 58 58 130 51 2 2 2 2 2 2 16677 16521 1593 16320 25246 32700;32701 32700 2 SLLQALNEVK Unmodified 1113.6394 0.63937381 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 8 0 1 67.844 67.844 2 0.00012134 20626 TMT1-7 137.17 82.642 108.2 130.44 98.448 79.565 106.73 105.69 102 131 102 80 109 102 1 1 1 1 1 1 13928 16522 1763 16321 25247 32702 32702 1 SLLQGTILQYVK Unmodified 1361.7919 0.79185171 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 9 0 1 75.25 75.25 2 5.1184E-07 21747 TMT1-8 122.51 73.093 38.281 35.247 28.439 14.161 28.65 30.096 36 36 29 15 29 29 1 1 1 1 1 1 2524.9 16523 2079;2399 16322 25248 32703 32703 1 SLLQSALDFLAGPGSLGGASGR Acetyl (Protein N-term) 2115.096 0.096032235 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 1 0 0 0 9 0 1 113.67 113.67 3 6.5328E-07 35097 TMT1-8 51.645 33.778 0 2.0954 1.9476 6.0364 1.7805 6.3452 0 2 2 6 2 6 0 1 1 2 1 1 2351 16524 119 16323 25249 32704;32705 32705 2 SLLSAEEAAK Unmodified 1017.5342 0.53424004 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 49.402 49.402 2 1.734E-09 13756 TMT1-4 173.75 107.06 208.96 530.68 318.32 349.9 378.35 424.13 199 517 339 344 391 408 1 1 1 1 1 1 40213 16525 2071 16324 25250 32706 32706 1 SLLSILQR Unmodified 928.57057 0.57056597 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 9 0 1 65.884 65.884 2 0.019735 18006 TMT1-8 78.77 43.414 54.105 73.327 41.663 28.574 33.997 68.32 51 73 44 29 36 65 1 1 1 1 1 1 4514.2 16526 2100 16325 25251 32707 32707 1 SLLSIPNTDYIQLLSEIAK Unmodified 2117.162 0.16198654 290 O75569-3;O75569-2;O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 0 0 0 0 0 8 0 1 94.558 94.558 3 6.3094E-06 30777 TMT1-7 65.808 63.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16527 290 16326 25252 32708 32708 1 SLLSLLPLFLK Unmodified 1242.7951 0.79514617 2062 Q6ZS81-2;Q6ZS81-3;Q6ZS81-5;Q6ZS81-4;Q6ZS81 WDFY4 WD repeat- and FYVE domain-containing protein 4 yes no 0 0 0 0 0 9 0 1 99.959 99.959 3 0.00032977 31017 TMT1-8 85.355 48.959 7.2582 14.972 29.797 14.504 6.1126 15.816 7 15 29 15 7 15 1 1 1 1 1 1 1220.5 16528 2062 16327 25253 32709 32709 1 SLLSNDLK Unmodified 888.49165 0.49164694 1899 Q16666-3;Q16666-2;Q16666;Q16666-6;Q6K0P9-6;Q6K0P9-5;Q6K0P9-4;Q6K0P9-3;Q6K0P9-2;Q6K0P9 IFI16;PYHIN1 Gamma-interferon-inducible protein 16;Pyrin and HIN domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 52.254 52.254 2 0.00091939 14412 TMT1-6 97.431 30.399 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16529 1899 16328 25254 32710 32710 1 SLLSNLDEVK Unmodified 1116.6027 0.60265396 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6 0 1 61.757 61.757 2 3.638E-06 18785 TMT1-5 125.74 49.641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16530 2267 16329 25255 32711 32711 1 SLLSNLDEVKK Unmodified 1244.6976 0.69761697 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 7 0 1 56.137 56.137 3 0.00067193 15966 TMT1-6 94.402 63.852 730.28 864.42 782.75 734.49 774.02 845.64 689 871 805 728 800 814 1 1 1 1 1 1 64539 16531 2267 16330 25256 32712 32712 1 SLLSSTSTTTK Unmodified 1124.5925 0.5924832 118 O14974-4;O14974;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 8 0 1 44.252 44.252 2 9.6146E-05 11350 TMT1-7 113.47 62.563 46.622 89.027 23.756 45.914 40.513 99.048 44 87 29 44 44 94 1 1 1 1 1 1 6294.7 16532 118 16331 25257 32713 32713 1 SLLTTFKK Phospho (STY) 1016.5307 0.53074837 1995 Q5VYS8-4;Q5VYS8-6;Q5VYS8 ZCCHC6 Terminal uridylyltransferase 7 yes no 0 0 0 1 1 9 0 1 52.987 52.987 3 0.029088 12975 TMT1-8 51.854 17.162 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16533 1995 16332 25258 32714 32714 19 1 SLLVIPNTLAVNAAQDSTDLVAK Unmodified 2352.29 0.2900406 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 7.33 0.471 2 1 81.591 81.591 3;4 3.4097E-10 25936 TMT1-6 76.889 59.065 130.26 197.74 120.8 189.05 142.21 235.79 123 196 131 182 152 225 3 3 3 3 3 3 41005 16534 770 16333 25259;25260;25261 32715;32716;32717;32718 32716 4 SLLVQTK Unmodified 787.48035 0.48035398 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 8.5 0.5 1 1 46.918 46.918 2 0.0070195 12305 TMT1-7 130.27 57.233 229.88 307.18 237.2 234.85 301.84 247.23 217 307 247 233 307 240 2 2 2 2 2 2 27769 16535 1061 16334 25262;25263 32719;32720 32719 2 SLLVTELGSSR Unmodified 1160.6401 0.6401021 935 P29218;P29218-3;O55023 IMPA1;Impa1 Inositol monophosphatase 1 yes no 0 0 0 0 0 6.5 0.5 1 1 56.027 56.027 2 9.6083E-09 15921 TMT1-6 163.65 112.75 222.34 352.94 203.4 228.48 282.94 288.27 210 349 218 225 290 278 2 2 2 2 2 2 33588 16536 935 16335 25264;25265 32721;32722 32722 2 SLLVVSDLFTER Unmodified 1377.7504 0.75038083 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 7 0 1 78.005 78.005 2 0.001746 24505 TMT1-6 88.596 38.556 38.226 27.54 44.156 36.074 34.165 53.391 36 29 44 36 36 51 1 1 1 1 1 1 4721.8 16537 1105 16336 25266 32723 32723 1 SLMDHTIPEV Unmodified 1140.5485 0.5485099 80 O00560-3;O00560;O00560-2 SDCBP Syntenin-1 yes no 0 0 0 0 0 4 0 1 58.432 58.432 2 0.0070164 17598 TMT1-3 58.782 40.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16538 80 16337 25267 32724 32724 1 SLMFMQWGQLLDHDLDFTPEPAAR Unmodified 2817.3255 0.3254566 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 8 0 2 88.702 88.702 3;4 4.1211E-24 28673 TMT1-7 127.92 108.03 39.286 51.173 26.409 38.178 36.617 84.235 37 51 29 37 37 80 2 2 2 2 1 2 12670 16539 489 16338 25268;25269 32725;32726;32727 32726 3 SLMPYFLLTQAVR Unmodified 1537.8327 0.83267067 162 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 0 9 0 2 81.602 81.602 2;3 0.0002632 24148 TMT1-8 80.469 55.172 45.42 64.999 65.704 35.444 57.485 45.264 43 65 66 37 58 44 2 2 2 2 2 2 12954 16540 162 16339 25270;25271 32728;32729 32728 2 SLNDITAK Unmodified 860.46035 0.46034682 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 6 0 1 46.754 46.754 2 0.0058484 12856 TMT1-5 113.22 41.996 274.4 356.55 287.13 354.22 247.78 412.93 259 357 301 344 266 394 1 1 1 1 1 1 55985 16541 1148 16340 25272 32730 32730 1 SLNFVSTLLQITMSEQLDLPVR Unmodified 2503.3356 0.33561058 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 9 0 1 104.18 104.18 3 0.0052029 32493 TMT1-8 44.052 33.459 0 15.704 15.288 0 6.8161 14.729 0 15 15 0 7 14 0 1 1 0 1 1 2108.6 16542 352 16341 25273 32731 32731 1 SLNILTAFQK Unmodified 1133.6445 0.64445919 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 9 0 2 71.197 71.197 2;3 1.0371E-08 20219 TMT1-8 168.74 102.3 221.86 335.41 299.18 190.92 291.36 337.07 210 334 304 196 298 324 2 2 2 2 2 2 126990 16543 944 16342 25274;25275 32732;32733 32733 2 SLNLNIFLK Unmodified 1060.6281 0.62808085 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 9 0 1 74.131 74.131 2 1.5309E-05 21274 TMT1-8 159.37 88.449 146.67 127.35 128.48 109.53 103.52 159.08 138 131 131 109 109 152 1 1 1 1 1 1 16826 16544 1916 16343 25276 32734 32734 1 SLNQSLAEWK Unmodified 1174.5982 0.59823728 1300 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 0 7 0 1 58.177 58.177 3 0.00031683 16762 TMT1-6 101.93 87.242 92.385 101.02 76.753 73.64 83.711 113.81 87 102 80 73 87 109 1 1 1 1 1 1 12082 16545 1300 16344 25277 32735 32735 1 SLNTGIITVQNYGSHVPPK Unmodified 2024.0691 0.069089203 101 O14672;O14672-2 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes no 0 0 0 0 0 8 0 2 55.338 55.338 3 6.1294E-06 15639 TMT1-7 65.924 34.691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16546 101 16345 25278;25279 32736;32737 32736 2 SLNVESNFITGVGILALIDALR Unmodified 2314.2896 0.28964667 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 9 0 1 106.67 106.67 3 5.6733E-15 33298 TMT1-8 95.926 80.611 7.416 11.094 6.5567 7.0545 10.936 7.1499 7 11 7 7 11 7 1 1 1 1 1 1 3622.5 16547 2788 16346 25280 32738 32738 1 SLNVESNFITGVGILALIDALRDNETLAELK Unmodified 3327.7926 0.79258658 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 9 0 1 104.03 104.03 4 8.4082E-06 32442 TMT1-8 53.895 29.799 0 15.709 15.006 6.3293 22.721 0 0 15 15 7 22 0 0 1 1 1 1 0 1723.1 16548 2788 16347 25281 32739 32739 1 SLPADILYEDQQCLVFR Unmodified 2066.0143 0.014276441 2565 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 0 5 0 1 76.01 76.01 3 3.2866E-14 24146 TMT1-4 126.16 108.27 15.857 21.981 21.428 21.937 44.254 22.189 15 22 22 22 44 22 1 1 1 1 1 1 26357 16549 2565 16348 25282 32740 32740 1 SLPCDICK Unmodified 991.44669 0.44668736 538 P07602;P07602-2;P07602-3 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 0 6 0 1 46.926 46.926 2 0.037173 12910 TMT1-5 78.192 47.622 84.482 146.85 103.81 109.74 170.5 188.08 80 145 109 109 174 181 1 1 1 1 1 1 21676 16550 538 16349 25283 32741 32741 1 SLPELAQHK Unmodified 1021.5556 0.55564418 2401 Q96FH0-2;Q96FH0 MEF2BNB Protein MEF2BNB yes no 0 0 0 0 0 6 0 1 42.097 42.097 3 0.0046912 11024 TMT1-5 76.345 49.747 84.619 115.93 107.02 79.349 91.034 106.13 80 116 109 80 94 102 1 1 1 1 1 1 4632.4 16551 2401 16350 25284 32742 32742 1 SLPGPAPCLK Unmodified 1038.5532 0.55320134 1552 Q01433-2;Q01433 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 8 0 1 51.17 51.17 2 0.00071048 14054 TMT1-7 109.11 52.988 77.652 79.104 46.672 75.7 69.507 98.221 73 80 51 73 73 94 1 1 1 1 1 1 10824 16552 1552 16351 25285 32743 32743 1 SLPGSAPPLTEKEVENVFVQLSLAFR Unmodified 2827.512 0.51199504 3056 Q9Y6F6-8;Q9Y6F6-3;Q9Y6F6-5;Q9Y6F6-1;Q9Y6F6-2;Q9Y6F6-4;Q9Y6F6;Q9Y6F6-7;Q9Y6F6-6 MRVI1 Protein MRVI1 yes no 0 0 0 0 1 9 0 1 93.031 93.031 4 0.014344 28586 TMT1-8 40.428 27.489 23.415 21.599 13.781 23.225 0 23.452 22 22 15 22 0 22 1 1 1 1 0 1 1751.9 16553 3056 16352 25286 32744 32744 1 SLPGSLANVVK Unmodified 1083.6288 0.62880913 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 8.75 0.433 1 3 58.691 58.691 2;3 6.9453E-17 17042 TMT1-7 188.04 124.48 1247.9 1540.7 1392.9 1103.3 1142.2 1936.3 1178 1549 1424 1105 1204 1847 4 4 4 4 4 4 158250 16554 1684 16353 25287;25288;25289;25290 32745;32746;32747;32748;32749;32750 32746 6 SLPISLVFLVPVR Unmodified 1438.8912 0.89117182 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 9 0 2 88.693 88.693 2;3 2.0962E-12 26957 TMT1-8 136.49 96.385 61.083 226.49 80.137 65.437 100.29 129.32 58 218 88 65 103 124 1 3 2 2 3 3 23450 16555 647 16354 25291;25292 32751;32752;32753 32753 3 SLPLCLQLYAPGLSPDTIMECAMGDR Unmodified 2907.3639 0.36389229 679 P13284 IFI30 Gamma-interferon-inducible lysosomal thiol reductase yes yes 0 0 0 0 0 7.67 0.471 1 2 92.147 92.147 3;4 0.001306 29882 TMT1-7 43.241 39.054 23.373 44.889 21.008 31.192 18.391 78.359 22 44 22 30 21 74 2 3 2 2 2 3 7825.5 16556 679 16355 25293;25294;25295 32754;32755;32756 32756 3 SLPQEWLWCETWCDDASK Unmodified 2309.9722 0.97215363 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 6 0 1 79.36 79.36 3 3.9993E-05 25675 TMT1-5 77.39 61.969 108.13 106.51 130.27 77.543 113.38 127.88 102 109 130 80 116 123 2 2 2 2 2 2 10425 16557 2789 16356 25296 32757;32758 32757 2 SLPSVETLGCTSVICSDK Unmodified 1951.9231 0.92307817 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 5.67 0.471 1 2 65.083 65.083 3;4 1.9538E-19 19663 TMT1-5 136.36 119.93 399.31 559 401.99 379.31 467.71 584.68 377 557 420 377 483 561 4 4 4 4 4 4 120340 16558 2344;748 16357 25297;25298;25299 32759;32760;32761;32762 32760 4 SLPYNQPGTCYTLVALPK Unmodified 2021.0292 0.029198224 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 8 0 1 68.028 68.028 3 2.6518E-05 20709 TMT1-7 58.49 33.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16559 3047 16358 25300 32763 32763 1 SLQALGEVIEAELR Unmodified 1526.8304 0.83042206 2960 Q9Y285-2;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 0 5 0 2 83.941 83.941 2;3 9.3378E-07 27247 TMT1-4 108.97 66.76 100.63 130.79 108.03 59.264 99.821 120.81 95 131 110 58 102 116 3 3 3 2 3 3 16788 16560 2960 16359 25301;25302 32764;32765;32766 32764 3 SLQAQLQR Unmodified 942.52468 0.52467841 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 6 0 1 37.238 37.238 2 0.0030189 9055 TMT1-5 133.68 24.756 184.27 275.12 174.79 154.07 203.99 189.26 174 273 184 154 208 183 1 1 1 1 1 1 36991 16561 2744 16360 25303 32767 32767 1 SLQDIIAILGMDELSEEDKLTVSR Unmodified 2674.3735 0.37351223 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 1 7 0.894 2 1 2 92.929 92.929 3;4 1.5245E-18 30106 TMT1-6 115.11 90.09 208.52 304.6 223.28 164.66 242.62 301.15 197 303 231 167 248 289 7 7 7 7 6 7 55712 16562 508 16361 25304;25305;25306;25307;25308 32768;32769;32770;32771;32772;32773;32774 32771 7 SLQEEHVAVAQLR Unmodified 1478.7841 0.78414057 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 41.743 41.743 3 5.0086E-11 10990 TMT1-3 136.01 97.648 161.13 341.89 220.57 204.9 262.11 286.74 153 335 232 204 269 276 2 2 2 2 2 2 37993 16563 1833 16362 25309 32775;32776 32775 2 SLQELFLAHILSPWGAEVK Unmodified 2137.1572 0.15717593 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 2 86.411 86.411 3;4 1.1138E-15 26066 TMT1-8 114.46 83.918 108.16 130.33 105.33 95.313 119.34 143.7 102 131 109 95 123 138 2 2 2 2 2 2 26798 16564 606 16363 25310;25311 32777;32778 32777 2 SLQEQADAAEER Unmodified 1345.611 0.61098681 594 P09493-5 yes yes 0 0 0 0 0 2 0.707 1 2 1 36.016 36.016 2;3 6.2619E-44 9387 TMT1-1 225.19 170.76 266.67 360.77 320.28 309.48 313.08 368.43 252 361 330 306 325 354 5 5 5 5 5 5 195850 16565 594 16364 25312;25313;25314;25315 32779;32780;32781;32782;32783 32780 5 SLQESLQK Unmodified 931.49746 0.4974606 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 6 0 1 44.154 44.154 2 0.004271 11841 TMT1-5 126.24 33.55 108.5 107.52 68.338 81.927 76.55 98.02 102 109 73 80 80 94 1 1 1 1 1 1 9640.3 16566 1708 16365 25316 32784 32784 1 SLQLEEWQAK Unmodified 1230.6245 0.62445203 2681 Q9HBI0;Q9HBI0-3;Q9HBI0-2 PARVG Gamma-parvin yes no 0 0 0 0 0 6 0 1 57.75 57.75 3 0.0077077 17207 TMT1-5 45.829 29.939 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16567 2681 16366 25317 32785 32785 1 SLQLQLQAPSGNTVPAR Unmodified 1778.9639 0.96389585 305 O75843 AP1G2 AP-1 complex subunit gamma-like 2 yes yes 0 0 0 0 0 8 0 1 55.869 55.869 3 1.502E-05 15943 TMT1-7 82.01 61.057 46.5 64.944 64.664 58.749 42.049 37.176 44 65 66 58 44 36 1 1 1 1 1 1 5151.2 16568 305 16367 25318 32786 32786 1 SLQQAQQQLEEVR Unmodified 1555.7954 0.79543354 2651 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog yes yes 0 0 0 0 0 4 0 1 51.659 51.659 2 6.8067E-11 14931 TMT1-3 145.83 108.24 46.305 88.146 77.743 73.97 63.043 45.105 44 87 80 73 65 44 1 1 1 1 1 1 13677 16569 2651 16368 25319 32787 32787 1 SLQQLAEER Unmodified 1072.5513 0.55128709 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3.5 0.5 1 1 45.401 45.401 2 0.00016027 12403 TMT1-3 115.78 61.256 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16570 1737 16369 25320;25321 32788;32789 32789 2 SLQSDLEAEQVK Unmodified 1345.6725 0.67252444 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 52.069 52.069 3 0.016179 15073 TMT1-3 53.377 15.383 107.93 168.54 111.68 71.266 99.269 120.82 102 167 116 73 102 116 1 1 1 1 1 1 7296.5 16571 1138 16370 25322 32790 32790 1 SLQSLLGPSSK Unmodified 1115.6186 0.61863837 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 9 0 1 59.01 59.01 2 3.5187E-10 15318 TMT1-8 148.18 90.634 77.453 102.29 60.473 74.729 77.394 83.072 73 102 65 73 80 80 1 1 1 1 1 1 8277.3 16572 1342 16371 25323 32791 32791 1 SLQSVAEER Unmodified 1017.5091 0.50908792 1389 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 0 3 0 1 37.779 37.779 2 0.00027699 10439 TMT1-2 142.36 86.857 306.84 456.68 340 291.71 439.9 293.39 290 454 353 293 443 287 1 1 1 1 1 1 51335 16573 1389 16372 25324 32792 32792 1 SLSAIDR Unmodified 760.40792 0.40791731 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 5 0 1 37.267 37.267 2 0.007429 8961 TMT1-4 77.741 19.136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16574 373 16373 25325 32793 32793 1 SLSAIYLEK Unmodified 1022.5648 0.56481189 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 59.207 59.207 2 0.00016745 17167 TMT1-6 147.51 94.792 245.84 466.7 304.73 251.13 442.85 444.68 233 459 319 254 449 429 2 2 2 2 2 2 16488 16575 1833 16374 25326 32794;32795 32795 2 SLSALGNVISALAEGSTYVPYR Unmodified 2267.1798 0.17976186 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 9 0 1 91.622 91.622 3 3.3655E-26 27969 TMT1-8 130.37 102.73 39.122 55.036 50.614 23.982 17.334 42.145 37 55 51 25 18 40 2 2 2 2 1 2 16562 16576 998 16375 25327 32796;32797 32796 2 SLSAQEEK Unmodified 890.43453 0.434526 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 34.553 34.553 2 0.028656 8194 TMT1-3 82.749 25.646 68.51 109.44 114.74 86.685 83.368 106.35 65 109 116 87 87 102 1 1 1 1 1 1 8582.7 16577 1737 16376 25328 32798 32798 1 SLSCRPPMVK Unmodified 1173.5998 0.59983396 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 9 0 1 40.216 40.216 3 0.012794 8202 TMT1-8 58.37 32.431 84.759 116.32 83.136 80.636 98.288 136.84 80 116 87 80 102 131 1 1 1 1 1 1 8650 16578 471 16377 25329 32799 32799 1 SLSDALISLQMVYPR Unmodified 1691.8916 0.89164211 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 0 9 0 1 81.754 81.754 3 0.0062505 24207 TMT1-8 49.188 24.806 23.25 28.695 35.483 36.601 33.628 68.33 22 29 36 36 36 65 1 1 1 1 1 1 6747.1 16579 2963 16378 25330 32800 32800 1 SLSDLFR Unmodified 836.43922 0.43921744 274 O75410-10;O75410-5;O75410-4;O75410-6;O75410-3;O75410-7;O75410-9;O75410;O75410-2;O75410-8 TACC1 Transforming acidic coiled-coil-containing protein 1 yes no 0 0 0 0 0 8 0 1 62.111 62.111 2 0.039403 18346 TMT1-7 86.472 8.7316 77.327 109.5 75.609 89.6 52.357 122.16 73 109 80 87 58 116 1 1 1 1 1 1 11803 16580 274 16379 25331 32801 32801 1 SLSDTVEK Unmodified 877.43928 0.43927702 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 4 0 1 41.948 41.948 2 0.0042473 11103 TMT1-3 126.41 41.2 107.35 216.57 168.93 130.37 146.15 199.44 102 213 174 131 152 191 1 1 1 1 1 1 16097 16581 1762 16380 25332 32802 32802 1 SLSEGHPTAQHEK Unmodified 1419.6743 0.67425577 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 2 1 1 25.371 25.371 4 5.5526E-05 4625 TMT1-3 96.059 73.18 84.985 85.648 71.177 50.32 62.775 84.555 80 87 73 51 65 81 2 2 2 2 2 2 4719 16582 1194 16381 25333;25334 32803;32804 32803 2 SLSGLILK Unmodified 829.5273 0.52730417 2336 Q92973-2;Q92973;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 yes no 0 0 0 0 0 9 0 1 62.106 62.106 2 0.013151 16504 TMT1-8 84.568 16.587 208.69 282.4 213.7 191.08 204.69 363 197 282 222 190 216 346 1 1 1 1 1 1 25672 16583 2336 16382 25335 32805 32805 1 SLSGLLPAQTSLEYALLDAVTQQEK Unmodified 2674.4065 0.40652692 2197 Q8NBF2 NHLRC2 NHL repeat-containing protein 2 yes yes 0 0 0 0 0 7 0 1 94.091 94.091 4 4.2741E-19 30568 TMT1-6 104.41 97.91 23.244 28.678 36.51 13.552 35.457 45.892 22 29 36 15 36 44 1 1 1 1 1 1 9225.5 16584 2197 16383 25336 32806 32806 1 SLSNTKPTVNEHDLLK Unmodified 1794.9476 0.94757708 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 1 7 0 1 46.57 46.57 4 5.2896E-12 12169 TMT1-6 126.77 107.22 267.85 495.01 368.68 353.82 417.46 467.79 254 488 384 351 430 450 2 2 2 2 2 2 26616 16585 267 16384 25337 32807;32808 32808 2 SLSNVIAHEISHSWTGNLVTNK Unmodified 2406.2292 0.22917167 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 8.5 0.5 1 1 64.019 64.019 4 2.9688E-10 17285 TMT1-8 80.061 56.614 129.89 212.89 170.53 120.95 177.02 196.42 123 211 175 123 181 189 2 2 2 2 2 2 27717 16586 608 16385 25338;25339 32809;32810 32810 2 SLSPQDEQCAVEEALDWR Unmodified 2131.948 0.94804737 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 3 0 1 73.45 73.45 3 1.436E-06 24487 TMT1-2 89.846 76.728 7.4403 6.8445 6.089 23.275 21.708 6.8426 7 7 7 22 22 7 1 1 1 1 1 1 2034.6 16587 1999 16386 25340 32811 32811 1 SLSSPTDNLELSLR Unmodified 1530.789 0.78895118 2978 Q9Y2X7-3;Q9Y2X7 GIT1 ARF GTPase-activating protein GIT1 yes no 0 0 0 0 0 5 0 1 60.261 60.261 2 2.5364E-36 18018 TMT1-4 177.16 107.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16588 2978 16387 25341 32812 32812 1 SLSSQASK Unmodified 806.4134 0.41339662 2646 Q9H479 FN3K Fructosamine-3-kinase yes yes 0 0 0 0 0 6 0 1 32.061 32.061 2 0.004271 7014 TMT1-5 126.24 49.396 99.863 107.97 76.323 73.079 114.91 89.463 94 109 80 73 116 87 1 1 1 1 1 1 8286.3 16589 2646 16388 25342 32813 32813 1 SLSVNEMTLSTLK Unmodified 1421.7436 0.74358089 1652 Q12882 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 7 0 1 64.724 64.724 3 0.00060227 19337 TMT1-6 60.196 36.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16590 1652 16389 25343 32814 32814 1 SLTEYLQNVEQK Unmodified 1450.7304 0.73037367 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 6 0 1 64.597 64.597 3 1.1363E-07 19862 TMT1-5 120.57 102.16 54.206 64.974 31.759 67.818 70.933 67.266 51 65 36 65 73 65 1 1 1 1 1 1 15040 16591 998 16390 25344 32815 32815 1 SLTNDWEDHLAVK Unmodified 1526.7365 0.73652168 545;561 P08238;P07900;P07900-2 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 0 0 0 0 0 6 0.816 1 1 1 55.937 55.937 3 9.0454E-12 16295 TMT1-4 148.72 108.66 1195.1 1600.9 1571.6 1218.1 1561.3 1608.8 1130 1605 1597 1227 1599 1551 4 4 4 4 4 4 329070 16592 561;545 16391 25345;25346;25347 32816;32817;32818;32819 32816 4 SLTSAYQHK Acetyl (N-term) 1075.5298 0.52982336 1314 P55160 NCKAP1L Nck-associated protein 1-like yes yes 1 0 0 0 0 4 0 1 40.267 40.267 2 0.0052237 10426 TMT1-3 75.854 63.266 170.12 171.7 117.42 101.09 180.82 203.78 160 174 123 102 184 196 1 1 1 1 1 1 26877 16593 1314 16392 25348 32820 32820 1 SLTSNHQK Unmodified 913.46174 0.4617438 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 5.75 2.95 1 1 1 1 25.101 25.101 3 4.0857E-05 4146 TMT1-8 157.91 99.096 299.05 290.93 166.73 203.59 211.64 265.79 281 295 180 199 220 255 5 5 5 5 5 5 22861 16594 372 16393 25349;25350;25351;25352 32821;32822;32823;32824;32825 32825 5 SLTSWFLVSSGGTR Acetyl (Protein N-term) 1538.7729 0.77290718 1971 Q5SW79-2;Q5SW79-3;Q5SW79 CEP170 Centrosomal protein of 170 kDa yes no 0 1 0 0 0 9 0 1 88.049 88.049 2 0.00026476 26687 TMT1-8 55.452 35.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16595 1971 16394 25353 32826 32826 1 SLTTAFFR Unmodified 941.49707 0.49706667 50;1239 O00194;P51159-2;P51159 RAB27B;RAB27A Ras-related protein Rab-27B;Ras-related protein Rab-27A no no 0 0 0 0 0 9 0 1 58.252 58.252 2 0.0017308 15071 TMT1-8 138.83 72.738 685.25 813.64 819.19 670 775.33 893.57 647 821 833 671 800 859 1 1 1 1 1 1 168770 16596 50;1239 16395 25354 32827 32827 1 SLTTLGLVISALADQSAGK Unmodified 1844.0255 0.025493054 2716 Q9NQT8 KIF13B Kinesin-like protein KIF13B yes yes 0 0 0 0 0 9 0 1 92.478 92.478 3 3.4478E-08 28272 TMT1-8 73.138 34.25 23.293 21.26 34.514 68.363 33.23 37.428 22 22 36 65 36 36 1 1 1 1 1 1 6843.5 16597 2716 16396 25355 32828 32828 1 SLTYDEVISFVPPPLDQEEMES Unmodified 2524.1567 0.15670274 1890 Q16539;Q16539-2 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 4 0 1 94.192 94.192 3 0.0040436 30874 TMT1-3 42.172 30.044 0 0 7.574 0 4.0415 4.1487 0 0 7 0 4 4 0 0 1 0 1 1 1540.3 16598 1890 16397 25356 32829 32829 1 SLTYYTNLQVK Unmodified 1328.6976 0.69761697 328 O94886 TMEM63A CSC1-like protein 1 yes yes 0 0 0 0 0 8 0 1 58.927 58.927 3 2.1157E-05 17107 TMT1-7 112.83 51.48 191.74 228.08 222.15 173.53 181.33 244.27 181 230 226 174 189 234 1 1 1 1 1 1 25093 16599 328 16398 25357 32830 32830 1 SLVASLAEPDFVVTDFAK Unmodified 1907.988 0.98804492 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 6.25 0.433 3 1 82.703 82.703 2;3;4 1.4178E-30 26959 TMT1-5 178.32 142.78 254.17 210.32 205.22 206.22 240.59 241.51 239 217 211 204 247 233 4 4 4 4 4 4 138640 16600 845 16399 25358;25359;25360;25361 32831;32832;32833;32834 32832 4 SLVATGNLLDLEETAK Unmodified 1672.8883 0.88833087 1972 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 yes yes 0 0 0 0 0 5 0 1 70.792 70.792 3 4.796E-17 22139 TMT1-4 141.55 136.12 61.702 56.863 41.171 60.94 0 69.29 58 58 44 58 0 65 1 1 1 1 0 1 9806.1 16601 1972 16400 25362 32835 32835 1 SLVDLTAVDVPTR Unmodified 1384.7562 0.75619449 281 O75489;O75489-2 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 0 0 0 0 0 6 0 1 64.974 64.974 3 0.001236 20037 TMT1-5 74.475 52.717 69.161 56.203 50.561 20.214 43.527 45.662 65 58 51 22 44 44 1 1 1 1 1 1 9142.9 16602 281 16401 25363 32836 32836 1 SLVDTVYALKDEVQELR Unmodified 1977.0419 0.0418714 1755 Q14155-1;Q14155-5 ARHGEF7 Rho guanine nucleotide exchange factor 7 yes no 0 0 0 0 1 7 0 1 82.802 82.802 3 0.00037372 26370 TMT1-6 73.953 47.145 46.479 88.631 48.04 35.694 42.046 68.09 44 87 51 36 44 65 1 1 1 1 1 1 7292.1 16603 1755 16402 25364 32837 32837 1 SLVDTVYALKDEVR Unmodified 1606.8566 0.85663681 1821 Q15052;Q15052-2 ARHGEF6 Rho guanine nucleotide exchange factor 6 yes no 0 0 0 0 1 7 0 1 71.289 71.289 3 1.4473E-05 21919 TMT1-6 100.13 76.658 146.56 181.02 100.72 126.09 124.99 181.92 138 181 109 123 131 174 1 1 1 1 1 1 13936 16604 1821 16403 25365 32838 32838 1 SLVEAISLWNEGVLAADK Acetyl (Protein N-term) 1956.0204 0.020407676 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 1 0 0 0 6 0 1 108.13 108.13 3 3.314E-08 34341 TMT1-5 47.09 29.39 5.3231 3.8337 3.7913 6.2811 2.7057 4.1868 5 4 4 6 3 4 1 1 1 1 1 1 1985.1 16605 799 16404 25366 32839 32839 1 SLVEAISLWNEGVLAADKK Acetyl (N-term) 2084.1154 0.11537069 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 1 0 0 0 1 7 0 1 95.028 95.028 3 6.0569E-12 30932 TMT1-6 54.368 45.272 46.501 66.026 63.532 58.413 63.502 52.554 44 66 65 58 65 51 2 2 2 2 2 2 11971 16606 799 16405 25367 32840;32841 32841 2 SLVEASSSGVSVLSLCEK Unmodified 1850.9295 0.92954376 2943 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 0 0 0 0 0 7 0 1 66.809 66.809 3 1.5308E-19 20180 TMT1-6 137.61 121.31 77.321 101.93 82.953 104.97 83.589 75.433 73 102 87 102 87 73 1 1 1 1 1 1 15399 16607 2943 16406 25368 32842 32842 1 SLVKPITQLLGR Unmodified 1323.8238 0.82382054 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 1 9 0 1 62.169 62.169 3 4.4471E-06 16580 TMT1-8 101.33 72.947 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16608 647 16407 25369 32843 32843 1 SLVNIPADGVTVDPALLPPACLGALGDLSVEQPVQFR Unmodified 3828.0132 0.013160814 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 7 0 1 94.087 94.087 4 0.013001 30552 TMT1-6 28.169 18.948 7.436 6.8326 6.8165 6.9602 15.129 7.0303 7 7 7 7 15 7 1 1 1 1 1 1 3144.2 16609 1229 16408 25370 32844 32844 1 SLVPAAELLESR Unmodified 1283.7085 0.70851601 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 2 64.689 64.689 2;3 8.5141E-06 19738 TMT1-4 111.12 84.008 99.637 138.64 88.311 102.75 126.59 136.03 94 138 94 101 130 131 2 2 2 2 2 2 33112 16610 1833 16409 25371;25372 32845;32846 32846 2 SLVQGELVTASK Unmodified 1230.682 0.68196691 1023 P35611-2;P35611-6;P35611;P35611-3 ADD1 Alpha-adducin yes no 0 0 0 0 0 6 0 1 53.079 53.079 3 0.0004464 15363 TMT1-5 65.809 25.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16611 1023 16410 25373 32847 32847 1 SLVSVTK Unmodified 732.43815 0.43815481 561;1955 P08238;Q58FF7;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 0 8 0 1 45.43 45.43 2 0.00092758 11787 TMT1-7 150.17 32.231 1632.5 2972.2 1726.4 1555.8 2115.9 2583.3 1545 2924 1832 1554 2176 2480 1 1 1 1 1 1 227120 16612 561;1955 16411 25374 32848 32848 1 SLWDQGNFPLIIK Unmodified 1529.8242 0.82421447 417 P01730 CD4 T-cell surface glycoprotein CD4 yes yes 0 0 0 0 0 9 0 1 79.767 79.767 3 0.00013407 23498 TMT1-8 89.013 49.747 38.092 58.466 40.507 76.354 54.285 83.731 36 58 44 73 58 80 1 1 1 1 1 1 6141.2 16613 417 16412 25375 32849 32849 1 SLWGLVSK Acetyl (Protein N-term) 930.51747 0.51746776 1092 P42226 STAT6 Signal transducer and activator of transcription 6 yes yes 0 1 0 0 0 8 0 1 81.913 81.913 2 0.0017847 26131 TMT1-7 69.198 47.67 61.447 72.341 71.035 74.109 76.91 98.009 58 73 73 73 80 94 1 1 1 1 1 1 10948 16614 1092 16413 25376 32850 32850 1 SLWNDPGIQECYDR Unmodified 1751.7573 0.75733347 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 4 0 2 58.187 58.187 2;3 7.0271E-11 17489 TMT1-3 127.07 100.1 183.71 284.33 262.64 209.97 207.68 311.74 174 283 268 210 218 298 2 2 2 2 2 2 47451 16615 1211 16414 25377;25378 32851;32852 32852 2 SLWSSLCLGPAPAPPGPVSPEGR Unmodified 2331.1682 0.16815132 2517 Q9BRR6-6;Q9BRR6-2;Q9BRR6 ADPGK ADP-dependent glucokinase yes no 0 0 0 0 0 9 0 1 73.894 73.894 3 1.5678E-06 21209 TMT1-8 67.877 52.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16616 2517 16415 25379 32853 32853 1 SLYASSPGGVYATR Unmodified 1427.7045 0.70449327 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 7.25 1.79 1 1 2 45.919 45.919 2;3 1.2948E-34 12469 TMT1-5 203.61 108.11 539.17 636.83 273.92 340.38 444.46 552.3 507 637 305 334 458 530 4 4 4 4 4 4 104520 16617 575 16416 25380;25381;25382;25383 32854;32855;32856;32857 32855 4 SLYDDLGVETSDSK Acetyl (N-term) 1569.7046 0.70461243 2418 Q96I25 RBM17 Splicing factor 45 yes yes 1 0 0 0 0 2 0 1 69.632 69.632 2 2.3095E-05 22476 TMT1-1 50.207 30.892 7.3304 30.283 4.6859 23.216 29.268 0 7 29 7 22 29 0 1 1 1 1 1 0 2863.9 16618 2418 16417 25384 32858 32858 1 SLYHDISGDTSGDYR Unmodified 1684.7329 0.73289286 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 3 0 1 43.395 43.395 3 1.0493E-07 12669 TMT1-2 107.97 102.76 69.157 48.639 57.559 43.321 71.253 90.709 65 51 58 44 73 87 1 1 1 1 1 1 20883 16619 1234 16418 25385 32859 32859 1 SLYHDISGDTSGDYRK Unmodified 1812.8279 0.82785588 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 1 5 0 1 41.501 41.501 4 0.00063385 10626 TMT1-4 67.136 49.884 122.05 230.83 211.48 150.05 185.06 228.17 116 228 215 152 191 219 1 1 1 1 1 1 18154 16620 1234 16419 25386 32860 32860 1 SLYPLTFIQVK Unmodified 1307.7489 0.74892426 739 P16278;P16278-3;P16278-2 GLB1 Beta-galactosidase yes no 0 0 0 0 0 9 0 1 75.595 75.595 2 7.4079E-13 21848 TMT1-8 169.37 96.114 30.678 35.504 43.728 35.808 49.626 60.412 29 36 44 36 51 58 1 1 1 1 1 1 6310.1 16621 739 16420 25387 32861 32861 1 SLYPSLEDLK Acetyl (Protein N-term) 1205.618 0.61796967 80 O00560-3;O00560;O00560-2 SDCBP Syntenin-1 yes no 0 1 0 0 0 4 0 1 76.955 76.955 2 0.0005532 24889 TMT1-3 68.016 32.721 68.692 118.58 76.544 57.356 78.45 75.579 65 117 80 58 80 73 2 2 2 2 2 2 13603 16622 80 16421 25388 32862;32863 32863 2 SLYSFIK Unmodified 856.46945 0.46945494 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 9 0 1 62.405 62.405 3 0.0055933 16673 TMT1-8 81.297 28.614 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16623 598 16422 25389 32864 32864 1 SLYSMIK Unmodified 840.44153 0.44152563 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 9 0 1 57.272 57.272 2 0.0089662 14663 TMT1-8 144.83 61.032 384.07 705.3 495.34 371.54 642.83 551.97 364 695 514 378 649 535 1 1 1 1 1 1 52616 16624 555 16423 25390 32865 32865 1 SLYVAEYHSEPVEDEKP Unmodified 1990.916 0.91600218 895 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 1 3 0 2 50.506 50.506 3;4 8.4673E-09 15432 TMT1-2 104.2 89.886 115.66 144.89 95.073 135.03 132.42 166.78 109 145 102 131 138 160 2 2 2 2 2 2 34781 16625 895 16424 25391;25392 32866;32867 32866 2 SLYYASFLEVLVR Unmodified 1558.8395 0.83953018 303 O75822;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 0 9 0 2 87.286 87.286 2;3 1.4329E-05 26385 TMT1-8 103.69 74.959 39.146 50.783 50.305 36.643 42.515 53.153 37 51 51 37 44 51 2 2 2 2 2 2 6771.8 16626 303 16425 25393;25394 32868;32869 32868 2 SLYYYIQQDTK Unmodified 1420.6874 0.68744622 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 6.5 0.5 1 1 61.846 61.846 2;3 1.8918E-16 18760 TMT1-5 180.36 137.05 485.67 834.64 622.52 585.61 771.53 812.66 460 825 648 583 790 783 4 4 4 4 4 4 111650 16627 534 16426 25395;25396 32870;32871;32872;32873 32870 4 SMAASGNLGHTPFVDEL Unmodified 1744.809 0.80903469 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 5.5 1.5 1 1 63.725 63.725 3 2.4976E-05 18953 TMT1-6 61.962 56.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16628 851 16427 25397;25398 32874;32875 32875 2 SMAEDTINAAVK Unmodified 1248.602 0.60200203 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 50.963 50.963 2 5.0513E-08 14386 TMT1-4 113.03 47.619 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16629 1112 16428 25399 32876 32876 1 SMAVAAR Unmodified 704.36394 0.36394401 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 8 0 1 29.407 29.407 2 0.038519 5595 TMT1-7 86.866 22.303 54.253 53.232 33.85 36.701 33.477 72.599 51 54 36 36 36 69 1 1 1 1 1 1 3181.2 16630 1019 16429 25400 32877 32877 1 SMDFEEAER Unmodified 1112.4444 0.44443876 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 0 2 0 1 43.878 43.878 2 0.0016552 12491 TMT1-1 116.05 88.747 46.741 42.949 42.814 44.492 55.75 83.689 44 44 44 44 58 80 1 1 1 1 1 1 8197.9 16631 171 16430 25401 32878 32878 1 SMEAEMIQLQEELAAAER Unmodified 2047.9554 0.95544093 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 2.6 1.02 1 1 2 1 80.791 80.791 2;3 9.8794E-31 27100 TMT1-2 174.21 158.09 306.11 456.97 325.57 261.87 270.65 391.16 289 454 338 262 282 374 9 11 10 10 9 9 293840 16632 1019 16431 25402;25403;25404;25405;25406 32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889 32883 11 SMEAEMIQLQEELAAAER Oxidation (M) 2063.9504 0.95035556 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 3.12 0.781 2 3 3 70.552 70.552 3 7.7651E-10 23133 TMT1-2 108.75 89.039 287.5 402.51 285.39 329.88 268.98 420.22 271 401 301 322 284 401 11 13 13 13 12 12 80578 16633 1019 16431 25407;25408;25409;25410;25411;25412;25413;25414 32890;32891;32892;32893;32894;32895;32896;32897;32898;32899;32900;32901;32902;32903 32896 194;195 14 SMENYYQESGR Unmodified 1362.551 0.55102909 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 0 3 0 1 39.449 39.449 2 4.399E-05 11092 TMT1-2 92.866 77.295 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16634 1125 16432 25415 32904 32904 1 SMFAGVPTMR Unmodified 1095.5205 0.52052101 138 O15260;O15260-2 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 0 9 0 1 55.961 55.961 2 0.034771 14145 TMT1-8 65.535 27.232 92.376 92.356 85.589 56.969 70.369 98.196 87 94 87 58 73 94 1 1 1 1 1 1 8679.6 16635 138 16433 25416 32905 32905 1 SMLQATAEANNLAAAASAK Unmodified 1831.9098 0.90981137 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 0 7 0 1 63.231 63.231 3 1.6913E-08 18749 TMT1-6 76.492 55.034 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16636 2007 16434 25417 32906 32906 1 SMMGGGLAEIPGLSINFAK Unmodified 1891.9536 0.95359044 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 9 0 1 80.83 80.83 3 0.0015039 23877 TMT1-8 50.392 21.064 54.195 26.089 66.561 43.336 41.951 60.631 51 29 65 44 44 58 1 1 1 1 1 1 10143 16637 1250 16435 25418 32907 32907 1 SMMQDREDQSILCTGESGAGK Oxidation (M) 2314.9828 0.98279467 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 1 4 0 1 44.544 44.544 4 1.4049E-07 12169 TMT1-3 89.028 75.991 84.663 116.05 99.401 80.218 69.007 106.76 80 116 102 80 73 102 1 1 1 1 1 1 12376 16638 1019 16436 25419 32908 32908 196 1 SMMQDREDQSILCTGESGAGK Unmodified 2298.9879 0.98788005 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 4.33 0.471 2 1 48.773 48.773 3;4 6.7209E-14 13786 TMT1-3 112.56 92.117 522.49 654.82 538.01 461.87 586.41 733.73 493 657 555 462 605 704 3 3 3 3 3 3 92027 16639 1019 16436 25420;25421;25422 32909;32910;32911 32910 3 SMNSQYLK Unmodified 969.45897 0.45896661 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 7 0 1 42.768 42.768 2 0.011184 10651 TMT1-6 98.233 47.267 77.043 101.15 130.43 108.95 128.41 105.07 73 102 131 109 131 102 1 1 1 1 1 1 8193.9 16640 634 16437 25423 32912 32912 1 SMPWNVDTLSK Unmodified 1276.6122 0.61217279 1891 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 0 8 0 2 63.043 63.043 2;3 4.6809E-07 18781 TMT1-7 149.49 108.46 214.31 334.73 306.82 215.45 299.6 308.05 203 333 312 219 306 297 3 3 3 3 3 3 26523 16641 1891 16438 25424;25425 32913;32914;32915 32914 3 SMQNWHQLENLSNFIK Oxidation (M) 2003.9523 0.95234489 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 1 0 0 8 0 2 63.941 63.941 3;4 3.4092E-08 19097 TMT1-7 107.98 89.381 177.44 163.12 155.88 123.01 171.97 158.19 167 167 159 124 175 153 2 2 2 2 2 2 24375 16642 2463 16439 25426;25427 32916;32917 32916 295 2 SMQNWHQLENLSNFIK Unmodified 1987.9574 0.95743026 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 0 8.67 0.471 1 2 67.732 67.732 3 1.2212E-20 18746 TMT1-8 146.3 114.94 307.68 352.15 288.75 247.06 303.38 307.94 290 355 298 247 311 297 3 3 3 3 3 3 81385 16643 2463 16439 25428;25429;25430 32918;32919;32920;32921 32920 4 SMSHQAAIASQR Unmodified 1285.6197 0.61971778 1937 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 0 0 0 0 0 6 0 1 25.375 25.375 3 0.00076757 4572 TMT1-5 61.235 35.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16644 1937 16440 25431 32922 32922 1 SMSTEGLMK Unmodified 982.44635 0.44635301 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 6 0 1 47.409 47.409 2 0.01314 13140 TMT1-5 84.615 55.453 108.22 138.04 89.614 73.331 59.371 152.88 102 138 94 73 65 145 1 1 1 1 1 1 10155 16645 271 16441 25432 32923 32923 1 SMSVYCTPNKPSR Unmodified 1525.7017 0.70173285 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 1 8 0 1 38.98 38.98 3 1.2312E-05 9243 TMT1-7 106.58 83.692 84.605 108.34 115.8 62.539 85.284 82.846 80 109 116 65 87 80 1 1 1 1 1 1 10194 16646 748 16442 25433 32924 32924 1 SMSVYCTPTRPHPTGQGSK Unmodified 2089.9673 0.96734302 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 1 9 0 1 34.838 34.838 4 5.0143E-08 6393 TMT1-8 78.674 60.535 23.291 28.808 28.555 21.94 21.476 15.377 22 29 29 22 22 15 1 1 1 1 1 1 2398.5 16647 2344 16443 25434 32925 32925 1 SMTPAQADLEFLENAK Unmodified 1763.84 0.84000047 643 P11171-6;P11171-4;P11171-3;P11171-5;P11171-2;P11171;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 0 5 0 1 70.811 70.811 3 1.2008E-06 22140 TMT1-4 95.662 77.961 123.62 75.46 79.227 48.977 108.69 89.641 116 80 80 51 109 87 1 1 1 1 1 1 10506 16648 643 16444 25435 32926 32926 1 SMVAVMDSDTTGK Unmodified 1340.5952 0.59520209 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 5 0 1 52.94 52.94 2 7.4586E-21 15165 TMT1-4 149.23 109.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16649 475 16445 25436 32927 32927 1 SMVQYLK Unmodified 867.45242 0.45242467 1921 Q2TAA2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes yes 0 0 0 0 0 8 0 1 52.715 52.715 2 0.033063 14698 TMT1-7 89.298 22.616 77.069 85.036 139.71 92.29 112.96 120.43 73 87 138 94 116 116 1 1 1 1 1 1 10479 16650 1921 16446 25437 32928 32928 1 SMYEEEINETR Unmodified 1399.5926 0.59255956 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 2 0 1 43.744 43.744 2 4.9515E-07 12418 TMT1-1 149.17 117.23 38.131 58.573 33.953 29.02 34.746 45.913 36 58 36 29 36 44 1 1 1 1 1 1 10189 16651 816 16447 25438 32929 32929 1 SNAINIGLTTLPPVHVIK Unmodified 1886.0989 0.098932769 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 65.76 65.76 4 0.0015964 18029 TMT1-8 51.487 33.385 46.429 80.937 62.964 51.08 48.374 76.438 44 80 65 51 51 73 1 1 1 1 1 1 6145.3 16652 3042 16448 25439 32930 32930 1 SNDIDLEGFDSVVSSTEK Unmodified 1940.8851 0.88509599 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 4 0 1 69.244 69.244 3 6.7172E-08 21790 TMT1-3 96.917 79.428 54.079 80.808 39.822 59.827 63.437 52.556 51 80 44 58 65 51 1 1 1 1 1 1 14760 16653 2369 16449 25440 32931 32931 1 SNDPVATAFAEMLK Unmodified 1492.7232 0.7231798 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 0 6.5 0.5 1 1 78.948 78.948 3 2.8298E-10 25583 TMT1-5 119.54 101.45 193.34 185.21 170.72 122.59 146.88 188.75 182 189 174 124 152 181 3 3 3 3 3 3 31807 16654 2788 16450 25441;25442 32932;32933;32934 32933 3 SNEDVNSSELDEEYLIELEK Unmodified 2354.0649 0.064910845 2477 Q99614 TTC1 Tetratricopeptide repeat protein 1 yes yes 0 0 0 0 0 2 0 1 71.416 71.416 3 6.7333E-07 23108 TMT1-1 83.063 67.179 0 0 0 16.282 6.0309 15.818 0 0 0 15 7 15 0 0 0 1 1 1 2950.1 16655 2477 16451 25443 32935 32935 1 SNEFDYPSVGQLAHK Unmodified 1690.7951 0.79509919 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 6 0.816 1 1 1 53.34 53.34 3 0.00052547 15401 TMT1-5 74.12 53.456 283.08 417.93 398.99 333.96 331.04 543.81 268 417 407 333 349 519 3 3 3 3 3 3 58890 16656 485 16452 25444;25445;25446 32936;32937;32938 32937 3 SNEILTAIIQGMR Unmodified 1444.7708 0.77079869 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 9 0 2 78.426 78.426 2;3 5.7887E-11 22910 TMT1-8 128.1 83.233 84.762 128.2 72.498 60.55 95.83 113.46 80 127 77 61 98 109 2 2 2 2 2 2 35930 16657 1803 16453 25447;25448 32939;32940 32939 2 SNEYQLIDCAQYFLDK Unmodified 2005.9091 0.90914267 1469 P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 0 5 0 1 78.439 78.439 3 0.00065732 25157 TMT1-4 53.779 30.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16658 1469 16454 25449 32941 32941 1 SNFAEALAAHK Unmodified 1157.5829 0.58292157 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 7 0 1 47.987 47.987 3 3.7359E-05 12684 TMT1-6 108.72 75.492 449.47 494.37 501.83 381.22 514.33 534.31 424 501 509 385 526 515 1 1 1 1 1 1 131930 16659 530 16455 25450 32942 32942 1 SNFELLEK Unmodified 978.50221 0.50221163 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 5 0 1 57.139 57.139 2 0.0015645 16789 TMT1-4 86.898 20.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16660 1770 16456 25451 32943 32943 1 SNFGYNIPLK Unmodified 1151.5975 0.597509 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 0 8 0 2 59.51 59.51 2;3 0.003032 17354 TMT1-7 97.456 78.141 345.27 481.54 352.79 355.48 437.46 461.89 326 480 369 352 449 445 2 2 2 2 2 2 76367 16661 892 16457 25452;25453 32944;32945 32944 2 SNFKPSLLAQK Unmodified 1231.6925 0.69247202 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 1 9 0 1 50.034 50.034 3 0.00052246 11819 TMT1-8 84.352 18.632 176.67 267.83 196.29 216.54 184.83 206.86 167 266 206 212 193 199 1 1 1 1 1 1 15128 16662 2387 16458 25454 32946 32946 1 SNFLNCYVSGFHPSDIEVDLLK Unmodified 2553.221 0.22097475 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 0 8 0.816 1 1 1 78.726 78.726 3;4 1.3135E-12 24836 TMT1-7 92.792 72.135 354.63 367.63 319.07 317.52 412.58 506.3 334 373 330 315 425 486 4 4 4 4 4 4 79044 16663 1399 16459 25455;25456;25457 32947;32948;32949;32950;32951 32949 5 SNFLNCYVSGFHPSDIEVDLLKNGER Unmodified 3009.4291 0.42907005 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 1 7 0 1 73.461 73.461 4 0.013096 22786 TMT1-6 38.146 31.423 30.601 51.48 43.103 28.321 42.898 53.142 29 51 44 29 44 51 1 1 1 1 1 1 8398.4 16664 1399 16460 25458 32952 32952 1 SNFLPLLNIEFK Unmodified 1433.7919 0.79185171 1996 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 DENND4C DENN domain-containing protein 4C yes no 0 0 0 0 0 9 0 1 84.677 84.677 3 0.011325 25355 TMT1-8 53.051 24.095 46.706 50.407 42.36 44.642 49.22 60.423 44 51 44 44 51 58 1 1 1 1 1 1 3099.2 16665 1996 16461 25459 32953 32953 1 SNIDALLSR Unmodified 987.53491 0.53490874 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 6 0 1 53.457 53.457 2 5.4349E-06 15497 TMT1-5 162.34 84.146 152.74 303.06 221.82 132.85 253.23 276.33 145 298 228 138 257 266 1 1 1 1 1 1 30422 16666 2896 16462 25460 32954 32954 1 SNIHCNTIAPNAGSR Unmodified 1610.7583 0.75833653 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 7.5 1.5 1 1 29.209 29.209 3 6.7724E-06 5909 TMT1-5 97.45 75.395 7.3984 22.745 9.79 15.939 5.5336 35.02 7 22 11 15 7 33 1 2 2 1 1 2 3146.4 16667 1250 16463 25461;25462 32955;32956 32955 2 SNIWVAGDAACFYDIK Unmodified 1828.8454 0.8454202 373 O95831-3;O95831;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 7 0 1 72.841 72.841 3 9.6247E-10 22520 TMT1-6 116.29 101.2 46.267 88.04 84.266 97.697 59.314 121.96 44 87 87 95 65 116 1 1 1 1 1 1 17866 16668 373 16464 25463 32957 32957 1 SNLAYDIVQLPTGLTGIK Unmodified 1902.0462 0.046228496 1009 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 0 8 0 2 79.903 79.903 3 8.3102E-06 25396 TMT1-7 66.325 39.296 108.44 91.175 91.444 95.333 104.17 159.06 102 94 94 94 109 152 1 1 1 1 1 1 40493 16669 1009 16465 25464;25465 32958;32959 32959 2 SNLDEDIIAEENIVSR Unmodified 1815.885 0.88503641 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 2 0 1 65.149 65.149 2 4.8368E-06 20806 TMT1-1 80.387 76.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16670 409 16466 25466 32960 32960 1 SNLDPSNVDSLFYAAQASQALSGCEISISNETK Unmodified 3515.6362 0.63622187 479 P04844 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 0 0 0 0 0 6 0 1 83.451 83.451 4 0.0011839 27348 TMT1-5 40.685 30.715 15.775 29.309 28.904 14.271 21.316 30.306 15 29 29 15 22 29 1 1 1 1 1 1 4346.3 16671 479 16467 25467 32961 32961 1 SNLGSVVLQLK Unmodified 1156.6816 0.68157298 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 9 0 1 64.769 64.769 3 0.0002091 17585 TMT1-8 90.614 52.527 76.89 132.03 130.03 76.425 173.61 142.15 73 131 131 80 174 138 1 1 1 1 1 1 15523 16672 153 16468 25468 32962 32962 1 SNLIQQWLSQQSDLGVISK Unmodified 2143.1273 0.12733236 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 9 0 1 83.826 83.826 3 2.4449E-05 25079 TMT1-8 62.19 35.755 23.349 36.526 12.175 39.193 27.755 22.66 22 36 15 37 29 22 1 1 1 1 1 1 4360.3 16673 2056 16469 25469 32963 32963 1 SNLIWNFK Unmodified 1020.5393 0.53926584 254 O75165 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 0 0 0 0 0 9 0 1 65.664 65.664 2 0.0050883 17963 TMT1-8 99.802 62.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16674 254 16470 25470 32964 32964 1 SNLMDAISFVLGEK Unmodified 1522.7701 0.77012999 1790 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 0 9 0 1 92.433 92.433 3 0.004984 28314 TMT1-8 53.777 30.173 15.892 14.523 21.839 22.744 0 30.914 15 15 22 22 0 29 1 1 1 1 0 1 1436.7 16675 1790 16471 25471 32965 32965 1 SNLNSLDEQEGVK Unmodified 1431.6842 0.68415175 258 O75223 GGCT Gamma-glutamylcyclotransferase yes yes 0 0 0 0 0 3 0 1 46.024 46.024 3 9.4005E-05 13680 TMT1-2 92.939 53.674 108.26 138.15 82.438 64.223 101.46 66.395 102 138 87 65 102 65 1 1 1 1 1 1 9732.4 16676 258 16472 25472 32966 32966 1 SNLVDNTNQVEVLQR Unmodified 1727.8802 0.8802258 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 4 0 1 51.027 51.027 2 6.4011E-07 14697 TMT1-3 106.32 78.146 15.81 21.851 29.378 13.672 51.707 29.439 15 22 29 15 51 29 1 1 1 1 1 1 8682.6 16677 2752 16473 25473 32967 32967 1 SNNVEMDWVLK Unmodified 1333.6336 0.63363651 983 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 0 6 0 1 64.618 64.618 3 0.00062247 19914 TMT1-5 64.65 60.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16678 983 16474 25474 32968 32968 1 SNPEDQILYQTER Unmodified 1591.7478 0.74781464 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 2.5 0.5 1 1 49.448 49.448 3 3.5259E-13 14741 TMT1-1 156.24 142.16 138.57 165.07 195.75 128.3 171.17 174.2 131 167 196 131 175 168 3 3 3 3 3 3 53914 16679 1759 16475 25475;25476 32969;32970;32971 32969 3 SNPETDDYR Unmodified 1095.4469 0.4468816 2273 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 0 2 0 1 28.524 28.524 2 0.0042654 6446 TMT1-1 99.815 67.345 15.785 36.891 20.86 14.604 29.143 15.158 15 36 22 15 29 15 1 1 1 1 1 1 2200.8 16680 2273 16476 25477 32972 32972 1 SNPGDFTLSVR Unmodified 1191.5884 0.58840088 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 6 0 1 50.731 50.731 2 0.0020479 14438 TMT1-5 66.953 37.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16681 1600 16477 25478 32973 32973 1 SNPSIQATLNK Acetyl (N-term) 1213.6303 0.63026569 2045 Q6UUV7-3;Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 yes no 1 0 0 0 0 5 0 1 50.701 50.701 2 0.0044728 14249 TMT1-4 56.563 21.268 61.065 125.24 90.3 80.494 83.139 121.28 58 123 94 80 87 116 1 1 1 1 1 1 27436 16682 2045 16478 25479 32974 32974 1 SNPYYIVK Unmodified 982.51238 0.51238239 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 7 0 1 49.978 49.978 2 0.0058762 13502 TMT1-6 112.84 68.395 77.295 124.52 68.225 65.097 100.07 105.88 73 123 73 65 102 102 1 1 1 1 1 1 6381.3 16683 2944 16479 25480 32975 32975 1 SNQQLENDLNLMDIK Unmodified 1773.8567 0.85671317 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 68.321 68.321 3 7.14E-06 21207 TMT1-4 97.065 65.676 61.456 79.924 62.943 51.229 40.525 91.586 58 80 65 51 44 87 1 1 1 1 1 1 10470 16684 1139 16480 25481 32976 32976 1 SNQQLVDIIEK Unmodified 1285.6878 0.68778057 1388 P61289;P61289-3;P61289-2 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 0 5 0 1 60.057 60.057 3 0.0026572 17948 TMT1-4 76.073 41.185 61.265 110.69 69.126 65.319 85.413 75.381 58 109 73 65 87 73 1 1 1 1 1 1 8582.8 16685 1388 16481 25482 32977 32977 1 SNSVEMDWVLK Unmodified 1306.6227 0.62273747 1325 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 0 0 6 0 1 65.389 65.389 3 0.0044396 20197 TMT1-5 70.089 45.798 84.6 139.62 90.043 64.223 77.364 97.996 80 138 94 65 80 94 1 1 1 1 1 1 8727.1 16686 1325 16482 25483 32978 32978 1 SNTPILVDGK Unmodified 1042.5659 0.56587452 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 5.5 0.5 1 1 47.906 47.906 2 2.8384E-06 13241 TMT1-4 157.38 103.91 267.84 513.32 355.01 344.46 377.33 369.79 254 505 372 341 388 357 2 2 2 2 2 2 50411 16687 516 16483 25484;25485 32979;32980 32979 2 SNTSPEELGPLANQLTSDYGR Unmodified 2248.0608 0.060768941 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.6 1.85 1 1 1 1 1 63.408 63.408 3 6.712E-115 19740 TMT1-3 260.98 240.13 773.39 925.85 879.93 675.61 865.78 1024.2 730 933 896 681 891 984 9 9 9 9 9 9 583190 16688 3010 16484 25486;25487;25488;25489;25490 32981;32982;32983;32984;32985;32986;32987;32988;32989 32984 9 SNTVQIVVCEMLSQPR Unmodified 1859.9234 0.92335294 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 8 0 1 76.347 76.347 3 8.3707E-06 24018 TMT1-7 89.468 80.214 84.823 93.833 91.394 95.562 92.142 82.651 80 95 94 94 95 80 2 2 2 2 2 2 20194 16689 740 16485 25491 32990;32991 32991 2 SNTWSWGILK Unmodified 1190.6084 0.60840804 126 O15117-3;O15117-2 FYB FYN-binding protein yes no 0 0 0 0 0 9 0 2 68.372 68.372 2;3 0.00021367 19006 TMT1-8 127.92 73.512 193 239.31 181.66 168.56 167.23 235.08 182 240 189 167 175 225 3 3 3 3 3 3 32041 16690 126 16486 25492;25493 32992;32993;32994 32992 3 SNVDMDFEVENAVLGK Unmodified 1765.8193 0.81926503 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 4.25 0.433 3 1 71.566 71.566 2;3;4 1.5437E-18 22735 TMT1-3 154.07 127.95 468.42 688.46 398.92 460.32 470.54 698.66 442 683 428 451 493 668 5 5 5 5 5 5 197270 16691 393 16487 25494;25495;25496;25497 32995;32996;32997;32998;32999 32997 5 SNVDMDFEVENAVLGK Oxidation (M) 1781.8142 0.81417965 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 5 0 1 65.576 65.576 3 0.011245 20143 TMT1-4 54.288 38.165 54.132 49.658 57.2 51.705 33.447 53.412 51 51 58 51 36 51 1 1 1 1 1 1 7805.4 16692 393 16487 25498 33000 33000 39 1 SNVDMDFEVENAVLGKDFK Unmodified 2156.0096 0.0095849934 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 5 0 1 71.491 71.491 4 0.009108 22422 TMT1-4 46.209 31.281 85.246 71.264 39.492 76.552 46.947 83.94 80 73 44 73 51 80 1 1 1 1 1 1 11036 16693 393 16488 25499 33001 33001 1 SNVSDAVAQSTR Unmodified 1233.5949 0.59494282 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 4.67 1.25 1 2 2 1 34.569 34.569 2;3 2.6023E-25 8092 TMT1-3 200.67 145.6 976.59 1402.6 947.89 889.46 1077.2 1375.3 922 1395 995 884 1114 1319 5 5 5 5 5 5 533510 16694 1352 16489 25500;25501;25502;25503;25504;25505 33002;33003;33004;33005;33006;33007;33008 33004 7 SNVTAVHK Unmodified 854.46102 0.46101552 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 8 1 1 1 29.863 29.863 3 0.0069312 4831 TMT1-8 66.299 34.877 49.864 69.446 36.377 55.773 57.488 48.462 47 69 40 54 59 47 2 2 2 2 2 2 1946.2 16695 1213 16490 25506;25507 33009;33010 33010 2 SNYFEVPLPYFEYFK Unmodified 1941.9189 0.91890272 2253 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L yes yes 0 0 0 0 0 8 0 1 88.235 88.235 2 0.00096608 28453 TMT1-7 58.172 36.126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16696 2253 16491 25508 33011 33011 1 SNYICHK Unmodified 920.41744 0.41743614 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 6 0 1 31.348 31.348 3 0.0098919 6796 TMT1-5 81.296 47.044 68.589 140.96 74.888 64.418 115.05 96.921 65 138 80 65 116 94 1 1 1 1 1 1 15668 16697 251 16492 25509 33012 33012 1 SNYNFEKPFLWLAR Unmodified 1783.9046 0.90459006 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 1 9 0 1 70.231 70.231 3 6.525E-24 19730 TMT1-8 174.47 145.68 251.1 815.18 568.77 509.15 532.32 814.16 241 791 593 506 558 778 2 2 2 2 2 2 135360 16698 1445 16493 25510 33013;33014 33013 2 SNYNLPMHK Unmodified 1102.523 0.52296385 1041 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 0 7 0 1 41.393 41.393 3 0.027236 10099 TMT1-6 52.79 17.902 184.51 230.46 172.55 240.14 167.36 196.7 174 231 183 232 177 189 1 1 1 1 1 1 14223 16699 1041 16494 25511 33015 33015 1 SNYSVSLVGPAPWGFR Acetyl (N-term) 1777.8788 0.87876924 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2;Q96HC4-5 PDLIM5 PDZ and LIM domain protein 5 yes no 1 0 0 0 0 7 0 1 82.823 82.823 2 2.014E-16 26405 TMT1-6 67.153 64.654 0 15.716 14.614 15.114 21.79 15.368 0 15 15 15 22 15 0 1 1 1 1 1 9242.4 16700 2411 16495 25512 33016 33016 1 SPAGLQVLNDYLADK Unmodified 1602.8253 0.82533668 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 6.67 0.471 1 2 72.988 72.988 2;3 1.0129E-16 22554 TMT1-6 148.68 135.02 284.06 331.07 308.08 184.18 282.11 402.36 268 334 312 189 291 385 4 4 4 3 4 4 137410 16701 874 16496 25513;25514;25515 33017;33018;33019;33020 33020 4 SPAIAAVGPIK Unmodified 1022.6124 0.61243078 278 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 0 8 0 1 52.65 52.65 2 0.00089202 14672 TMT1-7 101.11 72.706 54.018 64.449 63.917 51.033 47.864 91.376 51 65 65 51 51 87 1 1 1 1 1 1 6001.5 16702 278 16497 25516 33021 33021 1 SPAIGLNNLDK Unmodified 1140.6139 0.61388734 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 6 0 1 53.474 53.474 3 2.2582E-06 15518 TMT1-5 94.767 66.484 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16703 1723 16498 25517 33022 33022 1 SPAITATLEGK Unmodified 1086.5921 0.59208927 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 6 0 1 52.136 52.136 2 1.7367E-05 14989 TMT1-5 121.36 69.925 123.06 136.53 120.11 93.485 111.59 158.85 116 138 123 94 116 152 1 1 1 1 1 1 14851 16704 2241 16499 25518 33023 33023 1 SPAQYQVVLSER Unmodified 1375.7096 0.70957864 2053 Q6XQN6;Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase yes no 0 0 0 0 0 5 0 1 49.182 49.182 2 3.1731E-10 13682 TMT1-4 132.14 94.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16705 2053 16500 25519 33024 33024 1 SPASDTYIVFGEAK Unmodified 1483.7195 0.71947463 36 Q13765;E9PAV3-2;E9PAV3 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 0 5 0 1 60.982 60.982 2 1.2784E-14 18278 TMT1-4 140.31 86.632 61.314 110.83 60.767 58.456 70.007 106.73 58 109 65 58 73 102 1 1 1 1 1 1 19592 16706 36 16501 25520 33025 33025 1 SPATAPK Unmodified 670.36499 0.36498987 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 6 0 1 29.903 29.903 2 0.044402 6193 TMT1-5 84.244 31.561 123.51 58.976 111 62.387 108.58 74.72 116 65 109 65 109 73 1 1 1 1 1 1 8783.3 16707 1616 16502 25521 33026 33026 1 SPAVKPAAAPK Unmodified 1035.6077 0.60767975 1804 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 1 8 0 1 35.186 35.186 3 0.022353 7772 TMT1-7 59.418 32.303 61.396 94.867 60.366 88.952 135.09 150.72 58 94 65 87 138 145 1 1 1 1 1 1 7520 16708 1804 16503 25522 33027 33027 1 SPDDPSR Unmodified 772.33515 0.3351463 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 2 0 1 21.684 21.684 2 0.0104 3865 TMT1-1 108.24 66.736 123.31 70.281 135.69 100.21 169.65 103.89 116 76 134 102 170 102 1 1 1 1 1 1 19410 16709 514 16504 25523 33028 33028 1 SPDELPSAGGDGGK Unmodified 1285.5786 0.57862405 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 2.67 0.471 1 2 43.067 43.067 3 2.1623E-06 12456 TMT1-2 83.087 63.764 68.9 94.332 62.089 50.152 100.5 113.33 65 94 65 51 102 109 1 1 1 1 1 1 7932.9 16710 228 16505 25524;25525;25526 33029;33030;33031 33031 3 SPDFTNENPLETR Unmodified 1518.6951 0.69505079 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 4 0 2 52.917 52.917 2;3 2.6422E-05 15451 TMT1-3 109.24 102.19 92.183 124.2 90.998 86.987 142.51 150.5 87 124 95 87 145 145 2 2 2 2 2 2 22629 16711 481 16506 25527;25528 33032;33033 33032 2 SPDFYEEVK Unmodified 1112.5026 0.50260556 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 4 0 1 53.142 53.142 2 0.0029879 15500 TMT1-3 102.62 71.318 99.751 131.4 75.31 64.27 121.58 120.19 94 131 80 65 123 116 1 1 1 1 1 1 9321.9 16712 2223 16507 25529 33034 33034 1 SPDGASEYVYHLVIESK Unmodified 1892.9156 0.91560825 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 5 0 1 67.838 67.838 3 5.4904E-11 21029 TMT1-4 116.35 82.723 68.918 71.716 78.273 81.63 60.859 98.467 65 73 80 80 65 94 1 1 1 1 1 1 10600 16713 1658 16508 25530 33035 33035 1 SPDVGLYGVIPECGETYHSDLAEAK Unmodified 2706.2483 0.24831171 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4.5 0.5 1 1 63.374 63.374 4 1.6697E-10 19554 TMT1-3 79.426 73.332 138.26 249.49 175.11 137.91 132.03 174.25 131 246 182 138 138 167 2 2 2 2 2 2 36633 16714 1139 16509 25531;25532 33036;33037 33036 2 SPEAPQPVIAMEEPAVPAPLPK Unmodified 2267.1872 0.18715543 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 5 0 1 68.456 68.456 4 0.0016558 21230 TMT1-4 48.229 33.459 54.172 49.77 50.345 35.424 49.094 76.417 51 51 51 36 51 73 1 1 1 1 1 1 10037 16715 701 16510 25533 33038 33038 1 SPEDLER Unmodified 844.39266 0.39266118 516 P06744;P06744-2;Q8N196 GPI;SIX5 Glucose-6-phosphate isomerase;Homeobox protein SIX5 yes no 0 0 0 0 0 2 0 1 34.101 34.101 2 0.007676 8673 TMT1-1 125.01 47.512 217.49 535.33 323.5 299.21 268.01 476.32 207 522 342 296 285 454 2 2 2 2 2 2 51098 16716 516 16511 25534 33039;33040 33040 2 SPEEGAETPVYLALLPPDAEGPHGQFVSEK Unmodified 3163.535 0.53497491 735 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 70.714 70.714 4 1.8163E-19 22448 TMT1-3 95.823 83.857 68.55 100.91 115.25 86.644 83.919 90.347 65 101 116 87 87 87 2 2 2 2 2 2 22663 16717 735 16512 25535;25536 33041;33042 33041 2 SPEYLSLFIDDK Unmodified 1425.7028 0.70276193 1730 Q13618;Q13618-2;Q13618-3 CUL3 Cullin-3 yes no 0 0 0 0 0 6 0 1 74.987 74.987 3 0.00015181 23968 TMT1-5 95.018 51.636 61.694 56.839 42.636 28.068 57.824 45.254 58 58 44 29 58 44 1 1 1 1 1 1 6412.2 16718 1730 16513 25537 33043 33043 1 SPFEQHIK Unmodified 984.50288 0.50288033 2294 Q92520 FAM3C Protein FAM3C yes yes 0 0 0 0 0 6 0 1 39.686 39.686 3 0.008801 10058 TMT1-5 46.891 17.082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16719 2294 16514 25538 33044 33044 1 SPFEVSVDK Unmodified 1006.4971 0.49712625 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 6 0 1 54.699 54.699 2 0.036383 15899 TMT1-5 71.451 30.673 53.97 64.318 71.965 64.863 100.63 89.871 51 65 73 65 102 87 1 1 1 1 1 1 35793 16720 270 16515 25539 33045 33045 1 SPFEVYVDK Unmodified 1082.5284 0.52842638 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 2.1 1 1 2 1 60.504 60.504 2 0.0010123 18115 TMT1-4 125.56 96.09 5596.7 7172.7 6562.3 4546.8 6753.3 7281 5286 7199 6676 4634 6895 7011 9 9 9 9 9 9 1287200 16721 831 16516 25540;25541;25542;25543;25544 33046;33047;33048;33049;33050;33051;33052;33053;33054 33048 9 SPFEVYVDKSQGDASK Unmodified 1755.8315 0.83154427 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6.33 0.471 2 1 55.908 55.908 3;4 9.9806E-24 16445 TMT1-5 176.49 170.35 1078.3 1071.1 1080.6 627.45 639.81 1394.2 1016 1092 1089 644 685 1325 3 3 3 3 3 3 170130 16722 831 16517 25545;25546;25547 33055;33056;33057 33055 3 SPFQLTAEDVYDISYLLGR Unmodified 2186.0895 0.089549874 2353 Q969X0 RILPL2 RILP-like protein 2 yes yes 0 0 0 0 0 7 0 1 94.617 94.617 3 0.00035797 30800 TMT1-6 61.276 44.783 31.773 39.809 36.395 24.486 35.635 56.547 30 40 37 25 37 54 2 2 2 2 2 2 6681.1 16723 2353 16518 25548 33058;33059 33059 2 SPFSVAVSPSLDLSK Unmodified 1532.8086 0.80862399 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7.44 2.31 1 6 2 69.751 69.751 2;3;4 6.6005E-22 21307 TMT1-7 171.32 125.67 1761.1 2258.9 2188.7 1619.5 2031.9 2568.6 1664 2269 2223 1636 2098 2464 9 9 9 9 9 9 1859200 16724 831 16519 25549;25550;25551;25552;25553;25554;25555;25556;25557 33060;33061;33062;33063;33064;33065;33066;33067;33068;33069;33070 33065 11 SPGAPGPLTLK Unmodified 1036.5917 0.59169534 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 6 2.92 1 1 2 51.514 51.514 2;3 7.4923E-07 14183 TMT1-7 146.11 101.03 1150.8 1431.1 1214.8 1178.6 1304.5 1649.2 1086 1437 1256 1167 1353 1582 5 5 5 5 5 5 594160 16725 1881 16520 25558;25559;25560;25561 33071;33072;33073;33074;33075 33075 5 SPIAEAVFR Unmodified 988.53418 0.53418046 877 P24666;P24666-3;P24666-2;P24666-4 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 6 0 1 53.974 53.974 2 0.0045747 15757 TMT1-5 99.136 60.299 147.65 224.33 242.53 163.24 256.9 250.64 140 224 244 167 261 242 1 1 1 1 1 1 68174 16726 877 16521 25562 33076 33076 1 SPILVATAVAAR Unmodified 1167.6976 0.69755739 82 O00571-2;O00571;O15523-2;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 9 0 1 56.945 56.945 2 0.0017594 14508 TMT1-8 87.184 66.347 92.015 131.29 113.32 86.36 105.1 144.11 87 131 116 87 109 138 1 1 1 1 1 1 16040 16727 82 16522 25563 33077 33077 1 SPITGNDLSPPVSFNLMFK Unmodified 2063.0398 0.03976291 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 81.14 81.14 3 6.0127E-10 23987 TMT1-8 85.937 63.927 30.737 35.67 33.567 69.351 41.818 29.721 29 36 36 66 44 29 1 1 1 1 1 1 8861.1 16728 1084 16523 25564 33078 33078 1 SPKDNVDDPTGNFR Unmodified 1560.7168 0.71684887 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 1 5 0 1 41.129 41.129 3 0.0006776 10483 TMT1-4 77.431 58.037 45.747 156.75 113.43 54.915 91.388 128.51 44 152 116 58 94 123 1 1 1 1 1 1 8497 16729 1656 16524 25565 33079 33079 1 SPKPAAPAAPPFSSSSGVLGTGLCELDR Unmodified 2768.3803 0.38032894 165 O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 1 8 0 1 63.224 63.224 4 2.4497E-08 18810 TMT1-7 74.381 74.274 54.073 73.238 47.137 75.825 61.382 90.99 51 73 51 73 65 87 1 1 1 1 1 1 12428 16730 165 16525 25566 33080 33080 1 SPLAQMEEER Unmodified 1188.5445 0.54448715 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 2 0 1 45.81 45.81 2 0.0087999 13273 TMT1-1 86.014 66.237 46.628 57.745 49.208 51.054 93.398 75.153 44 58 51 51 94 73 1 1 1 1 1 1 6458.6 16731 1883 16526 25567 33081 33081 1 SPLAQMEEERR Unmodified 1344.6456 0.64559818 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 1 3.5 0.5 1 1 38.149 38.149 3 8.0449E-07 10610 TMT1-2 130.69 127.49 246.37 331.12 330.16 300.01 262.43 363.48 233 332 337 297 276 348 2 2 2 2 2 2 57243 16732 1883 16527 25568;25569 33082;33083 33082 2 SPLGEVAIR Unmodified 940.53418 0.53418046 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 6 0 1 48.356 48.356 2 0.0024271 13498 TMT1-5 76.1 34.208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16733 252 16528 25570 33084 33084 1 SPLIIFSDCDMNNAVK Unmodified 1822.8594 0.8593557 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 7 0 1 72.077 72.077 3 2.8279E-08 22229 TMT1-6 86.641 68.503 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16734 1171 16529 25571 33085 33085 1 SPLLFTLAENCIDQVMK Unmodified 1977.9904 0.99036988 2030 Q6P3X3 TTC27 Tetratricopeptide repeat protein 27 yes yes 0 0 0 0 0 8 0 1 90.568 90.568 3 0.0083328 29245 TMT1-7 35.492 20.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16735 2030 16530 25572 33086 33086 1 SPLQSQPHSR Unmodified 1135.5734 0.57341951 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 0 6 0 1 24.163 24.163 3 0.031474 4118 TMT1-5 50.207 29.878 19.178 14.489 10.636 6.7323 15.139 7.03 18 15 11 7 15 7 1 1 1 1 1 1 2025.7 16736 2872 16531 25573 33087 33087 1 SPLSWIEEK Unmodified 1087.555 0.55497548 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 6.5 0.5 1 1 67.872 67.872 2 9.7933E-05 21173 TMT1-5 118.18 85.857 53.705 103.51 83.386 95.768 106.53 89.702 51 102 87 94 109 87 1 1 1 1 1 1 9030.2 16737 1279 16532 25574;25575 33088;33089 33088 2 SPLTAASPGELPTEGAGPDVVEDISHLLADVAR Unmodified 3283.6572 0.65721531 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 93.644 93.644 4 8.2425E-05 31023 TMT1-4 49.626 44.082 0 15.709 14.999 6.4825 14.601 23.035 0 15 15 7 15 22 0 1 1 1 1 1 6867.4 16738 2309 16533 25576 33090 33090 1 SPNELVDDLFK Unmodified 1275.6347 0.63468237 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 5 0 1 73.622 73.622 2 0.00016659 23265 TMT1-4 85.845 30.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16739 2934 16534 25577 33091 33091 1 SPPFFENLTLDLQPPK Unmodified 1841.9564 0.95635086 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 8 0 1 80.685 80.685 4 0.015493 25565 TMT1-7 45.864 19.135 38.322 27.806 27.86 37.173 27.335 37.596 36 29 29 36 29 36 1 1 1 1 1 1 2904.9 16740 832 16535 25578 33092 33092 1 SPPGQVTEAVK Unmodified 1111.5873 0.58733824 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 0 5 0 1 41.033 41.033 2 0.011448 10434 TMT1-4 77.541 55.304 99.938 123.28 50.856 89.78 121.21 96.745 94 123 58 87 123 94 1 1 1 1 1 1 20168 16741 716 16536 25579 33093 33093 1 SPPIPLAK Unmodified 821.50109 0.50108942 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 8 0 1 51.314 51.314 2 0.0094927 14098 TMT1-7 100.45 74.714 207.87 291.84 161.81 177.39 167.28 191.37 196 290 174 174 174 184 1 1 1 1 1 1 32237 16742 686 16537 25580 33094 33094 1 SPPYTAFLGNLPYDVTEESIKEFFR Unmodified 2919.4331 0.43307602 866 P23588-2;P23588 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 1 8 0 1 92.894 92.894 4 4.929E-05 30071 TMT1-7 56.131 36.409 25.428 30.796 28.33 24.061 25.661 42.974 24 31 29 24 27 41 1 1 1 1 1 1 4055.7 16743 866 16538 25581 33095 33095 1 SPSAQLMEQVAQLK Unmodified 1528.7919 0.79192807 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 67.66 67.66 3 0.015678 20463 TMT1-6 51.004 29.945 69.005 71.959 63.409 50.63 70.917 90.718 65 73 65 51 73 87 1 1 1 1 1 1 10989 16744 1762 16539 25582 33096 33096 1 SPSDSSTASTPVAEQIER Unmodified 1860.8701 0.87011462 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 2 0 1 42.632 42.632 3 1.2687E-10 11999 TMT1-1 113.33 109.49 68.886 86.738 70.863 57.72 77.114 113.99 65 87 73 58 80 109 1 1 1 1 1 1 28186 16745 1897 16540 25583 33097 33097 1 SPTDWALFTYEGNSNDIR Unmodified 2084.9439 0.94394827 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 0 6 0 1 71.319 71.319 3 1.4626E-19 22597 TMT1-5 137.81 119.9 92.345 100.9 83.637 113.57 89.204 113.65 87 102 88 110 94 109 2 2 2 2 2 2 50256 16746 2887 16541 25584 33098;33099 33099 2 SPTLGASNR Unmodified 901.46174 0.4617438 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 5.5 0.5 1 1 28.975 28.975 2 0.014573 5779 TMT1-5 82.645 59.121 108.53 68.761 95.291 63.452 101.75 58.924 102 73 95 65 102 58 2 2 2 2 2 2 15430 16747 489 16542 25585;25586 33100;33101 33101 2 SPVAVQSTK Unmodified 915.50255 0.50254598 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 37.436 37.436 2 0.0020738 9088 TMT1-5 106.88 56.248 238.97 258.34 194.46 190.42 242.68 202.01 225 261 203 189 247 196 2 2 2 2 2 2 27667 16748 1663 16543 25587;25588 33102;33103 33102 2 SPVDIVTGGISPVR Unmodified 1395.7722 0.7721789 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 7 0 1 62.987 62.987 2 1.627E-16 18653 TMT1-6 134.75 82.154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16749 1229 16544 25589 33104 33104 1 SPVEVAQDVLAAVGK Unmodified 1481.809 0.80895834 2012 Q6IAN0 DHRS7B Dehydrogenase/reductase SDR family member 7B yes yes 0 0 0 0 0 7 0 1 86.568 86.568 3 1.1924E-05 27785 TMT1-6 92.063 73.253 23.171 44.665 35.215 21.119 44.035 29.657 22 44 36 22 44 29 1 1 1 1 1 1 5631.1 16750 2012 16545 25590 33105 33105 1 SPVTFLSDLR Unmodified 1133.6081 0.60807369 10 A5YKK6-2;A5YKK6 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 0 7 0 1 66.92 66.92 2 0.027481 20170 TMT1-6 72.042 42.732 38.041 58.325 49.166 52.184 33.425 53.412 36 58 51 51 36 51 1 1 1 1 1 1 5153.8 16751 10 16546 25591 33106 33106 1 SPVTLTAYIVTSLLGYR Unmodified 1853.0299 0.02985015 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-2 CD109 CD109 antigen yes no 0 0 0 0 0 9 0 1 105.6 105.6 3 0.016802 32988 TMT1-8 42.382 24.638 0 15.96 0 7.651 0 0 0 15 0 7 0 0 0 1 0 1 0 0 2822.1 16752 2056 16547 25592 33107 33107 1 SPVTTLLECMHK Unmodified 1414.6949 0.69485656 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 8 0 1 62.57 62.57 3 0.00091635 18558 TMT1-7 59.116 35.881 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16753 1319 16548 25593 33108 33108 1 SPWSNKYDPPLEDGAMPSAR Unmodified 2217.0161 0.016067355 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 6 0 1 55.43 55.43 3 0.010236 16263 TMT1-5 46.35 32.478 76.982 154.95 95.036 126.68 111.12 127.95 73 152 102 123 116 123 1 1 1 1 1 1 31951 16754 1144;1145 16549 25594 33109 33109 1 SPYLYPLYGLGELPQGFAR Unmodified 2140.0993 0.099326699 1217;972 P50395;P50395-2;P60028;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 0 8.67 0.471 1 2 82.754 82.754 2;3 2.1525E-24 26443 TMT1-7 141.36 131.61 223.7 237.11 253.28 187.52 210.58 257.29 211 241 256 189 218 247 5 5 5 5 5 5 230060 16755 1217;972 16550 25595;25596;25597 33110;33111;33112;33113;33114 33110 5 SPYQEFTDHLVK Unmodified 1462.7092 0.70924429 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 5.5 0.5 1 1 55.238 55.238 3 9.5773E-06 16144 TMT1-5 110.38 79.941 415.09 558.1 456.2 352.03 525.48 492.42 392 558 469 356 534 476 3 3 3 3 3 3 80805 16756 727 16551 25598;25599 33115;33116;33117 33116 3 SPYTVTVGQACNPSACR Unmodified 1866.8353 0.83526622 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.58 1 1 1 1 1 1 44.672 44.672 3 1.3195E-35 11921 TMT1-5 184.8 157.45 527.31 715.56 577.13 521.49 663.28 730.47 498 715 597 520 681 703 7 7 7 7 7 7 422030 16757 831 16552 25600;25601;25602;25603;25604;25605 33118;33119;33120;33121;33122;33123;33124;33125 33120 8 SQAADQITK Unmodified 960.48762 0.4876242 2419 Q96I99;Q96I99-2 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 0 0 0 0 0 4 0 1 35.553 35.553 2 0.00034368 8558 TMT1-3 103.22 71.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16758 2419 16553 25606 33126 33126 1 SQAALQK Unmodified 744.413 0.41300269 1998 Q5XKP0 QIL1 Protein QIL1 yes yes 0 0 0 0 0 6 0 1 33.587 33.587 2 0.021437 7630 TMT1-5 96.492 65.823 92.159 100.39 115.19 86.056 115.37 58.536 87 102 116 87 116 58 1 1 1 1 1 1 8394.2 16759 1998 16554 25607 33127 33127 1 SQACGGNLGSIEELR Unmodified 1589.7468 0.74676879 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 4 0 1 48.908 48.908 3 3.1334E-08 13852 TMT1-3 114.29 86.628 53.928 64.2 79.151 73.743 70.66 67.274 51 65 80 73 73 65 1 1 1 1 1 1 15868 16760 3054 16555 25608 33128 33128 1 SQAEFEKAAEEVR Acetyl (N-term) 1534.7264 0.72635092 526 P07108;P07108-6 DBI Acyl-CoA-binding protein yes no 1 0 0 0 1 2 0 1 53.586 53.586 3 0.0081289 16327 TMT1-1 46.964 28.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16761 526 16556 25609 33129 33129 1 SQAEQLLK Unmodified 915.50255 0.50254598 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 45.111 45.111 2 0.0051305 12070 TMT1-4 120.12 35.376 280.63 350.12 328.14 267.4 200.82 373.77 265 352 335 266 216 356 1 1 1 1 1 1 36855 16762 1601 16557 25610 33130 33130 1 SQAIHQLK Unmodified 923.51886 0.51886475 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 8 1 1 1 33.331 33.331 3 0.0075621 6920 TMT1-6 77.677 53.705 129.93 204.36 171.72 105.73 168.75 244.63 123 203 175 109 174 234 1 1 1 1 1 1 11129 16763 1820 16558 25611;25612 33131;33132 33131 2 SQAPGQPGASQWGSR Unmodified 1512.707 0.70695288 2397 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 0 6 0 1 35.861 35.861 3 0.0085384 8542 TMT1-5 37.431 17.421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16764 2397 16559 25613 33133 33133 1 SQAPLESSLDSLGDVFLDSGR Unmodified 2192.0597 0.059706308 1805 Q14980-2;Q14980;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 82.596 82.596 3 0.00016895 26773 TMT1-4 61.524 51.603 15.95 22.241 5.4615 15.66 21.765 15.369 15 22 7 15 22 15 1 1 1 1 1 1 3255.3 16765 1805 16560 25614 33134 33134 1 SQAYADYIGFILTLNEGVK Unmodified 2101.0732 0.073171528 1838 Q15257-2;Q15257;Q15257-4 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 8 0 1 90.513 90.513 3 2.8295E-13 29201 TMT1-7 109.28 90.249 11.514 17.816 33.462 25.072 13.746 23.06 11 18 33 25 15 22 1 1 1 1 1 1 6553.7 16766 1838 16561 25615 33135 33135 1 SQDAEVGDGTTSVTLLAAEFLK Unmodified 2251.122 0.12197221 2496 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 5.67 0.471 1 2 86.18 86.18 3;4 8.7997E-23 28161 TMT1-4 120.41 99.017 215.65 221.92 176 146.47 197.53 235.28 203 225 182 147 203 226 6 6 6 6 6 6 41210 16767 2496 16562 25616;25617;25618 33136;33137;33138;33139;33140;33141 33137 6 SQDEAPGDPIQQLNLK Unmodified 1751.869 0.86899241 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 3.6 1.36 1 3 1 59.775 59.775 2;3;4 2.0203E-35 18077 TMT1-3 200.98 166.09 1726.9 2059.2 1603.1 1533.6 1946.9 1961.3 1628 2070 1667 1524 1993 1892 6 6 6 6 6 6 746080 16768 2112 16563 25619;25620;25621;25622;25623 33142;33143;33144;33145;33146;33147 33145 6 SQDILLSVENTVIYR Unmodified 1748.9309 0.93086439 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 5 0 1 75.181 75.181 3 1.8614E-08 23852 TMT1-4 115.38 103.02 99.951 108.21 61.469 66.155 123.34 96.684 94 109 66 66 124 94 2 2 2 2 2 2 22766 16769 529 16564 25624 33148;33149 33148 2 SQDVELWEGEVVK Unmodified 1516.7409 0.74093835 2861 Q9UHB6-3;Q9UHB6-2;Q9UHB6-5;Q9UHB6;Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 0 3 0 1 63.418 63.418 3 0.0012415 20541 TMT1-2 55.841 34.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16770 2861 16565 25625 33150 33150 1 SQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLR Unmodified 3338.6478 0.64777283 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 4 0 2 60.847 60.847 3;4 1.7174E-15 18517 TMT1-3 83.874 77.298 53.563 71.818 134.11 68.539 115.08 90.524 51 73 131 72 116 88 2 2 2 2 2 2 114830 16771 2849 16566 25626;25627 33151;33152 33151 2 SQEEVVSLLR Unmodified 1158.6245 0.62445203 2260 Q8TEW0-9;Q8TEW0-10;Q8TEW0-8;Q8TEW0-5;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0 PARD3 Partitioning defective 3 homolog yes no 0 0 0 0 0 4 0 1 55.138 55.138 2 0.00041537 16299 TMT1-3 86.879 38.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16772 2260 16567 25628 33153 33153 1 SQEGENEEGSEGELVVK Unmodified 1818.8119 0.81193104 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 2 0 1 46.298 46.298 3 4.3436E-10 13431 TMT1-1 112.06 107.88 61.568 56.491 64.003 58.966 32.6 68.36 58 58 65 58 36 65 1 1 1 1 1 1 10652 16773 2320 16568 25629 33154 33154 1 SQEGRPVQVIGALIGK Unmodified 1650.9417 0.94170385 2081 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 1 8 0 1 60.741 60.741 3 3.5469E-05 17820 TMT1-7 85.473 75.552 92.189 115.58 97.332 126.43 117.4 158.68 87 116 102 123 123 152 1 1 1 1 1 1 11965 16774 2081 16569 25630 33155 33155 1 SQEGSQFVK Unmodified 1008.4876 0.4876242 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 5 0 1 38.586 38.586 2 0.00026378 9496 TMT1-4 142.98 88.37 108.28 83.174 125.15 53.91 107.65 113.12 102 87 123 58 109 109 1 1 1 1 1 1 8957.2 16775 1439 16570 25631 33156 33156 1 SQELEVK Unmodified 831.4338 0.43379771 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 40.154 40.154 2 0.025212 10298 TMT1-3 93.551 25.794 146.05 237.88 138.14 84.048 149.42 166.3 138 235 145 87 152 160 1 1 1 1 1 1 26074 16776 1763 16571 25632 33157 33157 1 SQEPLPDDDEEFELPEFVEPFLK Unmodified 2748.2694 0.26942431 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 4 0 1 91.98 91.98 4 0.0024979 30444 TMT1-3 42.454 34.921 9.5684 9.8858 6.52 9.2636 9.8244 6.1157 9 10 7 9 10 6 1 1 1 1 1 1 1327.4 16777 2028 16572 25633 33158 33158 1 SQEQEVLER Unmodified 1116.5411 0.54111633 2897 Q9UKV3-5;Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 2 0 1 34.396 34.396 2 0.03043 8739 TMT1-1 73.841 50.318 46.578 50.051 64.164 65.733 79.127 44.646 44 51 65 65 80 44 1 1 1 1 1 1 5764.2 16778 2897 16573 25634 33159 33159 1 SQEQLAAELAEYTAK Unmodified 1650.8101 0.81008055 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 5 0 2 67.483 67.483 2;3 5.0605E-10 20801 TMT1-4 122.78 96.844 146.13 234.86 127.93 147.29 189.94 241.89 138 232 138 145 196 232 2 2 2 2 2 2 72745 16779 720 16574 25635;25636 33160;33161 33160 2 SQESGYYDR Unmodified 1103.452 0.45196697 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 2 0 1 29.014 29.014 2 0.015209 6602 TMT1-1 81.771 59.685 30.846 20.861 27.925 45.927 26.64 46.144 29 22 29 44 29 44 1 1 1 1 1 1 4097.2 16780 1109 16576 25637 33162 33162 1 SQETECTYFSTPLLLGK Unmodified 1972.9452 0.94519382 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 71.366 71.366 3 4.1288E-10 22525 TMT1-5 112.3 91.206 207.22 377.43 199.79 278.29 203.23 319.33 196 371 218 269 217 305 3 3 3 3 3 3 83205 16781 1075 16577 25638;25639 33163;33164;33165 33163 3 SQFEAQK Unmodified 836.40283 0.40283194 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 5 0 1 35.879 35.879 2 0.0081957 8403 TMT1-4 118.74 65.392 160.71 188.36 240.63 155.74 254.93 196.33 152 191 240 160 257 191 1 1 1 1 1 1 19502 16782 307 16578 25640 33166 33166 1 SQFEELCAELLQK Unmodified 1593.7709 0.77085827 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 5.5 0.5 1 1 73.979 73.979 3 0.00026241 23553 TMT1-5 85.909 55.851 77.239 116.81 84.249 80.121 122.15 112.71 73 116 88 80 124 109 2 2 2 2 2 2 12138 16783 2303 16579 25641;25642 33167;33168 33168 2 SQFTITPGSEQIR Unmodified 1462.7416 0.74160705 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 6 0 1 49.294 49.294 2 1.1005E-12 13873 TMT1-5 160.62 90.255 37.687 96.194 76.625 89.199 70.463 52.355 36 94 80 87 73 51 1 1 1 1 1 1 16704 16784 2492 16580 25643 33169 33169 1 SQGAALDK Unmodified 788.40283 0.40283194 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 4.5 0.5 1 1 34.034 34.034 2 0.0039398 7649 TMT1-4 128.6 38.232 506.72 379.29 535.36 360.02 605.47 376.08 477 397 533 369 607 369 2 2 2 2 2 2 60462 16785 1074 16581 25644;25645 33170;33171 33171 2 SQGDASK Unmodified 691.31368 0.31368258 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2 0 1 23.042 23.042 2 0.0058339 4299 TMT1-1 80.455 18.347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16786 831 16582 25646 33172 33172 1 SQGGDGFYGR Unmodified 1042.4468 0.44682202 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 3 0 1 33.67 33.67 2 0.047604 8839 TMT1-2 64.906 18.459 145.52 232.07 233.38 164.09 240.79 261.76 138 231 236 167 246 252 1 1 1 1 1 1 24675 16787 251 16583 25647 33173 33173 1 SQGPSLDLSALK Unmodified 1214.6507 0.65066678 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 7 0 1 61.595 61.595 2 5.5805E-12 18106 TMT1-6 138.89 65.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16788 356 16584 25648 33174 33174 1 SQHKEELGAVR Unmodified 1252.6524 0.65239812 1943 Q4V328-4;Q4V328;Q4V328-2;Q4V328-3 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 1 5 0 1 27.759 27.759 4 0.0010133 5232 TMT1-4 88.24 74.157 68.697 109.96 82.896 96.404 74.272 144.99 65 109 87 94 80 138 1 1 1 1 1 1 5371.8 16789 1943 16585 25649 33175 33175 1 SQHLDNFSNQIGK Unmodified 1486.7165 0.71645494 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 8 0 1 42.552 42.552 3 1.5922E-11 10647 TMT1-7 143.94 133.35 146.72 216.18 224.19 173.17 193.92 365.43 139 216 227 174 205 348 1 1 1 1 1 1 10833 16790 666 16586 25650 33176 33176 1 SQHSSSSSHWHQEGVDVK Unmodified 2020.8987 0.89872941 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 6 0 1 28.827 28.827 5 0.017342 5800 TMT1-5 38.888 25.85 38.198 43.652 35.199 21.135 43.228 53.132 36 44 36 22 44 51 1 1 1 1 1 1 2251.2 16791 2791 16587 25651 33177 33177 1 SQIEFALCR Unmodified 1122.5492 0.5491786 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 6 0 1 53.126 53.126 2 0.009304 15398 TMT1-5 89.886 38.826 139.19 145.21 108.42 172.44 193.01 179.98 131 147 116 167 198 174 1 1 1 1 1 1 17891 16792 2791 16588 25652 33178 33178 1 SQIFSTASDNQPTVTIK Unmodified 1835.9265 0.92650729 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7 0 2 58.043 58.043 3 7.0183E-14 16674 TMT1-6 122.31 105.43 401.15 593.62 424.16 369.14 531.23 484.8 379 590 442 370 540 469 1 1 1 1 1 1 152270 16793 640 16589 25653;25654 33179;33180 33179 2 SQIHDIVLVGGSTR Unmodified 1480.7998 0.79979063 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 45.366 45.366 2;3 2.974E-15 11627 TMT1-7 139.94 99.551 748.98 873.25 879.26 691.37 901.54 966.72 707 882 893 696 924 931 6 6 6 6 6 6 429440 16794 641 16590 25655;25656;25657;25658;25659 33181;33182;33183;33184;33185;33186 33185 6 SQIPLSK Unmodified 771.44905 0.44905385 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 7 0 1 43.992 43.992 2 0.010052 11112 TMT1-6 109.71 36.454 233.82 496.03 317.43 292.2 369.23 431.85 222 486 334 291 380 415 1 1 1 1 1 1 50331 16795 676 16591 25660 33187 33187 1 SQLAAAAR Unmodified 786.4348 0.43480077 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6 2.58 1 1 1 1 1 1 29.119 29.119 2 0.00026994 6244 TMT 1-phospho 153.04 62.259 1388 1715.7 1686.7 1324.7 1627.4 1827.6 1311 1727 1715 1332 1674 1758 8 8 8 8 8 8 413830 16796 3010 16592 25661;25662;25663;25664;25665;25666 33188;33189;33190;33191;33192;33193;33194;33195 33188 8 SQLDIIIHSLK Unmodified 1265.7343 0.73433683 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 8 0 1 66.195 66.195 3 0.00074262 19933 TMT1-7 89.382 52.797 122.68 159.21 165.22 119.08 293.09 169.66 116 160 167 123 291 167 1 1 1 1 1 1 29149 16797 676 16593 25667 33196 33196 1 SQLDIIIHSLKK Unmodified 1393.8293 0.82929985 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 1 9 0 1 62.51 62.51 4 0.00018609 16728 TMT1-8 88.163 55.665 160.85 249.17 167.14 120.42 215.76 257.15 152 247 174 123 220 247 1 1 1 1 1 1 11719 16798 676 16594 25668 33197 33197 1 SQLDINNK Unmodified 930.47706 0.47705951 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 5 0 1 41.24 41.24 2 0.013883 10562 TMT1-4 94.692 45.274 54.018 73.084 56.55 34.772 64.076 67.462 51 73 58 36 65 65 1 1 1 1 1 1 5829.9 16799 68 16595 25669 33198 33198 1 SQLDINNKK Unmodified 1058.572 0.57202253 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 7 0 1 38.865 38.865 3 0.0047671 9100 TMT1-6 81.771 42.505 307.88 313.85 287.41 304.41 279.94 396.03 290 319 297 299 294 379 2 2 2 2 2 2 27840 16800 68 16596 25670 33199;33200 33199 2 SQLEEKENK Unmodified 1103.5459 0.54586736 460 P04080 CSTB Cystatin-B yes yes 0 0 0 0 1 4 0 1 34.067 34.067 3 0.0016264 7959 TMT1-3 98.898 10.457 343.38 397.13 381.78 182.85 400.64 303.04 324 401 384 195 401 295 1 1 1 1 1 1 23436 16801 460 16597 25671 33201 33201 1 SQLEESISQLR Unmodified 1288.6623 0.6622941 2545 Q9BUR5-2;Q9BUR5 APOO Apolipoprotein O yes no 0 0 0 0 0 4 0 1 53.198 53.198 3 0.0040885 15534 TMT1-3 71.268 38.701 53.995 88.13 47.654 44.188 56.57 60.214 51 87 51 44 58 58 1 1 1 1 1 1 7358.3 16802 2545 16598 25672 33202 33202 1 SQLETSLK Unmodified 904.48656 0.48656157 176 O43488;Q8NHP1;Q8NHP1-3 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 0 0 0 0 0 6 0 1 43.652 43.652 2 0.0014815 11634 TMT1-5 87.806 25.606 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16803 176 16599 25673 33203 33203 1 SQLETSLKR Unmodified 1060.5877 0.58767259 176 O43488;Q8NHP1;Q8NHP1-3 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 0 0 0 0 1 7 0 1 37.264 37.264 3 0.00033392 8490 TMT1-6 80.916 45.252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16804 176 16600 25674 33204 33204 1 SQLIDELADKFNR Unmodified 1547.7944 0.79437091 2175 Q8N3U4;Q8N3U4-2 STAG2 Cohesin subunit SA-2 yes no 0 0 0 0 1 7 0 1 69.204 69.204 3 0.0019616 21107 TMT1-6 75.316 45.988 37.926 74.193 55.147 66.586 62.32 76.04 36 73 58 65 65 73 1 1 1 1 1 1 8304.7 16805 2175 16601 25675 33205 33205 1 SQLLGSAHEVQR Unmodified 1323.6895 0.6895119 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 5.5 0.5 1 1 34.435 34.435 3 0.00080261 7820 TMT1-4 78.985 69.878 222.59 422.89 282.86 269.39 354.98 268.1 211 416 297 268 360 261 2 2 2 2 2 2 14525 16806 1737 16602 25676;25677 33206;33207 33206 2 SQLNSQSVEITK Unmodified 1332.6885 0.68850885 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 5 0 1 45.767 45.767 3 0.00018077 12345 TMT1-4 92.99 61.763 138.75 165.59 163.9 138.31 146.45 180.24 131 167 167 138 152 173 1 1 1 1 1 1 13108 16807 237 16603 25678 33208 33208 1 SQLSCVVVDDIER Unmodified 1518.7348 0.73480712 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 3 0 1 58.483 58.483 3 2.2356E-05 18562 TMT1-2 102.5 81.497 23.326 21.35 29.022 21.493 43.762 37.127 22 22 29 22 44 36 1 1 1 1 1 1 10049 16808 1129 16604 25679 33209 33209 1 SQMAAVEPER Unmodified 1116.5234 0.52335778 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 3 0 1 34.942 34.942 2 0.00015195 9306 TMT1-2 93.345 64.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16809 2344 16605 25680 33210 33210 1 SQNIVTDSSSLSAEAIR Unmodified 1776.8854 0.88537076 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 52.808 52.808 3 2.3109E-24 15360 TMT1-3 143.46 105.08 46.582 57.616 57.121 43.618 56.853 52.744 44 58 58 44 58 51 1 1 1 1 1 1 33034 16810 1546 16606 25681 33211 33211 1 SQNKEDYAGLK Unmodified 1251.6095 0.60953025 1506 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 1 6 0 1 39.486 39.486 3 0.0078958 9971 TMT1-5 70.195 45.813 137.68 218.72 299.64 201.61 244.38 320.29 131 219 298 205 253 307 1 1 1 1 1 1 21940 16811 1506 16607 25682 33212 33212 1 SQNVMAAASIANIVK Unmodified 1515.8079 0.80791248 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 8.5 0.5 1 1 64.688 64.688 2;3 8.869E-34 19409 TMT1-7 160.84 117.07 53.888 72.724 78.631 73.951 61.212 98.457 51 73 80 73 65 94 1 1 1 1 1 1 17574 16812 770 16608 25683;25684 33213;33214 33213 2 SQPAILLLTAAR Unmodified 1252.7503 0.75032125 1963 Q5JTV8;Q5JTV8-3 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 0 9 0 1 64.689 64.689 2 4.0467E-05 17525 TMT1-8 105.36 60.047 53.777 95.08 78.356 50.024 55.752 76.227 51 94 80 51 58 73 1 1 1 1 1 1 13829 16813 1963 16609 25685 33215 33215 1 SQPAPAEFR Unmodified 1001.493 0.49304393 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 0 4 0 1 34.933 34.933 2 0.0099275 8344 TMT1-3 89.029 23.991 77.231 109.23 91.941 63.396 115.35 89.45 73 109 94 65 116 87 1 1 1 1 1 1 12040 16814 883 16610 25686 33216 33216 1 SQPDLPISK Unmodified 983.52876 0.52876073 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 5.33 0.471 2 1 47.94 47.94 2;3 0.0012892 13221 TMT1-5 121.6 68.049 860.11 1215.3 847.22 864.48 1097.2 1221.2 812 1210 890 856 1127 1175 5 5 5 5 5 5 78796 16815 1000 16611 25687;25688;25689 33217;33218;33219;33220;33221 33220 5 SQQALVQK Unmodified 900.50288 0.50288033 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 6 0 1 37.049 37.049 2 5.3569E-05 8983 TMT1-5 160.11 68.206 130.1 181.1 161.94 162.37 152.14 225.91 123 181 167 160 160 216 1 1 1 1 1 1 40983 16816 875 16612 25690 33222 33222 1 SQQELEAK Unmodified 931.46108 0.4610751 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 3 0 1 35.34 35.34 2 0.0070156 9455 TMT1-2 103.7 47.442 38.074 50.861 49.995 43.625 79.081 75.561 36 51 51 44 80 73 1 1 1 1 1 1 5831.2 16817 1744 16613 25691 33223 33223 1 SQQQQLVESLHK Unmodified 1423.7419 0.74194141 2088 Q7Z3B4;Q7Z3B4-3;Q7Z3B4-2 NUP54 Nucleoporin p54 yes no 0 0 0 0 0 9 0 1 33.389 33.389 4 0.046569 5973 TMT1-8 32.062 3.7354 46.704 46.085 46.256 35.859 38.913 37.266 44 47 47 36 40 36 1 1 1 1 1 1 5474.5 16818 2088 16614 25692 33224 33224 1 SQQSEVTR Unmodified 933.45157 0.45157304 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 0 2 0.816 1 1 1 20.088 20.088 2 0.0041893 3529 TMT1-1 126.82 49.753 303.06 217.51 277.71 166.68 311.5 209.64 285 228 277 173 312 205 6 6 6 6 6 6 62181 16819 2626 16615 25693;25694;25695 33225;33226;33227;33228;33229;33230 33227 6 SQQYEQAADAELAWVAETK Unmodified 2136.9964 0.99637777 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 4 0 1 72.022 72.022 3 1.5855E-06 22913 TMT1-3 79.293 53.973 39.33 51.298 18.805 38.67 34.596 37.389 37 51 22 37 36 36 1 1 1 1 1 1 5460 16820 2935 16616 25696 33231 33231 1 SQSAAVTPSSTTSSTR Unmodified 1566.7485 0.74854293 1884 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 0 0 0 4 0 1 28.095 28.095 3 0.002779 5630 TMT1-3 59.252 47.334 15.645 36.501 44.758 13.05 36.03 29.886 15 36 44 15 36 29 1 1 1 1 1 1 1727.5 16821 1884 16617 25697 33232 33232 1 SQTTGFPSLITIFSAPNYLDVYNNK Unmodified 2789.3912 0.3912112 1618;741 P16298-2;P16298-3;P16298;P16298-4;Q08209-3;Q08209-2;Q08209;Q08209-5 PPP3CB;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform no no 0 0 0 0 0 9 0 1 92.262 92.262 4 0.002172 28222 TMT1-8 44.167 28.224 15.742 36.773 28.113 21.976 20.961 30.316 15 36 29 22 22 29 1 1 1 1 1 1 5365.7 16822 741;1618 16618 25698 33233 33233 1 SQVDEEFLK Unmodified 1093.5292 0.52915466 1331 P56181-2 yes yes 0 0 0 0 0 3 0 1 52.884 52.884 2 0.03128 16417 TMT1-2 73.499 18.436 46.736 42.937 43.535 28.305 42.386 68.081 44 44 44 29 44 65 1 1 1 1 1 1 4262 16823 1331 16619 25699 33234 33234 1 SQVDPTSANFLIWPPCVEVK Unmodified 2286.1355 0.13545421 462 P04085-2;P04085 PDGFA Platelet-derived growth factor subunit A yes no 0 0 0 0 0 8 0 1 81.118 81.118 3 0.0063756 25794 TMT1-7 45.363 36.267 7.0921 60.92 18.775 30.048 28.176 22.648 7 58 22 29 29 22 1 1 1 1 1 1 3045.7 16824 462 16620 25700 33235 33235 1 SQVEEELFSVR Unmodified 1321.6514 0.65139506 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 3.5 0.5 1 1 59.36 59.36 2 9.8045E-05 18964 TMT1-2 113.38 79.301 169.91 172.2 152.29 216.38 216.32 264.59 160 175 160 210 225 254 3 3 3 3 3 3 35536 16825 1833 16621 25701;25702 33236;33237;33238 33236 3 SQVEPADYKADEDPALFQSVK Unmodified 2336.1172 0.11722119 1166 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 1 5 0 1 58.014 58.014 4 1.3473E-05 17154 TMT1-4 71.535 33.117 115.47 144.37 126.97 124.1 147.32 173.82 109 145 131 123 152 167 1 1 1 1 1 1 13984 16826 1166 16622 25703 33239 33239 1 SQVFNILR Unmodified 975.55016 0.55016488 2798 Q9NZK5 CECR1 Adenosine deaminase CECR1 yes yes 0 0 0 0 0 9 0 1 57.219 57.219 2 0.035293 14582 TMT1-8 69.716 30.909 91.667 169.17 139.69 147.79 125.86 127.53 87 167 145 145 131 123 1 1 1 1 1 1 13361 16827 2798 16623 25704 33240 33240 1 SQVFSTAADGQTQVEIK Unmodified 1807.8952 0.89520716 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 54.862 54.862 3 2.1395E-10 15890 TMT1-4 114.55 79.373 68.258 195.08 84.664 112.13 104.17 136.67 65 189 94 109 109 131 1 1 1 1 1 1 30905 16828 1058 16624 25705 33241 33241 1 SQVILGAHSITR Unmodified 1280.7201 0.72008375 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 8 0 1 39.288 39.288 3 0.00070074 9314 TMT1-7 80.371 56.398 184.97 275.08 238.51 156.66 212.79 264.69 175 274 243 160 219 254 1 1 1 1 1 1 20832 16829 671 16625 25706 33242 33242 1 SQVISNAK Unmodified 845.46068 0.46068117 1009 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 0 6 0 1 35.485 35.485 2 0.0059781 8386 TMT1-5 111.46 80.737 77.123 124.04 97.559 111.65 89.036 121.12 73 123 102 109 94 116 1 1 1 1 1 1 7528.3 16830 1009 16626 25707 33243 33243 1 SQVLQFFSSDICR Unmodified 1585.7559 0.75587691 749 P16671;P16671-4;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 8.5 0.5 2 2 70.413 70.413 2;3 2.1366E-16 19841 TMT1-8 148.52 131.49 391.63 523.42 461.27 360.48 467.05 537.79 370 524 472 363 480 517 5 5 5 5 5 5 244290 16831 749 16627 25708;25709;25710;25711 33244;33245;33246;33247;33248 33248 5 SQVMTHLR Unmodified 970.50183 0.50183448 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 7 0 1 31.089 31.089 3 0.0075244 6116 TMT1-6 77.732 57.107 23.218 44.794 27.276 29.127 50.19 52.934 22 44 29 29 51 51 1 1 1 1 1 1 4877.4 16832 482 16628 25712 33249 33249 1 SQVVAGTNYFIK Unmodified 1325.698 0.69795133 460 P04080 CSTB Cystatin-B yes yes 0 0 0 0 0 8 0 2 57.322 57.322 2;3 2.7438E-33 16470 TMT1-7 205.12 158.51 238.35 311.66 253.52 201.68 270.41 232.13 225 312 261 203 275 225 2 2 2 2 2 2 103990 16833 460 16629 25713;25714 33250;33251 33250 2 SQVVIPILQWAIASTTLDHR Unmodified 2247.2376 0.23755152 3031 Q9Y5L0-3;Q9Y5L0;Q9Y5L0-5;Q9Y5L0-1 TNPO3 Transportin-3 yes no 0 0 0 0 0 9 0 1 89.777 89.777 3 1.0646E-05 27354 TMT1-8 64.87 50.643 15.847 14.399 29.464 21.773 27.494 53.581 15 15 29 22 29 51 1 1 1 1 1 1 4069.8 16834 3031 16630 25715 33252 33252 1 SQWLNEK Unmodified 903.44503 0.4450311 591;927 P09488;P09488-2;Q03013-2;Q03013;Q03013-3;P28161;P28161-2 GSTM1;GSTM4;GSTM2 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 2 no no 0 0 0 0 0 7 0 1 46.995 46.995 2 0.0011228 12334 TMT1-6 110.41 67.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16835 591;927 16631 25716 33253 33253 1 SQWNNDNPLFK Unmodified 1361.6364 0.6364137 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 1 58.188 58.188 3 3.9212E-06 16767 TMT1-6 119.76 88.892 214.89 334.2 209.08 175.59 229.65 327.1 203 331 220 176 238 313 1 1 1 1 1 1 33466 16836 485 16632 25717 33254 33254 1 SQWSPALTISK Unmodified 1216.6452 0.64518747 1374 P62837-2;P62837;P61077;P61077-2;P61077-3 UBE2D2;UBE2D3 Ubiquitin-conjugating enzyme E2 D2;Ubiquitin-conjugating enzyme E2 D3 yes no 0 0 0 0 0 8.67 0.471 1 2 58.747 58.747 2;3 5.1355E-08 15189 TMT1-8 138.45 72.393 252.74 347.74 328.68 237.18 294.89 355.09 239 348 334 240 304 341 3 3 3 3 3 3 73138 16837 1374 16633 25718;25719;25720 33255;33256;33257 33256 3 SQWYELQQLDSK Acetyl (N-term) 1565.7362 0.73618733 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 1 0 0 0 0 4 0 1 74.124 74.124 3 1.3683E-06 23704 TMT1-3 75.695 20.27 46.606 73.874 39.202 83.936 62.072 60.057 44 73 44 80 65 58 1 1 1 1 1 1 20959 16838 1091 16634 25721 33258 33258 1 SQYEALKEDWR Unmodified 1423.6732 0.67319314 2948 Q9Y228;Q9Y228-2;Q9Y228-3 TRAF3IP3 TRAF3-interacting JNK-activating modulator yes no 0 0 0 0 1 5 0 1 49.191 49.191 3 0.002898 13671 TMT1-4 80.312 57.427 199.84 402.08 155.47 220.77 205.82 290.47 189 393 176 214 216 278 1 1 1 1 1 1 17136 16839 2948 16635 25722 33259 33259 1 SRDEWDK Unmodified 934.41446 0.41445926 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 1 4 0 1 32.694 32.694 3 0.01144 7399 TMT1-3 89.355 30.374 122.71 177.63 145.24 178.47 162.38 149.94 116 177 152 174 168 145 1 1 1 1 1 1 14738 16840 1552 16636 25723 33260 33260 1 SRPSQVLDSPFPTGSAFGFSLR Unmodified 2352.1862 0.18624423 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 8.5 0.5 1 1 68.5 68.5 3 3.651E-54 18799 TMT1-8 185.06 146.79 216.53 245.06 188.47 175.22 256.41 279.44 204 247 196 175 262 269 3 3 3 3 3 3 216680 16841 565 16637 25724;25725 33261;33262;33263 33263 3 SRPVINIQK Unmodified 1053.6295 0.62947783 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 9 0 1 39.718 39.718 3 0.0012024 8055 TMT1-8 99.34 43.624 215.82 168.42 193.08 199.32 180.59 231.5 203 175 197 196 189 222 1 1 1 1 1 1 19642 16842 856 16638 25726 33264 33264 1 SSAEVIAQAR Unmodified 1030.5407 0.5407224 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 4 0 1 35.438 35.438 2 1.3798E-06 8480 TMT1-3 162.49 93.648 145.52 267.71 201.54 199.35 152.48 197.12 138 264 210 196 161 189 1 1 1 1 1 1 50790 16843 1892 16639 25727 33265 33265 1 SSAHWWLAAR Unmodified 1183.5887 0.58867565 2804 Q9NZQ3-3;Q9NZQ3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-2 NCKIPSD NCK-interacting protein with SH3 domain yes no 0 0 0 0 0 9 0 1 45.926 45.926 3 0.00087656 10181 TMT1-8 79.974 52.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16844 2804 16640 25728 33266 33266 1 SSAIPDFRDPQK Unmodified 1359.6783 0.67827852 1270 P52594-2;P52594-3;P52594;P52594-4 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 0 0 1 6 0 1 46.031 46.031 3 0.0061235 12563 TMT1-5 67.749 43.495 146 242.05 143.77 122.1 200.56 179.76 138 239 152 123 203 174 1 1 1 1 1 1 18168 16845 1270 16641 25729 33267 33267 1 SSALLHDLR Unmodified 1010.5509 0.55089316 2285 Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 MADD MAP kinase-activating death domain protein yes no 0 0 0 0 0 6 0 1 40.541 40.541 3 0.0081053 10392 TMT1-5 69.276 27.296 100.12 92.488 46.48 59.45 62.391 83.5 94 94 51 58 65 80 1 1 1 1 1 1 9072.3 16846 2285 16642 25730 33268 33268 1 SSALQWLTPEQTSGK Unmodified 1631.8155 0.81550028 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 7.5 0.5 1 1 63.371 63.371 3 1.301E-06 18852 TMT1-7 103.17 83.777 399.95 449.6 387.83 334.4 401.33 506.62 377 454 399 334 415 486 3 3 3 3 3 3 53579 16847 608 16643 25731;25732 33269;33270;33271 33271 3 SSANVEEAFFTLAR Unmodified 1540.7522 0.75217174 2333 Q92930 RAB8B Ras-related protein Rab-8B yes yes 0 0 0 0 0 6 0 1 69.81 69.81 3 1.2988E-05 21913 TMT1-5 97.45 65.442 46.61 81.439 32.205 36.496 49.595 60.413 44 80 36 36 51 58 1 1 1 1 1 1 23319 16848 2333 16644 25733 33272 33272 1 SSAQDPQAVLGALGR Unmodified 1468.7634 0.76340513 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 6 0 1 56.741 56.741 2 9.6922E-06 16811 TMT1-5 102.57 72.9 38.07 50.85 50.685 28.165 27.2 53.59 36 51 51 29 29 51 1 1 1 1 1 1 8640.6 16849 903 16645 25734 33273 33273 1 SSAQGKPLALK Unmodified 1098.6397 0.63970816 1124 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 1 9 0 1 40.956 40.956 3 0.038444 8443 TMT1-8 44.847 25.085 46.45 96.106 46.547 59.135 78.918 59.576 44 94 51 58 80 58 1 1 1 1 1 1 3628 16850 1124 16646 25735 33274 33274 1 SSASAPDVDDPEAFPALA Unmodified 1758.7948 0.79482442 2207 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 0 2 0 1 71.219 71.219 3 5.9297E-08 23005 TMT1-1 97.797 86.742 46.824 35.626 34.958 60.669 34.081 53.393 44 37 37 58 37 51 2 2 2 2 2 2 23641 16851 2207 16647 25736 33275;33276 33275 2 SSASVSDSSGFSDSESADSLYR Unmodified 2239.9353 0.93529366 2655 Q9H4X1-2;Q9H4X1 RGCC Regulator of cell cycle RGCC yes no 0 0 0 0 0 2 0 1 50.353 50.353 3 4.367E-09 15092 TMT1-1 84.324 71.658 23.454 14.152 13.557 38.293 13.138 23.077 22 15 15 36 15 22 1 1 1 1 1 1 6957.6 16852 2655 16648 25737 33277 33277 1 SSAVDPEPQVK Unmodified 1155.5772 0.57716749 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 0 3 0 1 40.457 40.457 3 0.0054927 11464 TMT1-2 66.595 46.918 130.74 144.03 86.008 143.67 108.47 182.39 123 145 94 138 116 174 1 1 1 1 1 1 15934 16853 1970 16649 25738 33278 33278 1 SSAYESLMEIVK Unmodified 1355.6643 0.66426794 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 6 0 1 71.34 71.34 3 0.0096623 22486 TMT1-5 59.57 34.184 46.589 65.192 49.45 35.6 42.563 53.151 44 65 51 36 44 51 1 1 1 1 1 1 17058 16854 1803 16650 25739 33279 33279 1 SSDEAVILCK Unmodified 1120.5434 0.54342452 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 4 0 1 50.116 50.116 2 0.0079393 14307 TMT1-3 87.258 45.279 53.723 87.374 94.027 48.67 78.079 97.976 51 87 94 51 80 94 1 1 1 1 1 1 9897.1 16855 2930 16651 25740 33280 33280 1 SSDFLESAELDSGGFGK Unmodified 1744.7792 0.77917435 1716 Q13546;Q13546-2 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 yes no 0 0 0 0 0 4 0 1 68.332 68.332 3 1.1084E-18 21478 TMT1-3 110.38 74.725 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16856 1716 16652 25741 33281 33281 1 SSDILSVLK Unmodified 960.54916 0.54916182 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7.5 0.5 1 1 64.996 64.996 2 0.0058512 19425 TMT1-6 96.331 59.997 247.51 300.98 346.08 250.28 357.08 354.38 234 304 348 254 364 342 2 2 2 2 2 2 57903 16857 1723 16653 25742;25743 33282;33283 33282 2 SSDKEFSVQSSAR Unmodified 1426.6688 0.66883604 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 1 5 0 1 35.263 35.263 3 1.3698E-11 8169 TMT1-4 149.69 116.38 168.87 244.87 264.58 196.81 203.98 254.28 160 245 267 198 212 244 1 1 1 1 1 1 23429 16858 161 16654 25744 33284 33284 1 SSDPDYLAAVDK Unmodified 1279.5932 0.59321148 739 P16278;P16278-3 GLB1 Beta-galactosidase yes no 0 0 0 0 0 4 0 1 55.448 55.448 3 0.00233 16421 TMT1-3 54.199 29.073 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16859 739 16655 25745 33285 33285 1 SSDSDESYGEGCIALR Unmodified 1744.721 0.72100755 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 2 0 1 47.133 47.133 3 0.00040751 13791 TMT1-1 72.662 49.205 30.617 59.08 33.955 29.147 27.961 30.116 29 58 36 29 29 29 1 1 1 1 1 1 5558.9 16860 2320 16656 25746 33286 33286 1 SSDTLTR Unmodified 778.3821 0.38209649 322 O76074-2;O76074;P41180;P41180-2 PDE5A;CASR cGMP-specific 3',5'-cyclic phosphodiesterase;Extracellular calcium-sensing receptor yes no 0 0 0 0 0 2.5 0.5 1 1 25.642 25.642 2 0.00053511 5555 TMT1-2 152.31 26.11 77.086 131.49 97.453 103.99 89.644 113.64 73 130 102 102 94 109 2 2 2 2 2 2 14431 16861 322 16657 25747;25748 33287;33288 33288 2 SSEEIESAFR Unmodified 1153.5251 0.52513192 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 2.5 0.5 1 1 47.699 47.699 2 4.5409E-14 14262 TMT1-2 183.27 130.4 138.43 204.64 184.32 137.37 131.8 181.72 131 204 188 138 138 174 2 2 2 2 2 2 26039 16862 1737 16658 25749;25750 33289;33290 33290 2 SSEIEQAVQSLDR Unmodified 1460.7107 0.71070086 2505 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 0 0 0 0 0 2.5 0.5 1 1 60.745 60.745 3 2.1175E-08 19395 TMT1-2 121.56 90.331 38.896 73.832 72.795 35.144 50.96 52.912 37 73 73 37 52 51 2 2 2 2 2 2 11679 16863 2505 16659 25751;25752 33291;33292 33292 2 SSELQAIK Unmodified 874.476 0.47599688 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 5 0 1 44.125 44.125 2 0.030194 11651 TMT1-4 81.642 30.741 160.47 268.64 213.07 204.86 345.76 226.79 152 266 221 205 347 222 1 1 1 1 1 1 38767 16864 2896 16660 25753 33293 33293 1 SSEMNVLIPTEGGDFNEFPVPEQFK Unmodified 2810.3109 0.31091197 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 5.14 1.81 1 2 3 1 81.603 81.603 3;4;5 1.23E-07 26432 TMT1-4 72.033 57.872 533.39 785.35 578.12 526.01 710.12 731.27 504 781 602 525 726 705 10 10 10 10 10 10 365610 16865 1555;1556 16661 25754;25755;25756;25757;25758;25759;25760 33294;33295;33296;33297;33298;33299;33300;33301;33302;33303 33296 10 SSEMNVLIPTEGGDFNEFPVPEQFK Oxidation (M) 2826.3058 0.30582659 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 1 0 0 5 0 1 77.25 77.25 4 1.648E-07 24642 TMT1-4 72.033 65.806 38.072 50.855 50.373 35.141 64.059 67.462 36 51 51 36 65 65 1 1 1 1 1 1 27247 16866 1555;1556 16661 25761 33304 33304 251 1 SSENPNEVFR Unmodified 1177.5364 0.53636531 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 2.5 0.5 1 1 38.385 38.385 2 0.00053453 10624 TMT1-2 114.39 87.091 123.43 106.23 85.011 72.038 84.591 90.328 116 109 88 72 87 87 2 2 2 2 2 2 11543 16867 1122 16662 25762;25763 33305;33306;33307 33306 3 SSENPVR Unmodified 787.38243 0.38243085 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 4.67 3.09 1 1 1 22.76 22.76 2 7.0015E-05 4287 TMT1-1 157.9 103.84 470.97 471.42 514.94 358.36 467.78 367.21 444 481 519 364 475 357 4 4 4 4 4 4 72145 16868 393 16663 25764;25765;25766 33308;33309;33310;33311;33312 33309 5 SSEQILATLK Unmodified 1088.6077 0.60773933 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 0 7 0 1 58.089 58.089 2 0.0060072 16698 TMT1-6 90.05 34.483 99.243 223.88 82.432 119.93 103.3 151.62 94 218 94 116 109 145 1 1 1 1 1 1 12490 16869 2918 16664 25767 33313 33313 1 SSEYHLEDNAAYYLNDLER Unmodified 2301.0186 0.018569775 785 P19086 GNAZ Guanine nucleotide-binding protein G(z) subunit alpha yes yes 0 0 0 0 0 3 0 2 62.209 62.209 3 1.6272E-13 20035 TMT1-2 112.55 98.089 15.791 36.908 19.839 37.514 34.649 37.387 15 36 22 36 36 36 1 1 1 1 1 1 26611 16870 785 16665 25768;25769 33314;33315 33314 2 SSFADISNLLQIEPR Unmodified 1688.8733 0.87334951 1874 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 0 7 0 1 78.798 78.798 3 2.0372E-05 24829 TMT1-6 90.725 76.819 30.717 28.059 43.43 52.511 34.216 29.938 29 29 44 51 36 29 1 1 1 1 1 1 5043.7 16871 1874 16666 25770 33316 33316 1 SSFLPEDEKR Unmodified 1206.5881 0.58806652 403 P00813 ADA Adenosine deaminase yes yes 0 0 0 0 1 5 0 1 41.925 41.925 3 0.0027582 10836 TMT1-4 86.014 57.39 77.215 92.997 108.43 79.541 76.367 106.55 73 94 109 80 80 102 1 1 1 1 1 1 10590 16872 403 16667 25771 33317 33317 1 SSFREEDNTYR Unmodified 1402.6113 0.61132116 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 1 3 0 1 30.108 30.108 3 0.0030849 7353 TMT1-2 79.23 52.632 77.51 78.707 70.956 65.49 70.49 83.269 73 80 73 65 73 80 1 1 1 1 1 1 8174.8 16873 199 16668 25772 33318 33318 1 SSFSQHAR Unmodified 918.43078 0.43077802 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 6 0 1 20.484 20.484 3 0.0024947 3679 TMT1-5 96.027 75.723 5.3239 4.9152 2.7426 4.0784 6.9218 6.1985 5 5 3 4 7 6 1 1 1 1 1 1 369.01 16874 429 16669 25773 33319 33319 1 SSFTVDCSK Unmodified 1029.4437 0.44371047 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 2.28 1 2 1 1 43.187 43.187 2;3 1.0842E-13 11325 TMT1-5 186.76 164.72 2218.6 2578.3 2751.7 1932.7 2190.4 3018.2 2095 2607 2776 1956 2278 2890 6 6 6 6 6 6 601830 16875 831 16670 25774;25775;25776;25777;25778 33320;33321;33322;33323;33324;33325 33323 6 SSFYVNGLTLGGQK Unmodified 1469.7514 0.75144346 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 0 8.67 0.471 1 2 62.3 62.3 2;3 1.4562E-19 16619 TMT1-8 167.71 90.885 314.78 390.44 324.45 267.65 373.81 453.04 297 392 334 269 384 435 3 3 3 3 3 3 80014 16876 540 16671 25779;25780;25781 33326;33327;33328 33328 3 SSGGFVWACK Unmodified 1097.4964 0.49641475 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 54.222 54.222 2 6.5656E-06 13378 TMT1-8 144.09 88.719 261.11 375.71 340.05 283.49 295.52 396.65 247 375 348 283 308 380 3 3 3 3 3 3 40483 16877 1164 16672 25782;25783 33329;33330;33331 33330 3 SSGGLLGFWK Unmodified 1050.5498 0.54983053 2252 Q8TD55 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes yes 0 0 0 0 0 9 0 1 69.504 69.504 3 0.0032058 19453 TMT1-8 70.1 40.116 38.118 43.427 48.994 76.103 40.701 53.205 36 44 51 73 44 51 1 1 1 1 1 1 8246.9 16878 2252 16673 25784 33332 33332 1 SSGGREDLESSGLQR Unmodified 1576.7441 0.74412625 2891 Q9UK76-3;Q9UK76;Q9UK76-2 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 0 0 1 2 0 1 31.258 31.258 3 1.8879E-05 7487 TMT1-1 93.51 77.691 38.199 43.652 35.186 21.421 28.06 37.575 36 44 36 22 29 36 1 1 1 1 1 1 4809.9 16879 2891 16674 25785 33333 33333 1 SSGIHVALVTGGNK Acetyl (Protein N-term) 1380.7361 0.73612775 735 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 1 0 0 0 6 0 1 50.217 50.217 2 5.0818E-19 14210 TMT1-5 64.439 39.584 61.714 64.451 32.779 44.784 71.992 67.236 58 65 36 44 73 65 1 1 1 1 1 1 16743 16880 735 16675 25786 33334 33334 1 SSGPTSLFAVTVAPPGAR Unmodified 1713.905 0.90498399 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 9 0 2 64.01 64.01 2;3 5.146E-40 17269 TMT1-8 177.12 145.52 222.43 307.87 225.88 173.11 191.91 363.36 210 307 234 174 203 346 2 2 2 2 2 2 54701 16881 1545 16676 25787;25788 33335;33336 33335 2 SSGPYGGGGQYFAK Unmodified 1374.6204 0.62042929 601 P09651-3;P09651-2;P09651;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 0 7 0 1 47.911 47.911 3 0.0019429 12664 TMT1-6 65.895 32.01 91.672 176.74 132.35 132.39 154.51 197.06 87 174 138 131 160 189 1 1 1 1 1 1 18315 16882 601 16677 25789 33337 33337 1 SSGPYGGGGQYFAKPR Unmodified 1627.7743 0.77430417 601 P09651-3;P09651-2;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 1 7.5 0.5 1 1 42.643 42.643 3 5.3515E-20 10702 TMT1-6 162 126.11 330.04 612.58 276.72 309.48 393.19 594.27 312 601 304 305 409 568 3 3 3 3 3 3 95410 16883 601 16678 25790;25791 33338;33339;33340 33338 3 SSGQPVTFTDIFGMLIGETLIHNR Unmodified 2632.3319 0.33192219 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 9 0 1 95.569 95.569 3 0.027723 29476 TMT1-8 31.384 21.635 7.396 15.356 6.3095 6.8676 21.656 30.296 7 15 7 7 22 29 1 1 1 1 1 1 2715.3 16884 1142 16679 25792 33341 33341 1 SSGSPYGGGYGSGGGSGGYGSR Unmodified 1909.7827 0.7826966 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 0 3 0 1 36.174 36.174 3 6.5172E-46 9767 TMT1-2 160.05 151.23 85.142 54.785 70.926 97.502 53.826 68.82 80 58 73 94 58 66 2 2 2 2 2 2 24402 16885 1259 16680 25793 33342;33343 33342 2 SSGTNFQGLPSK Unmodified 1221.599 0.59896556 2006 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 0 7 0 1 46.769 46.769 3 3.8691E-06 12244 TMT1-6 93.011 61.825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16886 2006 16681 25794 33344 33344 1 SSGTVYPK Unmodified 837.42323 0.42323303 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 6 0 1 35.939 35.939 2 0.019908 8567 TMT1-5 89.046 51.438 61.582 72.719 47.87 59.225 69.972 106.74 58 73 51 58 73 102 1 1 1 1 1 1 7429.4 16887 3029 16682 25795 33345 33345 1 SSGVALSIAVGLLECTFPNTGAR Unmodified 2319.1893 0.18928069 1857 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 0 9 0 1 92.746 92.746 3 2.6965E-09 28431 TMT1-8 73.672 50.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16888 1857 16683 25796 33346 33346 1 SSGVPVDGFYTEEVR Unmodified 1640.7682 0.76821573 2522 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 0 0 3 0 1 55.553 55.553 3 0.00021625 17449 TMT1-2 57.288 51.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16889 2522 16684 25797 33347 33347 1 SSGYPLTIEGFAYLWSGAR Unmodified 2074.016 0.015991 2540 Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 0 9 0 1 86.596 86.596 3 0.040835 26087 TMT1-8 31.965 8.2827 15.74 36.767 28.461 14.17 28.1 46.102 15 36 29 15 29 44 1 1 1 1 1 1 7612.2 16890 2540 16685 25798 33348 33348 1 SSHYDELLAAEAR Unmodified 1460.6896 0.68957148 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 4 1 1 1 43.325 43.325 3 8.0556E-11 12765 TMT1-2 130.1 112.5 245.34 324.82 329.02 261.33 288.31 331.83 232 326 334 262 298 319 4 4 4 4 4 4 68936 16891 2071 16686 25799;25800 33349;33350;33351;33352 33350 4 SSIAGLLLK Unmodified 900.56442 0.56441796 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 9 0 1 66.202 66.202 2 0.0017911 18220 TMT1-8 114.28 58.605 291.59 400.75 246.83 225.79 288.33 378.73 275 399 261 225 298 363 3 3 3 3 3 3 32716 16892 1833 16687 25801 33353;33354;33355 33355 3 SSIDSEPALVLGPLK Unmodified 1524.8399 0.83992412 1498 Q5JPE7-2;Q15155;P69849;Q5JPE7;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 0 6 0 1 68.322 68.322 3 1.4934E-05 21373 TMT1-5 70.373 57.841 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16893 1498 16688 25802 33356 33356 1 SSIGTGYDLSASTFSPDGR Acetyl (Protein N-term) 1958.8858 0.88576469 892 P25788-2;P25788 PSMA3 Proteasome subunit alpha type-3 yes no 0 1 0 0 0 3 0 1 68.951 68.951 2 2.3975E-62 22747 TMT1-2 101.45 80.057 7.4361 14.167 13.615 14.491 0 15.99 7 14 14 14 0 15 1 2 2 2 0 1 15948 16894 892 16689 25803 33357;33358 33358 2 SSLEELHGDANWGEDLR Unmodified 1926.8708 0.87078333 2859 Q9UH99-2;Q9UH99;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 54.382 54.382 3 9.9104E-25 17011 TMT1-2 149.97 123.67 61.629 72.849 39.933 67.188 78.547 59.587 58 73 44 65 80 58 1 1 1 1 1 1 22598 16895 2859 16690 25804 33359 33359 1 SSLEGPTILDIEK Unmodified 1400.7399 0.73987572 2079 Q7L576;Q7L576-2 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 5 0 1 65.301 65.301 3 8.0909E-05 19973 TMT1-4 94.688 63.86 84.501 163.09 86.836 104.62 89.872 106.17 80 160 94 102 94 102 1 1 1 1 1 1 28782 16896 2079 16691 25805 33360 33360 1 SSLFLWVR Unmodified 1006.56 0.56000128 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 9 0 1 69.514 69.514 2 0.0076394 19487 TMT1-8 87.323 37.964 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16897 535 16692 25806 33361 33361 1 SSLGPVGLDK Unmodified 971.52876 0.52876073 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 6.5 0.5 1 1 51.27 51.27 2 5.8129E-06 14126 TMT1-6 121.5 74.435 439.73 539.03 478.81 231.62 347.38 661.67 415 542 484 244 364 630 2 2 2 2 2 2 62367 16898 770 16693 25807;25808 33362;33363;33364 33364 3 SSLLDDLLTESEDMAQR Unmodified 1921.8939 0.89388653 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 4.33 0.471 2 1 86.008 86.008 2;3 4.5373E-18 28317 TMT1-3 111.79 90.542 16.003 0 15.472 15.195 14.75 7.0411 15 0 15 15 15 7 1 0 1 1 1 1 14247 16899 68 16694 25809;25810;25811 33365;33366;33367 33366 3 SSLLPTDYLVEINK Unmodified 1590.8505 0.8504888 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 7 0 1 74.288 74.288 3 5.9048E-05 23141 TMT1-6 89.013 69.435 30.621 59.092 33.226 45.482 33.476 60.873 29 58 36 44 36 58 1 1 1 1 1 1 7063.3 16900 1138 16695 25812 33368 33368 1 SSLNPILFR Unmodified 1045.592 0.59202969 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 9 0 1 58.648 58.648 2 0.00078628 15129 TMT1-8 130.31 82.962 252.65 378.79 317.15 260.09 333.9 315.6 239 377 326 261 341 305 2 2 2 2 2 2 51605 16901 1063 16696 25813 33369;33370 33369 2 SSLPAVSDAR Unmodified 1001.5142 0.5141733 3064 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 0 0 0 0 0 4 0 1 38.286 38.286 2 0.010638 9593 TMT1-3 83.358 33.822 84.31 162.56 119.42 78.201 112.8 143.89 80 160 123 80 116 138 1 1 1 1 1 1 16205 16902 3064 16697 25814 33371 33371 1 SSLPNFK Unmodified 791.41775 0.41775372 2928 Q9UNH7 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes yes 0 0 0 0 0 8 0 1 48.573 48.573 2 0.015963 13029 TMT1-7 100.75 49.789 222.56 279.07 229.8 245.51 281.61 243.54 210 280 239 242 288 236 1 1 1 1 1 1 24901 16903 2928 16698 25815 33372 33372 1 SSLPPVLGTESDATVK Unmodified 1599.8356 0.83556702 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5 0 2 57.664 57.664 2;3 6.4814E-11 17005 TMT1-4 121.69 105.06 269.55 319.49 231.88 163.34 285.72 294.59 254 321 240 167 290 284 3 3 3 3 3 3 27377 16904 1870 16699 25816;25817 33373;33374;33375 33375 3 SSLSSAQADFNQLAELDR Unmodified 1950.9283 0.92829821 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 66.698 66.698 3 3.0132E-27 20825 TMT1-3 163.35 139.13 38.137 58.591 32.883 53.007 41.25 68.113 36 58 36 51 44 65 1 1 1 1 1 1 21182 16905 1737 16700 25818 33376 33376 1 SSLSVPYVIVPLK Unmodified 1400.8279 0.82790287 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 9 0 1 73.349 73.349 2 6.0464E-11 20977 TMT1-8 127.76 93.512 30.766 28.195 35.072 45.638 19.36 45.286 29 29 36 44 22 43 1 1 1 1 1 1 5966.5 16906 409 16701 25819 33377 33377 1 SSMFQVR Unmodified 853.41162 0.41162248 749 P16671;P16671-3;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 8 0 1 42.937 42.937 2 0.0021944 10773 TMT1-7 143.23 87.625 183.92 254.72 251 170.91 229.42 279.14 174 255 254 174 236 268 1 1 1 1 1 1 54718 16907 749 16702 25820 33378 33378 1 SSMNPEYDYLFK Acetyl (N-term) 1534.665 0.66499622 1444 P62820;P62820-2;P62820-3 RAB1A Ras-related protein Rab-1A yes no 1 0 0 0 0 4 0 1 76.164 76.164 2 5.2832E-11 24541 TMT1-3 73.721 57.497 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16908 1444 16703 25821 33379 33379 1 SSMSVTSLEAELQAK Unmodified 1579.7763 0.77633758 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 5 0 1 66.552 66.552 3 4.3431E-08 20471 TMT1-4 113.25 91.695 54.081 80.814 39.472 67.674 54.171 98.658 51 80 44 65 58 94 1 1 1 1 1 1 13641 16909 2664 16704 25822 33380 33380 1 SSPAADAQEENLYAAVK Unmodified 1762.8374 0.83735793 2176 Q8N423-4;Q8N423-2;Q8N423;Q8NHL6;Q8NHL6-4;Q8NHL6-2;Q8NHL6-3 LILRB2;LILRB1 Leukocyte immunoglobulin-like receptor subfamily B member 2;Leukocyte immunoglobulin-like receptor subfamily B member 1 yes no 0 0 0 0 0 4 0 1 54.427 54.427 3 1.3186E-05 16020 TMT1-3 65.716 37.419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16910 2176 16705 25823 33381 33381 1 SSPAAKPGSTPSRPSSAK Unmodified 1711.8853 0.88531118 1862 Q15555-5;Q15555-3;Q15555;Q15555-4;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 2 9 0 1 29.033 29.033 4 4.7668E-07 4679 TMT1-8 79.332 39.145 138.84 177.71 138.58 155.95 102.4 220.94 131 178 145 152 112 210 1 1 1 1 1 1 11597 16911 1862 16706 25824 33382 33382 1 SSPDDPNYSLVDDYSLLYQ Unmodified 2189.9641 0.96407459 2662 Q9H939 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes yes 0 0 0 0 0 3.5 0.5 1 1 83.729 83.729 3 3.1784E-13 28303 TMT1-2 108.34 108.34 39.02 73.964 64.427 52.768 12.156 30.746 37 73 66 52 14 29 2 3 3 3 2 2 16407 16912 2662 16707 25825;25826 33383;33384;33385 33384 3 SSPEPVALTESETEYVIR Unmodified 2005.9844 0.9844161 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 3 0 1 61.659 61.659 3 1.8582E-14 19846 TMT1-2 124.69 109.06 54.186 57.363 41.581 51.902 72.434 44.837 51 58 44 51 73 44 1 1 1 1 1 1 20421 16913 3047 16708 25827 33386 33386 1 SSPPGHYYQK Unmodified 1162.5407 0.5407224 2772 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 0 0 0 7 1 1 1 31.363 31.363 3 0.0034747 6778 TMT1-5 76.943 51.506 114.54 244.31 199.09 143.72 154.03 196.01 109 240 204 145 160 188 2 2 2 2 2 2 9335.7 16914 2772 16709 25828;25829 33387;33388 33387 2 SSPPVQFSLLHSK Unmodified 1425.7616 0.76161421 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 9 0 1 52.437 52.437 3 1.3799E-09 12797 TMT1-8 115.91 82.321 77.555 78.832 63.313 42.559 93.532 82.611 73 80 65 44 94 80 1 1 1 1 1 1 8041.4 16915 369 16710 25830 33389 33389 1 SSPPWFIVDRPFLFFIR Unmodified 2123.1357 0.13565263 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 1 9 0 1 87.781 87.781 3 0.017002 26639 TMT1-8 44.005 30.578 15.702 45.296 27.601 22.007 20.96 30.316 15 44 29 22 22 29 1 1 1 1 1 1 8180.9 16916 525 16711 25831 33390 33390 1 SSPVDLVTATDQKVEK Unmodified 1715.8941 0.89414453 935 P29218;P29218-3;P29218-2 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 0 1 6 0 1 55.737 55.737 3 0.00047863 16418 TMT1-5 75.143 45.389 99.898 91.873 84.188 88.216 98.746 113.38 94 94 87 87 102 109 1 1 1 1 1 1 8346.2 16917 935 16712 25832 33391 33391 1 SSPVEFECINEK Unmodified 1437.6446 0.64459513 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 4 0 1 53.577 53.577 3 0.00010985 15669 TMT1-3 97.957 60.344 107.7 191.63 131.77 123.64 156.78 142.63 102 189 138 123 160 138 1 1 1 1 1 1 22045 16918 252 16713 25833 33392 33392 1 SSPVVIDASTAIDAPSNLR Unmodified 1911.9902 0.99017018 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 5 0 1 60.871 60.871 2 5.5693E-23 18279 TMT1-4 138.21 95.238 7.198 37.47 20.856 14.894 13.701 37.985 7 36 22 15 15 36 1 1 1 1 1 1 8031.5 16919 442 16714 25834 33393 33393 1 SSPYPTDVAR Unmodified 1091.5247 0.52473799 1566 Q02218;Q02218-2;Q9ULD0-3;Q9ULD0-2;Q9ULD0 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 36.983 36.983 2 5.1091E-05 10103 TMT1-2 146.27 122.92 99.392 161.7 110.08 117.28 156.56 157.56 94 160 116 116 160 152 1 1 1 1 1 1 20774 16920 1566 16715 25835;25836 33394;33395 33394 2 SSQELEGSCR Unmodified 1151.4877 0.48770055 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 2 0 1 27.747 27.747 2 2.5421E-14 6109 TMT1-1 187.33 166.59 37.964 74.3 48.554 44.41 41.902 60.632 36 73 51 44 44 58 1 1 1 1 1 1 8188.2 16921 485 16716 25837 33396 33396 1 SSQLLWEALESLVNR Unmodified 1743.9155 0.91554867 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 9 0 2 93.97 93.97 2;3 3.1252E-19 28938 TMT1-8 135.89 92.707 70.195 57.101 56.361 58.709 70.509 91.796 66 59 58 58 73 88 2 2 2 2 2 2 41981 16922 1916 16717 25838;25839 33397;33398 33398 2 SSQPLASK Unmodified 816.43413 0.43413207 755 P17096-3;P17096;P17096-2 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 0 0 6 0 1 34.097 34.097 2 0.0050085 7814 TMT1-5 120.99 56.231 115.63 144.8 100.95 173.33 169.41 134.81 109 145 109 167 174 131 1 1 1 1 1 1 13975 16923 755 16718 25840 33399 33399 1 SSQTSGTNEQSSAIVSAR Unmodified 1808.85 0.85004788 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 3.5 0.5 1 1 32.856 32.856 3 3.1223E-20 8473 TMT1-2 141.22 90.128 15.793 36.914 19.448 46.289 34.245 37.399 15 36 22 44 36 36 1 1 1 1 1 1 11415 16924 237 16719 25841;25842 33400;33401 33400 2 SSQVAIEALSAMPTVR Unmodified 1658.8662 0.86615564 1578 Q03518 TAP1 Antigen peptide transporter 1 yes yes 0 0 0 0 0 7 0 1 65.302 65.302 3 0.037815 19546 TMT1-6 38.996 27.382 46.832 43.203 27.239 29.43 34.214 60.852 44 44 29 29 36 58 1 1 1 1 1 1 8613.2 16925 1578 16720 25843 33402 33402 1 SSSGLLEWESK Unmodified 1221.5877 0.58773217 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 5.67 0.471 1 2 57.693 57.693 2;3 3.3764E-05 17173 TMT1-5 116.55 61.938 390.77 614.92 528.26 482.37 457.14 632.95 370 611 544 478 479 606 3 3 3 3 3 3 90673 16926 713 16721 25844;25845;25846 33403;33404;33405 33404 3 SSSGTPDLPVLLTDLK Acetyl (Protein N-term) 1683.8931 0.8930819 386 P00352 ALDH1A1 Retinal dehydrogenase 1 yes yes 0 1 0 0 0 5 0 1 88.868 88.868 3 0.0015539 29241 TMT1-4 54.234 24.546 38.133 67.215 26.174 21.969 27.485 53.582 36 66 29 22 29 51 1 1 1 1 1 1 8616.9 16927 386 16722 25847 33406 33406 1 SSSISSFK Unmodified 841.41815 0.41814765 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 7.67 0.471 1 2 43.354 43.354 2;3 0.00031216 10934 TMT1-7 152.63 89.972 606.53 909.45 624.7 592.25 701.8 732.57 573 903 655 588 721 706 3 3 3 3 3 3 67412 16928 690 16723 25848;25849;25850 33407;33408;33409 33408 3 SSSISSFKDPK Unmodified 1181.5928 0.59281755 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 1 7.5 0.5 1 1 43.041 43.041 3 1.1167E-07 10830 TMT1-6 151.26 108.86 3643.5 5950.2 3678.4 3557.8 4552.3 5381.3 3444 5881 3893 3534 4685 5170 4 4 4 4 4 4 360180 16929 690 16724 25851;25852 33410;33411;33412;33413 33411 4 SSSLASNR Unmodified 820.40389 0.40389457 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5 0 1 22.875 22.875 2 0.036704 3784 TMT1-4 78.324 36.431 10.612 6.4916 14.408 6.6636 6.8396 5.1348 10 7 14 7 7 5 1 1 1 1 1 1 770.97 16930 2066 16725 25853 33414 33414 1 SSSLPAYGR Unmodified 936.46649 0.46649483 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 5 0 1 36.07 36.07 2 0.0015839 8479 TMT1-4 117.39 66.49 68.817 94.101 76.269 96.493 90.539 97.62 65 94 80 94 94 94 1 1 1 1 1 1 7087.8 16931 1623 16726 25854 33415 33415 1 SSSPLSSTR Unmodified 920.45632 0.45632407 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 5.5 0.5 1 1 28.399 28.399 2 0.00070611 5506 TMT1-4 130.31 74.296 46.416 65.789 78.067 96.786 69.307 75.84 44 66 80 94 73 73 2 2 2 2 2 2 7064.4 16932 333 16727 25855;25856 33416;33417 33416 2 SSSSVTTSETQPCTPSSSDYSDLQR Unmodified 2706.1563 0.15626182 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 2.5 0.5 1 1 44.269 44.269 3 1.9741E-19 12913 TMT1-2 112.41 105.3 70.054 64.265 73.901 43.953 64.114 84.516 66 66 74 44 66 81 3 3 3 2 3 3 65496 16933 1225 16729 25857;25858 33418;33419;33420 33419 3 SSSVTSIDKESR Unmodified 1294.6365 0.63647328 1978 Q5T5C0-3;Q5T5C0-2;Q5T5C0 STXBP5 Syntaxin-binding protein 5 yes no 0 0 0 0 1 5 0 1 33.461 33.461 3 0.011953 7466 TMT1-4 63.091 42.629 53.916 87.911 61.11 82.472 70.515 59.816 51 87 65 80 73 58 1 1 1 1 1 1 5462 16934 1978 16730 25859 33421 33421 1 SSTAAQEVK Unmodified 919.46108 0.4610751 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 4 0 2 31.061 31.061 2;3 0.001419 6752 TMT1-3 119.75 74.435 130.68 143.86 96.495 102.79 98.626 97.39 123 145 102 101 102 94 2 2 2 2 2 2 15554 16935 2822 16731 25860;25861 33422;33423 33422 2 SSTIQDQK Unmodified 905.44543 0.44542503 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 0 4 0 1 31.649 31.649 2 0.0056662 7001 TMT1-3 115.7 77.461 69.08 55.978 64.372 50.543 72.496 44.835 65 58 65 51 73 44 1 1 1 1 1 1 5071.6 16936 3064 16732 25862 33424 33424 1 SSTKPAAGGTAPLPPWK Unmodified 1664.8886 0.88860564 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 1 9 0 2 49.299 49.299 3;4 1.8126E-08 11501 TMT1-8 93.754 65.457 1564.7 1948.5 1373.7 1385.7 1530.5 2009.4 1475 1952 1442 1369 1590 1926 5 5 5 5 5 5 121620 16937 1881 16733 25863;25864 33425;33426;33427;33428;33429 33427 5 SSTPEEVK Unmodified 875.42363 0.42362696 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 32.904 32.904 2 0.00026994 8449 TMT1-2 153.04 86.354 2331.9 2460.4 3106.7 2052.1 2853.4 2281.9 2202 2509 3103 2096 2893 2217 6 6 6 6 6 6 582810 16938 865 16734 25865;25866;25867;25868 33430;33431;33432;33433;33434;33435 33433 6 SSTPEEVKK Unmodified 1003.5186 0.51858998 865 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 1 5 0 2 32.235 32.235 2;3 0.00082111 6976 TMT1-4 89.698 47.719 1496.6 1198.7 1372.1 981.93 1615.3 933.56 1408 1243 1382 1001 1618 919 2 2 2 2 2 2 183050 16939 865 16735 25869;25870 33436;33437;33438 33438 3 SSTPLPTISSSAENTR Unmodified 1646.8111 0.81114318 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 5 0 1 45.032 45.032 3 1.2585E-06 11990 TMT1-4 95.236 81.078 84.533 115.69 121.55 93.665 97.433 144.33 80 116 123 94 102 138 1 1 1 1 1 1 25566 16940 1089;1090 16736 25871 33439 33439 1 SSTQFNK Acetyl (Protein N-term) 852.39775 0.39774656 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 1 0 0 0 2.5 1.5 1 1 39.886 39.886 2 0.0016054 10263 TMT1-3 72.021 35.835 425.21 624.74 502.34 415.43 495.37 583.89 402 622 518 416 511 561 3 3 3 3 3 3 151180 16941 2463 16737 25872;25873 33440;33441;33442 33442 3 SSTSNANDIIPECADK Unmodified 1720.7574 0.75739305 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 3 0 1 47.761 47.761 3 3.756E-09 14363 TMT1-2 114.29 87.263 138.16 143.26 101.67 156.58 185.89 134.34 130 145 109 152 189 131 2 2 2 2 2 2 15134 16942 1723 16738 25874 33443;33444 33443 2 SSTSPNLQK Acetyl (Protein N-term) 1002.4982 0.49818889 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 1 0 0 0 3 0 1 39.831 39.831 2 0.0015092 11240 TMT1-2 91.065 45.753 37.913 65.522 64.674 34.426 56.763 67.67 36 65 65 36 58 65 1 1 1 1 1 1 11405 16943 267 16739 25875 33445 33445 1 SSVDPAIFAF Unmodified 1052.5179 0.51786169 79 O00534 VWA5A von Willebrand factor A domain-containing protein 5A yes yes 0 0 0 0 0 6 0 1 82.09 82.09 2 0.0023233 26759 TMT1-5 68.787 41.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16944 79 16740 25876 33446 33446 1 SSVGWDATEDLR Unmodified 1334.6103 0.61025853 1095 P42331-6;P42331-4;P42331-3;P42331;P42331-2;P42331-5 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 3 0 1 52.622 52.622 2 3.2274E-08 16264 TMT1-2 136.5 97.696 54.095 88.407 30.698 60.091 78.324 75.583 51 87 36 58 80 73 1 1 1 1 1 1 12586 16945 1095 16741 25877 33447 33447 1 SSVLEALSGVALPR Unmodified 1397.7878 0.78782897 812 P20591 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed no no 0 0 0 0 0 9 0 1 73.973 73.973 3 1.1986E-05 21257 TMT1-8 94.551 73.599 30.693 44.181 33.806 52.529 63.772 52.546 29 44 36 51 65 51 1 1 1 1 1 1 8333.5 16946 812 16742 25878 33448 33448 1 SSVLENFVGR Unmodified 1106.572 0.57202253 1226;1591;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM1;DNM3 Dynamin-2;Dynamin-1;Dynamin-3 no no 0 0 0 0 0 7 0 1 57.329 57.329 2 0.00066506 16382 TMT1-6 110.47 70.122 138.69 149.22 188.78 136.24 177.49 162.3 131 152 189 138 181 157 1 1 1 1 1 1 49859 16947 1226;1591;2942 16743 25879 33449 33449 1 SSVLESLVGR Unmodified 1045.5768 0.57677356 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 7 0 1 60.155 60.155 2 0.0022821 17625 TMT1-6 99.855 41.429 92.033 138.89 103.88 118.07 134.55 127.28 87 138 109 116 138 123 1 1 1 1 1 1 98350 16948 68 16744 25880 33450 33450 1 SSVPGVR Unmodified 700.38679 0.38678794 575 P08670;Q76ZA3;P03489;P13879;Q71UK7;P13880;P06816 VIM Vimentin yes no 0 0 0 0 0 5.5 0.5 1 1 30.288 30.288 2 0.0071055 6190 TMT1-4 130.05 9.1534 322.06 524.2 249.61 358.04 395.87 451.35 304 517 276 348 409 434 2 2 2 2 2 2 87197 16949 575 16745 25881;25882 33451;33452 33451 2 SSYVLSK Unmodified 782.41742 0.41741937 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 44.131 44.131 2 0.021437 11164 TMT1-6 96.492 39.211 276.23 372.79 326.44 323.93 397.16 428.92 261 373 337 321 408 413 2 2 2 2 2 2 28838 16950 1112 16746 25883 33453;33454 33453 2 STAALEEDAQILK Unmodified 1387.7195 0.71947463 1755;1821 Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;Q15052;Q15052-2 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 no no 0 0 0 0 0 4 0 1 59.57 59.57 2 0.00038908 18075 TMT1-3 95.417 45.294 46.703 50.4 42.77 35.427 72.935 52.285 44 51 44 36 73 51 1 1 1 1 1 1 8122.9 16951 1755;1821 16747 25884 33455 33455 1 STADALDDENTFK Acetyl (Protein N-term) 1467.6365 0.63653286 1210 P49959-2;P49959 MRE11A Double-strand break repair protein MRE11A yes no 0 1 0 0 0 2 0 1 59.658 59.658 2 3.8921E-06 18710 TMT1-1 72.2 60.469 30.917 13.505 22.179 14.801 14.475 15.577 29 15 22 15 15 15 1 1 1 1 1 1 4067.6 16952 1210 16749 25885 33456 33456 1 STAGDTHLGGEDFDNR Unmodified 1690.7183 0.71830543 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 0 3.67 1.25 1 1 1 36.257 36.257 3 3.0625E-29 9672 TMT1-1 189.33 179.41 422.88 490.38 465.87 468.05 602.83 552.04 399 495 479 464 615 534 5 5 5 5 5 5 289830 16953 641 16750 25886;25887;25888 33457;33458;33459;33460;33461 33458 5 STAISLFYELSENDLNFIK Unmodified 2203.1049 0.10486559 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 7.67 0.471 1 2 94.32 94.32 3;4 5.6229E-31 30696 TMT1-6 151.04 129.03 172.54 241.58 191.94 204.2 215.32 218.78 163 241 200 201 222 211 6 6 6 6 6 6 39292 16954 685 16751 25889;25890;25891 33462;33463;33464;33465;33466;33467 33464 6 STASALTK Unmodified 777.42323 0.42323303 2100 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 0 6 0 1 36.387 36.387 2 0.013027 8774 TMT1-5 95.815 44.48 38.154 43.527 42.823 44.471 56.814 52.745 36 44 44 44 58 51 1 1 1 1 1 1 3546.1 16955 2100 16752 25892 33468 33468 1 STAYEDYYYHPPPR Unmodified 1757.7686 0.76855009 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 4 0 1 42.811 42.811 3 6.9792E-06 11415 TMT1-3 100.73 89.114 84.801 116.44 75.877 73.401 99.171 120.83 80 116 80 73 102 116 1 1 1 1 1 1 12339 16956 170 16753 25893 33469 33469 1 STCIYGGAPK Unmodified 1052.4961 0.4960804 2321;764 P17844-2;P17844;Q92841-1;Q92841-3;Q92841;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 0 6.5 0.5 1 1 41.122 41.122 2 0.00012169 10545 TMT1-5 137.13 113.1 130.28 190.24 123.74 133.19 139.28 182.58 123 189 131 131 145 175 2 2 2 2 2 2 16927 16957 764;2321 16754 25894;25895 33470;33471 33470 2 STCQFICDEGYSLSGPER Unmodified 2104.883 0.88300427 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 4 0 2 57.169 57.169 2;3 2.6104E-24 17089 TMT1-3 148.52 132.97 69.657 133.31 82.17 81.122 75.525 128.96 66 131 87 80 80 123 2 2 2 2 2 2 125730 16958 733 16755 25896;25897 33472;33473 33472 2 STCTYVGAAK Unmodified 1056.491 0.49099502 1047;2832 P36959;Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR;GMPR2 GMP reductase 1;GMP reductase 2 no no 0 0 0 0 0 6 0 2 37.81 37.81 2;3 2.4456E-06 9323 TMT1-5 158.76 139.98 168.88 263.23 248.07 226.98 221.04 326.28 160 262 254 225 232 312 2 2 2 2 2 2 25641 16959 1047;2832 16756 25898;25899 33474;33475 33475 2 STCVLEAFGNAR Unmodified 1323.6241 0.62413446 20 B0I1T2;B0I1T2-4;B0I1T2-3;B0I1T2-2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 0 7 0 1 54.398 54.398 2 8.8082E-05 15272 TMT1-6 105.13 58.179 92.61 61.707 72.263 57.33 93.402 66.625 87 65 73 58 94 65 1 1 1 1 1 1 7660.4 16960 20 16757 25900 33476 33476 1 STDEVDSKR Unmodified 1035.4833 0.4832671 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 3 0 1 27.078 27.078 3 0.0059693 6181 TMT1-2 51.193 13.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16961 1546 16758 25901 33477 33477 1 STDHIEESVR Unmodified 1171.5469 0.54692999 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 4 0 1 28.963 28.963 3 0.016829 6008 TMT1-3 57.888 39.576 30.776 44.412 19.66 29.724 42.577 60.613 29 44 22 29 44 58 1 1 1 1 1 1 3069.3 16962 2707 16759 25902 33478 33478 1 STDTGVSLPSYEEDQGSK Acetyl (N-term) 1940.8487 0.84871048 2950 Q9Y241 HIGD1A HIG1 domain family member 1A, mitochondrial yes yes 1 0 0 0 0 2 0 1 58.553 58.553 3 0.00032354 18261 TMT1-1 54.288 42.674 53.642 87.149 107.82 103.77 68.73 83.319 51 87 109 102 73 80 2 2 2 2 2 2 20628 16963 2950 16760 25903 33479;33480 33479 2 STDYANFYQGLWDCTGAFSDELSFK Unmodified 2921.249 0.24904 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 7 0 1 89.957 89.957 4 3.4646E-08 29077 TMT1-6 77.19 63.174 46.586 57.627 56.43 59.128 48.004 76.448 44 58 58 58 51 73 1 1 1 1 1 1 9208.2 16964 289 16761 25904 33481 33481 1 STDYGIFQINSR Unmodified 1399.6732 0.67319314 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 6 2.58 1 1 1 1 1 1 57.933 57.933 2;3 4.3101E-56 17145 TMT1-5 240.41 189.07 862.96 2181.3 1351.8 1108.9 1202.9 1500.7 822 2126 1420 1109 1248 1440 6 6 6 6 6 6 831650 16965 1397 16762 25905;25906;25907;25908;25909;25910 33482;33483;33484;33485;33486;33487;33488 33484 7 STDYHGLLLPHIEGPEIK Unmodified 2018.0473 0.047291129 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 6 0 1 59.018 59.018 4 0.00014431 17702 TMT1-5 69.081 41.746 68.871 71.586 86.257 72.619 107.86 82.202 65 73 87 73 109 80 1 1 1 1 1 1 8910.9 16966 2596 16763 25911 33489 33489 1 STELLIR Unmodified 830.48617 0.48616764 1496;1525;2067 P68431;Q16695;Q6NXT2;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3C;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3C;Histone H3.3;Histone H3.2 no no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 45.684 45.684 2 5.8933E-08 12269 TMT1-5 173.85 64.145 33927 70700 35465 38600 51114 51744 32148 69155 38445 38129 52260 49909 11 11 11 11 11 11 5625000 16967 1496;1525;2067 16764 25912;25913;25914;25915;25916 33490;33491;33492;33493;33494;33495;33496;33497;33498;33499;33500 33496 11 STELPGKNESTIEQIDK Unmodified 1887.9426 0.94255129 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 1 5 0 1 49.383 49.383 3 5.3971E-18 13761 TMT1-4 108.41 72.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16968 1592 16765 25917 33501 33501 1 STESLQANVQR Unmodified 1231.6157 0.61567826 897 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 0 0 0 4 0 1 34.26 34.26 2 6.104E-07 8015 TMT1-3 147.78 115.64 85.016 70.625 78.608 73.765 71.172 52.335 80 73 80 73 73 51 1 1 1 1 1 1 23602 16969 897 16766 25918 33502 33502 1 STESYFIPEVR Unmodified 1326.6456 0.6455814 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4.5 0.5 1 1 56.837 56.837 2 1.0757E-11 16956 TMT1-3 172.98 135.79 261.51 337.95 306.08 222.55 272.76 410.09 247 339 312 225 284 392 3 3 3 3 3 3 106600 16970 740 16767 25919;25920 33503;33504;33505 33503 3 STEVEVLLPK Unmodified 1113.6281 0.62814043 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 5 0 1 59.345 59.345 2 2.406E-09 17600 TMT1-4 171.36 109.71 207.23 329.97 238.41 179.68 209.63 264.78 196 327 247 181 217 254 2 2 2 2 2 2 32122 16971 1222 16768 25921 33506;33507 33506 2 STFDAHIYEGR Unmodified 1294.5942 0.59421454 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 4 0 1 41.923 41.923 3 1.5657E-07 11064 TMT1-3 145.41 121.06 91.732 193.1 108.53 110.84 97.449 120.88 87 189 116 109 102 116 1 1 1 1 1 1 34462 16972 1596 16769 25922 33508 33508 1 STFFNVLTNSQASAENFPFCTIDPNESR Unmodified 3192.4458 0.44584232 2745 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 8 0 1 85.507 85.507 4 0.00045271 27459 TMT1-7 46.149 44.166 77.384 78.358 92.354 95.692 82.168 159.69 73 80 94 94 88 152 2 2 2 2 2 2 11622 16973 2745 16770 25923 33509;33510 33509 2 STFVLDEFK Unmodified 1084.5441 0.54407645 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 6 0 1 65.323 65.323 2 0.00021716 20187 TMT1-5 145.17 103.06 222.59 283.49 220.12 165.33 217.29 213.4 210 284 227 167 222 206 1 1 1 1 1 1 22531 16974 904 16771 25924 33511 33511 1 STFVLDEFKR Unmodified 1240.6452 0.64518747 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 1 7.5 0.5 1 1 56.232 56.232 3 5.2403E-05 16063 TMT1-7 132.32 102.39 1186.5 1837.9 1365.2 1137.4 1215.4 1618.7 1122 1824 1416 1136 1265 1551 3 3 3 3 3 3 220880 16975 904 16772 25925;25926 33512;33513;33514 33514 3 STGCDFAVSPK Unmodified 1167.523 0.52302343 1326 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 0 6 0 1 45.463 45.463 3 0.0008813 12352 TMT1-5 61.577 25.053 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16976 1326 16773 25927 33515 33515 1 STGDGTLGR Unmodified 862.41446 0.41445926 1924 Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 0 3 0 1 26.52 26.52 2 0.00017055 5956 TMT1-2 147.36 81.225 53.792 111.31 62.181 26.932 56.301 91.135 51 109 65 29 58 87 1 1 1 1 1 1 6438.5 16977 1924 16774 25928 33516 33516 1 STGDPQGVIR Unmodified 1028.5251 0.52507234 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 3.5 0.5 1 1 33.988 33.988 2 3.0113E-09 8941 TMT1-2 169.21 105.54 208.01 214.51 204.48 197.95 217.46 256.03 196 218 210 196 225 246 2 2 2 2 2 2 29983 16978 1601 16775 25929;25930 33517;33518 33517 2 STGEAFVQFASK Unmodified 1270.6194 0.61936665 982 P31942-2;P31942;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 0 7 0 1 57.682 57.682 3 0.00055778 16528 TMT1-6 83.617 58.4 108.2 153.1 79.774 103.92 149.57 135.38 102 152 87 102 152 131 1 1 1 1 1 1 20708 16979 982 16776 25931 33519 33519 1 STGEAFVQFASQEIAEK Unmodified 1840.8843 0.88430813 983;1325 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 0 5.25 0.433 3 1 73.141 73.141 2;3;4 2.1281E-13 23063 TMT1-4 125.29 104.06 376.74 613.34 361.54 366.58 458.72 528.44 356 606 385 363 472 508 5 5 5 5 5 5 132680 16980 983;1325 16777 25932;25933;25934;25935 33520;33521;33522;33523;33524 33523 5 STGFETLVVTSEDGITK Unmodified 1782.8887 0.8887248 284 O75521-2;O75521 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 0 0 0 0 0 5 0 1 67.924 67.924 3 0.0024536 21050 TMT1-4 56.121 36.282 46.917 58.548 0 46.607 78.944 75.565 44 58 0 44 80 73 1 1 0 1 1 1 6587.3 16981 284 16778 25936 33525 33525 1 STGGAPTFNVTVTK Unmodified 1378.7092 0.70924429 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 0 6.88 2.32 1 3 3 1 52.523 52.523 2;3 3.2809E-43 14545 TMT1-6 215.72 146.45 6870.5 10586 8874.6 6945 8831.4 11237 6502 10524 9107 6990 9117 10778 13 13 13 13 13 13 3512600 16982 540 16779 25937;25938;25939;25940;25941;25942;25943;25944 33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539 33531 14 STGGAPTFNVTVTKTDK Unmodified 1722.8788 0.87882882 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 1 8 0 1 48.629 48.629 3 5.1533E-18 13064 TMT1-7 108.94 79.209 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16983 540 16780 25945 33540 33540 1 STGNFLTLTQAIDK Unmodified 1507.7882 0.7882229 2829 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 68.3 68.3 3 0.024135 20853 TMT1-7 47.545 16.317 53.913 95.458 55.21 34.715 71.392 98.167 51 94 58 36 73 94 1 1 1 1 1 1 7682 16984 2829 16781 25946 33541 33541 1 STGSIVGQQPFGGAR Unmodified 1460.7372 0.73719038 943 P30038-2;P30038-3;P30038 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 46.443 46.443 3 7.0948E-08 12115 TMT1-6 87.083 57.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16985 943 16782 25947 33542 33542 1 STGSSQLTHK Unmodified 1044.52 0.51998696 2879 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 0 6 0 1 27.302 27.302 3 0.0015878 5252 TMT1-5 86.898 70.358 23.291 28.808 28.59 45.448 49.989 36.95 22 29 30 44 51 36 1 1 1 1 1 1 967.76 16986 2879 16783 25948 33543 33543 1 STGSWSTLK Unmodified 965.48181 0.48181054 402 P00751;P00751-2 CFB Complement factor B;Complement factor B Ba fragment;Complement factor B Bb fragment yes no 0 0 0 0 0 8 0 1 47.264 47.264 2 0.00060123 12544 TMT1-7 133.23 106.85 46.669 57.858 42.309 35.75 57.215 52.733 44 58 44 36 58 51 1 1 1 1 1 1 7272.6 16987 402 16784 25949 33544 33544 1 STGTFVVSQPLNYR Acetyl (Protein N-term) 1609.81 0.81002097 1171 P49189 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 0 1 0 0 0 4 0 1 64.244 64.244 2 5.3527E-07 19888 TMT1-3 44.598 15.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16988 1171 16785 25950 33545 33545 1 STHQAAIVSK Unmodified 1040.5615 0.56145784 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 7.5 1.12 1 1 1 1 30.512 30.512 3 0.00013597 6394 TMT1-5 109.39 70.755 404.98 456.78 256.72 279.86 287.92 622.86 381 459 276 275 308 592 5 5 5 5 5 5 46371 16989 1597 16786 25951;25952;25953;25954 33546;33547;33548;33549;33550 33546 5 STHQCWK Unmodified 945.41269 0.41268512 2633 Q9H2U2;Q9H2U2-2;Q9H2U2-3;Q9H2U2-6;Q9H2U2-4 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 29.723 29.723 3 0.016693 4848 TMT1-8 60.358 37.132 15.919 17.838 14.402 15.208 17.488 18.689 15 18 15 15 18 18 1 1 1 1 1 1 511.38 16990 2633 16787 25955 33551 33551 1 STIGVEFATR Unmodified 1079.5611 0.56112349 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 6.5 0.5 1 1 48.78 48.78 2 2.6439E-05 13558 TMT1-5 150.66 94.005 552.52 734.96 651.44 451.68 594.21 733.51 522 736 664 459 612 704 3 3 3 3 3 3 128390 16991 1880 16788 25956;25957 33552;33553;33554 33552 3 STIIGESISR Unmodified 1061.5717 0.57168818 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 44.698 44.698 2 0.0066342 11910 TMT1-4 59.597 2.5644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16992 1296 16789 25958 33555 33555 1 STIVSIFK Unmodified 893.52222 0.52221879 2427 Q96JJ7 TMX3 Protein disulfide-isomerase TMX3 yes yes 0 0 0 0 0 9 0 1 63.347 63.347 2 0.030001 17031 TMT1-8 71.379 26.067 115.37 175.39 117.81 93.647 110.22 198.33 109 174 123 94 116 189 1 1 1 1 1 1 9030.7 16993 2427 16790 25959 33556 33556 1 STLEPVEK Unmodified 901.47566 0.47566253 618;754 P17066;P48741;P0DMV8;P0DMV9;P0DMV8-2 HSPA6;HSPA7;HSPA1A;HSPA1B Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 3.5 0.5 1 1 42.454 42.454 2;3 0.0013407 11271 TMT1-3 103.83 58.521 381.18 447.42 657.68 499.71 577.98 624.17 361 455 655 503 595 601 3 3 3 3 3 3 58850 16994 754;618 16791 25960;25961 33557;33558;33559 33559 3 STLINSLFLTDLYPER Unmodified 1880.9884 0.98837927 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 8.5 0.5 1 1 84.24 84.24 3 6.8626E-20 27065 TMT1-7 155.1 138.96 100.1 191.9 146.48 133.91 136.95 158.12 95 189 152 131 142 152 4 4 4 3 4 4 73629 16995 1812 16792 25962;25963 33560;33561;33562;33563 33561 4 STLINSLFLTDLYSPEYPGPSHR Unmodified 2606.3017 0.30166791 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 8.5 0.5 1 1 78.319 78.319 3;4 5.3455E-10 22803 TMT1-8 80.702 64.58 223.95 363.18 284.76 379.76 234.14 441.04 212 360 300 367 255 420 2 2 2 2 2 2 32736 16996 1883 16793 25964;25965 33564;33565;33566 33566 3 STLINSLFLTNLYEDR Unmodified 1897.9785 0.97854286 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 8.5 0.5 1 1 82.943 82.943 3 1.7002E-18 26486 TMT1-7 149.99 125.8 62.68 56.525 57.453 35.808 64.285 59.994 59 58 58 37 65 58 2 2 2 2 2 2 15675 16997 2288 16794 25966;25967 33567;33568;33569 33567 3 STLINTLFK Unmodified 1035.5964 0.59644637 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 9 0 1 68.513 68.513 2 4.3337E-10 19055 TMT1-8 180.8 94.713 497.12 832.67 503.26 495.34 660.68 688.97 470 822 534 492 676 664 3 3 3 3 3 3 48690 16998 2864 16795 25968 33570;33571;33572 33570 3 STLISWTK Unmodified 934.51238 0.51238239 1275 P52790 HK3 Hexokinase-3 yes yes 0 0 0 0 0 9 0 1 58.493 58.493 2 0.0072564 15108 TMT1-8 107.01 80.315 130.14 181.21 155.39 139.12 130.65 212.67 123 181 160 138 138 203 1 1 1 1 1 1 14894 16999 1275 16796 25969 33573 33573 1 STLITDGSTPINLFNTAFGLLGMGPEGQPLGR Unmodified 3273.6704 0.67036295 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 9 0 1 103.25 103.25 3 1.5968E-28 32232 TMT1-8 106.81 94.004 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17000 1796 16797 25970 33574 33574 1 STLLADDLEIK Unmodified 1216.6551 0.65508346 1007 P34910;P34910-2 EVI2B Protein EVI2B yes no 0 0 0 0 0 4.5 0.5 1 1 64.642 64.642 2 1.206E-22 19732 TMT1-4 166.97 105.32 54.386 34.173 27.758 29.083 50.998 29.459 51 36 29 29 51 29 1 1 1 1 1 1 3819.6 17001 1007 16798 25971;25972 33575;33576 33576 2 STLLELFGQIER Unmodified 1404.7613 0.76127986 2966 Q9Y2I8-2;Q9Y2I8;Q9Y2I8-3 WDR37 WD repeat-containing protein 37 yes no 0 0 0 0 0 8 0 1 81.537 81.537 2 5.0092E-09 25966 TMT1-7 122.18 76.049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17002 2966 16799 25973 33577 33577 1 STLLFGQR Unmodified 920.50797 0.50796571 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 9 0 1 49.922 49.922 2 0.012705 11762 TMT1-8 85.064 56.957 77.384 85.911 86.077 56.389 99.696 128.27 73 87 87 58 102 123 1 1 1 1 1 1 9409.1 17003 998 16800 25974 33578 33578 1 STLLLLLTGK Unmodified 1057.6747 0.67469669 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 9 0 1 81.835 81.835 2 0.0015994 24241 TMT1-8 104.05 69.3 100.38 137.65 144.41 107.7 150.44 135.35 95 138 146 109 153 131 2 2 2 2 2 2 10086 17004 2219 16801 25975 33579;33580 33579 2 STLMDTLFNTK Unmodified 1269.6275 0.6274885 1752;2757 Q14141-2;Q14141-4;Q14141;Q14141-3;Q9NVA2 SEPT6;SEPT11 Septin-6;Septin-11 no no 0 0 0 0 0 8.5 0.5 1 1 71.498 71.498 2;3 1.4425E-07 22118 TMT1-7 146.17 112.95 277.22 290.27 230.39 235.14 249.93 357.44 261 294 240 232 261 342 3 3 3 3 3 3 47037 17005 1752;2757 16802 25976;25977 33581;33582;33583 33582 3 STLNEIYFGK Unmodified 1170.5921 0.59208927 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 0 7.33 0.471 2 1 60.309 60.309 2;3 2.2671E-09 17638 TMT1-6 171.85 127.28 663.9 910.38 719.88 731.12 862.28 899.62 627 909 749 723 886 867 3 3 3 3 3 3 526800 17006 1144;1145 16803 25978;25979;25980 33584;33585;33586 33585 3 STLNELVDYITISR Unmodified 1622.8516 0.85155143 1889 Q16537-3;Q16537-2;Q16537 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes no 0 0 0 0 0 7 0 1 79.589 79.589 3 1.0708E-05 25138 TMT1-6 98.694 81.78 23.321 21.338 29.737 5.4653 21.977 22.825 22 22 29 7 22 22 1 1 1 1 1 1 3897.1 17007 1889 16804 25981 33587 33587 1 STLNPQWNESFTFK Unmodified 1697.8049 0.80493559 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 0 8 0 1 66.293 66.293 2 1.0442E-09 20007 TMT1-7 122.39 101.61 30.376 50.853 81.491 41.864 72.896 44.824 29 51 80 44 73 44 1 1 1 1 1 1 10186 17008 757 16805 25982 33588 33588 1 STLPDADRER Unmodified 1158.5629 0.56291441 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 2 0.816 1 1 1 27.719 27.719 3 6.2438E-06 6173 TMT1-1 152.17 142.74 584.66 635.3 563.87 507.84 617.51 680.61 551 643 580 506 635 655 4 4 4 4 4 4 74394 17009 195 16806 25983;25984;25985 33589;33590;33591;33592 33590 4 STLQDSDEYSNPAPLPLDQHSR Unmodified 2469.1408 0.14081018 233 O60711;O60711-2 LPXN Leupaxin yes no 0 0 0 0 0 3 0 1 50.507 50.507 3 2.6015E-17 15487 TMT1-2 104.42 91.614 23.415 21.598 13.799 22.83 20.922 30.317 22 22 15 22 22 29 1 1 1 1 1 1 8576 17010 233 16807 25986 33593 33593 1 STLQTMESDIYTEVR Unmodified 1771.8298 0.82982971 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 3 0 1 65.916 65.916 3 1.0248E-07 21509 TMT1-2 83.54 80.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17011 1609 16808 25987 33594 33594 1 STLTDSLVCK Unmodified 1122.5591 0.55907458 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6.33 0.471 2 1 52.709 52.709 2;3 1.5338E-14 15196 TMT1-5 189.38 120.46 406.89 681.91 466.11 449.5 484.15 682.28 385 674 489 445 505 653 3 3 3 3 3 3 100090 17012 685 16809 25988;25989;25990 33595;33596;33597;33598 33595 4 STLVHSLFLTDLYKDR Unmodified 1907.0153 0.015262719 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 1 9 0 1 62.953 62.953 4 9.1497E-06 16889 TMT1-8 85.77 58.445 68.526 117.04 105.63 110.89 103.97 144.14 65 116 109 109 109 138 1 1 1 1 1 1 7842.7 17013 2486 16810 25991 33599 33599 1 STMKPVQK Unmodified 917.50044 0.50043749 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 8.5 0.5 1 1 34.506 34.506 3 0.032215 7426 TMT1-7 64.485 35.323 338.17 395.78 356.22 297.6 365.99 488.44 319 399 365 298 379 468 2 2 2 2 2 2 33331 17014 640 16811 25992;25993 33600;33601 33600 2 STNCFGDNDPIDVCEIGSK Unmodified 2126.8885 0.88848358 2633 Q9H2U2;Q9H2U2-2 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 0 0 0 0 0 4 0 1 61.438 61.438 3 5.4852E-10 18804 TMT1-3 99.963 85.034 92.151 131.66 90.131 72.117 122.28 89.253 87 131 94 73 123 87 1 1 1 1 1 1 18207 17015 2633 16812 25994 33602 33602 1 STNDADVPQGVIR Unmodified 1370.679 0.6790068 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 2.5 0.5 1 1 42.3 42.3 2;3 5.7921E-16 12133 TMT1-2 171.49 156.55 99.921 76.827 93.016 104.62 128.61 105.06 94 80 95 103 131 102 2 2 2 2 2 2 18677 17016 2172 16813 25995;25996 33603;33604 33604 2 STNIAAAASEPHS Unmodified 1254.584 0.58404378 2096 Q7Z4H3-2;Q7Z4H3 HDDC2 HD domain-containing protein 2 yes no 0 0 0 0 0 3 0 1 36.511 36.511 2 0.00044509 9923 TMT1-2 72.096 54.037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17017 2096 16814 25997 33605 33605 1 STNINFYEISSDGNVPSIVHSFEDVGPK Unmodified 3051.4462 0.4461599 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 6 0 1 75.782 75.782 4 1.3251E-05 24269 TMT1-5 56.533 43.441 46.594 73.839 41.349 35.788 58.276 21.789 44 73 44 36 58 22 1 1 1 1 1 1 7078.1 17018 758 16815 25998 33606 33606 1 STPAAVGAMEDK Unmodified 1175.5492 0.54923818 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 4 0 1 44.891 44.891 2 5.1982E-07 12279 TMT1-3 121.68 79.696 38.058 74.56 32.661 36.489 48.532 91.357 36 73 36 36 51 87 1 1 1 1 1 1 8182 17019 2857 16816 25999 33607 33607 1 STPAITLESPDIK Unmodified 1370.7293 0.72931103 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 5 0 2 57.318 57.318 2;4 7.1486E-16 16823 TMT1-4 169.52 103.25 176.88 239.26 185.83 222.56 246.46 231.75 167 239 195 218 253 224 2 2 2 2 2 2 56488 17020 388 16817 26000;26001 33608;33609 33608 2 STPAITLESPDIKYPLR Unmodified 1900.0306 0.030578432 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 1 7 0 2 60.688 60.688 3;4 1.8684E-09 17716 TMT1-6 105.17 88.093 407.48 536.76 490.14 421.27 514.3 664.37 385 538 502 421 532 637 3 3 3 3 3 3 92018 17021 388 16818 26002;26003 33610;33611;33612 33610 3 STPEYFAER Unmodified 1098.4982 0.49818889 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 3.5 0.5 1 1 41.743 41.743 2 0.00012351 11996 TMT1-2 149.57 103.18 615.76 857.78 559.54 641.98 647.09 888.7 581 854 594 629 676 851 3 3 3 3 3 3 194040 17022 555 16819 26004;26005 33613;33614;33615 33613 3 STPLLIHCR Unmodified 1095.5859 0.58589846 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 8.5 0.5 1 1 37.257 37.257 3 0.002161 7268 TMT1-8 86.67 65.723 112.21 171.44 112.24 78.683 109.91 105.6 106 170 117 80 112 102 2 2 2 2 2 2 25592 17023 570 16820 26006;26007 33616;33617 33617 2 STPVNVPISQK Unmodified 1168.6452 0.64518747 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 7 0 1 46.806 46.806 3 8.8439E-05 12243 TMT1-6 103.44 60.439 245.49 278.82 343.11 201.4 175.94 303.05 232 283 342 206 187 289 1 1 1 1 1 1 40991 17024 2267 16821 26008 33618 33618 1 STQFEYAWCLVR Unmodified 1558.7238 0.7238485 2996 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 0 7.5 0.5 1 1 67.541 67.541 2;3 7.1454E-06 20482 TMT1-7 91.093 77.957 23.122 35.892 50.995 43.037 49.037 67.891 22 36 51 43 51 65 1 1 1 1 1 1 8857.5 17025 2996 16822 26009;26010 33619;33620 33620 2 STQGVTLTDLQEAEK Unmodified 1618.805 0.80499517 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 4 0 1 55.136 55.136 3 3.4422E-17 16298 TMT1-3 143.97 105.97 68.961 110.69 37.941 60.123 53.675 123.19 65 109 44 58 58 117 1 1 1 1 1 1 10036 17026 118 16823 26011 33621 33621 1 STQYQELLQDLSEK Unmodified 1680.8206 0.82064524 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 5 0 1 71.812 71.812 3 2.4247E-08 22530 TMT1-4 115.91 97.497 69.277 41.417 43.52 28.154 50.491 45.463 65 44 44 29 51 44 1 1 1 1 1 1 6016 17027 2935 16824 26012 33622 33622 1 STSEGLLGDLDTEISWAK Unmodified 1920.9317 0.93165225 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 5 0 1 79.308 79.308 3 1.364E-14 25497 TMT1-4 100.04 82.553 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17028 1138 16825 26013 33623 33623 1 STSESTAALGCLVK Unmodified 1422.7024 0.70244436 421 P01859 IGHG2 Ig gamma-2 chain C region no no 0 0 0 0 0 6 0 1 54.249 54.249 3 1.5368E-10 15810 TMT1-5 124.12 111.49 239.51 347.63 388.5 280.58 296.78 455.24 227 348 391 283 311 435 2 2 2 2 2 2 35649 17029 421 16826 26014 33624;33625 33624 2 STSFNVQDLLPDHEYK Unmodified 1891.8952 0.89520716 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5.5 0.5 1 1 63.544 63.544 3 6.4453E-12 19404 TMT1-5 125.52 114.74 223.25 257.43 312.09 200.29 217.06 264.57 211 261 312 204 225 254 3 3 3 3 3 3 43128 17030 1870 16827 26015;26016 33626;33627;33628 33627 3 STSGGTAALGCLVK Unmodified 1320.6708 0.6707503 420;422 P0DOX5;P01857;P01860 IGHG1;IGHG3 Ig gamma-1 chain C region;Ig gamma-3 chain C region no no 0 0 0 0 0 5 2.83 1 2 53.24 53.24 3 2.6672E-13 14451 TMT1-6 119.39 87.377 26.495 45.815 16.634 47.665 28.12 31.178 25 45 20 45 30 30 1 1 1 1 1 1 2736.4 17031 420;422 16828 26017;26018;26019 33629;33630;33631 33630 3 STSIQSFK Unmodified 896.46035 0.46034682 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 7 0 1 44.921 44.921 2 0.014175 11509 TMT1-6 94.309 74.523 108.33 83.316 116.5 77.763 145.31 81.133 102 87 116 80 145 80 1 1 1 1 1 1 8040.3 17032 691 16829 26020 33632 33632 1 STSLPSR Unmodified 746.39227 0.39226725 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6 0 1 28.635 28.635 2 0.026964 5722 TMT1-5 92.187 41.289 38.09 58.46 40.906 67.405 63.895 29.091 36 58 44 65 65 29 1 1 1 1 1 1 3411.7 17033 772 16830 26021 33633 33633 1 STSLSIEEER Unmodified 1149.5513 0.55134667 2946 Q9Y210-3;Q9Y210;Q9Y210-2 TRPC6 Short transient receptor potential channel 6 yes no 0 0 0 0 0 2 0 1 39.94 39.94 2 0.030704 10855 TMT1-1 70.389 30.726 38.258 43.817 25.109 77.385 48.228 45.528 36 44 29 73 51 44 1 1 1 1 1 1 81476 17034 2946 16831 26022 33634 33634 1 STSQGFCFNILCVGETGIGK Unmodified 2174.0136 0.013624514 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 8 0 1 76.963 76.963 3 2.4595E-05 24185 TMT1-7 71.174 55.051 77.417 78.448 86.843 49.252 69.933 90.746 73 80 87 51 72 87 2 2 2 2 2 2 14300 17035 2757 16832 26023 33635;33636 33635 2 STSVFAR Unmodified 766.39735 0.39735263 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7 0 1 35.636 35.636 2 0.010195 7831 TMT1-6 109.11 70.289 84.612 115.91 108.1 55.055 100.82 97.327 80 116 109 58 102 94 1 1 1 1 1 1 11278 17036 471 16833 26024 33637 33637 1 STTELGENLQELR Unmodified 1488.742 0.74200098 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 2.5 0.5 1 1 52.84 52.84 2;3 0.00038132 16084 TMT1-1 95.618 77.282 30.804 28.302 28.547 21.945 21.219 22.846 29 29 29 22 22 22 1 1 1 1 1 1 3189.3 17037 1138 16834 26025;26026 33638;33639 33638 2 STTGPFDREHLLSYLEK Unmodified 1991.9953 0.99525556 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 8 0 1 61.165 61.165 4 0.00034462 18014 TMT1-7 71.697 53.284 77.04 140 97.998 80.311 68.489 121.7 73 138 102 80 73 116 1 1 1 1 1 1 9929.3 17038 2788 16835 26027 33640 33640 1 STTPDITGYR Unmodified 1109.5353 0.53530267 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 4 0 1 40.871 40.871 2 0.00024874 10661 TMT1-3 126.82 96.138 77.074 123.9 105.89 94.741 89.813 121.09 73 123 109 94 94 116 1 1 1 1 1 1 17010 17039 442 16836 26028 33641 33641 1 STTQVADSGYQR Unmodified 1311.6055 0.6055075 2359 Q96A65;Q96A65-2 EXOC4 Exocyst complex component 4 yes no 0 0 0 0 0 3 0 1 30.845 30.845 3 0.0048546 7712 TMT1-2 65.234 51.655 85.114 70.897 61.975 82.43 69.968 75.821 80 73 65 80 73 73 1 1 1 1 1 1 3670.3 17040 2359 16837 26029 33642 33642 1 STTTGHLIYK Unmodified 1119.5924 0.59242362 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 8 0.816 1 1 1 38.282 38.282 3 2.4603E-07 7463 TMT1-8 150.1 98.575 1168 1610.4 1235.3 1107.9 1630 1585.5 1103 1607 1282 1109 1659 1531 3 3 3 3 3 3 176480 17041 1490 16838 26030;26031;26032 33643;33644;33645;33646 33645 4 STTVNVDSLAEYEK Acetyl (Protein N-term) 1596.7519 0.75189697 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 1 0 0 0 2 0 1 66.729 66.729 2 1.4482E-10 21363 TMT1-1 77.593 51.655 15.859 21.986 21.066 30.059 20.333 37.796 15 22 22 29 22 36 1 1 1 1 1 1 3382.8 17042 750 16839 26033 33647 33647 1 STVAQLVK Unmodified 844.50182 0.5018177 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 8 0 1 47.354 47.354 3 0.005948 12523 TMT1-7 81.296 32.793 138.22 240.74 189.79 160.26 175.88 238.03 131 238 196 160 183 228 1 1 1 1 1 1 25046 17043 888 16840 26034 33648 33648 1 STVEGIQASVK Unmodified 1117.5979 0.59790293 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4.57 2.44 2 2 2 1 45.711 45.711 2;3 9.4561E-32 12280 TMT1-4 210.08 145.51 3517.6 4487.2 4253.3 3347.2 4223.7 4812.9 3323 4507 4334 3367 4343 4628 6 6 6 6 6 6 1533100 17044 776 16841 26035;26036;26037;26038;26039;26040;26041 33649;33650;33651;33652;33653;33654;33655;33656 33651 8 STVHEILCK Acetyl (N-term) 1127.5645 0.56449431 534 P07355;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 1 0 0 0 0 5.33 1.25 1 1 1 49.471 49.471 2 0.0021215 13782 TMT1-4 54.157 30.6 743.42 1430.4 799.15 768.26 960.95 1235.8 704 1404 853 763 993 1185 5 5 5 5 5 5 232920 17045 534 16842 26042;26043;26044 33657;33658;33659;33660;33661 33659 5 STVLSLDWHPNNVLLAAGSCDFK Unmodified 2543.2479 0.2478582 128;2314 O15143;Q92747;Q92747-2 ARPC1B;ARPC1A Actin-related protein 2/3 complex subunit 1B;Actin-related protein 2/3 complex subunit 1A no no 0 0 0 0 0 8.5 0.5 1 1 74.163 74.163 4 3.9827E-18 23117 TMT1-7 113.26 90.886 265.3 456.06 290.05 252.66 349.75 412.16 251 450 305 253 359 396 3 3 3 3 3 3 65136 17046 128;2314 16843 26045;26046 33662;33663;33664 33662 3 STVLTIPEIIIK Unmodified 1325.817 0.81700383 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 6.86 2.47 1 2 3 1 76.925 76.925 2;3 8.373E-09 23992 TMT1-6 131.83 107.48 3492.1 4096 4015.1 2860.4 3663.3 4240.5 3296 4134 4072 2899 3767 4076 10 10 10 10 10 10 1244200 17047 393 16844 26047;26048;26049;26050;26051;26052;26053 33665;33666;33667;33668;33669;33670;33671;33672;33673;33674 33666 10 STVLTIPEIIIKVR Unmodified 1580.9865 0.98652877 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 1 9 0 1 71.914 71.914 3 0.0001123 20442 TMT1-8 75.012 58.874 54.216 42.335 49.369 67.345 40.297 76.668 51 44 51 65 44 73 1 1 1 1 1 1 4142.9 17048 393 16845 26054 33675 33675 1 STVPGHAGR Unmodified 880.45151 0.45151346 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 5.8 2.79 1 1 1 1 1 18.846 18.846 3 0.0036428 3442 TMT1-4 78.516 43.692 22.158 30.873 36.923 25.748 24.939 31.268 21 31 37 26 26 30 7 7 7 7 7 7 4350.2 17049 394 16846 26055;26056;26057;26058;26059 33676;33677;33678;33679;33680;33681;33682 33678 7 STVPTDFSSAK Unmodified 1138.5506 0.55061839 1625 Q08722-3;Q08722-4;Q08722;Q08722-2 CD47 Leukocyte surface antigen CD47 yes no 0 0 0 0 0 6 0 1 46.559 46.559 2 5.1402E-12 12779 TMT1-5 176.6 126.79 489.81 524.72 369.02 353.85 414.74 485.99 461 530 387 351 428 467 1 1 1 1 1 1 77839 17050 1625 16847 26060 33683 33683 1 STYGVTK Unmodified 754.38612 0.38611924 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 6 0 1 36.722 36.722 2 0.021743 8853 TMT1-5 96.253 58.015 175.45 470.58 229.3 198.34 292.53 354.09 167 457 247 199 300 340 1 1 1 1 1 1 25850 17051 1915 16848 26061 33684 33684 1 STYNHLSSWLTDAR Unmodified 1649.7798 0.77978347 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 7 0 1 52.965 52.965 3 8.9212E-06 14693 TMT1-6 99.668 98.105 253.87 224.62 241.95 212.53 253.38 226.22 239 231 246 212 259 219 1 1 1 1 1 1 37869 17052 1378 16849 26062 33685 33685 1 STYTSYPK Unmodified 945.44436 0.4443624 116 O14964-2;O14964 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 0 6 0 1 38.761 38.761 2 0.0056167 9686 TMT1-5 116.37 64.584 69.247 48.887 42.337 44.643 49.22 60.423 65 51 44 44 51 58 1 1 1 1 1 1 5245.2 17053 116 16850 26063 33686 33686 1 SVACDVGYPALK Unmodified 1278.6278 0.62782285 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 6 0 1 53.787 53.787 3 0.0030226 15624 TMT1-5 69.451 44.234 76.989 92.369 146.87 91.745 119.25 151.17 73 94 145 94 123 145 1 1 1 1 1 1 12542 17054 758 16851 26064 33687 33687 1 SVACDVGYPALKR Unmodified 1434.7289 0.72893388 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 1 7 0 1 46.151 46.151 3 0.014747 11989 TMT1-6 57.034 28.27 161.53 172.29 116.72 117.02 149.52 119.39 152 174 123 116 152 116 1 1 1 1 1 1 13916 17055 758 16852 26065 33688 33688 1 SVADSVLFLR Unmodified 1105.6132 0.61315906 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 7 0 1 64.84 64.84 2 7.4732E-07 19393 TMT1-6 164.71 102 335.62 711.38 517.9 469.6 471.79 588.83 319 698 539 466 491 565 1 1 1 1 1 1 96976 17056 876 16853 26066 33689 33689 1 SVAGGFVYTYK Unmodified 1190.5972 0.59717465 1850 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 8 0 1 56.329 56.329 2 1.1127E-06 16134 TMT1-7 141.88 96.511 61.425 94.946 55.538 27.195 63.362 98.396 58 94 58 29 65 94 1 1 1 1 1 1 11753 17057 1850 16854 26067 33690 33690 1 SVAHLFIDETSSEVLDELYR Unmodified 2322.138 0.13795663 2034 Q6P589 TNFAIP8L2 Tumor necrosis factor alpha-induced protein 8-like protein 2 yes yes 0 0 0 0 0 5 0 2 78.392 78.392 3 0.00010793 25088 TMT1-4 55.127 51.839 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17058 2034 16855 26068;26069 33691;33692 33691 2 SVALCVAACPR Unmodified 1202.59 0.58999756 2278 Q8WWI5-3;Q8WWI5-2;Q8WWI5 SLC44A1 Choline transporter-like protein 1 yes no 0 0 0 0 0 7 0 1 46.137 46.137 2 2.6813E-07 11994 TMT1-6 109.44 93.777 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17059 2278 16856 26070 33693 33693 1 SVAQQASLTEQR Unmodified 1316.6684 0.66844211 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 4 0 1 35.364 35.364 2 5.811E-12 8483 TMT1-3 138.63 86.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17060 1264 16857 26071 33694 33694 1 SVAQYTGGIAK Unmodified 1093.5768 0.57677356 1639 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 0 0 7 0 1 48.18 48.18 3 0.0027327 12632 TMT1-6 75.819 46.012 77.138 132.72 87.712 126.7 133.35 150.76 73 131 94 123 138 145 1 1 1 1 1 1 40674 17061 1639 16858 26072 33695 33695 1 SVDCFLHDFASK Unmodified 1424.6395 0.63945017 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 7 0 1 63.785 63.785 3 4.9485E-08 18976 TMT1-6 126.1 95.663 77.274 101.8 90.963 95.352 104.68 144.12 73 102 94 94 109 138 1 1 1 1 1 1 9037.1 17062 48 16859 26073 33696 33696 1 SVDEALR Unmodified 788.40283 0.40283194 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 0 2.5 0.5 1 1 35.955 35.955 2 0.0012853 9446 TMT1-1 148.21 57.267 682.71 800.64 716.2 692.32 553.96 761.31 644 807 738 682 585 729 2 2 2 2 2 2 98534 17063 989 16860 26074;26075 33697;33698 33697 2 SVDETLR Unmodified 818.4134 0.41339662 1606;1679 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 0 0 2 0.816 1 1 1 34.608 34.608 2 0.0004768 8878 TMT1-1 152.63 72.34 488.66 1326.7 964.1 804.43 1188 1215.5 467 1293 1000 809 1211 1172 3 3 3 3 3 3 184710 17064 1606;1679 16861 26076;26077;26078 33699;33700;33701 33700 3 SVDEVFDEVVQIFDK Unmodified 1767.8567 0.85669639 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 0 5 0 1 99.905 99.905 3 7.2284E-08 32905 TMT1-4 110.77 84.651 23.384 20.433 19.987 31.229 19.635 26.09 22 21 21 30 21 25 2 2 2 2 2 2 3018.3 17065 953 16862 26079 33702;33703 33702 2 SVDEVFDEVVQIFDKEG Unmodified 1953.9208 0.92075321 953 P30085-3;P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 0 0 1 5.33 0.471 2 1 101.28 101.28 3;4 9.4927E-10 33189 TMT1-4 110.97 89.703 79.599 95.671 66.113 91.755 84.071 109.53 75 96 69 89 88 105 6 6 5 6 6 6 15784 17066 953 16863 26080;26081;26082 33704;33705;33706;33707;33708;33709 33705 6 SVDFDSLTVR Unmodified 1137.5666 0.5666028 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 5 0 1 57.123 57.123 2 0.0022821 16784 TMT1-4 99.855 63.644 100.04 100.89 53.244 66.316 82.728 152.21 94 102 58 65 87 145 1 1 1 1 1 1 9431.6 17067 3029 16864 26083 33710 33710 1 SVDIINMLLNFEIK Unmodified 1647.8906 0.89057948 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 1 99.919 99.919 3 0.0020296 31025 TMT1-8 57.328 31.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17068 2064 16865 26084 33711 33711 1 SVDIPENR Unmodified 928.46141 0.46140945 1921 Q2TAA2;Q2TAA2-2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes no 0 0 0 0 0 2 0 1 37.619 37.619 2 0.029106 10026 TMT1-1 82.426 27.814 53.894 80.293 71.339 57.411 92.043 106.11 51 80 73 58 94 102 1 1 1 1 1 1 5264 17069 1921 16866 26085 33712 33712 1 SVDLVIQELINTVK Unmodified 1569.8978 0.89777334 2942 Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM3 Dynamin-3 yes no 0 0 0 0 0 8 0 1 95.772 95.772 3 1.6695E-05 31275 TMT1-7 95.428 70.251 7.2959 6.4429 30.695 5.8216 0 23.452 7 7 29 7 0 22 1 1 1 1 0 1 1732 17070 2942 16867 26086 33713 33713 1 SVDPDSPAEASGLR Unmodified 1399.6579 0.657937 104 O14745;O14745-2 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 0 0 0 0 0 2.33 0.471 2 1 42.708 42.708 2;3 5.1588E-34 12133 TMT1-1 199.21 154.05 155.39 127.15 104.94 102.84 127.12 150.94 146 131 109 102 131 145 3 3 3 3 3 3 54135 17071 104 16868 26087;26088;26089 33714;33715;33716 33715 3 SVDPENNPTLVEVLEGVVR Unmodified 2065.0691 0.069148783 3031 Q9Y5L0-3;Q9Y5L0;Q9Y5L0-5 TNPO3 Transportin-3 yes no 0 0 0 0 0 4 0 1 82.842 82.842 3 0.00053194 27119 TMT1-3 48.824 35.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17072 3031 16869 26090 33717 33717 1 SVDPTLALSVYLR Unmodified 1432.7926 0.79257999 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7.5 0.5 1 1 74.58 74.58 2;3 6.1398E-07 23225 TMT1-6 116.84 79.725 76.39 78.65 78.894 57.512 62.721 106.94 72 80 80 58 66 102 2 2 2 2 2 2 28551 17073 1540 16870 26091;26092 33718;33719 33718 2 SVDSFLQADGPEER Unmodified 1548.7056 0.70561548 1167 P48764-2;P48764 SLC9A3 Sodium/hydrogen exchanger 3 yes no 0 0 0 0 0 2 0 1 40.978 40.978 2 0.0015542 11326 TMT1-1 78.136 27.332 46.638 65.328 41.113 52.532 40.465 91.587 44 65 44 51 44 87 1 1 1 1 1 1 18397 17074 1167 16871 26093 33720 33720 1 SVEAAAELSAK Unmodified 1074.5557 0.55570376 823 P20962 PTMS Parathymosin yes yes 0 0 0 0 0 5 0 1 47.842 47.842 2 1.8734E-06 13162 TMT1-4 136.02 111.99 37.765 88.854 69.825 81.691 84.403 82.872 36 87 73 80 87 80 1 1 1 1 1 1 6579.6 17075 823 16872 26094 33721 33721 1 SVEAILEESTEK Unmodified 1333.6613 0.66129105 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 4 0 1 64.16 64.16 3 0.013029 19853 TMT1-3 55.604 41.924 68.593 109.67 100.59 63.875 62.444 76.036 65 109 102 65 65 73 1 1 1 1 1 1 7359.2 17076 2430 16873 26095 33722 33722 1 SVEELLEAELLK Unmodified 1371.7497 0.74971212 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 4.67 0.471 1 2 82.515 82.515 2;3 0.00014635 26707 TMT1-4 95.401 73.355 84.3 154.98 127.5 125.83 111.67 113.01 80 153 132 124 116 109 3 3 3 3 3 3 14619 17077 2109 16874 26096;26097;26098 33723;33724;33725 33725 3 SVEETLR Unmodified 832.42905 0.42904669 949 P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 0 2 0 1 35.438 35.438 2 0.0083627 9119 TMT1-1 116.88 38.268 276.76 519.07 293.41 309.84 262.8 461.54 262 510 314 304 280 440 1 1 1 1 1 1 90520 17078 949 16875 26099 33726 33726 1 SVELEDVK Unmodified 917.47058 0.47057715 2569 Q9BXS5;Q9BXS5-2;Q9Y6Q5;Q9Y6Q5-2 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 yes no 0 0 0 0 0 2.5 0.5 1 1 48.838 48.838 2 0.0059572 14516 TMT1-1 111.74 54.692 239.02 243.38 198.23 150.29 214.42 195.36 225 247 204 152 218 189 2 2 2 2 2 2 18492 17079 2569 16876 26100;26101 33727;33728 33727 2 SVELEEALPVTTAEGMAK Acetyl (Protein N-term) 1915.9449 0.94485947 2295 Q92522 H1FX Histone H1x yes yes 0 1 0 0 0 2 0 1 79.128 79.128 3 6.8168E-08 25963 TMT1-1 40.085 26.406 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17080 2295 16877 26102 33729 33729 1 SVENFVNLVK Unmodified 1147.6237 0.62372375 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 8 0 1 66.265 66.265 2 2.7571E-06 20030 TMT1-7 157.66 105.18 61.464 87.5 55.267 43.305 79.389 67.025 58 87 58 44 80 65 1 1 1 1 1 1 10901 17081 2305 16878 26103 33730 33730 1 SVEQPIVLK Unmodified 1011.5964 0.59644637 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 6 0 1 52.136 52.136 2 0.0019967 15015 TMT1-5 108.57 86.422 54.234 49.94 39.924 99.091 67.626 121.73 51 51 44 94 73 116 1 1 1 1 1 1 10309 17082 1786 16879 26104 33731 33731 1 SVEQQVIGFSGLSDDKNYK Unmodified 2113.0328 0.032763277 2902 Q9UL15;Q9UL15-2 BAG5 BAG family molecular chaperone regulator 5 yes no 0 0 0 0 1 6 0 1 60.793 60.793 4 0.00047276 18387 TMT1-5 60.564 38.949 77.121 132.67 90.512 63.915 92.293 90.108 73 131 94 65 94 87 1 1 1 1 1 1 4746 17083 2902 16880 26105 33732 33732 1 SVESVPK Unmodified 744.40177 0.4017693 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 5 0 1 37.087 37.087 2 0.0080509 8843 TMT1-4 120.49 43.642 314.74 402.21 320.86 259.61 347.95 425 297 403 331 261 358 408 2 2 2 2 2 2 59533 17084 660 16881 26106 33733;33734 33733 2 SVEVNFTESLLR Unmodified 1392.7249 0.72489436 2541 Q9BUL8 PDCD10 Programmed cell death protein 10 yes yes 0 0 0 0 0 5.5 0.5 1 1 66.399 66.399 2 6.9418E-07 20575 TMT1-5 118.77 87.394 91.966 131.15 121.61 70.674 99.296 120.82 87 131 123 73 102 116 2 2 2 2 2 2 17596 17085 2541 16882 26107;26108 33735;33736 33736 2 SVFEAFGK Unmodified 883.44397 0.44396847 2869 Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 0 8 0 1 61.882 61.882 2 0.0030441 18254 TMT1-7 133.55 47.7 138.82 189.51 133.15 91.988 149.86 142.83 131 189 138 94 152 138 1 1 1 1 1 1 23604 17086 2869 16883 26109 33737 33737 1 SVFEEEVR Unmodified 993.47673 0.47672516 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 2 0 2 45.187 45.187 2 0.00085345 13081 TMT1-1 95.815 74.54 91.809 114.52 162.09 82.879 135.62 143.24 87 116 160 87 138 138 1 1 1 1 1 1 27351 17087 1577 16884 26110;26111 33738;33739 33739 2 SVFFGPDFITVTK Unmodified 1456.7602 0.76021723 2917 Q9UMS0-3;Q9UMS0 NFU1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial yes no 0 0 0 0 0 9 0 1 77.238 77.238 2 1.0922E-05 22492 TMT1-8 105.2 70.671 15.651 45.154 36.283 21.627 13.648 30.525 15 44 37 22 15 29 1 1 1 1 1 1 6404.7 17088 2917 16885 26112 33740 33740 1 SVFGGLVNYFK Unmodified 1229.6445 0.64445919 366 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 0 0 0 9 0 1 75.825 75.825 3 3.8087E-05 21934 TMT1-8 100.88 54.416 53.987 80.554 55.367 51.263 62.768 83.489 51 80 58 51 65 80 1 1 1 1 1 1 6556 17089 366 16886 26113 33741 33741 1 SVFIIFFQGDQLK Unmodified 1540.829 0.8289655 2341 Q93050-1;Q93050;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 0 9 0 1 85.506 85.506 3 9.041E-05 25693 TMT1-8 91.858 51.94 23.162 36.005 44.072 28.268 42.644 60.611 22 36 44 29 44 58 1 1 1 1 1 1 4015.3 17090 2341 16887 26114 33742 33742 1 SVFLEQMK Unmodified 980.5001 0.50010314 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 57.633 57.633 2 0.0099874 16597 TMT1-7 99.802 40.557 53.855 87.741 71.533 43.035 42.221 53.161 51 87 73 44 44 51 1 1 1 1 1 1 3484 17091 2073 16888 26115 33743 33743 1 SVFPLSVSDSPAR Unmodified 1360.6987 0.69867961 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 7 0 1 58.427 58.427 2 1.0067E-12 16780 TMT1-6 161.19 108.1 99.153 183.7 131.62 138.54 236.69 202.18 94 181 138 138 239 196 2 2 2 2 2 2 16044 17092 2066 16889 26116 33744;33745 33744 2 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR Unmodified 3355.6976 0.69762356 999 P33240-2;P33240 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 1 7 0 1 93.973 93.973 4 1.1028E-05 30527 TMT1-6 55.158 46.19 15.917 29.705 4.6645 23.503 14.075 15.588 15 29 7 22 15 15 1 1 1 1 1 1 1630.8 17093 999 16890 26117 33746 33746 1 SVGDGETVEFDVVEGEK Unmodified 1794.816 0.81595379 1483 P67809 YBX1 Nuclease-sensitive element-binding protein 1 no no 0 0 0 0 0 2.5 0.5 1 1 61.9 61.9 3 7.9791E-19 19951 TMT1-2 132.84 107.52 153.64 204.13 153.56 146.76 136.57 243.41 145 204 160 145 145 232 3 3 3 3 3 3 43410 17094 1483 16891 26118;26119 33747;33748;33749 33749 3 SVGMIAGGTGITPMLQVIR Unmodified 1900.0274 0.027424084 388 P00387-2;P00387;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 0 9 0 1 74.298 74.298 3 5.8945E-16 21321 TMT1-8 118.32 98.788 30.326 43.159 96.438 56.751 47.601 91.384 29 44 94 58 51 87 1 1 1 1 1 1 25329 17095 388 16892 26120 33750 33750 1 SVGQYDNR Unmodified 937.42536 0.42535829 695 P13861-2;P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 0 3 0 1 28.416 28.416 2 0.0057441 6730 TMT1-2 114.64 67.803 77.141 147.83 74.406 64.998 85.721 66.844 73 145 80 65 87 65 1 1 1 1 1 1 12062 17096 695 16893 26121 33751 33751 1 SVGSQWASPENPCLINECVR Unmodified 2302.047 0.047049907 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 58.51 58.51 3 1.0567E-10 17315 TMT1-4 102.98 95.99 30.535 66.408 41.479 44.684 49.731 45.485 29 65 44 44 51 44 1 1 1 1 1 1 36786 17097 471 16894 26122 33752 33752 1 SVGYKPDFVGFEIPDK Unmodified 1796.8985 0.89850163 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 1 7 0 1 66.229 66.229 3 6.1586E-09 19898 TMT1-6 114.52 86.87 53.641 94.701 101.57 63.679 69.767 106.74 51 94 102 65 73 102 1 1 1 1 1 1 19108 17098 395 16895 26123 33753 33753 1 SVHELEK Unmodified 840.43413 0.43413207 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.88 1.69 1 1 1 2 1 2 33.258 33.258 2;3 0.0015429 7577 TMT1-3 121.62 80.59 9148.7 14132 11964 9020.9 11230 13804 8659 14050 12255 9099 11586 13250 12 12 12 12 12 12 1541800 17099 1019 16896 26124;26125;26126;26127;26128;26129;26130;26131 33754;33755;33756;33757;33758;33759;33760;33761;33762;33763;33764;33765;33766 33759 13 SVHKVEPITK Unmodified 1136.6554 0.65535823 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 1 7.5 0.5 1 1 34.973 34.973 4 0.0030148 7670 TMT1-6 79.82 69.21 432.95 460.64 422.13 347.32 419.15 640.43 408 467 432 348 437 612 3 3 3 3 3 3 20979 17100 891 16897 26132;26133 33767;33768;33769 33767 3 SVHPYEVAEVIALPVEQGNFPYLQWVR Unmodified 3139.6131 0.61310607 246 O60888-3;O60888;O60888-2 CUTA Protein CutA yes no 0 0 0 0 0 8 1 1 1 85.161 85.161 3;4 2.7824E-11 27381 TMT1-6 80.83 66.596 39.596 27.8 23.106 22.138 28.246 31.174 37 29 22 22 29 30 1 2 1 2 2 2 11107 17101 246 16898 26134;26135 33770;33771 33770 2 SVIDLRPEDVVHESGSLGDR Unmodified 2179.0869 0.086924112 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 1 5 1 1 1 55.727 55.727 4 2.9186E-13 16605 TMT1-3 105.96 89.465 169.1 263.84 210.72 166 211.33 233.82 160 262 217 167 217 225 2 2 2 2 2 2 39551 17102 2378 16899 26136;26137 33772;33773 33772 2 SVIDPVPAPVGDSHVDGAAK Unmodified 1929.9796 0.97960549 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 4 0 2 51.538 51.538 3;4 2.8025E-46 14877 TMT1-3 191.95 182.67 230.4 335.79 305.68 237.84 274.71 302.37 218 335 312 239 283 291 2 2 2 2 2 2 41824 17103 1680 16900 26138;26139 33774;33775 33775 2 SVIDTSTIVR Unmodified 1089.603 0.60298831 206 O43815;O43815-2 STRN Striatin yes no 0 0 0 0 0 6 0 1 49.702 49.702 2 0.02314 13866 TMT1-5 74.267 39.167 68.803 86.508 85.01 80.525 98.293 136.84 65 87 87 80 102 131 1 1 1 1 1 1 188460 17104 206 16901 26140 33776 33776 1 SVIDYQTHFR Unmodified 1264.62 0.62003536 2126 Q86XR7-2;Q9Y3B3-2;Q9Y3B3 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 0 6 0 1 42.847 42.847 3 7.1844E-22 11282 TMT1-5 202.96 163.94 115.6 137.17 111.82 109.52 157.17 150.08 109 138 116 109 160 145 1 1 1 1 1 1 32145 17105 2126 16902 26141 33777 33777 1 SVIENAK Unmodified 759.41267 0.41266834 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 5 0 1 37.622 37.622 2 0.0079148 9101 TMT1-4 122.13 67.923 203.11 196.91 322.25 177.5 176.22 357.41 192 203 317 183 188 340 1 1 1 1 1 1 23283 17106 1913 16903 26142 33778 33778 1 SVIEQGGIQTVDQLIK Unmodified 1726.9465 0.94651445 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 6 0 2 69.31 69.31 3;4 1.1971E-08 21712 TMT1-5 108.41 90.492 122.55 197.69 155.19 122.27 155.01 195.98 116 196 160 123 160 188 2 2 2 2 2 2 41649 17107 2267 16904 26143;26144 33779;33780 33779 2 SVIGHLQTK Unmodified 981.56073 0.56072956 207 O43837;O43837-3 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 0 8 0 1 38.472 38.472 3 0.00075978 9025 TMT1-7 70.056 38.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17108 207 16905 26145 33781 33781 1 SVIHSHIK Unmodified 919.52395 0.52395013 1899 Q16666-3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 0 8 0 1 29.061 29.061 3 0.023264 5457 TMT1-7 60.478 35.555 30.673 66.791 17.978 37.349 49.299 67.883 29 65 22 36 51 65 1 1 1 1 1 1 1870.9 17109 1899 16906 26146 33782 33782 1 SVILEAFSSPSEEVK Unmodified 1620.8247 0.82466798 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 6 0 1 68.493 68.493 3 8.2987E-06 21401 TMT1-5 95.854 64.464 115.44 160.47 119.06 85.594 127.65 158.39 109 160 123 87 131 152 2 2 2 2 2 2 31072 17110 2116 16907 26147 33783;33784 33783 2 SVIPSDGPSVACVK Unmodified 1414.7126 0.71261511 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 6 0 1 52.762 52.762 3 0.0057211 15213 TMT1-5 58.831 38.725 169.01 277.62 214.17 215.56 238.3 295.94 160 275 223 213 247 284 1 1 1 1 1 1 34067 17111 451 16908 26148 33785 33785 1 SVIRPATQQAQK Unmodified 1325.7415 0.74154747 1742 Q13976-2 PRKG1 cGMP-dependent protein kinase 1 yes yes 0 0 0 0 1 8 0 1 32.074 32.074 3 0.0021495 6544 TMT1-7 77.279 49.365 53.774 87.515 85.336 73.547 61.487 90.987 51 87 87 73 65 87 1 1 1 1 1 1 9908.8 17112 1742 16909 26149 33786 33786 1 SVISGGLDALEFIGK Unmodified 1504.8137 0.81370936 2736 Q9NRY5 FAM114A2 Protein FAM114A2 yes yes 0 0 0 0 0 7 0 1 82.081 82.081 3 0.001613 26123 TMT1-6 50.806 19.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17113 2736 16910 26150 33787 33787 1 SVISGGLDALEFIGKK Unmodified 1632.9087 0.90867238 2736 Q9NRY5 FAM114A2 Protein FAM114A2 yes yes 0 0 0 0 1 8 0 1 72.92 72.92 3 0.0010589 22835 TMT1-7 68.283 53.295 69.13 63.672 49.439 35.335 56.721 67.671 65 65 51 36 58 65 1 1 1 1 1 1 123820 17114 2736 16911 26151 33788 33788 1 SVIVGAGYIAVEMAGILSALGSK Unmodified 2205.2079 0.20789087 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 110.81 110.81 4 5.5673E-05 34300 TMT1-8 56.766 40.082 4.1991 11.32 6.0253 19.044 14.427 11.314 4 11 7 18 15 11 1 1 1 1 1 1 1768.4 17115 389 16912 26152 33789 33789 1 SVKEDSNLTLQEK Unmodified 1489.7624 0.76240208 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 1 5 0 2 43.859 43.859 3;4 2.2714E-06 11577 TMT1-4 115.09 55.193 407.25 704.48 387.36 389.52 494.21 591.39 385 694 415 386 509 568 2 2 2 2 2 2 42970 17116 1139 16913 26153;26154 33790;33791 33790 2 SVKPQILSVFGDIALAIGGEFK Unmodified 2288.278 0.27801935 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 1 9 0 1 97.908 97.908 4 4.3858E-14 30192 TMT1-8 92.95 69.622 61.451 72.352 70.359 64.974 99.83 82.431 58 73 72 65 101 80 2 2 2 2 2 2 7659.6 17117 1803 16914 26155 33792;33793 33792 2 SVLAETEGILQK Unmodified 1286.7082 0.70818166 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 6 0 1 65.124 65.124 3 0.0088814 20091 TMT1-5 60.49 41.358 61.54 72.601 55.136 66.301 77.525 90.53 58 73 58 65 80 87 1 1 1 1 1 1 6165.4 17118 2109 16915 26156 33794 33794 1 SVLDAAQIVGLNCLR Unmodified 1627.8716 0.87157537 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 8 0 1 73.643 73.643 2 3.4496E-14 22918 TMT1-7 116.03 84.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17119 2303 16916 26157 33795 33795 1 SVLDDKLVFVK Unmodified 1261.7282 0.72818882 1941 Q4KMQ2-3;Q4KMQ2;Q4KMQ2-4;Q4KMQ2-2 ANO6 Anoctamin-6 yes no 0 0 0 0 1 8 0 1 63.613 63.613 3 8.6947E-07 18976 TMT1-7 131.17 87.544 298.32 453.11 333.4 251.44 102.86 414.94 282 450 345 250 123 392 1 1 1 1 1 1 28006 17120 1941 16917 26158 33796 33796 1 SVLEDSALVLQYHAR Unmodified 1699.8893 0.88933392 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 5 0 1 59.584 59.584 3 4.6512E-06 17748 TMT1-4 99.668 88.228 61.421 87.381 62.507 50.979 55.195 91.167 58 87 65 51 58 87 1 1 1 1 1 1 16800 17121 2779 16918 26159 33797 33797 1 SVLEEIGLT Unmodified 959.51753 0.51752734 1334 P56377 AP1S2 AP-1 complex subunit sigma-2 yes yes 0 0 0 0 0 4 0 1 77.963 77.963 2 0.0010801 25272 TMT1-3 124.59 120.05 61.662 65.386 40.681 36.157 40.721 75.59 58 66 43 36 43 72 2 2 2 2 2 2 18626 17122 1334 16919 26160 33798;33799 33799 2 SVLEEMGLA Unmodified 947.46338 0.46338328 1407 P61966 AP1S1 AP-1 complex subunit sigma-1A yes yes 0 0 0 0 0 4 0 1 77.478 77.478 2 0.029 25011 TMT1-3 74.415 44.23 15.787 36.897 20.506 22.563 13.862 23.056 15 36 22 22 15 22 1 1 1 1 1 1 3278.4 17123 1407 16920 26161 33800 33800 1 SVLFVCLGNICR Unmodified 1436.7268 0.72682539 877 P24666;P24666-3;P24666-2;P24666-4 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 9 0 1 69.819 69.819 3 0.0068004 19559 TMT1-8 57.003 33.017 69.131 56.119 55.703 74.911 82.846 137.28 65 58 58 73 87 131 1 1 1 1 1 1 12382 17124 877 16921 26162 33801 33801 1 SVLGEADQK Unmodified 945.47673 0.47672516 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 42.229 42.229 2 0.00060483 11182 TMT1-3 133.13 63.536 130.2 190.02 137.53 163.92 147.1 126.92 123 189 145 160 152 123 1 1 1 1 1 1 18184 17125 1184 16922 26163 33802 33802 1 SVLGQLGITK Unmodified 1014.6073 0.6073454 407 P01009;P01009-2 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes no 0 0 0 0 0 9 0 1 61.478 61.478 3 0.00081751 16258 TMT1-8 90.685 53.21 153.25 277.51 157.16 137.18 227.77 250.41 145 273 167 138 232 241 1 1 1 1 1 1 35588 17126 407 16923 26164 33803 33803 1 SVLISLK Unmodified 758.49019 0.49019038 596 P09496-2;P09496-4;P09496-3;P09496;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 0 9 0 1 58.061 58.061 2 0.0080197 14924 TMT1-8 141.78 0 853.34 1099.3 1000.3 816.35 1079.2 1291 806 1103 1023 820 1110 1240 2 2 2 2 2 2 119900 17127 596 16924 26165 33804;33805 33804 2 SVLQAVQK Unmodified 871.51272 0.51271674 1907 Q5IS59;Q16799;Q16799-3;Q16799-2 RTN1 Reticulon-1 yes no 0 0 0 0 0 8 0 1 44.843 44.843 2 0.00492 11557 TMT1-7 121.62 0 122.69 166.77 158.07 99.277 148.21 181.25 116 167 160 102 152 174 1 1 1 1 1 1 20435 17128 1907 16925 26166 33806 33806 1 SVLQPSQQK Unmodified 1013.5506 0.55055881 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 0 7 0 1 38.624 38.624 3 0.017447 9008 TMT1-6 59.645 11.792 258.94 296.81 231.04 141.07 193.59 235.39 244 299 237 145 199 226 1 1 1 1 1 1 6237.9 17129 2963 16926 26167 33807 33807 1 SVLVPHGSK Unmodified 922.52362 0.52361577 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 8 0 1 35.672 35.672 3 0.015473 7917 TMT1-7 61.353 37.381 99.247 161.3 134.67 100.35 165.42 165.84 94 160 138 102 168 160 1 1 1 1 1 1 9544.6 17130 1583 16927 26168 33808 33808 1 SVLWWLPVEK Unmodified 1255.6965 0.69649476 2199 Q8NBJ7;Q8NBJ7-3;Q8NBJ7-2 SUMF2 Sulfatase-modifying factor 2 yes no 0 0 0 0 0 9 0 2 82.281 82.281 2;3 0.0022786 24514 TMT1-8 72.2 48.129 92.11 131.55 97.038 111.54 96.574 145.42 87 131 102 109 102 139 3 3 3 3 3 3 17241 17131 2199 16928 26169;26170 33809;33810;33811 33810 3 SVMDATQIAGLNCLR Unmodified 1647.8073 0.80726055 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 7 0 1 64.84 64.84 3 7.5922E-05 19414 TMT1-6 83.499 53.294 54.266 50.029 34.423 28.134 80.343 59.535 51 51 36 29 80 58 1 1 1 1 1 1 10366 17132 1009 16929 26171 33812 33812 1 SVMEELKR Unmodified 990.51682 0.51681584 2360 Q96A72 MAGOHB Protein mago nashi homolog 2 no no 0 0 0 0 1 6 0 1 42.983 42.983 3 0.021411 11354 TMT1-5 69.423 16.707 184.5 258.48 151.32 193.28 227.68 330.36 174 257 163 189 237 316 1 1 1 1 1 1 10988 17133 2360 16930 26172 33813 33813 1 SVMIDEDMTAR Unmodified 1266.5584 0.55842266 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 2.5 0.5 1 1 49.809 49.809 2 1.7528E-09 14934 TMT1-1 166.66 128.57 192.67 261.07 218.02 197.36 206.13 373.61 182 261 225 196 218 356 3 3 3 3 3 3 36162 17134 1700 16931 26173;26174 33814;33815;33816 33814 3 SVNELIYK Unmodified 964.52295 0.52294707 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 0 6 0 1 53.81 53.81 3 0.026581 15617 TMT1-5 57.96 19.874 168.18 356.28 286.16 145.44 193.52 262.04 160 350 291 152 200 251 1 1 1 1 1 1 17227 17135 775 16932 26175 33817 33817 1 SVNESLNNLFITEEDYQALR Unmodified 2354.139 0.13901926 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4.5 0.5 1 1 74.421 74.421 3 1.316E-39 23630 TMT1-4 172.84 161.1 147.36 171.54 155.13 156.06 102.13 167.65 139 173 160 153 110 160 4 4 4 4 4 4 90734 17136 1540 16933 26176;26177 33818;33819;33820;33821 33821 4 SVNFDMTSK Unmodified 1027.4644 0.46444592 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 7 0 1 51.53 51.53 2 0.00090334 14127 TMT1-6 86.189 50.751 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17137 2267 16934 26178 33822 33822 1 SVNVKPLVTHR Unmodified 1248.7303 0.73025451 1544 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 0 1 9 0 1 37.283 37.283 4 0.0070314 7170 TMT1-8 69.261 36.402 77.419 78.453 86.513 56.644 84.749 106.31 73 80 87 58 87 102 1 1 1 1 1 1 3876.1 17138 1544 16935 26179 33823 33823 1 SVPAFIDISEEDQAAELR Acetyl (N-term) 2030.9797 0.97966507 2077 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M yes yes 1 0 0 0 0 2 0 1 83.076 83.076 2 4.259E-23 27009 TMT1-1 92.295 66.178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2822.9 17139 2077 16936 26180 33824 33824 1 SVPENLLK Unmodified 898.51238 0.51238239 1677 Q13155-2;Q13155 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 0 6 0 1 52.012 52.012 2 0.037324 14932 TMT1-5 78.149 27.446 138.62 196.53 159.56 194.05 160.62 149.99 131 196 167 189 167 145 1 1 1 1 1 1 10024 17140 1677 16937 26181 33825 33825 1 SVPFIHVPSPAVPK Unmodified 1473.8344 0.83438523 275 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 yes yes 0 0 0 0 0 9 0 1 58.613 58.613 3 0.0022591 15203 TMT1-8 57.804 22.58 69.013 71.982 61.984 82.597 61.071 90.999 65 73 65 80 65 87 1 1 1 1 1 1 7235.4 17141 275 16938 26182 33826 33826 1 SVPGLNVDMEEEEEEEDIDHLVK Unmodified 2654.1905 0.19052206 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 3 0 1 69.817 69.817 3 3.0684E-09 23009 TMT1-2 83.871 69.562 15.81 21.851 29.353 14.24 21.574 22.836 15 22 29 15 22 22 1 1 1 1 1 1 6156.6 17142 2378 16939 26183 33827 33827 1 SVPHLQK Unmodified 807.46029 0.46028724 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 6 2.92 1 1 2 36.504 36.504 3 0.00028363 7994 TMT1-7 105.39 62.144 888.47 2725.5 1472.6 1182.8 1602.4 1922.1 849 2641 1565 1190 1647 1846 4 4 4 4 4 4 155200 17143 534 16940 26184;26185;26186;26187 33828;33829;33830;33831;33832;33833 33832 6 SVPIQSLSELER Unmodified 1356.7249 0.72489436 161 O43182-5;O43182-3;O43182-2;O43182-4;O43182 ARHGAP6 Rho GTPase-activating protein 6 yes no 0 0 0 0 0 5 0 2 58.4 58.4 2 2.1529E-16 17233 TMT1-4 147.72 105.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17144 161 16941 26188;26189 33834;33835 33834 2 SVPSDIFQIQATTIYANTINTFR Unmodified 2599.3282 0.32821702 1647 Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 0 0 0 9 0 2 86.996 86.996 3;4 6.8797E-21 26270 TMT1-8 97.509 80.227 15.546 37.306 60.648 19.602 44.105 29.655 15 37 59 22 44 29 1 1 1 1 1 1 3872.5 17145 1647 16942 26190;26191 33836;33837 33837 2 SVPTFQSLPEEILSK Unmodified 1673.8876 0.88760259 1742 Q13976-2;Q13976 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 7 0 1 75.581 75.581 3 6.8172E-05 23631 TMT1-6 84.508 69.115 68.813 86.536 83.237 120.28 82.373 90.391 65 87 87 116 87 87 1 1 1 1 1 1 12268 17146 1742 16943 26192 33838 33838 1 SVPTSTVFYPSDGVATEK Unmodified 1883.9153 0.9152739 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 5.75 0.433 1 3 58.85 58.85 2;3;4 2.3623E-19 17611 TMT1-5 135.15 97.198 406.79 526.01 435.7 394.76 468.95 528.15 384 527 450 393 483 508 3 3 3 3 3 3 139130 17147 937 16944 26193;26194;26195;26196 33839;33840;33841;33842 33840 4 SVPTWLK Unmodified 829.46979 0.46978929 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 9 0 1 56.582 56.582 2 0.010385 14355 TMT1-8 120.49 53.495 371.6 558.02 190.73 462.77 418.86 646.84 350 551 228 441 442 618 1 1 1 1 1 1 56458 17148 1427 16945 26197 33843 33843 1 SVQALIK Unmodified 757.46979 0.46978929 1878 Q15833 STXBP2 Syntaxin-binding protein 2 yes yes 0 0 0 0 0 8 0 1 49.493 49.493 2 0.0083387 13343 TMT1-7 117.02 35.722 778.78 1017.5 978.55 669.35 711.61 952.95 736 1021 992 678 741 913 2 2 2 2 2 2 155090 17149 1878 16946 26198 33844;33845 33844 2 SVQATTENK Unmodified 976.48254 0.48253882 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 31.413 31.413 2;3 0.00082354 6878 TMT1-3 99.855 39.173 161.84 87.877 136.98 140.15 134.05 112.37 152 95 138 138 138 109 2 2 2 2 2 2 10421 17150 1663 16947 26199;26200 33846;33847 33846 2 SVQDGEPWR Unmodified 1072.4938 0.49377221 2229 Q8NG06 TRIM58 E3 ubiquitin-protein ligase TRIM58 yes yes 0 0 0 0 0 3 0 1 41.163 41.163 2 0.0016338 11762 TMT1-2 116.52 70.184 53.833 72.57 88.068 32.331 94.002 82.598 51 73 87 36 94 80 1 1 1 1 1 1 15474 17151 2229 16948 26201 33848 33848 1 SVQNLANLVEFGAK Unmodified 1488.7936 0.79364262 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 8 0 1 72.026 72.026 3 1.5972E-05 22252 TMT1-7 95.822 71.531 53.959 88.029 53.849 75.267 69.784 90.751 51 87 58 73 73 87 1 1 1 1 1 1 9126.3 17152 822 16949 26202 33849 33849 1 SVQPTSEER Unmodified 1031.4884 0.48835248 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 2 0 1 25.719 25.719 2 0.0013822 5336 TMT1-1 120.27 96.844 23.026 66.926 40.783 60.46 26.778 22.688 22 65 44 58 29 22 1 1 1 1 1 1 4047.2 17153 2864 16950 26203 33850 33850 1 SVQTFADK Unmodified 894.4447 0.44469675 1145 P47756-2 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 0 0 5.5 0.5 1 1 43.512 43.512 2;3 0.0022128 11557 TMT1-5 137.9 61.87 2402.4 3294.7 2623.6 1952.5 2301.1 3117.4 2269 3290 2699 1969 2388 2986 2 2 2 2 2 2 231900 17154 1145 16951 26204;26205 33851;33852;33853 33852 3 SVQTTLQTDEVK Unmodified 1347.6882 0.6881745 280;330 O75477;O94905;O94905-2;O94905-3 ERLIN1;ERLIN2 Erlin-1;Erlin-2 no no 0 0 0 0 0 4 0 1 46.199 46.199 2 8.3159E-14 12799 TMT1-3 176.87 127.33 38.133 58.579 33.617 36.545 42.52 53.153 36 58 36 36 44 51 1 1 1 1 1 1 8601.9 17155 280;330 16952 26206 33854 33854 1 SVQVSTLK Unmodified 860.49673 0.49673232 2314 Q92747;Q92747-2 ARPC1A Actin-related protein 2/3 complex subunit 1A yes no 0 0 0 0 0 7 0 1 44.359 44.359 2 0.0059781 11296 TMT1-6 111.46 54.174 107.98 121.19 143.57 123.65 118.85 120.26 102 123 145 123 123 116 1 1 1 1 1 1 9979.2 17156 2314 16953 26207 33855 33855 1 SVSAFAPICNPVLCPWGK Unmodified 2001.9805 0.98047389 637 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 0 9 0 1 76.543 76.543 3 2.5985E-14 22236 TMT1-8 111.34 88.353 99.574 122.27 112.77 110.02 127.59 127.48 94 123 116 109 131 123 1 1 1 1 1 1 35433 17157 637 16954 26208 33856 33856 1 SVSDNDIR Unmodified 904.42502 0.42502394 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 2.5 0.5 1 1 30.547 30.547 2 8.3929E-05 7228 TMT1-1 156.01 60.465 185.48 223.6 196.84 189.75 270.95 263.03 175 225 203 189 276 254 3 3 3 3 3 3 38346 17158 1311 16955 26209;26210 33857;33858;33859 33857 3 SVSDYDGK Unmodified 869.37668 0.37667677 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 4 0 1 38.118 38.118 2 0.0035185 9599 TMT1-3 131.06 68.347 779.8 1016 808.32 654.94 854.86 1065.1 736 1017 834 658 881 1022 1 1 1 1 1 1 116760 17159 530 16956 26211 33860 33860 1 SVSLPSLDPASAK Unmodified 1270.6769 0.67688153 463 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 0 0 0 0 0 7 0 1 59.79 59.79 3 0.0034568 17413 TMT1-6 65.295 44.455 68.799 86.496 85.706 64.916 54.298 98.655 65 87 87 65 58 94 1 1 1 1 1 1 10438 17160 463 16957 26212 33861 33861 1 SVSLTGAPESVQK Unmodified 1301.6827 0.68269519 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 6 0 1 48.002 48.002 2 1.9824E-12 13352 TMT1-5 155.24 141.58 46.551 73.722 48.545 44.426 41.095 84.107 44 73 51 44 44 80 1 1 1 1 1 1 7874.7 17161 2334 16958 26213 33862 33862 1 SVSNAATR Unmodified 804.40898 0.40897995 852 P22749-2;P22749 GNLY Granulysin yes no 0 0 0 0 0 4 0 1 21.767 21.767 2 0.020848 3714 TMT1-3 88.37 36.797 4.2414 7.1207 2.468 7.3942 5.8322 3.0316 4 7 3 7 6 3 1 1 1 1 1 1 555.23 17162 852 16959 26214 33863 33863 1 SVSQGFCFNILCVGETGLGK Unmodified 2172.0344 0.034359956 1752 Q14141-2;Q14141-4;Q14141;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 0 8.67 0.471 1 2 79.878 79.878 3;4 3.3702E-15 23469 TMT1-8 99.059 82.129 207.55 274.75 230.55 236.16 253.62 248.6 196 275 239 233 261 240 3 3 3 3 3 3 43694 17163 1752 16960 26215;26216;26217 33864;33865;33866 33865 3 SVSSNVASVSPIPAGSK Unmodified 1585.8312 0.83115034 3057 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 0 7 0 1 50.552 50.552 3 8.3831E-14 13733 TMT1-6 120.9 99.339 68.862 102.86 61.208 58.439 69.495 121.67 65 102 65 58 73 116 1 1 1 1 1 1 10261 17164 3057 16961 26218 33867 33867 1 SVSSSSYR Unmodified 871.40356 0.40356022 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 5 1.87 1 1 1 1 26.097 26.097 2 1.6444E-12 4812 TMT1-3 187.34 150.18 323.14 439.77 140.48 200.88 380.6 375.03 304 436 164 198 385 362 5 5 5 5 5 5 58615 17165 575 16962 26219;26220;26221;26222 33868;33869;33870;33871;33872 33869 5 SVSTPSEAGSQDSGDGAVGSR Unmodified 1949.8563 0.85625547 1699 Q13409-6;Q13409-3;Q13409-7;Q13409-2;Q13409-5;Q13409 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 0 0 0 2 0 1 35.093 35.093 3 2.2893E-07 9052 TMT1-1 84.113 74.555 16.02 14.88 0 7.5348 6.1765 23.276 15 15 0 7 7 22 1 1 0 1 1 1 6616.9 17166 1699 16963 26223 33873 33873 1 SVTAFFK Unmodified 798.42759 0.42759012 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 9 0 1 58.78 58.78 2 0.044752 15201 TMT1-8 82.671 48.593 146.49 165.72 125.17 132.31 181.24 180.31 138 167 131 131 185 174 1 1 1 1 1 1 17856 17167 1584 16964 26224 33874 33874 1 SVTAFFTWLR Unmodified 1226.6448 0.64479354 173 O43432-4;O43432;O43432-3 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 0 0 0 0 0 9 0 1 80.909 80.909 2 0.008934 23924 TMT1-8 70.256 38.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17168 173 16965 26225 33875 33875 1 SVTCHVK Unmodified 829.41162 0.41162248 424 P01876;P01877;P0DOX2 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region yes no 0 0 0 0 0 6 0 1 27.812 27.812 3 0.018565 5395 TMT1-5 69.344 48.443 46.671 57.865 41.899 44.95 34.307 37.397 44 58 44 44 36 36 1 1 1 1 1 1 3475.1 17169 424 16966 26226 33876 33876 1 SVTDSIRDEYAFLQK Unmodified 1770.8788 0.87882882 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 6 0 2 62.883 62.883 3;4 9.9866E-15 19243 TMT1-5 133.91 90.882 351.72 484.36 349.28 478.29 311.26 469.75 332 483 371 462 334 449 2 2 2 2 2 2 71467 17170 68 16967 26227;26228 33877;33878 33878 2 SVTEQGAELSNEER Unmodified 1547.7063 0.70634376 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 0 2.14 0.99 2 3 1 1 37.833 37.833 2;3 5.221E-54 10078 TMT1-1 225.36 179.45 922.05 1086.1 1004.9 746.09 906.03 1189.4 870 1095 1024 753 938 1140 10 10 10 10 10 10 907440 17171 1471 16968 26229;26230;26231;26232;26233;26234;26235 33879;33880;33881;33882;33883;33884;33885;33886;33887;33888 33882 10 SVTHAYYR Unmodified 995.48248 0.48247924 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2;Q9ULW5-2;Q9ULW5 RAB37;RAB26 Ras-related protein Rab-37;Ras-related protein Rab-26 yes no 0 0 0 0 0 9 0 1 27.226 27.226 3 0.029539 4434 TMT1-8 46.994 28.212 7.3324 18.417 14.405 15.338 10.556 7.1608 7 18 15 15 11 7 1 1 1 1 1 1 369.14 17172 2366 16969 26236 33889 33889 1 SVTKLEK Unmodified 803.47527 0.4752686 595;593;592;594 P09493-2;P09493-3;P09493-10;P09493-5;P09493-8 no no 0 0 0 0 1 7 0 1 38.086 38.086 3 0.032595 8826 TMT1-6 69.812 25.463 1985 2413.9 1747.3 1458.4 1187.3 2890.2 1871 2422 1818 1450 1294 2743 1 1 1 1 1 1 67247 17173 592;593;594;595 16970 26237 33890 33890 1 SVTLHTDVGDIK Acetyl (N-term) 1325.6827 0.68269519 2629 Q9H2H8;Q9H2H8-2 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes no 1 0 0 0 0 3 0 1 53.528 53.528 2 6.165E-22 16654 TMT1-2 68.551 37.939 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17174 2629 16971 26238 33891 33891 1 SVTLLIK Unmodified 772.50584 0.50584045 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 9 0 1 58.394 58.394 2 0.0079068 14994 TMT1-8 132.29 32.219 1372 1980.1 1276.1 1346.6 1593.6 1958.6 1295 1968 1351 1329 1647 1880 2 2 2 2 2 2 88748 17175 1068 16972 26239 33892;33893 33892 2 SVVALHNLINNK Unmodified 1320.7514 0.75138388 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 9 0 1 52.096 52.096 3 1.8908E-08 12617 TMT1-8 132.32 93.966 107.57 167.54 173.29 98.504 141.13 175.06 102 167 174 102 145 168 1 1 1 1 1 1 16168 17176 1251 16973 26240 33894 33894 1 SVVANFIVK Unmodified 975.57532 0.57531699 1917 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 0 0 9 0 1 61.283 61.283 2 0.042899 16253 TMT1-8 64.711 23.724 46.476 81.066 55.033 58.93 62.965 67.493 44 80 58 58 65 65 1 1 1 1 1 1 6869.5 17177 1917 16974 26241 33895 33895 1 SVVAPPGAPK Unmodified 921.52837 0.5283668 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 0 7 0 1 42.544 42.544 2 0.00058622 10550 TMT1-6 112.84 83.466 38.051 65.906 41.148 51.938 71.919 59.776 36 65 44 51 73 58 1 1 1 1 1 1 15555 17178 718 16975 26242 33896 33896 1 SVVCQESDLPDELLYGR Unmodified 1978.9306 0.93060639 2739 Q9NS86 LANCL2 LanC-like protein 2 yes yes 0 0 0 0 0 3 0 1 68.379 68.379 3 1.5774E-05 22478 TMT1-2 81.51 72.346 23.337 28.938 20.61 30.086 20.332 37.796 22 29 22 29 22 36 1 1 1 1 1 1 6304.3 17179 2739 16976 26243 33897 33897 1 SVVPGGGAVEAALSIYLENYATSMGSR Unmodified 2698.3272 0.32723074 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 8.67 0.471 1 2 94.013 94.013 3;4 1.0267E-05 28955 TMT1-8 56.688 39.041 38.161 51.103 35.15 36.488 47.449 92.454 36 51 37 36 50 88 2 2 2 2 3 3 16446 17180 770 16977 26244;26245;26246 33898;33899;33900 33900 3 SVVTPAR Unmodified 728.41809 0.41808807 351 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 0 6 0 1 28.894 28.894 2 0.0022977 5822 TMT1-5 90.777 46.043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17181 351 16978 26247 33901 33901 1 SVVTSIFGVK Unmodified 1035.5964 0.59644637 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 9 0 1 66.322 66.322 2 1.0207E-05 18225 TMT1-8 128.86 81.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17182 1085 16979 26248 33902 33902 1 SVVYYQVK Unmodified 984.52803 0.52803245 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 no no 0 0 0 0 0 7.5 0.5 1 1 48.697 48.697 2 0.00045388 13062 TMT1-6 151.27 85.196 107.95 168.58 109.25 125.84 111.12 129.01 102 167 116 123 116 124 2 2 2 2 2 2 15762 17183 2305 16980 26249;26250 33903;33904 33903 2 SVYAHFPINVVIQENGSLVEIR Unmodified 2483.3173 0.3172584 996 Q5IFJ7;P32969 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 0 7 0 1 71.705 71.705 3 1.1867E-06 22085 TMT1-6 66.045 62.063 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17184 996 16981 26251 33905 33905 1 SVYDGPEQEEYSTFVIDDPQETYK Unmodified 2838.2396 0.23958075 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 3.25 0.433 3 1 68.608 68.608 3;4;5 5.5974E-14 22562 TMT1-2 102.9 97.059 137.73 172.28 149.82 91.209 138.41 112.24 130 173 152 94 138 109 4 4 3 3 2 4 39179 17185 1786 16982 26252;26253;26254;26255 33906;33907;33908;33909 33907 4 SVYSWDIVVQR Unmodified 1350.6932 0.6932003 144 O15371-2;O15371-3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 0 7 0 1 63.24 63.24 2 0.00054925 18753 TMT1-6 76.228 60.656 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17186 144 16983 26256 33910 33910 1 SWDIFFR Unmodified 969.47085 0.47085192 1566 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 72.716 72.716 2 0.011091 20780 TMT1-8 117.93 85.463 177.3 195.1 152.56 178.66 129.02 207.39 167 197 160 174 138 198 1 1 1 1 1 1 29014 17187 1566 16984 26257 33911 33911 1 SWDVETATELLLSN Unmodified 1576.7621 0.76206772 1376 P61086;P61086-2;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 5 0 1 93.701 93.701 2 2.9814E-05 30999 TMT1-4 101.38 76.589 14.688 36.898 24.854 22.219 18.359 14.4 14 36 26 22 19 14 2 2 2 2 2 2 9212.1 17188 1376 16985 26258 33912;33913 33912 2 SWFEGQGLAGK Unmodified 1178.572 0.57202253 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 8 0 1 59.875 59.875 2 0.022879 17590 TMT1-7 70.1 31.308 23.254 36.26 28.454 14.16 28.65 30.096 22 36 29 15 29 29 1 1 1 1 1 1 9273.3 17189 2642 16986 26259 33914 33914 1 SWFSGLLVPK Acetyl (Protein N-term) 1174.6386 0.63864553 166 O43306-2;O43306 ADCY6 Adenylate cyclase type 6 yes no 0 1 0 0 0 9 0 1 93.298 93.298 2 3.7486E-05 28685 TMT1-8 44.349 17.387 39.272 59.768 21.513 53.415 55.596 76.232 37 59 22 51 58 73 2 2 1 2 2 2 7573.7 17190 166 16987 26260 33915;33916 33916 2 SWGTELWDQFDNLEK Acetyl (Protein N-term) 1908.853 0.853008 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 1 0 0 0 5 0 1 96.255 96.255 3 5.269E-06 31958 TMT1-4 44.601 27.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17191 2449 16988 26261 33917 33917 1 SWHDVQVSSAYVK Unmodified 1504.731 0.73104237 172 O43399;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 7 0 1 49.533 49.533 3 0.00017216 13319 TMT1-6 89.231 65.995 139.27 143.29 95.769 118.88 117.2 174.68 131 145 102 116 123 167 1 1 1 1 1 1 13208 17192 172 16989 26262 33918 33918 1 SWHPEEFNCAHCK Unmodified 1700.6824 0.68239439 2411 Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 0 0 6 0 1 38.923 38.923 4 3.2173E-06 9751 TMT1-5 110.8 97.174 191.84 216.48 215.21 126.37 212.13 171.97 181 219 217 131 214 167 1 1 1 1 1 1 13971 17193 2411 16990 26263 33919 33919 1 SWIEEQAMGSFLSVAK Unmodified 1781.8658 0.86582129 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 8 0 1 80.694 80.694 2 3.2086E-14 25640 TMT1-7 109.84 98.632 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17194 932 16991 26264 33920 33920 1 SWITFDLK Unmodified 1008.528 0.52803245 417 P01730 CD4 T-cell surface glycoprotein CD4 yes yes 0 0 0 0 0 9 0 1 71.502 71.502 3 0.02321 20278 TMT1-8 51.059 15.702 30.82 35.9 19.482 45.188 34.552 29.928 29 36 22 43 36 29 1 1 1 1 1 1 4288.5 17195 417 16992 26265 33921 33921 1 SWLAELQQWLKPGLK Unmodified 1795.9985 0.99849044 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 1 9 0 1 85.955 85.955 4 3.0923E-06 25893 TMT1-8 96.464 69.366 107.66 199.08 132 108.34 155.89 158.65 102 196 138 109 159 153 2 2 2 2 2 2 11478 17196 568 16993 26266 33922;33923 33923 2 SWLFGINK Acetyl (Protein N-term) 1005.5284 0.5283668 2761 Q9NVI7-2;Q9NVI7 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 1 0 0 0 9 0 1 86.622 86.622 2 0.00021941 26179 TMT1-8 70.268 44.159 60.95 109.82 122.67 78.977 61.221 121.91 58 109 123 80 66 116 2 2 2 2 2 2 11659 17197 2761 16994 26267 33924;33925 33925 2 SWLHNDLK Unmodified 1011.5138 0.51377937 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 7 0 1 45.942 45.942 3 0.0097745 11902 TMT1-6 74.464 40.726 160.89 183.46 215.31 147.69 298.3 192.96 152 186 216 152 298 189 1 1 1 1 1 1 8619.8 17198 929 16995 26268 33926 33926 1 SWPVDFHWEEPSSR Unmodified 1757.7798 0.77978347 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 0 6 0 1 62.454 62.454 3 9.1373E-05 19032 TMT1-5 86.497 76.158 77.321 109.48 76.7 65.137 71.056 67.262 73 109 80 65 73 65 1 1 1 1 1 1 17905 17199 378 16996 26269 33927 33927 1 SWQDELAQQAEEGSAR Unmodified 1803.8024 0.80236941 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 2.5 0.5 1 1 55.458 55.458 2;3 1.4983E-05 17151 TMT1-1 75.89 63.53 54.144 57.245 48.815 59.71 41.198 60.652 51 58 51 58 44 58 1 1 1 1 1 1 14994 17200 2107 16997 26270;26271 33928;33929 33928 2 SWSLLEQLGLAGADLAAPGVQQQLELER Unmodified 2991.5665 0.56654981 1887 Q16512-2;Q16512;Q16512-3 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 7 0 1 93.991 93.991 4 7.6523E-10 30571 TMT1-6 78.978 49.842 7.3892 6.7026 14.783 22.629 28.517 22.638 7 7 15 22 29 22 1 1 1 1 1 1 2894.5 17201 1887 16998 26272 33930 33930 1 SWSPDVFSLPLR Unmodified 1402.7245 0.72450043 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 0 8 0 1 75.261 75.261 2 0.00046708 23552 TMT1-7 75.652 47.546 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17202 614 16999 26273 33931 33931 1 SWSYGQFEDGILDTCLYVMDR Oxidation (M) 2570.1094 0.10937539 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 5 0 1 79.916 79.916 3 4.3056E-06 25740 TMT1-4 78.354 74.691 15.934 14.642 14.597 15.125 21.276 30.307 15 15 15 15 22 29 1 1 1 1 1 1 5668.2 17203 393 17000 26274 33932 33932 40 1 SWSYGQFEDGILDTCLYVMDR Unmodified 2554.1145 0.11446077 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 5.5 0.5 1 1 84.784 84.784 3 1.4321E-10 27942 TMT1-5 99.407 93.244 109.36 139.24 76.847 42.42 92.973 129.53 103 139 81 44 95 124 5 5 5 4 5 5 19635 17204 393 17000 26275;26276 33933;33934;33935;33936;33937 33936 5 SWTAADMAAQITK Unmodified 1392.6708 0.6707503 474;426 P04439;P04439-2;P01893 HLA-A;HLA-H HLA class I histocompatibility antigen, A-3 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H no no 0 0 0 0 0 7 0 1 62.923 62.923 2 1.3279E-13 18628 TMT1-6 130.69 90.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17205 474;426 17001 26277 33938 33938 1 SWTAADTAAQITQR Unmodified 1518.7427 0.74266969 425;629 P01889;P10321 HLA-B;HLA-C HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain no no 0 0 0 0 0 6 0 1 51.08 51.08 2 3.7335E-66 14549 TMT1-5 241.78 218.86 84.519 170.7 77.367 136.92 87.617 128.62 80 167 87 131 94 123 1 1 1 1 1 1 34275 17206 425;629 17002 26278 33939 33939 1 SWTAVDTAAQISEQK Unmodified 1633.7948 0.79476484 689 P13747 HLA-E HLA class I histocompatibility antigen, alpha chain E yes yes 0 0 0 0 0 5 0 1 59.715 59.715 3 7.4157E-05 17591 TMT1-4 83.729 54.401 77.081 101.26 123.85 62.202 77.714 90.524 73 102 123 65 80 87 1 1 1 1 1 1 28699 17207 689 17003 26279 33940 33940 1 SWTVEDLQK Unmodified 1104.5451 0.54513908 1665 Q13043 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes yes 0 0 0 0 0 6 0 1 56.671 56.671 2 3.8264E-05 16783 TMT1-5 122.13 73.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17208 1665 17004 26280 33941 33941 1 SWVIDQK Unmodified 874.45487 0.45486751 2745 Q9NTK5;Q9NTK5-2;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 7 0 1 51.988 51.988 2 0.0088226 14279 TMT1-6 114.93 42.109 215.31 348.5 306.69 248.24 125.25 254.4 204 346 314 246 139 242 1 1 1 1 1 1 28016 17209 2745 17005 26281 33942 33942 1 SWYLEDNINK Unmodified 1280.6037 0.60371659 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 6 0 1 59.003 59.003 3 3.4624E-05 17677 TMT1-5 131.12 94.669 129.91 189.2 187.54 135.44 224.41 198.27 123 189 190 138 227 192 1 1 1 1 1 1 34640 17210 666 17006 26282 33943 33943 1 SYCAEIAHNVSSK Unmodified 1464.6667 0.66672755 1458 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 0 6 1 1 1 41.358 41.358 3 1.3498E-08 10533 TMT1-4 124.47 105.64 162.02 218.09 175.86 136.59 199.89 179.78 153 218 181 138 203 174 2 2 2 2 2 2 22564 17211 1458 17007 26283;26284 33944;33945 33944 2 SYCGHGIHK Unmodified 1057.4763 0.47634801 1284 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 0 6 0 1 27.431 27.431 4 0.0073788 5262 TMT1-5 66.621 48.757 61.299 103.23 69.581 65.148 93.043 66.635 58 102 73 65 94 65 1 1 1 1 1 1 4591.4 17212 1284 17008 26285 33946 33946 1 SYCNDQSTGDIK Unmodified 1386.5722 0.57215846 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 3 0 1 38.703 38.703 3 0.00024456 10823 TMT1-2 90.731 62.098 46.703 50.4 42.75 35.877 49.074 76.418 44 51 44 36 51 73 1 1 1 1 1 1 9001.5 17213 395 17009 26286 33947 33947 1 SYDLSDITQADLSR Unmodified 1582.7475 0.74748029 275 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 yes yes 0 0 0 0 0 4 0 1 61.391 61.391 3 1.3777E-05 18761 TMT1-3 79.036 46.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17214 275 17010 26287 33948 33948 1 SYDQVHSGK Unmodified 1019.4672 0.46722311 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 5 0 1 29.078 29.078 3 0.043704 5762 TMT1-4 46.606 19.277 70.391 32.822 44.017 28.429 34.26 60.85 66 36 44 29 36 58 1 1 1 1 1 1 3061.3 17215 1824 17011 26288 33949 33949 1 SYDVPPPPMEPDHPFYSNISK Unmodified 2416.1045 0.10454801 782 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 0 6 0 1 59.977 59.977 4 4.8261E-05 18080 TMT1-5 65.16 52.726 146 211.82 169.79 137.29 182.27 265.56 138 211 175 138 189 254 2 2 2 2 2 2 13343 17216 782 17012 26289 33950;33951 33951 2 SYDWSQITTVATFGK Unmodified 1702.8203 0.82025131 1553 Q01459 CTBS Di-N-acetylchitobiase yes yes 0 0 0 0 0 8 0 1 74.865 74.865 3 0.0019294 23396 TMT1-7 49.343 25.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17217 1553 17013 26290 33952 33952 1 SYDYDLIIIGGGSGGLAAAK Unmodified 1939.9891 0.98910755 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 0 6 0 1 73.94 73.94 3 2.7773E-05 23537 TMT1-5 70.094 56.667 30.764 28.189 35.47 36.725 27.063 46.132 29 29 36 36 29 44 1 1 1 1 1 1 7652.6 17218 1912 17014 26291 33953 33953 1 SYELPDGQVITIGNER Unmodified 1789.8846 0.88464248 1357;1479;1488;1952;2044;9 P60709;P63267-2;P63261;P68032;P63267;P62736;P68133;Q562R1;A5A3E0;Q6S8J3;Q9BYX7 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTA1;ACTBL2;POTEF;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, alpha skeletal muscle;Beta-actin-like protein 2;POTE ankyrin domain family member F;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 0 0 0 0 0 4.4 1.85 2 6 7 4 3 1 1 1 64.142 64.142 2;3;4 1.0476E-80 20231 TMT1-3 249.45 199.51 10737 15088 12785 10119 13123 16014 10148 15062 13115 10180 13516 15374 39 39 38 38 39 39 9914600 17219 1357;1479;1488;1952;9;2044 17015 26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304;26305;26306;26307;26308;26309;26310;26311;26312;26313;26314;26315;26316 33954;33955;33956;33957;33958;33959;33960;33961;33962;33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980;33981;33982;33983;33984;33985;33986;33987;33988;33989;33990;33991;33992;33993;33994 33973 41 SYELQESNVR Unmodified 1223.5782 0.57823012 2757 Q9NVA2 SEPT11 Septin-11 no no 0 0 0 0 0 2.5 0.5 1 1 38.705 38.705 2 1.7409E-05 10753 TMT1-2 152.27 66.528 84.627 115.95 105.66 109.92 155.29 204.5 80 116 109 109 160 196 2 2 2 2 2 2 24995 17220 2757 17016 26317;26318 33995;33996 33996 2 SYEPLEDPGVK Unmodified 1232.5925 0.5924832 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 3.5 0.5 1 1 50.972 50.972 2;3 8.6036E-07 15643 TMT1-2 144.77 113.69 514 945.3 635.49 555.12 724.05 804.42 487 931 665 555 743 774 3 3 3 3 3 3 124590 17221 1053 17017 26319;26320 33997;33998;33999 33997 3 SYFLIVR Unmodified 896.51199 0.51198846 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 9 0 1 59.561 59.561 2 0.024789 15562 TMT1-8 92.319 50.09 432.6 615.27 529.72 468.49 493.32 603.14 409 614 545 466 512 579 1 1 1 1 1 1 45985 17222 68 17018 26321 34000 34000 1 SYFSSFTDDIISQPMLK Unmodified 1977.9394 0.93938016 326 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 0 7 0 1 80.884 80.884 4 1.1717E-07 25629 TMT1-6 97.797 81.113 30.538 75.05 33.684 13.715 35.743 37.356 29 73 36 15 36 36 1 1 1 1 1 1 3120.1 17223 326 17019 26322 34001 34001 1 SYGAADHYGPDPTK Unmodified 1477.6474 0.64737232 605 P09769 FGR Tyrosine-protein kinase Fgr yes yes 0 0 0 0 0 4 0 1 38.174 38.174 3 0.0020084 9598 TMT1-3 65.773 46.195 61.339 94.708 70.08 65.42 77.016 106.53 58 94 73 65 80 102 1 1 1 1 1 1 7706.3 17224 605 17020 26323 34002 34002 1 SYGANFSWNK Unmodified 1172.5251 0.52507234 160 O43181 NDUFS4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial yes yes 0 0 0 0 0 8 0 1 54.651 54.651 2 0.00016719 15458 TMT1-7 132.32 87.97 30.644 44.045 42.133 60.103 41.437 53.184 29 44 44 58 44 51 1 1 1 1 1 1 6646.7 17225 160 17021 26324 34003 34003 1 SYGIPFIETSAK Unmodified 1311.6711 0.67106787 412 P01111;P01116-2;P01116 NRAS;KRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed yes no 0 0 0 0 0 7 0 1 65.592 65.592 3 0.00050934 19697 TMT1-6 84.718 42.323 198.58 335.78 243.97 217.89 252.3 311.53 188 332 254 217 261 299 2 2 2 2 2 2 28792 17226 412 17022 26325 34004;34005 34005 2 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR Unmodified 3444.666 0.66600585 874 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 0 5.5 0.5 1 1 77.987 77.987 4 3.1119E-06 25208 TMT1-5 55.884 45.914 109.65 68.82 87.193 50.701 49.892 76.394 103 73 87 52 51 73 3 3 3 3 2 3 26588 17227 874 17023 26326;26327 34006;34007;34008 34008 3 SYIYSGSHDGHINYWDSETGENDSFAGK Unmodified 3135.3119 0.31185126 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 4.5 0.5 1 1 54.854 54.854 4 9.5477E-37 15868 TMT1-4 136.77 125.87 168.56 177.99 193.08 167.45 190.08 210.97 159 181 196 167 196 203 2 2 2 2 2 2 47776 17228 250 17024 26328;26329 34009;34010 34010 2 SYLADNDGEIYDDIADGCIYDND Unmodified 2625.0337 0.033687072 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 1.75 0.829 2 1 1 81.635 81.635 3 1.0887E-09 26553 TMT1-1 88.983 86.406 59.399 72.048 54.686 28.816 51.655 48.628 56 72 56 30 52 47 5 4 5 4 4 5 22629 17229 126 17025 26330;26331;26332;26333 34011;34012;34013;34014;34015;34016 34015 6 SYLENPAFMLLDLK Unmodified 1652.8484 0.84838031 646 P11182 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 8 0 1 88.505 88.505 3 2.0269E-05 28568 TMT1-7 93.478 70.243 38.184 27.423 51.367 44.39 34.039 45.933 36 29 51 44 36 44 1 1 1 1 1 1 3570.1 17230 646 17026 26334 34017 34017 1 SYLTPVRDEESESQR Unmodified 1794.8384 0.83842057 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 1 3 0 1 38.525 38.525 3 0.0039756 10751 TMT1-2 63.923 58.867 38.084 58.443 41.925 44.545 55.748 83.689 36 58 44 44 58 80 1 1 1 1 1 1 11869 17231 118 17027 26335 34018 34018 1 SYLYFTQFK Unmodified 1195.5914 0.59136099 2347 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 0 0 0 9 0 2 67.33 67.33 2;3 1.0583E-14 18595 TMT1-8 186.25 119.63 207.55 283.37 223.96 202.35 328.46 338.14 196 283 232 203 334 326 2 2 2 2 2 2 80081 17232 2347 17028 26336;26337 34019;34020 34019 2 SYNDELQFLEK Unmodified 1384.6511 0.65106071 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 4.5 0.5 1 1 64.913 64.913 3 0.00075052 19845 TMT1-4 89.301 41.999 139.09 150.35 119.56 109.67 124.68 212.84 131 152 124 109 131 203 2 2 2 2 2 2 32241 17233 3001 17029 26338;26339 34021;34022 34022 2 SYPLVCIAK Unmodified 1049.558 0.55795237 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 8 0 1 57.898 57.898 2 0.00058998 16701 TMT1-7 133.55 77.832 98.421 233.47 212.44 103.44 161.19 254.44 94 229 214 109 167 243 1 1 1 1 1 1 19732 17234 853 17030 26340 34023 34023 1 SYQASPDLR Unmodified 1035.4985 0.49852324 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 3 0 1 36.305 36.305 2 0.015651 9843 TMT1-2 81.163 22.934 99.928 115.7 58.874 90.022 82.958 113.83 94 116 65 87 87 109 1 1 1 1 1 1 11964 17235 2223 17031 26341 34024 34024 1 SYQDPSNAQFLESIR Unmodified 1753.8271 0.8271276 2934 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 0 4.5 0.5 1 1 58.946 58.946 2;3 1.6797E-17 17830 TMT1-3 149.59 121.73 61.423 87.387 62.184 58.218 78.153 83.05 58 87 65 58 80 80 1 1 1 1 1 1 11999 17236 2934 17032 26342;26343 34025;34026 34025 2 SYQEHVK Unmodified 889.42938 0.42938104 994 P32456 GBP2 Interferon-induced guanylate-binding protein 2 no no 0 0 0 0 0 4 0 1 28.485 28.485 3 0.018124 5744 TMT1-3 69.905 36.784 69.208 48.779 48.958 66.196 102.69 27.984 65 51 51 65 102 29 1 1 1 1 1 1 5171.1 17237 994 17033 26344 34027 34027 1 SYQFWDTQPVPK Unmodified 1494.7143 0.71432967 959 P30419-2;P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 0 0 7 0 1 61.829 61.829 3 0.00052486 18174 TMT1-6 84.365 76.261 123.29 137.16 81.033 95.392 133.98 174.2 116 138 87 94 138 167 1 1 1 1 1 1 20908 17238 959 17034 26345 34028 34028 1 SYRDDIDLQNLIDSLQK Unmodified 2035.0222 0.02219859 2230 Q8NG11;Q8NG11-2 TSPAN14 Tetraspanin-14 yes no 0 0 0 0 1 6 0 1 75.965 75.965 4 1.5743E-06 24358 TMT1-5 91.1 63.451 68.74 78.778 102.09 71.838 99.243 120.82 65 80 102 73 102 116 1 1 1 1 1 1 10333 17239 2230 17035 26346 34029 34029 1 SYSCQVTHEGSTVEK Unmodified 1710.7519 0.75191374 22;620 P0DOX8;B9A064;P0CG04;P0DOY3;P0DOY2;P0CF74 IGLL5;IGLC1;IGLC6 Immunoglobulin lambda-like polypeptide 5;Ig lambda-1 chain C regions;Ig lambda-6 chain C region no no 0 0 0 0 0 4.67 0.943 2 1 34.945 34.945 3;4 5.1057E-19 8205 TMT1-5 157.37 143.54 315.55 433.76 339.45 261.19 262.9 401.84 298 433 350 262 276 384 3 3 3 3 3 3 49965 17240 22;620 17036 26347;26348;26349 34030;34031;34032 34032 3 SYSMIVNNLLKPISVEGSSK Unmodified 2165.1402 0.14020524 2678 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 1 9 0 2 72.959 72.959 3;4 2.6001E-12 20864 TMT1-8 86.546 71.618 77.043 131.37 104.73 110.93 104.52 128.14 73 130 109 109 109 123 2 2 2 2 2 2 11563 17241 2678 17037 26350;26351 34033;34034 34033 2 SYSPYDMLESIR Unmodified 1459.6653 0.66533057 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 4.67 1.25 1 1 1 68.857 68.857 2;3 6.6378E-07 21315 TMT1-4 119.27 94.931 298.97 529.06 370.05 273.53 381.33 469.88 283 522 384 277 392 451 4 5 5 5 5 5 53445 17242 534 17038 26352;26353;26354 34035;34036;34037;34038;34039 34036 5 SYSPYDMLESIRK Unmodified 1587.7603 0.76029359 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 1 7 0 1 63.091 63.091 3 0.0041 18694 TMT1-6 66.708 59.506 84.321 131.29 144.06 101.68 65.125 191.09 80 131 145 102 73 181 1 1 1 1 1 1 13577 17243 534 17039 26355 34040 34040 1 SYSSGGEDGYVR Unmodified 1275.5368 0.53675924 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 2.5 0.5 1 1 34.953 34.953 2 3.0331E-07 9053 TMT1-1 125.3 94.224 69.03 87.14 46.268 74.916 54.351 83.729 65 87 51 72 58 80 2 2 2 2 2 2 10986 17244 1695 17040 26356;26357 34041;34042 34041 2 SYSVGASGSSSR Unmodified 1143.5156 0.51562986 2187 Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 0 4 0 1 29.051 29.051 2 0.01445 6020 TMT1-3 70.399 63.119 15.862 29.551 14.086 6.5321 14.855 15.566 15 29 15 7 15 15 1 1 1 1 1 1 1328.6 17245 2187 17041 26358 34043 34043 1 SYTAADATLK Unmodified 1039.5186 0.51858998 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 5 0 1 44.458 44.458 3 0.00067529 11790 TMT1-4 96.015 72.41 115.43 144.24 134.88 116.8 103.44 151.62 109 145 138 116 109 145 1 1 1 1 1 1 12633 17246 2 17042 26359 34044 34044 1 SYTPGVGGDPAQLAQR Acetyl (N-term) 1657.806 0.80599822 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 1 0 0 0 0 3 0 1 55.067 55.067 2 6.626E-10 17227 TMT1-2 95.018 68.345 7.0947 29.628 44.86 20.977 21.007 30.315 7 29 44 22 22 29 1 1 1 1 1 1 24351 17247 147 17043 26360 34045 34045 1 SYVDPSTDER Unmodified 1167.5044 0.50439648 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 2 0 1 35.721 35.721 2 0.00044211 9283 TMT1-1 117.3 74.176 46.666 57.852 42.658 27.929 65.16 45.045 44 58 44 29 65 44 1 1 1 1 1 1 7667.2 17248 1833 17044 26361 34046 34046 1 SYVDTGGVSR Unmodified 1039.4934 0.49343786 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 3 0 1 35.165 35.165 2 0.02314 9382 TMT1-2 74.267 38.387 130.19 197.54 133.38 76.93 136.15 135.76 123 196 138 80 138 131 1 1 1 1 1 1 9289.1 17249 356 17045 26362 34047 34047 1 SYVITGSWNPK Unmodified 1250.6295 0.62953741 3004 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3 RABGAP1 Rab GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 57.358 57.358 3 0.0045074 14678 TMT1-8 61.353 40.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17250 3004 17046 26363 34048 34048 1 SYVTTSTR Unmodified 913.45051 0.45051041 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 5.67 1.7 1 1 1 29.582 29.582 2 0.0017957 5600 TMT1-7 84.368 52.838 177.51 225.91 90.668 117.78 191.81 226.91 167 225 102 116 196 218 2 2 2 2 2 2 64767 17251 575 17047 26364;26365;26366 34049;34050;34051 34051 3 SYYLKPSK Unmodified 984.52803 0.52803245 2855 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A yes yes 0 0 0 0 1 9 0 1 42.64 42.64 3 0.0051064 8958 TMT1-8 73.985 54.722 171.36 432.75 408.53 282.57 301.8 428.45 164 424 414 286 315 410 1 1 1 1 1 1 35980 17252 2855 17048 26367 34052 34052 1 TAAAAAEHSQR Unmodified 1111.537 0.53703401 162 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 0 0 2.5 0.5 1 1 18.717 18.717 3 4.4886E-07 3327 TMT1-1 132.62 118.59 13.783 16.932 13.578 10.879 17.797 15.482 13 17 14 11 18 15 3 3 3 3 3 3 4888.4 17253 162 17049 26368;26369 34053;34054;34055 34053 3 TAAAVAAQSGILDR Unmodified 1342.7205 0.72047768 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 5.67 0.471 1 2 49.006 49.006 2;3 1.1879E-21 13769 TMT1-5 171.99 127.01 246.4 368.97 293.16 278.14 321.75 279.7 233 367 304 276 329 271 2 2 2 2 2 2 44024 17254 3063 17050 26370;26371;26372 34056;34057;34058 34058 3 TAADELEAFLGGGAPGGR Unmodified 1687.8166 0.81656291 1931 Q3YEC7-2;Q3YEC7 RABL6 Rab-like protein 6 yes no 0 0 0 0 0 5 0 1 76.674 76.674 3 1.4227E-06 24448 TMT1-4 89.866 75.447 7.1993 38.553 19.716 39.024 12.848 30.547 7 37 22 37 15 29 1 1 1 1 1 1 6612.6 17255 1931 17051 26373 34059 34059 1 TAAELLQSQGSQAGGSQTLK Unmodified 1974.0018 0.0017974991 1752 Q14141-2;Q14141-4;Q14141 SEPT6 Septin-6 yes no 0 0 0 0 0 6 0 1 53.177 53.177 4 1.9421E-05 15392 TMT1-5 71.136 52.54 130.04 204.68 152.25 178.13 158.42 235.33 123 203 160 174 167 225 1 1 1 1 1 1 17735 17256 1752 17052 26374 34060 34060 1 TAAENAEKVEDELK Unmodified 1545.7522 0.75223132 3041 Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5;Q9Y608-3 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 0 1 3 0 2 50.028 50.028 3;4 2.517E-07 15284 TMT1-2 107.61 63.098 161.24 262.33 269.39 114.78 191.44 241.85 153 261 269 123 196 232 2 2 2 2 2 2 18859 17257 3041 17053 26375;26376 34061;34062 34062 2 TAAESFK Unmodified 752.37047 0.37046918 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 5 0 2 38.479 38.479 2;3 0.0034955 9441 TMT1-4 139.31 69.881 1361.4 2022.9 1749.2 1357.5 1779.3 2324.3 1288 2015 1791 1368 1837 2228 2 2 2 2 2 2 135610 17258 530 17055 26377;26378 34063;34064 34063 2 TAAFLLPILSQIYSDGPGEALR Unmodified 2331.2474 0.2474475 82 O00571-2;O00571 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 0 9 0 1 97.21 97.21 3 1.9604E-16 29967 TMT1-8 97.69 78.654 14.686 21.783 37.975 15.217 29.355 38.604 14 22 37 15 30 37 2 2 2 1 2 2 16584 17259 82 17056 26379 34065;34066 34065 2 TAAGSAVSICQHSR Unmodified 1443.6889 0.68885998 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 6 0 1 29.82 29.82 3 0.0010241 6221 TMT1-5 71.513 55.289 15.742 36.773 28.113 21.976 20.961 30.316 15 36 29 22 22 29 1 1 1 1 1 1 1353.9 17260 1105 17057 26380 34067 34067 1 TAAVANSMNYLTK Unmodified 1382.6864 0.68640036 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 8 0 2 56.124 56.124 2;3 0.000122 16056 TMT1-7 102.33 69.917 146.32 204.09 121.81 131.66 168.69 211.58 138 203 130 130 174 203 2 2 2 2 2 2 19914 17261 2789 17058 26381;26382 34068;34069 34069 2 TAAVCVAK Unmodified 818.43202 0.43202358 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 7 0 1 39.283 39.283 2 0.0029936 9280 TMT1-6 133.81 68.775 145.59 265.74 192.29 191.08 214.38 202.82 138 262 201 189 220 196 1 1 1 1 1 1 23761 17262 1467;1637 17059 26383 34070 34070 1 TAAYVNAIEK Unmodified 1078.5659 0.56587452 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 5 0 1 49.336 49.336 2 0.0060072 13758 TMT1-4 90.05 67.902 115.13 197.39 138.98 123.23 155.48 181.05 109 195 145 123 160 174 1 1 1 1 1 1 12982 17263 387 17060 26384 34071 34071 1 TACGAPSGICLQVK Unmodified 1460.7116 0.71156925 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7.5 0.5 1 1 52.396 52.396 2;3 1.2898E-16 14442 TMT1-6 136.96 92.647 115.23 167.43 148.67 116.1 97.207 120.88 109 167 152 116 102 116 1 1 1 1 1 1 13232 17264 856 17061 26385;26386 34072;34073 34072 2 TADDPSLSLIK Unmodified 1158.6132 0.61321864 1063 P39656;P39656-3 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 5 0 1 57.62 57.62 3 0.00029504 16931 TMT1-4 97.734 32.233 138.61 172.75 181.93 112.59 178.18 174 131 174 183 116 181 168 1 1 1 1 1 1 44958 17265 1063 17062 26387 34074 34074 1 TADGIVSHLK Unmodified 1039.5662 0.56620887 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5 2.94 1 1 1 44.903 44.903 3 0.00011313 11955 TMT1-5 112.93 49.85 2384.9 3291.9 2864 2172.1 3109.9 3121 2254 3290 2930 2197 3171 3011 5 5 5 5 5 5 330470 17266 955 17063 26388;26389;26390 34075;34076;34077;34078;34079 34076 5 TADGIVSHLKK Unmodified 1167.6612 0.66117189 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 7.5 0.5 1 1 43.142 43.142 4 3.1092E-05 10836 TMT1-7 109.24 81.9 2384.7 4034.2 2630.3 2143.3 2359.9 3709.5 2256 3984 2754 2145 2472 3543 3 3 3 3 3 3 217100 17267 955 17064 26391;26392 34080;34081;34082 34082 3 TADKIEGFLDIMEIK Unmodified 1721.891 0.89097341 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 1 7 0 1 80.189 80.189 4 0.00069573 25369 TMT1-6 73.386 54.311 15.709 45.313 26.543 45.718 42.098 53.165 15 44 29 44 44 51 1 1 1 1 1 1 2753.9 17268 750 17065 26393 34083 34083 1 TAEAGGVTGK Unmodified 889.45051 0.45051041 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 33.461 33.461 3 0.00062871 7686 TMT1-3 67.334 27.289 122.75 193.94 123.94 124.55 133.19 158.23 116 192 131 123 138 152 1 1 1 1 1 1 11667 17269 606 17066 26394;26395 34084;34085 34084 2 TAEAQLAYELQGAR Unmodified 1519.7631 0.76307078 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 4 0 1 55.423 55.423 3 2.2864E-05 16422 TMT1-3 92.063 62.374 46.626 57.74 49.507 44.353 41.904 60.632 44 58 51 44 44 58 1 1 1 1 1 1 12691 17270 1767 17067 26396 34086 34086 1 TAECETSEADNILLAGHLR Unmodified 2098.9953 0.99533191 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 3 0 1 54.949 54.949 3 1.5892E-23 17222 TMT1-2 136.36 128.71 38.283 35.252 28.136 20.974 74.149 36.26 36 36 29 22 73 36 1 1 1 1 1 1 6871.9 17271 2940 17068 26397 34087 34087 1 TAEELMNFSK Unmodified 1168.5434 0.54342452 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 6 0 1 59.318 59.318 2 0.00023659 17820 TMT1-5 127.42 106.52 77.101 116.42 107.79 62.323 122.18 105.25 73 116 109 65 123 102 1 1 1 1 1 1 12545 17272 1232 17069 26398 34088 34088 1 TAELSPFIVFIAPTDQGTQTEALQQLQK Unmodified 3073.5972 0.59718123 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 7 0 1 87.601 87.601 4 8.2092E-12 28216 TMT1-6 83.701 70.899 46.361 65.636 87.459 80.491 92.337 66.655 44 66 88 80 94 65 2 2 2 2 2 2 23789 17273 1534 17070 26399 34089;34090 34090 2 TAESQTPTPSATSFFSGK Unmodified 1842.8636 0.86357268 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 7 0 1 57.707 57.707 3 0.00061768 16569 TMT1-6 50.397 32.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17274 1319 17071 26400 34091 34091 1 TAFDDAIAELDTLNEDSYK Unmodified 2129.9641 0.96407459 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 3.75 0.829 2 1 1 85.805 85.805 3;4 2.4736E-45 28252 TMT1-3 189.59 179.94 115.58 129.57 120.97 108.61 176.52 166.59 109 131 124 109 179 161 4 4 4 4 4 4 36210 17275 1411 17072 26401;26402;26403;26404 34092;34093;34094;34095;34096 34095 5 TAFDDAIAELDTLNEDSYKDSTLIMQLLR Oxidation (M) 3316.6021 0.60206819 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 1 0 1 6 0 1 99.86 99.86 4 1.9665E-05 33134 TMT1-5 55.67 43.928 0 23.165 14.538 6.7845 0 23.452 0 22 15 7 0 22 0 1 1 1 0 1 1540 17276 1411 17073 26405 34097 34097 231 1 TAFDEAIAELDTLNEDSYK Unmodified 2143.9797 0.97972465 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 4 0.707 1 2 1 86.703 86.703 3;4 1.619E-17 28678 TMT1-3 122.01 107.85 177.53 164.07 139.78 159.78 206.25 207.31 167 167 142 154 211 200 7 6 6 6 7 7 43178 17277 909 17074 26406;26407;26408;26409 34098;34099;34100;34101;34102;34103;34104 34101 7 TAFDEAIAELDTLNEDSYKDSTLIMQLLR Unmodified 3314.6228 0.62280364 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 1 7 0 1 104.85 104.85 4 0.00029237 33538 TMT1-6 49.186 39.559 0 0 0 4.2454 6.7309 11.534 0 0 0 4 7 11 0 0 0 1 1 1 650.56 17278 909 17075 26410 34105 34105 1 TAFDEAIAELDTLNEESYK Unmodified 2157.9954 0.99537472 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 4 0.707 1 2 1 86.944 86.944 3;4 1.1649E-30 29131 TMT1-2 147.09 122.55 215.15 287.44 204.43 207.93 326.39 268.91 203 287 211 207 330 261 7 7 6 7 7 7 87358 17279 984 17076 26411;26412;26413;26414 34106;34107;34108;34109;34110;34111;34112 34106 7 TAFDEAIAELDTLNEESYKDSTLIMQLLR Unmodified 3328.6385 0.6384537 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 1 6 0 1 106.52 106.52 4 0.00045756 34213 TMT1-5 46.296 35.967 2.0482 7.1363 10.382 0 4.8687 10.521 2 7 10 0 5 10 1 1 1 0 1 1 1153.4 17280 984 17077 26415 34113 34113 1 TAFDEAIAELDTLSEESYK Unmodified 2130.9845 0.98447568 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 0 3.5 1.26 1 1 3 1 89.363 89.363 3;4 3.6811E-31 30445 TMT1-3 152.32 110.4 914.95 1193.9 1205.8 949.17 1211.2 1107.1 865 1199 1224 955 1236 1071 14 14 14 14 14 14 348260 17281 1471 17078 26416;26417;26418;26419;26420;26421 34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126;34127 34123 14 TAFDEAIAELDTLSEESYKDSTLIMQLLR Oxidation (M) 3317.6225 0.62246929 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 1 0 1 6 0 1 106.85 106.85 4 0.00065507 34212 TMT1-5 46.296 40.069 10.609 14.04 8.4377 9.0794 13.545 19.867 10 14 9 9 14 19 2 2 2 2 2 2 1561.9 17282 1471 17079 26422 34128;34129 34128 237 2 TAFHQEQGHQLLK Unmodified 1535.7845 0.78447492 1245 P51580 TPMT Thiopurine S-methyltransferase yes yes 0 0 0 0 0 6 0 1 35.986 35.986 4 0.00019811 8557 TMT1-5 86.291 60.248 184.49 262.77 149.23 161.41 243.24 163.62 174 261 160 160 245 160 1 1 1 1 1 1 8171.9 17283 1245 17080 26423 34130 34130 1 TAFQEALDAAGDK Unmodified 1335.6307 0.63065962 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 0 5.5 0.5 1 1 61.204 61.204 3 4.0848E-11 18467 TMT1-4 137.81 104.58 516.03 695.32 687.54 476.11 808.4 616.53 488 697 696 487 814 600 3 3 3 3 3 3 104460 17284 632 17081 26424;26425 34131;34132;34133 34132 3 TAFQEALDAAGDKLVVVDFSATWCGPCK Unmodified 3055.4419 0.44194292 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 1 8 0 1 86.979 86.979 4 4.9017E-12 27928 TMT1-7 88.595 83.898 54.307 50.143 27.475 13.928 44.109 37.117 51 51 29 15 44 36 1 1 1 1 1 1 7379.1 17285 632 17082 26426 34134 34134 1 TAFYLAEFFVNEAR Unmodified 1676.8199 0.81985737 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 0 8 0 1 87.665 87.665 3 2.7177E-08 28251 TMT1-7 115.78 103.29 30.621 59.092 33.226 45.482 33.476 60.873 29 58 36 44 36 58 1 1 1 1 1 1 12513 17286 2319 17083 26427 34135 34135 1 TAGCVTGGEEIYLLCDK Unmodified 1884.8597 0.85974963 798 P19838-2;P19838;P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 5 0 1 64.149 64.149 3 2.8225E-10 19547 TMT1-4 85.636 67.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17287 798 17084 26428 34136 34136 1 TAGPLESSETEEASQLK Unmodified 1775.8425 0.84250289 2828 Q9P2E9-3;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 0 3 0 1 51.147 51.147 3 1.0728E-05 15685 TMT1-2 84.859 60.301 30.556 51.356 50.711 27.749 49.191 83.876 29 51 51 29 51 80 1 1 1 1 1 1 7878.7 17288 2828 17085 26429 34137 34137 1 TAGTICLETFK Unmodified 1239.6169 0.61692381 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 0 7 0 1 58.909 58.909 3 0.0073961 17048 TMT1-6 64.64 55.636 146.27 173.73 156.17 154.16 141.77 143.06 138 175 161 152 147 138 1 1 1 1 1 1 17704 17289 718 17086 26430 34138 34138 1 TAGTICLETFKDFPQMGR Unmodified 2070.9867 0.98668148 718 P15170;P15170-2;P15170-3;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 1 8 0 1 66.106 66.106 3 0.00303 19951 TMT1-7 48.883 35.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17290 718 17087 26431 34139 34139 1 TAGTLFGEGFR Unmodified 1154.572 0.57202253 2761 Q9NVI7-2;Q9NVI7;Q9NVI7-3;Q5T9A4;Q5T9A4-3;Q5T9A4-2 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 0 0 0 0 0 7 0 1 56.744 56.744 2 0.0026972 16175 TMT1-6 91.658 76.068 60.933 141.07 99.097 56.036 77.191 113.99 58 138 102 58 80 109 1 1 1 1 1 1 14721 17291 2761 17088 26432 34140 34140 1 TAGWNIPMGLLYNK Unmodified 1576.8072 0.8071842 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 9 0 1 77.056 77.056 3 1.8079E-05 22425 TMT1-8 92.935 69.33 37.958 74.283 49.636 20.156 49.54 83.866 36 73 51 22 51 80 1 1 1 1 1 1 13839 17292 451 17089 26433 34141 34141 1 TAGYPNVNIHNFTTSWR Unmodified 1976.9493 0.94930842 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 56.898 56.898 3 3.0395E-10 16364 TMT1-7 113.53 101.89 61.405 79.782 71.656 50.133 71.196 83.248 58 80 73 51 73 80 1 1 1 1 1 1 10021 17293 1546 17090 26434 34142 34142 1 TAHIDVHFLK Unmodified 1179.64 0.64004252 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 7 0 1 47.367 47.367 4 3.4171E-05 12469 TMT1-6 128.03 95.715 1055.2 1197.6 1438.2 909.21 972.12 1452.9 997 1215 1438 927 1017 1389 1 1 1 1 1 1 74291 17294 856 17091 26435 34143 34143 1 TAHLGANPWR Unmodified 1121.573 0.57302558 678 P13224;P13224-2 GP1BB Platelet glycoprotein Ib beta chain yes no 0 0 0 0 0 8.5 0.5 1 1 36.853 36.853 3 6.7867E-07 8243 TMT1-7 155.06 126.88 802.58 924.49 843.43 691.87 930.46 1007.5 757 933 863 695 953 970 5 5 5 5 5 5 335790 17295 678 17092 26436;26437 34144;34145;34146;34147;34148 34144 5 TAHSLFK Unmodified 802.43374 0.43373813 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 0 8 0 1 37.131 37.131 3 0.029014 8464 TMT1-7 60.76 16.313 107.94 137.28 136.04 100.84 134.8 143.26 102 138 138 102 138 138 1 1 1 1 1 1 11186 17296 1310 17093 26438 34149 34149 1 TAIGALK Unmodified 672.41703 0.41702544 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 8 0 1 44.845 44.845 2 0.0098408 11576 TMT1-7 110.61 41.179 258.22 370.36 289.9 299.52 358 414.05 244 369 302 296 369 398 1 1 1 1 1 1 20720 17297 2930 17094 26439 34150 34150 1 TAKAEEEFNK Unmodified 1165.5615 0.56151742 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 1 5 0 1 38.883 38.883 3 0.0016249 9595 TMT1-4 92.19 51.462 282.18 478.92 318.21 219.38 170.35 441.79 267 473 331 221 187 419 1 1 1 1 1 1 20731 17298 2849 17095 26440 34151 34151 1 TALAEAELEYNPEHVSR Unmodified 1927.9276 0.92756992 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 2.5 0.5 1 1 51.447 51.447 3 1.3451E-11 15770 TMT1-2 116.82 108.43 84.793 101.3 90.178 112.79 51.547 114.72 80 102 94 109 58 109 2 2 2 2 2 2 20948 17299 2741 17096 26441;26442 34152;34153 34153 2 TALALAIAQELGSK Unmodified 1384.7926 0.79257999 2955 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 0 9 0 2 79.296 79.296 2;3 8.5583E-12 23249 TMT1-8 128.9 93.39 100.6 123.14 120.31 109.6 125.74 181.9 95 124 123 109 131 174 2 2 2 2 2 2 32356 17300 2955 17097 26443;26444 34154;34155 34154 2 TALALEVGDIVK Unmodified 1227.7075 0.70745338 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 6 0 1 68.491 68.491 2 4.9028E-25 21409 TMT1-5 196.76 132.05 223.01 338.81 282.35 248.21 262.19 348.56 211 337 291 247 273 334 2 2 2 2 2 2 52835 17301 1127 17098 26445 34156;34157 34156 2 TALDAFGR Unmodified 849.43447 0.43446642 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 6 0 1 48.023 48.023 2 0.0064426 13337 TMT1-5 105.14 65.038 161.28 164.05 165.39 128.57 252.85 201.72 152 167 168 131 254 196 1 1 1 1 1 1 27592 17302 1250 17099 26446 34158 34158 1 TALEEEIK Unmodified 931.48623 0.48622722 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 2.5 0.5 1 1 48.41 48.41 2 0.0044478 14334 TMT1-1 124.98 49.874 314.44 414.31 361.46 303.39 448.54 422.13 297 415 371 305 456 408 3 3 3 3 3 3 57732 17303 1723 17100 26447;26448 34159;34160;34161 34159 3 TALEEQLSR Unmodified 1045.5404 0.54038805 2306 Q92614-2;Q92614-3;Q92614-4;Q92614;Q92614-5 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 3.5 0.5 1 1 43.082 43.082 2 0.00079986 12509 TMT1-2 128.6 104.83 185.61 215.33 182.19 189.82 255.49 256.01 175 217 189 188 261 247 2 2 2 2 2 2 29194 17304 2306 17101 26449;26450 34162;34163 34162 2 TALGVAELTVTDLFR Unmodified 1604.8774 0.87737225 2222 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 0 7 0 1 87.098 87.098 3 0.00095164 27935 TMT1-6 68.919 55.24 15.934 14.642 14.598 15.12 21.533 22.838 15 15 15 15 22 22 1 1 1 1 1 1 5683.2 17305 2222 17102 26451 34164 34164 1 TALHGVK Unmodified 724.42317 0.42317345 2897 Q9UKV3-5;Q9UKV3;Q9UKV3-3;Q9UKV3-2 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 7.5 0.5 1 1 31.157 31.157 3 0.033552 6131 TMT1-7 57.559 46.686 122.42 204.88 171.01 121.84 186.17 172.71 116 203 175 124 189 167 2 2 2 2 2 2 10283 17306 2897 17103 26452;26453 34165;34166 34166 2 TALIHDGLAR Unmodified 1065.5931 0.59309232 884 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 0 6 0 1 38.904 38.904 3 0.00032356 9689 TMT1-5 101.82 60.315 85.287 62.746 39.694 83.493 84.064 90.343 80 65 44 80 87 87 1 1 1 1 1 1 97586 17307 884 17104 26454 34167 34167 1 TALLDAAGVASLLTTAEVVVTEIPKEEK Unmodified 2867.5743 0.57432053 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 7.5 0.5 1 1 100.78 100.78 5 2.3287E-23 32779 TMT1-6 115.63 105 82.638 139.68 94.591 100.85 149.65 106.59 78 138 97 100 151 104 4 5 4 5 5 5 6985.9 17308 638 17105 26455;26456 34168;34169;34170;34171;34172 34169 5 TALPAQSAATLPAR Unmodified 1366.7569 0.75686319 1546 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 0 7 0 1 45.223 45.223 2 6.3556E-06 11635 TMT1-6 87.719 50.528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17309 1546 17106 26457 34173 34173 1 TALPTSGSSAGELELLAGEVPAR Unmodified 2225.1539 0.15394104 3058 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 EPN1 Epsin-1 yes no 0 0 0 0 0 4.5 0.5 1 1 70.014 70.014 3 9.2361E-13 21838 TMT1-4 94.671 76.97 46.521 81.191 47.376 60.619 55.522 68.772 44 80 51 59 58 66 2 2 2 2 2 2 10026 17310 3058 17107 26458;26459 34174;34175 34175 2 TALVERDDFSSGTSSR Unmodified 1726.8122 0.81220581 1112 P43304 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 0 0 0 0 1 4 0 1 39.726 39.726 3 9.9444E-06 10224 TMT1-3 90.453 72.04 77.126 101.38 116.28 61.954 114.87 105.45 73 102 116 65 116 102 1 1 1 1 1 1 13213 17311 1112 17108 26460 34176 34176 1 TAMNVNDLFLAIAK Unmodified 1519.8068 0.80684985 1371 P61020;P61020-2 RAB5B Ras-related protein Rab-5B yes no 0 0 0 0 0 9 0 1 81.468 81.468 2 5.6822E-12 24118 TMT1-8 131.13 100.06 30.695 51.74 27.156 21.615 43.206 53.133 29 51 29 22 44 51 1 1 1 1 1 1 5106 17312 1371 17109 26461 34177 34177 1 TAMNVNEIFMAIAK Unmodified 1551.7789 0.77892054 1236 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 0 9 0 1 80.821 80.821 3 1.8359E-10 23870 TMT1-8 118.13 95.249 68.718 102.46 85.791 41.514 77.859 113.97 65 102 87 44 80 109 1 1 1 1 1 1 13299 17313 1236 17110 26462 34178 34178 1 TAMSLLWK Unmodified 948.51027 0.5102739 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 9 0 1 66.839 66.839 2 0.0025819 18381 TMT1-8 133.55 74.303 115.16 151.05 174.19 99.602 79.879 190.67 109 152 174 102 87 181 1 1 1 1 1 1 13417 17314 853 17111 26463 34179 34179 1 TANDMIHAENMR Unmodified 1401.6129 0.61291784 894 P26038 MSN Moesin yes yes 0 0 0 0 0 4 0 1 37.16 37.16 3 0.00091893 9198 TMT1-3 78.486 69.887 77.044 140.01 97.319 95.544 74.312 144.99 73 138 102 94 80 138 1 1 1 1 1 1 11466 17315 894 17112 26464 34180 34180 1 TAPFDSR Unmodified 792.37662 0.37661719 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 0 4.5 0.5 1 1 34.511 34.511 2 0.0099055 7876 TMT1-4 110.34 52.885 460.73 505.9 402.99 372.94 279.78 552.73 434 511 418 368 302 526 2 2 2 2 2 2 31625 17316 712 17113 26465;26466 34181;34182 34182 2 TAPLLLSYYLIK Unmodified 1393.8221 0.82208921 1641 Q12769 NUP160 Nuclear pore complex protein Nup160 yes yes 0 0 0 0 0 9 0 1 82.726 82.726 3 1.2017E-05 24645 TMT1-8 100.55 75.699 54.313 50.16 26.441 37.12 34.667 37.387 51 51 29 36 36 36 1 1 1 1 1 1 3114.4 17317 1641 17114 26467 34183 34183 1 TAPLTPTSR Unmodified 942.51345 0.51344502 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 33.886 33.886 2 0.00042098 7658 TMT1-5 138.26 86.829 359.58 264.46 296.32 238 295.9 355.06 338 276 300 239 305 341 4 4 4 4 4 4 35737 17318 2344 17115 26468;26469;26470;26471 34184;34185;34186;34187;34188 34185 5 TAPTVIT Unmodified 701.39596 0.39595564 1043 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 4 0 1 46.201 46.201 2 0.038366 12750 TMT1-3 86.935 71.714 84.69 108.57 101.27 48.244 77.806 106.51 80 109 102 51 80 102 1 1 1 1 1 1 18052 17319 1043 17116 26472 34189 34189 1 TAPYVVTGSVDQTVK Unmodified 1563.8144 0.81443765 1107 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 0 0 6 0 1 52.663 52.663 2 6.6328E-35 15199 TMT1-5 203.61 162.88 53.793 72.458 94.925 48.597 79.146 67.032 51 73 94 51 80 65 1 1 1 1 1 1 13964 17320 1107 17117 26473 34190 34190 1 TAQAAAALR Unmodified 871.48756 0.48756462 1242 P51570;P51570-2 GALK1 Galactokinase yes no 0 0 0 0 0 5 0 1 33.157 33.157 2 0.014573 7359 TMT1-4 82.645 36.927 53.851 80.175 78.581 65.035 70.511 83.268 51 80 80 65 73 80 1 1 1 1 1 1 6950 17321 1242 17118 26474 34191 34191 1 TAQALSSGSGSQETK Unmodified 1450.69 0.68996541 367 O95747 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 0 0 0 0 0 5 0 1 34.98 34.98 3 6.9297E-08 8063 TMT1-4 111.03 80.593 68.677 102.35 92.708 56.407 77.724 97.986 65 102 94 58 80 94 1 1 1 1 1 1 8843.8 17322 367 17119 26475 34192 34192 1 TAQEAFESVVEYFGENPK Unmodified 2043.9426 0.94255129 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 5.67 0.471 1 2 83.934 83.934 3;4 1.2849E-14 27445 TMT1-5 126.19 118.2 239.92 231.46 237.07 144.38 235.6 256.58 226 233 239 147 240 247 7 6 7 6 7 7 21375 17323 356 17120 26476;26477;26478 34193;34194;34195;34196;34197;34198;34199 34196 7 TAQEVETYRR Unmodified 1251.6208 0.62076364 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 1 3 0 1 29.187 29.187 3 0.0005005 7006 TMT1-2 102.05 69.049 77.676 62.981 56.304 51.222 61.964 106.96 73 65 58 51 65 102 1 1 1 1 1 1 6008.9 17324 764 17121 26479 34200 34200 1 TAQGSLSLK Unmodified 903.50255 0.50254598 145 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 0 7 0 1 43.517 43.517 2 0.0015388 10961 TMT1-6 118.03 46.691 169.67 198.53 169.07 144.34 216.56 140.93 160 200 174 145 218 138 1 1 1 1 1 1 14974 17325 145 17122 26480 34201 34201 1 TAQNLSIFLGSFR Unmodified 1452.7725 0.77251325 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 9 0 1 73.505 73.505 3 4.9067E-05 21114 TMT1-8 94.551 55.677 99.699 115.06 97.999 111.31 105.51 129.17 94 116 102 109 110 124 2 2 2 2 2 2 32537 17326 228 17123 26481 34202;34203 34203 2 TASDFITK Unmodified 881.44945 0.44944778 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 4.67 2.62 1 1 1 49.102 49.102 2 7.4135E-05 13712 TMT1-5 157.33 87.331 4325.8 5713.9 5895.6 4086.4 5047.5 6425.7 4091 5737 5954 4147 5216 6163 4 4 4 4 4 4 947460 + 17327 506 17124 26482;26483;26484 34204;34205;34206;34207 34206 4 TASEGSEQPK Unmodified 1032.4724 0.47236807 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 2.5 0.5 1 1 27.501 27.501 3 0.0057573 6302 TMT1-2 70.908 53.177 85.127 55.822 72.587 58.824 71.09 74.723 80 59 73 59 73 72 2 2 2 2 2 2 5051.6 17328 2849 17125 26485;26486 34208;34209 34209 2 TASEMVLADDNFSTIVAAVEEGR Unmodified 2424.1479 0.14786939 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 4 0 2 86.705 86.705 3;4 5.9532E-13 28522 TMT1-3 98.121 84.289 15.983 37.7 35.315 29.057 28.462 46.092 15 37 36 29 30 44 1 2 2 2 2 2 14806 17329 748 17126 26487;26488 34210;34211 34210 2 TASGDYIDSSWELR Unmodified 1598.7213 0.72126554 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 3.5 1.5 1 2 2 1 59.687 59.687 2;3 2.3048E-79 18128 TMT1-3 248.05 192.4 705.81 810.56 793.17 648.55 719.62 930.34 666 819 808 649 747 892 7 7 7 7 7 7 993330 17330 2112 17127 26489;26490;26491;26492;26493;26494 34212;34213;34214;34215;34216;34217;34218 34217 7 TASLEELR Unmodified 917.48181 0.48181054 1542 Q00722-3;Q00722-2;Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 yes no 0 0 0 0 0 3 0 1 43.333 43.333 2 0.018154 12585 TMT1-2 90.308 20.404 77.323 109.49 76.352 72.934 122.5 81.784 73 109 80 73 123 80 1 1 1 1 1 1 24702 17331 1542 17128 26495 34219 34219 1 TASNIGGFNAAIK Unmodified 1262.6619 0.66190017 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 8 0 1 52.64 52.64 2 5.2295E-16 14650 TMT1-7 136.7 88.275 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17332 2631 17129 26496 34220 34220 1 TASNVEEAFINTAK Unmodified 1493.7362 0.73618733 1370 P61019;P61019-2 RAB2A Ras-related protein Rab-2A yes no 0 0 0 0 0 5 0 1 59.184 59.184 3 2.0898E-07 17640 TMT1-4 107.74 80.706 230.92 335.06 219.94 220.26 260.9 301.7 218 333 232 218 269 290 3 3 3 3 3 3 44296 17333 1370 17130 26497 34221;34222;34223 34222 3 TATAGTASPP Unmodified 872.42396 0.42396131 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 2.5 0.5 1 1 34.454 34.454 2 5.9188E-05 8804 TMT1-1 144.83 121.79 154.51 187.28 202.99 128.35 145.24 259.16 146 189 204 131 153 247 3 3 3 3 3 3 31727 17334 2482 17131 26498;26499 34224;34225;34226 34224 3 TATAVAHCK Unmodified 957.4702 0.4702 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 6 0 1 26.952 26.952 3 0.0023981 5095 TMT1-5 85.676 46.713 184.44 223.79 189.99 173.35 292.91 224.03 174 225 196 174 295 218 2 2 2 2 2 2 13293 17335 1419 17132 26500 34227;34228 34227 2 TATEEWGTEDWNEDLSETK Unmodified 2239.9393 0.9393164 1757 Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 0 3 0 1 64.508 64.508 3 2.8636E-08 20970 TMT1-2 72.359 69.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17336 1757 17133 26501 34229 34229 1 TATESFASDPILYR Unmodified 1569.7675 0.76748745 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 4.5 0.5 1 1 57.6 57.6 2 1.9311E-18 17270 TMT1-3 163.59 121.79 61.175 110.44 84.343 64.13 100.4 97.339 58 109 87 65 102 94 1 1 1 1 1 1 22824 17337 706;707 17134 26502;26503 34230;34231 34230 2 TATESFASDPILYRPVAVALDTK Unmodified 2464.285 0.28495522 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 1 7 0.816 2 2 2 70.177 70.177 3;4 7.1203E-37 22155 TMT1-5 147.93 135.63 2012.4 2784.9 2232.3 1944.4 2111.7 2763.6 1901 2780 2307 1937 2195 2649 10 10 10 10 10 10 934510 17338 706;707 17135 26504;26505;26506;26507;26508;26509 34232;34233;34234;34235;34236;34237;34238;34239;34240;34241 34233 10 TATFAISILQQIELDLK Unmodified 1903.0666 0.066629587 1358 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 0 9 0 1 101.77 101.77 3 9.4226E-11 31685 TMT1-8 105.63 75.648 15.866 68.316 50.119 44.14 51.28 31.571 15 66 52 44 52 30 1 3 3 3 3 1 3224 17339 1358 17136 26510 34242;34243;34244 34242 3 TATGLTHIIETR Unmodified 1311.7147 0.71466402 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 6 0 1 44.211 44.211 3 0.00013486 11855 TMT1-5 72.327 56.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17340 2064 17137 26511 34245 34245 1 TATKEDFLNPDVLDIFISSVQK Unmodified 2479.2846 0.28462087 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 1 8 0 1 87.846 87.846 4 7.0608E-05 28265 TMT1-7 63.869 44.32 53.796 111.32 61.435 43.662 40.873 91.576 51 109 65 44 44 87 2 2 2 2 2 2 9302.7 17341 2951 17138 26512 34246;34247 34247 2 TATLCPQSCEER Unmodified 1450.6181 0.6180628 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3.33 0.471 2 1 35.254 35.254 2;3 1.7933E-10 9457 TMT1-2 132.44 106.81 61.409 79.793 70.959 65.775 55.321 67.711 58 80 73 65 58 65 2 2 2 2 2 2 19535 17342 471 17139 26513;26514;26515 34248;34249;34250 34249 3 TATLRPYLSAVR Acetyl (N-term) 1388.7776 0.77759863 1351 P59998;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 1 0 0 0 1 7 0 1 55.804 55.804 2 7.0926E-06 15815 TMT1-6 53.751 8.6144 68.876 79.156 78.933 56.795 100.74 97.329 65 80 80 58 102 94 1 1 1 1 1 1 28593 17343 1351 17140 26516 34251 34251 1 TATPQQAQEVHEK Unmodified 1465.7161 0.71612058 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 3.12 1.45 1 2 2 2 1 30.493 30.493 3;4 2.2869E-37 6434 TMT1-3 211.15 168.36 1634.9 2278.3 1918.1 1658.1 1822.2 2167.4 1545 2275 1975 1653 1886 2082 15 15 15 15 15 15 564660 17344 1352 17141 26517;26518;26519;26520;26521;26522;26523;26524 34252;34253;34254;34255;34256;34257;34258;34259;34260;34261;34262;34263;34264;34265;34266 34262 15 TATQLAVNK Unmodified 944.5291 0.52909508 2496 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 7 0 1 41.598 41.598 2 3.5267E-28 10191 TMT1-6 210.01 98.976 137.52 248.51 300.52 238.86 179.02 315.76 131 247 302 238 192 301 1 1 1 1 1 1 21744 17345 2496 17142 26525 34267 34267 1 TATSEYQTFFNPR Unmodified 1560.7209 0.72087161 399 P00734 F2 Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain yes yes 0 0 0 0 0 6 0 1 55.832 55.832 3 0.0021811 16480 TMT1-5 68.83 56.448 85.149 62.362 63.221 65.947 70.725 75.8 80 65 65 65 73 73 1 1 1 1 1 1 6361.5 17346 399 17143 26526 34268 34268 1 TATVSSPLTSPTSPSTLSLK Unmodified 1974.0521 0.052101735 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 8 0 1 60.967 60.967 4 1.8018E-05 17960 TMT1-7 71.742 52.91 84.987 85.653 70.843 57.819 71.905 52.314 80 87 73 58 73 51 1 1 1 1 1 1 9943.3 17347 2849 17144 26527 34269 34269 1 TAVAIEK Unmodified 730.4225 0.42250475 2589 Q9BZQ8 FAM129A Protein Niban yes yes 0 0 0 0 0 6 0 1 41.342 41.342 2 0.0068239 10716 TMT1-5 78.77 18.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17348 2589 17145 26528 34270 34270 1 TAVAPIER Unmodified 855.48142 0.48141661 665;488 P05141;Q9H0C2;P12236;P12235 SLC25A5;SLC25A31;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 2.67 1.25 1 1 1 35.268 35.268 2 9.5987E-05 8396 TMT1-3 154.71 101.15 695.64 917.9 968.88 811.31 923.4 1022.6 658 922 983 811 952 984 3 3 3 3 3 3 118020 17349 488;665 17146 26529;26530;26531 34271;34272;34273 34273 3 TAVCDIPPR Unmodified 1027.5121 0.51206481 537;1493;1932 P07437;P68371;P04350;Q3ZCM7;A6NNZ2 TUBB;TUBB4B;TUBB4A;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334 no no 0 0 0 0 0 4.73 0.442 4 11 38.661 38.661 2 3.7189E-05 9364 TMT1-4 122.44 85.594 1460.8 2098.1 1754 1330.8 1673 2166.3 1381 2092 1799 1342 1729 2077 13 13 13 13 13 13 50049 17350 537;1493;1932 17147 26532;26533;26534;26535;26536;26537;26538;26539;26540;26541;26542;26543;26544;26545;26546 34274;34275;34276;34277;34278;34279;34280;34281;34282;34283;34284;34285;34286;34287;34288;34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299 34294 26 TAVDSLVAYSVK Unmodified 1251.6711 0.67106787 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 7 0 1 63.125 63.125 2 1.0076E-08 18704 TMT1-6 148.28 109.92 61.46 79.934 62.302 65.588 92.73 75.172 58 80 65 65 94 73 1 1 1 1 1 1 8946.4 17351 1609 17148 26547 34300 34300 1 TAVEDSDK Unmodified 863.38724 0.38724145 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 0 2.5 0.5 1 1 31.926 31.926 2 0.0088816 7778 TMT1-1 101.25 36.215 92.279 84.531 108.56 86.304 123.19 74.303 87 87 109 87 124 73 2 2 2 2 2 2 8825.3 17352 2662 17149 26548;26549 34301;34302 34301 2 TAVEDSDKAYMLHIGTLDK Unmodified 2106.0303 0.030320436 2662 Q9H939;Q9H939-2 PSTPIP2 Proline-serine-threonine phosphatase-interacting protein 2 yes no 0 0 0 0 1 6 0 1 57.143 57.143 4 0.00017074 16957 TMT1-5 65.097 42.223 161.2 244.76 111.28 141.51 143.08 274.14 152 242 123 138 152 261 1 1 1 1 1 1 12978 17353 2662 17150 26550 34303 34303 1 TAVETAVLLLR Unmodified 1184.7129 0.71287311 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 7.5 0.5 1 1 69.01 69.01 2 0.0079521 21110 TMT1-6 81.099 33.275 176.87 286.72 147.79 162.35 197.9 203.29 167 283 160 160 203 196 2 2 2 2 2 2 82047 17354 1178 17151 26551;26552 34304;34305 34304 2 TAVFGFETSEAK Unmodified 1285.619 0.6190323 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 6 0 1 58.011 58.011 3 6.7387E-05 17284 TMT1-5 100.93 81.353 45.945 134.63 98.852 71.893 106.57 120.62 44 131 102 73 109 116 1 1 1 1 1 1 17083 17355 1796 17152 26553 34306 34306 1 TAVFVLATLQQLEPVTGQVSVLVMCHTR Unmodified 3096.6464 0.64639681 1738 Q13838 DDX39B Spliceosome RNA helicase DDX39B yes yes 0 0 0 0 0 9 0 1 94.481 94.481 4 0.00437 29080 TMT1-8 36.092 28.981 23.45 14.14 14.26 22.517 36.108 14.96 22 15 15 22 36 15 1 1 1 1 1 1 2074.6 17356 1738 17153 26554 34307 34307 1 TAVLTLIR Unmodified 885.56475 0.56475231 274 O75410-10;O75410-5;O75410-4;O75410-6;O75410-3;O75410-7;O75410-9;O75410;O75410-2 TACC1 Transforming acidic coiled-coil-containing protein 1 yes no 0 0 0 0 0 9 0 1 57.353 57.353 2 0.0089914 14676 TMT1-8 84.368 37.705 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17357 274 17154 26555 34308 34308 1 TAVNALWGK Unmodified 958.52362 0.52361577 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 9 0 1 56.611 56.611 2 0.00099386 14329 TMT1-8 128.36 77.754 503.39 583.37 561.27 378.31 248.35 455.56 475 589 569 381 269 434 2 2 2 2 2 2 60176 17358 428 17155 26556 34309;34310 34309 2 TAVVVGTITDDVR Unmodified 1344.7249 0.72489436 1607 Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 0 4.5 0.5 1 1 55.615 55.615 2 8.8203E-21 16150 TMT1-4 147.63 85.326 116.17 83.696 62.16 57.535 114.56 120.39 109 87 65 58 116 116 1 1 1 1 1 1 18952 17359 1607 17156 26557;26558 34311;34312 34312 2 TAWLDGK Unmodified 789.4021 0.40210366 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 7 0 1 52.135 52.135 2 0.014379 14298 TMT1-6 101.99 37.152 266.27 420.08 338.26 214.63 359.37 487.57 252 417 346 221 369 467 1 1 1 1 1 1 342520 17360 858 17157 26559 34313 34313 1 TAYSYFYEAFEGYDSIDSPK Unmodified 2352.011 0.011024781 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 6 0 1 81.938 81.938 3 0.00054614 26750 TMT1-5 54.658 39.066 15.831 37.021 12.916 22.74 28.512 22.638 15 36 15 22 29 22 1 1 1 1 1 1 4200.2 17361 54 17158 26560 34314 34314 1 TCATVTIGGINIAEALVSK Unmodified 1917.0241 0.024112846 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 79.661 79.661 3 1.8326E-17 25215 TMT1-7 121.01 100.65 30.605 51.492 42.37 44.764 42.692 37.158 29 51 44 44 44 36 1 1 1 1 1 1 10356 17362 2071 17159 26561 34315 34315 1 TCAYTNHTVLPEALER Unmodified 1873.8992 0.89924668 648 P11216 PYGB Glycogen phosphorylase, brain form no no 0 0 0 0 0 4 0 1 46.781 46.781 3 3.6267E-12 12976 TMT1-3 127.29 123.18 100.63 123.24 114.49 94.367 82.501 121.3 95 124 117 94 87 116 2 2 2 2 2 2 24758 17363 648 17160 26562 34316;34317 34316 2 TCDFLPDFK Unmodified 1141.5114 0.51139611 1221 P50452;P50452-2 SERPINB8 Serpin B8 yes no 0 0 0 0 0 6 0 1 65.348 65.348 3 0.015421 20168 TMT1-5 61.398 34.069 37.964 65.664 56.003 58.867 63.224 60.024 36 65 58 58 65 58 1 1 1 1 1 1 6108.7 17364 1221 17161 26563 34318 34318 1 TCDGVQCAFEELVEK Unmodified 1783.7757 0.77568565 2700 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 4 0 1 73.213 73.213 3 3.0883E-05 23401 TMT1-3 89.358 79.828 92.381 101 77.494 57.029 92.867 82.63 87 102 80 58 94 80 1 1 1 1 1 1 17574 17365 2700 17162 26564 34319 34319 1 TCDISFSDPDDLLNFK Unmodified 1885.8404 0.8403944 1375 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 0 5 0 2 77.871 77.871 3;4 3.1285E-23 24953 TMT1-4 134.9 114.51 38.062 74.572 31.922 53.07 40.954 76.649 36 73 36 51 44 73 1 1 1 1 1 1 3799.8 17366 1375 17163 26565;26566 34320;34321 34321 2 TCDLVGEK Unmodified 920.42733 0.42733213 814 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 0 4 0 1 42.58 42.58 2 0.0042473 11314 TMT1-3 126.41 104.95 137.29 339.6 262.57 239.47 324.76 274.29 131 332 272 239 330 266 1 1 1 1 1 1 57384 17367 814 17164 26567 34322 34322 1 TCEECLK Unmodified 938.38375 0.38375275 1290 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 0 0 4 0 1 36.021 36.021 2 0.033063 8741 TMT1-3 89.298 40.795 115.39 144.13 141.77 132.22 133.61 135.83 109 145 145 131 138 131 1 1 1 1 1 1 11861 17368 1290 17165 26568 34323 34323 1 TCEEHQLCVVAVLPHILDTGAAGR Unmodified 2645.3054 0.30538986 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 6 0 1 63.72 63.72 4 7.1196E-07 19526 TMT1-5 73.435 62.446 54.01 56.872 71.648 82.016 61.354 83.529 51 58 73 80 65 80 1 1 1 1 1 1 22245 17369 1827 17166 26569 34324 34324 1 TCEESSFCK Unmodified 1146.4322 0.43215951 1792 Q14697;Q14697-2;Q14697-3 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 4 0 2 38.802 38.802 2;3 1.3345E-05 9835 TMT1-3 155.07 143.02 245.41 335.82 307.37 198.1 290.15 362.69 232 336 312 203 298 348 2 2 2 2 2 2 43223 17370 1792 17167 26570;26571 34325;34326 34326 2 TCEESSFCKR Unmodified 1302.5333 0.53327054 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 5 0 1 32.235 32.235 3 0.0001888 6944 TMT1-4 112.36 97.796 130.43 198.19 93.155 104.61 70.23 251.7 123 196 102 102 80 238 1 1 1 1 1 1 10561 17371 1792 17168 26572 34327 34327 1 TCESDTLEALLLTASER Unmodified 1907.9146 0.91462198 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 4 0 1 78.333 78.333 3 0.0054039 25359 TMT1-3 52.365 32.787 37.988 58.177 58.206 19.492 57.706 60.181 36 58 58 22 58 58 1 1 1 1 1 1 4466.3 17372 2789 17169 26573 34328 34328 1 TCFETFPDK Unmodified 1143.4907 0.49066067 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 5 0 2 53.647 53.647 2;3 0.00012037 15425 TMT1-4 149.72 127.59 207.4 271.1 258.72 313.14 255.32 309.32 196 272 268 305 268 297 2 2 2 2 2 2 30844 17373 648 17170 26574;26575 34329;34330 34330 2 TCGFDFGGNIIMFSTDK Unmodified 1908.8386 0.83862026 1695 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 0 8 0 1 78.916 78.916 3 0.0048408 24964 TMT1-7 52.731 27.411 38.152 43.521 43.195 36.131 34.163 53.391 36 44 44 36 36 51 1 1 1 1 1 1 4321.6 17374 1695 17171 26576 34331 34331 1 TCGFDFTGAVEDISK Unmodified 1645.7294 0.72938739 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 5.5 0.5 1 1 69.861 69.861 3 4.9599E-08 21781 TMT1-4 112.72 93.145 284.45 301.93 267.69 255.64 320.71 309.58 268 306 276 254 328 299 4 4 4 4 4 4 31353 17375 396 17172 26577;26578 34332;34333;34334;34335 34332 4 TCHIQECDK Unmodified 1189.4856 0.48559206 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 4 1.63 1 1 1 28.417 28.417 3 0.00032516 5706 TMT1-3 115.57 103.21 208.69 267.3 226 202.32 323.53 238.08 197 268 233 203 326 232 4 4 4 4 4 4 29836 + 17376 32;554 17173 26579;26580;26581 34336;34337;34338;34339 34337 4 TCHIQECDKR Unmodified 1345.5867 0.58670309 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 4.67 1.89 1 1 2 1 1 24.572 24.572 3;4 4.6998E-07 4265 TMT1-3 157.68 124.41 1767.6 2632.5 2028.5 1895.8 2433.7 2469.8 1671 2618 2107 1887 2491 2382 13 13 13 13 13 13 181520 + 17377 32;554 17174 26582;26583;26584;26585;26586;26587 34340;34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352 34341 13 TCIQEFTAHR Unmodified 1261.5874 0.58735502 206 O43815;O43815-2 STRN Striatin yes no 0 0 0 0 0 6 0 1 38.597 38.597 3 0.0063748 9619 TMT1-5 69.276 62.978 159.67 275.05 342.36 184.38 211.62 261.53 152 274 340 191 219 251 1 1 1 1 1 1 5449.1 17378 206 17175 26588 34353 34353 1 TCLDNLASK Unmodified 1020.491 0.49099502 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 6 0 1 48.321 48.321 2 0.00035263 13480 TMT1-5 140.16 90.204 130.31 197.86 113.6 156.21 167.98 229.73 123 196 123 152 175 220 1 1 1 1 1 1 22423 17379 1139 17176 26589 34354 34354 1 TCLLICYTTNAFPK Unmodified 1700.8266 0.82659901 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 9 0 1 70.388 70.388 3 0.00031001 19828 TMT1-8 69.258 37.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17380 1522 17177 26590 34355 34355 1 TCLLISYTTNK Unmodified 1312.6697 0.66968766 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 0 9 0 2 59.436 59.436 2;3 3.6491E-92 15475 TMT1-8 265.31 188.03 200.17 213.03 261.13 192.2 343.88 237.5 189 217 262 196 345 232 2 2 2 2 2 2 93395 17381 1363 17178 26591;26592 34356;34357 34356 2 TCLLIVFSK Unmodified 1079.6049 0.60490256 1393;556 P61586;P62745;P08134 RHOA;RHOB;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoB;Rho-related GTP-binding protein RhoC no no 0 0 0 0 0 9 0 1 72.119 72.119 2 0.00015462 20450 TMT1-8 147.51 88.303 503.34 720.46 635.05 504.69 500.92 759.62 476 719 650 505 526 726 2 2 2 2 2 2 136040 17382 1393;556 17179 26593 34358;34359 34358 2 TCLTIVQK Unmodified 961.52665 0.52665224 852 P22749-2;P22749 GNLY Granulysin yes no 0 0 0 0 0 8 0 1 49.288 49.288 2 0.00016527 13325 TMT1-7 121.62 67.462 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17383 852 17180 26594 34360 34360 1 TCPLLLR Unmodified 871.49496 0.49495818 66 O00422;O00422-2 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 0 8 0 1 48.402 48.402 2 0.0093699 12973 TMT1-7 74.439 17.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17384 66 17181 26595 34361 34361 1 TCQFLSTFK Unmodified 1130.543 0.54303059 1222 P50453 SERPINB9 Serpin B9 yes yes 0 0 0 0 0 9 0 1 59.83 59.83 3 0.0069101 15611 TMT1-8 63.624 37.026 154.17 141.92 117.5 141.37 130.81 205.2 145 145 123 138 138 196 1 1 1 1 1 1 13792 17385 1222 17182 26596 34362 34362 1 TCQSLHINEMCQER Unmodified 1804.7655 0.76547209 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 4 0 1 37.802 37.802 3 7.5224E-08 9468 TMT1-3 113.65 89.367 61.493 72.471 63.075 58.292 71.371 67.253 58 73 65 58 73 65 1 1 1 1 1 1 11148 17386 471 17183 26597 34363 34363 1 TCSTTALKK Unmodified 1008.5274 0.52738052 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 1 8 0 1 34.404 34.404 3 0.0045439 7456 TMT1-7 82.749 41.762 185.32 248 201.74 217.03 258.02 206.9 175 248 210 214 263 201 1 1 1 1 1 1 16765 17387 1970 17184 26598 34364 34364 1 TCTDIKPEWLVK Unmodified 1488.7647 0.76465068 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 1 7 0 1 57.902 57.902 3 0.0021571 16650 TMT1-6 77.26 52.325 160.63 267.99 187.65 217.74 206.76 267 152 265 198 213 216 256 1 1 1 1 1 1 15712 17388 153 17185 26599 34365 34365 1 TCVADAK Unmodified 763.35344 0.3534389 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 33.005 33.005 2 0.042562 7234 TMT1-4 85.064 12.579 108.25 90.65 123.63 78.038 108.16 66.204 102 94 123 80 109 65 1 1 1 1 1 1 12695 17389 2309 17186 26600 34366 34366 1 TCVADESAENCDK Unmodified 1497.5712 0.57117219 28 CON__P02768-1;P02768;P02768-3 ALB Serum albumin yes no 0 0 0 0 0 2 0.816 1 1 1 35.966 35.966 3 1.0924E-11 9482 TMT1-1 147.42 135.8 861.87 925.72 976.66 753.08 914.63 1173.2 813 940 989 758 946 1125 5 5 5 5 5 5 153530 + 17390 28 17187 26601;26602;26603 34367;34368;34369;34370;34371 34370 5 TCVADESHAGCEK Unmodified 1462.5817 0.58167729 29 CON__P02769 yes yes 0 0 0 0 0 3 0 1 30.256 30.256 3 4.8529E-05 7434 TMT1-2 99.011 79.433 84.025 51.679 261.24 31.585 49.821 60.406 80 58 246 44 51 58 1 1 1 1 1 1 11161 + 17391 29 17188 26604 34372 34372 1 TDAAVEMK Unmodified 863.40587 0.4058684 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 4 0 1 40.94 40.94 2 0.012344 10734 TMT1-3 96.711 19.812 115.15 182.34 148.53 99.097 188.02 149.2 109 181 152 102 189 145 1 1 1 1 1 1 12083 17392 1897 17189 26605 34373 34373 1 TDAAVSFAK Acetyl (Protein N-term) 950.47091 0.4709115 488 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 1 0 0 0 3.5 0.5 1 1 56.679 56.679 2 1.8695E-09 16918 TMT1-3 81.548 34.481 915.94 1596.5 1238.8 1003.5 1180.6 1774.2 868 1578 1279 1006 1231 1696 1 1 1 1 1 1 248350 17393 488 17190 26606;26607 34374;34375 34375 2 TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK Unmodified 3621.5867 0.58668872 2318 Q92804-2;Q92804 TAF15 TATA-binding protein-associated factor 2N yes no 0 0 0 0 0 4 0 1 82.325 82.325 5 4.4289E-11 26884 TMT1-3 74.28 69.423 15.779 29.32 28.238 29.203 43.114 45.674 15 29 29 29 44 44 1 1 1 1 1 1 6272.3 17394 2318 17191 26608 34376 34376 1 TDAGFTLR Unmodified 879.44503 0.4450311 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 2.16 1 1 1 44.704 44.704 2 0.017598 10736 TMT 1-phospho 90.709 35.105 3547.2 4428.6 4388.8 2882.8 3963.3 4368.4 3351 4456 4437 2945 4059 4204 4 4 4 4 4 4 654620 17395 776 17192 26609;26610;26611 34377;34378;34379;34380 34377 4 TDAGGEDAILQTR Unmodified 1345.6474 0.64737232 2742 Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 0 2 0 1 44.794 44.794 3 5.946E-05 12842 TMT1-1 97.551 84.138 38.172 51.133 33.325 53.119 33.931 37.408 36 51 36 51 36 36 1 1 1 1 1 1 6783.1 17396 2742 17193 26612 34381 34381 1 TDAIPGR Unmodified 728.3817 0.38170256 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 3 0 1 32.991 32.991 2 0.014761 8560 TMT1-2 101.69 66.197 77.281 101.81 89.9 119.2 118.5 136.26 73 102 94 116 123 131 1 1 1 1 1 1 14340 17397 390 17194 26613 34382 34382 1 TDAISEEK Unmodified 891.41854 0.41854158 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 0 2.5 0.5 1 1 38.376 38.376 2 0.00087897 10369 TMT1-1 147.19 106.16 454.04 726.17 619.77 432.69 658.66 527 430 721 633 441 666 512 2 2 2 2 2 2 57137 17398 2721 17195 26614;26615 34383;34384 34383 2 TDASDVKPC Unmodified 991.42806 0.42806041 441 P02749;CON__P17690 APOH Beta-2-glycoprotein 1 yes no 0 0 0 0 1 4 0 1 37.317 37.317 2 0.0063782 9261 TMT1-3 69.598 33.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17399 441 17196 26616 34385 34385 1 TDASSASSFLDSDELER Unmodified 1828.7963 0.79628098 1779 Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 0 0 0 2 0 1 58.815 58.815 3 3.735E-19 18390 TMT1-1 137.79 115.9 30.77 35.76 28.091 22.135 12.562 61.47 29 36 29 22 15 58 1 1 1 1 1 1 9817.2 17400 1779 17197 26617 34386 34386 1 TDAVDSVVR Unmodified 960.48762 0.4876242 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 2.5 0.5 1 1 41.009 41.009 2 0.0016405 11629 TMT1-2 116.37 62.597 207.64 252.35 233.71 219.55 254.66 270.96 196 254 240 218 262 261 2 2 2 2 2 2 44671 17401 2071 17198 26618;26619 34387;34388 34388 2 TDDEVVQREEEAIQLDGLNASQIR Unmodified 2727.3311 0.33113014 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 2 0 2 64.267 64.267 3;4 4.0556E-37 20507 TMT1-1 147.08 117.24 46.737 42.937 43.528 28.474 33.452 84.325 44 44 44 29 36 80 1 1 1 1 1 1 11135 17402 708 17199 26620;26621 34389;34390 34389 2 TDDIPVWDQEFLK Unmodified 1604.7722 0.77223848 1474 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 0 0 5 0 1 74.249 74.249 2 3.3652E-10 23505 TMT1-4 133.07 100.46 30.771 35.765 27.762 29.512 28.201 22.647 29 36 29 29 29 22 1 1 1 1 1 1 7716.7 17403 1474 17200 26622 34391 34391 1 TDDLGSLR Unmodified 875.43486 0.43486035 1840 Q15283-2;Q15283 RASA2 Ras GTPase-activating protein 2 yes no 0 0 0 0 0 3 0 1 41.479 41.479 2 0.022402 12011 TMT1-2 87.251 21.939 54.071 64.596 54.91 82.999 62.115 60.056 51 65 58 80 65 58 1 1 1 1 1 1 6178.6 17404 1840 17201 26623 34392 34392 1 TDDQDIYK Unmodified 996.44001 0.4400053 512 P06729 CD2 T-cell surface antigen CD2 yes yes 0 0 0 0 0 3 0 1 41.148 41.148 2 0.0012235 11765 TMT1-2 90.629 67.201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17405 512 17202 26624 34393 34393 1 TDDYLDQPCLETVNR Unmodified 1837.8152 0.81524228 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 2.67 0.471 1 2 55.275 55.275 2;3 4.1296E-11 17276 TMT1-2 126.71 113.53 161.38 156.77 154.97 178.11 150.54 251.54 152 160 160 174 160 240 3 3 3 3 3 3 74336 17406 972 17203 26625;26626;26627 34394;34395;34396 34395 3 TDDYLDQPCYETINR Unmodified 1901.8102 0.8101569 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 2.5 0.5 1 1 53.528 53.528 3 5.709E-19 16313 TMT1-1 156.2 144.83 98.844 199.03 170.43 121.09 169.43 204.1 94 196 174 123 174 196 3 3 3 3 3 3 67631 17407 1217 17204 26628;26629 34397;34398;34399 34397 3 TDEAAFQK Unmodified 908.42396 0.42396131 899 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 0 0 3 1.41 1 1 1 1 1 41.539 41.539 2 0.00027108 10509 TMT1-4 119.27 61.715 2656.9 4019 2693.8 2408 2965.7 3594.1 2510 3988 2824 2401 3059 3451 6 6 6 6 6 6 599520 17408 899 17205 26630;26631;26632;26633;26634 34400;34401;34402;34403;34404;34405;34406 34406 7 TDEFQLHTNVNDGTEFGGSIYQK Unmodified 2599.1827 0.18267499 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 5 0 1 59.987 59.987 3 8.7811E-37 17889 TMT1-4 144.77 137.5 54.136 49.669 56.485 67.743 54.681 83.72 51 51 58 66 58 80 1 1 1 1 1 1 22378 17409 833 17206 26635 34407 34407 1 TDEGHPFK Unmodified 929.4243 0.42429566 1907 Q5IS59;Q16799;Q16799-3;Q16799-2 RTN1 Reticulon-1 yes no 0 0 0 0 0 5 1 1 1 30.931 30.931 3 0.010142 6760 TMT1-3 73.931 0 323.6 350.58 318.17 266.96 372.01 353.96 305 355 326 268 379 342 3 3 3 3 3 3 35924 17410 1907 17207 26636;26637 34408;34409;34410 34409 3 TDEGIAYR Unmodified 923.43486 0.43486035 989 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 0 2 0 1 35.506 35.506 2 0.0029977 9148 TMT1-1 133.79 100.15 257.3 311.49 314.7 235.07 219.04 251.72 243 314 319 236 228 242 1 1 1 1 1 1 51389 17411 989 17208 26638 34411 34411 1 TDELLALGR Unmodified 986.53966 0.53965977 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 5 0 1 57.317 57.317 2 0.0072636 16859 TMT1-4 63.673 20.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17412 668 17209 26639 34412 34412 1 TDEQALLSSILAK Unmodified 1387.7559 0.75586013 2011 Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 0 0 0 0 0 6.5 0.5 1 1 75.894 75.894 3 0.00030155 24328 TMT1-5 84.468 75.418 122.94 175.04 108.04 142.52 99.84 222.08 116 174 116 138 109 211 2 2 2 2 2 2 21706 17413 2011 17210 26640;26641 34413;34414 34413 2 TDFDKNK Unmodified 866.4134 0.41339662 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 6 0 1 36.532 36.532 3 0.018676 8766 TMT1-5 80.067 32.129 836.7 1217.6 992.4 665.26 885.31 1109 791 1213 1016 678 912 1064 1 1 1 1 1 1 126940 17414 1164 17211 26642 34415 34415 1 TDFGSPGEPQIIFCR Unmodified 1722.8036 0.80355538 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6 0 1 63.722 63.722 2 2.6928E-07 19567 TMT1-5 112.5 89.263 46.595 65.209 48.38 59.593 48.789 52.974 44 65 51 58 51 51 1 1 1 1 1 1 14398 17415 570 17212 26643 34416 34416 1 TDFLIFDPK Unmodified 1094.5648 0.56481189 2951 Q9Y251-2;Q9Y251;Q9Y251-3;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 7 0 1 72.8 72.8 2 0.031944 22522 TMT1-6 73.233 37.038 408.02 648.54 484.58 444.11 479.42 735.72 386 643 504 441 502 703 1 1 1 1 1 1 83367 17416 2951 17213 26644 34417 34417 1 TDGCHAYLSK Unmodified 1150.5077 0.50770771 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 6 1 1 1 35.872 35.872 3 0.0020068 8343 TMT1-4 83.775 58.92 2582.4 4115.8 2872.9 2442.1 3258.1 4078.3 2442 4077 2996 2447 3356 3913 2 2 2 2 2 2 274350 17417 1555;1556 17214 26645;26646 34418;34419 34418 2 TDGDYDYLIK Acetyl (Protein N-term) 1243.5608 0.56084872 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 1 0 0 0 2.67 0.471 1 2 70.015 70.015 2 2.8152E-21 22367 TMT1-1 76.827 57.04 831.85 1216.4 1087.6 886.12 1044.3 1210 787 1213 1113 888 1077 1163 6 6 6 6 6 6 313550 17418 50 17215 26647;26648;26649 34420;34421;34422;34423;34424;34425 34420 6 TDGFGIDTCR Unmodified 1140.487 0.48697227 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 46.219 46.219 2 0.00038108 12691 TMT1-3 120.31 103.59 436.68 616.55 564.15 373.59 490.15 639.47 413 616 573 381 506 613 3 3 3 3 3 3 131310 17419 475 17216 26650;26651 34426;34427;34428 34427 3 TDICQGALGDCWLLAAIASLTLNDTLLHR Unmodified 3210.6166 0.61655324 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 9 0 1 104 104 4 1.0938E-13 32463 TMT1-8 74.029 60.157 30.692 36.623 40.375 12.417 25.442 34.452 29 37 40 14 26 33 2 2 2 2 2 2 10993 17420 536 17217 26652 34429;34430 34430 2 TDITYPAGFMDVISIDK Unmodified 1884.9179 0.91791644 1440 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 0 6.5 0.5 1 1 81.464 81.464 3 1.5025E-05 26482 TMT1-5 82.007 57.213 92.976 154.65 112.24 103.39 75.014 114.05 88 153 117 102 80 109 2 2 2 2 2 2 15927 17421 1440 17218 26653;26654 34431;34432 34431 2 TDIVAGSTIDQAVNATFAALVYR Unmodified 2395.2383 0.23833938 155 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 93.607 93.607 4 3.3494E-05 30378 TMT1-7 63.869 47.73 7.3451 15.214 14.992 6.478 14.858 15.566 7 15 15 7 15 15 1 1 1 1 1 1 1537.1 17422 155 17219 26655 34433 34433 1 TDKTLVLLMGK Unmodified 1217.7053 0.70534489 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 1 8.5 0.5 1 1 63.54 63.54 3 3.6918E-07 17126 TMT1-8 126.1 72.935 2710 4001.3 2267 2169.6 1765.8 4952.4 2557 3968 2419 2139 1946 4693 3 3 3 3 3 3 273670 17423 540 17220 26656;26657 34434;34435;34436 34435 3 TDKTLVLLMGK Oxidation (M) 1233.7003 0.70025951 540 P07737 PFN1 Profilin-1 yes yes 0 0 1 0 1 9 0 1 55.746 55.746 3 0.033774 14063 TMT1-8 43.991 20.755 184.03 292.79 200.91 175.54 141.69 268.85 174 290 210 174 152 256 1 1 1 1 1 1 20949 17424 540 17220 26658 34437 34437 99 1 TDLAAVPASR Unmodified 999.53491 0.53490874 898 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 4 0 1 40.482 40.482 2 0.0010245 10502 TMT1-3 103.88 43.05 161.63 148.83 119.53 85.546 128.72 127.44 152 152 123 87 131 123 1 1 1 1 1 1 14006 17425 898 17221 26659 34438 34438 1 TDLADKR Unmodified 817.42938 0.42938104 2733;810 P20340;P20340-2;P20340-4;Q9NRW1;Q9NRW1-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 1 5 0 1 32.028 32.028 3 0.0082544 6848 TMT1-4 92.677 36.586 759.97 1014.8 895.85 685.55 809.35 1039.7 718 1016 916 690 838 997 1 1 1 1 1 1 98176 17426 810;2733 17222 26660 34439 34439 1 TDLDLDGYVSGQEVK Unmodified 1637.7784 0.77844607 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 3.5 0.5 1 1 62.36 62.36 3 8.4851E-06 19183 TMT1-3 95.659 75.552 61.425 87.392 61.878 65.066 121.8 112.72 58 87 65 65 123 109 1 1 1 1 1 1 18000 17427 2835 17223 26661;26662 34440;34441 34441 2 TDLEELNLGPR Unmodified 1255.6408 0.64083038 1282 P53367-3;P53367-2;P53367 ARFIP1 Arfaptin-1 yes no 0 0 0 0 0 3 0 1 57.394 57.394 3 0.00041711 18221 TMT1-2 94.363 73.461 15.82 29.433 21.309 14.582 28.887 22.628 15 29 22 15 29 22 1 1 1 1 1 1 4556.7 17428 1282 17224 26663 34442 34442 1 TDLEKDIISDTSGDFR Unmodified 1810.8585 0.85848731 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 1 3 1 1 1 62.432 62.432 3 2.1068E-05 19004 TMT1-3 88.283 71.064 691.36 1136.3 781.44 547.69 1005.1 1036.3 654 1124 811 561 1019 999 3 3 3 3 3 3 141970 17429 534 17225 26664;26665 34443;34444;34445 34444 3 TDLGAAAGSK Unmodified 889.45051 0.45051041 2771 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 0 0 5 0 1 38.991 38.991 3 0.035493 9659 TMT1-4 48.741 18.931 61.397 94.867 60.349 89.337 114.67 74.546 58 94 65 87 116 73 1 1 1 1 1 1 6104.7 17430 2771 17226 26666 34446 34446 1 TDLLEEK Unmodified 846.43346 0.43346336 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 4 0 1 50.87 50.87 2 0.021743 14635 TMT1-3 96.253 0 160.48 244.93 231.41 140.9 201.79 179.73 152 244 234 145 205 174 1 1 1 1 1 1 16281 17431 1773 17227 26667 34447 34447 1 TDLLLEPYNK Unmodified 1204.634 0.63395408 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.25 1.92 1 2 1 62.821 62.821 2;3 9.4412E-21 19171 TMT1-5 199.68 142.13 3254.5 3975.5 3651.5 2978.2 3201 4082 3072 4000 3733 2979 3325 3915 6 6 6 6 6 6 781700 17432 1019 17228 26668;26669;26670;26671 34448;34449;34450;34451;34452;34453 34452 6 TDLSNVQELLQFVK Unmodified 1632.8723 0.87228688 2200 Q8NBL1 POGLUT1 Protein O-glucosyltransferase 1 yes yes 0 0 0 0 0 7 0 1 85.967 85.967 3 0.0001052 27598 TMT1-6 85.42 57.771 54.388 34.178 27.415 36.772 50.095 45.475 51 36 29 36 51 44 1 1 1 1 1 1 2884.7 17433 2200 17229 26672 34454 34454 1 TDLVPAFQNLMK Unmodified 1375.717 0.71697221 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 8.5 0.5 1 1 74.266 74.266 3 1.6612E-05 23132 TMT1-7 105.46 74.03 100.64 122.17 114.58 93.785 113.15 112.97 95 123 117 94 116 109 2 2 2 2 2 2 13071 17434 956 17230 26673;26674 34455;34456;34457 34455 3 TDMELEVLR Unmodified 1104.5485 0.5485099 674 P12955;P12955-3 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 0 3 0 1 57.606 57.606 2 0.027743 18260 TMT1-2 74.92 52.428 30.404 66.041 63.929 51.303 33.465 53.411 29 65 65 51 36 51 1 1 1 1 1 1 6181.5 17435 674 17231 26675 34458 34458 1 TDPHLCDFLETHFLDEEVK Unmodified 2344.0682 0.068162505 452 P02792 FTL Ferritin light chain yes yes 0 0 0 0 0 4 0 1 69.777 69.777 4 0.02603 22020 TMT1-3 36.744 22.131 84.618 147.23 80.599 95.97 104.66 144.12 80 145 87 94 109 138 1 1 1 1 1 1 24156 17436 452 17232 26676 34459 34459 1 TDPSILGGMIVR Unmodified 1257.6751 0.67510739 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 7 0 1 63.657 63.657 3 0.007001 18891 TMT1-6 62.705 27.984 69.094 72.207 48.186 51.967 48.077 83.908 65 73 51 51 51 80 1 1 1 1 1 1 6917.5 17437 1148 17233 26677 34460 34460 1 TDPTTLTDEEINR Unmodified 1503.7053 0.70528113 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 2 0 1 47.758 47.758 3 0.0088549 13989 TMT1-1 57.425 40.058 92.373 117.17 65.024 145.14 96.422 104.91 87 117 73 138 102 101 2 2 2 2 2 2 16287 17438 657 17234 26678 34461;34462 34461 2 TDPVDIYK Unmodified 949.47566 0.47566253 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 50.735 50.735 2 0.0019681 14534 TMT1-3 139.19 83.47 207.49 497.1 232.63 229.93 345.48 292.89 197 484 253 229 350 284 1 1 1 1 1 1 57781 17439 1139 17235 26679 34463 34463 1 TDPVPEEGEDVAATISATETLSEEEQEELRR Unmodified 3429.5907 0.59071146 1321 P55327-8;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3 TPD52 Tumor protein D52 yes no 0 0 0 0 1 2 0 1 72.761 72.761 4 9.7802E-07 23543 TMT1-1 64.733 59.246 16.02 14.88 0 23.776 14.356 7.0524 15 15 0 22 15 7 1 1 0 1 1 1 4585.5 17440 1321 17236 26680 34464 34464 1 TDQAFVTLTTNDAYAK Acetyl (Protein N-term) 1799.8578 0.85775902 1140 P46976;P46976-2;P46976-3 GYG1 Glycogenin-1 yes no 0 1 0 0 0 4 0 1 72.622 72.622 3 5.0587E-07 23209 TMT1-3 76.548 46.86 99.583 107.19 124.15 69.157 113.77 127.87 94 109 124 72 116 123 2 2 2 2 2 2 30598 17441 1140 17237 26681 34465;34466 34466 2 TDQAQDVK Unmodified 903.42977 0.42977497 1182 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 0 0 3 0 1 31.857 31.857 2 0.030617 8084 TMT1-2 81.338 25.662 77.596 71.391 62.729 65.685 86.202 51.906 73 73 65 65 87 51 1 1 1 1 1 1 5763.9 17442 1182 17238 26682 34467 34467 1 TDQAQKAEGAGDAK Unmodified 1388.6532 0.65318598 493 P05204 HMGN2 Non-histone chromosomal protein HMG-17 yes yes 0 0 0 0 1 4 0 1 32.237 32.237 3 0.027457 7234 TMT1-3 51.147 21.34 77.677 55.427 62.619 89.66 90.303 113.62 73 58 65 87 94 109 1 1 1 1 1 1 6297.5 17443 493 17239 26683 34468 34468 1 TDQVIQSLIALVNDPQPEHPLR Unmodified 2482.318 0.31798668 1489 P68036;P68036-3;P68036-2;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 0 7.5 0.5 2 2 84.392 84.392 3;4 1.0897E-45 26994 TMT1-7 155.16 140.23 117.6 167.93 109.6 141.92 184.61 130.11 111 167 117 139 187 127 5 5 5 5 5 5 126300 17444 1489 17240 26684;26685;26686;26687 34469;34470;34471;34472;34473 34472 5 TDRPLPENPYHSR Unmodified 1580.7696 0.76955314 1258 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes yes 0 0 0 0 1 4 0 1 30.769 30.769 4 0.0010483 6658 TMT1-3 76.588 55.635 37.889 81.645 55.029 59.211 48.001 76.448 36 80 58 58 51 73 1 1 1 1 1 1 5798.6 17445 1258 17241 26688 34474 34474 1 TDSDIISK Unmodified 877.43928 0.43927702 571 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' yes yes 0 0 0 0 0 4 0 1 43.943 43.943 2 0.0009959 11883 TMT1-3 99.305 30.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17446 571 17242 26689 34475 34475 1 TDSDSDLQLYK Unmodified 1283.5881 0.5881261 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 4 0 1 51.927 51.927 3 0.0014148 15021 TMT1-3 82.417 53.459 114.42 227.8 232.58 94.227 180.64 187.79 109 225 232 102 183 181 1 1 1 1 1 1 22459 17447 1552 17243 26690 34476 34476 1 TDSEKPFR Unmodified 978.47706 0.47705951 2976 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 1 5 0 1 33.852 33.852 3 0.039064 7557 TMT1-4 61.582 8.7153 84.509 139.37 105.64 78.855 121.71 96.731 80 138 109 80 123 94 1 1 1 1 1 1 9283 17448 2976 17244 26691 34477 34477 1 TDSREDEISPPPPNPVVK Unmodified 1975.9851 0.9850848 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 1 3.67 0.471 1 2 46.35 46.35 3;4 6.2215E-08 12810 TMT1-3 98.572 89.526 569.87 685.71 663.14 545.02 766.83 882.09 538 691 676 548 786 848 5 5 5 5 5 5 54979 17449 635 17245 26692;26693;26694 34478;34479;34480;34481;34482 34482 5 TDSSPNQAR Unmodified 974.44174 0.44173664 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 2 0 1 19.356 19.356 2 0.015924 3354 TMT1-1 80.787 60.791 7.4493 7.949 3.6325 4.0633 4.9017 4.1241 7 8 4 4 5 4 1 1 1 1 1 1 564.13 17450 901 17246 26695 34483 34483 1 TDTCMSSNGLLCSGR Unmodified 1657.6858 0.68582479 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 5 0 1 46.229 46.229 3 1.4747E-05 12530 TMT1-4 91.457 79.291 84.631 163.45 64.751 89.819 75.125 128.97 80 160 73 87 80 123 1 1 1 1 1 1 11479 17451 484 17247 26696 34484 34484 1 TDTESELDLISR Unmodified 1377.6624 0.66235368 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 2 0 1 56.065 56.065 2 1.641E-14 17279 TMT1-1 179.31 132.9 77.192 116.68 92.143 73.126 62.297 98.426 73 116 95 73 66 94 2 2 2 2 2 2 20218 17452 657 17248 26697 34485;34486 34485 2 TDTLEDLFPTTK Unmodified 1379.682 0.68202649 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 5.33 0.471 2 1 70.531 70.531 2;3 0.00010701 22029 TMT1-4 98.156 74.552 191.52 277.12 217.09 221.1 225.29 240.88 181 276 226 218 233 232 3 3 3 3 3 3 51648 17453 676 17249 26698;26699;26700 34487;34488;34489 34487 3 TDTVLILCR Unmodified 1089.5852 0.58522975 2678 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 0 6 0 1 55.268 55.268 2 5.7826E-26 16228 TMT1-5 178.65 102.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17454 2678 17250 26701 34490 34490 1 TDVCVFAAQEDLETMQAFAQVFNK Unmodified 2761.2728 0.27275233 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 95.748 95.748 3 0.0025935 31175 TMT1-6 33.37 21.846 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17455 2073 17251 26702 34491 34491 1 TDVLILPEEVEWIK Unmodified 1682.9131 0.91308906 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 5.5 0.5 1 1 83.743 83.743 3 6.2817E-09 27183 TMT1-4 102.73 74.095 30.741 43.235 26.593 45.695 43.162 22.22 29 43 29 44 44 22 1 1 1 1 1 1 6202.5 17456 2791 17252 26703;26704 34492;34493 34492 2 TDVNKIEEFLEEVLCPPK Unmodified 2159.082 0.082021655 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 1 6 0 2 94.744 94.744 4;5 8.2985E-06 31148 TMT1-5 81.692 60.093 61.932 109.49 138.26 93.733 99.005 98.445 59 109 138 95 102 95 3 3 3 3 3 3 12397 17457 3048 17253 26705;26706 34494;34495;34496 34494 3 TDWLDGK Unmodified 833.39193 0.3919329 958 P30405;Q9UNP9-2;Q9UNP9;Q9UNP9-3 PPIF;PPIE Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase E yes no 0 0 0 0 0 5.5 0.5 1 1 55.689 55.689 2 0.010436 16384 TMT1-5 108.09 29.591 1319.2 1718.8 1527.4 1260.9 1286.4 1882.1 1246 1723 1565 1259 1347 1800 3 3 3 3 3 3 229590 17458 958 17254 26707;26708 34497;34498;34499 34499 3 TDYIGHK Unmodified 832.40792 0.40791731 32 CON__Q28194 yes yes 0 0 0 0 0 5.75 1.3 3 1 34.92 34.92 3 0.0052284 7997 TMT1-4 92.187 53.395 926.93 1668.1 1496.2 1320 1434.8 1686 880 1650 1534 1314 1485 1620 4 4 4 4 4 4 107520 + 17459 32 17255 26709;26710;26711;26712 34500;34501;34502;34503 34501 4 TDYNASVSVPDSSGPER Unmodified 1779.7911 0.79113602 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 0 2.5 0.5 1 1 44.258 44.258 3 1.9314E-24 12701 TMT1-1 145.33 121.5 168.37 217.4 191.43 151.58 167.22 227.62 159 218 196 152 174 218 3 3 3 3 3 3 147690 17460 1409;1410 17256 26713;26714 34504;34505;34506 34504 3 TEAADLCK Unmodified 906.41168 0.41168206 730 P16070;P16070-15;P16070-5;P16070-7;P16070-3;P16070-6;P16070-4;P16070-17;P16070-9;P16070-8;P16070-16;P16070-10;P16070-11;P16070-13;P16070-14;P16070-12;P16070-18;P16070-19 CD44 CD44 antigen yes no 0 0 0 0 0 4 0 1 39.301 39.301 2 0.006494 10091 TMT1-3 104.44 59.826 177.29 217.73 135.74 161.54 220.97 202.63 167 218 145 159 225 196 2 2 2 2 2 2 35547 17461 730 17257 26715 34507;34508 34508 2 TEADVNPK Acetyl (Protein N-term) 914.43453 0.434526 1323 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 1 0 0 0 2 0 1 39.613 39.613 2 0.0031736 10818 TMT1-1 42.109 30.204 107.4 198.35 176.61 152.46 167.73 211.61 102 196 181 152 174 203 1 1 1 1 1 1 30781 17462 1323 17258 26716 34509 34509 1 TEAEIAHIALETLEGHQR Unmodified 2017.0229 0.022867292 318 O75955 FLOT1 Flotillin-1 yes yes 0 0 0 0 0 4 0 1 66.063 66.063 4 1.8232E-10 20582 TMT1-3 110.32 95.394 23.152 59.721 25.689 44.65 43.466 14.75 22 58 29 43 44 15 1 1 1 1 1 1 9961.6 17463 318 17259 26717 34510 34510 1 TEALSVIELLLK Unmodified 1327.7963 0.79626839 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 8 0 1 94.16 94.16 3 0.0001554 30659 TMT1-7 94.767 47.57 23.415 21.599 13.793 22.959 14.1 15.588 22 22 15 22 15 15 1 1 1 1 1 1 2885 17464 1994 17260 26718 34511 34511 1 TEALTSAK Unmodified 819.4338 0.43379771 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 5 0 1 38.483 38.483 2 0.00054443 9418 TMT1-4 150.4 60.725 279.68 318.16 334.1 201.03 340.47 325.01 264 322 336 208 345 314 1 1 1 1 1 1 41845 + 17465 506 17261 26719 34512 34512 1 TECALLGFVTDLK Unmodified 1465.7487 0.74866627 868 P23634-5;P23634-4;P23634-3;P23634-2;P23634-7;P23634-6;P23634-8;P23634 ATP2B4 Plasma membrane calcium-transporting ATPase 4 yes no 0 0 0 0 0 7 0 1 80.601 80.601 3 0.0024414 25499 TMT1-6 67.275 45.077 54.303 42.578 34.485 36.784 27.06 46.132 51 44 36 36 29 44 1 1 1 1 1 1 4332.6 17466 868 17262 26720 34513 34513 1 TECFITGWGETQGTFGAGLLK Unmodified 2272.0834 0.083418639 401 P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 0 0 0 8 0 2 79.314 79.314 3;4 8.9158E-19 25099 TMT1-7 97.083 81.491 68.968 79.411 63.329 42.396 102.17 74.902 65 80 65 44 102 73 1 1 1 1 1 1 6533.2 17467 401 17263 26721;26722 34514;34515 34515 2 TEDAAQELLLPESK Unmodified 1542.7777 0.77771779 1999 Q63HN8;Q63HN8-4;Q63HN8-5 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 4 0 1 62.077 62.077 3 0.00077085 19076 TMT1-3 73.834 52.881 23.008 59.32 50.276 27.622 57.332 60.192 22 58 51 29 58 58 1 1 1 1 1 1 6417.2 17468 1999 17264 26723 34516 34516 1 TEDDLVPTAPSLGTK Unmodified 1542.7777 0.77771779 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 4 0 2 58.89 58.89 2;3 1.852E-05 17755 TMT1-3 90.966 70.585 154.12 180.62 93.831 110.42 166.04 103.99 145 181 102 109 167 102 2 2 2 2 2 2 22617 17469 2922 17265 26724;26725 34517;34518 34517 2 TEDFIIDTLELR Unmodified 1463.7508 0.75077476 1558 Q01780-2;Q01780 EXOSC10 Exosome component 10 yes no 0 0 0 0 0 4 0 1 79.258 79.258 3 0.0038708 25636 TMT1-3 66.393 44.365 7.2943 6.4387 30.955 0 15.69 0 7 7 29 0 15 0 1 1 1 0 1 0 1811.6 17470 1558 17266 26726 34519 34519 1 TEDPDLPAFYFDPLINPISHR Unmodified 2456.2012 0.20122559 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 5 0 1 79.712 79.712 3 0.00019141 25660 TMT1-4 60.765 50.977 15.812 21.857 28.993 22.318 0 15.99 15 22 29 22 0 15 1 1 1 1 0 1 5613.1 17471 2028 17267 26727 34520 34520 1 TEDSGLQTQVIAAATQCALSTSQLVACTK Unmodified 3051.4853 0.4852643 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.6 2.87 1 1 2 1 85.048 85.048 4 2.6271E-24 27198 TMT1-7 112.11 92.987 1372.6 1587 1493.1 1205.2 1447.6 1702.7 1295 1602 1524 1209 1490 1636 13 13 13 13 12 13 569900 17472 3010 17268 26728;26729;26730;26731;26732 34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533 34528 13 TEEAEKTPVGSCFLAQPESGR Unmodified 2292.0692 0.069225137 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 4 0 2 49.938 49.938 3;4 7.9173E-19 14229 TMT1-3 128.66 105.19 149.06 545.39 634.48 234.86 321.05 601.66 145 532 627 255 337 573 2 2 2 2 2 2 142760 17473 565 17269 26733;26734 34534;34535 34535 2 TEEALQLYNQIIK Unmodified 1561.8352 0.83517309 323 O76094 SRP72 Signal recognition particle subunit SRP72 yes yes 0 0 0 0 0 7 0 2 72.017 72.017 2;3 0.0017546 22242 TMT1-6 83.045 57.424 84.577 124.45 106.86 71.573 98.192 151.77 80 124 109 73 102 145 2 2 2 2 2 2 12303 17474 323 17270 26735;26736 34536;34537 34537 2 TEEEEEDLPDAQTAAK Unmodified 1774.7745 0.7744829 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 0 2 0 1 46.123 46.123 3 9.8418E-20 13377 TMT1-1 154.65 146.18 130.44 135.62 144.34 108.49 108.48 229.29 123 138 146 109 116 218 2 2 2 2 2 2 24332 17475 188 17271 26737 34538;34539 34538 2 TEEEFKK Unmodified 909.44436 0.4443624 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 1 4 0 1 37.117 37.117 3 0.021724 9144 TMT1-3 75.854 21.305 1582.9 2142.2 1930.6 1495.8 2277.3 1711 1496 2144 1972 1513 2299 1666 1 1 1 1 1 1 146020 17476 955 17272 26738 34540 34540 1 TEEEPLEEPLDEALVR Unmodified 1867.9051 0.90510315 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 2 0 1 65.349 65.349 3 1.0038E-08 20915 TMT1-1 109.79 93.049 61.534 63.949 63.52 59.784 48.78 52.974 58 65 65 59 51 51 2 2 2 2 2 2 21801 17477 1081 17273 26739 34541;34542 34542 2 TEEGPTLSYGR Unmodified 1208.5673 0.56733108 1109 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 0 3 0 1 40.639 40.639 2 2.5533E-06 11532 TMT1-2 130.79 91.64 46.234 111.69 69.795 50.668 48.687 67.901 44 109 73 51 51 65 1 1 1 1 1 1 15844 17478 1109 17274 26740 34543 34543 1 TEEISEVK Unmodified 933.46549 0.46549177 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 2.5 0.5 1 1 42.697 42.697 2 0.0010914 12260 TMT1-2 101.64 38.158 76.907 100.77 153.57 100.1 118.87 151.18 73 102 152 102 123 145 1 1 1 1 1 1 12494 17479 482 17275 26741;26742 34544;34545 34545 2 TEERAELAESR Unmodified 1289.6212 0.62115757 519;521 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 2 0 1 27.255 27.255 3 0.0077392 5886 TMT1-1 70.488 30.421 23.324 21.345 29.338 14.403 12.918 61.459 22 22 29 15 15 58 1 1 1 1 1 1 4553.5 17480 519;521 17276 26743 34546 34546 1 TEEVIVIAK Acetyl (Protein N-term) 1042.591 0.59102664 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 1 0 0 0 2.5 0.5 1 1 67.159 67.159 2 1.8396E-08 21952 TMT1-2 53.166 40.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17481 187 17277 26744;26745 34547;34548 34548 2 TEFDFSDYVK Unmodified 1249.5503 0.55028404 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 5 0 1 66.954 66.954 3 0.00062226 20647 TMT1-4 96.89 70.847 54.06 64.568 56.653 43.927 41.924 60.632 51 65 58 44 44 58 1 1 1 1 1 1 7204.2 17482 817 17278 26746 34549 34549 1 TEFDREIDR Unmodified 1179.552 0.55201537 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 1 2 0 1 37.476 37.476 3 0.00033339 9914 TMT1-1 126.31 84.123 129.65 234.9 191.62 128.13 193.21 172.51 123 232 196 131 196 167 2 2 2 2 2 2 22413 17483 787 17279 26747 34550;34551 34550 2 TEFLSFMNTELAAFTK Unmodified 1848.8968 0.89678707 987 P31949 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 0 0 0 0 0 8.33 0.471 2 1 92.452 92.452 3 8.9487E-16 30003 TMT1-7 130.06 126.56 493.76 822.79 535.37 419.64 515.38 817.84 467 813 560 422 538 781 5 5 5 5 5 5 143050 17484 987 17280 26748;26749;26750 34552;34553;34554;34555;34556;34557 34552 6 TEFWLISAPGEK Acetyl (Protein N-term) 1418.7082 0.70818166 829 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 1 0 0 0 5 0 1 85.997 85.997 2 8.7444E-06 28108 TMT1-4 56.359 41.68 39.274 43.585 34.843 29.094 27.963 30.116 37 44 36 29 29 29 1 1 1 1 1 1 7661.5 17485 829 17281 26751 34558 34558 1 TEGAEATPGAQK Unmodified 1158.5517 0.55168102 1899 Q16666-3;Q16666-2;Q16666 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 0 3 0 1 32.593 32.593 3 1.7564E-05 8366 TMT1-2 104.79 62.4 92.208 100.52 106.89 102.27 151.26 88.426 87 102 109 102 152 87 1 1 1 1 1 1 12035 17486 1899 17282 26752 34559 34559 1 TEGDEEAEEEQEENLEASGDYK Unmodified 2499.9885 0.98851102 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 2 0 1 51.15 51.15 4 1.5693E-17 15350 TMT1-1 107.33 94.243 100.02 84.652 70.099 74.17 76.614 106.55 94 87 73 73 80 102 1 1 1 1 1 1 15644 17487 675 17283 26753 34560 34560 1 TEGDGVYTLNNEK Unmodified 1438.6576 0.65760265 400 P00738-2;P00738 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes no 0 0 0 0 0 3 0 1 46.257 46.257 3 0.0022914 13784 TMT1-2 68.171 60.391 37.957 65.647 57.066 35.028 48.856 83.886 36 65 58 36 51 80 1 1 1 1 1 1 9543 17488 400 17284 26754 34561 34561 1 TEGLSVLSQAMAVIK Unmodified 1545.8436 0.84362928 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 0 9 0 1 80.604 80.604 3 5.6558E-11 23869 TMT1-8 111.12 84.992 69.071 87.252 39.383 59.312 92.233 128.49 65 87 44 58 95 123 2 2 2 2 2 2 10414 17489 492 17285 26755 34562;34563 34563 2 TEHAEFLHCK Unmodified 1270.5765 0.57645598 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 5 0 1 33.722 33.722 4 0.0015358 7527 TMT1-4 84.17 38.255 130.02 165.77 188.17 128.61 178.28 149.48 123 167 189 131 181 145 1 1 1 1 1 1 12361 17490 1226 17286 26756 34564 34564 1 TEHINIHQLR Unmodified 1259.6735 0.67346791 701 P14317;P14317-2 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 0 0 5.5 0.5 1 1 31.87 31.87 3;4 4.0562E-05 6940 TMT1-5 125.97 94.538 192.22 246.68 125.59 178.59 218.37 225.09 181 246 138 174 224 217 2 2 2 2 2 2 35408 17491 701 17287 26757;26758 34565;34566 34566 2 TEHLTEEEK Unmodified 1114.5142 0.51423288 2155 Q8IZ07 ANKRD13A Ankyrin repeat domain-containing protein 13A yes yes 0 0 0 0 0 2 0 1 31.887 31.887 3 0.0088643 7744 TMT1-1 44.765 18.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17492 2155 17288 26759 34567 34567 1 TEIEDFPR Unmodified 1005.4767 0.47672516 523 P06865 HEXA Beta-hexosaminidase subunit alpha yes yes 0 0 0 0 0 2 0 1 47.664 47.664 2 0.0074043 13995 TMT1-1 69.628 41.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17493 523 17289 26760 34568 34568 1 TEIELSYAK Unmodified 1052.539 0.53899107 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 5 0 1 52.668 52.668 2 0.00016745 15055 TMT1-4 147.51 60.884 92.455 116.32 51.977 74.827 99.105 120.83 87 116 58 73 102 116 1 1 1 1 1 1 8991.7 17494 2449 17290 26761 34569 34569 1 TEISVESK Unmodified 891.45493 0.45492709 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 3 1 1 1 41.608 41.608 2 7.1181E-13 10821 TMT1-3 190.26 101.12 565.71 777.04 563.28 599.54 799.32 776.69 534 775 591 593 816 750 3 3 3 3 3 3 109070 17495 2013 17291 26762;26763 34570;34571;34572 34571 3 TELADKVTK Unmodified 1003.555 0.55497548 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 6 0 1 42.891 42.891 3 0.00052546 11340 TMT1-5 118.4 78.052 2566.4 3601.1 2027.2 1866 1464.1 4823.4 2420 3579 2162 1843 1640 4564 1 1 1 1 1 1 136250 17496 1019 17292 26764 34573 34573 1 TELATQEK Unmodified 918.46583 0.46582612 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 36.749 36.749 2 0.0056167 9029 TMT1-3 116.37 75.069 154 165.18 126.95 92.051 166.1 157.29 145 167 131 94 168 152 1 1 1 1 1 1 14383 17497 1833 17293 26765 34574 34574 1 TELATYPGIIVSNICPGPVQSNIVENSLAGEVTK Unmodified 3569.8287 0.82871409 2987 Q9Y394-2;Q9Y394 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 0 0 0 0 0 6 0 1 83.528 83.528 4 2.178E-07 27349 TMT1-5 56.041 45.334 39.518 20.519 13.441 30.499 21.082 15.388 37 22 15 29 22 15 1 1 1 1 1 1 5299.8 17498 2987 17294 26766 34575 34575 1 TELDAHLENLLSK Unmodified 1481.7726 0.77257283 2984 Q9Y371;Q9Y371-2 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 0 5 0 1 63.929 63.929 3 5.7975E-06 19460 TMT1-4 86.467 55.639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17499 2984 17295 26767 34576 34576 1 TELDILK Unmodified 830.47493 0.47493425 1992 Q5VWZ2;Q5VWZ2-2 LYPLAL1 Lysophospholipase-like protein 1 yes no 0 0 0 0 0 5 0 1 57.882 57.882 2 0.033063 17118 TMT1-4 89.298 0.15618 123.12 144.24 103.75 110.31 140.63 174.01 116 145 109 109 145 167 1 1 1 1 1 1 18405 17500 1992 17296 26768 34577 34577 1 TELDSFLIEITANILK Unmodified 1818.9979 0.99788132 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 8 0 1 107.62 107.62 3 5.4872E-06 33817 TMT1-7 90.476 70.898 2.0786 5.0622 7.039 4.9561 4.7507 7.3264 2 5 7 5 5 7 1 1 1 1 1 1 963.19 17501 1260 17297 26769 34578 34578 1 TELEDTLDSTAAQQELR Unmodified 1918.912 0.91197944 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2 0.816 1 1 1 58.963 58.963 3 1.2713E-62 18546 TMT1-1 227.73 192.07 220.76 277.13 353.19 223.07 328.55 338.14 209 280 352 229 335 326 5 5 5 5 5 5 156520 17502 1019 17298 26770;26771;26772 34579;34580;34581;34582;34583 34581 5 TELFVHAFK Unmodified 1090.5811 0.58113065 141 O15327 INPP4B Type II inositol 3,4-bisphosphate 4-phosphatase yes yes 0 0 0 0 0 8 0 1 56.165 56.165 3 0.0011346 16059 TMT1-7 96.331 57.929 139.05 118.94 152.88 84.005 104.95 151.58 131 123 152 87 109 145 1 1 1 1 1 1 11193 17503 141 17299 26773 34584 34584 1 TELGLDLGLEPK Unmodified 1283.6973 0.69728262 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 5 0 1 68.399 68.399 3 3.7037E-08 21197 TMT1-4 127.17 87.465 68.874 79.151 79.276 49.112 101.37 58.935 65 80 80 51 101 58 1 1 1 1 1 1 7660.9 17504 2107 17300 26774 34585 34585 1 TELISVSEVHPSR Unmodified 1452.7573 0.75725712 1091 P42224 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes yes 0 0 0 0 0 5 0 1 45.074 45.074 3 1.0902E-13 12058 TMT1-4 124.48 94.941 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17505 1091 17301 26775 34586 34586 1 TELPQFVSYFQQR Unmodified 1641.8151 0.81510635 1760 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 0 8 0 2 70.965 70.965 2;3 9.0943E-05 21863 TMT1-7 93.348 61.87 69.791 94.833 92.157 103.06 97.823 89.951 66 95 95 101 101 87 2 2 2 2 2 2 12769 17506 1760 17302 26776;26777 34587;34588 34587 2 TELQSALLLR Acetyl (Protein N-term) 1184.6765 0.6764876 1420 P62253 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes yes 0 1 0 0 0 4 0 1 73.86 73.86 2 0.00072871 23622 TMT1-3 71.692 34.671 23.501 14.282 5.5595 23.326 20.643 37.787 22 15 7 22 22 36 1 1 1 1 1 1 3930.5 17507 1420 17303 26778 34589 34589 1 TELTPAYF Unmodified 940.4542 0.45419881 587 P09417-2;P09417 QDPR Dihydropteridine reductase yes no 0 0 0 0 0 4 0 1 68.558 68.558 2 0.0054201 21596 TMT1-3 118.06 99.325 30.736 44.3 26.529 45.709 42.611 38.226 29 44 29 44 44 37 1 1 1 1 1 1 19230 17508 587 17304 26779 34590 34590 1 TELTQIK Unmodified 831.47018 0.47018322 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 6 0 1 45.499 45.499 2 0.015228 12334 TMT1-5 101.33 24.045 241.8 276.48 243.42 232.39 180.75 334.9 228 279 251 229 194 319 1 1 1 1 1 1 32714 17509 2896 17305 26780 34591 34591 1 TEMDWVLK Unmodified 1020.495 0.49501776 1271 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 0 6 0 1 64.712 64.712 2 0.0015331 19923 TMT1-5 141.47 55.455 130.31 183.84 124.53 124.13 153.67 263.18 123 183 131 123 161 251 1 1 1 1 1 1 27686 17510 1271 17306 26781 34592 34592 1 TEMEDLMSSK Oxidation (M) 1185.4893 0.48934004 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 0 4 0 1 44.872 44.872 3 0.037908 12290 TMT1-3 60.518 37.985 108.25 121.93 98.281 94.777 112.04 143.91 102 123 102 94 116 138 1 1 1 1 1 1 5817.2 17511 1019 17307 26782 34593 34593 197 1 TEMEDLMSSK Unmodified 1169.4944 0.49442542 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.5 0.5 1 1 56.097 56.097 2 1.4242E-06 16697 TMT1-3 162.34 125.23 380.66 467.18 369.08 369.45 340.34 621.36 359 469 384 364 362 592 2 2 2 2 2 2 122810 17512 1019 17307 26783;26784 34594;34595 34594 2 TEMEDLMSSKDDVGK Unmodified 1683.7332 0.73315214 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 4.5 0.5 1 1 56.024 56.024 3 7.3335E-19 16717 TMT1-3 159.34 146.31 683.56 1414.6 774.47 645.93 569.45 1621.1 648 1385 824 643 626 1536 3 3 3 3 3 3 84552 17513 1019 17308 26785;26786 34596;34597;34598 34596 3 TEMTSLSFLAFLEK Unmodified 1615.8167 0.81674583 2322 Q92851-6;Q92851-2;Q92851-4;Q92851-7;Q92851-3;Q92851-5;Q92851 CASP10 Caspase-10;Caspase-10 subunit p23/17;Caspase-10 subunit p12 yes no 0 0 0 0 0 8 0 1 89.307 89.307 3 0.0077412 28873 TMT1-7 39.629 19.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17514 2322 17309 26787 34599 34599 1 TENDHINLK Unmodified 1082.5356 0.53563702 1327 P55854;P55854-2 SUMO3 Small ubiquitin-related modifier 3 yes no 0 0 0 0 0 4 0 1 36.278 36.278 3 0.00039925 8829 TMT1-3 107.21 91.818 177.1 236.63 151.18 153.67 183.9 196.23 167 236 160 152 189 189 1 1 1 1 1 1 18344 17515 1327 17310 26788 34600 34600 1 TENLLGSYFPK Unmodified 1267.6449 0.64485312 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 7.5 0.5 1 1 66.076 66.076 3 0.00028161 19829 TMT1-6 98.105 64.144 402.74 530.23 390.67 428.9 481.91 561.89 380 530 410 422 498 540 3 3 3 3 3 3 157350 17516 1603 17311 26789;26790 34601;34602;34603 34601 3 TENLNDDEK Unmodified 1076.4622 0.46219731 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 2 0 2 36.095 36.095 2 0.00034802 9486 TMT1-1 103.88 56.987 92.337 123.55 65.736 120.59 121.11 58.372 87 123 73 116 123 58 1 1 1 1 1 1 21077 17517 690 17312 26791;26792 34604;34605 34605 2 TENLNDDEKLNNAK Unmodified 1616.7642 0.76419299 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 1 3.33 0.943 1 2 41.414 41.414 3;4 4.2103E-22 10858 TMT1-3 167.73 157.97 1839.8 3129.5 1918.9 1782.9 1692.5 3339.5 1740 3088 2029 1765 1806 3178 4 4 4 4 4 4 341290 17518 690 17313 26793;26794;26795 34606;34607;34608;34609 34609 4 TENNDHINLK Unmodified 1196.5786 0.57856447 1404 P61956-2;P61956 SUMO2 Small ubiquitin-related modifier 2 yes no 0 0 0 0 0 4 0 1 35.281 35.281 3 0.00015526 8499 TMT1-3 106.4 84.527 486.03 896.11 508.68 653.74 822 835.74 460 881 549 640 842 806 2 2 2 2 2 2 52915 17519 1404 17314 26796 34610;34611 34611 2 TENPLILIDEVDK Unmodified 1497.7926 0.79263957 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 4 0 1 74.789 74.789 3 8.7388E-05 23992 TMT1-3 93.823 58.164 30.762 28.183 35.818 28.923 33.981 68.32 29 29 36 29 36 65 1 1 1 1 1 1 5113.1 17520 1042 17315 26797 34612 34612 1 TEPAALSSQEAEEVEEEGAPDYENLQELN Unmodified 3190.395 0.39497177 178 O43561-4;O43561-2;O43561-5;O43561;O43561-3 LAT Linker for activation of T-cells family member 1 yes no 0 0 0 0 0 2 0 1 72.695 72.695 3 0.00061286 23544 TMT1-1 41.562 31.955 0 15.96 0 0 0 15.99 0 15 0 0 0 15 0 1 0 0 0 1 5244.2 17521 178 17316 26798 34613 34613 1 TEPSIAEYTVR Unmodified 1264.6299 0.62993134 1685 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 yes yes 0 0 0 0 0 3 0 1 48.065 48.065 2 0.00026474 14472 TMT1-2 105.17 32.506 131.52 174.43 109.81 102.56 126.58 166.95 124 174 116 102 131 160 2 2 2 2 2 2 14280 17522 1685 17317 26799 34614;34615 34614 2 TEQAISFAK Acetyl (N-term) 1035.5237 0.52367535 665 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 1 0 0 0 0 4 0 1 59.057 59.057 2 8.6346E-08 17852 TMT1-3 103.56 73.144 431.35 673.12 511.1 444.5 432.99 716.79 408 668 530 442 457 684 1 1 1 1 1 1 119970 17523 665 17318 26800 34616 34616 1 TEQDLALGTDAEGQK Unmodified 1574.7424 0.74239491 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 3 0 1 48.925 48.925 3 2.0153E-05 14854 TMT1-2 90.754 68.599 30.586 66.549 32.797 45.064 57.043 45.276 29 65 36 44 58 44 1 1 1 1 1 1 7009.1 17524 48 17319 26801 34617 34617 1 TEQTEDLKR Unmodified 1118.5568 0.5567664 2514 Q9BRF8 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes yes 0 0 0 0 1 2.5 0.5 1 1 31.426 31.426 3 0.011732 7866 TMT1-2 71.03 47.426 215.17 306.92 185.15 166.65 257.62 225.04 203 305 196 167 261 218 2 2 2 2 2 2 17477 17525 2514 17320 26802;26803 34618;34619 34619 2 TESTPITAVK Unmodified 1045.5655 0.56554017 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 5 0 1 44.078 44.078 3 0.016308 11665 TMT1-4 58.37 34.027 130.67 167.56 78.758 104.69 111.84 136.45 123 167 87 102 116 131 1 1 1 1 1 1 6367.4 17526 3047 17321 26804 34620 34620 1 TETDLSFK Unmodified 939.45493 0.45492709 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 5 0 1 49.957 49.957 2 2.5498E-05 13962 TMT1-4 163.9 33.625 355.08 446.94 537.43 385.26 477.54 534.3 336 451 539 390 491 514 2 2 2 2 2 2 50011 17527 673 17322 26805 34621;34622 34622 2 TETGQELECLQDHLDDLVVECR Unmodified 2658.1901 0.19014491 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 0 3 0 1 72.369 72.369 3 0.00388 24023 TMT1-2 34.72 26.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17528 2327 17323 26806 34623 34623 1 TETQEKNPLPSK Unmodified 1370.7042 0.70415892 1435 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 0 0 0 0 1 6 0 2 38.883 38.883 3;4 9.8815E-08 9712 TMT1-5 125.61 97.066 940.07 1844 1482.7 1263.3 1296.7 2644 893 1816 1529 1259 1382 2515 4 4 4 4 4 4 88417 17529 1435 17324 26807;26808 34624;34625;34626;34627 34624 4 TETYPDRGQCHLQFQLIHK Unmodified 2370.1539 0.15389824 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 1 7 0 1 46.609 46.609 5 0.0004734 12190 TMT1-6 58.577 42.985 146.19 189.68 156.67 121.64 183.79 242.07 138 190 161 123 189 232 1 1 1 1 1 1 6329.4 17530 2066 17325 26809 34628 34628 1 TEVHIRPK Unmodified 978.56106 0.56106391 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 1 6.5 0.5 1 1 29.886 29.886 4 0.0070671 6147 TMT1-5 81.296 54.912 145.81 233.98 181.5 184.68 182.21 203.74 138 232 189 182 189 196 2 2 2 2 2 2 10123 17531 932 17326 26810;26811 34629;34630 34629 2 TEVHVEPHKK Unmodified 1202.6408 0.6407708 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 1 5.5 0.5 1 1 28.567 28.567 5 0.00070758 5589 TMT1-4 90.108 58.1 197.95 322.17 360.44 245.11 295.97 282.57 188 321 362 249 303 273 2 2 2 2 2 2 13590 17532 2263 17327 26812;26813 34631;34632 34631 2 TEVLSEDLLQIER Unmodified 1543.8094 0.80935227 2006 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 0 3 0 1 68.72 68.72 3 8.0556E-11 22573 TMT1-2 130.1 87.543 23.448 14.135 14.584 15.264 13.941 30.516 22 15 15 15 15 29 1 1 1 1 1 1 5319.2 17533 2006 17328 26814 34633 34633 1 TEVNSGFFYK Unmodified 1190.5608 0.56078914 1068 P40227;P40227-2;Q92526-2;Q92526 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 0 7 0 1 56.269 56.269 2 2.5873E-09 16027 TMT1-6 170.72 100.76 231.49 257.87 189.18 213.33 261.85 191.87 218 260 199 210 266 187 1 1 1 1 1 1 29086 17534 1068 17329 26815 34634 34634 1 TEVNYTQLVDLHAR Unmodified 1657.8424 0.84238373 1048 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 0 0 5 0 1 53.459 53.459 3 9.6058E-15 15413 TMT1-4 134.88 99.207 139.57 129 58.229 82.107 99.027 113.37 131 131 65 80 102 109 1 1 1 1 1 1 29731 17535 1048 17330 26816 34635 34635 1 TEWETAAPAVAETPDIK Acetyl (N-term) 1869.8996 0.89962384 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 1 0 0 0 0 2.33 0.471 2 1 71.484 71.484 2;3 8.2826E-17 23110 TMT1-1 72.496 51.656 123.43 260.76 133.68 180.12 169.6 150.8 117 255 146 175 175 146 3 3 3 3 3 3 94044 17536 1136 17331 26817;26818;26819 34636;34637;34638 34636 3 TEWLDGK Unmodified 847.40758 0.40758296 1461 P62937;P62937-2;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 0 0 0 0 0 4.25 1.92 1 2 1 52.599 52.599 2 7.286E-05 15100 TMT1-4 157.52 64.254 9193.3 13278 10236 8546.6 11419 14454 8687 13223 10591 8574 11767 13865 6 6 6 6 6 6 1676800 17537 1461 17332 26820;26821;26822;26823 34639;34640;34641;34642;34643;34644 34641 6 TEWLDGKHVVFGK Unmodified 1514.7882 0.78816332 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 1 8 0 1 56.598 56.598 4 0.0021672 16167 TMT1-7 70.963 50.01 130.13 184.42 154.14 162.93 146.82 197.28 123 184 160 160 154 189 1 1 1 1 1 1 13256 17538 1461 17333 26824 34645 34645 1 TEYAIPWLNEPSFVFADVIR Unmodified 2366.1947 0.19468365 2323 Q92854;Q92854-2 SEMA4D Semaphorin-4D yes no 0 0 0 0 0 7 0 1 94.26 94.26 3 2.5716E-05 30680 TMT1-6 70.793 53.862 10.636 6.5609 10.165 4.6711 9.999 7.1767 10 7 10 5 10 7 1 1 1 1 1 1 3447.9 17539 2323 17334 26825 34646 34646 1 TFAADHNYLQQLPPEIGSWK Unmodified 2314.1382 0.1382314 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 7 0 1 68.349 68.349 4 0.0068285 20670 TMT1-6 41.912 26.32 77.683 71.634 47.842 59.502 55.316 76.24 73 73 51 58 58 73 1 1 1 1 1 1 6080.2 17540 2448 17335 26826 34647 34647 1 TFAPEEISAMVLTK Oxidation (M) 1551.7854 0.7854457 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 0 0 7 0 1 67.521 67.521 3 0.0014754 20434 TMT1-6 75.911 53.032 37.684 104.82 69.909 58.324 48.041 76.447 36 102 73 58 51 73 1 1 1 1 1 1 11078 17541 640 17336 26827 34648 34648 120 1 TFAPEEISAMVLTK Unmodified 1535.7905 0.79053108 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7 0 1 76.068 76.068 3 1.6317E-14 23840 TMT1-6 129.77 104.3 332 592.49 325.12 440.06 386.49 614.71 314 583 353 427 409 587 2 2 2 2 2 2 114070 17542 640 17336 26828 34649;34650 34650 2 TFAYTNHTVLPEALER Unmodified 1860.937 0.9370124 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 6 0 1 54.011 54.011 3 8.0758E-05 15708 TMT1-5 78.441 56.21 108.26 130.59 89.125 94.323 165.2 149.86 102 131 94 94 167 145 1 1 1 1 1 1 12341 17543 515 17337 26829 34651 34651 1 TFCGTPDYIAPEIIAYQPYGK Unmodified 2403.1457 0.14568454 501;757 P05771-2;P05771;P05129;P05129-2;P17252 PRKCB;PRKCG;PRKCA Protein kinase C beta type;Protein kinase C gamma type;Protein kinase C alpha type no no 0 0 0 0 0 7 0 1 75.428 75.428 4 0.0037735 23557 TMT1-6 44.587 28.822 46.539 57.497 64.393 50.556 71.726 67.243 44 58 65 51 73 65 1 1 1 1 1 1 7682.4 17544 501;757 17338 26830 34652 34652 1 TFCQLILDPIFK Unmodified 1493.7952 0.79522253 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 9 0 2 83.868 83.868 2;3 4.1364E-09 25032 TMT1-8 144.1 106.38 138.43 203.56 185.21 143.25 222.87 171.66 131 203 189 145 225 167 2 2 2 2 2 2 56583 17545 685 17339 26831;26832 34653;34654 34653 2 TFDAQIVIIEHK Unmodified 1412.7664 0.76636524 718 P15170;P15170-2;P15170-3 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 0 6 0 1 58.647 58.647 3 0.00058113 17578 TMT1-5 83.087 69.659 266.44 429.21 300.56 320.07 335.66 366.72 252 425 316 315 347 353 1 1 1 1 1 1 42790 17546 718 17340 26833 34655 34655 1 TFDQLTPEESK Unmodified 1293.6089 0.60886155 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-6;O43852-13;O43852-14;O43852-11;O43852-8;O43852-10;O43852-12;O43852-7 CALU Calumenin yes no 0 0 0 0 0 4 0 1 51.484 51.484 3 0.0047552 14835 TMT1-3 69.03 38.158 130.13 173.62 164.23 120.98 195.12 187.38 123 174 167 123 198 181 1 1 1 1 1 1 24062 17547 209 17341 26834 34656 34656 1 TFDQLTPEESKER Unmodified 1578.7526 0.75256567 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-6;O43852-13;O43852-14;O43852-11;O43852-8;O43852-10;O43852-12;O43852-7 CALU Calumenin yes no 0 0 0 0 1 4 0 1 44.234 44.234 3 5.5041E-11 11985 TMT1-3 139.77 106.46 389.78 572.95 369.66 285.78 312.47 509.16 368 569 387 287 328 486 1 1 1 1 1 1 53302 17548 209 17342 26835 34657 34657 1 TFDSIVMDPK Unmodified 1151.5533 0.55326092 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 6 0 1 60.962 60.962 3 0.015976 18428 TMT1-5 58.676 25.452 99.853 91.748 91.791 87.738 100.09 74.962 94 94 94 87 102 73 1 1 1 1 1 1 11810 17549 686 17343 26836 34658 34658 1 TFDSSCHFFATK Unmodified 1446.6238 0.6238001 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 8 0.816 1 1 1 51.421 51.421 3 2.0735E-07 12310 TMT1-8 113.77 85.024 537.52 752.21 634.4 569.87 757.07 858.91 508 751 654 569 777 826 4 4 4 4 4 4 78105 17550 590 17344 26837;26838;26839 34659;34660;34661;34662 34662 4 TFDTNGDGTIDFR Unmodified 1457.6423 0.64228694 1051 P37235 HPCAL1 Hippocalcin-like protein 1 yes yes 0 0 0 0 0 4 0 1 56.349 56.349 3 0.0052503 16785 TMT1-3 62.68 50.104 53.798 111.33 61.105 51.058 55.448 83.698 51 109 65 51 58 80 1 1 1 1 1 1 8399.3 17551 1051 17345 26840 34663 34663 1 TFEDITR Unmodified 880.42905 0.42904669 642 P11169;Q8TDB8-4;Q8TDB8-2;Q8TDB8;Q8TDB8-5;Q8TDB8-3 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 0 0 0 0 0 4.5 0.5 1 1 44.195 44.195 2 3.3635E-18 12002 TMT1-3 192.56 102.85 4138.8 5459.1 4709.9 2746.2 3813.2 5386.4 3909 5467 4788 2835 3943 5155 2 2 2 2 2 2 509520 17552 642 17346 26841;26842 34664;34665 34664 2 TFEGIDPK Unmodified 905.44945 0.44944778 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 5 0 1 50.236 50.236 3 0.0043627 14050 TMT1-4 87.181 50.161 153.72 188.17 153.46 170.4 158.77 235.32 145 189 160 167 167 225 1 1 1 1 1 1 30246 17553 1217 17347 26843 34666 34666 1 TFEGVDPQTTSMR Unmodified 1467.6664 0.6663932 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 4 0 1 47.734 47.734 3 5.1744E-06 13353 TMT1-3 109.16 79.385 61.471 95.075 47.614 34.877 86.812 75.341 58 94 51 36 87 73 1 1 1 1 1 1 14111 17554 972 17348 26844 34667 34667 1 TFEINPR Unmodified 875.45012 0.45011648 708 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 0 5.5 0.5 1 1 43.694 43.694 2 0.0080399 11644 TMT1-5 120.62 54.818 749.08 1032.2 727.87 596.66 780 977.65 707 1029 758 599 804 938 2 2 2 2 2 2 126720 17555 708 17349 26845;26846 34668;34669 34669 2 TFESLVDFSK Unmodified 1171.5761 0.57610486 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 69.605 69.605 2;3 0.00075547 21832 TMT1-5 94.692 63.82 138.55 187.7 178.53 120.19 192 218.38 131 188 181 123 196 210 2 2 2 2 2 2 47192 17556 1909 17350 26847;26848 34670;34671 34670 2 TFEVCDLPVR Unmodified 1234.6016 0.6016081 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 5 0 1 57.603 57.603 2 0.00020467 16973 TMT1-4 92.051 59.301 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17557 1021 17351 26849 34672 34672 1 TFEVNVLAHFWTTK Unmodified 1691.8671 0.86714192 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 9 0 1 74.54 74.54 3 6.6388E-05 21478 TMT1-8 79.771 51.802 68.958 71.829 71.394 65.887 47.987 67.921 65 73 73 65 51 65 1 1 1 1 1 1 7589.8 17558 2204 17352 26850 34673 34673 1 TFFLEALR Unmodified 995.54402 0.54401687 2614 Q9H0R4;Q9H0R4-2 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 0 0 0 0 0 9 0 1 68.712 68.712 2 0.0069064 19196 TMT1-8 122.18 70.746 130.05 212.25 144.9 138.57 192.73 172.52 123 210 152 138 196 167 1 1 1 1 1 1 44899 17559 2614 17353 26851 34674 34674 1 TFFSFPAVVAPFK Unmodified 1456.7755 0.77547336 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 9 0 1 84.842 84.842 3 6.345E-05 25482 TMT1-8 93.614 49.623 177.47 154.58 157.55 97.047 210.34 172.02 167 159 159 101 211 167 2 2 2 2 2 2 34822 17560 1084 17354 26852 34675;34676 34676 2 TFGENYVQELLEK Unmodified 1568.7722 0.77223848 329 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 0 5.67 0.471 1 2 76.935 76.935 2;3 4.5488E-13 24715 TMT1-5 125.54 101.25 84.214 153.66 143.11 92.788 133.83 151.82 80 152 145 95 137 146 3 3 3 3 3 3 14368 17561 329 17355 26853;26854;26855 34677;34678;34679;34680 34680 4 TFGETHPFTK Unmodified 1163.5611 0.56112349 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 7 0 1 43.431 43.431 3 0.00066753 10898 TMT1-6 96.143 73.226 317.25 471.23 382.59 408 340.31 601.11 300 469 398 400 363 573 1 1 1 1 1 1 55406 17562 608 17356 26856 34681 34681 1 TFHFNTVEEVHSR Unmodified 1601.7587 0.7586541 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 6 1.22 2 1 1 39.432 39.432 3;4 1.5305E-13 9951 TMT1-5 161.21 149.29 406.41 587.57 446.49 409.84 504.85 559.1 384 585 464 408 519 538 4 4 4 4 4 4 153930 17563 967 17357 26857;26858;26859;26860 34682;34683;34684;34685 34684 4 TFHIFYYLLSGAGEHLK Unmodified 1995.0254 0.025433475 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 9 0 2 74.56 74.56 4;5 8.0673E-15 21520 TMT1-8 120.29 85.085 1114.4 1285.8 1329.6 962.72 1027.8 1342.6 1052 1300 1345 971 1069 1287 5 5 5 5 5 5 234750 17564 1019 17358 26861;26862 34686;34687;34688;34689;34690 34687 5 TFIAIKPDGVQR Unmodified 1343.7561 0.75613491 846;724 P22392-2;P22392;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 1 9 0 1 50.208 50.208 2 9.5278E-06 11871 TMT1-8 100.72 58.613 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17565 846;724 17359 26863 34691 34691 1 TFITIGDR Unmodified 921.49198 0.4919813 1130 P46734-2;P46734;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 0 0 0 7 0 1 52.294 52.294 2 0.0017186 14427 TMT1-6 85.212 72.684 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17566 1130 17360 26864 34692 34692 1 TFITQQGIK Unmodified 1034.576 0.57604528 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 0 8.5 0.5 1 1 50.828 50.828 2 9.3324E-06 13949 TMT1-7 158.76 93.504 160.98 179.4 202.81 117.98 232.43 140.48 152 182 203 123 232 138 2 2 2 2 2 2 20767 17567 2387 17361 26865;26866 34693;34694 34693 2 TFLLEYHNR Unmodified 1191.6037 0.60365701 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 7 0 1 46.938 46.938 3 0.00038079 12288 TMT1-6 109.29 86.55 68.945 86.903 60.789 89.326 113.9 96.954 65 87 65 87 116 94 1 1 1 1 1 1 21945 17568 2928 17362 26867 34695 34695 1 TFLRPSPEDEAIYGPNTK Unmodified 2034.0058 0.0058202445 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 1 6 0 2 53.116 53.116 3;4 1.8357E-10 15431 TMT1-5 114.03 85.402 200.26 221.91 238.66 126.08 152.98 219.49 189 225 239 131 159 210 2 2 2 2 2 2 29375 17569 2852 17363 26868;26869 34696;34697 34696 2 TFLVIPELAQELHVWTDK Unmodified 2138.1412 0.14119151 1207 P49902-2;P49902 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 0 0 0 0 8 0 1 90.051 90.051 3 7.7254E-06 29089 TMT1-7 80.603 62.686 49.743 69.109 57.001 54.779 44.969 48.819 47 69 59 54 47 47 2 2 2 2 2 2 9066.8 17570 1207 17364 26870 34698;34699 34698 2 TFNTSTGGLLLPSDTK Unmodified 1650.8465 0.84646606 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 7 0 1 63.055 63.055 2 2.8273E-19 18680 TMT1-6 120.21 82.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17571 675 17365 26871 34700 34700 1 TFNTSTGGLLLPSDTKR Unmodified 1806.9476 0.94757708 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 8.33 0.471 2 1 54.63 54.63 3;4 1.143E-09 15508 TMT1-7 108.97 83.254 277.25 448.11 271.98 327.74 250.91 418.17 262 443 291 319 268 399 4 4 4 4 4 4 46530 17572 675 17366 26872;26873;26874 34701;34702;34703;34704 34702 4 TFNVDMYEEIHR Unmodified 1552.698 0.69802768 1670 Q13098-5;Q13098;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 0 4 0 1 54.263 54.263 3 8.1804E-05 15955 TMT1-3 77.078 56.697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17573 1670 17367 26875 34705 34705 1 TFPACDGSHNK Unmodified 1232.5244 0.52442041 2183 Q8N5K1 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 0 0 0 0 0 6 0 1 33.515 33.515 3 0.0038439 7655 TMT1-5 72.089 48.853 68.684 71.065 118.16 61.536 131.14 89 65 73 116 65 131 87 1 1 1 1 1 1 7024.8 17574 2183 17368 26876 34706 34706 1 TFPAHDYFK Unmodified 1124.5291 0.52909508 3004;1966 Q9Y3P9;Q9Y3P9-2;Q5R372-4;Q5R372;Q5R372-3 RABGAP1;RABGAP1L Rab GTPase-activating protein 1;Rab GTPase-activating protein 1-like no no 0 0 0 0 0 7 0 1 48.054 48.054 3 0.0073167 12704 TMT1-6 70.908 45.691 92.091 122.86 107.64 55.25 91.886 113.57 87 123 109 58 94 109 1 1 1 1 1 1 8944.1 17575 3004;1966 17369 26877 34707 34707 1 TFPEVMIPVFDILLGR Unmodified 1846.0063 0.0062779369 1751 Q14139;Q14139-2 UBE4A Ubiquitin conjugation factor E4 A yes no 0 0 0 0 0 9 0 1 105.82 105.82 3 0.0064108 33078 TMT1-8 46.926 34.429 4.2344 11.418 0 0 7.1826 4.059 4 11 0 0 7 4 1 1 0 0 1 1 727.52 17576 1751 17370 26878 34708 34708 1 TFPGFFSPMLGEFVSETESR Oxidation (M) 2280.0409 0.040885122 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 1 0 0 7.67 0.471 1 2 82.905 82.905 3 1.6687E-09 26498 TMT1-7 96.204 76.949 123.82 158.23 155.38 171.2 168.17 204.14 117 159 160 168 175 196 4 4 4 4 4 4 27909 17577 437 17371 26879;26880;26881 34709;34710;34711;34712;34713 34711 51 5 TFPGFFSPMLGEFVSETESR Unmodified 2264.046 0.0459705 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 7.75 0.829 2 1 1 91.044 91.044 2;3 4.2837E-45 29454 TMT1-7 184.2 160.97 223.94 315.47 147.09 213.8 211.91 365.99 211 313 160 205 224 349 7 7 6 5 7 7 157560 17578 437 17371 26882;26883;26884;26885 34714;34715;34716;34717;34718;34719;34720 34718 7 TFQLQLLSPSSSIVPAFNTGTITQVIK Unmodified 2889.5852 0.58515998 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 9 0 1 89.513 89.513 4 8.0636E-10 27227 TMT1-8 71.524 56.754 46.404 64.678 80.943 33.731 42.136 68.088 44 65 80 36 44 65 1 1 1 1 1 1 14302 17579 199 17372 26886 34721 34721 1 TFSHELSDFGLESTAGEIPVVAIR Unmodified 2574.2966 0.29658254 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5.5 0.5 1 1 73.869 73.869 3 1.1961E-13 23348 TMT1-4 101.89 98.704 85.904 108.89 77.311 75.519 98.78 129.37 81 109 81 73 102 124 4 4 4 3 4 4 60090 17580 955 17373 26887;26888 34722;34723;34724;34725 34722 4 TFSLDKDIVTNVSPR Unmodified 1690.889 0.88899957 1652 Q12882 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] yes yes 0 0 0 0 1 8 0 1 58.689 58.689 3 2.2516E-07 17008 TMT1-7 106.19 87.823 122.53 260.25 104.36 110.41 133.55 166.75 116 254 116 109 138 160 1 1 1 1 1 1 13908 17581 1652 17374 26889 34726 34726 1 TFSLFQQLIQSSFVVER Unmodified 2028.068 0.068026571 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 9 0 1 93.723 93.723 3 6.8826E-20 28787 TMT1-8 131.45 95.961 93.327 100.58 99.213 104.3 67.679 113.2 88 102 102 102 73 108 3 3 3 3 3 3 16909 17582 1091 17375 26890 34727;34728;34729 34728 3 TFSSISR Unmodified 796.40792 0.40791731 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 7 0 1 37.536 37.536 2 0.0088968 8599 TMT1-6 75.243 16.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17583 1229 17376 26891 34730 34730 1 TFSVWYVPEVTGTHK Unmodified 1749.8726 0.87262123 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7 3.03 1 2 2 64.897 64.897 3;4 1.3303E-16 17600 TMT1-8 130.72 97.57 2539.8 3153.1 3095.3 2274.1 2884.8 3599.6 2399 3173 3141 2299 2976 3454 10 10 10 10 10 10 1028900 17584 831 17377 26892;26893;26894;26895;26896 34731;34732;34733;34734;34735;34736;34737;34738;34739;34740 34737 10 TFSYAGFEMQPK Unmodified 1404.6384 0.63838754 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 8 0 1 62.579 62.579 3 0.0023936 18588 TMT1-7 72.152 66.429 46.209 87.88 94.022 48.942 63.681 60.011 44 87 94 51 65 58 1 1 1 1 1 1 6610.5 17585 2496 17378 26897 34741 34741 1 TFTAWCNSHLR Unmodified 1391.6405 0.64045322 672;195;1022 P12814;P12814-3;P12814-2;P12814-4;Q08043;O43707;O43707-3;P35609-2;P35609 ACTN1;ACTN3;ACTN4;ACTN2 Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4;Alpha-actinin-2 no no 0 0 0 0 0 9 0 1 44.927 44.927 3 3.2822E-30 9808 TMT1-8 202 149.76 376.65 647.78 528.94 400.1 586.93 618.59 357 641 543 405 599 596 1 1 1 1 1 1 179990 17586 672;195;1022 17379 26898 34742 34742 1 TFTDCFNCLPIAAIVDEK Unmodified 2112.986 0.98601278 1413;1044;1414 P36873;P36873-2;P62136;P62136-2;P62136-3;P62140 PPP1CC;PPP1CA;PPP1CB Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 0 0 0 0 0 6.5 0.5 1 1 84.852 84.852 3 5.2419E-06 27169 TMT1-6 67.645 51.339 46.655 74.011 30.837 77.196 40.138 68.145 44 73 36 73 44 65 1 1 1 1 1 1 18879 17587 1044;1413;1414 17380 26899;26900 34743;34744 34744 2 TFTTQETITNAETAK Unmodified 1654.805 0.80499517 516;35 P06744;P06744-2;CON__Q3ZBD7 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 0 5 0 1 50.566 50.566 3 1.1058E-10 14144 TMT1-4 121.92 72.5 115.86 99.038 100.32 78.896 136.35 127.23 109 102 102 80 138 123 1 1 1 1 1 1 65920 + 17588 516;35 17381 26901 34745 34745 1 TFTTQETITNAETAKEWFLQAAK Unmodified 2628.3071 0.30714722 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 1 8 0 1 79.413 79.413 4 5.3986E-13 25096 TMT1-7 99.603 82.387 123.29 144.72 74.725 56.8 113.79 143.86 116 145 80 58 116 138 2 2 2 2 2 2 12524 17589 516 17382 26902 34746;34747 34746 2 TFVAADGK Unmodified 807.41267 0.41266834 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 6 0 1 42.718 42.718 2 0.013083 11266 TMT1-5 95.741 40.025 160.16 296.91 242.06 171.88 206.18 314.98 152 293 248 174 215 301 1 1 1 1 1 1 18397 17590 525 17383 26903 34748 34748 1 TFVLEVMGR Unmodified 1050.5532 0.55320134 1559;765;560 P17858;P17858-2;Q01813;Q01813-2;P08237-3;P08237;P08237-2 PFKL;PFKP;PFKM ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type no no 0 0 0 0 0 8.5 0.5 1 1 64.913 64.913 2 0.001231 19472 TMT1-7 122.44 62.636 230.62 397.93 215.82 228.29 253.75 285.91 218 392 232 225 262 275 2 2 2 2 2 2 46044 17591 765;1559;560 17384 26904;26905 34749;34750 34749 2 TFVNITPAEVGVLVGK Unmodified 1642.9294 0.92940782 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 0 7.7 2.33 1 1 3 5 78.151 78.151 2;3;4 1.5476E-22 22831 TMT1-8 151.44 116.22 6090.4 8075.3 7028.7 5557 7588.5 8076.9 5753 8086 7201 5598 7764 7780 16 16 16 16 16 16 3167600 17592 540 17385 26906;26907;26908;26909;26910;26911;26912;26913;26914;26915 34751;34752;34753;34754;34755;34756;34757;34758;34759;34760;34761;34762;34763;34764;34765;34766;34767;34768 34765 18 TFVNITPAEVGVLVGKDR Unmodified 1914.0575 0.057461884 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 1 8.5 0.5 1 1 70.369 70.369 3 7.1613E-10 21663 TMT1-7 105.5 87.957 410.75 514.02 500.52 315.58 231.38 728.94 388 517 506 320 259 690 3 3 3 3 3 3 130880 17593 540 17386 26916;26917 34769;34770;34771 34769 3 TFVQEDIYDEFVER Unmodified 1788.8206 0.82064524 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 3 0 1 72.892 72.892 3 5.2925E-08 24191 TMT1-2 114.64 104.89 14.514 52.602 40.884 54.157 12.893 53.998 14 51 43 52 15 51 2 2 2 2 1 2 11730 17594 483 17387 26918 34772;34773 34772 2 TFVSGACDASIK Unmodified 1254.5914 0.59143734 1454 P62879;P62879-2 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 0 0 0 0 0 7 0 1 49.956 49.956 2 2.9293E-13 13506 TMT1-6 169.21 124.04 61.4 72.211 79.041 64.589 92.775 75.171 58 73 80 65 94 73 1 1 1 1 1 1 10447 17595 1454 17388 26919 34774 34774 1 TFVSGACDASSK Unmodified 1228.5394 0.53940177 2674 Q9HAV0 GNB4 Guanine nucleotide-binding protein subunit beta-4 yes yes 0 0 0 0 0 6 0 1 42.597 42.597 3 4.5426E-10 11185 TMT1-5 153.54 140.96 114.89 199.96 177.55 128.24 231.81 205.52 109 198 181 131 234 199 1 1 1 1 1 1 23408 17596 2674 17389 26920 34775 34775 1 TFVVQGFGNVGLHSMR Unmodified 1747.8828 0.88280876 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 58.98 58.98 3 1.8419E-11 15337 TMT1-8 110.34 88.78 46.6 65.221 47.64 76.184 40.697 53.205 44 65 51 73 44 51 1 1 1 1 1 1 16540 17597 387 17390 26921 34776 34776 1 TFYGLHQDFPSVVLVGLGK Unmodified 2076.1044 0.10441208 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 9 0 2 75.784 75.784 3;4 1.6163E-05 21916 TMT1-8 63.337 42.674 154.43 225.94 182.32 176.06 172.91 242.38 146 225 189 174 181 232 2 2 2 2 2 2 25721 17598 932 17391 26922;26923 34777;34778 34777 2 TFYSCTTEGR Unmodified 1220.5132 0.51318702 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 5 0 1 38.608 38.608 2 2.2518E-07 9494 TMT1-4 132.39 100.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17599 442 17392 26924 34779 34779 1 TGAEGAVLDEAK Unmodified 1159.5721 0.57208211 998 P33176;O60282;Q12840;O60282-2 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 2 0 1 46.894 46.894 2 5.918E-08 13692 TMT1-1 111.63 63.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17600 998 17393 26925 34780 34780 1 TGAFSIPVIQIVYETLK Unmodified 1878.0503 0.050251242 2291 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 9 0 1 99.024 99.024 3 2.3212E-07 30637 TMT1-8 78.95 35.835 23.069 67.044 33.513 29.189 27.153 53.591 22 65 36 29 29 51 1 1 1 1 1 1 8809.2 17601 2291 17394 26926 34781 34781 1 TGAFSIPVIQIVYETLKDQQEGK Unmodified 2563.3534 0.35336913 2291 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 1 9 0 1 92.086 92.086 4 0.00049015 28194 TMT1-8 52.483 37.869 23.167 36.017 43.338 44.721 41.887 60.633 22 36 44 44 44 58 1 1 1 1 1 1 4391.6 17602 2291 17395 26927 34782 34782 1 TGAICAIDYTWNLLK Unmodified 1737.876 0.87599205 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 8 0 1 83.619 83.619 3 1.1924E-05 26754 TMT1-7 92.063 76.518 38.009 74.424 40.952 44.874 41.331 76.639 36 73 44 44 44 73 1 1 1 1 1 1 6864.1 17603 1592 17396 26928 34783 34783 1 TGAIVDVPVGEELLGR Unmodified 1623.8832 0.88318591 888 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 4.33 0.471 2 1 69.589 69.589 2;3 1.4434E-17 21632 TMT1-4 146.79 103.02 415.23 569.3 422.18 347.73 455.25 472.04 392 568 438 349 466 455 4 4 4 4 4 4 385280 17604 888 17397 26929;26930;26931 34784;34785;34786;34787 34786 4 TGALLLQGFIQDR Unmodified 1430.7882 0.78816332 1611 Q07812-5;Q07812-8;Q07812;Q07812-2;Q07812-7 BAX Apoptosis regulator BAX yes no 0 0 0 0 0 8.5 0.5 1 1 72.155 72.155 3 0.0022736 22275 TMT1-7 68.277 36.856 61.628 80.402 33.634 60.058 70.776 82.194 58 80 36 58 73 79 2 2 1 2 2 2 22582 17605 1611 17398 26932;26933 34788;34789 34788 2 TGAQELLR Unmodified 886.48723 0.48723027 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 4.5 0.5 1 1 39.749 39.749 2 0.0051664 10289 TMT1-3 119.86 14.615 4753.8 5580.4 5663.8 4271.8 5804 7177 4488 5635 5742 4317 5972 6888 2 2 2 2 2 2 1401800 + 17606 506 17399 26934;26935 34790;34791 34790 2 TGASFQQAQEEFSQGIFSSR Unmodified 2204.0134 0.013424818 127 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 0 0 0 0 0 7 0 1 68.043 68.043 3 0.00029622 20646 TMT1-6 50.873 40.914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17607 127 17400 26936 34792 34792 1 TGCIPSNYVAPVDSIQAEEWYFGK Unmodified 2730.2636 0.26356785 605 P09769 FGR Tyrosine-protein kinase Fgr yes yes 0 0 0 0 0 6 0 1 77.495 77.495 3 3.5173E-07 24975 TMT1-5 66.383 46.834 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17608 605 17401 26937 34793 34793 1 TGCNVLLIQK Unmodified 1144.6274 0.62742892 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 8 0 1 54.618 54.618 3 0.0047772 15385 TMT1-7 73.499 33.79 68.59 102.1 107.61 86.671 106.7 97.159 65 102 109 87 109 94 1 1 1 1 1 1 13411 17609 1233 17402 26938 34794 34794 1 TGDAISVMSEVAQTLLTQDVR Unmodified 2233.126 0.12601173 2499 Q99943 AGPAT1 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha yes yes 0 0 0 0 0 7.5 0.5 1 1 97.275 97.275 3 6.577E-14 31636 TMT1-6 89.659 71.364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17610 2499 17403 26939;26940 34795;34796 34795 2 TGDFQLHTNVNDGTEFGGSIYQK Unmodified 2527.1615 0.16154562 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 5 0 2 58.482 58.482 3;4 2.9876E-10 17343 TMT1-4 77.576 57.854 61.175 110.44 84.343 64.125 100.66 89.87 58 109 87 65 102 87 1 1 1 1 1 1 21458 17611 1119 17404 26941;26942 34797;34798 34798 2 TGDLGDINAEQLPGR Unmodified 1554.7638 0.76379906 2954 Q9Y263 PLAA Phospholipase A-2-activating protein yes yes 0 0 0 0 0 3 0 1 53.407 53.407 3 6.8172E-05 16589 TMT1-2 84.508 82.383 46.392 88.389 62.852 43.562 41.684 68.101 44 87 65 44 44 65 1 1 1 1 1 1 9883.4 17612 2954 17405 26943 34799 34799 1 TGDTGMLPANYVEAI Unmodified 1550.7287 0.72865911 1801 Q14847;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 3.67 0.471 1 2 76.039 76.039 2;3 1.781E-05 24514 TMT1-3 100.92 83.334 77.362 165.78 82.32 112.8 76.067 115.09 73 162 88 109 80 110 2 4 3 4 3 4 130010 17613 1801 17406 26944;26945;26946 34800;34801;34802;34803 34803 4 TGEAIVDAALSALR Unmodified 1385.7514 0.75144346 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 7 0.816 1 1 1 80.195 80.195 2;3 1.8119E-21 25435 TMT1-6 167.83 101.24 468.07 771.12 611.05 590.69 595.52 722.81 443 764 634 584 619 694 5 6 6 6 6 6 152330 17614 1827 17407 26947;26948;26949 34804;34805;34806;34807;34808;34809 34808 6 TGEGFLCVFAINNSK Unmodified 1655.7977 0.79774172 412 P01111 NRAS GTPase NRas yes yes 0 0 0 0 0 8 0 1 72.822 72.822 3 8.8622E-06 22595 TMT1-7 75.316 60.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17615 412 17408 26950 34810 34810 1 TGENVEDAFLEAAK Unmodified 1492.7046 0.70455285 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 0 3 0.816 1 1 1 65.278 65.278 3 3.2302E-10 21012 TMT1-1 118.13 84.442 446.25 618.49 473.01 424.13 474.68 504.53 421 617 491 422 489 486 5 6 6 6 6 6 154300 17616 1378 17409 26951;26952;26953 34811;34812;34813;34814;34815;34816 34812 6 TGENVEDAFLEAAKK Unmodified 1620.7995 0.79951586 1378 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 1 5 0 2 61.275 61.275 3;4 0.00028554 18385 TMT1-4 76.574 60.939 315.15 351.54 294.95 277.81 275.69 433.46 297 355 305 275 290 414 3 3 3 3 3 3 43847 17617 1378 17410 26954;26955 34817;34818;34819 34819 3 TGETGIEETILEGHLGVTK Unmodified 1983.0161 0.01605058 2338 Q93008-1;Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 0 4 0 1 62.891 62.891 3 4.9803E-05 19454 TMT1-3 68.567 52.975 54 56.844 73.384 43.082 33.843 53.4 51 58 73 44 36 51 1 1 1 1 1 1 19265 17618 2338 17411 26956 34820 34820 1 TGFLEIDEHMR Unmodified 1346.6289 0.62888548 1031 P35813-3;P35813;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 4.5 0.5 1 1 52.525 52.525 3 4.401E-05 14961 TMT1-4 107.03 97.593 93.063 138.7 111.12 125.74 110.62 143.95 88 138 116 123 116 138 2 2 2 2 2 2 21556 17619 1031 17412 26957;26958 34821;34822 34822 2 TGFQAVTGK Unmodified 907.47633 0.47633123 803 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 0 8 0 1 45.483 45.483 2 0.00065081 11816 TMT1-7 89.827 72.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17620 803 17413 26959 34823 34823 1 TGFSSDQIEQLHR Unmodified 1516.727 0.72701962 2373 Q96BS2-2;Q96BS2-3;Q96BS2 TESC Calcineurin B homologous protein 3 yes no 0 0 0 0 0 5 0 1 43.599 43.599 3 0.00016466 11460 TMT1-4 89.507 67.461 91.79 130.66 151.69 100.46 105.77 105.71 87 131 152 102 109 102 1 1 1 1 1 1 12251 17621 2373 17414 26960 34824 34824 1 TGGLEIDSDFGGFR Unmodified 1469.6787 0.67867245 373 O95831-3;O95831;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 64.589 64.589 2 6.2892E-10 19679 TMT1-4 125.24 111.58 91.979 130.11 120.28 101.83 74.279 137.53 87 130 123 101 80 131 2 2 2 2 2 2 22034 17622 373 17415 26961;26962 34825;34826 34826 2 TGGLYSCDITAR Unmodified 1312.6082 0.60815004 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 5 0 1 44.833 44.833 2 4.1757E-08 11942 TMT1-4 132.44 93.414 139.51 112.65 81.705 111.49 147.9 173.8 131 116 87 109 152 167 1 1 1 1 1 1 27613 17623 856 17416 26963 34827 34827 1 TGGTQTDLFTCGK Unmodified 1384.6293 0.62927941 854 P23193;P23193-2;Q15560-2;Q15560 TCEA1;TCEA2 Transcription elongation factor A protein 1;Transcription elongation factor A protein 2 yes no 0 0 0 0 0 6 0 1 49.808 49.808 3 0.0076187 14096 TMT1-5 59.227 40.447 77.292 116.96 75.206 88.619 105.8 120.64 73 116 80 87 109 116 1 1 1 1 1 1 8411.5 17624 854 17417 26964 34828 34828 1 TGHSGTLDPK Unmodified 1011.4985 0.49852324 241 O60832-2;O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 0 0 5 0 1 29.353 29.353 3 0.0017918 5863 TMT1-4 85.377 70.405 68.851 134.13 36.558 59.604 85.675 75.373 65 131 44 58 87 73 1 1 1 1 1 1 4140.9 17625 241 17418 26965 34829 34829 1 TGIANTLGNK Unmodified 987.53491 0.53490874 2320;143 Q92835;Q92835-2;Q92835-3;O15357;O15357-2 INPP5D;INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1;Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 no no 0 0 0 0 0 7 0 1 44.846 44.846 2 0.0005179 11483 TMT1-6 114.89 87.64 53.902 80.317 69.889 89.926 53.148 98.687 51 80 73 87 58 94 1 1 1 1 1 1 7168.7 17626 2320;143 17419 26966 34830 34830 1 TGIEEASGAFVYLR Unmodified 1511.762 0.76200815 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5.33 0.471 2 1 64.367 64.367 2;3 1.311E-13 19677 TMT1-5 119.88 93.469 69.43 171.54 87.868 96.088 75.349 114.04 66 167 95 94 80 109 2 2 2 2 2 2 49150 17627 936 17420 26967;26968;26969 34831;34832;34833 34833 3 TGIEQGSDAGYLCESQK Unmodified 1841.8102 0.8101569 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 4 0 1 48.634 48.634 3 4.859E-15 13759 TMT1-3 129.05 111.98 99.276 145.19 143.59 91.779 127.88 143.46 94 145 145 94 131 138 1 1 1 1 1 1 37327 17628 1076 17421 26970 34834 34834 1 TGIIVTTSEAVLLQLVADKDHPK Unmodified 2447.3635 0.36353989 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 1 8 0 1 81.689 81.689 4 8.6593E-24 26071 TMT1-7 128.41 120.79 137.62 165.51 173.28 97.932 171.56 173.13 130 167 174 102 174 167 2 2 2 2 2 2 23087 17629 2382 17422 26971 34835;34836 34836 2 TGISDVFAK Unmodified 936.49165 0.49164694 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 56.272 56.272 2 0.0014564 16021 TMT1-6 119.21 62.108 1244.1 2107.3 1375.6 1336.2 1599.6 2254.8 1177 2081 1449 1325 1662 2158 2 2 2 2 2 2 130290 17630 786 17423 26972 34837;34838 34838 2 TGIYEEK Unmodified 838.40725 0.40724861 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 4 0 1 39.76 39.76 2 0.010218 10193 TMT1-3 109.01 46.298 1544.3 2459.5 2202.1 1559.3 1993.4 2186 1463 2444 2243 1581 2046 2104 2 2 2 2 2 2 243110 17631 920 17424 26973 34839;34840 34839 2 TGIYSSTSCHK Unmodified 1239.5554 0.55538619 603 P09668 CTSH Pro-cathepsin H;Cathepsin H mini chain;Cathepsin H;Cathepsin H heavy chain;Cathepsin H light chain yes yes 0 0 0 0 0 9 0 1 32.5 32.5 3 0.00023356 5670 TMT1-8 89.548 65.943 15.855 21.975 21.757 14.56 28.632 30.097 15 22 22 15 29 29 1 1 1 1 1 1 1927.8 17632 603 17425 26974 34841 34841 1 TGLCYLPEELAALQK Unmodified 1704.8757 0.87565769 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6.5 0.5 1 1 76.008 76.008 3 3.1836E-06 24365 TMT1-5 101.2 77.012 178.06 271.87 139.99 187.33 172.91 227.45 168 269 153 182 181 218 3 3 3 3 3 3 26556 17633 1666 17426 26975;26976 34842;34843;34844 34842 3 TGLFTPDLAFEAIVK Unmodified 1620.8763 0.87630962 1226 P50570-5;P50570;P50570-2 DNM2 Dynamin-2 yes no 0 0 0 0 0 7.5 0.5 1 1 84.356 84.356 3 1.5921E-14 27000 TMT1-7 110.98 78.922 23.049 51.88 49.636 52.008 41.296 68.112 22 51 51 51 44 65 1 1 1 1 1 1 5185.3 17634 1226 17427 26977;26978 34845;34846 34846 2 TGLFTPDMAFETIVK Unmodified 1668.8433 0.84329493 1591 Q05193-3;Q05193 DNM1 Dynamin-1 yes no 0 0 0 0 0 7 0 1 80.997 80.997 3 0.0057224 25687 TMT1-6 55.186 29.596 61.751 56.999 32.866 52.87 48.585 67.904 58 58 36 51 51 65 1 1 1 1 1 1 4562.2 17635 1591 17428 26979 34847 34847 1 TGLIDYNQLALTAR Unmodified 1547.8308 0.83075641 1006 P34897-3;P34897 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 7 0 1 64.304 64.304 2 1.1894E-14 19172 TMT1-6 132.06 88.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17636 1006 17429 26980 34848 34848 1 TGLIIGK Unmodified 700.44833 0.44832557 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 9 0 1 51.391 51.391 2 0.040201 12384 TMT1-8 84.244 9.8284 169.54 234.85 161.12 128.27 282.46 223.26 160 234 168 131 283 217 1 1 1 1 1 1 26817 17637 2361 17430 26981 34849 34849 1 TGLIPSNYVAEQAESIDNPLHEAAK Unmodified 2666.3188 0.31877454 2324 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 0 5 0 1 66.353 66.353 3 1.4262E-19 20385 TMT1-4 113.67 99.513 54.007 64.42 65.676 35.884 34.158 84.305 51 65 66 37 37 80 2 2 2 2 2 2 21411 17638 2324 17431 26982 34850;34851 34850 2 TGLLGIFWK Unmodified 1033.5961 0.59605244 2243 Q8TBQ9 TMEM167A Protein kish-A yes yes 0 0 0 0 0 9 0 1 80.659 80.659 2 0.0014671 23812 TMT1-8 123.92 80.89 37.76 88.842 70.552 65.386 77.311 97.998 36 87 73 65 80 94 1 1 1 1 1 1 10309 17639 2243 17432 26983 34852 34852 1 TGLPSTLLAHIWSLCDTK Unmodified 2012.0401 0.040097261 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 9 0 1 77.714 77.714 3 7.0146E-10 22697 TMT1-8 86.455 66.851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17640 1098 17433 26984 34853 34853 1 TGLQEVEVK Unmodified 1001.5393 0.53932542 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 4 0 1 46.987 46.987 2 0.012601 13109 TMT1-3 85.355 38.929 183.76 281.25 255.95 169.99 262.53 290.99 174 280 260 174 268 280 1 1 1 1 1 1 15843 17641 409 17434 26985 34854 34854 1 TGLVTTTWER Unmodified 1162.5982 0.59823728 2221 Q8NEU8-3;Q8NEU8;Q8NEU8-2 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 0 6 0 1 50.011 50.011 2 0.005429 14153 TMT1-5 62.166 40.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17642 2221 17435 26986 34855 34855 1 TGMNVELAFLAIAK Unmodified 1476.801 0.80103619 2366 Q96AX2;Q96AX2-3;Q96AX2-4;Q96AX2-2 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 9 0 1 82.46 82.46 3 3.7508E-10 24543 TMT1-8 113.35 88.555 70.376 56.526 26.326 29.317 43.109 45.674 66 58 29 29 44 44 1 1 1 1 1 1 4676.8 17643 2366 17436 26987 34856 34856 1 TGPAATTLPDGAAAESLVESSEVAVIGFFK Unmodified 2934.4862 0.4862338 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 4.75 2.17 1 3 98.987 98.987 3;4;5 5.2791E-15 32899 TMT1-5 91.583 72.539 211.6 337.02 244.66 250.41 322.93 312.92 200 334 253 248 330 302 9 10 8 10 10 9 48060 17644 530 17437 26988;26989;26990;26991 34857;34858;34859;34860;34861;34862;34863;34864;34865;34866 34859 10 TGPFEDLKENLIR Unmodified 1530.8042 0.80420731 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 1 6.5 0.5 1 1 63.562 63.562 3 0.00028325 18873 TMT1-6 89.747 60.014 341.97 463.2 381.48 295.2 471.86 454.51 323 463 392 299 479 439 2 2 2 2 2 2 40104 17645 1115 17438 26992;26993 34867;34868 34868 2 TGPNLHGLFGR Unmodified 1167.6149 0.6148904 1533 P99999;CON__P62894 CYCS Cytochrome c yes no 0 0 0 0 0 8.5 0.5 1 1 47.866 47.866 3 0.01749 12705 TMT1-7 54.27 18.637 494.42 706.1 702.76 535.3 692.91 641.15 468 706 713 540 707 620 2 2 2 2 2 2 81449 17646 1533 17439 26994;26995 34869;34870 34869 2 TGQAAELGGLLK Unmodified 1156.6452 0.64518747 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 6 0 1 58.033 58.033 3 0.00010985 17283 TMT1-5 97.957 54.329 124.54 97.637 85.477 48.737 101.62 82.38 117 101 87 51 102 80 1 1 1 1 1 1 10700 17647 54 17440 26996 34871 34871 1 TGQAPGYSYTAANK Unmodified 1427.6681 0.66810776 1533 P99999 CYCS Cytochrome c yes yes 0 0 0 0 0 6 0 1 40.509 40.509 3 3.3534E-17 10385 TMT1-5 134.91 102.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17648 1533 17441 26997 34872 34872 1 TGQATVASGIPAGWMGLDCGPESSK Unmodified 2476.1363 0.13625884 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 6.33 0.471 2 1 68.197 68.197 3;4 5.4507E-19 21309 TMT1-5 104.38 89.621 261.71 203.43 204.88 197.92 217.69 249.63 246 211 210 196 225 240 3 3 3 3 3 3 33588 17649 397 17442 26998;26999;27000 34873;34874;34875 34873 3 TGQATVASGIPAGWMGLDCGPESSKK Unmodified 2604.2312 0.23122186 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 7.5 0.5 1 1 61.747 61.747 4 1.5199E-22 18236 TMT1-7 113.93 111.65 253.34 326.74 245.63 211.07 203.38 435.52 239 327 255 210 218 414 3 3 3 3 3 3 45132 17650 397 17443 27001;27002 34876;34877;34878 34878 3 TGQEVVFVAEPDNK Unmodified 1531.7518 0.75183739 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 4 0 1 53.865 53.865 3 2.0354E-07 15748 TMT1-3 107.98 66.693 254.67 303.65 221.37 227.95 254 248.59 240 305 232 225 261 240 2 2 2 2 2 2 72276 17651 479 17444 27003 34879;34880 34879 2 TGQLAAIK Unmodified 800.4756 0.47560295 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 0 7 0 1 44.973 44.973 2 0.019479 11451 TMT1-6 89.355 30.439 202.45 201.39 247.6 195.6 205.81 232.91 191 206 249 196 213 224 1 1 1 1 1 1 174260 17652 2892 17445 27004 34881 34881 1 TGQSVDELFQK Unmodified 1250.6143 0.61428128 2349 Q969Q5 RAB24 Ras-related protein Rab-24 yes yes 0 0 0 0 0 6 0 1 57.414 57.414 3 0.0010504 17074 TMT1-5 59.57 40.299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17653 2349 17446 27005 34882 34882 1 TGQYSGIYDCAK Unmodified 1361.5922 0.59216562 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 5 0 1 45.988 45.988 3 0.027542 12400 TMT1-4 49.31 18.437 139.07 166.47 110.25 102.7 117.94 174.66 131 167 116 102 123 167 1 1 1 1 1 1 12697 17654 2019 17447 27006 34883 34883 1 TGSEIIR Unmodified 774.42357 0.42356738 2378 Q96C24;Q96C24-2 SYTL4 Synaptotagmin-like protein 4 yes no 0 0 0 0 0 4 0 1 33.238 33.238 2 0.0029041 7635 TMT1-3 88.643 22.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17655 2378 17448 27007 34884 34884 1 TGSGGPGNHPHGPDASAEGLNPYGLVAPR Unmodified 2781.3219 0.32190286 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 46.852 46.852 4 3.9098E-65 12772 TMT1-4 175.99 173.67 832.31 948.55 875.56 760.69 772.26 1074.9 785 958 897 757 807 1029 7 7 7 7 7 7 553310 17656 2112 17449 27008;27009;27010;27011;27012 34885;34886;34887;34888;34889;34890;34891 34887 7 TGSGGVASSSESNR Unmodified 1294.5749 0.57493566 1855 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 0 0 3 0 1 21.938 21.938 3 0.0194 4183 TMT1-2 49.482 33.258 7.4563 6.8891 3.3559 11.7 6.5347 7.2755 7 7 4 11 7 7 1 1 1 1 1 1 463.78 17657 1855 17450 27013 34892 34892 1 TGSQGQCTQVR Unmodified 1220.5568 0.55678317 1452 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 0 0 3.5 0.5 1 1 22.2 22.2 3 0.0011259 3764 TMT1-3 58.674 46.098 16.025 6.2601 6.4226 15.603 21.767 15.369 15 7 7 15 22 15 1 1 1 1 1 1 2220.7 17658 1452 17451 27014;27015 34893;34894 34894 2 TGSYGALAEITASK Unmodified 1367.6933 0.69325988 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 6 0 1 58.657 58.657 3 0.0078708 17576 TMT1-5 54.812 38.869 99.422 145.59 118.62 117.5 118.07 151.2 94 145 123 116 123 145 1 1 1 1 1 1 13048 17659 118 17452 27016 34895 34895 1 TGTAEMSSILEER Unmodified 1422.6661 0.66605885 888 P25705;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 3 0.707 1 2 1 54.113 54.113 2;3 6.4569E-47 15814 TMT1-3 220.5 158.54 283.32 475.79 310.42 277.02 326.85 498.09 268 470 326 276 341 476 4 4 4 4 4 4 185770 17660 888 17453 27017;27018;27019;27020 34896;34897;34898;34899 34899 4 TGTAYTFFTPNNIK Unmodified 1573.7777 0.77765821 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 9 0 1 63.276 63.276 3 6.2212E-05 16997 TMT1-8 80.96 55.892 77.032 132.42 105.76 86.358 129.2 112.51 73 131 109 87 131 109 1 1 1 1 1 1 12093 17661 764 17454 27021 34900 34900 1 TGTEVYR Unmodified 824.40283 0.40283194 749 P16671;P16671-3;P16671-4;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 3 0 1 29.121 29.121 2 0.0052347 7035 TMT1-2 134.85 82.168 608.77 798.41 702.27 846.19 611.29 835.36 575 800 731 823 649 800 1 1 1 1 1 1 185510 17662 749 17455 27022 34901 34901 1 TGTFCALSTVLER Unmodified 1453.7235 0.72351415 778 P18433-6;P18433 PTPRA Receptor-type tyrosine-protein phosphatase alpha yes no 0 0 0 0 0 7 0 1 65.416 65.416 2 0.002543 19611 TMT1-6 61.577 39.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17663 778 17456 27023 34902 34902 1 TGTIIVIDMLMENISTK Unmodified 1877.9842 0.98422187 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 8 0 1 96.59 96.59 3 1.4516E-24 31497 TMT1-7 147.7 119.85 58.368 61.079 57.044 63.645 38.358 107.64 55 62 59 62 43 102 2 2 2 2 2 2 11006 17664 936 17457 27024 34903;34904 34903 2 TGTIVVEGHELHDEDIR Unmodified 1918.9385 0.93846896 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 2 0 1 43.269 43.269 4 0.010049 12320 TMT1-1 47.568 29.203 92.813 161.75 133.67 122.82 193.96 157.56 88 160 138 123 196 153 2 2 2 2 2 2 10427 17665 1085 17458 27025 34905;34906 34906 2 TGTLAFER Unmodified 893.46068 0.46068117 807 P20292 ALOX5AP Arachidonate 5-lipoxygenase-activating protein yes yes 0 0 0 0 0 5 0 1 42.115 42.115 2 0.004402 10886 TMT1-4 76.605 32.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17666 807 17459 27026 34907 34907 1 TGTLQQLAK Unmodified 958.54475 0.54474515 2817 Q9P126-2;Q9P126 CLEC1B C-type lectin domain family 1 member B yes no 0 0 0 0 0 7 0 1 46.996 46.996 2 0.001231 12306 TMT1-6 122.44 73.648 115.17 151.08 172.15 145.29 156.04 135.19 109 152 174 145 160 131 1 1 1 1 1 1 17182 17667 2817 17460 27027 34908 34908 1 TGTLTQNR Unmodified 889.46174 0.4617438 481 P05023-3;P05023-4;P05023;P05023-2;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 5 0 1 27.184 27.184 2 0.045885 4961 TMT1-4 75.738 61.735 30.872 13.38 29.812 13.641 51.965 21.969 29 15 29 15 51 22 1 1 1 1 1 1 1817 17668 481 17461 27028 34909 34909 1 TGTLTTNQMSVCR Unmodified 1467.681 0.68099741 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 6.5 0.5 1 1 41.364 41.364 2;3 5.1474E-11 10597 TMT1-5 110.31 85.514 123.08 112.83 137.07 108.9 110.07 182.34 116 116 138 109 116 174 1 1 1 1 1 1 6874.1 17669 2344;748 17462 27029;27030 34910;34911 34910 2 TGTLVEEAFWIDK Unmodified 1507.7559 0.75586013 2897 Q9UKV3-5;Q9UKV3;Q9UKV3-3;Q9UKV3-2 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 0 6 0 1 75.26 75.26 3 2.4189E-05 24097 TMT1-5 80.522 67.322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17670 2897 17463 27031 34912 34912 1 TGTYIGIDAMLEGLEAENK Unmodified 2023.9772 0.97722223 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 5 0 1 82.529 82.529 3 0.019391 26775 TMT1-4 39.777 36.538 31.01 21.317 0 38.703 34.301 45.925 29 22 0 36 36 44 1 1 0 1 1 1 3997.2 17671 570 17464 27032 34913 34913 1 TGVAVNKPAEFTVDAK Unmodified 1645.8675 0.86753585 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5.8 2.48 1 1 2 1 51.111 51.111 3;4 2.3914E-19 14028 TMT1-7 120.24 83.472 5664.4 7798.7 7089.5 5657.6 6580.4 7842.4 5355 7800 7244 5676 6797 7533 7 7 7 7 7 7 1794300 17672 831 17465 27033;27034;27035;27036;27037 34914;34915;34916;34917;34918;34919;34920;34921 34921 8 TGVEADEWIK Unmodified 1146.5557 0.55570376 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 4 0 1 56.278 56.278 2 0.0003137 16749 TMT1-3 123.63 71.045 91.84 138.35 136.78 84.67 120.64 120.21 87 138 138 87 123 116 1 1 1 1 1 1 14565 17673 2922 17466 27038 34922 34922 1 TGVELGKPTHFTVNAK Unmodified 1697.9101 0.91006937 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 7 3.03 1 2 2 46.671 46.671 4;5 4.6744E-23 10274 TMT1-8 153.74 98.966 5369.3 7746.9 6415.6 4687.5 5609.4 7322.2 5076 7722 6577 4735 5809 7019 7 7 7 7 7 7 628250 17674 831 17467 27039;27040;27041;27042;27043 34923;34924;34925;34926;34927;34928;34929 34927 7 TGVHHYSGNNIELGTACGK Unmodified 2013.9327 0.93267208 1455 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 0 7 1 1 1 35.995 35.995 4 9.0608E-10 8619 TMT1-5 95.094 77.5 107.1 137.99 96.955 103.04 142.02 143.06 101 138 102 102 145 138 2 2 2 2 2 2 14747 17675 1455 17468 27044;27045 34930;34931 34930 2 TGVIEHEHPVNK Unmodified 1358.6943 0.69426293 1528 P98082-2;P98082-3;P98082 DAB2 Disabled homolog 2 yes no 0 0 0 0 0 4.5 0.5 1 1 31.272 31.272 4 0.00052975 6572 TMT1-4 80.979 57.128 122.32 189.5 200.54 159.76 168.42 181.74 116 189 203 160 174 175 2 2 2 2 2 2 19444 17676 1528 17469 27046;27047 34932;34933 34933 2 TGVIHEK Unmodified 782.42865 0.42865276 2437 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5 PRRC1 Protein PRRC1 yes no 0 0 0 0 0 5 0 1 30.077 30.077 3 0.010356 6111 TMT1-4 80.229 35.834 123.4 106.16 89.387 119.63 97.558 105.95 116 109 94 116 102 102 1 1 1 1 1 1 12048 17677 2437 17470 27048 34934 34934 1 TGVTGPYVLGTGLILYALSK Unmodified 2022.1401 0.14012888 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 9 0 1 95.243 95.243 3 9.9037E-13 29294 TMT1-8 86.213 68.724 23.167 44.653 35.922 29.548 58.547 52.695 22 44 37 30 59 51 2 2 2 2 2 2 4516.9 17678 875 17471 27049 34935;34936 34935 2 TGVVTDGVK Unmodified 874.476 0.47599688 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 5.5 0.5 1 1 40.726 40.726 2 0.0017622 10326 TMT1-4 113.71 45.949 245.41 336.9 306.28 221.1 349.25 286.38 232 337 312 225 353 278 2 2 2 2 2 2 22269 17679 1055 17472 27050;27051 34937;34938 34937 2 TGWFPSNYVR Unmodified 1225.588 0.58800695 1755;1821 Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;Q15052;Q15052-2 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 no no 0 0 0 0 0 9 0 1 58.386 58.386 2 0.008374 15057 TMT1-8 83.647 39.53 61.511 87.629 47.316 51.6 70.322 106.73 58 87 51 51 73 102 1 1 1 1 1 1 12181 17680 1755;1821 17473 27052 34939 34939 1 TGYESGEYEMLGEGLGVK Unmodified 1917.8666 0.86660915 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 4 0 1 66.481 66.481 3 7.7014E-06 20726 TMT1-3 80.638 63.357 54.198 64.951 33.145 36.746 33.328 76.867 51 65 36 36 36 73 1 1 1 1 1 1 10021 17681 1720 17474 27053 34940 34940 1 TGYTLDVTTGQR Unmodified 1310.6466 0.64664404 226;227;170 O43390;O43390-2;O43390-4;O60506-2;O60506;O60506-3;O60506-4 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 0 5 0 1 45.505 45.505 2 4.4134E-08 12201 TMT1-4 131.42 91.359 84.341 185.31 94.943 87.048 126.78 181.87 80 181 102 87 131 174 1 1 1 1 1 1 29209 17682 170;226;227 17475 27054 34941 34941 1 TGYVPSNYVER Unmodified 1283.6146 0.61461563 187 O43639 NCK2 Cytoplasmic protein NCK2 yes yes 0 0 0 0 0 3 0 1 44.118 44.118 2 0.0054561 12909 TMT1-2 86.114 68.129 30.598 43.916 50.071 52.12 33.977 37.406 29 44 51 51 36 36 1 1 1 1 1 1 6167.1 17683 187 17476 27055 34942 34942 1 THAVLVALK Unmodified 950.5913 0.59130141 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 9 0 1 45.183 45.183 3 0.010192 9871 TMT1-8 58.433 39.703 115.19 184.61 139.76 122.89 171.22 149.68 109 183 145 123 174 145 1 1 1 1 1 1 30067 17684 890 17477 27056 34943 34943 1 THAVLVALKR Unmodified 1106.6924 0.69241244 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 1 9 0 1 39.919 39.919 4 0.0029083 8066 TMT1-8 68.846 51.115 61.171 110.43 85.002 49.332 71.489 75.778 58 109 87 51 73 73 1 1 1 1 1 1 9749.1 17685 890 17478 27057 34944 34944 1 THEAEIVEGENHTYCIR Unmodified 2056.9273 0.92725235 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.8 0.748 2 2 1 38.297 38.297 3;4 1.7664E-43 10424 TMT1-1 203.52 197.98 425.1 450.51 486.92 389.05 493.99 567.94 401 458 493 391 508 546 7 7 7 7 7 7 296100 17686 831 17479 27058;27059;27060;27061;27062 34945;34946;34947;34948;34949;34950;34951 34945 7 THEAQIQEMR Unmodified 1241.5823 0.58226964 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 3.4 2.06 1 1 1 1 1 28.242 28.242 3 4.1661E-10 6359 TMT1-1 172.27 113.29 441.87 465.31 361.13 324.91 409.11 475.49 416 471 375 324 421 457 7 7 7 7 7 7 215130 17687 1019 17480 27063;27064;27065;27066;27067 34952;34953;34954;34955;34956;34957;34958;34959 34953 8 THEAQIQEMR Oxidation (M) 1257.5772 0.57718426 1019 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 0 2.75 0.433 1 3 26.195 26.195 3 0.0064179 5926 TMT1-2 81.09 66.528 363.19 337.84 347.91 292.1 393.96 442.87 342 346 354 293 404 426 9 9 9 9 9 9 32129 17688 1019 17480 27068;27069;27070;27071 34960;34961;34962;34963;34964;34965;34966;34967;34968 34966 198 9 THEDIEAQIR Unmodified 1210.5942 0.59421454 286 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 0 0 3 0 1 33.61 33.61 3 0.006225 8775 TMT1-2 69.672 45.328 77.636 71.504 55.8 51.059 72.216 52.305 73 73 58 51 73 51 1 1 1 1 1 1 5877.5 17689 286 17481 27072 34969 34969 1 THFGGGK Unmodified 702.34492 0.34492313 1449 P62847-2;P62847-3;P62847;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 0 7.5 0.5 1 1 27.709 27.709 3 0.01805 4896 TMT1-7 69.998 40.255 184.97 325.81 195.11 212.41 234.06 179.87 175 321 208 209 239 175 3 3 3 3 3 3 13797 17690 1449 17482 27073;27074 34970;34971;34972 34972 3 THGSEIINDLQGR Unmodified 1438.7165 0.71645494 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 41.25 41.25 3 0.0010495 10837 TMT1-3 75.589 48.26 91.85 138.38 135.03 123.91 132.16 189.17 87 138 138 123 138 181 1 1 1 1 1 1 25198 17691 251 17483 27075 34973 34973 1 THIALDGR Unmodified 881.47191 0.47191456 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 5.17 2.27 1 1 1 1 1 1 31.25 31.25 3 0.00016685 6563 TMT1-4 147.36 82.11 1841.8 2047.8 2142.7 1520.1 1943.3 2387.8 1738 2075 2165 1541 2003 2292 8 8 8 8 8 8 582800 17692 484 17484 27076;27077;27078;27079;27080;27081 34974;34975;34976;34977;34978;34979;34980;34981 34978 8 THIDTVINALK Unmodified 1223.6874 0.68738664 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 7 0 1 55.448 55.448 3 4.393E-06 15697 TMT1-6 118.4 88.93 77.17 92.872 116.06 78.381 113.86 112.95 73 94 116 80 116 109 1 1 1 1 1 1 13708 17693 369 17485 27082 34982 34982 1 THILLFLPK Unmodified 1080.6696 0.66955173 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 9 0 1 61.876 61.876 3 0.00042393 16389 TMT1-8 107.57 74.734 556.59 962.13 857.51 523.01 565.45 927.27 528 953 870 535 594 885 2 2 2 2 2 2 173180 17694 530 17486 27083 34983;34984 34983 2 THINIVVIGHVDSGK Unmodified 1587.8733 0.87328993 1490 Q5VTE0;P68104;P68104-2;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 0 8 0.816 1 1 1 46.837 46.837 4 5.4847E-06 12320 TMT1-7 97.235 76.142 1989.4 2958.7 2178.5 1975 2574.4 3047.8 1880 2941 2268 1970 2648 2928 7 7 7 7 7 7 249010 17695 1490 17487 27084;27085;27086 34985;34986;34987;34988;34989;34990;34991 34990 7 THINYGVK Unmodified 930.49232 0.49231565 1076 P40939;P40939-2 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 0 0 0 0 0 7 0 1 35.174 35.174 3 0.023737 7594 TMT1-6 60.118 36.562 169.64 227.58 149.89 195.66 105.53 198.46 160 227 160 189 116 189 1 1 1 1 1 1 29414 17696 1076 17488 27087 34992 34992 1 THIQDNHDGTYTVAYVPDVTGR Unmodified 2458.1513 0.15131528 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4 0 1 46.964 46.964 4 6.655E-29 13049 TMT1-3 132.01 114.27 223.51 329.41 206.28 195.45 344.96 384.58 211 327 218 196 351 370 2 2 2 2 2 2 99303 17697 831 17489 27088 34993;34994 34993 2 THKNPALK Unmodified 907.52395 0.52395013 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 6 3.56 1 1 1 28.074 28.074 4 0.0028139 4603 TMT1-8 101.54 48.07 2978.4 5541.9 4180.9 3418.2 3583.1 5644.6 2825 5463 4326 3417 3761 5391 10 10 10 10 10 10 145860 17698 1555;1556 17490 27089;27090;27091 34995;34996;34997;34998;34999;35000;35001;35002;35003;35004 35002 10 THLAPYSDELR Unmodified 1300.6412 0.64116473 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 3.5 0.5 1 1 39.518 39.518 3 3.2006E-05 10029 TMT1-3 110.08 96.398 106.69 176.78 133.35 108.26 155.88 189.56 101 175 138 109 160 182 2 2 2 2 2 2 52410 17699 431 17491 27092;27093 35005;35006 35006 2 THLELKK Unmodified 867.5178 0.51780212 1306 P55008;P55008-2;P55008-3 AIF1 Allograft inflammatory factor 1 yes no 0 0 0 0 1 7 0 1 36.256 36.256 4 0.017446 8093 TMT1-6 67.757 21.192 167.32 472.59 332.98 225.25 276.47 328.97 160 460 344 229 285 316 1 1 1 1 1 1 12512 17700 1306 17492 27094 35007 35007 1 THLENNR Unmodified 882.43078 0.43077802 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 3 0 1 17.452 17.452 3 0.010687 3137 TMT1-2 79.469 18.681 5.3347 3.8659 1.8176 1.9647 6.0086 5.1585 5 4 2 2 6 5 1 1 1 1 1 1 523.94 17701 1683 17493 27095 35008 35008 1 THLGLIMDGWNSMIR Unmodified 1742.8596 0.85963047 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 9 0 1 68.012 68.012 3 1.2183E-05 18866 TMT1-8 84.508 68.872 54.394 42.831 18.947 45.176 95.008 66.579 51 44 22 44 95 65 1 1 1 1 1 1 7757.8 17702 2744 17494 27096 35009 35009 1 THLPGFVEQAEALK Unmodified 1538.8093 0.80929269 947 P30044-2;P30044 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 3.5 2.5 1 1 58.637 58.637 3 1.3408E-18 17369 TMT1-5 154.72 113.44 464.43 848.6 573.48 479.99 672.96 717.4 440 836 599 482 688 691 3 3 3 3 3 3 140730 17703 947 17495 27097;27098 35010;35011;35012 35012 3 THLTELQR Unmodified 996.53524 0.53524309 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 30.71 30.71 3 0.0012397 6062 TMT1-7 105.81 70.877 85.108 70.879 63.038 58.601 55.101 83.708 80 73 65 58 58 80 1 1 1 1 1 1 2471.2 17704 1566 17496 27099 35013 35013 1 THLTSLK Unmodified 798.45995 0.45995289 1865 Q15631;Q15631-2 TSN Translin yes no 0 0 0 0 0 9 0 1 36.179 36.179 3 0.0044804 6818 TMT1-8 89.55 32.269 77.433 86.047 77.735 73.443 91.049 113.6 73 87 80 73 94 109 1 1 1 1 1 1 5708.9 17705 1865 17497 27100 35014 35014 1 THMQDLK Unmodified 871.42219 0.42218717 1883 Q16181;Q16181-2 SEPT7 Septin-7 no no 0 0 0 0 0 6 0 1 33.323 33.323 3 0.0044403 7513 TMT1-5 95.352 50.017 208.02 251.22 172.24 167.91 231.74 246.03 196 252 181 167 237 237 1 1 1 1 1 1 18708 17706 1883 17498 27101 35015 35015 1 THMQNIK Unmodified 870.43817 0.43817159 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 7 0 1 30.398 30.398 3 0.0063017 5856 TMT1-6 89.55 30.569 30.332 89.587 55.987 27.848 27.214 53.589 29 87 58 29 29 51 1 1 1 1 1 1 2739.3 17707 2864 17499 27102 35016 35016 1 THNDIIHNENMR Unmodified 1492.6841 0.68410895 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 3 0 1 27.291 27.291 4 0.00096549 6276 TMT1-2 77.157 58.082 61.423 87.387 62.171 58.504 62.985 67.493 58 87 65 58 65 65 1 1 1 1 1 1 7661.3 17708 720 17500 27103 35017 35017 1 THNSASWSDTLR Unmodified 1373.6324 0.63239096 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 8 0 1 34.664 34.664 3 8.7852E-05 7559 TMT1-7 99.498 72.526 46.778 34.419 43.711 35.82 49.076 76.418 44 36 44 36 51 73 1 1 1 1 1 1 5608.4 17709 671 17501 27104 35018 35018 1 THNVHVEIEQR Unmodified 1360.6848 0.68476088 2051 Q6WCQ1-3;Q6WCQ1;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein yes no 0 0 0 0 0 3 0 1 26.721 26.721 4 0.01299 6043 TMT1-2 55.261 35.654 70.486 33.088 27.728 29.396 34.472 53.382 66 36 29 29 36 51 1 1 1 1 1 1 3906.1 17710 2051 17502 27105 35019 35019 1 THPQWYPAR Unmodified 1154.5621 0.56212655 2790 Q9NZ01 TECR Very-long-chain enoyl-CoA reductase yes yes 0 0 0 0 0 6.5 0.5 1 1 34.497 34.497 3 0.01159 7952 TMT1-5 64.711 43.017 131.71 143.68 102.98 127.31 110.8 136.48 124 145 109 124 116 131 2 2 2 2 2 2 7160.3 17711 2790 17503 27106;27107 35020;35021 35020 2 THPQYSR Unmodified 887.42496 0.42496436 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 3.5 0.5 1 1 18.286 18.286 3 0.0081656 3469 TMT1-3 85.265 37.091 22.252 28.978 22.586 34.373 18.59 21.856 21 29 24 33 20 21 3 3 3 3 3 3 1831.9 17712 787 17504 27108;27109 35022;35023;35024 35024 3 THPVLYLFYEDMK Unmodified 1654.8065 0.8065155 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P50225-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 8 0 1 67.988 67.988 3 5.8424E-05 20643 TMT1-7 97.69 73.94 22.856 75.088 62.38 74.749 70.321 75.811 22 73 65 73 73 73 1 1 1 1 1 1 13336 17713 617;1214 17505 27110 35025 35025 1 THQDQYSFSTDTVECR Unmodified 1972.8221 0.82211857 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 3 0 1 39.915 39.915 3 4.1892E-18 11273 TMT1-2 142.74 134.14 38.065 82.136 24.96 29.143 56.712 76.2 36 80 29 29 58 73 1 1 1 1 1 1 18996 17714 699 17506 27111 35026 35026 1 THSDQFLVAFK Unmodified 1291.6561 0.65608651 1038 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 54.292 54.292 3 7.1424E-05 15125 TMT1-6 103.91 79.118 292.51 356.01 310.01 276.38 362.38 347.84 276 358 319 276 370 336 2 2 2 2 2 2 72090 17715 1038 17507 27112;27113 35027;35028 35027 2 THSIESSGK Unmodified 944.45632 0.45632407 1123 P45985;P45985-2 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 0 0 0 0 0 5 0 1 25.938 25.938 3 0.022183 4534 TMT1-4 55.549 31.395 15.941 14.659 13.524 14.908 36.201 22.419 15 15 14 15 36 22 1 1 1 1 1 1 867.98 17716 1123 17508 27114 35029 35029 1 THSQLLIIDR Unmodified 1194.6721 0.67207093 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 6 0 1 41.931 41.931 3 0.0004813 10939 TMT1-5 99.215 91.57 122.89 174.9 116.75 117.15 142.44 112.13 116 174 123 116 145 109 1 1 1 1 1 1 12976 17717 48 17509 27115 35030 35030 1 THTCPPCPAPELLGGPSVFLFPPKPK Unmodified 2843.4503 0.45026318 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region yes no 0 0 0 0 1 9 0 1 66.936 66.936 5 0.00271 18508 TMT1-8 43.523 23.974 177.08 224.72 163.84 225.7 149.41 220.66 167 225 174 218 160 211 2 2 2 2 2 2 13441 17718 420 17510 27116 35031;35032 35032 2 THTGEKPYQCSECGK Unmodified 1780.7509 0.75086789 753 P17026;Q7Z7L9;Q86T29;Q86T29-2;Q9NYW8 ZNF22;ZSCAN2;ZNF605;RBAK Zinc finger protein 22;Zinc finger and SCAN domain-containing protein 2;Zinc finger protein 605;RB-associated KRAB zinc finger protein yes no 0 0 0 0 1 5 0 1 29.98 29.98 4 0.00038784 6106 TMT1-4 76.548 24.905 54.167 42.199 57.674 51.105 63.838 52.544 51 44 58 51 65 51 1 1 1 1 1 1 2558.6 17719 753 17511 27117 35033 35033 1 THTMGGDFSGK Unmodified 1136.4921 0.49205765 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 6 0 1 35.178 35.178 3 3.0632E-05 8270 TMT1-5 87.001 61.342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17720 39 17512 27118 35034 35034 1 THTQDAVPLTLGQEFSGYVQQVK Unmodified 2545.2813 0.28126682 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 0 6 0 1 67.754 67.754 3 1.2986E-17 21153 TMT1-5 107.47 93.596 30.802 28.296 28.889 14.277 21.059 37.775 29 29 29 15 22 36 1 1 1 1 1 1 9278.7 17721 553 17513 27119 35035 35035 1 THTYECR Unmodified 965.40251 0.40251436 969 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 0 3 0 1 18.412 18.412 3 0.044474 3224 TMT1-2 51.43 36.06 2.0814 7.2284 4.7381 5.1117 3.7698 5.2224 2 7 5 5 4 5 1 1 1 1 1 1 356.04 17722 969 17514 27120 35036 35036 1 THVADFAPEVAWVTR Unmodified 1697.8526 0.85255449 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 6 0 1 60.851 60.851 3 9.9664E-05 18412 TMT1-5 80.411 65.535 77.411 102.18 67.769 105.43 107.15 58.77 73 102 73 102 109 58 1 1 1 1 1 1 18991 17723 543 17515 27121 35037 35037 1 THVTHHPLSDHEATLR Unmodified 1849.9183 0.91834264 629 P10321;P10321-2 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 0 0 0 0 0 6.67 0.943 2 1 25.425 25.425 4;5 3.2995E-05 4186 TMT1-7 78.932 0 50.688 56.805 89.059 31.683 45.591 61.593 48 58 87 33 47 59 3 3 3 2 3 3 4565.2 17724 629 17516 27122;27123;27124 35038;35039;35040 35040 3 THYDPPR Unmodified 884.41407 0.41406533 983;1325 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 0 3 0 1 23.169 23.169 3 0.0022353 4684 TMT1-2 104.21 76.905 146.21 180.04 160.91 185.06 169.11 158.27 138 181 167 181 175 153 2 2 2 2 2 2 17387 17725 983;1325 17517 27125 35041;35042 35042 2 THYIVGYNLPSYEYLYNLGDQYALK Unmodified 2996.4596 0.45962512 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 8 0 1 76.494 76.494 3 2.6333E-14 24059 TMT1-7 95.835 83.402 30.624 67.733 25.485 37.592 12.621 39.082 29 66 29 36 15 37 1 1 1 1 1 1 11654 17726 478 17518 27126 35043 35043 1 THYSNIEANESEEVR Unmodified 1776.7915 0.79147037 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 3 0.816 1 1 1 33.539 33.539 3 8.8833E-44 7572 TMT1-3 181.87 173.71 107.96 152.43 120.66 85.79 112.16 152.44 102 152 124 87 116 146 3 3 3 3 3 3 62073 17727 475 17519 27127;27128;27129 35044;35045;35046;35047 35047 4 TIAECLADELINAAK Unmodified 1630.8236 0.82362212 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 5.67 0.471 1 2 85.239 85.239 2;3 4.6842E-11 27753 TMT1-4 126.32 107.25 255.07 364.3 282.89 222.57 403.17 328.55 241 363 292 226 406 319 5 5 5 5 5 5 60713 17728 1136 17520 27130;27131;27132 35048;35049;35050;35051;35052 35048 5 TIAEIFGNPNYLR Unmodified 1506.7831 0.78307794 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 8 0 1 70.568 70.568 3 0.0013354 21677 TMT1-7 73.881 62.349 30.699 51.752 26.465 37.119 34.667 37.387 29 51 29 36 36 36 1 1 1 1 1 1 11076 17729 1886 17521 27133 35053 35053 1 TIAEQAVAAGVPVEVIK Unmodified 1693.9614 0.96143623 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 6 0 1 67.962 67.962 3 1.3451E-11 21247 TMT1-5 116.82 94.283 46.287 80.541 87.223 41.414 78.67 90.497 44 80 87 44 80 87 1 1 1 1 1 1 11796 17730 1564 17522 27134 35054 35054 1 TIAIIAEGIPEALTR Unmodified 1566.8981 0.8981077 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 6 0 1 76.252 76.252 2 3.4887E-14 24478 TMT1-5 132.14 94.667 23.256 36.266 28.125 21.542 44.016 29.658 22 36 29 22 44 29 1 1 1 1 1 1 8176.3 17731 1283 17523 27135 35055 35055 1 TIAMDGTEGLVR Unmodified 1261.6336 0.63363651 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 4.75 0.829 2 1 1 52.818 52.818 2;3 7.4825E-09 15054 TMT1-4 150.04 84.639 368.53 564.24 340.27 376.68 395.85 579.27 348 559 363 370 414 554 4 4 4 4 4 4 131330 17732 508 17524 27136;27137;27138;27139 35056;35057;35058;35059;35060 35058 5 TIAPALVSK Unmodified 898.54877 0.54876789 514 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 0 8.5 0.5 1 1 51.79 51.79 2 1.1636E-08 14386 TMT1-7 169.12 85.508 4269.7 7367.9 5262.6 4221.1 5757.2 6841.5 4043 7278 5466 4248 5914 6572 5 5 5 5 5 5 1061500 17733 514 17525 27140;27141 35061;35062;35063;35064;35065 35062 5 TIAQDYGVLK Unmodified 1106.5972 0.59717465 1606 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 0 6 0 1 54.84 54.84 2 5.8173E-14 16029 TMT1-5 180.67 156.52 662.75 992.26 663.57 597.78 633.35 1012.7 626 985 696 594 665 967 2 2 2 2 2 2 150080 17734 1606 17526 27142 35066;35067 35066 2 TIAQGNLSNTDVQAAK Unmodified 1629.8322 0.83221298 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 5.5 0.5 1 1 46.271 46.271 3 5.6525E-20 12622 TMT1-5 120.77 99.466 99.247 152.66 142.08 115.69 139.87 188.95 94 152 145 116 145 181 1 1 1 1 1 1 21540 17735 851 17527 27143;27144 35068;35069 35069 2 TIASQHPNTR Unmodified 1123.5734 0.57341951 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 6.67 1.7 1 1 1 21.494 21.494 3 1.8411E-06 3901 TMT1-8 139.43 84.822 14.828 18.939 16.607 12.925 15.645 14.478 14 19 17 13 16 14 4 4 4 4 4 4 2524.3 17736 477 17528 27145;27146;27147 35070;35071;35072;35073 35073 4 TIATALEYVYK Unmodified 1270.6809 0.68090428 1508 P78537-2;P78537 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 0 0 0 0 0 7.5 0.5 1 1 70.852 70.852 2;3 4.393E-06 21780 TMT1-7 118.4 88.149 92.423 84.932 83.969 127.63 95.887 113.46 87 87 88 123 101 109 2 2 2 2 2 2 9280 17737 1508 17529 27148;27149 35074;35075 35075 2 TIATSQNR Unmodified 889.46174 0.4617438 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 5 0 1 25.005 25.005 2 0.0033234 4193 TMT1-4 132.08 67.327 25.563 18.218 16.4 17.33 14.542 10.245 24 19 17 17 15 10 1 1 1 1 1 1 1970.5 17738 2479 17530 27150 35076 35076 1 TIAVDFASEDIYDK Unmodified 1585.7512 0.75116869 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 0 5 0 1 68.136 68.136 3 5.9223E-06 21071 TMT1-4 101.3 89.612 176.97 176.93 222.8 205.19 181.29 172.85 167 181 225 203 188 167 2 2 2 2 2 2 16084 17739 1948 17531 27151 35077;35078 35077 2 TIAVDFASEDIYDKIK Unmodified 1826.9302 0.93019569 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 1 6 0 1 69.945 69.945 3 9.8579E-07 22035 TMT1-5 100.45 74.497 68.925 79.293 70.573 74.26 70.343 75.811 65 80 73 73 73 73 1 1 1 1 1 1 12584 17740 1948 17532 27152 35079 35079 1 TICAGALIAK Unmodified 1016.5689 0.56885141 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 8 0 1 55.267 55.267 2 5.3096E-05 15716 TMT1-7 145.92 78.161 139.55 112.76 74.793 96.479 95.984 182.75 131 116 80 94 102 174 1 1 1 1 1 1 11519 17741 671 17533 27153 35080 35080 1 TICAILENYQTEK Unmodified 1581.7709 0.77085827 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 6 0 1 65.787 65.787 3 0.0021095 20384 TMT1-5 69.258 47.499 46.588 50.08 62.366 106.05 91.419 59.219 44 51 65 102 94 58 1 1 1 1 1 1 11475 17742 1186 17534 27154 35081 35081 1 TIDDLEDELYAQK Unmodified 1551.7304 0.73043325 521;518 P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 3 0.816 1 1 1 70.281 70.281 3 6.2359E-07 22120 TMT1-3 94.191 62.316 99.585 107.19 123.76 77.952 112.3 158.83 94 109 124 80 116 152 3 3 3 3 3 3 19736 17743 521;518 17535 27155;27156;27157 35082;35083;35084;35085 35085 4 TIDDLEDK Unmodified 947.44476 0.44475633 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 0 2.5 0.5 1 1 49.869 49.869 2;3 1.3451E-07 14908 TMT1-1 168.08 102.4 571.22 719.86 588 485.34 923.5 633.5 539 722 606 492 925 619 2 2 2 2 2 2 90859 17744 519;520 17536 27158;27159 35086;35087 35086 2 TIDDLEDKLK Unmodified 1188.6238 0.62378333 519;520 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 1 5.33 0.471 2 1 59.12 59.12 2;3;4 0.0010126 17671 TMT1-5 93.096 55.984 922.27 1249.8 1010.9 804.53 918.31 1576 871 1249 1041 807 965 1503 3 3 3 3 3 3 854750 17745 519;520 17537 27160;27161;27162 35088;35089;35090 35090 3 TIDDLEEK Unmodified 961.46041 0.4604064 1486;1487 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain no no 0 0 0 0 0 3.38 2.34 1 3 1 2 1 48.804 48.804 2 6.4125E-19 14910 TMT1-2 201.49 110.71 20968 28374 25224 19465 25013 30318 19815 28392 25785 19615 25763 29110 9 9 9 9 9 9 2547800 17746 1486;1487 17538 27163;27164;27165;27166;27167;27168;27169;27170 35091;35092;35093;35094;35095;35096;35097;35098;35099;35100;35101 35097 11 TIDDLEETLASAK Unmodified 1404.6984 0.69840484 552 P07951-2 TPM2 Tropomyosin beta chain no no 0 0 0 0 0 4.5 0.5 1 1 71.898 71.898 3 7.7533E-11 22926 TMT1-3 130.69 87.303 355.25 325.27 431.7 250.75 525.61 380.49 335 335 429 262 526 371 5 5 5 5 5 5 55652 17747 552 17539 27171;27172 35102;35103;35104;35105;35106 35104 5 TIDGILLLIER Unmodified 1254.7547 0.75473792 1731 Q13620-3;Q13620-1;Q13620 CUL4B Cullin-4B no no 0 0 0 0 0 7 0 1 84.827 84.827 2 2.5739E-06 27163 TMT1-6 130.63 113.85 46.74 34.312 50.256 59.067 70.785 83.26 44 36 51 58 73 80 1 1 1 1 1 1 10287 17748 1731 17540 27173 35107 35107 1 TIDGQQTIIACIESHQFQPK Unmodified 2313.1423 0.1423305 1277 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 0 6.25 0.433 3 1 65.239 65.239 3;4 1.975E-31 20125 TMT1-5 152.01 128.72 406.24 574.14 486.9 419.48 561.24 548.96 384 573 501 420 573 530 5 5 5 5 5 5 158260 17749 1277 17541 27174;27175;27176;27177 35108;35109;35110;35111;35112 35109 5 TIDMELVKR Unmodified 1103.6009 0.60087982 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 1 7 0 1 50.027 50.027 3 0.029493 13538 TMT1-6 58.955 34.111 122.66 174.25 156.58 122.7 128.18 306.55 116 174 160 123 138 291 1 1 1 1 1 1 10774 17750 415 17542 27178 35113 35113 1 TIDPELLGK Unmodified 984.54916 0.54916182 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 5 0 1 59.583 59.583 2 0.0056179 17750 TMT1-4 66.504 52.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17751 725 17543 27179 35114 35114 1 TIDQIHK Unmodified 853.46577 0.46576654 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 6 0 1 36.918 36.918 3 0.016717 8964 TMT1-5 71.692 14.411 210.22 304.3 298.02 235.89 286.54 295.63 199 304 303 237 294 285 1 1 1 1 1 1 14901 17752 1584 17544 27180 35115 35115 1 TIDWVAFAEIIPQNQK Unmodified 1871.9781 0.97814893 316 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 0 8 0 2 84.588 84.588 3;4 6.425E-16 27136 TMT1-7 133.48 113.43 423.09 479.07 441.25 331.59 381.51 478.41 399 484 450 334 395 459 4 4 4 4 4 4 99974 17753 316 17545 27181;27182 35116;35117;35118;35119 35117 4 TIEAEAAHGTVTR Unmodified 1354.6841 0.68409218 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 4 1.41 1 1 1 1 1 31.829 31.829 3 1.4307E-28 6710 TMT1-4 194.83 161.83 321.29 512.32 390.26 374.19 369.91 485.13 304 508 406 370 386 465 5 5 5 5 5 5 97931 17754 1164 17546 27183;27184;27185;27186;27187 35120;35121;35122;35123;35124;35125 35124 6 TIEECEVILMVGLPGSGK Unmodified 1930.9744 0.97438546 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 6 0 1 78.542 78.542 3 1.265E-10 25385 TMT1-5 87.287 71.165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17755 1915 17547 27188 35126 35126 1 TIEGSGR Unmodified 718.36097 0.36096712 701 P14317;P14317-2 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 0 0 3 0 1 23.644 23.644 2 0.0021345 4830 TMT1-2 143.56 96.79 53.89 72.729 78.315 81.036 92.312 66.656 51 73 80 80 94 65 1 1 1 1 1 1 7739.3 17756 701 17548 27189 35127 35127 1 TIELDGK Unmodified 774.41233 0.41233399 1444;1366;2616;2333 P62820;P62820-3;Q9H0U4;P61006;P61006-2;Q92930 RAB1A;RAB1B;RAB8A;RAB8B Ras-related protein Rab-1A;Ras-related protein Rab-1B;Ras-related protein Rab-8A;Ras-related protein Rab-8B no no 0 0 0 0 0 4.5 0.5 1 1 47.335 47.335 2 0.0034955 12917 TMT1-4 139.31 25.29 1441.2 2217.6 2064.2 1737.8 1772.7 2281.8 1365 2208 2109 1733 1846 2188 3 3 3 3 3 3 325990 17757 1444;2616;1366;2333 17549 27190;27191 35128;35129;35130 35129 3 TIELDGKR Unmodified 930.51345 0.51344502 1366 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 1 5.5 0.5 1 1 38.617 38.617 3 0.0089815 9477 TMT1-4 82.75 22.632 495.79 453.93 506.01 385.19 522.55 563.93 467 466 511 389 535 543 2 2 2 2 2 2 49147 17758 1366 17550 27192;27193 35131;35132 35131 2 TIESETVR Unmodified 933.47673 0.47672516 184 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 0 2 0 1 33.223 33.223 2 0.025306 8267 TMT1-1 85.161 46.79 39.316 43.704 27.589 21.752 34.567 60.842 37 44 29 22 36 58 1 1 1 1 1 1 2296.6 17759 184 17551 27194 35133 35133 1 TIESILEPVAQQISHLVIMHEEGEVDGK Oxidation (M) 3116.57 0.5699802 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 7 0.816 1 1 1 87.493 87.493 4 1.2947E-16 28045 TMT1-6 97.771 87.533 133.32 192.74 152.77 133.52 145.84 173.86 126 192 158 133 151 167 4 4 4 4 4 4 36389 17760 776 17552 27195;27196;27197 35134;35135;35136;35137 35136 147 4 TIESILEPVAQQISHLVIMHEEGEVDGK Unmodified 3100.5751 0.57506558 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 7.33 0.943 1 3 1 1 90.077 90.077 4;5 3.3979E-54 29538 TMT1-5 160.52 148.03 1203.7 1312.5 1094.4 1049.1 1181 1518.4 1134 1327 1133 1039 1225 1456 20 20 20 19 20 20 233150 17761 776 17552 27198;27199;27200;27201;27202;27203 35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157 35139 20 TIEYLEEVAITFAK Unmodified 1625.8552 0.85523983 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 6.5 0.5 1 1 92.06 92.06 3 2.912E-10 30393 TMT1-5 119.25 106.12 70.068 64.304 71.478 98.298 67.882 115.32 66 66 74 95 73 110 3 3 3 3 3 3 16482 17762 1076 17553 27204;27205 35158;35159;35160 35159 3 TIEYLQPNPASR Unmodified 1387.7096 0.70957864 2501 Q99961;Q99961-3;Q99962 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 yes no 0 0 0 0 0 5 0 1 49.008 49.008 2 0.00017002 13658 TMT1-4 103.34 80.424 23.103 59.586 33.981 28.727 50.208 52.933 22 58 36 29 51 51 1 1 1 1 1 1 7167.2 17763 2501 17554 27206 35161 35161 1 TIFAYFTGSK Unmodified 1133.5757 0.57571092 2513 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 0 9 0 1 71.592 71.592 2 8.0933E-07 20324 TMT1-8 155.42 99.41 160.7 270.36 173.05 129.35 187.12 165.22 152 267 181 131 190 160 1 1 1 1 1 1 28261 17764 2513 17555 27207 35162 35162 1 TIFINQPQLTK Unmodified 1301.7343 0.73433683 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 9 0 1 60.101 60.101 3 0.002127 15774 TMT1-8 70.488 41.015 176.3 268.95 258.16 161.9 278.75 286.26 167 268 261 167 283 276 2 2 2 2 2 2 10389 17765 2968 17556 27208 35163;35164 35164 2 TIFPLFMK Unmodified 995.55141 0.55141043 2287 Q8WYA6-4;Q8WYA6;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 0 9 0 1 76.974 76.974 2 0.0041788 22404 TMT1-8 95.352 54.365 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17766 2287 17557 27209 35165 35165 1 TIFQGIAAK Unmodified 947.54402 0.54401687 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 9 0 1 57.893 57.893 2 9.0793E-07 14954 TMT1-8 169.12 82.257 734.27 828.75 863.59 570.34 644.95 1138.2 693 839 871 580 679 1085 2 2 2 2 2 2 74747 17767 1260 17558 27210 35166;35167 35167 2 TIFVLTK Unmodified 820.50584 0.50584045 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 9 0 1 62.34 62.34 2 0.011921 16631 TMT1-8 114.93 29.084 130.68 120.12 115.8 211.45 187.69 221.7 123 123 123 203 196 213 1 1 1 1 1 1 17186 17768 220 17559 27211 35168 35168 1 TIGDLLQVLQEMGHR Unmodified 1708.893 0.89303909 3043 Q9Y616 IRAK3 Interleukin-1 receptor-associated kinase 3 yes yes 0 0 0 0 0 9 0 1 85.191 85.191 3 2.0238E-11 25560 TMT1-8 118.52 94.566 30.765 36.825 28.034 21.986 20.704 37.785 29 37 29 22 22 36 1 1 1 1 1 1 3343.4 17769 3043 17560 27212 35169 35169 1 TIGGGDDSFNTFFSETGAGK Unmodified 2006.8858 0.88576469 1491;2068;2510;622 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3 TUBA3E;TUBA1B;TUBA1A;TUBA1C Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 0 5.71 0.452 2 5 70.46 70.46 2;3;4 5.7192E-36 22263 TMT1-5 162.37 105.86 2312.9 3243.1 2382.5 2172.6 2346.6 3083.1 2184 3232 2482 2158 2440 2955 10 10 10 10 10 10 781130 17770 622;1491;2068;2510 17561 27213;27214;27215;27216;27217;27218;27219 35170;35171;35172;35173;35174;35175;35176;35177;35178;35179;35180 35175 11 TIGGGDDSFTTFFCETGAGK Unmodified 2066.8891 0.88913551 1492 P68366-2;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 0 0 0 5 1.66 1 4 2 1 74.126 74.126 3;4 1.2921E-39 23200 TMT1-5 172.97 158.04 1403.9 1670.6 1396 1181.5 1157.4 1876.2 1324 1681 1438 1177 1220 1791 10 10 10 10 10 10 492940 17771 1492 17562 27220;27221;27222;27223;27224;27225;27226;27227 35181;35182;35183;35184;35185;35186;35187;35188;35189;35190 35186 10 TIGTGLVTNTLAMTEEEK Unmodified 1906.9558 0.95575851 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 5 0 2 69.693 69.693 3;4 2.3839E-19 21704 TMT1-4 135.09 105.11 91.861 184.82 93.874 110.85 142.97 135.57 87 181 102 109 146 131 2 2 2 2 2 2 27469 17772 1180 17563 27228;27229 35191;35192 35191 2 TIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGK Unmodified 3512.7457 0.74571274 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 1 6 0 1 76.569 76.569 5 0.0002038 24628 TMT1-5 42.865 37.959 38.005 74.412 41.699 28.129 57.565 52.723 36 73 44 29 58 51 1 1 1 1 1 1 6332.7 17773 1233 17564 27230 35193 35193 1 TIGVITK Unmodified 730.45889 0.45889025 1226;1591;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM1;DNM3 Dynamin-2;Dynamin-1;Dynamin-3 no no 0 0 0 0 0 8 0 1 47.808 47.808 2 0.0097947 12694 TMT1-7 110.81 51.602 480.75 632.08 539.4 417.47 559.85 683.32 454 633 553 421 576 656 2 2 2 2 2 2 40596 17774 1226;1591;2942 17565 27231 35194;35195 35194 2 TIGYPWTLVYGTGK Unmodified 1554.8082 0.80823006 2181 Q8N573-2;Q8N573-5;Q8N573-8;Q8N573;Q8N573-7;Q8N573-4;Q8N573-6 OXR1 Oxidation resistance protein 1 yes no 0 0 0 0 0 9 0 1 74.948 74.948 3 0.00045421 21606 TMT1-8 67.115 45.242 46.825 34.549 35.722 20.67 66.284 52.475 44 36 36 22 66 51 1 1 1 1 1 1 5354.8 17775 2181 17566 27232 35196 35196 1 TIIGSFNGALAAVPVQDLGSTVIK Unmodified 2370.3159 0.31586142 2559 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 0 0 0 0 0 7 0 1 85.005 85.005 3 0.0078987 27221 TMT1-6 39.883 22.601 38.328 35.377 20.514 21.868 50.78 45.455 36 36 22 22 51 44 1 1 1 1 1 1 6299.3 17776 2559 17567 27233 35197 35197 1 TIIPLISQCTPK Unmodified 1369.7639 0.7639224 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 64.499 64.499 3 1.7521E-07 17437 TMT1-8 115.92 75.471 334.9 454.14 315.32 311.74 324.65 485.36 316 453 331 308 340 464 2 2 2 2 2 2 99849 17777 1075 17568 27234 35198;35199 35198 2 TIIQNPTDQQK Unmodified 1284.6674 0.66737948 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 6 0 1 43.729 43.729 2 3.1348E-08 11663 TMT1-5 155.33 107.37 77.392 117.23 58.151 106.73 68.337 90.792 73 116 65 102 73 87 1 1 1 1 1 1 14254 17778 2943 17569 27235 35200 35200 1 TIISYIDEQFER Unmodified 1512.746 0.74602373 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 4.67 0.471 1 2 75.491 75.491 2;3 2.7411E-33 23970 TMT1-4 205.13 152.65 138.84 165.84 148.92 134.26 176.91 212.42 131 167 153 134 182 204 3 3 3 3 3 3 66369 17779 1812 17570 27236;27237;27238 35201;35202;35203 35202 3 TIITYPWFQNSSVILFLNK Unmodified 2283.2303 0.23034087 1211 P50148;P29992 GNAQ;GNA11 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11 yes no 0 0 0 0 0 9 0 2 93.622 93.622 3;4 5.9014E-21 28796 TMT1-8 124.29 104.73 99.259 131.11 158.24 146.29 147.09 181.29 94 132 160 145 153 174 3 3 3 3 3 3 21435 17780 1211 17571 27239;27240 35204;35205;35206 35206 3 TIITYPWFQNSSVILFLNKK Unmodified 2411.3253 0.32530389 1211 P50148;P29992 GNAQ;GNA11 Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-11 yes no 0 0 0 0 1 9 0 1 84.842 84.842 4 0.0041843 25518 TMT1-8 45.257 30.167 61.861 33.56 34.281 52.663 55.118 91.169 58 36 36 51 58 87 1 1 1 1 1 1 9493 17781 1211 17572 27241 35207 35207 1 TILALMK Unmodified 788.483 0.48299651 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 9 0 1 64.965 64.965 2 0.0097596 17644 TMT1-8 122.79 34.056 230.81 357.45 217.93 235.45 272.91 357.85 218 354 232 232 283 343 2 2 2 2 2 2 45569 17782 1234 17573 27242 35208;35209 35208 2 TILATGELGTLTNVYK Unmodified 1692.9298 0.92980175 2982 Q9Y315 DERA Deoxyribose-phosphate aldolase yes yes 0 0 0 0 0 8 0 1 70.974 70.974 3 4.0377E-28 21870 TMT1-7 146.96 111.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17783 2982 17574 27243 35210 35210 1 TILEENIQDQDVLLLIK Unmodified 1996.1092 0.10922268 2526 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 83.983 83.983 3 0.0056998 27321 TMT1-4 52.172 33.34 38.435 13.009 21.486 30.157 13.769 15.597 36 15 22 29 15 15 1 1 1 1 1 1 2353 17784 2526 17575 27244 35211 35211 1 TILGTIMNTIK Unmodified 1203.6897 0.68969482 1973 Q5T1M5;Q5T1M5-2 FKBP15 FK506-binding protein 15 yes no 0 0 0 0 0 9 0 1 78.125 78.125 2 0.0018504 22852 TMT1-8 87.618 45.634 30.652 51.622 34.403 29.121 27.962 30.116 29 51 36 29 29 29 1 1 1 1 1 1 4957.8 17785 1973 17576 27245 35212 35212 1 TILLNTK Unmodified 801.496 0.49600404 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 9 0 1 50.465 50.465 2 0.014027 11947 TMT1-8 105.57 20.504 247.6 442.62 210.81 254.22 401.81 417.07 234 435 231 251 409 402 1 1 1 1 1 1 39584 17786 1139 17577 27246 35213 35213 1 TILPAAAQDVYYR Unmodified 1479.7722 0.7721789 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 6 0 1 58.452 58.452 2 0.0031409 17486 TMT1-5 59.116 22.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17787 478 17578 27247 35214 35214 1 TILPLINFK Unmodified 1057.6536 0.65356732 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 9 0 1 75.484 75.484 2 0.00021582 21793 TMT1-8 140.5 62.712 162.56 173.16 124.24 141.21 118.02 151.2 153 175 131 138 124 145 2 2 2 2 2 2 13335 17788 750 17579 27248 35215;35216 35215 2 TILQCALNRPAFFAER Unmodified 1905.9883 0.98833646 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 1 9 0 1 62.758 62.758 3 7.3996E-06 16796 TMT1-8 78.228 57.847 84.867 85.321 91.183 111.76 103.42 159.08 80 87 94 109 109 152 1 1 1 1 1 1 20750 17789 804 17580 27249 35217 35217 1 TILSLMTR Unmodified 933.53174 0.53173762 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 9 0 1 63 63 2 0.0071206 16888 TMT1-8 104.75 61.5 122.41 210.25 167.88 160.71 221.3 194.09 116 208 174 160 225 188 1 1 1 1 1 1 22070 17790 1283 17581 27250 35218 35218 1 TILSNQTVDIPENVDITLK Unmodified 2112.1314 0.13141469 996 Q5IFJ7;P32969 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 0 6 0 1 73.06 73.06 3 1.9666E-13 23226 TMT1-5 111.63 88.975 69.053 72.094 55.123 66.424 70.997 67.264 65 73 58 65 73 65 1 1 1 1 1 1 24839 17791 996 17582 27251 35219 35219 1 TIMVDDSK Unmodified 907.43208 0.43208315 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.33 1.25 1 1 1 50.099 50.099 2 2.5416E-07 12455 TMT1-3 140.5 70.503 1727.5 2011.1 1553.3 1331.8 1385.1 2324.9 1628 2024 1610 1327 1459 2218 3 3 3 3 3 3 184250 17792 3010 17583 27252;27253;27254 35220;35221;35222;35223 35220 4 TINEVENQILTR Unmodified 1428.7573 0.75725712 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;O43707-3 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 4.8 2.48 1 2 1 1 58.443 58.443 2;3 3.0974E-69 17634 TMT1-3 250.26 174.09 2227.4 2944.5 2575.7 2108.7 2862.4 3225.1 2104 2949 2641 2119 2935 3102 7 7 7 7 7 7 1610600 17793 672;195 17584 27255;27256;27257;27258;27259 35224;35225;35226;35227;35228;35229;35230 35228 7 TINLYPLTNYTFGTK Unmodified 1744.9036 0.903587 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 9 0 1 74.953 74.953 3 1.0365E-16 21611 TMT1-8 131.72 100.83 68.638 133.54 72.828 120.63 96.449 136.89 65 131 80 116 102 131 1 1 1 1 1 1 19512 17794 204 17585 27260 35231 35231 1 TINQWVK Unmodified 887.4865 0.48650199 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 8.5 0.5 1 1 51.083 51.083 2 0.0090685 14100 TMT1-7 113.89 39.172 580.9 1246.7 858.97 808.71 887.17 954.34 552 1222 899 802 915 919 3 3 3 3 3 3 112010 17795 967 17586 27261;27262 35232;35233;35234 35233 3 TINWTLLEK Unmodified 1116.6179 0.61791009 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 8 0 1 68.42 68.42 2 0.00061412 20836 TMT1-7 132.88 75.277 254.13 230.73 193.48 199.29 181.38 238.94 239 236 201 196 190 229 1 1 1 1 1 1 40834 17796 1596 17587 27263 35235 35235 1 TIPGDTAWLLYDTYGFPVDLTGLIAEEK Unmodified 3097.5536 0.55358508 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 103.39 103.39 4 3.0314E-05 33365 TMT1-6 53.777 42.569 12.737 13.843 11.643 10.015 11.774 9.258 12 14 12 10 12 9 2 2 2 2 2 2 1880.8 17797 1184 17588 27264 35236;35237 35236 2 TIPIDGDFFSYTR Unmodified 1530.7355 0.73545904 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 6.33 0.471 2 1 71.691 71.691 2;3 8.2974E-05 22655 TMT1-5 103.34 100.36 106.56 135.41 190.09 129.06 148.41 135.41 101 137 189 131 152 131 3 3 3 3 3 3 26587 17798 483 17589 27265;27266;27267 35238;35239;35240 35238 3 TIPIDGNFFTYTR Unmodified 1543.7671 0.76709352 386 P00352 ALDH1A1 Retinal dehydrogenase 1 yes yes 0 0 0 0 0 8 0 1 69.946 69.946 2 0.00052658 21459 TMT1-7 91.858 42.44 30.727 35.641 35.376 28.787 42.636 29.697 29 36 36 29 43 29 1 1 1 1 1 1 8957.4 17799 386 17590 27268 35241 35241 1 TIPSWATLSASQLAR Unmodified 1600.8573 0.85730551 1970 Q5SSJ5;Q5SSJ5-2 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 0 9 0 2 67.294 67.294 2;3 5.37E-16 18568 TMT1-8 132.5 89.379 107.52 107.87 51.334 98.957 96.692 128.36 101 109 58 95 101 123 2 2 2 2 2 2 49433 17800 1970 17591 27269;27270 35242;35243 35242 2 TIPVVFK Unmodified 802.49528 0.49527576 886 P25685-2;P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 0 9 0 1 59.954 59.954 2 0.009161 15674 TMT1-8 125.86 39.745 123 151.45 118.83 102.18 118.22 167.19 116 152 123 102 123 160 1 1 1 1 1 1 16533 17801 886 17592 27271 35244 35244 1 TIPWLEDR Unmodified 1028.5291 0.52909508 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 6 0 1 61.581 61.581 2 1.9E-05 18743 TMT1-5 164.77 90.583 515.17 672.24 671.06 488.61 660.76 634.6 487 675 680 495 674 613 2 2 2 2 2 2 112280 17802 195 17593 27272 35245;35246 35246 2 TIPWLENR Unmodified 1027.5451 0.5450795 672;1022 P12814;P12814-3;P12814-2;P12814-4;P35609-2;P35609 ACTN1;ACTN2 Alpha-actinin-1;Alpha-actinin-2 no no 0 0 0 0 0 5.33 3.09 1 1 1 59.723 59.723 2 5.939E-08 17472 TMT1-7 174.69 86.043 4089 5474.9 5491.3 4183.2 5366.1 5152.4 3867 5491 5570 4219 5483 4977 6 6 6 6 6 6 854900 17803 672;1022 17594 27273;27274;27275 35247;35248;35249;35250;35251;35252;35253 35252 7 TIPWLENRVPENTMHAMQQK Unmodified 2422.1886 0.18856919 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 1 8 0 1 57.553 57.553 4 5.2823E-06 16598 TMT1-7 78.021 62.6 84.724 132.41 75.299 64.852 90.638 137.06 80 131 80 65 94 131 1 1 1 1 1 1 14362 17804 672 17595 27276 35254 35254 1 TIQEADQDGDSAISFTEFVK Unmodified 2200.0172 0.017172792 2481 Q99653 CHP1 Calcineurin B homologous protein 1 yes yes 0 0 0 0 0 4 0 1 72.126 72.126 3 5.4248E-19 22967 TMT1-3 104.06 88.966 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17805 2481 17596 27277 35255 35255 1 TIQEMQQK Unmodified 1004.4961 0.4960804 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 5.5 0.5 1 1 39.995 39.995 2 0.00015205 10181 TMT1-5 122.52 53.601 115.56 175.91 85.588 111.87 115.4 236.56 109 174 94 109 123 225 1 1 1 1 1 1 12351 17806 195 17597 27278;27279 35256;35257 35257 2 TIQFVDWCPTGFK Unmodified 1597.7599 0.75989966 2068;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;Q71U36-2;Q71U36;Q9BQE3;Q9NY65;Q9NY65-2 TUBA3E;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 0 0 6.5 3.2 1 2 1 74.24 74.24 2;3 1.8066E-10 23101 TMT1-7 138.94 117.06 850.48 992.43 850.48 875.77 1009.3 1176.8 802 1000 879 865 1042 1131 5 5 4 5 5 5 335600 17807 622;2068;2510;2783 17598 27280;27281;27282;27283 35258;35259;35260;35261;35262 35259 5 TIQGDEEDLR Unmodified 1174.5466 0.54659564 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 2 0 1 39.219 39.219 2 1.8781E-09 10623 TMT1-1 173.24 139.06 146.25 181.23 153.17 187.21 137.33 197.56 138 182 160 182 146 189 2 2 2 2 2 2 46850 17808 1304 17599 27284 35263;35264 35263 2 TIQNDIMLLQLSR Unmodified 1543.8392 0.83921261 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 7 0 1 71.233 71.233 3 3.1353E-05 21935 TMT1-6 101.3 75.261 30.769 35.759 28.124 21.404 51.351 29.449 29 36 29 22 51 29 1 1 1 1 1 1 10903 17809 564 17600 27285 35265 35265 1 TIQQCCENILLNAAWLK Unmodified 2074.034 0.033966025 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 8 0 1 77.514 77.514 3 1.143E-24 24419 TMT1-7 124.43 98.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17810 1324 17601 27286 35266 35266 1 TIQVDNTDAEGR Unmodified 1317.6161 0.61607219 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 2 0 1 37.918 37.918 2 3.1922E-09 10141 TMT1-1 152.96 80.669 46.336 80.676 78.924 57.515 62.48 83.497 44 80 80 58 65 80 1 1 1 1 1 1 15508 17811 932 17602 27287 35267 35267 1 TIRDLEVVEGSAAR Unmodified 1514.8053 0.80526994 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5;Q15746-10;Q15746-8 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 1 4 0 1 48.761 48.761 3 3.7353E-07 13770 TMT1-3 107.75 68.956 91.814 184.69 101.78 103.62 95.912 175.29 87 181 109 102 102 167 1 1 1 1 1 1 20211 17812 1870 17603 27288 35268 35268 1 TISETIER Unmodified 947.49238 0.49237523 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3 0 1 38.392 38.392 2 0.006311 10715 TMT1-2 106.93 56.028 91.944 107.34 145.49 100.82 106.05 97.178 87 109 145 102 109 94 1 1 1 1 1 1 11137 17813 902 17604 27289 35269 35269 1 TISFDIPPQEILTK Unmodified 1600.8712 0.87122424 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 6.5 0.5 3 3 73.9 73.9 2;3;4 9.9099E-18 22928 TMT1-6 153.32 118.94 1193 1560.1 1407.5 1289 1330.5 1657 1127 1564 1446 1279 1383 1590 14 14 14 14 14 14 124160 17814 906 17605 27290;27291;27292;27293;27294;27295 35270;35271;35272;35273;35274;35275;35276;35277;35278;35279;35280;35281;35282;35283;35284 35276 15 TISFIPPDGEFELMSYR Unmodified 2000.9554 0.95536458 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 0 6 0 1 80.096 80.096 3 0.00031006 26003 TMT1-5 71.143 41.41 30.674 66.792 17.93 38.421 50.569 29.471 29 65 22 37 51 29 1 1 1 1 1 1 7415.6 17815 2569 17606 27296 35285 35285 1 TISHVIIGLK Unmodified 1079.6703 0.67028001 2955 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 0 9 0 1 52.35 52.35 3 0.00067824 12713 TMT1-8 93.111 68.256 184.59 181.02 201.93 303.05 216.31 270.99 174 185 210 292 229 260 1 1 1 1 1 1 24336 17816 2955 17607 27297 35286 35286 1 TISPMVMDAK Unmodified 1091.5355 0.53550237 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 7.5 0.5 1 1 54.755 54.755 2;3 1.6249E-06 15351 TMT1-6 161.63 98.155 439.32 732.16 384.29 393.2 424.31 824.7 415 722 414 388 450 785 2 2 2 2 2 2 52184 17817 776 17608 27298;27299 35287;35288;35289 35287 3 TISQAVNKK Unmodified 987.57129 0.57129425 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 1 9 0 1 37.122 37.122 3 0.0075459 7110 TMT1-8 91.584 48.985 108.05 98.712 151.34 76.573 98.219 144.31 102 102 149 80 102 138 1 1 1 1 1 1 6997.8 17818 2963 17609 27300 35290 35290 1 TISQEFLTPGK Unmodified 1219.6449 0.64485312 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 0 7 0 1 57.194 57.194 3 1.5131E-06 16347 TMT1-6 126.71 96.57 153.89 204.82 111.28 196.11 203.6 205.26 145 204 123 189 210 198 1 1 1 1 1 1 26883 17819 1635 17610 27301 35291 35291 1 TISQEFLTPGKLEINFEELLK Unmodified 2448.3152 0.31519271 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 1 8 0 1 86.041 86.041 4 0.003073 27584 TMT1-7 49.326 36.893 30.818 35.895 19.818 37.648 27.57 30.127 29 36 22 36 29 29 1 1 1 1 1 1 8371.9 17820 1635 17611 27302 35292 35292 1 TISQTSAPVWDESASFLIR Unmodified 2107.0586 0.058584097 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 6.5 0.5 1 1 73.246 73.246 3 1.9275E-35 22677 TMT1-6 157.22 133.8 84.739 108.71 92.993 63.91 84.671 98.854 80 109 95 65 87 95 2 2 2 2 2 2 46511 17821 2525 17612 27303;27304 35293;35294 35294 2 TISSSLAVVDLIDAIQPGCINYDLVK Unmodified 2803.4677 0.46774696 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 7 0 1 96.336 96.336 4 1.0386E-05 31335 TMT1-6 62.193 49.264 30.797 20.725 36.249 29.282 13.553 23.065 29 22 36 29 15 22 1 1 1 1 1 1 4646.5 17822 691 17613 27305 35295 35295 1 TISTSDPAEVLVK Unmodified 1358.7293 0.72931103 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 5 0 1 58.96 58.96 3 0.0049364 17504 TMT1-4 45.115 20.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17823 2107 17614 27306 35296 35296 1 TISTTISPLLLIP Unmodified 1367.8276 0.82756851 807 P20292 ALOX5AP Arachidonate 5-lipoxygenase-activating protein yes yes 0 0 0 0 0 9 0 1 96.194 96.194 2 1.3547E-12 29711 TMT1-8 140.5 124.61 23.419 52.375 18.541 44.949 50.253 60.394 22 51 22 43 52 58 1 2 2 2 2 2 36725 17824 807 17615 27307 35297;35298 35298 2 TITDVINIGIGGSDLGPLMVTEALKPYSSGGPR Unmodified 3327.7384 0.73844252 516 P06744 GPI Glucose-6-phosphate isomerase yes yes 0 0 0 0 1 9 0 2 90.166 90.166 4;5 1.8745E-23 27486 TMT1-8 95.302 80.324 69.821 117.58 67.874 83.177 69.677 83.292 66 116 73 81 73 80 3 3 3 3 3 3 20625 17825 516 17616 27308;27309 35299;35300;35301 35301 3 TITELGEK Unmodified 889.47566 0.47566253 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 5 0 1 47.215 47.215 2 0.019002 12876 TMT1-4 89.698 41.524 332.38 444.61 386.07 96.742 490.29 548.86 314 445 387 118 491 528 1 1 1 1 1 1 52625 17826 1046 17617 27310 35302 35302 1 TITEYAR Unmodified 852.43413 0.43413207 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 3.5 0.5 1 1 36.866 36.866 2 6.3512E-08 9018 TMT1-3 173.38 91.743 368.13 408.6 359.65 345.61 243.22 374.69 347 413 371 340 260 358 2 2 2 2 2 2 50136 17827 648 17618 27311;27312 35303;35304 35304 2 TITLEVEPSDTIENVK Unmodified 1786.92 0.92002493 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 0 2.5 1.5 1 1 64.737 64.737 3 3.9986E-36 20022 TMT1-3 200.9 173.87 660.14 976.2 934.5 852.97 734.88 1004.5 625 974 956 844 773 962 4 4 4 4 4 4 148090 17828 1463 17619 27313;27314 35305;35306;35307;35308 35307 4 TITLEVEPSDTIENVKAK Unmodified 1986.0521 0.052101735 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 1 5.67 0.471 1 2 60.361 60.361 3;4 3.7802E-24 18189 TMT1-5 120.24 98.772 184.31 239.61 198.7 126.66 190.85 242.93 174 240 203 130 196 233 2 2 2 2 2 2 25554 17829 1463 17620 27315;27316;27317 35309;35310;35311 35311 3 TITLQPGSPCNDFR Unmodified 1604.7617 0.76169057 101 O14672;O14672-2 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes no 0 0 0 0 0 6 0 1 53.325 53.325 2 6.561E-22 15458 TMT1-5 175.54 169.69 37.862 65.381 73.35 34.184 42.115 68.088 36 65 73 36 44 65 1 1 1 1 1 1 11472 17830 101 17621 27318 35312 35312 1 TITMLDEQK Unmodified 1077.5376 0.53761086 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 5 0 1 52.14 52.14 2 7.4384E-26 14849 TMT1-4 177.36 112.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17831 45 17622 27319 35313 35313 1 TITMLDEQKEQLNR Unmodified 1717.8669 0.86688392 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 1 5.5 0.5 1 1 50.687 50.687 3 4.2389E-17 14390 TMT1-5 151.08 140.7 184.41 189.15 225.52 126.89 151.69 286.69 174 193 225 131 160 273 1 1 1 1 1 1 24766 17832 45 17623 27320;27321 35314;35315 35315 2 TITSSYYR Unmodified 989.48181 0.48181054 1444;2616 P62820;Q9H0U4 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 0 0 5.25 2.86 1 1 1 1 38.622 38.622 2 1.5386E-26 9414 TMT1-4 208.59 145.3 571.27 713.53 584.34 503.21 624.21 704.94 539 716 603 503 642 678 3 3 3 3 3 3 128200 17833 1444;2616 17624 27322;27323;27324;27325 35316;35317;35318;35319 35317 4 TITTAYYR Unmodified 987.50255 0.50254598 1366;2333;365;808 P61006;P61006-2;Q92930;O95716;P20336 RAB8A;RAB8B;RAB3D;RAB3A Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-3D;Ras-related protein Rab-3A no no 0 0 0 0 0 6 0.816 1 1 1 41.436 41.436 2 0.014746 10643 TMT1-5 93.561 55.268 306.61 425.8 405.87 263.51 336.07 491.43 290 426 411 269 349 470 3 3 3 3 3 3 71021 17834 1366;2333;365;808 17625 27326;27327;27328 35320;35321;35322 35321 3 TITVALADGGRPDNTGR Unmodified 1712.8806 0.88056015 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 1 6 0 1 44.357 44.357 3 0.0031757 11894 TMT1-5 59.728 40.123 77.678 62.987 55.963 58.874 62.968 67.493 73 65 58 58 65 65 1 1 1 1 1 1 11731 17835 1184 17626 27329 35323 35323 1 TITVTPNR Unmodified 900.50288 0.50288033 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 36.196 36.196 2 0.0035185 8665 TMT1-5 131.06 73.781 226.62 191.63 161.2 153.82 144.05 229.34 213 197 167 152 152 219 1 1 1 1 1 1 25338 17836 856 17627 27330 35324 35324 1 TIVAINKDPEAPIFQVADYGIVADLFK Unmodified 2946.5743 0.57426095 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 1 8 0 1 91.281 91.281 4 3.1596E-11 29460 TMT1-7 81.315 79.151 15.787 36.897 20.511 22.44 20.39 46.322 15 36 22 22 22 44 1 1 1 1 1 1 19587 17837 693 17628 27331 35325 35325 1 TIVEFECR Unmodified 1052.4961 0.4960804 2768 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 0 0 4 0 1 49.06 49.06 2 0.0018966 13907 TMT1-3 83.265 49.187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17838 2768 17629 27332 35326 35326 1 TIVITSHPGQIVK Unmodified 1391.8136 0.81364979 976 P31689-2;P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 0 8.5 0.5 1 1 47.203 47.203 3 9.8503E-10 10728 TMT1-8 117.86 91.211 161.7 208.56 237.96 188.29 218.42 241.08 153 210 240 189 225 232 2 2 2 2 2 2 32458 17839 976 17630 27333;27334 35327;35328 35328 2 TIVMGASFR Unmodified 980.51134 0.51133653 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 9 0 1 50.931 50.931 2 0.0072085 12203 TMT1-8 96.668 69.414 153.22 150.07 270.11 153.54 278.93 200.98 145 155 265 160 280 196 1 1 1 1 1 1 39209 17840 1053 17631 27335 35329 35329 1 TIVQSGGIK Unmodified 901.52328 0.52328142 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 7.5 0.5 1 1 43.146 43.146 2 0.00064515 10855 TMT1-7 132.01 52.894 169.63 186.54 186.34 137.12 138.88 188.98 160 189 189 138 145 181 2 2 2 2 2 2 14416 17841 1264 17632 27336;27337 35330;35331 35331 2 TIVSIGDPK Unmodified 928.52295 0.52294707 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 6 0 1 51.018 51.018 2 0.0015287 14545 TMT1-5 118.18 68.364 160.19 299.15 235.1 155.09 307.39 314.23 152 295 241 160 311 303 1 1 1 1 1 1 26795 17842 1680 17633 27338 35332 35332 1 TIVTTLQDSIR Unmodified 1245.6929 0.69286595 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 6.43 2.38 1 1 3 1 1 59.687 59.687 2;3 3.4677E-67 17296 TMT1-6 245.27 176.89 6126.9 8397.9 6937 6010.5 8754.5 8332.6 5788 8390 7153 6028 8907 8051 9 9 9 9 9 9 2200900 + 17843 32;554 17634 27339;27340;27341;27342;27343;27344;27345 35333;35334;35335;35336;35337;35338;35339;35340;35341;35342 35337 10 TIVTTLQDSIRK Unmodified 1373.7878 0.78782897 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 9 0 1 55.8 55.8 3 0.00066752 14060 TMT1-8 92.151 63.92 153.2 238.52 198.5 184.6 132.67 306.42 145 237 205 182 145 291 1 1 1 1 1 1 13023 + 17844 32;554 17635 27346 35343 35343 1 TKDEIITTTVPEDIMSNR Unmodified 2062.0252 0.025235058 378 O95870-2;O95870 ABHD16A Abhydrolase domain-containing protein 16A yes no 0 0 0 0 1 5 0 1 58.814 58.814 3 0.0050128 17471 TMT1-4 53.033 45.335 30.421 89.834 40.815 28.049 64.642 59.983 29 87 44 29 65 58 1 1 1 1 1 1 10029 17845 378 17636 27347 35344 35344 1 TKDELTPLHCAAR Unmodified 1510.7562 0.75621126 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 1 6 0 1 36.512 36.512 4 0.025548 8814 TMT1-5 50.088 23.118 53.634 87.126 109.23 72.132 61.002 106.99 51 87 109 73 65 102 1 1 1 1 1 1 5569.5 17846 736 17637 27348 35345 35345 1 TKDEPQR Unmodified 872.43519 0.4351947 835 P21926 CD9 CD9 antigen yes yes 0 0 0 0 1 3 1 1 1 22.244 22.244 3 0.0088834 3740 TMT1-3 93.267 54.848 701.89 325.68 600 416.42 656.56 305.33 659 360 593 425 656 304 3 3 3 3 3 3 40703 17847 835 17638 27349;27350 35346;35347;35348 35347 3 TKDGVVEITGK Unmodified 1145.6292 0.62920306 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 1 6 0 2 44.809 44.809 3 0.0006636 12019 TMT1-5 95.651 77.734 1189.9 1319.6 1231.4 1219.5 876.32 1756.3 1122 1335 1267 1198 949 1671 3 3 3 3 3 3 202790 17848 476 17639 27351;27352 35349;35350;35351 35350 3 TKDIEDVFYK Unmodified 1256.6289 0.62886871 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 1 6 0 1 56.573 56.573 3 6.8877E-05 16743 TMT1-5 97.911 71.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17849 1615 17640 27353 35352 35352 1 TKDIVNGLR Unmodified 1014.5822 0.58219329 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 7.5 0.5 1 1 41.572 41.572 3 0.031251 10274 TMT1-6 59.645 17.645 361.74 518.37 438.26 304.23 392.82 581.49 342 517 448 309 408 556 2 2 2 2 2 2 23469 17850 1144;1145 17641 27354;27355 35353;35354 35353 2 TKDLQAICGISCDELSSMVLELR Unmodified 2637.2812 0.28120852 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 6.5 0.5 1 1 78.288 78.288 4 2.6085E-18 24684 TMT1-6 115.36 103.51 284.15 477.19 350.51 298.11 356.98 475.91 269 472 364 298 370 456 5 5 5 5 5 5 126280 + 17851 32;554 17642 27356;27357 35355;35356;35357;35358;35359 35358 5 TKDSGLFCVPLTALLEQDQR Unmodified 2290.1627 0.16273159 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 1 8 0 1 75.366 75.366 4 0.0075493 23630 TMT1-7 45.395 29.63 30.727 35.641 35.363 29.079 27.158 53.591 29 36 36 29 29 51 1 1 1 1 1 1 6748.4 17852 2172 17643 27358 35360 35360 1 TKEGVLYVGSK Unmodified 1179.6499 0.6499385 1054 P37840-2;P37840;Q16143 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 0 0 0 0 1 7.5 0.5 1 1 45.169 45.169 3 0.0041868 11632 TMT1-6 77.146 10.857 707.92 1138.8 882.08 590.69 724.64 1044.3 670 1129 906 601 753 999 4 4 4 4 4 4 108990 17853 1054 17644 27359;27360 35361;35362;35363;35364 35361 4 TKEGVVHGVATVAEK Unmodified 1523.8308 0.83075641 1054 P37840-2;P37840 SNCA Alpha-synuclein yes no 0 0 0 0 1 6.5 0.5 2 2 42.455 42.455 3;4 1.0906E-05 10623 TMT1-6 98.165 62.506 647.08 895.27 673.02 566.51 580.98 904.45 611 893 698 565 610 864 4 4 4 4 4 4 163870 17854 1054 17645 27361;27362;27363;27364 35365;35366;35367;35368 35368 4 TKENDAHLVEVNLNNIK Unmodified 1950.0171 0.017053633 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 6 0 1 51.08 51.08 4 2.1208E-08 14543 TMT1-5 103.63 87.512 307.86 440.26 363.5 272.07 363.53 320.09 291 439 373 275 370 310 2 2 2 2 2 2 61263 17855 2788 17646 27365 35369;35370 35369 2 TKENILEEFSK Unmodified 1336.6874 0.68744622 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 1 6 0 1 58.059 58.059 3 0.00077336 17371 TMT1-5 93.958 50.576 169.73 228.9 134.32 179.05 166.22 280.94 160 228 145 174 176 268 1 1 1 1 1 1 42356 17856 170 17647 27366 35371 35371 1 TKEQILEEFSK Unmodified 1350.7031 0.70309628 226;227 O60506-2;O60506;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 6 0 1 59.16 59.16 3 0.0027847 17734 TMT1-5 80.967 51.991 129.52 235.6 214.08 181.67 181.09 270.93 123 233 219 181 190 259 1 1 1 1 1 1 21176 17857 226;227 17648 27367 35372 35372 1 TKEQVTNVGGAVVTGVTAVAQK Unmodified 2156.1801 0.18009622 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 1 8.25 0.829 1 1 2 60.64 60.64 3;4 1.3343E-45 17610 TMT1-7 154.79 143.48 1238.8 1644.3 1216.7 1203.2 1267.4 1811.2 1169 1643 1271 1189 1324 1733 6 6 6 6 6 6 178990 17858 1054 17649 27368;27369;27370;27371 35373;35374;35375;35376;35377;35378 35374 6 TKEVIQEWNLTNIK Unmodified 1714.9254 0.92538508 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7.67 0.471 1 2 61.724 61.724 3;4 9.5111E-17 18160 TMT1-7 146.27 105.18 1524.6 2413.1 2129.1 1441.6 1976.3 2019.1 1444 2398 2168 1469 2019 1947 4 4 4 4 4 4 758930 17859 3010 17650 27372;27373;27374 35379;35380;35381;35382 35380 4 TKEVIQEWNLTNIKR Unmodified 1871.0265 0.026496107 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 2 9 0 2 55.334 55.334 3;4 5.2042E-05 13806 TMT1-8 84.071 62.838 234.97 449.76 343.7 250.46 238.95 534.71 223 443 354 252 257 508 1 1 1 1 1 1 75991 17860 3010 17651 27375;27376 35383;35384 35383 2 TKFENLCK Unmodified 1038.5168 0.51681584 545 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 1 8 0 1 43.138 43.138 3 0.015491 10852 TMT1-7 76.1 50.714 685.37 1051.6 778.2 540.88 854.93 819.88 648 1044 803 552 868 792 1 1 1 1 1 1 53659 17861 545 17652 27377 35385 35385 1 TKGDPLGTEGGLDASNTER Unmodified 1916.9076 0.90756276 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 1 4 0 1 43.369 43.369 3 1.0006E-09 11654 TMT1-3 99.881 95.613 129.92 229.16 151.88 153.42 194.69 156.48 123 226 160 152 198 152 1 1 1 1 1 1 33461 17862 1658 17653 27378 35386 35386 1 TKGFSLESCR Unmodified 1183.5656 0.56555694 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 1 8 0 1 39.874 39.874 3 0.015561 9627 TMT1-7 65.408 58.191 176.54 298.76 192.64 183.87 131.89 329.89 167 295 203 181 145 313 1 1 1 1 1 1 29600 17863 536 17654 27379 35387 35387 1 TKGLQSGVDIGVK Unmodified 1300.7351 0.73506511 2463 Q99439 CNN2 Calponin-2 yes yes 0 0 0 0 1 8 0 1 46.946 46.946 3 1.4863E-05 12386 TMT1-7 104.41 59.158 359.18 508.54 336.52 294.09 150.02 659.84 339 506 353 290 178 623 1 1 1 1 1 1 31158 17864 2463 17655 27380 35388 35388 1 TKIDWNK Unmodified 903.48142 0.48141661 1277;1143 P52907;P47755 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 1 8 0 1 43.333 43.333 3 0.024743 11003 TMT1-7 75.378 28.812 1685.5 1858 1521.9 1129.9 1175.9 2260.5 1588 1877 1564 1137 1248 2152 1 1 1 1 1 1 127560 17865 1277;1143 17656 27381 35389 35389 1 TKLEEHLEGIVNIFHQYSVR Unmodified 2411.2597 0.25974352 1512 P80511 S100A12 Protein S100-A12;Calcitermin yes yes 0 0 0 0 1 9 0 1 68.207 68.207 4 1.4623E-08 18926 TMT1-8 80.67 60.281 77.308 93.257 92.484 72.702 83.754 113.8 73 94 94 73 87 109 1 1 1 1 1 1 17381 17866 1512 17657 27382 35390 35390 1 TKPSDEEMLFIYGHYK Unmodified 1956.9291 0.92914983 526 P07108;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 DBI Acyl-CoA-binding protein yes no 0 0 0 0 1 6.5 0.5 1 1 57.106 57.106 4 6.9551E-06 16330 TMT1-6 90.348 74.756 743.2 1029 816.43 751.03 892.36 1002.2 702 1027 846 747 919 964 3 3 3 3 3 3 79551 17867 526 17658 27383;27384 35391;35392;35393 35392 3 TKPTQNSVR Unmodified 1029.5567 0.55670682 763;2726 P17812;Q9NRF8 CTPS1;CTPS2 CTP synthase 1;CTP synthase 2 no no 0 0 0 0 1 8 0 1 25.023 25.023 3 0.032681 4209 TMT1-7 58.955 29.482 30.689 44.17 34.519 36.555 39.137 29.797 29 44 36 36 40 29 1 1 1 1 1 1 3280.3 17868 763;2726 17659 27385 35394 35394 1 TKPYIQVDIGGGQTK Unmodified 1603.857 0.85697116 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 8 0 2 50.749 50.749 2;3 2.6207E-17 13844 TMT1-7 150.28 120.17 770.96 962.98 896.25 720.86 907.01 1042.3 728 968 915 724 933 1002 3 3 3 3 3 3 228130 17869 640 17660 27386;27387 35395;35396;35397 35395 3 TKQGVAEAAGK Unmodified 1058.572 0.57202253 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 1 7 0 1 34.829 34.829 3 0.031906 7529 TMT1-6 53.995 27.481 228.21 295.69 167.61 209.68 175.64 361.69 215 295 181 204 189 344 1 1 1 1 1 1 12239 17870 1054 17661 27388 35398 35398 1 TKSTGGAPTFNVTVTK Unmodified 1607.8519 0.85188578 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 1 9 0 2 47.534 47.534 3 3.8966E-07 10935 TMT1-8 89.344 35.377 77.271 101.79 91.624 80.529 77.128 83.079 73 102 94 80 80 80 1 1 1 1 1 1 14813 17871 540 17662 27389;27390 35399;35400 35400 2 TKTDVLILPEEVEWIK Unmodified 1912.0557 0.05573055 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 1 6 0 1 73.922 73.922 4 0.00082384 23578 TMT1-5 67.605 52.013 38.125 51.002 41.347 67.542 55.24 67.714 36 51 44 65 58 65 1 1 1 1 1 1 6159.8 17872 2791 17663 27391 35401 35401 1 TKTPGPGAQSALR Unmodified 1282.6993 0.69934831 1423 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 1 8 0 1 32.112 32.112 3 0.00046674 6571 TMT1-7 85.976 66.705 138.54 259.99 119.15 141.25 131.98 171.06 131 255 131 138 138 164 1 1 1 1 1 1 22718 17873 1423 17664 27392 35402 35402 1 TKVEAFQTTISK Unmodified 1351.7347 0.73473076 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 1 8.5 0.5 1 1 48.869 48.869 3 5.5101E-08 13141 TMT1-7 127.71 81.925 571.96 1068 889.75 699.39 848.34 860.57 543 1054 913 703 870 830 2 2 2 2 2 2 105150 17874 2907 17665 27393;27394 35403;35404 35403 2 TKYWELIYEDSMDLIAK Unmodified 2117.0391 0.039094208 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 1 7 0 1 85.432 85.432 4 0.013162 27416 TMT1-6 48.677 30.883 38.039 58.32 49.496 44.788 18.85 61.29 36 58 51 44 22 58 1 1 1 1 1 1 5701.1 17875 271 17666 27395 35405 35405 1 TLAAEMQELR Unmodified 1160.586 0.58595803 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 4 0 1 53.892 53.892 2 0.0023718 15782 TMT1-3 99.568 58.539 46.339 88.24 71.987 33.03 107.81 136.57 44 87 73 36 109 131 1 1 1 1 1 1 10963 17876 2162 17667 27396 35406 35406 1 TLAALPDQDSFYDVTDALEQQGMEALVQR Unmodified 3223.5343 0.53432298 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 93.712 93.712 3 5.9079E-07 31055 TMT1-4 52.402 50.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17877 3042 17668 27397 35407 35407 1 TLADAEGDVFR Unmodified 1192.5724 0.57241646 1567 Q02252-2;Q02252 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes no 0 0 0 0 0 3 0 1 55.676 55.676 2 0.0021511 17482 TMT1-2 94.363 60.985 53.925 72.825 72.447 42.606 62.103 114.42 51 73 73 44 65 109 1 1 1 1 1 1 11181 17878 1567 17669 27398 35408 35408 1 TLADVLVQEVIK Unmodified 1326.7759 0.7758673 1181 P49441 INPP1 Inositol polyphosphate 1-phosphatase yes yes 0 0 0 0 0 6 0 1 82.394 82.394 2 0.0023449 26879 TMT1-5 65.179 24.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17879 1181 17670 27399 35409 35409 1 TLAEAGAK Unmodified 759.41267 0.41266834 2686 Q9HC16 APOBEC3G DNA dC->dU-editing enzyme APOBEC-3G yes yes 0 0 0 0 0 5 0 1 37.114 37.114 2 0.016047 8922 TMT1-4 91.853 34.294 61.297 94.59 77.323 73.024 114.65 96.932 58 94 80 73 116 94 1 1 1 1 1 1 7099.1 17880 2686 17671 27400 35410 35410 1 TLAEQLEVGIAK Unmodified 1270.7133 0.71326704 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 5.5 0.5 1 1 63.866 63.866 3 7.3507E-06 19649 TMT1-5 111.94 81.108 222.55 258.54 248.47 242.46 268.52 263.1 210 261 255 240 276 254 3 3 3 3 3 3 37472 17881 2066 17672 27401;27402 35411;35412;35413 35413 3 TLAESALQLLYTAK Unmodified 1520.845 0.84500949 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7 3.03 1 2 2 82.602 82.602 2;3 3.812E-37 24984 TMT1-8 208.84 172.42 2520.5 2914.7 3112.8 2229 2611.6 3301.5 2380 2948 3142 2254 2703 3167 9 9 9 9 9 9 1418700 17882 3010 17673 27403;27404;27405;27406;27407 35414;35415;35416;35417;35418;35419;35420;35421;35422 35422 9 TLAFLIPAVELIVK Unmodified 1525.9484 0.94835235 2764 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 0 9 0 1 99.242 99.242 3 0.00027269 30736 TMT1-8 69.716 37.654 15.828 29.456 19.884 46.534 19.832 30.348 15 29 22 44 22 29 1 1 1 1 1 1 2076.6 17883 2764 17674 27408 35423 35423 1 TLAFTSVDLTNK Unmodified 1308.6925 0.6925316 2704 Q9NPJ3-2;Q9NPJ3 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes no 0 0 0 0 0 8 0 2 64.26 64.26 2;3 0.00014496 19185 TMT1-7 95.498 67.171 131.04 228.13 145.34 107.11 178.71 196.37 124 225 152 109 182 189 2 2 2 2 2 2 36171 17884 2704 17675 27409;27410 35424;35425 35424 2 TLAGDVHIVR Unmodified 1079.6087 0.60874239 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 5.5 0.5 1 1 40.504 40.504 3 0.0017323 10307 TMT1-4 85.821 51.128 362.77 422.1 528.09 384.54 545.11 486.53 343 428 529 390 554 471 3 3 3 3 3 3 40482 17885 2841 17676 27411;27412 35426;35427;35428 35427 3 TLAGIPR Unmodified 726.43882 0.43882351 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 5.33 3.09 1 1 1 42.261 42.261 2 0.0079623 10217 TMT1-7 76.833 55.131 459.28 556.91 603.51 417.95 621.93 824.39 434 562 608 426 640 790 2 2 2 2 2 2 89585 17886 1684 17677 27413;27414;27415 35429;35430;35431 35431 3 TLAHFRPIEDNEK Unmodified 1568.7947 0.79470526 2481 Q99653 CHP1 Calcineurin B homologous protein 1 yes yes 0 0 0 0 1 6 0 1 40.938 40.938 4 0.0045119 10531 TMT1-5 64.798 32.544 114.99 199.15 162.02 138.07 165.03 157.32 109 197 167 138 169 152 1 1 1 1 1 1 8924.7 17887 2481 17678 27416 35432 35432 1 TLAIELAPR Unmodified 982.58113 0.58113065 2538 Q9BTZ2;Q9BTZ2-8;Q9BTZ2-4;P0CG22 DHRS4;DHRS4L1 Dehydrogenase/reductase SDR family member 4;Putative dehydrogenase/reductase SDR family member 4-like 1 yes no 0 0 0 0 0 6 0 1 55.319 55.319 2 0.031098 16223 TMT1-5 73.573 36.381 99.502 138.26 111.47 117.77 126.43 150.96 94 138 116 116 131 145 1 1 1 1 1 1 10122 17888 2538 17679 27417 35433 35433 1 TLAQLNPESSLFIIASK Unmodified 1831.0091 0.0091147084 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 8.5 0.5 1 1 80.09 80.09 3 7.5671E-14 25424 TMT1-7 121.74 102.42 361.09 487.23 394.13 341.07 491.84 481.66 341 487 407 342 501 465 4 4 4 4 4 4 124280 17889 516 17680 27418;27419 35434;35435;35436;35437 35434 4 TLASAGGPDNLVLLNPEK Unmodified 1807.968 0.96797818 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 0 6 0 1 66.765 66.765 2 3.6365E-08 20762 TMT1-5 81.619 63.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17890 1023 17681 27420 35438 35438 1 TLASENIPSLPPGGELASK Unmodified 1879.9891 0.98910755 1031 P35813-3;P35813 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 6 0 1 62.656 62.656 3 0.00025102 19352 TMT1-5 63.184 34.208 84.665 116.06 99.058 87.906 68.14 121.71 80 116 102 87 73 116 2 2 2 2 2 2 8771.6 17891 1031 17682 27421 35439;35440 35440 2 TLASPEQLEK Unmodified 1114.587 0.58700389 2474 Q99576-4;Q99576;Q99576-3 TSC22D3 TSC22 domain family protein 3 yes no 0 0 0 0 0 5 0 1 48.727 48.727 2 0.0029452 13527 TMT1-4 97.734 58.429 68.811 102.72 69.909 57.634 84.703 106.31 65 102 73 58 87 102 1 1 1 1 1 1 9065.6 17892 2474 17683 27422 35441 35441 1 TLATDILMGVLK Unmodified 1273.7316 0.73155964 153 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 0 9 0 1 85.418 85.418 2 5.9614E-11 25626 TMT1-8 150.1 99.037 30.652 51.622 34.422 28.696 50.466 45.464 29 51 36 29 51 44 1 1 1 1 1 1 6088.9 17893 153 17684 27423 35442 35442 1 TLATWATK Unmodified 890.48617 0.48616764 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 9 0 1 52.762 52.762 2 0.0073173 12831 TMT1-8 112.84 65.644 130.63 136.15 112.12 102.44 125.52 197.89 123 138 116 102 131 189 1 1 1 1 1 1 45618 17894 1803 17685 27424 35443 35443 1 TLAVITK Unmodified 744.47454 0.47454032 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 8.5 0.5 1 1 50.445 50.445 2 0.010348 13759 TMT1-7 108.46 18.911 822.25 1138.2 963 729.43 646.57 1243.7 777 1137 987 731 691 1184 2 2 2 2 2 2 99689 17895 68 17686 27425;27426 35444;35445 35444 2 TLAYIITELDER Unmodified 1435.7559 0.75586013 3030 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 0 0 5 0 1 78.723 78.723 3 0.033467 25276 TMT1-4 47.189 32.509 0 23.165 14.556 6.3764 21.642 31.362 0 22 15 7 22 30 0 1 1 1 1 1 2594.7 17896 3030 17687 27427 35446 35446 1 TLAYLLPAIVHINHQPYLER Unmodified 2360.3005 0.30048612 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 9 0 1 69.593 69.593 4 0.00024164 19542 TMT1-8 57.009 34.788 84.855 85.286 93.336 63.455 107.76 97.129 80 87 94 65 109 94 1 1 1 1 1 1 13659 17897 2321 17688 27428 35447 35447 1 TLCECAGGLECACPALLEYAR Unmodified 2413.0535 0.053457193 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 68.211 68.211 3 1.478E-11 21135 TMT1-4 103.87 87.695 70.269 48.673 51.014 20.059 50.351 60.391 66 51 51 22 51 58 1 1 1 1 1 1 32037 17898 471 17689 27429 35448 35448 1 TLDDSANRR Unmodified 1046.5105 0.51048491 964 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 0 1 3 0 1 22.569 22.569 3 0.032045 4407 TMT1-2 57.59 46.057 15.637 60.223 26.019 37.416 20.251 30.336 15 58 29 36 22 29 1 1 1 1 1 1 1609 17899 964 17690 27430 35449 35449 1 TLDGGLNVIQLETAVGAAIK Unmodified 1982.1048 0.10480601 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 7 0 1 85.557 85.557 3 6.8881E-05 27428 TMT1-6 65.887 49.203 130.7 120.16 113.46 118.21 96.304 144.36 123 123 117 116 102 138 2 2 2 2 2 2 37368 17900 1910 17691 27431 35450;35451 35450 2 TLDINVK Unmodified 801.45962 0.45961853 2538 Q9BTZ2;Q6PKH6;Q6PKH6-2 DHRS4;DHRS4L2 Dehydrogenase/reductase SDR family member 4;Dehydrogenase/reductase SDR family member 4-like 2 yes no 0 0 0 0 0 6 0 1 51.13 51.13 2 0.038681 14671 TMT1-5 86.794 24.077 175.97 310.12 278.76 154.32 209.55 240.27 167 307 282 160 215 231 1 1 1 1 1 1 24367 17901 2538 17692 27432 35452 35452 1 TLDLSNNQLSEIPAELADCPK Unmodified 2327.1315 0.13149104 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 5 0 1 74.487 74.487 3 1.0466E-05 23634 TMT1-4 72.145 54.864 30.771 35.765 27.762 29.522 27.687 37.586 29 36 29 29 29 36 1 1 1 1 1 1 7113.6 17902 2166 17693 27433 35453 35453 1 TLDNLGYR Unmodified 950.48214 0.48214489 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 5 0 1 44.895 44.895 2 0.0063034 11988 TMT1-4 72.038 67.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17903 2854 17694 27434 35454 35454 1 TLDPDPAIR Unmodified 996.52401 0.52400971 1310 P55060-3;P55060;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 0 3 0 1 44.602 44.602 2 0.0079237 13107 TMT1-2 91.783 75.235 91.997 153.9 97.113 79.772 99.94 89.89 87 152 102 80 102 87 1 1 1 1 1 1 13231 17904 1310 17695 27435 35455 35455 1 TLDSWRDEFLIQASPR Unmodified 1932.9694 0.96937516 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 1 7 0 1 65.897 65.897 3 3.0603E-16 19812 TMT1-6 139.88 130.35 350.95 575.03 401.83 415.29 472.78 510.98 332 569 422 410 487 492 1 1 1 1 1 1 125110 17905 1237 17696 27436 35456 35456 1 TLDTDLDGVVTFDLFK Unmodified 1797.9036 0.90364658 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 6 0 1 88.363 88.363 2 6.8557E-06 29180 TMT1-5 79.492 57.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17906 536 17697 27437 35457 35457 1 TLDTIQLAFK Unmodified 1148.6441 0.64412484 2222 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 0 8 0 1 68.826 68.826 2 0.010289 21018 TMT1-7 83.862 54.514 84.815 124.03 67.117 89.776 69.923 67.295 80 123 73 87 73 65 1 1 1 1 1 1 7462.7 17907 2222 17698 27438 35458 35458 1 TLDVAVK Unmodified 744.43815 0.43815481 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 6 0 1 47.796 47.796 2 0.013441 13240 TMT1-5 102.72 30.486 365.74 577.68 438.24 442.91 515.98 586.5 346 573 457 438 532 564 1 1 1 1 1 1 61203 17908 3 17699 27439 35459 35459 1 TLDVFNIILAR Unmodified 1273.7394 0.73942221 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 9 0 1 83.164 83.164 2 0.012064 24811 TMT1-8 66.056 31.803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17909 2064 17700 27440 35460 35460 1 TLEDILADAPESQNNCR Unmodified 1944.8847 0.88471883 2124 Q86WV6 TMEM173 Stimulator of interferon genes protein yes yes 0 0 0 0 0 3 0 1 65.351 65.351 3 2.5664E-10 21297 TMT1-2 86.488 67.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17910 2124 17701 27441 35461 35461 1 TLEDPDLNVR Unmodified 1170.5881 0.58806652 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 48.827 48.827 2 5.1091E-05 14493 TMT1-1 146.27 93.408 161.24 163.94 172.25 144.88 177.28 156.97 152 167 175 145 181 152 2 2 2 2 2 2 35837 17911 2116 17702 27442;27443 35462;35463 35462 2 TLEEAIR Unmodified 830.44978 0.44978213 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 2.5 0.5 1 1 41.575 41.575 2 9.213E-05 11883 TMT1-2 154.92 20.068 301.26 654.3 570.59 484.93 419.4 571.13 287 643 585 482 441 547 2 2 2 2 2 2 61096 17912 1234 17703 27444;27445 35464;35465 35465 2 TLEEAVNNIITFLGMQPCER Unmodified 2334.1348 0.13480228 2838 Q9UBF2 COPG2 Coatomer subunit gamma-2 yes yes 0 0 0 0 0 9 0 1 104.28 104.28 3 0.022132 32515 TMT1-8 37.4 18.076 7.476 6.9439 0 16.395 0 7.462 7 7 0 15 0 7 1 1 0 1 0 1 1021.3 17913 2838 17704 27446 35466 35466 1 TLEEDEEELFK Unmodified 1380.6297 0.62965657 1116 P43487-2;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 0 2 0 2 66.509 66.509 2;3 8.5307E-12 21259 TMT1-1 174.41 120.66 230.55 272.34 154.56 193.69 195.39 234.27 217 273 167 189 203 225 2 2 2 2 2 2 71857 17914 1116 17705 27447;27448 35467;35468 35467 2 TLEEEAK Unmodified 818.40216 0.40216323 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 2.5 0.5 1 1 37.383 37.383 2 0.0052347 10008 TMT1-1 134.85 50.152 7543.3 9969.8 9919.9 7648 9752 9869 7132 10004 10071 7706 9983 9519 3 3 3 3 3 3 907510 17915 1019 17706 27449;27450 35469;35470;35471 35469 3 TLEEEAKTHEAQIQEMR Unmodified 2041.9739 0.97386819 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 2 0 1 46.72 46.72 4 1.6729E-07 13685 TMT1-1 98.165 84.652 92.238 100.61 101.72 48.094 84.372 128.71 87 102 102 51 87 123 1 1 1 1 1 1 12532 17916 1019 17707 27451 35472 35472 1 TLEEEFAR Unmodified 993.47673 0.47672516 2628 Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 0 2 0 1 47.398 47.398 2 0.0079576 13893 TMT1-1 102.46 34.25 77.002 139.89 104.54 103.71 82.072 121.31 73 138 109 102 87 116 1 1 1 1 1 1 13276 17917 2628 17708 27452 35473 35473 1 TLEELYLDANQIEELPK Unmodified 2017.0256 0.025552634 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96NW7-3;Q96NW7-2;Q96NW7 ERBB2IP;LRRC7 Protein LAP2;Leucine-rich repeat-containing protein 7 yes no 0 0 0 0 0 4.5 0.5 1 1 81.301 81.301 3;4 1.2077E-07 26577 TMT1-3 99.055 78.949 69.223 65.01 32.686 69.566 33.159 68.344 65 66 37 66 37 65 2 2 2 2 2 2 11004 17918 2448 17709 27453;27454 35474;35475 35474 2 TLEFPFVNGSAEIMSLVLAESSPGR Unmodified 2650.3313 0.33125348 16 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 0 7 0 1 103.1 103.1 3 2.1311E-07 33323 TMT1-6 69.435 61.247 1.0385 1.9891 4.1186 1.9042 1.9332 2.0768 1 2 4 2 2 2 1 1 1 1 1 1 1024.5 17919 16 17710 27455 35476 35476 1 TLEGELHDLR Unmodified 1181.6041 0.60405094 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 2.5 0.5 1 1 45.916 45.916 3 4.8996E-07 13438 TMT1-1 158.47 84.006 169.51 248.81 153.32 90.085 187.11 187.61 160 247 160 94 189 181 3 3 3 3 3 3 44273 17920 429 17711 27456;27457 35477;35478;35479 35477 3 TLEGPENCLKPK Unmodified 1384.7021 0.70205043 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 1 6 0 1 44.857 44.857 3 0.0001485 12127 TMT1-5 99.844 68.846 130.03 197.1 159.94 185.73 136.9 181.58 123 196 167 181 145 174 1 1 1 1 1 1 18317 17921 1229 17712 27458 35480 35480 1 TLELNVLVPPAPPSCR Unmodified 1761.9447 0.94474031 2363 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 0 7 0 1 68.865 68.865 2 6.9699E-06 20967 TMT1-6 94.551 76.687 30.67 27.929 51.374 44.384 34.333 37.396 29 29 51 44 36 36 1 1 1 1 1 1 8873 17922 2363 17713 27459 35481 35481 1 TLEQHDNIVTHYK Unmodified 1596.7896 0.78961988 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 0 5 0 1 38.753 38.753 4 7.9195E-05 9536 TMT1-4 92.039 84.907 176.91 242.6 177.23 143.9 213.8 282.79 167 242 184 145 220 271 1 1 1 1 1 1 19531 17923 237 17714 27460 35482 35482 1 TLEQHENFVEVAR Unmodified 1570.774 0.77396981 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 4 0 1 42.776 42.776 3 0.034387 11382 TMT1-3 45.17 21.565 130.29 158.96 149.15 114.97 155.6 188.51 123 160 152 116 160 181 1 1 1 1 1 1 65829 17924 736 17715 27461 35483 35483 1 TLEQTGHVSSENK Unmodified 1428.6845 0.68448611 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 5 1 1 1 31.796 31.796 3 0.00010057 7026 TMT1-3 92.063 63.257 131.15 157.2 187.25 160.51 170.55 118.79 124 159 189 160 174 116 2 2 2 2 2 2 18623 17925 1723 17716 27462;27463 35484;35485 35484 2 TLESIMACCLSEEAK Acetyl (Protein N-term) 1782.7838 0.7838075 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 1 0 0 0 4 0 1 84.03 84.03 2 6.7988E-16 27568 TMT1-3 65.842 50.576 15.745 45.414 20.348 14.644 28.628 30.097 15 44 22 15 29 29 1 1 1 1 1 1 3511.6 17926 1211 17717 27464 35486 35486 1 TLESLLAHLQEQHGLR Unmodified 1843.9904 0.99044495 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 8 0 1 62.903 62.903 4 4.4008E-20 18685 TMT1-7 157.35 136.69 46.551 73.721 48.571 43.837 72.292 59.765 44 73 51 44 73 58 1 1 1 1 1 1 12354 17927 1081 17718 27465 35487 35487 1 TLESSIQGLR Unmodified 1102.5982 0.59823728 2314 Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A yes yes 0 0 0 0 0 5.5 0.5 1 1 50.013 50.013 2 6.1807E-05 14074 TMT1-5 109.88 63.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17928 2314 17719 27466;27467 35488;35489 35489 2 TLESVDPLGGLNTIDILTAIR Unmodified 2210.2158 0.21581302 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 7 0 1 92.141 92.141 3 6.0577E-40 29790 TMT1-6 171.37 153.45 69.877 95.071 77.591 65.375 55.596 60.242 66 95 80 65 58 58 2 2 2 2 2 2 72839 17929 68 17720 27468 35490;35491 35490 2 TLETQSALGPALQAAFK Unmodified 1744.9359 0.93594977 357 O95486 SEC24A Protein transport protein Sec24A yes yes 0 0 0 0 0 8 0 1 70.456 70.456 3 0.0028812 21658 TMT1-7 54.004 14.656 38.006 65.783 48.724 52.062 41.293 68.112 36 65 51 51 44 65 1 1 1 1 1 1 5126.9 17930 357 17721 27469 35492 35492 1 TLETVPLER Unmodified 1056.5815 0.58152458 848 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 0 0 0 0 0 3.5 0.5 1 1 48.152 48.152 2 0.00025733 13513 TMT1-3 143.28 66.002 421.94 667.99 474.24 429.71 522.79 740.88 399 662 495 428 543 709 3 3 3 3 3 3 104430 17931 848 17722 27470;27471 35493;35494;35495 35495 3 TLETYQQLFYLLQTNPLYLAK Unmodified 2559.3625 0.36247726 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 9 0 2 98.92 98.92 3;4 2.48E-15 30598 TMT1-8 98.175 63.898 107.99 107.2 153.09 123.08 118.62 127.73 102 110 153 123 123 123 4 4 4 4 4 4 37831 17932 1723 17723 27472;27473 35496;35497;35498;35499 35499 4 TLEVEIEPGVR Unmodified 1240.6663 0.66631685 2846 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 0 2.5 0.5 1 1 54.986 54.986 2 0.00024063 16913 TMT1-1 106.35 62.718 100.77 114.99 98.333 103.8 96.967 144.34 95 116 102 102 102 138 2 2 2 2 2 2 24822 17933 2846 17724 27474;27475 35500;35501 35500 2 TLFGFLGK Unmodified 881.50109 0.50108942 1595 Q05519-2;Q05519 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 0 9 0 1 73.927 73.927 2 0.0060225 21143 TMT1-8 124.83 72.151 76.979 123.64 122.15 70.345 115.03 89.46 73 123 123 73 116 87 1 1 1 1 1 1 23867 17934 1595 17725 27476 35502 35502 1 TLFGQLK Unmodified 805.46979 0.46978929 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 9 0 1 57.511 57.511 2 0.010296 14740 TMT1-8 91.626 11.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17935 2596 17726 27477 35503 35503 1 TLFITGLPR Unmodified 1016.6019 0.6018661 328 O94886 TMEM63A CSC1-like protein 1 yes yes 0 0 0 0 0 9 0 1 63.65 63.65 2 0.0070076 17149 TMT1-8 96.948 45.982 146.46 110.59 176.91 89.531 141.84 166.51 138 116 174 94 145 160 1 1 1 1 1 1 23659 17936 328 17727 27478 35504 35504 1 TLFPGTDHIDQLK Unmodified 1483.7671 0.76709352 1890 Q16539;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 6 0 1 57.564 57.564 3 4.0129E-06 17107 TMT1-5 110.92 80.864 68.958 71.828 71.431 65.058 91.984 97.579 65 73 73 65 94 94 1 1 1 1 1 1 14575 17937 1890 17728 27479 35505 35505 1 TLFPLIEAK Unmodified 1030.6063 0.60628277 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 8.5 0.5 1 1 70.966 70.966 2 6.4606E-05 21946 TMT1-7 152.34 88.776 476.61 835.9 520.45 568.75 654.69 856.5 451 824 553 560 679 821 4 4 4 4 4 4 103320 17938 676 17729 27480;27481 35506;35507;35508;35509 35507 4 TLFSFLGEIEELR Unmodified 1552.8137 0.81370936 2281 Q8WXA9-2 yes yes 0 0 0 0 0 7 0 1 92.964 92.964 3 0.0033194 30114 TMT1-6 65.495 52.295 7.4331 15.459 0 7.5245 6.7267 7.2701 7 15 0 7 7 7 1 1 0 1 1 1 2184.2 17939 2281 17730 27482 35510 35510 1 TLFSLMQYSEEFR Unmodified 1649.7759 0.77594365 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 8 0 1 80.77 80.77 2 0.02289 25716 TMT1-7 63.864 48.891 38.273 27.671 36.141 21.492 21.24 22.846 36 29 36 22 22 22 1 1 1 1 1 1 4711.4 17940 647 17731 27483 35511 35511 1 TLFSNIVLSGGSTLFK Unmodified 1682.9243 0.92432245 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 0 9 0 3 83.409 83.409 2;3;4 1.7757E-22 24872 TMT1-8 150.12 115.4 84.833 101.42 83.287 97.303 83.392 91.428 80 102 87 95 87 88 2 2 2 2 2 2 14237 17941 1381 17732 27484;27485;27486 35512;35513;35514 35512 3 TLGCYVEILK Unmodified 1194.6318 0.63184559 2150 Q8IY22-3;Q8IY22-2;Q8IY22 CMIP C-Maf-inducing protein yes no 0 0 0 0 0 7 0 1 66.945 66.945 2 3.3966E-06 20211 TMT1-6 155.42 111.11 153.93 161.77 140.55 131.49 176.43 199.64 145 164 145 131 181 192 1 1 1 1 1 1 24709 17942 2150 17733 27487 35515 35515 1 TLGDFAAEYAK Unmodified 1184.5714 0.57135383 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 6 0 1 61.37 61.37 3 0.0024837 18583 TMT1-5 76.655 51.438 77.099 108.86 114.41 93.81 112.34 136.44 73 109 116 94 116 131 1 1 1 1 1 1 22289 17943 606 17734 27488 35516 35516 1 TLGIEPEK Unmodified 885.48075 0.48074791 2778 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 47.66 47.66 2 0.0043095 13082 TMT1-4 76.827 42.019 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17944 2778 17735 27489 35517 35517 1 TLGLYGK Unmodified 750.42759 0.42759012 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 6 3.56 1 1 1 50.585 50.585 2 0.0098408 12333 TMT 1-phospho 110.61 72.966 3020.4 4491.6 4144.7 2774.7 4147 4309.8 2859 4478 4208 2836 4228 4154 4 4 4 4 4 4 480700 17945 583 17736 27490;27491;27492 35518;35519;35520;35521 35518 4 TLGLYGKDQQEAALVDMVNDGVEDLR Unmodified 2848.3913 0.39128756 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 1 5 0 1 78.366 78.366 3 9.9073E-22 25117 TMT1-4 107.23 82.019 30.774 35.771 27.413 37.348 19.448 53.811 29 36 29 36 22 51 1 1 1 1 1 1 11688 17946 583 17737 27493 35522 35522 1 TLGPSQEETGGVFLCPWR Unmodified 2032.9677 0.9676606 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6 2.38 1 2 1 2 69.418 69.418 2;3 6.9911E-36 20985 TMT1-6 182.15 131.85 761.71 915.13 868.2 638.75 712.42 1000.9 719 922 883 644 742 958 9 9 9 9 9 9 573940 17947 565 17738 27494;27495;27496;27497;27498;27499 35523;35524;35525;35526;35527;35528;35529;35530;35531 35528 9 TLGTGSFGR Unmodified 894.45593 0.45593014 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22694-8 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 0 7 0 1 41.43 41.43 2 0.00028522 10127 TMT1-6 142.04 115.56 160.93 223.5 174.92 174.67 270.54 234.26 152 223 182 174 274 227 1 1 1 1 1 1 24542 17948 760;850 17739 27500 35532 35532 1 TLGTMIAGDTSGDYR Unmodified 1556.7141 0.71407167 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 5 0 1 55.011 55.011 3 0.004276 15978 TMT1-4 58.794 58.683 54.19 57.374 40.913 66.888 91.35 113.59 51 58 44 65 94 109 1 1 1 1 1 1 9198.7 17949 804 17740 27501 35533 35533 1 TLGWEALLAR Unmodified 1128.6291 0.62914348 1887 Q16512-2;Q16512 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 9 0 1 70.11 70.11 2 7.3646E-05 19722 TMT1-8 118.67 49.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17950 1887 17741 27502 35534 35534 1 TLHELLER Unmodified 1009.5556 0.55564418 320 O75995 SASH3 SAM and SH3 domain-containing protein 3 yes yes 0 0 0 0 0 5 0 1 43.665 43.665 3 0.0047708 11450 TMT1-4 85.666 43.437 30.586 66.55 32.779 45.489 34.539 29.928 29 65 36 44 36 29 1 1 1 1 1 1 19337 17951 320 17742 27503 35535 35535 1 TLHEWLQQHGIPGLQGVDTR Unmodified 2284.1713 0.17126286 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 8 0 1 61.967 61.967 4 6.1076E-10 18351 TMT1-7 94.057 85.914 99.641 146.2 81.27 80.585 106.94 98.218 94 145 87 80 109 95 2 2 2 2 2 2 9002.8 17952 917 17743 27504 35536;35537 35537 2 TLHLQTGNLLNWGR Unmodified 1621.8689 0.86887325 1156 P48507;P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit yes no 0 0 0 0 0 9 0 1 60.82 60.82 3 1.878E-12 16037 TMT1-8 125.84 102.49 61.355 72.086 86.642 64.145 92.283 90.109 58 73 87 65 94 87 1 1 1 1 1 1 14847 17953 1156 17744 27505 35538 35538 1 TLHPAVHAGILAR Unmodified 1354.7834 0.78335271 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 1 36.833 36.833 3 2.7239E-05 7004 TMT1-8 87.001 59.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17954 981 17745 27506 35539 35539 1 TLHPDLGTDK Unmodified 1095.556 0.55603811 385 P00338;P00338-3;P00338-4;P00338-5;P00338-2 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 5 0 1 40.214 40.214 3 0.0081079 10132 TMT1-4 45.077 9.5361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17955 385 17746 27507 35540 35540 1 TLHSDDEGTVLDDSR Unmodified 1658.7384 0.73837217 46 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 0 2 0 1 38.928 38.928 3 8.4749E-28 10536 TMT1-1 149.3 143.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17956 46 17747 27508 35541 35541 1 TLHYECIVLVK Unmodified 1373.7377 0.73770765 2895 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 0 7 0 1 56.331 56.331 3 0.0015009 16015 TMT1-6 81.525 51.718 194.54 294.69 236.06 208.57 249.99 360.64 184 293 244 208 260 345 1 1 1 1 1 1 25147 17957 2895 17748 27509 35542 35542 1 TLIEDEIATILK Unmodified 1357.7704 0.77044757 1682 Q13188;Q13188-2 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit yes no 0 0 0 0 0 5 0 1 85.94 85.94 2 0.00027407 28063 TMT1-4 101.93 64.737 23.333 28.927 21.301 14.592 28.337 38.633 22 29 22 15 29 37 1 1 1 1 1 1 2207.7 17958 1682 17749 27510 35543 35543 1 TLIEELK Unmodified 844.49058 0.49058431 738 Q03060-23;Q03060-9;Q03060-24;Q03060-8;Q03060-32;Q03060-26;Q03060-21;Q03060-31;Q03060-6;P18846-2;P16220-3;P18846;P16220-2;P16220 ATF1;CREB1 Cyclic AMP-dependent transcription factor ATF-1;Cyclic AMP-responsive element-binding protein 1 yes no 0 0 0 0 0 5 0 1 58.107 58.107 2 0.019116 17147 TMT1-4 98.299 8.7495 115.18 206.16 123.25 124.3 148.6 197.23 109 203 131 123 154 189 1 1 1 1 1 1 16445 17959 738 17750 27511 35544 35544 1 TLIEFLLR Unmodified 1003.6066 0.60661712 932 P28838-2;P28838 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 0 9 0 1 80.881 80.881 2 0.0071844 23971 TMT1-8 110.31 30.081 199.75 403.96 170.32 200.48 191.38 342.05 189 395 189 196 203 326 2 2 2 2 2 2 48163 17960 932 17751 27512 35545;35546 35546 2 TLILDVPPGVEK Unmodified 1279.7388 0.73875351 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6 0 2 65.7 65.7 2;3 0.00052819 20378 TMT1-5 84.289 52.281 306.2 504.52 408.49 317.25 433.83 405.49 290 500 420 320 442 392 5 5 5 5 5 5 28663 17961 570 17752 27513;27514 35547;35548;35549;35550;35551 35549 5 TLILVAK Unmodified 756.51093 0.51092582 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 57.728 57.728 2 0.0090278 14814 TMT1-8 126.54 65.579 169.65 235.18 141.15 138.78 193.75 203.41 160 234 150 138 198 196 1 1 1 1 1 1 10580 17962 822 17753 27515 35552 35552 1 TLINELVK Unmodified 928.55933 0.55933258 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 61.882 61.882 2 0.0056403 18200 TMT1-6 116.05 6.9408 138.85 161.56 150.36 83.293 150.81 126.81 131 163 152 87 152 123 1 1 1 1 1 1 15752 17963 1763 17754 27516 35553 35553 1 TLIQNCGASTIR Unmodified 1332.682 0.68198369 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 7 0 1 42.939 42.939 2 5.2355E-10 10730 TMT1-6 155.99 79.761 92.413 84.904 85.722 64.027 101.47 66.394 87 87 87 65 102 65 1 1 1 1 1 1 17011 17964 1178 17755 27517 35554 35554 1 TLISDIEAVK Unmodified 1087.6125 0.61249036 2230 Q8NG11;Q8NG11-2;Q8NG11-3 TSPAN14 Tetraspanin-14 yes no 0 0 0 0 0 5 0 1 66.884 66.884 2 0.045529 20637 TMT1-4 65.278 39.827 53.75 72.339 102.19 79.908 76.643 98.017 51 73 102 80 80 94 1 1 1 1 1 1 5202.5 17965 2230 17756 27518 35555 35555 1 TLIYITLYISECLKK Unmodified 1857.0322 0.032158336 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 1 9 0 1 89.826 89.826 4 0.0055295 27342 TMT1-8 47.532 26.579 38.162 51.105 35.069 14.026 14.804 7.0396 36 51 36 15 15 7 1 1 1 1 1 1 2116.6 17966 130 17757 27519 35556 35556 1 TLKIPAMTIAK Unmodified 1185.7155 0.71551564 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 9 0 1 57.999 57.999 3 0.0063734 14948 TMT1-8 63.76 30.535 115.68 137.4 97.628 87.75 80.937 175.71 109 138 102 87 87 167 1 1 1 1 1 1 8995.9 17967 638 17758 27520 35557 35557 1 TLKPEEQR Unmodified 999.53491 0.53490874 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 5 0 1 30.332 30.332 3 0.032657 6259 TMT1-4 64.297 32.363 61.284 87 85.907 60.565 110.63 108.77 58 87 87 62 112 105 1 1 1 1 1 1 12798 17968 1833 17759 27521 35558 35558 1 TLKPGTMSPEAFLQEAQVMK Unmodified 2205.1174 0.1173613 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 1 8 0 1 71.083 71.083 4 0.015827 21841 TMT1-7 40.432 19.775 108.01 152.56 112.67 70.626 130.18 105.02 102 152 116 73 131 102 1 1 1 1 1 1 9713.9 17969 673 17760 27522 35559 35559 1 TLKPTLFPAVPR Unmodified 1338.8024 0.80235682 2910 Q9ULC5-3;Q9ULC5;Q9ULC5-4 ACSL5 Long-chain-fatty-acid--CoA ligase 5 yes no 0 0 0 0 1 9 0 1 56.613 56.613 3 0.00073086 14398 TMT1-8 78.814 46.063 76.918 115.92 138.85 70.079 76.289 121.48 73 116 138 73 80 116 1 1 1 1 1 1 6438.3 17970 2910 17761 27523 35560 35560 1 TLLAVTRPFISSK Unmodified 1431.8449 0.84494991 1662 Q12982;Q12982-2 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 yes no 0 0 0 0 1 9 0 1 60.621 60.621 3 0.0021352 16010 TMT1-8 63.727 0 84.25 177.5 116.75 118.06 93.929 213.72 80 174 123 116 102 203 1 1 1 1 1 1 14789 17971 1662 17762 27524 35561 35561 1 TLLEFLK Unmodified 862.51641 0.51640513 1764 Q14232-2;Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 0 0 9 0 1 73.391 73.391 2 0.014889 20991 TMT1-8 100.45 23.552 92.395 101.04 74.998 112.99 88.974 121.12 87 102 80 109 94 116 1 1 1 1 1 1 10723 17972 1764 17763 27525 35562 35562 1 TLLEGSGLESIISIIHSSLAEPR Unmodified 2421.3115 0.31150432 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 92.26 92.26 3 2.1103E-21 28175 TMT1-8 99.441 75.399 7.3124 22.678 14.158 15.146 21.532 22.838 7 22 15 15 22 22 1 1 1 1 1 1 6166.5 17973 1176 17764 27526 35563 35563 1 TLLENTAITIGR Unmodified 1300.7351 0.73506511 2336 Q92973-2;Q92973;Q92973-3;O14787-2 TNPO1;TNPO2 Transportin-1;Transportin-2 yes no 0 0 0 0 0 7 0 1 60.358 60.358 3 1.8665E-05 17616 TMT1-6 84.352 59.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17974 2336 17765 27527 35564 35564 1 TLLEQLDDDQ Unmodified 1188.551 0.55101232 273 O75400-2;O75400-3;O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 0 2 0 1 69.931 69.931 2 0.00677 22589 TMT1-1 88.948 44.639 17.889 39.867 25.302 32.096 14.821 43.283 17 39 27 31 17 41 1 1 1 1 1 1 7042.1 17975 273 17766 27528 35565 35565 1 TLLETLQK Unmodified 944.55425 0.5542472 2865 Q9UHG3-2;Q9UHG3 PCYOX1 Prenylcysteine oxidase 1 yes no 0 0 0 0 0 7 0 1 58.926 58.926 2 0.045577 17114 TMT1-6 75.825 31.106 161.51 166.84 124.63 141.22 116.17 174.71 152 169 131 138 123 167 1 1 1 1 1 1 8306.8 17976 2865 17767 27529 35566 35566 1 TLLFTFNVPGSGNTYPK Unmodified 1854.9516 0.95159983 2358 Q96A33-2;Q96A33 CCDC47 Coiled-coil domain-containing protein 47 yes no 0 0 0 0 0 9 0 1 75.562 75.562 3 0.0038892 21869 TMT1-8 48.883 33.794 85.048 85.823 60.424 97.153 105.66 113.18 80 87 65 94 109 109 1 1 1 1 1 1 7726 17977 2358 17768 27530 35567 35567 1 TLLGDGPVVTDPK Unmodified 1310.7082 0.70818166 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 0 4.83 1.77 1 2 3 57.832 57.832 2;3;4 6.3662E-28 17004 TMT1-4 196.24 151.08 2780.8 4012.9 2627.5 2773.3 3043.2 4105.7 2625 3989 2778 2733 3166 3933 7 7 7 7 7 7 954740 17978 1269 17769 27531;27532;27533;27534;27535;27536 35568;35569;35570;35571;35572;35573;35574 35571 7 TLLHTLCK Unmodified 984.54264 0.54263666 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 9 0 1 45.353 45.353 3 0.020694 10012 TMT1-8 52.716 35.485 37.893 81.657 54.316 75.204 71.656 36.331 36 80 58 73 73 36 1 1 1 1 1 1 4844.9 17979 1744 17770 27537 35575 35575 1 TLLILFKPLISFK Unmodified 1531.9742 0.97417317 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 1 9 0 1 89.062 89.062 3 0.0011356 27098 TMT1-8 69.03 54.469 0 60.877 49.932 35.862 27.102 46.131 0 58 51 36 29 44 0 1 1 1 1 1 2740.3 17980 1616 17771 27538 35576 35576 1 TLLQVLQDPALK Unmodified 1337.7919 0.79185171 1982 Q5TEJ8-3;Q5TEJ8-5;Q5TEJ8;Q5TEJ8-2 THEMIS2 Protein THEMIS2 yes no 0 0 0 0 0 8 0 1 75.109 75.109 3 0.00041886 23468 TMT1-7 86.772 59.151 30.666 59.216 25.625 45.926 33.969 45.935 29 58 29 44 36 44 1 1 1 1 1 1 6209 17981 1982 17772 27539 35577 35577 1 TLLRDEK Unmodified 873.49198 0.4919813 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 4 2.16 1 1 1 35.974 35.974 3 0.015804 8546 TMT1-5 83.753 56.79 5967.5 7848 7503.5 5055.2 6962.6 8027.6 5640 7872 7606 5154 7142 7717 3 3 3 3 3 3 665920 17982 3010 17773 27540;27541;27542 35578;35579;35580 35580 3 TLLSDPTYR Unmodified 1064.5502 0.55022446 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 0 5 0 1 47.551 47.551 2 0.00031562 13003 TMT1-4 141.2 91.871 184.01 276.54 218.19 173.8 179.53 296.56 174 275 225 174 189 283 2 2 2 2 2 2 53159 17983 986 17774 27543 35581;35582 35581 2 TLLSNLEEAK Unmodified 1116.6027 0.60265396 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 6 0 2 60.211 60.211 2;3 0.00015311 18132 TMT1-5 133.81 49.86 323.86 327.55 294.6 268.58 360.98 399.04 305 333 303 268 370 384 2 2 2 2 2 2 44735 17984 639 17775 27544;27545 35583;35584 35583 2 TLLSNLEEAKK Unmodified 1244.6976 0.69761697 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 1 7 0 1 54.87 54.87 3 0.0011914 15471 TMT1-6 89.44 44.593 277.64 538.06 490.81 346.29 605.09 648.98 264 531 499 354 615 625 1 1 1 1 1 1 41312 17985 639 17776 27546 35585 35585 1 TLLTLDEQVLSFQR Unmodified 1661.8988 0.89883598 2404 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 yes yes 0 0 0 0 0 7 0 1 76.203 76.203 3 0.0013014 23859 TMT1-6 68.972 48.019 30.804 28.302 28.547 21.95 20.963 30.316 29 29 29 22 22 29 1 1 1 1 1 1 4303.7 17986 2404 17777 27547 35586 35586 1 TLLVADPR Unmodified 883.51272 0.51271674 1419 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 0 6 0 1 46.878 46.878 2 0.01207 12923 TMT1-5 97.071 21.76 161.2 225.32 128.41 147.61 171.45 231.76 152 224 138 145 178 222 1 1 1 1 1 1 38187 17987 1419 17778 27548 35587 35587 1 TLLWTELFR Unmodified 1177.6495 0.64954457 53 O00217 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes yes 0 0 0 0 0 9 0 1 80.402 80.402 2 0.00099386 23779 TMT1-8 128.36 75.034 153.82 227.28 104.4 150.31 161.82 173.4 145 225 116 146 167 167 2 2 2 2 2 2 29068 17988 53 17779 27549 35588;35589 35589 2 TLMELLNQMDGFDTLHR Unmodified 2032.971 0.97103142 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 7 0 1 84.335 84.335 3 0.00031729 27019 TMT1-6 70.942 53.025 23.162 36.006 44.066 28.401 35.581 22.437 22 36 44 29 36 22 1 1 1 1 1 1 4701.5 17989 1437 17780 27550 35590 35590 1 TLMNLGGLAVAR Unmodified 1214.6805 0.68052712 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 6.75 3.34 1 1 2 64.087 64.087 2;3 1.2572E-18 17287 TMT1-8 185.33 118.37 1643.8 2445.3 2077.5 1693.7 1806.8 2963.1 1555 2435 2133 1694 1899 2828 5 5 5 5 5 5 1314600 17990 1052 17781 27551;27552;27553;27554 35591;35592;35593;35594;35595 35594 5 TLMNLGGLAVAR Oxidation (M) 1230.6754 0.67544174 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 0 9 0 2 55.498 55.498 2 0.00017371 13861 TMT1-8 96.957 64.816 169.47 271.35 142.2 115.15 168.35 243.57 160 268 152 116 174 233 2 2 2 2 2 2 61340 17991 1052 17781 27555;27556 35596;35597 35596 201 2 TLNDELEIIEGMK Unmodified 1503.7491 0.7490602 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 4.33 0.471 2 1 77.367 77.367 2;3 3.3214E-09 24980 TMT1-3 129.34 103.96 230.5 417 220.9 282.71 307.92 371.78 218 410 240 276 319 357 3 3 3 3 3 3 95009 17992 638 17782 27557;27558;27559 35598;35599;35600 35598 3 TLNIFLTK Unmodified 948.56442 0.56441796 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 9 0 1 66.982 66.982 2 0.0097322 18486 TMT1-8 82.749 51.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17993 2251 17783 27560 35601 35601 1 TLNPVFDQSFDFSVSLPEVQR Unmodified 2424.1961 0.19614021 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 7 0 1 83.25 83.25 3 3.6687E-14 26583 TMT1-6 92.034 65.559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17994 3 17784 27561 35602 35602 1 TLNQLGTPQDSPELR Unmodified 1667.8479 0.84786304 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 4 0 1 50.773 50.773 3 1.0472E-10 14557 TMT1-3 122.33 116.03 107.67 175.38 149.31 116.1 95.082 182.77 102 174 153 116 102 174 2 2 2 2 2 2 26301 17995 147 17785 27562 35603;35604 35603 2 TLNQQLTNHIR Unmodified 1336.7211 0.72114638 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 9 0 1 37.622 37.622 3 0.024898 7260 TMT1-8 46.068 18.64 54.206 42.306 51.117 28.139 27.201 53.59 51 44 51 29 29 51 1 1 1 1 1 1 3108.1 17996 1226 17786 27563 35605 35605 1 TLPAAAFR Unmodified 845.47594 0.4759373 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 1 46.408 46.408 2 0.0055435 12222 TMT1-7 117.18 65.322 612.82 1019.1 916.49 791.95 956.33 1277.5 581 1011 939 791 991 1224 2 2 2 2 2 2 168320 17997 1067 17787 27564 35606;35607 35607 2 TLPETLDPAEYNISPETR Unmodified 2044.9953 0.99531514 339 O95168-2;O95168 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 0 0 0 0 0 4 0 1 65.73 65.73 3 3.4987E-14 20436 TMT1-3 120.39 115.63 107.88 183.5 107.98 134.23 134.07 119.83 102 181 116 131 138 116 3 3 3 3 3 3 16003 17998 339 17788 27565 35608;35609;35610 35609 3 TLPGDPGSPTDVQLVTQQVIQCAYDIAK Unmodified 3013.5067 0.50665167 1758 Q14161-11;Q14161-7;Q14161-6;Q14161-10;Q14161-8;Q14161-4;Q14161-5;Q14161-3;Q14161;Q14161-9 GIT2 ARF GTPase-activating protein GIT2 yes no 0 0 0 0 0 7 0 1 93.517 93.517 4 0.032825 30340 TMT1-6 26.273 14.308 7.3048 15.102 21.859 22.492 13.352 37.995 7 15 22 22 15 36 1 1 1 1 1 1 3080.7 17999 1758 17789 27566 35611 35611 1 TLPGSDWTPNAQFITR Unmodified 1802.8951 0.89514758 1332 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 65.069 65.069 3 0.0092798 19552 TMT1-7 51.359 43.749 68.982 55.707 80.996 42.076 63.19 83.477 65 58 80 44 65 80 1 1 1 1 1 1 9174 18000 1332 17790 27567 35612 35612 1 TLPGWNTDISNAR Unmodified 1443.7106 0.71064128 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 7 0 1 56.146 56.146 2 0.019483 15949 TMT1-6 64.827 38.709 61.826 49.653 26.447 36.83 50.092 45.475 58 51 29 36 51 44 1 1 1 1 1 1 8523.1 18001 962 17791 27568 35613 35613 1 TLPPATSTEPSVILSK Unmodified 1639.9033 0.90325265 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 7 0 1 60.483 60.483 3 0.02721 17709 TMT1-6 41.912 16.593 61.348 63.434 95.093 56.106 86.129 66.832 58 65 94 58 87 65 1 1 1 1 1 1 5768.4 18002 2107 17792 27569 35614 35614 1 TLPPGLLTPTPK Unmodified 1233.7333 0.7332742 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 8.5 0.5 1 1 61.09 61.09 3 1.0576E-07 16133 TMT1-8 120.57 78.921 1754.5 2027.5 1861.3 1655.7 1784.7 1890.3 1655 2046 1909 1647 1841 1821 6 6 6 6 6 6 132910 18003 535 17793 27570;27571 35615;35616;35617;35618;35619;35620 35617 6 TLPQAEALDR Unmodified 1112.5826 0.58258722 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 44.807 44.807 2 0.0023836 12144 TMT1-3 99.53 42.984 261.69 335.21 277.94 153.5 256 350.87 247 336 283 160 263 336 2 2 2 2 2 2 51016 18004 2881 17794 27572;27573 35621;35622 35622 2 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR Unmodified 3701.8757 0.87568105 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 7 0 1 95.522 95.522 4 5.0854E-14 31071 TMT1-6 80.36 71.965 15.934 14.642 14.598 15.105 22.318 0 15 15 15 15 22 0 1 1 1 1 1 0 8346.2 18005 681 17795 27574 35623 35623 1 TLQALQIPAAK Unmodified 1152.6867 0.68665836 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8.5 0.5 1 1 59.114 59.114 3 0.00071692 15301 TMT1-8 73.632 52.679 154.29 225.53 207.63 118.57 185.55 195.11 146 225 210 123 189 188 2 2 2 2 2 2 25801 18006 1139 17796 27575;27576 35624;35625;35626 35626 3 TLQEVTQLSQEAQR Unmodified 1629.8322 0.83221298 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 4 0 1 55.495 55.495 2 3.7267E-19 16438 TMT1-3 166.6 117.81 46.504 64.956 63.931 50.905 54.649 107.17 44 65 65 51 58 102 1 1 1 1 1 1 19223 18007 1076 17797 27577 35627 35627 1 TLQFIQQLAHDLVQQK Unmodified 1909.0421 0.042146171 155 O43149;O43149-3 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 84.23 84.23 3 8.9397E-07 25208 TMT1-8 94.544 72.704 30.627 66.662 25.91 29.504 34.467 53.382 29 65 29 29 36 51 1 1 1 1 1 1 4064.1 18008 155 17798 27578 35628 35628 1 TLQFSVWHHGR Unmodified 1366.6895 0.68945232 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 9 0 1 42.265 42.265 3 0.00048424 8852 TMT1-8 83.226 59.271 46.667 57.852 42.645 28.211 50.232 52.933 44 58 44 29 51 51 1 1 1 1 1 1 3265.5 18009 2378 17799 27579 35629 35629 1 TLQIFNIEMK Unmodified 1235.6584 0.6583947 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 8.33 0.471 2 1 72.197 72.197 2;3 0.00011111 22347 TMT1-7 138.25 72.998 200.56 230.29 181.49 183.7 234.32 210.78 189 232 189 182 239 204 3 3 3 3 3 3 40933 18010 1540 17800 27580;27581;27582 35630;35631;35632 35630 3 TLQLALDLVSSR Unmodified 1314.7507 0.75071518 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 8 0 1 75.638 75.638 2 0.0079047 23683 TMT1-7 75.849 32.357 115.81 91.338 115.61 86.07 113.25 120.42 109 95 116 87 116 116 2 2 2 2 2 2 10353 18011 1286 17801 27583 35633;35634 35634 2 TLQLDNNFEVK Unmodified 1319.6721 0.67213051 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 0 6 0 1 59.777 59.777 2 5.1733E-07 18007 TMT1-5 107.18 67.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18012 2918 17802 27584 35635 35635 1 TLQPSLPEEGVELDPHVR Unmodified 2015.0324 0.032369346 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 3 0 1 56.762 56.762 3 7.9059E-08 17928 TMT1-2 73.688 70.887 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18013 2223 17803 27585 35636 35636 1 TLQQQTFK Unmodified 992.5291 0.52909508 1302;1301 P54727;P54725;P54725-3;P54725-2 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A no no 0 0 0 0 0 7 0 1 43.005 43.005 2 5.9717E-05 10729 TMT1-6 159.28 79.807 152.57 258.36 287.12 160.45 264.18 316.53 145 257 287 167 270 304 2 2 2 2 2 2 34271 18014 1302;1301 17804 27586 35637;35638 35637 2 TLQSLACGK Unmodified 976.50117 0.50116577 1731 Q13620-3;Q13620-1;Q13620 CUL4B Cullin-4B no no 0 0 0 0 0 8 0 1 48.539 48.539 2 0.00010874 13038 TMT1-7 150.27 85.431 77.369 109.62 68.376 81.777 84.399 82.872 73 109 73 80 87 80 1 1 1 1 1 1 6966.6 18015 1731 17805 27587 35639 35639 1 TLQVQAAQFAK Unmodified 1203.6612 0.66117189 1508 P78537-2;P78537 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 0 0 0 0 0 8 0 1 53.694 53.694 2 3.2807E-06 15068 TMT1-7 101.3 64.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18016 1508 17806 27588 35640 35640 1 TLQVSPLDNGDLIR Unmodified 1539.8257 0.82567103 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 5 0 1 62.279 62.279 2 1.8275E-21 18797 TMT1-4 167.73 109.94 61.096 117.77 91.496 63.703 100.42 97.338 58 116 94 65 102 94 1 1 1 1 1 1 25899 18017 936 17807 27589 35641 35641 1 TLREQGVEEHETLLLR Unmodified 1922.0221 0.022139011 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 6 0 1 43.074 43.074 4 3.7281E-05 11410 TMT1-5 81.428 59.587 99.422 145.59 118.61 117.52 116.75 189.61 94 145 123 116 123 181 1 1 1 1 1 1 9242.5 18018 3010 17808 27590 35642 35642 1 TLSDATTK Unmodified 835.42871 0.42871234 2751 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 0 5 0 1 37.579 37.579 2 0.00069142 9080 TMT1-4 148.99 93.546 278.09 411.77 341.89 215.91 454.07 378.27 263 410 349 224 456 367 1 1 1 1 1 1 34880 18019 2751 17809 27591 35643 35643 1 TLSDVEDQK Unmodified 1033.4928 0.49276916 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 3 0 1 44.42 44.42 3 0.015082 13048 TMT1-2 61.691 10.887 46.574 50.04 64.835 50.683 63.601 60.013 44 51 65 51 65 58 1 1 1 1 1 1 5177.3 18020 1977 17810 27592 35644 35644 1 TLSDVEDQKELASPVSPELR Unmodified 2212.1223 0.12230657 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 1 4 0 1 57.927 57.927 3 0.00031606 17400 TMT1-3 55.804 41.643 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18021 1977 17811 27593 35645 35645 1 TLSDVQK Unmodified 789.42323 0.42323303 2278 Q8WWI5-3;Q8WWI5-2;Q8WWI5 SLC44A1 Choline transporter-like protein 1 yes no 0 0 0 0 0 5 0 1 40.126 40.126 2 0.019759 10093 TMT1-4 97.798 40.517 153.97 172.66 125.1 123.69 175.32 242.31 145 174 131 123 181 232 1 1 1 1 1 1 11502 18022 2278 17812 27594 35646 35646 1 TLSDYNIQK Unmodified 1080.5451 0.54513908 1463 P62979;P62987;P0CG47;P0CG48 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 0 5 2.35 1 2 1 49.425 49.425 2;3 0.00033344 13798 TMT1-5 114.64 69.886 1425.6 2525.5 1533.8 1258.2 1932.2 1660.1 1349 2488 1616 1268 1957 1609 4 4 4 4 4 4 527200 18023 1463 17813 27595;27596;27597;27598 35647;35648;35649;35650 35648 4 TLSEVEESISTLISQPN Unmodified 1845.9208 0.92075321 2186 Q8N668 COMMD1 COMM domain-containing protein 1 yes yes 0 0 0 0 0 5 0 1 94.655 94.655 3 0.00017848 31310 TMT1-4 74.789 47.454 30.876 22.809 21.249 23.147 7.0727 23.25 29 22 22 22 7 22 2 1 2 1 1 2 4368.3 18024 2186 17814 27599 35651;35652 35651 2 TLSGLEVSMVTAVPGR Unmodified 1615.8603 0.86034198 389 P00390-2;P00390-3;P00390 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 7 0 1 67.242 67.242 2 0.0018566 20317 TMT1-6 73.502 44.544 46.776 34.414 44.036 28.541 28.245 22.646 44 36 44 29 29 22 1 1 1 1 1 1 6435.9 18025 389 17815 27600 35653 35653 1 TLSGMESYCVR Unmodified 1301.5744 0.57440707 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 5 0 1 48.323 48.323 2 0.0074894 13371 TMT1-4 82.029 61.158 30.516 51.244 57.574 43.862 42.44 45.693 29 51 58 44 44 44 1 1 1 1 1 1 7460 18026 1233 17816 27601 35654 35654 1 TLSHPQQMALLDQTK Unmodified 1709.8771 0.87705468 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.8 3.25 2 1 1 1 49.533 49.533 3;4 1.3597E-43 13218 TMT1-6 209.53 160.05 1829.6 2185.6 1904.8 1502.5 1826.7 2729.1 1726 2200 1952 1510 1902 2609 6 6 6 6 6 6 405340 18027 3010 17817 27602;27603;27604;27605;27606 35655;35656;35657;35658;35659;35660 35658 6 TLSHPQQMALLDQTK Oxidation (M) 1725.872 0.8719693 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6.67 0.471 1 2 42.697 42.697 3;4 4.8801E-10 10652 TMT1-6 117.13 86.693 816.35 824.83 957.6 763.3 954.61 1213.6 770 842 966 767 986 1164 4 4 4 4 4 4 70745 18028 3010 17817 27607;27608;27609 35661;35662;35663;35664 35662 338 4 TLSLDEVYLIDSGAQYK Unmodified 1913.9622 0.9622241 2717 Q9NQW7;Q9NQW7-3 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 6 0 1 75.145 75.145 3 6.494E-06 24082 TMT1-5 87.669 67.301 37.954 58.082 64.059 58.259 70.016 106.73 36 58 65 58 73 102 1 1 1 1 1 1 15186 18029 2717 17818 27610 35665 35665 1 TLSSPTEPVKR Unmodified 1213.6667 0.6666512 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 1 6.5 0.5 1 1 36.097 36.097 3 1.46E-05 8089 TMT1-6 115.91 70.893 337.22 555.04 380.54 314.55 259.35 555.45 319 549 397 313 280 528 2 2 2 2 2 2 41743 18030 1069 17819 27611;27612 35666;35667 35667 2 TLSSSTQASIEIDSLYEGIDFYTSITR Unmodified 2996.4502 0.45024222 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 6 0 1 94.227 94.227 4 0.013048 31238 TMT1-5 35.55 28.438 15.829 37.015 13.259 15.057 29.122 15.159 15 36 15 15 29 15 1 1 1 1 1 1 2042.4 18031 641 17820 27613 35668 35668 1 TLSSVQNEVQEALQR Unmodified 1700.8693 0.86932676 668 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 0 5 0 1 65.058 65.058 3 4.9736E-08 19904 TMT1-4 89.466 56.968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18032 668 17821 27614 35669 35669 1 TLSTIATSTDAASVVHSTDLVVEAIVENLK Unmodified 3083.6238 0.62378991 1909 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 1 1 1 99.62 99.62 4 0.00027095 32524 TMT1-7 45.901 33.347 14.926 21.142 11.699 8.8814 20.516 30.329 14 21 12 9 21 29 2 3 2 2 3 3 2982.8 18033 1909 17822 27615;27616 35670;35671;35672 35671 3 TLTAVHDAILEDLVFPSEIVGK Unmodified 2366.2733 0.2733279 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 6 0 1 85.153 85.153 3 0.0015224 28048 TMT1-5 50.055 28.854 38.202 35.028 41.898 76.684 32.298 53.444 36 36 44 73 36 51 1 1 1 1 1 1 13907 18034 1412 17823 27617 35673 35673 1 TLTDEELADWK Unmodified 1319.6245 0.62451161 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 4 0 1 63.465 63.465 2 6.1326E-07 19556 TMT1-3 147.74 99.92 77.61 78.985 53.932 82.92 69.432 90.761 73 80 58 80 73 87 1 1 1 1 1 1 15743 18035 1073 17824 27618 35674 35674 1 TLTDELAALQITGVK Unmodified 1571.877 0.8770379 2204 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 0 6.5 0.5 1 1 77.792 77.792 3 8.3379E-05 25062 TMT1-5 82.529 59.612 108.34 123.26 81.873 96.963 105.93 105.71 102 124 87 95 109 102 2 2 2 2 2 2 14759 18036 2204 17825 27619;27620 35675;35676 35675 2 TLTEDEIATILQSTLK Unmodified 1774.9564 0.95641044 1665 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 0 7.33 0.471 2 1 89.575 89.575 3;4 6.2941E-16 28890 TMT1-6 133.66 103.97 122.33 204.64 185.49 137.29 132.28 167.85 116 203 189 138 138 161 4 4 4 4 4 4 29790 18037 1665 17826 27621;27622;27623 35677;35678;35679;35680 35677 4 TLTELILDAQEHVK Unmodified 1608.8723 0.87228688 759 P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 0 6 0 1 71.019 71.019 3 1.8338E-05 22410 TMT1-5 94.532 67.803 61.507 80.065 54.277 75.548 53.516 107.2 58 80 58 73 58 102 1 1 1 1 1 1 10471 18038 759 17827 27624 35681 35681 1 TLTELNK Unmodified 817.45453 0.45453316 45 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 0 6 0 1 45.558 45.558 3 0.0019207 12367 TMT1-5 110.34 65.806 161.26 181.24 155.58 131.29 139.08 191.11 152 183 160 131 145 183 1 1 1 1 1 1 14787 18039 45 17828 27625 35682 35682 1 TLTGTAALTVQSQEDNLR Unmodified 1916.9803 0.98033378 608 P09960;P09960-2 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 5 0 1 54.798 54.798 2 1.2214E-18 15894 TMT1-4 135.13 109.92 30.806 28.307 28.21 29.495 27.688 37.586 29 29 29 29 29 36 1 1 1 1 1 1 10746 18040 608 17829 27626 35683 35683 1 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK Unmodified 3057.5693 0.56925192 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 7 1 1 1 75.265 75.265 4 4.8923E-27 23535 TMT1-7 114.74 95.526 184.79 177.27 170.58 161.73 158.62 251.31 174 181 175 160 167 240 3 3 3 3 3 3 85088 18041 1379 17830 27627;27628 35684;35685;35686 35686 3 TLTLALIWQLMR Unmodified 1457.8428 0.84284142 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 9 0 1 95.115 95.115 2 1.5695E-07 29323 TMT1-8 131.52 89.229 54.154 64.827 40.765 60.18 41.69 45.714 51 65 44 58 44 44 1 1 1 1 1 1 9804.8 18042 690 17831 27629 35687 35687 1 TLTLPSLPLNSADEIYELR Unmodified 2144.1365 0.13650007 2056 Q6YHK3-4;Q6YHK3;Q6YHK3-3 CD109 CD109 antigen yes no 0 0 0 0 0 6 0 1 81.517 81.517 3 5.5933E-12 26533 TMT1-5 93.371 71.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18043 2056 17832 27630 35688 35688 1 TLTLVDTGIGMTK Unmodified 1348.7272 0.72720254 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 7.5 0.5 3 3 65.874 65.874 2;3 1.5341E-36 19643 TMT1-7 209.19 0 1012.8 1553 1224.5 1031.3 1141.4 1568.6 958 1543 1265 1030 1188 1502 9 9 9 9 9 9 204680 18044 561 17833 27631;27632;27633;27634;27635;27636 35689;35690;35691;35692;35693;35694;35695;35696;35697 35694 9 TLTPSYYR Unmodified 999.50255 0.50254598 2700 Q9NP72;Q9NP72-2 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 0 6 0 1 41.81 41.81 2 0.0010819 10902 TMT1-5 101.41 15.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18045 2700 17834 27637 35698 35698 1 TLTPTPDGK Unmodified 928.48656 0.48656157 2325 Q92888;Q92888-3;Q92888-2;Q92888-4 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 5.5 0.5 1 1 41.387 41.387 2 0.0017828 10725 TMT1-5 113.26 68.535 122.64 166.65 165.76 96.893 192.52 234.36 116 167 167 101 196 225 2 2 2 2 2 2 17254 18046 2325 17835 27638;27639 35699;35700 35700 2 TLTSDVANLANEKEELNNK Unmodified 2102.0491 0.049141622 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 1 5 0 1 62.046 62.046 3 1.7726E-05 18721 TMT1-4 67.057 60.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18047 251 17836 27640 35701 35701 1 TLTTLLEK Unmodified 917.54335 0.54334816 2152 Q8IYI6 EXOC8 Exocyst complex component 8 yes yes 0 0 0 0 0 7.5 0.5 1 1 61.83 61.83 2 0.0015853 18198 TMT1-6 86.67 51.57 53.665 149.81 50.873 58.902 77.609 97.989 51 145 58 58 80 94 1 1 1 1 1 1 5440.7 18048 2152 17837 27641;27642 35702;35703 35702 2 TLVDEVQELEAK Unmodified 1372.7086 0.70857559 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 3.5 0.5 1 1 69.848 69.848 3 1.7462E-05 23066 TMT1-2 104.87 63.222 108.26 99.309 114.77 95.139 98.684 105.92 102 102 116 95 102 102 3 3 3 3 3 3 11999 18049 2968 17838 27643;27644 35704;35705;35706 35704 3 TLVDIAK Unmodified 758.4538 0.45380487 2496 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 6.5 0.5 1 1 52.701 52.701 2 0.0089004 15156 TMT1-5 114.6 14.683 603.88 857.29 573.31 626.28 857.14 884.84 570 853 606 619 876 853 2 2 2 2 2 2 116550 18050 2496 17839 27645;27646 35707;35708 35707 2 TLVGICSEHQSR Unmodified 1385.6721 0.67214728 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 8 0 1 35.186 35.186 3 0.0014418 7768 TMT1-7 76.24 61.821 38.208 51.234 27.141 21.778 34.566 60.842 36 51 29 22 36 58 1 1 1 1 1 1 3642.6 18051 2642 17840 27647 35709 35709 1 TLVGSENPPLTVIR Unmodified 1494.8406 0.84059282 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 58.131 58.131 2 8.9841E-27 17381 TMT1-5 182.41 103.1 38.251 43.799 26.177 53.433 39.874 107.59 36 44 29 51 44 102 1 1 1 1 1 1 11813 18052 1723 17841 27648 35710 35710 1 TLVGVGASLGLR Unmodified 1141.6819 0.68190733 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 9 0 1 61.417 61.417 2 1.2589E-08 16250 TMT1-8 136.36 87.574 214.63 324.85 260.41 201.87 238.6 305.53 203 323 268 203 247 293 2 2 2 2 2 2 43254 18053 800 17842 27649 35711;35712 35711 2 TLVLIGASGVGR Unmodified 1141.6819 0.68190733 1534 Q00013-2;Q00013;Q00013-3 MPP1 55 kDa erythrocyte membrane protein yes no 0 0 0 0 0 9 0 1 58.925 58.925 2 3.6483E-09 15261 TMT1-8 144.55 81.016 77.355 102.02 77.161 64.834 85.728 66.844 73 102 80 65 87 65 1 1 1 1 1 1 23906 18054 1534 17843 27650 35713 35713 1 TLVLLDNLNVR Unmodified 1268.7452 0.74523587 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 8 0 1 68.768 68.768 3 9.3625E-07 20999 TMT1-7 98.754 60.668 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18055 1063 17844 27651 35714 35714 1 TLVLLMGK Unmodified 873.53576 0.53576037 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 0 5 4 1 1 68.171 68.171 2 0.0017058 18890 TMT1-8 139.31 74.51 10803 17724 13387 10615 13498 19158 10226 17553 13843 10674 14000 18333 8 8 8 8 8 8 2095200 18056 540 17845 27652;27653 35715;35716;35717;35718;35719;35720;35721;35722 35721 8 TLVLLMGK Oxidation (M) 889.53067 0.53067499 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 0 9 0 7 64.033 64.033 2 0.006185 17548 TMT1-8 97.798 65.577 1636.3 2064.1 1678.4 1450.4 1654.5 2148.7 1544 2070 1733 1447 1716 2060 13 13 13 13 13 13 306930 18057 540 17845 27654;27655;27656;27657;27658;27659;27660 35723;35724;35725;35726;35727;35728;35729;35730;35731;35732;35733;35734;35735 35728 99 13 TLVLSNLSYSATEETLQEVFEK Unmodified 2500.2585 0.2584657 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 5 2 1 4 89.846 89.846 3;4 1.0314E-36 29519 TMT1-5 144.92 131.73 82.639 112.22 82.21 82.888 97.74 88.887 78 112 86 82 100 86 3 3 3 3 3 3 56122 18058 786 17846 27661;27662;27663;27664;27665 35736;35737;35738;35739;35740 35737 5 TLVNPANVTFK Unmodified 1202.6659 0.66592292 291 O75608-2;O75608 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 0 9 0 1 59.502 59.502 3 8.315E-05 15482 TMT1-8 96.103 63.972 184.23 239.39 212.15 189.4 241.15 247.89 174 240 218 189 247 239 2 2 2 2 2 2 33015 18059 291 17847 27666 35741;35742 35741 2 TLVQQLYTTLCIEQHQLNK Unmodified 2329.21 0.21001614 2220 Q8NE86-3;Q8NE86 MCU Calcium uniporter protein, mitochondrial yes no 0 0 0 0 0 9 0 1 76.991 76.991 3 4.0019E-10 22415 TMT1-8 89.846 71.708 92.315 84.632 102.36 79.597 92.619 90.099 87 87 103 80 95 87 3 3 3 3 3 3 7279.1 18060 2220 17848 27667 35743;35744;35745 35743 3 TLVSVTK Unmodified 746.4538 0.45380487 545 P07900;P07900-2;Q58FG1 HSP90AA1;HSP90AA4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4 yes no 0 0 0 0 0 8.5 0.5 1 1 45.99 45.99 2 0.0018627 11967 TMT1-7 145.04 54.059 3493.3 5758 4199.1 3511.8 4300.2 5382.1 3306 5699 4361 3516 4442 5164 3 3 3 3 3 3 454310 18061 545 17849 27668;27669 35746;35747;35748 35746 3 TLVTLEQSR Unmodified 1045.5768 0.57677356 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 6 0 1 46.006 46.006 2 0.00036159 12567 TMT1-5 105.94 58.586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18062 20 17850 27670 35749 35749 1 TLVVHEK Unmodified 824.4756 0.47560295 392 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 0 5.33 3.3 1 1 1 34.687 34.687 3 0.0097825 7923 TMT1-5 81.548 61.761 1612.8 2523.3 2180.3 1591.4 2213.1 2628.5 1527 2508 2228 1613 2272 2525 4 4 4 4 4 4 425650 18063 392 17851 27671;27672;27673 35750;35751;35752;35753 35751 4 TLVWSEK Unmodified 861.45962 0.45961853 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 7 0 1 52.798 52.798 2 0.0080509 14620 TMT1-6 120.49 23.016 378.8 554.66 426.29 351.98 448.96 466.89 358 552 441 353 460 450 1 1 1 1 1 1 42386 18064 608 17852 27674 35754 35754 1 TLVWSEKEQVEK Unmodified 1474.7668 0.76675917 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 1 6 0 1 51.061 51.061 3 7.7401E-05 14569 TMT1-5 84.102 42.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18065 608 17853 27675 35755 35755 1 TLVYGGIFLYPANK Unmodified 1554.8446 0.84461556 589 P09467 FBP1 Fructose-1,6-bisphosphatase 1 yes yes 0 0 0 0 0 9 0 1 74.326 74.326 3 1.0428E-05 21370 TMT1-8 83.53 60.295 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18066 589 17854 27676 35756 35756 1 TLWHDPR Unmodified 923.46135 0.46134987 554;32 CON__Q28194;P07996;P07996-2;P35442 THBS1;THBS2 Thrombospondin-1;Thrombospondin-2 no no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 37.339 37.339 3 0.003667 9065 TMT1-5 98.458 52.088 2515.9 3463.6 2884.2 2274 2857.6 3355.2 2377 3460 2963 2287 2942 3224 9 9 9 9 9 9 512690 + 18067 32;554 17855 27677;27678;27679;27680;27681 35757;35758;35759;35760;35761;35762;35763;35764;35765 35759 9 TLWIWECGITAK Unmodified 1476.7435 0.74352131 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 9 0 1 76.076 76.076 3 0.00033861 22098 TMT1-8 84.365 59.43 145.82 218.89 192.9 119.02 208.28 172.08 138 218 196 123 210 167 2 2 2 2 2 2 55322 18068 681 17856 27682 35766;35767 35767 2 TLWNGQK Unmodified 845.43955 0.43955179 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 8.5 0.5 1 1 46.673 46.673 2 0.0077311 12231 TMT1-7 124.34 40.966 370.95 560.7 478.7 431.31 423.15 442.04 351 558 493 428 438 426 2 2 2 2 2 2 46769 18069 1555;1556 17857 27683;27684 35768;35769 35768 2 TLWSLVAFPK Unmodified 1160.6594 0.65938097 2340 Q93034 CUL5 Cullin-5 yes yes 0 0 0 0 0 9 0 1 80.204 80.204 2 2.0319E-05 23658 TMT1-8 124.92 86.566 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18070 2340 17858 27685 35770 35770 1 TLWTVLDAIDQMWLPVVR Oxidation (M) 2171.1449 0.14489668 782 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 1 0 0 9 0 1 104.94 104.94 3 1.4522E-08 32909 TMT1-8 89.866 61.783 7.4331 31.175 14.607 15.257 44.012 38.186 7 30 15 15 44 37 1 2 1 1 2 2 3087.3 18071 782 17859 27686 35771;35772 35772 150 2 TLYDFPGNDAEDLPFK Unmodified 1840.8519 0.85194536 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 5 0 2 74.398 74.398 3;4 0.00038313 23627 TMT1-4 73.093 53.254 169.34 248.34 182.28 145.04 137.2 227.41 160 247 189 145 145 217 2 2 2 2 2 2 61071 18072 1127 17860 27687;27688 35773;35774 35774 2 TLYDFPGNDAEDLPFKK Unmodified 1968.9469 0.94690838 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 1 6 0 1 66.823 66.823 4 0.00091244 20850 TMT1-5 63.631 46.751 61.484 63.812 71.933 65.417 71.3 59.793 58 65 73 65 73 58 1 1 1 1 1 1 11904 18073 1127 17861 27689 35775 35775 1 TLYGFGG Unmodified 713.33844 0.33844077 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 0 5.25 2.49 1 1 2 62.831 62.831 1;2 0.0071752 18679 TMT1-6 74.597 63.228 745.35 1610.2 1044.7 1013.6 1315.9 1538 708 1577 1100 1007 1353 1478 6 6 6 6 6 6 2238700 18074 1443 17862 27690;27691;27692;27693 35776;35777;35778;35779;35780;35781 35781 6 TLYGRPNWDNEFK Unmodified 1638.7791 0.77905519 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 1 7 0 1 52.439 52.439 3 0.0013955 14489 TMT1-6 77.204 52.027 138.49 211.26 170.19 105.52 184.79 234.58 131 210 174 109 189 225 1 1 1 1 1 1 18967 18075 477 17863 27694 35782 35782 1 TLYHSVHEK Unmodified 1112.5615 0.56145784 361 O95571 ETHE1 Persulfide dioxygenase ETHE1, mitochondrial yes yes 0 0 0 0 0 6 0 1 29.515 29.515 3 0.01419 6086 TMT1-5 62.463 33.116 23.076 44.399 51.485 20.577 21.282 22.845 22 44 51 22 22 22 1 1 1 1 1 1 1830.2 18076 361 17864 27695 35783 35783 1 TLYNNQPIDFLK Unmodified 1464.7613 0.76127986 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 7 0 1 67.367 67.367 3 1.992E-05 20380 TMT1-6 83.617 62.777 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18077 1739 17865 27696 35784 35784 1 TLYVEEVVPNVIEPSFGLGR Unmodified 2217.1681 0.16813455 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 6 0 1 82.574 82.574 3 2.6832E-05 26896 TMT1-5 70.414 67.025 38.856 72.643 80.459 34.716 49.42 67.88 37 72 80 37 51 65 2 2 2 2 2 2 13827 18078 1084 17866 27697 35785;35786 35785 2 TMAALAK Unmodified 704.3891 0.38909613 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 8 0 1 44.186 44.186 2 0.0078611 11293 TMT1-7 122.78 49.139 580.25 868.75 746.92 578.29 824.62 951.86 549 865 765 584 845 915 1 1 1 1 1 1 55526 18079 635 17867 27698 35787 35787 1 TMADGNEK Unmodified 864.36473 0.36473187 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 4 0 1 31.38 31.38 2 0.0010162 6896 TMT1-3 99.802 60.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18080 1588 17868 27699 35788 35788 1 TMADSSYTSEVQAILAFLSLQR Oxidation (M) 2446.205 0.20499034 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 1 0 0 8.5 0.5 1 1 98.456 98.456 3 2.516E-14 30383 TMT1-8 94.234 79.312 19.069 29.298 16.28 30.121 32.199 27.224 18 29 18 29 33 26 3 3 3 3 3 2 8873.4 18081 2112 17869 27700;27701 35789;35790;35791 35791 281 3 TMADSSYTSEVQAILAFLSLQR Unmodified 2430.2101 0.21007572 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 8.33 0.471 2 1 100.94 100.94 3;4 7.9704E-59 31377 TMT1-8 189.61 161.87 33.703 76.919 61.092 41.739 51.893 120.04 32 75 61 42 55 114 5 5 5 5 5 6 46313 18082 2112 17869 27702;27703;27704 35792;35793;35794;35795;35796;35797 35796 6 TMEIYVAQFSEIK Unmodified 1557.7749 0.77488102 2849 Q9UBW5;Q9UBW5-3 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 7 0 1 72.843 72.843 3 6.7604E-05 22592 TMT1-6 96.464 71.287 337.74 450.69 382.8 282.85 368.65 430.8 319 451 392 286 379 414 3 3 3 3 3 3 59467 18083 2849 17871 27705 35798;35799;35800 35799 3 TMEIYVAQFSEIKER Unmodified 1842.9186 0.91858514 2849 Q9UBW5;Q9UBW5-3 BIN2 Bridging integrator 2 yes no 0 0 0 0 1 7 0 1 65.409 65.409 3 5.3757E-05 19609 TMT1-6 89.471 81.382 61.58 64.078 55.628 66.74 52.602 145.61 58 65 58 65 58 138 1 1 1 1 1 1 10844 18084 2849 17872 27706 35801 35801 1 TMIDPTSKEDPK Unmodified 1360.6544 0.65443153 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 1 5 0 1 44.75 44.75 4 0.00087855 11922 TMT1-4 79.492 59.285 187.89 186.6 363.83 231.18 212.34 299.88 178 193 357 235 223 287 1 1 1 1 1 1 14749 18085 2682 17873 27707 35802 35802 1 TMLDSLWAAGQELQAWK Unmodified 1946.956 0.95603328 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 9 0 1 93.335 93.335 4 0.0023221 28624 TMT1-8 51.147 30.684 15.82 29.433 21.309 14.587 28.63 30.097 15 29 22 15 29 29 1 1 1 1 1 1 2570.8 18086 1928 17874 27708 35803 35803 1 TMLELINQLDGFDPR Unmodified 1760.8767 0.87672033 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 7 0 1 88.82 88.82 3 0.0006256 28695 TMT1-6 72.898 61.284 30.576 66.52 34.592 29.11 27.947 61.031 29 65 37 29 30 58 2 2 2 2 2 2 11315 18087 1033 17875 27709 35804;35805 35805 2 TMLELLNQLDGFDSR Unmodified 1750.856 0.85598488 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 7 0 1 89.399 89.399 3 3.0109E-15 28831 TMT1-6 137.73 128.32 38.4 20.467 21.049 29.922 27.669 37.586 36 22 22 29 29 36 1 1 1 1 1 1 12248 18088 1415 17876 27710 35806 35806 1 TMLELLNQLDGFEATK Unmodified 1821.9183 0.91825079 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 7 0 1 90.128 90.128 3 1.2351E-08 29103 TMT1-6 108.14 89.772 69.08 64.614 56.935 35.829 64.781 75.969 65 66 58 37 66 73 2 2 2 2 2 2 10326 18089 1416 17877 27711 35807;35808 35807 2 TMLESAGGLIQTAR Oxidation (M) 1462.745 0.74497787 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6 1 1 1 50.611 50.611 3 0.0014705 14316 TMT1-4 54.393 31.86 77.028 101.11 132.89 53.724 93.018 82.626 73 102 131 58 94 80 1 1 1 1 1 1 35571 18090 3010 17878 27712;27713 35809;35810 35809 339 2 TMLESAGGLIQTAR Unmodified 1446.7501 0.75006325 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.4 1.02 1 2 1 1 59.105 59.105 2;3 6.9266E-54 17172 TMT1-6 229 172.27 1192.2 1530.3 1219.7 1174.1 1236 1546.7 1125 1533 1266 1162 1284 1484 7 7 7 7 7 7 634230 18091 3010 17878 27714;27715;27716;27717;27718 35811;35812;35813;35814;35815;35816;35817 35813 7 TMLESLIADK Unmodified 1119.5846 0.58456105 2079;2399 Q7L576;Q7L576-2;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7 0 1 70.179 70.179 3 0.00092746 21443 TMT1-6 91.855 80.69 38.109 43.404 50.4 44.586 26.701 46.142 36 44 51 44 29 44 1 1 1 1 1 1 10189 18092 2079;2399 17879 27719 35818 35818 1 TMLETEEGILLLVR Unmodified 1615.8855 0.8854941 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 5.5 0.5 1 1 82.361 82.361 3 2.912E-10 26731 TMT1-4 119.25 101.43 84.92 70.359 94.923 72.23 101.08 97.32 80 73 95 73 103 94 3 3 3 3 3 3 12637 18093 228 17880 27720;27721 35819;35820;35821 35820 3 TMLITHMQDLQEVTQDLHYENFR Unmodified 2861.3476 0.3476486 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 6 0 1 69.361 69.361 4 2.6025E-09 21765 TMT1-5 83.245 73.126 53.824 95.209 70.437 57.588 85.512 82.84 51 94 73 58 87 80 1 1 1 1 1 1 15348 18094 1812 17881 27722 35822 35822 1 TMLVLALLLAK Unmodified 1184.7567 0.75665218 1329 P55957;P55957-2;P55957-4 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 0 9 0 1 97.296 97.296 3 0.020883 30031 TMT1-8 47.894 23.118 30.727 35.641 35.351 29.35 12.743 46.54 29 36 36 29 15 44 1 1 1 1 1 1 2013.8 18095 1329 17882 27723 35823 35823 1 TMQFEPSTMVYDACR Unmodified 1834.7688 0.76882614 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5 0.816 1 1 1 60.654 60.654 2;3 1.4859E-22 18162 TMT1-4 169.94 160.89 176.34 230.21 283.94 169.89 178.91 289.11 167 232 283 174 188 276 3 3 3 3 3 3 85847 18096 3010 17883 27724;27725;27726 35824;35825;35826 35825 3 TMQFEPSTMVYDACR Oxidation (M) 1850.7637 0.76374076 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 4.5 0.5 1 1 53.822 53.822 3 0.0062332 16091 TMT1-3 41.86 24.371 68.839 86.609 78.808 49.569 78.551 83.039 65 87 80 51 80 80 1 1 1 1 1 1 11487 18097 3010 17883 27727;27728 35827;35828 35827 340;341 2 TMTIINNAIDFIQDNYALK Oxidation (M) 2213.1038 0.10381973 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 1 0 0 8 0 2 87.947 87.947 3;4 0.0017231 28446 TMT1-7 56.327 37.035 70.196 56.024 57.085 43.891 42.439 45.693 66 58 58 44 44 44 2 2 2 2 2 2 5778 18098 1684 17884 27729;27730 35829;35830 35830 259 2 TMTIINNAIDFIQDNYALK Unmodified 2197.1089 0.10890511 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 8.5 0.5 2 2 93.75 93.75 3;4 2.1359E-23 30568 TMT1-7 134.37 117.88 300.43 345.85 249.26 268.52 275.19 277.84 283 348 262 264 284 268 6 6 6 6 6 6 60692 18099 1684 17884 27731;27732;27733;27734 35831;35832;35833;35834;35835;35836 35832 6 TNADVMTALSQGYR Unmodified 1525.7195 0.7194914 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 6 0 1 57.235 57.235 2 7.9412E-05 17018 TMT1-5 96.135 80.549 46.056 150.05 67.183 57.653 92.325 97.569 44 145 73 58 94 94 1 1 1 1 1 1 10768 18100 550 17885 27735 35837 35837 1 TNALNVSQK Unmodified 973.51926 0.51925868 2769 Q9NWV8;Q9NWV8-2 BABAM1 BRISC and BRCA1-A complex member 1 yes no 0 0 0 0 0 7 0 1 40.275 40.275 2 0.014739 9696 TMT1-6 82.417 37.049 38.285 35.258 27.785 28.826 64.606 59.984 36 36 29 29 65 58 1 1 1 1 1 1 2902.4 18101 2769 17886 27736 35838 35838 1 TNAVSEIKR Unmodified 1016.5615 0.56145784 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 1 6 0 1 34.953 34.953 3 0.00064038 8190 TMT1-5 107.55 51.878 597.03 657.65 450.26 476.35 443.29 861.47 562 663 475 468 473 820 1 1 1 1 1 1 38797 18102 2887 17887 27737 35839 35839 1 TNCNVAVINVGAPAAGMNAAVR Unmodified 2169.0783 0.078290456 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 7 0 1 56.911 56.911 3 7.4989E-07 16287 TMT1-6 77.53 67.96 15.787 36.896 20.537 21.867 50.78 45.455 15 36 22 22 51 44 1 1 1 1 1 1 9645.6 18103 1559 17888 27738 35840 35840 1 TNDQMVVVYLASLIR Unmodified 1720.9182 0.91819121 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 9 0 1 89.022 89.022 3 0.025415 27046 TMT1-8 41.422 17.818 23.3 36.39 20.523 21.995 43.995 29.659 22 36 22 22 44 29 1 1 1 1 1 1 3957.1 18104 1251 17889 27739 35841 35841 1 TNEAQAIETAR Unmodified 1202.5891 0.58912916 1377 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 0 2.5 0.5 1 1 35.534 35.534 2 1.323E-07 9309 TMT1-1 153.54 130.46 146.25 184.47 150.06 131.14 164.78 204.23 138 185 155 131 170 196 3 3 3 3 3 3 43475 18105 1377 17890 27740;27741 35842;35843;35844 35843 3 TNEKVELQELNDR Unmodified 1586.79 0.79001381 575 P08670;P17661 VIM;DES Vimentin;Desmin yes no 0 0 0 0 1 3 0.816 1 1 1 44.176 44.176 3 5.6654E-13 12961 TMT1-2 157.38 96.345 4337.5 7633.8 4103 4333.9 4887.1 7265 4101 7514 4414 4273 5101 6946 5 5 5 5 5 5 670060 18106 575 17891 27742;27743;27744 35845;35846;35847;35848;35849 35847 5 TNEPVWEENFTFFIHNPK Unmodified 2248.0589 0.058918448 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 7 0 1 72.192 72.192 3 5.717E-08 22290 TMT1-6 98.035 82.945 38.409 28.049 13.005 30.264 34.982 37.378 36 29 15 29 36 36 1 1 1 1 1 1 7503.8 18107 3 17892 27745 35850 35850 1 TNEQMHQLVAAYK Unmodified 1531.7453 0.74531222 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 7 0 1 47.794 47.794 3 1.3636E-08 12591 TMT1-6 124.42 99.178 160.24 305.76 221.41 234.86 351.59 260.73 152 301 232 233 355 254 2 2 2 2 2 2 56858 18108 555 17893 27746 35851;35852 35851 2 TNFQNHK Unmodified 887.42496 0.42496436 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 7 0 1 27.877 27.877 3 0.034093 4869 TMT1-6 57.177 17.074 38.397 20.461 21.405 21.953 43.447 45.664 36 22 22 22 44 44 1 1 1 1 1 1 1655 18109 1708 17894 27747 35853 35853 1 TNHLVTVEGGWPQFGVGAEICAR Unmodified 2497.2172 0.21722678 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 7 0 1 64.379 64.379 3 0.0028423 19224 TMT1-6 43.75 36.128 30.528 58.831 49.187 51.887 49.144 52.964 29 58 51 51 51 51 1 1 1 1 1 1 8801.2 18110 645 17895 27748 35854 35854 1 TNIIPVLEDAR Unmodified 1239.6823 0.68230126 15 A6NHQ2 FBLL1 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 yes yes 0 0 0 0 0 5 0 1 59.662 59.662 2 1.0428E-05 17804 TMT1-4 125.24 0 115.05 198.25 151.66 201.79 180.66 226.17 109 196 160 196 189 217 2 2 2 2 2 2 29972 18111 15 17896 27749 35855;35856 35856 2 TNISDEESEQATEMLVHNAQNLMQSVK Unmodified 3045.4019 0.4019286 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 6 0 3 80.322 80.322 3;4;5 4.4093E-36 26086 TMT1-5 129.72 105.26 216.67 205.49 199.88 166.82 201.78 327.9 204 210 204 167 211 313 3 3 3 3 3 3 45488 18112 776 17897 27750;27751;27752 35857;35858;35859 35857 3 TNKLPGSPGLSK Unmodified 1197.6717 0.67173657 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 1 9 0 1 43.081 43.081 3 0.002314 9169 TMT1-8 68.277 48.516 61.753 57.004 32.542 60.124 70.737 83.262 58 58 36 58 73 80 1 1 1 1 1 1 4132.6 18113 2194 17898 27753 35860 35860 1 TNLLLQAHLSR Unmodified 1264.7252 0.72516913 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 9 0 1 48.083 48.083 3 0.0062053 11025 TMT1-8 57.328 26.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18114 293 17899 27754 35861 35861 1 TNLLQVCER Unmodified 1131.5706 0.57064232 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.25 2.86 1 1 1 1 47.44 47.44 2 8.8424E-05 12959 TMT1-5 151.22 97.728 868.01 1231.3 1128.3 896.26 1131.5 1518.7 821 1230 1152 901 1171 1455 4 4 4 4 4 4 421390 18115 776 17900 27755;27756;27757;27758 35862;35863;35864;35865;35866 35864 5 TNLNMPHSLPQR Unmodified 1406.7089 0.70886714 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 7 0 1 40.347 40.347 3 1.5401E-05 9710 TMT1-6 86.262 60.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18116 2263 17901 27759 35867 35867 1 TNLPIFK Unmodified 831.48544 0.48543935 223;2921 Q9UMY4-1;Q9UMY4;O60493;O60493-3 SNX12;SNX3 Sorting nexin-12;Sorting nexin-3 no no 0 0 0 0 0 9 0 1 57.83 57.83 2 0.0079542 14869 TMT1-8 138.9 46.989 409.17 736.26 578.87 443.68 610.39 669.09 388 727 596 448 625 644 1 1 1 1 1 1 46858 18117 2921;223 17902 27760 35868 35868 1 TNLYQDDAVTGEAAGLALGLVMLGSK Unmodified 2606.3262 0.32616811 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 8 0 2 95.946 95.946 3;4 1.1973E-07 31286 TMT1-7 67.218 60.265 29.58 37.667 46.085 28.676 47.436 42.352 28 38 46 29 48 41 3 3 3 2 3 3 5000 18118 2465 17903 27761;27762 35869;35870;35871 35869 3 TNNPLPLEQR Unmodified 1180.62 0.62003536 2876 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 0 4 0 1 42.96 42.96 2 0.029557 11494 TMT1-3 70.977 23.154 61.644 49.145 57.547 43.766 47.648 107.37 58 51 58 44 51 102 1 1 1 1 1 1 7503 18119 2876 17904 27763 35872 35872 1 TNQELQEINR Unmodified 1243.6157 0.61567826 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 2 0.816 1 1 1 37.682 37.682 2 8.4013E-29 10060 TMT1-1 210.64 166.52 403.74 680.14 457.34 430.45 536.78 515.55 382 672 480 428 549 498 5 5 5 5 5 5 134150 18120 534 17905 27764;27765;27766 35873;35874;35875;35876;35877 35874 5 TNQIGTVNDR Unmodified 1116.5523 0.55234972 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5 IST1 IST1 homolog yes no 0 0 0 0 0 3 0 1 31.384 31.384 2 6.8147E-05 7875 TMT1-2 143.24 83.888 68.764 93.954 85.27 64.646 70.016 98.206 65 94 87 65 73 94 1 1 1 1 1 1 8683.8 18121 1292 17906 27767 35878 35878 1 TNQYGILFK Acetyl (Protein N-term) 1124.5866 0.58660996 2601 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 1 0 0 0 6 0 1 71.661 71.661 2 0.00046805 22642 TMT1-5 42.109 12.536 46.642 65.339 40.441 67.596 55.237 67.714 44 65 44 65 58 65 1 1 1 1 1 1 11528 18122 2601 17907 27768 35879 35879 1 TNRPPLSLSR Unmodified 1139.6411 0.64110515 1607 Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 1 9 0 1 34.395 34.395 3 0.046384 6222 TMT1-8 43.306 12.693 77.636 71.504 55.8 51.064 71.959 59.775 73 73 58 51 73 58 1 1 1 1 1 1 5567.6 18123 1607 17908 27769 35880 35880 1 TNSKDEQITQVLELLR Unmodified 1886.0109 0.010905622 2210 Q8ND71 GIMAP8 GTPase IMAP family member 8 yes yes 0 0 0 0 1 7 0 1 71.431 71.431 3 1.3935E-07 21978 TMT1-6 84.829 66.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18124 2210 17909 27770 35881 35881 1 TNTGLALR Unmodified 844.47667 0.47666558 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 37.709 37.709 2 0.0069365 9263 TMT1-5 103.8 35.915 183.21 311.01 323.59 238.91 277.6 277.77 174 309 327 241 285 268 1 1 1 1 1 1 23825 18125 471 17910 27771 35882 35882 1 TNVIQSLLAR Unmodified 1113.6506 0.6506072 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 9 0 1 64.567 64.567 2 2.0275E-08 17594 TMT1-8 164.66 106.85 91.829 122.14 152.22 100.03 126.99 158.41 87 123 152 102 131 152 1 1 1 1 1 1 52783 18126 2744 17911 27772 35883 35883 1 TNVLGHLQQGGAPTPFDR Unmodified 1906.965 0.96495848 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 7 0 1 51.868 51.868 3 3.9546E-08 14254 TMT1-6 100.01 65.624 76.707 131.52 161.14 83.222 120.45 127.68 73 131 160 87 123 123 1 1 1 1 1 1 30965 18127 765 17912 27773 35884 35884 1 TNVPDIR Unmodified 813.43447 0.43446642 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 4 0 1 37.48 37.48 2 0.014362 9301 TMT1-3 102 45.88 130.41 104.24 175.95 121.44 133.34 158.23 123 109 174 123 138 152 1 1 1 1 1 1 21649 18128 1552 17913 27774 35885 35885 1 TNYIGHK Unmodified 831.4239 0.42390173 554 P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 32.077 32.077 3 0.0023289 6994 TMT1-5 103.83 62.181 9383.7 11169 10133 8415.8 11255 11715 8854 11251 10375 8446 11514 11291 8 8 8 8 8 8 781480 18129 554 17914 27775;27776;27777;27778;27779 35886;35887;35888;35889;35890;35891;35892;35893;35894 35888 9 TNYNDRYDEIR Unmodified 1457.6535 0.65352033 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 1 2 0 1 34.592 34.592 3 0.027955 8780 TMT1-1 56.205 31.929 61.284 55.699 112.48 40.463 49.156 67.887 58 58 109 44 51 65 1 1 1 1 1 1 7064.6 18130 1438 17915 27780 35895 35895 1 TPADCPVIAIDSFR Unmodified 1560.7606 0.76062794 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 5 0 1 63.258 63.258 2 1.8845E-22 19188 TMT1-4 178.65 144.69 46.289 80.546 86.875 49.235 70.724 98.186 44 80 87 51 73 94 1 1 1 1 1 1 22392 18131 2521 17916 27781 35896 35896 1 TPAFAESVTEGDVR Unmodified 1477.7049 0.7048872 1046 P36957 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 3 0 1 51.136 51.136 3 0.00012693 15625 TMT1-2 83.729 54.401 30.65 51.616 34.751 21.315 35.1 45.902 29 51 36 22 36 44 1 1 1 1 1 1 19016 18132 1046 17917 27782 35897 35897 1 TPALVNAAVTYSKPR Unmodified 1586.878 0.87804096 319 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 1 9 0 1 52.424 52.424 3 3.7526E-11 12804 TMT1-8 116.99 96.044 129.53 234.56 212.35 197.58 212.24 195.42 123 232 218 196 218 189 2 2 2 2 2 2 20307 18133 319 17918 27783 35898;35899 35899 2 TPAQFDADELR Unmodified 1261.5939 0.59388018 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 2.5 0.5 1 1 49.529 49.529 2 1.956E-16 15043 TMT1-2 179.95 157.17 681.38 1309.8 689.95 887.51 777.66 930.81 645 1285 750 863 813 894 4 4 4 4 4 4 287140 18134 461 17919 27784;27785 35900;35901;35902;35903 35903 4 TPAQYDASELK Unmodified 1221.5877 0.58773217 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 3.67 1.89 1 2 46.732 46.732 2;3 3.8796E-07 12644 TMT1-4 150.46 127.72 448.61 793.28 573.37 437.32 559.44 760.08 425 783 594 441 579 728 3 3 3 3 3 3 68878 18135 534 17920 27786;27787;27788 35904;35905;35906 35906 3 TPASPVVHIR Unmodified 1075.6138 0.61382777 713 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 0 0 0 9 0 1 35.772 35.772 3 0.020201 6705 TMT1-8 52.725 31.219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18136 713 17921 27789 35907 35907 1 TPAVEGLTEAEEEELR Unmodified 1771.8476 0.84758827 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 2 0 1 59.364 59.364 3 4.6181E-09 18571 TMT1-1 113.67 95.338 46.553 65.091 55.659 66.388 71.255 59.795 44 65 58 65 73 58 2 2 2 2 2 2 10649 18137 172 17922 27790 35908;35909 35908 2 TPAVEGLTEAEEEELRAELTK Unmodified 2314.154 0.15400062 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 1 3 0 2 69.415 69.415 3;4 0.00047141 22850 TMT1-2 58.339 43.249 93.519 78.446 85.687 97.675 55.967 98.607 88 81 88 95 58 94 3 3 3 3 2 3 15136 18138 172 17923 27791;27792 35910;35911;35912 35912 3 TPCEEILVK Unmodified 1087.5583 0.5583463 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.67 0.471 1 2 51.951 51.951 2;3 0.00024776 14719 TMT1-4 143.73 115.34 8123.6 9419.4 9699.1 7524.7 9567.5 11416 7669 9520 9834 7578 9852 10965 7 7 7 7 7 7 1388700 18139 831 17924 27793;27794;27795 35913;35914;35915;35916;35917;35918;35919 35917 7 TPCTVSCNIPVVSGK Unmodified 1617.7855 0.78546248 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 6.5 2.5 1 2 3 53.143 53.143 2;3;4 2.5842E-18 14808 TMT1-7 157.56 125.3 2297.9 2847.9 2530.3 2060.5 2955 3180.8 2169 2862 2592 2074 3020 3063 7 7 7 7 7 7 957120 18140 438 17925 27796;27797;27798;27799;27800;27801 35920;35921;35922;35923;35924;35925;35926 35925 7 TPDFHDK Unmodified 858.38718 0.38718187 873 P24311 COX7B Cytochrome c oxidase subunit 7B, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 35.458 35.458 3 0.018187 8232 TMT1-4 69.825 39.64 519.61 712.31 611.2 490.66 567.15 586.11 491 712 627 492 583 565 2 2 2 2 2 2 46284 18141 873 17926 27802;27803 35927;35928 35928 2 TPDGNKSPAPK Unmodified 1110.5669 0.56693715 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 6 0 1 31.876 31.876 3 0.045384 6963 TMT1-5 51.286 29.088 139.38 119.84 97.492 111.77 82.764 90.38 131 123 102 109 87 87 1 1 1 1 1 1 6463.6 18142 1597 17927 27804 35929 35929 1 TPDSVIIDSLGQEER Unmodified 1657.8159 0.81589421 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 3 0 1 62.313 62.313 3 5.2881E-05 20146 TMT1-2 86.497 71.466 46.558 42.44 73.959 50.42 48.661 68.967 44 44 73 51 51 66 2 2 2 2 2 2 7787.3 18143 2968 17928 27805 35930;35931 35931 2 TPEALLQVR Unmodified 1025.5869 0.58694431 711 P14770 GP9 Platelet glycoprotein IX yes yes 0 0 0 0 0 6 0 1 52.4 52.4 2 4.9811E-05 15032 TMT1-5 153.04 81.158 510.31 800.83 1018.6 603.23 961.91 910.63 485 801 1013 624 976 880 2 2 2 2 2 2 334130 18144 711 17929 27806 35932;35933 35932 2 TPEASPEPK Unmodified 954.46583 0.46582612 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 3 0 1 33.926 33.926 3 0.005831 8901 TMT1-2 73.985 58.323 77.349 93.369 85.597 57.132 61.692 106.97 73 94 87 58 65 102 1 1 1 1 1 1 4977.8 18145 2465 17930 27807 35934 35934 1 TPEAVQK Unmodified 771.41267 0.41266834 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 5 0 1 34.392 34.392 2 0.033862 7804 TMT1-4 88.942 29.737 85.079 47.055 88.036 63.88 101.99 51.456 80 51 87 65 102 51 1 1 1 1 1 1 6476.9 18146 1176 17931 27808 35935 35935 1 TPEEIRR Unmodified 899.48248 0.48247924 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 1 2.5 0.5 1 1 25.041 25.041 3 0.0071059 5308 TMT1-2 95.531 31.965 123.23 160.72 72.688 80.994 112.38 152.43 116 160 80 80 116 146 2 2 2 2 2 2 11063 18147 598 17932 27809;27810 35936;35937 35937 2 TPELNLDQFHDK Unmodified 1455.6994 0.69940789 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 0 5 0 1 53.409 53.409 3 6.5371E-14 15333 TMT1-4 167.59 154.45 652.29 840.48 747 655.01 870.82 783.18 616 843 767 655 887 758 1 1 1 1 1 1 120450 18148 920 17933 27811 35938 35938 1 TPELNLDQFHDKTPYTIMFGPDK Unmodified 2706.3 0.29995335 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 8 0 1 70.212 70.212 4 0.002989 21591 TMT1-7 45.011 30.948 23.185 52.259 26.423 38.23 33.81 60.863 22 51 29 37 36 58 1 1 1 1 1 1 4716.9 18149 920 17934 27812 35939 35939 1 TPELTWER Unmodified 1030.5084 0.50835964 210 O43865-2;O43865;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 0 0 0 0 0 5 0 1 49.391 49.391 2 0.020082 13749 TMT1-4 88.921 49.958 91.486 215.08 131.12 108.4 155.36 204.5 87 210 138 109 160 196 1 1 1 1 1 1 21465 18150 210 17935 27813 35940 35940 1 TPETAEFLGEDLLQVEQR Unmodified 2074.0219 0.021864239 3003 Q9Y3L3-2;Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 yes no 0 0 0 0 0 3 0 1 74.854 74.854 3 6.9443E-27 25029 TMT1-2 158.17 142.23 7.4331 22.647 15.518 29.962 43.079 45.675 7 22 15 29 44 44 1 2 1 2 2 2 12258 18151 3003 17936 27814 35941;35942 35942 2 TPEVTCVVVDVSHEDPEVK Unmodified 2138.0201 0.02014968 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region yes no 0 0 0 0 0 3 0.707 1 2 1 59.335 59.335 3;4 9.5892E-31 18891 TMT1-2 148.44 139.78 461.81 661.43 451.27 366.81 569.01 667.07 436 658 471 370 582 641 6 6 6 6 6 6 147200 18152 420 17937 27815;27816;27817;27818 35943;35944;35945;35946;35947;35948 35944 6 TPEYLHIDQR Unmodified 1270.6306 0.63060004 47 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 0 4 0 1 41.515 41.515 3 0.043335 10958 TMT1-3 45.879 29.742 68.992 63.288 72.953 42.378 72.615 52.294 65 65 73 44 73 51 1 1 1 1 1 1 8202.9 18153 47 17938 27819 35949 35949 1 TPFGAYGGLLK Unmodified 1122.6073 0.6073454 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 9 0 1 65.229 65.229 2 4.7183E-07 17786 TMT1-8 133.13 66.513 84.573 147.1 88.221 95.057 129.05 105.05 80 145 94 94 131 102 1 1 1 1 1 1 14816 18154 1102 17939 27820 35950 35950 1 TPFHTSLHQGTSK Unmodified 1439.7157 0.71572665 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 8.5 0.5 1 1 33.106 33.106 4 1.4379E-06 6866 TMT1-7 114.24 88.257 177.35 162.86 171.83 129.51 182.48 269.82 167 167 174 131 189 258 2 2 2 2 2 2 17088 18155 1623 17940 27821;27822 35951;35952 35951 2 TPFLLSGTSYK Unmodified 1212.639 0.63903946 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 9 0 1 62.27 62.27 2 1.628E-11 16618 TMT1-8 159.93 107.35 191.78 244.38 201.24 159.4 185.29 208.98 181 245 207 160 191 201 1 1 1 1 1 1 34339 18156 1312 17941 27823 35953 35953 1 TPFLLVGTQIDLR Unmodified 1471.8399 0.83986454 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 0 9 0 1 75.844 75.844 2 2.0906E-19 21927 TMT1-8 171.74 109.47 146.41 165.5 138.61 170.82 183.66 180.24 138 167 145 167 189 174 2 2 2 2 2 2 80837 18157 1363 17942 27824 35954;35955 35954 2 TPFLLVGTQIDLRDDPSTIEK Unmodified 2357.2478 0.24784143 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 1 7 0 2 72.965 72.965 3;4 3.8115E-06 22644 TMT1-6 77.221 60.505 176.88 231.72 191.55 128.61 167.77 242.52 167 232 196 131 174 232 2 2 2 2 2 2 84326 18158 1363 17943 27825;27826 35956;35957 35957 2 TPGAVNACHLSCSALLQDNIADAVACAK Unmodified 2926.3735 0.37354578 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 7.2 0.748 1 2 2 64.786 64.786 3;4;5 3.9172E-69 19384 TMT1-7 182.41 162.69 446.27 696.63 508.56 468.06 525.16 864.46 422 691 530 465 551 825 6 6 6 6 6 6 157770 18159 1397 17944 27827;27828;27829;27830;27831 35958;35959;35960;35961;35962;35963 35962 6 TPGPGAQSALR Unmodified 1053.5567 0.55670682 1423 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 0 5.5 0.5 1 1 33.2 33.2 2 1.7618E-07 7529 TMT1-5 113.46 57.368 61.501 80.047 55.379 50.833 85.566 90.3 58 80 58 51 87 87 1 1 1 1 1 1 13097 18160 1423 17945 27832;27833 35964;35965 35965 2 TPHTATLR Unmodified 895.48756 0.48756462 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 6 0 1 23.834 23.834 3 0.014215 4079 TMT1-5 68.016 24.95 42.573 31.716 31.415 48.781 38.172 41.551 40 33 33 47 40 40 1 1 1 1 1 1 1522.1 18161 1084 17946 27834 35966 35966 1 TPIESLFIEATEK Unmodified 1476.7712 0.77117585 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 0 5.5 0.5 1 1 79.578 79.578 3 0.0052144 25764 TMT1-5 62.732 39.497 92.245 100.63 100.62 72.762 54.743 75.19 87 102 102 73 58 72 2 2 2 2 2 2 6479.5 18162 1707 17947 27835;27836 35967;35968 35968 2 TPIGSFLGSLSLLPATK Unmodified 1700.9713 0.97127264 878 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 87.26 87.26 3 2.3267E-26 26323 TMT1-8 136.39 106.55 115.28 160.01 146.67 170.9 153.55 173.64 109 160 152 167 160 167 2 2 2 2 2 2 29332 18163 878 17948 27837 35969;35970 35969 2 TPITVVK Unmodified 756.47454 0.47454032 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 7.5 0.5 1 1 46.72 46.72 2 0.014822 12252 TMT1-7 101.64 34.65 3076.7 4473.9 3897.2 3006.4 3947.1 4733.4 2910 4461 3988 3031 4061 4546 2 2 2 2 2 2 454760 + 18164 506 17949 27838;27839 35971;35972 35972 2 TPKDESANQEEPEAR Unmodified 1699.7649 0.76492127 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 2 0.816 1 1 1 29.877 29.877 3 9.4299E-15 7104 TMT1-1 134.37 128.95 458.56 530.79 386.67 317.3 326.34 642.01 432 534 402 317 347 611 5 5 5 5 5 5 87268 18165 1225 17950 27840;27841;27842 35973;35974;35975;35976;35977 35975 5 TPLAVELEVLDGHDPDPGR Unmodified 2029.0116 0.011633904 1195 P49753;Q86TX2 ACOT2;ACOT1 Acyl-coenzyme A thioesterase 2, mitochondrial;Acyl-coenzyme A thioesterase 1 yes no 0 0 0 0 0 3 0 1 67.396 67.396 3 2.8636E-08 22092 TMT1-2 72.359 56.937 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18166 1195 17951 27843 35978 35978 1 TPLFGVDFLQLPR Unmodified 1501.8293 0.82929985 2816 Q9P107-2;Q9P107 GMIP GEM-interacting protein yes no 0 0 0 0 0 9 0 1 83.335 83.335 3 2.3928E-06 24854 TMT1-8 102.97 79.119 30.625 35.357 52.735 3.8327 35.904 45.879 29 36 51 7 36 44 1 1 1 1 1 1 8416.1 18167 2816 17952 27844 35979 35979 1 TPLHAAAFADHVECLQLLLR Unmodified 2274.1943 0.19430649 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-4 ANKRD44 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B yes no 0 0 0 0 0 8 0 1 65.86 65.86 4 0.0010608 19857 TMT1-7 52.866 30.856 54.064 64.579 55.98 59.011 55.632 67.703 51 65 58 58 58 65 1 1 1 1 1 1 5909.1 18168 2192 17953 27845 35980 35980 1 TPLHEIALSIK Unmodified 1220.7129 0.71287311 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 8 0 1 55.104 55.104 3 0.00085802 15593 TMT1-7 88.187 56.124 193.32 231.57 134.08 178.22 211.01 257.28 182 232 145 174 218 247 2 2 2 2 2 2 23546 18169 1619 17954 27846 35981;35982 35981 2 TPLIADVYYIVGGTSPR Unmodified 1820.9672 0.96724989 1563 Q02083;Q02083-2 NAAA N-acylethanolamine-hydrolyzing acid amidase;N-acylethanolamine-hydrolyzing acid amidase subunit alpha;N-acylethanolamine-hydrolyzing acid amidase subunit beta yes no 0 0 0 0 0 8 0 1 82.864 82.864 3 1.8964E-05 26538 TMT1-7 79.393 62.73 53.837 111.43 54.519 28.734 42.879 53.142 51 109 58 30 44 51 2 2 2 2 2 2 7669.7 18170 1563 17955 27847 35983;35984 35984 2 TPLLLMLGQEDR Unmodified 1384.7384 0.73843593 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 8 0 1 73.985 73.985 2 6.8588E-07 23016 TMT1-7 118.9 79.283 38.137 58.591 32.883 53.013 40.956 76.649 36 58 36 51 44 73 1 1 1 1 1 1 7547.3 18171 692 17956 27848 35985 35985 1 TPLTNRVWEDR Phospho (STY) 1465.6715 0.67149238 3044 Q9Y618-2;Q9Y618-5;Q9Y618-4;Q9Y618 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 0 1 1 9 0 1 82.574 82.574 2 0.021145 24581 TMT1-8 49.418 7.9698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18172 3044 17957 27849 35986 35986 22 1 TPLVSVLLEGPPHSGK Unmodified 1629.909 0.90900673 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 8 0 1 64.005 64.005 3 1.376E-08 19063 TMT1-7 107.13 91.741 84.807 116.45 74.842 96.599 89.471 128.56 80 116 80 94 94 123 1 1 1 1 1 1 15830 18173 1129 17958 27850 35987 35987 1 TPMGIVLDALEQQEEGINR Unmodified 2112.0521 0.05211851 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 0 0 3.8 1.72 1 1 1 1 1 86.053 86.053 3 1.6883E-71 28004 TMT1-4 217.88 184.04 103.56 174.29 127.34 174 158.95 194.81 98 171 135 168 166 187 7 6 8 7 8 8 94785 18174 310 17959 27851;27852;27853;27854;27855 35988;35989;35990;35991;35992;35993;35994;35995 35992 8 TPMGIVLDALEQQEEGINR Oxidation (M) 2128.047 0.047033132 310 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 1 0 0 4 0 1 72.942 72.942 3 0.00090866 23241 TMT1-3 61.684 56.255 15.861 21.992 20.73 37.594 27.572 30.127 15 22 22 36 29 29 1 1 1 1 1 1 5265.7 18175 310 17959 27856 35996 35996 31 1 TPMGLLLEALGQEQEAGS Unmodified 1842.9033 0.90332901 240 O60831 PRAF2 PRA1 family protein 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 102.1 102.1 3 0.00032593 33745 TMT1-5 65.716 53.923 7.3414 29.979 22.846 28.883 19.129 13.512 7 29 24 28 20 13 2 3 3 3 3 2 7110.5 18176 240 17960 27857;27858 35997;35998;35999 35998 3 TPPPELLQTLTAVGGIGQLTAAK Unmodified 2275.2787 0.27874763 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 9 0 1 86.169 86.169 3 1.5075E-10 25965 TMT1-8 78.837 57.792 23.37 21.474 21.414 22.075 36.919 22.399 22 22 22 22 37 22 1 1 1 1 1 1 4268.5 18177 1105 17961 27859 36000 36000 1 TPSAAYLWVGTGASEAEK Unmodified 1836.8894 0.8893935 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 5.67 2.21 1 3 1 1 63.686 63.686 2;3;4 2.52E-42 19437 TMT1-5 194.12 150.5 1788.4 2043.4 1919.5 1490.2 2085.5 2430.7 1687 2064 1957 1504 2139 2336 8 8 8 8 8 8 769310 + 18178 506 17962 27860;27861;27862;27863;27864;27865 36001;36002;36003;36004;36005;36006;36007;36008;36009 36005 9 TPSALAILENANVLAR Unmodified 1651.9257 0.92571943 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 0 8 0 1 76.391 76.391 3 6.533E-12 23962 TMT1-7 125.47 87.943 23.253 28.702 35.087 45.479 27.723 15.199 22 29 36 44 29 15 1 1 1 1 1 1 17967 18179 609 17963 27866 36010 36010 1 TPSFGISAPQVSIPDVNVNLK Unmodified 2182.1634 0.16338352 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 2 75.964 75.964 3;4 1.3239E-07 23822 TMT1-7 87.356 64.481 84.779 108.82 86.089 48.716 100.82 105.86 80 109 88 51 102 102 2 2 2 2 2 2 25544 18180 1632 17964 27867;27868 36011;36012 36012 2 TPSNELYKPLR Unmodified 1316.7089 0.70885036 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 7 0 1 43.47 43.47 3 3.4352E-06 10927 TMT1-6 125.54 96.479 276.15 411.43 306.75 349.59 315.34 462.17 261 409 322 342 332 442 1 1 1 1 1 1 33568 18181 2267 17965 27869 36013 36013 1 TPSNTPSAEADWSPGLELHPDYK Unmodified 2511.1554 0.15539761 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 5 0 1 58.019 58.019 4 1.0143E-06 17129 TMT1-4 74.876 64.897 122.89 185.7 107.11 149.01 164.53 157.34 116 184 116 145 169 152 1 1 1 1 1 1 27404 18182 3006 17966 27870 36014 36014 1 TPSQDSDYINANFIK Unmodified 1711.8053 0.80532952 1592 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes yes 0 0 0 0 0 5 0 1 60.268 60.268 2 1.9629E-05 18045 TMT1-4 100.55 72.888 30.811 28.319 27.495 45.534 48.886 68.961 29 29 29 44 51 66 1 1 1 1 1 1 7269.8 18183 1592 17967 27871 36015 36015 1 TPSSTGPSPVFDIK Unmodified 1431.7246 0.72456001 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 7 0 1 57.091 57.091 3 0.00038392 16325 TMT1-6 58.071 22.868 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18184 1658 17968 27872 36016 36016 1 TPTEALASFDYIVR Unmodified 1581.8039 0.80387296 2658 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 0 0 0 0 0 6 0 1 72.268 72.268 3 0.00084479 22926 TMT1-5 73.156 67.497 23.335 28.932 20.971 21.979 43.446 45.664 22 29 22 22 44 44 1 1 1 1 1 1 6351.6 18185 2658 17969 27873 36017 36017 1 TPTLEILK Unmodified 913.54843 0.54843354 532 P07332-3;P07332;P07332-2;P07332-4 FES Tyrosine-protein kinase Fes/Fps yes no 0 0 0 0 0 7 0 1 59.198 59.198 2 0.0071715 17159 TMT1-6 69.954 0.60926 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18186 532 17970 27874 36018 36018 1 TPTQLEGATR Unmodified 1072.5513 0.55128709 324 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 0 0 4 0 1 35.692 35.692 2 0.024974 8634 TMT1-3 73.327 50.436 46.917 58.548 0 38.55 42.428 53.155 44 58 0 36 44 51 1 1 0 1 1 1 8122.6 18187 324 17971 27875 36019 36019 1 TPTVEYICTQQNILFMLLK Unmodified 2311.1956 0.19561162 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 9 0 1 93.217 93.217 3 2.6923E-05 28617 TMT1-8 61.167 35.577 15.827 37.009 13.638 6.5588 14.854 15.566 15 36 15 7 15 15 1 1 1 1 1 1 4237.1 18188 2985 17972 27876 36020 36020 1 TPVCHQCHK Unmodified 1165.5121 0.51208159 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6 0 1 22.379 22.379 4 0.0010847 3799 TMT1-5 93.551 72.3 22.115 42.626 34.151 23.568 33.416 31.026 21 42 35 24 34 30 2 2 2 2 2 2 2256.5 18189 2718 17973 27877 36021;36022 36021 2 TPVDGQYVWFNIGSVDTFER Unmodified 2329.1015 0.10151154 3020 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 0 6 0 1 81.125 81.125 3 0.00055826 26388 TMT1-5 44.953 36.766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18190 3020 17974 27878 36023 36023 1 TPVDVILASVG Unmodified 1069.6019 0.60192568 2838 Q9UBF2 COPG2 Coatomer subunit gamma-2 yes yes 0 0 0 0 0 7 0 1 88.757 88.757 2 0.0062258 28620 TMT1-6 84.568 46.922 7.3634 22.82 5.4635 15.808 13.916 30.517 7 22 7 15 15 29 1 1 1 1 1 1 9201.3 18191 2838 17975 27879 36024 36024 1 TPVEPEVAIHR Unmodified 1246.667 0.66698555 1359 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 0 3.5 0.5 1 1 39.294 39.294 3 5.7452E-08 9891 TMT1-3 109.16 85.067 61.527 63.931 64.644 34.566 49.427 67.88 58 65 65 36 51 65 1 1 1 1 1 1 30552 18192 1359 17976 27880;27881 36025;36026 36026 2 TPVEVPVGGFK Unmodified 1128.6179 0.61791009 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6.5 0.5 1 1 57.821 57.821 2 0.00014517 16625 TMT1-6 111.06 65.06 200.55 238.9 175.49 136.6 200.94 179.75 189 240 182 138 204 174 2 2 2 2 2 2 24904 18193 1833 17977 27882;27883 36027;36028 36028 2 TPVGSCFLAQPESGR Unmodified 1604.7617 0.76169057 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 4.67 2.62 1 1 1 51.703 51.703 2;3 3.3836E-17 14744 TMT1-5 144.16 132.99 320.12 509.99 407.18 386.46 419.59 422.95 303 506 422 383 432 408 4 4 4 4 4 4 273830 18194 565 17978 27884;27885;27886 36029;36030;36031;36032 36031 4 TPVGSCFLAQPESGRR Unmodified 1760.8628 0.8628016 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 8 0.816 1 1 1 43.759 43.759 3 1.0271E-19 11090 TMT1-6 156 141.75 216.48 244.91 197.51 166.93 203.68 272.41 204 247 204 167 211 261 3 3 3 3 3 3 95689 18195 565 17979 27887;27888;27889 36033;36034;36035;36036 36033 4 TPVIDADKPVSSQLR Unmodified 1624.8784 0.87843489 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 6 0 1 46.864 46.864 3 0.0012398 12907 TMT1-5 56.851 39.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18196 1763 17980 27890 36037 36037 1 TPVIVTLK Unmodified 869.5586 0.5586043 3017 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 0 9 0 1 56.454 56.454 2 0.0099658 14326 TMT1-8 90.709 37.542 99.454 176.98 86.665 88.073 98.496 120.85 94 174 94 87 102 116 1 1 1 1 1 1 10466 18197 3017 17981 27891 36038 36038 1 TPVLFDIYEIK Unmodified 1336.7279 0.72785447 1234 P50995-2;P50995 ANXA11 Annexin A11 yes no 0 0 0 0 0 7 0 1 78.054 78.054 3 5.0172E-05 24488 TMT1-6 105.46 68.936 222.18 265.09 304.07 200.04 255.83 232.55 210 268 305 204 261 225 2 2 2 2 2 2 58133 18198 1234 17982 27892 36039;36040 36039 2 TPVPSDIDISR Unmodified 1198.6194 0.61936665 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 49.401 49.401 2 2.2716E-11 14042 TMT1-3 138.22 87.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18199 657 17983 27893 36041 36041 1 TPVSCFNIQMCVGATGHNIPQK Unmodified 2458.1556 0.1555545 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 8.33 0.471 2 1 58.26 58.26 3;4 2.739E-14 15005 TMT1-8 87.156 64.281 331.45 419.18 383.84 326.99 401.12 522.62 313 421 393 327 415 501 4 4 4 4 4 4 94618 18200 565 17984 27894;27895;27896 36042;36043;36044;36045 36044 4 TPVTDPATGAVK Unmodified 1155.6136 0.61355299 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 43.367 43.367 2 1.4067E-07 11369 TMT1-4 128.01 48.109 84.608 147.2 82.347 56.769 91.303 128.51 80 145 87 58 94 123 1 1 1 1 1 1 11651 18201 1194 17985 27897 36046 36046 1 TPVVQEFESVELSCIITDSQTSDPR Unmodified 2836.3437 0.34366866 2564 Q9BX67-2;Q9BX67 JAM3 Junctional adhesion molecule C yes no 0 0 0 0 0 4 0 1 81.116 81.116 4 0.012707 26406 TMT1-3 36.923 29.301 39.107 50.677 56.838 60.173 49.276 38.036 37 51 58 59 51 37 2 2 2 2 2 2 10282 18202 2564 17986 27898 36047;36048 36047 2 TPYTDVNIVTIR Unmodified 1390.7456 0.7456298 1213 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 57.921 57.921 2 0.0032347 17276 TMT1-5 62.528 26.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18203 1213 17987 27899 36049 36049 1 TQADLDSLVR Unmodified 1116.5775 0.57750184 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 4 0 2 51.207 51.207 2 6.6806E-08 14712 TMT1-3 167.1 73.538 107.51 202.98 153.89 146.13 169.09 180.66 102 200 160 145 174 174 1 1 1 1 1 1 43323 18204 2098 17988 27900;27901 36050;36051 36050 2 TQAFEADNLK Unmodified 1135.551 0.55095274 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 5 0 1 48.475 48.475 3 5.7696E-05 13403 TMT1-4 90.306 43.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18205 1708 17989 27902 36052 36052 1 TQASQVQGLGSLEEAVEALDPPGDK Unmodified 2538.2449 0.2449409 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 4 0 1 80.845 80.845 4 1.4163E-05 26348 TMT1-3 62.1 49.298 54.099 33.377 76.542 28.084 65.943 52.484 51 36 74 29 66 51 2 2 2 1 2 2 4280.6 18206 1530 17990 27903 36053;36054 36053 2 TQAVEYFGEWILNPTNYAFQR Unmodified 2546.223 0.22302366 2285 Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 MADD MAP kinase-activating death domain protein yes no 0 0 0 0 0 9 0 1 90.717 90.717 3 0.00929 27726 TMT1-8 41.482 31.921 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18207 2285 17991 27904 36055 36055 1 TQAYQDQKPGTSGLR Unmodified 1648.8169 0.81689726 1043 P36871 PGM1 Phosphoglucomutase-1 yes yes 0 0 0 0 1 6 0 1 35.735 35.735 3 2.2167E-07 8489 TMT1-5 106.35 88.726 298.68 269.39 247.01 154.97 275.99 315.12 281 276 251 160 281 303 1 1 1 1 1 1 31553 18208 1043 17992 27905 36056 36056 1 TQCALAASK Unmodified 948.46987 0.46986564 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 6 0 1 36.977 36.977 2 0.00031528 8984 TMT1-5 94.66 53.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18209 2444 17993 27906 36057 36057 1 TQDECILHFLR Unmodified 1430.6976 0.69763375 2237 Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 yes no 0 0 0 0 0 6 0 1 56.803 56.803 3 0.0082526 16842 TMT1-5 63.76 41.562 84.729 101.12 101.08 62.57 130.29 112.48 80 102 102 65 131 109 1 1 1 1 1 1 9164 18210 2237 17994 27907 36058 36058 1 TQDPNTIFR Unmodified 1090.5407 0.5407224 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 0 1 43.965 43.965 2 0.0044814 11623 TMT1-4 99.34 54.367 184.04 290.65 201.86 229.86 214.43 210.28 174 288 213 225 222 203 1 1 1 1 1 1 20204 18211 1786 17995 27908 36059 36059 1 TQDQISNIK Unmodified 1045.5404 0.54038805 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 5 0 2 41.305 41.305 2;3 1.7777E-20 10537 TMT1-4 202.44 92.033 367.98 820.84 395.5 443 472.13 706.08 349 801 431 435 494 675 2 2 2 2 2 2 138240 18212 1801 17996 27909;27910 36060;36061 36060 2 TQEEIVAK Unmodified 916.48656 0.48656157 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3 0.816 1 1 1 40.176 40.176 2 0.0057292 10273 TMT1-3 114.84 51.362 523.58 1091.4 705.21 711.19 864.08 934.74 497 1070 744 704 888 900 3 3 3 3 3 3 69783 18213 686 17997 27911;27912;27913 36062;36063;36064 36064 3 TQEFPQILTLIGR Unmodified 1514.8457 0.84567819 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 8 0 2 77.794 77.794 2;3 0.0024647 24452 TMT1-7 67.136 42.014 85.154 71.009 55.119 66.169 84.567 98.857 80 73 58 65 87 95 2 2 2 2 2 2 40931 18214 2791 17998 27914;27915 36065;36066 36065 2 TQEQLALEMAELTAR Unmodified 1702.856 0.85598488 894 P26038 MSN Moesin yes yes 0 0 0 0 0 4 0.707 1 2 1 69.814 69.814 2;3 6.5732E-22 21711 TMT1-4 171.36 148.4 364.61 318.23 306.11 261.07 317.06 408.82 343 327 313 261 328 392 4 4 4 4 4 4 195040 18215 894 17999 27916;27917;27918;27919 36067;36068;36069;36070 36070 4 TQETLSQAGQK Unmodified 1189.5939 0.59388018 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 5 0 1 36.355 36.355 3 2.6308E-05 8608 TMT1-4 111.52 70.757 199.91 313.75 219.55 212.78 311.11 341.84 189 311 230 212 318 329 1 1 1 1 1 1 18398 18216 172 18000 27920 36071 36071 1 TQFLPPNLLALFAPR Acetyl (Protein N-term) 1738.977 0.97702672 572 P08621-2;P08621;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 1 0 0 0 9 0 1 111.42 111.42 2 5.6003E-06 34494 TMT1-8 79.201 58.364 4.2481 8.256 7.3806 3.8615 7.938 7.3549 4 8 7 4 8 7 1 2 1 1 2 1 6263.5 18217 572 18001 27921 36072;36073;36074 36073 3 TQFNSLQQLVAYYSK Unmodified 1788.9046 0.90464964 673 P12931;P12931-2 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 0 9 0 1 78.42 78.42 3 4.3907E-23 22986 TMT1-8 155.26 110.45 176.55 215.67 261.66 179.34 212.27 218.87 167 218 262 182 218 211 2 2 2 2 2 2 48595 18218 673 18002 27922 36075;36076 36076 2 TQFTCECSIGFR Unmodified 1504.6439 0.64388362 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 6 0 1 51.739 51.739 2 4.9933E-05 14860 TMT1-5 110.31 97.539 54.346 42.696 27.244 29.134 49.933 60.403 51 44 29 29 51 58 1 1 1 1 1 1 10096 18219 704 18003 27923 36077 36077 1 TQFVSPWK Unmodified 991.51272 0.51271674 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 56.811 56.811 2 0.022353 14484 TMT1-8 76.465 47.378 46.197 119.14 69.682 43.16 41.409 76.636 44 116 73 44 44 73 1 1 1 1 1 1 5869.5 18220 51 18004 27924 36078 36078 1 TQGFLALFSGDTGEIK Unmodified 1682.8516 0.85155143 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 0 8 0 2 79.034 79.034 3;4 1.4405E-08 24989 TMT1-7 106.67 80.125 153.77 195.85 138.85 123.76 185.84 149.27 145 196 145 124 188 145 2 2 2 2 2 2 24231 18221 2949 18005 27925;27926 36079;36080 36079 2 TQHEILR Unmodified 895.48756 0.48756462 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 4 0 1 25.291 25.291 3 0.013963 4508 TMT1-3 75.189 19.659 46.659 50.276 50.328 35.967 78.37 106.5 44 51 51 37 80 102 2 2 2 2 2 2 4044.2 18222 1174 18006 27927 36081;36082 36081 2 TQHIGNQEENK Unmodified 1296.6058 0.60584185 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 3 0.816 1 1 1 26.171 26.171 3 4.2864E-08 4813 TMT1-3 152.47 104.86 168.28 260.31 170.92 189.7 181.08 199.5 159 258 181 186 188 192 4 4 4 4 4 4 33323 18223 570 18007 27928;27929;27930 36083;36084;36085;36086 36085 4 TQHIQQPR Unmodified 1006.5308 0.53082642 1240 P51397 DAP Death-associated protein 1 yes yes 0 0 0 0 0 5 0 1 20.83 20.83 3 0.0020352 3575 TMT1-4 99.136 64.311 5.2663 13.389 5.2476 9.3042 11.697 12.458 5 13 6 9 12 12 2 2 2 2 2 2 1262.3 18224 1240 18008 27931 36087;36088 36087 2 TQIAICPNNHEVHIYEK Unmodified 2065.0051 0.005108738 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 5.5 0.5 1 1 45.406 45.406 3;4 7.7807E-10 12192 TMT1-4 105.77 96.831 184.01 287.33 209.21 190.71 180.84 235.76 174 285 218 189 189 226 2 2 2 2 2 2 51950 18225 128 18009 27932;27933 36089;36090 36089 2 TQIDHYVGIAR Unmodified 1271.6622 0.66223452 341 O95197-3;O95197-4;O95197-7;O95197-2;O95197 RTN3 Reticulon-3 yes no 0 0 0 0 0 5.5 0.5 1 1 42.966 42.966 3 3.4008E-09 11298 TMT1-4 160.62 97.406 453.69 513.3 497.84 396.27 540.54 603.92 428 519 507 399 554 581 3 3 3 3 3 3 138310 18226 341 18010 27934;27935 36091;36092;36093 36092 3 TQILAASYELHK Unmodified 1372.7351 0.73506511 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 52.07 52.07 3 1.6997E-05 14350 TMT1-6 105.19 68.08 184.07 224.9 252.39 204.15 258.97 287.89 174 227 255 205 266 277 1 1 1 1 1 1 39571 18227 1546 18011 27936 36094 36094 1 TQILSPNTQDVLIFK Unmodified 1715.9458 0.94578617 1550 Q01415-2;Q01415 GALK2 N-acetylgalactosamine kinase yes no 0 0 0 0 0 8 0 1 71.712 71.712 3 0.00015335 22160 TMT1-7 61.226 34.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18228 1550 18012 27937 36095 36095 1 TQIPTQR Unmodified 842.46102 0.46101552 890 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 0 5 0 1 30.071 30.071 2 0.009912 6127 TMT1-4 110.31 47.008 77.17 101.51 108.69 62.116 130.31 112.48 73 102 109 65 131 109 1 1 1 1 1 1 12028 18229 890 18013 27938 36096 36096 1 TQIQSVEPYTK Unmodified 1292.6612 0.66123147 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 5 0 1 46.887 46.887 3 0.01176 12760 TMT1-4 60.157 35.866 130.48 159.5 116.2 149.37 116.6 151.24 123 160 123 145 123 145 1 1 1 1 1 1 17750 18230 1073 18014 27939 36097 36097 1 TQKQELEDTK Unmodified 1218.6092 0.6091959 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 1 4 0 1 35.636 35.636 3 0.00049235 8583 TMT1-3 102.62 70.097 185.68 381.93 208.64 173.06 249.2 370.25 176 374 222 174 258 354 1 1 1 1 1 1 23414 18231 2309 18015 27940 36098 36098 1 TQLEELEDELQATEDAK Unmodified 1960.9113 0.91131074 1019;1020;1029 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 no no 0 0 0 0 0 2.11 0.567 1 6 2 73.219 73.219 2;3;4 2.3286E-42 24573 TMT1-1 201.09 189.12 1700.6 2089.1 2211.4 1515.8 2299 1903.7 1607 2106 2230 1547 2327 1846 14 14 14 14 14 13 653840 18232 1019;1020;1029 18016 27941;27942;27943;27944;27945;27946;27947;27948;27949 36099;36100;36101;36102;36103;36104;36105;36106;36107;36108;36109;36110;36111;36112;36113 36103 15 TQLGAIYIDASCLTWEGQQFQGK Unmodified 2613.2533 0.25333751 1408 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 0 7 0 1 79.462 79.462 4 0.00010071 25073 TMT1-6 57.829 44.374 69.093 63.571 55.622 66.696 54.986 76.249 65 65 58 65 58 73 1 1 1 1 1 1 15691 18233 1408 18017 27950 36114 36114 1 TQLIQLSTLLR Unmodified 1284.7765 0.776536 2245 Q8TC07-2;Q8TC07-3;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 0 9 0 1 72.363 72.363 2 0.020062 20607 TMT1-8 62.088 19.489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18234 2245 18018 27951 36115 36115 1 TQLISDGGIFDK Unmodified 1292.6612 0.66123147 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 6.33 0.471 2 1 64.193 64.193 2;3 3.6161E-10 19697 TMT1-5 159.5 95.199 276.25 370.69 324.75 291.98 299.67 416.78 261 371 334 290 313 399 3 3 3 3 3 3 112910 18235 772 18019 27952;27953;27954 36116;36117;36118 36116 3 TQLLQDVQDENK Unmodified 1429.7049 0.7048872 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 4 0 1 53.606 53.606 3 1.4654E-05 15697 TMT1-3 86.699 64.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18236 2109 18020 27955 36119 36119 1 TQLPYEYYSLPFCQPSK Unmodified 2119.9925 0.99247837 2299 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 0 0 8 0 1 71.989 71.989 3 9.1326E-08 22269 TMT1-7 76.586 61.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18237 2299 18021 27956 36120 36120 1 TQLQLDER Unmodified 1001.5142 0.5141733 1280 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 0 3 0 1 39.343 39.343 2 0.0063645 11082 TMT1-2 106.2 10.289 146.48 126.83 160.01 106.79 149.18 142.85 138 131 160 109 152 138 1 1 1 1 1 1 19285 18238 1280 18022 27957 36121 36121 1 TQLVSNLK Unmodified 901.52328 0.52328142 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 8 0 1 48.136 48.136 2 0.0015846 12857 TMT1-7 141.2 51.498 168.45 314.94 275.43 296.18 290.65 247.55 160 311 285 291 299 240 1 1 1 1 1 1 25887 18239 396 18023 27958 36122 36122 1 TQLVSNLKK Unmodified 1029.6182 0.61824444 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 1 9 0 1 44.797 44.797 3 0.022193 9756 TMT1-8 68.525 37.147 379.44 500.32 364.7 399.03 408.71 448.85 358 500 383 392 423 432 1 1 1 1 1 1 24097 18240 396 18024 27959 36123 36123 1 TQLYEYLQNR Unmodified 1326.6568 0.65681479 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 6 0 1 55.845 55.845 2 0.0355 16473 TMT1-5 67.93 41.812 53.89 80.282 72.013 42.312 79.141 75.56 51 80 73 44 80 73 1 1 1 1 1 1 9480.5 18241 2977 18025 27960 36124 36124 1 TQNDVLHAENVK Unmodified 1366.6841 0.68409218 1015 P35241;P35241-5;P35241-4;P35241-3;P35241-2 RDX Radixin yes no 0 0 0 0 0 4 0 1 39.122 39.122 3 0.001992 9982 TMT1-3 73.877 49.347 99.607 114.81 113.55 102.72 106.21 89.711 94 116 116 102 109 87 1 1 1 1 1 1 7495 18242 1015 18026 27961 36125 36125 1 TQNPMVTGTSVLGVK Unmodified 1530.8076 0.80757813 925 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 0 0 0 8 0 1 58.444 58.444 3 4.1402E-05 16905 TMT1-7 87.99 59.693 114.93 231.35 145.24 106.84 193.34 197.02 109 227 152 109 196 190 1 1 1 1 1 1 27023 18243 925 18027 27962 36126 36126 1 TQNVLGEK Unmodified 887.47125 0.47124585 861 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 0 5 0 1 40.52 40.52 2 0.0085815 10224 TMT1-4 101.65 14.693 241.3 608.94 407.28 356.82 367.89 475.6 230 594 426 355 383 456 1 1 1 1 1 1 77276 18244 861 18028 27963 36127 36127 1 TQPAVATAATAAEK Unmodified 1328.6936 0.69359423 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 5 0 1 42.283 42.283 2 1.3118E-11 10954 TMT1-4 110.35 63.456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18245 1247 18029 27964 36128 36128 1 TQPILDILLK Unmodified 1152.7118 0.71181048 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 8 0 1 78.317 78.317 2 0.00046287 24781 TMT1-7 116.55 4.4169 146.76 151.34 92.797 149.61 177.82 165.49 138 153 101 145 182 160 2 2 2 2 2 2 14038 18246 2985 18030 27965 36129;36130 36130 2 TQPVPESQLLPGQR Unmodified 1548.826 0.82600539 550 P07948-2 LYN Tyrosine-protein kinase Lyn yes yes 0 0 0 0 0 5 0 1 48.992 48.992 2 6.3956E-18 13606 TMT1-4 154.94 107.68 54.421 26.715 28.193 29.363 34.73 45.913 51 29 29 29 36 44 1 1 1 1 1 1 9743.1 18247 550 18031 27966 36131 36131 1 TQPYDVYDQVEFDVPVGSR Unmodified 2213.0277 0.027677899 261 O75306-2;O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 0 0 3.5 0.5 1 1 68.055 68.055 3 0.0006119 22379 TMT1-2 56.748 47.091 62.406 95.697 70.279 59.509 41.961 92.611 59 95 73 59 44 88 3 3 3 3 2 3 15646 18248 261 18032 27967;27968 36132;36133;36134 36132 3 TQQHYYDK Unmodified 1081.4829 0.48287317 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 4 0 1 29.549 29.549 3 0.011029 6303 TMT1-3 72.643 44.475 122.89 143.6 143.17 100.69 120.16 112.77 116 145 145 102 123 109 1 1 1 1 1 1 25116 18249 515 18033 27969 36135 36135 1 TQQVVAIK Unmodified 885.52837 0.5283668 2825 Q9P289;Q9P289-3 STK26 Serine/threonine-protein kinase 26 yes no 0 0 0 0 0 7 0 1 43.401 43.401 2 0.0028666 10911 TMT1-6 134.48 52.238 123.09 144.14 110.28 133.82 148.49 126.88 116 145 116 131 152 123 1 1 1 1 1 1 11930 18250 2825 18034 27970 36136 36136 1 TQQYDDLIDEFMK Unmodified 1644.7341 0.73413841 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 4 0 1 78.238 78.238 3 0.00013204 25328 TMT1-3 90.707 70.326 53.446 117.9 114.63 79.477 60.151 121.94 51 116 116 80 65 116 1 1 1 1 1 1 9930.9 18251 859 18035 27971 36137 36137 1 TQSILCMPIK Unmodified 1189.6199 0.6199007 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 9 0 1 61.461 61.461 3 0.0016409 16262 TMT1-8 79.201 46.255 68.939 86.886 61.84 65.753 85.393 75.381 65 87 65 65 87 73 1 1 1 1 1 1 8473.3 18252 322 18036 27972 36138 36138 1 TQSNLPTSLEGLSNLADVDLSCNDLTR Unmodified 2932.4084 0.40839418 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 5 0 1 79.945 79.945 4 3.4083E-06 25730 TMT1-4 64.769 50.873 38.058 74.56 32.62 37.404 0 54.366 36 73 36 36 0 51 1 1 1 1 0 1 10223 18253 1666 18037 27973 36139 36139 1 TQSSLVPALTDFVR Unmodified 1532.8199 0.81985737 246 O60888-3;O60888;O60888-2 CUTA Protein CutA yes no 0 0 0 0 0 7.5 0.5 2 2 71.086 71.086 2;3 4.8823E-28 21876 TMT1-6 191.95 149.84 192.65 284.75 201.45 197.4 256.45 248.52 182 283 211 196 262 240 5 5 5 5 5 5 69189 18254 246 18038 27974;27975;27976;27977 36140;36141;36142;36143;36144 36142 5 TQSSSNLAELR Unmodified 1204.6048 0.60477922 921 P27986;P27986-4 PIK3R1 Phosphatidylinositol 3-kinase regulatory subunit alpha yes no 0 0 0 0 0 4 0 1 37.892 37.892 2 5.2012E-05 9471 TMT1-3 115.65 61.211 37.938 50.483 73.177 58.114 48.857 52.972 36 51 73 58 51 51 1 1 1 1 1 1 7410.7 18255 921 18039 27978 36145 36145 1 TQSTWVDSFFR Unmodified 1372.6412 0.64116473 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 8 0 1 69.073 69.073 2 1.0689E-08 21121 TMT1-7 126.66 90.102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18256 327 18040 27979 36146 36146 1 TQVAGGQLSFK Unmodified 1134.6033 0.60332266 1124 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 0 8 0 1 50.546 50.546 3 0.011301 13646 TMT1-7 60.628 33.53 107.57 198.85 146.13 131.56 155.1 181.06 102 196 152 131 160 174 1 1 1 1 1 1 39675 18257 1124 18041 27980 36147 36147 1 TQVGLIQYANNPR Unmodified 1472.7736 0.77357588 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 7 0 1 49.001 49.001 2 0.0018771 13168 TMT1-6 82.171 55.073 23.415 21.598 13.799 22.83 20.922 30.317 22 22 15 22 22 29 1 1 1 1 1 1 5143.8 18258 758 18042 27981 36148 36148 1 TQVTFFFPLDLSYR Unmodified 1732.8825 0.88245763 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 9 0 1 85.753 85.753 3 8.2673E-06 25770 TMT1-8 95.538 55.753 30.767 35.754 28.453 14.033 35.435 45.893 29 36 29 15 36 44 1 1 1 1 1 1 9896.7 18259 647 18043 27982 36149 36149 1 TQYFHVK Unmodified 921.47085 0.47085192 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 8 0 1 40.99 40.99 3 0.014662 10056 TMT1-7 74.301 40.942 390.04 877.52 607.45 512.74 567.56 544.52 371 859 633 512 583 526 1 1 1 1 1 1 83501 18260 1079 18044 27983 36150 36150 1 TQYSCYCCK Unmodified 1268.4624 0.46241378 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 6 0 1 38.571 38.571 3 0.043704 9603 TMT1-5 46.606 32.7 138.77 189.39 140.36 100.17 156.69 176.75 131 189 145 102 160 170 1 1 1 1 1 1 6476.7 18261 2857 18045 27984 36151 36151 1 TQYSSAMLESLLPGIR Unmodified 1764.908 0.90802046 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 8 0 1 77.051 77.051 3 5.4872E-16 24228 TMT1-7 134.76 127.7 30.743 51.876 18.857 37.706 27.567 30.127 29 51 22 36 29 29 1 1 1 1 1 1 9390.9 18262 1324 18046 27985 36152 36152 1 TREEECHFYAGGQVYPGEASR Unmodified 2442.0659 0.065871094 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 1 3 0 1 39.118 39.118 4 8.2523E-08 10982 TMT1-2 89.47 74.229 99.959 76.934 86.491 56.635 85.299 90.308 94 80 87 58 87 87 1 1 1 1 1 1 26799 18263 1679 18047 27986 36153 36153 1 TRPVILDPAEPTGDVGGGDR Unmodified 2021.0178 0.017781914 942 P29728;P29728-2 OAS2 2'-5'-oligoadenylate synthase 2 yes no 0 0 0 0 1 3 0 1 46.74 46.74 3 0.028968 14053 TMT1-2 39.767 28.488 23.264 44.924 19.338 37.116 57.408 45.266 22 44 22 36 58 44 1 1 1 1 1 1 9857.7 18264 942 18048 27987 36154 36154 1 TRPVVAAGAVGLAQR Unmodified 1464.8525 0.85249491 653 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 1 9 0 1 39.652 39.652 3 3.235E-19 8005 TMT1-8 138.68 119.86 53.957 56.725 80.669 49.738 63.644 60.012 51 58 80 51 65 58 1 1 1 1 1 1 10720 18265 653 18049 27988 36155 36155 1 TSAALSTVGSAISR Unmodified 1319.7045 0.70449327 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 7.5 0.5 1 1 49.929 49.929 2 1.6357E-27 13504 TMT1-6 190.66 146.28 146.68 126.3 127.5 132.98 138.23 213.52 138 130 131 131 145 204 2 2 2 2 2 2 31316 18266 172 18050 27989;27990 36156;36157 36156 2 TSACCPSCR Unmodified 1097.4052 0.40523325 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 4 0 1 22.463 22.463 2 0.00018711 3806 TMT1-3 146.58 115.97 5.2425 10.085 12.049 6.8043 6.8331 5.135 5 10 12 7 7 5 1 1 1 1 1 1 1070.1 18267 471 18051 27991 36158 36158 1 TSACGLFSVCYPR Unmodified 1516.6803 0.68026913 956 P30153;P30154-4;P30154;P30154-2;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 0 8 0 1 58.718 58.718 3 0.0056882 16997 TMT1-7 62.042 50.065 84.861 85.303 92.266 87.453 113.7 105.49 80 87 94 87 116 102 1 1 1 1 1 1 13170 18268 956 18052 27992 36159 36159 1 TSAHYEENK Unmodified 1077.4727 0.47270242 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 3 0 2 26.029 26.029 3 0.00034581 5734 TMT1-2 79.986 39.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18269 2079;2399 18053 27993;27994 36160;36161 36160 2 TSALENYINR Acetyl (Protein N-term) 1221.599 0.59896556 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 1 0 0 0 3 0 1 62.855 62.855 2 1.6426E-07 20281 TMT1-2 131.03 99.958 39.321 21.317 45.809 31.506 35.417 23.057 37 22 45 30 36 22 2 1 2 1 2 1 10844 18270 368 18054 27995 36162;36163 36162 2 TSALSDETK Unmodified 950.45566 0.45565537 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 4 0 1 37.393 37.393 2 0.00055015 9288 TMT1-3 134.66 72.101 115.79 113.95 99.787 70.852 158.95 150.03 109 116 102 73 160 145 1 1 1 1 1 1 10959 18271 1507 18055 27996 36164 36164 1 TSALTQGLER Acetyl (N-term) 1116.5775 0.57750184 1634 Q0VGL1 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes yes 1 0 0 0 0 2 0 1 54.036 54.036 2 0.00068635 16454 TMT1-1 107.69 68.902 38.292 43.912 19.276 38.178 59.213 21.762 36 44 22 37 59 22 1 1 1 1 1 1 13438 18272 1634 18056 27997 36165 36165 1 TSAPITCELLNK Unmodified 1345.6912 0.69115139 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 6 0 1 57.867 57.867 3 0.0011079 17261 TMT1-5 77.674 48.771 68.905 63.046 87.814 49.165 71.497 75.778 65 65 87 51 73 73 1 1 1 1 1 1 6251.3 18273 1763 18057 27998 36166 36166 1 TSAQHALTSVSR Unmodified 1256.6473 0.64731274 1373 P61073;P61073-2 CXCR4 C-X-C chemokine receptor type 4 yes no 0 0 0 0 0 9 0 1 30.024 30.024 3 0.0033789 4895 TMT1-8 61.11 38.193 11.73 6.5434 6.8025 7.1778 3.6015 7.3592 11 7 7 7 4 7 1 1 1 1 1 1 714.76 18274 1373 18058 27999 36167 36167 1 TSAQVVLDGLVDK Unmodified 1343.7296 0.72964538 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 6 0 1 66.638 66.638 2 0.00012411 20709 TMT1-5 102.28 67.389 69.342 49.153 26.042 45.743 42.353 45.695 65 51 29 44 44 44 1 1 1 1 1 1 6438 18275 1744 18059 28000 36168 36168 1 TSASIILR Unmodified 859.51272 0.51271674 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 7 0 1 44.254 44.254 2 0.022402 11210 TMT1-6 87.251 46.399 276.71 326.64 284.64 182.98 352.82 324.66 261 329 290 189 356 314 2 2 2 2 2 2 55678 18276 770 18060 28001 36169;36170 36169 2 TSAVPSPCGK Unmodified 1002.4804 0.48043033 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 38.153 38.153 2 5.2542E-05 9452 TMT1-5 111.61 56.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18277 1194 18061 28002 36171 36171 1 TSDSTFLVFMSHGIR Unmodified 1696.8243 0.82429083 938 P29466-2;P29466;P29466-3;P29466-4 CASP1 Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10 yes no 0 0 0 0 0 9 0 1 64.965 64.965 3 1.6599E-05 17701 TMT1-8 79.036 62.504 68.743 117.64 68.65 65.805 61.036 114.45 65 116 73 65 65 109 1 1 1 1 1 1 8520.8 18278 938 18062 28003 36172 36172 1 TSEEFVHINR Unmodified 1230.5993 0.59929991 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 4 0 1 38.138 38.138 3 0.0049956 9612 TMT1-3 72.922 49.246 170 178.93 131.17 147.18 185.55 156.74 160 181 138 145 189 152 1 1 1 1 1 1 28723 18279 1229 18063 28004 36173 36173 1 TSEIYVHR Unmodified 1003.5087 0.50869399 2600 Q9GZR7-2;Q9GZR7 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 0 0 4 0 1 30.802 30.802 3 0.0048932 6677 TMT1-3 85.212 44.86 61.712 33.147 59.567 19.967 28.126 37.573 58 36 58 22 29 36 1 1 1 1 1 1 1996.9 18280 2600 18064 28005 36174 36174 1 TSEVDLAKPLVK Unmodified 1298.7446 0.74456717 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 1 6.5 0.5 1 1 52.108 52.108 3 0.00019676 14956 TMT1-5 97.957 69.63 442.27 713.03 625.5 493.15 622.21 715.65 419 708 640 496 640 688 2 2 2 2 2 2 43172 18281 2267 18065 28006;28007 36175;36176 36175 2 TSEVYVWGGGK Unmodified 1181.5717 0.57168818 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 7 0 1 53.967 53.967 2 1.1111E-07 15091 TMT1-6 116.3 78.218 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18282 2251 18066 28008 36177 36177 1 TSFFLGEVGNAAK Unmodified 1339.6772 0.67721588 1936 Q49A26-5;Q49A26-2;Q49A26-3;Q49A26;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 0 8 0 1 64.204 64.204 3 0.00015237 19208 TMT1-7 89.959 50.941 68.694 148.8 50.536 66.137 100.82 82.403 65 145 58 65 102 80 1 1 1 1 1 1 9963.1 18283 1936 18067 28009 36178 36178 1 TSFFQALGITTK Unmodified 1312.7027 0.70270235 496 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 0 9 0 1 74.163 74.163 3 4.9936E-05 21240 TMT1-8 96.059 64.831 207.24 282.53 275.63 161.06 268.09 232.2 196 283 278 167 271 225 2 2 2 2 2 2 56344 18284 496 18068 28010 36179;36180 36179 2 TSFHALTSILK Unmodified 1216.6816 0.68157298 1575 Q02978 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 0 0 0 0 0 9 0 1 58.075 58.075 3 0.0020923 14963 TMT1-8 67.08 32.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18285 1575 18069 28011 36181 36181 1 TSFPEDTVITYK Unmodified 1399.6871 0.68711187 557 P08174-4;P08174;P08174-3;P08174-5;P08174-2;P08174-6;P08174-7 CD55 Complement decay-accelerating factor yes no 0 0 0 0 0 5.5 0.5 1 1 59.753 59.753 3 0.00057694 17844 TMT1-4 83.182 58.8 167.73 286.86 239.74 212.28 215.45 295.53 159 284 247 211 225 283 3 3 3 3 3 3 10344 18286 557 18070 28012;28013 36182;36183;36184;36185 36184 4 TSFQNLIEGFEALLK Unmodified 1708.9036 0.903587 862 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 0 0 0 9 0 1 101.85 101.85 3 7.9367E-06 31703 TMT1-8 89.136 54.249 23.411 37.314 28.44 13.043 30.005 22.596 22 37 29 14 30 22 1 2 2 2 2 2 2094.1 18287 862 18071 28014 36186;36187 36186 2 TSFTCACR Unmodified 1001.4059 0.40588518 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 6.5 0.5 1 1 33.486 33.486 2 8.5333E-05 7528 TMT1-5 155.82 132.8 145.94 204.11 185.79 128.52 191.06 234.4 138 204 189 131 196 225 2 2 2 2 2 2 26975 18288 1684 18072 28015;28016 36188;36189 36188 2 TSFTPVGDVFELNFMNVK Unmodified 2043.9976 0.99756374 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 8 0 1 86.358 86.358 3 1.8831E-31 27720 TMT1-7 142.57 123.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18289 479 18073 28017 36190 36190 1 TSFVTAYK Unmodified 915.47018 0.47018322 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 8 0 1 50.075 50.075 2 0.0042318 13634 TMT1-7 126.52 94.051 92.392 108.59 69.1 65.202 91.685 106.12 87 109 73 65 94 102 1 1 1 1 1 1 9470.3 18290 2305 18074 28018 36191 36191 1 TSGNVEDDLIIFPDDCEFKR Unmodified 2369.0845 0.084540851 1884 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 0 0 1 4 0 1 67.428 67.428 4 0.0056134 21136 TMT1-3 45.363 29.224 46.636 65.322 41.475 44.423 63.632 67.474 44 65 44 44 65 65 1 1 1 1 1 1 5834.4 18291 1884 18075 28019 36192 36192 1 TSGSVYITLK Unmodified 1067.5863 0.58627561 1049 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 0 7.5 0.5 1 1 53.833 53.833 2 3.9502E-27 14958 TMT1-6 173.37 84.229 129.6 212.08 220.62 212.27 218.85 287.97 123 211 225 210 228 276 2 2 2 2 2 2 27481 18292 1049 18076 28020;28021 36193;36194;36195 36193 3 TSGTLISFIYPAQNPELLNK Unmodified 2205.1681 0.16813455 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8.33 0.471 2 1 78.9 78.9 3;4 8.104E-15 25047 TMT1-7 116.6 104.82 247.03 272.49 269.94 249.13 252.46 295.54 233 276 276 247 262 284 5 5 5 5 5 5 41230 18293 1702 18077 28022;28023;28024 36196;36197;36198;36199;36200 36197 5 TSHGHLIFPK Unmodified 1135.6138 0.61382777 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 8.5 0.5 1 1 37.395 37.395 4 0.012354 8512 TMT1-7 58.916 34.929 146.2 188.63 155.93 91.073 126.34 189.34 138 189 159 94 131 181 2 2 2 2 2 2 16507 18294 758 18078 28025;28026 36201;36202 36201 2 TSIAIDTIINQK Unmodified 1315.7347 0.73473076 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 7 0 1 63.888 63.888 3 1.4894E-11 18950 TMT1-6 165.66 84.648 530.64 877.7 602.31 539.14 574.97 994.16 502 868 630 536 606 948 2 2 2 2 2 2 178570 18295 888 18079 28027 36203;36204 36203 2 TSIDAYDNFDNISLAQR Unmodified 1941.9068 0.90683448 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 4 0 2 64.601 64.601 2;3 4.396E-30 20093 TMT1-3 169.92 146.12 176.26 277.47 257.58 163.49 195.98 257.71 167 276 261 167 203 247 3 3 3 3 3 3 66931 18296 1540 18080 28028;28029 36205;36206;36207 36206 3 TSIEDQDELSSLLQVPLVAGTVNR Unmodified 2583.3392 0.33917563 1338 P56537-2;P56537 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 0 5.5 0.5 1 1 85.196 85.196 3 2.1596E-16 27713 TMT1-4 94.389 76.824 39.446 35.429 12.886 22.889 20.663 37.786 37 36 15 22 22 36 1 1 1 1 1 1 5146.9 18297 1338 18081 28030;28031 36208;36209 36208 2 TSITDMELALPDFFK Unmodified 1726.8488 0.84877424 297 O75718 CRTAP Cartilage-associated protein yes yes 0 0 0 0 0 7 0 1 88.461 88.461 3 0.0007828 28494 TMT1-6 70.98 51.402 15.734 36.749 29.542 14.238 21.061 37.775 15 36 30 15 22 36 1 1 1 1 1 1 2849.6 18298 297 18082 28032 36210 36210 1 TSKAEELLAEEK Unmodified 1346.6929 0.69292553 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 1 5 0 1 50.991 50.991 3 0.0056135 14429 TMT1-4 68.972 20.313 84.227 162.33 133.58 124.97 80.031 152.29 80 160 138 123 87 145 1 1 1 1 1 1 13844 18299 68 18083 28033 36211 36211 1 TSLDIEEYSDTEVQK Unmodified 1755.8051 0.80505475 1245 P51580 TPMT Thiopurine S-methyltransferase yes yes 0 0 0 0 0 3 0 1 58.466 58.466 3 2.482E-08 18599 TMT1-2 92.265 67.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18300 1245 18084 28034 36212 36212 1 TSLEVSPNPEPPEKPVR Unmodified 1874.9738 0.97379183 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 1 5 0 1 45.594 45.594 3 1.5567E-18 12331 TMT1-4 132.01 117.13 139.05 158.86 120.09 86.385 82.34 167.14 131 160 124 87 88 159 2 2 2 2 2 2 29963 18301 2849 18085 28035 36213;36214 36214 2 TSLLASGAPR Unmodified 971.53999 0.53999412 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 7.5 0.5 1 1 42.214 42.214 2 0.00074255 10438 TMT1-7 108.15 68.049 115.42 175.53 109.17 117.39 153.62 242.93 109 174 116 116 160 232 2 2 2 2 2 2 12744 18302 817 18086 28036;28037 36215;36216 36216 2 TSLMNQYVNK Unmodified 1196.586 0.58595803 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 8 0 2 51.495 51.495 2;3 1.586E-13 14209 TMT1-7 155.42 118.66 146.3 185.7 140.19 108.27 133.61 167.81 138 186 145 109 138 161 1 1 1 1 1 1 20096 18303 1237 18087 28038;28039 36217;36218 36218 2 TSLMNQYVNKK Unmodified 1324.6809 0.68092105 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 1 9 0 1 47.469 47.469 3 0.0014738 10755 TMT1-8 85.845 61.994 57.329 64.486 48.378 59.401 58.996 91.059 54 65 51 58 62 87 1 1 1 1 1 1 20817 18304 1237 18088 28040 36219 36219 1 TSLPWQGLK Unmodified 1028.5655 0.56548059 1163 P48729-3;P48729;P48729-2 CSNK1A1 Casein kinase I isoform alpha yes no 0 0 0 0 0 9 0 1 60.479 60.479 2 0.00070609 15915 TMT1-8 116.52 66.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18305 1163 18089 28041 36220 36220 1 TSLSALTQLMK Unmodified 1191.6533 0.65330932 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 9 0 1 69.87 69.87 3 0.00011726 19613 TMT1-8 94.616 61.776 46.636 65.322 41.456 44.844 41.332 76.639 44 65 44 44 44 73 1 1 1 1 1 1 5822.2 18306 48 18090 28042 36221 36221 1 TSNHAIVLAQLITK Unmodified 1507.8722 0.8722273 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 9 0 1 58.293 58.293 3 4.62E-05 15027 TMT1-8 85.473 58.324 61.268 71.843 101.55 94.267 128.83 112.52 58 73 102 94 131 109 1 1 1 1 1 1 7396.1 18307 1824 18091 28043 36222 36222 1 TSNLNEELGQVK Unmodified 1330.6729 0.67285879 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0;Q9NTI2-3;Q9NTI2-1;Q9NTI2 ATP8A1;ATP8A2 Phospholipid-transporting ATPase IA;Phospholipid-transporting ATPase IB yes no 0 0 0 0 0 4 0 1 50.416 50.416 3 0.00024456 14421 TMT1-3 90.731 52.736 76.924 147.23 111.36 110.69 96.137 159.29 73 145 116 109 102 152 1 1 1 1 1 1 11649 18308 2968 18092 28044 36223 36223 1 TSPDAFVQLALQLAHYK Unmodified 1901.0047 0.0046980325 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 9 0 1 85.38 85.38 3 5.2884E-31 25702 TMT1-8 155.64 132.41 84.828 92.767 91.455 95.623 88.673 153.11 80 94 94 94 94 146 2 2 2 2 2 2 19708 18309 1219 18093 28045 36224;36225 36225 2 TSPLNFK Unmodified 805.4334 0.43340378 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 8 0 1 49.961 49.961 2 0.032499 13609 TMT1-7 89.55 26.835 146.18 133.56 204.57 142.09 223.48 155.65 138 138 203 145 225 152 1 1 1 1 1 1 15622 18310 1601 18094 28046 36226 36226 1 TSPQTLSNLCLK Unmodified 1360.7021 0.70205043 2904 Q9UL18;Q9H9G7-2;Q9HCK5 AGO1;AGO3;AGO4 Protein argonaute-1;Protein argonaute-3;Protein argonaute-4 no no 0 0 0 0 0 8 0 1 55.09 55.09 3 1.6911E-05 15653 TMT1-7 105.25 67.639 92.427 101.13 69.543 65.299 85.157 82.85 87 102 73 65 87 80 1 1 1 1 1 1 8066.8 18311 2904 18095 28047 36227 36227 1 TSPSGKPATLK Unmodified 1085.6081 0.60807369 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 1 8.5 0.5 1 1 36.219 36.219 3 0.0010864 8059 TMT1-7 90.793 52.039 527.4 764.36 521.34 517.94 738.22 867.98 498 760 548 515 757 834 2 2 2 2 2 2 48904 18312 914 18096 28048;28049 36228;36229 36228 2 TSQENISFETMYDVLSTKPVLNK Unmodified 2643.3102 0.31018369 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 1 8 0 1 77.697 77.697 5 0.0026964 24434 TMT1-7 43.523 30.203 61.533 63.948 63.573 58.584 54.296 107.18 58 65 65 58 58 102 1 1 1 1 1 1 4111 18313 1714 18097 28050 36230 36230 1 TSRPENAIIYNNNEDFQVGQAK Unmodified 2507.2041 0.20407913 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 5 0 2 50.025 50.025 3;4 4.0419E-29 13996 TMT1-4 139.44 125.43 176.59 255.74 219.85 165.44 212.14 241.26 167 255 225 167 218 232 2 2 2 2 2 2 53627 18314 937 18098 28051;28052 36231;36232 36232 2 TSSAETPTIPLGSAVEAIK Unmodified 1870.9888 0.9887732 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 5.5 0.5 1 1 66.268 66.268 3 8.7651E-10 20435 TMT1-4 97.32 75.407 115.5 136.88 129.48 77.723 106.3 120.62 109 138 131 80 109 116 2 2 2 2 2 2 24187 18315 1913 18099 28053;28054 36233;36234 36233 2 TSSAFVGK Unmodified 795.41267 0.41266834 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 7 0 1 41.202 41.202 2 0.012693 10031 TMT1-6 96.253 82.258 99.608 153.67 80.459 88.739 82.76 121.29 94 152 87 87 87 116 1 1 1 1 1 1 7953.8 18316 2465 18100 28055 36235 36235 1 TSSISFEILGFNSK Unmodified 1528.7773 0.77732386 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 8 0 1 73.769 73.769 3 1.8079E-05 22957 TMT1-7 94.673 74.567 53.882 72.706 79.707 49.811 62.835 83.487 51 73 80 51 65 80 1 1 1 1 1 1 12239 18317 2563 18101 28056 36236 36236 1 TSSLAEAENMADLIDGYCR Unmodified 2114.9249 0.92486909 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 4 0 1 74.375 74.375 3 6.5927E-11 23821 TMT1-3 103.85 92.907 7.1276 22.164 45.651 13.263 21.875 15.366 7 22 44 15 22 15 1 1 1 1 1 1 6688.1 18318 1770 18102 28057 36237 36237 1 TSSLLILTENENEK Unmodified 1589.8148 0.81483158 3034 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 0 0 0 0 0 5 0 1 61.823 61.823 3 0.00015961 18661 TMT1-4 81.185 70.331 77.355 93.387 84.541 80.818 84.187 90.34 73 94 87 80 87 87 1 1 1 1 1 1 8938.8 18319 3034 18103 28058 36238 36238 1 TSSQPGFLER Unmodified 1120.5513 0.55128709 2535 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 0 5 0 1 40.441 40.441 2 0.00042316 10225 TMT1-4 118.23 44.061 115.9 121.8 75.054 81.119 98.266 136.84 109 123 80 80 102 131 1 1 1 1 1 1 8957.5 18320 2535 18104 28059 36239 36239 1 TSTADYAMFK Unmodified 1133.5063 0.50631073 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 53.576 53.576 2;3 6.6986E-13 15424 TMT1-4 147.2 106.01 1114 1793.3 1333.6 1234.6 1264.1 2141.8 1054 1777 1388 1224 1333 2043 5 5 5 5 5 5 324060 18321 439 18105 28060;28061;28062;28063;28064 36240;36241;36242;36243;36244;36245 36241 6 TSTADYAMFK Oxidation (M) 1149.5012 0.50122535 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 1 0 0 6 0 1 47.275 47.275 3 0.012165 13126 TMT1-5 74.267 48.608 383.94 619.5 409.38 425.11 391.65 758.48 363 613 432 418 418 722 2 2 2 2 2 2 40392 18322 439 18105 28065 36246;36247 36247 57 2 TSTDLDVDVDQPK Unmodified 1431.6729 0.67291837 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 2.5 0.5 1 1 50.634 50.634 3 9.347E-05 15188 TMT1-1 93.011 69.635 115.19 167.34 154.58 177.66 175.72 189 109 167 160 174 182 182 2 2 2 2 2 2 32421 18323 1797 18106 28066;28067 36248;36249 36248 2 TSTDLDVDVDQPKEEK Unmodified 1817.8531 0.85306758 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 1 3 0.816 1 1 1 47.675 47.675 3;4 1.914E-23 14290 TMT1-2 173.36 144.23 734.94 1055.5 919.09 646.31 846.42 1048.2 695 1053 938 656 872 1006 5 5 5 5 5 5 163170 18324 1797 18107 28068;28069;28070 36250;36251;36252;36253;36254 36252 5 TSTGAPAAIK Unmodified 915.50255 0.50254598 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 6 0 1 37.571 37.571 2 0.00024874 9217 TMT1-5 126.82 98.426 176.66 249.44 214.37 126.77 193.44 258.85 167 249 218 131 199 248 1 1 1 1 1 1 19098 18325 1066 18108 28071 36255 36255 1 TSTGAPAAIKK Unmodified 1043.5975 0.597509 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 1 8 0 1 35.905 35.905 3 3.7273E-06 8031 TMT1-7 124.42 85.118 566.22 739.96 869.5 576.34 713.98 1008.3 536 745 871 587 741 965 1 1 1 1 1 1 50099 18326 1066 18109 28072 36256 36256 1 TSTGSASSSAAVAASSK Unmodified 1468.7005 0.7005301 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 6 0 1 34.953 34.953 3 6.7676E-19 8204 TMT1-5 134.25 112.69 30.462 82.394 40.188 52.143 64.047 45.076 29 80 44 51 65 44 1 1 1 1 1 1 5451.5 18327 2851 18110 28073 36257 36257 1 TSTLSVSSFFK Unmodified 1202.6183 0.61830402 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 9 0 1 66.795 66.795 2 9.5382E-07 18412 TMT1-8 112.83 69.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18328 2223 18111 28074 36258 36258 1 TSTPEDFIR Unmodified 1064.5138 0.51383895 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.71 2.43 1 1 2 1 1 1 47.061 47.061 2;3 1.3591E-09 12766 TMT1-4 178.65 71.056 2088.7 2845 2529.5 2007.9 2499.3 2907.1 1974 2846 2588 2018 2573 2794 11 11 11 11 11 11 1761400 18329 3010 18112 28075;28076;28077;28078;28079;28080;28081 36259;36260;36261;36262;36263;36264;36265;36266;36267;36268;36269 36266 11 TSTSQAVFR Unmodified 995.50361 0.50360861 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 34.846 34.846 2 0.00055015 8127 TMT1-5 134.66 92.43 68.886 86.738 70.871 57.547 86.32 59.365 65 87 73 58 87 58 1 1 1 1 1 1 9951.1 18330 714 18113 28082 36270 36270 1 TSTVDLPIENQLLWQIDR Unmodified 2140.1164 0.11643333 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 5.5 0.5 1 1 79.722 79.722 3 7.1978E-08 25823 TMT1-5 96.379 58.949 61.723 41.811 50.407 43.886 63.913 60.004 58 44 51 44 65 58 1 1 1 1 1 1 15397 18331 1009 18114 28083;28084 36271;36272 36272 2 TSTVLTR Unmodified 776.43922 0.43921744 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6 0 1 32.273 32.273 2 0.033629 7085 TMT1-5 89.046 33.443 61.72 64.468 31.739 68.105 55.727 52.776 58 65 36 65 58 51 1 1 1 1 1 1 5277.9 18332 2718 18115 28085 36273 36273 1 TSTVWDNNNPIWSVR Unmodified 1787.8591 0.85909643 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 8 0 1 65.532 65.532 3 1.4266E-07 19677 TMT1-7 104.73 92.348 93.446 124.65 58.716 82.24 90.388 121.08 88 124 65 80 94 116 2 2 2 2 2 2 19645 18333 699 18116 28086 36274;36275 36274 2 TSVETALR Unmodified 875.47125 0.47124585 1143 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 0 4 0 1 37.196 37.196 2 0.00019261 9176 TMT1-3 153.78 116.75 615.32 699.88 587.2 452.36 587.62 711.31 580 706 603 456 605 683 2 2 2 2 2 2 117980 18334 1143 18117 28087 36276;36277 36276 2 TSYAQHQQVR Unmodified 1216.5949 0.59488324 1386 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 0 6 2 1 1 22.226 22.226 3 9.4692E-05 3755 TMT1-3 115.78 97.514 21.217 12.966 29.9 13.309 22.7 21.738 20 14 29 14 23 21 3 3 3 2 3 3 2968.4 18335 1386 18118 28088;28089 36278;36279;36280 36278 3 TSYGWIEIVGCADR Unmodified 1625.7508 0.75079153 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 6 0 2 68.372 68.372 2;3 1.3313E-05 21369 TMT1-5 97.273 71.626 61.192 86.743 101.64 72.136 84.843 82.859 58 87 102 73 87 80 2 2 2 2 2 2 16710 18336 1084 18119 28090;28091 36281;36282 36281 2 TSYLTELIDR Unmodified 1209.6241 0.62411768 3054;2825 Q9P289;Q9P289-2;Q9P289-3;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 5 0 1 65.357 65.357 2 0.00043402 20063 TMT1-4 117.7 66.352 231.2 281.88 217.73 171.52 302.15 262.14 218 283 225 174 305 254 2 2 2 2 2 2 42987 18337 2825;3054 18120 28092 36283;36284 36284 2 TTAAMWALQTVEK Unmodified 1448.7334 0.73335055 2046 Q6UW68 TMEM205 Transmembrane protein 205 yes yes 0 0 0 0 0 8 0 1 68.168 68.168 2 0.00013912 20788 TMT1-7 101.89 52.521 23.19 20.971 52.215 35.726 27.109 46.13 22 22 51 36 29 44 1 1 1 1 1 1 4207.1 18338 2046 18121 28093 36285 36285 1 TTAEYQVLVEGVPSPR Unmodified 1744.8996 0.89956426 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4.5 0.5 1 1 60.598 60.598 2;3 0.00064786 18107 TMT1-4 68.41 49.2 61.397 94.868 60.322 89.931 83.218 106.36 58 94 65 87 87 102 1 1 1 1 1 1 23079 18339 740 18122 28094;28095 36286;36287 36287 2 TTAVEIDYDSLK Unmodified 1353.6664 0.66637643 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 4.5 0.5 1 1 59.273 59.273 3 1.5269E-07 17904 TMT1-3 117.21 86.022 206.23 436.21 315.31 253.44 286.52 363.86 196 428 327 254 297 349 3 3 3 3 3 3 51483 18340 126 18123 28096;28097 36288;36289;36290 36288 3 TTCEAFQLQEFDR Unmodified 1643.725 0.72497071 182 O43586-2;O43586 PSTPIP1 Proline-serine-threonine phosphatase-interacting protein 1 yes no 0 0 0 0 0 4 0 1 57.705 57.705 3 6.1546E-05 17309 TMT1-3 97.273 77.166 38.004 65.777 49.068 44.364 42.71 37.157 36 65 51 44 44 36 1 1 1 1 1 1 6817.8 18341 182 18124 28098 36291 36291 1 TTCLPMFGYK Unmodified 1216.5621 0.56205147 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 9 0 1 62.795 62.795 3 0.0002074 16860 TMT1-8 105.2 65.93 454.02 940.16 802.85 528.26 401.78 1056.7 432 925 818 534 442 1002 2 2 2 2 2 2 143860 18342 484 18125 28099 36292;36293 36293 2 TTCSCSLAVQLSK Unmodified 1453.6905 0.69049946 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 7.5 0.5 1 1 51.35 51.35 3 4.5244E-08 14150 TMT1-7 98.531 76.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18343 193 18126 28100;28101 36294;36295 36295 2 TTDDLTEAWLQEK Unmodified 1548.7308 0.7307676 215 O60234 GMFG Glia maturation factor gamma yes yes 0 0 0 0 0 4.67 0.471 1 2 67.143 67.143 2;3 9.744E-11 20670 TMT1-4 142.07 102.15 524.81 735.23 619.67 487.75 637.02 687.51 496 734 636 491 653 662 4 4 4 4 4 4 193670 18344 215 18127 28102;28103;28104 36296;36297;36298;36299 36298 4 TTDFSDFLSIVGCTK Unmodified 1689.792 0.79198764 2862 Q9UHD1 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 82.805 82.805 3 6.0597E-05 26411 TMT1-7 85.493 56.59 92.144 123.01 98.646 86.94 120.79 112.75 87 123 102 87 123 109 2 2 2 2 2 2 19057 18345 2862 18128 28105 36300;36301 36300 2 TTDGVYEGVAIGGDR Unmodified 1508.7107 0.71070086 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 3 0 1 48.961 48.961 3 0.040463 14823 TMT1-2 39.531 17.299 123.19 151.97 86.637 119.69 103.05 159.09 116 152 94 116 109 152 1 1 1 1 1 1 17599 18346 1283 18129 28106 36302 36302 1 TTDLLTDWEK Unmodified 1220.5925 0.5924832 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 66.491 66.491 3 0.0047772 20440 TMT1-4 73.499 32.1 107.98 168.68 103.44 86.102 150.13 142.82 102 167 109 87 152 138 1 1 1 1 1 1 12163 18347 1763 18130 28107 36303 36303 1 TTDTASVQNEAK Unmodified 1263.5943 0.59427411 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 2.5 0.5 1 1 34.671 34.671 3 1.6911E-05 9140 TMT1-2 105.25 71.843 538.66 549.24 614.8 530.13 723.64 545.4 508 560 623 531 733 531 2 2 2 2 2 2 38828 18348 2913 18131 28108;28109 36304;36305 36305 2 TTEAEEVFVPVLNIK Unmodified 1687.9033 0.90325265 2103 Q86TP1 PRUNE Protein prune homolog yes yes 0 0 0 0 0 5.5 0.5 1 1 74.85 74.85 3 2.8174E-08 23805 TMT1-4 114.56 86.236 115.28 144.91 159.04 107.87 95.204 190.23 109 146 160 109 102 181 2 2 2 2 2 2 24868 18349 2103 18132 28110;28111 36306;36307 36306 2 TTEAEKNER Unmodified 1076.5098 0.5098162 894 P26038 MSN Moesin yes yes 0 0 0 0 1 2.5 0.5 1 1 22.857 22.857 3 0.0082065 4495 TMT1-2 76.572 46.254 382.73 209.61 238.25 252.63 224.88 180.13 359 225 244 248 232 175 3 3 3 3 3 3 36115 18350 894 18133 28112;28113 36308;36309;36310 36310 3 TTEGCLNPR Unmodified 1046.4815 0.48149296 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 2.5 0.5 1 1 30.672 30.672 2 0.0004924 7564 TMT1-2 136.27 59.494 107.66 199.08 132.01 108.18 164.02 165.88 102 196 138 109 167 160 2 2 2 2 2 2 26548 18351 485 18134 28114;28115 36311;36312 36312 2 TTFEDLIQR Unmodified 1121.5717 0.57168818 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 5 0 1 58.431 58.431 2 0.0004359 17283 TMT1-4 137.84 74.963 99.501 114.51 131.62 61.645 82.687 159.67 94 116 131 65 87 152 1 1 1 1 1 1 21249 18352 336 18135 28116 36313 36313 1 TTFTVAQNER Unmodified 1165.5728 0.57275081 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P50225-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 5.5 0.5 1 1 38.228 38.228 2 1.4956E-20 9315 TMT1-4 196.52 157.97 177.22 188.42 171 113.83 147.21 190.88 167 191 174 116 152 183 1 1 1 1 1 1 42492 18353 617;1214 18136 28117;28118 36314;36315 36314 2 TTGEVVSGVVSK Unmodified 1161.6241 0.62411768 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 6 0 2 47.14 47.14 2;3 1.3193E-08 13015 TMT1-5 146.16 98.902 183.97 214.92 276.91 177.23 217.79 274.14 174 218 276 181 225 263 2 2 2 2 2 2 15451 18354 1744 18137 28119;28120 36316;36317 36316 2 TTGFGMIYDSLDYAK Unmodified 1680.7705 0.77052392 1449 P62847-2;P62847-3;P62847;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 0 6.5 0.5 1 1 73.494 73.494 3 1.1924E-05 22726 TMT1-6 92.063 61.625 123.09 160.34 95.556 102.52 173.77 102.71 116 160 102 102 174 101 2 2 2 2 2 2 25983 18355 1449 18138 28121;28122 36318;36319 36319 2 TTGIVETHFTFK Unmodified 1379.7085 0.70851601 480;577 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P09471-2;P09471;P08754 GNAI2;GNAI1;GNAO1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha no no 0 0 0 0 0 7 0 1 53.319 53.319 3 0.00023598 14844 TMT1-6 90.926 57.979 230.41 413.53 238.05 218.22 369.77 362.55 218 407 253 219 375 350 1 1 1 1 1 1 23754 18356 480;577 18139 28123 36320 36320 1 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Oxidation (M) 3198.6019 0.60194904 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 0 5.5 2.22 1 1 2 1 1 63.472 63.472 4 1.3896E-34 19226 TMT1-5 118.63 106.87 678.65 758.39 714.31 622.01 695.14 856.42 640 767 731 620 720 822 11 11 11 11 11 11 645310 18357 1357;1479 18140 28124;28125;28126;28127;28128;28129 36321;36322;36323;36324;36325;36326;36327;36328;36329;36330;36331 36323 222 11 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Unmodified 3182.607 0.60703441 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 6.75 1.85 1 1 4 4 4 2 66.331 66.331 4;5 7.3339E-101 20523 TMT1-5 214.27 194.01 3852 4799.9 4055.9 3385.1 4114.5 5140.1 3635 4819 4172 3389 4251 4932 34 34 34 34 34 34 3987700 18358 1357;1479 18140 28130;28131;28132;28133;28134;28135;28136;28137;28138;28139;28140;28141;28142;28143;28144;28145 36332;36333;36334;36335;36336;36337;36338;36339;36340;36341;36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361;36362;36363;36364;36365 36341 34 TTGKPIEASIR Unmodified 1171.6561 0.65608651 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 1 7 0 1 37.559 37.559 3 0.0096255 8577 TMT1-6 66.953 37.625 775.48 1288.6 941.96 834.5 1286.4 1234 734 1275 980 837 1307 1192 1 1 1 1 1 1 102860 18359 555 18141 28146 36366 36366 1 TTGTPPDSSLVTYELHSRPEQDK Unmodified 2557.2296 0.22962518 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 1 4 0 1 47.907 47.907 4 8.5837E-08 13471 TMT1-3 78.975 55.679 61.262 110.68 69.493 57.082 115.39 96.911 58 109 73 58 116 94 1 1 1 1 1 1 13588 18360 1720 18142 28147 36367 36367 1 TTHFVEGGDAGNREDQINR Unmodified 2114.973 0.97295699 775 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 1 2.5 0.5 1 1 32.196 32.196 4 7.8717E-10 8131 TMT1-2 99.044 86.196 169.52 171.12 218.02 126.97 171.29 142.22 160 175 217 131 174 138 2 2 2 2 2 2 40240 18361 775 18143 28148;28149 36368;36369 36369 2 TTIAQQVK Unmodified 887.50763 0.50763136 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 7 0 1 39.425 39.425 2 0.0018362 9333 TMT1-6 139.88 67.739 77.39 85.929 84.989 80.806 83.381 113.81 73 87 87 80 87 109 1 1 1 1 1 1 7264.7 18362 1129 18144 28150 36370 36370 1 TTIFTDAK Unmodified 895.4651 0.46509784 1846 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 0 6.5 0.5 1 1 50.028 50.028 2 0.0013366 13581 TMT1-6 142.79 79.641 423.36 500.35 376.44 397.64 445.34 541.61 399 503 394 392 461 520 2 2 2 2 2 2 47419 18363 1846 18145 28151;28152 36371;36372 36372 2 TTILLQVAALK Unmodified 1169.7384 0.73835958 2305 Q92608;Q92608-2 DOCK2 Dedicator of cytokinesis protein 2 yes no 0 0 0 0 0 9 0 1 73.345 73.345 2 0.032298 21024 TMT1-8 63.415 41.909 54.272 50.047 33.322 52.834 49.1 52.965 51 51 36 51 51 51 1 1 1 1 1 1 3650.7 18364 2305 18146 28153 36373 36373 1 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR Unmodified 3410.5638 0.56376843 816 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 0 2 0 1 75.105 75.105 4 1.0158E-08 24466 TMT1-1 67.911 62.191 15.974 29.283 29.648 21.885 20.929 31.383 15 29 30 22 22 30 1 2 2 2 2 2 9144.1 18365 816 18147 28154 36374;36375 36374 2 TTITTTTTSSSGLGSPMIVGSPR Unmodified 2251.1366 0.13657642 2451 Q96S97 MYADM Myeloid-associated differentiation marker yes yes 0 0 0 0 0 8 0 1 56.856 56.856 3 7.8735E-30 16315 TMT1-7 113.42 97.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18366 2451 18148 28155 36376 36376 1 TTIYEIQDDR Unmodified 1252.5935 0.59354583 1899 Q16666-3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 0 2.5 0.5 1 1 47.121 47.121 2 8.1273E-05 13974 TMT1-2 97.813 80.345 38.212 51.245 26.483 36.546 65.057 36.52 36 51 29 36 65 36 1 1 1 1 1 1 5835.8 18367 1899 18149 28156;28157 36377;36378 36378 2 TTLDSPLGK Unmodified 930.50221 0.50221163 747 P16455 MGMT Methylated-DNA--protein-cysteine methyltransferase yes yes 0 0 0 0 0 6 0 1 49.03 49.03 2 0.0010554 13765 TMT1-5 83.998 40.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18368 747 18150 28158 36379 36379 1 TTLEMEFAK Unmodified 1068.5161 0.51614714 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 5 0 1 57.664 57.664 2 0.00036962 16997 TMT1-4 107.15 76.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18369 2309 18151 28159 36380 36380 1 TTLEVLQLFPINIK Unmodified 1627.9549 0.95489429 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 88.533 88.533 3 4.3117E-05 26867 TMT1-8 86.291 62.304 30.565 51.379 49.294 59.523 49.599 29.499 29 51 51 58 51 29 1 1 1 1 1 1 4282.8 18370 1977 18152 28160 36381 36381 1 TTLLHMLKDDR Unmodified 1341.7075 0.70747015 2721 Q9NR31;Q9Y6B6 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 0 0 0 0 1 8 0 1 52.087 52.087 4 0.0020497 14446 TMT1-7 79.201 53.19 199.38 226.84 201.51 127.66 128.58 288.41 188 229 205 130 138 274 1 1 1 1 1 1 14961 18371 2721 18153 28161 36382 36382 1 TTLLPGLLK Unmodified 954.61137 0.61136815 2740 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 0 9 0 1 67.228 67.228 3 0.0028766 18545 TMT1-8 76.827 51.904 61.747 56.987 33.605 36.289 56.127 83.678 58 58 36 36 58 80 1 1 1 1 1 1 5525.6 18372 2740 18154 28162 36383 36383 1 TTLLYFYQQLR Unmodified 1444.7715 0.77145062 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 9 0 1 73.368 73.368 2 2.5881E-05 21002 TMT1-8 97.277 56.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18373 1770 18155 28163 36384 36384 1 TTLPTFQSPEFSVTR Unmodified 1709.8625 0.86245047 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 7 0 1 63.611 63.611 3 2.2754E-05 18898 TMT1-6 69.403 28.678 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18374 3038 18156 28164 36385 36385 1 TTLTAAITK Unmodified 918.5386 0.53859714 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 8 0 1 49.949 49.949 2 0.00023152 13532 TMT1-7 144.5 101.47 528.97 746.26 452.46 363.93 660.58 776.39 499 742 477 369 673 746 2 2 2 2 2 2 73316 18375 1180 18157 28165 36386;36387 36386 2 TTNFAGILSQGLR Unmodified 1376.7412 0.74121312 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 1 65.454 65.454 2 8.2877E-16 17866 TMT1-8 153.49 114.72 77.099 147.72 81.62 73.227 90.253 137.07 73 145 87 73 94 131 1 1 1 1 1 1 18329 18376 606 18158 28166 36388 36388 1 TTNPTAK Unmodified 731.38137 0.38136821 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 0.5 1 1 28.874 28.874 2 0.0055078 5804 TMT1-5 134.15 75.983 745.09 270.62 600.73 420.6 548.23 316.95 699 311 591 427 553 312 2 2 2 2 2 2 46887 18377 3010 18159 28167;28168 36389;36390 36390 2 TTPATELDAWLAK Unmodified 1415.7296 0.72964538 2636 Q9H3H3-1;Q9H3H3;Q9H3H3-3 C11orf68 UPF0696 protein C11orf68 yes no 0 0 0 0 0 6 0 1 71.917 71.917 2 7.9449E-05 22789 TMT1-5 103.43 57.46 22.921 59.078 65.132 34.527 49.942 52.941 22 58 65 36 51 51 1 1 1 1 1 1 6040.4 18378 2636 18160 28169 36391 36391 1 TTPDVIFVFGFR Unmodified 1397.7343 0.73433683 1449 P62847-2;P62847-3;P62847;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 0 9 0 1 80.207 80.207 2 0.0031987 23659 TMT1-8 72.434 37.474 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18379 1449 18161 28170 36392 36392 1 TTPGREEAR Unmodified 1015.5047 0.50467125 1633 Q0VD83;Q0VD83-3 APOBR Apolipoprotein B receptor yes no 0 0 0 0 1 2 0 1 17.948 17.948 3 0.027241 3273 TMT1-1 61.582 11.542 3.1594 6.0899 4.8499 4.0138 3.6737 9.4892 3 6 5 4 4 9 1 1 1 1 1 1 411.95 18380 1633 18162 28171 36393 36393 1 TTPIEAASSGTR Unmodified 1189.5939 0.59388018 701 P14317 HCLS1 Hematopoietic lineage cell-specific protein yes yes 0 0 0 0 0 4 0 1 34.978 34.978 2 0.0052715 8352 TMT1-3 78.043 48.956 54.345 34.061 34.625 45.098 49.456 52.955 51 36 36 44 51 51 1 1 1 1 1 1 7667.2 18381 701 18163 28172 36394 36394 1 TTPPMLDSDGSFFLYSK Unmodified 1904.8866 0.88661631 421 P01859 IGHG2 Ig gamma-2 chain C region yes yes 0 0 0 0 0 7 0 1 75.403 75.403 2 0.0030424 23542 TMT1-6 51.939 40.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18382 421 18164 28173 36395 36395 1 TTPPVLDSDGSFFLYSK Unmodified 1872.9145 0.91454562 420 P0DOX5;P01857 IGHG1 Ig gamma-1 chain C region yes no 0 0 0 0 0 7 0 3 74.247 74.247 2;3 4.459E-18 23048 TMT1-6 132.06 91.118 207.49 291.86 225.48 156.8 188.66 266.45 196 291 232 159 196 255 3 3 3 3 3 3 139870 18383 420 18165 28174;28175;28176 36396;36397;36398;36399 36396 4 TTPQTLSNLCLK Unmodified 1374.7177 0.71770049 2898 Q9UKV8-2;Q9UKV8 AGO2 Protein argonaute-2 yes no 0 0 0 0 0 8 0 1 56.229 56.229 3 0.0027751 16068 TMT1-7 53.136 29.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18384 2898 18166 28177 36400 36400 1 TTPSVVAFTADGER Unmodified 1449.71 0.70997257 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 51.696 51.696 2 1.8119E-21 14983 TMT1-3 167.83 130.49 199.74 301.41 258.68 274.04 242.57 306.48 189 300 268 269 254 294 2 2 2 2 2 2 54142 18385 1058 18167 28178;28179 36401;36402 36401 2 TTPSYVAFTDTER Unmodified 1486.694 0.69398816 641;618;754 P11142;P11142-2;P54652;P17066;P48741;P0DMV8;P0DMV9;P0DMV8-2 HSPA8;HSPA2;HSPA6;HSPA7;HSPA1A;HSPA1B Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 0 4.38 1.73 1 1 2 2 1 1 50.511 50.511 2;3 4.7615E-37 14204 TMT1-4 215.04 117.47 834.78 970.87 803.29 652.42 946.8 1041.1 787 978 827 657 968 1002 5 5 5 5 5 5 1055200 18386 641;754;618 18168 28180;28181;28182;28183;28184;28185;28186;28187 36403;36404;36405;36406;36407;36408;36409;36410 36407 8 TTQEEQLR Unmodified 1003.4934 0.49343786 668 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 0 2 0 1 28.121 28.121 2 0.0018295 6262 TMT1-1 83.998 29.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18387 668 18169 28188 36411 36411 1 TTQFSCTLGEK Unmodified 1270.5864 0.58635197 1554 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 0 0 6 0 1 47.837 47.837 2 0.0023753 13327 TMT1-5 93.162 45.224 46.362 104.49 54.315 43.5 72.051 67.234 44 102 58 44 73 65 1 1 1 1 1 1 10125 18388 1554 18170 28189 36412 36412 1 TTQLLFLK Unmodified 962.58007 0.58006802 327 O94874;O94874-2;O94874-3 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 0 9 0 1 64.887 64.887 2 0.0067836 17630 TMT1-8 99.136 45.426 92.128 139.16 87.591 119.06 133.15 166.76 87 138 94 116 138 160 1 1 1 1 1 1 7272.6 18389 327 18171 28190 36413 36413 1 TTQQIDLQGPGPWGFR Acetyl (Protein N-term) 1841.906 0.90604662 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 1 0 0 0 6 0.816 1 1 1 75.223 75.223 2;3 8.3038E-30 23946 TMT1-4 145.89 133.53 85.918 78.709 100.57 104.18 69.721 84.356 81 81 102 102 74 81 4 4 4 4 4 4 163340 18390 41 18172 28191;28192;28193 36414;36415;36416;36417;36418 36415 5 TTQVPQFILDDFIQNDR Unmodified 2049.0167 0.016719282 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 5.5 0.5 1 1 80.255 80.255 3 2.2577E-07 26079 TMT1-5 94.384 73.431 84.689 84.825 121.58 134.4 81.467 97.879 80 87 123 131 87 94 3 3 3 3 3 3 32804 18391 1619 18173 28194;28195 36419;36420;36421 36421 3 TTSDLLLVMSNLYSLNAGSLTMSEK Unmodified 2687.3398 0.33976926 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 0 9 0 1 96.911 96.911 3 1.8043E-29 29896 TMT1-8 109.41 92.612 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18392 1910 18174 28196 36422 36422 1 TTSDYFLLQVLLK Unmodified 1539.8548 0.8548459 2837 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 0 0 0 9 0 1 89.212 89.212 3 3.603E-05 27138 TMT1-8 95.401 57.72 30.818 35.895 19.769 38.745 27.519 30.129 29 36 22 37 29 29 1 1 1 1 1 1 5833.3 18393 2837 18175 28197 36423 36423 1 TTSGALFPSLVPGSR Acetyl (N-term) 1530.8042 0.80420731 1884 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 1 0 0 0 0 7 0 1 76.639 76.639 2 2.4137E-09 24027 TMT1-6 54.683 36.458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18394 1884 18176 28198 36424 36424 1 TTSGIHPK Unmodified 839.45012 0.45011648 448 P02775 PPBP Platelet basic protein;Connective tissue-activating peptide III;TC-2;Connective tissue-activating peptide III(1-81);Beta-thromboglobulin;Neutrophil-activating peptide 2(74);Neutrophil-activating peptide 2(73);Neutrophil-activating peptide 2;TC-1;Neutrophil-activating peptide 2(1-66);Neutrophil-activating peptide 2(1-63) yes yes 0 0 0 0 0 6.2 2.79 1 1 1 1 1 27.976 27.976 3 0.0012226 5396 TMT1-5 107.01 55.672 8401.4 11528 9193.6 7766.3 11867 10484 7935 11511 9495 7811 12030 10153 12 12 12 12 12 12 1178600 18395 448 18177 28199;28200;28201;28202;28203 36425;36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436 36428 12 TTSLILPGIIK Unmodified 1154.7275 0.72746054 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 9 0 1 70.206 70.206 3 0.002323 19715 TMT1-8 69.979 38.045 61.493 72.471 63.06 58.624 53.781 122.12 58 73 65 58 58 116 1 1 1 1 1 1 6442.4 18396 1564 18178 28204 36437 36437 1 TTSNDIVEIFTVLGIEAVR Unmodified 2076.1103 0.11028532 880 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 0 7 0 1 97.979 97.979 3 0.0062488 31797 TMT1-6 47.814 21.69 0 14.896 0 0 15.69 0 0 14 0 0 15 0 0 1 0 0 1 0 1398.9 18397 880 18179 28205 36438 36438 1 TTSQVRPR Unmodified 943.51993 0.51992738 449;636 P02776;P10720 PF4;PF4V1 Platelet factor 4;Platelet factor 4, short form;Platelet factor 4 variant;Platelet factor 4 variant(4-74);Platelet factor 4 variant(5-74);Platelet factor 4 variant(6-74) no no 0 0 0 0 1 6.2 2.79 1 1 1 1 1 19.029 19.029 3 0.00019044 3570 TMT1-5 150.36 79.443 1247.9 1418.5 1320.6 1140.8 1524.7 1529.9 1177 1433 1352 1142 1558 1476 15 15 15 15 15 15 252460 18398 449;636 18180 28206;28207;28208;28209;28210 36439;36440;36441;36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452;36453 36442 15 TTTTNTQVEGDDEAAFLER Unmodified 2096.9498 0.94982151 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 2 0 3 52.309 52.309 2;3;4 1.9525E-36 15767 TMT1-1 166.3 142.29 123.06 128.79 127.12 140.76 132.92 144.38 116 130 131 138 138 139 3 2 3 3 3 3 159210 18399 1597 18182 28211;28212;28213 36454;36455;36456 36454 3 TTVGSVK Unmodified 690.3912 0.39120462 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 0 7 0 1 35.034 35.034 2 0.038681 7580 TMT1-6 86.794 16.795 69.021 79.558 54.283 75.231 70.299 75.812 65 80 58 73 73 73 1 1 1 1 1 1 6973.4 18400 2569 18183 28214 36457 36457 1 TTVGVDGSLYK Unmodified 1138.587 0.58700389 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 6 0 2 49.988 49.988 2;3 0.011756 14088 TMT1-5 60.161 44.901 245.73 383.09 214.89 291.54 264.25 321.85 232 379 233 283 276 309 2 2 2 2 2 2 69199 18401 787 18184 28215;28216 36458;36459 36458 2 TTVLAMDQVPR Unmodified 1229.6438 0.64380726 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 6 0 1 51.469 51.469 2 3.7153E-05 14730 TMT1-5 93.258 55.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18402 1702 18185 28217 36460 36460 1 TTVVAAAAFLDAFQK Unmodified 1551.8297 0.82969378 167 O43312-4;O43312;O43312-5 MTSS1 Metastasis suppressor protein 1 yes no 0 0 0 0 0 9 0 1 82.268 82.268 3 3.9111E-06 24441 TMT1-8 93.478 67.12 38.188 27.434 50.688 59.618 40.14 91.597 36 29 51 58 44 87 1 1 1 1 1 1 8589.8 18403 167 18186 28218 36461 36461 1 TTVVAQLK Unmodified 858.51747 0.51746776 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 8 0 1 47.001 47.001 2 8.8275E-08 12412 TMT1-7 172.15 64.829 200.5 253.87 171.37 208.92 204.26 229.76 189 254 182 204 212 221 1 1 1 1 1 1 23935 18404 1353 18187 28219 36462 36462 1 TTVVYPATEK Unmodified 1107.5812 0.58119023 2379 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 0 5 0 1 44.278 44.278 2 0.0086851 11759 TMT1-4 86.18 54.246 68.811 94.084 77.315 73.025 114.62 97.999 65 94 80 73 116 95 2 2 2 2 2 2 5412.3 18405 2379 18188 28220 36463;36464 36463 2 TTWGDGGENSPCNVVSK Unmodified 1806.7843 0.7842765 45 O00161 SNAP23 Synaptosomal-associated protein 23 yes yes 0 0 0 0 0 5 0 1 50.447 50.447 3 3.8033E-10 14147 TMT1-4 112.67 96.902 177.1 208.57 174.91 168.99 165.65 250.05 167 210 181 167 174 239 2 2 2 2 2 2 42473 18406 45 18189 28221 36465;36466 36465 2 TTYLEFIQQNEER Acetyl (N-term) 1711.8053 0.80532952 1857 Q15436 SEC23A Protein transport protein Sec23A yes yes 1 0 0 0 0 3 0 1 77.128 77.128 2 4.0577E-56 25832 TMT1-2 127.76 121.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18407 1857 18190 28222 36467 36467 1 TTYLVLDEADR Unmodified 1294.6405 0.64049603 764 P17844-2;P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 0 3 0 1 55.591 55.591 2 1.1029E-06 17432 TMT1-2 141.95 89.374 76.949 139.74 113.58 71.035 105.55 151.56 73 138 116 73 109 145 1 1 1 1 1 1 27587 18408 764 18191 28223 36468 36468 1 TVAAPSVFIFPPSDEQLK Unmodified 1945.0197 0.019679395 418 P01834 IGKC Ig kappa chain C region yes yes 0 0 0 0 0 7 0 2 74.601 74.601 3;4 8.6214E-15 23220 TMT1-6 127.3 107.97 355.2 540.09 438.07 352.84 482.1 536.3 336 537 451 355 494 516 7 7 7 7 7 7 58215 18409 418 18192 28224;28225 36469;36470;36471;36472;36473;36474;36475 36470 7 TVAEGHGDTLYVGTTR Unmodified 1675.8166 0.81656291 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 3 0 1 38.399 38.399 3 1.1988E-06 10646 TMT1-2 95.677 80.515 46.372 73.224 79.05 64.716 85.99 59.374 44 73 80 65 87 58 1 1 1 1 1 1 12788 18410 374 18193 28226 36476 36476 1 TVAELEAEK Unmodified 988.50769 0.50769094 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 2.75 0.829 2 1 1 48.775 48.775 2;3 0.00041527 13581 TMT1-3 105.4 74.71 277.33 339.32 350.87 282.05 338.13 376.24 262 342 356 283 348 362 4 4 4 4 4 4 55272 18411 1702 18194 28227;28228;28229;28230 36477;36478;36479;36480 36480 4 TVAGQDAVIVLLGTR Unmodified 1511.8671 0.86714192 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 7.5 0.5 1 1 70.345 70.345 2;3 2.8701E-05 21572 TMT1-7 89.642 55.776 38.611 96.786 101.15 72.195 83.264 128.74 37 95 102 73 87 123 2 2 2 2 2 2 19614 18412 946 18195 28231;28232 36481;36482 36482 2 TVALSSAGVLSPMVAMLGAVAAQEVLK Unmodified 2612.4281 0.42813076 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 9 0 2 103.71 103.71 3;4 7.157E-19 32355 TMT1-8 91.643 68.99 46.871 35.756 26.979 45.279 64.09 83.451 44 37 29 44 66 80 2 2 2 2 2 2 7635.2 18413 1081 18196 28233;28234 36483;36484;36485 36483 3 TVAMMVPDRQVHYDFGLR 2 Oxidation (M) 2166.035 0.035028658 2424 Q96JB1-2 yes yes 0 0 2 0 1 5 0 1 63.295 63.295 3 0.019781 19209 TMT1-4 41.871 32.456 38.105 43.391 51.153 27.698 50.512 45.463 36 44 51 29 51 44 1 1 1 1 1 1 20458 18414 2424 18197 28235 36486 36486 292;293 1 TVAPTECS Unmodified 863.36948 0.3694829 22;620 P0DOX8;B9A064;P0CG04;P0DOY3;P0DOY2 IGLL5;IGLC1 Immunoglobulin lambda-like polypeptide 5;Ig lambda-1 chain C regions no no 0 0 0 0 0 3 0 1 35.688 35.688 2 0.047404 9547 TMT1-2 75.311 57.544 30.529 66.39 42.555 20.558 50.584 52.923 29 65 44 22 51 51 1 1 1 1 1 1 11702 18415 22;620 18198 28236 36487 36487 1 TVASPGVTVEEAVEQIDIGGVTLLR Unmodified 2552.3697 0.36974748 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 5 0 2 89.115 89.115 3;4 1.4818E-30 29337 TMT1-4 133.65 123.99 39.309 60.534 56.213 60.893 78.784 91.56 37 59 58 59 81 88 3 3 4 3 4 4 9917.4 18416 981 18199 28237;28238 36488;36489;36490;36491 36489 4 TVATLSILGTR Unmodified 1130.6659 0.66592292 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 9 0 1 59.322 59.322 2 2.2998E-06 15444 TMT1-8 123.6 66.937 116.04 99.541 69.531 65.039 99.005 136.82 109 102 73 65 102 131 1 1 1 1 1 1 9499.4 18417 2642 18200 28239 36492 36492 1 TVAVITSDGR Unmodified 1017.5455 0.54547343 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 0 5 0 1 40.766 40.766 2 4.8485E-13 10351 TMT1-4 150.17 128.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18418 368 18201 28240 36493 36493 1 TVAVWDSETGER Unmodified 1348.6259 0.62590859 2394 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 0 0 4 0 1 48.158 48.158 2 4.8337E-05 13550 TMT1-3 89.356 42.894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18419 2394 18202 28241 36494 36494 1 TVAYTEQK Unmodified 938.47091 0.4709115 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 5 0 2 37.114 37.114 2;3 0.0038186 8874 TMT1-4 129.47 49.997 732.42 1349.6 1094.2 765.38 1050.6 1432.6 695 1332 1121 778 1085 1372 3 3 3 3 3 3 304760 18420 955 18203 28242;28243 36495;36496;36497 36495 3 TVCDAAEK Unmodified 892.39603 0.396032 231 O60664-4;O60664-3;O60664 PLIN3 Perilipin-3 yes no 0 0 0 0 0 4 0 1 34.453 34.453 2 0.0087458 8118 TMT1-3 101.43 20.993 131.11 82.445 76.693 95.606 136.36 104.84 123 87 80 94 138 102 1 1 1 1 1 1 11143 18421 231 18204 28244 36498 36498 1 TVDFTQDSNYLLTGGQDK Unmodified 2000.9327 0.93271488 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 5 0 1 67.743 67.743 3 2.4676E-08 20950 TMT1-4 101.67 84.59 168.93 240.71 258.31 197.51 186.78 297.41 160 241 261 198 197 284 1 1 1 1 1 1 31790 18422 3000 18205 28245 36499 36499 1 TVDGPSGK Unmodified 759.37628 0.37628284 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 5.5 1.12 1 1 1 1 32.287 32.287 2 0.0048876 6896 TMT1-4 121.85 74.783 3498.8 1726.4 2719.5 2223.8 3320.1 1805.9 3284 1887 2717 2240 3331 1783 6 6 6 6 6 6 657090 18423 472 18206 28246;28247;28248;28249 36500;36501;36502;36503;36504;36505;36506 36502 7 TVDISMILSEAIR Unmodified 1446.7752 0.77521537 216 O60256-3;O60256;O60256-4;O60256-2 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 0 7 0 1 83.866 83.866 3 4.8529E-05 26824 TMT1-6 99.011 62.029 23.45 14.14 14.254 22.655 28.772 15.169 22 15 15 22 29 15 1 1 1 1 1 1 4120.6 18424 216 18207 28250 36507 36507 1 TVDLKPDWGK Unmodified 1157.6081 0.60807369 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 7.33 0.471 2 1 53.045 53.045 3;4 0.00013963 14691 TMT1-6 119.27 77.065 1443.5 2219.8 1671.4 1566.4 1843.7 2150.8 1365 2204 1739 1556 1902 2067 4 4 4 4 4 4 90797 18425 986 18208 28251;28252;28253 36508;36509;36510;36511 36508 4 TVDLLCSIFPCEVAQQLWQGQVVQAK Unmodified 3016.515 0.51504828 1564 Q02108-2;Q02108 GUCY1A3 Guanylate cyclase soluble subunit alpha-3 yes no 0 0 0 0 0 9 0 1 94.051 94.051 4 2.4619E-05 28927 TMT1-8 52.359 40.835 0 22.941 27.95 46.053 19.854 30.347 0 22 29 44 22 29 0 1 1 1 1 1 3558.8 18426 1564 18209 28254 36512 36512 1 TVDLSSHLAK Unmodified 1069.5768 0.57677356 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 7.33 1.25 1 1 1 44.348 44.348 3 6.9853E-06 11310 TMT1-6 148.96 77.344 725.02 867.06 582.07 572.81 824.56 991.3 683 870 613 570 846 952 4 4 4 4 4 4 87664 18427 478 18210 28255;28256;28257 36513;36514;36515;36516 36514 4 TVDNFVALATGEK Unmodified 1363.6983 0.69834526 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 4.67 2.62 1 1 1 68.844 68.844 2;3 2.5636E-08 20925 TMT1-6 119.87 98.637 1162.9 1614.6 1199.8 1000.8 1274 1555.2 1098 1610 1245 1003 1313 1493 5 5 5 5 5 5 293580 18428 858 18211 28258;28259;28260 36517;36518;36519;36520;36521 36521 5 TVDVAAEK Unmodified 831.4338 0.43379771 1515 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 0 4 0 1 40.154 40.154 2 0.0057253 10402 TMT1-3 114.89 42.402 235.03 341.82 244.66 214.5 314.63 298.03 222 340 255 215 320 288 1 1 1 1 1 1 26074 18429 1515 18212 28261 36522 36522 1 TVDWALAEYMAFGSLLK Unmodified 1913.9597 0.95972167 1566 Q02218;Q02218-2;Q9ULD0-3;Q9ULD0-2;Q9ULD0 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 0 0 0 0 0 9 0 1 98.48 98.48 4 0.00055056 30500 TMT1-8 58.09 36.839 23.427 29.186 5.3834 7.2137 6.1913 23.275 22 29 7 7 7 22 1 1 1 1 1 1 1633.6 18430 1566 18213 28262 36523 36523 1 TVDYTGQAK Unmodified 981.47673 0.47672516 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 5 0 1 38.352 38.352 3 0.0010802 9378 TMT1-4 96.948 48.386 268.22 300.51 290.57 231.62 246.34 497.19 253 304 296 232 262 473 1 1 1 1 1 1 29838 18431 288 18214 28263 36524 36524 1 TVEAEAAHGTVTR Unmodified 1340.6684 0.66844211 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 4 1 1 1 28.597 28.597 3 3.0251E-06 6725 TMT1-2 112.42 83.696 93.264 92.847 116.32 70.718 113.7 127.87 88 95 116 73 116 123 3 3 3 3 3 3 16767 18432 307 18215 28264;28265 36525;36526;36527 36525 3 TVEALYK Unmodified 822.44872 0.4487195 1537 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 0 6 0 1 47.335 47.335 2 0.010436 13060 TMT1-5 108.09 63.951 718.63 1010.4 813.96 737.05 887.85 969.24 679 1008 842 734 913 933 1 1 1 1 1 1 128680 18433 1537 18216 28266 36528 36528 1 TVEETQVPEISGVAR Unmodified 1613.8261 0.82606496 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 3 0 1 51.22 51.22 3 0.024757 15735 TMT1-2 45.438 12.491 46.673 57.87 41.58 52.085 62.73 83.49 44 58 44 51 65 80 1 1 1 1 1 1 9262.9 18434 2256 18217 28267 36529 36529 1 TVEEVLGHFGVNESTGLSLEQVK Unmodified 2471.2544 0.25438337 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 6.5 0.5 1 1 73.465 73.465 4 2.5141E-10 23452 TMT1-5 90.968 72.812 184.84 225.98 121.05 139.19 177.25 165.5 174 226 131 137 181 160 3 3 3 3 3 3 21472 18435 748 18218 28268;28269 36530;36531;36532 36531 3 TVEGAGSIAAATGFVK Unmodified 1477.7777 0.77765821 1054 P37840-2;P37840;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 0 7 0 1 61.274 61.274 3 6.3519E-17 18040 TMT1-6 141.34 117.67 1046.9 1248 807.62 765.23 920.71 1193.2 986 1252 852 760 953 1144 3 3 3 3 3 3 205260 18436 1054 18219 28270 36533;36534;36535 36534 3 TVEGALK Unmodified 716.40685 0.40685468 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 5 0 1 40.454 40.454 2 0.027841 10217 TMT1-4 91.626 26.85 352.38 753.33 550.62 551.27 442.47 602.46 335 739 575 542 467 577 1 1 1 1 1 1 36399 18437 1913 18220 28271 36536 36536 1 TVEGVLIVHEHR Unmodified 1387.7572 0.75719754 204 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 0 5 0 1 38.411 38.411 4 8.2681E-06 9396 TMT1-4 109.72 102.15 99.316 145.3 136.66 77.152 113.91 112.94 94 145 138 80 116 109 1 1 1 1 1 1 6857.9 18438 204 18221 28272 36537 36537 1 TVEIVHIDIADR Unmodified 1379.7409 0.74087877 1166 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 0 4 0 1 54.826 54.826 3 4.8366E-06 16159 TMT1-3 113.69 79.002 99.334 192.84 93.341 111.17 127.8 120.01 94 189 102 109 131 116 1 1 1 1 1 1 30369 18439 1166 18222 28273 36538 36538 1 TVEKPPK Unmodified 797.4647 0.46470391 1546;651 Q01082;Q01082-3;Q01082-2;O15020-2;O15020;P11277-2;P11277;P11277-3 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 0 0 0 0 1 7 0 1 33.715 33.715 3 0.026508 7054 TMT1-6 74.127 18.744 207.98 224.14 201.01 190.09 239.7 197.83 196 227 207 189 244 192 1 1 1 1 1 1 18445 18440 1546;651 18223 28274 36539 36539 1 TVELQGK Unmodified 773.42832 0.42831841 1372 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 0 5 0 1 40.593 40.593 3 0.0040862 10281 TMT1-4 62.717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18441 1372 18224 28275 36540 36540 1 TVEQTATTTNK Unmodified 1192.5935 0.59354583 571 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' yes yes 0 0 0 0 0 4 0 1 33.387 33.387 3 0.0045069 7719 TMT1-3 69.864 56.883 85.016 101.92 52.185 90.406 83.746 90.352 80 102 58 87 87 87 1 1 1 1 1 1 7585.4 18442 571 18225 28276 36541 36541 1 TVESITDIR Unmodified 1032.5451 0.54513908 652 P11279 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 0 0 0 0 0 4 0 1 48.125 48.125 2 1.2465E-05 13494 TMT1-3 155.88 73.16 592.66 891.21 626.29 582.75 679.12 827.03 560 885 655 579 702 794 2 2 2 2 2 2 123950 18443 652 18226 28277 36542;36543 36542 2 TVEVAEGEAVR Unmodified 1158.5881 0.58806652 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 2 0 1 39.779 39.779 2 6.172E-12 10832 TMT1-1 175.93 110.69 61.287 118.31 58.913 90.004 83.765 90.352 58 116 65 87 87 87 1 1 1 1 1 1 14901 18444 2107 18227 28278 36544 36544 1 TVEVLEPEVTK Unmodified 1242.6707 0.67073352 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 4 0 1 55.504 55.504 3 2.9064E-06 16417 TMT1-3 122.69 105.22 108.13 137.79 104.54 103 120.05 112.77 102 138 109 102 123 109 1 1 1 1 1 1 27791 18445 2079;2399 18228 28279 36545 36545 1 TVEVPFKGDVEHTIR Unmodified 1725.905 0.90498399 2832 Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR2 GMP reductase 2 yes no 0 0 0 0 1 6 0 1 50.275 50.275 4 0.0012352 14247 TMT1-5 67.846 45.632 114.59 185.09 240.63 141.1 161.99 180.86 109 185 239 145 167 174 1 1 1 1 1 1 14036 18446 2832 18229 28280 36546 36546 1 TVEVPYKGDVENTILDILGGLR Unmodified 2400.29 0.2900406 1047 P36959 GMPR GMP reductase 1 yes yes 0 0 0 0 1 7.5 0.5 1 1 92.194 92.194 3 4.5889E-06 29927 TMT1-6 73.448 49.161 69.955 86.655 71.536 42.621 64.212 83.448 66 87 73 44 66 80 3 3 3 3 3 3 12637 18447 1047 18230 28281;28282 36547;36548;36549 36548 3 TVEYLHAQGVVHR Unmodified 1507.7896 0.7895603 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 5.5 0.5 1 1 35.963 35.963 4 8.7636E-12 8410 TMT1-4 147.26 138.94 160.74 241.31 192.09 105.29 127.26 143.48 152 240 196 109 131 138 2 2 2 2 2 2 13921 18448 1256 18231 28283;28284 36550;36551 36550 2 TVFAEHISDECK Unmodified 1434.6449 0.64492948 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 0 4 0 1 44.695 44.695 3 0.0013761 12187 TMT1-3 76.522 56.426 122.13 236.47 192.01 166.72 232.1 206.58 116 233 198 167 236 200 1 1 1 1 1 1 14793 18449 1061 18232 28285 36552 36552 1 TVFDEAIR Unmodified 949.4869 0.48689592 717;1466 P15153;P63000;P63000-2;P60763 RAC2;RAC1;RAC3 Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 no no 0 0 0 0 0 4 0 1 51.133 51.133 2 3.7281E-05 14732 TMT1-3 162.31 57.037 2463.5 4155.7 2810 2818.9 3411.9 3787.1 2331 4106 2955 2791 3510 3644 3 3 3 3 3 3 546660 18450 717;1466 18233 28286 36553;36554;36555 36554 3 TVFETLDIGWQLLR Unmodified 1689.909 0.90900673 828 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 0 8 0 2 92.101 92.101 2;3 3.9184E-17 29893 TMT1-7 133.15 114.09 7.2698 22.56 21.411 22.509 13.864 23.056 7 22 22 22 15 22 1 1 1 1 1 1 5252.4 18451 828 18234 28287;28288 36556;36557 36557 2 TVFFESLER Unmodified 1126.5659 0.56587452 2 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 6 0 1 62.105 62.105 2 0.015924 18984 TMT1-5 80.787 73.892 108.1 152.81 97.43 72.289 90.039 144.54 102 152 102 73 94 138 1 1 1 1 1 1 21802 18452 2 18235 28289 36558 36558 1 TVFGVEPDLTR Unmodified 1232.6401 0.6401021 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 5 0 1 58.416 58.416 2 2.0889E-08 17260 TMT1-4 159.34 100.52 214.61 370.12 225.56 243.09 249.58 387.3 203 365 240 239 262 370 2 2 2 2 2 2 58153 18453 2434 18236 28290 36559;36560 36559 2 TVFYYYGSDKDK Unmodified 1484.6824 0.68236084 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 1 7.5 0.5 1 1 51.919 51.919 3 0.002379 14232 TMT1-6 76.728 55.995 429.23 519.92 455.39 322.88 450.75 636.33 405 523 465 328 466 609 2 2 2 2 2 2 56323 18454 289 18237 28291;28292 36561;36562 36561 2 TVGAALDILCPSGPIK Unmodified 1610.8702 0.87017839 739 P16278;P16278-3;P16278-2 GLB1 Beta-galactosidase yes no 0 0 0 0 0 8 0 1 71.533 71.533 3 1.6089E-08 22100 TMT1-7 105.46 76.12 68.864 62.933 94.717 64.368 54.836 83.715 65 65 94 65 58 80 1 1 1 1 1 1 11012 18455 739 18238 28293 36563 36563 1 TVGIDDLTGEPLIQR Unmodified 1625.8625 0.86245047 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 4 0 1 65.444 65.444 3 1.9385E-06 20295 TMT1-3 102.5 59.123 23.368 21.469 21.75 14.555 28.888 22.628 22 22 22 15 29 22 1 1 1 1 1 1 15999 18456 2881 18239 28294 36564 36564 1 TVGLFLQGGK Unmodified 1018.5811 0.58113065 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 2 60.503 60.503 2;3 0.00043457 15993 TMT1-8 112.8 41.946 146.48 149.49 141.29 132.25 133.35 143.3 138 152 145 131 138 138 2 2 2 2 2 2 68864 18457 1112 18240 28295;28296 36565;36566 36566 2 TVGLQSR Unmodified 759.4239 0.42390173 1948 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 0 6 0 1 31.326 31.326 2 0.0047842 6749 TMT1-5 82.241 5.4664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18458 1948 18241 28297 36567 36567 1 TVGMLSNMIAFYDMAR Unmodified 1818.8467 0.84668253 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 9 0 1 84.643 84.643 3 2.6617E-06 25377 TMT1-8 88.311 66.761 23.242 28.672 36.89 5.0435 21.74 30.294 22 29 36 7 22 29 1 1 1 1 1 1 5002.1 18459 1057 18242 28298 36568 36568 1 TVGQLYK Unmodified 807.44905 0.44905385 1019;1020;1029;2091 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH11;MYH14 Myosin-9;Myosin-10;Myosin-11;Myosin-14 no no 0 0 0 0 0 7.33 0.471 2 1 44.52 44.52 2;3 0.0077285 11453 TMT1-6 124.37 42.992 3636.5 5091.6 5232.8 3945.6 4809.4 5445.4 3442 5098 5298 3978 4950 5237 3 3 3 3 3 3 1224100 18460 1019;1020;1029;2091 18243 28299;28300;28301 36569;36570;36571 36570 3 TVGQLYKEQLAK Unmodified 1376.7664 0.76636524 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 8 0 2 49.305 49.305 3;4 6.9588E-08 13322 TMT1-7 127.02 85.397 585.28 846.93 822.19 714.78 535.11 945.2 554 846 839 708 574 901 2 2 2 2 2 2 69523 18461 1019 18244 28302;28303 36572;36573 36573 2 TVGSDTFYSFK Unmodified 1250.5819 0.58191851 411 P01042-3;P01042-2;P01042 KNG1 Kininogen-1;Kininogen-1 heavy chain;T-kinin;Bradykinin;Lysyl-bradykinin;Kininogen-1 light chain;Low molecular weight growth-promoting factor yes no 0 0 0 0 0 7 0 1 59.759 59.759 2 0.0022482 17403 TMT1-6 93.843 52.268 37.665 119.88 60.324 58.9 47.758 83.917 36 116 65 58 51 80 1 1 1 1 1 1 9327.3 18462 411 18245 28304 36574 36574 1 TVGVEPAADGK Unmodified 1042.5295 0.52948901 1134 P46779-4;P46779-5;P46779;P46779-2;P46779-3 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 0 4 0 1 40.408 40.408 2 0.00018374 10483 TMT1-3 109.16 72.631 153.35 214.1 194.95 127.32 225.85 228.08 145 214 198 131 229 220 1 1 1 1 1 1 25884 18463 1134 18246 28305 36575 36575 1 TVHAGEVGSAEVVK Unmodified 1381.7201 0.72014333 403 P00813 ADA Adenosine deaminase yes yes 0 0 0 0 0 4 0 1 38.476 38.476 3 2.6145E-07 9725 TMT1-3 105.41 82.038 92.069 138.99 97.685 86.997 120.79 112.75 87 138 102 87 123 109 1 1 1 1 1 1 9265.8 18464 403 18247 28306 36576 36576 1 TVHLYDNWIK Unmodified 1287.6612 0.66117189 6 A1L3X0 ELOVL7 Elongation of very long chain fatty acids protein 7 yes yes 0 0 0 0 0 7.5 0.5 1 1 55.994 55.994 3 9.8239E-05 15988 TMT1-7 115.23 86.905 269.74 286.55 228.88 250.75 296.64 316.67 254 290 239 247 305 305 2 2 2 2 2 2 27457 18465 6 18248 28307;28308 36577;36578 36578 2 TVHTEWTQR Unmodified 1156.5625 0.56252048 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 5.5 0.5 1 1 31.425 31.425 3 6.8738E-05 6623 TMT1-4 140.11 97.825 100.43 137.77 136.78 84.395 135.26 151.78 95 138 138 87 138 146 2 2 2 2 2 2 10832 18466 692 18249 28309;28310 36579;36580 36579 2 TVHYLPILFIDQLSNR Unmodified 1928.052 0.051982576 2431 Q96KA5-2;Q96KA5 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes no 0 0 0 0 0 9 0 1 74.93 74.93 3 1.5081E-05 21609 TMT1-8 76.151 53.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18467 2431 18250 28311 36581 36581 1 TVIDYNGER Unmodified 1065.5091 0.50908792 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 3 0 1 40.072 40.072 2 0.00015392 11291 TMT1-2 148.14 82.006 114.7 212.37 199.61 150.83 181.09 281.59 109 210 203 152 189 269 2 2 2 2 2 2 50607 18468 530 18251 28312 36582;36583 36582 2 TVIFVATGEGK Unmodified 1120.6128 0.61282471 349 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 0 7.5 0.5 1 1 56.725 56.725 2 1.8998E-11 16131 TMT1-6 167.67 104.51 245.64 376.39 234.38 203.22 249.35 264.71 232 373 247 203 256 255 2 2 2 2 2 2 39822 18469 349 18252 28313;28314 36584;36585 36584 2 TVIGCSGFHGDCLTLTK Unmodified 1864.8812 0.88115378 813 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 0 8 0 1 54.899 54.899 3 8.6439E-14 15561 TMT1-7 120.63 102.71 53.908 87.888 62.503 51.231 41.845 53.172 51 87 65 51 44 51 1 1 1 1 1 1 6968.5 18470 813 18253 28315 36586 36586 1 TVIGDHGDELFSVFGAPFLK Unmodified 2148.0892 0.089155943 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 8 0 1 82.943 82.943 4 9.8963E-14 26483 TMT1-7 111.33 102.72 37.59 95.923 93.239 56.656 62.776 76.027 36 94 94 58 65 73 1 1 1 1 1 1 19189 18471 853 18254 28316 36587 36587 1 TVIGPDGHK Unmodified 922.48723 0.48723027 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.43 2.06 1 2 2 1 1 34.214 34.214 3 8.3756E-05 7556 TMT1-4 137.95 82.512 4773 5810.6 5307.7 4374.7 5585.7 6907.1 4505 5847 5430 4388 5759 6629 11 11 11 11 11 11 787690 18472 437 18255 28317;28318;28319;28320;28321;28322;28323 36588;36589;36590;36591;36592;36593;36594;36595;36596;36597;36598 36590 11 TVIGPDGHKEVTK Unmodified 1379.7409 0.74087877 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 1 6.5 0.5 1 1 37.321 37.321 4 1.2522E-11 9026 TMT1-5 147.68 116.2 3290.5 4134.3 1966.2 2167.2 1509.4 5719.7 3097 4125 2151 2116 1726 5406 2 2 2 2 2 2 171910 18473 437 18256 28324;28325 36599;36600 36599 2 TVIGSVLLR Unmodified 956.60187 0.6018661 51 O00203-3;O00203 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 0 9 0 1 58.714 58.714 2 0.019309 15198 TMT1-8 76.478 37.641 115.2 143.6 174.38 105.24 186.42 187.63 109 145 174 109 189 181 1 1 1 1 1 1 11769 18474 51 18257 28326 36601 36601 1 TVIIEQSWGSPK Unmodified 1343.7085 0.70851601 638 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 0 7.5 0.5 2 2 58.358 58.358 2;3 5.2602E-25 16860 TMT1-6 196.16 130.85 578.87 876.58 793.04 625.63 718.05 976.22 548 873 810 628 746 935 5 5 5 5 5 5 161620 18475 638 18258 28327;28328;28329;28330 36602;36603;36604;36605;36606 36604 5 TVIPGMPTVIPPGLTR Unmodified 1647.9382 0.93819837 1866 Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 SF1 Splicing factor 1 yes no 0 0 0 0 0 9 0 1 72.371 72.371 3 6.2294E-08 20623 TMT1-8 97.767 69.254 30.481 27.403 83.601 26.063 34.626 53.378 29 29 80 29 36 51 1 1 1 1 1 1 6162.2 18476 1866 18259 28331 36607 36607 1 TVISQSLSK Unmodified 961.54441 0.5444108 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 8 0 1 46.801 46.801 2 1.9116E-13 12310 TMT1-7 182.39 152.92 206.84 264.14 359.08 206.89 298.1 271.85 196 267 356 214 303 263 1 1 1 1 1 1 44519 18477 1057 18260 28332 36608 36608 1 TVIVHGFTLGEK Unmodified 1299.7187 0.71868677 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 8 0 1 53.816 53.816 3 0.0025343 15077 TMT1-7 71.548 53.684 107.62 206.52 132.33 91.041 202.79 156.25 102 203 138 94 203 152 1 1 1 1 1 1 19466 18478 2741 18261 28333 36609 36609 1 TVIVNMVDVAK Unmodified 1187.6584 0.6583947 1307 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 0 7 0 1 63.45 63.45 2 1.3347E-07 18836 TMT1-6 115.33 63.378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18479 1307 18262 28334 36610 36610 1 TVIYEIPR Unmodified 989.55458 0.55458155 462 P04085-2;P04085 PDGFA Platelet-derived growth factor subunit A yes no 0 0 0 0 0 5 0 1 51.827 51.827 2 0.0063932 14609 TMT1-4 105.81 61.041 77.25 85.539 108.87 79.52 76.111 114.02 73 87 109 80 80 109 1 1 1 1 1 1 44786 18480 462 18263 28335 36611 36611 1 TVIYWLAEVK Unmodified 1220.6805 0.68051035 1228 P50583 NUDT2 Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] yes yes 0 0 0 0 0 9 0 1 77.772 77.772 3 0.0020171 22678 TMT1-8 74.841 47.099 54.25 42.431 43.509 28.726 20.101 46.33 51 44 44 29 22 44 1 1 1 1 1 1 6504.3 18481 1228 18264 28336 36612 36612 1 TVLDPVTGDLSDTR Unmodified 1487.7468 0.74675201 1850 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 0 3.5 0.5 1 1 58.38 58.38 2 2.5945E-10 17556 TMT1-3 127.78 86.782 68.74 78.778 102.12 71.171 76.495 114.01 65 80 102 72 80 109 2 2 2 2 2 2 17301 18482 1850 18265 28337;28338 36613;36614 36614 2 TVLDQQQTPSR Unmodified 1271.647 0.64697839 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 35.52 35.52 2 0.019294 8535 TMT1-3 72.434 55.408 30.844 20.856 28.262 38.372 20.464 22.868 29 22 29 37 22 22 1 1 1 1 1 1 3270.8 18483 1101 18266 28339 36615 36615 1 TVLELIK Unmodified 814.51641 0.51640513 942 P29728;P29728-2 OAS2 2'-5'-oligoadenylate synthase 2 yes no 0 0 0 0 0 7 0 1 64.729 64.729 2 0.0012219 19339 TMT1-6 100.19 8.2818 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18484 942 18267 28340 36616 36616 1 TVLELMNPEAQLPQVYPFAADLYQK Unmodified 2877.4623 0.46226766 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 92.455 92.455 4 0.00064613 29926 TMT1-7 48.685 35.23 14.702 29.382 28.899 14.405 14.237 23.046 14 29 29 15 15 22 1 1 1 1 1 1 10223 18485 1139 18268 28341 36617 36617 1 TVLGTPEVLLGALPGAGGTQR Unmodified 2006.116 0.1160394 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 8.5 0.5 1 1 76.219 76.219 3 3.9632E-18 23971 TMT1-7 121.56 104.27 99.693 123.68 91.675 71.641 84.609 90.328 94 124 95 72 87 87 2 2 2 2 2 2 66687 18486 1076 18269 28342;28343 36618;36619 36618 2 TVLHVLGDR Unmodified 1008.5716 0.5716286 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 43.034 43.034 3 0.00027605 10837 TMT1-6 119.68 73.255 686.29 843.68 800.16 716.62 797.52 977.15 648 849 819 713 826 938 7 7 7 7 7 7 316980 18487 377 18270 28344;28345;28346;28347;28348 36620;36621;36622;36623;36624;36625;36626 36624 7 TVLIMELINNVAK Unmodified 1456.8323 0.83233632 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 9 0 2 88.684 88.684 3;4 3.728E-29 26965 TMT1-8 190.78 118.78 350.29 499.64 395.39 418.77 482.54 587.45 331 498 412 413 499 564 4 4 4 4 4 4 83946 18488 508 18271 28349;28350 36627;36628;36629;36630 36628 4 TVLLSIQALLSAPNPDDPLANDVAEQWK Unmodified 3017.571 0.57096648 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 0 8 0 2 98.749 98.749 4;5 1.0556E-05 32288 TMT1-7 56.468 43.83 70.261 79.843 32.268 76.244 86.214 67.896 66 80 37 73 88 66 3 4 3 4 4 4 9103 18489 1377 18272 28351;28352 36631;36632;36633;36634 36633 4 TVLLSLQALLAAAEPDDPQDAVVANQYK Unmodified 2952.5444 0.54441738 1376 P61086;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 8.5 0.5 1 1 96.538 96.538 3;5 3.6844E-09 31555 TMT1-7 65.428 59.133 15.889 14.517 22.242 13.703 14.526 15.576 15 15 22 14 15 15 1 1 1 1 1 1 1566.9 18490 1376 18273 28353;28354 36635;36636 36635 2 TVLPFSQEFQR Unmodified 1350.6932 0.6932003 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 7 0 1 62.04 62.04 3 1.8026E-05 18243 TMT1-6 113.63 81.787 23.178 44.682 34.144 45.137 48.941 67.893 22 44 36 44 51 65 1 1 1 1 1 1 16500 18491 2079 18274 28355 36637 36637 1 TVLPFVNTHPDKLR Unmodified 1635.9097 0.90967544 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 1 9 0 1 50.671 50.671 4 1.833E-06 12061 TMT1-8 101.36 65.164 153.58 207.2 161.33 138.2 160.73 221.41 145 207 167 138 167 212 1 1 1 1 1 1 10845 18492 485 18275 28356 36638 36638 1 TVLVNADGEEVAMR Unmodified 1502.7399 0.73989249 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 0 3 0 1 52.054 52.054 3 0.0015355 16066 TMT1-2 66.826 64.993 46.696 42.825 50.391 44.576 27.251 30.136 44 44 51 44 29 29 1 1 1 1 1 1 4669.1 18493 1577 18276 28357 36639 36639 1 TVLWNPEDLIPLPIPK Unmodified 1844.0448 0.044771933 2939 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes yes 0 0 0 0 0 8.5 0.5 1 1 92.422 92.422 3 0.00049694 29923 TMT1-7 71.08 52.251 46.665 57.847 42.987 20.538 50.292 61.459 44 58 44 22 51 59 2 2 2 2 2 2 10701 18494 2939 18277 28358;28359 36640;36641 36640 2 TVMENFVAFVDK Unmodified 1398.6853 0.68533773 29 CON__P02769 yes yes 0 0 0 0 0 7 0 1 77.951 77.951 3 0.00034048 24516 TMT1-6 88.552 65.674 37.447 56.671 150.5 62.804 19.341 22.9 36 58 145 66 22 22 1 1 1 1 1 1 6878.2 + 18495 29 18278 28360 36642 36642 1 TVMIDVCTTCR Unmodified 1354.6043 0.60432699 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 50.017 50.017 2 1.9334E-16 14157 TMT1-5 180.09 164.82 38.037 58.313 49.906 35.588 41.758 76.626 36 58 51 36 44 73 1 1 1 1 1 1 10083 18496 471 18279 28361 36643 36643 1 TVMPYISTTPAK Unmodified 1307.6795 0.67952407 500 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 0 8 0 1 56.39 56.39 3 1.7027E-05 16092 TMT1-7 105.17 67.149 299.19 326.02 294.35 206.02 259.01 406.22 282 330 300 209 270 388 1 1 1 1 1 1 58609 18497 500 18280 28362 36644 36644 1 TVNLNLWDTAGQEEYDR Unmodified 2022.9283 0.92829821 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 4.5 0.5 1 1 67.042 67.042 2 4.0609E-09 20671 TMT1-4 108.06 91.53 39.103 50.665 57.572 43.7 51.08 37.984 37 51 58 44 52 37 2 2 2 2 2 2 17879 18498 1522 18281 28363;28364 36645;36646 36646 2 TVNQLAHALHQDK Unmodified 1473.7688 0.76882486 338 O95140 MFN2 Mitofusin-2 yes yes 0 0 0 0 0 7 0 1 42.939 42.939 4 5.5506E-06 10712 TMT1-6 106.29 72.884 108.03 161.26 101.69 135.32 95.774 136.91 102 160 109 131 102 131 1 1 1 1 1 1 8891.7 18499 338 18282 28365 36647 36647 1 TVNVPFHLALSDK Unmodified 1439.7773 0.77726428 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 8 0 1 60.541 60.541 3 0.0005981 17756 TMT1-7 78.285 31.131 161.02 296.24 278.3 209.3 251.96 332.86 153 293 283 211 261 319 2 2 2 2 2 2 14525 18500 2631 18283 28366 36648;36649 36648 2 TVNVVQFEPSK Unmodified 1246.6558 0.65575216 1084 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 0 6 0 1 55.443 55.443 3 0.00033087 16271 TMT1-5 96.745 59.319 84.366 170.27 103.42 86.976 103.75 182.52 80 167 109 87 109 174 1 1 1 1 1 1 17049 18501 1084 18284 28367 36650 36650 1 TVPEELVKPEELSK Unmodified 1596.8611 0.86105349 2918 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 1 5 0 2 55.743 55.743 3;4 1.3277E-05 16263 TMT1-4 98.439 70.156 221.24 716.11 442 382.65 511.68 518.4 212 694 465 383 523 500 2 2 2 2 2 2 36350 18502 2918 18285 28368;28369 36651;36652 36652 2 TVPFCSTFAAFFTR Unmodified 1650.7864 0.78644876 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 0 9 0 1 81.6 81.6 3 1.0533E-07 24254 TMT1-8 108.71 86.239 69.852 110.11 69.105 65.61 69.987 67.293 66 109 73 65 72 65 2 2 2 2 2 2 59081 18503 937 18286 28370 36653;36654 36654 2 TVPILFASTVR Unmodified 1202.7023 0.70230842 2025 Q6P1M0 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 0 0 0 0 0 9 0 1 65.262 65.262 2 0.0039161 17705 TMT1-8 82.029 40.049 61.363 79.663 78.922 57.219 78.199 83.049 58 80 80 58 80 80 1 1 1 1 1 1 17753 18504 2025 18287 28371 36655 36655 1 TVPLAGHVGFDSLPDQLVNK Unmodified 2106.111 0.11095402 1752 Q14141-2;Q14141-4;Q14141;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 0 7 0 2 66.422 66.422 3;4 3.1083E-24 20003 TMT1-6 140.28 123.2 245.68 370.01 234.08 218.46 311.9 341.81 232 367 247 218 319 329 2 2 2 2 2 2 102170 18505 1752 18288 28372;28373 36656;36657 36657 2 TVPLYESPR Unmodified 1060.5553 0.55530983 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 5 0 1 44.371 44.371 2 0.025489 11802 TMT1-4 75.825 39.43 92.023 131.31 111.9 118.29 97.107 120.89 87 131 116 116 102 116 1 1 1 1 1 1 15381 18506 1888 18289 28374 36658 36658 1 TVPPAVTGITFLSGGQSEEEASINLNAINK Unmodified 3056.5666 0.56660939 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 6.67 0.471 2 4 80.328 80.328 3;4;5 3.1196E-35 25101 TMT1-6 126.27 114.96 855.5 1026.1 915.15 784.93 926.95 1198.4 807 1033 939 784 960 1149 15 16 16 16 16 16 172770 18507 459 18290 28375;28376;28377;28378;28379;28380 36659;36660;36661;36662;36663;36664;36665;36666;36667;36668;36669;36670;36671;36672;36673;36674 36667 16 TVPVEAVTSK Unmodified 1029.5706 0.57062555 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 6 0 1 46.928 46.928 2 0.00039378 12934 TMT1-5 119.68 78.254 269.28 328.44 270.54 254.91 292.36 466.03 254 330 280 253 306 445 1 1 1 1 1 1 41746 18508 1766 18291 28381 36675 36675 1 TVQDLTSVVQTLLQQMQDK Unmodified 2174.1253 0.12528345 283 O75506 HSBP1 Heat shock factor-binding protein 1 yes yes 0 0 0 0 0 9 0 1 104.33 104.33 3 1.7742E-05 32516 TMT1-8 64.967 47.05 15.927 5.9879 23.096 6.0146 13.816 46.51 15 7 22 7 15 44 1 1 1 1 1 1 2015.3 18509 283 18292 28382 36676 36676 1 TVQIEASTVEIEER Unmodified 1602.8101 0.81008055 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 2.5 0.5 1 1 53.771 53.771 2 3.9607E-18 16683 TMT1-2 159.66 101.43 109.38 130.67 80.067 127.42 119.7 90.392 103 131 87 123 123 88 3 3 3 3 3 3 24465 18510 1812 18293 28383;28384 36677;36678;36679 36679 3 TVQLTSSELESTLETLK Unmodified 1877.9834 0.98335347 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 77.372 77.372 3 2.7247E-07 24742 TMT1-4 92.307 66.589 37.948 58.065 65.104 34.814 34.773 37.384 36 58 65 36 36 36 1 1 1 1 1 1 5361.9 18511 1101 18294 28385 36680 36680 1 TVQPHTVTALR Unmodified 1221.683 0.68296996 2039 Q6PJW8;Q6PJW8-2 CNST Consortin yes no 0 0 0 0 0 6 0 1 33.285 33.285 3 0.0090317 7519 TMT1-5 42.446 14.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18512 2039 18295 28386 36681 36681 1 TVQTAVFLYSLYK Unmodified 1531.8286 0.82863115 1800 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 0 9 0 1 77.576 77.576 3 3.2199E-05 22631 TMT1-8 95.651 63.153 69.446 25.696 28.546 21.108 65.767 36.499 65 29 29 22 65 36 1 1 1 1 1 1 3984.4 18513 1800 18296 28387 36682 36682 1 TVQTDHNAVQR Unmodified 1267.6269 0.62691165 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 3 0 1 22.69 22.69 3 9.0322E-06 4440 TMT1-2 115.91 86.381 54.178 57.34 42.98 20.533 50.585 52.923 51 58 44 22 51 51 1 1 1 1 1 1 7625.6 18514 199 18297 28388 36683 36683 1 TVQTLGSLSK Unmodified 1032.5815 0.58152458 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 8 0 1 49.709 49.709 2 2.334E-09 13455 TMT1-7 171.62 114.06 184.55 200.33 192.39 151.1 190.02 234.43 174 203 196 152 196 225 2 2 2 2 2 2 21385 18515 1786 18298 28389 36684;36685 36684 2 TVQVEQSK Unmodified 917.48181 0.48181054 1883 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 0 5 0 1 35.156 35.156 3 0.032454 8073 TMT1-4 53.751 17.511 170.13 140.44 141.39 139.65 146.86 166.37 160 145 145 138 152 160 1 1 1 1 1 1 26359 18516 1883 18299 28390 36686 36686 1 TVSDSIK Unmodified 748.39668 0.39668393 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.25 0.433 3 1 38.175 38.175 2;3 0.0019826 9345 TMT1-4 108.98 34.266 2724.4 3394.4 3060.7 2388.8 2938.5 3222.9 2572 3411 3128 2403 3020 3102 5 5 5 5 5 5 557060 18517 3010 18300 28391;28392;28393;28394 36687;36688;36689;36690;36691 36690 5 TVSDSIKK Unmodified 876.49165 0.49164694 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 7.5 0.5 1 1 37.301 37.301 3 0.0065509 8370 TMT1-7 52.591 7.2557 4317.7 4410.6 4204.2 3369.8 3701.1 5046.4 4068 4485 4289 3376 3852 4833 2 2 2 2 2 2 558620 18518 3010 18301 28395;28396 36692;36693;36694 36694 3 TVSLGAGAK Unmodified 802.45487 0.45486751 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 7.5 0.5 1 1 41.633 41.633 2 3.8076E-05 10152 TMT1-7 122.19 56.515 269.39 371.92 215.18 321.86 394.73 350.11 254 370 234 313 403 339 2 2 2 2 2 2 49421 18519 517 18302 28397;28398 36695;36696;36697 36697 3 TVSLWSLINSNK Unmodified 1360.7351 0.73506511 1711 Q13496-2;Q13496 MTM1 Myotubularin yes no 0 0 0 0 0 9 0 1 75.484 75.484 3 0.00043539 21806 TMT1-8 81.709 57.455 37.848 89.086 55.656 35.117 48.595 91.355 36 87 58 36 51 87 1 1 1 1 1 1 8156.8 18520 1711 18303 28399 36698 36698 1 TVSPDRLELEAAQK Unmodified 1555.8206 0.82058566 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 1 5 0 1 48.464 48.464 3 1.7163E-14 13369 TMT1-4 134.9 93.851 318.69 434.42 351.03 315.7 407.98 398.77 301 434 363 315 417 385 1 1 1 1 1 1 67449 18521 1803 18304 28400 36699 36699 1 TVSSLSEDLESTR Unmodified 1422.6838 0.6838174 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 3.4 1.36 2 1 2 51.859 51.859 2;3 1.8852E-168 15849 TMT1-1 315.72 264.52 742.87 923.19 780.61 750.32 695.01 932.11 701 927 807 741 728 893 6 6 6 6 6 6 515750 18522 1684 18305 28401;28402;28403;28404;28405 36700;36701;36702;36703;36704;36705 36701 6 TVSTGTALSK Unmodified 963.52368 0.52367535 2386 Q96CV9-3;Q96CV9 OPTN Optineurin yes no 0 0 0 0 0 7 0 1 41.294 41.294 2 0.00083053 10087 TMT1-6 80.037 38.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18523 2386 18306 28406 36706 36706 1 TVSTLHHVLQR Unmodified 1289.7204 0.7204181 88 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 0 0 0 8.5 0.5 1 1 35.012 35.012 3 0.017301 6549 TMT1-8 50.791 14.832 61.445 72.335 71.384 66.283 85.112 82.851 58 73 73 66 87 80 2 2 2 2 2 2 5669.1 18524 88 18307 28407;28408 36707;36708 36708 2 TVSYLGLE Unmodified 880.4542 0.45419881 57 O00244 ATOX1 Copper transport protein ATOX1 yes yes 0 0 0 0 0 4.5 0.5 1 1 65.385 65.385 2 0.0047556 19945 TMT1-4 122.79 95.828 115.44 159.39 119.46 78.214 112.01 136.45 109 159 123 80 115 131 3 3 3 3 3 3 33675 18525 57 18308 28409;28410 36709;36710;36711 36710 3 TVTAMDVVYALK Unmodified 1309.6952 0.69517413 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 0 6.5 2.87 2 1 1 4 2 74.675 74.675 2;3 5.9838E-26 23275 TMT1-7 204.07 110.42 5878.9 8591 5360.4 5977.1 8436.5 11969 5549 8531 5704 5906 8721 11454 12 12 12 12 12 12 2684100 18526 1443 18309 28411;28412;28413;28414;28415;28416;28417;28418;28419;28420 36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722;36723;36724;36725 36721 14 TVTAMDVVYALK Oxidation (M) 1325.6901 0.69008876 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 1 0 0 7.57 0.495 3 4 66.017 66.017 2;3 6.4469E-09 19800 TMT1-7 156.48 111.14 1142.9 1449.7 1083.7 1281 1565 1906.1 1078 1452 1140 1258 1615 1830 9 9 9 9 9 9 379190 18527 1443 18309 28421;28422;28423;28424;28425;28426;28427 36726;36727;36728;36729;36730;36731;36732;36733;36734;36735;36736 36732 232 11 TVTAMDVVYALKR Unmodified 1465.7963 0.79628516 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 1 6 3.56 1 1 1 67.231 67.231 3 3.5705E-56 18450 TMT1-8 228.93 178.58 1474 1889.9 978.32 1339.7 1040.4 3090.5 1388 1885 1071 1297 1155 2927 4 4 4 4 4 4 247180 18528 1443 18310 28428;28429;28430 36737;36738;36739;36740 36740 4 TVTATFGYPFR Unmodified 1258.6346 0.63462279 1893 Q16563-2;Q16563 SYPL1 Synaptophysin-like protein 1 yes no 0 0 0 0 0 9 0 1 61.042 61.042 2 1.4663E-06 16122 TMT1-8 127.94 74.473 68.152 147.3 142.89 108.25 126.32 166.96 65 145 145 109 131 160 1 1 1 1 1 1 22790 18529 1893 18311 28431 36741 36741 1 TVTDMLMTICAR Unmodified 1410.6669 0.66692725 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 8.5 0.5 1 1 71.152 71.152 2 3.0137E-12 21953 TMT1-7 141.88 119 38.074 50.861 50 43.516 84.839 121.24 36 51 51 44 87 116 1 1 1 1 1 1 11381 18530 3010 18312 28432;28433 36742;36743 36742 2 TVTEGGAAHR Unmodified 997.49411 0.49410656 2453 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 0 0 2.5 0.5 1 1 19.682 19.682 3 3.1399E-05 3405 TMT1-2 132.88 81.529 15.867 24.169 17.784 27.934 27.518 14.182 15 24 19 27 28 14 2 2 2 2 2 1 2773.8 18531 2453 18313 28434;28435 36744;36745 36745 2 TVTINTEQK Unmodified 1032.5451 0.54513908 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 5 0 1 40.586 40.586 2 1.7457E-13 10251 TMT1-4 183.27 103.03 200.91 144.94 193.81 191.96 163.24 289.56 189 152 196 189 174 276 1 1 1 1 1 1 26014 18532 1870 18314 28436 36746 36746 1 TVTIVVR Unmodified 786.49634 0.49633839 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 7 0 1 43.467 43.467 2 0.0031823 10948 TMT1-6 140.12 47.798 416.29 513.05 472.92 474.5 527.75 506.21 393 516 487 469 542 489 1 1 1 1 1 1 60330 18533 1233 18315 28437 36747 36747 1 TVTIWEIINSEYFTAEQR Unmodified 2199.0848 0.084798847 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 88.333 88.333 3 8.6049E-06 28470 TMT1-6 79.311 70.491 31.957 20.896 21.386 22.521 13.314 39.062 30 22 22 22 15 37 1 1 1 1 1 1 7420.9 18534 1833 18316 28438 36748 36748 1 TVTLQGNLDPCALYASEEEIGQLVK Unmodified 2747.3688 0.3687612 503 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 0 0 5 0 1 83.648 83.648 4 1.6244E-10 27191 TMT1-4 79.762 66.031 23.213 36.147 35.371 29.078 27.158 53.591 22 36 36 29 29 51 1 1 1 1 1 1 5480.8 18535 503 18317 28439 36749 36749 1 TVTNAVVTVPAYFNDSQR Unmodified 1980.9905 0.99050453 641 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 0 6.33 0.471 2 1 62.26 62.26 2;3 1.5243E-35 18394 TMT1-6 188.12 159.8 283.68 368.87 339.59 276.24 508.55 386.3 268 370 347 280 511 376 3 3 3 3 3 3 283870 18536 641 18318 28440;28441;28442 36750;36751;36752 36752 3 TVTSATIVYHLAR Unmodified 1430.7882 0.78816332 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 9 0 1 48.365 48.365 3 1.8457E-06 11159 TMT1-8 104.59 74.904 68.688 102.38 90.954 95.755 83.244 97.829 65 102 94 94 87 94 1 1 1 1 1 1 7689 18537 2328 18319 28443 36753 36753 1 TVTVWELISSEYFTAEQR Unmodified 2158.0582 0.058249746 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 88.816 88.816 3 5.8487E-25 28633 TMT1-6 147.53 135.78 15.904 22.111 13.422 31.461 28.111 22.65 15 22 15 30 29 22 1 1 1 1 1 1 10307 18538 1833 18320 28444 36754 36754 1 TVVALCGQR Unmodified 1002.528 0.52804923 1157 P48509 CD151 CD151 antigen yes yes 0 0 0 0 0 7 0 1 40.458 40.458 2 0.015371 9823 TMT1-6 81.548 46.253 54.026 64.471 62.563 81.404 122.66 65.79 51 65 65 80 123 65 1 1 1 1 1 1 20982 18539 1157 18321 28445 36755 36755 1 TVVSGLVQFVPK Unmodified 1272.7442 0.74417324 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 9 0 1 69.621 69.621 2 6.4035E-11 19527 TMT1-8 149.33 100.54 37.932 50.465 74.265 33.711 64.381 59.991 36 51 73 36 65 58 1 1 1 1 1 1 11341 18540 1297 18322 28446 36756 36756 1 TVVSGLVQFVPKEELQDR Unmodified 2043.1001 0.10005498 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 7 0 1 66.009 66.009 4 0.0043589 19831 TMT1-6 52.298 31.93 61.15 156.78 49.323 83.475 54.507 67.735 58 152 58 80 58 65 1 1 1 1 1 1 6631.8 18541 1297 18323 28447 36757 36757 1 TVVTGIEMFHK Unmodified 1260.6536 0.65364367 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 8 0 1 56.601 56.601 3 0.0011828 16171 TMT1-7 84.821 47.709 145.97 199.87 184.99 152.11 159.28 244.9 138 200 189 152 167 234 1 1 1 1 1 1 47638 18542 1180 18324 28448 36758 36758 1 TVWDWELMNDIKPIWQR Unmodified 2229.1041 0.1040945 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 1 9 0 1 82.184 82.184 3 0.014765 24428 TMT1-8 51.128 28.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18543 708 18325 28449 36759 36759 1 TVWDWELMNDIKPIWQRPSK Unmodified 2541.2838 0.28384978 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 2 9 0 1 75.316 75.316 5 0.017801 21786 TMT1-8 42.639 7.9182 160.97 203.1 185.78 176.98 112.99 219.57 152 204 191 174 123 209 1 1 1 1 1 1 19617 18544 708 18326 28450 36760 36760 1 TVYCNVHK Unmodified 1019.4859 0.48585006 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 6.5 0.5 1 1 33.812 33.812 3 0.016904 7650 TMT1-5 65.305 23.857 254.48 314.98 244.18 234.86 279.55 348.07 240 316 254 233 289 334 2 2 2 2 2 2 13162 18545 1688 18327 28451;28452 36761;36762 36761 2 TVYFAEEVQCEGNSFHK Unmodified 2043.8996 0.89964061 830 P21291 CSRP1 Cysteine and glycine-rich protein 1 yes yes 0 0 0 0 0 7 0 1 57.058 57.058 4 1.02E-10 16323 TMT1-6 115.5 83.409 99.866 107.97 75.955 81.345 83.357 113.82 94 109 80 80 87 109 1 1 1 1 1 1 11947 18546 830 18328 28453 36763 36763 1 TVYFDFQVGEDPPLFPSENR Unmodified 2356.1012 0.10117719 2126 Q86XR7-2;Q9Y3B3-2;Q9Y3B3 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 0 5 0 1 80.399 80.399 3 0.0080203 25919 TMT1-4 42.908 26.785 7.0926 29.622 45.208 13.166 28.439 37.564 7 29 44 15 29 36 1 1 1 1 1 1 2996.6 18547 2126 18329 28454 36764 36764 1 TVYGNHER Unmodified 974.45699 0.45699277 2719 Q9NR19;Q9NR19-2 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic yes no 0 0 0 0 0 3 0 1 20.441 20.441 3 0.042368 3569 TMT1-2 49.813 19.243 15.89 14.518 22.193 14.81 13.964 0 15 15 22 15 14 0 1 1 1 1 1 0 1302.4 18548 2719 18330 28455 36765 36765 1 TVYQYQYTNWSVEQLPAEPK Unmodified 2443.1696 0.16959111 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 6 0 1 67.63 67.63 3 5.7677E-10 21100 TMT1-5 96.718 77.682 30.366 74.57 63.099 58.459 62.437 83.498 29 73 65 58 65 80 1 1 1 1 1 1 23000 18549 570 18331 28456 36766 36766 1 TVYSVFGFSFK Unmodified 1280.6441 0.64412484 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 77.901 77.901 3 0.0002082 22705 TMT1-8 90.653 60.718 193.28 200.16 167.33 178.54 146.67 150.38 182 203 174 175 153 145 2 2 2 2 2 2 13700 18550 902 18332 28457 36767;36768 36767 2 TWDHFWLNEGHTVYLER Unmodified 2202.0283 0.028287021 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 6.5 0.5 1 1 60.628 60.628 4 1.413E-05 18300 TMT1-5 80.049 72.99 106.1 244.23 174.23 168.6 188.71 249.39 101 239 182 167 196 239 2 2 2 2 2 2 30841 18551 608 18333 28458;28459 36769;36770 36769 2 TWEQQQEVVSR Unmodified 1388.6684 0.66844211 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 0 3.5 0.5 1 1 41.266 41.266 2 6.4688E-12 10771 TMT1-3 175.74 136.94 146.46 213.11 90.838 134.73 161.73 196.86 138 211 102 131 167 189 2 2 2 2 2 2 33797 18552 2887 18334 28460;28461 36771;36772 36772 2 TWGDLGAAAGGGTPSK Unmodified 1444.6947 0.69465686 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 7 0 1 54.695 54.695 3 4.78E-16 15399 TMT1-6 135.72 111.16 169.74 194.39 161.99 138.88 122.42 239.55 160 196 167 138 131 228 1 1 1 1 1 1 23625 18553 974 18335 28462 36773 36773 1 TWGPEQVCSFLR Unmodified 1478.6976 0.69763375 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 8 0 2 66.777 66.777 2;3 0.00051429 20141 TMT1-7 84.605 72.812 254.78 308.28 198.64 221.82 245.37 294.68 240 309 211 218 254 283 2 2 2 2 2 2 63343 18554 3006 18336 28463;28464 36774;36775 36774 2 TWIEGLTGLSIGPDFQK Unmodified 1860.9622 0.96216452 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 0 8 0.816 1 1 1 84.144 84.144 3;4 3.7073E-31 25001 TMT1-8 157.07 129.73 489.89 736.85 536.2 468.61 524.27 706.72 463 732 558 467 545 677 5 5 5 5 5 5 113500 18555 2463 18337 28465;28466;28467 36776;36777;36778;36779;36780 36780 5 TWKPTLVILR Unmodified 1225.7547 0.75467834 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 1 9 0 1 60.094 60.094 3 0.004275 15715 TMT1-8 70.195 30.771 146.08 125.72 228.09 158.85 187.73 290.99 138 131 225 161 196 278 1 1 1 1 1 1 50951 18556 128 18338 28468 36781 36781 1 TWNDPSVQQDIK Unmodified 1429.6838 0.68375782 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 5 0 1 52.244 52.244 3 6.0594E-11 14894 TMT1-4 160.56 141.83 899.72 1059 995.07 738.96 1084 1102.2 849 1068 1013 749 1105 1063 1 1 1 1 1 1 192200 18557 640 18339 28469 36782 36782 1 TWTLCGTPEYLAPEIILSK Unmodified 2191.1235 0.12349254 760;850;847 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10;P22694-8;P22612 PRKACA;PRKACB;PRKACG cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma no no 0 0 0 0 0 8 0 1 84.283 84.283 3 1.4658E-06 26993 TMT1-7 80.238 61.202 18.897 40.69 35.651 17.154 21.037 34.578 18 40 36 18 22 33 1 1 1 1 1 1 10078 18558 760;850;847 18340 28470 36783 36783 1 TWTQVYK Unmodified 924.47052 0.47051757 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 8 0 1 50.203 50.203 2 8.9628E-05 13686 TMT1-7 121.99 66.272 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18559 1574 18341 28471 36784 36784 1 TWTVVDAK Unmodified 918.48108 0.48108226 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 7 0 1 52.408 52.408 2 0.0022128 14437 TMT1-6 137.9 70.872 169.15 333.06 143.65 193.73 227.97 290.91 160 326 160 189 236 279 1 1 1 1 1 1 40533 18560 676 18342 28472 36785 36785 1 TWWNQFSVTALQLLQANR Unmodified 2175.1225 0.12252176 2471 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 0 9 0 1 93.259 93.259 3 5.2998E-09 28559 TMT1-8 91.518 64.489 61.731 49.388 42.688 36.945 50.6 30.536 58 51 44 37 51 30 2 2 2 2 2 2 11627 18561 2471 18343 28473 36786;36787 36786 2 TWYVQATCATQGTGLYDGLDWLSHELSK Unmodified 3199.4921 0.49206423 1520 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 0 8 0 1 87.161 87.161 4 2.49E-08 28029 TMT1-7 71.794 65.499 30.731 44.288 27.262 29.266 42.855 53.143 29 44 29 29 44 51 1 1 1 1 1 1 8132.7 18562 1520 18344 28474 36788 36788 1 TWYVQATCATQGTGLYEGLDWLSNELSK Unmodified 3190.4917 0.49172988 774 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 0 8 0 2 93.497 93.497 3;4 3.4439E-05 30367 TMT1-7 44.164 31.235 15.791 36.908 19.821 37.914 13.412 15.607 15 36 22 36 15 15 1 1 1 1 1 1 4519.5 18563 774 18345 28475;28476 36789;36790 36790 2 TYADYESVNECMEGVCK Unmodified 2053.8067 0.80672779 1521 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 0 0 0 4 0 2 57.292 57.292 3;4 1.6045E-07 17149 TMT1-3 95.347 78.854 268 347.38 288.25 269.23 346.25 400.53 253 348 298 268 356 385 3 3 3 3 3 3 22629 18564 1521 18346 28477;28478 36791;36792;36793 36793 3 TYAEPLTAAMVEFYTMSQER Unmodified 2337.0657 0.065719664 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 7 0 1 88.814 88.814 3 0.00017084 28657 TMT1-6 63.488 55.098 7.2602 14.978 29.462 22.019 14.436 7.0501 7 15 29 22 15 7 1 1 1 1 1 1 2832.9 18565 1763 18347 28479 36794 36794 1 TYAFHNK Unmodified 879.4239 0.42390173 1159 P48595 SERPINB10 Serpin B10 yes yes 0 0 0 0 0 7 0 1 33.872 33.872 3 0.0044682 7150 TMT1-6 60.972 46.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18566 1159 18348 28480 36795 36795 1 TYAICGAIR Unmodified 1023.5172 0.51715019 1476 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 0 6.5 0.5 1 1 45.188 45.188 2 0.0012096 12149 TMT1-5 122.74 110.89 345.37 609.34 408.69 313.04 308.45 498.61 327 601 426 314 325 476 3 3 3 3 3 3 71448 18567 1476 18349 28481;28482 36796;36797;36798 36796 3 TYDAASYICEAAFDEVK Unmodified 1951.851 0.85095909 1089 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 0 4 0 1 73.351 73.351 3 0.00012909 23480 TMT1-3 76.158 57.562 62.227 102.75 94.492 40.837 86.282 82.818 59 102 95 44 87 80 2 2 2 2 2 2 3809.4 18568 1089 18350 28483 36799;36800 36800 2 TYDATTHFETTCDDIK Unmodified 1916.8098 0.80982255 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 3.5 0.5 1 1 47.617 47.617 3 2.6749E-16 14369 TMT1-2 138.57 121.29 308.26 429.49 306.22 260.81 330.46 414.84 291 428 319 261 341 398 3 3 3 3 3 3 87768 18569 1217 18351 28484;28485 36801;36802;36803 36801 3 TYDLVAAASK Unmodified 1037.5393 0.53932542 1565 Q02153-2;Q02153;Q02153-3 GUCY1B3 Guanylate cyclase soluble subunit beta-1 yes no 0 0 0 0 0 6 0 1 52.96 52.96 3 0.0068313 15332 TMT1-5 68.069 27.354 84.418 139.11 121.18 70.408 114.77 96.929 80 138 123 73 116 94 1 1 1 1 1 1 6906.3 18570 1565 18352 28486 36804 36804 1 TYDPSGDSTLPTCSK Unmodified 1627.7036 0.70356657 2977 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 0 4 0 1 47.206 47.206 3 0.0023159 13181 TMT1-3 63.682 58.367 68.823 110.31 61.451 42.951 78.599 90.499 65 109 65 44 80 87 1 1 1 1 1 1 7916.4 18571 2977 18353 28487 36805 36805 1 TYDYLFK Unmodified 948.45928 0.45928418 1366;2333 P61006;P61006-2;Q92930 RAB8A;RAB8B Ras-related protein Rab-8A;Ras-related protein Rab-8B no no 0 0 0 0 0 7 0 1 60.648 60.648 2 0.026016 17762 TMT1-6 92.925 62.354 277.69 398.79 419.78 428.07 433.9 468.38 263 399 429 422 449 451 1 1 1 1 1 1 72569 18572 1366;2333 18354 28488 36806 36806 1 TYEDIKENLESR Unmodified 1495.7155 0.71545188 883 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 1 4 0 1 51.981 51.981 3 0.0002191 15050 TMT1-3 97.084 63.399 257.22 423.52 232.77 296.05 258.33 335.88 243 418 252 288 271 322 1 1 1 1 1 1 29310 18573 883 18355 28489 36807 36807 1 TYEEGLKHEANNPQLK Unmodified 1869.9221 0.92209062 986 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 5 0 1 41.833 41.833 4 1.6885E-11 10768 TMT1-4 120.66 88.276 817.72 1120.6 1017.7 885.11 970.86 1278.1 773 1121 1043 882 1009 1225 2 2 2 2 2 2 44398 18574 986 18356 28490 36808;36809 36808 2 TYEFTLQS Unmodified 987.45493 0.45492709 2014 Q6ICL3-3;Q6ICL3;Q6ICL3-4;Q6ICL3-5;Q6ICL3-2 TANGO2 Transport and Golgi organization protein 2 homolog yes no 0 0 0 0 0 4.5 0.5 1 1 62.823 62.823 2 0.0010319 19331 TMT1-3 100.19 64.308 54.005 95.713 39.597 44.806 49.213 60.424 51 94 44 44 51 58 1 1 1 1 1 1 7016.8 18575 2014 18357 28491;28492 36810;36811 36810 2 TYEQVLENLESK Unmodified 1451.7144 0.71438925 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 0 4.5 0.5 1 1 69.116 69.116 3 1.2271E-05 21832 TMT1-3 108.5 80.443 176.54 278.25 209.82 190.1 211.01 241.29 167 276 218 189 218 232 2 2 2 2 2 2 35216 18576 1904 18358 28493;28494 36812;36813 36812 2 TYEQVLENLESKR Unmodified 1607.8155 0.81550028 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 1 6 0 1 61.502 61.502 3 0.00011996 18693 TMT1-5 95.582 78.897 84.362 194 83.963 127.49 103.21 144.16 80 189 94 123 109 138 1 1 1 1 1 1 18885 18577 1904 18359 28495 36814 36814 1 TYETTLEK Unmodified 983.48114 0.48114184 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 4 0 2 43.765 43.765 2;3 7.9509E-09 11752 TMT1-3 179.21 89.66 1323.8 1552 1429.3 1038.4 1629.6 1749.7 1249 1565 1456 1056 1661 1685 3 3 3 3 3 3 386140 + 18578 28 18360 28496;28497 36815;36816;36817 36815 3 TYFPHFDLSHGSAQVK Unmodified 1832.8846 0.8845829 1499 P69905;CON__P01966 HBA1 Hemoglobin subunit alpha yes no 0 0 0 0 0 6.5 3.2 1 2 1 53.54 53.54 4 1.6368E-44 13311 TMT 1-phospho 206.27 178.62 21662 22678 16255 13664 4393 9414.3 20385 22942 16944 13463 5109 8949 7 7 7 7 7 7 2161200 18579 1499 18361 28498;28499;28500;28501 36818;36819;36820;36821;36822;36823;36824 36818 7 TYFTDKK Unmodified 901.45453 0.45453316 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 1 7 0 1 41.562 41.562 3 0.025041 10157 TMT1-6 73.248 38.424 218.71 502.21 327.05 312.67 238.18 413.21 208 491 344 308 255 394 1 1 1 1 1 1 21014 18580 920 18362 28502 36825 36825 1 TYGADLASVDFQHASEDAR Unmodified 2051.9185 0.9184618 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 3.75 0.829 2 1 1 53.598 53.598 3 1.0085E-71 16469 TMT1-2 222.86 202.34 460.95 558.49 502.01 483.73 526.07 634.18 435 562 517 479 545 609 6 6 6 6 6 6 275360 18581 967 18363 28503;28504;28505;28506 36826;36827;36828;36829;36830;36831 36826 6 TYGLPCHCPFK Unmodified 1378.6162 0.61621231 766 P17900 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 0 0 0 0 0 8 0 1 46.738 46.738 3 0.0053143 12304 TMT1-7 67.153 18.869 130.65 143.76 102.35 141.54 169.55 173.18 123 145 109 138 174 167 1 1 1 1 1 1 9328.4 18582 766 18364 28507 36832 36832 1 TYGQSTYSR Unmodified 1061.4778 0.47778779 1033 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 0 3 0 1 29.579 29.579 2 0.0072197 7174 TMT1-2 93.325 56.631 38.078 50.872 49.286 59.534 49.048 45.504 36 51 51 58 51 44 1 1 1 1 1 1 6070.4 18583 1033 18365 28508 36833 36833 1 TYGVSFFLVK Unmodified 1159.6277 0.6277465 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 9 0 1 72.856 72.856 3 6.8488E-05 20906 TMT1-8 110.14 72.414 745.8 350.68 773.28 1054.2 950.16 1502.6 701 389 781 1023 1004 1435 2 2 2 2 2 2 106050 18584 3010;3014 18366 28509 36834;36835 36835 2 TYHVGEQWQK Unmodified 1274.6044 0.60438529 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 6 0 1 40.349 40.349 3 0.0019693 10488 TMT1-5 84.054 52.457 84.65 132.2 88.015 119.73 96.234 144.36 80 131 94 116 102 138 1 1 1 1 1 1 173720 18585 442 18367 28510 36836 36836 1 TYIGEIFTQILVLPYVGK Unmodified 2053.15 0.14996529 1014 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 0 9 0 2 101.36 101.36 3;4 7.1741E-09 31605 TMT1-8 89.358 61.496 61.586 80.284 40.849 36.625 73.43 36.281 58 80 44 37 73 36 2 2 2 2 2 2 20017 18586 1014 18368 28511;28512 36837;36838 36838 2 TYIPPKGETK Unmodified 1132.6128 0.61282471 588 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 1 7 0 2 39.621 39.621 3;4 0.0056812 9358 TMT1-6 77.744 71.267 2643.5 5238.1 3020.4 3200.1 3862.1 4666.5 2505 5138 3226 3159 3986 4481 7 7 7 7 7 7 125980 18587 588 18369 28513;28514 36839;36840;36841;36842;36843;36844;36845 36839 7 TYIQCIAAISR Unmodified 1294.6704 0.67035637 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 8 0 1 58.429 58.429 3 0.0032041 16917 TMT1-7 74.237 54.45 46.628 57.746 49.19 51.463 71.685 67.244 44 58 51 51 73 65 1 1 1 1 1 1 6656.7 18588 2116 18370 28515 36846 36846 1 TYLDIEPITGFTLQFAK Unmodified 1956.0244 0.024430422 749 P16671;P16671-3;P16671-4 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 8.5 0.5 1 1 87.774 87.774 3 1.6927E-14 26485 TMT1-8 106.6 80.056 184.41 192.41 221.49 212.86 184.44 314.54 174 196 225 210 196 300 2 2 2 2 2 2 76957 18589 749 18371 28516;28517 36847;36848;36849 36849 3 TYLGNALVCTCYGGSR Unmodified 1790.808 0.80798883 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16;P02751-2 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 1 56.668 56.668 3 0.00064786 16172 TMT1-6 68.41 62.982 46.455 104.75 38.413 60.069 55.034 83.71 44 102 44 58 58 80 1 1 1 1 1 1 8970.5 18590 442 18372 28518 36850 36850 1 TYLPAVDEK Unmodified 1034.5284 0.52842638 435 P02655 APOC2 Apolipoprotein C-II;Proapolipoprotein C-II yes yes 0 0 0 0 0 5 0 1 51.348 51.348 2 0.00030954 14538 TMT1-4 98.044 64.247 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18591 435 18373 28519 36851 36851 1 TYLQALPYFDR Unmodified 1385.698 0.69795133 261 O75306-2;O75306 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 0 0 7 0 1 68.466 68.466 2 0.0069836 20777 TMT1-6 83.045 49.17 69.209 56.339 42.274 36.028 42.544 53.152 65 58 44 36 44 51 1 1 1 1 1 1 10740 18592 261 18374 28520 36852 36852 1 TYLSEGPYYVKPVSTTAVEGAE Unmodified 2360.1424 0.14237331 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 1 5 0 1 64.293 64.293 3 1.2957E-05 19604 TMT1-4 59.585 57.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18593 1886 18375 28521 36853 36853 1 TYNEALAR Unmodified 936.46649 0.46649483 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 3 0 1 35.009 35.009 2 0.00015726 9329 TMT1-2 154.12 89.361 415.5 496.64 439.52 347.6 291.38 553.47 392 500 450 347 312 527 1 1 1 1 1 1 53405 18594 2066 18376 28522 36854 36854 1 TYNFLPEFLVSTQK Unmodified 1685.8665 0.86647322 967 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 0 8.33 0.471 2 1 79.214 79.214 3;4 3.1953E-22 25062 TMT1-7 168.93 129.56 1041.7 1350.9 1233.8 897.58 1192.3 1301.7 984 1355 1257 909 1222 1253 5 5 5 5 5 5 215120 18595 967 18377 28523;28524;28525 36855;36856;36857;36858;36859 36855 5 TYNTDVPLVLMNSFNTDEDTKK Unmodified 2544.2054 0.20538427 1910 Q16851-2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 1 6 0 1 71.186 71.186 4 1.7476E-17 22497 TMT1-5 107.39 93.229 85.04 85.801 61.811 66.051 69.658 106.74 80 87 65 65 73 102 1 1 1 1 1 1 13405 18596 1910 18378 28526 36860 36860 1 TYQELLVNQNPIAQPLASR Unmodified 2154.1433 0.14331678 2771 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 0 0 7 0 1 66.461 66.461 3 0.018675 20000 TMT1-6 33.45 23.914 68.987 94.575 47.19 44.22 56.312 67.683 65 94 51 44 58 65 1 1 1 1 1 1 10594 18597 2771 18379 28527 36861 36861 1 TYQLVYFLDK Unmodified 1288.6703 0.67033959 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 8 0 2 74.074 74.074 2;3 0.00070628 23073 TMT1-7 109.24 95.883 230.02 336.72 188.43 221.29 305.83 301.48 217 334 203 218 312 291 3 3 3 3 3 3 34097 18598 2648 18380 28528;28529 36862;36863;36864 36864 3 TYSLGSALRPSTSR Unmodified 1494.7791 0.77905519 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 9 0 1 41.928 41.928 3 3.6381E-24 8731 TMT1-8 179.39 114.35 273.65 468.69 137.18 241.79 366.51 395.69 258 460 164 235 374 381 2 2 2 2 2 2 40903 18599 575 18381 28530 36865;36866 36866 2 TYSTSFTPMYHAVTK Unmodified 1732.8131 0.81305744 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 8 0 1 51.553 51.553 3 4.0797E-15 14206 TMT1-7 136.14 106.2 68.817 102.74 68.827 81.893 76.808 90.55 65 102 73 80 80 87 1 1 1 1 1 1 11510 18600 389 18382 28531 36867 36867 1 TYSWDNAQVLLVGNK Unmodified 1706.8628 0.86278482 808 P20336 RAB3A Ras-related protein Rab-3A yes yes 0 0 0 0 0 7 0 1 67.801 67.801 2 5.0319E-07 20552 TMT1-6 83.226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18601 808 18383 28532 36868 36868 1 TYSYLNK Unmodified 887.43888 0.43888309 1401 P61916-2;P61916 NPC2 Epididymal secretory protein E1 yes no 0 0 0 0 0 7 0 1 45.485 45.485 2 0.011528 11709 TMT1-6 104.21 48.492 77.311 101.9 84.775 64.099 100.66 89.87 73 102 87 65 102 87 1 1 1 1 1 1 16989 18602 1401 18384 28533 36869 36869 1 TYSYLTPDLWK Unmodified 1385.6867 0.68671794 727 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 0 7.5 0.5 1 1 70.316 70.316 2 4.4185E-12 21565 TMT1-7 177.06 153.21 224.02 252.02 187.01 197.88 276.58 301.25 211 254 196 196 283 290 2 2 2 2 2 2 39716 18603 727 18385 28534;28535 36870;36871 36871 2 TYTAYVDLEK Unmodified 1201.5867 0.58666954 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 5 0 1 56.656 56.656 2 0.00027063 16612 TMT1-4 125.75 82.235 30.617 59.08 33.954 29.158 27.411 46.122 29 58 36 29 29 44 1 1 1 1 1 1 6038.9 18604 1297 18386 28536 36872 36872 1 TYTAYVDLEKDFAAEVVHPGDLK Unmodified 2580.2748 0.27478446 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 1 6 0 1 73.003 73.003 4 7.1849E-18 23174 TMT1-5 112.54 78.878 184.25 254.54 197.05 167.92 152.62 204.58 174 254 204 167 160 196 2 2 2 2 2 2 22769 18605 1297 18387 28537 36873;36874 36873 2 TYTVGCEECTVFPCLSIPCK Unmodified 2420.0521 0.05206021 410 P01033 TIMP1 Metalloproteinase inhibitor 1 yes yes 0 0 0 0 0 7 0 1 72.213 72.213 4 2.7498E-05 22258 TMT1-6 67.644 51.701 77.261 124.42 74.017 105.24 97.45 128.34 73 123 80 102 102 123 1 1 1 1 1 1 13887 18606 410 18388 28538 36875 36875 1 TYYMSGGLQPVPIVFR Unmodified 1826.9389 0.93892665 645 P11177;P11177-2 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 9 0 1 72.583 72.583 3 1.5392E-06 20708 TMT1-8 92.269 75.526 100.11 84.918 53.821 74.87 90.983 113.6 94 87 58 73 94 109 1 1 1 1 1 1 11294 18607 645 18389 28539 36876 36876 1 TYYSLITSFSELYLPSST Unmodified 2071.0038 0.003754559 2871 Q9UHY7;Q9UHY7-2 ENOPH1 Enolase-phosphatase E1 yes no 0 0 0 0 0 9 0 1 102.44 102.44 3 1.1422E-05 31993 TMT1-8 68.919 49.844 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18608 2871 18390 28540 36877 36877 1 VAAAESMPLLLECAR Unmodified 1629.8218 0.82184798 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 6 0 1 67.952 67.952 2 7.1764E-07 21257 TMT1-5 105.03 79.595 30.638 44.028 43.203 36.115 34.97 29.916 29 44 44 36 36 29 1 1 1 1 1 1 4329.5 18609 65 18391 28541 36878 36878 1 VAAALDDGSALGR Unmodified 1214.6255 0.62551466 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 4 0 1 51.131 51.131 2 2.4953E-88 14690 TMT1-3 261.03 182.52 261.99 448.48 311.49 243.5 362.12 429.92 248 443 324 246 371 413 2 2 2 2 2 2 91307 18610 800 18392 28542 36879;36880 36879 2 VAAGLQIK Unmodified 798.49634 0.49633839 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 0 8 0 1 49.882 49.882 2 0.0047556 13505 TMT1-7 122.79 50.841 542.68 684.18 546.06 433.62 552.07 675.01 512 686 563 436 569 648 2 2 2 2 2 2 70347 18611 1803 18393 28543 36881;36882 36881 2 VAAIEALNDGELQK Unmodified 1469.7726 0.77257283 1224 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 0 5 0 1 63.044 63.044 2 1.9311E-18 19085 TMT1-4 163.59 128.86 77.016 116.19 122.27 101.92 121.41 105.27 73 116 124 102 124 102 2 2 2 2 2 2 24935 18612 1224 18394 28544 36883;36884 36883 2 VAALQNLVK Unmodified 954.58622 0.58621603 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 9 0 1 60.285 60.285 2 0.00022619 15803 TMT1-8 139.31 69.046 130.11 207.02 138.97 108.79 109.82 189.81 123 205 145 109 116 181 1 1 1 1 1 1 49982 18613 1803 18395 28545 36885 36885 1 VAANAPK Unmodified 669.38097 0.38097428 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 6 0 1 32.456 32.456 2 0.013106 7189 TMT1-5 102.98 76.871 408.64 110.06 296.63 214.73 311.97 192.57 383 134 291 218 314 189 1 1 1 1 1 1 16516 18614 1540 18396 28546 36886 36886 1 VAASIGNAQK Unmodified 957.52434 0.52434406 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 7.67 0.943 2 1 40.446 40.446 2;3 9.4412E-21 9695 TMT1-6 199.68 89.815 1143.2 1230.4 1217.4 1003.8 1059.9 1724.4 1078 1248 1240 1003 1114 1646 2 2 2 2 2 2 363550 18615 41 18397 28547;28548;28549 36887;36888;36889 36887 3 VAASTGIDLLLLDDFK Unmodified 1689.9189 0.91890272 2220 Q8NE86-3;Q8NE86;Q8NE86-2 MCU Calcium uniporter protein, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 87.438 87.438 2 1.9939E-14 28117 TMT1-6 113.77 92.304 23.181 52.247 27.17 21.476 50.542 52.924 22 51 29 22 51 51 1 1 1 1 1 1 5555.7 18616 2220 18398 28550;28551 36890;36891 36891 2 VAASVLNPYVK Unmodified 1159.6601 0.66010926 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 58.747 58.747 3 0.00050382 15272 TMT1-8 83 59.149 514.03 805.95 569.51 523.8 680.76 736.37 486 799 595 522 698 709 4 4 4 4 4 4 63367 18617 1148 18399 28552;28553 36892;36893;36894;36895 36895 4 VAAYDKLEK Unmodified 1035.5601 0.56006086 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 5 2.35 1 2 1 45.627 45.627 3;4 0.00029159 12325 TMT1-5 128.03 77.681 7036.2 9450.3 8670.3 6703.7 8419.9 11085 6650 9464 8846 6751 8708 10624 6 6 6 6 6 6 1352100 18618 1019 18400 28554;28555;28556;28557 36896;36897;36898;36899;36900;36901 36899 6 VACAEEWQESR Unmodified 1363.5827 0.58266357 294 O75663;O75663-2 TIPRL TIP41-like protein yes no 0 0 0 0 0 3 0 1 43.684 43.684 2 0.045451 12755 TMT1-2 63.184 45.32 15.787 36.897 20.511 22.44 20.39 46.322 15 36 22 22 22 44 1 1 1 1 1 1 4257.4 18619 294 18401 28558 36902 36902 1 VACETVAK Unmodified 876.4375 0.43750288 973 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 0 0 0 5 0 1 37.528 37.528 2 0.0062567 9055 TMT1-4 107.66 51.948 115.75 113.85 105.93 103.06 112.47 120.45 109 116 109 102 116 116 1 1 1 1 1 1 8720.6 18620 973 18402 28559 36903 36903 1 VACITEQVLTLVNK Unmodified 1586.8702 0.87017839 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 9 0 1 82.571 82.571 3 8.1971E-07 24547 TMT1-8 99.531 74.209 53.987 80.554 55.361 51.401 55.432 83.698 51 80 58 51 58 80 1 1 1 1 1 1 11478 18621 478 18403 28560 36904 36904 1 VADALTNAVAHVDDMPNALSALSDLHAHK Unmodified 2995.4822 0.48216825 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 0 6.6 1.02 1 1 2 1 73.22 73.22 4;5 5.9954E-38 23085 TMT1-6 130.48 123.83 1234.7 1555.2 1087.6 895.04 628.45 1092.8 1164 1557 1134 889 676 1042 9 9 9 9 9 9 251540 18622 1499 18404 28561;28562;28563;28564;28565 36905;36906;36907;36908;36909;36910;36911;36912;36913 36909 9 VADALTNAVAHVDDMPNALSALSDLHAHK Oxidation (M) 3011.4771 0.47708287 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 1 0 0 7 0 1 67.666 67.666 5 1.0074E-08 20486 TMT1-6 69.356 52.28 161.91 149.59 72.801 89.058 90.075 121.09 152 152 80 87 94 116 1 1 1 1 1 1 17213 18623 1499 18404 28566 36914 36914 244 1 VADEAEKYK Unmodified 1051.5186 0.51858998 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 1 4.5 0.5 1 1 40.706 40.706 3 0.0057336 10345 TMT1-4 79.986 34.013 284.18 547.45 284.43 253.77 367.05 455.37 269 537 305 254 377 437 2 2 2 2 2 2 30165 18624 84 18405 28567;28568 36915;36916 36916 2 VADGLPLAASMQEDEQSGR Unmodified 1972.916 0.91601896 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 3 0.816 1 1 1 60.289 60.289 3 2.1453E-39 19378 TMT1-2 172.93 164.36 138.94 182.3 118.68 110.62 134.81 129.83 131 182 125 110 138 124 4 4 4 4 4 3 43775 18625 272 18406 28569;28570;28571 36917;36918;36919;36920 36919 4 VADGMVFGALLPCEECSGQLVFK Unmodified 2526.1957 0.19568798 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 7 0 1 85.169 85.169 4 1.6827E-06 27312 TMT1-6 72.015 56.761 23.244 28.678 36.51 13.552 35.457 45.892 22 29 36 15 36 44 1 1 1 1 1 1 3878.8 18626 606 18407 28572 36921 36921 1 VADHSGQVK Unmodified 939.47739 0.47739386 2095 Q7Z4G1;Q7Z4G1-2 COMMD6 COMM domain-containing protein 6 yes no 0 0 0 0 0 5 0 1 27.491 27.491 3 0.0070823 5112 TMT1-4 48.157 18.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18627 2095 18408 28573 36922 36922 1 VADIGLAAWGR Unmodified 1127.6087 0.60874239 864 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 0 0 0 7.5 0.5 1 1 64.589 64.589 2 1.9206E-05 19345 TMT1-7 120.33 81.526 483.53 788.22 480.59 434.16 672.86 659.84 457 779 508 435 684 637 3 3 3 3 3 3 56678 18628 864 18409 28574;28575 36923;36924;36925 36925 3 VADISGDTQK Unmodified 1032.5088 0.50875357 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 42.636 42.636 3 0.00013577 11322 TMT1-3 109.42 86.679 208.29 218.54 153.14 130.58 184.87 229.24 196 221 160 131 190 220 1 1 1 1 1 1 32637 18629 2071 18410 28576 36926 36926 1 VADIYLASQYTSYAISGPTVQGGLPVFR Unmodified 2972.5284 0.52837339 2032 Q6P4A8 PLBD1 Phospholipase B-like 1;Phospholipase B-like 1 chain A;Phospholipase B-like 1 chain B;Phospholipase B-like 1 chain C yes yes 0 0 0 0 0 9 0 1 85.898 85.898 4 0.034135 25857 TMT1-8 25.572 7.9771 23.185 52.258 26.454 37.533 12.66 38.015 22 51 29 36 15 36 1 1 1 1 1 1 14257 18630 2032 18411 28577 36927 36927 1 VADKIQLINNMLDK Unmodified 1613.8811 0.88107742 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 1 9 0 2 72.318 72.318 3;4 3.2099E-10 20552 TMT1-8 116.78 86.297 238.34 315.96 251.11 250.03 264.46 401.8 225 316 261 247 277 384 2 2 2 2 2 2 36038 18631 397 18412 28578;28579 36928;36929 36928 2 VADLLYWK Unmodified 1006.5488 0.54876789 260 O75298-3;O75298 RTN2 Reticulon-2 yes no 0 0 0 0 0 8 0 1 73.766 73.766 3 0.0080981 22948 TMT1-7 76.899 45.527 92.053 115.2 120.46 117.94 88.49 128.59 87 116 123 116 94 123 1 1 1 1 1 1 8336.9 18632 260 18413 28580 36930 36930 1 VADLYELVQYAGNIIPR Unmodified 1933.0309 0.030912783 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 9 0 1 96.204 96.204 3 8.7411E-09 29706 TMT1-8 92.575 64.606 30.839 20.844 28.996 21.919 21.221 22.846 29 22 29 22 22 22 1 1 1 1 1 1 4135 18633 2444 18414 28581 36931 36931 1 VADMALHYANK Unmodified 1231.6019 0.60194245 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 7 0 1 50.675 50.675 3 0.032408 13750 TMT1-6 48.741 24.754 178.68 278.08 211.63 246.79 213.45 246.55 169 276 222 241 223 237 1 1 1 1 1 1 37146 18634 1232 18415 28582 36932 36932 1 VADNLAIQLAAVTEDKYEILQSVDDAAIVIK Unmodified 3327.7814 0.78135319 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 1 7.5 0.5 1 1 99.302 99.302 4;5 6.5913E-14 32368 TMT1-6 89.396 79.248 23.398 21.551 16.714 30.334 19.53 30.357 22 22 18 29 21 29 2 2 2 2 2 2 3058.5 18635 1655 18416 28583;28584 36933;36934 36933 2 VADPAYLPTQQDVLR Unmodified 1684.8784 0.87843489 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 4.5 0.5 1 1 59.63 59.63 2;3 8.0675E-10 17759 TMT1-4 118.76 91.971 46.598 33.917 74.459 50.675 33.494 53.41 44 36 73 51 36 51 1 1 1 1 1 1 18460 18636 1211 18417 28585;28586 36935;36936 36936 2 VADPDHDHTGFLTEYVATR Unmodified 2142.997 0.99704647 930 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 0 4 0 1 51.663 51.663 4 1.3979E-17 14916 TMT1-3 121.27 106.5 207.68 226.55 249.26 196.83 193.38 227.94 196 230 252 197 201 219 1 1 1 1 1 1 61515 18637 930 18418 28587 36937 36937 1 VADSSKGPDEAK Unmodified 1202.5779 0.57789577 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 4 0 1 33.916 33.916 3 0.00060987 7883 TMT1-3 88.552 57.725 235.12 370.13 205.51 253.65 274.49 226.69 222 366 222 248 281 220 1 1 1 1 1 1 11082 18638 226;227 18419 28588 36938 36938 1 VADWTGATYQDK Unmodified 1353.6201 0.62009493 144 O15371-2;O15371-3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 0 5 0 1 54.114 54.114 3 0.014221 15669 TMT1-4 54.199 26.55 77.136 108.97 108.21 62.894 90.471 144.53 73 109 109 65 94 138 1 1 1 1 1 1 16465 18639 144 18420 28589 36939 36939 1 VADYIPQLAK Unmodified 1116.6179 0.61791009 334 O94925;O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 7 0 1 63.858 63.858 3 0.015164 18968 TMT1-6 59.426 34.209 75.39 184.88 156.88 82.786 157.1 157.55 72 181 159 87 159 152 1 1 1 1 1 1 18169 18640 334 18421 28590 36940 36940 1 VAEAALQIFK Unmodified 1088.623 0.62299547 2743 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 0 8 0 1 70.563 70.563 2 0.0032091 21718 TMT1-7 96.89 56.832 53.797 72.469 94.234 64.091 71.104 67.261 51 73 94 65 73 65 1 1 1 1 1 1 5292.9 18641 2743 18422 28591 36941 36941 1 VAEAGGEASSPR Unmodified 1129.5364 0.53636531 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 2 0 1 29.05 29.05 2 3.2302E-08 6603 TMT1-1 136.49 59.917 38.995 74.109 55.819 51.497 48.868 61.5 37 73 58 51 51 59 2 2 2 2 2 2 10217 18642 224 18423 28592 36942;36943 36942 2 VAEEHAPSIVFIDEIDAIGTK Unmodified 2253.1529 0.15287841 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 5 0 1 73.763 73.763 3 2.2558E-09 23321 TMT1-4 78.418 63.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18643 1415 18424 28593 36944 36944 1 VAEELALEQAK Unmodified 1199.6398 0.63976774 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 0 4 0 1 56.091 56.091 3 5.279E-05 16655 TMT1-3 104.79 67.451 115.02 213.25 145.62 122.82 156.31 157.57 109 210 152 123 160 152 1 1 1 1 1 1 24106 18644 2775 18425 28594 36945 36945 1 VAEELVAAAR Unmodified 1027.5662 0.56620887 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 4 0 1 52.957 52.957 2 0.0004911 15489 TMT1-3 115.7 70.019 99.319 137.75 142.62 123.55 127.23 120.03 94 138 145 123 131 116 1 1 1 1 1 1 42598 18645 1187 18426 28595 36946 36946 1 VAEEWAQGTFK Unmodified 1264.6088 0.60880197 473 P04424-3;P04424-2;P04424 ASL Argininosuccinate lyase yes no 0 0 0 0 0 6 0 1 58.931 58.931 3 0.024558 17649 TMT1-5 51.567 25.448 92.447 69.887 92.788 95.646 83.249 97.828 87 73 94 94 87 94 1 1 1 1 1 1 10020 18646 473 18427 28596 36947 36947 1 VAEFHTELER Unmodified 1229.6041 0.60405094 1158 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 0 3.5 0.5 1 1 42.234 42.234 3 0.00088161 12213 TMT1-2 92.611 48.803 130.04 197.12 158.85 185.91 188.42 234.47 123 196 166 182 196 225 3 3 3 3 3 3 37481 18647 1158 18428 28597;28598 36948;36949;36950 36948 3 VAEIEHAEK Unmodified 1024.5189 0.51892433 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 3 0 1 38.125 38.125 3 0.0051988 10636 TMT1-2 75.294 38.103 244.6 435 360.43 233.83 372.86 343.27 232 430 368 240 378 332 2 2 2 2 2 2 17799 18648 1504 18429 28599 36951;36952 36952 2 VAEIEHAEKEK Unmodified 1281.6565 0.65648044 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 1 4 0 1 39.065 39.065 3 0.0012407 9961 TMT1-3 89.9 81.724 107.94 161.01 116.97 132.7 186.47 149.25 102 160 123 131 189 145 1 1 1 1 1 1 11534 18649 1504 18430 28600 36953 36953 1 VAEKLDEIYVAGLVAHSDLDER Unmodified 2441.2438 0.24381868 226;227 O60506-2;O60506;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 1 5.5 0.5 1 1 70.756 70.756 4 1.8182E-12 22254 TMT1-5 93.767 85.118 223.76 267.5 217.16 204.45 238.53 334.31 211 269 225 203 248 320 3 3 3 3 3 3 36147 18650 226;227 18431 28601;28602 36954;36955;36956 36956 3 VAEKLEALSVK Unmodified 1185.6969 0.69688869 1116 P43487-2;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 1 8 0 1 58.381 58.381 3 0.00061926 16901 TMT1-7 96.334 37.445 233.17 376.24 166.26 252.46 171.76 356.47 220 371 186 243 187 339 1 1 1 1 1 1 24052 18651 1116 18432 28603 36957 36957 1 VAELEPLKEQLR Unmodified 1423.8035 0.80347903 2819 Q9P1Z2-2;Q9P1Z2-3;Q9P1Z2 CALCOCO1 Calcium-binding and coiled-coil domain-containing protein 1 yes no 0 0 0 0 1 6 0 1 55.669 55.669 3 0.0031913 16382 TMT1-5 74.78 47.775 185.28 133.29 126.18 148.8 115.31 189.66 174 139 131 145 123 181 1 1 1 1 1 1 12360 18652 2819 18433 28604 36958 36958 1 VAELSSDDFHLDR Unmodified 1502.7001 0.70013617 2327 Q92896;Q92896-3;Q92896-2 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 0 3.5 0.5 1 1 53.693 53.693 3 4.9062E-11 16721 TMT1-2 136.21 123.93 91.966 161.37 96.003 94.628 127.2 159.47 87 159 102 94 131 153 2 2 2 2 2 2 21974 18653 2327 18434 28605;28606 36959;36960 36959 2 VAEQTPLSALYLASLIK Unmodified 1816.0346 0.034601177 968 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 0 9 0 1 86.96 86.96 3 2.1645E-07 26242 TMT1-8 79.393 48.955 15.824 29.444 20.624 29.943 27.924 30.117 15 29 22 29 29 29 1 1 1 1 1 1 3920 18654 968 18435 28607 36961 36961 1 VAEQTPLTALYVANLIK Unmodified 1843.0455 0.045500215 483 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 0 8.33 0.471 2 1 82.388 82.388 3;4 5.6531E-19 26281 TMT1-7 135.55 99.891 131.07 173.2 185.55 177.34 152.93 183.03 124 174 189 175 160 175 4 4 4 4 4 3 24372 18655 483 18436 28608;28609;28610 36962;36963;36964;36965 36962 4 VAEQVGIDR Unmodified 985.51926 0.51925868 1710 Q13492-3;Q13492-2;Q13492-5;Q13492;Q13492-4 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 0 3 0 1 39.819 39.819 2 0.0042564 11238 TMT1-2 68.847 44.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18656 1710 18437 28611 36966 36966 1 VAEQVLNAVNK Unmodified 1183.6561 0.65608651 2677 Q9HB40;Q9HB40-2 SCPEP1 Retinoid-inducible serine carboxypeptidase yes no 0 0 0 0 0 6.5 0.5 1 1 59.162 59.162 3 0.00023028 17149 TMT1-6 99.522 58.239 69.48 140.38 105.99 71.197 120.95 159.65 66 138 109 73 124 153 2 2 2 2 2 2 15009 18657 2677 18438 28612;28613 36967;36968 36968 2 VAETANEEEVKK Unmodified 1345.6725 0.67252444 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 1 4 0 1 37.986 37.986 4 0.0064379 9531 TMT1-3 62.338 43.506 139.03 166.37 116.11 141.16 146.54 173.84 131 167 123 138 152 167 1 1 1 1 1 1 6526.5 18658 1383 18439 28614 36969 36969 1 VAEVLFDAADANAIEEVNLAYENVK Unmodified 2706.3388 0.33884128 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 92.776 92.776 4 0.028466 30683 TMT1-4 30.592 20.965 15.936 14.647 14.249 22.932 14.101 15.588 15 15 15 22 15 15 1 1 1 1 1 1 1770.4 18659 1763 18440 28615 36970 36970 1 VAFEFWQVSK Unmodified 1239.6288 0.62880913 1972 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 yes yes 0 0 0 0 0 9 0 1 73.377 73.377 3 0.02853 21035 TMT1-8 45.359 13.72 46.673 57.87 41.588 51.916 71.664 67.245 44 58 44 51 73 65 1 1 1 1 1 1 6885.4 18660 1972 18441 28616 36971 36971 1 VAFITGGGTGLGK Unmodified 1176.6503 0.65027285 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 9 0 1 60.82 60.82 2 1.7636E-18 16073 TMT1-8 162.38 83.724 130.14 190.94 146.48 131.81 140.7 143.09 123 190 152 131 145 138 1 1 1 1 1 1 27686 18661 1900 18442 28617 36972 36972 1 VAFTLLEK Unmodified 919.53787 0.53786886 149 O15498-2;O15498 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 0 8 0 1 67.302 67.302 2 0.0057704 20383 TMT1-7 114.28 64.155 176.8 249.82 190.85 119.87 169.96 190.23 167 249 196 123 174 183 1 1 1 1 1 1 21247 18662 149 18443 28618 36973 36973 1 VAGALAEAGVGLEEIAK Unmodified 1596.8723 0.87228688 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 5 0 1 75.216 75.216 2 1.119E-13 23894 TMT1-4 100.55 68.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18663 1928 18444 28619 36974 36974 1 VAGALVQNTEK Unmodified 1128.6139 0.61388734 2936 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 0 0 0 0 0 6 0 1 46.025 46.025 2 2.6021E-06 12599 TMT1-5 130.41 91.394 61.646 49.151 57.224 50.999 70.9 90.719 58 51 58 51 73 87 1 1 1 1 1 1 7267.1 18664 2936 18445 28620 36975 36975 1 VAGALVQNTEKGPNAEQLR Unmodified 1994.0545 0.054501772 2936 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 0 0 0 0 1 6 0 1 47.246 47.246 4 0.00085922 13029 TMT1-5 54.764 35.441 130.71 136.39 97.29 94.994 103.64 175.06 123 138 102 94 109 167 1 1 1 1 1 1 8464.9 18665 2936 18446 28621 36976 36976 1 VAGAQIQGAK Unmodified 941.52943 0.52942943 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 7 0 2 39.334 39.334 2;3 0.01106 9289 TMT1-6 63.216 35.691 280.91 346.58 283.98 267.6 330.3 318.9 265 348 294 266 338 308 2 2 2 2 2 2 45336 18666 1702 18447 28622;28623 36977;36978 36977 2 VAGCSVHK Unmodified 856.42252 0.42252152 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 7 0 1 30.074 30.074 3 0.019301 5751 TMT1-6 63.486 33.676 61.661 64.302 41.871 35.205 87.604 51.866 58 65 44 36 87 51 1 1 1 1 1 1 4366 18667 2896 18449 28624 36979 36979 1 VAGDLHK Unmodified 738.40244 0.40243801 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 5 0 1 34.522 34.522 3 0.020386 7863 TMT1-4 67.032 19.965 114.85 209.55 176.94 129.04 191.22 229.06 109 207 181 131 196 220 1 1 1 1 1 1 8506.9 18668 2109 18450 28625 36980 36980 1 VAGESAEPEPEPEADYYAK Unmodified 2050.9007 0.90074605 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 2.5 0.5 1 1 51.871 51.871 3 1.9981E-17 15694 TMT1-1 120.24 97.767 193.15 215.99 175.78 137.62 145.64 204.78 182 218 181 138 152 196 3 3 3 3 3 3 59322 18669 415 18451 28626;28627 36981;36982;36983 36981 3 VAGGAAPSKPASAK Unmodified 1210.667 0.66698555 1804 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 1 8 0 1 34.825 34.825 3 1.4655E-05 7613 TMT1-7 100.07 83.539 99.475 153.29 103.27 111.57 74.894 106.59 94 152 109 109 80 102 1 1 1 1 1 1 8403.7 18670 1804 18452 28628 36984 36984 1 VAGHPLAQNER Unmodified 1190.6156 0.61561868 223 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 0 5 0 1 26.266 26.266 3 0.00040159 4601 TMT1-4 94.791 67.676 62.436 83.907 75.326 34.941 53.708 64.559 59 84 76 37 55 62 2 2 2 2 2 2 10521 18671 223 18453 28629 36985;36986 36985 2 VAGHPNIVINNAAGNFISPTER Unmodified 2290.1818 0.18182755 1900 Q16698-2;Q16698 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 0 7 0 1 54.09 54.09 3 1.9811E-17 15118 TMT1-6 107.41 85.422 46.905 27.216 28.537 21.813 28.298 30.107 44 29 29 22 29 29 1 1 1 1 1 1 27247 18672 1900 18454 28630 36987 36987 1 VAGILTVK Unmodified 799.51674 0.51673948 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 9 0 1 57.228 57.228 2 0.0067033 14660 TMT1-8 97.798 30.766 246.16 289.33 221.02 231.72 229.18 296.2 232 291 231 228 239 284 1 1 1 1 1 1 47371 18673 2492 18455 28631 36988 36988 1 VAGMDVELTVEER Unmodified 1446.7024 0.70244436 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 2.5 0.5 1 1 59.867 59.867 2 2.2335E-05 18838 TMT1-1 110.44 89.289 170.01 163.85 142.13 115.78 135.02 190.16 160 167 146 116 138 182 4 4 4 4 3 4 13041 18674 1422 18456 28632;28633 36989;36990;36991;36992 36989 4 VAGMLQSFQGK Unmodified 1164.5961 0.59612879 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 9 0 1 61.876 61.876 2 0.00027782 16462 TMT1-8 99.973 37.427 54.103 64.685 49.455 35.319 57.491 45.263 51 65 51 36 58 44 1 1 1 1 1 1 6033.1 18675 929 18457 28634 36993 36993 1 VAGQDGSVVQFK Unmodified 1233.6354 0.63535107 1404;1327 P61956-2;P61956;Q6EEV6;P55854;P55854-2 SUMO2;SUMO4;SUMO3 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 3 no no 0 0 0 0 0 6.33 0.471 2 1 51.482 51.482 2;3 1.722E-33 14678 TMT1-5 209.8 177.86 662.26 952.04 779.77 545.2 736.27 888.29 626 949 799 554 757 853 4 4 4 4 4 4 224630 18676 1404;1327 18458 28635;28636;28637 36994;36995;36996;36997 36996 4 VAGSVTELIQAAEAMK Unmodified 1616.8444 0.84435757 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.62 2.39 1 2 2 1 2 85.339 85.339 2;3 6.9425E-29 27420 TMT1-7 185.32 164.23 2090 2965.2 2210.9 2052.3 2255.2 3649.6 1974 2954 2302 2037 2366 3484 13 13 13 13 13 13 390780 18677 3010 18459 28638;28639;28640;28641;28642;28643;28644;28645 36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010 37008 13 VAGSVTELIQAAEAMK Oxidation (M) 1632.8393 0.83927219 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 6.5 0.5 2 2 75.943 75.943 3 4.0442E-08 23842 TMT1-6 106.3 102.46 154.16 202.51 248.03 141.33 184.45 227.12 146 204 247 146 190 218 3 3 3 3 3 3 38692 18678 3010 18459 28646;28647;28648;28649 37011;37012;37013;37014;37015 37014 342 5 VAGTGEGGLEEMVEELNSGK Oxidation (M) 2020.9259 0.92591494 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 1 0 0 3 0 1 61.811 61.811 3 1.7785E-09 19928 TMT1-2 95.666 85.327 23.374 21.486 20.715 37.753 19.173 61.281 22 22 22 36 22 58 1 1 1 1 1 1 4642.2 18679 2887 18460 28650 37016 37016 319 1 VAGTGEGGLEEMVEELNSGK Unmodified 2004.931 0.93100032 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 0 3.5 0.5 1 1 76.047 76.047 3 1.3179E-35 25511 TMT1-2 155.92 138.64 161.67 232.22 222.83 156.08 235.31 249.13 153 232 226 159 240 240 3 3 3 3 3 3 73736 18680 2887 18460 28651;28652 37017;37018;37019 37017 3 VAGTPCGAVFGQR Unmodified 1318.6452 0.64520425 1095 P42331-6;P42331-4;P42331-2 ARHGAP25 Rho GTPase-activating protein 25 yes no 0 0 0 0 0 8 0 1 47.234 47.234 2 0.0098827 12546 TMT1-7 70.412 51.881 38.351 20.332 29.33 14.241 21.574 22.836 36 22 29 15 22 22 1 1 1 1 1 1 5054.4 18681 1095 18461 28653 37020 37020 1 VAGYAALLEQYQK Unmodified 1452.7613 0.76127986 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 7.5 0.5 1 1 68.684 68.684 3 3.4745E-11 20929 TMT1-7 138.99 109.46 139.19 150.62 103.29 110.19 148.22 166.33 131 152 109 109 152 160 1 1 1 1 1 1 37597 18682 1304 18462 28654;28655 37021;37022 37022 2 VAHALAEGLGVIACIGEK Unmodified 1806.9662 0.96620404 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 7.75 0.433 1 3 75.53 75.53 2;3;4 1.9573E-42 23590 TMT1-7 196.57 171.72 547.94 927.81 717.78 622.19 732.72 980.07 519 918 743 621 760 939 7 7 7 7 7 7 340050 18683 1352 18463 28656;28657;28658;28659 37023;37024;37025;37026;37027;37028;37029 37028 7 VAHLALK Unmodified 750.47521 0.47520902 1308 P55036-2;P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 0 9 0 1 41.483 41.483 3 0.016788 8587 TMT1-8 60.151 0 53.8 111.33 60.775 58.45 70.301 98.198 51 109 65 58 73 94 1 1 1 1 1 1 9456.8 18684 1308 18464 28660 37030 37030 1 VAHSDKPGSTSTASFR Unmodified 1646.8012 0.8012472 2813 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 1 8 0.816 1 1 1 31.417 31.417 4 1.7404E-06 6246 TMT1-7 93.716 85.116 102.62 138.83 128.37 101.58 119.74 154.35 97 139 131 102 124 148 3 3 3 3 3 3 13492 18685 2813 18465 28661;28662;28663 37031;37032;37033 37032 3 VAHSFNCTPIEGMLSHQLK Unmodified 2168.0507 0.050678722 2943 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 0 8 0 1 56.312 56.312 4 1.8316E-10 16075 TMT1-7 102.5 88.195 84.123 177.15 138.52 164.28 124.81 136.08 80 174 145 160 131 131 1 1 1 1 1 1 22797 18686 2943 18466 28664 37034 37034 1 VAIDVGYR Unmodified 891.48142 0.48141661 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 0 5 0 1 48.529 48.529 2 0.0043746 13407 TMT1-4 125.5 69.414 430.41 529.85 428.92 320.56 483.69 533.06 406 532 441 325 494 513 1 1 1 1 1 1 65545 18687 716 18467 28665 37035 37035 1 VAIEHLDK Unmodified 923.50763 0.50763136 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 5 0 1 42.145 42.145 3 0.0011945 10880 TMT1-4 108.98 84.055 292.87 586.35 595.79 449 390.29 644.45 279 579 603 450 414 615 1 1 1 1 1 1 48768 18688 1161 18468 28666 37036 37036 1 VAIEWPGAYPK Unmodified 1229.6445 0.64445919 2301 Q92556 ELMO1 Engulfment and cell motility protein 1 yes yes 0 0 0 0 0 8 0 1 65.079 65.079 3 0.00010239 19544 TMT1-7 77.379 67.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18689 2301 18469 28667 37037 37037 1 VAIHYINPPNPAK Unmodified 1432.7827 0.78268401 1505 P78406 RAE1 mRNA export factor yes yes 0 0 0 0 0 8 0 1 47.995 47.995 3 0.00070609 12775 TMT1-7 77.64 48.3 152.92 248.52 237.74 140.59 198.35 219.27 145 247 240 145 203 211 2 2 2 2 2 2 10242 18690 1505 18470 28668 37038;37039 37038 2 VAIIDTYK Unmodified 921.51713 0.51713341 749 P16671;P16671-3;P16671-4;P16671-2 CD36 Platelet glycoprotein 4 yes no 0 0 0 0 0 4.67 2.62 1 1 1 56.084 56.084 2 0.00086329 15866 TMT1-6 147.34 91.831 2862 2914.7 3068.4 2919.8 2925.8 3246.7 2698 2969 3131 2889 3032 3124 6 6 6 6 6 6 360200 18691 749 18471 28669;28670;28671 37040;37041;37042;37043;37044;37045 37044 6 VAILVDDMADTCGTICHAADK Unmodified 2275.0283 0.0282883 661;1360 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 5 0 1 67.802 67.802 3 7.2429E-19 20982 TMT1-4 108.17 95.242 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18692 661;1360 18472 28672 37046 37046 1 VAIQKEDLQK Unmodified 1170.6608 0.66083754 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 1 7 0 1 45.358 45.358 3 0.00045587 11684 TMT1-6 83.883 70.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18693 1786 18473 28673 37047 37047 1 VAIQLNDTHPALSIPELMR Unmodified 2117.1303 0.13030925 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 7 0 1 68.91 68.91 3 1.6131E-08 20987 TMT1-6 76.768 16.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18694 648 18474 28674 37048 37048 1 VAISLGFLGGAK Unmodified 1131.6652 0.66519463 248 O75027;O75027-2 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 0 0 0 0 0 9 0 1 72.478 72.478 3 0.00072428 20643 TMT1-8 73.781 44.694 30.6 43.921 49.736 59.645 41.714 45.714 29 44 51 58 44 44 1 1 1 1 1 1 3103 18695 248 18475 28675 37049 37049 1 VAIVVGAPR Unmodified 880.54944 0.54943659 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5 4 1 1 48.362 48.362 2 7.4677E-05 10955 TMT1-8 154.35 24.299 860.1 1036.1 1000.5 725.94 945.75 1369.5 812 1044 1016 735 981 1310 4 4 4 4 4 4 282560 18696 565 18476 28676;28677 37050;37051;37052;37053 37052 4 VAIYSPDGVR Unmodified 1075.5662 0.56620887 2220 Q8NE86-3;Q8NE86;Q8NE86-2 MCU Calcium uniporter protein, mitochondrial yes no 0 0 0 0 0 5 0 2 47.718 47.718 2 7.4616E-05 13054 TMT1-4 106.68 94.835 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18697 2220 18477 28678;28679 37054;37055 37054 2 VAKPVVEMDGDEMTR Unmodified 1675.7909 0.79094179 1164 P48735 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 0 0 0 0 1 5 0 1 48.86 48.86 3 0.00019146 13548 TMT1-4 79.471 68.837 192.17 224.96 152.15 146.01 181.21 345.54 181 226 160 145 191 329 1 1 1 1 1 1 26722 18698 1164 18478 28680 37056 37056 1 VALEGLRPTIPPGISPHVCK Unmodified 2140.1827 0.18267917 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 1 9 0 2 57.69 57.69 4;5 2.6444E-31 14870 TMT1-8 139.11 117.65 1027.2 1311.4 1168.4 962.03 936.37 1448.6 970 1316 1197 960 985 1384 4 4 4 4 4 4 95072 18699 1700 18479 28681;28682 37057;37058;37059;37060 37058 4 VALEIFQHSK Unmodified 1170.6397 0.63970816 2787 Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 0 0 8 0 1 56.284 56.284 3 0.00087543 16089 TMT1-7 64.82 26.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18700 2787 18480 28683 37061 37061 1 VALGHGLK Unmodified 793.48102 0.48102268 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 8 0 1 39.636 39.636 3 0.0031652 9482 TMT1-7 91.626 39.839 223.98 572.83 282.01 304.85 331.85 376.42 213 557 306 300 343 362 1 1 1 1 1 1 13843 18701 1627 18481 28684 37062 37062 1 VALILQNVDLPN Unmodified 1307.7449 0.74490152 1583 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 0 0 0 0 0 7 0 1 84.494 84.494 2 3.9769E-07 27093 TMT1-6 123.72 102.74 38.054 74.548 33.362 45.067 55.137 100.76 36 73 37 44 58 96 2 2 2 2 2 2 10767 18702 1583 18482 28685 37063;37064 37064 2 VALLLLEK Unmodified 897.5899 0.58990443 3020 Q9Y4W6;Q01484-5;Q01484-2;Q01484 AFG3L2;ANK2 AFG3-like protein 2;Ankyrin-2 yes no 0 0 0 0 0 9 0 1 74.203 74.203 2 0.0017272 21317 TMT1-8 138.9 33.779 108.08 130.09 119.85 109.6 127.06 143.48 102 131 123 109 131 138 1 1 1 1 1 1 12323 18703 3020 18483 28686 37065 37065 1 VALNVSCANLLDKDIGSK Unmodified 1916.0037 0.0037117545 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 1 8 0 1 63.444 63.444 3 8.3795E-14 18914 TMT1-7 117.3 100.98 84.714 116.19 90.737 80.183 98.309 136.84 80 116 94 80 102 131 1 1 1 1 1 1 12991 18704 252 18484 28687 37066 37066 1 VALSALK Unmodified 700.44833 0.44832557 2679 Q9HBH0 RHOF Rho-related GTP-binding protein RhoF yes yes 0 0 0 0 0 9 0 1 52.554 52.554 2 0.025542 12823 TMT1-8 91.906 16.596 130.06 201.48 152.45 177.93 168.43 157.23 123 200 160 174 174 152 1 1 1 1 1 1 11879 18705 2679 18485 28688 37067 37067 1 VALSPAGVQNLVK Unmodified 1294.7609 0.76088593 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8 0 1 62.339 62.339 3 0.00016874 18429 TMT1-7 89.356 55.471 53.924 95.487 53.388 75.585 54.32 83.73 51 94 58 73 58 80 1 1 1 1 1 1 11455 18706 1702 18486 28689 37068 37068 1 VALSSETEVALAR Unmodified 1344.7249 0.72489436 919 P27816-2;P27816-6;P27816 MAP4 Microtubule-associated protein 4 yes no 0 0 0 0 0 4 0 1 53.379 53.379 2 5.2934E-16 15630 TMT1-3 172.21 156.32 46.581 88.914 30.686 60.52 55.563 67.704 44 87 36 58 58 65 1 1 1 1 1 1 8343.1 18707 919 18487 28690 37069 37069 1 VALTGLTVAEYFR Unmodified 1438.782 0.78201531 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 75.372 75.372 2 1.2073E-68 21720 TMT1-8 236.77 183.98 421.46 492.53 343.05 356.38 478.5 484.17 397 495 361 353 489 467 3 3 3 3 3 3 172590 18708 508 18488 28691;28692 37070;37071;37072 37071 3 VALVTFNSAAHNKPSLIR Unmodified 1937.0847 0.084679688 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 1 9 0 1 53.086 53.086 4 2.7309E-40 13010 TMT1-8 174.52 136.5 53.811 80.063 85.474 80.471 99.652 97.36 51 80 87 80 102 94 1 1 1 1 1 1 11353 18709 2116 18489 28693 37073 37073 1 VALVVHPGTAR Unmodified 1118.656 0.65602693 1649 Q12846 STX4 Syntaxin-4 yes yes 0 0 0 0 0 8 0 1 38.676 38.676 3 0.0043207 9097 TMT1-7 70.488 57.435 46.378 80.794 71.684 49.856 85.867 82.83 44 80 73 51 87 80 1 1 1 1 1 1 8066.1 18710 1649 18490 28694 37074 37074 1 VALVYGQMNEPPGAR Unmodified 1600.8032 0.80316145 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 7 0 2 55.481 55.481 2;3 2.4846E-19 15706 TMT1-6 162.48 143.65 207.34 330.28 219.62 236.72 258.28 325.22 196 327 232 233 268 312 3 3 3 3 3 3 45943 18711 508 18491 28695;28696 37075;37076;37077 37076 3 VALWNEVDGQTK Unmodified 1358.683 0.68302954 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 6 0 1 60.914 60.914 3 0.00030183 18454 TMT1-5 89.43 55.643 199.21 330.15 323.7 208.8 250.75 277.47 189 328 327 213 258 267 1 1 1 1 1 1 27247 18712 1960 18492 28697 37078 37078 1 VALYVDWIR Unmodified 1133.6233 0.62332982 872 P24158 PRTN3 Myeloblastin yes yes 0 0 0 0 0 9 0 1 72.119 72.119 2 0.005097 20470 TMT1-8 101.54 50.576 114.86 205.26 178.61 97.446 180.51 156.88 109 203 181 102 182 152 2 2 2 2 2 2 28141 18713 872 18493 28698 37079;37080 37079 2 VAMANIQPQMLVAGATSIAR Oxidation (M) 2057.0762 0.076165191 776 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 0 8.5 0.5 1 1 67.214 67.214 2;3 1.8256E-06 20365 TMT1-7 83.063 62.326 22.969 59.214 56.796 51.433 49.164 52.963 22 58 58 51 51 51 1 1 1 1 1 1 17296 18714 776 18494 28699;28700 37081;37082 37081 148;149 2 VAMANIQPQMLVAGATSIAR Unmodified 2041.0813 0.081250569 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 9 0 3 73.41 73.41 2;3;4 6.987E-40 20978 TMT1-8 158.02 121.5 208.04 213.51 200.13 151.3 212.54 248.71 196 217 204 153 218 239 4 4 4 4 4 4 163660 18715 776 18494 28701;28702;28703 37083;37084;37085;37086 37085 4 VAMFLTDSNNIK Unmodified 1351.6806 0.6805867 1820 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 0 8 0 1 65.845 65.845 3 5.3144E-05 19834 TMT1-7 101.93 77.329 30.257 65.633 88.919 49.537 48.189 83.905 29 65 88 51 51 80 1 1 1 1 1 1 6209 18716 1820 18495 28704 37087 37087 1 VAMNVYELSSAAGLPCEIDPALVVALSSQK Unmodified 3131.5883 0.58827281 2963 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 0 8 0 1 94.183 94.183 4 2.7054E-06 30625 TMT1-7 62.377 51.861 7.345 15.214 14.998 6.3397 22.193 15.357 7 15 15 7 22 15 1 1 1 1 1 1 2655.6 18717 2963 18496 28705 37088 37088 1 VAMQDATAQMAMLQFISSGLSK Unmodified 2327.1324 0.13235944 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 9 0 2 91.773 91.773 3;4 7.289E-17 28097 TMT1-8 105.46 87.166 62.808 56.88 35.702 44.896 56.778 83.66 59 58 36 44 59 80 2 2 1 2 2 2 11075 18718 2492 18497 28706;28707 37089;37090 37090 2 VAMSHFEPNEYIHYDLLEK Unmodified 2334.0991 0.099068703 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 6 0 1 63.734 63.734 4 1.1783E-17 19523 TMT1-5 122.57 97.975 92.416 92.469 78.705 41.335 109.84 66.156 87 94 80 44 109 65 1 1 1 1 1 1 13670 18719 2492 18498 28708 37091 37091 1 VANEAEFILSR Unmodified 1247.651 0.65100113 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 5 0 1 60.836 60.836 2 2.7867E-05 18241 TMT1-4 116.84 78.083 192.76 237.58 222.63 125.47 236.21 264.02 182 239 225 131 240 254 2 2 2 2 2 2 17034 18720 1229 18499 28709 37092;37093 37093 2 VANIIAEVAK Unmodified 1026.6073 0.6073454 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 0 7 0 1 66.567 66.567 2 0.0014479 20128 TMT1-6 102.52 65.503 160.78 193.95 224.7 141.54 189.14 272.83 152 196 225 145 196 261 2 2 2 2 2 2 21976 18721 1264 18500 28710 37094;37095 37095 2 VANILHDDCAFLSAFGDVSKPER Unmodified 2560.238 0.2380218 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 1 7 0 1 71.021 71.021 4 7.7759E-13 21813 TMT1-6 97.5 85.868 138.8 173.29 148.91 99.957 141.07 175.06 131 174 152 102 145 168 1 1 1 1 1 1 30052 18722 2521 18501 28711 37096 37096 1 VANLCGINQK Unmodified 1115.5757 0.5757277 1596;1585 Q05655;Q05655-2;Q04759;Q04759-2;Q04759-3 PRKCD;PRKCQ Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit;Protein kinase C theta type no no 0 0 0 0 0 8 0 1 47.722 47.722 2 3.0866E-06 12701 TMT1-7 156.51 140.5 130.65 128.67 113.61 79.119 82.396 144.76 123 131 116 80 87 138 1 1 1 1 1 1 18045 18723 1596;1585 18502 28712 37097 37097 1 VANLLLCMYAK Unmodified 1294.6777 0.67774993 2970 Q9Y2Q5;Q9Y2Q5-2 LAMTOR2 Ragulator complex protein LAMTOR2 yes no 0 0 0 0 0 9 0 1 76.612 76.612 2 0.00023316 22268 TMT1-8 101.65 50.554 46.675 57.875 41.238 59.758 62.634 76.031 44 58 44 58 65 73 1 1 1 1 1 1 6302.9 18724 2970 18503 28713 37098 37098 1 VANPSGNLTETYVQDR Unmodified 1762.8486 0.84859132 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.83 1.57 1 1 2 1 1 48.495 48.495 2;3;4 2.1054E-55 13617 TMT1-3 226.73 211.14 1342.7 1803.6 1831.6 1382.7 1514.2 1908.6 1270 1809 1856 1391 1571 1831 8 8 8 8 8 8 1233300 18725 831 18504 28714;28715;28716;28717;28718;28719 37099;37100;37101;37102;37103;37104;37105;37106;37107 37103 9 VANQLDKDHAK Unmodified 1237.6415 0.64149908 167 O43312-4;O43312;O43312-5 MTSS1 Metastasis suppressor protein 1 yes no 0 0 0 0 1 6 0 1 33.984 33.984 4 0.012442 7774 TMT1-5 61.48 49.195 261.2 423.45 284.37 327.59 393.62 527.1 247 419 301 322 408 505 1 1 1 1 1 1 13623 18726 167 18505 28720 37108 37108 1 VANVELYYR Unmodified 1125.5819 0.58185893 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5.5 0.5 1 1 52.243 52.243 2 0.00024842 14899 TMT1-4 143.7 127.41 322.72 413.95 413.41 254.12 404.51 521.46 305 416 417 262 415 500 3 3 3 3 3 3 83197 18727 1540 18506 28721;28722 37109;37110;37111 37109 3 VANVEYFPEESSALIEFFDR Unmodified 2361.1165 0.11649291 1935 Q460N5-4;Q460N5-1;Q460N5 PARP14 Poly [ADP-ribose] polymerase 14 yes no 0 0 0 0 0 5 0 1 90.153 90.153 3 0.0058672 29670 TMT1-4 35.036 20.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18728 1935 18507 28723 37112 37112 1 VAPAPARPSGPSK Unmodified 1233.683 0.68296996 1154 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 1 8 0 1 32.679 32.679 3 0.00067051 6796 TMT1-7 81.789 59.21 169.61 264.19 124.27 187.19 172.26 246.66 160 261 138 181 181 236 1 1 1 1 1 1 20272 18729 1154 18508 28724 37113 37113 1 VAPAPAVVK Unmodified 850.52764 0.52763852 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 7 0 1 44.713 44.713 2 0.044199 11402 TMT1-6 68.312 32.127 139.01 150.11 134.47 115.42 178.34 165.47 131 152 138 116 181 160 1 1 1 1 1 1 11347 18730 1438 18509 28725 37114 37114 1 VAPEEHPILLTEAPLNPK Unmodified 1967.0728 0.072777598 2044;615 P0CG39;Q6S8J3;Q9BYX7 POTEJ;POTEE;POTEKP POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 0 0 0 0 0 5 0 1 55.204 55.204 4 0.01171 15879 TMT1-4 42.813 15.478 91.641 161.54 150.57 83.99 113.09 127.89 87 160 152 87 116 123 1 1 1 1 1 1 32000 18731 615;2044 18510 28726 37115 37115 1 VAPEEHPVLLTEAPLNPK Unmodified 1953.0571 0.057127534 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 5.38 2.12 2 1 6 3 1 2 1 57.287 57.287 3;4 9.4604E-75 16636 TMT1-4 234.63 88.93 23490 35352 29982 22305 30272 36012 22224 35185 30698 22563 31103 34593 27 27 27 27 27 27 8614700 18732 1357;1479 18511 28727;28728;28729;28730;28731;28732;28733;28734;28735;28736;28737;28738;28739;28740;28741;28742 37116;37117;37118;37119;37120;37121;37122;37123;37124;37125;37126;37127;37128;37129;37130;37131;37132;37133;37134;37135;37136;37137;37138;37139;37140;37141;37142;37143 37125 28 VAPSAVLGPNVSIGK Unmodified 1407.8086 0.80856441 2420 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 0 8 0 1 60.727 60.727 3 0.00066589 17835 TMT1-7 55.186 30.342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18733 2420 18512 28743 37144 37144 1 VAQCSQKPCEDSCR Unmodified 1723.7076 0.70762286 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 5 0 1 29.679 29.679 3 0.0006322 5950 TMT1-4 77.664 77.66 115.47 151.93 120.63 61.996 98.889 144.29 109 152 123 65 102 138 1 1 1 1 1 1 19648 18734 471 18513 28744 37145 37145 1 VAQDWLK Unmodified 858.45995 0.45995289 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 7 0 1 55.679 55.679 2 0.040438 15812 TMT1-6 86.011 52.89 84.354 154.05 119.26 93.373 120.24 120.22 80 152 123 94 123 116 1 1 1 1 1 1 13852 18735 1913 18514 28745 37146 37146 1 VAQFLVIYAPR Unmodified 1275.7339 0.7339429 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 9 0 1 72.884 72.884 2 0.0072977 20816 TMT1-8 76.17 46.697 61.653 56.727 49.51 43.934 64.168 52.535 58 58 51 44 65 51 1 1 1 1 1 1 4986.7 18736 2631 18515 28746 37147 37147 1 VAQILKEPK Unmodified 1024.6281 0.62808085 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 1 8 0 1 48.166 48.166 4 0.028394 12887 TMT1-7 54.066 36.63 258.59 440.65 347.79 289.67 291.13 455.4 245 436 359 289 306 435 1 1 1 1 1 1 10259 18737 1148 18516 28747 37148 37148 1 VAQLCDFNPK Unmodified 1190.5754 0.57539335 597 P09497-2;P09497 CLTB Clathrin light chain B yes no 0 0 0 0 0 7 0 2 55.923 55.923 2;3 2.6629E-06 15846 TMT1-6 157.99 130.74 307.95 603.66 390.23 374.89 449.01 556.43 292 593 411 372 464 534 2 2 2 2 2 2 48375 18738 597 18517 28748;28749 37149;37150 37149 2 VAQLEAQCQEPCK Unmodified 1559.7072 0.70721216 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 4 0 1 45.519 45.519 4 0.00051932 12490 TMT1-3 77.912 73.197 160.95 174.99 212.16 156.99 278.69 203.12 152 178 213 160 280 198 1 1 1 1 1 1 9207.7 18739 439 18518 28750 37151 37151 1 VAQLEAQCQEPCKDTVQIHDITGK Unmodified 2767.3269 0.32691316 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 4.25 1.92 1 2 1 53.634 53.634 4;5 1.1666E-09 15387 TMT1-4 85.467 74.072 2326.6 3185.7 3021.2 2240.4 2875.7 3147.9 2200 3189 3072 2264 2951 3030 5 5 5 5 5 5 620770 18740 439 18519 28751;28752;28753;28754 37152;37153;37154;37155;37156 37155 5 VAQLEQVYIR Unmodified 1217.6768 0.67682195 1434 P62318-2;P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 0 5 0 1 56.886 56.886 2 0.0043951 16709 TMT1-4 93.096 39.218 77.298 124.53 67.827 74.024 91.572 97.591 73 123 73 73 94 94 1 1 1 1 1 1 9111.5 18741 1434 18520 28755 37157 37157 1 VAQLVIDSDLDVLLFPDKK Unmodified 2127.1827 0.18272198 1344 P57764 GSDMD Gasdermin-D yes yes 0 0 0 0 1 7 0 1 86.735 86.735 4 0.00010812 27839 TMT1-6 65.47 56.97 30.391 66.005 66.116 26.539 64.711 59.981 29 65 66 29 65 58 1 1 1 1 1 1 4901.5 18742 1344 18521 28756 37158 37158 1 VAQPTITDNK Unmodified 1085.5717 0.57168818 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.33 0.471 2 1 41.861 41.861 2;3 1.6576E-07 10755 TMT1-4 164.33 126.06 641.96 708.5 791.18 595.1 836.26 681.83 606 719 798 602 848 662 3 3 3 3 3 3 274100 18743 831 18522 28757;28758;28759 37159;37160;37161 37159 3 VAQPTITDNKDGTVTVR Unmodified 1813.9534 0.95339074 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4.8 1.99 2 3 4 1 44.95 44.95 3;4 3.3409E-36 11941 TMT1-4 191.41 163.2 5849.1 6629.8 6258.6 5047 5644.4 7344.6 5517 6700 6387 5056 5859 7041 11 11 11 11 11 11 1457300 18744 831 18523 28760;28761;28762;28763;28764;28765;28766;28767;28768;28769 37162;37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174 37165 13 VAQTEFDR Unmodified 964.46141 0.46140945 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 0 3 0 1 37.734 37.734 2 0.000943 10409 TMT1-2 98.009 63.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18745 2723 18524 28770 37175 37175 1 VAQVAEITYGQK Unmodified 1305.6929 0.69286595 330 O94905 ERLIN2 Erlin-2 yes yes 0 0 0 0 0 6 0 1 54.034 54.034 3 0.0081296 15730 TMT1-5 61.375 36.993 146.31 149.02 170.23 114.74 100.9 228.44 138 152 171 116 109 217 1 1 1 1 1 1 11702 18746 330 18525 28771 37176 37176 1 VASHLEVNCDKR Unmodified 1426.6987 0.69869638 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 1 5.5 0.5 1 1 33.179 33.179 3;4 1.4999E-15 7273 TMT1-4 179.59 147.52 707.07 932.24 1019.9 957.58 1062.6 1281.9 669 937 1037 950 1100 1231 3 3 3 3 3 3 101990 18747 535 18526 28772;28773 37177;37178;37179 37177 3 VASLLVK Unmodified 728.47963 0.47962569 395;2727 P00492;Q9NRG1-2;Q9NRG1 HPRT1;PRTFDC1 Hypoxanthine-guanine phosphoribosyltransferase;Phosphoribosyltransferase domain-containing protein 1 no no 0 0 0 0 0 9 0 1 57.636 57.636 2 0.010551 14734 TMT1-8 119.89 8.609 369.56 448.54 446.91 276.09 350.37 697.83 349 452 451 283 370 664 2 2 2 2 2 2 32781 18748 395;2727 18527 28774 37180;37181 37180 2 VASSDLVNMGISVVSYTLK Unmodified 1982.0394 0.039428559 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 9 0 1 90.111 90.111 3 5.5337E-28 27490 TMT1-8 138.66 112.51 23.22 44.8 26.914 37.235 27.039 46.132 22 44 29 36 29 44 1 1 1 1 1 1 8484 18749 318 18528 28775 37182 37182 1 VASSTLLDDRR Unmodified 1231.6521 0.65206377 237 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 1 5 0 1 38.117 38.117 3 0.0009937 9298 TMT1-4 61.194 38.508 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18750 237 18529 28776 37183 37183 1 VASTSQEYDK Unmodified 1126.5142 0.51423288 119 O14976-2;O14976 GAK Cyclin-G-associated kinase yes no 0 0 0 0 0 4 0 1 36.893 36.893 3 1.6586E-05 9091 TMT1-3 100.48 70.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18751 119 18530 28777 37184 37184 1 VASVAENK Unmodified 816.43413 0.43413207 2165 Q8N1F7-2;Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 0 5 0 1 37.517 37.517 2 0.044728 9054 TMT1-4 76.064 22.898 69 63.311 71.54 74.079 76.911 98.009 65 65 73 73 80 94 1 1 1 1 1 1 5858.5 18752 2165 18531 28778 37185 37185 1 VASVYEAPGFFLDLEPIPGALDAVR Unmodified 2645.3741 0.37410458 2247 Q8TCD5-2;Q8TCD5 NT5C 5'(3')-deoxyribonucleotidase, cytosolic type yes no 0 0 0 0 0 7 0 1 93.998 93.998 3 0.0006276 30579 TMT1-6 50.029 34.437 7.4703 0 6.8424 15.578 21.769 15.369 7 0 7 15 22 15 1 0 1 1 1 1 2312.1 18753 2247 18532 28779 37186 37186 1 VASYGVKPR Unmodified 975.55016 0.55016488 402 P00751;P00751-2 CFB Complement factor B;Complement factor B Ba fragment;Complement factor B Bb fragment yes no 0 0 0 0 1 8 0 1 35.646 35.646 3 0.0034433 7808 TMT1-7 89.047 65.619 84.922 101.66 68.151 96.688 105.94 105.71 80 102 73 94 109 102 1 1 1 1 1 1 56101 18754 402 18533 28780 37187 37187 1 VATAQDDITGDGTTSNVLIIGELLK Unmodified 2543.333 0.33302762 1068 P40227 CCT6A T-complex protein 1 subunit zeta yes yes 0 0 0 0 0 5.33 0.471 2 1 85.44 85.44 3;4 1.8346E-22 27818 TMT1-4 102.95 86.44 91.901 114.78 146.46 93.396 90.922 121.06 87 116 146 95 95 116 2 2 2 2 2 2 36951 18755 1068 18534 28781;28782;28783 37188;37189;37190 37189 3 VATGAWLFSGSYNR Unmodified 1527.747 0.74702678 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 9 0 1 66.015 66.015 2 0.00048968 18075 TMT1-8 77.74 40.549 46.556 42.435 74.288 43.028 33.846 53.4 44 44 73 44 36 51 1 1 1 1 1 1 12561 18756 772 18535 28784 37191 37191 1 VATPVDWK Unmodified 914.48617 0.48616764 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 7 0 1 53.909 53.909 2 0.0048418 15110 TMT1-6 122.18 100.03 430.41 474.99 655.79 475.21 608.34 564.68 407 484 654 481 621 546 2 2 2 2 2 2 118040 18757 945 18536 28785 37192;37193 37193 2 VATVSLPR Unmodified 841.50215 0.50215205 24 CON__P00761 yes yes 0 0 0 0 0 4 3 1 1 45.569 45.569 2 8.1008E-05 11696 TMT1-6 156.4 113.35 3265.6 4157.6 4867.9 3600.5 6359 3762.7 3090 4191 4893 3669 6361 3700 4 4 4 4 4 4 632490 + 18758 24 18537 28786;28787 37194;37195;37196;37197 37196 4 VATWFNQPAR Unmodified 1188.604 0.60399136 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 0 9 0 1 55.031 55.031 2 0.0010248 13755 TMT1-8 92.051 40.197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18759 897 18538 28788 37198 37198 1 VAVAIPNRPPDAVLTDTTSLNQAALYR Unmodified 2865.5349 0.53485575 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 7 0 2 66.581 66.581 3;4 3.3207E-16 20032 TMT1-6 99.387 87.756 93.208 115.36 106.62 88.243 84.343 106.33 88 116 109 88 88 102 3 3 3 3 3 3 40335 18760 1250 18539 28789;28790 37199;37200;37201 37200 3 VAVATPAK Unmodified 755.45414 0.45413923 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 40.754 40.754 3 0.0065714 9831 TMT1-6 79.116 10.694 37.958 58.094 63.319 74.84 62.49 60.045 36 58 65 73 65 58 1 1 1 1 1 1 2733.1 18761 786 18540 28791 37202 37202 1 VAVATPAKK Unmodified 883.5491 0.54910224 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 9 0 1 37.806 37.806 3 0.033067 7350 TMT1-8 63.076 23.771 161.38 201.02 117.31 259.5 184.82 240.97 152 201 131 247 196 231 1 1 1 1 1 1 10971 18762 786 18541 28792 37203 37203 1 VAVCDIPPR Unmodified 1025.5328 0.53280025 2650;1713 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q13509;Q13509-2 TUBB1;TUBB3 Tubulin beta-1 chain;Tubulin beta-3 chain no no 0 0 0 0 0 5 0.816 2 2 2 44.987 44.987 2 0.00030931 12761 TMT1-3 98.009 50.66 2898 4207.6 3682.2 2915.9 3394.1 3993.4 2741 4196 3770 2927 3504 3837 23 23 23 23 23 23 106010 18763 2650;1713 18542 28793;28794;28795;28796;28797;28798 37204;37205;37206;37207;37208;37209;37210;37211;37212;37213;37214;37215;37216;37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227 37207 24 VAVEEVDEEGK Unmodified 1202.5667 0.56666238 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 0 2 0 1 46.83 46.83 2 6.9535E-09 13667 TMT1-1 128.81 88.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18764 429 18543 28799 37228 37228 1 VAVEEVDEEGKFVR Unmodified 1604.8046 0.80460124 429 P02545-2;P02545-6;P02545-3;P02545;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 1 3.5 0.5 1 1 51.048 51.048 3 7.5663E-06 15768 TMT1-2 84.734 42.767 84.307 153.92 127.22 109.09 131.16 238.24 80 152 131 109 138 227 1 1 1 1 1 1 16678 18765 429 18544 28800;28801 37229;37230 37229 2 VAVFFGGLSIK Unmodified 1136.6594 0.65938097 1738 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 0 9 0 1 77.027 77.027 2 3.8822E-08 22381 TMT1-8 140.75 90.147 161.75 126.48 119.47 141.38 123.99 190.47 152 131 124 138 131 182 2 2 2 2 2 2 20516 18766 1738 18545 28802 37231;37232 37231 2 VAVGELTDEDVK Unmodified 1273.6402 0.64016167 1193 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 0 3 0 1 55.297 55.297 3 0.00051983 17368 TMT1-2 84.479 51.981 61.674 41.676 58.73 27.256 50.02 60.401 58 44 58 29 51 58 1 1 1 1 1 1 3313.7 18767 1193 18546 28803 37233 37233 1 VAVLENQNK Unmodified 1013.5506 0.55055881 738 Q03060-23;Q03060-9;Q03060-24;Q03060-8;Q03060-32;Q03060-26;Q03060-21;Q03060-31;Q03060-6;P18846-2;P16220-3;P18846;P16220-2;P16220 ATF1;CREB1 Cyclic AMP-dependent transcription factor ATF-1;Cyclic AMP-responsive element-binding protein 1 yes no 0 0 0 0 0 6 0 1 44.843 44.843 2 0.0087836 12129 TMT1-5 90.601 54.044 53.504 166.63 63.695 112.77 136.63 73.919 51 161 73 109 138 73 1 1 1 1 1 1 12327 18768 738 18547 28804 37234 37234 1 VAVLGASGGIGQPLSLLLK Unmodified 1792.0822 0.082220072 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 85.083 85.083 3 2.1312E-32 25573 TMT1-8 153.92 124.12 433.27 606.32 425.96 332.37 504.5 642.26 409 604 443 336 518 616 3 3 3 3 3 3 124030 18769 1075 18548 28805 37235;37236;37237 37236 3 VAVLGNVDSGK Unmodified 1057.5768 0.57677356 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 7 0 2 51.645 51.645 2;3 7.591E-07 14151 TMT1-6 145.99 95.109 169.34 240.77 189.64 160.01 189.61 234.44 160 240 196 160 196 225 2 2 2 2 2 2 24179 18770 2563 18549 28806;28807 37238;37239 37239 2 VAVNDAHLLQYNHR Unmodified 1648.8434 0.84338678 768 P17931 LGALS3 Galectin-3 yes yes 0 0 0 0 0 5 0 1 40.644 40.644 4 1.4119E-27 10309 TMT1-4 182.1 131.89 85.049 93.382 53.786 65.952 100.32 97.341 80 94 58 65 102 94 1 1 1 1 1 1 14766 18771 768 18550 28808 37240 37240 1 VAVPEFVWLAACCAVPGGGWAMGFVK Unmodified 2778.3484 0.34844065 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 9 0 1 99.657 99.657 4 1.8339E-05 30904 TMT1-8 54.235 40.219 39.46 11.724 30.586 21.819 21.482 15.377 37 14 30 22 22 15 1 1 1 1 1 1 3565.7 18772 333 18551 28809 37241 37241 1 VAVPLLSSGGQVAVLELR Unmodified 1807.0567 0.056733603 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 8 0 2 78.22 78.22 3 1.038E-07 24640 TMT1-7 70.942 58.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18773 1342 18552 28810;28811 37242;37243 37242 2 VAVQGDVVR Unmodified 941.52943 0.52942943 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 4 0 1 38.613 38.613 2 0.00070267 9771 TMT1-3 89.08 36.677 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18774 543 18553 28812 37244 37244 1 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFK Unmodified 4080.0977 0.097678304 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 0 7 0 1 104.84 104.84 5 0.024906 33537 TMT1-6 22.376 14.312 7.3952 15.353 6.457 3.5597 22.724 3.6156 7 15 7 4 22 4 1 1 1 1 1 1 2027.7 18775 1268 18554 28813 37245 37245 1 VAVVEYHDGSHAYIGLK Unmodified 1856.9421 0.94209778 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 2 50.31 50.31 3;4 7.369E-10 14286 TMT1-5 108.63 93.396 238.88 228.96 233.94 266.79 241.29 353.42 225 234 241 261 254 338 2 2 2 2 2 2 44321 18776 471 18555 28814;28815 37246;37247 37246 2 VAVVNQIAR Unmodified 968.57671 0.57671398 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7.5 0.5 1 1 44.985 44.985 2 7.4043E-06 11475 TMT1-7 130.77 42.737 68.773 102.61 76.428 81.45 76.279 106.56 65 102 80 80 80 102 1 1 1 1 1 1 15759 18777 1546 18556 28816;28817 37248;37249 37249 2 VAVYVPGSK Unmodified 918.51747 0.51746776 2573 Q9BY44-4;Q9BY44-3;Q9BY44 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 0 8 0 1 51.066 51.066 2 0.0016023 14027 TMT1-7 80.239 59.957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18778 2573 18557 28818 37250 37250 1 VAWVSHDSTVCLADADKK Unmodified 2000.9626 0.96257522 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 1 7 0.816 1 1 1 51.028 51.028 4 2.8116E-14 14026 TMT1-7 121.19 108.34 667.63 1071.7 857.99 764.93 718.68 984.73 632 1063 887 759 753 943 3 3 3 3 3 3 128470 18779 128 18558 28819;28820;28821 37251;37252;37253 37253 3 VAYVSFGPHAGK Unmodified 1231.635 0.63495714 1231 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 0 9 0 1 47.112 47.112 3 1.3067E-07 10626 TMT1-8 118.9 88.355 91.763 169.44 123.36 149.75 131.48 174.27 87 167 130 146 138 167 2 2 2 2 2 2 8568.4 18780 1231 18559 28822 37254;37255 37254 2 VCAFDNR Unmodified 880.38614 0.38613602 2279 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 0 5 0 1 37.508 37.508 2 0.026604 9046 TMT1-4 92.467 57.389 130.55 143.51 117.86 133.66 133.03 150.77 123 145 123 131 138 145 1 1 1 1 1 1 12002 18781 2279 18560 28823 37256 37256 1 VCALGGSK Unmodified 790.40072 0.40072345 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 5.75 2.77 1 2 1 40.905 40.905 2;3 0.0011257 9933 TMT1-6 74.255 38.637 1545.7 1971.5 1664.2 1297.1 1775.3 1883.1 1459 1977 1708 1308 1816 1814 4 4 4 4 4 4 298230 18782 250 18561 28824;28825;28826;28827 37257;37258;37259;37260;37261 37259 5 VCALYIMAGTVDDVPK Unmodified 1750.8634 0.86337845 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 0 8 0 1 75.846 75.846 3 0.037781 23787 TMT1-7 39.005 19.427 46.415 73.342 71.771 57.937 62.718 76.028 44 73 73 58 65 73 1 1 1 1 1 1 5379.4 18783 1759 18562 28828 37262 37262 1 VCDATYDKAPVEK Unmodified 1494.7024 0.70244436 1660 Q12974;Q12974-4;Q12974-2 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 0 0 0 0 1 5 0 1 43.847 43.847 3 0.00011024 11578 TMT1-4 97.273 58.485 153.05 256.45 208.26 135.72 143.56 267.73 145 254 213 138 152 255 1 1 1 1 1 1 15253 18784 1660 18563 28829 37263 37263 1 VCDSCYDSIKDEDR Unmodified 1760.6982 0.69816361 2140 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 0 0 0 0 1 3 0 1 42.864 42.864 3 0.0082006 12471 TMT1-2 54.393 32.239 108.42 114.85 75.504 81.234 90.691 113.61 102 116 80 80 94 109 1 1 1 1 1 1 11841 18785 2140 18564 28830 37264 37264 1 VCEDLDTSVNLAWTSGTNCTR Unmodified 2398.0529 0.052923146 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 5 0 1 66.334 66.334 3 1.5135E-05 20459 TMT1-4 68.88 65.161 30.851 28.431 20.614 29.816 34.71 45.914 29 29 22 29 36 44 1 1 1 1 1 1 10485 18786 1119 18565 28831 37265 37265 1 VCEETSL Unmodified 836.35858 0.35858386 2371 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 0 2 0 1 47.839 47.839 2 0.0013047 14063 TMT1-1 103.41 97.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18787 2371 18566 28832 37266 37266 1 VCELDENNTPMCVCQDPTSCPAPIGEFEK Unmodified 3396.4077 0.40768396 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 4 0 2 68.503 68.503 4;5 2.9472E-13 21563 TMT1-3 87.489 83.674 115.07 198.29 149.01 91.037 150.15 166.28 109 196 153 94 153 160 2 2 2 2 2 2 27602 18788 590 18567 28833;28834 37267;37268 37268 2 VCENIPIVLCGNK Unmodified 1514.7585 0.75851945 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 7 0 1 62.375 62.375 3 4.0955E-05 18382 TMT1-6 100.02 74.636 108.05 137.58 117.62 149.55 102.56 346.72 102 138 123 145 116 328 1 1 1 1 1 1 32805 18789 1445 18568 28835 37269 37269 1 VCEPCYEQLNR Unmodified 1466.6282 0.62823356 116 O14964-2;O14964 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 0 3 0 1 43.843 43.843 2 0.019587 12832 TMT1-2 72.243 63.514 30.776 44.412 19.661 29.709 43.384 37.138 29 44 22 29 44 36 1 1 1 1 1 1 5440.4 18790 116 18569 28836 37270 37270 1 VCEVDNELR Unmodified 1132.5183 0.5182724 3006 Q9Y3Z3;Q9Y3Z3-4 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 2 0 2 42.833 42.833 2;3 7.8193E-07 12023 TMT1-1 166.61 119.53 208.03 412.24 214.47 266.14 337.62 412.5 197 404 233 261 348 396 3 3 3 3 3 3 70814 18791 3006 18570 28837;28838 37271;37272;37273 37271 3 VCFGIQLLNAVSR Unmodified 1475.7919 0.79186849 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 0 9 0 1 77.271 77.271 2 7.6347E-06 22567 TMT1-8 106.67 62.318 38.043 58.33 48.837 59.57 48.534 60.443 36 58 51 58 51 58 1 1 1 1 1 1 20224 18792 2482 18571 28839 37274 37274 1 VCGDSDKGFVVINQK Unmodified 1664.8192 0.81920545 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 1 7 0 1 51.476 51.476 3 0.00071379 14129 TMT1-6 75.669 65.92 54.105 64.692 49.057 44.242 49.239 60.423 51 65 51 44 51 58 1 1 1 1 1 1 8279.6 18793 1068 18572 28840 37275 37275 1 VCGLCGNFDGIQNNDLTSSNLQVEEDPVDFGNSWK Unmodified 3927.7316 0.73159559 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 80.636 80.636 4 7.2578E-05 26222 TMT1-5 49.209 44.4 15.941 14.659 13.531 14.75 44.585 22.18 15 15 14 15 44 22 1 1 1 1 1 1 5110 18794 471 18573 28841 37276 37276 1 VCHAHPTLSEAFR Unmodified 1523.7303 0.73033086 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 35.412 35.412 4 0.00054491 6683 TMT1-8 69.815 47.729 106.67 160.52 150.95 99.407 163.91 180.81 101 160 153 102 167 174 2 2 2 2 2 2 9801.5 18795 600 18574 28842;28843 37277;37278 37278 2 VCHANPSER Unmodified 1068.4771 0.47707629 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 3 0 1 19.909 19.909 3 0.0012205 3460 TMT1-2 95.358 63.936 11.646 14.946 13.702 11.007 10.608 11.423 11 15 14 11 11 11 1 1 1 1 1 1 1084.5 18796 1286 18575 28844 37279 37279 1 VCLDIIYK Unmodified 1022.5471 0.54705333 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 7 0 1 65.354 65.354 2 0.028022 19556 TMT1-6 83.206 26.795 53.716 118.65 68.689 65.252 90.363 144.53 51 116 73 65 94 138 1 1 1 1 1 1 9913.5 18797 1507 18576 28845 37280 37280 1 VCLHVQK Unmodified 882.47456 0.47455709 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 8 0 1 38.703 38.703 3 0.0024651 9121 TMT1-7 103.29 53.246 641.44 952.05 672.31 652.29 438.68 912.77 606 946 704 641 478 868 1 1 1 1 1 1 29969 18798 647 18577 28846 37281 37281 1 VCLLGCGISTGYGAAVNTAK Unmodified 2010.9867 0.98668148 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 9 0 1 65.331 65.331 3 4.1627E-40 17814 TMT1-8 150.91 120.93 92.13 146.71 80.941 88.139 113.15 120.43 87 145 87 87 116 116 1 1 1 1 1 1 37191 18799 660 18578 28847 37282 37282 1 VCLLGDTGVGK Unmodified 1117.5801 0.58014438 1733 Q13636;Q9UL26 RAB31;RAB22A Ras-related protein Rab-31;Ras-related protein Rab-22A yes no 0 0 0 0 0 7 0 1 57.614 57.614 2 1.0894E-08 16546 TMT1-6 163.16 102.64 85.092 93.501 46.507 59.173 77.047 114 80 94 51 58 80 109 1 1 1 1 1 1 9163.5 18800 1733 18579 28848 37283 37283 1 VCLNLPYFLR Unmodified 1293.6904 0.69036353 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 75.492 75.492 2 0.0052997 21794 TMT1-8 91.064 52.042 30.552 42.709 58.82 27.384 42.941 53.141 29 43 58 29 44 51 1 1 1 1 1 1 5036.8 18801 1977 18580 28849 37284 37284 1 VCMEETLWLQDNIR Unmodified 1805.844 0.84403999 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 5 0 1 70.179 70.179 3 0.00017948 21932 TMT1-4 79.639 75.671 23.302 36.395 20.173 29.852 34.195 60.852 22 36 22 29 36 58 1 1 1 1 1 1 6421.5 18802 856 18581 28850 37285 37285 1 VCMYFTYK Unmodified 1110.4878 0.48782389 1845 Q15369-2;Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 0 0 9 0 1 61.612 61.612 2 0.0069146 16357 TMT1-8 121.99 86.575 99.764 131.43 73.139 112.97 96.032 159.29 94 131 80 109 102 152 1 1 1 1 1 1 11293 18803 1845 18582 28851 37286 37286 1 VCNEVVDTCLYK Unmodified 1498.6796 0.67960042 1031 P35813-3;P35813;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 0 5 0 2 55.784 55.784 2;3 7.6809E-11 16284 TMT1-4 165.66 138.55 229.88 367.8 366.01 297.8 382.65 368.58 218 366 372 299 391 356 2 2 2 2 2 2 34418 18804 1031 18583 28852;28853 37287;37288 37288 2 VCNFLASQVPFPSR Unmodified 1620.8082 0.80824683 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 9 0 1 68.271 68.271 3 3.5264E-17 18967 TMT1-8 148.57 121.21 85.332 62.87 32.064 60.295 63.159 60.026 80 65 36 58 65 58 1 1 1 1 1 1 25295 18805 2485 18584 28854 37289 37289 1 VCNPIITK Unmodified 943.51609 0.51608756 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 0 5.33 3.09 1 1 1 49.221 49.221 2 0.00086817 13248 TMT1-7 147.29 104.04 1357.8 2015.5 1635.6 1292.8 1625.5 2076 1284 2006 1683 1300 1679 1991 4 4 4 4 4 4 405690 18806 641 18585 28855;28856;28857 37290;37291;37292;37293 37293 4 VCNYGLTFTQK Unmodified 1329.6387 0.63872189 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 8 0 1 57.263 57.263 3 2.6419E-05 16432 TMT1-7 111.5 100.06 342.77 622.27 473.58 345.07 549.93 612.18 325 614 488 351 561 589 2 2 2 2 2 2 110100 18807 2959 18586 28858 37294;37295 37294 2 VCNYVNWIQQTIAAN Unmodified 1792.8567 0.85665359 24 CON__P00761 yes yes 0 0 0 0 0 9 0 1 88.33 88.33 3 0.00060511 26763 TMT1-8 59.607 42.728 70.324 48.826 41.657 59.861 55.85 60.234 66 51 44 58 58 58 2 2 2 2 2 2 27928 + 18808 24 18587 28859 37296;37297 37296 2 VCQSLINLDGK Unmodified 1245.6387 0.63872189 2178 Q8N4L2 TMEM55A Type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase yes yes 0 0 0 0 0 7 0 1 59.112 59.112 3 0.0020951 17124 TMT1-6 55.578 4.1246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18809 2178 18588 28860 37298 37298 1 VCSTLLGLEEHLNALDR Unmodified 1938.9833 0.98331066 1928 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 0 0 6 0 1 71.638 71.638 3 2.4033E-20 22676 TMT1-5 119.99 102.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18810 1928 18589 28861 37299 37299 1 VCSTNDLK Unmodified 935.43823 0.43823117 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 5 0 1 38.862 38.862 2 0.017693 9599 TMT1-4 90.64 61.554 68.841 86.614 78.486 56.801 101.8 66.385 65 87 80 58 102 65 1 1 1 1 1 1 8763 18811 606 18590 28862 37300 37300 1 VCTLAIIDPGDSDIIR Unmodified 1756.9029 0.90293508 1455 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 0 5 0 1 72.003 72.003 2 4.4812E-11 22646 TMT1-4 124.12 80.514 15.698 36.648 35.734 21.093 43.78 37.127 15 36 36 22 44 36 1 1 1 1 1 1 12174 18812 1455 18591 28863 37301 37301 1 VCVETVESGAMTK Unmodified 1409.6531 0.65305132 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 5 0 2 52.322 52.322 2;3 8.225E-47 14906 TMT1-4 217.83 201.19 253.68 280.21 226.98 157.96 180.53 258.15 239 283 233 160 188 247 2 2 2 2 2 2 59074 18813 1164 18592 28864;28865 37302;37303 37303 2 VDALGEALQTTVSR Unmodified 1458.7678 0.7678218 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 6 0 1 64.735 64.735 2 3.0329E-05 20008 TMT1-5 101.33 62.022 53.676 87.243 102.04 63.37 84.733 97.786 51 87 102 65 87 94 1 1 1 1 1 1 23173 18814 2263 18593 28866 37304 37304 1 VDALLSAQPK Unmodified 1040.5866 0.58660996 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 7 0 2 58.181 58.181 2;3 0.00069204 16826 TMT1-6 109.66 49.811 184.7 208.3 160.46 152.71 205.14 248.92 174 210 167 152 211 239 2 2 2 2 2 2 40920 18815 2789 18594 28867;28868 37305;37306 37306 2 VDALNDEIR Unmodified 1043.5247 0.52473799 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 0 2 0 1 48.884 48.884 2 0.011644 14461 TMT1-1 86.67 40.655 84.926 109.23 61.106 50.344 93.43 75.152 80 109 65 51 94 73 1 1 1 1 1 1 6935.1 18816 2944 18595 28869 37307 37307 1 VDAQDETAAEFTLR Unmodified 1564.7369 0.73691561 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 2 0 2 56.653 56.653 2;3 0.00062516 17541 TMT1-1 84.173 78.68 68.919 79.275 71.655 50.001 78.238 91.575 65 80 73 51 80 88 2 2 2 2 2 2 21457 18817 3051 18596 28870;28871 37308;37309 37308 2 VDAQFGGIDQR Unmodified 1204.5836 0.58364985 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 47.973 47.973 2 4.6581E-05 13469 TMT1-3 115.91 80.691 169.63 186.53 187.11 119.93 178.25 223.04 160 189 189 123 183 214 1 1 1 1 1 1 41883 18818 1297 18597 28872 37310 37310 1 VDASVAVFCEIQNTLINTLIR Unmodified 2375.2519 0.25188095 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 109.23 109.23 3 1.2064E-32 33942 TMT1-8 145.71 125.18 13.722 24.319 17.466 10.82 8.5959 9.3487 13 24 18 11 9 9 2 2 2 2 2 2 4352.3 18819 1120 18598 28873 37311;37312 37312 2 VDATADYICK Unmodified 1154.5278 0.52777445 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 5 0 1 52.035 52.035 3 0.0040632 14809 TMT1-4 75.387 34.198 153.57 199.6 170.17 119.95 230.84 244.99 145 200 174 123 234 236 1 1 1 1 1 1 17723 18820 1283 18599 28874 37313 37313 1 VDATAETDLAK Unmodified 1132.5612 0.56118307 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 3 0.707 1 2 1 48.364 48.364 2;3 2.2317E-08 14550 TMT1-2 158.79 75.79 363 397.74 329.59 331.41 338.19 338.93 342 402 342 327 349 327 4 4 4 4 4 4 73998 18821 686 18600 28875;28876;28877;28878 37314;37315;37316;37317;37318 37317 5 VDATAETDLAKR Unmodified 1288.6623 0.6622941 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 4 0 1 41.773 41.773 3 0.013616 11074 TMT1-3 61.03 27.144 99.486 130.66 120.61 92.771 147.96 197.25 94 131 123 94 152 189 1 1 1 1 1 1 22669 18822 686 18601 28879 37319 37319 1 VDATEESDLAQQYGVR Unmodified 1779.8275 0.82752153 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 2 0.816 1 1 1 55.617 55.617 2;3 4.6572E-55 17242 TMT1-1 222.45 201.18 169.02 300.34 191.9 174.99 257.77 239.96 160 296 202 175 262 232 4 4 4 4 4 4 162870 18823 530 18602 28880;28881;28882 37320;37321;37322;37323 37322 4 VDAVHLLK Unmodified 893.53345 0.53345218 2747 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 0 7 0 1 51.395 51.395 3 0.020995 14056 TMT1-6 62.2 11.322 161.43 195.75 114.24 141.14 153.6 212.02 152 196 123 138 160 203 1 1 1 1 1 1 10594 18824 2747 18603 28883 37324 37324 1 VDCDQHSDIAQR Unmodified 1442.6208 0.62083999 2521 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 0 2 0 1 28.655 28.655 3 0.00010774 6441 TMT1-1 98.105 85.478 84.919 109.21 62.185 50.427 85.584 90.3 80 109 66 51 87 87 2 2 2 2 2 2 10703 18825 2521 18604 28884 37325;37326 37325 2 VDCTAHSDVCSAQGVR Unmodified 1760.757 0.7570159 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 3.5 0.5 1 1 32.394 32.394 3 4.1999E-13 8266 TMT1-2 129.29 104.6 53.95 57.785 80.948 42.039 65.302 52.503 51 59 80 44 66 51 2 2 2 2 2 2 25911 18826 2205 18605 28885;28886 37327;37328;37329 37327 3 VDCTANTNTCNK Unmodified 1396.5711 0.57111261 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 4.5 0.5 1 1 33.134 33.134 3 8.3142E-11 7570 TMT1-3 158.04 138.46 425.27 205.61 305.67 221.28 341.77 199.18 399 225 305 225 343 196 2 2 2 2 2 2 40600 18827 955 18606 28887;28888 37330;37331 37330 2 VDCTQHYELCSGNQVR Unmodified 1964.8469 0.84689354 2205 Q8NBS9-2;Q8NBS9 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 0 4 0 1 38.556 38.556 3 2.7413E-05 9757 TMT1-3 82.813 72.328 22.973 66.778 49.816 27.906 43.723 29.666 22 65 51 29 44 29 1 1 1 1 1 1 10474 18828 2205 18607 28889 37332 37332 1 VDDDFTAQDYR Unmodified 1343.563 0.56297399 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 0 2 0 1 48.55 48.55 2 1.8295E-06 14340 TMT1-1 136.36 118.05 77.19 147.97 66.082 81.634 99.305 105.9 73 145 73 80 102 102 1 1 1 1 1 1 19750 18829 2135 18608 28890 37333 37333 1 VDDFLANEAK Unmodified 1120.5401 0.5400537 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 4.33 0.471 2 1 58.792 58.792 2;3 5.3273E-05 17735 TMT1-3 145.89 60.156 805.59 1179.8 1023.6 797.67 952.24 1145.4 762 1176 1048 802 983 1100 4 4 4 4 4 4 186820 18830 1260 18609 28891;28892;28893 37334;37335;37336;37337 37334 4 VDDLLIIEEK Unmodified 1185.6493 0.6492698 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 4 0 1 71.857 71.857 2 0.0014479 22834 TMT1-3 102.52 71.45 22.991 51.718 59.537 0 58.859 52.686 22 51 58 0 58 51 1 1 1 0 1 1 7360.7 18831 1763 18610 28894 37338 37338 1 VDDNEETIK Unmodified 1061.4877 0.48768378 398 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 0 2 0 1 41.316 41.316 2 0.0021203 11482 TMT1-1 105.86 39.793 61.643 80.443 31.114 60.628 48.485 60.444 58 80 36 58 51 58 1 1 1 1 1 1 6024.3 18832 398 18611 28895 37339 37339 1 VDDPELQDSIQASLDSIR Unmodified 1999.9698 0.96982867 2467 Q99490-2 AGAP2 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 yes yes 0 0 0 0 0 4 0 1 73.746 73.746 3 4.485E-08 23607 TMT1-3 99.413 84.49 23.156 67.287 18.646 22.536 21.192 22.847 22 65 22 22 22 22 1 1 1 1 1 1 5680.7 18833 2467 18612 28896 37340 37340 1 VDDQIAIVFK Unmodified 1146.6285 0.62847478 1838 Q15257-2;Q15257;Q15257-3;Q15257-4 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 6 0 1 68.275 68.275 2 0.0037622 21355 TMT1-5 65.719 41.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18834 1838 18613 28897 37341 37341 1 VDDYEHAAK Unmodified 1046.4669 0.46688876 154 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 0 0 3 0 1 36.269 36.269 3 0.0017658 9826 TMT1-2 61.65 33.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18835 154 18614 28898 37342 37342 1 VDEFVTHNLSFDEINK Unmodified 1905.9109 0.91085723 660 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 0 5 0 2 66.479 66.479 3;4 7.7625E-29 20482 TMT1-4 184.48 163.02 162.21 218.61 144 146.6 175.57 234.84 153 218 152 145 182 225 2 2 2 2 2 2 43580 18836 660 18615 28899;28900 37343;37344 37343 2 VDEIFGQLR Unmodified 1075.5662 0.56620887 2781 Q9NY12-2;Q9NY12 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 0 0 6 0 1 65.787 65.787 2 0.0019552 20332 TMT1-5 109.48 53.762 53.941 80.424 63.318 42.973 71.525 83.239 51 80 65 44 73 80 1 1 1 1 1 1 15965 18837 2781 18616 28901 37345 37345 1 VDEIVVLSGDNSK Unmodified 1373.7038 0.70382456 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 5 0 1 62.635 62.635 2 1.0752E-21 18952 TMT1-4 156.71 128.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18838 1767 18617 28902 37346 37346 1 VDELTTDLEILK Unmodified 1387.7446 0.74462675 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 4 0 1 78.232 78.232 3 0.00015181 25376 TMT1-3 95.018 53.735 46.217 95.456 86.333 41.319 86.516 75.349 44 94 87 44 87 73 2 2 2 2 2 2 9069.8 18839 1762 18618 28903 37347;37348 37348 2 VDELTTDLEILKAEIEEK Unmodified 2087.0885 0.088546821 1762 Q14203-3;Q14203-4;Q14203-6;Q14203;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 1 5 0 1 93.063 93.063 4 0.0017436 30780 TMT1-4 55.437 41.421 30.654 51.629 34.005 38.049 19.416 53.812 29 51 36 37 22 51 1 1 1 1 1 1 2170.1 18840 1762 18619 28904 37349 37349 1 VDEVGGEALGR Unmodified 1100.5462 0.54620171 34;25 CON__Q3SX09;CON__P02070 no no 0 0 0 0 0 2 0 1 44.94 44.94 2 3.3081E-12 12907 TMT1-1 177.78 107.87 92.537 77.695 70.915 66.059 40.372 45.752 87 80 73 65 43 44 1 1 1 1 1 1 16460 + 18841 34;25 18620 28905 37350 37350 1 VDEVPDGAVKPPTNK Unmodified 1564.8097 0.80968662 279 O75475;O75475-3;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 1 5 0 1 46.592 46.592 3 2.1117E-10 12616 TMT1-4 121.42 103.01 84.517 139.39 104.19 111.4 81.462 128.79 80 138 109 109 87 123 1 1 1 1 1 1 12153 18842 279 18621 28906 37351 37351 1 VDFEQLTENLGQLER Unmodified 1789.8846 0.88464248 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 77.766 77.766 3 7.1246E-15 24918 TMT1-4 131.61 83.394 115.97 91.8 87.343 88.826 114.42 112.93 109 95 87 88 117 109 3 3 2 3 3 3 45807 18843 3042 18622 28907;28908 37352;37353;37354 37354 3 VDFNVPMK Unmodified 948.47389 0.47388839 397 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 0 7.33 0.471 2 1 59.46 59.46 2;3 0.003606 17402 TMT1-7 78.516 41.959 334.22 738.43 369.49 413.19 512.35 701.73 317 721 401 407 531 672 2 2 2 2 2 2 138100 18844 397 18623 28909;28910;28911 37355;37356;37357 37357 3 VDFPQDQLTALTGR Unmodified 1559.7944 0.79437091 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5.67 0.471 1 2 67.281 67.281 2;3 1.049E-21 20943 TMT1-5 172.92 145.97 323.26 437.04 302.91 347.53 379.25 431.57 305 436 320 341 392 415 5 5 5 5 5 5 99039 18845 1075 18624 28912;28913;28914 37358;37359;37360;37361;37362 37360 5 VDFSITK Unmodified 808.43307 0.43306943 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 0 7 0 1 56.384 56.384 2 0.0088226 16096 TMT1-6 114.93 47.175 183.11 385.2 277.98 239.74 319.41 399.16 174 378 289 240 329 383 1 1 1 1 1 1 52378 18846 1465 18625 28915 37363 37363 1 VDFTEEEINNMK Unmodified 1467.6552 0.65515981 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 61.844 61.844 3 0.00016865 18948 TMT1-3 93.839 64.54 53.89 80.282 72.038 41.743 109.27 82.162 51 80 73 44 109 80 1 1 1 1 1 1 12306 18847 1139 18626 28916 37364 37364 1 VDFTEEEISNMR Unmodified 1468.6504 0.65040879 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 2 0 1 59.778 59.778 3 1.5139E-07 18770 TMT1-1 103.44 82.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18848 1723 18627 28917 37365 37365 1 VDGAEWGVDLPSVEAQLGSHR Unmodified 2221.0764 0.076359426 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 2 67.929 67.929 3;4 4.2881E-11 21056 TMT1-4 102.89 89.855 192.94 254.25 179.38 175.27 224.22 302.74 182 254 188 174 232 290 3 3 3 3 3 3 28265 18849 1833 18628 28918;28919 37366;37367;37368 37368 3 VDGMDILCVR Unmodified 1176.5631 0.5631141 566 P08559-3;P08559;P08559-2;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 0 5 0 1 63.755 63.755 2 0.022833 19352 TMT1-4 74.424 48.252 54.212 42.324 50.054 51.969 42.067 45.704 51 44 51 51 44 44 1 1 1 1 1 1 8544.5 18850 566 18629 28920 37369 37369 1 VDGVAAALDSFQAR Unmodified 1418.7154 0.7153923 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 6.5 0.5 1 1 67.971 67.971 3 0.00012741 21182 TMT1-5 83.692 56.593 76.559 185.07 140.57 108.52 119.03 135.18 73 181 145 109 123 130 3 3 3 3 3 3 25477 18851 1081 18630 28921;28922 37370;37371;37372 37370 3 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK Unmodified 3314.6221 0.62210763 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 7 0 1 64.379 64.379 5 0.00021612 19194 TMT1-6 45.836 38.269 61.333 94.691 71.113 42.252 85.154 113.76 58 94 73 44 87 109 1 1 1 1 1 1 14012 18852 516 18631 28923 37373 37373 1 VDIDAPDVDVHGPDWHLK Unmodified 2026.9749 0.97485447 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4.67 0.471 1 2 59.826 59.826 4;5 1.01E-14 18139 TMT1-3 126.19 109.11 698.96 1107.7 610.77 530.41 779.48 898.78 660 1095 651 532 798 864 4 4 4 4 4 4 197780 18853 1632 18632 28924;28925;28926 37374;37375;37376;37377 37374 4 VDIDAPDVEVHDPDWHLK Unmodified 2098.996 0.99598384 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 59.797 59.797 4 5.4565E-08 18140 TMT1-3 96.666 80.172 176.51 285.73 208.27 166.32 201.74 238.36 167 283 216 167 208 229 1 1 1 1 1 1 48017 18854 1632 18633 28927 37378 37378 1 VDIDAPDVSIEGPDAK Unmodified 1639.7941 0.79409613 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2 0 1 62.539 62.539 3 0.00074608 19891 TMT1-1 66.673 54.118 23.297 28.826 27.478 46.091 19.303 46.353 22 29 29 44 22 44 1 1 1 1 1 1 6404.7 18855 1632 18634 28928 37379 37379 1 VDIDTPDIDIHGPEGK Unmodified 1719.8315 0.83154427 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3.5 0.5 1 1 57.716 57.716 3 3.175E-18 17260 TMT1-3 145.69 113.86 214.5 386.01 229.89 148.91 187.19 319.79 203 380 241 152 196 305 2 2 2 2 2 2 48871 18856 1632 18635 28929;28930 37380;37381 37381 2 VDIDVPDVDVQGPDWHLK Unmodified 2046.0058 0.0058202445 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 5 0 2 69.947 69.947 3;5 7.3786E-25 21812 TMT1-4 145.62 112.93 169.47 233.59 173.45 168.79 180.83 234.69 160 233 181 167 188 225 2 2 2 2 2 2 44195 18857 1632 18636 28931;28932 37382;37383 37382 2 VDIDVPDVNIEGPDAK Unmodified 1694.8363 0.8362953 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 1 1 1 67.586 67.586 3;4 7.0098E-07 21770 TMT1-1 99.344 0 77.113 163.95 65.477 73.712 115.63 97.97 73 160 73 73 117 95 2 2 2 2 2 2 23389 18858 1632 18637 28933;28934 37384;37385 37384 2 VDIDVPDVNIEGPEGK Unmodified 1694.8363 0.8362953 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 4 0 1 67.401 67.401 3 4.6027E-09 21061 TMT1-3 113.69 6.8654 184.11 285.45 194.19 190.37 246.53 303.17 174 283 204 189 254 291 2 2 2 2 2 2 57522 18859 1632 18638 28935 37386;37387 37386 2 VDIDVPDVNLEAPEGK Unmodified 1708.8519 0.85194536 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 68.534 68.534 3 1.5979E-11 21528 TMT1-3 119.56 98.894 107.48 245 122.36 93.031 186.7 165.23 102 239 131 95 188 160 2 2 2 2 2 2 31300 18860 1632 18639 28936 37388;37389 37388 2 VDIDVPDVNVQGPDWHLK Unmodified 2045.0218 0.02180466 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 68.774 68.774 4 8.4316E-05 21525 TMT1-5 73.498 41.317 30.587 75.185 25.411 29.223 50.992 29.459 29 73 29 29 51 29 1 1 1 1 1 1 4480.3 18861 1632 18640 28937 37390 37390 1 VDIEGPDVNIEGPEGK Unmodified 1666.805 0.80499517 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 2.5 0.5 1 1 60.932 60.932 3 1.5979E-11 19504 TMT1-2 119.56 95.516 192.56 284.51 216.28 204.94 273.18 177.69 182 283 225 204 276 174 3 3 3 3 3 3 44961 18862 1632 18641 28938;28939 37391;37392;37393 37392 3 VDIETPNLEGTLTGPR Unmodified 1710.8788 0.87882882 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 63.962 63.962 3 6.9819E-09 19775 TMT1-3 92.977 79.576 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18863 1632 18642 28940 37394 37394 1 VDIGDTIIYLVH Unmodified 1356.7289 0.7289171 2829 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 82.742 82.742 2 1.609E-05 26796 TMT1-4 114.89 85.421 15.588 60.087 34.306 21.607 20.978 30.315 15 58 36 22 22 29 1 1 1 1 1 1 6186.7 18864 2829 18643 28941 37395 37395 1 VDIIPGFEFDR Unmodified 1306.6558 0.65575216 2648 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 0 0 5 0 1 74.829 74.829 2 0.043242 23728 TMT1-4 63.624 50.271 77.075 132.54 98.46 79.983 84.482 82.869 73 131 102 80 87 80 1 1 1 1 1 1 10354 18865 2648 18644 28942 37396 37396 1 VDILDPALLR Unmodified 1123.6601 0.66010926 769 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 0 6 0 1 72.398 72.398 2 0.0047216 22904 TMT1-5 92.051 47.332 146.3 126.32 191.17 112.47 155.68 189.57 138 131 189 116 160 182 2 2 2 2 2 2 30527 18866 769 18645 28943 37397;37398 37397 2 VDINAPDVDVHGPDWHLK Unmodified 2025.9908 0.99083888 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 58.695 58.695 4 2.4527E-05 17375 TMT1-4 77.899 60.41 160.96 219.26 173.68 183.96 187.48 203.59 152 219 181 181 194 196 1 1 1 1 1 1 36219 18867 1632 18646 28944 37399 37399 1 VDINAPDVDVQGPDWHLK Unmodified 2016.9905 0.99050453 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 5 0 1 64.558 64.558 3 5.403E-15 19704 TMT1-4 128.14 112.72 68.434 164.27 81.092 63.767 129.98 119.95 65 160 87 65 131 116 1 1 1 1 1 1 37526 18868 1632 18647 28945 37400 37400 1 VDINAPDVDVR Unmodified 1211.6146 0.61461563 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2.5 0.5 1 1 52.57 52.57 2 1.739E-08 15973 TMT1-1 160.67 115.85 145.94 211.68 178.44 113.37 147.82 173.8 138 211 182 116 152 167 2 2 2 2 2 2 42619 18869 1632 18648 28946;28947 37401;37402 37401 2 VDINAPDVEVHGPDWHLK Unmodified 2040.0065 0.0064889465 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 58.557 58.557 4 8.8387E-09 17327 TMT1-4 103.17 80.518 129.7 254.46 167.28 113.76 162.44 204.3 123 250 174 116 167 196 1 1 1 1 1 1 36986 18870 1632 18649 28948 37403 37403 1 VDINAPDVEVQGK Unmodified 1382.7042 0.70415892 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 55.432 55.432 2 3.4393E-10 16412 TMT1-3 132.79 118.49 114.89 197.8 179.42 113.42 200.15 203.22 109 196 182 117 203 196 2 2 2 2 2 2 15680 18871 1632 18650 28949 37404;37405 37404 2 VDINTEDLEDGTCR Unmodified 1635.7046 0.7046292 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 1.67 0.471 1 2 53.03 53.03 2;3 1.2176E-18 16175 TMT1-1 155.17 125.11 164.88 247.08 212.01 135.69 191.58 209.87 156 246 216 139 196 202 3 3 3 3 3 3 147170 18872 831 18651 28950;28951;28952 37406;37407;37408 37408 3 VDIRPQLLK Unmodified 1080.6655 0.66552898 1970 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 1 8 0 1 52.249 52.249 3 0.0045124 14448 TMT1-7 84.817 34.694 551.73 748.75 593.18 526.63 629.32 677.07 521 748 614 525 647 652 2 2 2 2 2 2 90854 18873 1970 18652 28953 37409;37410 37409 2 VDISAPDVDVHGPDWHLK Unmodified 1998.9799 0.97993984 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 59.595 59.595 4 1.925E-14 17715 TMT1-4 123.14 94.182 161.06 290.77 96.133 79.625 110.87 198.31 152 285 109 80 116 189 1 1 1 1 1 1 33681 18874 1632 18653 28954 37411 37411 1 VDISLENPGTSPALEAYSETAK Unmodified 2291.1169 0.11688684 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 4 0 2 69.078 69.078 3;4 1.6415E-17 21797 TMT1-3 109.05 100.45 84.749 77.438 117.66 62.28 93.159 97.546 80 80 116 65 95 94 2 2 2 2 2 2 24664 18875 758 18654 28955;28956 37412;37413 37413 2 VDIVAINDPFIDLNYMVYMFQYDSTHGK Unmodified 3307.557 0.55697268 472 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 0 0 0 0 0 8 0 1 101.84 101.84 4 0.00015259 33089 TMT1-7 51.568 45.273 2.0919 5.0992 4.7691 7.2815 4.5339 10.531 2 5 5 7 5 10 1 1 1 1 1 1 2010.6 18876 472 18655 28957 37414 37414 1 VDIWSLGITCIELAER Unmodified 1873.9608 0.96078431 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 7 0 1 88.733 88.733 3 4.6923E-06 28593 TMT1-6 90.754 54.362 23.224 21.067 46.371 21.05 12.335 39.09 22 22 45 22 14 37 2 2 2 2 2 2 2931.9 18877 2630 18656 28958 37415;37416 37415 2 VDKGVVPLAGTDGETTTQGLDGLSER Unmodified 2614.3086 0.30860379 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 1 4.4 0.49 3 2 60.428 60.428 3;4 1.2781E-44 18167 TMT1-4 153.27 132.07 607.94 814.28 647.6 692.07 668.51 807.07 574 814 675 680 696 775 5 5 5 5 5 5 218420 18878 609 18657 28959;28960;28961;28962;28963 37417;37418;37419;37420;37421;37422 37421 6 VDKLDASESLR Unmodified 1231.6408 0.64083038 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 5 0 1 45.243 45.243 3 0.00017815 12104 TMT1-4 103.14 47.414 747.85 1078.4 894.91 792.45 1056.4 891.95 707 1075 923 792 1074 865 1 1 1 1 1 1 92284 18879 1540 18658 28964 37423 37423 1 VDLEGEREVSYGEGK Unmodified 1665.7846 0.78459408 1385 P61225 RAP2B Ras-related protein Rap-2b yes yes 0 0 0 0 1 2.5 0.5 1 1 46.768 46.768 3 1.9786E-07 13898 TMT1-2 107.5 84.693 293.34 305.43 213.13 236.03 257.44 350.83 276 309 225 232 268 336 2 2 2 2 2 2 28919 18880 1385 18659 28965;28966 37424;37425 37425 2 VDLGGFAGLFDLK Unmodified 1350.7184 0.71835242 842 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 0 8 0 1 88.861 88.861 2 0.00061163 28682 TMT1-7 91.202 63.581 69.415 33.166 27.387 37.069 34.376 45.923 65 36 29 36 36 44 1 1 1 1 1 1 4997.1 18881 842 18660 28967 37426 37426 1 VDLGTLR Unmodified 772.4443 0.44430282 474 P04439;P04439-2 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 0 0 0 0 0 6 0 1 48.321 48.321 2 0.0080481 13539 TMT1-5 120.52 33.238 176.35 321.98 204.49 348.08 197.04 284.33 167 317 222 333 213 272 1 1 1 1 1 1 83065 18882 474 18661 28968 37427 37427 1 VDLGVLGK Unmodified 799.48035 0.48035398 1043 P36871;P36871-2 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 0 7 0 1 61.525 61.525 2 0.0018741 18066 TMT1-6 139.68 61.931 739.7 1048.9 846 716.52 889.75 941.47 699 1046 873 717 913 907 1 1 1 1 1 1 81545 18883 1043 18662 28969 37428 37428 1 VDLITLSYTFFEAK Unmodified 1645.8603 0.86032521 3062 Q9Y6N1 COX11 Cytochrome c oxidase assembly protein COX11, mitochondrial yes yes 0 0 0 0 0 9 0 1 96.707 96.707 3 1.1986E-05 29855 TMT1-8 94.551 70.26 10.502 19.137 22.185 9.3913 11.51 17.794 10 19 22 10 12 17 1 1 1 1 1 1 2433.9 18884 3062 18663 28970 37429 37429 1 VDLPTWEAETIIQK Unmodified 1641.8614 0.86138784 2320 Q92835;Q92835-2;Q92835-3 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 yes no 0 0 0 0 0 6 0 1 73.81 73.81 3 2.172E-07 23507 TMT1-5 107.37 81.842 46.593 65.204 48.716 52.053 41.807 53.173 44 65 51 51 44 51 1 1 1 1 1 1 8841.7 18885 2320 18664 28971 37430 37430 1 VDLSNQLEEER Unmodified 1330.6365 0.63647328 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 2 0 1 49.768 49.768 2 0.018661 14884 TMT1-1 72.846 35.255 30.841 20.849 28.665 29.325 35.282 29.907 29 22 29 29 36 29 1 1 1 1 1 1 4634.9 18886 2851 18665 28972 37431 37431 1 VDLVDENFTELR Unmodified 1448.7147 0.7147236 1376 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 0 2.75 0.829 2 1 1 67.827 67.827 2;3 6.9538E-25 22251 TMT1-2 193.28 148.46 107.55 183.66 163.67 122.71 163.35 165.9 102 182 167 124 167 160 3 3 3 3 3 3 23776 18887 1376 18666 28973;28974;28975;28976 37432;37433;37434;37435 37434 4 VDLVDFEGNHQFAK Unmodified 1617.7787 0.77872084 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 0 6 0 2 60.194 60.194 3;4 1.3259E-07 18124 TMT1-5 111.12 70.063 268.33 488.78 293.53 300.26 365.23 324.3 254 481 312 297 373 314 2 2 2 2 2 2 53308 18888 84 18667 28977;28978 37436;37437 37436 2 VDLVLLGK Unmodified 855.54295 0.54295423 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 8 0 1 70.081 70.081 2 0.0025546 21469 TMT1-7 136.11 61.371 231.31 258.45 218.68 181.78 218.72 241.07 218 261 225 182 225 232 2 2 2 2 2 2 39432 18889 1055 18668 28979 37438;37439 37438 2 VDLWNASNLK Unmodified 1158.6033 0.60332266 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 8 0 2 64.204 64.204 2;3 0.00012385 19154 TMT1-7 111.27 64.374 300.41 329.61 265.96 255.54 331.1 403.09 283 333 276 254 341 387 3 3 3 3 3 3 64354 18890 1786 18669 28980;28981 37440;37441;37442 37440 3 VDNALQSGNSQESVTEQDSK Unmodified 2134.9614 0.96144883 418 P01834;P0DOX7 IGKC Ig kappa chain C region yes no 0 0 0 0 0 2.33 0.471 2 1 45.282 45.282 3;4 4.6481E-14 13095 TMT1-1 114.88 98.2 192.95 207.88 216.05 143.22 184.89 181.27 182 211 218 146 189 175 3 3 3 3 3 3 55844 18891 418 18670 28982;28983;28984 37443;37444;37445 37444 3 VDNDENEHQLSLR Unmodified 1567.7227 0.72266253 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 3 0.816 1 1 1 37.212 37.212 3 8.8127E-48 9925 TMT1-1 223.39 205.19 246.59 348.99 278.48 294.46 314.22 416.37 233 348 290 290 327 399 4 4 4 4 4 4 99684 18892 517 18671 28985;28986;28987 37446;37447;37448;37449 37446 4 VDNHLFNK Unmodified 985.49813 0.49812931 1152;1153;1503 P78356;P78356-2;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha no no 0 0 0 0 0 6.5 0.5 1 1 44.19 44.19 3 0.01297 11255 TMT1-6 69.825 43.441 253.8 411.32 276.09 263.38 289 278.51 240 407 290 261 297 269 3 3 3 3 3 3 36245 18893 1503;1152;1153 18672 28988;28989 37450;37451;37452 37451 3 VDNIQAGELTEGIWR Unmodified 1699.8529 0.85294842 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 5 0 2 67.603 67.603 2;3 0.00011621 20928 TMT1-4 90.444 74.553 68.935 86.875 62.522 74.75 69.808 90.75 65 87 66 73 73 87 2 2 2 2 2 2 17212 18894 1627 18673 28990;28991 37453;37454 37454 2 VDNSSLTGESEPQTR Unmodified 1618.7435 0.74345755 481 P05023-3;P05023-4;P05023;P05023-2;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 2 0 1 39.009 39.009 3 0.02319 10561 TMT1-1 46.162 28.726 68.285 108.81 153.11 100.52 97.924 120.86 65 109 152 102 102 116 1 1 1 1 1 1 8712.7 18895 481 18674 28992 37455 37455 1 VDNVNAFIER Unmodified 1175.5935 0.59348625 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 4.5 0.5 1 1 54.329 54.329 2 0.0036488 15709 TMT1-4 95.483 64.747 191.61 206.12 262.9 162.87 212.22 242.32 181 210 262 167 218 233 2 2 2 2 2 2 24640 18896 651 18675 28993;28994 37456;37457 37457 2 VDPALFPPVPLFTAVPSR Unmodified 1922.0666 0.066570008 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 9 0 1 87.684 87.684 3 6.0493E-09 26530 TMT1-8 90.654 50.994 69.31 194.95 88.22 56.665 78.225 83.048 66 189 95 58 80 80 2 2 2 2 2 2 9348 18897 1736 18676 28995 37458;37459 37458 2 VDPLETELGVK Unmodified 1198.6445 0.64451877 1590 Q05086-2;Q05086-3;Q05086 UBE3A Ubiquitin-protein ligase E3A yes no 0 0 0 0 0 4 0 1 63.522 63.522 3 0.0043207 19614 TMT1-3 70.488 34.064 61.759 64.575 25.158 45.668 49.173 60.425 58 65 29 44 51 58 1 1 1 1 1 1 5092.5 18898 1590 18677 28996 37460 37460 1 VDPVNFK Unmodified 817.4334 0.43340378 1499 P69905;CON__P01966;P02008 HBA1;HBZ Hemoglobin subunit alpha;Hemoglobin subunit zeta yes no 0 0 0 0 0 6 0 1 51.544 51.544 2 0.010617 14799 TMT1-5 107.32 50.215 14013 14832 12844 9092.5 3180.5 5940.7 13201 15030 13133 9074 3635 5658 1 1 1 1 1 1 1396800 18899 1499 18678 28997 37461 37461 1 VDQGTLFELILAANYLDIK Unmodified 2135.1514 0.15142185 1474 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 0 0 8.5 0.5 1 1 104.71 104.71 3 1.2615E-13 33564 TMT1-7 113.54 88.758 8.4465 34.311 13.866 20.503 28.212 34.373 8 33 14 20 29 33 2 3 2 3 3 3 4123.2 18900 1474 18679 28998;28999 37462;37463;37464 37462 3 VDQIIMAK Unmodified 916.50519 0.50518852 1232 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 0 7 0 1 58.642 58.642 2 0.0058689 16951 TMT1-6 112.94 87.943 122.07 263.28 179.29 221.73 195.01 238.55 116 258 190 216 204 229 1 1 1 1 1 1 19387 18901 1232 18680 29000 37465 37465 1 VDQIQEIVTGNPTVIK Unmodified 1752.9622 0.96216452 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 7 0 1 70.056 70.056 3 0.020195 21478 TMT1-6 45.608 18.579 99.762 131.43 73.469 105.56 82.5 106.38 94 131 80 102 87 102 1 1 1 1 1 1 10126 18902 1139 18681 29001 37466 37466 1 VDQLTAQLADLAAR Unmodified 1483.7995 0.79945628 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 5.8 2.48 1 1 2 1 75 75 2;3 7.3046E-44 23409 TMT1-6 217.24 168.82 514.4 486.26 597.54 446.61 570.08 498.9 485 499 600 451 581 483 6 6 6 6 6 5 468330 18903 776 18682 29002;29003;29004;29005;29006 37467;37468;37469;37470;37471;37472 37471 6 VDQSILTGESVSVIK Unmodified 1573.8563 0.85630246 748 P16615;P16615-5;P16615-2;P16615-3 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 6 0 1 65.721 65.721 2 5.639E-22 20320 TMT1-5 172.57 119.64 116.05 90.917 76.226 96.384 96.501 167.81 109 94 80 94 102 160 1 1 1 1 1 1 29757 18904 748 18683 29007 37473 37473 1 VDQSILTGESVSVTK Unmodified 1561.8199 0.81991695 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 5.6 0.49 2 3 59.968 59.968 2;3;4 7.1881E-22 18033 TMT1-5 170.56 146.18 506.95 740.95 731.49 522.23 657.94 732.76 480 740 741 529 676 705 6 6 6 6 6 6 237610 18905 2344 18684 29008;29009;29010;29011;29012 37474;37475;37476;37477;37478;37479 37477 6 VDQVQDIVTGNPTVIK Unmodified 1724.9309 0.93086439 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 64.693 64.693 2 0.00016539 19957 TMT1-5 81.185 60.882 54.388 34.178 27.408 36.924 42.005 37.177 51 36 29 36 43 36 1 1 1 1 1 1 6598.1 18906 1723 18685 29013 37480 37480 1 VDREQLVQK Acetyl (Protein N-term) 1155.6248 0.62478638 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 1 0 0 1 3 0.816 1 1 1 42.891 42.891 2 0.00017065 12410 TMT1-2 79.469 25.264 495.88 682.1 477.46 402.89 543.65 626.22 468 680 498 404 558 602 4 4 4 4 4 4 147810 18907 1411 18686 29014;29015;29016 37481;37482;37483;37484 37482 4 VDSAATSGYEIGNPPDYR Unmodified 1910.8646 0.86463532 877 P24666;P24666-4 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 0 3 0 1 52.461 52.461 3 6.3734E-20 16179 TMT1-2 140.26 131.76 53.752 103.64 75.393 105.01 105.3 113.19 51 102 80 102 109 109 2 2 2 2 2 2 26617 18908 877 18687 29017 37485;37486 37485 2 VDSDKEDDITELK Unmodified 1505.7097 0.7096978 1264 P52306-4;P52306;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 1 2.5 0.5 1 1 52.169 52.169 3 1.4171E-05 16054 TMT1-2 105 87.085 223.44 274.15 266.34 233.26 235.93 371.7 211 276 272 232 248 355 2 2 2 2 2 2 20404 18909 1264 18688 29018;29019 37487;37488 37488 2 VDSLETEEWFFK Unmodified 1528.7086 0.70857559 573 P08631-3;P08631-2;P08631-4;P08631 HCK Tyrosine-protein kinase HCK yes no 0 0 0 0 0 5 0 2 78.205 78.205 2;3 0.00072498 25125 TMT1-4 79.82 67.053 53.763 87.485 87.182 56.441 93.391 98.605 51 87 88 58 95 95 2 2 2 2 2 2 16334 18910 573 18689 29020;29021 37489;37490 37490 2 VDSLIPWIK Unmodified 1069.6172 0.61718181 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 9 0 1 78.42 78.42 2 0.0059876 22955 TMT1-8 82.279 42.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18911 2935 18690 29022 37491 37491 1 VDSLLENLEK Unmodified 1158.6132 0.61321864 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8;P07910-3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 0 5.33 0.471 2 1 71.312 71.312 2;3 2.9591E-05 22352 TMT1-4 150.1 75.183 338.75 474.2 372.59 310.29 510.83 426.75 320 473 385 313 516 414 4 4 4 4 4 4 58581 18912 547 18691 29023;29024;29025 37492;37493;37494;37495 37494 4 VDSPTVTTTLK Unmodified 1160.6289 0.62886871 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 6 0 1 49.044 49.044 3 0.0053143 13778 TMT1-5 67.153 38.949 122.36 207.97 177.35 121.22 140.67 158.02 116 206 181 123 145 152 1 1 1 1 1 1 9249.3 18913 1613 18692 29026 37496 37496 1 VDTDGNGYISFNELNDLFK Unmodified 2160.0011 0.0011287971 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 5.67 0.471 1 2 84.905 84.905 3;4 1.1223E-30 27889 TMT1-5 156.17 132.6 262.14 309.49 223.8 188.94 228.67 282.36 247 311 233 189 234 271 3 3 3 3 2 3 76809 18914 690 18693 29027;29028;29029 37497;37498;37499 37499 3 VDTILEFSQNMNTK Unmodified 1638.7923 0.792322 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 7 0 1 73.207 73.207 3 0.00011377 22643 TMT1-6 84.753 71.34 30.57 58.95 41.921 44.801 42.14 53.164 29 58 44 44 44 51 1 1 1 1 1 1 4452 18915 121 18694 29030 37500 37500 1 VDTNAPDLSLEGPEGK Unmodified 1640.7893 0.78934511 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 1 1 1 57.707 57.707 3 7.043E-16 17237 TMT1-3 132.64 98.676 145.85 254.6 157.44 162.62 153.11 258.93 138 251 167 160 160 247 2 2 2 2 1 2 35015 18916 1632 18695 29031;29032 37501;37502 37502 2 VDTPHYPR Unmodified 983.48248 0.48247924 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 3.5 0.5 1 1 31.965 31.965 3 0.00080698 8191 TMT1-2 127.02 71.345 207.99 245.76 180.83 176.77 198.01 180.9 196 247 189 175 203 175 4 4 4 4 4 4 15132 18917 1596 18696 29033;29034 37503;37504;37505;37506 37504 4 VDVASVIVTK Unmodified 1029.607 0.60701105 1368 P61011-2;P61011 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 0 0 7 0 1 61.976 61.976 2 0.0013372 18254 TMT1-6 74.841 41.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18918 1368 18697 29035 37507 37507 1 VDVAVNCAGIAVASK Unmodified 1472.7657 0.76571331 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 7 0 1 59.628 59.628 3 0.0044955 17287 TMT1-6 58.246 37.583 68.978 79.439 61.573 81.77 106.37 113.16 65 80 65 80 109 109 1 1 1 1 1 1 27113 18919 2485 18698 29036 37508 37508 1 VDVDIPDVNIEGPDAK Unmodified 1694.8363 0.8362953 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 2 67.414 67.414 3;4 2.3511E-07 21265 TMT1-3 102.78 20.07 192 233.12 174.11 176.41 180.69 259.21 181 234 182 174 189 248 2 2 2 2 2 2 77896 18920 1632 18699 29037;29038 37509;37510 37510 2 VDVDVPDVNIEGPDAK Unmodified 1680.8206 0.82064524 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3.67 0.471 1 2 64.216 64.216 2;3;4 1.8822E-19 19819 TMT1-3 124.42 92.986 84.86 124.15 59.529 65.64 98.737 113.38 80 123 65 65 101 109 2 2 2 2 2 2 54757 18921 1632 18700 29039;29040;29041 37511;37512;37513 37513 3 VDVECPDVNIEGPEGK Unmodified 1755.7985 0.79852959 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 2.5 0.5 1 1 57.892 57.892 3 5.5626E-07 18054 TMT1-1 100.41 87.469 68.578 125.81 89.557 95.558 98.152 120.86 65 124 94 94 102 116 2 2 2 2 2 2 22914 18922 1632 18701 29042;29043 37514;37515 37514 2 VDVEGPDVNIEGPEGK Unmodified 1652.7893 0.78934511 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 3 0 1 57.697 57.697 3 9.2131E-09 18286 TMT1-2 110.38 101.59 176.74 271.27 181.3 135.29 252.03 216.67 167 269 189 138 254 210 2 2 2 2 2 2 25019 18923 1632 18702 29044 37516;37517 37517 2 VDVEVPDVSLEGPEGK Unmodified 1667.8254 0.82539626 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 0 3.67 0.471 1 2 66.37 66.37 2;3;4 3.7329E-05 20717 TMT1-3 79.347 58.684 345.18 599.1 449.36 360.96 479.32 515.06 327 592 465 363 491 496 4 4 4 4 4 4 96609 18924 1632 18703 29045;29046;29047 37518;37519;37520;37521 37520 4 VDVFREDLCTK Unmodified 1380.6708 0.6707503 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 1 5 0 1 54.727 54.727 3 5.4211E-06 15856 TMT1-4 122.34 87.12 603.9 942.81 676.72 667.33 729.46 892.75 571 935 708 660 756 857 1 1 1 1 1 1 74370 18925 1603 18704 29048 37522 37522 1 VDVGKDQEFTVK Unmodified 1363.6983 0.69834526 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5.5 0.5 1 1 50.225 50.225 3 1.5457E-08 14065 TMT1-4 131.26 118.43 10743 13241 12792 9605.4 11995 14593 10145 13326 13002 9692 12368 14011 4 4 4 4 4 4 915220 18926 831 18705 29049;29050 37523;37524;37525;37526 37523 4 VDVSAPDVEAHGPEWNLK Unmodified 1961.9483 0.94830537 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 58.854 58.854 3 4.2087E-14 17469 TMT1-4 118.53 101.04 107.64 191.47 141.48 75.91 164.73 188.25 102 189 145 80 167 181 1 1 1 1 1 1 24476 18927 1632 18706 29051 37527 37527 1 VDVTEQPGLSGR Unmodified 1256.6361 0.63607935 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 44.33 44.33 2 7.1522E-25 13040 TMT1-2 192.95 146.56 168.75 300.65 237.9 210.73 245.63 302.13 160 297 246 210 254 290 2 2 2 2 2 2 44469 18928 2638 18707 29052;29053 37528;37529 37528 2 VDVYGYVVK Unmodified 1040.5542 0.5542472 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 7 0 1 61.453 61.453 2 0.0016023 18050 TMT1-6 80.239 41.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18929 570 18708 29054 37530 37530 1 VDWLTEK Unmodified 889.45453 0.45453316 1358;1765;1059 P60842;P60842-2;P38919;Q14240;Q14240-2 EIF4A1;EIF4A3;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 6 0 1 61.086 61.086 2 0.021743 18488 TMT1-5 96.253 47.749 152.99 270.32 206.72 103.1 197.77 134 145 267 211 109 198 131 1 1 1 1 1 1 17846 18930 1358;1059;1765 18709 29055 37531 37531 1 VDYEQIK Unmodified 893.44945 0.44944778 1170 P49137 MAPKAPK2 MAP kinase-activated protein kinase 2 yes yes 0 0 0 0 0 4 0 1 47.067 47.067 2 0.010017 13103 TMT1-3 109.86 37.724 84.775 92.619 100.51 86.849 119.73 143.69 80 94 102 87 123 138 1 1 1 1 1 1 10030 18931 1170 18710 29056 37532 37532 1 VDYFIASK Unmodified 941.48583 0.48583328 2464 Q99442 SEC62 Translocation protein SEC62 yes yes 0 0 0 0 0 7.5 0.5 1 1 60.403 60.403 2 0.020044 17714 TMT1-7 88.948 65.594 176.64 239.67 225.93 220.47 230.54 271.65 167 240 232 218 239 261 2 2 2 2 2 2 18963 18932 2464 18711 29057;29058 37533;37534 37534 2 VDYKADEWLMK Unmodified 1396.6697 0.66968766 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 6.33 0.471 2 1 61.259 61.259 3;4 0.00027804 17993 TMT1-6 101.6 71.537 858.02 1131.2 727.52 653.05 630.18 1396.6 809 1129 766 648 677 1327 3 3 3 3 3 3 88961 18933 1019;1020 18712 29059;29060;29061 37535;37536;37537 37537 3 VDYLSSLGK Unmodified 980.51786 0.51786169 1767 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 0 7 0 1 62.938 62.938 3 0.0015753 18632 TMT1-6 63.216 35.474 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18934 1767 18713 29062 37538 37538 1 VDYYEVLGVQR Acetyl (Protein N-term) 1381.6878 0.68778057 257 O75190-2;O75190-3;O75190 DNAJB6 DnaJ homolog subfamily B member 6 yes no 0 1 0 0 0 3 0 1 75.892 75.892 2 0.0047657 25380 TMT1-2 55.567 36.589 7.511 0 0 16.124 14.414 15.579 7 0 0 15 15 15 1 0 0 1 1 1 1820.1 18935 257 18714 29063 37539 37539 1 VEAFQTTISK Unmodified 1122.5921 0.59208927 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 0 7 0 1 54.167 54.167 2 0.010829 15170 TMT1-6 83.081 75.269 99.955 100.67 67.054 120.96 97.24 113.42 94 102 73 116 102 109 1 1 1 1 1 1 12302 18936 2907 18715 29064 37540 37540 1 VEALGQFVMK Unmodified 1120.5951 0.59506616 106 O14775-3;O14775-2;O14775 GNB5 Guanine nucleotide-binding protein subunit beta-5 yes no 0 0 0 0 0 8 0 1 67.428 67.428 2 0.00047747 20472 TMT1-7 85.355 53.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18937 106 18716 29065 37541 37541 1 VEAQLQELQVK Unmodified 1283.7085 0.70851601 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 0 4.25 1.92 1 2 1 58.606 58.606 2;3 2.4582E-12 17298 TMT1-4 171.74 132.96 869.69 1238.5 1200.1 901.1 1344.4 1223.8 823 1238 1219 913 1365 1184 5 5 5 5 5 5 262940 18938 1019 18717 29066;29067;29068;29069 37542;37543;37544;37545;37546 37544 5 VEAQVYILSK Unmodified 1148.6441 0.64412484 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 7 0 1 60.71 60.71 3 0.0055126 17721 TMT1-6 71.555 49.357 230.81 286.21 278.94 200.5 252.59 234.77 218 288 283 203 258 227 1 1 1 1 1 1 24695 18939 1180 18718 29070 37547 37547 1 VEDFGNAWK Unmodified 1064.4927 0.49270958 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6 0 1 58.629 58.629 2 2.5869E-06 17507 TMT1-5 164.96 104.2 291.12 477.35 439.83 283.62 379.25 516.85 276 474 446 290 392 495 2 2 2 2 2 2 42547 18940 471 18719 29071 37548;37549 37548 2 VEDMAELTCLNEASVLHNLK Unmodified 2285.1032 0.1031678 1019;1020 P35579;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 6 0.894 2 1 2 72.231 72.231 3;4 8.4813E-24 22751 TMT1-4 137.05 113.72 422.69 627.1 562.34 401.62 516.48 566.23 400 625 573 407 530 545 6 6 6 6 6 6 223970 18941 1019;1020 18720 29072;29073;29074;29075;29076 37550;37551;37552;37553;37554;37555 37550 6 VEDMAELTCLNEASVLHNLKER Unmodified 2570.2469 0.24687193 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 6 0 1 67.421 67.421 4 3.5081E-06 21041 TMT1-5 72.568 52.656 61.375 87.251 70.497 66.094 39.842 91.605 58 87 73 65 44 87 1 1 1 1 1 1 11267 18942 1019 18721 29077 37556 37556 1 VEDQVNVR Unmodified 957.48796 0.48795855 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 2 0 1 35.876 35.876 2 0.010262 9174 TMT1-1 99.442 56.223 23.045 51.868 50.363 35.708 33.926 60.86 22 51 51 36 36 58 1 1 1 1 1 1 23116 18943 651 18722 29078 37557 37557 1 VEDVEALDR Unmodified 1044.5088 0.50875357 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 2 0 1 48.191 48.191 2 0.0020613 14150 TMT1-1 107.15 57.829 276.82 324.79 267.31 210.06 246.46 278.66 261 327 275 211 254 268 2 2 2 2 2 2 57798 18944 648 18723 29079 37558;37559 37558 2 VEDVEALDRK Unmodified 1172.6037 0.60371659 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 1 3 0 1 46.648 46.648 3 0.0014414 13965 TMT1-2 92.445 61.526 107.81 175.76 125.77 109.67 104.83 120.66 102 174 131 109 109 116 1 1 1 1 1 1 12737 18945 648 18724 29080 37560 37560 1 VEDVSAVEIVGGATR Unmodified 1500.7784 0.77838649 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 3 0 1 59.322 59.322 3 1.2213E-10 18926 TMT1-2 121.13 110.49 30.676 35.499 44.045 28.688 20.396 37.794 29 36 44 29 22 36 1 1 1 1 1 1 5986 18946 2303 18725 29081 37561 37561 1 VEEDVASDLVMK Unmodified 1333.6435 0.64353249 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 2 0 1 64.111 64.111 3 0.0054345 20469 TMT1-1 64.55 35.203 30.849 28.426 20.958 22.112 36.404 37.337 29 29 22 22 37 36 1 1 1 1 1 1 2752.6 18947 2789 18726 29082 37562 37562 1 VEEEEER Unmodified 918.39306 0.39305511 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 0 1.5 0.5 1 1 26.042 26.042 2 0.0076347 5414 TMT 1-phospho 125.5 16.58 132.29 181.06 155.51 112.18 167.68 114.61 125 181 159 114 169 112 2 2 2 2 2 2 36272 18948 1019;1020 18727 29083;29084 37563;37564 37563 2 VEEEIQTLSQVLAAK Unmodified 1656.8934 0.89341625 1321 P55327-8;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3 TPD52 Tumor protein D52 yes no 0 0 0 0 0 6 0 1 84.74 84.74 3 9.6294E-08 27749 TMT1-5 108.71 69.707 77.37 118.25 60.947 66.905 85.083 82.852 73 117 66 66 87 80 2 2 2 2 2 2 7168.2 18949 1321 18728 29085 37565;37566 37565 2 VEEEIVTLR Unmodified 1086.5921 0.59208927 172 O43399;O43399-5;O43399-7;O43399-2;O43399-4;O43399-3;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 2.5 0.5 1 1 54.89 54.89 2 0.0028111 17061 TMT1-2 74.173 34.849 77.162 92.849 117.47 71.053 92.222 82.648 73 94 117 73 94 80 2 2 2 2 2 2 16832 18950 172 18729 29086;29087 37567;37568;37569 37569 3 VEEFLYEK Unmodified 1055.5175 0.51752734 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 0 5 0 1 62.393 62.393 3 0.006766 18855 TMT1-4 51.066 28.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18951 2723 18730 29088 37570 37570 1 VEEIICGLIK Unmodified 1172.6475 0.64749566 2613 Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 0 7 0 1 77.865 77.865 2 0.00061068 24478 TMT1-6 112.11 63.047 46.623 50.175 56.522 67.076 31.934 76.907 44 51 58 65 36 73 1 1 1 1 1 1 5055.1 18952 2613 18731 29089 37571 37571 1 VEELDRK Unmodified 887.47125 0.47124585 2944 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 1 4 0 1 36.748 36.748 3 0.002353 9033 TMT1-3 72.789 19.235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18953 2944 18732 29090 37572 37572 1 VEELEEK Unmodified 874.42838 0.42837799 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 2 0 1 46.57 46.57 2 0.0088226 13555 TMT1-1 114.93 8.985 130.66 151.36 93.198 166.71 139.1 143.14 123 152 102 160 145 138 1 1 1 1 1 1 13314 18954 356 18733 29091 37573 37573 1 VEEQEPELTSTPNFVVEVIK Unmodified 2286.1631 0.16310875 1608 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 75.877 75.877 3 2.5979E-13 24385 TMT1-3 105.32 89.883 46.258 88.015 85.76 64.208 91.767 105.05 44 87 87 65 94 101 2 2 2 2 2 2 29894 18955 1608 18734 29092 37574;37575 37574 2 VEETCGCR Unmodified 1009.3957 0.39571442 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 2 0 1 26.061 26.061 2 0.028022 5491 TMT1-1 83.206 70.653 38.226 27.54 44.17 35.757 50.948 21.998 36 29 44 36 51 22 1 1 1 1 1 1 3113.2 18956 471 18735 29093 37576 37576 1 VEEVLNDWK Unmodified 1130.5608 0.56078914 1819 Q15042-3;Q15042 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes no 0 0 0 0 0 5 0 1 65.958 65.958 2 0.0058463 20301 TMT1-4 96.342 77.727 61.283 86.997 86.062 57.094 62.243 90.966 58 87 87 58 65 87 1 1 1 1 1 1 5050.5 18957 1819 18736 29094 37577 37577 1 VEFATLQEALAHALTEK Unmodified 1869.9836 0.98362824 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 7 0 1 82.47 82.47 3 0.00081007 26263 TMT1-6 64.83 44.167 61.4 72.21 79.047 64.441 100.65 89.87 58 73 80 65 102 87 1 1 1 1 1 1 7828.7 18958 1805 18737 29095 37578 37578 1 VEFEELCADLFER Unmodified 1655.7501 0.75012283 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 4 0 1 78.652 78.652 2 8.9115E-11 25499 TMT1-3 143 92.018 23.026 66.926 40.783 60.465 26.521 30.157 22 65 44 58 29 29 1 1 1 1 1 1 8233.5 18959 3017 18738 29096 37579 37579 1 VEFMDDTSR Unmodified 1098.4652 0.4651742 1452 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 0 0 3 0 1 49.128 49.128 2 0.00061533 14905 TMT1-2 132.84 109.95 99.766 131.44 72.815 120.23 117.69 158.67 94 131 80 116 123 152 1 1 1 1 1 1 17617 18960 1452 18739 29097 37580 37580 1 VEFNVNYTQDLDK Unmodified 1583.7468 0.74675201 2602 Q9GZT8;Q9GZT8-2;Q9GZT8-3 NIF3L1 NIF3-like protein 1 yes no 0 0 0 0 0 5 0 1 63.281 63.281 2 0.0064456 19214 TMT1-4 74.392 50.011 30.804 28.301 28.566 21.516 44.017 29.658 29 29 29 22 44 29 1 1 1 1 1 1 4821.6 18961 2602 18740 29098 37581 37581 1 VEGDLKGPEADIK Unmodified 1369.7089 0.70890994 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 4 0 1 48.366 48.366 3 0.015732 13623 TMT1-3 57.53 31.94 145.62 323.02 138.96 121.02 273.09 201.14 138 315 152 123 273 196 1 1 1 1 1 1 15611 18962 1632 18741 29099 37582 37582 1 VEGDLKGPEIDIK Unmodified 1411.7559 0.75586013 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 54.962 54.962 3 5.7513E-05 15936 TMT1-4 101.2 52.578 289.45 204.32 230.76 219.91 245.33 207.27 272 214 235 218 251 201 1 1 1 1 1 1 23792 18963 1632 18742 29100 37583 37583 1 VEGDLKGPEIDVK Unmodified 1397.7402 0.74021007 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 4 0 1 52.325 52.325 3 0.00078986 15262 TMT1-3 79.337 11.169 122.26 269.19 143.23 100.3 140.83 181.47 116 263 152 102 145 174 1 1 1 1 1 1 45500 18964 1632 18743 29101 37584 37584 1 VEGDLKGPEVDLK Unmodified 1397.7402 0.74021007 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 4.75 0.433 1 3 52.636 52.636 3;4 6.4301E-11 15157 TMT1-3 138.77 0 1111.8 2205 1348 1086.7 1641.1 1656.6 1054 2164 1418 1096 1671 1598 5 5 5 5 5 5 171020 18965 1632 18744 29102;29103;29104;29105 37585;37586;37587;37588;37589 37585 5 VEGFPTIYFAPSGDK Unmodified 1626.793 0.79297392 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 7 0 1 72.513 72.513 3 0.00051101 22384 TMT1-6 74.296 46.961 53.415 125.37 113.53 93.975 106.36 97.169 51 123 116 94 109 94 1 1 1 1 1 1 19607 18966 686 18745 29106 37590 37590 1 VEGFPTIYFAPSGDKK Unmodified 1754.8879 0.88793694 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 8 0 1 64.678 64.678 3 0.016635 19433 TMT1-7 50.827 33.338 37.863 96.685 46.556 59.13 79.174 52.107 36 94 51 58 80 51 1 1 1 1 1 1 11843 18967 686 18746 29107 37591 37591 1 VEGGTPLFTLR Unmodified 1188.6503 0.65027285 1046 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 0 7 0 1 60.704 60.704 2 2.0486E-05 17763 TMT1-6 119.62 74.656 191.47 283.44 221.06 172.06 263.25 236.6 181 282 228 174 267 229 1 1 1 1 1 1 37381 18968 1046 18747 29108 37592 37592 1 VEGHVFPEFK Unmodified 1187.5975 0.597509 116 O14964-2;O14964 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 0 6 0 1 52.036 52.036 3 0.0097367 14944 TMT1-5 64.439 49.173 160.77 213.35 209.77 159.09 174.57 216.75 152 214 213 160 181 208 1 1 1 1 1 1 18864 18969 116 18748 29109 37593 37593 1 VEGTEPTTAFNLFVGNLNFNK Unmodified 2311.1485 0.14846174 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 8.5 0.5 1 1 84.473 84.473 3 6.807E-14 27139 TMT1-7 108.96 92.471 84.66 132.23 86.32 84.891 94.454 120.96 80 131 91 84 98 116 3 3 3 3 3 3 53409 18970 786 18749 29110;29111 37594;37595;37596 37595 3 VEHAVAEGAK Unmodified 1009.5193 0.51925868 1887 Q16512-2;Q16512;Q16512-3 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 0 0 4 0 1 31.791 31.791 3 0.0023769 7037 TMT1-3 81.017 45.073 77.379 117.2 60.302 58.503 68.942 137.68 73 116 65 58 73 131 1 1 1 1 1 1 14770 18971 1887 18750 29112 37597 37597 1 VEHGSVALPAIMR Unmodified 1378.7391 0.73910463 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7.5 1.12 1 1 1 1 49.497 49.497 3 1.6342E-14 11550 TMT1-8 147.24 98.821 1099.5 1393.9 1225.7 1087 1084 1672.5 1038 1399 1260 1080 1139 1598 6 6 6 6 6 6 147030 18972 3010 18751 29113;29114;29115;29116 37598;37599;37600;37601;37602;37603 37603 6 VEHSDLSFSK Unmodified 1147.551 0.55095274 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 0 4.8 2.04 1 2 1 1 43.314 43.314 2;3 7.6531E-29 11292 TMT1-4 211.27 111.46 1078.8 1456.5 1572.4 1092.1 1342.4 1481.8 1021 1462 1584 1108 1380 1426 5 5 5 5 5 5 484570 18973 1399 18752 29117;29118;29119;29120;29121 37604;37605;37606;37607;37608 37606 5 VEHTPDGVK Unmodified 980.49271 0.49270958 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 4 0 1 31.768 31.768 3 0.0064964 7093 TMT1-3 72.607 48.452 339.03 301.03 292.1 285.64 333.32 359.32 319 309 300 283 343 346 2 2 2 2 2 2 61255 18974 648 18753 29122 37609;37610 37610 2 VEHWGLDEPLLK Unmodified 1434.7507 0.75071518 427 P01903;P01906 HLA-DRA;HLA-DQA2 HLA class II histocompatibility antigen, DR alpha chain;HLA class II histocompatibility antigen, DQ alpha 2 chain yes no 0 0 0 0 0 5.5 0.5 1 1 61.071 61.071 3 4.2899E-09 18389 TMT1-4 117.86 89.151 107.57 200.98 145.69 138.68 184.59 196.21 102 198 152 138 189 189 1 1 1 1 1 1 22231 18975 427 18754 29123;29124 37611;37612 37611 2 VEHWGLDQPLLK Unmodified 1433.7667 0.76669959 801 P20036 HLA-DPA1 HLA class II histocompatibility antigen, DP alpha 1 chain yes yes 0 0 0 0 0 7 0 1 59.694 59.694 3 0.0066731 17337 TMT1-6 63.091 34.327 169.43 243.17 172.87 168.88 177.91 228.38 160 242 181 167 185 219 1 1 1 1 1 1 16405 18976 801 18755 29125 37613 37613 1 VEIAGPGFINVHLR Unmodified 1520.8463 0.8463469 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 60.967 60.967 3 7.8195E-08 17885 TMT1-7 113.52 87.822 77.744 79.357 31.123 60.071 78.068 83.052 73 80 36 58 80 80 1 1 1 1 1 1 15867 18977 1296 18756 29126 37614 37614 1 VEIATLTR Unmodified 901.52328 0.52328142 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 5 0 1 49.457 49.457 2 0.018069 13793 TMT1-4 90.37 50.167 84.152 208.53 106.99 125.41 141 143.08 80 203 116 123 145 138 1 1 1 1 1 1 13715 18978 893 18757 29127 37615 37615 1 VEILANDQGNR Unmodified 1227.6208 0.62076364 754 P17066;P48741 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 0 0 0 0 0 3.2 1.33 1 2 1 1 43.687 43.687 2;3 2.9973E-17 12750 TMT1-2 190.57 0 2179.6 2898.5 2717 1943 2857.7 3185.7 2060 2905 2762 1975 2922 3065 9 9 9 9 9 9 722340 18979 754 18758 29128;29129;29130;29131;29132 37616;37617;37618;37619;37620;37621;37622;37623;37624 37620 9 VEILCEHPR Unmodified 1151.5757 0.5757277 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 3.33 1.7 1 1 1 40.74 40.74 3 2.6544E-05 10543 TMT1-3 148.94 93.395 460.81 658.65 621.52 508.01 600.06 548.92 436 658 634 509 614 531 6 6 6 6 6 6 181090 18980 1934 18759 29133;29134;29135 37625;37626;37627;37628;37629;37630 37627 6 VEILTALR Unmodified 913.55967 0.55966693 2290 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 0 7.5 0.5 1 1 62.054 62.054 2 0.0058132 18322 TMT1-7 113.7 64.373 169.26 248.1 197.15 151.76 197.62 225.68 160 247 203 153 203 217 2 2 2 2 2 2 42999 18981 2290 18760 29136;29137 37631;37632 37632 2 VEITYTPSDGTQK Unmodified 1437.6987 0.69873919 307 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 0 4.5 0.5 1 1 50.328 50.328 3 6.669E-11 14401 TMT1-3 132.79 105.68 215.03 305.44 210.32 235.13 314.46 336.41 203 304 222 232 322 324 2 2 2 2 2 2 38997 18982 307 18761 29138;29139 37633;37634 37633 2 VEKDGLILTSR Unmodified 1229.698 0.69795133 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 6 0 1 47.796 47.796 3 0.0097566 13288 TMT1-5 66.708 36.021 185.86 302.56 245.79 198.94 266.23 327.13 176 300 253 200 274 314 1 1 1 1 1 1 14585 18983 2468 18762 29140 37635 37635 1 VEKFDLVPVPTNLYGDFFTGDAYVILK Unmodified 3059.5896 0.58957666 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 1 8.5 0.5 1 1 91.827 91.827 4 4.3456E-09 28045 TMT1-8 71.149 45.742 203.71 216.95 203.07 129.68 145.11 261.29 192 220 206 131 153 249 5 5 5 4 5 5 45231 + 18984 506 18763 29141;29142 37636;37637;37638;37639;37640 37639 5 VEKIPGGIIEDSCVLR Unmodified 1783.9502 0.95021962 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 1 6 0 1 59.606 59.606 3 7.7041E-06 17951 TMT1-5 90.89 70.794 99.819 107.84 83.898 73.223 83.217 128.74 94 109 87 73 87 123 1 1 1 1 1 1 11219 18985 1178 18764 29143 37641 37641 1 VELDNMPLR Unmodified 1085.5539 0.55392962 1837 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 0 4 0 1 55.579 55.579 2 0.0064016 16473 TMT1-3 65.156 42.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18986 1837 18765 29144 37642 37642 1 VELDTHGCGLR Unmodified 1255.5979 0.5979197 2625 Q9H270 VPS11 Vacuolar protein sorting-associated protein 11 homolog yes yes 0 0 0 0 0 4 0 1 39.498 39.498 3 0.0041432 10129 TMT1-3 71.085 44.642 77.296 116.97 74.485 104.77 121.29 74.357 73 116 80 102 123 73 1 1 1 1 1 1 7477.3 18987 2625 18766 29145 37643 37643 1 VELEDWNGR Unmodified 1116.52 0.51998696 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 3 1.41 1 1 1 1 1 52.856 52.856 2 6.7362E-20 16408 TMT1-2 195.06 112.76 2996.5 3790 2803.5 2619 3075.9 3969.4 2826 3796 2923 2602 3186 3806 7 7 7 7 7 7 752370 18988 439 18767 29146;29147;29148;29149;29150 37644;37645;37646;37647;37648;37649;37650 37648 7 VELFHYQDGAFHTEYNR Unmodified 2124.9654 0.96535241 1780 Q14554;Q14554-2 PDIA5 Protein disulfide-isomerase A5 yes no 0 0 0 0 0 5 0 1 52.944 52.944 4 0.0011669 15174 TMT1-4 61.256 55.938 215.21 241.19 234.19 198.61 204.61 263.86 203 244 239 198 213 253 1 1 1 1 1 1 16739 18989 1780 18768 29151 37651 37651 1 VELGEKPLR Unmodified 1039.6026 0.60259438 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 1 6 0 1 43.473 43.473 3 0.00022407 11513 TMT1-5 132.01 73.03 345.37 544.6 462.55 429.92 374.42 492.47 327 541 477 425 393 472 2 2 2 2 2 2 63394 18990 2525 18769 29152 37652;37653 37652 2 VELIHGK Unmodified 794.46504 0.46503826 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 6 0 1 40.85 40.85 3 0.017838 10547 TMT1-5 70.268 32.03 99.781 76.437 116.91 78.754 91.355 97.597 94 80 116 80 94 94 1 1 1 1 1 1 9667.7 18991 1744 18770 29153 37654 37654 1 VELLSASSLLPLDSNGSSDPFVQLTLEPR Unmodified 3083.6027 0.60266054 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 7 0 1 98.31 98.31 4 0.00025694 31926 TMT1-6 47.507 33.046 0 7.1887 15.511 6.4668 13.811 15.596 0 7 15 7 14 15 0 1 1 1 1 1 3028.8 18992 2066 18771 29154 37655 37655 1 VELNALMTDETISNVPILILGNK Oxidation (M) 2512.3458 0.34584092 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 1 0 0 7 0 1 87.662 87.662 4 0.0004551 28206 TMT1-6 53.059 39.632 30.672 35.488 44.742 13.066 35.223 53.361 29 36 44 15 36 51 1 1 1 1 1 1 4022.6 18993 2721 18772 29155 37656 37656 313 1 VELNALMTDETISNVPILILGNK Unmodified 2496.3509 0.35092629 2721 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 0 7.33 0.471 2 1 93.36 93.36 3;4 2.17E-13 30277 TMT1-7 101.48 87.746 147.47 174.01 134.37 108.68 188.35 126.81 139 175 139 110 189 124 4 4 4 4 4 4 28547 18994 2721 18772 29156;29157;29158 37657;37658;37659;37660 37659 4 VELQELNDR Unmodified 1114.5619 0.56185177 575 P08670;P17661 VIM;DES Vimentin;Desmin yes no 0 0 0 0 0 2 0 2 48.418 48.418 2;3 0.00032856 14358 TMT1-1 140.83 77.548 122.71 213.24 115.17 101.16 183.91 235.67 116 210 123 102 188 226 2 2 2 2 2 2 250950 18995 575 18773 29159;29160 37661;37662 37662 2 VELSDVQNPAISITENVLHFK Unmodified 2352.2325 0.23252572 2808 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 0 0 6.5 0.5 1 1 80.838 80.838 3;4 1.0141E-07 26301 TMT1-5 88.396 53.784 84.989 85.66 70.449 66.644 68.861 129.15 80 87 73 66 73 123 2 2 2 2 2 2 10921 18996 2808 18774 29161;29162 37663;37664 37663 2 VELVPPTPAEIPR Unmodified 1416.7977 0.79766537 319 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 0 5 0 1 61.993 61.993 3 0.00046363 18751 TMT1-4 79.089 57.216 122.91 183.6 105.45 189.22 182 203.74 116 182 116 182 189 196 2 2 2 2 2 2 33989 18997 319 18775 29163 37665;37666 37666 2 VELVQLK Unmodified 827.51165 0.5116541 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 7 0 1 57.723 57.723 2 0.0051144 16557 TMT1-6 135.16 27.074 99.586 99.639 130.07 116.52 133.82 150.75 94 102 131 116 138 145 1 1 1 1 1 1 14626 18998 1742 18776 29164 37667 37667 1 VEMLDNLLDIEVAYSLLR Unmodified 2105.1078 0.10784248 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 7 0 1 102.43 102.43 3 0.025653 33206 TMT1-6 39.387 21.841 4.1896 6.9766 11.301 3.6277 3.7648 7.3546 4 7 11 4 4 7 1 1 1 1 1 1 606.91 18999 606 18777 29165 37668 37668 1 VENACTK Unmodified 820.3749 0.37490263 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 5 0 1 31.245 31.245 2 0.033849 6535 TMT1-4 88.948 31.389 154.61 72.995 101.66 79.476 101.27 51.476 145 80 102 80 102 51 1 1 1 1 1 1 14943 19000 776 18778 29166 37669 37669 1 VENFIHK Unmodified 885.47085 0.47085192 1536 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 0 0 0 7 0 1 46.759 46.759 3 0.026323 12234 TMT1-6 62.659 26.778 84.336 146.44 128.73 85.283 113.54 112.95 80 145 131 87 116 109 1 1 1 1 1 1 8902.3 19001 1536 18779 29167 37670 37670 1 VENPNSLLEQSVALLNLWVIR Unmodified 2406.3271 0.3270948 736 P16157-2;P16157-8;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-15;P16157-11;P16157-10;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-14 ANK1 Ankyrin-1 yes no 0 0 0 0 0 9 0 1 106.41 106.41 3 3.3815E-06 33258 TMT1-8 68.134 52.941 0 7.3341 6.8112 7.2451 0 7.462 0 7 7 7 0 7 0 1 1 1 0 1 1536.2 19002 736 18780 29168 37671 37671 1 VENQENVSNLVIEDTELK Unmodified 2072.0273 0.027343548 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 0 2.67 0.745 3 2 1 67.348 67.348 3;4 3.6628E-26 21806 TMT1-2 154.39 138.4 973.83 1258.5 1174.2 958.22 1353 1232.1 920 1263 1199 964 1376 1192 10 10 10 10 10 10 439880 19003 1555;1556 18781 29169;29170;29171;29172;29173;29174 37672;37673;37674;37675;37676;37677;37678;37679;37680;37681 37678 10 VENSWGEDHGHK Unmodified 1393.6011 0.60109083 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 4 0 1 31.78 31.78 4 0.017459 7034 TMT1-3 51.218 29.345 130.47 159.45 119.08 109.09 156.68 165.02 123 160 124 109 160 159 2 2 2 2 2 2 9761.9 19004 1739 18782 29175 37682;37683 37682 2 VEPADASGTEK Unmodified 1102.5142 0.51423288 1171 P49189;P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 2.5 0.5 1 1 37.071 37.071 2;3 1.5696E-06 9776 TMT1-1 138.36 72.103 46.593 65.204 48.735 51.623 64.62 29.07 44 65 51 51 65 29 1 1 1 1 1 1 8327.7 19005 1171 18783 29176;29177 37684;37685 37684 2 VEPFTSLHVQLQSGR Unmodified 1696.8897 0.88966827 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8 0 1 55.654 55.654 3 6.2171E-08 15811 TMT1-7 111.64 90.803 30.584 66.543 33.183 36.428 50.111 45.474 29 65 36 36 51 44 1 1 1 1 1 1 9983.9 19006 2061 18784 29178 37686 37686 1 VEPGLFEWTK Unmodified 1204.6128 0.61282471 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 7 0 2 69.702 69.702 2;3 7.5147E-05 21225 TMT1-6 105.98 0 61.03 102.48 115.56 78.539 107.07 97.149 58 102 116 80 109 94 1 1 1 1 1 1 16660 19007 2263 18785 29179;29180 37687;37688 37688 2 VEPGLGADNSVVR Unmodified 1311.6783 0.67827852 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.67 1.97 1 1 1 1 1 1 46.163 46.163 2 1.1791E-72 12616 TMT1-3 244.64 166.13 2898.8 3447.3 3650.2 2859.5 3533 4012.9 2738 3481 3696 2876 3635 3859 9 9 9 9 9 9 1333200 19008 831 18786 29181;29182;29183;29184;29185;29186 37689;37690;37691;37692;37693;37694;37695;37696;37697 37694 9 VEPPKEEQK Unmodified 1082.5608 0.56078914 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 1 4 0 1 34.846 34.846 3 0.0035828 8240 TMT1-3 88.496 39.195 138.33 236.74 174.19 151.63 219.35 171.76 131 234 181 152 222 167 1 1 1 1 1 1 24025 19009 1009 18787 29187 37698 37698 1 VEPSHDASK Unmodified 968.45632 0.45632407 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.5 1.12 1 1 1 1 26.852 26.852 3 0.0029491 5976 TMT1-2 81.771 42.623 658.31 333.08 524.3 410.34 580.36 339.48 618 363 523 414 584 334 7 7 7 7 7 7 79105 19010 831 18788 29188;29189;29190;29191 37699;37700;37701;37702;37703;37704;37705 37701 7 VEQEEPISPGSTLPEVK Unmodified 1837.9309 0.93092397 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 4 0 1 57.94 57.94 3 0.0066324 17422 TMT1-3 51.566 41.37 54.151 64.821 41.144 51.667 86.334 66.826 51 65 44 51 87 65 1 1 1 1 1 1 7193.8 19011 2305 18789 29192 37706 37706 1 VEQHVELYQK Unmodified 1271.651 0.65100113 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 5 0 1 41.698 41.698 3 0.00074774 10760 TMT1-4 94.82 66.643 129.89 224.78 159.78 152.09 240.42 227.66 123 222 167 152 244 220 1 1 1 1 1 1 19016 19012 415 18790 29193 37707 37707 1 VEQHVVDGK Unmodified 1009.5193 0.51925868 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 4 0 1 34.035 34.035 3 0.007914 7919 TMT1-3 69.672 55.902 200.76 196.33 175.54 168.6 184.46 220.73 189 200 181 167 191 212 1 1 1 1 1 1 26716 19013 3001 18791 29194 37708 37708 1 VEQIAAIAQELNELDYYDSHNVNTR Unmodified 2904.389 0.38897937 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 5 0 1 81.007 81.007 4 8.6564E-09 26194 TMT1-4 78.707 71.513 61.418 79.817 69.507 74.042 85.305 66.856 58 80 72 73 87 65 2 2 2 2 2 2 23932 19014 195 18792 29195 37709;37710 37710 2 VEQIAAIAQELNELDYYDSPSVNAR Unmodified 2807.3614 0.36136764 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 5.17 1.07 2 2 1 1 89.441 89.441 3;4 3.3975E-19 29389 TMT1-4 106.99 99.277 200.3 231.18 229.9 198.17 183.16 158.07 189 234 234 197 189 153 7 8 7 7 7 6 252300 19015 672 18793 29196;29197;29198;29199;29200;29201 37711;37712;37713;37714;37715;37716;37717;37718 37714 8 VEQLGAEGNVEESQK Unmodified 1615.7689 0.76894402 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 0 2.5 0.5 1 1 46.291 46.291 3 3.3875E-15 13531 TMT1-1 137.17 119.66 107 161.45 94.163 134.13 124.89 143.54 101 160 102 130 130 138 2 2 2 2 2 2 26738 19016 2414 18794 29202;29203 37719;37720 37719 2 VEQVLSLEPQHELK Unmodified 1647.8832 0.88318591 345 O95292;O95292-2 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 0 0 0 0 0 5 0 2 57.69 57.69 3;4 2.1131E-10 16971 TMT1-4 122.08 84.924 293.78 362.96 270.79 272.89 264.98 355.94 277 364 283 269 277 341 3 3 3 3 3 3 38711 19017 345 18795 29204;29205 37721;37722;37723 37721 3 VESDLKGPEVDIEGPEGK Unmodified 1896.9317 0.93165225 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 4 0 1 55.313 55.313 3 7.5411E-10 16386 TMT1-3 104.89 66.006 153.33 180.59 226.6 117.64 175.34 249.77 145 183 225 123 181 239 1 1 1 1 1 1 22007 19018 1632 18796 29206 37724 37724 1 VESEIKVPDVELK Unmodified 1483.8134 0.81337501 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 5 0 1 59.434 59.434 3 0.00038543 17670 TMT1-4 87.647 72.255 183.63 426.59 154.57 161.02 246.9 240.27 174 415 174 160 251 232 1 1 1 1 1 1 25326 19019 1632 18797 29207 37725 37725 1 VESLEQEAANER Unmodified 1373.6423 0.64228694 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 2 0 2 46.707 46.707 2;3 3.4696E-09 13570 TMT1-1 142.97 117.65 61.299 94.596 76.955 81.28 83.653 105.28 58 94 80 80 87 101 2 2 2 2 2 2 75909 19020 482 18798 29208;29209 37726;37727 37726 2 VESLQEEIAFLK Unmodified 1404.75 0.75004648 575 P08670 VIM Vimentin yes yes 0 0 0 0 0 5 0 1 75.483 75.483 2 5.4702E-10 23995 TMT1-4 155.48 45.093 30.596 43.91 50.413 44.447 34.037 45.933 29 44 51 44 36 44 1 1 1 1 1 1 6808.8 19021 575 18799 29210 37728 37728 1 VESTDVSDLLHQYR Unmodified 1660.8057 0.80566387 922 P28062-2;P28062 PSMB8 Proteasome subunit beta type-8 yes no 0 0 0 0 0 5 0.816 1 1 1 57.495 57.495 3 2.174E-24 17279 TMT1-3 179.83 159.56 130.53 127.25 135.47 124.65 149.15 150.31 123 130 138 124 153 145 2 2 2 2 2 2 77937 19022 922 18800 29211;29212;29213 37729;37730;37731;37732 37730 4 VESVDLLAFPAYLLGIDSGR Unmodified 2134.131 0.13102076 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 8 0 1 100.88 100.88 3 6.7369E-18 32939 TMT1-7 124.37 108.43 14.763 26.315 21.16 22.248 28.535 22.638 14 26 22 22 29 22 2 2 2 2 2 2 9591 19023 44 18801 29214 37733;37734 37734 2 VESVFETLVEDSAEEESTLTK Unmodified 2341.106 0.10604738 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 4 0 1 91.717 91.717 3 1.3846E-11 30388 TMT1-3 103.9 89.132 19.101 40.809 27.707 25.275 21.213 18.583 18 40 29 25 22 18 1 2 2 2 2 2 3070.3 19024 3017 18802 29215 37735;37736 37736 2 VETEEGIGYDFR Unmodified 1413.6412 0.64122431 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 2 0 1 54.999 54.999 2 2.2656E-16 16886 TMT1-1 147.19 119.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19025 2061 18803 29216 37737 37737 1 VETFSGVYK Unmodified 1028.5179 0.51786169 1412 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 0 6.5 0.5 1 1 53.01 53.01 2;3 0.0015488 15349 TMT1-5 117.89 45.342 237.92 418.4 235.01 303.44 381.36 398.46 225 412 254 297 391 384 2 2 2 2 2 2 37645 19026 1412 18804 29217;29218 37738;37739 37738 2 VETGVLKPGMVVTFAPVNVTTEVK Oxidation (M) 2530.3717 0.37166174 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 0 1 8 0 1 67.478 67.478 4 1.2053E-09 20549 TMT1-7 88.222 75.293 154.45 194.69 205.95 222.07 208.73 264.81 146 196 211 218 218 254 2 2 2 2 2 2 27963 19027 1490 18805 29219 37740;37741 37741 240 2 VETGVLKPGMVVTFAPVNVTTEVK Unmodified 2514.3767 0.37674711 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 1 8.5 0.5 1 1 71.489 71.489 3;4 3.3837E-31 20224 TMT1-8 126.45 105.44 513.76 698.18 525.39 372.15 515.02 861.56 485 697 542 378 537 822 3 3 3 3 3 3 229910 19028 1490 18805 29220;29221 37742;37743;37744 37744 3 VETNYDHWKPAPK Unmodified 1583.7732 0.77324153 1563 Q02083;Q02083-2 NAAA N-acylethanolamine-hydrolyzing acid amidase;N-acylethanolamine-hydrolyzing acid amidase subunit alpha;N-acylethanolamine-hydrolyzing acid amidase subunit beta yes no 0 0 0 0 1 7 0 1 44.32 44.32 4 7.9189E-05 11288 TMT1-6 96.591 70.874 153.92 172.51 134.42 84.525 135.8 135.77 145 174 138 87 138 131 1 1 1 1 1 1 10827 19029 1563 18806 29222 37745 37745 1 VETSEHFR Unmodified 1003.4723 0.47230849 1090 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 0 0 0 4.5 1.5 1 1 29.568 29.568 3 4.0303E-06 7152 TMT1-2 164.53 79.321 108.34 90.904 108.08 86.663 105.63 128.1 102 94 109 87 109 123 1 1 1 1 1 1 12404 19030 1090 18807 29223;29224 37746;37747 37746 2 VETTEDLVAK Unmodified 1103.571 0.57101948 1055 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 0 3.67 0.471 1 2 50.666 50.666 2;3 0.0016245 14468 TMT1-3 86.624 50.099 285.06 362.09 294.1 286.27 293.68 355.13 269 363 305 283 305 341 3 3 3 3 3 3 67660 19031 1055 18808 29225;29226;29227 37748;37749;37750 37749 3 VETVGQPDRR Unmodified 1155.5996 0.59963426 2135 Q8IUI8-2;Q8IUI8 CRLF3 Cytokine receptor-like factor 3 yes no 0 0 0 0 1 3.5 0.5 1 1 27.307 27.307 3 0.0012286 6226 TMT1-2 94.616 61.391 108.03 137.53 120.83 102 121.7 96.731 102 138 124 102 124 94 2 2 2 2 2 2 14782 19032 2135 18809 29228;29229 37751;37752 37751 2 VETWDVK Unmodified 875.43888 0.43888309 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 5 0 1 51.671 51.671 2 0.0088168 14664 TMT1-4 75.38 9.1219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19033 2061 18810 29230 37753 37753 1 VEVEEDGQLK Unmodified 1144.5612 0.56118307 887;257 O75190-2;O75190-3;O75190;Q8NHS0;O75190-4;P25686-2;P25686 DNAJB6;DNAJB8;DNAJB2 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 8;DnaJ homolog subfamily B member 2 no no 0 0 0 0 0 2.5 0.5 1 1 47.56 47.56 2;3 1.6586E-05 14142 TMT1-2 100.48 80.27 61.613 56.614 56.44 58.556 78.394 75.581 58 58 58 58 80 73 1 1 1 1 1 1 7903.3 19034 257;887 18811 29231;29232 37754;37755 37755 2 VEVERDNLAEDIMR Unmodified 1687.8199 0.81993373 575 P08670 VIM Vimentin yes yes 0 0 0 0 1 2.5 1.12 1 1 1 1 54.241 54.241 3 1.47E-53 16715 TMT1-1 222.55 182.31 652.75 1402.5 733.66 829.1 838.92 1692.3 619 1371 793 813 894 1610 7 7 7 7 7 7 227450 19035 575 18812 29233;29234;29235;29236 37756;37757;37758;37759;37760;37761;37762 37758 7 VEVQLPELFHK Unmodified 1337.7343 0.73433683 1691 Q13303-4;Q13303-2;Q13303;Q13303-3;Q13303-5 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 0 0 0 0 0 7 0 1 65.829 65.829 3 0.015904 19777 TMT1-6 55.899 43.539 61.491 72.465 63.422 50.506 77.445 113.98 58 73 65 51 80 109 1 1 1 1 1 1 5970.8 19036 1691 18813 29237 37763 37763 1 VEVTEFEDIK Unmodified 1207.5972 0.59723423 1548 Q01105-3;Q01105-4;Q01105-2;Q01105;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 0 2.75 0.829 2 1 1 62.709 62.709 2;3 1.0516E-39 19111 TMT1-3 229.48 106.71 591.45 816.25 532.38 460.25 632.56 732.41 558 813 559 461 649 704 5 5 5 5 5 5 139610 19037 1548 18814 29238;29239;29240;29241 37764;37765;37766;37767;37768 37767 5 VEVVEER Unmodified 858.4447 0.44469675 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 2 0 1 37.845 37.845 2 0.010348 10123 TMT1-1 108.46 37.548 138.99 173.81 117.1 109.08 163.72 173.35 131 174 123 109 167 167 1 1 1 1 1 1 20728 19038 1796 18815 29242 37769 37769 1 VEVYLTELK Unmodified 1092.6067 0.6066767 3012 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8;Q9Y4E8-4 USP15 Ubiquitin carboxyl-terminal hydrolase 15 yes no 0 0 0 0 0 6 0 1 67.658 67.658 2 0.0032402 21091 TMT1-5 102.07 34.086 53.914 56.606 87.941 56.681 78.224 83.048 51 58 87 58 80 80 1 1 1 1 1 1 6767.9 19039 3012 18816 29243 37770 37770 1 VEWSAFLEAADNLR Unmodified 1619.7944 0.79437091 2875 Q9UI30 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes yes 0 0 0 0 0 6 0 1 82.262 82.262 3 0.0012702 26809 TMT1-5 69.258 43.61 15.855 21.976 21.733 15.1 0 15.99 15 22 22 15 0 15 1 1 1 1 0 1 3447 19040 2875 18817 29244 37771 37771 1 VEYSEEELK Unmodified 1124.5237 0.52373493 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 2.33 0.471 2 1 48.372 48.372 2;3 0.00016745 14315 TMT1-1 147.51 64.243 306.52 511.92 346.95 304.34 443.82 467.04 290 506 363 305 453 450 3 3 3 3 3 3 67079 19041 675 18818 29245;29246;29247 37772;37773;37774 37772 3 VEYTLGEESEAPGQR Unmodified 1663.7689 0.76894402 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 0 2.5 0.5 1 1 48.105 48.105 2;3 0.00014718 14239 TMT1-1 89.663 77.797 30.353 74.535 65.219 35.207 71.626 90.698 29 73 66 37 73 87 2 2 2 2 2 2 9204.6 19042 1584 18819 29248;29249 37775;37776 37775 2 VEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSR Unmodified 4295.9481 0.94811353 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.75 1.64 1 1 2 73.101 73.101 4;5 4.5145E-34 23411 TMT1-3 106.66 98.858 165.87 154.86 123.79 113.9 176.81 181.5 156 158 126 114 180 175 6 6 5 6 6 6 294880 19043 831 18820 29250;29251;29252;29253 37777;37778;37779;37780;37781;37782 37779 6 VEYVIGR Unmodified 834.45995 0.45995289 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 5.5 0.5 1 1 47.17 47.17 2 0.0012853 12962 TMT1-4 148.21 82.309 2512.5 2523.2 2628.8 1962.3 2224.7 2860.6 2368 2572 2662 1977 2307 2743 3 3 3 3 3 3 730140 19044 393 18821 29254;29255 37783;37784;37785 37784 3 VFADYEAYMQCQAQVDQLYR Unmodified 2497.1042 0.10423044 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 6 0 1 76.667 76.667 3 3.9108E-07 24686 TMT1-5 86.727 73.669 15.789 36.902 20.175 29.969 27.923 30.117 15 36 22 29 29 29 1 1 1 1 1 1 6225.8 19045 648 18822 29256 37786 37786 1 VFADYEAYVK Unmodified 1203.5812 0.58119023 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 6 0 1 65.087 65.087 3 0.0019481 20170 TMT1-5 84.213 60.182 22.954 51.614 65.917 26.956 43.217 45.671 22 51 65 29 44 44 1 1 1 1 1 1 21663 19046 515 18823 29257 37787 37787 1 VFAECNDESFWFR Unmodified 1705.7195 0.7194914 2772 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 0 0 0 6 0 1 72.861 72.861 3 0.0007824 23134 TMT1-5 77.185 66.129 38.21 51.24 26.793 29.579 27.684 37.586 36 51 29 29 29 36 1 1 1 1 1 1 4724.5 19047 2772 18824 29258 37788 37788 1 VFAIPPSFASIFLTK Unmodified 1636.9229 0.92286588 423 P0DOX6;P01871;P01871-2 IGHM Ig mu chain C region yes no 0 0 0 0 0 9 0 1 93.403 93.403 3 1.3763E-05 28709 TMT1-8 82.55 52.861 85.088 70.826 66.341 66.564 86.146 82.822 80 73 66 66 88 80 3 3 2 3 3 3 3255.9 19048 423 18825 29259 37789;37790;37791 37790 3 VFAMSPEEFGK Unmodified 1240.5798 0.57981002 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 7 0 1 66.422 66.422 2 0.0010094 19952 TMT1-6 100.48 73.148 68.858 102.85 61.868 43.636 40.875 91.576 65 102 65 44 44 87 1 1 1 1 1 1 22381 19049 1623 18826 29260 37792 37792 1 VFANAPDSACVIGLK Unmodified 1560.797 0.79701344 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 8 0 1 65.927 65.927 3 2.1567E-06 19866 TMT1-7 102.28 78.901 122.4 184.32 191.83 192.33 149.37 266.5 116 184 196 189 160 254 1 1 1 1 1 1 34505 19050 765 18827 29261 37793 37793 1 VFASELNAGIIK Unmodified 1260.7078 0.70778773 2829 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 66.484 66.484 3 0.0076567 20089 TMT1-7 61.932 29.578 146.78 142.78 96.124 110.74 141.67 143.07 138 145 102 109 145 138 1 1 1 1 1 1 12395 19051 2829 18828 29262 37794 37794 1 VFASLPQVER Unmodified 1144.6241 0.6240581 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 7.5 0.5 1 1 57.694 57.694 2 1.1298E-20 16488 TMT1-6 198.61 144.93 829.95 1170.8 1084.2 877.74 919.47 1048.3 785 1170 1107 878 952 1008 3 3 3 3 3 3 339970 19052 250 18829 29263;29264 37795;37796;37797 37795 3 VFAVSHGR Unmodified 871.46644 0.46643525 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 8 0 1 31.86 31.86 3 0.00113 6496 TMT1-7 113.5 81.568 77.54 62.602 79.543 64.426 99.84 113.35 73 65 80 65 102 109 1 1 1 1 1 1 5786.9 19053 442 18830 29265 37798 37798 1 VFDAIMNFK Unmodified 1083.5423 0.54230231 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 9 0 1 76.058 76.058 3 0.00075956 22036 TMT1-8 101.64 72.917 61.155 94.194 101.59 63.269 91.517 113.58 58 94 102 65 94 109 1 1 1 1 1 1 14603 19054 685 18831 29266 37799 37799 1 VFDEFKPLVEEPQNLIK Unmodified 2044.0881 0.088093311 28 CON__P02768-1;P02768;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 1 5.4 2.24 1 2 2 75.433 75.433 3;4;5 1.3982E-13 24129 TMT1-5 117.4 83.996 2209.4 2556.5 2499.4 1722.9 2406.4 3100.6 2085 2582 2533 1754 2478 2973 10 10 10 10 10 10 556970 + 19055 28 18832 29267;29268;29269;29270;29271 37800;37801;37802;37803;37804;37805;37806;37807;37808;37809 37803 10 VFDINLK Unmodified 847.48035 0.48035398 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 7.5 0.5 1 1 64.471 64.471 2;3 0.011901 19291 TMT1-6 103.92 29.503 245.66 413.31 380.9 216.36 364.91 293.4 233 410 385 225 368 285 2 2 2 2 2 2 46478 19056 1079 18833 29272;29273 37810;37811 37810 2 VFDKDGNGYISAAELR Unmodified 1753.8635 0.8635131 621 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 1 6 0 1 56.556 56.556 3 1.5086E-11 16676 TMT1-5 124.29 96.003 450.59 817.48 581.51 416 562.67 603.29 427 806 602 422 576 581 2 2 2 2 2 2 90417 19057 621 18834 29274 37812;37813 37812 2 VFDLLKDEAPQK Unmodified 1401.7504 0.75038083 363 O95671-3;O95671;O95671-2 ASMTL N-acetylserotonin O-methyltransferase-like protein yes no 0 0 0 0 1 7 0 1 63.653 63.653 4 0.019639 18918 TMT1-6 53.252 24.446 68.516 117.01 107.37 71.937 77.266 90.537 65 116 109 73 80 87 1 1 1 1 1 1 5500.4 19058 363 18835 29275 37814 37814 1 VFDMLNRR Unmodified 1049.544 0.54403364 1358;1765 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 1 9 0 1 50.075 50.075 3 0.011445 11822 TMT1-8 81.642 48.247 92.516 92.747 61.672 58.978 39.363 115.07 87 94 65 58 44 109 1 1 1 1 1 1 6358.6 19059 1358;1765 18836 29276 37815 37815 1 VFDPQNDKPSK Unmodified 1273.6303 0.63026569 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 1 6.33 0.471 2 1 44.555 44.555 3;4 0.0013202 11913 TMT1-5 89.44 71.304 1339.8 1888.5 2242 1481.2 1658.3 2057 1270 1895 2244 1506 1718 1974 3 3 3 3 3 3 169240 19060 130 18837 29277;29278;29279 37816;37817;37818 37816 3 VFEGNRPTNSIVFTK Unmodified 1707.8944 0.8944193 516;35 P06744;P06744-2;CON__Q3ZBD7 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 1 8 0 2 53.175 53.175 3;4 7.2287E-11 14831 TMT1-7 126.77 96.963 667.37 869.84 712.36 565.45 686.58 785.24 630 871 733 568 707 755 2 2 2 2 2 2 100940 + 19061 516;35 18838 29280;29281 37819;37820 37819 2 VFEHIGK Unmodified 828.44939 0.4493882 457 P04040 CAT Catalase yes yes 0 0 0 0 0 6.5 0.5 1 1 43.266 43.266 3 0.0052998 10992 TMT1-6 91.9 35.778 768.41 961.85 783.23 539.58 617.07 1077.2 725 965 803 547 649 1027 3 3 3 3 3 3 71029 19062 457 18839 29282;29283 37821;37822;37823 37823 3 VFEISPFEPWITR Unmodified 1619.8348 0.83477916 1906 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 0 8 0 1 84.01 84.01 2 5.8625E-09 26866 TMT1-7 129.16 62.561 61.702 56.863 41.204 60.179 40.37 84.128 58 58 44 58 44 80 2 2 2 2 2 2 8988.2 19063 1906 18840 29284 37824;37825 37824 2 VFELMTSLHTK Unmodified 1304.6799 0.67985842 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 9 0 1 64.108 64.108 3 4.035E-05 17408 TMT1-8 100.31 64.869 122.43 184.39 187.07 129.11 155.58 231.15 116 184 189 131 162 221 1 1 1 1 1 1 66100 19064 1603 18841 29285 37826 37826 1 VFEPNEEALGVVLHK Unmodified 1679.8883 0.88827129 184 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 0 6 0 1 65.455 65.455 3 1.5984E-10 20282 TMT1-5 118.52 97.859 61.556 80.2 45.99 91.362 52.532 114.69 58 80 51 87 58 109 1 1 1 1 1 1 9511.1 19065 184 18842 29286 37827 37827 1 VFESIGK Unmodified 778.4225 0.42250475 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 7 0 1 53.431 53.431 2 0.0079842 14845 TMT1-6 121.29 61.651 349.37 596.21 287.26 530.1 601.05 581.94 330 587 322 511 617 562 1 1 1 1 1 1 64424 19066 1012 18843 29287 37828 37828 1 VFFASWR Unmodified 911.46537 0.46537261 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 9 0 1 64.952 64.952 2 8.4658E-08 17640 TMT1-8 178.24 144.24 444.88 743.33 521.27 484.51 540.12 619.92 421 735 545 481 558 596 2 2 2 2 2 2 106890 19067 489 18844 29288 37829;37830 37829 2 VFFDLMR Unmodified 926.46841 0.46840908 650;649 P11234;P11234-2;P11234-3;P11233 RALB;RALA Ras-related protein Ral-B;Ras-related protein Ral-A no no 0 0 0 0 0 9 0 1 72.583 72.583 2 0.0080988 20645 TMT1-8 131.3 81.976 76.988 101 139.77 69.595 99.089 128.29 73 102 138 73 102 123 1 1 1 1 1 1 37491 19068 650;649 18845 29289 37831 37831 1 VFGAPEVLENLEVK Unmodified 1542.8294 0.82935943 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 6 0 1 76.379 76.379 3 2.1318E-05 24567 TMT1-5 92.906 59.497 54.162 64.85 39.383 91.154 84.518 66.878 51 65 44 87 87 65 1 1 1 1 1 1 15883 19069 2259 18846 29290 37832 37832 1 VFGAPNVVEDEIDQYLSK Unmodified 2021.9946 0.99458686 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 5 0 2 87.368 87.368 3;4 0.0012564 28555 TMT1-4 57.338 38.973 46.917 58.548 0 54.408 71 83.254 44 58 0 51 73 80 2 2 0 2 2 2 12563 19070 2238 18847 29291;29292 37833;37834 37833 2 VFGFSLITNK Unmodified 1124.623 0.62299547 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 9 0 2 73.181 73.181 2;3 1.7286E-17 20973 TMT1-8 186.41 99.088 616.32 1020.7 868.07 710.42 795.53 982.54 584 1012 891 711 824 943 3 3 3 3 3 3 182330 19071 394 18848 29293;29294 37835;37836;37837 37837 3 VFGIQLK Unmodified 803.49052 0.49052473 2927 Q9UNF1-2;Q9UNF1 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 0 0 9 0 1 63.424 63.424 2 0.011057 17047 TMT1-8 118.06 56.219 222.34 297.9 249.96 156.2 201.31 234.11 210 298 255 160 207 225 1 1 1 1 1 1 23588 19072 2927 18849 29295 37838 37838 1 VFGNEIK Unmodified 805.4334 0.43340378 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 7 0 1 50.354 50.354 2 0.0076556 13656 TMT1-6 125.25 33.626 635.44 1524.1 654.58 790.72 1038.2 1210.1 603 1483 725 777 1067 1163 1 1 1 1 1 1 83651 19073 786 18850 29296 37839 37839 1 VFHAGFGVVLGEDK Unmodified 1473.7616 0.76161421 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 61.003 61.003 3 0.0031178 17943 TMT1-7 47.532 24.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19074 1296 18851 29297 37840 37840 1 VFHLLGVDTLVVTNAAGGLNPK Unmodified 2234.2423 0.24230254 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 9 0 1 76.413 76.413 4 4.0117E-17 22154 TMT1-8 106.67 85.852 221.89 366.81 266.88 193.53 254.81 270.95 210 363 276 196 261 261 2 2 2 2 2 2 71781 19075 394 18852 29298 37841;37842 37841 2 VFHSGTAAK Unmodified 916.47667 0.47666558 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 8 0 1 31.916 31.916 3 0.0089324 6583 TMT1-7 67.563 36.19 176.99 201.81 198.15 190.64 219.63 202.67 167 204 203 189 225 196 2 2 2 2 2 2 18226 19076 2753 18853 29299 37843;37844 37844 2 VFHYFESNSEPTTWASIIR Unmodified 2283.096 0.096032235 1594 Q05397-7;Q05397;Q05397-5 PTK2 Focal adhesion kinase 1 yes no 0 0 0 0 0 8 0 1 70.722 70.722 3 5.5281E-12 21772 TMT1-7 93.39 81.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19077 1594 18854 29300 37845 37845 1 VFIASSSGFVAIK Unmodified 1324.7391 0.73908786 2885 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 0 0 9 0 2 69.108 69.108 2;3 2.0852E-22 19295 TMT1-8 173.64 123.03 321.74 381.9 425.4 295.45 319.37 478.05 304 386 428 299 334 457 5 5 5 5 5 5 59521 19078 2885 18855 29301;29302 37846;37847;37848;37849;37850 37850 5 VFIASSSGFVAIKK Unmodified 1452.8341 0.83405088 2885 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 0 1 9 0 1 61.744 61.744 3 3.645E-06 16408 TMT1-8 99.941 65.409 92.202 100.51 107.9 79.444 83.187 121.28 87 102 109 80 87 116 1 1 1 1 1 1 6520.2 19079 2885 18856 29303 37851 37851 1 VFIGNLNTALVK Unmodified 1287.7551 0.75507227 2896 Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 0 9 0 2 69.23 69.23 2;3 3.8691E-12 19344 TMT1-8 159.83 0 129.82 242.91 157.24 184.71 199.53 156.34 123 239 167 181 204 152 2 2 2 2 2 2 51380 19080 2896 18857 29304;29305 37852;37853 37852 2 VFIGNLNTLVVK Unmodified 1315.7864 0.7863724 547 P07910-2;P07910-4;P07910;P0DMR1;O60812;B7ZW38;B2RXH8;P07910-3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 0 0 0 0 0 9 0 1 73.292 73.292 3 2.4049E-08 20987 TMT1-8 131.43 98.935 388.67 629.25 507.43 396.52 554.82 766.61 368 624 522 400 573 734 2 2 2 2 2 2 100450 19081 547 18858 29306 37854;37855 37855 2 VFIMDNCEELIPEYLNFIR Unmodified 2414.165 0.16503978 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 6.5 0.5 1 1 93.603 93.603 3 1.0213E-09 30444 TMT1-6 96.153 89.2 55.102 89.231 41.025 77.54 62.57 84.561 52 88 45 74 66 81 4 4 3 3 4 4 22769 19082 545 18859 29307;29308 37856;37857;37858;37859 37859 4 VFIMDNCEELIPEYLNFIR Oxidation (M) 2430.16 0.1599544 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 0 7 0 1 89.212 89.212 3 3.4638E-06 28780 TMT1-6 81.723 79.389 11.66 10.666 15.054 10.717 21.736 22.832 11 11 15 11 22 22 1 1 1 1 1 1 5768.5 19083 545 18859 29309 37860 37860 100 1 VFIMDSCDELIPEYLNFIR Unmodified 2373.1385 0.13849068 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 6.5 0.5 1 1 94.723 94.723 3 2.3238E-11 30726 TMT1-6 104.2 94.825 55.406 33.953 36.818 30.578 89.156 43.294 52 36 37 30 88 43 4 4 3 2 4 4 19674 19084 561 18860 29310;29311 37861;37862;37863;37864 37863 4 VFIMDSCDELIPEYLNFIR Oxidation (M) 2389.1334 0.1334053 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 0 0 7 0 1 90.235 90.235 3 0.014325 29159 TMT1-6 48.907 39.743 15.682 29.049 44.845 21.116 13.672 30.524 15 29 44 22 15 29 1 1 1 1 1 1 3023.5 19085 561 18860 29312 37865 37865 102 1 VFIPHGLIMDR Unmodified 1296.7013 0.70126256 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 8.5 0.5 1 1 59.31 59.31 3 4.8339E-11 15453 TMT1-8 149.23 116.63 123.12 144.22 105.16 78.608 136.33 128.29 116 145 109 80 138 124 2 2 2 2 2 2 20291 19086 395 18861 29313;29314 37866;37867 37867 2 VFITDDFHDMMPK Unmodified 1594.716 0.71598593 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 6 0 1 68.188 68.188 3 7.8433E-05 21301 TMT1-5 95.018 73.767 54.066 64.584 55.636 66.72 53.665 114.66 51 65 58 65 58 109 1 1 1 1 1 1 8209.4 19087 708 18862 29315 37868 37868 1 VFIWTCDDASSNTWSPK Unmodified 2012.8938 0.89382695 1322 P55735-2;P55735;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 0 8 0 1 73.785 73.785 3 9.5819E-06 22940 TMT1-7 85.619 61.578 130.74 120.28 106.54 79.102 105.69 136.63 123 123 109 80 109 131 2 2 2 2 2 2 17193 19088 1322 18863 29316 37869;37870 37869 2 VFLAEFK Unmodified 852.47454 0.47454032 1585 Q04759;Q04759-2;Q04759-3 PRKCQ Protein kinase C theta type yes no 0 0 0 0 0 8 0 1 66.516 66.516 2 0.010436 20100 TMT1-7 108.09 63.951 68.77 93.971 84.201 88.639 76.242 98.028 65 94 87 87 80 94 1 1 1 1 1 1 7652.4 19089 1585 18864 29317 37871 37871 1 VFLALAAK Unmodified 831.52182 0.52182486 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 9 0 1 67.098 67.098 2 0.0061951 18531 TMT1-8 105.22 58.866 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19090 1507 18865 29318 37872 37872 1 VFLALVEEVEDR Unmodified 1417.7453 0.74529545 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 5.5 0.5 1 1 87.842 87.842 2;3 0.00023653 28744 TMT1-4 90.913 76.755 23.339 51.903 20.267 37.764 26.758 53.602 22 51 22 36 29 51 1 3 1 1 2 2 7528.6 19091 2642 18866 29319;29320 37873;37874;37875 37873 3 VFLATNSDYK Unmodified 1156.5764 0.57643921 1207 P49902-2;P49902 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 0 0 0 0 8 0 1 55.93 55.93 2 0.0014347 15951 TMT1-7 73.841 44.032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19092 1207 18867 29321 37876 37876 1 VFLDHNALPDTLK Unmodified 1481.7878 0.78782897 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 7 0 3 59.814 59.814 2;3;4 6.1705E-06 17444 TMT1-6 107.65 62.213 912.49 1521.3 981.72 779.12 909.11 1451.5 863 1503 1028 782 951 1386 5 5 5 5 5 5 113130 19093 485 18868 29322;29323;29324 37877;37878;37879;37880;37881 37879 5 VFLDPNILSDDGTVALR Unmodified 1843.968 0.96797818 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 6 0 2 80.213 80.213 2;3 2.7569E-09 26014 TMT1-5 110.92 77.514 30.49 67.361 48.284 60.668 50.043 45.476 29 66 51 59 52 44 2 2 2 2 2 2 22520 19094 1150 18869 29325;29326 37882;37883 37882 2 VFLENVIR Unmodified 988.57057 0.57056597 1443 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 0 6.6 2.87 1 1 2 1 63.238 63.238 2 1.3172E-26 18742 TMT1-7 209.9 109.14 24336 44852 27769 29897 35226 34918 23045 44133 29496 29474 36136 33699 11 11 11 11 11 11 5919600 19095 1443 18870 29327;29328;29329;29330;29331 37884;37885;37886;37887;37888;37889;37890;37891;37892;37893;37894 37890 11 VFLIYEGYEGLVEGGENIK Unmodified 2128.0728 0.072837177 765 P17858;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 0 0 6 0 2 86.084 86.084 3;4 3.6969E-13 28292 TMT1-5 106.93 87.854 115.62 122.11 121.65 103.51 96.944 145.41 109 124 124 103 102 139 4 4 4 4 4 4 10600 19096 765 18871 29332;29333 37895;37896;37897;37898 37898 4 VFLLGEEVAQYDGAYK Unmodified 1800.8934 0.89341625 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 6 0 2 77.805 77.805 2;4 8.1006E-11 25078 TMT1-5 105.03 87.665 38.358 19.272 29.058 21.782 28.299 30.106 36 21 29 22 29 29 1 1 1 1 1 1 3953.4 19097 645 18872 29334;29335 37899;37900 37900 2 VFLQYLPAIR Unmodified 1218.7125 0.71247918 1773 Q14344;Q14344-2 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 0 9 0 1 75.885 75.885 2 0.00019515 21944 TMT1-8 128.61 72.891 107.49 207.24 153.61 122.5 206.28 256.35 102 204 159 124 211 246 2 2 2 2 2 2 29928 19098 1773 18873 29336 37901;37902 37901 2 VFLSGMPELR Unmodified 1147.606 0.6059652 2569 Q9BXS5;Q9BXS5-2;Q9Y6Q5;Q9Y6Q5-2 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 yes no 0 0 0 0 0 9 0 1 66.993 66.993 2 0.006404 18485 TMT1-8 88.177 52.976 61.182 79.161 109.68 71.803 77.016 98.006 58 80 109 73 80 94 1 1 1 1 1 1 8909.7 19099 2569 18874 29337 37903 37903 1 VFMQEFK Unmodified 927.45242 0.45242467 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 8 0 1 60.636 60.636 2 0.0028444 17844 TMT1-7 140.98 59.2 591.44 982.6 574.23 608.24 476.48 1058.8 559 970 613 596 517 1006 2 2 2 2 2 2 156170 19100 129 18875 29338 37904;37905 37905 2 VFNETPINPR Unmodified 1185.6142 0.6142217 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 6 0 1 48.965 48.965 2 0.00043402 13714 TMT1-5 117.7 73.349 77.253 124.4 75.43 73.556 92.363 75.182 73 123 80 73 94 73 1 1 1 1 1 1 10446 19101 3047 18876 29339 37906 37906 1 VFNLYPR Unmodified 907.49159 0.49158736 1892 Q16555-2;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 0 9 0 1 56.647 56.647 2 0.0078223 14392 TMT1-8 132.72 93.175 263.76 345.65 281.46 254.39 227.26 382.61 249 346 291 252 241 365 1 1 1 1 1 1 32457 19102 1892 18877 29340 37907 37907 1 VFNPYTEFK Unmodified 1143.5601 0.56006086 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 7 0 1 63.223 63.223 2 0.02463 18754 TMT1-6 76.17 42.373 176.19 372.26 188.5 250.73 193.17 375.05 167 364 206 243 208 357 1 1 1 1 1 1 27632 19103 2376 18878 29341 37908 37908 1 VFNTTPDDLDLHVIYDVSHNIAK Unmodified 2625.3075 0.30748157 3001 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 0 6 0 1 74.045 74.045 4 4.6796E-13 23588 TMT1-5 98.121 90.409 61.289 94.568 78.676 42.668 39.05 145.99 58 94 80 44 44 138 1 1 1 1 1 1 18688 19104 3001 18879 29342 37909 37909 1 VFNVFCLYGNVEK Unmodified 1587.7755 0.77554972 713 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 0 9 0 2 77.81 77.81 3;4 2.6112E-13 22689 TMT1-8 138.42 102.68 153.15 241.62 203.86 181.7 211.69 232.74 145 240 210 181 218 224 3 3 3 3 3 3 45347 19105 713 18880 29343;29344 37910;37911;37912 37910 3 VFNYNTLER Unmodified 1154.572 0.57202253 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 0 6 0 1 52.268 52.268 2 0.002117 15038 TMT1-5 105.94 70.109 161.28 156.48 172.68 120.95 170.24 180.63 152 160 174 123 174 174 1 1 1 1 1 1 22317 19106 1021 18881 29345 37913 37913 1 VFPDKEVMLDAALALAAEISSK Unmodified 2317.2239 0.22393487 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 1 9 0 2 101.2 101.2 3;4 5.7197E-33 31431 TMT1-8 138.04 120.67 115.86 252.49 150.15 162.52 181.36 258.13 110 247 160 160 189 247 3 3 3 3 3 3 30175 19107 1663 18882 29346;29347 37914;37915;37916 37914 3 VFPGSTTEDYNLIVIER Unmodified 1951.9891 0.98910755 1688 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 0 5 0 1 71.763 71.763 3 4.7273E-19 22501 TMT1-4 136.63 111.07 23.178 44.682 34.138 45.255 42.669 37.158 22 44 36 44 44 36 1 1 1 1 1 1 15693 19108 1688 18883 29348 37917 37917 1 VFPLSCAVQQYAWGK Unmodified 1752.8658 0.86576171 1011 P34949;P34949-2 MPI Mannose-6-phosphate isomerase yes no 0 0 0 0 0 9 0 1 76.122 76.122 3 7.5931E-06 22079 TMT1-8 89.507 67.675 68.512 109.44 114.4 94.219 90.643 97.617 65 109 116 94 94 94 1 1 1 1 1 1 11577 19109 1011 18884 29349 37918 37918 1 VFPPLTSLPGPVYEK Unmodified 1642.897 0.89704506 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 9 0 1 75.26 75.26 3 0.00030888 21815 TMT1-8 65.472 44.242 46.521 49.892 73.859 42.625 56.642 60.212 44 51 73 44 58 58 1 1 1 1 1 1 8631.2 19110 1530 18885 29350 37919 37919 1 VFQEFLK Unmodified 909.496 0.49600404 3079 yes no 0 0 0 0 0 7.5 0.5 1 1 64.288 64.288 2 0.0077529 19269 TMT1-7 124.08 0 651.91 1231.6 839.67 865.48 1125.9 1113.8 618 1212 883 857 1151 1075 3 3 3 3 3 3 158590 + 19111 3079 18886 29351;29352 37920;37921;37922 37922 3 VFQFLNAK Unmodified 965.53345 0.53345218 1517 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 0 0 9 0 1 67.33 67.33 2 0.0019455 18666 TMT1-8 135.16 66.738 222.72 314.06 173.17 255.11 241.17 372.61 210 312 189 247 254 356 2 2 2 2 2 2 50724 19112 1517 18887 29353 37923;37924 37924 2 VFQPSPLASQFELPGDFFNLTAEEIKR Unmodified 3079.5655 0.56548717 2590 Q9BZV1-2;Q9BZV1 UBXN6 UBX domain-containing protein 6 yes no 0 0 0 0 1 8 0 1 88.136 88.136 4 7.3163E-12 28423 TMT1-7 88.517 77.206 38.411 28.054 12.663 37.942 34.629 37.388 36 29 15 36 36 36 1 1 1 1 1 1 4206.5 19113 2590 18888 29354 37925 37925 1 VFQQVAQASK Unmodified 1104.5928 0.59275797 487 P05121 SERPINE1 Plasminogen activator inhibitor 1 yes yes 0 0 0 0 0 8 0 1 49.463 49.463 3 0.00089272 13433 TMT1-7 92.428 56.484 329.97 464.52 414.53 354.39 474.03 494.96 312 464 425 355 485 477 2 2 2 2 2 2 20576 19114 487 18889 29355 37926;37927 37927 2 VFQSLPHENKPLTLSNYQTNK Unmodified 2457.2652 0.26522283 460 P04080 CSTB Cystatin-B yes yes 0 0 0 0 1 8 0 1 54.237 54.237 4 3.9222E-10 15300 TMT1-7 92.913 78.506 108.19 153.08 81.167 72.662 121.71 105.26 102 152 87 73 123 102 1 1 1 1 1 1 18401 19115 460 18890 29356 37928 37928 1 VFQSSANYAENFIQSIISTVEPAQR Unmodified 2798.3875 0.38752281 1043 P36871 PGM1 Phosphoglucomutase-1 yes yes 0 0 0 0 0 9 0 1 103.33 103.33 3 2.356E-48 32246 TMT1-8 153.88 130.14 4.2381 6.0323 3.9447 0 6.1356 4.0889 4 6 4 0 6 4 1 1 1 0 1 1 5671.3 19116 1043 18891 29357 37929 37929 1 VFQVVESTRPGK Unmodified 1345.7354 0.73539946 2951 Q9Y251-2;Q9Y251;Q9Y251-4 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 1 8 0 2 49.096 49.096 3;4 0.00010372 13237 TMT1-7 101.6 79.209 557.52 864.16 603.67 718.05 937.12 869.76 527 857 638 706 956 841 2 2 2 2 2 2 48649 19117 2951 18892 29358;29359 37930;37931 37930 2 VFSATLGLVDIVK Unmodified 1360.7966 0.79660274 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 3 81.848 81.848 2;3 6.5062E-11 24378 TMT1-8 127.17 87.256 23.347 36.52 12.571 30.305 34.174 60.853 22 36 15 29 36 58 1 1 1 1 1 1 11590 19118 606 18893 29360;29361;29362 37932;37933;37934 37932 3 VFSAYIK Unmodified 826.45889 0.45889025 2314 Q92747;Q92747-2 ARPC1A Actin-related protein 2/3 complex subunit 1A yes no 0 0 0 0 0 9 0 1 58.226 58.226 2 0.025542 15026 TMT1-8 91.906 41.867 138.82 180.89 139.83 123.7 127.73 105.09 131 181 145 123 131 102 1 1 1 1 1 1 7611.4 19119 2314 18894 29363 37935 37935 1 VFSGLVSTGLK Unmodified 1106.6336 0.63356015 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 9 0 1 65.816 65.816 2 6.7251E-06 18070 TMT1-8 113.93 68.558 169.2 300.82 162.6 151.8 246.77 195.5 160 296 174 152 249 190 1 1 1 1 1 1 67263 19120 685 18895 29364 37936 37936 1 VFSIGPVFR Unmodified 1020.5757 0.57565135 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 67.463 67.463 2 0.0017319 18635 TMT1-8 116.9 86.235 153 269.25 206.56 180.86 247.62 223.19 145 266 214 181 252 216 1 1 1 1 1 1 32680 19121 714 18896 29365 37937 37937 1 VFSIPFHK Unmodified 973.53854 0.53853756 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 58.855 58.855 3 0.0010617 15324 TMT1-8 103.92 49.51 138.58 212.59 153.51 138.21 184.86 188.74 131 211 160 138 189 182 2 2 2 2 2 2 34022 19122 758 18897 29366 37938;37939 37939 2 VFSLSSEFK Unmodified 1042.5335 0.53351176 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 8 0 1 64.67 64.67 2 0.00041607 19380 TMT1-7 138.4 73.144 138.88 165.95 141.77 100.08 157.06 166.08 131 167 145 102 160 160 1 1 1 1 1 1 13410 19123 293 18898 29367 37940 37940 1 VFSSSQGVEQVVLGLYIVR Unmodified 2079.1364 0.13644049 368 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 0 9 0 1 85.168 85.168 3 2.0361E-05 25647 TMT1-8 63.883 53.398 23.305 45.037 12.389 22.925 20.368 46.323 22 44 15 22 22 44 1 1 1 1 1 1 7879.3 19124 368 18899 29368 37941 37941 1 VFSWGFGGYGR Unmodified 1231.5774 0.57744226 2822 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 0 9 0 1 69.861 69.861 2 2.278E-08 19626 TMT1-8 143.7 116.57 92.032 146.44 97.584 79.233 127.14 181.86 87 145 102 80 131 174 1 1 1 1 1 1 18424 19125 2822 18900 29369 37942 37942 1 VFTAIANQPWAQK Unmodified 1472.7776 0.77759863 1886 Q5IFJ8;Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 0 9 0 2 67.33 67.33 2;3 4.1278E-11 18647 TMT1-8 130.23 81.437 77.066 155.18 80.817 81.208 75.227 137.5 73 152 87 80 80 131 2 2 2 2 2 2 18891 19126 1886 18901 29370;29371 37943;37944 37943 2 VFTPGQGNNVYIFPGVALAVILCNTR Unmodified 2819.4793 0.47925512 859 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 0 9 0 1 99.126 99.126 4 7.1736E-08 30685 TMT1-8 59.691 47.949 7.4767 0 5.7676 39.703 20.952 6.8641 7 0 7 37 22 7 1 0 1 1 1 1 2971.5 19127 859 18902 29372 37945 37945 1 VFTTGFSR Unmodified 913.46577 0.46576654 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 9 0 1 50.281 50.281 2 0.0015347 11888 TMT1-8 142.64 84.399 186.11 196.41 293.13 202.26 230.48 328.15 176 201 291 205 240 314 1 1 1 1 1 1 33160 19128 2512 18903 29373 37946 37946 1 VFTTQELVQAFTHAPATLEADR Unmodified 2444.2336 0.23358835 354 O95433-2;O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 0 7.5 0.5 1 1 78.951 78.951 3 1.1348E-22 24869 TMT1-6 117.77 84.461 62.616 41.236 81.215 57.363 63.278 90.936 59 44 80 58 66 87 2 2 2 2 2 2 22107 19129 354 18904 29374;29375 37947;37948;37949 37947 3 VFTTVGSAEK Unmodified 1037.5393 0.53932542 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 7 0 1 49.502 49.502 3 0.00016304 13332 TMT1-6 105.2 66.047 84.867 92.875 84.875 73.145 84.283 97.799 80 94 87 73 87 94 1 1 1 1 1 1 7371.9 19130 1176 18905 29376 37950 37950 1 VFVANPNK Unmodified 887.4865 0.48650199 2985 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 0 8.5 0.5 1 1 45.815 45.815 2 0.0039564 11944 TMT1-7 128.48 91.391 92.307 108.35 83.589 80.333 112.96 136.42 87 109 87 80 116 131 1 1 1 1 1 1 6695.4 19131 2985 18906 29377;29378 37951;37952 37951 2 VFVDGHQLFDFYHR Unmodified 1778.8529 0.85288884 1934 Q3ZCW2 LGALSL Galectin-related protein yes yes 0 0 0 0 0 7.33 0.471 2 1 62.684 62.684 3;4 4.0857E-19 18501 TMT1-6 162.13 142.81 284.42 293.22 279.73 167.26 332.16 277.28 268 298 283 174 334 269 3 3 3 3 3 3 152850 19132 1934 18907 29379;29380;29381 37953;37954;37955 37953 3 VFVEDCATTDLESTR Unmodified 1741.7829 0.78287952 799 P19878-3;P19878;P19878-4 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 3 0 1 56.88 56.88 3 0.0001055 17968 TMT1-2 79.652 58.351 46.755 50.542 34.031 37.092 12.131 54.02 44 51 36 36 15 51 1 1 1 1 1 1 4930 19133 799 18908 29382 37956 37956 1 VFVGEEDPEAESVTLR Unmodified 1775.8578 0.85775902 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 2.86 0.833 3 2 2 60.769 60.769 2;3;4 1.0738E-44 19252 TMT1-1 216.53 203.77 539.84 518.16 623.35 574.29 440.88 800.78 509 531 631 567 473 763 9 9 9 9 9 9 575700 19134 2112 18909 29383;29384;29385;29386;29387;29388;29389 37957;37958;37959;37960;37961;37962;37963;37964;37965 37959 9 VFVLPCIQQIQR Unmodified 1499.8283 0.82825399 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 9 0 2 70.632 70.632 2;3 0.0082682 19866 TMT1-8 55.721 39.714 84.503 131.8 112.95 94.992 112.27 167.36 80 131 116 95 117 160 3 3 3 3 3 3 16099 19135 318 18910 29390;29391 37966;37967;37968 37966 3 VFVSPLAK Unmodified 859.51674 0.51673948 631 P10515 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 0 0 0 0 0 9 0 1 59.542 59.542 2 0.0033421 15544 TMT1-8 114.93 67.026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19136 631 18911 29392 37969 37969 1 VFYELQHSDKPVGTK Unmodified 1746.8941 0.89408495 2339 Q93009-3;Q93009 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 1 7 0 1 49.416 49.416 4 0.00055913 13291 TMT1-6 74.789 61.957 191.86 232.72 198.71 134.87 219.31 195.22 181 234 203 138 222 189 1 1 1 1 1 1 12660 19137 2339 18912 29393 37970 37970 1 VFYIGLR Unmodified 866.50142 0.50142377 2599 Q9GZP4-2;Q9GZP4 PITHD1 PITH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 62.803 62.803 2 0.0119 16830 TMT1-8 115.01 76.808 46.415 73.342 71.779 57.753 72.458 36.308 44 73 73 58 73 36 1 1 1 1 1 1 6469.6 19138 2599 18913 29394 37971 37971 1 VGADITVLR Unmodified 942.54983 0.54983053 2563 Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 52.147 52.147 2 0.0060432 14920 TMT1-5 95.909 34.937 192.74 285 186.21 174.98 218.23 264.54 182 283 196 174 225 254 2 2 2 2 2 2 23763 19139 2563 18914 29395;29396 37972;37973 37973 2 VGAEDADGIDMAYR Unmodified 1481.6457 0.64565776 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 2 0 1 52.407 52.407 2 0.00027864 15877 TMT1-1 89.403 73.513 30.672 35.488 44.756 12.754 51.749 29.437 29 36 44 15 51 29 1 1 1 1 1 1 5013.8 19140 1184 18915 29397 37974 37974 1 VGAENVAIVEPSER Unmodified 1468.7522 0.75217174 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 2 0 1 49.037 49.037 3 8.239E-09 14534 TMT1-1 101.2 88.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19141 3063 18916 29398 37975 37975 1 VGAFTMVCK Unmodified 1011.4882 0.48815825 396 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 57.227 57.227 2 0.016598 14590 TMT1-8 82.75 39.504 92.075 139.01 96.577 111.85 81.147 137.33 87 138 102 109 87 131 1 1 1 1 1 1 7998.9 19142 396 18917 29399 37976 37976 1 VGAHAGEYGAEALER Unmodified 1528.727 0.72701962 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 0 4.08 2.5 1 3 3 1 1 1 1 1 39.398 39.398 2;3;4 1.5773E-43 10928 TMT1-1 208.23 69.679 10722 11866 8949.1 6806.2 3135.1 6026.2 10098 11972 9259 6769 3494 5737 21 21 21 21 21 21 6097100 19143 1499 18918 29400;29401;29402;29403;29404;29405;29406;29407;29408;29409;29410;29411 37977;37978;37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989;37990;37991;37992;37993;37994;37995;37996;37997 37981 21 VGAIPANALDDGQWSQGLISAAR Unmodified 2309.1764 0.17640782 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.14 2.17 1 1 4 1 73.393 73.393 3;4 2.8308E-63 23357 TMT1-5 193.63 167.8 655.55 799.38 773.72 595.98 728.66 889.57 619 805 787 600 752 854 13 13 13 13 13 13 1029600 19144 3010 18919 29412;29413;29414;29415;29416;29417;29418 37998;37999;38000;38001;38002;38003;38004;38005;38006;38007;38008;38009;38010 38000 13 VGASEAALFLK Unmodified 1104.6179 0.61791009 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 7 0 1 64.915 64.915 2 3.0227E-06 19350 TMT1-6 129.38 61.82 100 77.058 78.895 56.955 92.357 97.569 94 80 80 58 94 94 1 1 1 1 1 1 13106 19145 2835 18920 29419 38011 38011 1 VGAVDADK Unmodified 773.39193 0.3919329 1827 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 0 4 0 1 38.58 38.58 2 0.0064109 9753 TMT1-3 105.57 40.53 492.1 497.08 549.59 417.9 621.01 363.91 464 507 555 423 624 358 1 1 1 1 1 1 47538 19146 1827 18921 29420 38012 38012 1 VGAVLEQGQLQNTLHAQLQSALAGLGHEIR Unmodified 3150.6898 0.68979326 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 76.51 76.51 4 3.0311E-30 22188 TMT1-8 104.48 90.43 69.148 64.801 45.469 122.93 61.069 67.547 65 66 51 116 66 65 2 2 2 2 2 2 22532 19147 2066 18922 29421 38013;38014 38013 2 VGCLQLINALITPAEELDFR Unmodified 2271.1933 0.19330344 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 7.33 0.471 2 1 93.501 93.501 3;4 2.7065E-13 30389 TMT1-6 104.84 93.856 78.343 110.62 84.163 90.252 106.79 89.695 74 109 88 89 109 87 5 4 5 5 5 5 44579 19148 228 18923 29422;29423;29424 38015;38016;38017;38018;38019 38016 5 VGDAIPAVEVFEGEPGNK Unmodified 1826.905 0.90504357 947 P30044-2;P30044;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 4.5 0.5 2 2 70.481 70.481 2;3;4 2.4719E-14 22364 TMT1-3 123.08 110.7 499.73 594.24 626.07 512.49 347.19 626.49 472 600 635 509 375 597 6 6 6 6 6 6 122070 19149 947 18924 29425;29426;29427;29428 38020;38021;38022;38023;38024;38025;38026 38023 7 VGDAIPAVEVFEGEPGNKVNLAELFK Unmodified 2741.4276 0.42759671 947 P30044-2;P30044;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 1 6.67 0.471 1 2 84.439 84.439 4;5 9.63E-08 27681 TMT1-5 71.091 61.108 130.99 189.14 186.71 129.73 123.46 221.4 124 189 189 131 131 211 3 3 3 3 3 3 41140 19150 947 18925 29429;29430;29431 38027;38028;38029 38027 3 VGDALLLAISK Unmodified 1098.6649 0.66486028 2946 Q9Y210-3;Q9Y210;Q9Y210-2;Q9HCX4-2;Q9HCX4-3;Q9HCX4 TRPC6;TRPC7 Short transient receptor potential channel 6;Short transient receptor potential channel 7 yes no 0 0 0 0 0 8 0 1 76.347 76.347 2 0.0076038 23974 TMT1-7 81.799 46.699 61.387 94.839 62.059 50.991 56.001 67.692 58 94 65 51 58 65 1 1 1 1 1 1 6019.5 19151 2946 18926 29432 38030 38030 1 VGDDPAVWQLK Unmodified 1226.6295 0.62953741 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4 2.16 1 1 1 62.661 62.661 2;3 3.8018E-42 18993 TMT1-5 224.86 188.17 2510.8 3091 2979.1 2030.5 2664.6 2967.4 2371 3111 3020 2066 2734 2855 4 4 4 4 4 4 746780 19152 3010 18927 29433;29434;29435 38031;38032;38033;38034 38033 4 VGDIIDINEEVEEGWWSGTLNNK Unmodified 2616.2344 0.23437621 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 5 0 1 88.254 88.254 3 0.00013317 28974 TMT1-4 46.273 37.654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19153 3029 18928 29436 38035 38035 1 VGDPAEDFGTFFSAVIDAK Unmodified 1984.9418 0.941823 943 P30038-2;P30038-3;P30038 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes no 0 0 0 0 0 7 0 1 94.712 94.712 3 9.8485E-10 30749 TMT1-6 96.447 74.249 30.64 44.034 42.818 44.743 42.399 45.694 29 44 44 44 44 44 2 2 2 2 2 2 5014 19154 943 18929 29437 38036;38037 38036 2 VGDQVTHIR Unmodified 1023.5461 0.54614213 936 P29350;P29350-3;P29350-4 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 4.5 0.5 1 1 32.494 32.494 3 5.2932E-05 7294 TMT1-3 142.55 99.365 284.39 292.06 285.53 208.71 260.36 332.62 268 297 290 211 269 319 2 2 2 2 2 2 58552 19155 936 18930 29438;29439 38038;38039 38038 2 VGDQVWLFIDEPR Unmodified 1572.7936 0.79364262 1184 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5.5 0.5 1 1 76.92 76.92 2;3 6.4337E-08 24739 TMT1-5 124.86 100.48 68.931 86.865 63.124 36.964 49.317 67.883 65 87 65 36 51 65 2 2 2 1 2 2 12626 19156 1184 18931 29440;29441 38040;38041 38041 2 VGDTSLDPNDFDFTVTGR Unmodified 1954.8909 0.89085007 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 70.611 70.611 3 5.6012E-08 22413 TMT1-3 98.165 81.671 100.87 115.25 82.1 103.51 105.92 97.181 95 116 87 101 109 94 2 2 2 2 2 2 20989 19157 1247 18932 29442;29443 38042;38043 38042 2 VGDVVLPPWASSPEDFIQQHR Unmodified 2376.1862 0.18624423 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 6.5 0.5 1 1 74.222 74.222 3 1.5818E-06 23070 TMT1-6 78.358 61.865 54.112 73.344 40.612 52.132 63.278 67.484 51 73 44 51 65 65 1 1 1 1 1 1 10505 19158 2061 18933 29444;29445 38044;38045 38045 2 VGDVYIPR Unmodified 917.49707 0.49706667 1549 Q01130;Q01130-2;Q9BRL6-2;Q9BRL6 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 0 0 0 0 0 5 0 1 49.408 49.408 2 0.012741 13718 TMT1-4 96.19 22.216 215.44 267.73 173.02 151.58 225.56 234.48 203 268 182 152 230 226 1 1 1 1 1 1 104840 19159 1549 18934 29446 38046 38046 1 VGDYFFGK Unmodified 931.44397 0.44396847 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 8 0 1 63.737 63.737 2 0.02794 19009 TMT1-7 83.265 52.191 192.27 233.87 128.15 138.34 258.01 251.68 181 234 138 138 261 243 1 1 1 1 1 1 21842 19160 2791 18935 29447 38047 38047 1 VGDYGSLSGR Unmodified 1009.4829 0.48287317 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 0 4.5 0.5 1 1 41.981 41.981 2 7.432E-05 11098 TMT1-3 107.08 62.117 91.884 138.48 129.17 85.415 105.14 144.11 87 138 131 87 109 138 1 1 1 1 1 1 9986.5 19161 2844 18936 29448;29449 38048;38049 38048 2 VGDYVYFENSSSNPYLVR Unmodified 2107.9851 0.9850848 324 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 0 0 5 0 1 67.083 67.083 3 0.00090055 20660 TMT1-4 60.542 53.311 30.736 44.3 26.522 45.862 34.521 29.929 29 44 29 44 36 29 1 1 1 1 1 1 9155 19162 324 18937 29450 38050 38050 1 VGEATETALTCLVEK Unmodified 1619.8076 0.80763771 2344;748 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5;P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A3;ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 3.75 1.64 1 1 2 70.724 70.724 3;4 2.5416E-19 21827 TMT1-4 162.37 122.26 652.4 892.78 864.13 748.33 710.43 1034 617 894 882 744 746 989 4 4 4 4 4 4 174150 19163 2344;748 18938 29451;29452;29453;29454 38051;38052;38053;38054 38053 4 VGEFCHNR Unmodified 1017.445 0.44504788 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4.5 0.5 1 1 29.236 29.236 3 0.0010815 5850 TMT1-4 116.9 83.526 115.62 144.77 102.71 133.79 115.71 198.17 109 145 109 130 123 189 2 2 2 2 2 2 14185 19164 845 18939 29455;29456 38055;38056;38057 38057 3 VGEFFSHVVWK Unmodified 1333.6819 0.68190733 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 0 9 0 1 67.768 67.768 3 0.00025346 18807 TMT1-8 88.681 67.779 138.31 181.62 225.52 142.14 154.16 224.79 131 183 225 145 161 215 1 1 1 1 1 1 12432 19165 2744 18940 29457 38058 38058 1 VGEFSGANK Unmodified 907.43995 0.43994572 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 0 5.5 0.5 1 1 42.398 42.398 2 0.00028927 11090 TMT1-5 141.93 77.154 1560 2130.4 1649.2 1612.4 1793.5 1906 1473 2127 1716 1596 1848 1836 3 3 3 3 3 3 214480 19166 632 18941 29458;29459 38059;38060;38061 38060 3 VGEFSGANKEK Unmodified 1164.5775 0.57750184 632 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 1 6 0 1 39.645 39.645 4 0.045597 10081 TMT1-5 46.592 20.051 122.6 184.89 156.63 107.31 132.63 197.69 116 184 160 109 138 189 1 1 1 1 1 1 16263 19167 632 18942 29460 38062 38062 1 VGEIHLLR Unmodified 935.55525 0.55525025 1092 P42226;P42226-3 STAT6 Signal transducer and activator of transcription 6 yes no 0 0 0 0 0 6 0 1 45.695 45.695 3 0.0012185 12445 TMT1-5 107.29 73.937 84.45 161.87 96.377 62.121 169.07 80.456 80 159 101 65 167 80 1 1 1 1 1 1 10054 19168 1092 18943 29461 38063 38063 1 VGELCAGK Unmodified 832.41129 0.41128813 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 4 2.16 1 1 1 43.368 43.368 2 0.0023511 11452 TMT1-5 137.18 42.51 2318.8 3255.9 3371.8 2535.3 3342.9 3251.8 2195 3260 3412 2561 3414 3140 5 5 5 5 5 5 571510 19169 776 18944 29462;29463;29464 38064;38065;38066;38067;38068 38068 5 VGELKDDDFEK Unmodified 1293.6089 0.60886155 1569 Q02750;Q02750-2 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 0 0 1 4 0 1 50.444 50.444 3 0.0007046 14425 TMT1-3 95.018 47.459 264.07 426.56 341.49 206.61 369.13 275.15 250 423 349 214 371 268 1 1 1 1 1 1 26475 19170 1569 18945 29465 38069 38069 1 VGELVGVLAAHCQGEGR Unmodified 1750.8785 0.87845166 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 7 0 1 59.14 59.14 3 1.2345E-07 17136 TMT1-6 74.519 54.282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19171 20 18946 29466 38070 38070 1 VGENADSQIK Unmodified 1059.5197 0.51965261 531 P07305-2;P07305 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 0 4 0 1 38.382 38.382 3 0.00085224 9657 TMT1-3 93.096 37.546 115.39 191.63 100.95 110.15 157.95 126.61 109 189 109 109 160 123 1 1 1 1 1 1 14624 19172 531 18947 29467 38071 38071 1 VGEPVALSEEER Unmodified 1313.6463 0.64630969 1704 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 0 2 0 2 46.077 46.077 2;3 6.4707E-08 13404 TMT1-1 110.74 64.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19173 1704 18948 29468;29469 38072;38073 38073 2 VGEQAQVVIIDMNDPSNPIR Unmodified 2194.1052 0.10521671 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 5 0 1 68.628 68.628 3 6.3402E-10 21292 TMT1-4 95.957 89.841 30.652 51.622 34.421 28.711 49.696 67.872 29 51 36 29 51 65 1 1 1 1 1 1 17221 19174 1540 18949 29470 38074 38074 1 VGETAPPNAYTVTDLVEYSIVIQQLSNGK Unmodified 3105.587 0.58701048 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 6 0 1 93.329 93.329 4 0.030854 30770 TMT1-5 26.187 13.258 15.862 29.551 14.092 6.4041 21.641 31.362 15 29 15 7 22 30 1 1 1 1 1 1 3475.4 19175 1063 18950 29471 38075 38075 1 VGEVIVTK Unmodified 843.50657 0.50656873 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 49.601 49.601 2 0.0048727 13970 TMT1-5 121.96 45.057 904.77 986.22 748.44 737.9 934 1025.5 852 996 781 732 959 987 1 1 1 1 1 1 103620 19176 638 18951 29472 38076 38076 1 VGEVIVTKDDAMLLK Unmodified 1629.9011 0.90114416 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 7 0 1 64.876 64.876 4 0.025493 19412 TMT1-6 46.964 24.161 68.916 71.711 78.61 74.086 54.133 91.197 65 73 80 73 58 87 1 1 1 1 1 1 3926.1 19177 638 18952 29473 38077 38077 1 VGEVTYVELLMDAEGK Unmodified 1751.8652 0.86515259 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 0 5 0 1 82.482 82.482 3 1.2415E-11 26712 TMT1-4 121.79 91.729 53.547 125.74 91.105 62.598 160.39 119.08 51 123 94 65 160 116 1 1 1 1 1 1 19738 19178 1261 18953 29474 38078 38078 1 VGFAEAAR Unmodified 819.4239 0.42390173 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 5 0 1 39.315 39.315 2 0.044478 9719 TMT1-4 76.134 55.163 115.24 175.02 140.29 123.87 117.23 167.21 109 174 145 123 123 160 1 1 1 1 1 1 55179 19179 533 18954 29475 38079 38079 1 VGFLKPVGPK Unmodified 1040.6383 0.6382516 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 1 9 0 1 51.995 51.995 3 0.017539 12665 TMT1-8 55.567 27.825 138.97 150 140.99 139.14 175.13 227.39 131 152 145 138 181 218 1 1 1 1 1 1 15975 19180 126 18955 29476 38080 38080 1 VGFLPSAGK Unmodified 874.49125 0.49125301 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 9 0 1 54.97 54.97 2 0.0013535 13703 TMT1-8 124.98 59.731 177.21 203.48 160.76 153.44 165.6 272.43 167 205 167 152 174 260 1 1 1 1 1 1 19136 19181 692 18956 29477 38081 38081 1 VGFQYEGTYK Unmodified 1190.5608 0.56078914 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 6 0 1 52.063 52.063 2 3.6215E-19 14964 TMT1-5 160.36 111 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19182 655 18957 29478 38082 38082 1 VGFVTYNK Unmodified 926.48617 0.48616764 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 9 0 1 51.644 51.644 2 0.0044452 12442 TMT1-8 94.302 56.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19183 1293 18958 29479 38083 38083 1 VGFYVNTFQSIAGLEENFHK Unmodified 2299.1273 0.12733236 76 O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN1 Myc box-dependent-interacting protein 1 yes no 0 0 0 0 0 8 0 1 80.073 80.073 4 0.00021401 25366 TMT1-7 61.102 46.489 53.92 104.11 46.712 43.816 79.329 68.092 51 102 51 44 80 66 2 2 2 2 2 2 7909.1 19184 76 18959 29480 38084;38085 38084 2 VGGGWMALDEFLVK Unmodified 1520.7697 0.76973606 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;Q03001-8;Q03001-14;Q03001 MACF1;DST Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin yes no 0 0 0 0 0 8 0 1 85.853 85.853 3 1.7446E-05 27548 TMT1-7 95.018 84.822 23.335 28.932 20.958 22.28 27.47 53.582 22 29 22 22 29 51 1 1 1 1 1 1 2290 19185 2935 18960 29481 38086 38086 1 VGGIYTVLQTK Unmodified 1177.6707 0.67067394 694 P13807-2;P13807 GYS1 Glycogen [starch] synthase, muscle yes no 0 0 0 0 0 9 0 1 63.123 63.123 3 8.2047E-07 16966 TMT1-8 116.52 0 68.58 140.93 76.294 32.876 102.35 82.359 65 138 80 36 102 80 1 1 1 1 1 1 9554.4 19186 694 18961 29482 38087 38087 1 VGGSGVNVNAK Unmodified 1000.5302 0.53015772 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6.5 0.5 1 1 38.882 38.882 3 0.0001599 9316 TMT1-6 72.096 41.525 107.8 168.18 133.87 108.06 164.57 149.87 102 167 138 109 167 145 1 1 1 1 1 1 8842.9 19187 1632 18962 29483;29484 38088;38089 38089 2 VGGSSVDLHR Unmodified 1025.5254 0.52540669 234 O60716-24;O60716-23;O60716-2;O60716-4;O60716-6;O60716-3;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-17;O60716-15;O60716-18;O60716-16;O60716-20;O60716-22;O60716-19;O60716-21;O60716 CTNND1 Catenin delta-1 yes no 0 0 0 0 0 4 0 1 31.394 31.394 3 0.0015907 6900 TMT1-3 57.532 26.968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19188 234 18963 29485 38090 38090 1 VGGTSDVEVNEK Unmodified 1232.5885 0.58846046 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 3 0.816 1 1 1 41.525 41.525 3 8.3093E-11 11648 TMT1-1 158.05 114.42 619.19 951.15 624.87 628.1 654.76 897.01 585 943 659 620 683 859 4 4 4 4 4 4 150680 19189 638 18964 29486;29487;29488 38091;38092;38093;38094 38091 4 VGGYILGEFGNLIAGDPR Unmodified 1846.9577 0.95774784 369;335 O94973-2;O94973;O94973-3;O95782-2;O95782 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 0 0 0 0 0 7.5 0.5 1 1 86.195 86.195 3 6.0687E-07 27724 TMT1-6 91.065 62.768 53.822 114.74 111.21 87.54 107.15 113.14 51 113 113 88 110 109 3 4 4 4 4 4 26672 19190 335;369 18965 29489;29490 38095;38096;38097;38098 38095 4 VGHDYQWIGLNDK Unmodified 1543.7419 0.74194141 684 P13611-4;P13611-3;P13611-2;P13611-5;P13611 VCAN Versican core protein yes no 0 0 0 0 0 6 0 1 54.474 54.474 3 0.00068917 15913 TMT1-5 58.487 38.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19191 684 18966 29491 38099 38099 1 VGHSELVGEIIR Unmodified 1307.7197 0.7197494 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 5 0 1 48.014 48.014 3 7.5394E-15 13196 TMT1-4 178.49 137.2 108.11 145.3 101.28 166.1 145.65 166.4 102 145 109 160 152 160 1 1 1 1 1 1 63012 19192 1057 18967 29492 38100 38100 1 VGIADGHR Unmodified 823.43005 0.43004974 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 4 0 1 26.591 26.591 3 0.0048932 5010 TMT1-3 85.212 41.404 54.305 42.584 34.112 45.144 48.647 76.43 51 44 36 44 51 73 1 1 1 1 1 1 8626.6 19193 1559 18968 29493 38101 38101 1 VGIDTPDIDIHGPEGK Unmodified 1661.8261 0.82606496 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 55.991 55.991 4 5.8034E-07 16652 TMT1-3 99.069 86.277 99.361 145.42 129.06 77.477 120.71 127.67 94 145 131 80 123 123 1 1 1 1 1 1 14306 19194 1632 18969 29494 38102 38102 1 VGIGAFPTEQDNEIGELLQTR Unmodified 2286.1492 0.14919002 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 5 0 1 77.563 77.563 3 3.208E-06 24799 TMT1-4 77.221 60.922 23.3 36.39 20.51 22.292 28.276 30.107 22 36 22 22 29 29 1 1 1 1 1 1 13032 19195 962 18970 29495 38103 38103 1 VGILDVDLCGPSIPR Unmodified 1609.8498 0.84977729 3039 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 0 0 0 6 0 1 72.34 72.34 3 0.02723 22952 TMT1-5 44.294 31.094 38.147 43.509 43.932 19.604 96.954 44.137 36 44 44 22 95 44 1 1 1 1 1 1 2980.3 19196 3039 18971 29496 38104 38104 1 VGINYQPPTVVPGGDLAK Unmodified 1823.9781 0.97814893 1491;2068;1492;2510;622;2783 P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;Q9NY65;Q9NY65-2 TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain no no 0 0 0 0 0 6.12 2.03 1 2 4 1 64.605 64.605 3;4 4.1449E-19 19243 TMT1-6 129.88 107.66 3920.6 4864.3 4190.4 3258.7 3898.3 5331.8 3700 4886 4295 3277 4045 5106 14 14 14 14 14 14 1507000 19197 622;1491;2068;2510;1492;2783 18972 29497;29498;29499;29500;29501;29502;29503;29504 38105;38106;38107;38108;38109;38110;38111;38112;38113;38114;38115;38116;38117;38118;38119 38113 15 VGIVAWHPTAR Unmodified 1205.6669 0.66692597 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 9 0 1 46.484 46.484 3 0.00062298 10453 TMT1-8 81.625 59.597 253.09 350.88 266.25 201.49 298.64 324.07 239 350 275 204 305 312 2 2 2 2 2 2 64619 19198 2913 18973 29505 38120;38121 38121 2 VGKETVQTTEDQILK Unmodified 1687.8992 0.89922991 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 1 5.5 0.5 1 1 52.258 52.258 3 9.3469E-15 14955 TMT1-4 134.44 69.793 994.09 1239.5 1210.6 844.37 898.54 1428.4 939 1247 1227 854 943 1364 3 3 3 3 3 3 128720 19199 776 18974 29506;29507 38122;38123;38124 38122 3 VGLGFELEA Unmodified 933.48075 0.48074791 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 4.5 0.5 1 1 76.421 76.421 2 0.013732 24365 TMT1-4 83.801 77.762 68.474 156.82 80.782 80.762 99.089 113.37 65 153 87 80 102 109 2 2 2 2 2 2 41515 19200 2959 18975 29508;29509 38125;38126 38126 2 VGLGLGYLELPQINYK Unmodified 1775.9822 0.98217168 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 9 0 1 81.534 81.534 3 1.0715E-16 24137 TMT1-8 123.28 100.04 84.699 101.04 106.1 120.05 79.964 160.82 80 102 109 117 87 153 2 2 2 2 2 2 27010 19201 1666 18976 29510 38127;38128 38127 2 VGLNLLYAQTVSDIER Unmodified 1789.9574 0.95741349 1817 Q15036-2;Q15036 SNX17 Sorting nexin-17 yes no 0 0 0 0 0 7 0 1 75.608 75.608 3 0.03824 23629 TMT1-6 38.889 23.623 23.12 35.887 51.325 35.641 34.442 45.921 22 36 51 36 36 44 1 1 1 1 1 1 4264.8 19202 1817 18977 29511 38129 38129 1 VGLPIGFSLPDCLQVVR Unmodified 1869.0182 0.018239607 2792 Q9NZ09-2;Q9NZ09;Q9NZ09-4 UBAP1 Ubiquitin-associated protein 1 yes no 0 0 0 0 0 9 0 1 83.23 83.23 3 0.0033244 24834 TMT1-8 50.534 32.669 38.164 51.11 34.744 21.315 35.1 45.902 36 51 36 22 36 44 1 1 1 1 1 1 4474.3 19203 2792 18978 29512 38130 38130 1 VGLPLLSPEFLLTGVLK Unmodified 1795.0859 0.085908466 1788 Q14676-4;Q14676-3;Q14676-2;Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 0 9 0 1 99.892 99.892 3 0.0039099 31030 TMT1-8 48.823 38.902 15.731 29.185 36.5 13.951 14.258 23.045 15 29 36 15 15 22 1 1 1 1 1 1 2241.8 19204 1788 18979 29513 38131 38131 1 VGLPPLEK Unmodified 851.51165 0.5116541 1312 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 0 7 0 1 56.557 56.557 2 0.010962 16098 TMT1-6 98.523 39.542 659.25 893.3 614.51 569.74 536.46 886.53 622 891 644 564 567 846 1 1 1 1 1 1 69628 19205 1312 18980 29514 38132 38132 1 VGLQVVAVK Unmodified 911.5804 0.58040237 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 55.863 55.863 2 1.4134E-06 14015 TMT1-8 166.96 106 732.66 1113.5 893.73 749.04 927.68 951.05 693 1107 922 750 951 917 4 4 4 4 4 4 173340 19206 638 18981 29515;29516 38133;38134;38135;38136 38135 4 VGLSDAFVVVHR Unmodified 1297.7143 0.71427009 2048 Q6UX71-2;Q6UX71 PLXDC2 Plexin domain-containing protein 2 yes no 0 0 0 0 0 7 0 1 55.547 55.547 3 9.1021E-05 15694 TMT1-6 99.276 96.347 92.492 77.57 78.554 64.786 83.861 121.26 87 80 80 65 87 116 1 1 1 1 1 1 16583 19207 2048 18982 29517 38137 38137 1 VGLSTFK Unmodified 750.42759 0.42759012 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 9 0 1 51.984 51.984 2 0.040624 12538 TMT1-8 84.097 31.866 138.73 180.65 154.34 162.67 159.93 211.83 131 181 160 160 167 203 1 1 1 1 1 1 31951 19208 1960 18983 29518 38138 38138 1 VGLSTPPPPAYESIIK Unmodified 1667.9134 0.91342341 2188 Q8N699 MYCT1 Myc target protein 1 yes yes 0 0 0 0 0 7 0 1 65.338 65.338 3 0.00066128 19607 TMT1-6 68.173 46.3 99.296 161.43 126.34 117.06 116.77 189.61 94 160 131 116 123 181 1 1 1 1 1 1 11883 19209 2188 18984 29519 38139 38139 1 VGLTNYAAAYCTGLLLAR Unmodified 1926.0033 0.003317824 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 0 9 0 1 73.728 73.728 3 2.2501E-27 21122 TMT1-8 145.62 118.41 53.882 104 53.281 66.529 71.248 59.795 51 102 58 65 73 58 1 1 1 1 1 1 26340 19210 1132 18985 29520 38140 38140 1 VGMIPVPYVEK Oxidation (M) 1246.6631 0.66314572 1127 P46109 CRKL Crk-like protein yes yes 0 0 1 0 0 8 0 1 61.789 61.789 3 0.010489 18243 TMT1-7 72.006 48.63 37.697 112.41 61.134 50.761 71.167 83.249 36 109 65 51 73 80 1 1 1 1 1 1 6492.9 19211 1127 18986 29521 38141 38141 204 1 VGMIPVPYVEK Unmodified 1230.6682 0.6682311 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 8 0 1 67.5 67.5 3 0.0033398 20480 TMT1-7 73.781 43.974 138.93 194.15 109.7 77.662 172.24 180.57 131 193 116 80 174 174 1 1 1 1 1 1 33747 19212 1127 18986 29522 38142 38142 1 VGNIEIK Unmodified 771.44905 0.44905385 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 3.5 2.5 1 1 49.491 49.491 2 0.0097947 13731 TMT1-5 110.81 51.826 1686.5 2341.8 1667 1545 1894.3 1954.3 1592 2334 1742 1537 1943 1884 2 2 2 2 2 2 536900 19213 1380 18987 29523;29524 38143;38144 38144 2 VGNIEIKDLMVGDEASELR Unmodified 2087.0569 0.056869537 1380 P61160 ACTR2 Actin-related protein 2 yes yes 0 0 0 0 1 5 0 1 67.916 67.916 3 2.3714E-06 21005 TMT1-4 81.357 67.165 92.457 123.88 45.301 44.496 47.614 107.37 87 123 51 44 51 102 1 1 1 1 1 1 15301 19214 1380 18988 29525 38145 38145 1 VGNIIDTMITDAFLK Unmodified 1649.8698 0.86984403 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 8 0 3 98.263 98.263 2;3;4 2.6499E-14 32158 TMT1-7 134.56 98.037 93.529 94.664 70.185 59.473 86.179 91.349 88 96 73 59 88 88 4 4 4 3 4 4 25561 19215 3006 18989 29526;29527;29528 38146;38147;38148;38149 38147 4 VGNLGLATSFFNER Unmodified 1523.7732 0.77324153 82 O00571-2;O00571 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 0 9 0 1 71.212 71.212 2 0.0042252 20172 TMT1-8 64.534 33.155 30.556 51.356 50.705 27.863 43.176 45.672 29 51 51 29 44 44 1 1 1 1 1 1 5541.6 19216 82 18990 29529 38150 38150 1 VGNQIFQSR Unmodified 1047.5461 0.54614213 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-4 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 7 0 1 44.32 44.32 2 0.0011563 11272 TMT1-6 123.5 86.528 99.536 138.35 105.6 79.286 98.9 120.83 94 138 109 80 102 116 1 1 1 1 1 1 10341 19217 3 18991 29530 38151 38151 1 VGPEADK Unmodified 714.35482 0.35481911 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 4 0 1 34.601 34.601 2 0.020741 8140 TMT1-3 97.033 46.067 366.2 331.63 389.05 396.87 504.65 338.45 345 341 396 393 511 331 1 1 1 1 1 1 55357 19218 439 18992 29531 38152 38152 1 VGPEADKYR Unmodified 1033.5193 0.51925868 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 1 4 2.16 1 1 1 34.37 34.37 3 0.00047571 7908 TMT1-5 120.45 104.2 9785.3 13224 10145 8604.8 10005 15601 9238 13208 10509 8598 10455 14903 5 5 5 5 5 5 1184700 19219 439 18993 29532;29533;29534 38153;38154;38155;38156;38157 38157 5 VGPLLACIIGTQFR Unmodified 1543.8545 0.85446874 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 9 0 2 84.795 84.795 2;3 9.0043E-10 25393 TMT1-8 119.34 89.561 109.24 123.8 109.85 196.78 114.66 174.75 103 125 117 188 124 167 4 4 4 4 4 4 28644 19220 489 18994 29535;29536 38158;38159;38160;38161 38159 4 VGPLVAGR Unmodified 767.46537 0.46537261 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 8 0 1 41.638 41.638 2 0.00075596 10327 TMT1-7 148.37 79.133 677.84 893.39 915.83 822.98 935.86 887.92 641 897 933 819 960 858 2 2 2 2 2 2 132770 19221 535 18995 29537 38162;38163 38163 2 VGQALELPLR Unmodified 1094.6448 0.64479354 2259 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 0 6 0 1 59.663 59.663 2 0.044089 17917 TMT1-5 65.535 41.742 84.979 78.077 78.555 64.914 77.039 106.53 80 80 80 65 80 102 1 1 1 1 1 1 7773.4 19222 2259 18996 29538 38164 38164 1 VGQAVDVVGQAGKPK Unmodified 1451.8096 0.80962704 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 1 7 0 1 47.539 47.539 3 6.9423E-08 12517 TMT1-6 113.65 88.532 130.2 205.13 124.33 99.949 219.4 117.4 123 203 131 102 218 116 1 1 1 1 1 1 14715 19223 1683 18997 29539 38165 38165 1 VGQDPVLR Unmodified 882.49232 0.49231565 1587 Q04837 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 0 0 0 0 0 4 0 1 39.36 39.36 2 0.0060952 10033 TMT1-3 109.86 50.657 199.95 281.49 240.2 156.93 193.32 252.46 189 281 245 160 200 242 1 1 1 1 1 1 56167 19224 1587 18998 29540 38166 38166 1 VGQEIEVRPGIVSK Unmodified 1509.8515 0.85149185 1077 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 0 1 6 0 2 48.888 48.888 3;4 2.6474E-05 13693 TMT1-5 92.38 60.95 443.53 624.81 487.91 421.4 456.4 644.7 419 623 505 420 476 617 2 2 2 2 2 2 43125 19225 1077 18999 29541;29542 38167;38168 38167 2 VGQISFDLPR Unmodified 1130.6084 0.60840804 3020 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 0 7 0 1 62.004 62.004 2 0.00031429 18251 TMT1-6 123.6 59.923 68.703 117.53 75.532 81.484 77.34 75.611 65 116 80 80 80 73 1 1 1 1 1 1 11670 19226 3020 19000 29543 38169 38169 1 VGQTAFDVADEDILGYLEELQK Unmodified 2452.201 0.20095082 118 O14974-4;O14974;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 5.33 0.471 2 1 98.521 98.521 3;4 2.409E-06 32659 TMT1-4 72.316 52.06 21.126 29.981 30.763 19.616 28.809 28.16 20 30 31 20 29 27 2 2 2 2 2 2 4422 19227 118 19001 29544;29545;29546 38170;38171;38172 38171 3 VGQYVVDLTSFEQLALPVLR Unmodified 2246.2311 0.23106915 2522 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 0 0 8 0 2 98.267 98.267 3 1.3475E-05 32075 TMT1-7 74.953 65.373 15.934 14.641 14.647 14.018 21.84 15.367 15 15 15 14 22 15 1 1 1 1 1 1 1482.4 19228 2522 19002 29547;29548 38173;38174 38173 2 VGSAADIPINISETDLSLLTATVVPPSGR Unmodified 2892.5444 0.54441738 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.86 2.1 1 3 2 1 91.689 91.689 3;4;5 8.3306E-46 30245 TMT1-5 145.34 132.02 770.67 985.95 923.99 647.91 803.87 960.98 728 990 938 657 828 923 15 15 14 14 14 15 860850 19229 831 19003 29549;29550;29551;29552;29553;29554;29555 38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186;38187;38188;38189;38190 38178 16 VGSAADIPINISETDLSLLTATVVPPSGREEPCLLK Unmodified 3761.9761 0.97610661 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6.5 0.5 1 1 88.04 88.04 5 3.1076E-11 28373 TMT1-6 75.248 64.919 269.54 302.2 247.67 196.51 215.33 320.05 254 305 255 197 225 306 4 4 4 4 4 4 57114 19230 831 19004 29556;29557 38191;38192;38193;38194 38194 4 VGSAKPGLQK Unmodified 983.57638 0.57637963 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 1 9 0 1 38.674 38.674 3 0.0018333 7619 TMT1-8 82.494 38.177 1279.2 1221 1105.9 929.58 1116.6 1026.7 1204 1246 1134 930 1142 993 2 2 2 2 2 2 95053 19231 406 19005 29558 38195;38196 38195 2 VGSAMVNAK Unmodified 875.45349 0.4534873 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 7 0.816 1 1 1 41.818 41.818 2;3 0.00023952 10309 TMT1-7 144.12 61.117 976.71 1106.8 818.9 710.13 676.19 1107.5 920 1115 852 706 714 1057 5 5 5 5 5 5 136220 19232 393 19006 29559;29560;29561 38197;38198;38199;38200;38201 38200 5 VGSAMVNAK Oxidation (M) 891.4484 0.44840192 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 1 0 0 7 0 1 35.581 35.581 3 0.040931 7767 TMT1-6 61.679 51.155 61.538 63.96 62.84 75.017 54.603 76.26 58 65 65 73 58 73 1 1 1 1 1 1 6241 19233 393 19006 29562 38202 38202 41 1 VGSHITGGDIYGIVSENSLIK Unmodified 2158.127 0.12699801 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 7.5 0.5 1 1 66.163 66.163 4 7.6656E-14 19909 TMT1-6 105.5 88.221 115.78 137.68 80.672 127.96 89.04 129.64 109 138 88 123 95 124 2 2 2 2 2 2 19201 19234 1057 19007 29563;29564 38203;38204 38203 2 VGSTSENITQK Unmodified 1162.583 0.58298115 82 O00571-2;O00571;O15523-2;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 0 5 0 1 39.34 39.34 2 0.00052263 9810 TMT1-4 103.08 88.393 23.258 36.271 27.77 29.516 27.944 30.117 22 36 29 29 29 29 1 1 1 1 1 1 5784 19235 82 19008 29565 38205 38205 1 VGSVLQEGCGK Unmodified 1132.5547 0.55465791 970 P31040;P31040-2;P31040-3 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 6 0 1 47.075 47.075 3 0.00031572 12969 TMT1-5 97.163 73.073 153.47 190.71 193.17 150.18 236.33 196.86 145 192 196 152 239 191 1 1 1 1 1 1 17478 19236 970 19009 29566 38206 38206 1 VGTECGNQK Unmodified 991.43929 0.4392938 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.25 1.48 1 1 1 1 30.196 30.196 2;3 6.627E-05 6564 TMT 1-phospho 99.136 79.893 738.71 318.71 550.06 376.85 535.86 278.93 693 355 545 384 538 276 3 3 3 3 3 3 50095 19237 831 19010 29567;29568;29569;29570 38207;38208;38209;38210 38207 4 VGTGEPCCDWVGDEGAGHFVK Unmodified 2275.9627 0.96265158 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 4.67 0.471 1 2 55.448 55.448 3;4 5.6984E-24 16465 TMT1-3 133.16 111.96 308.06 457 316.23 363.29 428.67 433.36 291 454 334 357 440 418 4 4 4 4 4 4 63665 19238 1260 19011 29571;29572;29573 38211;38212;38213;38214 38211 4 VGTLCHK Unmodified 813.41671 0.41670786 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 8 0 1 33.109 33.109 3 0.026239 7019 TMT1-7 62.717 47.942 61.403 79.776 72 42.435 72.613 52.294 58 80 73 44 73 51 1 1 1 1 1 1 10046 19239 1081 19012 29574 38215 38215 1 VGTLDVLVGLSDELAK Unmodified 1627.9033 0.90325265 829 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 0 0 0 0 6 0 1 88.059 88.059 3 8.5964E-08 29029 TMT1-5 103.88 82.624 77.303 101.87 86.185 56.781 78.513 74.512 73 102 88 58 80 72 2 2 2 2 2 2 7634 19240 829 19013 29575 38216;38217 38216 2 VGTQVEEAAEGVLR Unmodified 1456.7522 0.75217174 2520 Q9BRZ2-2;Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 yes no 0 0 0 0 0 3 0 1 61.848 61.848 3 0.00095189 19911 TMT1-2 72.175 50.711 23.37 21.474 21.401 22.367 21.456 15.378 22 22 22 22 22 15 1 1 1 1 1 1 2712.9 19241 2520 19014 29576 38218 38218 1 VGTYQLAIVAK Unmodified 1161.6758 0.67575932 2546 Q9BV20-2;Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 0 8 0 1 60.736 60.736 3 0.0043207 17828 TMT1-7 70.488 42.32 46.512 64.979 62.52 82.545 62.136 60.055 44 65 65 80 65 58 1 1 1 1 1 1 4892.4 19242 2546 19015 29577 38219 38219 1 VGVASSEELAR Unmodified 1116.5775 0.57750184 366 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 0 0 0 3 0 1 41.097 41.097 2 1.3347E-06 11714 TMT1-2 140.17 83.51 61.542 72.607 54.732 75.372 61.403 90.99 58 73 58 73 65 87 1 1 1 1 1 1 14691 19243 366 19016 29578 38220 38220 1 VGVDPLIIPTDYWK Unmodified 1614.8657 0.86574494 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 80.616 80.616 3 1.7541E-07 25585 TMT1-6 109.22 77.831 106.75 113.27 176.92 90.101 111.49 166.31 101 116 174 94 116 159 2 2 2 2 2 2 26523 19244 2717 19017 29579 38221;38222 38222 2 VGVEVPDVNIEGPEGK Unmodified 1636.8308 0.83081599 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 63.071 63.071 3 9.2131E-09 19418 TMT1-3 110.38 101.22 184.59 261.98 132.25 179.31 158.69 225.73 174 260 145 174 167 216 1 1 1 1 1 1 39871 19245 1632 19018 29580 38223 38223 1 VGVGTSFGLPQTR Unmodified 1317.7041 0.70409934 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8.5 0.5 1 1 55.658 55.658 2 1.32E-08 13967 TMT1-8 112.94 77.426 139.12 135.31 128.05 85.048 128.21 112.54 131 138 130 87 130 109 2 2 2 2 2 2 22236 19246 1229 19019 29581;29582 38224;38225 38225 2 VGVKPVGSDPDFQPELSGAGSR Unmodified 2198.0968 0.096760517 171 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 1 6 0 1 53.193 53.193 3 2.9709E-12 15407 TMT1-5 92.878 82.955 115.32 167.69 132.81 131.65 192.53 187.45 109 167 138 131 196 181 1 1 1 1 1 1 28579 19247 171 19020 29583 38226 38226 1 VGVPTIQQLLEWSFINSNLK Unmodified 2285.242 0.24196819 2710 Q9NQC7-2;Q9NQC7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD yes no 0 0 0 0 0 9 0 1 98.942 98.942 3 1.6275E-05 30623 TMT1-8 60.938 49.418 0 15.709 14.986 6.7578 0 7.462 0 15 15 7 0 7 0 1 1 1 0 1 1758.3 19248 2710 19021 29584 38227 38227 1 VGWEQLLTTIAR Unmodified 1385.7667 0.76669959 672;195 P12814;P12814-3;P12814-2;P12814-4;O43707;O43707-2;O43707-3 ACTN1;ACTN4 Alpha-actinin-1;Alpha-actinin-4 no no 0 0 0 0 0 5 4 1 1 81.005 81.005 2 1.4437E-23 23792 TMT1-8 196.88 137.28 3293.3 4770.3 4389.1 3102 3756.8 4787.9 3116 4761 4464 3142 3885 4592 5 5 5 5 5 5 1138000 19249 672;195 19022 29585;29586 38228;38229;38230;38231;38232 38230 5 VGWFPANYVEEDYSEYC Unmodified 2126.8568 0.85677275 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 5 0 1 86.528 86.528 3 0.0394 28337 TMT1-4 37.366 32.262 69.104 79.789 40.148 52.18 62.213 98.429 65 80 44 51 65 94 1 1 1 1 1 1 4333.3 19250 722 19023 29587 38233 38233 1 VGWIFTDLVSEDTR Unmodified 1636.8097 0.80968662 2238 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 0 7 0 1 83.999 83.999 3 5.6893E-06 26878 TMT1-6 101.43 74.282 54.246 42.419 44.201 13.211 29.207 15.157 51 44 44 15 29 15 1 1 1 1 1 1 6004.8 19251 2238 19024 29588 38234 38234 1 VGWSVDFSRPQLGEDEFSYGFDGR Unmodified 2749.2409 0.24085857 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 1 6 0 2 73.436 73.436 3;4 5.4496E-23 23363 TMT1-5 120.08 113.36 84.631 132.15 91.191 72.799 82.687 144.75 80 131 95 73 87 138 2 2 2 2 2 2 26380 19252 1915 19025 29589;29590 38235;38236 38236 2 VGYTPDVLTDTTAELAVSLLLTTCR Unmodified 2708.3942 0.39424767 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 8 0 1 105.04 105.04 3 1.5079E-06 33601 TMT1-7 66.3 66.3 2.1332 0 2.1532 0 2.0208 2.0743 2 0 2 0 2 2 1 0 1 0 1 1 810.36 19253 2843 19026 29591 38237 38237 1 VGYTPDWIFLLR Unmodified 1478.7922 0.79218606 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 9 0 2 84.841 84.841 2;3 4.4779E-07 25492 TMT1-8 123.96 96.909 84.7 108.6 99.49 88.25 106.59 98.229 80 109 102 88 109 95 2 2 2 2 2 2 37977 19254 1540 19027 29592;29593 38238;38239 38239 2 VGYVSGWGR Unmodified 979.48756 0.48756462 400 P00738-2;P00738 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes no 0 0 0 0 0 8 0 1 49.636 49.636 2 0.022384 13468 TMT1-7 77.072 53.515 122.67 190.48 140.39 100.07 162.15 230.96 116 189 145 102 167 221 1 1 1 1 1 1 13704 19255 400 19028 29594 38240 38240 1 VHAELADVLTEAVVDSILAIK Unmodified 2205.2256 0.22564942 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 7.67 0.471 1 2 104.22 104.22 3;4 1.3111E-18 33504 TMT1-7 126.19 109.7 137.65 183.93 153.31 136.24 174.15 198.64 130 184 157 136 179 191 11 11 10 11 11 11 17934 19256 1068 19029 29595;29596;29597 38241;38242;38243;38244;38245;38246;38247;38248;38249;38250;38251 38248 11 VHAIPLR Unmodified 804.49701 0.49700709 1454;1453 P62879;P62873;P62873-2;P16520-2;P16520 GNB2;GNB1;GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 no no 0 0 0 0 0 8 0 1 34.532 34.532 2 0.036336 7503 TMT1-7 87.839 60.523 130.67 136.27 104.55 102.26 159.36 126.57 123 138 109 102 161 123 1 1 1 1 1 1 9418.3 19257 1454;1453 19030 29598 38252 38252 1 VHAPGLNLSGVGGK Unmodified 1304.7201 0.72008375 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 8 0 1 48.619 48.619 3 2.1788E-05 13054 TMT1-7 92.65 65.346 259.55 495.31 320.27 250.81 352.63 452.58 246 487 335 253 363 434 1 1 1 1 1 1 26467 19258 1632 19031 29599 38253 38253 1 VHAPWEVLCTYAEIMHIK Unmodified 2196.086 0.086001596 1941 Q4KMQ2-3;Q4KMQ2;Q4KMQ2-4;Q4KMQ2-2 ANO6 Anoctamin-6 yes no 0 0 0 0 0 9 0 1 76.835 76.835 4 0.01392 22371 TMT1-8 40.962 20.337 30.674 35.493 44.4 20.734 35.42 37.365 29 36 44 22 36 36 1 1 1 1 1 1 4914.8 19259 1941 19032 29600 38254 38254 1 VHAYIISSLKK Unmodified 1257.7445 0.74450759 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 1 9 0 1 48.415 48.415 4 0.0061348 11127 TMT1-8 58.37 33.516 236.56 226.46 265.38 268.96 142.57 605.68 223 232 270 263 168 572 1 1 1 1 1 1 18530 19260 2654;2802 19033 29601 38255 38255 1 VHCCLYFISPFGR Unmodified 1654.7748 0.77483821 2288 Q8WYJ6;Q8WYJ6-2 SEPT1 Septin-1 yes no 0 0 0 0 0 9 0 1 61.744 61.744 3 0.0081184 16425 TMT1-8 53.252 22.921 46.665 50.293 49.289 59.272 62.949 67.494 44 51 51 58 65 65 1 1 1 1 1 1 5857.7 19261 2288 19034 29602 38256 38256 1 VHCGVLGLR Unmodified 1009.5491 0.54911902 166 O43306-2;O43306;O95622-2;O95622 ADCY6;ADCY5 Adenylate cyclase type 6;Adenylate cyclase type 5 yes no 0 0 0 0 0 8 0 1 39.233 39.233 3 0.0017358 9325 TMT1-7 90.37 65.851 53.887 80.276 72.416 33.26 94.216 75.13 51 80 73 36 94 73 1 1 1 1 1 1 4646.8 19262 166 19035 29603 38257 38257 1 VHDAWLSK Unmodified 954.49232 0.49231565 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 7 0 1 44.505 44.505 3 0.025236 11335 TMT1-6 58.981 36.833 91.807 145.82 136 92.221 128.41 127.45 87 145 138 94 131 123 1 1 1 1 1 1 8162.6 19263 1961 19036 29604 38258 38258 1 VHDLALR Unmodified 822.47119 0.47118627 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 0 5 0 1 35.417 35.417 3 0.0016867 8226 TMT1-4 115.46 60.672 77.619 86.567 45.894 83.114 84.594 75.404 73 87 51 80 87 73 1 1 1 1 1 1 10095 19264 2414 19037 29605 38259 38259 1 VHELNEEIGK Unmodified 1166.5932 0.5931519 2414 Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383;Q9NQ29-2;Q9NQ29-3;Q9NQ29 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 0 4 0 1 41.789 41.789 3 0.00016562 11015 TMT1-3 104.79 70.834 216.58 374.87 251.31 265.68 303.61 367.63 205 370 265 262 314 353 1 1 1 1 1 1 48135 19265 2414 19038 29606 38260 38260 1 VHFALLGTWDEK Unmodified 1414.7245 0.72450043 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 8 0 1 65.135 65.135 3 0.0001554 19547 TMT1-7 94.767 65.439 77.028 132.41 106.4 71.856 84.599 90.328 73 131 109 73 87 87 1 1 1 1 1 1 12683 19266 839 19039 29607 38261 38261 1 VHFEESSK Unmodified 961.45051 0.45051041 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 0 4 0 1 34.91 34.91 3 0.012673 8307 TMT1-3 70.256 54.002 46.45 57.249 79.625 73.311 92.118 82.651 44 58 80 73 94 80 1 1 1 1 1 1 4600.5 19267 675 19040 29608 38262 38262 1 VHFEESSKLEDLLR Unmodified 1700.8733 0.87334951 675 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 1 6 0 1 58.726 58.726 4 3.0324E-10 17568 TMT1-5 120.53 100.15 138.77 194.78 136.23 185.64 216.32 214.49 131 194 145 181 222 207 1 1 1 1 1 1 16982 19268 675 19041 29609 38263 38263 1 VHGPGIQSGTTNKPNK Unmodified 1633.8536 0.85361712 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 7 3.03 1 2 2 33.356 33.356 4;5 5.5369E-20 7520 TMT 1-phospho 159.02 131.16 3837.6 4524.2 5264.8 3628.7 4589.6 4960.2 3627 4578 5284 3686 4710 4776 10 10 10 10 10 10 812930 19269 831 19042 29610;29611;29612;29613;29614 38264;38265;38266;38267;38268;38269;38270;38271;38272;38273 38264 10 VHGPGIQSGTTNKPNKFTVETR Unmodified 2367.2295 0.22950602 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 2 9 0 1 39.456 39.456 5 8.3545E-33 7940 TMT1-8 135.91 109.77 532.14 601.09 403.72 390.14 293.09 873.22 501 605 425 384 326 827 1 1 1 1 1 1 47452 19270 831 19043 29615 38274 38274 1 VHHEPQLSDK Unmodified 1188.5887 0.58873523 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-6;O43852-13;O43852-14;O43852-11;O43852-8;O43852-10;O43852-12;O43852-7 CALU Calumenin yes no 0 0 0 0 0 4.5 0.5 1 1 28.48 28.48 4 0.0077739 5893 TMT1-3 64.297 56.193 260.31 302.07 356.75 250.71 300.46 327.22 246 306 358 254 309 315 3 3 3 3 3 3 20914 19271 209 19044 29616;29617 38275;38276;38277 38276 3 VHIDIGADGR Unmodified 1051.5411 0.54105675 982 P31942-2;P31942;P31942-3;P31942-6;P31942-5;P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 0 4 0 1 40.614 40.614 3 1.9375E-05 10644 TMT1-3 139.43 88.374 114.92 221.63 153.72 99.67 141.12 174 109 218 159 102 145 167 2 2 2 2 2 2 25407 19272 982 19045 29618 38278;38279 38279 2 VHIEIGPDGR Unmodified 1091.5724 0.57235688 983;1271;1325 P31943;P52597;P55795 HNRNPH1;HNRNPF;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 0 4 0 1 41.4 41.4 3 7.4216E-06 10903 TMT1-3 148.56 103.58 297.55 448.64 285.88 328.51 340.3 494.51 281 445 304 322 356 473 2 2 2 2 2 2 202850 19273 983;1271;1325 19046 29619 38280;38281 38281 2 VHLDLWVK Unmodified 1008.5757 0.57565135 759 P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 0 8 0 1 59.393 59.393 3 0.0028869 17307 TMT1-7 93.374 52.492 91.735 193.11 107.88 125.36 141 143.08 87 189 116 123 145 138 1 1 1 1 1 1 8226.3 19274 759 19047 29620 38282 38282 1 VHLLNAHGLDEAGIDGGGIFR Unmodified 2160.1076 0.10759997 1848 Q15386 UBE3C Ubiquitin-protein ligase E3C yes yes 0 0 0 0 0 6 0 1 59.517 59.517 4 0.00023781 17910 TMT1-5 57.009 40.87 54.01 56.872 71.642 82.139 54.825 60.264 51 58 73 80 58 58 1 1 1 1 1 1 9613 19275 1848 19048 29621 38283 38283 1 VHLPNGSPIPAVLLANK Unmodified 1739.0094 0.0093894799 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 8 0 1 68.257 68.257 4 0.028484 20818 TMT1-7 38.116 24.436 60.815 116.99 139.28 60.863 100 113.34 58 116 138 65 102 109 1 1 1 1 1 1 19465 19276 1734 19049 29622 38284 38284 1 VHLQLWDTAGQER Unmodified 1551.7794 0.77938954 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 7 0 1 52.063 52.063 3 0.0082411 14347 TMT1-6 58.32 41.547 244.93 451.03 291.43 230.9 282.03 372.51 232 444 305 232 292 357 2 2 2 2 2 2 22146 19277 50 19050 29623 38285;38286 38285 2 VHLTPEEK Unmodified 951.50255 0.50254598 1497;428 P02042;P68871 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 0 5.33 2.49 1 1 1 1 1 1 36.647 36.647 3 0.00025471 8539 TMT1-4 143.01 81.048 6925.4 7608 5776.2 5256 2398.6 4114.5 6522 7680 6009 5165 2659 3924 12 12 12 12 12 12 1217200 19278 428;1497 19051 29624;29625;29626;29627;29628;29629 38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297;38298 38291 12 VHLVGIDIFTGK Unmodified 1297.7394 0.73942221 1477 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 0 8.5 0.5 1 1 66.471 66.471 3 9.5187E-10 18239 TMT1-8 142.08 116.04 933.06 1461.2 1181.6 1326.3 1402.5 1765.8 883 1451 1232 1302 1457 1694 3 3 3 3 3 3 313270 19279 1477 19052 29630;29631 38299;38300;38301 38300 3 VHLVGIDIFTGKK Unmodified 1425.8344 0.83438523 1477 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 1 9 0 1 60.216 60.216 4 0.0057686 15843 TMT1-8 53.967 40.061 138.98 158.67 131.41 172.54 114.66 176.88 131 160 138 167 123 169 1 1 1 1 1 1 23088 19280 1477 19053 29632 38302 38302 1 VHNDAQSFDYDHDAFLGAEEAK Unmodified 2478.0724 0.07239626 209 O43852;O43852-3;O43852-5;O43852-2;O43852-4;O43852-9;O43852-6;O43852-13;O43852-14;O43852-11;O43852-8;O43852-10;O43852-12;O43852-7 CALU Calumenin yes no 0 0 0 0 0 4 0 1 52.106 52.106 4 1.9244E-17 15106 TMT1-3 105.16 102.54 54.045 49.414 72.141 80.986 114.54 89.473 51 51 73 80 116 87 1 1 1 1 1 1 11864 19281 209 19054 29633 38303 38303 1 VHNVSFAFELMLDGGLK Unmodified 1875.9553 0.955305 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 9 0 1 76.848 76.848 3 0.0050179 22357 TMT1-8 48.677 30.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19282 2682 19055 29634 38304 38304 1 VHPAVVIR Unmodified 889.54977 0.54977095 1446 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 0 8 0 1 33.554 33.554 3 0.0051934 7087 TMT1-7 84.097 51.743 139.11 151.48 115.61 172.6 161.6 149.96 131 153 123 167 167 145 2 2 2 2 2 2 25564 19283 1446 19056 29635 38305;38306 38305 2 VHPVSTMIK Unmodified 1010.5583 0.55828672 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 8.5 0.5 1 1 40.582 40.582 3 0.0002701 9724 TMT1-7 120.12 85.732 1905.3 2476.3 2286.3 1961.6 2596.1 3103.7 1800 2484 2340 1964 2670 2981 2 2 2 2 2 2 212810 19284 385 19057 29636;29637 38307;38308 38307 2 VHQLDVAIPLHLK Unmodified 1481.8718 0.87183337 2673 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes yes 0 0 0 0 0 8 0 1 56.287 56.287 4 0.00032246 16111 TMT1-7 80.469 47.522 46.474 81.061 55.369 51.39 55.983 67.693 44 80 58 51 58 65 1 1 1 1 1 1 6245.9 19285 2673 19058 29638 38309 38309 1 VHQLYETIQR Unmodified 1285.6779 0.67788459 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 6 0 1 41.538 41.538 2 0.00040946 10804 TMT1-5 118.91 77.883 77.381 117.2 59.98 65.721 93.017 66.636 73 116 65 65 94 65 1 1 1 1 1 1 13102 19286 1720 19059 29639 38310 38310 1 VHQVLYR Unmodified 913.51339 0.51338544 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 0 7 0 1 31.805 31.805 3 0.010693 6394 TMT1-6 79.454 43.268 46.787 43.078 34.861 28.522 58.353 29.249 44 44 36 29 58 29 1 1 1 1 1 1 8789.8 19287 1904 19060 29640 38311 38311 1 VHQYFNVELIQPGAVK Unmodified 1840.9836 0.98356866 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 8 0 1 61.082 61.082 4 0.0027594 18013 TMT1-7 56.599 40.105 53.721 87.368 94.381 40.716 93.104 97.547 51 87 94 44 94 94 1 1 1 1 1 1 11157 19288 409 19061 29641 38312 38312 1 VHSEVASLQEK Unmodified 1225.6303 0.63026569 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 0 5 0 1 37.967 37.967 3 0.0052453 9251 TMT1-4 67.385 42.531 99.467 177.02 84.512 136.35 95.47 144.38 94 174 94 131 102 138 1 1 1 1 1 1 8728.7 19289 2980 19062 29642 38313 38313 1 VHSFPTLK Unmodified 927.5178 0.51780212 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 0 9 0 2 44.468 44.468 2;3 0.0010629 9683 TMT1-8 104.06 68.957 475.12 978.52 650.74 609.79 848.98 1022.6 451 960 683 608 872 982 2 2 2 2 2 2 166880 19290 530 19063 29643;29644 38314;38315;38316 38315 3 VHSPSGALEECYVTEIDQDK Unmodified 2276.0267 0.026691621 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.12 1.36 1 2 2 1 2 55.344 55.344 3;4;5 5.6149E-46 17462 TMT1-2 191.41 172.87 832.2 1151.5 1083.6 883.51 1137.8 1139.1 787 1152 1104 887 1164 1099 13 13 12 13 13 13 435560 19291 831 19064 29645;29646;29647;29648;29649;29650;29651;29652 38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329 38322 13 VHSPSGALEECYVTEIDQDKYAVR Unmodified 2765.2967 0.29665889 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4 1.67 1 2 1 1 55.525 55.525 4;5 2.1559E-56 16488 TMT1-3 186.06 164.21 1570.8 1901.9 1459.7 1339.2 1521.2 2157.9 1481 1910 1517 1331 1584 2065 9 9 9 9 9 9 861290 19292 831 19065 29653;29654;29655;29656;29657 38330;38331;38332;38333;38334;38335;38336;38337;38338 38333 9 VHTECCHGDLLECADDR Unmodified 2085.8303 0.83025719 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 2.5 0.5 1 1 36.415 36.415 3;4 2.3239E-26 9620 TMT1-1 155.26 141.83 68.904 64.123 87.022 65.493 77.562 90.529 65 66 87 66 80 87 2 2 2 2 2 2 18225 + 19293 28 19066 29658;29659 38339;38340 38339 2 VHTECCHGDLLECADDRADLAK Unmodified 2584.1105 0.1104548 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 1 3.33 0.471 2 1 43.384 43.384 4;5 2.1462E-126 12703 TMT1-2 259.49 245.81 1342.5 1947.4 1571 1087.6 1471 2374.6 1269 1940 1611 1106 1532 2267 5 5 5 5 5 5 287350 + 19294 28 19067 29660;29661;29662 38341;38342;38343;38344;38345 38343 5 VHTGEKPYK Unmodified 1057.5556 0.55564418 2060 Q6ZN19-3;Q6ZN19;Q8N8E2-3;Q76KX8;P52740;Q9UK10;Q14588;Q8N8Z8;Q02386;P17020;Q9H7R5;A6NK53;P0CJ79;Q08AG5;Q86YE8;P17035-2;Q76KX8-2;Q0VGE8;Q8N8Z8-2;Q86WZ6-2;Q9NZL3;Q14590;P17035;B7Z6K7;P17040-3;P59923;P17040-2;Q9UJU3;Q9UJU3-2;Q8NHY6;Q14586;Q9UJW7;Q7L2R6;Q9UJW7-2;Q9HCG1;Q9NYT6;Q86WZ6;Q08AN1;Q9Y2L8;Q8N3J9;P35789;Q86YE8-3;Q9UL59;Q3KP31;Q09FC8;Q5VIY5;Q14593-2;Q9UK12-2;Q9UK11;Q8N8E2-2;Q5VIY5-2;Q9NV72-2;Q9UK12;Q96NJ3-2;B4DX44;Q6U7Q0;P17028;Q6AZW8;Q09FC8-3;Q9NV72;Q14590-2;Q14593;P35789-2;Q96NJ3;P52740-2;P0C7X5;Q9P2F9;Q86YE8-4;Q86YE8-2;Q8N8E2;P35789-3;Q09FC8-2;Q09FC8-5;Q09FC8-6;P17022;P17022-2;Q3KP31-2;Q09FC8-4;P17040 ZNF841;ZNF513;ZNF534;ZNF132;ZNF225;ZNF234;ZNF441;ZNF45;ZNF16;ZNF665;ZNF233;ZNF888;ZNF844;ZNF573;ZNF28;ZNF816;ZNF227;ZNF224;ZNF235;ZNF814;ZSCAN20;ZNF445;ZNF112;ZFP28;ZNF267;ZNF229;ZNF765;ZNF160;ZNF226;ZNF616;ZKSCAN5;ZNF664;ZNF93;ZNF214;ZNF791;ZNF415;ZNF468;ZNF273;ZNF222;ZNF223;ZNF701;ZNF285;ZNF736;ZNF322;ZNF24;ZNF660;ZNF806;ZNF319;ZNF18 Zinc finger protein 841;Zinc finger protein 513;Zinc finger protein 534;Zinc finger protein 132;Zinc finger protein 225;Zinc finger protein 234;Zinc finger protein 441;Zinc finger protein 45;Zinc finger protein 16;Zinc finger protein 665;Zinc finger protein 233;Zinc finger protein 888;Zinc finger protein 844;Zinc finger protein 573;Zinc finger protein 28;Zinc finger protein 816;Zinc finger protein 227;Zinc finger protein 224;Zinc finger protein 235;Putative uncharacterized zinc finger protein 814;Zinc finger and SCAN domain-containing protein 20;Zinc finger protein 445;Zinc finger protein 112;Zinc finger protein 28 homolog;Zinc finger protein 267;Zinc finger protein 229;Zinc finger protein 765;Zinc finger protein 160;Zinc finger protein 226;Zinc finger protein 616;Zinc finger protein with KRAB and SCAN domains 5;Zinc finger protein 664;Zinc finger protein 93;Zinc finger protein 214;Zinc finger protein 791;Zinc finger protein 415;Zinc finger protein 468;Zinc finger protein 273;Zinc finger protein 222;Zinc finger protein 223;Zinc finger protein 701;Zinc finger protein 285;Zinc finger protein 736;Zinc finger protein 322;Zinc finger protein 24;Zinc finger protein 660;Zinc finger protein 806;Zinc finger protein 319;Zinc finger protein 18 yes no 0 0 0 0 1 7 0 1 31.302 31.302 4 0.046619 6177 TMT1-6 48.283 19.556 54.107 64.697 48.727 51.634 64.07 45.076 51 65 51 51 65 44 1 1 1 1 1 1 2305.1 19295 2060 19068 29663 38346 38346 1 VHTIPVCK Unmodified 952.51642 0.51642191 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 8 0 1 37.581 37.581 2 0.02658 8713 TMT1-7 84.244 59.908 7.2678 22.554 21.76 14.688 21.81 15.368 7 22 22 15 22 15 1 1 1 1 1 1 4033.3 19296 322 19069 29664 38347 38347 1 VHTVEDYQAIVDAEWNILYDK Unmodified 2520.2173 0.21726958 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 6 0 1 81.153 81.153 3 0.00013565 26372 TMT1-5 62.65 41.051 15.855 21.975 21.754 14.631 24.843 18.479 15 22 22 15 25 18 1 1 1 1 1 1 4507.7 19297 2496 19070 29665 38348 38348 1 VHTVEDYQAIVDAEWNILYDKLEK Unmodified 2890.4389 0.43888968 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 1 6 0 1 84.998 84.998 4 0.015323 27890 TMT1-5 38.406 27.199 38.277 27.682 35.457 36.849 20.534 22.866 36 29 36 36 22 22 1 1 1 1 1 1 3092.6 19298 2496 19071 29666 38349 38349 1 VHVGDEDFVHLR Unmodified 1421.7052 0.70516197 460 P04080 CSTB Cystatin-B yes yes 0 0 0 0 0 4 0 2 45.328 45.328 3;4 6.791E-11 12385 TMT1-3 157.68 130.01 397.14 524.54 435.58 400.58 508.5 465.19 375 525 450 399 519 450 2 2 2 2 2 2 114910 19299 460 19072 29667;29668 38350;38351 38350 2 VHVIFNYK Unmodified 1018.56 0.56000128 918 P27797 CALR Calreticulin yes yes 0 0 0 0 0 9 0 1 49.308 49.308 3 0.00068303 11492 TMT1-8 128.57 80.283 920.56 1647 1322.2 1174.6 1349 1545.6 873 1627 1366 1170 1392 1486 2 2 2 2 2 2 188570 19300 918 19073 29669 38352;38353 38352 2 VHVLWWNESADSR Unmodified 1597.7637 0.76373948 2855 Q9UFN0;Q9BS92 NIPSNAP3A;NIPSNAP3B Protein NipSnap homolog 3A;Protein NipSnap homolog 3B yes no 0 0 0 0 0 7.5 0.5 1 1 56.812 56.812 3 0.00019059 16165 TMT1-6 88.552 65.133 199.98 243.81 266.03 210.84 208.96 273.33 189 246 269 211 218 262 2 2 2 2 2 2 41958 19301 2855 19074 29670;29671 38354;38355 38354 2 VHVSEEGTEPEAMLQVLGPK Unmodified 2149.0725 0.072519601 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 5 0 2 63.154 63.154 3;4 8.5533E-36 19225 TMT1-4 157.91 132.04 183.84 245.87 271.84 225.25 237.85 295.96 174 247 275 225 247 284 3 3 3 3 3 3 41044 + 19302 506 19075 29672;29673 38356;38357;38358 38357 3 VHVVDLK Unmodified 808.48069 0.48068833 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 6 0 1 42.318 42.318 3 0.010631 11120 TMT1-5 79.597 46.476 91.825 162.06 119.09 85.429 136.31 119.77 87 160 123 87 138 116 1 1 1 1 1 1 8055.6 19303 2430 19076 29674 38359 38359 1 VHYGFILK Unmodified 975.55419 0.55418762 1644 Q12797-10;Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 0 0 0 0 0 9 0 1 51.925 51.925 3 0.01756 12552 TMT1-8 58.604 28.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19304 1644 19077 29675 38360 38360 1 VIAAEGEMNASR Unmodified 1246.5976 0.59758535 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 0 3.5 1.12 1 1 1 1 42.373 42.373 2 5.5078E-45 11158 TMT1-3 229.82 199.5 483.62 736.66 508.99 546.03 562.07 812.24 457 731 536 537 588 777 6 6 6 6 6 6 153560 19305 906 19078 29676;29677;29678;29679 38361;38362;38363;38364;38365;38366 38364 6 VIAAEGEMNASR Oxidation (M) 1262.5925 0.59249998 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 0 3 0 1 34.906 34.906 3 0.0037309 9261 TMT1-2 76.522 45.337 46.61 81.439 32.199 36.639 42.002 68.091 44 80 36 36 44 65 1 1 1 1 1 1 6573.1 19306 906 19078 29680 38367 38367 171 1 VIAALLQTMEDQGNQR Unmodified 1785.9043 0.90433206 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 8 0 1 84.458 84.458 2 0.00048647 27053 TMT1-7 58.098 50.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19307 65 19079 29681 38368 38368 1 VIACFDSLK Unmodified 1051.5372 0.53721693 2724 Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;Q5VZF2-3;Q5VZF2-2;Q5VZF2 MBNL1;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 yes no 0 0 0 0 0 7.5 0.5 1 1 63.281 63.281 2;3 0.0038201 18790 TMT1-7 78.149 50.377 122.82 158.51 142.71 115.18 165.05 126.41 116 159 146 116 167 123 2 2 2 2 2 2 19020 19308 2724 19080 29682;29683 38369;38370 38370 2 VIADNVK Unmodified 757.4334 0.43340378 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 5.5 0.5 1 1 42.419 42.419 2 0.008327 11082 TMT1-5 117.16 38.044 1212.5 2554.8 1972.9 1561.3 2149.6 2173 1153 2509 2035 1573 2195 2096 3 3 3 3 3 3 428250 19309 1352 19081 29684;29685 38371;38372;38373 38373 3 VIAGLYQR Unmodified 918.5287 0.52870115 1507 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 0 8 0 1 48.933 48.933 2 0.01285 13205 TMT1-7 96.048 43.749 84.214 193.59 109.3 93.676 135.67 127.25 80 189 116 94 138 123 1 1 1 1 1 1 10759 19310 1507 19082 29686 38374 38374 1 VIAINVDDPDAANYNDINDVKR Unmodified 2443.1979 0.19793112 1834 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 1 5 0 1 61.089 61.089 4 0.00016236 18394 TMT1-4 57.496 54.257 23.274 52.506 11.282 37.724 50.601 29.47 22 51 15 36 51 29 1 1 1 1 1 1 7035 19311 1834 19083 29687 38375 38375 1 VIAPVDEVQISILSSK Unmodified 1696.9611 0.96110188 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 6.5 0.5 1 1 75.525 75.525 3 1.4145E-11 23530 TMT1-6 120.7 105.07 307.18 398.27 332.31 275.82 321.49 442.81 290 399 342 276 334 424 3 3 3 3 3 3 79555 19312 740 19084 29688;29689 38376;38377;38378 38377 3 VIATLLR Unmodified 784.51707 0.51707383 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 58.915 58.915 2 0.037481 15326 TMT1-8 85.359 5.4203 130.51 112.1 151.2 131.99 116.08 189.63 123 116 152 131 123 181 1 1 1 1 1 1 21680 19313 1229 19085 29690 38379 38379 1 VICILSHPIK Unmodified 1178.6845 0.68454987 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 9 0 1 56.729 56.729 3 0.00032412 14365 TMT1-8 101.11 69.171 436.78 629.78 536.16 449.68 543.28 604.91 413 628 551 450 559 582 2 2 2 2 2 2 73827 19314 1217 19086 29691 38380;38381 38380 2 VICLVGAGISTSAGIPDFR Unmodified 1932.0139 0.01388251 2147 Q8IXJ6-4;Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 SIRT2 NAD-dependent protein deacetylase sirtuin-2 yes no 0 0 0 0 0 9 0 1 77.756 77.756 3 1.3363E-05 22717 TMT1-8 66.779 50.473 38.249 43.793 26.521 45.715 42.355 45.695 36 44 29 44 44 44 1 1 1 1 1 1 3569.9 19315 2147 19087 29692 38382 38382 1 VIDFDENTALDDAEEESFR Unmodified 2213.9601 0.96005184 1768 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 0 2 0 1 72.959 72.959 3 0.027438 23707 TMT1-1 37.999 30.629 7.3434 15.209 15.28 0 22.485 15.348 7 15 15 0 22 15 1 1 1 0 1 1 3209.9 19316 1768 19088 29693 38383 38383 1 VIDGLETLDELEKLPVNEK Unmodified 2153.1467 0.1467304 2629 Q9H2H8;Q9H2H8-2 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes no 0 0 0 0 1 5 0 1 77.947 77.947 4 1.2985E-30 24970 TMT1-4 147.56 133.31 84.842 109 75.31 96.137 112.53 127.91 80 109 80 94 116 123 1 1 1 1 1 1 8511.5 19317 2629 19089 29694 38384 38384 1 VIDIFDTDGNGEVDFK Unmodified 1782.8312 0.83120992 1470 P63098 PPP3R1 Calcineurin subunit B type 1 yes yes 0 0 0 0 0 5 0 1 78.804 78.804 3 0.00021026 25285 TMT1-4 76.151 59.407 38.203 43.663 34.502 36.772 27.61 30.126 36 44 36 36 29 29 1 1 1 1 1 1 5213.7 19318 1470 19090 29695 38385 38385 1 VIDNFTSQLK Unmodified 1163.6186 0.61863837 965 P30622-2;P30622-1;P30622 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 0 7 0 1 61.5 61.5 3 0.0014979 18086 TMT1-6 87.568 69.256 115.3 191.37 116.87 93.204 136.76 96.302 109 189 123 94 138 94 1 1 1 1 1 1 9237.7 19319 965 19091 29696 38386 38386 1 VIDPATATSVDLR Unmodified 1356.7249 0.72489436 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 4.5 0.5 1 1 56.855 56.855 2 2.0624E-36 16635 TMT1-4 206.27 129.66 153.77 219.58 119.72 156.94 167.53 211.62 145 218 130 153 174 203 3 3 3 3 3 3 41639 19320 1233 19092 29697;29698 38387;38388;38389 38388 3 VIDVFAMPQSGTGVSVEAVDPVFQAK Unmodified 2690.3626 0.36255361 74 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 0 7 0 1 84.923 84.923 3 1.0982E-08 27225 TMT1-6 63.573 50.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19321 74 19093 29699 38390 38390 1 VIDVTVPLQCLVK Unmodified 1482.848 0.84798638 2760 Q9NVH1-3;Q9NVH1 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 0 0 0 8 0 1 77.556 77.556 3 7.5567E-05 24432 TMT1-7 95.401 63.574 30.493 74.924 41.358 35.94 50.133 45.473 29 73 44 36 51 44 1 1 1 1 1 1 4035.2 19322 2760 19094 29700 38391 38391 1 VIDYAVK Unmodified 806.4538 0.45380487 1055 P38117 ETFB Electron transfer flavoprotein subunit beta yes yes 0 0 0 0 0 6 0 1 51.245 51.245 2 1.2006E-07 14641 TMT1-5 140.53 74.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19323 1055 19095 29701 38392 38392 1 VIEDNEYTAR Unmodified 1208.5673 0.56733108 550;573 P07948-2;P07948;P08631-3;P08631-2;P08631-4;P08631 LYN;HCK Tyrosine-protein kinase Lyn;Tyrosine-protein kinase HCK no no 0 0 0 0 0 2.5 0.5 1 1 41.44 41.44 2 1.3623E-09 11560 TMT1-1 175.07 112.52 115.47 144.36 127.61 109.69 97.758 113.4 109 145 131 109 102 109 1 1 1 1 1 1 31075 19324 550;573 19096 29702;29703 38393;38394 38393 2 VIEEEWQQVDR Unmodified 1429.6838 0.68375782 1089 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 0 2 0 2 57.283 57.283 2;3 0.00069455 17773 TMT1-1 73.435 47.497 30.723 35.63 36.049 13.698 29.184 15.157 29 36 36 15 29 15 1 1 1 1 1 1 2547.7 19325 1089 19097 29704;29705 38395;38396 38396 2 VIEEVSDMFAFIAR Unmodified 1625.8123 0.81232916 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 6.5 0.5 1 1 96.127 96.127 2;3 0.00091686 31820 TMT1-5 72.496 49.579 7.3906 34.328 17.076 6.7982 10.802 18.88 7 33 18 7 11 18 1 2 2 1 1 2 3834 19326 1150 19098 29706;29707 38397;38398 38397 2 VIEGDVVSALNK Unmodified 1242.682 0.68196691 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 5.5 0.5 2 2 62.792 62.792 2;3 1.3874E-43 19007 TMT1-4 219.03 153.73 1415.9 1569.2 1813.8 1287.8 1387.2 2140.4 1337 1593 1823 1301 1453 2045 4 4 4 4 4 4 594220 19327 1149 19099 29708;29709;29710;29711 38399;38400;38401;38402 38399 4 VIEHIMEDLDTNADK Unmodified 1741.8193 0.81926503 509 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 0 0 3.5 0.5 2 2 69.334 69.334 3;4 7.7744E-35 21762 TMT1-3 196.18 185.52 645.78 1149.6 677.12 690.75 993.75 963.02 611 1132 721 686 1012 930 7 7 7 7 7 7 198790 19328 509 19100 29712;29713;29714;29715 38403;38404;38405;38406;38407;38408;38409 38407 7 VIELENWTEGK Unmodified 1316.6612 0.66123147 2746 Q9NTX5-6;Q9NTX5-2;Q9NTX5;Q9NTX5-3;Q9NTX5-5;Q9NTX5-4 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 0 5 0 1 67.273 67.273 2 2.319E-06 20774 TMT1-4 103.34 74.384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19329 2746 19101 29716 38410 38410 1 VIEPGCVR Unmodified 928.48004 0.4800364 245 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 0 5 0 1 39.438 39.438 2 0.0244 9827 TMT1-4 85.813 30.209 68.567 109.6 105.04 134.27 141.14 127.09 65 109 109 131 145 123 1 1 1 1 1 1 9339.6 19330 245 19102 29717 38411 38411 1 VIEPQYFGLAYLFR Unmodified 1714.9083 0.90827845 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 87.617 87.617 2 0.00061608 26516 TMT1-8 72.34 43.708 30.764 36.825 28.04 21.858 27.49 53.582 29 37 29 22 29 51 1 1 1 1 1 1 6125.7 19331 1101 19103 29718 38412 38412 1 VIFFLPWQK Unmodified 1176.6696 0.66955173 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 84.74 84.74 2 6.0698E-22 25366 TMT1-8 199.55 136.07 192.78 238.71 218.33 220.66 244.62 318.15 182 240 225 218 254 305 2 2 2 2 2 2 51109 19332 1112 19104 29719 38413;38414 38413 2 VIFGEENR Unmodified 962.48214 0.48214489 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 0 4 0 1 46.089 46.089 2 0.0030675 12730 TMT1-3 79.809 61.774 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19333 614 19105 29720 38415 38415 1 VIFGLFGK Unmodified 879.52182 0.52182486 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 5 4 1 1 77.395 77.395 2 8.9928E-06 22306 TMT1-8 168.43 100.01 2098.9 3288 2782.9 1892.9 2872.7 3884.6 1987 3267 2842 1933 2957 3721 4 4 4 4 4 4 388810 19334 858 19106 29721;29722 38416;38417;38418;38419 38417 4 VIFLENYR Unmodified 1052.5655 0.56548059 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 0 7.5 0.5 1 1 61.809 61.809 2 0.001381 18144 TMT1-6 142.36 102.16 544.36 715.13 597.17 434.7 565.13 537.13 514 716 612 440 577 519 3 3 3 3 3 3 120730 19335 648;515 19107 29723;29724 38420;38421;38422 38420 3 VIFPAPTPK Unmodified 968.5695 0.56950333 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 9 0 1 57.519 57.519 2 0.0011897 14796 TMT1-8 126.52 72.365 138.83 165.81 150.47 99.312 170.43 204.07 131 167 153 102 174 196 2 2 2 2 2 2 16287 19336 1702 19108 29725 38423;38424 38424 2 VIFPYEAQNDDELTIK Unmodified 1893.936 0.93600934 2369 Q96B97;Q96B97-2;Q96B97-3 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 0 0 0 0 0 5 0 2 71.699 71.699 3;4 2.5819E-05 22507 TMT1-4 83.37 59.083 115.37 176.46 117.08 108.64 187.03 165.22 109 175 123 109 189 160 2 2 2 2 2 2 20982 19337 2369 19109 29726;29727 38425;38426 38426 2 VIFSGSLDFFSDSFFNSAVQK Unmodified 2341.1267 0.12666366 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 9 0 1 94.891 94.891 3 2.8142E-16 29206 TMT1-8 108.71 85.839 37.191 25.559 39.549 45.116 32.922 47.031 35 27 40 44 35 45 2 2 2 2 2 2 9019.1 19338 1063 19110 29728 38427;38428 38427 2 VIGGDDLSTLTGK Unmodified 1274.6718 0.67179615 395 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 0 6 0 2 63.809 63.809 2;3 3.0371E-10 19591 TMT1-5 134.3 110.32 306.64 439.94 387.77 286.37 398.3 445.95 290 439 396 290 408 429 2 2 2 2 2 2 76371 19339 395 19111 29729;29730 38429;38430 38430 2 VIGIDHIK Unmodified 893.53345 0.53345218 840 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 0 7 0 1 47.66 47.66 3 0.0011313 12653 TMT1-6 113.41 60.241 273.46 794.82 614.6 719.59 646.68 766.12 262 774 643 703 675 736 2 2 2 2 2 2 129940 19340 840 19112 29731 38431;38432 38432 2 VIGLSSDLQQVGGASAR Unmodified 1656.8795 0.87949752 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 7 0 1 58.774 58.774 3 1.8009E-05 17000 TMT1-6 80.026 64.27 250.89 456.82 366.72 281.14 394.08 484.44 238 451 377 284 405 465 1 1 1 1 1 1 16554 19341 60 19113 29732 38433 38433 1 VIGMHYFSPVDK Unmodified 1391.6908 0.69075746 1076 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 0 8 0 1 56.745 56.745 3 1.2448E-05 16251 TMT1-7 108.37 78.437 200.47 244.09 183.51 119.62 206.39 226.5 189 245 189 123 210 218 1 1 1 1 1 1 33430 19342 1076 19114 29733 38434 38434 1 VIGNQSLVNELAFTAR Unmodified 1730.9315 0.93153309 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 7 0 1 69.699 69.699 3 1.5616E-18 21338 TMT1-6 150.39 128.16 76.488 71.369 68.534 105.55 98.514 66.479 72 73 72 102 101 65 2 2 2 2 2 2 31034 19343 1663 19115 29734 38435;38436 38436 2 VIGSELVQK Unmodified 971.56515 0.56514624 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 7 0 1 53.452 53.452 3 0.0018306 14862 TMT1-6 89.698 21.801 115.83 121.61 86.788 158.02 156.52 104.27 109 123 94 152 160 102 1 1 1 1 1 1 7075.6 19344 1033 19116 29735 38437 38437 1 VIGSGCNLDSAR Unmodified 1247.5928 0.59283433 385;527 P00338;P00338-3;P00338-4;P00338-5;P00338-2;Q6ZMR3;P07864;P07195 LDHA;LDHAL6A;LDHC;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain no no 0 0 0 0 0 5 2.38 1 1 1 1 1 1 42.52 42.52 2 2.0821E-55 10674 TMT1-5 231.07 212.54 856.71 1165.2 739.38 972.88 1021.6 1113.6 808 1161 792 948 1056 1072 4 4 4 4 4 4 414830 19345 385;527 19117 29736;29737;29738;29739;29740;29741 38438;38439;38440;38441;38442;38443;38444 38442 7 VIGSLSNSK Unmodified 903.50255 0.50254598 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 8 0 1 46.016 46.016 2 0.034331 12076 TMT1-7 72.275 36.395 53.971 64.318 71.928 65.713 55.581 60.242 51 65 73 65 58 58 1 1 1 1 1 1 13795 19346 1106 19118 29742 38445 38445 1 VIGTLLGTVDK Unmodified 1114.6598 0.65977491 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 8 0 1 71.018 71.018 2 1.6084E-08 21948 TMT1-7 161.17 90.255 92.818 161.76 132.88 140.55 125.93 134.99 88 160 138 138 131 130 2 2 2 2 2 2 14391 19347 60 19119 29743 38446;38447 38447 2 VIGVCQLVNK Unmodified 1128.6325 0.6325143 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 9 0 1 59.381 59.381 2 7.201E-25 15473 TMT1-8 202.17 141.73 191.77 224.91 220.36 217.99 147.65 190.86 181 227 226 214 157 183 1 1 1 1 1 1 29444 19348 322 19120 29744 38448 38448 1 VIHDNFGIVEGLMTTVHAITATQK Unmodified 2594.3527 0.35265763 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 8.67 0.471 1 2 82.129 82.129 4;5 1.825E-64 24370 TMT1-8 173.68 152.07 834.92 1049.2 892.34 831.04 930.45 1643.9 788 1053 921 825 980 1567 6 6 6 6 6 6 398720 19349 472 19121 29745;29746;29747 38449;38450;38451;38452;38453;38454 38452 6 VIHDNFGIVEGLMTTVHAITATQK Oxidation (M) 2610.3476 0.34757225 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 0 9 0 2 73.082 73.082 4;5 1.7334E-16 20819 TMT1-8 94.449 67.368 238.83 259.03 217.29 211.4 275.45 316.2 225 262 225 210 283 304 3 3 3 3 3 3 30063 19350 472 19121 29748;29749 38455;38456;38457 38455 62 3 VIHECQQR Unmodified 1068.5135 0.51346179 1729 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 0 4 0 1 22.661 22.661 3 0.0047313 3830 TMT1-3 85.813 54.584 7.3662 10.956 15.045 11.008 6.2733 15.811 7 11 15 11 7 15 1 1 1 1 1 1 747.89 19351 1729 19122 29750 38458 38458 1 VIHELANER Unmodified 1079.5724 0.57235688 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 4 0 1 35.403 35.403 3 0.024857 8513 TMT1-3 53.683 26.568 130.29 158.95 149.83 99.622 156.02 197.02 123 160 152 102 160 189 1 1 1 1 1 1 13143 19352 1574 19123 29751 38459 38459 1 VIHLVER Unmodified 864.51814 0.51813647 1128 P46379-4;P46379-5;P46379-2;P46379;P46379-3 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 0 6 0 1 38.679 38.679 3 0.016992 9663 TMT1-5 71.342 36.535 54.111 64.708 48.055 66.713 78.056 74.525 51 65 51 65 80 72 1 1 1 1 1 1 15420 19353 1128 19124 29752 38460 38460 1 VIHVAGK Unmodified 722.44391 0.44390889 2834 Q9UBB4-2;Q9UBB4 ATXN10 Ataxin-10 yes no 0 0 0 0 0 8 0 1 37.011 37.011 3 0.037853 8460 TMT1-7 54.525 26.418 146.46 134.34 156.72 170.73 131.07 158.29 138 138 160 167 138 152 1 1 1 1 1 1 4810 19354 2834 19125 29753 38461 38461 1 VIIGLAFDCVDK Unmodified 1348.7061 0.70607317 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 7.5 0.5 1 1 75.437 75.437 3 9.1154E-08 23596 TMT1-7 122.51 99.275 84.658 117.12 99.348 79.965 82.614 137.29 80 117 102 80 87 131 2 2 2 2 2 2 18706 19355 704 19126 29754;29755 38462;38463 38463 2 VIILGDSGVGK Unmodified 1056.6179 0.61791009 1237 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 0 7.33 0.471 2 1 60.237 60.237 2;3 3.2393E-09 17638 TMT1-7 166.09 58.193 753.97 1202.6 1203.5 960.18 1155.9 1425.3 715 1197 1222 964 1194 1368 4 4 4 4 4 4 157220 19356 1237 19127 29756;29757;29758 38464;38465;38466;38467 38466 4 VIILSLDR Unmodified 927.57532 0.57531699 1501 P78344-2;P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 0 8 0 1 63.801 63.801 2 0.0048485 19024 TMT1-7 122.13 60.131 68.677 102.35 92.753 55.414 130.36 119.94 65 102 94 58 131 116 1 1 1 1 1 1 13386 19357 1501 19128 29759 38468 38468 1 VIISAPSADAPMFVMGVNHEK Unmodified 2212.102 0.10204559 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 7.71 1.03 1 2 2 2 67.455 67.455 3;4;5 4.1801E-31 20215 TMT1-7 142.86 117.03 622.81 902.39 599.47 607.65 776.47 1035.3 588 897 632 602 803 992 8 8 8 8 8 8 394790 19358 472 19129 29760;29761;29762;29763;29764;29765;29766 38469;38470;38471;38472;38473;38474;38475;38476;38477 38475 9 VIISAPSADAPMFVMGVNHEK Oxidation (M) 2228.097 0.096960213 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 0 7.67 0.471 1 2 61.959 61.959 3 1.6496E-17 18315 TMT1-6 117.27 104.9 146.72 158.79 93.39 126.27 138.32 219.91 138 160 101 123 145 210 3 3 3 3 3 3 56070 19359 472 19129 29767;29768;29769 38478;38479;38480 38478 63;64 3 VIITNFPAAK Unmodified 1072.6281 0.62808085 1146 P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 0 9 0 1 60.726 60.726 2 0.00045614 15995 TMT1-8 110.14 37.588 61.18 110.45 83.595 80.894 83.121 121.28 58 109 87 80 87 116 1 1 1 1 1 1 8920.3 19360 1146 19130 29770 38481 38481 1 VIIYQEK Unmodified 891.50657 0.50656873 2869 Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 0 7 0 1 49.682 49.682 2 0.033413 13397 TMT1-6 89.142 29.937 77.111 116.45 105.97 103.06 112.21 127.92 73 116 109 102 116 123 1 1 1 1 1 1 7201.1 19361 2869 19131 29771 38482 38482 1 VILAEFDYK Unmodified 1096.5805 0.58046195 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 68.382 68.382 2 0.0011055 20753 TMT1-6 124.23 113.82 123.53 228.66 144.32 154.63 154.29 173.62 117 225 153 152 160 167 2 2 2 2 2 2 28873 19362 3063 19132 29772;29773 38483;38484 38484 2 VILAEFDYKAEPLETFPFDQSK Unmodified 2586.2894 0.28937189 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 1 7 0 1 81.696 81.696 4 0.0015037 25982 TMT1-6 50.858 40.6 46.289 80.547 86.855 49.685 46.863 122.32 44 80 87 51 51 116 1 1 1 1 1 1 6394.4 19363 3063 19133 29774 38485 38485 1 VILGNELPK Unmodified 981.58588 0.58588168 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 7 0 1 57.526 57.526 2 0.00046147 16490 TMT1-6 137.13 113.16 393.76 502.55 300.61 302.85 379.08 618.12 371 502 320 300 396 590 1 1 1 1 1 1 55721 19364 923 19134 29775 38486 38486 1 VILGSEAAQQHPEEVR Unmodified 1761.901 0.90096124 2782 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 0 4 0 1 41.189 41.189 3 2.023E-29 10789 TMT1-3 190.41 176.39 68.762 93.948 85.619 56.83 77.704 97.987 65 94 87 58 80 94 1 1 1 1 1 1 31014 19365 2782 19135 29776 38487 38487 1 VILHLKEDQTEYLEER Unmodified 2014.0371 0.037120373 545;561;1954 P08238;Q58FF7;P07900;P07900-2;Q58FF6 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 0 0 0 0 1 5.5 0.5 2 2 54.53 54.53 3;4 3.669E-29 15778 TMT1-4 189.31 171.88 967.67 1295.2 915.75 857.96 878.06 1275.5 913 1293 958 850 919 1220 5 5 5 5 5 5 225480 19366 561;545;1954 19136 29777;29778;29779;29780 38488;38489;38490;38491;38492 38488 5 VILITPTPLCETAWEEQCIIQGCK Unmodified 2858.4017 0.40165801 1921 Q2TAA2;Q2TAA2-2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes no 0 0 0 0 0 7 0 1 83.769 83.769 4 1.0713E-11 26790 TMT1-6 91.725 77.141 61.821 42.083 33.783 52.368 72.413 44.838 58 44 36 51 73 44 1 1 1 1 1 1 6199 19367 1921 19137 29781 38493 38493 1 VILQDFTGVPAVVDFAAMR Unmodified 2048.0765 0.076482767 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 8 0 1 89.387 89.387 3 0.00027593 28933 TMT1-7 62.739 53.456 39.401 35.305 20.482 22.569 13.605 30.526 37 36 22 22 15 29 1 1 1 1 1 1 6631.6 19368 832 19138 29782 38494 38494 1 VIMDYESLEK Unmodified 1225.59 0.59004036 394 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 0 5 0 1 62.896 62.896 3 0.00030877 19013 TMT1-4 102.06 67.676 284.72 419.41 303.67 237.06 322.77 366.02 269 417 315 239 331 352 2 2 2 2 2 2 43080 19369 394 19139 29783 38495;38496 38495 2 VIMITGDNK Unmodified 989.52157 0.52156686 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 no no 0 0 0 0 0 7 0 1 53.344 53.344 2 0.0005787 14830 TMT1-6 133.86 77.852 201.09 200.49 116.23 85.63 134.69 166.72 189 203 123 87 138 160 1 1 1 1 1 1 17355 19370 748 19140 29784 38497 38497 1 VIMVTGDHPITAK Unmodified 1380.7435 0.74352131 481 P05023-3;P05023-4;P05023;P05023-2;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 no no 0 0 0 0 0 7 0 1 49.651 49.651 3 0.00020118 13391 TMT1-6 88.163 57.335 99.415 176.87 93.225 135.27 125.37 158.45 94 174 102 131 131 152 1 1 1 1 1 1 9031.9 19371 481 19141 29785 38498 38498 1 VINDPIHGHIELHPLLVR Unmodified 2071.1691 0.16907802 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 7 0 1 54.053 54.053 4 0.00081184 15123 TMT1-6 59.351 36.876 129.56 262.7 184.21 135.47 233.34 242.79 123 258 191 138 237 234 1 1 1 1 1 1 19597 19372 3006 19142 29786 38499 38499 1 VINEPTAAALAYGLDK Unmodified 1644.8723 0.87228688 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 6 0 1 69.262 69.262 3 8.275E-06 21684 TMT1-5 89.502 65.226 123.2 136.92 96.266 118.13 155.42 189.58 116 138 102 116 160 182 2 2 2 2 2 2 39587 19373 1058 19143 29787 38500;38501 38500 2 VINEPTAAALAYGLDKSEDK Unmodified 2104.0688 0.068814432 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 1 6 0 1 65.566 65.566 3 5.5392E-10 20294 TMT1-5 100.27 75.679 68.902 94.338 61.714 58.546 62.176 90.968 65 94 65 58 65 87 1 1 1 1 1 1 11959 19374 1058 19144 29788 38502 38502 1 VINLGKPLTNLGTATLNIQWPK Unmodified 2390.3686 0.36856569 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 9 0 2 78.015 78.015 3;4 1.231E-15 22804 TMT1-8 97.271 76.322 146.69 142.52 111.65 102.61 117.95 174.66 138 145 116 102 123 167 2 2 2 2 2 2 26007 19375 856 19145 29789;29790 38503;38504 38504 2 VINQILTEMDGMSTK Unmodified 1678.827 0.82699294 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 7 0 2 81.765 81.765 3 6.3566E-09 25946 TMT1-6 94.339 74.762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19376 1311 19146 29791;29792 38505;38506 38505 2 VINSVDIK Unmodified 886.51238 0.51238239 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 6 0 2 51.412 51.412 2;3 0.0012013 14774 TMT1-5 144.09 62.305 1106.2 1720.9 1430.4 1199.4 1548.9 1569.7 1047 1710 1472 1202 1585 1514 3 3 3 3 3 3 567200 19377 250 19147 29793;29794 38507;38508;38509 38508 3 VINTPEVLR Unmodified 1039.6026 0.60259438 2622 Q9H223 EHD4 EH domain-containing protein 4 yes yes 0 0 0 0 0 6 0 1 51.376 51.376 2 0.0019959 14692 TMT1-5 78.264 5.3845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19378 2622 19148 29795 38510 38510 1 VIPELNGK Unmodified 868.50182 0.5018177 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 6 0 1 53.721 53.721 2 0.0011715 15659 TMT1-5 144.38 71.336 400.2 699.98 494.05 527.29 327.66 718.73 379 691 519 515 360 683 1 1 1 1 1 1 90407 19379 472 19149 29796 38511 38511 1 VIPGAAEK Unmodified 783.44905 0.44905385 1812 Q15019;Q15019-2 SEPT2 Septin-2 yes no 0 0 0 0 0 6 0 1 43.642 43.642 2 0.0061577 11605 TMT1-5 109.01 39.014 350.8 425.51 372.8 369.66 259.53 476.56 331 428 385 363 280 454 1 1 1 1 1 1 69724 19380 1812 19150 29797 38512 38512 1 VIPSPFK Unmodified 786.46398 0.46397563 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 9 0 1 58.477 58.477 2 0.040201 15077 TMT1-8 84.244 36.07 99.349 169.13 111 86.637 97.756 144.32 94 167 116 87 102 138 1 1 1 1 1 1 15380 19381 1006 19151 29798 38513 38513 1 VIQALAMK Unmodified 872.51536 0.51535927 1101 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 59.68 59.68 2 0.0054646 15599 TMT1-8 101.64 42.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19382 1101 19152 29799 38514 38514 1 VIQCFAETGQVQK Unmodified 1506.7501 0.75006325 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 7 0 1 55.867 55.867 3 1.0468E-11 15785 TMT1-6 147.73 115.11 237.99 380.83 254.1 265.39 252.02 256.11 225 377 268 261 261 247 2 2 2 2 2 2 64386 19383 1540 19153 29800 38515;38516 38515 2 VIQGQTDPEYLLLGQR Unmodified 1828.9683 0.96831253 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 5 0 1 67.582 67.582 3 1.4593E-11 20895 TMT1-4 105.39 86.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19384 651 19154 29801 38517 38517 1 VIQHNALEDR Unmodified 1193.6153 0.61528433 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 4 0 1 32.955 32.955 3 0.00012385 7555 TMT1-3 111.27 71.719 46.582 57.616 57.127 43.485 63.932 60.004 44 58 58 44 65 58 1 1 1 1 1 1 13667 19385 220 19155 29802 38518 38518 1 VIQQLEGAFALVFK Unmodified 1561.8868 0.88681473 1602 Q06210-2;Q06210;O94808 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 0 0 0 0 0 9 0 1 97.936 97.936 2 0.0034196 30232 TMT1-8 66.267 45.365 7.4702 0 6.8554 15.286 37.231 22.39 7 0 7 15 37 22 1 0 1 1 1 1 1416.4 19386 1602 19156 29803 38519 38519 1 VIQQSLEQEEAEHK Unmodified 1666.8162 0.81622856 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 3 0.816 1 1 1 45.372 45.372 3;4 1.9578E-10 12352 TMT1-3 122.63 105.14 192.2 200.2 169.18 137.04 197.47 280.05 181 203 174 138 204 268 2 2 2 2 2 2 21597 19387 251 19157 29804;29805;29806 38520;38521;38522 38522 3 VIQYLAYVASSHK Unmodified 1477.7929 0.79291434 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 9 0 3 69.621 69.621 2;3;4 1.0017E-23 19566 TMT1-8 181.77 142.14 1642.7 2034.5 1895.9 1488.7 1775 2273.2 1551 2046 1934 1496 1837 2180 5 5 5 5 5 5 342370 19388 1019 19158 29807;29808;29809 38523;38524;38525;38526;38527 38524 5 VIRPLDQPSSFDATPYIK Unmodified 2046.0786 0.078591257 2116 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 0 0 0 0 1 8 0 1 61.562 61.562 4 0.0076008 18174 TMT1-7 49.993 35.224 91.849 177.23 102.22 103.85 82.322 113.84 87 174 109 102 87 109 1 1 1 1 1 1 12613 19389 2116 19159 29810 38528 38528 1 VISELNGKNIEDVIAQGIGK Unmodified 2096.1477 0.14773345 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 1 6 0 1 77.831 77.831 4 0.0080104 25144 TMT1-5 44.816 30.202 30.572 58.955 41.597 52.074 63.28 67.484 29 58 44 51 65 65 1 1 1 1 1 1 5326.5 19390 495 19160 29811 38529 38529 1 VISEYQK Unmodified 865.45453 0.45453316 2722 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 0 6 0 1 43.18 43.18 2 0.011901 11453 TMT1-5 103.92 55.414 60.984 125.02 104.13 134.76 118.08 127.75 58 123 109 131 123 123 1 1 1 1 1 1 7646.6 19391 2722 19161 29812 38530 38530 1 VISGVLQLGNIVFK Unmodified 1485.8919 0.89190011 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 9 0 6 85.629 85.629 2;3 5.4827E-21 26252 TMT1-8 172.8 131.62 1145.9 1124.1 1584 1247.6 1463.1 1812 1082 1154 1583 1253 1513 1739 6 6 6 6 6 6 843360 19392 1019 19162 29813;29814;29815;29816;29817;29818 38531;38532;38533;38534;38535;38536;38537;38538;38539 38536 9 VISGVLQLGNIVFKK Unmodified 1613.9869 0.98686312 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 9 0 1 79.044 79.044 3 7.6039E-08 23167 TMT1-8 109.07 80.79 467.01 653.04 486.55 387.15 421.81 905.79 441 651 504 388 450 861 2 2 2 2 2 2 74901 19393 1019 19163 29819 38540;38541 38540 2 VISKPISEHK Unmodified 1136.6554 0.65535823 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 1 9 0 1 37.544 37.544 4 0.020019 7255 TMT1-8 60.598 34.939 68.824 102.75 67.763 105.75 90.113 97.633 65 102 73 102 94 94 1 1 1 1 1 1 3465.6 19394 859 19164 29820 38542 38542 1 VISPSEDR Unmodified 901.45051 0.45051041 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 0 3 0 1 33.943 33.943 2 0.0040855 8937 TMT1-2 127.56 58.778 84.814 85.174 100.2 103.84 89.138 128.57 80 87 102 102 94 123 1 1 1 1 1 1 18078 19395 757 19165 29821 38543 38543 1 VISTMSVGIDHLALDEIK Unmodified 1940.0289 0.028863873 2843 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 0 6 0 1 72.613 72.613 3 2.5631E-06 23073 TMT1-5 88.19 54.566 30.776 35.777 27.034 45.847 33.716 53.404 29 36 29 44 36 51 1 1 1 1 1 1 6910.5 19396 2843 19166 29822 38544 38544 1 VISYEEGK Unmodified 923.46001 0.46001246 1847 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 0 0 4 0 1 45.147 45.147 2 0.0030441 12349 TMT1-3 133.55 81.249 129.92 200.02 176.76 192.88 168.38 260.63 123 199 183 189 178 249 1 1 1 1 1 1 20470 19397 1847 19167 29823 38545 38545 1 VITDENWR Unmodified 1031.5036 0.50360861 2638 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 0 4.5 0.5 1 1 47.597 47.597 2 0.0043634 13304 TMT1-3 125.58 104.72 261.75 349.43 254.86 288.11 319.79 323.47 247 349 268 283 329 312 2 2 2 2 2 2 57375 19398 2638 19168 29824;29825 38546;38547 38546 2 VITEEEK Unmodified 846.43346 0.43346336 897 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 0 2.5 0.5 2 2 40.388 40.388 2;3 0.0015761 11433 TMT1-2 119.56 25.55 538.5 698.82 514.96 481.01 630 687.71 508 699 537 479 646 662 4 4 4 4 4 4 59909 19399 897 19169 29826;29827;29828;29829 38548;38549;38550;38551 38551 4 VITEYLNAQESAK Unmodified 1464.746 0.74602373 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 60.149 60.149 3 7.6477E-12 18099 TMT1-5 149.69 105.15 300.12 388.15 265.96 225.33 252.17 396.82 283 388 278 225 264 379 2 2 2 2 2 2 35492 19400 2071 19170 29830;29831 38552;38553 38553 2 VITIMQNPR Unmodified 1070.5906 0.59064948 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 0 9 0 1 50.723 50.723 2 0.013763 12075 TMT1-8 74.486 54.183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19401 1425 19171 29832 38554 38554 1 VITISDYSECK Unmodified 1313.6173 0.61731774 1079 P41218 MNDA Myeloid cell nuclear differentiation antigen yes yes 0 0 0 0 0 5 0 2 55.916 55.916 2;3 1.6099E-31 16336 TMT1-4 182.64 148.26 108.02 152.61 109.52 141.11 170.12 157.18 102 152 116 138 174 152 1 1 1 1 1 1 21192 19402 1079 19172 29833;29834 38555;38556 38556 2 VITNQYNNPAGLYSSENISNFNNALESK Unmodified 3100.4738 0.47377163 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6.33 0.471 2 1 71.002 71.002 3;4 1.597E-16 22453 TMT1-5 95.794 85.282 61.636 72.868 38.779 68.784 55.424 91.16 58 73 43 66 59 87 2 2 2 2 2 2 49458 19403 41 19173 29835;29836;29837 38557;38558;38559 38558 3 VITVLVGNK Unmodified 941.59097 0.59096706 1873 Q15771 RAB30 Ras-related protein Rab-30 yes yes 0 0 0 0 0 9 0 1 61.777 61.777 2 0.0018237 16404 TMT1-8 112.84 56.831 107.88 152.21 134.44 116.66 112.35 105.53 102 152 138 116 116 102 1 1 1 1 1 1 8619.8 19404 1873 19174 29838 38560 38560 1 VIVAVGDR Unmodified 827.4865 0.48650199 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 6 0 1 43.973 43.973 2 0.041949 11753 TMT1-5 76.847 16.553 92.059 122.77 113.14 101.96 148.08 181.26 87 123 116 102 152 174 1 1 1 1 1 1 9123.5 19405 2259 19175 29839 38561 38561 1 VIVDFSSPNIAK Unmodified 1288.7027 0.70270235 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 8 0 1 64.471 64.471 3 5.9748E-08 19288 TMT1-7 125.22 102.34 84.619 84.63 133.5 61.479 85.589 75.376 80 87 131 65 87 73 1 1 1 1 1 1 15243 19406 1296 19176 29840 38562 38562 1 VIVFDGVPSK Unmodified 1059.5964 0.59644637 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 8 0 1 62.563 62.563 3 0.0010263 18555 TMT1-7 63.283 31.911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19407 1383 19177 29841 38563 38563 1 VIVIPVGIGPHANLK Unmodified 1525.9344 0.93443362 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 62.974 62.974 3 1.6503E-24 16844 TMT1-8 160.22 141.15 169.53 201.36 191.39 173.97 255.71 270.93 160 203 196 174 261 261 2 2 2 2 2 2 43882 19408 471 19178 29842 38564;38565 38564 2 VIVMLTELK Unmodified 1044.6253 0.62530365 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 9 0 1 76.479 76.479 2 7.0209E-15 22183 TMT1-8 190.26 121.84 107.86 168.34 124.23 100.7 179.82 141.98 102 167 123 102 181 138 2 2 1 2 2 2 21716 19409 570 19179 29843 38566;38567 38566 2 VIVMPTTK Unmodified 887.51502 0.51502492 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 9 0 1 53.569 53.569 2 0.026802 13222 TMT1-8 72.547 30.568 61.385 94.834 62.401 43.328 55.547 91.157 58 94 65 44 58 87 1 1 1 1 1 1 6077.5 19410 2741 19180 29844 38568 38568 1 VIVNSLK Unmodified 771.48544 0.48543935 1714 Q13510-2;Q13510 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 9 0 1 50.147 50.147 2 0.0080197 11818 TMT1-8 139.28 36.566 153.23 264.5 172.01 161.47 167.83 196.68 145 261 181 160 174 189 1 1 1 1 1 1 20693 19411 1714 19181 29845 38569 38569 1 VIVSDVQESFIWVR Unmodified 1675.8934 0.89335667 1850 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 0 7 0 1 77.444 77.444 3 2.1409E-05 24309 TMT1-6 92.856 73.018 23.195 28.542 44.857 20.682 36.726 29.866 22 29 44 22 37 29 1 1 1 1 1 1 6309.6 19412 1850 19182 29846 38570 38570 1 VIVVGNPANTNCLTASK Unmodified 1756.9142 0.91416847 1074 P40925-3;P40925;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 0 8 0 1 57.595 57.595 3 8.8628E-15 16569 TMT1-7 128.64 114.81 192.33 201.66 145.26 162.12 159.96 211.83 181 204 153 159 167 203 2 2 2 2 2 2 34447 19413 1074 19183 29847 38571;38572 38571 2 VIYSQPSAR Unmodified 1019.54 0.53999412 3046 Q9Y624;Q9Y624-2 F11R Junctional adhesion molecule A yes no 0 0 0 0 0 6 0 1 37.345 37.345 2 0.00010672 9114 TMT1-5 150.36 93.641 68.968 79.411 63.303 42.979 71.269 90.708 65 80 65 44 73 87 1 1 1 1 1 1 7896.9 19414 3046 19184 29848 38573 38573 1 VIYTLSALSWTPIAQNR Unmodified 1932.0469 0.046897198 722 P15498-2;P15498 VAV1 Proto-oncogene vav yes no 0 0 0 0 0 9 0 1 82.572 82.572 3 2.3393E-10 24550 TMT1-8 99.055 78.701 54.272 50.047 33.316 52.961 42.315 37.169 51 51 36 51 44 36 1 1 1 1 1 1 8672.7 19415 722 19185 29849 38574 38574 1 VKADQDSEAMK Unmodified 1220.5707 0.5707019 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 1 5 0 1 36.002 36.002 3 7.2007E-05 8456 TMT1-4 107.99 96.079 362.62 661.47 530.8 462.82 500.78 1002.7 344 653 548 461 532 954 1 1 1 1 1 1 43728 19416 3010 19186 29850 38575 38575 1 VKAEAEAAR Unmodified 943.50869 0.50869399 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 5 0 1 29.549 29.549 3 0.026031 5966 TMT1-4 62.166 29.416 130.49 174.64 101.55 117.97 146.8 197.29 123 174 109 116 152 189 1 1 1 1 1 1 21107 19417 1833 19187 29851 38576 38576 1 VKAEGPGLSR Unmodified 1012.5665 0.56654322 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5.75 2.95 1 1 1 1 33.571 33.571 3 0.00010668 7105 TMT1-6 123.95 55.291 3519.1 4330.1 3966.1 3254.8 3536.7 4657.7 3322 4355 4056 3255 3677 4464 5 5 5 5 5 5 582940 19418 831 19188 29852;29853;29854;29855 38577;38578;38579;38580;38581 38580 5 VKASGPGLNTTGVPASLPVEFTIDAK Unmodified 2568.3799 0.37991824 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 0 1 68.695 68.695 4 3.1919E-16 20964 TMT1-7 99.614 91.107 138.74 165.55 166.41 81.902 173.91 126.16 131 167 167 87 174 123 1 1 1 1 1 1 29787 19419 831 19189 29856 38582 38582 1 VKDILQNVFK Unmodified 1202.7023 0.70230842 1125 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 1 9 0 1 67.041 67.041 3 0.004558 18478 TMT1-8 69.721 45.534 146.24 218.98 122.66 116.85 139.52 197.49 138 217 131 116 145 189 1 1 1 1 1 1 18373 19420 1125 19190 29857 38583 38583 1 VKDLESLFHR Unmodified 1242.6721 0.67207093 1577 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 1 8 0 1 55.538 55.538 4 0.0010291 15798 TMT1-7 92.866 21.517 294.45 404.95 302.09 266.71 378.31 414.54 278 404 314 267 387 399 1 1 1 1 1 1 18816 19421 1577 19191 29858 38584 38584 1 VKDLQYSTDYTFK Unmodified 1606.7879 0.78788854 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 7 0 1 55.679 55.679 4 0.0030985 15749 TMT1-6 66.533 32.439 122.96 143.78 132.44 171.31 176.83 134.6 116 145 138 167 181 131 1 1 1 1 1 1 21181 19422 570 19192 29859 38585 38585 1 VKDPNSGLPK Unmodified 1053.5819 0.58185893 2887 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 1 7.5 0.5 1 1 39.933 39.933 3 0.00063041 9585 TMT1-6 101.35 63.079 652.87 703.95 765 677.62 599.75 940.15 616 715 777 672 634 898 2 2 2 2 2 2 94048 19423 2887 19193 29860;29861 38586;38587 38586 2 VKDTDDVPMILVGNK Unmodified 1642.86 0.86000763 1384 P61224;P61224-3;A6NIZ1;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 1 5.5 2.06 1 3 2 61.288 61.288 2;3;4 6.6937E-19 18501 TMT1-5 126.1 101.31 1466.5 1694.5 1492.7 1228.8 1357.3 2174.3 1383 1709 1531 1229 1423 2076 7 7 7 7 7 7 548960 19424 1384 19194 29862;29863;29864;29865;29866;29867 38588;38589;38590;38591;38592;38593;38594;38595 38592 8 VKDTDDVPMILVGNK Oxidation (M) 1658.8549 0.85492225 1384 P61224;P61224-3;A6NIZ1;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 1 0 1 6.5 0.5 2 2 56.527 56.527 3;4 0.00054799 16650 TMT1-5 84.559 62.405 882.5 1050.4 1010.8 812.25 972.93 1315.4 833 1059 1030 815 1009 1260 5 5 5 5 5 5 118410 19425 1384 19194 29868;29869;29870;29871 38596;38597;38598;38599;38600 38596 228 5 VKDTEDVPMILVGNK Unmodified 1656.8757 0.87565769 1447 P62834 RAP1A Ras-related protein Rap-1A yes yes 0 0 0 0 1 6 0 2 61.207 61.207 3;4 1.9026E-05 18568 TMT1-5 93.424 87.61 222.86 228.12 221.28 165.21 219.48 241.05 210 232 225 167 225 232 2 2 2 2 2 2 19434 19426 1447 19195 29872;29873 38601;38602 38602 2 VKDVLLK Unmodified 813.53239 0.53238955 20 B0I1T2;B0I1T2-4;B0I1T2-3;B0I1T2-2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes no 0 0 0 0 1 8 0 1 50.01 50.01 3 0.034114 13563 TMT1-7 68.735 15.568 341.34 549.94 414.21 342.46 237.92 502.76 323 545 429 340 259 478 1 1 1 1 1 1 39705 19427 20 19196 29874 38603 38603 1 VKEDENVPFLLVGNK Unmodified 1699.9145 0.91448604 649 P11233 RALA Ras-related protein Ral-A yes yes 0 0 0 0 1 7 0 2 56.781 56.781 3;4 0.0019915 18833 TMT1-6 66.965 50.566 1126.2 1489.3 1524.6 1094.7 1297 1398.9 1065 1495 1542 1107 1334 1347 2 2 2 2 2 2 518220 19428 649 19197 29875;29876 38604;38605 38605 2 VKEDPDGEHAR Unmodified 1251.5844 0.58437813 1261 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 1 2.5 0.5 1 1 25.022 25.022 4 0.0043399 5240 TMT1-2 72.731 59.531 253.87 388.84 283.59 295.22 315.96 334.24 240 386 297 291 326 322 2 2 2 2 2 2 22969 19429 1261 19198 29877;29878 38606;38607 38607 2 VKEEIIDAIR Unmodified 1184.6765 0.6764876 2872 Q9UI08;Q9UI08-2;Q9UI08-5 EVL Ena/VASP-like protein yes no 0 0 0 0 1 6 0 1 57.866 57.866 3 0.034624 17307 TMT1-5 55.578 5.6442 139.09 174.08 100.49 141.38 184.2 203.68 131 174 109 138 189 196 1 1 1 1 1 1 21978 19430 2872 19199 29879 38608 38608 1 VKEEIIEAFVQELR Unmodified 1701.9301 0.93013611 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 6.75 0.829 2 1 1 83.024 83.024 3;4 1.3781E-14 26574 TMT1-6 136.34 108.54 2184.3 2848.7 2687.7 2183 2392.7 3218.2 2064 2858 2742 2185 2489 3083 11 11 11 11 11 11 272790 19431 1225 19200 29880;29881;29882;29883 38609;38610;38611;38612;38613;38614;38615;38616;38617;38618;38619 38615 11 VKEEVFIQQR Unmodified 1274.6983 0.69828568 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 1 6 0 1 44.117 44.117 3 0.00020147 11811 TMT1-5 113.03 83.271 706.5 968.43 1084.8 762.6 821.54 1190.7 669 972 1091 771 858 1139 1 1 1 1 1 1 88946 19432 471 19201 29884 38620 38620 1 VKEFCENLSADCR Unmodified 1626.713 0.71302582 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 1 5 0 1 45.964 45.964 3 0.00015336 12407 TMT1-4 94.059 84.479 222.99 216.59 210.42 230.28 281.46 268.06 210 221 217 227 288 259 1 1 1 1 1 1 20919 19433 956 19202 29885 38621 38621 1 VKEGMNIVEAMER Unmodified 1504.7378 0.737784 1461 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 1 5.5 0.5 1 1 57.165 57.165 3 2.6848E-16 16954 TMT1-5 168.67 137.45 1650.3 2497.6 1659.8 1403.9 1573.1 3058.2 1559 2478 1738 1402 1666 2911 4 4 4 4 4 4 200840 19434 1461 19203 29886;29887 38622;38623;38624;38625 38625 4 VKETADFK Unmodified 936.49165 0.49164694 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 3.5 2.5 1 1 40.986 40.986 3 0.0049266 10372 TMT1-5 94.297 38.73 27110 33017 30540 21406 27379 33007 25590 33229 31064 21721 28199 31696 3 3 3 3 3 3 1328500 19435 831 19204 29888;29889 38626;38627;38628 38627 3 VKGDADVSVPK Unmodified 1113.603 0.60298831 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 6 0 1 41.569 41.569 3 0.0026673 10797 TMT1-5 81.647 58.042 219.23 524.36 400.16 268.95 355.43 346.97 209 513 411 274 363 335 1 1 1 1 1 1 30146 19436 1632 19205 29890 38629 38629 1 VKGDFDVSVPK Unmodified 1189.6343 0.63428844 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 7 0 1 51.145 51.145 3 0.0025123 13965 TMT1-6 82.543 49.134 438.83 641.05 363.03 385.98 352.7 665.78 414 636 389 379 376 634 1 1 1 1 1 1 24968 19437 1632 19206 29891 38630 38630 1 VKGDLDIAGPNLEGDFK Unmodified 1786.9101 0.91012895 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 6 0 1 61.899 61.899 4 0.0016759 18850 TMT1-5 61.648 52.94 61.31 103.26 67.75 106.2 66.236 152.68 58 102 73 102 73 145 1 1 1 1 1 1 8765 19438 1632 19207 29892 38631 38631 1 VKGDVDVSLPK Unmodified 1155.6499 0.6499385 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 1 6.5 0.5 1 1 49.299 49.299 2;3 0.0021904 13821 TMT1-5 107.85 58.479 1564.7 2582.7 1555.9 1347.9 1914.5 2087 1479 2551 1644 1351 1958 2009 2 2 2 2 2 2 126710 19439 1632 19208 29893;29894 38632;38633 38632 2 VKGDVDVSVPK Unmodified 1141.6343 0.63428844 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 1 6 0 1 45.589 45.589 3 0.019185 12433 TMT1-5 61.235 33.586 322.98 630.71 366.4 361.72 353.27 529.32 306 619 390 357 371 506 1 1 1 1 1 1 45006 19440 1632 19209 29895 38634 38634 1 VKGDVDVTLPK Unmodified 1169.6656 0.66558856 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 7 0 1 52.268 52.268 2 0.019589 14441 TMT1-6 95.81 3.8736 54.307 42.59 33.745 53.39 18.198 68.771 51 44 36 51 22 65 1 1 1 1 1 1 11173 19441 1632 19210 29896 38635 38635 1 VKGNNVYCLDR Unmodified 1336.6558 0.65576893 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 7 0 1 39.987 39.987 3 0.017059 9591 TMT1-6 62.454 46.299 68.451 140.57 98.355 72.499 75.921 128.95 65 138 102 73 80 123 1 1 1 1 1 1 8381.1 19442 1287 19211 29897 38636 38636 1 VKLEGHELPADLPPHLVPPSK Unmodified 2272.258 0.25795261 2654 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 1 7 0 1 54.256 54.256 5 0.0046712 15258 TMT1-6 44.105 29.645 99.471 114.43 136.75 116.67 104.51 120.67 94 116 138 116 109 116 1 1 1 1 1 1 9771.6 19443 2654 19212 29898 38637 38637 1 VKLEGHELPNELPAHLLPPSK Unmodified 2317.2794 0.27941633 2802 Q9NZN3 EHD3 EH domain-containing protein 3 yes yes 0 0 0 0 1 7 0 1 55.613 55.613 5 5.7617E-18 15809 TMT1-6 117.04 103.59 322.44 497.38 388.64 309.19 460.78 393 305 494 401 312 467 381 2 2 2 2 2 2 21287 19444 2802 19213 29899 38638;38639 38639 2 VKLQEMEGTVK Unmodified 1260.6748 0.67477304 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 7 0 1 48.586 48.586 3 0.0010864 12957 TMT1-6 90.793 56.907 761.2 1328.3 784.37 749.71 599.21 1803.6 720 1309 833 739 665 1708 1 1 1 1 1 1 72400 19445 1019 19214 29900 38640 38640 1 VKMDCQECPEGYR Oxidation (M) 1686.68 0.68001113 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 1 4 0 1 33.207 33.207 3 0.032171 7625 TMT1-3 64.534 59.105 84.907 92.987 77.97 57.991 40.214 91.594 80 94 80 58 44 87 1 1 1 1 1 1 8231.1 19446 831 19215 29901 38641 38641 160 1 VKMDCQECPEGYR Unmodified 1670.6851 0.68509651 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 4 0 1 37.981 37.981 3 0.00011918 9523 TMT1-3 79.885 68.117 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19447 831 19215 29902 38642 38642 1 VKPAPDETSFSEALLK Unmodified 1730.9091 0.90906631 1654 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 1 6.5 0.5 1 1 59.688 59.688 3 2.9327E-14 17400 TMT1-6 109.04 73.382 84.678 116.09 96.968 134.76 140.31 150.57 80 116 102 131 145 145 1 1 1 1 1 1 25488 19448 1654 19216 29903;29904 38643;38644 38644 2 VKPFMTGAAEQIK Unmodified 1418.7592 0.75917137 687 P13693;P13693-2;Q56UQ5 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 0 0 0 0 1 9 0 2 53.26 53.26 3;4 6.623E-10 13067 TMT1-8 120.3 57.379 473.91 581.57 469.45 404.92 519.29 723.92 447 584 485 405 538 693 2 2 2 2 2 2 47979 19449 687 19217 29905;29906 38645;38646 38645 2 VKPLLQVSR Unmodified 1038.655 0.6549643 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 1 6.33 3.77 1 2 45.515 45.515 2;3 0.0026318 10990 TMT 1-phospho 92.538 10.278 1103.8 1504 1304.2 1094.5 1250.4 1507.9 1043 1504 1339 1094 1293 1448 3 3 3 3 3 3 827640 19450 1019 19218 29907;29908;29909 38647;38648;38649 38647 3 VKPLQDQNELFGK Unmodified 1514.8093 0.80929269 1651 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 1 7 0 1 54.105 54.105 3 8.467E-06 15140 TMT1-6 109.84 88.885 122.44 200.63 170.2 121.55 145.94 217.56 116 199 174 123 152 208 1 1 1 1 1 1 17404 19451 1651 19219 29910 38650 38650 1 VKPVLLNSK Unmodified 996.63317 0.63316622 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 1 9 0 1 47.008 47.008 3 0.0039974 10601 TMT1-8 75.566 30.801 199.64 370.22 216.11 189.61 275.53 342.85 189 364 229 190 283 329 1 1 1 1 1 1 11978 19452 1098 19220 29911 38651 38651 1 VKPVLMNSK Unmodified 1014.5896 0.58958685 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 1 9 0 1 44.847 44.847 3 0.046109 9782 TMT1-8 57.492 30.978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19453 2835 19221 29912 38652 38652 1 VKPWNYTYDPK Unmodified 1409.698 0.69795133 1140 P46976;P46976-2 GYG1 Glycogenin-1 yes no 0 0 0 0 1 9 0 1 51.574 51.574 3 0.018072 12417 TMT1-8 53.967 33.096 68.415 109.17 131.04 85.411 99.425 97.367 65 109 131 87 102 94 1 1 1 1 1 1 9844 19454 1140 19222 29913 38653 38653 1 VKQELLEEVK Unmodified 1213.6918 0.69180331 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 5.5 0.5 1 1 54.896 54.896 3 0.0002701 16020 TMT1-5 107.09 70.421 281.4 459.65 646.9 420.88 560.98 706.74 268 460 642 430 578 678 2 2 2 2 2 2 38443 19455 1225 19223 29914;29915 38654;38655 38655 2 VKSPELQAEAK Unmodified 1198.6558 0.65575216 433 P02652 APOA2 Apolipoprotein A-II;Proapolipoprotein A-II;Truncated apolipoprotein A-II yes yes 0 0 0 0 1 6 0 1 39.888 39.888 3 0.00060257 10151 TMT1-5 96.591 82.912 170.45 237.56 186.15 145.48 101.54 381.93 161 237 192 145 116 361 1 1 1 1 1 1 13902 19456 433 19224 29916 38656 38656 1 VKVEHVVSVLEK Unmodified 1364.8028 0.80275075 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 1 8 0 1 50.663 50.663 4 0.00087117 13852 TMT1-7 79.633 66.205 176.5 248.99 241.86 166.24 216.21 274.19 167 249 245 169 223 263 1 1 1 1 1 1 15580 19457 2789 19225 29917 38657 38657 1 VKVEPSHDASK Unmodified 1195.6197 0.619701 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 5.5 2.22 1 1 2 1 1 30.861 30.861 3;4 4.4248E-06 6338 TMT1-4 123.95 100.34 12598 16735 15409 11144 13828 17656 11905 16769 15687 11274 14289 16933 10 10 10 10 10 10 791800 19458 831 19226 29918;29919;29920;29921;29922;29923 38658;38659;38660;38661;38662;38663;38664;38665;38666;38667 38659 10 VKVETYNDESR Unmodified 1338.6416 0.64155866 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 1 4 0 1 34.965 34.965 3 0.00090431 8294 TMT1-3 91.939 63.612 251.95 335.64 291.85 327.49 433.5 340.48 238 336 303 323 440 331 1 1 1 1 1 1 11965 19459 913 19227 29924 38668 38668 1 VKVPEVDVR Unmodified 1039.6026 0.60259438 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 1 6 0 1 44.122 44.122 3 0.020722 11824 TMT1-5 64.73 36.717 410.52 697.94 383.47 412.37 337.46 708.85 388 688 412 404 364 674 1 1 1 1 1 1 35904 19460 1632 19228 29925 38669 38669 1 VKVYGPGVAK Unmodified 1016.6019 0.6018661 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 9 0 1 42.496 42.496 3 0.0014714 8880 TMT1-8 85.958 51.426 177.04 239.71 158.18 162.46 158.88 242.78 167 239 167 160 167 232 2 2 2 2 2 2 12554 19461 831 19229 29926 38670;38671 38670 2 VLAAVYK Unmodified 762.46398 0.46397563 459;609 P04075;P04075-2;P09972;P05062 ALDOA;ALDOC;ALDOB Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase B no no 0 0 0 0 0 8.5 0.5 1 1 53.251 53.251 2 0.0078146 14953 TMT1-7 123.34 13.097 1051.5 1653.2 1313.7 1148.4 910.94 1939.7 995 1641 1358 1138 985 1844 2 2 2 2 2 2 812020 19462 459;609 19230 29927;29928 38672;38673 38672 2 VLACGLNEFNK Unmodified 1263.6282 0.6281572 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 7 0 1 60.562 60.562 3 0.00010239 17697 TMT1-6 77.379 53.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19463 2251 19231 29929 38674 38674 1 VLADPSDDTK Unmodified 1059.5084 0.50841922 1833;1346 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;P58107 PLEC;EPPK1 Plectin;Epiplakin no no 0 0 0 0 0 3 0.816 1 1 1 45.625 45.625 2;3 0.00020748 13300 TMT1-1 128.86 94.033 323.39 407.19 306.08 292.29 400.17 413.91 305 408 319 291 409 399 4 4 4 4 4 4 49362 19464 1833;1346 19232 29930;29931;29932 38675;38676;38677;38678 38675 4 VLAFLSSVAGDALTR Unmodified 1518.8406 0.84059282 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 9 0 1 90.528 90.528 3 0.0022738 27652 TMT1-8 56.527 35.489 23.356 13.88 30.185 5.4386 21.978 22.825 22 15 29 7 22 22 1 1 1 1 1 1 4408.4 19465 2308 19233 29933 38679 38679 1 VLAGDKNFITAEELR Unmodified 1674.8941 0.89408495 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 1 6 0 1 58.522 58.522 3 1.4621E-17 17476 TMT1-5 152.34 116.68 654.3 961.92 666.74 447.04 618.19 863.94 618 956 691 456 639 827 1 1 1 1 1 1 126190 19466 195 19234 29934 38680 38680 1 VLAGETLSVNDPPDVLDR Unmodified 1908.9793 0.97927114 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 4 0 1 66.755 66.755 2 5.3607E-14 20889 TMT1-3 126.83 117.88 7.3028 15.096 22.202 14.809 13.962 30.516 7 15 22 15 15 29 1 1 1 1 1 1 8678 19467 1655 19235 29935 38681 38681 1 VLALELFEQITK Unmodified 1402.8072 0.80716742 794 P19525-2;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 0 0 8 0 2 90.869 90.869 2;3 0.00023026 29334 TMT1-7 102.52 59.925 46.829 50.75 21.344 28.926 21.602 30.298 44 51 22 28 22 29 2 2 1 2 1 2 6088.6 19468 794 19236 29936;29937 38682;38683 38682 2 VLALIQAWADAFR Unmodified 1472.814 0.81398414 2063 Q6ZVM7-5;Q6ZVM7 TOM1L2 TOM1-like protein 2 yes no 0 0 0 0 0 9 0 1 105.38 105.38 2 1.5103E-09 32912 TMT1-8 121.6 90.231 7.4147 0 16.193 0 15.156 15.558 7 0 15 0 15 15 1 0 1 0 1 1 1699.9 19469 2063 19237 29938 38684 38684 1 VLALLDKPPFLTQLHSCFQTVDR Unmodified 2697.4312 0.4312423 757 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 1 9 0 1 76.067 76.067 4 2.4085E-10 22002 TMT1-8 81.312 56.114 93.212 115.37 105.99 102.24 97.588 128.33 88 116 109 101 102 123 2 2 2 2 2 2 10403 19470 757 19238 29939 38685;38686 38685 2 VLALLTK Unmodified 756.51093 0.51092582 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 67.823 67.823 2 0.01468 18781 TMT1-8 101.69 42.71 115.42 105.38 168.35 122.02 126.75 136.03 109 109 167 123 131 131 1 1 1 1 1 1 11558 19471 2061 19239 29940 38687 38687 1 VLALPEPSPAAPTLR Unmodified 1530.877 0.87697832 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7 0 1 63.785 63.785 2 1.8025E-14 18939 TMT1-6 137.01 73.846 68.968 79.411 63.297 43.117 63.949 60.003 65 80 65 44 65 58 1 1 1 1 1 1 17871 19472 1833 19240 29941 38688 38688 1 VLALPGKPPFLTQLHSCFQTMDR Unmodified 2655.3665 0.36653355 501 P05771-2;P05771 PRKCB Protein kinase C beta type yes no 0 0 0 0 1 9 0 1 69.962 69.962 4 0.0084704 19653 TMT1-8 45.011 31.823 85.204 78.704 40.126 52.305 55.647 76.23 80 80 44 51 58 73 1 1 1 1 1 1 8689.6 19473 501 19241 29942 38689 38689 1 VLALSVETDYTFPLAEK Unmodified 1894.9928 0.99279594 496 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 0 7 0 1 80.96 80.96 3 5.2382E-09 25642 TMT1-6 104.2 85.831 107.02 145.32 104.42 95.638 104.93 136.65 101 145 109 95 109 131 2 2 2 2 2 2 26502 19474 496 19242 29943 38690;38691 38690 2 VLALYNQHNPGASAAPCCVPQALEPLPIVYYVGR Unmodified 3736.8858 0.88579223 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 0 9 0 1 79.025 79.025 4 3.4559E-11 23198 TMT1-8 66.479 49.814 15.934 14.642 14.598 15.115 21.79 15.368 15 15 15 15 22 15 1 1 1 1 1 1 9365.8 19475 415 19243 29944 38692 38692 1 VLANPGNSQVAR Unmodified 1224.6575 0.65748349 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 0 7 0 1 38.154 38.154 2 1.6111E-10 8842 TMT1-6 163.84 108.75 30.546 75.073 32.271 45.397 41.05 84.109 29 73 36 44 44 80 1 1 1 1 1 1 10496 19476 1803 19244 29945 38693 38693 1 VLANQYK Unmodified 834.45995 0.45995289 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 7 0 1 42.884 42.884 2 0.0059791 10728 TMT1-6 132.94 101.64 61.472 87.523 53.828 75.579 53.258 114.67 58 87 58 73 58 109 1 1 1 1 1 1 5797.1 19477 962 19245 29946 38694 38694 1 VLAPQISFAPEIASEEER Unmodified 1985.0106 0.010571271 731 P16083 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] yes yes 0 0 0 0 0 5 0 1 70.551 70.551 3 7.0176E-06 22066 TMT1-4 81.643 67.739 38.131 58.573 33.947 29.143 28.218 22.647 36 58 36 29 29 22 1 1 1 1 1 1 7950.7 19478 731 19246 29947 38695 38695 1 VLAQNSGFDLQETLVK Unmodified 1760.9309 0.93086439 1068 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 0 6.5 0.5 2 2 69.279 69.279 2;3 4.1343E-15 21150 TMT1-6 131.32 114.3 378.42 432.55 412.6 338.04 535.94 511.31 357 437 421 341 544 494 4 4 4 4 4 4 54573 19479 1068 19247 29948;29949;29950;29951 38696;38697;38698;38699;38700 38700 5 VLAQQGEYSEAIPILR Unmodified 1785.9625 0.96249887 1772 Q14318-2;Q14318;Q14318-3 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 0 0 6 0 1 67.131 67.131 3 0.00017242 20902 TMT1-5 76.82 59.538 30.371 82.141 55.721 43.849 49 67.892 29 80 58 44 51 65 1 1 1 1 1 1 6388 19480 1772 19248 29952 38701 38701 1 VLASDAAAFLK Unmodified 1104.6179 0.61791009 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 7 0 1 68.319 68.319 2 2.7738E-11 20754 TMT1-6 136.63 111.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19481 1098 19249 29953 38702 38702 1 VLASDAAAFLKK Unmodified 1232.7129 0.71287311 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 1 9 0 1 63.019 63.019 3 0.046678 16917 TMT1-8 41.339 22.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19482 1098 19250 29954 38703 38703 1 VLATAFDTTLGGR Unmodified 1320.7038 0.70376498 1009 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 0 8 0 1 66.152 66.152 2 6.9895E-37 19947 TMT1-7 213.81 163.51 84.548 100.62 131.82 77.717 99.229 113.36 80 102 131 80 102 109 1 1 1 1 1 1 19844 19483 1009 19251 29955 38704 38704 1 VLATDFDDEFDDEEPLPAIGTCK Unmodified 2596.1527 0.15268 2449 Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 FNBP1 Formin-binding protein 1 yes no 0 0 0 0 0 3.5 0.5 1 1 79.917 79.917 3 1.4554E-09 25995 TMT1-3 88.036 74.14 7.3145 22.684 13.802 23.131 4.9097 39.302 7 22 15 22 7 37 1 1 1 1 1 1 3930 19484 2449 19252 29956;29957 38705;38706 38706 2 VLATVTKPVGGDK Unmodified 1283.7449 0.74490152 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 1 8.5 0.5 1 1 49.229 49.229 3 0.0010112 13321 TMT1-7 78.486 41.504 61.022 125.13 97.634 110.33 158.71 104.2 58 123 102 109 160 102 1 1 1 1 1 1 12024 19485 1573 19253 29958;29959 38707;38708 38707 2 VLAVEGK Unmodified 714.42759 0.42759012 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 46.454 46.454 2 0.0066206 12744 TMT1-5 79.116 12.317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19486 651 19254 29960 38709 38709 1 VLAVNQENEHLMEDYEK Unmodified 2059.9521 0.95207011 195 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 4 0 2 55.421 55.421 3 3.0709E-19 16359 TMT1-3 117.48 107.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19487 195 19255 29961;29962 38710;38711 38710 2 VLAVNQENEQLMEDYEK Unmodified 2050.9517 0.95173576 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 2.8 1.17 1 1 1 2 63.899 63.899 3;4 4.8659E-25 19567 TMT1-3 151.8 128.47 557.82 779.73 624.87 453.04 606.41 833.36 527 778 642 459 627 798 5 5 5 5 5 5 176740 19488 672 19256 29963;29964;29965;29966;29967 38712;38713;38714;38715;38716;38717 38716 6 VLAVNQENEQLMEDYEK Oxidation (M) 2066.9467 0.94665039 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 0 3.5 0.5 1 1 57.24 57.24 3 2.8213E-18 17141 TMT1-3 130.01 117.52 176.79 216.35 220.12 212.33 216.77 257.12 167 218 225 210 225 247 3 3 3 3 3 3 40198 19489 672 19256 29968;29969 38718;38719;38720 38720 126 3 VLCELADLQDKEVGDGTTSVVIIAAELLK Unmodified 3098.6421 0.64208252 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 1 6.5 0.5 1 1 100.09 100.09 4 7.3693E-14 32525 TMT1-6 91.079 74.547 46.732 50.48 37.865 48.274 44.682 65.883 44 51 40 47 47 63 4 4 4 4 4 4 4971.3 19490 770 19257 29970;29971 38721;38722;38723;38724 38723 4 VLCGGDIYVPEDPK Unmodified 1560.7494 0.74939455 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 5 0 1 61.45 61.45 3 0.023949 18628 TMT1-4 47.621 36.516 53.678 87.249 101.63 72.417 69.915 90.747 51 87 102 73 73 87 1 1 1 1 1 1 47160 19491 1171 19258 29972 38725 38725 1 VLCLAVAVGHVK Unmodified 1264.7326 0.73256269 1457 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 0 9 0 1 60.422 60.422 3 0.0004096 15896 TMT1-8 82.417 60.953 61.259 103.12 76.436 81.435 77.086 83.08 58 102 80 80 80 80 1 1 1 1 1 1 5028.1 19492 1457 19259 29973 38726 38726 1 VLCQGLK Unmodified 816.45276 0.45275902 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 8 0 1 46.968 46.968 2 0.0087362 12333 TMT1-7 115.3 56.093 500.74 665.2 577.51 365.14 548.66 652.73 473 666 588 375 562 627 2 2 2 2 2 2 54870 19493 681 19260 29974 38727;38728 38727 2 VLCTPPPK Unmodified 910.49462 0.49462383 723 P15529-16;P15529-7;P15529-4;P15529-6;P15529-3;P15529-5;P15529-2;P15529-15;P15529-9;P15529-12;P15529-14;P15529-8;P15529-11;P15529-13;P15529-10;P15529 CD46 Membrane cofactor protein yes no 0 0 0 0 0 8 0 1 44.793 44.793 2 0.0077636 11505 TMT1-7 102.72 59.692 107.82 153.14 142.67 100.74 119.08 174.62 102 153 145 102 124 167 2 2 2 2 2 2 12430 19494 723 19261 29975 38729;38730 38729 2 VLDALFPCVQGGTTAIPGAFGCGK Unmodified 2435.1977 0.19773689 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 9 0 1 84.73 84.73 4 7.8673E-11 25439 TMT1-8 77.847 57.949 107.98 129.82 136.53 100.01 119.63 159.68 102 131 138 101 124 153 2 2 2 2 2 2 15811 19495 1057 19262 29976 38731;38732 38732 2 VLDALQAIK Unmodified 969.58588 0.58588168 405 P00915 CA1 Carbonic anhydrase 1 yes yes 0 0 0 0 0 8 0 1 69.09 69.09 2 3.0103E-06 21167 TMT1-7 164.57 90.439 648 772.61 623.54 627.99 316.3 518.64 611 777 648 614 347 495 2 2 2 2 2 2 77000 19496 405 19263 29977 38733;38734 38734 2 VLDASWYSPGTR Unmodified 1350.6568 0.65681479 1904 Q16762 TST Thiosulfate sulfurtransferase yes yes 0 0 0 0 0 7 0 1 60.032 60.032 2 3.2274E-08 17457 TMT1-6 136.5 110.49 76.639 177.74 133.41 109.08 112.14 152.44 73 174 138 109 117 146 2 2 2 2 2 2 23725 19497 1904 19264 29978 38735;38736 38735 2 VLDDGELLVQQTK Unmodified 1456.7773 0.77732386 1129 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 0 4.5 0.5 1 1 64.584 64.584 3 7.4829E-06 19981 TMT1-3 105.65 82.767 99.412 117.39 144.19 115.8 127.55 121.08 94 116 145 116 131 117 2 1 2 2 2 2 31386 19498 1129 19265 29979;29980 38737;38738 38737 2 VLDEATLK Unmodified 887.4964 0.49639797 1743 Q14005-3;Q14005-2;Q14005;Q14005-4 IL16 Pro-interleukin-16;Interleukin-16 yes no 0 0 0 0 0 5 0 2 53.586 53.586 2 0.0041618 15128 TMT1-4 127.02 68.417 337.06 559.96 404.6 326.47 304.8 495.52 319 554 420 326 322 473 2 2 2 2 2 2 82979 19499 1743 19266 29981;29982 38739;38740 38739 2 VLDEFSK Unmodified 836.42798 0.42798405 149 O15498-2;O15498 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 0 5 0 1 56.055 56.055 2 0.019116 16376 TMT1-4 98.299 42.289 160.62 288.48 171.61 137.26 178.04 205.99 152 284 181 138 183 198 1 1 1 1 1 1 15066 19500 149 19267 29983 38741 38741 1 VLDELTLTK Unmodified 1030.591 0.59102664 30 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 0 6 0 1 65.655 65.655 2 0.0078833 20314 TMT1-5 91.867 39.276 139.32 112.13 113.48 103.2 81.032 152.26 131 116 116 102 87 145 1 1 1 1 1 1 9498.8 + 19501 30 19268 29984 38742 38742 1 VLDFEHFLPMLQTVAK Oxidation (M) 1902.9914 0.99135615 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 1 0 0 8.5 0.5 2 2 80.298 80.298 3;4 5.0597E-06 23363 TMT1-8 73.91 54.516 423.58 525.94 499.66 366.06 513.63 727.28 400 529 508 371 531 696 6 6 6 6 6 6 61997 19502 1356 19269 29985;29986;29987;29988 38743;38744;38745;38746;38747;38748 38746 214 6 VLDFEHFLPMLQTVAK Unmodified 1886.9964 0.99644153 1356 P60660-2;P60660 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 0 8.5 0.5 2 2 86.335 86.335 3;4 1.1179E-11 27822 TMT1-7 122.56 101.9 1406.8 1916.6 1432.8 1189.7 1419 1983.8 1328 1913 1486 1191 1474 1899 6 6 6 6 6 6 559220 19503 1356 19269 29989;29990;29991;29992 38749;38750;38751;38752;38753;38754 38751 6 VLDIIATINK Unmodified 1098.6649 0.66486028 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 8.5 0.5 1 1 75.973 75.973 2 1.4073E-05 21948 TMT1-8 137.95 93.604 108.24 114.35 105.95 102.8 126.06 181.89 102 116 109 102 131 174 2 2 2 2 2 2 14422 19504 539 19270 29993;29994 38755;38756 38756 2 VLDILLEQYPALITGR Unmodified 1813.0349 0.034935528 2777 Q9NXF1-2;Q9NXF1 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 0 8 0 1 93.45 93.45 3 0.0020954 30322 TMT1-7 61.732 40.779 15.983 14.777 6.2883 7.1494 6.7439 7.2696 15 15 7 7 7 7 1 1 1 1 1 1 1508.4 19505 2777 19271 29995 38757 38757 1 VLDLDLFR Unmodified 989.55458 0.55458155 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 7 0 1 75.847 75.847 2 0.0055907 23651 TMT1-6 116.73 85.436 176.54 248.02 235.91 179.54 224.8 280.34 167 248 240 181 232 269 2 2 2 2 2 2 62675 19506 1186 19272 29996 38758;38759 38758 2 VLDLELK Unmodified 828.49567 0.49566969 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 0 6 0 1 64.398 64.398 2 0.010552 19836 TMT1-5 107.59 15.127 721.37 1459.5 1055.1 863.61 1123.9 1053.1 685 1434 1095 867 1147 1018 1 1 1 1 1 1 114820 19507 461 19273 29997 38760 38760 1 VLDLELKGDIEK Unmodified 1370.7657 0.76569654 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 5.5 0.5 1 1 62.622 62.622 3 0.0010196 19034 TMT1-5 83.358 53.669 613.56 1091.1 550.57 553.7 662.09 874.41 580 1073 595 548 686 838 3 3 3 3 3 3 79350 19508 461 19274 29998;29999 38761;38762;38763 38762 3 VLDLQQIK Unmodified 955.57023 0.57023162 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 7 0 1 60.289 60.289 2 0.0035185 17556 TMT1-6 131.06 66.226 160.48 247.08 229.85 221.54 161.57 268.29 152 246 236 218 173 256 1 1 1 1 1 1 30516 19509 2930 19275 30000 38764 38764 1 VLDLVEVLVTK Unmodified 1226.7486 0.74858991 2511 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 0 8 0 1 92.947 92.947 3 0.00081849 30162 TMT1-7 88.596 59.638 23.235 59.953 11.499 22.824 28.508 22.639 22 58 15 22 29 22 1 1 1 1 1 1 2751.8 19510 2511 19276 30001 38765 38765 1 VLDNAIETEK Unmodified 1130.5819 0.58191851 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 4 0 1 51.916 51.916 3 0.0010796 15016 TMT1-3 90.685 61.958 184.88 208.82 128.97 154.51 209.69 236 174 210 138 152 215 227 1 1 1 1 1 1 22855 19511 1546 19277 30002 38766 38766 1 VLDNYLTSPLPEEVDETSAEDEGVSQR Unmodified 2991.3833 0.38328487 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 2.5 0.866 1 3 3 1 72.944 72.944 3;4 1.7654E-36 24181 TMT1-2 138.23 122.43 205.46 319.69 224.18 231.71 209.31 317.65 194 317 231 226 216 303 11 13 10 11 10 11 443740 19512 59 19278 30003;30004;30005;30006;30007;30008;30009;30010 38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779;38780;38781 38777 15 VLDNYLTSPLPEEVDETSAEDEGVSQRK Unmodified 3119.4782 0.47824789 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 1 3 0 1 66.627 66.627 4 2.1883E-06 21810 TMT1-2 65.155 56.428 23.298 36.384 20.854 14.589 29.934 22.598 22 36 22 15 30 22 1 1 1 1 1 1 6660 19513 59 19279 30011 38782 38782 1 VLDPFTIKPLDR Unmodified 1412.8028 0.80275075 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 1 4.5 3.5 1 1 66.279 66.279 3 1.1604E-08 19882 TMT1-7 136.01 108.46 1208.5 1895.6 1582.1 1166.7 1704.1 1786 1144 1883 1621 1183 1739 1721 3 3 3 3 3 3 272200 19514 937 19280 30012;30013 38783;38784;38785 38785 3 VLDPFTIKPLDRK Unmodified 1540.8977 0.89771377 937 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 2 9 0 1 59.698 59.698 4 0.0012958 15588 TMT1-8 77.185 50.749 308.49 496.15 391.05 331.32 264.21 635.26 292 492 404 329 288 603 1 1 1 1 1 1 20999 19515 937 19281 30014 38786 38786 1 VLDQDTDAIAVHVVR Unmodified 1649.8737 0.87368386 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 4 0 1 53.746 53.746 3 4.0357E-11 15696 TMT1-3 126.77 105.93 84.33 138.87 136.02 101.98 74.309 136.46 80 138 138 102 80 130 2 2 2 2 2 2 30746 19516 2061 19282 30015 38787;38788 38787 2 VLDSEGQLR Unmodified 1015.5298 0.52982336 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 3.5 0.5 1 1 43.121 43.121 2 0.00040211 12538 TMT1-2 138.78 78.307 177.29 209.1 142.41 193.44 188.88 211.01 167 210 152 188 196 203 2 2 2 2 2 2 44311 19517 3051 19283 30016;30017 38789;38790 38789 2 VLDSGAPIK Unmodified 898.51238 0.51238239 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 6 0 1 49.31 49.31 2 0.0005081 13944 TMT1-5 135.83 58.156 471.11 523.62 447.08 402.42 548.79 660.18 444 529 461 402 564 634 2 2 2 2 2 2 64290 19518 508 19284 30018 38791;38792 38792 2 VLDSGAPIKIPVGPETLGR Unmodified 1918.0888 0.088762013 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 1 7.33 0.471 2 1 64.776 64.776 3;4 1.856E-17 19328 TMT1-6 124.73 102.63 759.54 1008 793.01 671.68 768.99 1076 717 1008 820 671 800 1030 4 4 4 4 4 4 241690 19519 508 19285 30019;30020;30021 38793;38794;38795;38796 38794 4 VLDTNDR Unmodified 831.40865 0.4086456 657 P11586;Q6UB35 MTHFD1;MTHFD1L C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed;Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 0 0 0 0 0 3 0 1 33.829 33.829 2 0.037813 8978 TMT1-2 87.181 45.954 77.276 109.36 84.313 64.438 84.134 113.79 73 109 87 65 87 109 1 1 1 1 1 1 8082.9 19520 657 19286 30022 38797 38797 1 VLDTPLSEGDEPATLPAPR Unmodified 1977.0055 0.0054858935 651 P11277-2 SPTB Spectrin beta chain, erythrocytic yes yes 0 0 0 0 0 3.5 0.5 1 1 63.757 63.757 3 1.8875E-30 20784 TMT1-2 142.35 126.04 76.469 71.316 71.754 57.647 78.18 83.049 72 73 73 58 80 80 2 2 2 2 2 2 17005 19521 651 19287 30023;30024 38798;38799 38798 2 VLDVNLMGTFNVIR Unmodified 1589.8599 0.85994805 2485 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 0 9 0 1 80.901 80.901 2 1.9657E-09 23909 TMT1-8 115.34 73.767 37.962 34.36 82.828 33.195 64.661 52.521 36 36 80 36 65 51 1 1 1 1 1 1 11023 19522 2485 19288 30025 38800 38800 1 VLEAAVAAK Unmodified 870.51747 0.51746776 1764 Q14232-2;Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 0 0 6 0 1 52.366 52.366 2 0.0041734 15083 TMT1-5 100.02 6.5886 215.85 313.3 246.23 195.64 208.08 319.19 204 312 254 196 218 305 2 2 2 2 2 2 10742 19523 1764 19289 30026 38801;38802 38802 2 VLEALELYNK Unmodified 1190.6547 0.65468953 308 O75886 STAM2 Signal transducing adapter molecule 2 yes yes 0 0 0 0 0 7 0 1 71.887 71.887 3 0.0004327 22141 TMT1-6 100.02 73.344 100.11 53.614 80.615 49.91 54.695 107.17 94 58 80 51 58 102 1 1 1 1 1 1 6646.2 19524 308 19290 30027 38803 38803 1 VLEALLPLK Unmodified 994.64267 0.64266828 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 8.5 0.5 1 1 77.547 77.547 2 0.015337 24461 TMT1-7 81.594 48.474 131.45 159.14 133.94 116.01 148.76 142.86 124 160 138 116 152 138 2 2 2 2 2 2 12532 19525 1176 19291 30028;30029 38804;38805 38804 2 VLEAMTER Unmodified 947.47462 0.47461667 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 4 0 1 48.833 48.833 2 0.040401 13772 TMT1-3 77.282 28.721 218.19 350.4 181.3 218.4 249.86 442.72 206 346 197 214 263 422 1 1 1 1 1 1 33533 19526 228 19292 30030 38806 38806 1 VLECFHR Unmodified 959.46472 0.46472069 1898 Q16644 MAPKAPK3 MAP kinase-activated protein kinase 3 yes yes 0 0 0 0 0 6 0 1 40.069 40.069 3 7.1242E-05 10209 TMT1-5 117.93 78.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19527 1898 19293 30031 38807 38807 1 VLEDGTPFWSGPK Unmodified 1431.7034 0.70343063 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 7 0 1 67.977 67.977 3 3.8301E-05 20613 TMT1-6 100.38 94.653 68.92 71.722 77.951 88.864 84.074 82.881 65 73 80 87 87 80 1 1 1 1 1 1 11691 19528 1081 19294 30032 38808 38808 1 VLEDPAIASDESFGAVK Unmodified 1746.8676 0.86759543 359 O95544-3;O95544;O95544-2 NADK NAD kinase yes no 0 0 0 0 0 4 0 1 66.604 66.604 3 1.6982E-05 20801 TMT1-3 64.507 44.401 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19529 359 19295 30033 38809 38809 1 VLEDRPLSDK Unmodified 1170.6245 0.62445203 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 3.5 1.5 1 2 1 43.158 43.158 2;3 0.00012775 11171 TMT1-4 120.96 74.987 5964.7 8092.7 7581.3 6016.1 7984.7 8352.4 5639 8103 7731 6055 8172 8049 6 6 6 6 6 6 1318000 19530 484 19296 30034;30035;30036;30037 38810;38811;38812;38813;38814;38815 38814 6 VLEDSDLK Unmodified 917.47058 0.47057715 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 3 0.894 2 1 2 50.63 50.63 2;3 0.0031117 14336 TMT1-3 91.853 39.989 1242.7 1467.9 1251.4 1026.3 1265.2 1473.4 1172 1478 1286 1029 1303 1416 6 6 6 6 6 6 371680 19531 640 19297 30038;30039;30040;30041;30042 38816;38817;38818;38819;38820;38821 38820 6 VLEDSDLKK Unmodified 1045.5655 0.56554017 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5 0 1 46.447 46.447 3 0.0077412 12575 TMT1-4 76.143 38.951 1141.8 1639 1286.3 1189.4 1375.9 1566.1 1079 1633 1334 1182 1419 1506 2 2 2 2 2 2 100380 19532 640 19298 30043 38822;38823 38822 2 VLEEANQAINPK Unmodified 1324.6987 0.69867961 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 5 0 1 53.628 53.628 3 0.00028534 15410 TMT1-4 89.805 63.687 184.47 238.96 173.06 168.76 184.01 172.77 174 239 181 167 189 167 1 1 1 1 1 1 32012 19533 2321 19299 30044 38824 38824 1 VLEEEEQR Unmodified 1030.4931 0.49310351 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 1.5 0.5 1 1 35.993 35.993 2 0.0052305 9458 TMT1-1 119.41 75.599 271.7 275.1 269.06 213.97 265.47 329.28 256 280 274 215 274 316 3 3 3 3 3 3 43322 19534 1597 19300 30045;30046 38825;38826;38827 38827 3 VLEEEEQRR Unmodified 1186.5942 0.59421454 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 1 2 0 1 30.486 30.486 3 0.00055355 7136 TMT1-1 113.62 67.232 155.22 134.23 128.03 109.56 103.48 160.15 146 138 131 109 109 153 2 2 2 2 2 2 19180 19535 1597 19301 30047 38828;38829 38828 2 VLEEGGFFEEK Unmodified 1282.6081 0.60813326 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 4 0 2 64.205 64.205 2;3 2.9542E-23 19892 TMT1-3 196.27 132.23 955.95 905.35 1052.1 899.25 865.94 1146.8 901 928 1064 895 905 1099 2 2 2 2 2 2 150310 19536 2718 19302 30048;30049 38830;38831 38831 2 VLEEGSVEAR Unmodified 1087.551 0.55095274 2385 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 0 0 2 0 1 41.194 41.194 2 0.0042382 11401 TMT1-1 93.598 73.811 92.397 101.05 74.625 121.37 51.702 98.729 87 102 80 116 58 94 1 1 1 1 1 1 21033 19537 2385 19303 30050 38832 38832 1 VLEEHGEWWK Unmodified 1311.6248 0.62478638 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 5 0 1 55.394 55.394 3 8.486E-05 16134 TMT1-4 117.52 97.879 214.67 357.34 225.77 182.75 202.71 248.99 203 353 237 183 210 239 1 1 1 1 1 1 26609 19538 550 19304 30051 38833 38833 1 VLEELEGVR Unmodified 1042.5659 0.56587452 1097 P42356 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 0 0 0 0 0 2.5 0.5 1 1 60.634 60.634 2 0.0065255 19162 TMT1-1 94.85 40.693 92.39 108.59 69.45 57.351 101.23 82.391 87 109 73 58 102 80 2 2 2 2 2 2 8195.2 19539 1097 19305 30052;30053 38834;38835 38834 2 VLEELHK Unmodified 866.48617 0.48616764 595 P09493-8 no no 0 0 0 0 0 3 2 1 1 46.688 46.688 3 0.0021628 12490 TMT1-4 105.04 31.065 624.04 790.89 1027.2 483.04 816.17 746.36 591 799 1016 512 826 722 3 3 3 3 3 3 87886 19540 595 19306 30054;30055 38836;38837;38838 38837 3 VLEELHKAEDSLLAAEEAAAK Unmodified 2236.1587 0.15869207 595 P09493-8 no no 0 0 0 0 1 4.5 0.5 1 1 78.633 78.633 4 2.1768E-31 25026 TMT1-4 149.53 125.89 445.75 484.56 594.14 338.69 391.01 527.17 421 493 592 349 406 505 5 5 5 5 5 5 28750 19541 595 19307 30056;30057 38839;38840;38841;38842;38843 38841 5 VLEEQLVK Unmodified 956.55425 0.5542472 2574 Q9BYC5-2;Q9BYC5 FUT8 Alpha-(1,6)-fucosyltransferase yes no 0 0 0 0 0 5 0 1 54.606 54.606 2 0.0085835 15833 TMT1-4 101.64 16.9 115.87 106.63 91.868 64.16 74.949 168.42 109 109 94 65 80 160 1 1 1 1 1 1 7252.9 19542 2574 19308 30058 38844 38844 1 VLEGMEVVR Unmodified 1030.5481 0.54811597 858 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 0 5 0 1 54.801 54.801 2 0.00013598 15906 TMT1-4 148.99 92.266 366.34 360.27 521.16 307.2 495 739.54 346 370 516 318 511 707 1 1 1 1 1 1 94805 19543 858 19309 30059 38845 38845 1 VLEGSELELAK Unmodified 1186.6445 0.64451877 1805 Q14980-2;Q14980;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 60.796 60.796 2 0.013382 18247 TMT1-4 76.282 64.434 38.151 43.521 43.228 35.4 72.936 52.285 36 44 44 36 73 51 1 1 1 1 1 1 6370.6 19544 1805 19310 30060 38846 38846 1 VLEILGK Unmodified 770.49019 0.49019038 1117 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 0 8 0 1 66.509 66.509 2 0.010436 20069 TMT1-7 108.09 6.564 108.3 138.28 74.848 64.41 115.56 81.982 102 138 80 65 116 80 1 1 1 1 1 1 16472 19545 1117 19311 30061 38847 38847 1 VLELDNVK Unmodified 928.52295 0.52294707 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 5 0 1 56.758 56.758 2 0.0057253 16600 TMT1-4 114.89 51.329 138.2 242.85 191.07 128.71 164.27 222.37 131 240 196 131 170 213 1 1 1 1 1 1 34010 19546 956 19312 30062 38848 38848 1 VLELDPALAPVVSR Unmodified 1477.8504 0.85042922 46 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 0 6 0 1 71.735 71.735 3 0.0023049 22666 TMT1-5 65.219 38.432 15.709 45.313 26.537 45.872 33.956 76.849 15 44 29 44 37 73 1 1 1 1 1 1 10266 19547 46 19313 30063 38849 38849 1 VLELPYQGEELSMVILLPDDIEDESTGLK Unmodified 3244.6312 0.63124306 967 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 0 0 5 0 1 99.363 99.363 4 2.0494E-06 32829 TMT1-4 64.16 57.584 5.2765 12.338 4.4198 5.0138 9.9832 7.1771 5 12 5 5 10 7 1 1 1 1 1 1 1916.5 19548 967 19314 30064 38850 38850 1 VLELVSITANK Unmodified 1185.6969 0.69688869 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 71.059 71.059 2;3 4.1478E-06 20067 TMT1-8 119.22 72.332 77.154 125.21 91.331 79.862 113.5 121.48 73 124 95 80 116 117 2 2 2 2 2 2 15587 19549 1006 19315 30065;30066 38851;38852 38852 2 VLENAEGAR Unmodified 957.48796 0.48795855 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 2.5 0.5 1 1 35.653 35.653 2 0.00010672 9471 TMT1-2 150.36 119.86 254.9 311.84 175.94 192.12 211.17 233.82 240 312 189 189 218 225 3 3 3 3 3 3 37308 19550 1058 19316 30067;30068 38853;38854;38855 38855 3 VLENIELNKK Unmodified 1198.6921 0.69213767 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 1 7 0 1 52.81 52.81 3 0.00010422 14617 TMT1-6 122.7 60.236 450.6 657.61 534.06 457.79 583.71 665.58 426 655 551 458 600 640 1 1 1 1 1 1 30316 19551 2953 19317 30069 38856 38856 1 VLEPYPSK Unmodified 931.50148 0.50148335 2829 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 49.296 49.296 2 0.0056262 13870 TMT1-5 73.665 31.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19552 2829 19318 30070 38857 38857 1 VLEQLTGQTPVFSK Unmodified 1545.8403 0.84025847 1459 P62913-2;P62913 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 0 8 0 2 69.224 69.224 2;3 1.64E-14 21152 TMT1-7 139.78 105.09 123.78 214.23 115.23 122.51 269.14 161.81 117 211 124 123 268 159 2 2 2 2 2 2 96159 19553 1459 19319 30071;30072 38858;38859 38858 2 VLESVVADLLNR Unmodified 1326.7507 0.75071518 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 7 0 2 88.052 88.052 2 7.7391E-08 28288 TMT1-6 108.7 79.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19554 2064 19320 30073;30074 38860;38861 38860 2 VLETEEVYSHK Unmodified 1332.6561 0.65614609 1010 P34947 GRK5 G protein-coupled receptor kinase 5 yes yes 0 0 0 0 0 4 0 1 45.769 45.769 3 2.4804E-05 12604 TMT1-3 88.596 79.164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19555 1010 19321 30075 38862 38862 1 VLETFLAK Unmodified 919.53787 0.53786886 1769 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 0 0 8 0 1 69.067 69.067 2 0.0043746 21090 TMT1-7 125.5 27.902 91.308 263.15 120.3 116.53 163.92 157.35 87 255 131 116 167 152 1 1 1 1 1 1 20211 19556 1769 19322 30076 38863 38863 1 VLETTVEIFNK Unmodified 1291.7024 0.702368 2444 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 0 6.5 0.5 1 1 72.112 72.112 3 1.9525E-07 22824 TMT1-5 106.29 76.624 46.314 95.727 69.724 73.733 101.02 66.407 44 94 73 73 102 65 1 1 1 1 1 1 18676 19557 2444 19323 30077;30078 38864;38865 38864 2 VLEVYTTQPGVQFYTGNFLDGTLK Unmodified 2689.3639 0.36393382 2377 Q96C23 GALM Aldose 1-epimerase yes yes 0 0 0 0 0 8 0 1 85.666 85.666 4 0.00018158 27482 TMT1-7 53.444 39.572 38.18 58.709 25.611 46.065 26.633 46.144 36 58 29 44 29 44 1 1 1 1 1 1 6977.8 19558 2377 19324 30079 38866 38866 1 VLFETDLVNPR Unmodified 1301.698 0.69795133 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 6 0 1 65.588 65.588 2 1.6528E-05 20287 TMT1-5 121.83 94.7 185.04 131.56 167.14 106.24 156.26 181.02 174 138 167 109 160 174 1 1 1 1 1 1 26718 19559 704 19325 30080 38867 38867 1 VLFEYIPQNEDELELK Unmodified 1977.9935 0.99352422 3029 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 0 5 0 2 79.343 79.343 3;4 6.715E-09 25498 TMT1-4 112.17 95.293 61.356 155.72 111.64 94.759 128.77 113.59 58 152 116 95 131 110 2 3 3 3 3 3 16117 19560 3029 19326 30081;30082 38868;38869;38870 38868 3 VLFGFVPETK Unmodified 1135.6277 0.6277465 799 P19878-3;P19878;P19878-4;P19878-2 NCF2 Neutrophil cytosol factor 2 yes no 0 0 0 0 0 9 0 1 72.573 72.573 2 1.2822E-05 20662 TMT1-8 138.98 72.293 68.589 140.96 74.894 64.279 122.38 96.712 65 138 80 65 123 94 1 1 1 1 1 1 10710 19561 799 19327 30083 38871 38871 1 VLFLIPK Unmodified 828.54731 0.54731133 3054;2825 Q9P289;Q9P289-2;Q9Y6E0-2;Q9Y6E0 STK26;STK24 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 0 0 0 0 0 9 0 1 73.374 73.374 2 0.013299 20938 TMT1-8 109.88 58.915 698.11 997.45 846.96 793.44 923.23 1143.1 660 995 874 788 955 1097 2 2 2 2 2 2 91053 19562 2825;3054 19328 30084 38872;38873 38872 2 VLFLLGADGGCITR Unmodified 1490.7915 0.79153413 929 P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 0 9 0 1 76.343 76.343 2 2.4239E-07 22189 TMT1-8 109.6 57.019 30.455 43.519 74.361 41.767 42.536 45.69 29 44 73 43 44 44 1 1 1 1 1 1 10267 19563 929 19329 30085 38874 38874 1 VLFPATGYLSIVWK Unmodified 1592.8967 0.89665113 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 2 88.681 88.681 2;3 2.1145E-11 26932 TMT1-8 117.14 81.912 85.316 55.27 41.25 58.629 122.64 96.704 80 58 44 58 123 94 1 1 1 1 1 1 8811.1 19564 1176 19330 30086;30087 38875;38876 38876 2 VLFPLLTK Unmodified 929.59499 0.5949898 2297 Q92538-3;Q92538-2;Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes no 0 0 0 0 0 9 0 1 76.214 76.214 2 0.0072752 22100 TMT1-8 96.253 61.147 53.883 95.375 60.306 90.473 54.442 60.274 51 94 65 87 58 58 1 1 1 1 1 1 5230 19565 2297 19331 30088 38877 38877 1 VLFPVNLQLGAK Unmodified 1297.7758 0.77580772 767 P17927 CR1 Complement receptor type 1 yes no 0 0 0 0 0 9 0 1 75.39 75.39 3 0.00025491 21781 TMT1-8 87.568 60.264 30.566 58.938 42.654 28.358 42.383 68.081 29 58 44 29 44 65 1 1 1 1 1 1 3517.7 19566 767 19332 30089 38878 38878 1 VLFSSNGGVVK Unmodified 1105.6132 0.61315906 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 7 0 1 58.667 58.667 2 0.028115 16990 TMT1-6 66.692 33.851 84.641 132.18 89.428 88.066 90.12 121.08 80 131 94 87 94 116 1 1 1 1 1 1 20156 19567 901 19333 30090 38879 38879 1 VLFTSLADNK Unmodified 1106.5972 0.59717465 2224 Q8NF91-4;Q8NF91;Q8NF91-8;Q8NF91-2 SYNE1 Nesprin-1 yes no 0 0 0 0 0 8 0 1 61.078 61.078 2 0.0075716 17973 TMT1-7 57.598 35.451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19568 2224 19334 30091 38880 38880 1 VLGAFSDGLAHLDNLK Unmodified 1668.8835 0.88352026 1497;428 P02042;P68871 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 0 7.2 2.18 1 3 4 2 71.643 71.643 2;3;4 1.3067E-65 20659 TMT1-8 226.93 165.82 6914.9 6700.9 5597.9 4482.3 2140.5 3586.8 6507 6824 5762 4443 2361 3422 15 15 15 15 15 15 870060 19569 428;1497 19335 30092;30093;30094;30095;30096;30097;30098;30099;30100;30101 38881;38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893;38894;38895;38896 38895 16 VLGAHILGPGAGEMVNEAALALEYGASCEDIAR Unmodified 3353.6384 0.6384109 600 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 83.835 83.835 4 2.0447E-44 27449 TMT1-5 131.94 121.04 15.904 22.111 13.41 31.733 13.697 15.599 15 22 15 30 15 15 1 1 1 1 1 1 7136.2 19570 600 19336 30102 38897 38897 1 VLGALLPFLDAQYQK Unmodified 1674.9345 0.9344932 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 90.564 90.564 3 1.5188E-06 27635 TMT1-8 96.059 74.186 30.851 28.432 20.56 31.045 27.617 37.588 29 29 22 30 29 36 1 1 1 1 1 1 4971.2 19571 1999 19337 30103 38898 38898 1 VLGATLLPDLIQK Unmodified 1379.8388 0.8388019 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 9 0 1 79.635 79.635 3 5.8103E-12 23390 TMT1-8 130.56 96.485 177.59 171.09 123.64 155.73 161.57 173.41 167 174 131 152 167 167 2 2 2 2 2 2 27892 19572 1324 19338 30104 38899;38900 38899 2 VLGEAMTGISQNAK Unmodified 1417.7235 0.72351415 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.5 2.69 1 1 1 1 57.883 57.883 3 8.7852E-20 16611 TMT1-6 166.45 134.38 1092.7 1280 1195.1 956.17 1105.3 1625 1031 1291 1220 959 1152 1554 6 6 6 6 6 6 302620 19573 3010 19339 30105;30106;30107;30108 38901;38902;38903;38904;38905;38906 38904 6 VLGEAMTGISQNAK Oxidation (M) 1433.7184 0.71842877 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 7 0 1 48.21 48.21 4 0.0070819 12806 TMT1-6 56.956 51.232 61.194 86.748 101.31 79.517 100.21 82.421 58 87 102 80 102 80 1 1 1 1 1 1 4862.8 19574 3010 19339 30109 38907 38907 343 1 VLGELWPLFGGR Unmodified 1342.7398 0.73975656 928 P28288-2;P28288 ABCD3 ATP-binding cassette sub-family D member 3 yes no 0 0 0 0 0 9 0 1 87.137 87.137 2 6.4011E-06 26329 TMT1-8 99.815 70.342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19575 928 19340 30110 38908 38908 1 VLGGSFADQK Unmodified 1020.524 0.52400971 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 7 0 1 51.433 51.433 2 0.0036206 14076 TMT1-6 95.573 46.155 68.534 93.316 124.38 62.043 84.501 106.32 65 94 123 65 87 102 1 1 1 1 1 1 7029.5 19576 2338 19341 30111 38909 38909 1 VLGITDMFDSSK Unmodified 1311.6381 0.63805318 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 7 0 1 73.828 73.828 2 0.00026533 22939 TMT1-6 102.05 71.73 45.457 57.547 65.798 43.381 41.949 60.631 43 58 66 44 44 58 1 1 1 1 1 1 8457.9 19577 525 19342 30112 38910 38910 1 VLGIYTFTK Unmodified 1040.5906 0.59063271 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 62.598 62.598 2 0.020699 16696 TMT1-8 73.26 19.103 240.57 273.96 271.72 183.64 358.71 182.71 227 277 275 189 357 181 1 1 1 1 1 1 107040 19578 1977 19343 30113 38911 38911 1 VLGKDHPDVAK Unmodified 1177.6455 0.64552182 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 1 6 0 1 38.226 38.226 4 0.0021537 9461 TMT1-5 78.908 57.955 115 198.09 161.4 153.34 168.65 183.87 109 196 167 152 174 177 1 1 1 1 1 1 7714.8 19579 1613 19344 30114 38912 38912 1 VLGLVLLR Unmodified 881.60622 0.60622319 709 P14678-2;P63162;P14678;P63162-2;P14678-3 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 0 9 0 1 72.453 72.453 2 0.010994 20671 TMT1-8 88.591 46.116 129.69 257.65 167.14 161.09 203.6 252.16 123 253 176 160 210 242 1 1 1 1 1 1 38103 19580 709 19345 30115 38913 38913 1 VLGMDPLPSK Unmodified 1055.5685 0.56851706 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 7 0 1 62.332 62.332 2 0.0032091 18391 TMT1-6 96.89 48.952 92.052 154.05 87.745 95.548 104.42 151.59 87 152 94 94 109 145 1 1 1 1 1 1 13583 19581 1655 19346 30116 38914 38914 1 VLGMTLIQK Unmodified 1001.5943 0.59433788 1586 Q04760-2;Q04760 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 0 9 0 1 65.357 65.357 3 0.00025194 17843 TMT1-8 119.29 119.29 154.45 118.96 89.54 95.441 104.42 151.59 145 123 94 94 109 145 1 1 1 1 1 1 12567 19582 1586 19347 30117 38915 38915 1 VLGPCSDILK Unmodified 1100.59 0.58998078 635 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 0 0 0 0 0 7 0 1 59.365 59.365 2 0.00042429 17247 TMT1-6 118.18 73.73 208.04 215.67 198.22 191.3 300.36 287.78 196 219 204 191 305 278 1 1 1 1 1 1 30906 19583 635 19348 30118 38916 38916 1 VLGPYTFSICDTSNFSDYIR Unmodified 2354.0889 0.088897947 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 8 0 1 82.17 82.17 3 8.2748E-18 26175 TMT1-7 123.19 101.84 46.314 95.727 69.767 72.785 93.189 82.621 44 94 73 72 95 80 2 2 2 2 2 2 39551 19584 845 19349 30119 38917;38918 38917 2 VLGSEPAPVSAETLLSQAVEQLR Unmodified 2393.2802 0.28020419 2252 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 0 6.5 0.5 1 1 87.477 87.477 3 2.8931E-09 28141 TMT1-6 84.324 71.287 23.037 44.293 58.011 44.264 19.68 37.814 22 44 58 44 22 36 2 2 2 2 2 2 11677 19585 2252 19350 30120;30121 38919;38920 38920 2 VLGSIAGK Unmodified 743.45414 0.45413923 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 0 9 0 1 50.779 50.779 2 0.0066201 12097 TMT1-8 89.55 22.868 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19586 1785 19351 30122 38921 38921 1 VLGSLEALEPVHYEEK Unmodified 1811.9305 0.93053004 908 P27338 MAOB Amine oxidase [flavin-containing] B yes yes 0 0 0 0 0 5 0 1 66.834 66.834 3 3.8031E-07 20557 TMT1-4 101.71 75.271 207.4 244.11 281.93 192.6 256.69 217.6 196 247 283 196 261 211 3 3 3 3 3 3 17269 19587 908 19352 30123 38922;38923;38924 38922 3 VLGTAFDPFLGGK Unmodified 1320.7078 0.70778773 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 9 0 1 76.792 76.792 2 1.0031E-08 22319 TMT1-8 115.29 83.865 30.699 51.752 26.465 37.119 34.667 37.387 29 51 29 36 36 36 1 1 1 1 1 1 7588.6 19588 2303 19353 30124 38925 38925 1 VLGTEDLYDYIDKYNIELDPR Unmodified 2543.2431 0.24314998 1494 P68400;P68400-2 CSNK2A1 Casein kinase II subunit alpha yes no 0 0 0 0 1 6 0 1 80.757 80.757 3 0.0060104 26248 TMT1-5 47.68 34.622 30.65 51.617 34.733 21.714 13.901 23.055 29 51 36 22 15 22 1 1 1 1 1 1 4669.9 19589 1494 19354 30125 38926 38926 1 VLGTEELYGYLK Unmodified 1383.7286 0.72858275 796 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 0 6.5 0.5 1 1 71.214 71.214 3 0.00013471 21885 TMT1-6 72.34 50.142 46.547 65.074 56.667 43.773 50.066 36.947 44 65 58 44 51 36 1 1 1 1 1 1 5614 19590 796 19355 30126;30127 38927;38928 38928 2 VLGTPVETIELTEDRR Unmodified 1826.9738 0.97379183 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 1 4 0 1 58.11 58.11 3 0.030467 17416 TMT1-3 46.318 28.18 38.013 74.436 40.274 60.086 48.254 67.913 36 73 44 58 51 65 1 1 1 1 1 1 12277 19591 917 19356 30128 38929 38929 1 VLGVFGELDLHGIPHSIYK Unmodified 2093.131 0.13096118 2121 Q86WI1 PKHD1L1 Fibrocystin-L yes yes 0 0 0 0 0 8 0 1 71.863 71.863 4 3.9309E-10 22203 TMT1-7 100.35 83.275 61.387 94.839 62.064 50.868 62.53 90.958 58 94 65 51 65 87 1 1 1 1 1 1 11024 19592 2121 19357 30129 38930 38930 1 VLGVLEVSR Unmodified 970.58113 0.58113065 2610 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 0 7 0 1 59.764 59.764 2 0.0019215 17389 TMT1-6 110.22 91.815 77.278 109.36 83.94 72.787 106.27 128.09 73 109 87 73 109 123 1 1 1 1 1 1 12012 19593 2610 19358 30130 38931 38931 1 VLHAEQEK Unmodified 952.49779 0.49779495 1973 Q5T1M5 FKBP15 FK506-binding protein 15 yes yes 0 0 0 0 0 4 0 1 31.522 31.522 3 0.0012493 7006 TMT1-3 105.14 63.633 77.178 109.08 100.94 55.916 77.746 97.985 73 109 102 58 80 94 1 1 1 1 1 1 9659.9 19594 1973 19359 30131 38932 38932 1 VLHEAEGHIVTCETNTGEVYR Unmodified 2413.1332 0.13322238 1434 P62318-2;P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 0 3 0 2 44.069 44.069 3;4 2.095E-18 13005 TMT1-2 124.18 111.25 69.715 141.03 65.835 97.387 76.096 90.571 66 138 73 94 80 87 2 2 2 2 2 2 92356 19595 1434 19360 30132;30133 38933;38934 38934 2 VLHFYNVK Unmodified 1018.56 0.56000128 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 9 0 1 49.786 49.786 3 0.0082747 11697 TMT1-8 63.486 29.233 139.15 150.51 109.8 134.3 124.54 184.06 131 152 116 131 131 176 1 1 1 1 1 1 10452 19596 1293 19361 30134 38935 38935 1 VLHGEQYLELYKPLPR Unmodified 1954.0676 0.06763264 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 8 0 2 57.129 57.129 3;4 1.798E-08 16418 TMT1-7 109.79 97.875 278.35 374.72 329.7 272.4 220.92 360.4 263 375 338 271 235 344 2 2 2 2 2 2 96958 19597 1250 19362 30135;30136 38936;38937 38936 2 VLHVSENPVPLTVR Unmodified 1558.8831 0.88312633 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 7 0 1 51.311 51.311 3 0.008222 14040 TMT1-6 38.995 18.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19598 2166 19363 30137 38938 38938 1 VLHYLAIQKPADLAR Unmodified 1706.9832 0.98317473 1819 Q15042-3;Q15042;Q15042-4 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes no 0 0 0 0 1 9 0 1 55.934 55.934 4 0.044142 14084 TMT1-8 44.294 13.565 76.687 177.87 125.15 124.3 142.37 104.67 73 174 131 123 145 102 1 1 1 1 1 1 6839 19599 1819 19364 30138 38939 38939 1 VLIAAHGNSLR Unmodified 1149.6618 0.66184059 782 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 0 9 0 1 38.739 38.739 2 0.0001341 7695 TMT1-8 105.36 78.238 15.56 44.9 51.834 12.914 20.828 46.31 15 44 51 15 22 44 1 1 1 1 1 1 3560 19600 782 19365 30139 38940 38940 1 VLIALLAR Unmodified 867.59057 0.59057313 2198 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 0 9 0 1 73.307 73.307 2 0.020928 20931 TMT1-8 77.72 29.546 53.921 72.813 73.151 26.814 27.812 37.582 51 73 73 29 29 36 1 1 1 1 1 1 6701 19601 2198 19366 30140 38941 38941 1 VLIDLIQR Unmodified 968.60187 0.6018661 2630 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 0 0 0 0 0 8 0 1 68.76 68.76 2 0.02794 21055 TMT1-7 83.265 51.137 84.987 85.653 70.853 57.592 83.936 128.72 80 87 73 58 87 123 1 1 1 1 1 1 23924 19602 2630 19367 30141 38942 38942 1 VLIEGSINSVR Unmodified 1185.6717 0.67173657 1351 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 0 6.67 0.471 1 2 53.361 53.361 2;3 1.5057E-24 15425 TMT1-5 204.64 138.76 631.4 805.77 679.82 609.18 556.89 817.72 596 808 701 604 586 782 4 4 4 4 4 4 234620 19603 1351 19368 30142;30143;30144 38943;38944;38945;38946 38943 4 VLIEILCTR Unmodified 1115.6373 0.63726532 804 P20073-2;P20073 ANXA7 Annexin A7 yes no 0 0 0 0 0 9 0 1 72.583 72.583 2 8.7598E-10 20683 TMT1-8 175.91 132.99 280.8 258.67 196.67 135.64 184.64 229.25 264 264 203 138 190 220 1 1 1 1 1 1 37895 19604 804 19369 30145 38947 38947 1 VLIFQEENEIPASVFVK Unmodified 1961.051 0.050979523 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6.5 0.5 1 1 81.537 81.537 3 1.2976E-10 26057 TMT1-6 115.5 82.194 967.37 1143.4 1275.6 902.61 1024.6 1455.7 914 1156 1284 913 1067 1393 5 5 5 5 5 5 472010 19605 372 19370 30146;30147 38948;38949;38950;38951;38952 38952 5 VLIFSQMTK Unmodified 1065.5893 0.5892525 1800 Q14839;Q14839-2;Q8TDI0;Q12873-2;Q12873;Q12873-3 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 0 0 9 0 1 66.604 66.604 2 0.021175 18355 TMT1-8 72.275 23.479 54.034 80.684 47.398 59.952 32.811 60.892 51 80 51 58 36 58 1 1 1 1 1 1 3987.6 19606 1800 19371 30148 38953 38953 1 VLILDEATSALDVQCEQALQDWNSR Unmodified 2873.3865 0.38653653 1579 Q03519 TAP2 Antigen peptide transporter 2 yes yes 0 0 0 0 0 5 0 1 86.986 86.986 3 1.5882E-10 28479 TMT1-4 73.546 67.323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19607 1579 19372 30149 38954 38954 1 VLISNLLDLLTEVGVSGQGR Unmodified 2082.1685 0.1684689 2642 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 0 9 0 1 107.77 107.77 3 1.7793E-46 33534 TMT1-8 171.04 152.62 9.569 12.046 4.5739 15.673 23.895 14.242 9 12 5 15 24 14 2 2 1 2 2 2 7524.7 19608 2642 19373 30150 38955;38956 38955 2 VLISSLQDCLHGIESK Unmodified 1797.9295 0.92948418 1896 Q16630-3;Q16630;Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 0 8 0 1 69.313 69.313 3 0.00024285 21249 TMT1-7 75.574 55.206 23.122 44.529 43.552 28.452 34.516 53.381 22 44 44 29 36 51 1 1 1 1 1 1 6775.7 19609 1896 19374 30151 38957 38957 1 VLISTDVWAR Unmodified 1158.6397 0.63970816 1059 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 0 8 0 1 64.133 64.133 2 0.015344 19137 TMT1-7 78.264 32.546 77.064 147.62 87.462 112.25 88.751 128.59 73 145 94 109 94 123 1 1 1 1 1 1 26813 19610 1059 19375 30152 38958 38958 1 VLITTDLLAR Unmodified 1113.6758 0.67575932 1358;1765 P60842;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 0 8.5 0.5 1 1 66.959 66.959 2 6.9552E-29 20255 TMT1-7 211.85 137.02 366.57 690.44 563.81 435.3 522.88 639.6 348 681 579 438 540 614 3 3 3 3 3 3 140930 19611 1358;1765 19376 30153;30154 38959;38960;38961 38959 3 VLIVSEDPELPYMRPPLSK Unmodified 2182.1708 0.17077708 373 O95831-3;O95831;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 1 7 0 1 70.66 70.66 4 0.0092991 21682 TMT1-6 46.027 30.084 61.374 126.1 37.75 44.508 70.942 98.18 58 123 44 44 73 94 1 1 1 1 1 1 6787.3 19612 373 19377 30155 38962 38962 1 VLIVYAHQEPK Unmodified 1295.7238 0.72377215 731 P16083 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] yes yes 0 0 0 0 0 8 0 1 47.767 47.767 3 6.2792E-05 12721 TMT1-7 81.017 57.412 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19613 731 19378 30156 38963 38963 1 VLKDQPPNSVEGLLNALR Unmodified 1962.0898 0.089824645 2751 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 1 8 0 1 70.67 70.67 3 1.4931E-10 21721 TMT1-7 114.58 88.142 115.44 160.47 119.05 85.87 113 127.89 109 160 123 87 116 123 1 1 1 1 1 1 24222 19614 2751 19379 30157 38964 38964 1 VLKGDVEK Unmodified 886.51238 0.51238239 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 1 7 0 1 41.233 41.233 3 0.01251 10100 TMT1-6 78.516 47.227 1501.2 2011.6 1353.5 1398.4 1323.2 2117.7 1416 2007 1427 1376 1396 2022 1 1 1 1 1 1 132950 19615 1380 19380 30158 38965 38965 1 VLKQVHPDTGISSK Unmodified 1507.8358 0.83584179 239;524;2168;2498 P62807;O60814;Q99879;Q99877;Q93079;Q5QNW6;P58876;P57053;Q5QNW6-2;Q16778;P06899;P33778;P23527;Q8N257;Q99880;Q96A08 HIST1H2BC;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BD;H2BFS;HIST2H2BE;HIST1H2BJ;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 1 8 0 1 41.245 41.245 4 0.013343 10095 TMT1-7 52.823 31.523 485.21 456.16 479.23 668.69 701.78 600.39 457 467 498 650 720 582 1 1 1 1 1 1 48128 19616 239;524;2168;2498 19381 30159 38966 38966 1 VLLAAAVCTK Unmodified 1044.6002 0.60015154 1154 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 0 9 0 1 59.606 59.606 2 9.4345E-09 15550 TMT1-8 169.12 110.14 123.09 121.48 128.97 109.2 119.75 143.69 116 124 131 109 124 138 2 2 2 2 2 2 10141 19617 1154 19382 30160 38967;38968 38967 2 VLLATLSIPITPER Unmodified 1521.913 0.91302948 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 78.305 78.305 2 2.0951E-12 22911 TMT1-8 133.91 92.723 46.891 31.495 27.214 45.747 38.458 37.279 44 33 29 44 40 36 1 1 1 1 1 1 7079.6 19618 1754 19383 30161 38969 38969 1 VLLDEPPEEEDGLR Unmodified 1609.7835 0.78353145 2129 Q86YL5;Q86YL5-2 TDRP Testis development-related protein yes no 0 0 0 0 0 2 0 1 59.257 59.257 3 0.0031178 18567 TMT1-1 47.532 32.852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19619 2129 19384 30162 38970 38970 1 VLLDLSAFLK Unmodified 1117.6747 0.67469669 1933 Q3ZCQ8-2;Q3ZCQ8;Q3ZCQ8-3 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 0 0 0 0 0 9 0 1 90.944 90.944 2 0.0016947 27873 TMT1-8 103.55 69.294 38.968 89.143 47.681 43.901 71.739 75.771 37 87 51 44 73 73 2 2 2 2 2 2 6734.7 19620 1933 19385 30163 38971;38972 38972 2 VLLDQLR Unmodified 855.5178 0.51780212 2697 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 0 7 0 1 56.141 56.141 2 0.036527 15904 TMT1-6 87.754 16.459 138.42 246.7 150.81 152.79 231.6 178.88 131 243 160 152 234 174 1 1 1 1 1 1 51036 19621 2697 19386 30164 38973 38973 1 VLLDWINDVLVEER Unmodified 1711.9145 0.91448604 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 6.8 0.748 2 2 1 101.93 101.93 2;3 3.5667E-79 32981 TMT1-6 244.01 227.72 237.45 274.13 290.82 179.17 280.27 295.81 224 277 291 183 285 285 9 11 9 9 11 12 140990 19622 2682 19387 30165;30166;30167;30168;30169 38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985 38983 12 VLLEAAIR Unmodified 883.5491 0.54910224 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 7 0 1 57.358 57.358 2 0.025235 16396 TMT1-6 85.212 0 169.61 201.6 176.51 143.3 248.26 163.48 160 203 181 145 249 160 1 1 1 1 1 1 11236 19623 832 19388 30170 38986 38986 1 VLLEAGEGLVTITPTTGSDGRPDAR Unmodified 2524.3133 0.31329523 2782 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 1 5 0 1 67.279 67.279 3 0.027227 20745 TMT1-4 37.228 23.773 23.419 21.61 13.12 38.063 26.745 53.603 22 22 15 36 29 51 1 1 1 1 1 1 7999.6 19624 2782 19389 30171 38987 38987 1 VLLEEGEAQR Unmodified 1142.5932 0.5931519 656 P11441 UBL4A Ubiquitin-like protein 4A yes yes 0 0 0 0 0 2 0 1 46.175 46.175 2 0.021136 13425 TMT1-1 75.294 46.376 23.148 59.71 26.366 29.472 34.725 45.913 22 58 29 29 36 44 1 1 1 1 1 1 6169.8 19625 656 19390 30172 38988 38988 1 VLLESEQFLTELTR Unmodified 1676.8985 0.89850163 1049 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 0 6 0 2 87.156 87.156 2;3 1.9205E-05 28744 TMT1-5 94.059 81.432 84.523 139.41 103.16 134.38 141.1 128.16 80 138 109 131 145 124 2 2 2 2 2 2 37946 19626 1049 19391 30173;30174 38989;38990 38990 2 VLLESIGSHEELTQDSR Unmodified 1911.9538 0.95378467 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 4 0 1 55.297 55.297 3 1.5747E-07 16351 TMT1-3 97.423 78.59 232.65 385.57 247.12 197.92 258.33 406.24 220 381 259 199 269 388 1 1 1 1 1 1 29950 19627 1658 19392 30175 38991 38991 1 VLLFTDDVALVSK Unmodified 1418.8021 0.80208205 2064 Q709C8-3;Q709C8;Q709C8-4;Q709C8-2 VPS13C Vacuolar protein sorting-associated protein 13C yes no 0 0 0 0 0 7 0 1 79.4 79.4 3 0.0051057 25063 TMT1-6 62.891 38.099 61.696 56.845 42.312 35.332 79.462 75.551 58 58 44 36 80 73 1 1 1 1 1 1 4449.8 19628 2064 19393 30176 38992 38992 1 VLLGEGVLTK Unmodified 1027.6277 0.6277465 2452 Q96S99 PLEKHF1 Pleckstrin homology domain-containing family F member 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 63.442 63.442 2 0.0033804 18826 TMT1-6 96.342 0 215.41 276.28 171.04 184.49 225.63 249.4 203 276 182 182 232 240 2 2 2 2 2 2 21404 19629 2452 19394 30177;30178 38993;38994 38993 2 VLLGELK Unmodified 770.49019 0.49019038 1596 Q05655;Q05655-2 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 0 0 0 0 0 8 0 1 60.764 60.764 2 0.027324 17807 TMT1-7 91.906 43.146 146.1 181.89 177.42 151.91 194.21 172.48 138 183 181 152 198 167 1 1 1 1 1 1 34528 19630 1596 19395 30179 38995 38995 1 VLLGETGK Unmodified 815.47527 0.4752686 1428 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 0 7 0 1 50.089 50.089 2 0.00492 13523 TMT1-6 121.62 63.373 231.02 324.55 211.88 318.39 299.11 276.09 218 323 228 308 309 267 1 1 1 1 1 1 30736 19631 1428 19396 30180 38996 38996 1 VLLGGPGSFYWQGQLISDQVAEIVSK Unmodified 2790.4592 0.45923119 522 P06756-3;P06756 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain yes no 0 0 0 0 0 9 0 1 96.294 96.294 4 3.2948E-05 29694 TMT1-8 49.871 29.057 30.837 20.838 29.338 14.241 21.574 22.836 29 22 29 15 22 22 1 1 1 1 1 1 3450.4 19632 522 19397 30181 38997 38997 1 VLLGQDEPLIHVFAK Unmodified 1677.9454 0.94539224 2531 Q9BT73 PSMG3 Proteasome assembly chaperone 3 yes yes 0 0 0 0 0 8 0 1 71.705 71.705 3 0.00083535 22157 TMT1-7 54.402 33.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19633 2531 19398 30182 38998 38998 1 VLLGVGDPK Unmodified 896.53312 0.53311783 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 7 0 1 56.661 56.661 2 0.013241 16146 TMT1-6 84.476 35.129 130.37 150.54 143.45 84.283 120.11 136.22 123 152 145 87 123 131 1 1 1 1 1 1 11503 19634 81 19399 30183 38999 38999 1 VLLHFVQK Unmodified 982.59639 0.59638679 2242 Q8TBF2;Q8TBF2-3 FAM213B Prostamide/prostaglandin F synthase yes no 0 0 0 0 0 9 0 1 54.812 54.812 3 0.0012269 13659 TMT1-8 94.407 69.021 122.74 135.62 175.84 82.355 119.94 143.69 116 138 174 87 123 138 1 1 1 1 1 1 12179 19635 2242 19400 30184 39000 39000 1 VLLLGSQQAGTTLNLDLGGK Unmodified 1997.1157 0.11570504 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 9 0 13 77.929 77.929 2;3;4 1.1375E-45 22264 TMT1-8 160.45 139.71 3226.5 4326.3 3911 3169.9 4101.2 4568 3049 4332 4000 3184 4210 4395 10 10 10 10 10 10 615640 19636 565 19401 30185;30186;30187;30188;30189;30190;30191;30192;30193;30194;30195;30196;30197 39001;39002;39003;39004;39005;39006;39007;39008;39009;39010;39011;39012;39013;39014;39015;39016;39017;39018;39019 39001 19 VLLLSSPGLEELYR Unmodified 1587.8872 0.88720866 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 8 0 2 77.191 77.191 2;3 2.1501E-10 24265 TMT1-7 128.08 77.203 53.965 64.301 72.968 42.372 72.872 44.825 51 65 73 44 73 44 2 2 2 2 2 2 25956 19637 2162 19402 30198;30199 39020;39021 39020 2 VLLMELEEAR Unmodified 1201.6377 0.63765925 668 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 0 5 0 1 70.159 70.159 2 0.001555 21905 TMT1-4 72.607 56.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19638 668 19403 30200 39022 39022 1 VLLNDGGYYDPETGVFTAPLAGR Unmodified 2424.1961 0.19614021 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 5.5 0.5 1 1 76.937 76.937 3 1.3108E-21 24617 TMT1-4 97.974 87.112 30.762 28.183 35.819 28.898 35.301 29.907 29 29 36 29 36 29 1 1 1 1 1 1 27454 19639 3051 19404 30201;30202 39023;39024 39023 2 VLLPAQDQEDPEEFYVLSETTLAQPQSLER Unmodified 3444.6937 0.69366039 2590 Q9BZV1-2;Q9BZV1 UBXN6 UBX domain-containing protein 6 yes no 0 0 0 0 0 4 0 1 84.96 84.96 4 0.004539 27904 TMT1-3 38.768 32.738 0 15.873 5.1859 32.229 13.417 23.069 0 15 7 30 15 22 0 1 1 1 1 1 3812.4 19640 2590 19405 30203 39025 39025 1 VLLPEYGGTK Unmodified 1075.5914 0.59136099 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 6.5 0.5 1 1 56.903 56.903 2 1.8565E-06 16208 TMT1-6 160.82 116.43 802.84 1064.6 861.74 845.14 859.16 1111.8 758 1065 894 835 895 1066 3 3 3 3 3 3 167350 19641 1395 19406 30204;30205 39026;39027;39028 39027 3 VLLPLIFR Unmodified 969.63752 0.63752332 440 P02730-2;P02730 SLC4A1 Band 3 anion transport protein yes no 0 0 0 0 0 9 0 1 80.105 80.105 2 0.0070747 23592 TMT1-8 96.666 84.235 38.275 27.677 35.805 29.042 27.709 37.585 36 29 36 29 29 36 1 1 1 1 1 1 6052.2 19642 440 19407 30206 39029 39029 1 VLLPVLLNK Unmodified 1007.6743 0.67430276 48 O00186 STXBP3 Syntaxin-binding protein 3 yes yes 0 0 0 0 0 9 0 1 75.089 75.089 2 0.0014184 21664 TMT1-8 124.37 89.566 108.26 90.661 122.96 93.009 127.83 143.46 102 94 123 94 131 138 1 1 1 1 1 1 12976 19643 48 19408 30207 39030 39030 1 VLLPVWEAEGLGLR Unmodified 1550.8821 0.8820637 1976 Q5T447 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes yes 0 0 0 0 0 8 0 1 81.495 81.495 2 7.2904E-14 25967 TMT1-7 131.43 70.46 101.3 70.047 47.508 66.46 93.239 59.167 95 73 51 65 94 58 2 2 2 2 2 2 8741.1 19644 1976 19409 30208 39031;39032 39032 2 VLLQAFDVVER Unmodified 1287.7187 0.71868677 1871 Q15750-2;Q15750 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes no 0 0 0 0 0 7 0 1 74.562 74.562 2 0.0023877 23191 TMT1-6 93.096 59.833 54.205 73.605 24.653 45.693 49.428 52.956 51 73 29 44 51 51 1 1 1 1 1 1 10055 19645 1871 19410 30209 39033 39033 1 VLLQSALSLGR Unmodified 1155.6976 0.69755739 2456 Q96T51;Q96T51-2;Q96T51-3 RUFY1 RUN and FYVE domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 67.563 67.563 2 0.044528 18713 TMT1-8 56.043 22.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19646 2456 19411 30210 39034 39034 1 VLLSALER Unmodified 899.54402 0.54401687 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8 0 1 60.369 60.369 2 0.014746 17700 TMT1-7 93.561 56.991 130.1 190.82 153.79 162.24 184.55 196.21 123 190 160 160 190 189 1 1 1 1 1 1 23405 19647 657 19412 30211 39035 39035 1 VLLSICSLLCDPNPDDPLVPEIAR Unmodified 2705.3768 0.37682347 1374 P62837-2;P62837;P61077;P61077-2;P61077-3 UBE2D2;UBE2D3 Ubiquitin-conjugating enzyme E2 D2;Ubiquitin-conjugating enzyme E2 D3 yes no 0 0 0 0 0 8 0 1 95.806 95.806 3 0.0012866 31248 TMT1-7 48.182 36.932 0 7.3287 7.1343 0 0 0 0 7 7 0 0 0 0 1 1 0 0 0 1999.6 19648 1374 19413 30212 39036 39036 1 VLLTMIAR Unmodified 915.55756 0.55755844 272 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 0 9 0 1 66.013 66.013 2 0.0073579 18130 TMT1-8 108.7 74.844 130.3 197.83 115.32 117.54 126.44 150.96 123 196 123 116 131 145 1 1 1 1 1 1 33025 19649 272 19414 30213 39037 39037 1 VLLVGLK Unmodified 740.51601 0.5160112 2837 Q9UBE0;Q9UBE0-2;Q9UBE0-3 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 0 9 0 1 64.567 64.567 2 0.015363 17484 TMT1-8 97.64 60.982 122.44 221.14 153.07 138.39 176.52 187.91 116 218 160 138 181 181 1 1 1 1 1 1 17642 19650 2837 19415 30214 39038 39038 1 VLLVLELQGLQK Unmodified 1351.8439 0.84388728 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 2 82.866 82.866 2;3 1.2818E-06 24669 TMT1-8 109.24 42.937 130.84 212.47 192.37 165.5 237.56 171.24 124 211 197 166 240 167 3 3 3 3 3 3 34141 19651 1792 19416 30215;30216 39039;39040;39041 39039 3 VLLVPGPEKEN Unmodified 1193.6656 0.66558856 2471 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 1 6 0 1 57.736 57.736 2 0.033011 17172 TMT1-5 90.709 62.696 77.301 85.681 100.19 104.23 68.452 90.789 73 87 102 102 73 87 1 1 1 1 1 1 12681 19652 2471 19417 30217 39042 39042 1 VLMASVQGSK Unmodified 1018.5481 0.54811597 2951 Q9Y251-2;Q9Y251;Q9Y251-3 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 9 0 1 50.147 50.147 2 0.00041047 11845 TMT1-8 115.78 67.875 69.037 55.859 71.644 81.77 74.432 159.91 65 58 73 80 80 152 1 1 1 1 1 1 6881.6 19653 2951 19418 30218 39043 39043 1 VLMEWINATLLPEHIVVR Unmodified 2132.1816 0.18161654 2681 Q9HBI0;Q9HBI0-3;Q9HBI0-2 PARVG Gamma-parvin yes no 0 0 0 0 0 9 0 1 87.983 87.983 3 7.5282E-05 26718 TMT1-8 63.337 44.279 38.958 81.561 55.752 42.971 95.623 51.637 37 80 58 44 95 51 2 2 2 2 2 2 5636.1 19654 2681 19419 30219 39044;39045 39045 2 VLMVETHNEIYDKFK Unmodified 1864.9393 0.93932058 415 P01137 TGFB1 Transforming growth factor beta-1;Latency-associated peptide yes yes 0 0 0 0 1 8 0 1 59.217 59.217 4 0.027154 17291 TMT1-7 46.318 28.401 99.616 131.02 98.45 79.713 98.88 120.83 94 131 102 80 102 116 1 1 1 1 1 1 9035.5 19655 415 19420 30220 39046 39046 1 VLNEAVGALMYHTITLTR Unmodified 2001.0717 0.07173174 1696 Q13363-2;Q13363 CTBP1 C-terminal-binding protein 1 yes no 0 0 0 0 0 9 0 1 77.625 77.625 3 2.1454E-05 22642 TMT1-8 69.763 52.685 23.122 44.529 43.553 28.432 35.579 22.437 22 44 44 29 36 22 1 1 1 1 1 1 4856 19656 1696 19421 30221 39047 39047 1 VLNEECDQNWYK Unmodified 1596.6879 0.68785692 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 4.5 0.5 1 1 56.675 56.675 3 1.7027E-05 16975 TMT1-3 105.17 94.383 199.64 295.73 280.72 224.05 273.33 361.04 189 295 286 225 283 346 2 2 2 2 2 2 38354 19657 1464 19422 30222;30223 39048;39049 39048 2 VLNLGQALER Unmodified 1111.635 0.63495714 2235 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 0 7 0 1 59.194 59.194 2 0.0010747 17157 TMT1-6 77.533 41.915 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19658 2235 19423 30224 39050 39050 1 VLNLIQSWADAFR Unmodified 1531.8147 0.81471242 238 O60784;O60784-2;O60784-4 TOM1 Target of Myb protein 1 yes no 0 0 0 0 0 9 0 1 96.16 96.16 2 6.7638E-06 29720 TMT1-8 107.06 72.669 38.248 42.71 27.68 21.155 65.992 29.889 36 43 29 22 65 29 2 2 2 2 2 1 4669 19659 238 19424 30225 39051;39052 39052 2 VLNLVLPNLSLGPIDSSVLSR Unmodified 2205.2733 0.27326832 2482 Q99685 MGLL Monoglyceride lipase yes yes 0 0 0 0 0 9 0 2 93.577 93.577 3;4 2.0393E-13 28719 TMT1-8 92.95 76.644 77.266 101.77 92.386 87.727 98.748 83.528 73 102 95 87 101 81 3 3 3 3 3 3 37086 19660 2482 19425 30226;30227 39053;39054;39055 39053 3 VLNNMEIGTSLFDEEGAK Unmodified 1965.9354 0.93535742 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 5 0.816 1 1 1 74.052 74.052 3 4.5233E-25 23501 TMT1-4 149.19 126.87 346.14 502.48 369.72 335.7 447.89 489.31 327 500 385 335 459 471 4 4 4 4 4 4 135890 19661 397 19426 30228;30229;30230 39056;39057;39058;39059 39058 4 VLNNMEIGTSLFDEEGAK Oxidation (M) 1981.9303 0.93027204 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 0 5 0 1 66.996 66.996 3 6.7851E-11 20664 TMT1-4 91.622 66.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19662 397 19426 30231 39060 39060 45 1 VLNNVVIHLLGDEDPR Unmodified 1801.9686 0.96864688 1105 P42858 HTT Huntingtin yes yes 0 0 0 0 0 6 0 1 72.213 72.213 3 0.025491 22905 TMT1-5 42.818 23.743 46.018 118.65 100.18 63.624 77.099 106.53 44 116 102 65 80 102 1 1 1 1 1 1 7071.4 19663 1105 19427 30232 39061 39061 1 VLNQQLTNHIR Unmodified 1334.7419 0.74188183 1591;2942 Q05193-3;Q05193;Q05193-5;Q05193-2;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM1;DNM3 Dynamin-1;Dynamin-3 no no 0 0 0 0 0 8 0 1 40.531 40.531 3 3.393E-06 9835 TMT1-7 121.29 89.417 185.77 578.96 387.98 423.93 463.84 485.65 178 562 409 417 478 468 1 1 1 1 1 1 19290 19664 1591;2942 19428 30233 39062 39062 1 VLNSIISSLDLLPYGLR Unmodified 1872.072 0.072049316 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 9 0 1 99.296 99.296 3 1.0153E-19 30817 TMT1-8 129.65 96.649 46.774 35.485 43.593 37.048 42.24 60.623 44 37 44 37 44 58 2 2 2 2 2 2 16746 19665 1723 19429 30234 39063;39064 39064 2 VLNSYWVGEDSTYK Unmodified 1659.7781 0.77805214 1389 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 0 0 6 0 1 64.39 64.39 3 9.0717E-05 19791 TMT1-5 86.548 64.675 91.824 162.05 119.39 78.888 76.397 106.55 87 160 123 80 80 102 1 1 1 1 1 1 33559 19666 1389 19430 30235 39065 39065 1 VLNTSSLESATDEAGSPLAAAAAAAAAER Unmodified 2714.3359 0.33588117 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 5 0 1 75.084 75.084 3 1.4448E-13 23842 TMT1-4 80.418 65.805 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19667 2061 19431 30236 39066 39066 1 VLPALLPS Unmodified 808.50584 0.50584045 751 P16930;P16930-2 FAH Fumarylacetoacetase yes no 0 0 0 0 0 8 0 1 78.832 78.832 2 0.030152 24948 TMT1-7 81.672 68.543 38.21 51.239 26.807 29.283 43.403 37.137 36 51 29 29 44 36 1 1 1 1 1 1 32744 19668 751 19432 30237 39067 39067 1 VLPAQATEYAFAFIQVPQDDDAR Unmodified 2564.2547 0.25471772 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 6.67 0.471 1 2 86.3 86.3 3;4 5.0609E-30 27744 TMT1-6 115.85 102.66 85.796 102.11 101.21 82.537 62.34 84.567 81 103 103 80 66 81 3 3 3 2 3 3 19479 19669 2071 19433 30238;30239;30240 39068;39069;39070;39071 39071 4 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR Unmodified 3506.7318 0.73177723 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 1 6 0 1 83.137 83.137 4 7.7932E-20 27163 TMT1-5 98.839 90.001 23.458 29.274 0 15.991 21.493 22.839 22 29 0 15 22 22 1 1 0 1 1 1 13348 19670 2071 19434 30241 39072 39072 1 VLPAVGISYVVYENMK Unmodified 1780.9433 0.94334333 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 0 8 0 1 81.801 81.801 3 0.00022454 26067 TMT1-7 56.527 37.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19671 2019 19435 30242 39073 39073 1 VLPEFDTPGHTLSWGK Unmodified 1782.8941 0.89408495 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 7 0 1 65.349 65.349 3 1.3026E-06 19584 TMT1-6 79.771 55.213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19672 539 19436 30243 39074 39074 1 VLPGVDALSNI Unmodified 1096.6128 0.61282471 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 4.5 2.06 1 1 2 81.248 81.248 2 1.3646E-16 26552 TMT1-5 183.74 139.97 514.36 805.59 513.44 612.55 788.77 822.83 486 795 546 602 808 793 7 6 6 7 7 7 716080 19673 397 19437 30244;30245;30246;30247 39075;39076;39077;39078;39079;39080;39081 39079 7 VLPHLIPLSIENNLNLNQFNSFISVIK Unmodified 3075.7121 0.71209183 2029 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 0 0 9 0 1 92.845 92.845 4 2.9403E-05 28461 TMT1-8 48.097 35.419 7.3285 30.278 5.0217 15.686 21.764 15.369 7 29 7 15 22 15 1 1 1 1 1 1 2177.6 19674 2029 19438 30248 39082 39082 1 VLPLEALVTDAGEVTEAGK Unmodified 1911.0201 0.020073325 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 5 0 1 86.1 86.1 3 1.3723E-06 28158 TMT1-4 80.975 68.829 23.262 36.283 27.049 45.683 42.356 45.695 22 36 29 44 44 44 1 1 1 1 1 1 4399.3 19675 2308 19439 30249 39083 39083 1 VLPPNWK Unmodified 852.48577 0.48577371 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 9 0 1 55.572 55.572 2 0.010603 14144 TMT1-8 119.7 52.707 145.8 265.25 156.84 161.65 206.31 203.05 138 261 167 160 211 196 2 2 2 2 2 2 12581 19676 1427 19440 30250 39084;39085 39085 2 VLPPPAGYVPIR Unmodified 1277.7496 0.74959297 286 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 0 8 0 1 60.62 60.62 2 0.0040767 17794 TMT1-7 60.019 15.572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19677 286 19441 30251 39086 39086 1 VLPQLISTITASVQNPALR Unmodified 2020.1681 0.16807497 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 9 0 1 90.551 90.551 3 2.5222E-05 27638 TMT1-8 61.87 39.337 7.2195 22.42 29.996 0 14.899 23.027 7 22 29 0 15 22 1 1 1 0 1 1 3869.3 19678 2308 19442 30252 39087 39087 1 VLPSFWIPSLTPEAK Unmodified 1683.9236 0.92359417 2981 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 0 0 0 9 0 1 85.373 85.373 3 2.0757E-05 25669 TMT1-8 73.887 45.081 61.358 102.31 60.566 74.438 92.6 97.562 58 101 65 73 95 94 2 2 2 2 2 2 4831.7 19679 2981 19443 30253 39088;39089 39089 2 VLPSITTEILK Unmodified 1212.7329 0.73293985 1012 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 0 8 0 2 72.21 72.21 2;3 2.0921E-05 22381 TMT1-7 112.89 87.457 394.56 632.49 416.78 410.44 450.83 577.7 373 626 439 406 468 554 3 3 3 3 3 3 104370 19680 1012 19444 30254;30255 39090;39091;39092 39091 3 VLPSIVNEVLK Unmodified 1209.7333 0.7332742 2479 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 0 7.67 0.471 1 2 77.041 77.041 2;3 4.3235E-17 24239 TMT1-7 189.72 122.69 264.76 370.19 273.47 279.18 328.98 311.48 250 369 286 276 337 301 4 4 4 4 4 4 64131 19681 2479 19445 30256;30257;30258 39093;39094;39095;39096 39095 4 VLPTHDASK Unmodified 966.51345 0.51344502 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 34.947 34.947 3 2.8646E-07 8161 TMT1-5 165.98 157.11 3530.6 4652.5 3921.6 2433 3669.6 4902.3 3334 4658 3999 2503 3776 4697 7 7 7 7 7 7 814670 19682 831 19446 30259;30260;30261;30262 39097;39098;39099;39100;39101;39102;39103 39100 7 VLPTHDASKVK Unmodified 1193.6768 0.67682195 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8 0.707 1 2 1 37.257 37.257 3;4 0.0017092 8567 TMT1-6 82.171 39.428 625.11 537.88 881.97 513.33 712.16 780.24 590 559 869 530 729 751 4 4 4 4 4 4 240140 19683 831 19447 30263;30264;30265;30266 39104;39105;39106;39107 39104 4 VLPTYDASK Unmodified 992.51786 0.51786169 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 6 0 1 50.084 50.084 2 0.00033959 14182 TMT1-5 94.309 46.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19684 270 19448 30267 39108 39108 1 VLPYYSSYYWIGIR Unmodified 1778.9032 0.90319307 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 9 0 1 78.973 78.973 3 5.0125E-24 23180 TMT1-8 174.05 136.08 54.138 57.227 49.897 35.436 49.9 52.942 51 58 51 36 51 51 1 1 1 1 1 1 45896 19685 733 19449 30268 39109 39109 1 VLQALEGLK Unmodified 969.58588 0.58588168 1060 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 0 8 0 1 70.081 70.081 2 0.00035982 21481 TMT1-7 139.96 107.74 191.43 324.35 192.43 273.9 285.41 277.54 181 320 208 266 294 268 1 1 1 1 1 1 52007 19686 1060 19450 30269 39110 39110 1 VLQAQGSSDPEEESVLYSNR Unmodified 2207.0342 0.03421984 1874 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 0 3 0 1 54.722 54.722 3 0.0020246 17124 TMT1-2 42.029 33.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19687 1874 19451 30270 39111 39111 1 VLQASVLDDWFPLQGGQGQVHLR Unmodified 2562.3343 0.33430545 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 8 0 2 77.397 77.397 3;4 4.0474E-10 24411 TMT1-7 90.464 81.417 53.792 111.31 62.224 50.247 95.032 59.116 51 109 66 51 95 58 2 2 2 2 2 2 40320 19688 2525 19452 30271;30272 39112;39113 39113 2 VLQATVVAVGSGSK Unmodified 1314.7507 0.75071518 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 9 0 2 57.99 57.99 2;3 2.1321E-23 14903 TMT1-8 178.22 127.16 436.2 804.08 486.58 429.39 500.74 622.11 413 791 514 428 518 597 3 3 3 3 3 3 215520 19689 1395 19453 30273;30274 39114;39115;39116 39114 3 VLQDLVMDILR Unmodified 1313.7377 0.73770765 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 7.5 0.5 1 1 97.881 97.881 2;3 0.0050828 31780 TMT1-6 67.93 39.712 30.681 60.107 35.895 29.983 42.565 60.613 29 59 37 30 44 58 2 3 2 2 3 3 3892.7 19690 1286 19454 30275;30276 39117;39118;39119 39117 3 VLQDMGLPTGAEGR Unmodified 1442.7188 0.71876312 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 5 0 1 60.34 60.34 3 0.00028117 18047 TMT1-4 61.641 40.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19691 1655 19455 30277 39120 39120 1 VLQELDMSDFEEQFK Unmodified 1856.8502 0.8502308 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 5 0 1 80.67 80.67 3 0.0009876 26044 TMT1-4 68.481 49.405 30.392 97.31 39.304 51.9 79.763 44.628 29 94 44 51 80 44 1 1 1 1 1 1 9131.3 19692 356 19456 30278 39121 39121 1 VLQHAASNK Unmodified 966.52468 0.52467841 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 8 0.816 1 1 1 30.537 30.537 3 0.0026348 5932 TMT1-6 83.998 49.746 196.14 253.99 182.11 211.06 230.76 186.36 185 254 192 207 236 181 3 3 3 3 3 3 24445 19693 1723 19457 30279;30280;30281 39122;39123;39124 39122 3 VLQIFNK Unmodified 860.51199 0.51198846 1170 P49137;P49137-2 MAPKAPK2 MAP kinase-activated protein kinase 2 yes no 0 0 0 0 0 9 0 1 64.269 64.269 2 0.0051689 17411 TMT1-8 111.28 54.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19694 1170 19458 30282 39125 39125 1 VLQLEDDSLDSK Unmodified 1360.6722 0.67219008 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 3 1 1 1 61.584 61.584 3 0.0030742 19573 TMT1-1 69.229 45.038 130.99 98.314 82.599 111.69 134.3 143.28 123 102 87 109 138 138 2 2 2 2 2 2 14467 19695 1960 19459 30283;30284 39126;39127 39126 2 VLQLINDNTATALSYGVFR Unmodified 2094.111 0.11095402 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 9 0 1 84.293 84.293 3 2.1817E-13 25206 TMT1-8 109.72 82.688 46.783 34.431 42.973 52.385 42.341 37.168 44 36 44 51 44 36 1 1 1 1 1 1 27766 19696 3017 19460 30285 39128 39128 1 VLQLSDTAIVPIGYHVPR Unmodified 1977.1047 0.10474643 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 8 0 1 66.582 66.582 3 2.9541E-14 20107 TMT1-7 121.82 101.29 100.5 121.78 138.44 68.857 84.428 129.77 95 123 138 72 88 124 2 2 2 2 2 2 19726 19697 1342 19461 30286 39129;39130 39129 2 VLQLTSWDEDAWASK Unmodified 1747.8417 0.84171503 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 5.83 2.27 1 2 2 1 76.489 76.489 3;4 1.8243E-28 23867 TMT1-6 190.44 179.97 3328.6 4143.8 3849.5 2695.6 3359.5 3953.9 3143 4166 3914 2734 3460 3799 11 11 11 11 11 11 633600 19698 776 19462 30287;30288;30289;30290;30291;30292 39131;39132;39133;39134;39135;39136;39137;39138;39139;39140;39141 39137 11 VLQLYPNNK Unmodified 1087.6026 0.60259438 1570 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 0 8 0 1 55.489 55.489 3 0.0020455 15775 TMT1-7 59.35 33.411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19699 1570 19463 30293 39142 39142 1 VLQQFADNDVSR Unmodified 1390.6841 0.68409218 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 5 0 1 53.347 53.347 2 2.972E-18 15320 TMT1-4 181.66 152.6 77.689 79.205 40.476 44.631 55.744 83.689 73 80 44 44 58 80 1 1 1 1 1 1 13777 19700 1250 19464 30294 39143 39143 1 VLQQQQK Unmodified 870.49232 0.49231565 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 35.588 35.588 2 0.0019996 7838 TMT1-6 144.29 84.654 61.492 41.167 89.888 32.907 57.602 45.26 58 44 87 36 58 44 1 1 1 1 1 1 6547.6 19701 3042 19465 30295 39144 39144 1 VLSAPPHFHFGQTNR Unmodified 1706.8641 0.86412223 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 9 0 1 45.258 45.258 4 1.1914E-05 10039 TMT1-8 79.804 63.271 354.74 392.75 279.39 275.67 264.59 302.66 334 396 293 272 275 291 2 2 2 2 2 2 19812 19702 904 19466 30296 39145;39146 39146 2 VLSEIFSPMLFR Unmodified 1437.769 0.76900778 921 P27986;P27986-4 PIK3R1 Phosphatidylinositol 3-kinase regulatory subunit alpha yes no 0 0 0 0 0 9 0 1 88.261 88.261 2 0.0063782 26773 TMT1-8 71.524 49.376 23.119 67.186 24.848 53.482 41.485 60.644 22 65 29 51 44 58 1 1 1 1 1 1 4022.8 19703 921 19467 30297 39147 39147 1 VLSGLEILSK Unmodified 1057.6383 0.63831118 143 O15357 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes yes 0 0 0 0 0 8 0 1 72.006 72.006 3 0.00065547 22299 TMT1-7 96.342 43.552 46.704 50.4 42.732 36.292 27.083 46.131 44 51 44 36 29 44 1 1 1 1 1 1 2893.9 19704 143 19468 30298 39148 39148 1 VLSGTIHAGQPVK Unmodified 1305.7405 0.74048484 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 8 0 1 43.072 43.072 3 0.00027205 10853 TMT1-7 85.554 50.667 115.17 194.24 136.4 185.28 235.09 186.24 109 192 145 181 239 181 1 1 1 1 1 1 12543 19705 1816 19469 30299 39149 39149 1 VLSIAQAHSPAFSCEQVR Unmodified 1998.9945 0.99454405 568 P08571 CD14 Monocyte differentiation antigen CD14;Monocyte differentiation antigen CD14, urinary form;Monocyte differentiation antigen CD14, membrane-bound form yes yes 0 0 0 0 0 8 0 1 52.139 52.139 3 3.9034E-10 14441 TMT1-7 105.77 95.643 77.63 62.852 64.224 43.628 33.818 53.401 73 65 65 44 36 51 1 1 1 1 1 1 18505 19706 568 19470 30300 39150 39150 1 VLSIGDGIAR Unmodified 999.57129 0.57129425 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 54.774 54.774 2 2.2276E-62 15443 TMT1-6 220.71 135.8 1206.5 2029 1626.6 1275.6 1584.2 1720.1 1143 2009 1674 1283 1627 1656 2 2 2 2 2 2 305920 19707 888 19471 30301;30302 39151;39152;39153 39153 3 VLSILLK Unmodified 784.54223 0.54222595 798 P19838-2;P19838;P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 0 0 9 0 1 73.25 73.25 2 0.01537 20936 TMT1-8 97.602 15.967 77.683 71.634 47.836 59.635 48.274 67.912 73 73 51 58 51 65 1 1 1 1 1 1 6395.7 19708 798 19472 30303 39154 39154 1 VLSIQSHVIR Unmodified 1150.6822 0.68224168 88 O00764;O00764-2 PDXK Pyridoxal kinase yes no 0 0 0 0 0 9 0 1 44.044 44.044 3 0.000542 9464 TMT1-8 95.483 62.293 108.14 137.83 102.08 158.13 102.35 128.2 102 138 109 152 109 123 1 1 1 1 1 1 8283.6 19709 88 19473 30304 39155 39155 1 VLSLLALVKPEVWTLK Unmodified 1808.1175 0.11754295 2907 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 1 9 0 2 92.426 92.426 3;4 5.2947E-20 28328 TMT1-8 142.91 127.03 220.91 418.05 388 320.39 332.11 378.55 210 413 396 320 344 364 4 4 4 4 4 4 38061 19710 2907 19474 30305;30306 39156;39157;39158;39159 39157 4 VLSPADK Unmodified 728.40685 0.40685468 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 0 4.75 2.28 1 1 1 1 42.471 42.471 2 0.0083263 11058 TMT1-5 117.17 50.175 30625 30530 23849 19800 5609 12981 28817 31009 24692 19512 6658 12327 5 5 5 5 5 5 2308700 19711 1499 19475 30307;30308;30309;30310 39160;39161;39162;39163;39164 39163 5 VLSPADK Acetyl (Protein N-term) 770.41742 0.41741937 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 1 0 0 0 3.5 0.5 1 1 51.995 51.995 2 0.0069231 16141 TMT1-2 56.011 27.498 161.57 173.47 109.71 102.82 113.25 98.038 152 175 116 102 116 95 2 2 2 2 2 2 17458 19712 1499 19475 30311;30312 39165;39166 39165 2 VLSPADKTNVK Unmodified 1170.6608 0.66083754 1499 P69905 HBA1 Hemoglobin subunit alpha yes yes 0 0 0 0 1 7.5 0.5 1 1 43.213 43.213 3 6.56E-05 10801 TMT1-7 108.9 72.479 5497.1 5075 2539.6 2620 663.46 3400.8 5161 5158 2762 2547 861 3208 3 3 3 3 3 3 355570 19713 1499 19476 30313;30314 39167;39168;39169 39168 3 VLSPEAVR Unmodified 869.49707 0.49706667 334 O94925;O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 5 0 1 41.732 41.732 2 0.028702 10783 TMT1-4 82.716 50.589 84.749 108.74 91.18 80.289 91.284 97.599 80 109 94 80 94 94 1 1 1 1 1 1 15249 19714 334 19477 30315 39170 39170 1 VLSPVDSGNK Unmodified 1014.5346 0.53457439 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 6 0 1 45.625 45.625 2 7.1078E-05 12417 TMT1-5 108.15 57.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19715 651 19478 30316 39171 39171 1 VLSQQAASVVK Unmodified 1128.6503 0.65027285 964 P30566 ADSL Adenylosuccinate lyase yes yes 0 0 0 0 0 8 0 1 48.9 48.9 3 0.0016244 13155 TMT1-7 80.245 44.301 169.7 201.84 161.92 130.48 162.48 180.85 160 203 167 131 167 174 1 1 1 1 1 1 9490.7 19716 964 19479 30317 39172 39172 1 VLSSIEQK Unmodified 902.5073 0.50729701 985 P31947-2;P31947 SFN 14-3-3 protein sigma yes no 0 0 0 0 0 5.5 2.69 1 1 1 1 48.543 48.543 2;3 2.944E-12 13323 TMT1-5 183.26 0 3900.7 5008.6 4360.8 3297.9 4641.9 5310.5 3683 5023 4462 3335 4757 5106 5 5 5 5 5 5 747430 19717 985 19480 30318;30319;30320;30321 39173;39174;39175;39176;39177;39178 39174 6 VLSTLLAVNK Unmodified 1056.6543 0.6542956 1821 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 yes yes 0 0 0 0 0 9 0 1 70.006 70.006 3 6.1713E-05 19663 TMT1-8 115.71 88.6 68.771 102.61 76.764 73.915 69.04 114.22 65 102 80 73 73 109 1 1 1 1 1 1 7808.1 19718 1821 19481 30322 39179 39179 1 VLSTPDLEVR Unmodified 1127.6186 0.61863837 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 5 0 1 55.46 55.46 2 0.019428 16117 TMT1-4 76.17 44.866 160.95 230.02 166.44 162.06 154.17 167.23 152 229 174 160 160 161 1 1 1 1 1 1 29066 19719 1286 19482 30323 39180 39180 1 VLSVPESTPFTAVLK Unmodified 1586.892 0.89195969 1405 P61960 UFM1 Ubiquitin-fold modifier 1 yes yes 0 0 0 0 0 8.33 0.471 2 1 75.038 75.038 2;3 4.0368E-14 23461 TMT1-7 130.56 105.18 231.07 290.16 232.01 179.91 217.69 303.99 218 291 239 181 226 291 4 4 4 4 4 4 68995 19720 1405 19483 30324;30325;30326 39181;39182;39183;39184 39183 4 VLTAEELNAAQTSVAYGCIK Unmodified 2137.0725 0.072519601 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 68.474 68.474 3 0.008513 21437 TMT1-5 42.172 31.117 30.729 35.647 35.021 36.752 27.061 46.132 29 36 36 36 29 44 1 1 1 1 1 1 5268.8 19721 1296 19484 30327 39185 39185 1 VLTCTDLEQGPNFFLDFENAQPTESEK Unmodified 3128.4285 0.42846092 2751 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 0 5 0 1 84.631 84.631 4 0.00079769 27606 TMT1-4 43.494 31.971 31.957 20.896 21.386 22.511 13.864 23.056 30 22 22 22 15 22 1 1 1 1 1 1 5283.9 19722 2751 19485 30328 39186 39186 1 VLTDEQYQAVR Unmodified 1320.6674 0.66737948 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 4 0 1 46.092 46.092 2 5.6218E-06 12721 TMT1-3 127.93 64.77 98.969 160.52 182.07 81.688 135.68 143.24 94 160 181 87 138 138 1 1 1 1 1 1 20204 19723 2914 19486 30329 39187 39187 1 VLTDIVAK Unmodified 857.52222 0.52221879 2375 Q96BY6;Q96BY6-3 DOCK10 Dedicator of cytokinesis protein 10 yes no 0 0 0 0 0 7 0 1 59.529 59.529 2 0.0013098 17290 TMT1-6 107.9 51.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19724 2375 19487 30330 39188 39188 1 VLTEIIASR Unmodified 1000.5917 0.59169534 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 6.5 0.5 1 1 60.562 60.562 2 2.0888E-09 17650 TMT1-6 177.97 104.4 662.07 1561 1016.1 783.77 1134 1322.5 630 1525 1061 792 1162 1271 3 3 3 3 3 3 224350 19725 578 19488 30331;30332 39189;39190;39191 39190 3 VLTFALSEEVRPQDTVSVIGGVAGGSK Unmodified 2715.4443 0.44430941 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 1 8 0 2 74.704 74.704 3;4 1.1389E-17 23331 TMT1-7 93.392 73.843 123.18 120.67 113.47 93.826 114.47 74.552 116 123 116 94 116 73 1 1 1 1 1 1 20110 19726 1324 19489 30333;30334 39192;39193 39193 2 VLTFAYK Unmodified 840.47454 0.47454032 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 9 0 1 60.398 60.398 2 0.010162 15854 TMT1-8 121.29 56.04 200.46 235.43 192.47 245.92 203.9 221.24 189 237 202 239 213 213 1 1 1 1 1 1 30957 19727 934 19490 30335 39194 39194 1 VLTGDALLELNYGQEVWLR Unmodified 2188.1528 0.15281883 1684 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 0 7 0 1 86.538 86.538 3 0.00060337 28018 TMT1-6 56.9 49.648 23.335 28.932 20.953 22.394 21.455 15.378 22 29 22 22 22 15 1 1 1 1 1 1 7148.3 19728 1684 19491 30336 39195 39195 1 VLTGYLNYMVQLGK Unmodified 1597.8538 0.85380004 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 9 0 1 82.184 82.184 3 1.3318E-10 24391 TMT1-8 119.39 89.18 84.868 92.879 84.6 79.312 105.93 129.16 80 94 87 79 109 124 2 2 2 2 2 2 8905.1 19729 1106 19492 30337 39196;39197 39196 2 VLTIDPTEFK Unmodified 1161.6281 0.62814043 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 7 0 1 69.512 69.512 2 3.532E-27 21223 TMT1-6 174.41 112.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19730 1287 19493 30338 39198 39198 1 VLTIVEASVNPISK Unmodified 1468.8501 0.85009487 2448 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 ERBB2IP Protein LAP2 yes no 0 0 0 0 0 8 0 1 74.01 74.01 3 1.2236E-05 23109 TMT1-7 97.86 61.526 77.032 132.42 105.75 86.501 121.62 89.272 73 131 109 87 123 87 2 2 2 2 2 2 19278 19731 2448 19494 30339 39199;39200 39200 2 VLTLSDDLER Unmodified 1159.6085 0.60846762 1307 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 0 4 0 1 58.769 58.769 2 0.00014914 17700 TMT1-3 134.23 80.453 76.981 123.65 121.78 78.602 84.032 97.806 73 123 123 80 87 94 1 1 1 1 1 1 20763 19732 1307 19495 30340 39201 39201 1 VLTMAPGLITLEIVPFR Unmodified 1869.0798 0.079777231 163 O43252 PAPSS1 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 0 0 0 0 0 9 0 1 93.347 93.347 3 0.044971 28630 TMT1-8 31.883 6.6662 23.339 28.943 20.273 37.631 27.021 46.133 22 29 22 36 29 44 1 1 1 1 1 1 3078.4 19733 163 19496 30341 39202 39202 1 VLTPEEQLADK Unmodified 1241.6503 0.65033243 303 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 0 4 0 1 54.239 54.239 2 2.2115E-06 15919 TMT1-3 133.42 84.623 53.607 103.24 100.01 87.405 91.726 75.201 51 102 102 87 94 73 1 1 1 1 1 1 11818 19734 303 19497 30342 39203 39203 1 VLTPEEQLADKLR Unmodified 1510.8355 0.83550744 303 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 1 6 0 1 58.65 58.65 3 1.0721E-05 17554 TMT1-5 107.93 88.532 122.89 143.59 143.52 92.788 74.438 144.98 116 145 145 94 80 138 1 1 1 1 1 1 13551 19735 303 19498 30343 39204 39204 1 VLTPTQVK Unmodified 884.53312 0.53311783 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 8 0 1 46.279 46.279 2 1.3654E-07 12180 TMT1-7 167.9 70.834 646.22 1067.7 671.47 709.24 958.56 1049.3 611 1055 712 702 982 1010 2 2 2 2 2 2 153440 19736 954 19499 30344 39205;39206 39206 2 VLTSEDEYNLLSDR Unmodified 1652.7893 0.78934511 2589 Q9BZQ8 FAM129A Protein Niban yes yes 0 0 0 0 0 3 0 1 63.156 63.156 3 0.00014784 20406 TMT1-2 82.102 66.212 46.738 34.307 50.568 52.09 33.979 37.406 44 36 51 51 36 36 1 1 1 1 1 1 13241 19737 2589 19500 30345 39207 39207 1 VLTSGIFETK Unmodified 1093.6019 0.60192568 1469 P63092-3;P63092-2;P63092;P63092-4;Q5JWF2-2;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 0 8 0 1 63.134 63.134 2 0.0003568 18757 TMT1-7 121.5 78.419 84.503 131.8 112.99 94.033 105 136.65 80 131 116 94 109 131 1 1 1 1 1 1 14938 19738 1469 19501 30346 39208 39208 1 VLTTAGSYVR Unmodified 1065.5819 0.58185894 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 7 0 1 47.46 47.46 2 0.00055904 12514 TMT1-6 113.66 78.558 129.9 183.77 194.06 190.78 224.92 231.3 123 184 198 189 231 223 1 1 1 1 1 1 31760 19739 199 19502 30347 39209 39209 1 VLTTGYWPTQSATPK Unmodified 1648.8461 0.84607213 1730 Q13618;Q13618-2;Q13618-3 CUL3 Cullin-3 yes no 0 0 0 0 0 9 0 1 61.81 61.81 3 0.00035419 16431 TMT1-8 64.394 44.816 61.48 63.801 72.585 50.792 33.232 60.88 58 65 73 51 36 58 1 1 1 1 1 1 6577.3 19740 1730 19503 30348 39210 39210 1 VLTVPCQK Unmodified 943.51609 0.51608756 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 8 0 1 48.356 48.356 2 0.002037 12933 TMT1-7 138.83 95.018 184.63 224.3 158.42 176.98 200.02 182.97 174 225 167 174 205 177 1 1 1 1 1 1 23329 19741 1115 19504 30349 39211 39211 1 VLTWDVGK Unmodified 916.50182 0.5018177 2974 Q9Y2T2 AP3M1 AP-3 complex subunit mu-1 yes yes 0 0 0 0 0 8 0 1 62.118 62.118 2 0.0045747 18359 TMT1-7 124.08 56.91 207.88 246.54 198.51 167.49 170.51 201.94 196 248 205 167 177 194 1 1 1 1 1 1 20577 19742 2974 19505 30350 39212 39212 1 VLVALASEELAK Unmodified 1241.7231 0.72310344 3 A0FGR8-2;A0FGR8;A0FGR8-6;A0FGR8-5 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 0 7 0 1 75.085 75.085 2 2.8831E-13 23381 TMT1-6 169.37 141.63 92.153 131.67 89.756 80.537 82.587 137.29 87 131 94 80 87 131 1 1 1 1 1 1 18364 19743 3 19506 30351 39213 39213 1 VLVALYEEPEKPNSALDFLK Unmodified 2274.2148 0.21475039 2460 Q99417 MYCBP C-Myc-binding protein yes yes 0 0 0 0 1 7.5 0.5 1 1 77.695 77.695 4 6.9774E-14 24374 TMT1-6 114.34 99.928 192.94 255.32 178.61 191.11 256.19 264.52 182 255 188 189 262 255 3 3 3 3 3 3 17327 19744 2460 19507 30352;30353 39214;39215;39216 39214 3 VLVAQHDVYK Unmodified 1170.6397 0.63970816 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 42.812 42.812 3 0.00013648 10874 TMT1-6 81.865 48.658 484.34 732.37 572.17 517.93 577.5 705.2 458 728 593 515 598 677 1 1 1 1 1 1 47410 19745 693 19508 30354;30355 39217;39218 39218 2 VLVCSKPVTYATVIFPGGNK Unmodified 2149.1605 0.16054675 2132 Q86YW5;Q86YW5-3 TREML1 Trem-like transcript 1 protein yes no 0 0 0 0 1 9 0 1 66.766 66.766 4 4.0415E-05 18405 TMT1-8 61.87 41.895 84.958 93.128 69.328 81.761 82.275 144.76 80 94 73 80 87 138 1 1 1 1 1 1 8147.9 19746 2132 19509 30356 39219 39219 1 VLVEDTK Unmodified 802.44363 0.44363412 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 3.25 1.48 1 1 1 1 45.183 45.183 2 0.0018627 12244 TMT1-3 145.04 47.974 9172.7 11089 10507 7961.6 9407.6 12623 8659 11168 10696 8019 9758 12093 6 6 6 6 6 6 1706200 19747 3010 19510 30357;30358;30359;30360 39220;39221;39222;39223;39224;39225 39222 6 VLVEGGPAP Unmodified 837.45962 0.45961853 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 4 0 1 55.993 55.993 2 0.00076087 16653 TMT1-3 129.16 118.09 276.68 389.14 237.63 279.61 245.31 310.67 261 387 254 273 257 298 3 3 3 3 3 3 110250 19748 1000 19511 30361 39226;39227;39228 39227 3 VLVEGPLNNLR Unmodified 1222.7034 0.70337105 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 7 0 1 59.872 59.872 2 0.00014121 17426 TMT1-6 87.298 43.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19749 2328 19512 30362 39229 39229 1 VLVGGGTGFIGTALTQLLNAR Unmodified 2057.1633 0.16332394 2728 Q9NRG7 SDR39U1 Epimerase family protein SDR39U1 yes yes 0 0 0 0 0 9 0 1 93.92 93.92 3 2.4813E-15 28947 TMT1-8 98.169 80.096 39.085 73.281 41.364 37.034 50.083 45.475 37 72 44 37 51 44 2 2 2 2 2 2 4771.8 19750 2728 19513 30363 39230;39231 39231 2 VLVGGTK Unmodified 672.41703 0.41702544 965;2851 Q9UDT6-2;Q9UDT6;P30622-2;P30622-1;P30622 CLIP2;CLIP1 CAP-Gly domain-containing linker protein 2;CAP-Gly domain-containing linker protein 1 no no 0 0 0 0 0 8 0 1 42.606 42.606 2 0.0243 10669 TMT1-7 94.262 94.262 253.59 276.7 246.51 185.65 331.37 306.08 239 280 252 189 335 296 1 1 1 1 1 1 14261 19751 2851;965 19514 30364 39232 39232 1 VLVIGAGGLGCELLK Unmodified 1497.8589 0.85888542 2241 Q8TBC4-2;Q8TBC4 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 0 9 0 1 75.885 75.885 2 1.1392E-06 21981 TMT1-8 99.752 57.153 23.333 28.926 21.313 14.315 43.045 37.148 22 29 22 15 43 36 1 1 1 1 1 1 4961.5 19752 2241 19515 30365 39233 39233 1 VLVIGELGVGK Unmodified 1082.6699 0.66994566 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 8 0 1 69.156 69.156 2 2.7211E-08 21118 TMT1-7 156.92 100.19 208.13 206.21 191.21 167.13 213.13 210.32 196 210 196 167 218 203 2 2 2 2 2 2 29279 19753 1734 19516 30366 39234;39235 39234 2 VLVLSQDYGK Unmodified 1120.6128 0.61282471 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 8 0 1 59.082 59.082 3 0.016308 17150 TMT1-7 58.37 33.515 123.35 113.58 91.028 72.798 83.236 128.74 116 116 94 73 87 123 1 1 1 1 1 1 8066.1 19754 1546 19517 30367 39236 39236 1 VLVNVLTSDQTEDVLEAVAAK Unmodified 2213.1791 0.17909316 1817 Q15036-2;Q15036 SNX17 Sorting nexin-17 yes no 0 0 0 0 0 6 0 1 87.798 87.798 4 0.00012715 28951 TMT1-5 61.767 51.71 15.774 21.75 35.536 45.595 20.132 22.878 15 22 36 44 22 22 1 1 1 1 1 1 3427 19755 1817 19518 30368 39237 39237 1 VLVPEHEKDVLEWIACVR Unmodified 2191.146 0.14595932 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 1 7 0 1 71.578 71.578 4 5.0989E-05 22019 TMT1-6 77.221 60.505 61.384 94.833 62.433 42.607 93.786 75.142 58 94 65 44 94 73 1 1 1 1 1 1 12377 19756 1150 19519 30369 39238 39238 1 VLVQMCK Unmodified 876.45613 0.45612984 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 51.337 51.337 2 0.01203 12312 TMT1-8 114.54 60.014 77.345 85.805 92.579 80.619 69.281 98.227 73 87 94 80 73 94 1 1 1 1 1 1 7837.8 19757 2066 19520 30370 39239 39239 1 VLVQNAAGSQEK Unmodified 1242.6568 0.65681479 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 4.8 1.94 1 1 3 42.217 42.217 2;3;4 1.0719E-43 10935 TMT1-5 221.59 134.41 3201.7 4023.8 3652 2738.6 3386.4 4393.4 3023 4042 3726 2763 3502 4212 6 6 6 6 6 6 1116900 19758 3010 19521 30371;30372;30373;30374;30375 39240;39241;39242;39243;39244;39245;39246 39245 7 VLVSGLQGLGAEVAK Unmodified 1439.8348 0.83477916 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 8 0 2 69.821 69.821 2;3 2.8182E-15 21468 TMT1-7 138.01 115.48 270.46 310.32 267.53 249.68 289.32 317.94 255 313 276 248 298 306 3 3 3 3 3 3 65534 19759 1081 19522 30376;30377 39247;39248;39249 39248 3 VLVSLSAGGR Unmodified 957.56073 0.56072956 598 P09525;P09525-2 ANXA4 Annexin A4 yes no 0 0 0 0 0 9 0 1 51.271 51.271 2 0.028973 12306 TMT1-8 67.507 35.365 175.96 370.54 228.85 221.57 279.33 220.15 167 363 242 220 284 214 1 1 1 1 1 1 29878 19760 598 19523 30378 39250 39250 1 VLVTGATGLLGR Unmodified 1155.6976 0.69755739 2799 Q9NZL9-4;Q9NZL9-2;Q9NZL9;Q9NZL9-3;Q9NZL9-5 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 0 9 0 1 62.38 62.38 2 1.7813E-22 16664 TMT1-8 166.66 103.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19761 2799 19524 30379 39251 39251 1 VLVTTNVCAR Unmodified 1131.607 0.60702783 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2;Q9UMR2-3;Q9NUU7-2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 8 0 1 44.97 44.97 2 9.4759E-05 11608 TMT1-7 139.98 104.54 77.196 116.69 91.46 64.149 76.818 114 73 116 94 65 80 109 1 1 1 1 1 1 11003 19762 2752 19525 30380 39252 39252 1 VLVVGAGGIGCELLK Unmodified 1483.8432 0.84323535 2847 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 yes yes 0 0 0 0 0 8 0 2 72.699 72.699 2;3 4.3335E-27 22555 TMT1-7 183 149.04 46.549 73.715 48.93 35.804 33.371 76.866 44 73 51 36 36 73 1 1 1 1 1 1 7831.6 19763 2847 19526 30381;30382 39253;39254 39253 2 VLVVGDAAVGK Unmodified 1026.6073 0.6073454 117 O14966;O14966-2 RAB29 Ras-related protein Rab-7L1 yes no 0 0 0 0 0 7 0 1 56.668 56.668 2 1.0001E-05 16181 TMT1-6 125.48 67.89 77.201 85.403 117.22 62.321 92.367 90.106 73 87 116 65 94 87 1 1 1 1 1 1 7897.8 19764 117 19527 30383 39255 39255 1 VLVVSAK Unmodified 714.46398 0.46397563 2637 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 0 0 9 0 1 49.054 49.054 2 0.013713 11374 TMT1-8 107.43 40.395 409.85 580.41 415.56 409.03 355.09 626.27 387 578 435 403 378 597 2 2 2 2 2 2 35925 19765 2637 19528 30384 39256;39257 39256 2 VLWLADCDVSDSSCSSLAATLLANHSLR Unmodified 3060.4645 0.46446928 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 8 0 1 80.692 80.692 4 2.0172E-12 25606 TMT1-7 89.803 87.719 77.571 86.432 54.168 67.586 70.394 83.271 73 87 58 66 73 80 2 2 2 2 2 2 33122 19766 681 19529 30385 39258;39259 39258 2 VLYAYGYYTGEPSKR Unmodified 1765.8675 0.86753585 110 O14880 MGST3 Microsomal glutathione S-transferase 3 yes yes 0 0 0 0 1 8 0 1 53.707 53.707 3 0.00011435 15117 TMT1-7 84.173 64.335 100.63 123.24 114.11 78.681 104.13 182.51 95 124 116 80 109 174 2 2 2 2 2 2 14425 19767 110 19530 30386 39260;39261 39261 2 VLYGLFCK Unmodified 998.52592 0.52592396 2681 Q9HBI0 PARVG Gamma-parvin yes yes 0 0 0 0 0 9 0 1 70.877 70.877 3 0.0101 20020 TMT1-8 66.993 32.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19768 2681 19531 30387 39262 39262 1 VLYLVQGEK Unmodified 1047.5964 0.59644637 2888 Q9UJW0-3;Q9UJW0 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 0 8 0 1 61.138 61.138 2 0.00050952 18001 TMT1-7 135.79 84.219 108.18 137.92 96.662 109.57 202.19 148.8 102 138 102 109 203 145 1 1 1 1 1 1 12131 19769 2888 19532 30388 39263 39263 1 VLYNLEVLSSK Unmodified 1263.7075 0.70745338 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 8 0 1 71.849 71.849 3 0.0027696 22169 TMT1-7 75.695 50.841 77.573 55.139 80.309 57.275 70.868 83.258 73 58 80 58 73 80 1 1 1 1 1 1 7562.9 19770 2940 19533 30389 39264 39264 1 VLYNLFTK Unmodified 996.56442 0.56441796 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2;Q9NVD7 PARVB;PARVA Beta-parvin;Alpha-parvin yes no 0 0 0 0 0 6.33 3.77 1 2 71.558 71.558 2;3 0.00027711 20294 TMT1-8 157.86 76.312 2751.2 3279.2 3355 2346.7 3025 3958.1 2598 3309 3392 2382 3125 3794 3 3 3 3 3 3 409160 19771 2682 19534 30390;30391;30392 39265;39266;39267;39268 39267 4 VLYPNDNFFEGK Unmodified 1441.6878 0.68778057 648;515 P11216;P06737-2;P06737 PYGB;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form no no 0 0 0 0 0 6.5 0.5 1 1 67.091 67.091 3 0.0027988 20848 TMT1-5 70.412 41.509 346.97 429.25 291.58 293.75 310.5 342.92 327 430 307 290 321 330 3 3 3 3 3 3 74018 19772 648;515 19535 30393;30394 39269;39270;39271 39269 3 VLYVQDSLEGEAR Unmodified 1477.7413 0.7412727 1150 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 0 4 0 1 57.572 57.572 3 1.9604E-05 17223 TMT1-3 102.87 98.63 54.161 42.182 58.744 27.112 57.612 52.722 51 44 58 29 58 51 1 1 1 1 1 1 7750.6 19773 1150 19536 30395 39272 39272 1 VMAGALEGDLFIGPK Unmodified 1516.796 0.79595081 1087 P42025 ACTR1B Beta-centractin yes yes 0 0 0 0 0 6.67 0.471 1 2 74.693 74.693 3 4.1551E-06 22981 TMT1-6 100.19 0 138.82 149.6 165.59 121.86 144.24 266.65 131 152 167 123 152 254 3 3 3 3 3 3 25341 19774 1087 19537 30396;30397;30398 39273;39274;39275;39276 39274 4 VMALELGPHK Unmodified 1093.5954 0.59540051 2098 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 0 7 0 1 52.305 52.305 3 0.0013486 14422 TMT1-6 88.681 73.415 123.05 151.58 110.56 117.57 139.78 188.96 116 152 116 116 145 181 1 1 1 1 1 1 12737 19775 2098 19538 30399 39277 39277 1 VMCIEHEIK Unmodified 1157.5573 0.55730044 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 5 0 1 47.301 47.301 3 0.0026844 12911 TMT1-4 83.647 39.996 160.14 300.09 242.9 124.51 222.88 227.09 152 296 247 131 226 219 1 1 1 1 1 1 10805 19776 1091 19539 30400 39278 39278 1 VMEGTVAAQDEFYR Unmodified 1614.7348 0.73480712 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 3 0 2 55.845 55.845 2;3 3.3996E-06 17566 TMT1-2 104.17 73.562 68.901 102.97 54.648 35.522 88.38 59.306 65 102 58 37 88 58 2 2 2 2 2 2 20908 19777 1083 19540 30401;30402 39279;39280 39280 2 VMEHFIK Unmodified 902.46841 0.46840908 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7.5 0.5 1 1 46.9 46.9 3 0.010378 12314 TMT1-6 80.18 34.867 485.88 645.1 567.12 530.14 525.52 923.08 459 646 584 525 556 880 3 3 3 3 3 3 116680 19778 640 19541 30403;30404 39281;39282;39283 39281 3 VMETQAQVDELK Unmodified 1389.681 0.68098063 1255 P51809;P51809-2;P51809-3 VAMP7 Vesicle-associated membrane protein 7 yes no 0 0 0 0 0 4 0 1 53.131 53.131 3 0.0032626 15486 TMT1-3 68.42 35.473 191.95 213.55 199.2 198.14 224.08 215.33 181 216 205 196 230 208 1 1 1 1 1 1 35687 19779 1255 19542 30405 39284 39284 1 VMHQIISK Unmodified 954.53207 0.53207197 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 9 0 1 41.736 41.736 3 0.0090024 8702 TMT1-8 61.962 40.514 161.52 174.42 116.92 109.67 133.07 181.69 152 176 123 109 138 174 1 1 1 1 1 1 8481.2 19780 2309 19543 30406 39285 39285 1 VMLETPEYR Unmodified 1136.5536 0.55359527 2751 Q9NUQ9;Q9NUQ9-2;Q9H0Q0 FAM49B;FAM49A Protein FAM49B;Protein FAM49A yes no 0 0 0 0 0 4 0 1 50.973 50.973 2 0.00031309 14661 TMT1-3 98.582 58.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19781 2751 19544 30407 39286 39286 1 VMLGETNPADSKPGTIR Unmodified 1784.9091 0.90908309 846;724 P22392-2;P22392;O60361;P15531;P15531-2 NME2;NME2P1;NME1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A no no 0 0 0 0 1 6.5 0.5 1 1 48.352 48.352 3 1.0737E-18 13454 TMT1-5 135.15 114.37 290.81 423.4 358.81 256.33 401.67 509.81 275 422 367 261 412 489 2 2 2 2 2 2 64135 19782 846;724 19545 30408;30409 39287;39288 39287 2 VMLLGDTGVGK Unmodified 1088.59 0.58998078 2366 Q96AX2;Q96AX2-3 RAB37 Ras-related protein Rab-37 yes no 0 0 0 0 0 8 0 1 61.915 61.915 2 2.675E-06 18312 TMT1-7 129.85 100.76 54.115 64.72 47.295 83.749 46.359 91.419 51 65 51 80 51 87 1 1 1 1 1 1 5420.1 19783 2366 19546 30410 39289 39289 1 VMLVNSMNTVK Unmodified 1234.6414 0.64136442 776 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 0 0 0 8.5 0.5 1 1 58.108 58.108 2;3 2.6701E-06 16833 TMT1-7 129.89 88.86 508.6 711.19 659.26 483.15 581.83 656.04 481 711 671 488 599 631 3 3 3 3 3 3 83209 19784 776 19547 30411;30412 39290;39291;39292 39290 3 VMNLISK Unmodified 803.45751 0.45751004 1224 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 0 0 0 9 0 1 57.96 57.96 2 0.039263 14840 TMT1-8 84.568 29.037 108.01 145.03 117.86 134.21 103.45 128.17 102 145 123 131 109 123 1 1 1 1 1 1 27977 19785 1224 19548 30413 39293 39293 1 VMNLIVFHSR Unmodified 1214.6594 0.65939775 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 9 0 1 58.287 58.287 3 0.020234 15011 TMT1-8 49.777 31.105 85.06 62.113 78.446 88.859 82.755 121.29 80 65 80 87 87 116 1 1 1 1 1 1 7114.2 19786 1314 19549 30414 39294 39294 1 VMPLIIQGFK Unmodified 1144.6678 0.66783717 1208 P49903-2;P49903-4;P49903-3;P49903 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 0 9 0 1 75.8 75.8 2 5.6977E-05 21950 TMT1-8 119.29 81.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19787 1208 19550 30415 39295 39295 1 VMQEEIFGPILPIVPVK Unmodified 1908.0794 0.07944288 1249 P51648;P51648-2 ALDH3A2 Fatty aldehyde dehydrogenase yes no 0 0 0 0 0 8 0 1 88.011 88.011 3 0.0019424 28365 TMT1-7 58.83 51.599 23.333 28.927 21.301 14.587 28.63 30.097 22 29 22 15 29 29 1 1 1 1 1 1 2519.4 19788 1249 19551 30416 39296 39296 1 VMQEQGTHPK Unmodified 1153.555 0.55499226 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 3.75 1.64 1 1 2 29.809 29.809 3;4 5.7689E-05 6024 TMT1-4 124.42 83.834 1559.4 1705.9 1392.2 1078.8 1459.8 2103.1 1469 1724 1433 1088 1512 2012 4 4 4 4 4 4 165550 19789 1019 19552 30417;30418;30419;30420 39297;39298;39299;39300 39299 4 VMQIIVK Unmodified 829.50955 0.50954561 1585 Q04759;Q04759-2 PRKCQ Protein kinase C theta type yes no 0 0 0 0 0 9 0 1 59.152 59.152 2 0.0057172 15389 TMT1-8 97.071 41.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19790 1585 19553 30421 39301 39301 1 VMQVLNADAIVVK Unmodified 1398.7905 0.7904715 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 8 0 1 70.059 70.059 3 0.0024414 21525 TMT1-7 67.275 42.041 37.883 74.075 62.357 74.912 61.68 83.52 36 73 65 73 65 80 1 1 1 1 1 1 5748.5 19791 2071 19554 30422 39302 39302 1 VMTIAPGLFGTPLLTSLPEK Unmodified 2084.1591 0.15914976 2485 Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 0 0 0 0 0 9 0 2 88.881 88.881 3;4 8.1523E-10 26978 TMT1-8 84.249 57.22 76.102 131.81 82.222 81.252 68.446 121.7 72 130 87 80 73 116 2 2 2 2 2 2 38934 19792 2485 19555 30423;30424 39303;39304 39304 2 VMTIPYQPMPASSPVICAGGQDR Unmodified 2474.1756 0.17562124 1843 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 0 8 0 1 67.49 67.49 3 0.0019282 20500 TMT1-7 47.281 27.383 38.149 34.88 50.918 44.417 34.038 45.933 36 36 51 44 36 44 1 1 1 1 1 1 8172.2 19793 1843 19556 30425 39305 39305 1 VMVELLGSYTEDNASQAR Unmodified 1981.9415 0.94150543 2077 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 0 0 6 0 1 71.231 71.231 3 8.5936E-05 22519 TMT1-5 74.732 54.912 38.156 43.533 42.462 52.569 34.213 29.938 36 44 44 51 36 29 1 1 1 1 1 1 5727.8 19794 2077 19557 30426 39306 39306 1 VMVLDFVTPTPLGTR Unmodified 1644.8909 0.89091383 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 0 9 0 1 79.144 79.144 3 0.00056591 23234 TMT1-8 59.68 40.58 38.296 35.288 25.945 70.096 26.334 22.701 36 36 29 66 29 22 1 1 1 1 1 1 5608.7 19795 1912 19558 30427 39307 39307 1 VMVSISLK Unmodified 875.51502 0.51502492 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 9 0 1 61.59 61.59 2 0.00030491 16400 TMT1-8 157.58 63.317 276.68 355.7 264.88 247.27 309.31 409.05 261 356 276 246 320 392 2 2 2 2 2 2 45881 19796 129 19559 30428 39308;39309 39309 2 VMVTNVTSLLK Unmodified 1203.6897 0.68969482 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 0 0 0 5 4 1 1 69.984 69.984 2 1.053E-22 19420 TMT1-8 196.27 114.72 1815.7 2427.7 2054.3 1829.6 1630 3024.6 1715 2429 2117 1814 1738 2881 4 4 4 4 4 4 581330 19797 3010;3014 19560 30429;30430 39310;39311;39312;39313 39311 4 VMVTNVTSLLK Oxidation (M) 1219.6846 0.68460945 3010;3014 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 no no 0 0 1 0 0 9 0 3 66.212 66.212 2;3 0.00017655 17529 TMT1-8 103.21 62.331 463.13 585.42 473.51 382.72 408.09 671.66 437 587 488 383 429 641 3 3 3 3 3 3 109490 19798 3010;3014 19560 30431;30432;30433 39314;39315;39316 39314 344 3 VMYGFCSVK Unmodified 1089.4987 0.49872293 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 9 0 1 57.427 57.427 2 0.00095923 14669 TMT1-8 128.69 78.853 54.071 73.231 47.529 67.041 62.299 76.04 51 73 51 65 65 73 1 1 1 1 1 1 7735.8 19799 1897 19561 30434 39317 39317 1 VNAADIENR Unmodified 1000.4938 0.49377221 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 2.5 0.5 1 1 37.778 37.778 2 5.3598E-05 10135 TMT1-1 152.86 88.651 435.48 593.42 424.86 349.77 454.69 546.68 411 592 442 351 468 525 3 3 3 3 3 3 89274 19800 936 19562 30435;30436 39318;39319;39320 39318 3 VNAFSNFFSGPIVVHCSAGVGR Unmodified 2321.1375 0.13751989 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 9 0 1 68.561 68.561 3 1.353E-10 19110 TMT1-8 83.245 70.9 38.062 34.638 65.787 51.025 42.404 37.166 36 36 65 51 44 36 1 1 1 1 1 1 13538 19801 570 19563 30437 39321 39321 1 VNAIEHVIIPR Unmodified 1259.735 0.73500553 3030 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 0 0 7 0 1 52.542 52.542 3 0.004003 14498 TMT1-6 71.555 37.669 61.55 80.183 47.073 67.073 62.041 83.51 58 80 51 65 65 80 1 1 1 1 1 1 9530.2 19802 3030 19564 30438 39322 39322 1 VNAWQAK Unmodified 815.42899 0.42898711 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 8 0 1 43.915 43.915 2 6.567E-05 11192 TMT1-7 124.89 90.809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 19803 666;31 19565 30439 39323 39323 1 VNCFCLVFPFR Unmodified 1457.6948 0.69479698 2922 Q9UN19;Q9UN19-2 DAPP1 Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide yes no 0 0 0 0 0 9 0 1 78.367 78.367 2 0.0093332 22936 TMT1-8 72.643 40.709 69.085 63.548 57.048 34.723 65.141 36.517 65 65 58 36 65 36 1 1 1 1 1 1 6563.4 19804 2922 19566 30440 39324 39324 1 VNCSFYFK Unmodified 1063.4797 0.47970205 619 P0DN76;Q01081;Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 0 0 0 0 0 9 0 1 56.782 56.782 2 0.0074041 14460 TMT1-8 110.87 71.329 92.635 77.967 54.252 75.416 60.595 114.46 87 80 58 73 65 109 1 1 1 1 1 1 6441.5 19805 619 19567 30441 39325 39325 1 VNDDIIVNWVNETLR Unmodified 1798.9214 0.92136233 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 4.75 2.28 1 1 1 1 86.866 86.866 2;3 8.2014E-15 27411 TMT1-6 130.01 87.218 400.98 583.44 460.96 358.27 430.19 517.53 379 581 475 360 444 497 7 7 7 6 7 7 293670 19806 690 19568 30442;30443;30444;30445 39326;39327;39328;39329;39330;39331;39332 39331 7 VNDDVGIDWTNENDR Unmodified 1760.7602 0.76017024 1776 Q14432 PDE3A cGMP-inhibited 3',5'-cyclic phosphodiesterase A yes yes 0 0 0 0 0 2 0 1 56.754 56.754 3 2.06E-06 17579 TMT1-1 102.38 98.99 23.216 44.789 27.593 22.007 20.96 30.316 22 44 29 22 22 29 1 1 1 1 1 1 6651.6 19807 1776 19569 30446 39333 39333 1 VNDFLAEIFKK Unmodified 1322.7234 0.72343779 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 1 9 0 1 77.464 77.464 3 0.0012982 22584 TMT1-8 87.498 63.894 138.94 134.8 159.19 115.5 95.916 159.3 131 138 160 116 102 152 1 1 1 1 1 1 11608 19808 1744 19570 30447 39334 39334 1 VNDVVPWVLDVILNK Unmodified 1721.9716 0.97160699 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 9 0 1 104.67 104.67 3 0.0040933 32660 TMT1-8 53.169 31.918 15.852 37.304 59.543 20.079 22.213 15.356 15 37 58 22 22 15 1 2 2 2 1 1 2173.3 19809 1994 19571 30448 39335;39336 39335 2 VNEAREELMR Unmodified 1245.6136 0.61356977 1519 P84077;P61204;P61204-2 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 0 0 0 0 1 3 0 1 38.37 38.37 3 0.0010143 10635 TMT1-2 97.813 68.146 170.01 178.95 129.68 180.61 98.126 221.06 160 181 138 174 109 210 2 2 2 2 2 2 14038 19810 1519 19572 30449 39337;39338 39337 2 VNEASGDGDGEDAVVILEK Unmodified 1915.9011 0.9010804 2379 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 0 2.5 0.5 1 1 62.541 62.541 3 1.3163E-09 19869 TMT1-1 93.776 69.945 61.511 87.629 47.309 51.743 62.746 83.49 58 87 51 51 65 80 2 2 2 2 2 2 13177 19811 2379 19573 30450;30451 39339;39340 39339 2 VNEISVEVDSDPR Unmodified 1457.6998 0.69980182 917 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 0 2 0 1 50.964 50.964 2 0.026335 15331 TMT1-1 62.89 38.508 30.799 20.732 35.87 37.78 27.82 22.658 29 22 36 37 29 22 1 1 1 1 1 1 3722.1 19812 917 19574 30452 39341 39341 1 VNEMIIGGGMAFTFLK Unmodified 1726.8786 0.87863458 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 9 0 1 85.969 85.969 3 4.8078E-17 25879 TMT1-8 129.88 92.883 123.92 152.03 144.14 91.756 127.35 128.55 117 153 146 94 130 124 2 2 2 2 2 2 22484 19813 397 19575 30453 39342;39343 39342 2 VNFAMNVGK Unmodified 978.49569 0.49568646 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 9 0 1 55.761 55.761 2 8.3136E-10 14097 TMT1-8 176.4 107.98 960.22 1358.6 1032.7 867.78 1031.1 1374.5 907 1354 1070 868 1069 1317 3 3 3 3 3 3 228870 19814 706;707 19576 30454 39344;39345;39346 39345 3 VNFTVDQIR Unmodified 1090.5771 0.57710791 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6 0 1 53.367 53.367 2 2.373E-06 15477 TMT1-5 165.15 108.49 417.35 689.96 324.32 462.89 512.1 520.52 394 680 359 450 527 502 1 1 1 1 1 1 103990 19815 685 19577 30455 39347 39347 1 VNGSYEALSGGSTSEGFEDFTGGVTEWYELR Unmodified 3343.4793 0.47931052 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5 0 1 82.39 82.39 3 0.00027431 26703 TMT1-4 32.798 27.311 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19816 536 19578 30456 39348 39348 1 VNHLYSDLSDALVIFQLYEK Unmodified 2366.2158 0.21581302 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 8.67 0.471 1 2 89.567 89.567 3;4 2.0135E-23 29012 TMT1-7 130.05 109.16 72.749 135.98 101.22 86.861 116.85 136.31 69 134 105 87 120 131 3 3 3 3 3 3 57627 19817 690 19579 30457;30458;30459 39349;39350;39351 39349 3 VNHVTLSQPK Unmodified 1121.6193 0.61930707 1399 P61769 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes yes 0 0 0 0 0 8 0.816 1 1 1 36.252 36.252 3 7.3451E-07 6883 TMT1-8 145.46 89.74 1070.9 1410.3 1316.9 1061.9 1317.9 1566.7 1012 1414 1344 1066 1358 1505 8 8 8 8 8 8 117520 19818 1399 19580 30460;30461;30462 39352;39353;39354;39355;39356;39357;39358;39359 39358 8 VNIEGGAIALGHPLGASGCR Unmodified 1947.9949 0.9948784 2559 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 0 7 0 1 54.091 54.091 3 0.00033553 15113 TMT1-6 59.614 39.232 53.896 80.299 70.965 65.81 53.451 122.13 51 80 73 65 58 116 1 1 1 1 1 1 15015 19819 2559 19581 30463 39360 39360 1 VNIIGEVVDQGSTNLK Unmodified 1684.8996 0.89956426 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 6 0 1 70.127 70.127 3 6.4453E-12 22050 TMT1-5 125.52 114.05 115.58 120.92 129.06 108.65 148.84 150.32 109 123 131 109 152 145 2 2 2 2 2 2 22759 19820 2854 19582 30464 39361;39362 39361 2 VNIIPLIAK Unmodified 979.643 0.64300263 1883 Q16181;Q16181-2;Q6ZU15 SEPT7;SEPT14 Septin-7;Septin-14 yes no 0 0 0 0 0 9 0 2 69.851 69.851 2 0.00014527 19933 TMT1-8 148.38 0 1063.8 1493.9 1179.9 1085.3 1026.2 1500.4 1005 1490 1223 1075 1078 1435 4 4 4 4 4 4 276350 19821 1883 19583 30465;30466 39363;39364;39365;39366 39365 4 VNIIPVIGK Unmodified 951.6117 0.6117025 2288 Q8WYJ6 SEPT1 Septin-1 yes yes 0 0 0 0 0 9 0 2 65.666 65.666 2;3 0.01253 17948 TMT1-8 56.563 34.713 153.88 181.06 132.51 115.94 156.88 150.09 145 182 138 116 160 145 2 2 2 2 2 2 32910 19822 2288 19584 30467;30468 39367;39368 39367 2 VNILFDFVK Unmodified 1093.6172 0.61718181 1307 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 0 9 0 1 82.104 82.104 3 0.00054718 24356 TMT1-8 105.4 78.282 30.656 51.634 33.675 45.44 34.284 37.398 29 51 36 44 36 36 1 1 1 1 1 1 5076 19823 1307 19585 30469 39369 39369 1 VNIVPLIAK Unmodified 965.62735 0.62735256 2486 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 0 9 0 1 66.698 66.698 2 0.0017911 18328 TMT1-8 114.28 0 192.44 252.86 264.1 218.47 215.97 272.06 182 254 268 218 225 261 2 2 2 2 2 2 34358 19824 2486 19586 30470 39370;39371 39370 2 VNIVPVIAK Unmodified 951.6117 0.6117025 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 9 0 1 61.635 61.635 2 5.4747E-07 16355 TMT1-8 170.66 93.607 327.25 526.75 458.07 289.32 483.29 525.61 310 523 466 298 492 506 1 1 1 1 1 1 54031 19825 1812 19587 30471 39372 39372 1 VNKDDIQK Unmodified 958.50836 0.50835964 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 3.5 2.5 1 1 38.332 38.332 3 0.0042995 9339 TMT1-5 96.665 32.368 8130.7 9224 9390.4 6920.7 9537.9 8000 7673 9332 9513 7008 9685 7760 3 3 3 3 3 3 1007600 19826 1019 19588 30472;30473 39373;39374;39375 39374 3 VNKPPYPK Unmodified 941.53345 0.53345218 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 1 8.67 0.471 1 2 38.765 38.765 3 0.0052734 7692 TMT1-8 73.26 36.836 2837.8 5056.4 2984.2 2800.8 3881.2 4280.1 2685 4979 3167 2792 3974 4119 4 4 4 4 4 4 316110 19827 690;691 19589 30474;30475;30476 39376;39377;39378;39379;39380 39378 5 VNLAELFK Unmodified 932.53312 0.53311783 947 P30044-2;P30044;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 0 8.5 0.5 1 1 72.316 72.316 2 0.00078843 22441 TMT1-7 148.05 112.95 908.63 1475.6 1308.5 1083.8 1280 1331.2 861 1465 1340 1085 1315 1283 3 3 3 3 3 3 176610 19828 947 19590 30477;30478 39381;39382;39383 39382 3 VNLDALTQHLDK Unmodified 1365.7252 0.72522871 2227 Q8NFV4;Q8NFV4-4;Q8NFV4-6 ABHD11 Alpha/beta hydrolase domain-containing protein 11 yes no 0 0 0 0 0 6 0 1 59.313 59.313 3 1.2737E-05 17783 TMT1-5 108.17 64.273 46.146 111.45 84.668 57.162 63.046 67.491 44 109 87 58 65 65 1 1 1 1 1 1 11255 19829 2227 19591 30479 39384 39384 1 VNLFTDFDK Unmodified 1097.5393 0.53932542 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 7 0 2 69.167 69.167 2;3 0.0041919 21101 TMT1-6 77.379 55.231 230.07 367.24 335.24 236.38 316.64 332.08 218 365 341 240 324 320 2 2 2 2 2 2 27406 19830 1328 19592 30480;30481 39385;39386 39386 2 VNLLQIVR Unmodified 953.6022 0.60220045 277 O75438 NDUFB1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 yes yes 0 0 0 0 0 9 0 1 63.781 63.781 2 0.013685 17198 TMT1-8 84.097 32.641 68.414 148.02 98.305 63.598 84.429 106.32 65 145 102 65 87 102 1 1 1 1 1 1 12552 19831 277 19593 30482 39387 39387 1 VNLSAAQTLR Unmodified 1071.6037 0.60365701 2541 Q9BUL8 PDCD10 Programmed cell death protein 10 yes yes 0 0 0 0 0 7 0 1 46.896 46.896 2 0.010275 12357 TMT1-6 83.883 32.69 215.47 366.21 264.84 216.61 312.61 323.67 204 362 275 218 319 312 2 2 2 2 2 2 55528 19832 2541 19594 30483 39388;39389 39389 2 VNLSCGGVSHPIR Unmodified 1394.7089 0.70886714 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 8 1 1 1 38.162 38.162 3 1.6414E-08 8862 TMT1-6 123.36 93.181 230.49 329.57 295.71 275.79 322.37 477.96 218 329 304 274 336 457 2 2 2 2 2 2 45815 19833 377 19595 30484;30485 39390;39391 39390 2 VNLVSGHVK Unmodified 951.55016 0.55016488 1406 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 0 0 0 8 0 1 40.453 40.453 3 0.0030439 9827 TMT1-7 81.099 60.197 138.85 165.85 147.96 131.45 155.1 181.06 131 167 152 131 160 174 1 1 1 1 1 1 7173.7 19834 1406 19596 30486 39392 39392 1 VNMEDLR Unmodified 875.4171 0.41710179 1752;2757 Q14141-2;Q14141-4;Q14141;Q92599-3;Q92599-2;Q92599-4;Q92599;Q9NVA2 SEPT6;SEPT8;SEPT11 Septin-6;Septin-8;Septin-11 no no 0 0 0 0 0 4 0 1 44.289 44.289 2 0.0039055 12001 TMT1-3 138.26 72.382 301.31 444.7 379.12 280.48 448.27 552.19 285 443 388 285 459 530 1 1 1 1 1 1 52415 19835 1752;2757 19597 30487 39393 39393 1 VNNASLIGLGYTQTLRPGVK Unmodified 2100.1691 0.1691376 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 1 9 0 1 60.088 60.088 4 1.0216E-12 15724 TMT1-8 93.215 64.582 193.62 252.02 245.94 262.81 298.58 304.88 183 253 253 259 307 294 1 1 1 1 1 1 55117 19836 2959 19598 30488 39394 39394 1 VNNSSLIGLGYTQTLKPGIK Unmodified 2102.1736 0.17355427 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 1 9 0 1 62.598 62.598 4 1.7729E-15 16715 TMT1-8 108.47 85.821 299.95 479.42 216.85 257.56 379.47 453.95 283 473 239 254 389 436 2 2 2 2 2 2 60438 19837 833 19599 30489 39395;39396 39395 2 VNNSSLIGVGYTQTLRPGVK Unmodified 2102.1484 0.14840216 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 1 8 0 1 58.149 58.149 3 0.012354 16834 TMT1-7 44.585 31.355 54.006 56.86 72.383 65.538 63.431 45.094 51 58 73 65 65 44 1 1 1 1 1 1 8037.4 19838 1119 19600 30490 39397 39397 1 VNPCIGGVILFHETLYQK Unmodified 2087.0874 0.087381804 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 8.33 0.471 2 1 68.694 68.694 3 1.5157E-26 20967 TMT1-7 132.59 100.79 131.21 142.26 189.57 104.32 186.97 172.69 124 145 188 109 189 167 2 2 2 2 2 2 50747 19839 459 19601 30491;30492;30493 39398;39399;39400;39401 39398 4 VNPDLLKK Unmodified 925.55967 0.55966693 614 P0C7P3-2;P0C7P3 SLFN14 Schlafen family member 14 yes no 0 0 0 0 1 8 0 1 48.141 48.141 3 0.033719 12894 TMT1-7 62.303 23.155 261.99 261.57 289.98 176.61 151.54 346.39 247 267 291 180 164 329 1 1 1 1 1 1 11908 19840 614 19602 30494 39402 39402 1 VNPFRPGDSEPPPAPGAQR Unmodified 1987.9864 0.98642221 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 1 6.5 0.5 1 1 43.799 43.799 3 1.8866E-44 11662 TMT1-5 180.14 162.22 692.42 779.44 545.14 673.5 469.7 894.83 652 785 578 654 508 852 5 5 5 5 5 5 146490 19841 1881 19603 30495;30496 39403;39404;39405;39406;39407 39404 5 VNPIQGLASK Unmodified 1025.5869 0.58694431 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 54.432 54.432 2 1.1264E-06 15352 TMT1-7 163.38 120.14 552.33 809.97 620.3 709.68 748.3 835.71 522 806 650 696 774 804 3 3 3 3 3 3 137560 19842 677 19604 30497;30498 39408;39409;39410 39408 3 VNPLSLVEIILHVVR Unmodified 1700.0349 0.034875949 2930 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 0 9 0 1 100.82 100.82 3 1.2774E-19 31332 TMT1-8 142.95 126.81 22.05 52.159 36.973 37.694 51.356 37.977 21 51 37 37 52 37 3 3 2 2 3 3 9178.4 19843 2930 19605 30499 39411;39412;39413 39412 3 VNPTVFFDIAVDGEPLGR Unmodified 1944.9945 0.99452728 1461 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 0 0 5.75 2.95 1 1 1 1 86.005 86.005 3 4.4209E-43 28256 TMT1-5 195.17 176.59 368.04 514.28 466.43 388.88 451.58 554.23 348 514 476 389 467 532 9 9 8 9 9 9 415290 19844 1461 19606 30500;30501;30502;30503 39414;39415;39416;39417;39418;39419;39420;39421;39422 39416 9 VNPTVFFDIAVDGEPLGR Acetyl (N-term) 1987.0051 0.005091963 1461 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 1 0 0 0 0 5.4 1.02 1 2 1 1 103.73 103.73 2 2.6547E-87 33496 TMT1-4 134.08 94.783 2.141 8.3629 1.7723 5.265 10.211 4.2102 2 8 2 5 10 4 2 4 2 3 4 3 26538 19845 1461 19606 30504;30505;30506;30507;30508 39423;39424;39425;39426;39427;39428;39429;39430 39427 8 VNQAIWLLCTGAR Unmodified 1500.7871 0.78711746 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 9 0 1 69.399 69.399 2 8.2377E-16 19422 TMT1-8 153.54 112.25 30.489 66.277 49.452 35.916 25.781 84.544 29 65 51 36 29 80 1 1 1 1 1 1 9600 19846 1136 19607 30509 39431 39431 1 VNQIGSVTEAIQACK Unmodified 1616.8192 0.81920545 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 7 0 1 59.858 59.858 2 2.0124E-16 17432 TMT1-6 142.51 112.18 46.734 34.295 51.314 35.351 49.904 52.942 44 36 51 36 51 51 1 1 1 1 1 1 10521 19847 581 19608 30510 39432 39432 1 VNQIGSVTESLQACK Unmodified 1632.8141 0.81412007 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 5 2.35 1 2 1 57.874 57.874 3 1.6621E-43 16908 TMT1-5 207.72 0 1718.1 2547.9 2129.3 1621 1791.6 2802.6 1625 2537 2184 1630 1876 2677 5 5 5 5 5 5 471330 19848 514 19609 30511;30512;30513;30514 39433;39434;39435;39436;39437;39438 39434 6 VNQLVQTLIVQPDR Unmodified 1621.9152 0.91515474 1530 P98171;P98171-2 ARHGAP4 Rho GTPase-activating protein 4 yes no 0 0 0 0 0 8 0 1 70.855 70.855 3 1.9833E-05 21785 TMT1-7 93.716 64.389 77.1 108.87 114.35 95.306 91.106 82.68 73 109 116 95 94 80 2 2 2 2 2 2 10291 19849 1530 19610 30515 39439;39440 39439 2 VNQPASFAVSLNGAK Unmodified 1501.7889 0.7888916 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 8 0 1 57.625 57.625 3 5.4436E-18 16641 TMT1-7 153.2 122.72 342.94 462.82 400.13 289.83 349.3 497.45 324 463 409 293 363 476 2 2 2 2 2 2 80154 19850 831 19611 30516 39441;39442 39442 2 VNSEQEHFLIVPFGLLYSEVTASSLVK Unmodified 3005.575 0.57498923 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 0 8 0 1 91.439 91.439 4 0.022618 29565 TMT1-7 30.893 24.666 38.326 35.371 20.837 14.625 28.079 46.103 36 36 22 15 29 44 1 1 1 1 1 1 4103 19851 1023 19612 30517 39443 39443 1 VNSLGETAER Unmodified 1074.5306 0.53055165 1737 Q13813-3;Q13813;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 0 3 0 1 36.073 36.073 2 0.0065498 9764 TMT1-2 89.266 62.265 61.484 95.11 45.468 83.006 91.672 82.664 58 94 51 80 94 80 1 1 1 1 1 1 10802 19852 1737 19613 30518 39444 39444 1 VNSLPEVLPILNSDEPK Unmodified 1862.9989 0.99894395 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 75.951 75.951 3 6.2035E-08 24337 TMT1-5 101.67 74.699 77.253 93.103 101.92 55.429 100.51 105.86 73 94 102 58 102 102 1 1 1 1 1 1 23045 19853 856 19614 30519 39445 39445 1 VNSYWFITADHLIEK Unmodified 1834.9254 0.92538508 2711 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 yes yes 0 0 0 0 0 8 0 1 72.882 72.882 3 0.0011232 22648 TMT1-7 66.826 42.033 23.185 52.258 26.485 36.822 50.386 36.938 22 51 29 36 51 36 1 1 1 1 1 1 4328.4 19854 2711 19615 30520 39446 39446 1 VNTELMK Unmodified 833.43169 0.43168922 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 6 0 1 46.407 46.407 2 0.0010573 12726 TMT1-5 111.04 55.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19855 105 19616 30521 39447 39447 1 VNTFSALANIDLALEQGDALALFR Unmodified 2561.349 0.34895246 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 8 0 1 101.16 101.16 3 6.5256E-10 32977 TMT1-7 88.504 76.841 9.4683 16.083 18.079 8.6156 7.6502 9.3757 9 16 18 9 8 9 2 2 2 2 2 2 4032 19856 1139 19617 30522 39448;39449 39449 2 VNTLIRPDGEK Unmodified 1240.6776 0.67755023 1441 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 1 6 0 1 43.732 43.732 3 0.0078228 11648 TMT1-5 70.332 41.356 280.09 611.08 377.15 491.6 503.62 485.58 266 598 404 479 519 469 1 1 1 1 1 1 34628 19857 1441 19618 30523 39450 39450 1 VNTPTTTVYR Unmodified 1150.5982 0.59823728 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 5 0 1 38.547 38.547 2 9.8404E-05 9470 TMT1-4 94.66 63.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19858 902 19619 30524 39451 39451 1 VNVAGLVLAGSADFK Unmodified 1459.8035 0.80347903 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 8.5 0.5 1 1 76.496 76.496 3 2.0512E-05 24043 TMT1-7 90.707 58.548 30.418 50.971 74.267 33.839 57.559 45.262 29 51 73 36 58 44 1 1 1 1 1 1 8392 19859 1439 19620 30525;30526 39452;39453 39452 2 VNVDAVGGEALGR Unmodified 1255.6521 0.65206377 428 P02042 HBD Hemoglobin subunit delta yes yes 0 0 0 0 0 4 0 1 50.606 50.606 2 4.7478E-21 14486 TMT1-3 182.93 138.55 965.96 1010.4 903.35 548.6 338.04 661.93 910 1025 918 557 369 630 2 2 2 2 2 2 150190 19860 428 19621 30527 39454;39455 39454 2 VNVDEVGGEALGR Unmodified 1313.6575 0.65754307 1497 P68871 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 0 0 0 0 0 4.17 1.91 3 2 3 1 1 1 1 50.208 50.208 2;3 2.8799E-192 15482 TMT1-1 318.79 206.68 17855 16749 12656 11103 3138.5 8373.4 16789 17072 13166 10902 3763 7939 13 13 13 13 13 13 5117500 19861 1497 19622 30528;30529;30530;30531;30532;30533;30534;30535;30536;30537;30538;30539 39456;39457;39458;39459;39460;39461;39462;39463;39464;39465;39466;39467;39468;39469;39470;39471;39472 39458 17 VNVDIINFGEEEVNTEK Unmodified 1947.9426 0.94255129 1308 P55036-2;P55036;A2A3N6 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 0 0 0 0 0 4 0 1 72.002 72.002 3 1.7691E-05 22884 TMT1-3 80.238 53.509 108.32 114.59 91.471 87.496 113.95 98.018 102 116 95 87 116 95 2 2 2 2 2 2 14355 19862 1308 19623 30540 39473;39474 39473 2 VNVEAPDVNLEGLGGK Unmodified 1609.8312 0.83115034 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 64.68 64.68 3 6.4843E-09 19720 TMT1-4 112.34 74.317 84.626 123.51 99.32 71.993 99.748 105.89 80 123 102 73 102 102 1 1 1 1 1 1 27630 19863 1632 19624 30541 39475 39475 1 VNVGAGSHPNK Unmodified 1078.552 0.55195579 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.24 1 1 3 1 1 1 30.263 30.263 3;4 1.0217E-07 5991 TMT1-6 148.78 127.34 2628.4 2884.1 3040.6 2371.2 2774 3255.3 2480 2925 3080 2383 2863 3128 15 15 15 15 15 15 1109400 19864 831 19625 30542;30543;30544;30545;30546;30547;30548;30549 39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490 39485 15 VNVGAGSHPNKVK Unmodified 1305.7153 0.71533272 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8.5 0.5 1 1 32.497 32.497 4 3.9217E-08 6632 TMT1-7 117.07 89.21 755.63 766.18 573.83 477.38 171.36 1041.9 711 777 596 471 219 982 2 2 2 2 2 2 42910 19865 831 19626 30550;30551 39491;39492 39491 2 VNVPGSQAQLK Unmodified 1139.6299 0.62987176 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 7 0 1 46.413 46.413 2 1.8633E-05 12101 TMT1-6 120.65 97.224 30.662 59.204 26.345 29.764 19.284 68.74 29 58 29 29 22 65 1 1 1 1 1 1 5855.2 19866 1572 19627 30552 39493 39493 1 VNVPVIGGHAGK Unmodified 1146.6509 0.65094155 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 45.061 45.061 3 5.1004E-08 11572 TMT1-7 125.97 93.447 1687.3 2747.4 2093.4 1943 2626.4 2672.1 1597 2722 2175 1937 2684 2577 3 3 3 3 3 3 251980 19867 1075 19628 30553 39494;39495;39496 39494 3 VNYDTTESK Unmodified 1055.4771 0.47711909 572 P08621-2;P08621;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 0 4 0 1 38.212 38.212 3 0.0063443 9613 TMT1-3 72.922 45.619 161.05 205.5 169.03 161.13 195.36 187.37 152 206 175 160 200 181 1 1 1 1 1 1 10687 19868 572 19629 30554 39497 39497 1 VNYVVQEAIVVIK Unmodified 1472.8603 0.86026563 1637 Q10567-3;Q10567-4;Q10567-2;Q10567 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 0 7 0 2 77.539 77.539 2;3 0.010548 24323 TMT1-6 69.641 46.685 124.48 122.29 74.982 81.122 98.303 135.77 117 124 80 80 102 130 2 2 2 2 2 2 12976 19869 1637 19630 30555;30556 39498;39499 39498 2 VPADQSPAGSGAYEDVAGGAQTGGLGFNLR Unmodified 2861.358 0.35801359 2500 Q99952-2;Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 yes no 0 0 0 0 0 5 0 1 65.602 65.602 3 1.2488E-08 20125 TMT1-4 68.291 61.179 7.1011 29.645 43.768 21.176 13.926 23.055 7 29 43 22 15 22 1 1 1 1 1 1 11184 19870 2500 19631 30557 39500 39500 1 VPADTEVVCAPPTAYIDFAR Unmodified 2191.062 0.061954915 1352 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 5 0 2 71.013 71.013 3;4 2.5712E-31 22277 TMT1-4 151.95 119.61 362.47 357.25 271.82 249.8 211.06 342.56 341 363 283 247 224 327 4 4 4 4 4 4 314050 19871 1352 19632 30558;30559 39501;39502;39503;39504 39502 4 VPAEGLEEVLTTPETVLTGHTEK Unmodified 2449.2588 0.25880005 1342 P57737-2;P57737-4;P57737;P57737-3 CORO7 Coronin-7 yes no 0 0 0 0 0 4.67 0.471 1 2 75.695 75.695 3;4 8.4798E-18 24040 TMT1-4 109.08 96.038 61.277 79.426 93.457 95.592 84.021 75.42 58 80 95 94 87 73 2 2 2 2 2 2 14043 19872 1342 19633 30560;30561;30562 39505;39506;39507 39506 3 VPAFEGDDGFCVFESNAIAYYVSNEELR Unmodified 3197.4288 0.42879528 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 5 0 2 92.295 92.295 3;4 0.00021182 30608 TMT1-4 50.499 47.619 7.3611 38.391 35.984 14.094 37.595 23.027 7 37 36 14 37 22 1 2 3 2 2 1 7738.5 19873 904 19634 30563;30564 39508;39509;39510 39509 3 VPAGNWVLIEGVDQPIVK Unmodified 1933.0673 0.067298289 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 7 0 1 76.644 76.644 3 0.00058054 24029 TMT1-6 50.831 33.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19874 1816 19635 30565 39511 39511 1 VPAINVNDSVTK Unmodified 1255.6772 0.67721588 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 0 6 0 1 53.338 53.338 2 9.3712E-09 15457 TMT1-5 148.76 118.5 84.578 132.01 100.23 40.22 100.95 113.31 80 131 102 44 102 109 1 1 1 1 1 1 17679 19875 864 19636 30566 39512 39512 1 VPANPASVSTVPSK Unmodified 1352.73 0.72997974 2092 Q7Z434;Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 0 7 0 1 48.406 48.406 3 0.004214 12899 TMT1-6 61.649 37.306 146.61 149.86 118.47 109.76 123.36 251.25 138 152 123 109 131 239 1 1 1 1 1 1 12709 19876 2092 19637 30567 39513 39513 1 VPAQSESVR Unmodified 971.50361 0.50360861 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 3 0.816 1 1 1 31.191 31.191 2 7.8193E-07 7846 TMT1-2 166.61 94.122 550.48 722.25 465.16 521.59 489.59 792.99 519 721 494 511 517 757 4 4 4 4 4 4 179470 19877 1225 19638 30568;30569;30570 39514;39515;39516;39517 39516 4 VPASMTAEELTLEILDRR Unmodified 2043.067 0.067040293 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 1 5 0 1 74.348 74.348 3 0.0079643 23518 TMT1-4 51.235 44.799 30.636 44.022 43.564 28.027 57.057 67.662 29 44 44 29 58 65 1 1 1 1 1 1 6097.4 19878 2440 19639 30571 39518 39518 1 VPATLQVLQTLPEENYQVLR Unmodified 2310.2583 0.25834654 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 7 0 2 78.038 78.038 3;4 6.8976E-18 24480 TMT1-6 124.25 108.11 91.887 130.93 135.07 133.15 105.61 97.19 87 131 138 131 110 94 3 3 3 3 3 3 66223 19879 1616 19640 30572;30573 39519;39520;39521 39519 3 VPDASQDDGPAVERPSTEL Unmodified 1981.9229 0.92287848 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5;P23219-4 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 1 2 0 1 51.908 51.908 3 4.604E-23 15638 TMT1-1 132.79 114.21 123.11 136.66 111.77 110.49 105.56 98.258 116 138 116 109 109 95 2 2 2 2 2 2 84876 19880 855 19641 30574 39522;39523 39522 2 VPDDPEHLAAR Unmodified 1218.5993 0.59929991 2973 Q9Y2S2-2;Q9Y2S2 CRYL1 Lambda-crystallin homolog yes no 0 0 0 0 0 2 0 1 40.07 40.07 3 0.00040911 10966 TMT1-1 94.584 64.399 53.814 87.628 78.45 57.952 40.729 76.656 51 87 80 58 44 73 1 1 1 1 1 1 9995.3 19881 2973 19642 30575 39524 39524 1 VPDFSEYR Unmodified 1011.4662 0.46616048 1147 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 0 0 5 0 1 53 53 2 0.0086162 15228 TMT1-4 101.6 64.507 115.47 144.35 128.39 92.261 150.4 126.83 109 145 131 94 152 123 1 1 1 1 1 1 38528 19882 1147 19643 30576 39525 39525 1 VPDGMVGFIIGR Unmodified 1259.6696 0.66962808 2361 Q96AE4;Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 0 8 0 1 73.818 73.818 2 0.0012336 22986 TMT1-7 68.49 39.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19883 2361 19644 30577 39526 39526 1 VPDGMVGLIIGR Unmodified 1225.6853 0.68527815 2334 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 0 8 0 1 73.107 73.107 2 0.010262 22702 TMT1-7 73.887 48.992 38.137 58.591 32.889 52.869 48.585 67.904 36 58 36 51 51 65 1 1 1 1 1 1 6798.4 19884 2334 19645 30578 39527 39527 1 VPDHHPC Unmodified 860.35992 0.35992126 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 3 0 1 23.45 23.45 3 0.016458 4787 TMT1-2 72.021 64.375 99.759 91.488 107.76 93.881 129.66 89.042 94 94 109 94 131 87 1 1 1 1 1 1 19825 19885 1504 19646 30579 39528 39528 1 VPDTDEISFLK Unmodified 1262.6394 0.63943339 822 P20936-2;P20936-4;P20936;P20936-3 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 5 0 1 67.213 67.213 2 0.00026474 20772 TMT1-4 105.17 81.737 54.065 73.215 48.557 43.996 63.908 60.004 51 73 51 44 65 58 1 1 1 1 1 1 8566.6 19886 822 19647 30580 39529 39529 1 VPDVDIK Unmodified 784.43307 0.43306943 1632 Q09666;P48552 AHNAK;NRIP1 Neuroblast differentiation-associated protein AHNAK;Nuclear receptor-interacting protein 1 yes no 0 0 0 0 0 5 0 1 51.938 51.938 2 0.014822 14764 TMT1-4 101.64 38.929 651.71 1375.8 931.46 723.91 1214.2 957.8 619 1349 970 734 1224 931 1 1 1 1 1 1 99105 19887 1632 19648 30581 39530 39530 1 VPDVDIKGPK Unmodified 1066.6023 0.60226003 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 1 7 0 1 49.304 49.304 3 0.0083254 13261 TMT1-6 73.841 35.82 254.53 470.71 284.52 261.24 143.53 405.25 241 463 301 257 162 384 1 1 1 1 1 1 16207 19888 1632 19649 30582 39531 39531 1 VPDVLVADPPIAR Unmodified 1360.7715 0.77145062 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 5 0 1 64.168 64.168 2 0.00056296 19497 TMT1-4 91.549 54 23.129 44.546 42.489 52.287 49.125 52.964 22 44 44 51 51 51 1 1 1 1 1 1 13081 19889 1792 19650 30583 39532 39532 1 VPECLYTLPSLR Unmodified 1446.7541 0.754086 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 7 0 1 68.025 68.025 2 5.2413E-07 20626 TMT1-6 121.61 68.484 46.504 64.955 63.932 50.885 55.713 76.228 44 65 65 51 58 73 1 1 1 1 1 1 13344 19890 1666 19651 30584 39533 39533 1 VPENTMHAMQQK Unmodified 1412.6541 0.65405438 672 P12814;P12814-3;P12814-2;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 0 7 1 1 1 40.157 40.157 3 1.2001E-05 9707 TMT1-7 108.68 78.749 537.19 676.65 573.15 443.54 577.96 699.86 507 679 588 447 595 672 2 2 2 2 2 2 90087 19891 672 19652 30585;30586 39534;39535 39535 2 VPEVPTAPATDAAPK Unmodified 1462.7668 0.76675917 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3 SEPT9 Septin-9 yes no 0 0 0 0 0 5 0 1 52.091 52.091 3 0.023815 14791 TMT1-4 45.873 23.642 122.81 190.86 116.87 93.137 140.35 204.93 116 189 123 94 145 196 1 1 1 1 1 1 17686 19892 2864 19653 30587 39536 39536 1 VPFDAATLHTSTAMAAQHGMDDDGTGQK Unmodified 2872.2756 0.27560587 506 P06396-2;P06396-4;P06396-3;P06396 GSN Gelsolin yes no 0 0 0 0 0 5.5 0.5 1 1 53.878 53.878 4 2.388E-44 15581 TMT1-4 142.21 130.08 146.03 227.01 151.88 154.54 193.2 350.53 138 225 160 153 203 334 2 2 2 2 2 2 51804 + 19893 506 19654 30588;30589 39537;39538 39537 2 VPFESEDNQGIVYAWVGR Unmodified 2064.9905 0.99050453 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 0 6 0 1 74.666 74.666 2 0.0012934 23883 TMT1-5 66.393 44.835 15.6 36.377 52.342 12.996 14.851 7.0382 15 36 51 15 15 7 1 1 1 1 1 1 5081.8 19894 1666 19655 30590 39539 39539 1 VPFLEFK Unmodified 878.49019 0.49019038 1214 P50225;P50226 SULT1A1;SULT1A2 Sulfotransferase 1A1;Sulfotransferase 1A2 yes no 0 0 0 0 0 9 0 1 70.871 70.871 2 0.04732 20058 TMT1-8 81.784 33.935 145.16 266.69 264.49 123.74 195.46 325.95 138 264 265 131 203 311 1 1 1 1 1 1 49191 19895 1214 19656 30591 39540 39540 1 VPFLEVNDPGEPSGLETLK Unmodified 2040.0415 0.041537049 617 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2 SULT1A4;SULT1A3 Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 0 0 0 0 0 6 0 1 76.683 76.683 4 0.0099776 24669 TMT1-5 41.257 23.34 92.706 61.973 55.96 58.599 77.623 97.989 87 65 58 58 80 94 1 1 1 1 1 1 6596.1 19896 617 19657 30592 39541 39541 1 VPFLEVNDPGEPSGLETLKDTPPPR Unmodified 2703.3756 0.37556114 617 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2 SULT1A4;SULT1A3 Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 0 0 0 0 1 6 0 1 70.417 70.417 5 1.8359E-10 22176 TMT1-5 80.293 69.61 30.198 57.915 105.31 31.997 57.131 60.198 29 58 102 36 58 58 1 1 1 1 1 1 6679 19897 617 19658 30593 39542 39542 1 VPFLVLECPNLK Unmodified 1427.7847 0.78465784 2730 Q9NRP0;Q9NRP0-2 OSTC Oligosaccharyltransferase complex subunit OSTC yes no 0 0 0 0 0 9 0 2 76.68 76.68 2;3 6.773E-06 22275 TMT1-8 104.79 79.409 154.07 177.26 104.52 117.79 147.1 188.75 145 178 112 116 152 181 2 2 2 2 2 2 30355 19898 2730 19659 30594;30595 39543;39544 39543 2 VPHNAAVQVYDYR Unmodified 1530.7579 0.75792582 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 5 0 1 42.25 42.25 3 5.5877E-14 10940 TMT1-4 128.54 122.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19899 1796 19660 30596 39545 39545 1 VPIIVPIMMLAIK Unmodified 1436.8863 0.88628614 51 O00203-3;O00203;Q13367;Q13367-4;Q13367-3 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 0 0 0 0 0 9 0 1 98.805 98.805 3 0.00028645 30582 TMT1-8 78.908 49.821 23.368 21.469 21.737 14.832 14.217 23.046 22 22 22 15 15 22 1 1 1 1 1 1 1476.1 19900 51 19661 30597 39546 39546 1 VPILWHFLQK Unmodified 1279.7441 0.74411366 1999 Q63HN8;Q63HN8-4;Q63HN8-6 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 9 0 1 73.621 73.621 3 0.011897 21089 TMT1-8 56.432 28.549 53.621 110.84 91.237 79.699 122.44 74.324 51 109 94 80 123 73 1 1 1 1 1 1 6515.1 19901 1999 19662 30598 39547 39547 1 VPIPCYLIALVVGALESR Unmodified 1969.1071 0.10705461 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 9 0 1 115.86 115.86 3 0.00073312 35489 TMT1-8 57.173 35.94 0 11.636 4.0767 0 4.0415 4.1487 0 11 4 0 4 4 0 2 1 0 1 1 1438 19902 608 19663 30599 39548;39549 39548 2 VPIPWVSGTSASTPVFGGILSLINEHR Unmodified 2833.5127 0.51266374 105 Q5IS74;O14773-2;O14773 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 0 9 0 2 91.485 91.485 3;4 8.493E-34 27921 TMT1-8 118.24 102.99 53.076 65.968 40.493 40.573 39.01 58.583 50 66 43 40 41 56 3 3 3 3 3 3 68215 19903 105 19664 30600;30601 39550;39551;39552 39550 3 VPLAIVNK Unmodified 852.54329 0.54328858 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 9 0 1 57.99 57.99 2 0.03941 14890 TMT1-8 68.422 35.951 91.996 115.04 130.23 93.009 104.79 144.12 87 116 131 94 109 138 1 1 1 1 1 1 9943.4 19904 1763 19665 30602 39553 39553 1 VPLALFALNR Unmodified 1112.6706 0.67061436 674 P12955;P12955-3;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 0 9 0 1 74.593 74.593 2 0.00015676 21471 TMT1-8 130.04 82.191 68.956 103.12 45.289 75.384 90.703 121.07 65 102 51 73 94 116 1 1 1 1 1 1 18509 19905 674 19666 30603 39554 39554 1 VPLDEALQR Unmodified 1039.5662 0.56620887 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 4 0 1 51.333 51.333 2 0.0020867 14764 TMT1-3 106.6 72.861 84.702 108.61 99.189 94.989 97.922 128.32 80 109 102 94 102 123 1 1 1 1 1 1 32900 19906 1833 19667 30604 39555 39555 1 VPLEVQEADEAK Unmodified 1326.6667 0.66671078 903 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 0 3 0 1 53.074 53.074 3 0.0018562 16431 TMT1-2 74.46 66.736 46.612 50.146 58.31 26.995 65.203 45.043 44 51 58 29 65 44 1 1 1 1 1 1 7117.3 19907 903 19668 30605 39556 39556 1 VPLGSVIK Unmodified 811.51674 0.51673948 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 9 0 1 55.765 55.765 2 0.0074069 14039 TMT1-8 110.81 54.686 290.07 347.78 366.26 190.95 251.57 277.44 274 351 367 199 258 267 1 1 1 1 1 1 31856 19908 908 19669 30606 39557 39557 1 VPLHKPTDWQK Unmodified 1347.7299 0.72992016 2357 Q96A26 FAM162A Protein FAM162A yes yes 0 0 0 0 1 9 0 1 45.211 45.211 4 0.0012699 9905 TMT1-8 83.397 54.632 168.88 250.3 258.25 210.25 206.57 252.08 160 250 262 210 215 242 1 1 1 1 1 1 12347 19909 2357 19670 30607 39558 39558 1 VPLKHELEMSK Unmodified 1309.7064 0.70640752 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 7 0 1 46.725 46.725 4 0.0040211 12239 TMT1-6 73.632 50.753 169.57 212.28 174.42 200.16 195.12 324.89 160 213 182 196 206 310 1 1 1 1 1 1 12616 19910 570 19671 30608 39559 39559 1 VPLLLEEQGVVDYFLR Unmodified 1889.0299 0.02985015 763 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 0 7 0 1 93.658 93.658 3 7.8926E-07 30430 TMT1-6 98.694 82.074 30.813 36.96 19.754 37.643 28.068 46.103 29 37 22 36 30 44 2 2 2 2 2 2 6680.3 19911 763 19672 30609 39560;39561 39561 2 VPLQNPPIK Unmodified 1004.6019 0.6018661 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 8 0 1 51.436 51.436 2 0.016636 14157 TMT1-7 79.809 46.013 46.161 111.49 82.192 112.69 82.465 97.851 44 109 87 109 87 94 1 1 1 1 1 1 7235.2 19912 2223 19673 30610 39562 39562 1 VPLSEFDFSWSK Unmodified 1440.6925 0.6925316 2764 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 0 8 0 1 77.862 77.862 3 0.0045754 24536 TMT1-7 65.563 51.9 38.115 50.974 43.089 28.48 34.514 53.381 36 51 44 29 36 51 1 1 1 1 1 1 8884.5 19913 2764 19674 30611 39563 39563 1 VPMILVGNK Unmodified 969.56812 0.56812313 1385 P61225 RAP2B Ras-related protein Rap-2b yes yes 0 0 0 0 0 9 0 1 63.244 63.244 3 0.0020589 16959 TMT1-8 87.616 50.923 38.084 58.443 41.932 44.396 63.633 67.474 36 58 44 44 65 65 1 1 1 1 1 1 8778.1 19914 1385 19675 30612 39564 39564 1 VPNDKYYGAQTVR Unmodified 1509.7576 0.75759147 553 P07954-2;P07954 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 1 6 0 1 40.109 40.109 3 0.045815 10233 TMT1-5 48.532 36.172 108.32 107.03 98.45 111.03 118.88 136.25 102 109 102 109 123 131 1 1 1 1 1 1 8136.2 19915 553 19676 30613 39565 39565 1 VPPGYHPLDVEKEWGK Unmodified 1849.9363 0.93628412 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 1 7 0 1 54.119 54.119 4 0.0031523 15083 TMT1-6 59.709 49.921 138.64 181.45 170.2 145.59 146.32 204.76 131 182 174 145 153 196 2 2 2 2 2 2 10593 19916 1833 19677 30614 39566;39567 39566 2 VPPPPPIAR Unmodified 942.56509 0.56508666 547 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 0 7 0 1 44.72 44.72 2 0.0021544 11446 TMT1-6 105.12 60.506 252.13 427 363.05 282.13 295.19 469.14 239 423 372 283 310 448 2 2 2 2 2 2 71984 19917 547 19678 30615 39568;39569 39568 2 VPPVQVSPLIK Unmodified 1175.7278 0.72779489 1337 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 0 9 0 2 62.342 62.342 2;3 0.0019184 16784 TMT1-8 71.03 48.29 214.98 243.79 270.46 255.42 323.34 416.11 203 247 275 254 334 399 3 3 3 3 3 3 24843 19918 1337 19679 30616;30617 39570;39571;39572 39572 3 VPQIEVETHK Unmodified 1178.6295 0.62953741 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 45.138 45.138 3 0.00083502 12083 TMT1-4 65.232 37.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19919 1763 19680 30618 39573 39573 1 VPQVSTPTLVEVSR Unmodified 1510.8355 0.83550744 28;29 CON__P02768-1;P02768;P02768-2;P02768-3;CON__P02769 ALB Serum albumin no no 0 0 0 0 0 6 0 2 57.671 57.671 2;3 0.00015252 17148 TMT1-5 91.307 69.109 91.975 170.03 87.09 88.743 119.65 143.69 87 167 94 88 123 138 2 2 2 2 2 2 43061 + 19920 28;29 19681 30619;30620 39574;39575 39574 2 VPSENVLGEVGSGFK Unmodified 1517.7726 0.77257283 1194 P49748-3;P49748;P49748-2 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 6 0 1 65.254 65.254 2 4.2922E-07 20139 TMT1-5 109.83 80.091 46.371 73.218 79.366 57.622 55.403 76.237 44 73 80 58 58 73 1 1 1 1 1 1 18005 19921 1194 19682 30621 39576 39576 1 VPSLVGSFIR Unmodified 1073.6233 0.62332982 1506 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 0 9 0 1 67.857 67.857 2 3.6727E-25 18786 TMT1-8 206.38 155.04 775.48 1047.9 1145.4 890.51 1092.8 1253.3 734 1052 1157 896 1125 1205 3 3 3 3 3 3 309250 19922 1506 19683 30622 39577;39578;39579 39577 3 VPSTEAEALASSLMGLFEK Unmodified 1978.9921 0.99214402 1217 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 0 0 7.5 0.5 2 2 98.311 98.311 3;4 7.471E-18 32126 TMT1-7 126.07 112.06 123.81 173.84 143.12 93.69 115 136.56 117 173 146 94 117 131 7 6 6 6 6 6 18467 19923 1217 19684 30623;30624;30625;30626 39580;39581;39582;39583;39584;39585;39586 39583 7 VPSTETEALASNLMGMFEK Unmodified 2053.97 0.97002836 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 7 0 1 87.711 87.711 3 9.7347E-05 28190 TMT1-6 65.924 44.083 30.538 35.116 67.548 11.69 36.093 29.884 29 36 65 15 36 29 1 1 1 1 1 1 5317.7 19924 972 19685 30627 39587 39587 1 VPTADLEDVLPLAEDITNILSK Unmodified 2365.2628 0.26282279 447 P02774-3;P02774;P02774-2 GC Vitamin D-binding protein yes no 0 0 0 0 0 6.5 0.5 1 1 106.42 106.42 3 1.1444E-17 34181 TMT1-5 111.45 97.136 13.711 25.367 18.446 11.691 17.319 28.288 13 25 19 12 18 27 4 4 4 4 4 4 4287.9 19925 447 19686 30628;30629 39588;39589;39590;39591 39588 4 VPTANVSVVDLTCR Unmodified 1529.7872 0.78717704 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 6.17 2.54 1 2 1 1 1 59.195 59.195 2;3 7.7384E-132 17667 TMT1-5 286.34 262.59 1208.5 1576.5 1318.7 1389.4 1275.6 2056.2 1141 1579 1369 1365 1348 1963 10 10 10 10 10 10 1597900 19926 472 19687 30630;30631;30632;30633;30634;30635 39592;39593;39594;39595;39596;39597;39598;39599;39600;39601 39595 10 VPTHIVDYSEAEQTDEELREEIHK Unmodified 2866.3621 0.36209592 2145 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 0 1 3 0 1 57.662 57.662 5 0.0017152 18232 TMT1-2 45.395 33.43 38.245 43.781 27.287 28.545 81.13 36.061 36 44 29 29 80 36 1 1 1 1 1 1 4956.6 19927 2145 19688 30636 39602 39602 1 VPTHPEGK Unmodified 863.45012 0.45011648 2041 Q6PL24 TMED8 Protein TMED8 yes yes 0 0 0 0 0 5 0 1 30.722 30.722 3 0.025637 6366 TMT1-4 58.676 43.901 99.245 152.66 142.41 108.12 134.2 150.74 94 152 145 109 138 145 1 1 1 1 1 1 11922 19928 2041 19689 30637 39603 39603 1 VPTISINK Unmodified 870.51747 0.51746776 1555;1556 Q01518;P40123-3;P40123-2;P40123;Q01518-2 CAP1;CAP2 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 2 no no 0 0 0 0 0 8.5 0.5 1 1 53.919 53.919 2 1.1843E-08 15237 TMT1-7 178.87 86.401 3193.5 4875.9 3948.3 3246.7 4312.9 4208.1 3021 4847 4068 3260 4404 4063 5 5 5 5 5 5 672400 19929 1555;1556 19690 30638;30639 39604;39605;39606;39607;39608 39605 5 VPTISINKTDGCHAYLSK Unmodified 2003.0146 0.014610792 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 9 0 1 51.824 51.824 4 5.3147E-05 12545 TMT1-8 69.979 52.017 53.786 95.103 76.944 81.69 61.919 67.523 51 94 80 80 65 65 1 1 1 1 1 1 5698.9 19930 1555;1556 19691 30640 39609 39609 1 VPTTEKPTVTVNFR Unmodified 1587.8621 0.86205654 1584 Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637-3;Q04637;Q04637-8;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 1 8 0 1 50.171 50.171 3 0.00043165 13660 TMT1-7 78.69 47.504 115.71 113.72 113.93 93.849 111.83 151.38 109 116 116 94 116 145 1 1 1 1 1 1 14266 19931 1584 19692 30641 39610 39610 1 VPTTGIIEYPFDLQSVIFR Unmodified 2194.1674 0.16740626 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 8.33 0.471 2 1 90.687 90.687 3;4 2.7785E-18 29348 TMT1-7 128.26 107.32 69.673 109.61 99.554 87.136 107.48 80.685 66 109 102 87 109 79 3 3 3 3 3 4 68047 19932 1211 19693 30642;30643;30644 39611;39612;39613;39614 39612 4 VPTVEPLDSLTLFLFR Unmodified 1846.024 0.024036491 683 P13598 ICAM2 Intercellular adhesion molecule 2 yes yes 0 0 0 0 0 9 0 2 98.073 98.073 2;3 7.6531E-32 30296 TMT1-8 178.67 142.67 77.016 116.19 122.28 101.65 77.187 115.06 73 116 124 101 80 110 4 4 4 4 3 4 49624 19933 683 19694 30645;30646 39615;39616;39617;39618 39616 4 VPTWGPLR Unmodified 924.51814 0.51813647 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 0 9 0 1 55.961 55.961 2 0.012342 14089 TMT1-8 85.813 38.819 99.91 108.1 68.405 80.637 144.92 88.607 94 109 73 80 145 87 1 1 1 1 1 1 19902 19934 1655 19695 30647 39619 39619 1 VPVAVQGEDTVQSLTQGDGVAK Unmodified 2197.1226 0.12264092 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 5 0 1 64.655 64.655 3 4.4595E-09 19733 TMT1-4 84.166 70.125 46.765 50.572 32.247 77.102 40.655 53.206 44 51 36 73 44 51 1 1 1 1 1 1 13652 19935 409 19696 30648 39620 39620 1 VPVDPATYGQFYGGDSYIILYNYR Unmodified 2770.3279 0.32788266 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 7 0 3 82.742 82.742 3;4 6.3371E-24 26250 TMT1-6 127.58 120.47 176.22 202.72 146.97 123.93 209.29 166.72 166 204 153 125 211 162 7 7 7 7 7 7 159830 + 19936 506 19697 30649;30650;30651 39621;39622;39623;39624;39625;39626;39627 39622 7 VPVDVAYR Unmodified 917.49707 0.49706667 1833;1346 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;P58107 PLEC;EPPK1 Plectin;Epiplakin no no 0 0 0 0 0 5 0 1 47.087 47.087 2 0.0029977 12890 TMT1-4 133.79 64.408 138.76 226.04 112.22 148.18 192.51 226.89 131 223 123 145 198 218 1 1 1 1 1 1 40680 19937 1833;1346 19698 30652 39628 39628 1 VPVDWNR Unmodified 884.45045 0.45045083 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 6 0 1 47.928 47.928 2 0.013441 13287 TMT1-5 102.72 66.839 222.43 306.78 227.43 212.69 290.87 322.16 210 306 237 212 298 310 1 1 1 1 1 1 43325 19938 690 19699 30653 39629 39629 1 VPVGDQPPDIEYQIK Unmodified 1696.8672 0.8672015 1226 P50570-5;P50570;P50570-2;P50570-4;P50570-3 DNM2 Dynamin-2 yes no 0 0 0 0 0 5 0 2 61.684 61.684 3;4 1.5149E-08 18556 TMT1-4 115.68 104.74 169.65 202.79 169.13 137.2 189.09 280.29 160 204 174 138 196 268 2 2 2 2 2 2 34879 19939 1226 19700 30654;30655 39630;39631 39630 2 VPVGDQPPDIEYQIR Unmodified 1724.8733 0.87334951 2942 Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM3 Dynamin-3 yes no 0 0 0 0 0 4 0 1 58.815 58.815 3 0.0010978 17754 TMT1-3 67.136 65.402 37.873 74.046 64.156 34.58 50.196 45.472 36 73 65 36 51 44 1 1 1 1 1 1 9345.9 19940 2942 19701 30656 39632 39632 1 VPVHDVTDASK Unmodified 1166.5932 0.5931519 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.62 1.65 1 2 3 1 1 39.059 39.059 2;3;4 4.0654E-07 9731 TMT1-5 134.3 94.682 5885.9 7873.1 6776.4 5055.9 7657.3 7931.1 5560 7879 6935 5127 7803 7645 9 9 9 9 9 9 1893600 19941 831 19702 30657;30658;30659;30660;30661;30662;30663;30664 39633;39634;39635;39636;39637;39638;39639;39640;39641;39642 39641 10 VPVPDER Unmodified 810.42357 0.42356738 2745 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 3 0 1 38.352 38.352 2 0.040268 10638 TMT1-2 86.086 41.113 99.37 137.89 133.95 148.02 132.11 158.26 94 138 138 145 138 152 2 2 2 2 2 2 15063 19942 2745 19703 30665 39643;39644 39643 2 VPVSDLLLSYESPK Unmodified 1545.829 0.82902508 1876 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 0 7 0 1 73.48 73.48 3 0.00041684 22769 TMT1-6 77.078 64.452 30.687 44.164 34.845 29.232 20.628 30.325 29 44 36 29 22 29 1 1 1 1 1 1 3971.8 19943 1876 19704 30666 39645 39645 1 VPVTYLELLS Unmodified 1132.638 0.63797683 2723 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 0 7 0 1 89.547 89.547 2 0.013681 28963 TMT1-6 79.116 62.152 15.895 22.088 14.825 0 15.156 15.558 15 22 15 0 15 15 1 1 1 0 1 1 7711.2 19944 2723 19705 30667 39646 39646 1 VPVVHVDEK Unmodified 1020.5604 0.56039521 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 5 0 1 43.008 43.008 3 0.01419 11168 TMT1-4 62.463 21.469 160.22 335.93 199.03 210.88 244.47 213.69 152 329 212 208 250 207 1 1 1 1 1 1 206750 19945 2259 19706 30668 39647 39647 1 VQAAEHTLR Unmodified 1023.5461 0.54614213 2605 Q9GZZ9-2;Q9GZZ9 UBA5 Ubiquitin-like modifier-activating enzyme 5 yes no 0 0 0 0 0 4 0 1 29.943 29.943 3 0.0027757 6309 TMT1-3 83 47.056 68.749 87.437 93.28 87.93 85.164 82.85 65 88 95 87 88 80 2 2 2 2 2 2 16908 19946 2605 19707 30669 39648;39649 39648 2 VQAAVGTSAAPVPSDNH Unmodified 1619.7903 0.79034816 432 P02649 APOE Apolipoprotein E yes yes 0 0 0 0 0 4 0 1 43.526 43.526 3 0.0003007 11726 TMT1-3 71.402 44.066 84.967 101.79 60.439 75.318 46.197 107.41 80 102 65 73 51 102 1 1 1 1 1 1 11528 19947 432 19708 30670 39650 39650 1 VQAELDETK Unmodified 1031.5135 0.5135046 149 O15498-2;O15498 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 0 3 0 1 44.754 44.754 2 0.0009995 13169 TMT1-2 125.75 82.72 53.837 103.88 60.888 65.953 77.798 83.06 51 102 65 65 80 80 1 1 1 1 1 1 10148 19948 149 19709 30671 39651 39651 1 VQAINVSSR Unmodified 972.53524 0.53524309 2376 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 0 7 0 1 38.864 38.864 2 0.00094356 9123 TMT1-6 126.55 97.13 84.905 92.981 78.349 49.478 84.822 113.77 80 94 80 51 87 109 1 1 1 1 1 1 10928 19949 2376 19710 30672 39652 39652 1 VQALTTDISLIFAALK Unmodified 1702.9869 0.9869227 2040 Q6PKG0-3;Q6PKG0 LARP1 La-related protein 1 yes no 0 0 0 0 0 9 0 1 103.55 103.55 3 5.2565E-06 32352 TMT1-8 79.022 57.721 39.396 36.37 20.429 22.312 27.469 53.582 37 37 22 22 29 51 2 2 2 2 2 2 2581.5 19950 2040 19711 30673 39653;39654 39654 2 VQANLGAPDINIEGLDAK Unmodified 1836.9581 0.95814177 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 68.083 68.083 3 3.6811E-19 21079 TMT1-4 131.25 107.21 68.479 124.46 107.33 62.784 99.109 136.82 65 123 109 65 102 131 1 1 1 1 1 1 21626 19951 1632 19712 30674 39655 39655 1 VQAPHLSK Unmodified 878.4974 0.49740102 2172 Q8N392-2;Q8N392 ARHGAP18 Rho GTPase-activating protein 18 yes no 0 0 0 0 0 8 1 1 1 38.156 38.156 3 0.0061678 7476 TMT1-8 67.897 28.749 359.31 311.22 300.94 314.22 354.79 487.7 338 320 310 310 369 467 2 2 2 2 2 2 26616 19952 2172 19713 30675;30676 39656;39657 39657 2 VQAQHDYTATDTDELQLK Unmodified 2074.9807 0.98072771 76 O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-2;O00499-5;O00499 BIN1 Myc box-dependent-interacting protein 1 yes no 0 0 0 0 0 4 0 1 49.149 49.149 3 7.045E-11 13943 TMT1-3 90.718 75.082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19953 76 19714 30677 39658 39658 1 VQAVVAVAR Unmodified 911.55525 0.55525025 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 0 7 0 1 45.009 45.009 2 0.0019261 11576 TMT1-6 110.12 32.375 98.93 191.71 162.18 146.22 138.17 197.53 94 189 167 145 145 189 1 1 1 1 1 1 17370 19954 1546 19715 30678 39659 39659 1 VQDAVQQHQQK Unmodified 1307.6582 0.65821178 2761 Q9NVI7-2;Q9NVI7;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 0 0 0 5 0 1 30.852 30.852 3 0.0030483 6430 TMT1-4 74.76 47.791 38.28 27.688 35.103 44.774 65.192 21.592 36 29 36 44 65 22 1 1 1 1 1 1 5975.7 19955 2761 19716 30679 39660 39660 1 VQDDEVGDGTTSVTVLAAELLR Unmodified 2287.1543 0.15433498 1504 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 0 4.25 0.433 3 1 85.544 85.544 3;4 1.052E-28 28033 TMT1-3 129.56 113.54 77.262 157.89 45.528 99.93 121.48 105.91 73 154 51 96 124 102 6 6 3 6 6 5 65036 19956 1504 19717 30680;30681;30682;30683 39661;39662;39663;39664;39665;39666 39662 6 VQDLEQK Unmodified 858.4447 0.44469675 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 4 0 1 42.976 42.976 2 0.0083373 11490 TMT1-3 117.04 39.978 214.76 283.11 274.1 169.48 232.11 233.23 203 284 277 174 237 225 1 1 1 1 1 1 21221 19957 1073 19718 30684 39667 39667 1 VQEGYTCDCFDGYHLDTAK Unmodified 2277.9307 0.93068275 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 4 0 1 55.185 55.185 4 0.00018539 16349 TMT1-3 63.454 49.293 739.28 830.63 921.51 772.97 961.65 1056.7 698 842 933 774 988 1017 2 2 2 2 2 2 65944 19958 1797 19719 30685 39668;39669 39669 2 VQELGHGCAALVTK Unmodified 1481.766 0.76604767 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.75 1.98 1 1 3 2 1 46.977 46.977 2;3;4 4.5428E-19 12229 TMT1-6 162.79 125.18 1913.2 2967.7 2519.2 2095.8 2393.4 2918.6 1811 2950 2588 2096 2476 2802 11 11 11 11 11 11 1323500 19959 3010 19720 30686;30687;30688;30689;30690;30691;30692;30693 39670;39671;39672;39673;39674;39675;39676;39677;39678;39679;39680 39679 11 VQELQNLLK Unmodified 1083.6288 0.62880913 2109 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 0 8 0 1 65.986 65.986 2 0.0019252 19926 TMT1-7 110.14 56.969 92.476 101.27 61.186 58.411 71.072 75.79 87 102 65 58 73 73 1 1 1 1 1 1 7681.4 19960 2109 19721 30694 39681 39681 1 VQENSPGHR Unmodified 1022.4894 0.48935553 2661 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 yes yes 0 0 0 0 0 3 0 1 18.624 18.624 3 0.0019179 3244 TMT1-2 89.08 39.364 5.2885 6.9752 6.954 3.925 1.7303 5.2806 5 7 7 4 2 5 1 1 1 1 1 1 768.34 19961 2661 19722 30695 39682 39682 1 VQEQELK Unmodified 872.46035 0.46034682 1913 Q16891-2;Q16891-4;Q16891;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 0 4 0 1 38.777 38.777 2 0.0017552 9830 TMT1-3 145.63 40.066 191.91 262.01 164.84 199.88 240.42 163.7 181 261 176 196 244 160 1 1 1 1 1 1 21147 19962 1913 19723 30696 39683 39683 1 VQESADELQK Unmodified 1145.5564 0.55643205 1520 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 0 2.5 0.5 1 1 43.192 43.192 2;3 0.00046287 12287 TMT1-1 116.55 43.903 292.97 354.05 234.35 277.28 263.62 298.42 276 355 249 271 274 287 2 2 2 2 2 2 48454 19963 1520 19724 30697;30698 39684;39685 39684 2 VQESTKGPDEAK Unmodified 1287.6307 0.63065962 170 O43390;O43390-3;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 1 4 0 1 33.614 33.614 3 0.021308 7754 TMT1-3 56.938 37.695 130.42 190.63 100.26 125.31 167.45 103.95 123 189 109 123 169 102 1 1 1 1 1 1 23499 19964 170 19725 30699 39686 39686 1 VQETGDIVISNAYVDLAPTSGTSAK Unmodified 2535.2704 0.27042737 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 5 0 1 69.921 69.921 4 2.3748E-05 21804 TMT1-4 58.998 36.346 183.9 203.94 297.48 216.26 228.05 288.77 174 208 296 218 237 277 1 1 1 1 1 1 23319 19965 1250 19726 30700 39687 39687 1 VQEVLLK Unmodified 827.51165 0.5116541 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 54.583 54.583 2 0.0092918 15943 TMT1-5 112.94 21.876 388.8 650.12 467.42 489.26 399.97 826.46 368 643 490 480 431 786 2 2 2 2 2 2 37750 19966 3017 19727 30701;30702 39688;39689 39688 2 VQEYFEWAAQVVK Unmodified 1595.7984 0.79839365 2179 Q8N4P3 HDDC3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 yes yes 0 0 0 0 0 8 0 1 82.433 82.433 3 0.0020328 26302 TMT1-7 69.716 47.518 46.661 50.282 49.968 44.045 56.833 52.744 44 51 51 44 58 51 1 1 1 1 1 1 7082 19967 2179 19728 30703 39690 39690 1 VQGSDSDEEVVVATTR Unmodified 1690.801 0.80097243 903 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 0 2 0 1 45.489 45.489 3 6.3913E-09 13137 TMT1-1 93.152 53.039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19968 903 19729 30704 39691 39691 1 VQHIQLLQK Unmodified 1105.6608 0.66077796 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 6 3.56 1 1 1 46.693 46.693 3 8.8231E-07 12116 TMT1-7 163.15 126.7 5594.4 7774.6 6078.4 4787.1 6668.3 9007.2 5284 7757 6272 4826 6881 8628 8 8 8 8 8 8 1200700 19969 437 19730 30705;30706;30707 39692;39693;39694;39695;39696;39697;39698;39699 39694 8 VQIEHISSLIK Unmodified 1265.7343 0.73433683 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 8 0 1 56.532 56.532 3 0.0038439 16148 TMT1-7 72.089 25.497 99.389 153.06 117.82 125.22 116.65 182.16 94 152 123 123 123 174 1 1 1 1 1 1 25067 19970 54 19731 30708 39700 39700 1 VQIQESVR Unmodified 957.52434 0.52434406 216 O60256-3;O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 0 4 0 1 38.118 38.118 2 0.0029622 9541 TMT1-3 133.98 81.495 91.892 138.5 127.79 116.34 150.35 95.914 87 138 131 116 152 94 1 1 1 1 1 1 23430 19971 216 19732 30709 39701 39701 1 VQIYHNPTANSFR Unmodified 1545.7688 0.76882486 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 8 0.816 1 1 1 41.585 41.585 3 2.1175E-08 10204 TMT1-7 121.56 99.503 360.81 517.75 415.48 330.72 451.22 642.71 341 516 428 333 467 615 5 5 5 5 5 5 163060 19972 1225 19733 30710;30711;30712 39702;39703;39704;39705;39706 39704 5 VQLDTIQGELNAPTQFK Unmodified 1900.9894 0.9894419 2088 Q7Z3B4;Q7Z3B4-3;Q7Z3B4-2 NUP54 Nucleoporin p54 yes no 0 0 0 0 0 6 0 1 68.043 68.043 3 0.019984 21274 TMT1-5 42.888 23.813 61.574 64.061 56.671 43.359 72.057 67.234 58 65 58 44 73 65 1 1 1 1 1 1 6534.2 19973 2088 19734 30713 39707 39707 1 VQLLQDLQDFFR Unmodified 1520.7987 0.798728 249 P0DMP2;P0DJJ0;Q7Z6B7-2;O75044;Q7Z6B7 SRGAP2B;SRGAP2C;SRGAP1;SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C;SLIT-ROBO Rho GTPase-activating protein 1;SLIT-ROBO Rho GTPase-activating protein 2 yes no 0 0 0 0 0 9 0 1 92.265 92.265 3 0.00017937 28233 TMT1-8 90.697 71.454 15.899 22.099 14.198 14.045 21.839 15.367 15 22 15 14 22 15 1 1 1 1 1 1 2376.6 19974 249 19735 30714 39708 39708 1 VQLLSQYDNEK Unmodified 1335.667 0.66704513 356 O95466-2;O95466;O95466-3 FMNL1 Formin-like protein 1 yes no 0 0 0 0 0 6 0 1 56.287 56.287 3 0.042481 16609 TMT1-5 45.115 20.323 115.86 130.33 74.206 88.683 105.54 128.11 109 131 80 87 109 123 1 1 1 1 1 1 7048.9 19975 356 19736 30715 39709 39709 1 VQLNVFDEQGEEDSYDLK Unmodified 2126.9644 0.96440894 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 4 0 1 69.681 69.681 4 0.0011162 22119 TMT1-3 55.864 32.302 15.892 14.523 21.857 22.354 20.687 37.786 15 15 22 22 22 36 1 1 1 1 1 1 20304 19976 228 19737 30716 39710 39710 1 VQLPAYLK Unmodified 930.55385 0.55385327 2183 Q8N5K1 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 0 0 0 0 0 8.5 0.5 1 1 60.023 60.023 2 0.0073468 15728 TMT1-8 112.17 56.161 345.39 386.9 412.47 333.3 497.99 434.58 326 392 418 336 505 421 2 2 2 2 2 2 30579 19977 2183 19738 30717;30718 39711;39712 39712 2 VQLPTETLQELLDLHR Unmodified 1904.0367 0.036726442 993;994 P32456;P32455 GBP2;GBP1 Interferon-induced guanylate-binding protein 2;Interferon-induced guanylate-binding protein 1 no no 0 0 0 0 0 6.5 0.5 1 1 78.119 78.119 3 5.286E-20 24573 TMT1-6 157.91 125.78 76.999 131.25 112.31 110.9 81.998 113.85 73 130 116 109 87 109 3 3 3 3 3 3 24578 19978 994;993 19739 30719;30720 39713;39714;39715 39715 3 VQLSGPQEAEK Unmodified 1184.6037 0.60371659 2933 Q9UNS2;Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 yes no 0 0 0 0 0 5 0 1 43.594 43.594 2 0.00047802 11474 TMT1-4 77.597 40.121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19979 2933 19740 30721 39716 39716 1 VQLSNDFDEYIMAIEQTIK Unmodified 2256.0984 0.098400001 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 6 0 1 96.405 96.405 3 1.5411E-05 31943 TMT1-5 76.155 55.529 7.4331 15.459 0 7.3716 14.853 14.5 7 15 0 7 15 14 1 1 0 1 1 1 1933.6 19980 409 19741 30722 39717 39717 1 VQLYDLGLQIHK Unmodified 1425.798 0.79799972 777 P18428 LBP Lipopolysaccharide-binding protein yes yes 0 0 0 0 0 8 0 1 63.299 63.299 3 0.005091 18847 TMT1-7 47.606 24.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19981 777 19742 30723 39718 39718 1 VQMEELSK Unmodified 962.47428 0.47428232 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 48.713 48.713 2 0.00099669 13498 TMT1-4 93.111 41.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19982 1833 19743 30724 39719 39719 1 VQNATLAVANITNADSATR Unmodified 1928.9916 0.99156716 906 P27105 STOM Erythrocyte band 7 integral membrane protein yes yes 0 0 0 0 0 6.8 0.748 2 2 1 57.11 57.11 2;3 6.0971E-71 16889 TMT1-5 221.59 198.21 400.51 628.53 502.37 509.6 486.12 605.47 379 624 522 502 507 581 6 6 6 6 6 6 415620 19983 906 19744 30725;30726;30727;30728;30729 39720;39721;39722;39723;39724;39725 39722 6 VQPEAQAK Unmodified 869.46068 0.46068117 1603 Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 0 4.5 0.5 1 1 32.816 32.816 2 0.001285 7442 TMT1-3 143.28 74.087 365.48 264.51 205.94 250.14 401.72 181.48 343 275 217 247 401 181 2 2 2 2 2 2 35468 19984 1603 19745 30730;30731 39726;39727 39726 2 VQPNEAVYTK Unmodified 1147.5873 0.58733824 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 5 0 1 43.337 43.337 3 0.00028032 11378 TMT1-4 102.53 91.682 243.43 467.2 348.54 360.23 430.95 492.99 231 460 364 356 444 474 1 1 1 1 1 1 50415 19985 655 19746 30732 39728 39728 1 VQPYLDDFQK Unmodified 1251.6136 0.61355299 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 5.33 0.471 2 1 59.819 59.819 2;3 2.3912E-05 17962 TMT1-5 136.96 98.655 191.49 223.06 268.41 186.21 232.1 302.52 181 226 269 189 240 290 3 3 3 3 3 3 36775 19986 431 19747 30733;30734;30735 39729;39730;39731 39731 3 VQQLEEQVQSLTK Unmodified 1528.8097 0.80968662 3051 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 0 6 0 1 67.353 67.353 2 4.3758E-13 20994 TMT1-5 125.82 88.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19987 3051 19748 30736 39732 39732 1 VQQLQGLLQNQSLQLQEQEK Unmodified 2351.2445 0.24448739 2948 Q9Y228;Q9Y228-2 TRAF3IP3 TRAF3-interacting JNK-activating modulator yes no 0 0 0 0 0 7 0 1 70.309 70.309 3 1.4756E-13 21538 TMT1-6 88.176 76.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19988 2948 19749 30737 39733 39733 1 VQQLVPK Unmodified 810.49634 0.49633839 195 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 0 8 0 1 47.82 47.82 2 0.0059716 12748 TMT1-7 132.96 67.697 723.74 1395.2 1071.2 855.77 1024.6 1245.7 687 1374 1106 859 1058 1196 2 2 2 2 2 2 96136 19989 195 19750 30738 39734;39735 39735 2 VQQQEDEITVLK Unmodified 1428.746 0.74602373 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 4 0 1 54.372 54.372 3 0.00027855 15984 TMT1-3 89.959 67.042 122.34 198.2 189.14 112.59 155.38 198.11 116 197 191 116 160 190 1 1 1 1 1 1 19409 19990 2687 19751 30739 39736 39736 1 VQQTVQDLFGR Unmodified 1289.6728 0.67279921 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 7 0 1 64.617 64.617 3 1.5306E-06 19254 TMT1-6 126.66 99.985 61.574 64.06 56.707 42.544 57.196 44.206 58 65 58 43 58 43 1 1 1 1 1 1 15258 19991 1058 19752 30740 39737 39737 1 VQRPEDASGGSSPSGTSK Unmodified 1745.818 0.81801947 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 1 4.5 0.5 1 1 30.164 30.164 3 2.7848E-08 6436 TMT1-3 102.69 85.201 46.61 73.885 38.513 99.381 114.76 58.553 44 73 44 95 116 58 2 2 2 2 2 2 8947.7 19992 2872 19753 30741;30742 39738;39739 39738 2 VQSATHFKK Unmodified 1044.5716 0.5716286 267;2923 O75351;Q9UN37 VPS4B;VPS4A Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A no no 0 0 0 0 1 9 0 1 34.416 34.416 4 0.043972 6139 TMT1-8 35.826 8.0841 201.5 123.9 113.54 78.96 91.052 106.13 189 131 116 80 94 102 1 1 1 1 1 1 22212 19993 267;2923 19754 30743 39740 39740 1 VQSCPDPAVYGVVQSGDHIGR Unmodified 2240.0644 0.064414531 2594 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 0 4 0 1 50.377 50.377 3 3.9436E-14 14435 TMT1-3 112.33 108.8 38.214 51.251 26.072 45.756 41.583 68.103 36 51 29 44 44 65 1 1 1 1 1 1 9271.5 19994 2594 19755 30744 39741 39741 1 VQSDGQIVLVDDWIK Unmodified 1713.8938 0.8937506 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 0 5 0 1 74.787 74.787 3 6.3901E-05 23723 TMT1-4 66.826 48.231 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19995 1619 19756 30745 39742 39742 1 VQSFWGSEAALLLVCPGEGLSEPR Unmodified 2601.2897 0.28972302 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 0 7.33 0.471 2 1 88.044 88.044 3;4 9.1075E-47 28296 TMT1-6 164.27 147.79 124.17 130.06 120.8 110.98 102.13 197.49 117 132 124 109 109 188 5 5 5 4 5 5 75951 19996 1969 19757 30746;30747;30748 39743;39744;39745;39746;39747 39743 5 VQSGNINAAK Unmodified 1000.5302 0.53015772 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 6 0 1 36.406 36.406 3 0.0053082 8736 TMT1-5 72.096 26.959 160.75 269.42 165.21 160.79 225.45 195.04 152 266 175 160 229 189 1 1 1 1 1 1 10464 19997 1178 19758 30749 39748 39748 1 VQSLQATFGTFESILR Unmodified 1795.9468 0.9468488 1609 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 0 9 0 1 84.337 84.337 3 3.5573E-08 25226 TMT1-8 103.04 52.819 69.128 56.113 56.085 66.357 71.513 52.325 65 58 58 65 73 51 1 1 1 1 1 1 11528 19998 1609 19759 30750 39749 39749 1 VQSNCPLSPTEYLGEDK Unmodified 1935.8884 0.88840723 79 O00534;O00534-3;O00534-2;O00534-4 VWA5A von Willebrand factor A domain-containing protein 5A yes no 0 0 0 0 0 4 0 1 60.101 60.101 3 2.8738E-05 18256 TMT1-3 60.764 59.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19999 79 19760 30751 39750 39750 1 VQTANEVK Unmodified 887.47125 0.47124585 998 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 0 5 0 1 35.017 35.017 2 0.018741 8067 TMT1-4 89.886 32.838 77.779 40.602 57.993 43.433 63.934 60.004 73 44 58 44 65 58 1 1 1 1 1 1 7828.1 20000 998 19761 30752 39751 39751 1 VQTLSNQPLLK Unmodified 1239.7187 0.71868677 2162 Q8N163-2;Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 0 8 0 1 54.947 54.947 3 0.00014315 15547 TMT1-7 101.93 39.626 145.89 276.28 132.96 148.64 102.23 144.19 138 271 145 145 109 138 1 1 1 1 1 1 15605 20001 2162 19762 30753 39752 39752 1 VQTPEVDVK Unmodified 1013.5393 0.53932542 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 4 0 1 46.673 46.673 3 0.018665 12957 TMT1-3 58.592 30.579 160.48 297.8 187.37 135.34 230 218.36 152 293 196 138 233 211 2 2 2 2 2 2 13581 20002 1632 19763 30754 39753;39754 39753 2 VQVALEELQDLK Unmodified 1383.7609 0.76094551 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 5 0 1 76.669 76.669 3 0.00018048 24424 TMT1-4 93.011 62.139 38.107 43.397 50.811 35.366 50.709 29.467 36 44 51 36 51 29 1 1 1 1 1 1 11365 20003 1763 19764 30755 39755 39755 1 VQVALGNISSK Unmodified 1114.6346 0.63462279 313 O75935;O75935-3;O75935-2 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 0 8.5 0.5 1 1 54.899 54.899 3 0.0030851 13688 TMT1-8 67.999 43.208 238.46 272.06 266.99 146.89 235.24 233.14 225 275 269 153 239 225 2 2 2 2 2 2 14443 20004 313 19765 30756;30757 39756;39757 39757 2 VQVEYKGETK Unmodified 1179.6136 0.61355299 641 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 1 5.5 0.5 1 1 40.236 40.236 3 0.00029232 10201 TMT1-5 105.17 79.734 1719.7 2088.8 1708.4 1292.5 1239.4 2659.5 1622 2099 1756 1297 1329 2528 3 3 3 3 3 3 295840 20005 641 19766 30758;30759 39758;39759;39760 39759 3 VQVILPK Unmodified 795.52182 0.52182486 525 P07093-2;P07093-3;P07093 SERPINE2 Glia-derived nexin yes no 0 0 0 0 0 9 0 1 55.539 55.539 2 0.025739 13957 TMT1-8 81.635 18.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20006 525 19767 30760 39761 39761 1 VQVLTAGSLMGLGDIISQQLVER Unmodified 2426.3203 0.32029487 1062 P39210 MPV17 Protein Mpv17 yes yes 0 0 0 0 0 9 0 1 94.401 94.401 3 3.8798E-16 29032 TMT1-8 94.389 75.097 39.424 20.259 29.345 38.17 27.75 54.64 37 22 30 37 30 52 2 2 2 2 2 2 5352.1 20007 1062 19768 30761 39762;39763 39762 2 VQVNHEK Unmodified 852.44537 0.44536545 787 P19367-4;P19367-2;P19367;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 0 5 0 1 27.184 27.184 3 0.0015804 5002 TMT1-4 119.29 60.086 317.38 183.07 243.46 203.01 289.78 153.76 298 196 245 204 291 152 1 1 1 1 1 1 14060 20008 787 19769 30762 39764 39764 1 VQVPNCDEIFYAGTGNLLLR Unmodified 2278.1416 0.14160222 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 7 0 1 77.063 77.063 3 0.016688 24113 TMT1-6 39.647 16.845 38.194 35.004 43.323 44.717 42.144 53.163 36 36 44 44 44 51 1 1 1 1 1 1 13193 20009 1287 19770 30763 39765 39765 1 VQVQDNEGCPVEALVK Unmodified 1783.8774 0.87744861 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.17 1.57 2 3 1 59.46 59.46 2;3;4 5.0504E-16 18030 TMT1-3 133.48 114.89 1839.3 2452.1 2408 1772.2 2166.3 2623.4 1739 2459 2443 1790 2235 2519 6 6 6 6 6 6 662160 20010 831 19771 30764;30765;30766;30767;30768;30769 39766;39767;39768;39769;39770;39771;39772 39770 7 VQVSYKGETK Unmodified 1137.603 0.60298831 618 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 1 7 0 2 39.941 39.941 3;4 0.0065498 9570 TMT1-6 71.555 48.977 346.99 527.68 386.22 319.85 308.16 649.99 328 524 401 319 330 618 2 2 2 2 2 2 56864 20011 618 19772 30770;30771 39773;39774 39774 2 VQVYQEPNR Unmodified 1131.5673 0.5672715 216 O60256-3;O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 0 4 0 1 36.797 36.797 2 7.4769E-05 9054 TMT1-3 119.07 82.511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20012 216 19773 30772 39775 39775 1 VQYAPERPGPQPTAETTR Unmodified 1996.9967 0.99665254 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 1 4 0 1 36.029 36.029 3 6.3742E-06 8743 TMT1-3 86.727 68.362 46.736 42.936 43.555 27.86 65.969 21.57 44 44 44 29 65 22 1 1 1 1 1 1 10817 20013 1179 19774 30773 39776 39776 1 VQYLEDTDPFACANFPEPR Unmodified 2268.0157 0.015733004 3042 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 0 0 4.33 0.471 2 1 73.787 73.787 3;4 6.1443E-31 23612 TMT1-3 150.7 136.8 107.85 168.31 125.91 116.46 150.28 158.81 102 167 131 116 154 153 4 4 4 4 4 4 36619 20014 3042 19775 30774;30775;30776 39777;39778;39779;39780 39777 4 VRDPQLVR Unmodified 981.57196 0.57196295 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 1 6 0 1 31.63 31.63 3 0.046511 6889 TMT1-5 58.426 29.05 92.275 115.82 82.767 88.724 76.238 98.029 87 116 87 87 80 94 1 1 1 1 1 1 7482.4 20015 2085 19776 30777 39781 39781 1 VREEELEK Unmodified 1030.5295 0.52948901 3097 yes yes 0 0 0 0 1 2 0 1 37.244 37.244 3 0.0044377 9862 TMT1-1 96.143 0 85.086 85.931 53.824 75.131 77.119 90.541 80 87 58 73 80 87 1 1 1 1 1 1 5747.9 + 20016 3097 19777 30778 39782 39782 1 VRGEVAPDAK Unmodified 1040.5615 0.56145784 586 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 1 5 0.816 1 1 1 31.798 31.798 3 0.0005546 6781 TMT1-4 102.05 64.704 806.26 1499.2 820.26 826.26 715.95 1165 763 1473 879 813 759 1112 3 3 3 3 3 3 124010 20017 586 19778 30779;30780;30781 39783;39784;39785 39784 3 VSAAMYK Unmodified 768.38401 0.38401075 2079 Q7L576;Q7L576-2 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 8 0 1 43.696 43.696 2 0.010436 11109 TMT1-7 108.09 69.31 84.863 85.309 91.911 95.418 98.158 120.86 80 87 94 94 102 116 1 1 1 1 1 1 6971.7 20018 2079 19779 30782 39786 39786 1 VSADNTVGR Unmodified 917.45666 0.45665842 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 3 0 1 29.628 29.628 2 0.0012384 7223 TMT1-2 122.33 61.681 54.158 33.54 66.516 34.311 57.024 60.201 51 36 65 36 58 58 1 1 1 1 1 1 9845.3 20019 60 19780 30783 39787 39787 1 VSAENLQK Unmodified 887.47125 0.47124585 228 O60610-2;O60610-3;O60610 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 0 5 0 1 40.52 40.52 2 0.037453 10327 TMT1-4 78.113 15.531 68.477 148.2 87.509 111.38 135.12 119.8 65 145 94 109 138 116 1 1 1 1 1 1 77276 20020 228 19781 30784 39788 39788 1 VSAFENPYVDAIK Unmodified 1451.7296 0.72964538 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 6 0 1 66.328 66.328 3 3.0738E-08 20538 TMT1-5 117.93 80.252 229.67 311.99 268.76 224.44 290.53 285.93 217 312 276 225 297 276 2 2 2 2 2 2 56179 20021 1211 19782 30785 39789;39790 39789 2 VSAGEAVVNR Unmodified 1000.5302 0.53015772 923 P28065-2;P28065 PSMB9 Proteasome subunit beta type-9 yes no 0 0 0 0 0 3.5 0.5 1 1 35.837 35.837 2 0.0022821 9708 TMT1-2 99.855 65.074 191.23 319.48 230.51 227.28 260.69 359.27 181 316 241 225 271 344 2 2 2 2 2 2 51515 20022 923 19783 30786;30787 39791;39792 39791 2 VSALDLAVLDQVEAR Unmodified 1597.8675 0.86753585 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 5 0 2 75.077 75.077 2;3 3.0857E-18 23788 TMT1-4 155.66 117.69 76.257 117.14 68.607 66.601 76.962 106.54 72 116 73 66 80 102 2 2 2 2 2 2 75055 20023 1720 19784 30788;30789 39793;39794 39793 2 VSAPEVSVGHK Unmodified 1108.5877 0.58767259 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6.33 1.25 1 1 1 39.914 39.914 3 2.9704E-05 10038 TMT1-5 110.66 91.882 271.82 424.55 303.07 245.18 357.62 375.69 257 421 315 247 365 362 2 2 2 2 2 2 31609 20024 1632 19785 30790;30791;30792 39795;39796;39797 39796 3 VSAPGVQGDVK Unmodified 1055.5611 0.56112349 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5.5 0.5 1 1 42.745 42.745 2;3 0.0007271 11227 TMT1-5 63.408 36.31 145.99 205.32 176.69 136.85 183.64 226.08 138 205 181 138 189 217 1 1 1 1 1 1 14882 20025 1632 19786 30793;30794 39798;39799 39799 2 VSAQEVR Unmodified 787.41882 0.41881635 720 P15311 EZR Ezrin yes yes 0 0 0 0 0 2 0 1 28.831 28.831 2 0.0099567 6541 TMT1-1 110.12 54.616 77.266 101.77 92.352 64.214 70.549 83.267 73 102 94 65 73 80 1 1 1 1 1 1 8479.9 20026 720 19787 30795 39800 39800 1 VSASPLLYTLIEK Unmodified 1432.8177 0.81773211 450 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 0 8 0 1 78.082 78.082 3 0.00039689 24611 TMT1-7 80.96 45.999 46.626 57.74 49.508 44.333 42.968 29.688 44 58 51 44 44 29 1 1 1 1 1 1 3857.9 20027 450 19788 30796 39801 39801 1 VSASTVPTDGSSR Unmodified 1262.6103 0.61025853 2092 Q7Z434;Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein yes no 0 0 0 0 0 4 0 1 34.476 34.476 2 8.0468E-08 8144 TMT1-3 123.67 78.51 70.252 32.437 67.574 34.524 42.372 29.705 66 36 66 36 43 29 1 1 1 1 1 1 5638.3 20028 2092 19789 30797 39802 39802 1 VSASVAEVQEQYTER Unmodified 1694.8111 0.81114318 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 2 0 1 51.269 51.269 3 5.2193E-08 15400 TMT1-1 112.5 96.007 23.299 28.831 27.142 53.616 27.092 22.679 22 29 29 51 29 22 1 1 1 1 1 1 5353.6 20029 1916 19790 30798 39803 39803 1 VSCLGVTDDGMAVATGSWDSFLK Oxidation (M) 2431.1036 0.10356173 1454;1453 P62879;P62879-2;P62873 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 1 0 0 7 0 1 77.464 77.464 3 2.4614E-12 24301 TMT1-6 94.837 86.342 15.653 45.16 35.942 4.9668 28.816 37.554 15 44 36 7 29 36 1 1 1 1 1 1 6022.1 20030 1454;1453 19791 30799 39804 39804 233 1 VSCLGVTDDGMAVATGSWDSFLK Unmodified 2415.1086 0.10864711 1454;1453 P62879;P62879-2;P62873 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 0 7 0 2 83.137 83.137 3;4 1.1747E-17 26610 TMT1-6 108.37 92.952 160.69 233.62 206.73 151.37 188.13 319.76 152 233 211 153 197 305 3 3 3 3 3 3 69237 20031 1454;1453 19791 30800;30801 39805;39806;39807 39806 3 VSCSPVSAQLLSVLQGLLHLEPTLR Unmodified 2716.4946 0.49457084 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 9 0 1 98.998 98.998 4 1.8881E-16 30610 TMT1-8 88.239 75.758 23.409 51.948 44.121 5.6536 35.821 45.882 22 51 44 7 36 44 1 2 2 1 2 2 5588.8 20032 1916 19792 30802 39808;39809 39808 2 VSDATGQMNLTK Unmodified 1263.6129 0.61290107 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 6 0 1 48.241 48.241 2 4.1142E-10 13456 TMT1-5 158.42 110.33 92.27 123.36 77.21 33.29 77.431 137.44 87 123 80 36 80 131 1 1 1 1 1 1 12434 20033 1066 19793 30803 39810 39810 1 VSDCIPLSHR Unmodified 1182.5815 0.58154136 20 B0I1T2 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 yes yes 0 0 0 0 0 5 0 1 39.139 39.139 3 0.020937 9686 TMT1-4 54.094 30.665 100.08 101.01 46.317 51.64 71.383 75.781 94 102 51 51 73 73 1 1 1 1 1 1 9541.2 20034 20 19794 30804 39811 39811 1 VSDEVGFGLEHVSR Unmodified 1529.7474 0.74742071 2050 Q6VY07;Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 yes no 0 0 0 0 0 4 0 1 50.935 50.935 3 1.362E-06 14626 TMT1-3 103.79 75.822 53.954 88.018 54.57 59.106 55.078 83.708 51 87 58 58 58 80 1 1 1 1 1 1 16042 20035 2050 19795 30805 39812 39812 1 VSDFGLSR Unmodified 879.44503 0.4450311 1601 Q06187;Q06187-2;Q9UF33-2;Q15375-2;P54756;Q9UF33;P54756-2;P29322;Q15375;P54753;Q15375-4;P54760;P29323-3;Q9UF33-3;P29323-2;P54762;P29320;P29317;P54756-3;P54762-5;P29323 BTK;EPHA6;EPHA7;EPHA5;EPHA8;EPHB3;EPHB4;EPHB2;EPHB1;EPHA3;EPHA2 Tyrosine-protein kinase BTK;Ephrin type-A receptor 6;Ephrin type-A receptor 7;Ephrin type-A receptor 5;Ephrin type-A receptor 8;Ephrin type-B receptor 3;Ephrin type-B receptor 4;Ephrin type-B receptor 2;Ephrin type-B receptor 1;Ephrin type-A receptor 3;Ephrin type-A receptor 2 yes no 0 0 0 0 0 6 0 1 48.263 48.263 2 0.0063932 13494 TMT1-5 105.81 45.1 238.08 316.32 293.95 186.42 256.7 255.98 225 317 298 191 262 247 1 1 1 1 1 1 29126 20036 1601 19796 30806 39813 39813 1 VSDFGLTK Unmodified 865.45453 0.45453316 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 7 0 1 54.823 54.823 2 0.010493 15345 TMT1-6 99.139 49.012 450.48 1011.8 796.28 676.66 784.16 901.85 429 992 822 676 809 867 2 2 2 2 2 2 64351 20037 1083 19797 30807 39814;39815 39814 2 VSDFYDIEER Unmodified 1271.567 0.56699673 1870 Q15746-9;Q15746-11;Q15746-7;Q15746-4;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-5 MYLK Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form yes no 0 0 0 0 0 2.5 0.5 1 1 57.83 57.83 2 5.045E-29 18080 TMT1-1 213.45 145.43 598.38 761.23 676.75 523.06 845.05 826.55 565 764 692 530 858 798 4 4 4 4 4 4 108200 20038 1870 19798 30808;30809 39816;39817;39818;39819 39817 4 VSDILHSIFSSYK Unmodified 1494.7718 0.77184455 65 O00410;O00410-3;O00410-2 IPO5 Importin-5 yes no 0 0 0 0 0 9 0 1 77.795 77.795 3 0.0011252 22710 TMT1-8 66.989 40.859 46.753 50.537 34.392 28.998 34.491 53.382 44 51 36 29 36 51 1 1 1 1 1 1 4956.9 20039 65 19799 30810 39820 39820 1 VSDSDNNEGSSFPAPPK Unmodified 1746.7697 0.7696723 126 O15117-3;O15117-2 FYB FYN-binding protein yes no 0 0 0 0 0 4 0 1 48.892 48.892 3 1.7343E-08 13835 TMT1-3 103.66 80.854 115.54 137.01 121.49 62.812 52.782 145.6 109 138 123 65 58 138 1 1 1 1 1 1 30400 20040 126 19800 30811 39821 39821 1 VSDSISAQYPVVDHEFDAVVVGAGGAGLR Unmodified 2914.4461 0.44610032 970 P31040;P31040-2;P31040-3 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 0 5 0 1 71.556 71.556 4 9.7483E-09 22400 TMT1-4 71.295 57.564 68.689 70.001 118.19 62.274 91.819 106.11 65 72 116 65 94 102 2 2 2 2 2 2 14117 20041 970 19801 30812 39822;39823 39822 2 VSEAIEK Unmodified 774.41233 0.41233399 1838 Q15257-2 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes yes 0 0 0 0 0 4 0 1 41.542 41.542 2 0.021743 10916 TMT1-3 96.253 41.704 196.23 458.57 355.21 300.39 395.12 306.39 187 449 367 301 401 298 1 1 1 1 1 1 44116 20042 1838 19802 30813 39824 39824 1 VSEEHDVLR Unmodified 1082.5356 0.53563702 701 P14317;P14317-2 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 0 0 2 0 1 32.661 32.661 3 1.2314E-09 8069 TMT1-1 174.02 77.075 122.64 181.75 153.36 184.97 197.81 175.58 116 181 160 181 203 170 1 1 1 1 1 1 28322 20043 701 19803 30814 39825 39825 1 VSEEIEDIIK Unmodified 1173.6129 0.61288429 258 O75223;O75223-3 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 0 0 3 0.816 1 1 1 67.591 67.591 2 0.010638 21797 TMT1-1 83.358 31.363 124.05 136.22 134.55 134.05 117.27 152.29 117 138 138 132 123 146 3 3 3 3 3 3 16898 20044 258 19804 30815;30816;30817 39826;39827;39828 39826 3 VSEGGPAEIAGLQIGDK Unmodified 1639.8417 0.84171503 111 O14907 TAX1BP3 Tax1-binding protein 3 yes yes 0 0 0 0 0 5 0 1 62.713 62.713 3 4.1603E-08 18936 TMT1-4 102.58 58.586 46.619 50.164 57.227 51.285 55.694 76.229 44 51 58 51 58 73 1 1 1 1 1 1 11421 20045 111 19805 30818 39829 39829 1 VSEGVEQFEDIWQK Unmodified 1692.7995 0.79951586 255 O75175 CNOT3 CCR4-NOT transcription complex subunit 3 yes yes 0 0 0 0 0 5 0 1 73.417 73.417 3 1.2552E-12 23184 TMT1-4 115.78 71.164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20046 255 19806 30819 39830 39830 1 VSEHFSAMFK Oxidation (M) 1197.5488 0.54884425 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 1 0 0 7 0 1 45.545 45.545 3 0.0043109 11777 TMT1-6 86.882 57.583 339.91 336.04 294.94 344.75 319.43 319.21 320 342 307 337 331 308 1 1 1 1 1 1 28657 20047 2650 19807 30820 39831 39831 311 1 VSEHFSAMFK Unmodified 1181.5539 0.55392962 2650 Q9H4B7 TUBB1 Tubulin beta-1 chain yes yes 0 0 0 0 0 8.5 0.5 1 1 51.595 51.595 3 5.8122E-09 12355 TMT1-8 160.36 114.76 1342.7 1708.2 1558.1 1239.6 1272.1 2023.2 1268 1715 1592 1241 1337 1932 3 3 3 3 3 3 250710 20048 2650 19807 30821;30822 39832;39833;39834 39834 3 VSEIINNAIVHYR Unmodified 1526.8205 0.82052608 2108 Q86UF1 TSPAN33 Tetraspanin-33 yes yes 0 0 0 0 0 8 0 1 60.514 60.514 3 0.0014636 17751 TMT1-7 55.196 25.192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20049 2108 19808 30823 39835 39835 1 VSELFDK Unmodified 836.42798 0.42798405 2928 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 0 6 0 1 58.522 58.522 2 0.042562 17526 TMT1-5 85.064 20.026 176.63 231.02 234.33 165.15 181.61 247.46 167 232 237 167 189 237 1 1 1 1 1 1 28869 20050 2928 19809 30824 39836 39836 1 VSELHLEVK Unmodified 1052.5866 0.58660996 2926 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 49.125 49.125 3 4.4828E-05 13674 TMT1-5 113.71 74.488 330.37 522.84 297.37 258.42 485.66 497.82 312 517 316 261 492 480 2 2 2 2 2 2 42028 20051 2926 19810 30825;30826 39837;39838;39839 39839 3 VSELKEELK Unmodified 1073.5968 0.5968403 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 1 5 0 1 51.694 51.694 3 0.023011 14628 TMT1-4 63.624 20.317 428.86 812.62 450.75 542.95 678.35 750.29 406 798 486 533 697 722 2 2 2 2 2 2 63168 20052 1545 19811 30827 39840;39841 39840 2 VSEQGLIEILK Unmodified 1227.7075 0.70745338 102 O14737 PDCD5 Programmed cell death protein 5 yes yes 0 0 0 0 0 6 0 1 71.077 71.077 3 0.0001278 22456 TMT1-5 75.045 30.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20053 102 19812 30828 39842 39842 1 VSETLQEIYSSEWDGHEELK Unmodified 2378.0914 0.091400367 2849 Q9UBW5;Q9UBW5-3;Q9UBW5-2 BIN2 Bridging integrator 2 yes no 0 0 0 0 0 4.33 0.471 2 1 69.688 69.688 3;4 2.3108E-32 21981 TMT1-3 154.48 140.23 430.79 592.59 493.49 413.88 489.76 475.32 407 592 508 414 502 459 5 5 5 5 5 5 153160 20054 2849 19813 30829;30830;30831 39843;39844;39845;39846;39847 39843 5 VSEVKPTYR Unmodified 1077.5819 0.58185894 1539 Q00577 PURA Transcriptional activator protein Pur-alpha yes yes 0 0 0 0 1 6 0 1 36.263 36.263 3 0.006528 8717 TMT1-5 78.513 55.368 332.83 487.04 455.89 366.73 442.52 573.67 315 486 465 368 458 550 1 1 1 1 1 1 28802 20055 1539 19814 30832 39848 39848 1 VSEYVPEIVNFVQK Unmodified 1649.8665 0.86647322 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 7 0 1 77.779 77.779 3 7.1746E-11 24416 TMT1-6 127.02 94.329 70.173 79.705 40.875 35.841 56.938 91.117 66 80 44 36 59 87 1 1 1 1 1 1 12607 20056 1185 19815 30833 39849 39849 1 VSFELFADK Unmodified 1054.5335 0.53351176 1461 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 0 0 5.25 2.49 1 1 2 70.061 70.061 2 2.6773E-05 21194 TMT1-6 154.12 81.295 6311.8 10130 8115.8 5905.3 9973.5 8857.4 5975 10048 8335 6017 10085 8576 7 7 7 7 7 7 1176500 20057 1461 19816 30834;30835;30836;30837 39850;39851;39852;39853;39854;39855;39856 39853 7 VSFELFADKVPK Unmodified 1378.7497 0.74965254 1461 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 0 1 8.67 0.471 1 2 66.6 66.6 3;4 2.2192E-07 20124 TMT1-7 119.69 100.11 5003.7 6677.4 4212.7 4104.7 3709 8189.8 4718 6659 4456 4049 3995 7782 5 5 5 5 5 5 601020 20058 1461 19817 30838;30839;30840 39857;39858;39859;39860;39861 39857 5 VSFLSALEEYTK Unmodified 1385.7078 0.70784731 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 7.67 0.471 1 2 80.295 80.295 2;3 6.1686E-09 25420 TMT1-6 136.7 96.632 185.41 199.67 228.67 211.82 216.79 257.12 175 203 232 210 225 247 4 4 4 4 4 4 33086 20059 431 19818 30841;30842;30843 39862;39863;39864;39865 39862 4 VSFYQLSHFLQCK Unmodified 1655.813 0.81299786 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 9 0 1 70.708 70.708 3 9.0886E-12 19980 TMT1-8 127.76 85.201 60.976 93.697 132.02 85.23 105.96 120.63 58 94 131 87 109 116 1 1 1 1 1 1 20508 20060 748 19819 30844 39866 39866 1 VSGGLEVLAEK Unmodified 1100.6077 0.60773933 1064 P39687;O43423 ANP32A;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C yes no 0 0 0 0 0 5.67 0.471 1 2 59.654 59.654 2;3 6.2852E-12 17858 TMT1-4 175.86 109.24 460.15 843.53 575.82 531.9 636.76 757.88 436 831 603 529 657 728 4 4 4 4 4 4 112620 20061 1064 19820 30845;30846;30847 39867;39868;39869;39870 39868 4 VSGLGEK Unmodified 688.37555 0.37555455 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.5 2.5 1 1 40.658 40.658 2 0.015119 10379 TMT1-5 101.41 12.289 9600.1 12198 11488 7689.4 11123 12372 9068 12253 11655 7853 11378 11904 3 3 3 3 3 3 1289000 20062 831 19821 30848;30849 39871;39872;39873 39873 3 VSGNQHEELQNVR Unmodified 1508.7332 0.73316763 2284 Q8WXF7-2;Q8WXF7 ATL1 Atlastin-1 yes no 0 0 0 0 0 3 0 1 30.253 30.253 3 2.7361E-08 7433 TMT1-2 119.21 101.11 46.785 34.436 42.648 59.659 63.445 52.556 44 36 44 58 65 51 1 1 1 1 1 1 6608.1 20063 2284 19822 30850 39874 39874 1 VSGQGLHEGHTFEPAEFIIDTR Unmodified 2439.1819 0.18188713 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 0.816 1 1 1 56.387 56.387 4 7.9737E-23 16575 TMT1-4 119.02 99.764 661.95 786.77 611.35 638.01 810.19 774.25 624 791 638 631 828 748 7 7 7 7 7 7 165080 20064 831 19823 30851;30852;30853 39875;39876;39877;39878;39879;39880;39881 39879 7 VSGSELVQK Unmodified 945.51311 0.51311067 1416 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 0 6 0 1 44.248 44.248 2 0.00076506 11871 TMT1-5 88.181 20.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20065 1416 19824 30854 39882 39882 1 VSGSFPEDSSK Unmodified 1138.5142 0.51423288 147 O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 0 4.5 0.5 1 1 43.744 43.744 2;3 0.00020508 11500 TMT1-4 108.1 70.374 278.17 316.85 227.67 235.96 273.51 339.71 262 319 239 233 283 326 3 3 3 3 3 3 12986 20066 147 19825 30855;30856 39883;39884;39885 39885 3 VSGYLNLAADLAHNFTDGLAIGASFR Unmodified 2692.3609 0.36091413 2292 Q92504 SLC39A7 Zinc transporter SLC39A7 yes yes 0 0 0 0 0 9 0 1 95.283 95.283 4 2.6747E-06 29364 TMT1-8 58.913 42.034 7.3451 15.214 14.984 6.641 6.2176 23.275 7 15 15 7 7 22 1 1 1 1 1 1 2912.7 20067 2292 19826 30857 39886 39886 1 VSHFLPWIK Unmodified 1125.6335 0.63350057 818 P20718;P20718-2;P20718-3 GZMH Granzyme H yes no 0 0 0 0 0 9 0 1 63.154 63.154 3 0.0025672 16964 TMT1-8 81.594 39.594 107.91 137.19 141.54 147.55 132.9 135.85 102 138 145 145 138 131 1 1 1 1 1 1 17259 20068 818 19827 30858 39887 39887 1 VSHLLGINVTDFTR Unmodified 1570.8467 0.84674083 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 6 3.56 1 1 1 64.036 64.036 3 2.9387E-37 17174 TMT1-8 200.9 180.31 1189.4 1571.8 1293.8 960.06 1341.2 1542.6 1123 1573 1328 972 1375 1483 5 5 5 5 5 5 1026800 20069 1019 19828 30859;30860;30861 39888;39889;39890;39891;39892 39891 5 VSHQAGDHWLIR Unmodified 1417.7215 0.72148073 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 0 7 0 1 37.514 37.514 4 0.0005045 8614 TMT1-6 81.709 62.068 38.025 82.024 31.809 45.562 33.729 53.404 36 80 36 44 36 51 1 1 1 1 1 1 4406.6 20070 1796 19829 30862 39893 39893 1 VSHVLAALQAGNR Unmodified 1334.7419 0.74188183 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 6.33 3.77 1 2 50.22 50.22 2;3 1.6697E-28 11663 TMT1-8 193.21 146.39 883.77 1203.2 1028.2 773.93 1037.2 1260.3 835 1203 1053 782 1067 1210 4 4 4 4 4 4 1107300 20071 3010 19830 30863;30864;30865 39894;39895;39896;39897 39895 4 VSHVSTGGGASLELLEGK Unmodified 1739.9054 0.90537792 397 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 0 6.4 1.02 1 2 1 1 53.255 53.255 3;4 8.7041E-52 15377 TMT1-5 205.98 195.12 1021.4 1443.3 1320.1 1023.4 1434.4 1393.9 966 1442 1347 1033 1462 1346 6 6 6 6 6 6 266580 20072 397 19831 30866;30867;30868;30869;30870 39898;39899;39900;39901;39902;39903 39899 6 VSIAELAQASNSLIAWGR Unmodified 1885.0058 0.005760665 2416 Q96HY6 DDRGK1 DDRGK domain-containing protein 1 yes yes 0 0 0 0 0 9 0 1 85.15 85.15 3 3.1648E-24 25569 TMT1-8 124.29 102.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20073 2416 19832 30871 39904 39904 1 VSIAVIK Unmodified 728.47963 0.47962569 1569 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 0 0 0 0 0 9 0 1 54.545 54.545 2 0.014103 13534 TMT1-8 105.12 23.482 30.08 96.441 92.526 72.812 77.739 75.6 29 94 94 73 80 73 1 1 1 1 1 1 5464.1 20074 1569 19833 30872 39905 39905 1 VSIFFDYAR Unmodified 1116.5604 0.56039521 2874 Q9UI12-2;Q9UI12 ATP6V1H V-type proton ATPase subunit H yes no 0 0 0 0 0 9 0 1 69.727 69.727 2 0.038422 19569 TMT1-8 66.27 38.745 84.511 139.37 105.29 86.666 114.28 89.481 80 138 109 87 116 87 1 1 1 1 1 1 7701.5 20075 2874 19834 30873 39906 39906 1 VSILESLDK Unmodified 1002.5597 0.55972651 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 0 6 0 1 65.96 65.96 2 0.00024842 20410 TMT1-5 143.7 74.505 68.661 86.112 109.26 71.109 115.25 81.991 65 87 109 73 116 80 1 1 1 1 1 1 11018 20076 635 19835 30874 39907 39907 1 VSILESLDKWER Unmodified 1473.7827 0.78274359 635 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 1 7 0 1 68.995 68.995 3 8.6569E-11 21005 TMT1-6 161.93 140.37 626.03 806.12 680.9 585.01 501.93 1171.1 591 808 701 581 544 1112 1 1 1 1 1 1 101760 20077 635 19836 30875 39908 39908 1 VSILFGHENR Unmodified 1170.6146 0.61455605 106 O14775-3;O14775-2;O14775 GNB5 Guanine nucleotide-binding protein subunit beta-5 yes no 0 0 0 0 0 8 0 1 48.249 48.249 3 0.0013127 12889 TMT1-7 88.948 77.083 92.354 77.185 102.12 70.559 167.1 126.35 87 80 102 73 167 123 1 1 1 1 1 1 5226.3 20078 106 19837 30876 39909 39909 1 VSISEGDDKIEYR Unmodified 1509.7311 0.73110195 841 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 1 4 0 1 46.922 46.922 3 1.1815E-10 13048 TMT1-3 132.93 103.24 354.26 456.18 306.15 318.22 416.25 459.29 334 456 323 315 427 442 1 1 1 1 1 1 38974 20079 841 19838 30877 39910 39910 1 VSITEAMHR Unmodified 1042.523 0.52296385 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 6 0 1 39.11 39.11 3 0.00036163 9794 TMT1-5 111.46 85.561 61.515 87.641 46.613 67.356 48.432 52.984 58 87 51 65 51 51 1 1 1 1 1 1 7705.5 20080 1833 19839 30878 39911 39911 1 VSKQEEASGGPTAPK Unmodified 1484.7471 0.74708636 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 1 5.5 0.5 1 1 35.221 35.221 3 6.6313E-05 8120 TMT1-4 88.56 51.404 285.29 342.23 272.09 272.61 218.05 382.87 269 344 283 268 233 365 2 2 2 2 2 2 40119 20081 1225 19840 30879;30880 39912;39913 39912 2 VSLDVNHFAPDELTVK Unmodified 1782.9152 0.91521432 476 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 0 6 0.632 1 3 1 63.756 63.756 2;3;4 1.7624E-11 19560 TMT1-5 118.53 89.552 1183.3 1340 1248.9 1092.2 1081.9 1545.7 1116 1354 1279 1086 1133 1479 6 6 6 6 6 6 270560 20082 476 19841 30881;30882;30883;30884;30885 39914;39915;39916;39917;39918;39919 39917 6 VSLEEIYSGCTK Unmodified 1384.6544 0.65443153 886 P25685-2;P25685;Q9UDY4 DNAJB1;DNAJB4 DnaJ homolog subfamily B member 1;DnaJ homolog subfamily B member 4 yes no 0 0 0 0 0 6 0 1 60.315 60.315 3 0.00030754 18247 TMT1-5 89.301 66.422 77.052 147.59 89.603 64.235 78.133 75.588 73 145 94 65 80 73 1 1 1 1 1 1 10215 20083 886 19842 30886 39920 39920 1 VSLNILPPEEEEETHK Unmodified 1862.9262 0.92617294 2132 Q86YW5;Q86YW5-2 TREML1 Trem-like transcript 1 protein yes no 0 0 0 0 0 3 1.22 1 1 2 57.36 57.36 3;4 8.2972E-13 17123 TMT1-3 128.9 125.05 1774.9 2439.3 2226.6 1592.9 2044.5 2754.8 1678 2440 2267 1614 2115 2639 6 6 6 6 6 6 370620 20084 2132 19843 30887;30888;30889;30890 39921;39922;39923;39924;39925;39926 39925 6 VSLVLAPALAACGCK Unmodified 1528.8106 0.81055502 800 P19971;P19971-2 TYMP Thymidine phosphorylase yes no 0 0 0 0 0 9 0 2 70.235 70.235 2;3 1.2228E-10 19737 TMT1-8 118.9 93.468 144.95 227.09 151.6 160.77 211.55 264.73 137 225 160 159 218 254 3 3 3 3 3 3 45545 20085 800 19844 30891;30892 39927;39928;39929 39927 3 VSMPDVDLNLK Unmodified 1229.6326 0.63257388 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 66.052 66.052 3 0.0067756 20479 TMT1-5 65.278 32.754 30.758 28.171 36.523 13.107 59.062 29.229 29 29 36 15 58 29 1 1 1 1 1 1 5194.3 20086 1632 19845 30893 39930 39930 1 VSMPDVELNLK Unmodified 1243.6482 0.64822394 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 6 0 1 66.319 66.319 3 0.0006403 20583 TMT1-5 64.439 31.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20087 1632 19846 30894 39931 39931 1 VSMSPVLHTQNK Unmodified 1339.6918 0.69182009 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 8 0 1 42.34 42.34 3 0.0018211 10567 TMT1-7 74.611 52.413 68.987 94.575 47.221 43.524 93.231 90.082 65 94 51 44 94 87 1 1 1 1 1 1 5749.1 20088 2259 19847 30895 39932 39932 1 VSNEEVTEELLHVNDDLNNVFLR Unmodified 2697.3246 0.3245882 2063 Q6ZVM7-5;Q6ZVM7;Q6ZVM7-3;Q6ZVM7-2;Q6ZVM7-4 TOM1L2 TOM1-like protein 2 yes no 0 0 0 0 0 4 0 1 80.273 80.273 3 1.9492E-09 26125 TMT1-3 86.761 76.763 7.3164 22.689 13.47 6.2731 30.573 15.118 7 22 14 7 30 15 1 1 1 1 1 1 6169.1 20089 2063 19848 30896 39933 39933 1 VSPDDTPGAILQSFFTK Unmodified 1821.9149 0.91487997 1165 P48736 PIK3CG Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform yes yes 0 0 0 0 0 8 0 1 88.316 88.316 3 1.745E-14 28519 TMT1-7 127.75 124.51 30.816 35.889 20.16 29.97 27.923 30.117 29 36 22 29 29 29 1 1 1 1 1 1 7901.9 20090 1165 19849 30897 39934 39934 1 VSPEEAIK Unmodified 871.4651 0.46509784 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 0 4 0 1 44.273 44.273 2 0.0061428 12014 TMT1-3 109.21 29.035 230.54 349.12 271.96 248.25 234.9 320.56 218 347 282 246 246 307 1 1 1 1 1 1 30528 20091 492 19850 30898 39935 39935 1 VSPETVDSVIMGNVLQSSSDAIYLAR Unmodified 2750.3797 0.37966024 1102 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 0 6 0 1 88.371 88.371 3 8.3145E-12 29230 TMT1-5 89.622 78.932 0 7.0615 23.119 5.8649 21.702 30.295 0 7 22 7 22 29 0 1 1 1 1 1 7403 20092 1102 19851 30899 39936 39936 1 VSPLTFGR Unmodified 875.4865 0.48650199 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6 3.56 1 1 1 52.066 52.066 2 4.0449E-22 12534 TMT1-8 209.9 115.49 947.13 1053 786.77 875.67 751.59 1523.2 892 1062 826 857 807 1449 4 4 4 4 4 4 183520 20093 372 19852 30900;30901;30902 39937;39938;39939;39940 39940 4 VSPPLMAPPCIWTFAK Unmodified 1813.9259 0.92591913 2041 Q6PL24 TMED8 Protein TMED8 yes yes 0 0 0 0 0 9 0 1 81.913 81.913 3 0.032636 24368 TMT1-8 37.583 16.63 30.772 44.401 20.339 14.502 36.22 22.418 29 44 22 15 36 22 1 1 1 1 1 1 4822 20094 2041 19853 30903 39941 39941 1 VSPPSCPPHR Unmodified 1132.5448 0.54476192 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 7.5 1.5 1 1 28.807 28.807 3 0.00015088 5717 TMT1-5 107.08 66.975 107.92 149.07 130.77 106.28 153.1 151.27 102 149 134 107 156 146 3 3 3 3 3 3 7537.8 20095 471 19854 30904;30905 39942;39943;39944 39942 3 VSPVIINTMITITSALYTTK Unmodified 2165.2017 0.20174286 2447 Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 0 0 0 0 9 0 1 103.8 103.8 3 6.949E-09 32398 TMT1-8 79.467 61.55 23.4 25.875 12.653 18.511 21.765 11.543 22 26 14 18 22 11 2 2 2 2 2 1 1934.4 20096 2447 19855 30906 39945;39946 39946 2 VSQAAADLK Unmodified 901.4869 0.48689592 1475 P63218 GNG5 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 yes yes 0 0 0 0 0 5.33 0.471 2 1 43.762 43.762 2;3 0.0043778 11660 TMT1-5 99.568 40.651 492.85 829.99 681.21 682.41 726.93 824.59 467 822 706 674 752 793 3 3 3 3 3 3 107090 20097 1475 19856 30907;30908;30909 39947;39948;39949 39949 3 VSQGSKDPAEGDGAQPEETPR Unmodified 2153.9825 0.98251862 1792 Q14697 GANAB Neutral alpha-glucosidase AB yes yes 0 0 0 0 1 2.5 0.5 1 1 34.967 34.967 3 4.774E-10 9001 TMT1-1 95.122 79.881 100.27 161.08 143.35 99.83 165.46 134.92 95 160 146 102 167 131 2 2 2 2 2 2 30782 20098 1792 19857 30910;30911 39950;39951 39950 2 VSQLMEWTNK Unmodified 1234.6016 0.6016081 2615 Q9H0U3;Q9H0U3-2 MAGT1 Magnesium transporter protein 1 yes no 0 0 0 0 0 8 0 1 64.75 64.75 3 0.041381 19469 TMT1-7 46.592 22.741 85.168 78.602 46.354 82.662 107.14 89.685 80 80 51 80 109 87 1 1 1 1 1 1 11554 20099 2615 19858 30912 39952 39952 1 VSQMAQYFEPLTLAAVGAASK Oxidation (M) 2197.1089 0.10890511 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 8.33 0.471 2 1 75.729 75.729 3;4 1.4168E-08 21928 TMT1-8 75.054 48.619 300.61 375.66 374.57 281.44 353.53 385.4 284 378 380 284 363 371 5 5 5 5 5 5 47172 20100 3010 19859 30913;30914;30915 39953;39954;39955;39956;39957 39957 345 5 VSQMAQYFEPLTLAAVGAASK Unmodified 2181.114 0.11399049 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 8.33 0.471 2 1 87.082 87.082 3;4 9.3191E-33 26251 TMT1-8 146.19 117.38 935.24 1255.7 989.05 872.32 1160.4 1319.6 883 1255 1024 872 1191 1269 7 7 7 7 7 7 364430 20101 3010 19859 30916;30917;30918 39958;39959;39960;39961;39962;39963;39964 39963 7 VSQNSQLANEK Unmodified 1216.6048 0.60477922 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 5 0 1 36.609 36.609 3 0.00023109 8685 TMT1-4 99.5 45.014 99.712 83.8 122.33 117.4 111.26 136.47 94 87 123 116 116 131 1 1 1 1 1 1 7786.8 20102 1708 19860 30919 39965 39965 1 VSQPIEGHAASFAQFK Unmodified 1715.8631 0.86311917 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8 1 1 1 51.452 51.452 3 4.2818E-16 14104 TMT1-6 136.39 102.98 258.17 305.48 352.46 269.87 283.27 314.91 244 309 355 271 293 303 2 2 2 2 2 2 51826 20103 1540 19861 30920;30921 39966;39967 39966 2 VSQTTWDSGFCAVNPK Unmodified 1795.8199 0.81993373 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 7.5 0.5 1 1 60.002 60.002 3 3.6923E-16 17429 TMT1-6 137.19 118.83 868.52 1422.9 1060.8 913.52 1067.1 1574.9 822 1409 1101 912 1112 1506 3 3 3 3 3 3 328150 20104 971 19862 30922;30923 39968;39969;39970 39968 3 VSSDEDLK Unmodified 891.41854 0.41854158 3038 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 0 3 0 1 39.962 39.962 2 0.0091571 11295 TMT1-2 67.563 23.428 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20105 3038 19863 30924 39971 39971 1 VSSDGSWLK Unmodified 977.48181 0.48181054 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 7 0 1 52.987 52.987 2 0.00083349 14699 TMT1-6 128.12 73.916 380.08 311.07 417.37 248.73 213.57 545.03 358 323 415 254 233 517 1 1 1 1 1 1 39118 20106 1723 19864 30925 39972 39972 1 VSSDVIDQK Unmodified 989.50294 0.50293991 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 4 0 1 45.169 45.169 3 0.0023885 12334 TMT1-3 85.744 55.174 115.28 182.69 126.75 77.493 127.22 181.85 109 181 131 80 131 174 1 1 1 1 1 1 15146 20107 2953 19865 30926 39973 39973 1 VSSFEEK Unmodified 824.3916 0.39159855 1075 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 0 4.5 0.5 1 1 43.328 43.328 2 0.010348 11314 TMT1-4 108.46 47.813 824.63 1721.2 1151.5 1129.6 1380.3 1638.5 783 1688 1210 1120 1423 1574 3 3 3 3 3 3 169710 20108 1075 19866 30927;30928 39974;39975;39976 39975 3 VSSFLPWIR Unmodified 1103.6128 0.61276513 564 P08311 CTSG Cathepsin G yes yes 0 0 0 0 0 9 0 1 75.559 75.559 2 0.0012895 21859 TMT1-8 125.58 88.743 214.92 250.1 275.12 263.69 217.85 370.08 203 253 280 260 232 353 1 1 1 1 1 1 31764 20109 564 19867 30929 39977 39977 1 VSSGYVPPPVATPFSSK Unmodified 1718.8879 0.88793694 1881 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 0 8.25 0.433 3 1 62.218 62.218 2;3;4 1.1334E-24 18656 TMT1-7 131.06 117.25 1045.1 1277.7 1073.9 844.55 1031.8 1386.2 986 1284 1103 849 1069 1328 4 4 4 4 4 4 230110 20110 1881 19868 30930;30931;30932;30933 39978;39979;39980;39981;39982 39981 5 VSSIDLEIDSLSSLLDDMTK Oxidation (M) 2196.0719 0.071910479 1881 Q15942 ZYX Zyxin yes yes 0 0 1 0 0 5 0 1 91.46 91.46 3 0.020313 30163 TMT1-4 43.696 27.39 46.95 27.34 20.929 22.4 21.198 22.847 44 29 22 22 22 22 1 1 1 1 1 1 3286.9 20111 1881 19869 30934 39983 39983 270 1 VSSIDLEIDSLSSLLDDMTK Unmodified 2180.077 0.076995857 1881 Q15942 ZYX Zyxin yes yes 0 0 0 0 0 5.5 0.5 1 1 101.93 101.93 3 5.978E-31 33673 TMT1-5 148.26 140.81 41.22 72.024 44.293 45.614 49.482 68.944 39 71 47 45 51 66 4 4 4 4 3 4 14056 20112 1881 19869 30935;30936 39984;39985;39986;39987 39987 4 VSSLPLLLPYWR Unmodified 1442.8286 0.82857157 1921 Q2TAA2;Q2TAA2-2 IAH1 Isoamyl acetate-hydrolyzing esterase 1 homolog yes no 0 0 0 0 0 9 0 2 83.61 83.61 2;3 0.00072848 25008 TMT1-8 73.666 49.68 54.045 64.526 59.229 59.025 44.627 53.093 51 65 61 58 47 51 2 2 2 2 2 2 11127 20113 1921 19870 30937;30938 39988;39989 39989 2 VSSQCADTR Unmodified 1022.4451 0.44510746 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 24.006 24.006 2 9.9549E-14 4914 TMT1-2 187.23 165.79 77.568 47.568 87.646 72.793 94.251 51.676 73 51 87 73 95 51 2 2 2 2 2 2 11619 20114 471 19871 30939;30940 39990;39991 39991 2 VSSQNLVAIPVYVK Unmodified 1515.8661 0.86607929 2974 Q9Y2T2 AP3M1 AP-3 complex subunit mu-1 yes yes 0 0 0 0 0 9 0 1 66.721 66.721 3 1.4732E-05 18377 TMT1-8 93.823 68.437 68.808 125.38 51.204 82.669 91.431 90.133 65 123 58 80 94 87 1 1 1 1 1 1 7603.8 20115 2974 19872 30941 39992 39992 1 VSSQSFSEIER Unmodified 1267.6044 0.60444487 2189 Q8N6H7-2;Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 0 0 0 0 0 4 0 1 45.59 45.59 2 0.0014523 12539 TMT1-3 98.105 45.238 69.092 72.202 48.536 44.13 56.829 52.744 65 73 51 44 58 51 1 1 1 1 1 1 7461.6 20116 2189 19873 30942 39993 39993 1 VSSTEAVAR Unmodified 918.47706 0.47705951 699 P14222 PRF1 Perforin-1 yes yes 0 0 0 0 0 3.5 0.5 1 1 30.26 30.26 2 0.0020718 7432 TMT1-2 106.93 66.353 145.07 277.25 269.42 241.6 247.88 256.23 138 274 275 240 256 247 2 2 2 2 2 2 38611 20117 699 19874 30943;30944 39994;39995 39994 2 VSTALSCLLGLPLR Unmodified 1498.8541 0.85413439 69 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 0 0 0 9 0 1 84.135 84.135 3 8.6865E-07 25248 TMT1-8 98.902 86.275 46.832 43.203 27.252 29.134 49.897 61.47 44 44 29 29 51 59 2 2 2 2 2 2 5385.7 20118 69 19875 30945 39996;39997 39997 2 VSTAVLSITAK Unmodified 1088.6441 0.64412484 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 0 9 0 1 59.961 59.961 3 0.00025895 15689 TMT1-8 88.441 65.611 108.02 152.6 110.56 117.83 125.88 166.97 102 152 116 116 131 160 1 1 1 1 1 1 13243 20119 2465 19876 30946 39998 39998 1 VSTEVDAR Unmodified 875.43486 0.43486035 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 2.5 0.5 1 1 32.093 32.093 2 7.5323E-08 7927 TMT1-1 173.28 111.79 423.79 627.1 557.44 487.16 516.99 650.43 401 625 572 485 537 624 3 3 3 3 3 3 172620 20120 1053 19877 30947;30948 39999;40000;40001 40000 3 VSTEVTLAVK Unmodified 1045.6019 0.60192568 2744 Q9NTJ5 SACM1L Phosphatidylinositide phosphatase SAC1 yes yes 0 0 0 0 0 6 0 1 53.655 53.655 2 0.0058603 15664 TMT1-5 90.263 65.368 61.5 41.19 88.482 64.434 71.088 67.261 58 44 87 65 73 65 1 1 1 1 1 1 39647 20121 2744 19878 30949 40002 40002 1 VSTLPAITLK Unmodified 1041.6434 0.64339656 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 0 9 0 1 62.984 62.984 3 0.00023519 16960 TMT1-8 104.22 54.854 333.62 467.66 339.2 316.33 412.24 426.36 315 466 354 315 422 411 2 2 2 2 2 2 58417 20122 533 19879 30950 40003;40004 40004 2 VSTLQNQR Unmodified 944.50394 0.50394296 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6 0 1 31.216 31.216 2 0.0049126 6703 TMT1-5 110.22 60.776 37.964 74.3 48.554 44.42 41.351 76.638 36 73 51 44 44 73 1 1 1 1 1 1 6222.7 20123 647 19880 30951 40005 40005 1 VSTQVLQK Unmodified 901.52328 0.52328142 2223 Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 yes no 0 0 0 0 0 7 0 1 45.616 45.616 2 0.001322 11787 TMT1-6 107.29 20.114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20124 2223 19881 30952 40006 40006 1 VSTVFWK Unmodified 865.46979 0.46978929 1754 Q14152-2;Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 0 9 0 1 61.151 61.151 2 0.044752 16275 TMT1-8 82.671 38.277 130.68 104.99 129.95 108.51 153.03 150.2 123 109 131 109 156 145 1 1 1 1 1 1 62157 20125 1754 19882 30953 40007 40007 1 VSVADHSLHLSK Unmodified 1291.6884 0.68844927 1679 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 0 7.5 0.5 1 1 41.847 41.847 4 2.0569E-19 10376 TMT1-6 187.58 151.92 315.2 497.55 343.84 368.2 428.66 426.96 298 493 362 363 440 412 2 2 2 2 2 2 31336 20126 1679 19883 30954;30955 40008;40009 40008 2 VSVFFGGLSIK Unmodified 1152.6543 0.6542956 40 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 0 9 0 1 76.347 76.347 2 1.0938E-06 22134 TMT1-8 129.89 79.849 123.04 121.35 136.93 100.79 135.05 135.79 116 124 138 102 138 131 2 2 2 2 2 2 14534 20127 40 19884 30956 40010;40011 40010 2 VSVGAPDLSLEASEGSIK Unmodified 1757.9047 0.90470922 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5 0 1 63.706 63.706 2 4.7679E-07 19397 TMT1-4 94.09 72.044 23.22 44.801 26.853 38.603 12.611 38.016 22 44 29 37 15 36 1 1 1 1 1 1 7362 20128 1632 19885 30957 40012 40012 1 VSVHVIEGDHR Unmodified 1246.6418 0.64183343 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 4 0 1 32.726 32.726 3 0.01999 7455 TMT1-3 53.211 23.402 69.065 79.682 46.688 75.547 77.613 75.603 65 80 51 73 80 73 1 1 1 1 1 1 6337.5 20129 1176 19886 30958 40013 40013 1 VSVMSYSAK Unmodified 970.47937 0.4793677 688 P13716;P13716-2 ALAD Delta-aminolevulinic acid dehydratase yes no 0 0 0 0 0 8 0 1 48.619 48.619 2 0.00018283 13037 TMT1-7 146.79 76.974 107.95 144.84 129.05 77.636 112.32 158.83 102 145 131 80 116 152 1 1 1 1 1 1 14243 20130 688 19887 30959 40014 40014 1 VSVPLLK Unmodified 754.49528 0.49527576 2536 Q9BTW9;Q9BTW9-4;Q9BTW9-2 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 0 9 0 1 59.045 59.045 2 0.040201 15331 TMT1-8 84.244 25.038 77.201 116.7 90.727 80.582 77.125 83.079 73 116 94 80 80 80 1 1 1 1 1 1 6011.5 20131 2536 19888 30960 40015 40015 1 VSVTFDPFCYLTLPLPLKK Unmodified 2237.217 0.21699899 1671 Q13107-2;Q13107 USP4 Ubiquitin carboxyl-terminal hydrolase 4 yes no 0 0 0 0 1 9 0 1 90.065 90.065 4 1.713E-05 27436 TMT1-8 63.145 46.215 23.02 66.908 41.858 36.354 26.567 61.07 22 65 44 36 29 58 1 1 1 1 1 1 3546.6 20132 1671 19889 30961 40016 40016 1 VSVYAVPDK Unmodified 976.52295 0.52294707 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 6 0 1 50.783 50.783 3 0.043136 14474 TMT1-5 46.819 27.032 68.881 79.168 78.187 73.53 85.035 75.391 65 80 80 73 87 73 1 1 1 1 1 1 6699.3 20133 2791 19890 30962 40017 40017 1 VSYDVSGFCER Unmodified 1317.566 0.56595087 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 4 0 1 51.265 51.265 2 0.033191 14772 TMT1-3 65.627 47.292 46.443 88.529 54.267 66.061 93.001 66.636 44 87 58 65 94 65 1 1 1 1 1 1 9405.2 20134 44 19891 30963 40018 40018 1 VSYDVTSAR Unmodified 996.48762 0.4876242 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 4 0 1 39.282 39.282 2 0.0024342 10037 TMT1-3 76.064 60.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20135 1708 19892 30964 40019 40019 1 VSYFEIYLDK Unmodified 1275.6387 0.63870511 998 P33176;O60282;Q12840 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 7 0 1 74.508 74.508 3 0.0015254 23131 TMT1-6 87.363 62.981 46.502 64.949 64.299 42.634 86.456 75.351 44 65 65 44 87 73 1 1 1 1 1 1 7291.4 20136 998 19893 30965 40020 40020 1 VSYFPTVPGVYIVSTK Unmodified 1755.9447 0.94472354 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 9 0 1 75.992 75.992 3 0.0001478 22026 TMT1-8 66.965 44.919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20137 270 19894 30966 40021 40021 1 VSYGIGDEEHDQEGR Unmodified 1689.7231 0.72305646 914 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 0 2 0 1 37.808 37.808 3 0.024714 10084 TMT1-1 45.458 35.877 292.4 372.98 313.61 270 399.35 498.15 276 374 323 271 410 478 1 1 1 1 1 1 19648 20138 914 19895 30967 40022 40022 1 VSYPLCFIFSSPVGCKPEQQMMYAGSK Unmodified 3110.4374 0.43739159 215;1365 O60234;P60983 GMFG;GMFB Glia maturation factor gamma;Glia maturation factor beta no no 0 0 0 0 1 9 0 1 78.323 78.323 4 4.352E-08 22912 TMT1-8 60.814 46.761 23.242 44.863 23.102 25.567 20.247 46.326 22 44 25 25 22 44 1 1 1 1 1 1 8815.4 20139 215;1365 19896 30968 40023 40023 1 VSYYENVIK Unmodified 1113.5706 0.57062555 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 6 0 2 54.936 54.936 2;3 0.0049783 16082 TMT1-5 98.249 70.628 122.42 197.33 177.3 136.65 192.26 188.53 116 196 181 138 196 182 2 2 2 2 2 2 14048 20140 1297 19897 30969;30970 40024;40025 40024 2 VTAAIASNIWAAYDR Unmodified 1620.826 0.82600539 2970 Q9Y2Q5;Q9Y2Q5-2;Q9Y2Q5-3 LAMTOR2 Ragulator complex protein LAMTOR2 yes no 0 0 0 0 0 9 0 2 71.958 71.958 2;3 1.7474E-18 20431 TMT1-8 137.81 99.786 99.76 100.12 100.3 79.715 92.87 82.63 94 102 102 80 95 80 2 2 2 2 2 2 23157 20141 2970 19898 30971;30972 40026;40027 40027 2 VTAEVVLAHLGGGSTSR Unmodified 1652.8846 0.8845829 478 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 0 8 0 1 57.198 57.198 3 4.4446E-14 16511 TMT1-7 124.96 119.39 130.05 189.6 162.87 130.13 177.65 196.4 123 189 167 131 182 189 2 2 2 2 2 2 67221 20142 478 19899 30973 40028;40029 40029 2 VTAIKSLSIEIGHEVK Unmodified 1722.988 0.98798534 131 O15155;O15155-2 BET1 BET1 homolog yes no 0 0 0 0 1 9 0 1 82.063 82.063 3 0.00096407 24350 TMT1-8 58.831 28.288 77.145 101.44 113.06 134.08 125.64 365.25 73 102 116 131 138 346 1 1 1 1 1 1 35455 20143 131 19900 30974 40030 40030 1 VTANNDKNR Unmodified 1030.5156 0.51557028 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 6 0 1 23.362 23.362 3 0.0022737 3951 TMT1-5 94.804 33.324 123.62 75.472 78.472 65.928 81.49 66.965 116 80 80 66 83 65 2 2 2 2 2 2 8992.5 20144 831 19901 30975 40031;40032 40031 2 VTAPDVDLHLK Unmodified 1206.6608 0.66083754 1632 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 0 5.5 0.5 1 1 53.578 53.578 3 0.00046607 15506 TMT1-4 93.011 41.919 260.72 455.56 338.6 232.81 437.74 495.99 247 450 349 239 445 477 2 2 2 2 2 2 52101 20145 1632 19902 30976;30977 40033;40034 40033 2 VTAQDVR Unmodified 787.41882 0.41881635 894 P26038 MSN Moesin yes yes 0 0 0 0 0 2.5 1.12 1 1 1 1 29.711 29.711 2 0.0056478 7215 TMT1-2 133.79 60.752 1161.8 1600.8 1391.3 1066.9 1393.9 1784.2 1098 1600 1424 1076 1438 1711 4 4 4 4 4 4 205360 20146 894 19903 30978;30979;30980;30981 40035;40036;40037;40038 40037 4 VTAQGPGLEPSGNIANK Unmodified 1651.8529 0.85294842 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.6 1.85 1 2 2 49.595 49.595 3;4 4.156E-30 13872 TMT1-5 170.47 147.33 2465.7 3314.5 2964.1 1998.4 2674.4 3151.5 2330 3318 3017 2036 2748 3028 6 6 6 6 6 6 779740 20147 831 19904 30982;30983;30984;30985;30986 40039;40040;40041;40042;40043;40044 40042 6 VTASDPLDTLGSEGALSPGGVASLLR Unmodified 2482.2915 0.29149716 610 P0C0L4-2;P0C0L5;P0C0L4 C4A;C4B Complement C4-A;Complement C4 beta chain;Complement C4-A alpha chain;C4a anaphylatoxin;C4b-A;C4d-A;Complement C4 gamma chain;Complement C4-B;Complement C4 beta chain;Complement C4-B alpha chain;C4a anaphylatoxin;C4b-B;C4d-B;Complement C4 gamma chain yes no 0 0 0 0 0 6 0 1 83.642 83.642 3 2.0949E-17 27368 TMT1-5 86.08 73.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20148 610 19905 30987 40045 40045 1 VTASGFPVILSAPWYLDLISYGQDWR Unmodified 2953.5014 0.50143035 539 P07686 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 0 0 0 0 0 9 0 1 105.06 105.06 3 5.2098E-09 32865 TMT1-8 69.619 53.523 0 4.1878 4.0767 0 4.184 0 0 4 4 0 4 0 0 1 1 0 1 0 1066.3 20149 539 19906 30988 40046 40046 1 VTASGPGLSSYGVPASLPVDFAIDAR Unmodified 2546.3017 0.30166791 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 0 7 0 1 79.579 79.579 3 1.4931E-05 25157 TMT1-6 61.612 47.881 15.783 36.885 21.246 5.967 22.211 15.356 15 36 22 7 22 15 1 1 1 1 1 1 3512.3 20150 270 19907 30989 40047 40047 1 VTATECIQEQSFVIR Unmodified 1779.8825 0.88253399 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 5 0 2 58.246 58.246 2;3 6.7483E-10 17239 TMT1-4 99.531 64.643 61.318 79.539 86.517 56.914 70.371 98.196 58 80 87 58 73 94 1 1 1 1 1 1 18881 20151 485 19908 30990;30991 40048;40049 40049 2 VTAVIPCFPYAR Unmodified 1392.7224 0.72239194 661;1360 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 9 0 2 66.873 66.873 2;3 5.7151E-11 18436 TMT1-8 150.53 115.65 108.29 114.49 97.585 120.41 87.827 144.6 102 116 102 117 94 138 2 2 2 2 2 2 36068 20152 661;1360 19909 30992;30993 40050;40051 40050 2 VTAVPTLLK Unmodified 940.59572 0.59571809 2513 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 0 9 0 1 60.225 60.225 2 0.0001283 15781 TMT1-8 149.82 93.694 207.7 237.4 236.36 180.19 247.29 294.62 196 240 240 182 254 283 2 2 2 2 2 2 47477 20153 2513 19910 30994 40052;40053 40052 2 VTDALNATR Unmodified 959.50361 0.50360861 638 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 0 5 0 1 41.756 41.756 2 8.3889E-20 10763 TMT1-4 192.6 120.11 762.5 1066.5 787.42 669.63 779.01 1091.7 720 1063 818 669 810 1045 1 1 1 1 1 1 178750 20154 638 19911 30995 40054 40054 1 VTDDLVCLVYK Unmodified 1323.6744 0.67443869 1182 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 0 0 7 0 1 72.926 72.926 3 0.019917 22560 TMT1-6 53.237 31.364 54.046 88.271 39.044 67.245 78.288 67.056 51 87 44 65 80 65 1 1 1 1 1 1 4124.1 20155 1182 19912 30996 40055 40055 1 VTDFGDKVEDPTFLNQLQSGVNR Unmodified 2578.2663 0.26634504 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 6 0 1 69.343 69.343 4 0.0022039 21714 TMT1-5 47.564 25.761 38.121 50.991 42.025 52.334 48.06 83.909 36 51 44 51 51 80 1 1 1 1 1 1 9861.3 20156 1763 19913 30997 40056 40056 1 VTDKLTPIHDR Unmodified 1293.7041 0.70409934 926 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 1 6 0 1 39.651 39.651 4 0.039257 10029 TMT1-5 48.513 27.141 154.28 134.66 105.53 79.754 74.232 168.44 145 138 109 80 80 160 1 1 1 1 1 1 9436.7 20157 926 19914 30998 40057 40057 1 VTDKVLNSIISSLDLLPYGLR Unmodified 2315.31 0.31004776 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 1 9 0 1 98.106 98.106 4 0.0063285 30297 TMT1-8 46.353 32.098 23.411 21.587 14.527 6.5106 14.6 23.035 22 22 15 7 15 22 1 1 1 1 1 1 1395.4 20158 1723 19915 30999 40058 40058 1 VTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLR Unmodified 3873.8102 0.81022307 1674 Q13148 TARDBP TAR DNA-binding protein 43 yes yes 0 0 0 0 0 4 0 1 88.83 88.83 4 0.0063675 29369 TMT1-3 34.749 32.89 7.3452 15.214 14.979 6.7582 0 23.452 7 15 15 7 0 22 1 1 1 1 0 1 4199.3 20159 1674 19916 31000 40059 40059 1 VTEDLFSSLK Unmodified 1137.5918 0.59175492 1314 P55160;P55160-2 NCKAP1L Nck-associated protein 1-like yes no 0 0 0 0 0 6 0 1 69.048 69.048 2 0.0045693 21633 TMT1-5 92.538 47.785 68.935 86.875 62.5 50.96 56.259 60.223 65 87 65 51 58 58 1 1 1 1 1 1 8738.3 20160 1314 19917 31001 40060 40060 1 VTEENKELANELR Unmodified 1543.7842 0.78420015 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 3.5 1.12 1 1 1 1 45.249 45.249 3 3.2825E-08 12319 TMT1-3 122.64 97.096 3218.6 4488.4 3663.5 3405.5 4155.4 4532.4 3041 4480 3790 3387 4271 4363 6 6 6 6 6 6 434780 + 20161 32;554 19918 31002;31003;31004;31005 40061;40062;40063;40064;40065;40066 40065 6 VTEFLQQK Unmodified 991.53385 0.53384611 2425 Q96JB5-2;Q96JB5;Q96JB5-4;Q96JB5-3 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 0 0 0 0 0 7 0 1 56.876 56.876 2 0.006494 16233 TMT1-6 104.44 59.356 84.667 116.06 98.728 95.297 82.972 106.36 80 116 102 94 87 102 1 1 1 1 1 1 12509 20162 2425 19919 31006 40067 40067 1 VTEGGEPYR Unmodified 1006.472 0.47197413 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 3 0 1 33.312 33.312 2 0.0010169 8653 TMT1-2 125.5 71.743 77.347 93.363 85.985 48.426 116.55 74.492 73 94 87 51 116 73 1 1 1 1 1 1 11160 20163 1792 19920 31007 40068 40068 1 VTEGLVDVILYHQPDDK Unmodified 1939.9891 0.98910755 170 O43390;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 0 5 0 2 71.679 71.679 3;4 5.2679E-08 22509 TMT1-4 102.08 84.866 76.95 131.11 120.62 118.9 95.503 166.77 73 130 124 117 102 159 2 2 2 2 2 2 17807 20164 170 19921 31008;31009 40069;40070 40070 2 VTEGSFVYK Unmodified 1028.5179 0.51786169 1217 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 0 0 6 0 1 51.445 51.445 2 1.2561E-08 14702 TMT1-5 168.27 71.774 300.19 419.83 407.5 259.95 403.64 417.01 284 420 412 267 411 402 1 1 1 1 1 1 49142 20165 1217 19922 31010 40071 40071 1 VTELEDEVR Unmodified 1088.535 0.53496832 2547 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 0 0 2 0 1 49.588 49.588 2 0.0075477 14752 TMT1-1 63.184 14.024 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20166 2547 19923 31011 40072 40072 1 VTELVQQLTGQAPAPGQR Unmodified 1892.0116 0.011574324 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 8 0 1 70.694 70.694 3 2.4544E-08 21735 TMT1-7 101.68 73.386 68.589 109.66 101.28 48.386 70.229 83.276 65 109 102 51 72 80 2 2 2 2 2 2 14621 20167 1081 19924 31012 40073;40074 40073 2 VTEQLIEAINNGDFEAYTK Unmodified 2154.0481 0.04807899 1719 Q13557;Q13557-6;Q13557-8;Q13557-11;Q13557-4;Q13557-9;Q13557-10;Q13557-5;Q13557-12;Q13557-3 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 0 0 0 0 0 5 0 1 82.663 82.663 3 0.035369 26828 TMT1-4 36.246 21.937 15.897 22.093 14.547 6.2335 29.271 22.617 15 22 15 7 29 22 1 1 1 1 1 1 1879.8 20168 1719 19925 31013 40075 40075 1 VTEYLYANK Unmodified 1099.555 0.55497548 859 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 0 6.67 0.471 1 2 55.483 55.483 2;3 0.00023952 15741 TMT1-6 144.12 99.773 269.19 355.17 263.13 263.9 302.59 338.88 254 355 275 261 312 326 3 3 3 3 3 3 32194 20169 859 19926 31014;31015;31016 40076;40077;40078 40077 3 VTFDNSGEL Unmodified 980.44509 0.44509068 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 3 0 1 62.203 62.203 2 0.0018945 20070 TMT1-2 110.81 81.469 46.745 42.96 42.123 59.976 48.259 67.913 44 44 44 58 51 65 1 1 1 1 1 1 13324 20170 333 19927 31017 40079 40079 1 VTFEIHK Unmodified 872.4756 0.47560295 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 7 0 1 47.492 47.492 3 0.039635 12521 TMT1-6 53.554 2.9225 108.39 114.77 80.644 135.98 127.17 105.1 102 116 87 131 131 102 1 1 1 1 1 1 8911 20171 1229 19928 31018 40080 40080 1 VTFEIYDPNLAFLR Unmodified 1696.8825 0.88245763 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 7 0 1 82.031 82.031 3 2.3091E-05 26072 TMT1-6 91.939 71.558 23.211 36.142 35.727 21.093 43.78 37.127 22 36 36 22 44 36 1 1 1 1 1 1 10328 20172 750 19929 31019 40081 40081 1 VTFLPTGITFK Unmodified 1222.6962 0.69616041 3046 Q9Y624 F11R Junctional adhesion molecule A yes yes 0 0 0 0 0 9 0 1 74.624 74.624 3 5.8831E-05 21464 TMT1-8 97.163 73.176 453.22 600.49 503.19 377.23 548.14 590.91 428 601 516 382 560 569 2 2 2 2 2 2 85778 20173 3046 19930 31020 40082;40083 40082 2 VTFSFEAGR Unmodified 1012.4978 0.49779495 224 O60496 DOK2 Docking protein 2 yes yes 0 0 0 0 0 7 0 1 54.75 54.75 2 0.0014665 15418 TMT1-6 119.07 79.743 115.34 144 149.76 122.98 134.55 181.64 109 145 152 123 140 174 1 1 1 1 1 1 19568 20174 224 19931 31021 40084 40084 1 VTFTPGK Unmodified 748.41194 0.41194006 3020 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 0 8 0 1 46.264 46.264 2 0.0074681 12126 TMT1-7 77.674 44.316 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20175 3020 19932 31022 40085 40085 1 VTFVNFTVTR Unmodified 1182.6397 0.63970816 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 9 0 1 62.973 62.973 2 0.0047782 16874 TMT1-8 92.428 30.228 53.741 103.61 77.185 64.828 85.985 59.374 51 102 80 65 87 58 1 1 1 1 1 1 10144 20176 1763 19933 31023 40086 40086 1 VTGCPPFDEHK Unmodified 1285.5761 0.57612163 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 41.956 41.956 3 0.00097243 10838 TMT1-4 87.001 58.674 356.2 491.26 490.77 401.25 414.47 491.32 337 492 499 401 430 472 2 2 2 2 2 2 28322 20177 471 19934 31024 40087;40088 40087 2 VTGDDSMR Unmodified 879.37563 0.37563091 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 2.5 0.5 1 1 30.863 30.863 2 0.0063932 7582 TMT1-2 105.81 71.995 115.71 113.73 112.87 117.54 134.03 143.28 109 116 116 116 138 138 2 2 2 2 2 2 40719 20178 831 19935 31025;31026 40089;40090 40090 2 VTGEPKPEITWWFEGEILQDGEDYQYIER Unmodified 3526.6569 0.65688096 1635 Q0ZGT2-4;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 NEXN Nexilin yes no 0 0 0 0 1 5 0 1 83.759 83.759 4 0.00054521 27275 TMT1-4 44.763 38.51 15.932 14.635 14.983 6.4834 14.601 23.035 15 15 15 7 15 22 1 1 1 1 1 1 3921.7 20179 1635 19936 31027 40091 40091 1 VTGESHIGGVLLK Unmodified 1308.7402 0.74015049 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5.67 3.4 1 1 1 49.968 49.968 3;4 1.4201E-11 13466 TMT1-6 145.14 98.245 2596.6 3626 3601.6 2967.3 3474.3 3783.2 2457 3629 3664 2971 3576 3642 5 5 5 5 5 5 678900 20180 2112 19937 31028;31029;31030 40092;40093;40094;40095;40096 40094 5 VTGEVLDILTR Unmodified 1214.6871 0.68705229 318 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 0 6 0 1 71.738 71.738 2 5.6218E-06 22675 TMT1-5 127.93 112.27 108.37 114.73 83.086 81.211 67.898 137.71 102 116 87 80 73 131 1 1 1 1 1 1 24140 20181 318 19938 31031 40097 40097 1 VTGPNSSSGIQAR Unmodified 1272.6422 0.64222736 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 6 0 1 33.379 33.379 2 0.01238 7581 TMT1-5 67.519 28.952 23.413 21.593 14.135 15.295 13.683 37.986 22 22 15 15 15 36 1 1 1 1 1 1 3921.6 20182 126 19939 31032 40098 40098 1 VTGQFPWSSLR Unmodified 1276.6564 0.65642086 3023 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 0 9 0 1 64.026 64.026 2 0.0032762 17319 TMT1-8 83.137 53.828 46.588 57.633 56.093 66.668 54.987 76.249 44 58 58 65 58 73 1 1 1 1 1 1 9381.8 20183 3023 19940 31033 40099 40099 1 VTGQNQEQFLLLAK Unmodified 1587.8621 0.86205654 2850 Q9UBW8 COPS7A COP9 signalosome complex subunit 7a yes yes 0 0 0 0 0 7 0 1 65.658 65.658 3 2.7177E-08 19705 TMT1-6 115.78 80.576 99.757 122.78 81.647 103.65 157.7 142.61 94 123 87 102 160 138 1 1 1 1 1 1 10829 20184 2850 19941 31034 40100 40100 1 VTGSLETK Unmodified 833.44945 0.44944778 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 41.015 41.015 2 0.0061775 10618 TMT1-5 108.74 88.188 291.67 323.28 298.12 247.48 251.18 335.02 275 327 305 247 262 321 2 2 2 2 2 2 93890 20185 833 19942 31035;31036 40101;40102 40102 2 VTGTLETK Unmodified 847.4651 0.46509784 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 5.5 0.5 1 1 41.87 41.87 2 4.9687E-05 10881 TMT1-5 160.63 74.158 722.23 1481.5 1071.9 967.01 1152 1408.4 686 1455 1116 963 1190 1352 2 2 2 2 2 2 112510 20186 1119 19943 31037;31038 40103;40104 40104 2 VTHAVVTVPAYFNDAQR Unmodified 1886.9639 0.96389585 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 0 7 0 1 52.201 52.201 3 2.3418E-07 14461 TMT1-6 94.01 75.872 91.986 107.46 138.3 92.059 129.74 89.04 87 109 138 94 131 87 1 1 1 1 1 1 144020 20187 640 19944 31039 40105 40105 1 VTIAQGGVLPNIQAVLLPK Unmodified 1930.1615 0.16153303 612;2343 Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P0C0S8;Q93077 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AG;HIST1H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-C no no 0 0 0 0 0 5 4 1 1 82.081 82.081 3 8.8628E-16 24397 TMT1-8 116.13 81.179 375.52 374.3 408.45 777.32 612.73 1677.5 354 382 432 744 675 1590 3 3 3 3 3 3 242300 20188 612;2343 19945 31040;31041 40106;40107;40108;40109 40108 4 VTIAQGYDALSSMANIAGYK Unmodified 2072.0248 0.024841127 1702 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 0 8.5 0.5 1 1 81.042 81.042 3 6.6404E-16 23883 TMT1-8 108.45 84.405 46.321 104.38 61.238 58.279 77.894 90.519 44 102 65 58 80 87 2 2 2 2 2 2 16497 20189 1702 19946 31042;31043 40110;40111 40111 2 VTILCDK Unmodified 847.44734 0.44733929 2105 Q92843-2;Q86U42-2;Q86U42;A6NDY0-2;A6NDY0;A6NDY0-4 PABPN1;PABPN1L Polyadenylate-binding protein 2;Embryonic polyadenylate-binding protein 2 yes no 0 0 0 0 0 7 0 1 51.792 51.792 2 0.018828 14201 TMT1-6 98.523 38.165 107.36 258.69 131.8 202.63 199.03 238.43 102 252 145 196 207 229 1 1 1 1 1 1 16458 20190 2105 19947 31044 40112 40112 1 VTILGHVQR Unmodified 1021.6033 0.60326308 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 8.5 0.5 1 1 39.462 39.462 3 1.4287E-06 9327 TMT1-7 160.56 51.864 291.75 405.7 395.28 287.14 333.25 359.33 276 406 401 290 343 346 2 2 2 2 2 2 44616 20191 1559 19948 31045;31046 40113;40114 40113 2 VTISGEEK Unmodified 861.44436 0.4443624 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 4 0 1 40.482 40.482 2 0.0060551 10509 TMT1-3 110.41 54.286 200.66 217.62 174.99 225.18 199.59 283.19 189 220 184 219 210 271 1 1 1 1 1 1 20572 20192 1552 19949 31047 40115 40115 1 VTLATLK Unmodified 744.47454 0.47454032 517 P06748;P06748-2;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 0 8.5 0.5 1 1 53.515 53.515 2 0.0047901 13189 TMT1-8 154.35 29.098 1262.6 2338 1501.5 1329.9 1826.3 2151.3 1196 2301 1578 1330 1875 2067 3 3 3 3 3 3 262540 20193 517 19950 31048;31049 40116;40117;40118 40118 3 VTLAVSDLQK Unmodified 1072.6128 0.61282471 2688 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 0 7 0 1 57.846 57.846 3 0.00023642 16654 TMT1-6 103.26 74.857 123.13 144.25 103.38 118.53 111.5 127.94 116 145 109 116 116 123 1 1 1 1 1 1 24279 20194 2688 19951 31050 40119 40119 1 VTLDPVQLESSLLR Unmodified 1568.8774 0.87737225 2935 Q9UPN3;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 0 6 0 1 77.367 77.367 2 0.016179 24921 TMT1-5 63.662 25.37 30.814 35.883 20.516 22.001 43.738 37.128 29 36 22 22 44 36 1 1 1 1 1 1 4679.8 20195 2935 19952 31051 40120 40120 1 VTLDWAKPK Unmodified 1056.5968 0.59678072 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 9 0 1 54.131 54.131 3 0.027518 13486 TMT1-8 50.297 24.738 153.21 213.73 217.4 158.18 257.13 250.63 145 214 220 161 261 242 1 1 1 1 1 1 26720 20196 786 19953 31052 40121 40121 1 VTLGTQPTVLR Unmodified 1183.6925 0.69247202 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 8 0 1 50.744 50.744 2 0.0020687 13896 TMT1-7 94.804 40.368 130.58 136.04 119.03 117.46 118.88 127.73 123 138 123 116 123 123 1 1 1 1 1 1 13110 20197 1888 19954 31053 40122 40122 1 VTLLDLMIAK Unmodified 1115.6624 0.66241744 2834 Q9UBB4-2;Q9UBB4 ATXN10 Ataxin-10 yes no 0 0 0 0 0 9 0 1 83.748 83.748 2 0.0062821 25049 TMT1-8 88.496 29.515 69.083 94.841 30.901 45.178 57.038 45.276 65 94 36 44 58 44 1 1 1 1 1 1 3734.1 20198 2834 19955 31054 40123 40123 1 VTLLEGDHVR Unmodified 1137.6142 0.6142217 287 O75534-2;O75534;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 0 4 0 1 43.245 43.245 3 0.00057016 11605 TMT1-3 67.93 40.188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20199 287 19956 31055 40124 40124 1 VTLLHHVLEEAEK Unmodified 1516.8249 0.82494275 1916 Q27J81;Q27J81-2 INF2 Inverted formin-2 yes no 0 0 0 0 0 6 0 2 57.199 57.199 3;4 6.448E-05 17021 TMT1-5 94.538 49.281 176.29 285.11 245.99 243.33 230.02 286.59 167 283 254 240 240 275 2 2 2 2 2 2 42073 20200 1916 19957 31056;31057 40125;40126 40126 2 VTLLLFK Unmodified 832.54223 0.54222595 2994 Q9Y3C4-3;Q9Y3C4 TPRKB EKC/KEOPS complex subunit TPRKB yes no 0 0 0 0 0 9 0 1 74.232 74.232 2 0.013602 21313 TMT1-8 108.09 47.935 77.064 155.17 81.167 73.377 83.723 113.8 73 152 87 73 87 109 1 1 1 1 1 1 9824.6 20201 2994 19958 31058 40127 40127 1 VTLLNAPTK Unmodified 955.57023 0.57023162 2251 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 0 9 0 1 53.09 53.09 2 0.031021 12989 TMT1-8 68.847 1.1429 139.01 197.62 92.858 111.09 133.81 158.21 131 196 102 109 138 152 1 1 1 1 1 1 18684 20202 2251 19959 31059 40128 40128 1 VTLPDGK Unmodified 728.40685 0.40685468 902 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 6 0 1 46.52 46.52 2 0.0084318 12770 TMT1-5 76.035 13.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20203 902 19960 31060 40129 40129 1 VTLPQADFYHWDVVPDDVIPIK Unmodified 2566.3108 0.31077604 3068 yes yes 0 0 0 0 0 9 0 1 93.805 93.805 4 0.047642 28945 TMT1-8 22.636 8.7645 15.89 14.517 22.212 14.39 36.225 22.418 15 15 22 15 36 22 1 1 1 1 1 1 5948.7 + 20204 3068 19961 31061 40130 40130 1 VTLSALDTSESSFTPLVVIELAQDVKEETK Unmodified 3248.6915 0.69153513 2765 Q9NW15-2;Q9NW15;Q9NW15-3;Q9NW15-5;Q9NW15-4 ANO10 Anoctamin-10 yes no 0 0 0 0 1 6 0 1 96.069 96.069 5 0.00013071 31836 TMT1-5 50.857 41.476 7.3447 6.5786 22.378 22.309 21.459 15.378 7 7 22 22 22 15 1 1 1 1 1 1 1348 20205 2765 19962 31062 40131 40131 1 VTLSEGPHHVALFK Unmodified 1533.8304 0.83036248 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 8 0 1 48.092 48.092 4 2.5019E-08 12866 TMT1-7 115.57 90.721 232.49 292.14 171.74 242.69 266.99 337.77 219 292 186 236 277 324 1 1 1 1 1 1 14588 20206 220 19963 31063 40132 40132 1 VTLSFPSTLQTGTGTLK Unmodified 1749.9513 0.95126548 1324 P55786;P55786-2;A6NEC2;A6NEC2-3 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 9 0 1 68.774 68.774 3 1.226E-40 19157 TMT1-8 178.85 151.44 60.881 102.07 140.85 45.73 86.057 82.824 58 102 138 51 87 80 1 1 1 1 1 1 16363 20207 1324 19964 31064 40133 40133 1 VTLTSEEEAR Unmodified 1133.5564 0.55643205 385 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 0 2 0.816 1 1 1 39.019 39.019 2 3.4478E-79 10622 TMT1-1 262.83 157.02 2528.4 3587 2833.9 2798 3109.8 3687 2389 3576 2945 2768 3217 3542 4 4 4 4 4 4 645870 20208 385 19965 31065;31066;31067 40134;40135;40136;40137 40135 4 VTLVVGASQDIIPQLK Unmodified 1679.9822 0.98217168 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 0 8 0 2 76.344 76.344 3;4 9.0567E-07 23970 TMT1-7 97.836 75.963 92.01 91.338 147.98 90.832 164.3 180.8 87 94 146 94 167 174 2 2 2 2 2 2 16737 20209 837 19966 31068;31069 40138;40139 40138 2 VTMLFLGLHNVR Unmodified 1398.7806 0.78057552 714 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 9 0 1 65.551 65.551 3 1.4499E-07 17926 TMT1-8 117.94 86.306 77.369 109.62 68.37 81.925 76.55 98.02 73 109 73 80 80 94 1 1 1 1 1 1 15882 20210 714 19967 31070 40140 40140 1 VTNEFVHINNLK Unmodified 1426.7569 0.75686319 86 O00743-2;O00743;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 0 7 0 1 53.04 53.04 3 0.013651 14694 TMT1-6 54.871 38.443 240.17 330.04 292.46 201.19 289.26 354.19 227 330 298 205 297 340 1 1 1 1 1 1 23625 20211 86 19968 31071 40141 40141 1 VTNIFPK Unmodified 817.46979 0.46978929 2248 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 0 9 0 1 55.442 55.442 2 0.02947 13905 TMT1-8 89.752 44.417 153.76 196.91 139.54 106.87 209.91 201.88 145 197 145 109 212 195 1 1 1 1 1 1 15294 20212 2248 19969 31072 40142 40142 1 VTNLLMLK Unmodified 930.55722 0.55722409 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 no no 0 0 0 0 0 9 0 1 68.053 68.053 2 0.0017123 18922 TMT1-8 139.19 0 482.67 913.19 518.53 337.25 591.27 759.18 457 897 546 347 605 728 1 1 1 1 1 1 64402 20213 901 19970 31073 40143 40143 1 VTNVEWLLDALYGK Unmodified 1619.8559 0.85590853 2914 Q9ULZ3;Q9ULZ3-2;Q9ULZ3-3 PYCARD Apoptosis-associated speck-like protein containing a CARD yes no 0 0 0 0 0 8 0 1 93.313 93.313 3 2.677E-07 30297 TMT1-7 105.14 75.809 68.479 148.21 87.122 120.08 80.769 137.34 65 145 94 116 87 131 1 1 1 1 1 1 19158 20214 2914 19971 31074 40144 40144 1 VTPDIEESLLEPENEK Unmodified 1840.8942 0.89420411 1753 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 0 0 2.5 0.5 1 1 67.931 67.931 3 2.7508E-23 22225 TMT1-2 136.17 102.86 15.864 29.557 13.719 14.754 43.778 45.655 15 29 15 15 44 44 1 1 1 1 1 1 3367.9 20215 1753 19972 31075;31076 40145;40146 40146 2 VTPDTDWAR Unmodified 1059.4985 0.49852324 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 4 0 1 46.33 46.33 2 1.0073E-05 12840 TMT1-3 158.07 111.7 176.57 286.98 197 174.73 197.43 352.54 167 284 206 174 208 336 1 1 1 1 1 1 38938 20216 1283 19973 31077 40147 40147 1 VTPPAVTGSPEFER Unmodified 1485.7464 0.74635808 2489 Q99735-2;Q99735 MGST2 Microsomal glutathione S-transferase 2 yes no 0 0 0 0 0 5 0 1 50.897 50.897 2 6.1734E-12 14360 TMT1-4 115.65 80.029 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20217 2489 19974 31078 40148 40148 1 VTPPEGYEVVTVFPK Unmodified 1660.8712 0.87122424 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6 0 2 68.659 68.659 2;4 0.0004059 21465 TMT1-5 83.137 57.751 442.73 395.55 457.18 375.76 365.01 534.31 417 407 462 375 383 511 3 3 3 3 3 3 117200 20218 41 19975 31079;31080 40149;40150;40151 40149 3 VTPQSLFILFGVYGDVQR Unmodified 2038.0888 0.088762013 901 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 0 9 0 1 93.291 93.291 3 3.3962E-27 28582 TMT1-8 144.5 117.53 78.707 70.345 57.16 21.97 73.041 67.206 74 72 58 22 73 65 2 2 2 1 2 2 26622 20219 901 19976 31081 40152;40153 40152 2 VTPVDYLLGVADLTGELMR Unmodified 2061.0816 0.081627724 2475 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 0 7.5 0.5 1 1 104.5 104.5 3 2.4799E-07 33507 TMT1-7 89.846 62.35 12.695 16.245 16.733 13.972 17.691 14.419 12 16 17 14 18 14 4 3 4 4 4 4 3716.5 20220 2475 19977 31082;31083 40154;40155;40156;40157 40156 4 VTQAIQSFCLEK Unmodified 1422.7177 0.71770049 1210 P49959-2;P49959;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 0 8 0 1 64.335 64.335 3 0.012927 19318 TMT1-7 55.724 24.496 61.325 118.41 52.374 66.623 69.119 121.68 58 116 58 65 73 116 1 1 1 1 1 1 9228.9 20221 1210 19978 31084 40158 40158 1 VTQDELK Unmodified 831.4338 0.43379771 786 P19338 NCL Nucleolin yes yes 0 0 0 0 0 4 0 1 40.875 40.875 2 0.0081957 10687 TMT1-3 118.74 27.678 386.51 597.88 355.71 322.87 650.91 503.77 365 592 377 326 653 490 2 2 2 2 2 2 34765 20222 786 19979 31085 40159;40160 40160 2 VTQDELKEVFEDAAEIR Unmodified 1990.9848 0.98475045 786 P19338 NCL Nucleolin yes yes 0 0 0 0 1 4.5 0.5 1 1 75.65 75.65 3 4.6418E-19 24352 TMT1-3 139.12 104.74 367.88 538.48 292.3 346.75 395.99 523.83 347 534 316 340 411 502 2 2 2 2 2 2 85341 20223 786 19980 31086;31087 40161;40162;40163 40162 3 VTQGLVAGETAQQICEDLR Unmodified 2087.0317 0.031717419 852 P22749-2;P22749 GNLY Granulysin yes no 0 0 0 0 0 4 0 1 64.564 64.564 3 8.4937E-06 19969 TMT1-3 77.681 67.893 46.315 95.728 69.685 74.623 53.852 98.667 44 94 73 73 58 94 1 1 1 1 1 1 19946 20224 852 19981 31088 40164 40164 1 VTQILQSPAFR Unmodified 1258.7034 0.70337105 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 0 9 0 1 60.687 60.687 2 6.9524E-06 16018 TMT1-8 113.46 78.164 85.281 62.728 40.758 59.624 71.309 67.255 80 65 44 58 73 65 1 1 1 1 1 1 7772.9 20225 2854 19982 31089 40165 40165 1 VTQILQSPAFREDLECLIQEQMK Unmodified 2775.3935 0.39353616 2854 Q9UEY8-2;Q9UEY8 ADD3 Gamma-adducin yes no 0 0 0 0 1 7 0 1 85.387 85.387 4 0.0018015 27371 TMT1-6 48.872 33.172 15.777 29.315 28.562 21.954 20.706 37.785 15 29 29 22 22 36 1 1 1 1 1 1 3766.8 20226 2854 19983 31090 40166 40166 1 VTQLASYFEPLILAAVGVASK Unmodified 2176.2144 0.21435646 3014 Q9Y4G6 TLN2 Talin-2 yes yes 0 0 0 0 0 9 0 1 110.45 110.45 3 8.8852E-06 34255 TMT1-8 61.345 42.021 8.5494 6.8715 0 7.651 0 7.462 8 7 0 7 0 7 1 1 0 1 0 1 869.01 20227 3014 19984 31091 40167 40167 1 VTQLDPKEEEVSLQGINTR Unmodified 2155.1121 0.11207623 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 1 4.5 0.5 1 1 56.783 56.783 3 0.00022026 16984 TMT1-3 65.467 50.539 84.783 132.58 65.213 96.735 112.76 120.44 80 131 72 94 116 116 2 2 2 2 2 2 19418 20228 3064 19985 31092;31093 40168;40169 40168 2 VTQQVNPIFSEAC Unmodified 1491.7028 0.70277871 2832 Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR2 GMP reductase 2 yes no 0 0 0 0 0 5 0 1 65.593 65.593 2 0.016839 20097 TMT1-4 65.574 36.831 23.029 75.567 33.014 28.918 43.127 45.673 22 73 36 29 44 44 1 1 1 1 1 1 8178.1 20229 2832 19986 31094 40170 40170 1 VTQSDLYK Unmodified 952.48656 0.48656157 172 O43399;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 0 0 0 5 0 1 44.437 44.437 3 0.0082496 11789 TMT1-4 76.679 33.652 108.35 114.65 87.554 151.05 118.1 105.36 102 116 94 145 123 102 1 1 1 1 1 1 7208.4 20230 172 19987 31095 40171 40171 1 VTQSDLYKK Unmodified 1080.5815 0.58152458 172 O43399;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 0 0 1 7 0 1 41.958 41.958 3 0.0046759 10365 TMT1-6 82.171 49.896 222.92 287.65 160.62 208.03 227.13 296.26 210 287 174 203 236 284 1 1 1 1 1 1 18072 20231 172 19988 31096 40172 40172 1 VTQSNFAVGYK Unmodified 1212.6139 0.61388734 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 7.67 0.471 1 2 50.889 50.889 2;3 2.7517E-23 13924 TMT1-7 196.88 145.53 363.23 574.49 321.48 420.96 367.86 573.67 343 568 348 409 389 548 3 3 3 3 3 3 127730 20232 833 19989 31097;31098;31099 40173;40174;40175 40174 3 VTQTLIPYYISVK Unmodified 1523.8599 0.85993128 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 9 0 2 72.405 72.405 3;4 1.4243E-09 20572 TMT1-8 115.69 89.093 633.06 657.12 527.35 467.1 516.69 777.29 596 666 546 465 540 743 4 4 4 4 4 4 179110 20233 1684 19990 31100;31101 40176;40177;40178;40179 40176 4 VTQVDGHSSK Unmodified 1056.52 0.51998696 168 O43324;O43324-2 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes no 0 0 0 0 0 5 0 1 29.063 29.063 3 0.0031046 5733 TMT1-4 54.471 31.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20234 168 19991 31102 40180 40180 1 VTSAHKGPDETLR Unmodified 1409.7263 0.72629134 843 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 1 5 0 1 30.852 30.852 4 0.00018789 6393 TMT1-4 89.747 71.334 108.12 137.78 105.58 79.608 81.861 159.7 102 138 109 80 87 152 1 1 1 1 1 1 9166.3 20235 843 19992 31103 40181 40181 1 VTSAVEALLSADSASR Unmodified 1575.8104 0.8104149 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 73.426 73.426 3 1.5797E-05 22717 TMT1-6 86.873 61.155 38.409 28.049 13.013 30.101 43.622 29.669 36 29 15 29 44 29 1 1 1 1 1 1 7747.9 20236 1122 19993 31104 40182 40182 1 VTSGSTTTTR Unmodified 1009.504 0.50400254 437 P02671;P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 0 5.4 2.87 1 1 1 1 1 23.463 23.463 2 2.4998E-06 3874 TMT1-4 158.57 131.08 190.88 116.33 100.21 122.5 143.09 116.37 179 123 105 120 146 113 7 7 7 7 7 7 21479 20237 437 19994 31105;31106;31107;31108;31109 40183;40184;40185;40186;40187;40188;40189 40186 7 VTSNLGK Unmodified 717.4021 0.40210366 1623 Q08495-4;Q08495;Q08495-3;Q08495-2 DMTN Dematin yes no 0 0 0 0 0 7 0 1 39.394 39.394 2 0.0079148 9327 TMT1-6 122.13 34.099 309.94 185.95 228.64 217 231.98 234.3 291 198 232 215 239 226 1 1 1 1 1 1 22046 20238 1623 19995 31110 40190 40190 1 VTSTLTIK Unmodified 861.51713 0.51713341 423 P0DOX6;P01871;P01871-2 IGHM Ig mu chain C region yes no 0 0 0 0 0 8 0 1 49.931 49.931 2 0.00096833 13578 TMT1-7 98.629 42.953 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20239 423 19996 31111 40191 40191 1 VTSVVVDVVPR Unmodified 1168.6816 0.68157298 692 P13798 APEH Acylamino-acid-releasing enzyme yes yes 0 0 0 0 0 6 0 1 58.882 58.882 2 0.015049 17604 TMT1-5 75.197 48.595 169.57 239.26 151.73 138.73 162.6 196.83 160 238 160 138 168 189 1 1 1 1 1 1 20181 20240 692 19997 31112 40192 40192 1 VTTEQYQK Unmodified 995.49238 0.49237523 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 0 5 0 1 37.112 37.112 2 5.3569E-05 8900 TMT1-4 160.11 94.854 99.118 199.79 123.75 123.52 188.21 110.82 94 196 131 123 189 109 1 1 1 1 1 1 12936 20241 2775 19998 31113 40193 40193 1 VTTHPLAK Unmodified 865.50215 0.50215205 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 7.5 0.5 1 1 34.377 34.377 3 0.0012226 7341 TMT1-7 107.01 33.077 4054.6 5807.5 4508.8 3667 4773.2 5471 3831 5786 4659 3683 4904 5260 4 4 4 4 4 4 460940 20242 2468 19999 31114;31115 40194;40195;40196;40197 40196 4 VTTMDAELEFAIQPNTTGK Oxidation (M) 2080.9987 0.99868596 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-3 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 1 0 0 5 0 1 64.438 64.438 4 4.9737E-10 19639 TMT1-4 100.58 76.039 53.734 126.26 59.151 74.808 77.391 83.072 51 123 65 73 80 80 1 1 1 1 1 1 14747 20243 894;720;1015 20000 31116 40198 40198 135 1 VTTMDAELEFAIQPNTTGK Unmodified 2065.0038 0.003771334 894;720;1015 P26038;P15311;P35241;P35241-5;P35241-3 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 0 0 0 0 0 5.33 0.471 2 1 71.328 71.328 3;4 8.4436E-31 22354 TMT1-4 149.19 129.37 469.77 829.82 593.61 538.62 688.2 804.38 445 819 619 537 708 773 6 6 6 6 6 6 105870 20244 894;720;1015 20000 31117;31118;31119 40199;40200;40201;40202;40203;40204 40201 6 VTTQTSLPLFR Unmodified 1261.703 0.7030367 1726 Q13596-2;Q13596;Q13596-3 SNX1 Sorting nexin-1 yes no 0 0 0 0 0 9 0 1 60.061 60.061 2 0.00017872 15761 TMT1-8 103.69 62.699 37.927 81.752 48.497 35.667 42.047 68.09 36 80 51 36 44 65 1 1 1 1 1 1 6329.4 20245 1726 20001 31120 40205 40205 1 VTTSITSK Unmodified 835.4651 0.46509784 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 7 0 1 41.558 41.558 2 2.4841E-05 10163 TMT1-6 163.99 50.486 434.59 353.32 597.6 414.63 177.82 694.22 410 369 591 415 211 656 1 1 1 1 1 1 51223 20246 126 20002 31121 40206 40206 1 VTTVASHTSDSDVPSGVTEVVVK Unmodified 2313.17 0.16998504 639 P10909-4;P10909-6;P10909;P10909-5;P10909-2;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 0 6 0 1 53.05 53.05 4 5.021E-29 15373 TMT1-5 130.56 108.12 115.67 129.82 105.76 85.52 173.74 126.16 109 131 109 87 174 123 1 1 1 1 1 1 18052 20247 639 20003 31122 40207 40207 1 VTTVSDLTK Unmodified 962.52843 0.52842638 1500 Q5TFQ8;P78324-4;P78324;P78324-2;Q9P1W8-3;Q9P1W8-4;Q9P1W8-2;Q9P1W8 SIRPB1;SIRPA;SIRPG Signal-regulatory protein beta-1 isoform 3;Tyrosine-protein phosphatase non-receptor type substrate 1;Signal-regulatory protein gamma yes no 0 0 0 0 0 6 0 1 48.846 48.846 2 0.016869 13715 TMT1-5 79.489 38.041 84.541 123.27 113.83 86.615 89.93 128.55 80 123 116 87 94 123 1 1 1 1 1 1 9276.9 20248 1500 20004 31123 40208 40208 1 VTTVTEIGK Unmodified 946.53351 0.53351176 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 6 0 1 48.239 48.239 2 0.003637 13452 TMT1-5 70.028 14.312 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20249 1287 20005 31124 40209 40209 1 VTTVTEIGKDVIGLR Unmodified 1599.9196 0.91957142 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 1 8 0 1 66.382 66.382 3 2.6954E-10 20046 TMT1-7 119.17 92.07 249.47 274.24 219.07 174.01 165.49 339.6 235 277 226 174 177 323 1 1 1 1 1 1 33546 20250 1287 20006 31125 40210 40210 1 VTVAGLAGK Unmodified 814.49125 0.49125301 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 0 8 0 1 51.009 51.009 2 0.0003087 13966 TMT1-7 141.39 38.675 517.64 778.96 705.62 491.93 897.91 669.41 490 776 718 504 902 652 2 2 2 2 2 2 99143 20251 2468 20007 31126 40211;40212 40211 2 VTVAGLAGKDPVQCSR Unmodified 1656.8617 0.86173896 2468 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 1 8 0 1 49.295 49.295 3 8.0584E-16 13378 TMT1-7 136.1 117.5 772.76 1183.5 1126.7 789.12 905.94 1225.6 732 1179 1143 799 941 1174 2 2 2 2 2 2 208640 20252 2468 20008 31127 40213;40214 40214 2 VTVFPIGIGDR Unmodified 1172.6554 0.65535823 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 1 66.319 66.319 2 1.7765E-08 20017 TMT1-7 160.53 102.67 240.22 402.67 402.9 247.36 215.9 418.11 228 400 406 252 231 398 1 1 1 1 1 1 88677 20253 471 20009 31128 40215 40215 1 VTVFPSK Unmodified 776.44324 0.44324019 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 1 51.26 51.26 2 0.02947 12253 TMT1-8 89.752 17.519 160.65 161.21 273.76 225.85 199.87 243.74 152 166 272 225 209 234 1 1 1 1 1 1 44392 20254 856 20010 31129 40216 40216 1 VTVLFAGQHIAK Unmodified 1282.7398 0.73975656 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 5 4 1 1 55.492 55.492 3 1.1178E-18 13719 TMT1-8 184.03 136.73 5537.2 7727.1 7431.9 5345.5 7208 8565.4 5238 7730 7543 5420 7407 8228 6 6 6 6 6 6 1209100 20255 831 20011 31130;31131 40217;40218;40219;40220;40221;40222 40220 6 VTVLGHVQR Unmodified 1007.5876 0.58761301 765;560 P17858;P17858-2;P08237-3;P08237 PFKL;PFKM ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, muscle type no no 0 0 0 0 0 8 0 1 35.709 35.709 3 0.00064339 7990 TMT1-7 101.9 74.371 99.464 153.26 105.11 70.392 166.56 142.36 94 152 109 73 167 138 1 1 1 1 1 1 20857 20256 765;560 20012 31132 40223 40223 1 VTVLGQPK Unmodified 840.5069 0.50690308 22 P0DOX8;B9A064 IGLL5 Immunoglobulin lambda-like polypeptide 5 yes no 0 0 0 0 0 8 0 1 46.946 46.946 2 0.0064109 12358 TMT1-7 105.57 68.547 199.77 400.97 349.21 269.33 264.28 289.87 190 395 357 270 274 279 1 1 1 1 1 1 56319 20257 22 20013 31133 40224 40224 1 VTVLTLQDK Unmodified 1015.5914 0.59136099 2847 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 0 7 0 1 57.193 57.193 2 0.04566 16441 TMT1-6 67.726 45.595 107.62 198.97 138.5 132.73 117.11 158.69 102 196 145 131 123 152 1 1 1 1 1 1 15794 20258 2847 20014 31134 40225 40225 1 VTVNTNMVDLNDYLQHILK Unmodified 2229.1464 0.14635325 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 8 0 2 80.745 80.745 3;4 0.0007759 25626 TMT1-7 53.773 45.485 53.865 96.404 62.441 65.446 99.809 82.432 51 95 66 65 101 80 2 2 2 2 2 2 12934 20259 1286 20015 31135;31136 40226;40227 40226 2 VTVSPYTEIHLK Unmodified 1385.7555 0.7554662 1690 Q13287 NMI N-myc-interactor yes yes 0 0 0 0 0 7 0 1 54.461 54.461 3 0.018476 15339 TMT1-6 52.555 14.534 53.912 87.899 61.861 65.624 92.215 90.111 51 87 65 65 94 87 1 1 1 1 1 1 14068 20260 1690 20016 31137 40228 40228 1 VTVVCEPEDYVVVSTEMQSSESK Unmodified 2601.1826 0.18259992 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 4 0 1 68.818 68.818 4 9.3725E-05 21659 TMT1-3 58.457 48.057 30.489 66.277 49.459 35.753 34.437 45.921 29 65 51 36 36 44 1 1 1 1 1 1 5558.2 20261 981 20017 31138 40229 40229 1 VTVVFSTVFK Unmodified 1125.6434 0.64339656 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 9 0 1 73.625 73.625 2 0.0073504 21103 TMT1-8 73.499 20.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20262 129 20018 31139 40230 40230 1 VTVVFSTVFKDDDDVVIGK Unmodified 2082.0885 0.088487241 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 7.5 0.5 2 2 76.997 76.997 3;4 4.111E-13 23952 TMT1-7 110.74 86.725 237.7 333.6 343.81 282.73 324.17 355.32 225 334 349 283 334 342 5 5 5 5 5 5 23112 20263 129 20019 31140;31141;31142;31143 40231;40232;40233;40234;40235;40236 40236 6 VTVYPSK Unmodified 792.43815 0.43815481 467;802 Q29974;P04229;Q30167;Q30134;Q9GIY3;P13762;P20039;Q95IE3;Q5Y7A7;P01911;P01912 HLA-DRB1;HLA-DRB4 HLA class II histocompatibility antigen, DRB1-16 beta chain;HLA class II histocompatibility antigen, DRB1-1 beta chain;HLA class II histocompatibility antigen, DRB1-10 beta chain;HLA class II histocompatibility antigen, DRB1-8 beta chain;HLA class II histocompatibility antigen, DRB1-14 beta chain;HLA class II histocompatibility antigen, DR beta 4 chain;HLA class II histocompatibility antigen, DRB1-11 beta chain;HLA class II histocompatibility antigen, DRB1-12 beta chain;HLA class II histocompatibility antigen, DRB1-13 beta chain;HLA class II histocompatibility antigen, DRB1-15 beta chain;HLA class II histocompatibility antigen, DRB1-3 chain no no 0 0 0 0 0 7 0 1 43.926 43.926 2 0.019116 11064 TMT1-6 98.299 49.796 107.35 253.27 137.73 76.859 126.11 214.93 102 247 145 80 131 205 1 1 1 1 1 1 14690 20264 467;802 20020 31144 40237 40237 1 VTWAPPPSIDLTNFLVR Unmodified 1925.0411 0.041083539 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-4 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 9 0 1 86.697 86.697 3 2.0141E-08 26236 TMT1-8 85.988 65.892 53.916 56.612 87.592 64.502 70.295 59.822 51 58 87 65 72 58 2 2 2 2 2 2 14618 20265 442 20021 31145 40238;40239 40239 2 VTWDSSFCAVNPR Unmodified 1537.6984 0.69836203 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 7.5 0.5 1 1 59.1 59.1 3 4.0918E-14 17127 TMT1-6 166.04 144.28 223.23 281.14 294.52 222.77 297.96 315.56 211 283 298 225 305 304 3 3 3 3 3 3 95481 20266 2913 20022 31146;31147 40240;40241;40242 40241 3 VTYCPTEPGNYIINIK Unmodified 1880.9342 0.93423521 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7 0 2 66.868 66.868 2 1.8134E-17 20162 TMT1-6 144.7 120.35 91.936 131.07 126.77 149.16 94.075 167.88 87 131 131 145 102 160 1 1 1 1 1 1 58579 20267 831 20023 31148;31149 40243;40244 40243 2 VTYDSDATSSACR Unmodified 1431.5936 0.59362219 137 O15243 LEPROT Leptin receptor gene-related protein yes yes 0 0 0 0 0 3 0 1 35.66 35.66 2 2.0893E-05 9585 TMT1-2 88.596 51.252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20268 137 20024 31150 40245 40245 1 VTYTPMAPGSYLISIK Oxidation (M) 1755.9117 0.91170885 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 8 0 1 68.591 68.591 3 0.00188 20989 TMT1-7 67.605 42.551 115.55 168.33 94.007 127.4 134.38 119.82 109 167 102 124 138 116 2 2 2 2 2 2 21022 20269 831 20025 31151 40246;40247 40247 161 2 VTYTPMAPGSYLISIK Unmodified 1739.9168 0.91679423 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 9 0 3 73.173 73.173 2;3;4 4.2031E-20 20945 TMT1-8 142.55 111.32 1117.2 1522 1381.3 1113 1300.9 1780.4 1056 1523 1412 1116 1351 1705 4 4 4 4 4 4 446010 20270 831 20025 31152;31153;31154 40248;40249;40250;40251 40249 4 VVACNLYPFVK Unmodified 1308.69 0.69002918 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 9 0 1 66.867 66.867 2 5.3266E-08 18437 TMT1-8 138.1 92.146 153.73 195.73 146.18 153.6 203.5 264.96 145 196 153 152 210 254 2 2 2 2 2 2 13539 20271 981 20026 31155 40252;40253 40252 2 VVACTSAFLLWDPTK Unmodified 1706.8702 0.87017839 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 9 0 1 79.784 79.784 3 3.1683E-11 23501 TMT1-8 116.19 85.75 77.373 109.63 67.691 97.143 83.18 97.83 73 109 73 94 87 94 1 1 1 1 1 1 17017 20272 946 20027 31156 40254 40254 1 VVADGAGLPGEDWVFVSSK Unmodified 1931.9629 0.9628928 1732 Q13630 TSTA3 GDP-L-fucose synthase yes yes 0 0 0 0 0 6 0 2 75.876 75.876 3;4 3.1224E-13 24320 TMT1-5 108.49 97.227 138.82 189.53 131.67 125.06 139.64 213.48 131 189 138 124 146 204 2 2 2 2 2 2 18277 20273 1732 20028 31157;31158 40255;40256 40255 2 VVAELQAGTCFINNYNVSPVELPFGGYK Unmodified 3085.5219 0.5219078 1171 P49189;P49189-3;P49189-2 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 0 8 0 1 87.574 87.574 4 1.1105E-11 28189 TMT1-7 80.847 73.182 47.035 35.132 0 23.526 27.67 46.114 44 36 0 22 29 44 1 1 0 1 1 1 6583.9 20274 1171 20029 31159 40257 40257 1 VVAEPVELAQEFR Unmodified 1485.7827 0.78274359 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 0 4 0 2 66.048 66.048 2;3 3.2882E-06 20583 TMT1-3 112.02 97.604 153.69 172.97 171.33 129.76 170.65 157.16 145 175 174 131 174 152 3 3 3 3 3 3 25022 20275 281 20030 31160;31161 40258;40259;40260 40259 3 VVAGVANALAHK Unmodified 1148.6666 0.66659162 1497;428 P02042;P68871 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 0 7.5 2.93 1 1 4 53.181 53.181 2;3 6.0683E-30 12755 TMT1-8 198.65 152.29 2044.3 1710.3 1402.7 1316.8 565 1188.5 1921 1759 1455 1291 637 1130 5 5 5 5 5 5 370920 20276 428;1497 20031 31162;31163;31164;31165;31166;31167 40261;40262;40263;40264;40265;40266;40267;40268 40265 8 VVAGVANALAHKYH Unmodified 1448.7888 0.78883202 1497;428 P02042;P68871 HBD;HBB Hemoglobin subunit delta;Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin no no 0 0 0 0 1 9 0 1 53.078 53.078 4 2.5066E-06 12968 TMT1-8 98.156 77.718 528.99 445.91 342.69 293.73 149.73 333.65 497 458 356 290 167 317 2 2 2 2 2 2 45788 20277 428;1497 20032 31168 40269;40270 40269 2 VVAGVANALAHRYH Unmodified 1476.795 0.79498003 25 CON__P02070 yes yes 0 0 0 0 1 8 0 1 58.73 58.73 3 0.00143 17051 TMT1-7 59.155 45.346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20278 25 20033 31169 40271 40271 1 VVAIYDYTK Unmodified 1070.5648 0.56481189 2158 Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q8IZP0-11;Q9NYB9-2;Q9NYB9-4;Q9NYB9;Q9NYB9-3 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 0 0 0 0 0 7 0 1 58.572 58.572 2 0.001452 16881 TMT1-6 119.27 104.12 207.86 222.72 222.78 164.75 239.4 240.48 196 226 226 167 244 232 1 1 1 1 1 1 29661 20279 2158 20034 31170 40272 40272 1 VVALIGVATAADTLVTK Unmodified 1640.9713 0.97127264 2749 Q9NUJ1;Q9NUJ1-2;Q9NUJ1-3 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 0 9 0 1 84.785 84.785 3 2.0902E-10 25378 TMT1-8 100.23 76.623 92.965 107.12 154.5 93.207 75.482 114.04 88 109 153 95 80 109 2 2 2 2 2 2 16251 20280 2749 20035 31171 40273;40274 40273 2 VVAPTISSPVCQEQLVEAGR Unmodified 2139.0994 0.099403054 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 5.43 2.06 1 2 2 1 1 60.593 60.593 3;4 5.8067E-62 18092 TMT1-4 216.34 210.42 987.07 1237.1 1131 910.67 1170.4 1311.9 932 1243 1156 915 1202 1262 10 10 10 10 10 10 986600 20281 3010 20036 31172;31173;31174;31175;31176;31177;31178 40275;40276;40277;40278;40279;40280;40281;40282;40283;40284 40277 10 VVAVGYINEAIDEGNPLR Unmodified 1928.0003 0.0003409361 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 5 0 2 73.972 73.972 2;3 3.5662E-25 23411 TMT1-4 150.39 129.95 84.548 131.92 105.36 95.148 128.02 134.93 80 131 109 95 131 130 3 3 3 3 3 3 45105 20282 1723 20037 31179;31180 40285;40286;40287 40286 3 VVCICLGNPPETFTWEYR Unmodified 2240.0394 0.039445334 1739 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 0 7 0 1 77.228 77.228 3 0.0038177 24219 TMT1-6 52.172 27.379 15.792 45.544 12.391 23.057 13.326 37.996 15 44 15 22 15 36 1 1 1 1 1 1 3499.9 20283 1739 20038 31181 40288 40288 1 VVDALGNAIDGK Unmodified 1170.6245 0.62445203 888 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 5 0 2 62.114 62.114 2;3 2.1579E-08 18719 TMT1-4 141.08 97.572 559.7 637.28 609.8 691.47 587.76 1118.5 528 644 630 676 629 1065 2 2 2 2 2 2 229940 20284 888 20039 31182;31183 40289;40290 40289 2 VVDELNLLHTELAK Unmodified 1592.8774 0.87737225 2221 Q8NEU8-3;Q8NEU8;Q8NEU8-2 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 0 5.5 0.5 1 1 69.152 69.152 3 5.0631E-08 21682 TMT1-5 114.74 93.209 54.029 73.114 54.734 75.5 54.581 76.261 51 73 58 73 58 73 1 1 1 1 1 1 12106 20285 2221 20040 31184;31185 40291;40292 40292 2 VVDFIDEGVNIGLEVK Unmodified 1744.9247 0.92471638 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 5 0 1 86.218 86.218 3 2.8766E-08 28178 TMT1-4 86.497 55.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20286 1006 20041 31186 40293 40293 1 VVDHYENPR Unmodified 1127.536 0.53597137 2619 Q9H1K1 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial yes yes 0 0 0 0 0 3 0 1 29.514 29.514 3 0.00018946 7182 TMT1-2 126.07 91.347 38.242 35.14 35.02 36.608 34.69 37.386 36 36 36 36 36 36 1 1 1 1 1 1 4737.3 20287 2619 20042 31187 40294 40294 1 VVDLEGSLK Unmodified 958.53351 0.53351176 2166 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 0 5 0 1 57.832 57.832 2 0.026811 17075 TMT1-4 75.294 54.99 176.86 251.07 179.54 129.13 178.23 211.31 167 250 186 131 183 203 1 1 1 1 1 1 11606 20288 2166 20043 31188 40295 40295 1 VVDLLAPYAK Unmodified 1087.6277 0.6277465 508 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 70.044 70.044 2 0.00018204 21425 TMT1-6 130.75 120.76 1247.1 1920.7 1575.5 1397.5 1596.8 2073.6 1180 1909 1626 1392 1656 1988 3 3 3 3 3 3 301520 20289 508 20044 31189;31190 40296;40297;40298 40296 3 VVDLLAQDADIVCR Unmodified 1585.8134 0.81339179 962 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 0 4.5 0.5 1 1 73.042 73.042 3 0.00066886 22990 TMT1-4 74.769 53.928 77.416 109.75 60.397 66.411 54.999 76.249 73 109 65 65 58 73 2 2 2 2 2 2 11114 20290 962 20045 31191;31192 40299;40300 40300 2 VVDLLYWR Unmodified 1062.5862 0.58621603 2709 Q9NQC3-3 RTN4 Reticulon-4 yes yes 0 0 0 0 0 8.5 0.5 1 1 74.072 74.072 2 0.0042661 23137 TMT1-7 126.28 86.211 563.22 736.3 655.44 601.95 728.03 808.57 532 738 674 599 749 778 2 2 2 2 2 2 171170 20291 2709 20046 31193;31194 40301;40302 40301 2 VVDLMAHMASK Unmodified 1200.5995 0.59949961 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 7.5 0.5 1 1 60.004 60.004 3 7.7151E-05 17518 TMT1-7 103.75 66.326 435.58 610.97 393.17 333.19 448.58 563.91 411 608 413 334 462 541 3 3 3 3 3 3 54428 20292 472 20047 31195;31196 40303;40304;40305 40304 3 VVDLMAHMASK Oxidation (M) 1216.5944 0.59441423 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 0 9 0 1 46.424 46.424 3 0.03343 10445 TMT1-8 52.247 25.149 46.279 72.964 94.938 48.473 85.674 90.297 44 73 94 51 87 87 1 1 1 1 1 1 4373.1 20293 472 20047 31197 40306 40306 65 1 VVDLMAHMASKE Unmodified 1329.6421 0.64209271 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 1 6.2 2.79 1 1 1 1 1 61.784 61.784 3 5.4444E-06 18091 TMT1-7 114.72 87.583 2362.1 3538.3 2156.1 1798.7 2136 4262.7 2230 3509 2274 1800 2261 4056 7 7 7 7 7 7 447120 20294 472 20048 31198;31199;31200;31201;31202 40307;40308;40309;40310;40311;40312;40313 40311 7 VVDLMAHMASKE Oxidation (M) 1345.637 0.63700733 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 1 8 0 2 47.109 47.109 3 0.00034503 12512 TMT1-7 67.997 54.579 138.22 200.81 223.65 158.37 168.9 230.77 131 201 225 160 176 221 1 1 1 1 1 1 25635 20295 472 20048 31203;31204 40314;40315 40315 65 2 VVDRDSEEAEIIR Unmodified 1529.7686 0.76855009 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 1 2 0 1 42.184 42.184 3 5.5444E-05 11805 TMT1-1 101.36 72.551 115.59 129.59 119.49 117.58 110.99 143.94 109 131 123 116 116 138 1 1 1 1 1 1 23059 20296 606 20049 31205 40316 40316 1 VVDSLAPSITNVLVQGK Unmodified 1738.9829 0.98289996 2345 Q93100-4;Q93100-3 PHKB Phosphorylase b kinase regulatory subunit beta yes no 0 0 0 0 0 8 0 1 75.964 75.964 3 0.0014156 23815 TMT1-7 61.622 4.4737 69.171 56.232 48.805 59.577 48.277 67.912 65 58 51 58 51 65 1 1 1 1 1 1 11487 20297 2345 20050 31206 40317 40317 1 VVDSLYNK Unmodified 936.49165 0.49164694 54 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 0 6 0 1 51.176 51.176 2 0.0048681 14493 TMT1-5 121.99 48.014 200.52 238.82 180.63 191.5 229.33 223.71 189 240 189 189 235 216 1 1 1 1 1 1 137120 20298 54 20051 31207 40318 40318 1 VVDTLYDGK Unmodified 1008.5128 0.51277632 2852 Q9UDY2-3;Q9UDY2-4;Q9UDY2-6;Q9UDY2;Q9UDY2-7;Q9UDY2-5;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 0 5 0 1 53.805 53.805 2 1.3345E-05 15498 TMT1-4 155.07 101.9 381.81 362.64 443.83 313.82 330.09 537.44 360 372 445 317 347 513 1 1 1 1 1 1 50651 20299 2852 20052 31208 40319 40319 1 VVDVLDSIK Unmodified 986.56481 0.56481189 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 5.5 0.5 1 1 69.407 69.407 2 1.3565E-14 21736 TMT1-5 191.78 73.456 1199.5 1693.6 1288.2 1309.5 1260.7 1195.3 1133 1688 1344 1290 1302 1155 3 3 3 3 3 3 202700 20300 406 20053 31209;31210 40320;40321;40322 40321 3 VVDYTTAK Unmodified 895.4651 0.46509784 1444 P62820;P62820-2 RAB1A Ras-related protein Rab-1A yes no 0 0 0 0 0 5.5 0.5 1 1 44.454 44.454 2;3 0.0011539 11873 TMT1-5 73.931 56.495 176.53 299.81 193.35 166.58 235.4 202.22 167 296 203 167 239 196 1 1 1 1 1 1 15195 20301 1444 20054 31211;31212 40323;40324 40324 2 VVEDIEYLK Unmodified 1106.5859 0.58594126 347 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 0 0 4 0 1 65.013 65.013 2 0.001328 20169 TMT1-3 121.05 79.821 46.301 119.43 51.973 75.955 39.132 99.087 44 116 58 73 44 94 1 1 1 1 1 1 10580 20302 347 20055 31213 40325 40325 1 VVEEIRR Unmodified 899.51886 0.51886475 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 1 3.5 0.5 1 1 31.616 31.616 3 0.0083374 8009 TMT1-2 92.47 42.344 131.39 174.07 131.96 115.98 156.36 165.03 124 174 137 116 160 159 2 2 2 2 2 2 11967 20303 1250 20056 31214;31215 40326;40327 40326 2 VVEGSFVYK Unmodified 1026.5386 0.53859714 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 0 6.5 0.5 1 1 54.724 54.724 2 3.0771E-05 15919 TMT1-5 124.23 73.624 355.6 430.05 463.24 275.9 424.93 567.78 336 434 465 285 437 544 2 2 2 2 2 2 30791 20304 972 20057 31216;31217 40328;40329;40330 40328 3 VVEGTPLIDGR Unmodified 1154.6295 0.62953741 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 4 0 1 51.265 51.265 2 3.8164E-07 14766 TMT1-3 150.53 124.08 92.263 108.23 91.18 80.131 99.667 97.36 87 109 94 80 102 94 1 1 1 1 1 1 18163 20305 1794 20058 31218 40331 40331 1 VVEHNIR Unmodified 865.477 0.47699993 55 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 0 4 0 1 25.16 25.16 3 0.0094531 4506 TMT1-3 82.305 57.673 38.172 51.132 33.358 52.393 72.411 44.838 36 51 36 51 73 44 1 1 1 1 1 1 2076.1 20306 55 20059 31219 40332 40332 1 VVEHPEFLK Unmodified 1096.5917 0.59169534 506 P06396-2 GSN Gelsolin yes yes 0 0 0 0 0 4.5 2.06 1 1 2 47.143 47.143 2;3 2.0739E-05 12882 TMT1-4 150.35 100.64 8650.2 11391 10233 7302.7 9862.4 11287 8172 11415 10430 7409 10120 10852 7 7 7 7 7 7 1441800 + 20307 506 20060 31220;31221;31222;31223 40333;40334;40335;40336;40337;40338;40339 40336 7 VVEIVDEK Unmodified 929.50696 0.50696266 2040 Q6PKG0-3;Q6PKG0 LARP1 La-related protein 1 yes no 0 0 0 0 0 4 0 1 53.445 53.445 2 0.04202 15625 TMT1-3 76.827 43.706 68.806 78.96 90.951 127.34 89.377 90.192 65 80 94 123 94 87 1 1 1 1 1 1 6824.7 20308 2040 20061 31224 40340 40340 1 VVENLQDDFDFNYK Unmodified 1744.7944 0.79443049 1073 P40763-3;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 0 5 0 1 71.664 71.664 3 2.6199E-10 22482 TMT1-4 120.29 72.755 92.389 92.391 83.456 104.82 90.156 97.631 87 94 87 102 94 94 1 1 1 1 1 1 21958 20309 1073 20062 31225 40341 40341 1 VVEPLDYENVIAQR Unmodified 1643.8519 0.85188578 1961 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 yes yes 0 0 0 0 0 4 0 1 64.6 64.6 3 7.056E-20 20010 TMT1-3 166.62 138.32 46.729 65.582 25.545 37.322 26.779 53.602 44 65 29 36 29 51 1 1 1 1 1 1 11656 20310 1961 20063 31226 40342 40342 1 VVEQMCITQYER Unmodified 1554.717 0.71704856 464 P61768;P04156 PRNP Major prion protein yes no 0 0 0 0 0 4 0 1 54.031 54.031 2 0.00043584 15893 TMT1-3 99.732 76.587 30.701 51.758 26.073 45.899 33.97 45.935 29 51 29 44 36 44 1 1 1 1 1 1 8548.4 20311 464 20064 31227 40343 40343 1 VVESCQAEVNK Unmodified 1261.5973 0.597251 1811 Q15018 FAM175B BRISC complex subunit Abro1 yes yes 0 0 0 0 0 4 0 1 39.925 39.925 3 0.00099268 10291 TMT1-3 60.255 27.757 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20312 1811 20065 31228 40344 40344 1 VVESGEDIVLQCAVNEGSGPITYK Unmodified 2563.2476 0.24758343 740 P16284-3;P16284-2;P16284;P16284-6;P16284-5;P16284-4 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 0 4.33 0.471 2 1 72.342 72.342 4 5.3016E-18 22961 TMT1-3 107.21 85.409 223.77 243.77 236.28 171.55 241.93 248.94 211 247 240 174 247 240 4 4 4 4 4 4 73378 20313 740 20066 31229;31230;31231 40345;40346;40347;40348 40345 4 VVETEDAYK Unmodified 1052.5026 0.50260556 1841 Q15286 RAB35 Ras-related protein Rab-35 yes yes 0 0 0 0 0 3 0 1 44.379 44.379 2 0.0038006 13013 TMT1-2 100.84 23.909 161.14 180.92 175.27 199.81 211.11 225.3 152 183 181 196 218 217 1 1 1 1 1 1 25384 20314 1841 20067 31232 40349 40349 1 VVEVGSK Unmodified 716.40685 0.40685468 706;707 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 0 5.5 0.5 1 1 40.849 40.849 2 0.0034955 10319 TMT1-4 139.31 53.227 4379.3 6991.3 6088.3 4395.9 5879.9 5562 4148 6944 6216 4455 5997 5375 4 4 4 4 4 4 776930 20315 706;707 20068 31233;31234 40350;40351;40352;40353 40350 4 VVEVLAGHGHLYSR Unmodified 1535.8209 0.82086043 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 7 0 1 44.87 44.87 4 4.1833E-05 11487 TMT1-6 89.466 73.711 46.622 57.728 50.259 27.485 64.667 59.983 44 58 51 29 65 58 1 1 1 1 1 1 9407.3 20316 1176 20069 31235 40354 40354 1 VVFAELACR Unmodified 1063.5485 0.54845032 2219 Q8NE71-2;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 0 7 0 1 59.187 59.187 2 0.0036519 17154 TMT1-6 69.954 45.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20317 2219 20070 31236 40355 40355 1 VVFEQTK Unmodified 849.45962 0.45961853 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 5 2.35 1 2 1 46.815 46.815 2;3 0.0074406 12280 TMT1-6 127.84 46.547 828.46 1197.6 950.83 824.87 782.78 1292 783 1193 983 820 827 1233 4 4 4 4 4 4 537370 20318 1352 20071 31237;31238;31239;31240 40356;40357;40358;40359 40359 4 VVFGPELVSLGPEEQFTVLSLSAGRPK Unmodified 2855.5433 0.54329517 1796 Q14764 MVP Major vault protein yes yes 0 0 0 0 1 8 0 1 83.454 83.454 4 0.016531 26760 TMT1-7 36.577 8.6872 54.467 26.844 20.294 36.472 88.592 51.838 51 29 22 36 88 51 1 1 1 1 1 1 21469 20319 1796 20072 31241 40360 40360 1 VVFNLNTYK Unmodified 1096.5917 0.59169534 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 62.349 62.349 2 1.5309E-05 16642 TMT1-8 159.37 94.33 146.4 165.45 141.46 107.06 193.66 187.42 138 167 145 109 196 181 1 1 1 1 1 1 23297 20320 758 20073 31242 40361 40361 1 VVFQEFR Unmodified 923.4865 0.48650199 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 7 0.816 1 1 1 54.608 54.608 2 0.0020802 15334 TMT1-6 143.85 106.88 6636.5 9802.4 8825.3 6777.9 8404 9225.2 6280 9772 9010 6827 8635 8879 4 4 4 4 4 4 1645900 20321 1019 20074 31243;31244;31245 40362;40363;40364;40365 40364 4 VVFRDPYR Unmodified 1050.5611 0.56106391 1460 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 1 7 0 1 42.421 42.421 3 0.014032 10533 TMT1-6 77.282 43.486 54.085 80.825 38.757 83.717 75.112 137.5 51 80 44 80 80 131 1 1 1 1 1 1 5935.8 20322 1460 20075 31246 40366 40366 1 VVFTDLGNK Unmodified 991.53385 0.53384611 2305 Q92608 DOCK2 Dedicator of cytokinesis protein 2 yes yes 0 0 0 0 0 8 0 1 58.779 58.779 2 0.0022844 17040 TMT1-7 104.17 61.14 92.582 77.819 63.312 42.259 109.51 74.693 87 80 65 44 109 73 1 1 1 1 1 1 6051.7 20323 2305 20076 31247 40367 40367 1 VVFTPSICK Unmodified 1049.558 0.55795237 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 9 0 2 58.189 58.189 2;3 0.0017058 14980 TMT1-8 118.06 74.245 497.83 533.35 457.19 402.27 408.58 631.14 469 540 471 400 429 603 3 3 3 3 3 3 128860 20324 1797 20077 31248;31249 40368;40369;40370 40369 3 VVFVFGPDK Unmodified 1006.5488 0.54876789 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 8.5 0.5 1 1 67.766 67.766 2 0.00098446 20675 TMT1-7 125.96 86.814 617.56 667.61 598.87 525.09 635.45 622.53 582 676 615 524 651 601 4 4 4 4 4 4 75920 20325 945 20078 31250;31251 40371;40372;40373;40374 40372 4 VVFVFGPDKK Unmodified 1134.6437 0.64373091 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 1 9 0 1 59.312 59.312 3 0.0032902 15384 TMT1-8 92.538 66.917 1607.6 1899.7 1953.9 1417.7 1939.3 2366.6 1518 1918 1977 1437 1994 2272 2 2 2 2 2 2 272660 20326 945 20079 31252 40375;40376 40375 2 VVGALVDQGIFEELTR Unmodified 1744.9359 0.93594977 2002 Q66K14-2;Q66K14 TBC1D9B TBC1 domain family member 9B yes no 0 0 0 0 0 6 0 1 82.625 82.625 3 9.1614E-05 26944 TMT1-5 78.249 59.006 23.335 28.932 20.965 22.127 35.613 29.898 22 29 22 22 36 29 1 1 1 1 1 1 4818 20327 2002 20080 31253 40377 40377 1 VVGAMQLYSVDR Unmodified 1336.6809 0.68092105 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 7 0 1 58.511 58.511 2 1.3802E-08 16883 TMT1-6 145.75 108.24 122.65 205.53 130.84 124.15 132.66 174.24 116 203 138 123 138 167 1 1 1 1 1 1 31215 20328 1540 20081 31254 40378 40378 1 VVGAMQLYSVDRK Unmodified 1464.7759 0.77588407 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 1 8.5 0.5 1 1 53.174 53.174 3 8.5396E-13 12959 TMT1-8 120.84 88.104 115.32 175.25 126.11 101.87 111.71 143.92 109 174 131 102 116 138 1 1 1 1 1 1 11890 20329 1540 20082 31255;31256 40379;40380 40380 2 VVGAQSLK Unmodified 800.4756 0.47560295 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 8 0 1 43.579 43.579 2 0.005579 11036 TMT1-7 116.88 54.167 876.9 1515.6 1016.6 1124.2 754.09 1818.4 830 1496 1074 1097 830 1726 1 1 1 1 1 1 116990 20330 1260 20083 31257 40381 40381 1 VVGDVAYDEAK Unmodified 1164.5663 0.56626845 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 4 0 1 49.579 49.579 2 2.15E-07 14122 TMT1-3 152.54 121.97 84.914 101.64 69.557 65.16 92.493 82.641 80 102 73 65 94 80 1 1 1 1 1 1 10623 20331 657 20084 31258 40382 40382 1 VVGFHVLGPNAGEVTQGFAAALK Unmodified 2281.2219 0.22190145 1912 Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 0 9 0 1 71.461 71.461 4 2.0176E-10 20259 TMT1-8 74.029 46.694 77.329 109.5 75.274 97.124 60.146 98.488 73 109 80 94 65 94 1 1 1 1 1 1 13200 20332 1912 20085 31259 40383 40383 1 VVGKDYLLCDYNR Unmodified 1613.7872 0.78717704 1145;1144 P47756;P47756-2 CAPZB F-actin-capping protein subunit beta no no 0 0 0 0 1 7 0 1 54.162 54.162 3 0.00020732 15168 TMT1-6 91.307 70.077 289.58 322.49 289.79 168.62 228.21 378.31 273 326 294 174 238 361 1 1 1 1 1 1 26972 20333 1144;1145 20086 31260 40384 40384 1 VVGKEQGQNLAR Unmodified 1297.7102 0.71024735 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P61224-4;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 1 6.5 0.5 1 1 34.423 34.423 3 9.8271E-06 7422 TMT1-6 113.24 86.591 224.75 306.04 198.91 222.07 173.28 413.99 212 305 211 217 189 393 2 2 2 2 2 2 20306 20334 1384;1447 20087 31261;31262 40385;40386 40386 2 VVGLEGSDK Unmodified 902.47091 0.4709115 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 0 4.5 0.5 1 1 45.877 45.877 2 0.00024022 12326 TMT1-4 144.09 80.603 585.57 901.72 726.41 580.68 762.29 753.23 554 896 748 584 779 727 3 3 3 3 3 3 81569 20335 84 20088 31263;31264 40387;40388;40389 40388 3 VVGLEGSDKLTILR Unmodified 1498.8719 0.87189295 84 O00602 FCN1 Ficolin-1 yes yes 0 0 0 0 1 8 0 1 60.9 60.9 3 0.0009191 17861 TMT1-7 76.196 57.064 209.42 361.26 203.78 161.6 118.43 355.86 198 356 216 161 132 337 1 1 1 1 1 1 30367 20336 84 20089 31265 40390 40390 1 VVGPQQLHSETNER Unmodified 1592.7907 0.79068251 2524 Q9BSF4 C19orf52 Uncharacterized protein C19orf52 yes yes 0 0 0 0 0 4 0 1 34.118 34.118 3 0.0033482 7986 TMT1-3 46.704 37.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20337 2524 20090 31266 40391 40391 1 VVGRPQPQLQYVDALGYVSLFPLLLR Unmodified 2940.6589 0.65893405 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 1 9 0 1 90.925 90.925 4 2.7363E-12 27825 TMT1-8 72.399 56.763 23.37 21.474 21.395 22.505 14.121 15.587 22 22 22 22 15 15 1 1 1 1 1 1 3540.6 20338 1736 20091 31267 40392 40392 1 VVGSEFVQK Unmodified 991.53385 0.53384611 1118 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 0 7 0 1 51.162 51.162 2 0.01118 13997 TMT1-6 87.308 44.061 69.132 63.678 49.073 43.556 85.644 97.76 65 65 51 44 87 94 1 1 1 1 1 1 7049 20339 1118 20092 31268 40393 40393 1 VVGSELIQK Unmodified 971.56515 0.56514624 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 6.5 0.5 1 1 53.107 53.107 3 0.00094684 15385 TMT1-5 98.458 27.079 239 243.33 201.18 229.73 223.81 241.99 225 247 210 225 232 233 2 2 2 2 2 2 15208 20340 1415 20093 31269;31270 40394;40395 40394 2 VVGVLLGSWQK Unmodified 1184.6917 0.69174374 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 9 0 2 73.887 73.887 2;3 9.3364E-07 21190 TMT1-8 114.97 84.356 191.61 277.36 202.17 167.1 179.59 273.1 181 276 210 167 188 261 2 2 2 2 2 2 28048 20341 1251 20094 31271;31272 40396;40397 40396 2 VVGWSGPVPR Unmodified 1052.5767 0.57671398 1248 P51610-2;P51610;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 9 0 1 52.698 52.698 2 0.0090758 12856 TMT1-8 82.426 37.445 46.439 80.965 61.222 90.163 68.036 121.71 44 80 65 87 73 116 1 1 1 1 1 1 7153.3 20342 1248 20095 31273 40398 40398 1 VVHFLGR Unmodified 826.48136 0.48135703 1140 P46976;P46976-2 GYG1 Glycogenin-1 yes no 0 0 0 0 0 9 0 1 42.729 42.729 3 0.001172 9041 TMT1-8 132.8 86.433 54.117 72.279 40.661 28.191 57.562 52.723 51 72 43 29 58 51 1 1 1 1 1 1 10761 20343 1140 20096 31274 40399 40399 1 VVHIMDFQR Unmodified 1143.5859 0.58589846 1109 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 0 7 0 1 49.171 49.171 3 0.00066569 13197 TMT1-6 101.64 83.835 61.553 87.748 40.051 44.494 64.398 45.066 58 87 44 44 65 44 1 1 1 1 1 1 9335.4 20344 1109 20097 31275 40400 40400 1 VVHPLAQPK Unmodified 987.58655 0.58655038 414 P01133-2;P01133-3;P01133 EGF Pro-epidermal growth factor;Epidermal growth factor yes no 0 0 0 0 0 8 0 1 36.191 36.191 3 0.016533 8150 TMT1-7 60.436 43.66 207.68 244.89 234.39 190.01 254.55 252.84 196 247 239 191 260 244 1 1 1 1 1 1 11003 20345 414 20098 31276 40401 40401 1 VVIEACDELGIILAHTNLR Unmodified 2135.1409 0.14087394 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 6 0 1 81.305 81.305 3 0.044863 26425 TMT1-5 34.148 16.348 37.965 43.001 75.05 26.149 57.143 67.659 36 44 73 29 58 65 1 1 1 1 1 1 5198.5 20346 981 20099 31277 40402 40402 1 VVIEDEQLVLGASQEPVGR Unmodified 2037.0742 0.074234161 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 3.25 0.829 1 1 2 68.017 68.017 2;3 1.3117E-35 22326 TMT1-2 160.45 132.59 101.47 153.81 127.84 93.51 143.84 150.47 96 153 131 95 146 145 5 5 5 5 4 5 109790 20347 2013 20100 31278;31279;31280;31281 40403;40404;40405;40406;40407 40404 5 VVIGMDVAASEFFR Oxidation (M) 1555.7705 0.77046434 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 0 0 7 0.816 1 1 1 69.39 69.39 2;3 0.00018971 21810 TMT1-5 88.163 75.536 115.23 167.43 148.7 115.42 133.28 167.82 109 167 152 116 138 161 3 3 3 3 3 3 44878 20348 514 20101 31282;31283;31284 40408;40409;40410 40408 78 3 VVIGMDVAASEFFR Unmodified 1539.7755 0.77554972 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 7.8 0.748 2 2 1 79.832 79.832 2;3 1.943E-113 25325 TMT1-7 279.9 221.67 776.92 1045.2 726.01 617.68 772.13 996 733 1043 758 618 798 955 11 11 11 11 11 11 222640 20349 514 20101 31285;31286;31287;31288;31289 40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422 40419 12 VVIIGAGK Unmodified 755.49052 0.49052473 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 51.959 51.959 2 0.0013515 12592 TMT1-8 146.21 76.823 121.8 156.76 315 111.99 195.25 164.99 116 160 305 123 197 160 1 1 1 1 1 1 16914 20350 1792 20102 31290 40423 40423 1 VVIIGAGKPAAVVLQTK Unmodified 1663.0396 0.039626976 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 9 0 1 62.401 62.401 3 3.7389E-20 16744 TMT1-8 133.71 112.08 437.64 636.67 565.94 282 588.79 752.85 414 635 572 299 600 722 2 2 2 2 2 2 66980 20351 1792 20103 31291 40424;40425 40425 2 VVINGQEVK Unmodified 984.5604 0.56039521 608 P09960;P09960-4;P09960-2;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 6 0 1 46.448 46.448 2 0.00081517 12755 TMT1-5 128.38 83.071 92.357 116.05 68.639 65.515 76.499 121.47 87 116 73 65 80 116 1 1 1 1 1 1 7805.7 20352 608 20104 31292 40426 40426 1 VVISLQLTAEK Unmodified 1199.7125 0.71253876 945 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 0 8 0 1 65.74 65.74 2 1.4576E-11 19773 TMT1-7 170.52 120.4 230.42 341.24 298.16 229.4 340.5 408.16 218 340 305 232 349 392 3 3 3 3 3 3 22700 20353 945 20105 31293 40427;40428;40429 40427 3 VVITFNQGLR Unmodified 1145.6557 0.65569258 2748 Q9NUB1-3;Q9NUB1-2;Q9NUB1;Q9NUB1-4 ACSS1 Acetyl-coenzyme A synthetase 2-like, mitochondrial yes no 0 0 0 0 0 9 0 1 58.113 58.113 2 0.046694 15002 TMT1-8 61.48 9.6256 46.369 73.213 79.714 49.82 62.321 98.426 44 73 80 51 65 94 1 1 1 1 1 1 6914.4 20354 2748 20106 31294 40430 40430 1 VVITVQQLSNK Unmodified 1227.7187 0.71868677 1966 Q5R372-4;Q5R372;Q5R372-3;Q5R372-2 RABGAP1L Rab GTPase-activating protein 1-like yes no 0 0 0 0 0 9 0 1 59.289 59.289 3 0.028451 15459 TMT1-8 44.847 29.696 46.413 73.337 72.113 50.248 63.621 60.013 44 73 73 51 65 58 1 1 1 1 1 1 3637.9 20355 1966 20107 31295 40431 40431 1 VVIVDPETGK Unmodified 1055.5863 0.58627561 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 5 0 1 54.064 54.064 2 0.0001755 15603 TMT1-4 131.44 101.97 68.904 94.343 61.411 65.36 107.68 97.131 65 94 65 65 109 94 1 1 1 1 1 1 8634.8 20356 1833 20108 31296 40432 40432 1 VVLAGGVAPALFR Unmodified 1268.7605 0.760492 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5 4 1 1 69.51 69.51 2 6.0553E-70 19263 TMT1-8 247.94 196.98 1824.3 2373.4 2276.3 1725.9 2254.6 2490.9 1724 2382 2315 1742 2313 2397 4 4 4 4 4 4 899570 20357 2112 20109 31297;31298 40433;40434;40435;40436 40434 4 VVLAYEPVWAIGTGK Unmodified 1601.8817 0.88172935 1352 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 0 7 3.03 1 2 2 77.287 77.287 2;3;4 1.5724E-16 24294 TMT1-7 145.23 117.02 1276.7 1737.9 1255.4 1199.7 1564.8 1897.6 1205 1734 1312 1193 1611 1822 7 7 7 7 7 7 499910 20358 1352 20110 31299;31300;31301;31302;31303 40437;40438;40439;40440;40441;40442;40443 40438 7 VVLCELGNPMK Unmodified 1258.6414 0.64136442 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 6 2.92 1 1 2 63.115 63.115 2;3 1.6196E-06 18652 TMT1-7 137.98 73.679 420.94 616.48 504.59 400.89 563.77 591.53 398 614 519 404 576 570 5 5 5 5 5 5 152800 20359 565 20111 31304;31305;31306;31307 40444;40445;40446;40447;40448 40447 5 VVLCELGNPMKK Oxidation (M) 1402.7312 0.73124206 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 1 0 1 8 0 1 51.329 51.329 3 0.014005 14155 TMT1-7 55.452 41.587 115.24 167.46 146.92 155.22 115.01 189.66 109 167 152 152 123 181 1 1 1 1 1 1 25245 20360 565 20112 31308 40449 40449 104 1 VVLCELGNPMKK Unmodified 1386.7363 0.73632744 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 1 9 0 1 57.471 57.471 3 0.00031879 14667 TMT1-8 95.273 68.808 467.44 755.88 507.02 444.87 368.27 925.44 442 748 531 441 402 878 2 2 2 2 2 2 70537 20361 565 20112 31309 40450;40451 40450 2 VVLDDKDYFLFR Unmodified 1528.7926 0.79257999 1395 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 1 7.5 0.5 1 1 68.816 68.816 3 9.2694E-09 21007 TMT1-6 138.89 127.1 1609.5 2213.9 1544.2 1447.9 1692.4 2022.9 1519 2207 1617 1438 1748 1943 3 3 3 3 3 3 263240 20362 1395 20113 31310;31311 40452;40453;40454 40453 3 VVLDGEEVQIDILDTAGQEDYAAIR Unmodified 2731.3552 0.35521963 650;649 P11234;P11234-2;P11234-3;P11233 RALB;RALA Ras-related protein Ral-B;Ras-related protein Ral-A no no 0 0 0 0 0 3 0 1 83.626 83.626 3 3.0585E-05 28205 TMT1-2 58.904 56.43 0 7 0 0 0 7 0 7 0 0 0 7 0 1 0 0 0 1 1056.4 20363 650;649 20114 31312 40455;40456 40455 2 VVLDVGSGTGILCMFAAK Unmodified 1836.9478 0.94777678 2497 Q99873-2;Q99873-3;Q99873;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 0 9 0 1 86.33 86.33 3 0.0009705 26038 TMT1-8 56.215 29.406 30.66 59.198 26.701 21.789 35.372 37.367 29 58 29 22 36 36 1 1 1 1 1 1 3260.1 20364 2497 20115 31313 40457 40457 1 VVLEAPLITESALEVVR Unmodified 1837.0561 0.056064901 2317 Q92797 SYMPK Symplekin yes yes 0 0 0 0 0 5 0 1 82.487 82.487 3 0.010505 26737 TMT1-4 49.049 30.22 15.857 21.981 21.395 22.673 5.2239 30.765 15 22 22 22 7 29 1 1 1 1 1 1 2211.4 20365 2317 20116 31314 40458 40458 1 VVLEGGIDPILR Unmodified 1279.75 0.7499869 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 5.5 0.5 1 1 67.133 67.133 2 4.3452E-14 20738 TMT1-4 178.32 142.78 359.58 672.97 491.43 311.38 483.5 459.51 341 663 506 320 491 444 4 4 4 4 4 4 161870 20366 489 20117 31315;31316 40459;40460;40461;40462 40459 4 VVLEGPAPWGFR Unmodified 1326.7085 0.70845643 2718 Q9NR12;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 8.5 0.5 1 1 69.08 69.08 2 4.4961E-10 21096 TMT1-7 157.59 129.42 253.22 326.41 265.63 272.53 300.8 379.44 239 327 276 269 312 364 3 3 3 3 3 3 81826 20367 2718 20118 31317;31318 40463;40464;40465 40463 3 VVLEHEEVR Unmodified 1108.5877 0.58767259 3047 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 0 2.5 0.5 1 1 35.674 35.674 3 0.00014169 9539 TMT1-2 129.63 94.007 84.564 139.52 96.213 120.18 104.35 120.68 80 138 102 117 109 116 2 2 2 2 2 2 24639 20368 3047 20119 31319;31320 40466;40467 40467 2 VVLFEMEAR Unmodified 1092.5638 0.56376603 252 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 0 6 0 1 63.991 63.991 2 0.014732 19628 TMT1-5 82.426 45.332 53.951 80.453 61.57 82.183 84.381 82.872 51 80 65 80 87 80 1 1 1 1 1 1 13645 20369 252 20120 31321 40468 40468 1 VVLGAHNLSR Unmodified 1064.6091 0.60907674 563 P08246 ELANE Neutrophil elastase yes yes 0 0 0 0 0 8.5 0.5 1 1 36.637 36.637 3 2.4129E-05 8190 TMT1-7 136.84 100.63 275.97 473.51 285.09 290.9 366.6 327.46 261 467 303 288 374 317 2 2 2 2 2 2 57826 20370 563 20121 31322;31323 40469;40470 40469 2 VVLIGDSGVGK Unmodified 1042.6023 0.60226003 1880 Q15907;Q15907-2;P62491-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 0 7 0 1 57.197 57.197 2 1.3792E-16 16414 TMT1-6 183.65 21.732 1040.5 1423 1190.1 954.66 1027 1499.3 983 1422 1223 956 1073 1434 2 2 2 2 2 2 266570 20371 1880 20122 31324 40471;40472 40472 2 VVLIGGKPDR Unmodified 1052.6342 0.63422886 1409;1410 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 1 6 3.56 1 1 1 45.036 45.036 3 6.4731E-05 10946 TMT 1-phospho 104.42 48.703 1544 2698 1870.9 1799.9 2337.9 2737.9 1462 2663 1960 1789 2404 2631 2 2 2 2 2 2 152680 20372 1409;1410 20123 31325;31326;31327 40473;40474;40475 40473 3 VVLLAEGR Unmodified 855.5178 0.51780212 210 O43865-2;O43865 AHCYL1 Putative adenosylhomocysteinase 2 yes no 0 0 0 0 0 6 0 1 50.551 50.551 2 0.012099 14349 TMT1-5 97.033 52.266 107.98 113.62 150.9 139.21 139.85 158.04 102 116 152 138 145 152 1 1 1 1 1 1 12472 20373 210 20124 31328 40476 40476 1 VVLLEDLASQVGLR Unmodified 1510.8719 0.87189295 2416 Q96HY6;Q96HY6-2 DDRGK1 DDRGK domain-containing protein 1 yes no 0 0 0 0 0 8 0 1 87.734 87.734 3 1.4626E-14 28300 TMT1-7 131.06 110.94 7.2279 46.793 35.855 29.961 36.791 15.578 7 45 37 30 37 15 1 2 2 2 2 1 8259.8 20374 2416 20125 31329 40477;40478 40478 2 VVLLGEFLHPCEDDIVCK Unmodified 2142.0489 0.048947388 2781 Q9NY12-2;Q9NY12 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 0 0 6 0 1 75.509 75.509 4 0.00039412 24200 TMT1-5 64.136 40.095 70.402 41.487 34.825 28.81 43.132 45.673 66 44 36 29 44 44 1 1 1 1 1 1 4620.6 20375 2781 20126 31330 40479 40479 1 VVLLGEGCVGK Unmodified 1129.6165 0.61652988 2905 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 0 7 0 1 58.485 58.485 2 1.5309E-06 16884 TMT1-6 138.66 103.39 84.647 108.45 108.55 55.023 101.08 89.858 80 109 109 58 102 87 1 1 1 1 1 1 12772 20376 2905 20127 31331 40480 40480 1 VVLPCSVQEYQVGQLYSVAEASK Unmodified 2553.2785 0.27848963 1166 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 0 7 0 1 75.529 75.529 4 4.7135E-18 23580 TMT1-6 112.58 110.36 68.943 86.898 61.095 82.472 70.515 59.816 65 87 65 80 73 58 1 1 1 1 1 1 16140 20377 1166 20128 31332 40481 40481 1 VVLPIEAPIR Unmodified 1105.6859 0.68593008 390 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 0 7 0 1 64.444 64.444 2 5.98E-14 19185 TMT1-6 180.34 161.94 407.66 445.35 356.55 385.73 502.81 498.4 384 450 372 381 514 481 2 2 2 2 2 2 207980 20378 390 20129 31333 40482;40483 40482 2 VVLPTFILEPR Unmodified 1282.7649 0.76490868 2583 Q9BZF1-3;Q9BZF1-2;Q9BZF1 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 0 9 0 1 77.277 77.277 2 7.8537E-06 22513 TMT1-8 111.61 78.344 116.19 60.021 78.044 97.176 106.73 82.235 109 65 80 95 109 80 2 2 2 2 2 2 14330 20379 2583 20130 31334 40484;40485 40485 2 VVLPTFILER Unmodified 1185.7121 0.71214483 2454 Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6;Q96SU4-5;Q96SU4-4 OSBPL9 Oxysterol-binding protein-related protein 9 yes no 0 0 0 0 0 9 0 1 74.987 74.987 2 0.00028252 21631 TMT1-8 110.88 54.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20380 2454 20131 31335 40486 40486 1 VVLPYLVPK Unmodified 1026.6478 0.64775366 2308 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 0 9 0 1 69.941 69.941 2 0.0069215 19650 TMT1-8 97.068 57.92 37.732 104.95 61.595 50.462 85.583 90.3 36 102 65 51 87 87 1 1 1 1 1 1 5559.6 20381 2308 20132 31336 40487 40487 1 VVLQAANADIQQAWVQDINQVLETQR Unmodified 2949.5308 0.530833 214 O60229-6;O60229-4;O60229-5;O60229 KALRN Kalirin yes no 0 0 0 0 0 7 0 1 91.08 91.08 3 6.2728E-30 29504 TMT1-6 128.97 120.53 23.499 29.738 35.749 29.183 20.373 37.795 22 30 36 29 22 36 1 2 2 2 2 2 8854.6 20382 214 20133 31337 40488;40489 40488 2 VVLQELR Unmodified 855.5178 0.51780212 1697;1877 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 0 6 0 1 49.761 49.761 2 0.0083627 14090 TMT1-5 116.88 39.143 329.89 497.75 399.9 395.22 441.99 459.63 312 495 415 391 455 443 2 2 2 2 2 2 81689 20383 1697;1877 20134 31338 40490;40491 40491 2 VVLTQANK Unmodified 871.51272 0.51271674 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 8 0 1 43.042 43.042 2 0.00075436 10830 TMT1-7 148.38 73.967 84.627 115.95 105.62 110.75 111.31 143.93 80 116 109 109 116 138 1 1 1 1 1 1 8993.5 20384 336 20135 31339 40492 40492 1 VVLVAVDK Unmodified 841.5273 0.52730417 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 7 0 1 57.115 57.115 2 0.0061982 16355 TMT1-6 108.46 28.281 210.61 251.41 277.58 255.89 275.89 456.9 199 254 282 254 290 436 1 1 1 1 1 1 21046 20385 409 20136 31340 40493 40493 1 VVLVLAGR Unmodified 825.54362 0.54362294 1390 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 0 9 0 1 56.949 56.949 2 0.0073626 14573 TMT1-8 111.81 68.767 138.54 235.16 140.29 210.29 171.85 227.48 131 232 152 203 181 218 2 2 2 2 2 2 21376 20386 1390 20137 31341 40494;40495 40495 2 VVLVTGAGAGLGR Unmodified 1168.6928 0.69280637 1250 P51659 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 0 0 0 0 0 9 0 1 54.979 54.979 2 7.0808E-29 13680 TMT1-8 196.07 162.11 145.37 287.79 210.47 166.27 197.72 203.29 138 283 218 167 203 196 2 2 2 2 2 2 37123 20387 1250 20138 31342 40496;40497 40496 2 VVLVTSGGTK Unmodified 959.56515 0.56514624 2669 Q9HAB8 PPCS Phosphopantothenate--cysteine ligase yes yes 0 0 0 0 0 9 0 1 48.178 48.178 2 0.00020677 11064 TMT1-8 113.71 54.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20388 2669 20139 31343 40498 40498 1 VVLWGSDYSK Unmodified 1152.5815 0.58152458 374 O95834;O95834-2;O95834-3 EML2 Echinoderm microtubule-associated protein-like 2 yes no 0 0 0 0 0 8 0 1 62.449 62.449 2 0.00014896 18472 TMT1-7 134.25 105.52 115.32 136.39 159.26 114.48 149.87 142.83 109 138 160 116 153 138 2 2 2 2 2 2 12755 20389 374 20140 31344 40499;40500 40499 2 VVMITGDNK Unmodified 975.50592 0.5059168 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 7 0 1 50.148 50.148 2 0.0001989 13555 TMT1-6 146.03 91.825 138.45 221.94 167.81 193.2 179.44 273.11 131 220 176 189 189 261 1 1 1 1 1 1 25307 20390 2344 20141 31345 40501 40501 1 VVMYEGK Unmodified 824.41023 0.4102255 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 0 5.5 0.5 1 1 46.485 46.485 2 0.0066206 12742 TMT1-4 79.116 51.009 1737 2230 2106.4 1760.2 2481.2 2697.6 1641 2239 2151 1768 2538 2597 1 1 1 1 1 1 178330 + 20391 32;554 20142 31346;31347 40502;40503 40502 2 VVMYEGKK Unmodified 952.50519 0.50518852 554;32 CON__Q28194;P07996;P07996-2 THBS1 Thrombospondin-1 no no 0 0 0 0 1 8 0 1 41.958 41.958 3 0.0052506 10406 TMT1-7 91.318 49.816 2464.1 2675.6 1792.9 2044.4 1791.3 4071.1 2319 2699 1901 1999 1936 3867 1 1 1 1 1 1 117420 + 20392 32;554 20143 31348 40504 40504 1 VVNAMGK Unmodified 717.38435 0.3843451 1149 P48059;P48059-4;P48059-2;P48059-5;P48059-3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 0 8 0 1 41.962 41.962 2 0.0098994 10361 TMT1-7 110.36 33.771 371.83 566.57 505.94 394.84 416.32 781.22 352 564 517 396 441 744 2 2 2 2 2 2 90925 20393 1149 20144 31349 40505;40506 40505 2 VVNDELYR Unmodified 1006.5084 0.50835964 988 P32019-3;P32019-2;P32019;P32019-4 INPP5B Type II inositol 1,4,5-trisphosphate 5-phosphatase yes no 0 0 0 0 0 3 0 1 44.012 44.012 2 0.040277 12958 TMT1-2 77.318 56.836 92.28 123.39 75.408 73.71 84.257 97.8 87 123 80 73 87 94 1 1 1 1 1 1 16172 20394 988 20145 31350 40507 40507 1 VVNEINIEDLCLTK Unmodified 1658.8549 0.85492225 2183 Q8N5K1 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 0 0 0 0 0 6 0 1 72.329 72.329 3 1.4888E-05 22933 TMT1-5 96.414 69.385 154.06 165.35 116.52 155.93 173.58 249.82 145 167 124 152 181 239 2 2 2 2 2 2 15156 20395 2183 20146 31351 40508;40509 40508 2 VVNIVPVIAK Unmodified 1050.6801 0.68011642 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 9 0 1 66.205 66.205 2 1.667E-05 18149 TMT1-8 135.83 98.81 177.47 178.31 138.04 162.94 197.62 210.76 167 181 145 160 203 203 1 1 1 1 1 1 34573 20396 2864 20147 31352 40510 40510 1 VVNPLFEK Unmodified 944.53312 0.53311783 1438 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 0 7 0 1 59.468 59.468 2 0.0010162 17266 TMT1-6 99.802 58.354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20397 1438 20148 31353 40511 40511 1 VVNPTQK Unmodified 784.4443 0.44430282 407 P01009;P20848 SERPINA1;SERPINA2 Alpha-1-antitrypsin;Short peptide from AAT;Putative alpha-1-antitrypsin-related protein yes no 0 0 0 0 0 7 0 1 38.086 38.086 2 0.011327 8865 TMT1-6 104.37 54.326 183.78 268.36 262.87 226.17 217.23 225.12 174 268 268 225 225 217 2 2 2 2 2 2 24112 20398 407 20149 31354 40512;40513 40513 2 VVNTQCGYDVR Unmodified 1309.6085 0.60848439 2230 Q8NG11;Q8NG11-2;Q8NG11-3 TSPAN14 Tetraspanin-14 yes no 0 0 0 0 0 4 0 1 40.176 40.176 2 7.1029E-05 10407 TMT1-3 114.71 74.208 69.987 71.633 78.964 66.106 70.462 83.269 66 73 80 66 73 80 2 2 2 2 2 2 9393.2 20399 2230 20150 31355 40514;40515 40514 2 VVNVELPIEANLVWQLGK Unmodified 2020.1357 0.13571221 2303 Q92598-2;Q92598-3;Q92598;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 0 8 0 1 88.79 88.79 3 8.4665E-06 28631 TMT1-7 79.514 61.15 30.802 28.296 28.883 14.406 14.237 23.046 29 29 29 15 15 22 1 1 1 1 1 1 4801.6 20400 2303 20151 31356 40516 40516 1 VVNVGGK Unmodified 671.39662 0.39662435 1369 P61018;P61018-2 RAB4B Ras-related protein Rab-4B yes no 0 0 0 0 0 8 0 1 40.517 40.517 2 0.0069148 9838 TMT1-7 78.616 28.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20401 1369 20152 31357 40517 40517 1 VVPCLVTPVTGRENSTAK Unmodified 1927.0197 0.01969617 270 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;O75369-7 FLNB Filamin-B yes no 0 0 0 0 1 9 0 1 62.672 62.672 3 0.0024249 16745 TMT1-8 52.887 14.099 207.12 290.81 289.79 244.83 244.24 296.84 196 291 295 244 254 285 1 1 1 1 1 1 97285 20402 270 20153 31358 40518 40518 1 VVPDPNVIK Unmodified 979.57023 0.57023162 2752 Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2;Q9UMR2-3;Q9NUU7-2 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 0 6 0 1 53.741 53.741 2 0.013745 15608 TMT1-5 83.783 47.597 91.985 146.31 105.5 71.649 98.445 144.3 87 145 109 73 102 138 1 1 1 1 1 1 13623 20403 2752 20154 31359 40519 40519 1 VVPDSCCK Unmodified 963.41539 0.41538723 1157 P48509 CD151 CD151 antigen yes yes 0 0 0 0 0 5 0 1 38.622 38.622 2 0.015024 9471 TMT1-4 93.195 61.823 138.59 126.29 224.48 118.71 125.07 189.38 131 131 220 123 131 181 1 1 1 1 1 1 27180 20404 1157 20155 31360 40520 40520 1 VVPEMTEILK Unmodified 1157.6366 0.63659662 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 1 68.161 68.161 3 0.0078404 21289 TMT1-5 66.19 36.523 116.07 83.436 78.094 64.522 99.322 128.28 109 87 80 65 102 123 1 1 1 1 1 1 9922.1 20405 693 20156 31361 40521 40521 1 VVPFISAIASAEVK Unmodified 1429.8181 0.81806646 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 9 0 1 80.619 80.619 3 4.4195E-20 23866 TMT1-8 162.31 122.39 184.82 202.16 145.62 154.19 173.92 242.35 174 204 153 152 181 232 2 2 2 2 2 2 20004 20406 1786 20157 31362 40522;40523 40523 2 VVPGYGHAVLR Unmodified 1166.656 0.65602693 271 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 1 1 41.496 41.496 3 2.2559E-09 10197 TMT1-6 162.88 116.47 184.22 264.17 193.65 206.85 185.59 288.92 174 263 203 203 196 276 2 2 2 2 2 2 83463 20407 271 20158 31363;31364 40524;40525;40526 40525 3 VVPIASLTPYQSK Unmodified 1401.7868 0.78676633 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 0 9 0 1 63.799 63.799 3 0.00012966 17199 TMT1-8 89.301 66.471 68.951 103.11 46.049 58.338 122.91 89.235 65 102 51 58 123 87 1 1 1 1 1 1 9185.9 20408 913 20159 31365 40527 40527 1 VVPLADIITPNQFEAELLSGR Unmodified 2281.2318 0.23179744 88 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 0 0 0 7 0 1 91.113 91.113 3 6.0684E-05 29578 TMT1-6 65.184 51.556 84.908 94.07 76.854 81.563 68.945 106.76 80 95 80 80 73 102 3 3 3 3 3 3 12729 20409 88 20160 31366 40528;40529;40530 40530 3 VVPQAVLDLLTWQELEK Unmodified 1980.0932 0.093178689 1976 Q5T447;Q5T447-2 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes no 0 0 0 0 0 8 0 1 95.998 95.998 3 0.0051653 31282 TMT1-7 52.52 34.155 11.492 17.755 37.225 13.553 33.122 22.507 11 18 36 15 33 22 1 1 1 1 1 1 4800.7 20410 1976 20161 31367 40531 40531 1 VVPSDLYPLVLGFLR Unmodified 1686.9709 0.97087871 1804 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 0 9 0 2 96.692 96.692 2;3 2.0761E-05 29862 TMT1-8 73.881 58.85 61.384 64.612 88.081 41.905 49.859 45.481 58 66 87 44 51 44 3 3 3 3 3 3 10308 20411 1804 20162 31368;31369 40532;40533;40534 40533 3 VVPTTDHIDTEK Unmodified 1353.6776 0.67760981 294 O75663;O75663-2 TIPRL TIP41-like protein yes no 0 0 0 0 0 4 0 1 42.123 42.123 3 0.00073943 11223 TMT1-3 79.492 58.493 68.77 93.971 84.213 88.357 91.17 90.14 65 94 87 87 94 87 1 1 1 1 1 1 26883 20412 294 20163 31370 40535 40535 1 VVQCISELGIFGVYVR Unmodified 1837.976 0.97604044 1160 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 0 0 9 0 1 84.135 84.135 3 9.9817E-17 25148 TMT1-8 124.09 94.159 23.324 21.345 29.351 14.107 28.652 30.096 22 22 29 15 29 29 1 1 1 1 1 1 9388.1 20413 1160 20164 31371 40536 40536 1 VVQGKEPAHLMSLFGGK Unmodified 1796.9607 0.96072473 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 9 0 1 58.5 58.5 4 5.4271E-05 15158 TMT1-8 70.96 52.229 116.13 91.16 61.312 66.509 46.895 98.866 109 94 65 65 51 94 1 1 1 1 1 1 5107.6 + 20414 506 20165 31372 40537 40537 1 VVQTDETAR Unmodified 1017.5091 0.50908792 2 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 0 2 0 1 30.865 30.865 2 0.002117 7310 TMT1-1 105.94 71.979 30.591 43.898 51.147 27.994 34.793 45.911 29 44 51 29 36 44 1 1 1 1 1 1 4633.5 20415 2 20166 31373 40538 40538 1 VVQVSAGDSHTAALTDDGR Unmodified 1897.913 0.91298249 783 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 0 3 0 1 42.411 42.411 3 8.1692E-14 12261 TMT1-2 114.75 108.74 38.009 74.425 40.94 45.14 27.225 30.137 36 73 44 44 29 29 1 1 1 1 1 1 8548.8 20416 783 20167 31374 40539 40539 1 VVQVVKPHTPLIR Unmodified 1484.9191 0.91911791 1514 P82909 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 0 0 0 0 1 9 0 1 45.891 45.891 4 4.5925E-06 10183 TMT1-8 105.03 92.612 115.16 222.29 113.2 133.91 134.08 119.83 109 218 123 131 138 116 1 1 1 1 1 1 7466.7 20417 1514 20168 31375 40540 40540 1 VVQYNINTEELYSYLK Unmodified 1974.9939 0.99385857 2793 Q9NZ32 ACTR10 Actin-related protein 10 yes yes 0 0 0 0 0 7 0 1 75.886 75.886 4 0.0031931 23729 TMT1-6 54.598 37.519 23.286 28.796 29.294 5.3586 29.055 30.085 22 29 29 7 29 29 1 1 1 1 1 1 4362.7 20418 2793 20169 31376 40541 40541 1 VVRDPQGIR Unmodified 1038.5934 0.59342667 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 1 6 0 1 30.555 30.555 3 0.0042853 6536 TMT1-5 85.716 51.53 532.08 734.93 481.19 438.36 272.92 664.86 502 732 506 432 302 631 2 2 2 2 2 2 58800 20419 1397 20170 31377 40542;40543 40543 2 VVSAATQLR Unmodified 943.54508 0.5450795 260 O75298-3;O75298;O75298-2 RTN2 Reticulon-2 yes no 0 0 0 0 0 7 0 1 41.407 41.407 2 0.023547 10108 TMT1-6 76.605 20.514 146.43 157.97 143.25 76.898 106.6 113.15 138 160 145 80 109 109 1 1 1 1 1 1 25027 20420 260 20171 31378 40544 40544 1 VVSAAVQAQHSATK Unmodified 1395.747 0.74702678 2631 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 0 0 0 0 0 7 0 1 38.398 38.398 3 8.3842E-05 8944 TMT1-6 87.083 61.741 61.391 63.552 87.815 49.307 63.921 52.542 58 65 87 51 65 51 1 1 1 1 1 1 6765.6 20421 2631 20172 31379 40545 40545 1 VVSEDFLQDVSASTK Unmodified 1623.7992 0.79918151 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 5 0 1 68.543 68.543 3 8.2529E-15 21281 TMT1-4 129.93 110.85 184.95 186.33 137.17 170.79 189.34 228.05 174 189 145 167 196 219 1 1 1 1 1 1 27733 20422 606 20173 31380 40546 40546 1 VVSEIPVLK Unmodified 982.60628 0.60628277 2995 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 0 0 0 0 0 7 0 1 62.336 62.336 2 0.046238 18360 TMT1-6 67.494 58.721 276.21 389.99 316.05 242.72 331.32 352.99 261 389 325 245 339 340 1 1 1 1 1 1 33372 20423 2995 20174 31381 40547 40547 1 VVSGFVFLR Unmodified 1022.5913 0.59130141 822 P20936-2;P20936-4;P20936 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 0 0 9 0 1 68.211 68.211 2 0.016205 18969 TMT1-8 72.038 42.889 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20424 822 20175 31382 40548 40548 1 VVSGPRPR Unmodified 866.50863 0.50863441 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 1 9 0 1 24.59 24.59 3 0.0020613 4113 TMT1-8 90.308 50.547 5.3051 4.8628 5.9489 5.0409 3.6998 7.3564 5 5 6 5 4 7 1 1 1 1 1 1 286.82 20425 1081 20176 31383 40549 40549 1 VVSNFMDFDETGVLK Unmodified 1699.8127 0.81272309 2613 Q9H0P0-3;Q9H0P0-2;Q9H0P0-1;Q9H0P0 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 0 6 0 1 76.542 76.542 3 0.00022827 24573 TMT1-5 77.746 52.692 69.212 56.345 41.888 44.675 48.962 67.893 65 58 44 44 51 65 1 1 1 1 1 1 7054.4 20426 2613 20177 31384 40550 40550 1 VVSPWNSEDAK Unmodified 1230.5881 0.58806652 645 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 0 6 0 1 51.521 51.521 2 4.8137E-07 14757 TMT1-5 149.33 83.867 92.261 108.23 91.508 72.755 84.008 106.33 87 109 94 73 87 102 1 1 1 1 1 1 10575 20427 645 20178 31385 40551 40551 1 VVSQYSSLLSPMSVNAVMK Unmodified 2039.0431 0.043133728 1233 P50991-2;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 0 9 0 1 75.731 75.731 3 6.3903E-10 21901 TMT1-8 85.203 62.4 30.687 35.529 42.238 44.94 33.758 53.403 29 36 43 44 36 51 1 1 1 1 1 1 7786.9 20428 1233 20179 31386 40552 40552 1 VVSSIEQK Unmodified 888.49165 0.49164694 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 0 5.2 2.32 1 1 2 1 43.836 43.836 2 1.2559E-26 11728 TMT1-4 210.26 131.14 7158.8 9547.7 7822.7 6713.4 7683.5 10311 6760 9550 8069 6701 7979 9878 9 9 9 9 9 9 1663000 20429 1471 20180 31387;31388;31389;31390;31391 40553;40554;40555;40556;40557;40558;40559;40560;40561 40556 9 VVSSIEQKTEGAEK Unmodified 1503.7781 0.77805214 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 1 5 0 1 49.328 49.328 3 0.00016269 13705 TMT1-4 86.539 71.844 138.29 171.87 235.89 141.08 178.05 200.66 131 174 234 145 183 193 1 1 1 1 1 1 19478 20430 1471 20181 31392 40562 40562 1 VVSSSIVDK Unmodified 932.51786 0.51786169 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 6 0 1 47.692 47.692 2 0.00056444 13218 TMT1-5 134.26 86.391 276.9 399.65 371.83 264.72 379.59 501.91 262 399 378 269 391 481 2 2 2 2 2 2 16188 20431 1437 20182 31393 40563;40564 40564 2 VVSSVAGLMLFVSR Unmodified 1463.817 0.8170206 2707 Q9NQ75;Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 yes no 0 0 0 0 0 9 0 1 84.835 84.835 2 0.00055453 25446 TMT1-8 76.255 50.138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20432 2707 20183 31394 40565 40565 1 VVSSVLQLGNIVFK Unmodified 1501.8868 0.88681473 1029 P35749-4;P35749-3;P35749;P35749-2 MYH11 Myosin-11 yes no 0 0 0 0 0 9 0 1 86.79 86.79 3 0.029773 26212 TMT1-8 41.996 21.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20433 1029 20184 31395 40566 40566 1 VVSVLTVLHQDWLNGK Unmodified 1806.9992 0.99921872 420;422 P0DOX5;P01857;P01860 IGHG1;IGHG3 Ig gamma-1 chain C region;Ig gamma-3 chain C region no no 0 0 0 0 0 8.5 0.5 1 1 78.469 78.469 3 9.073E-12 22667 TMT1-8 116.58 96.305 183.53 302.2 276.47 215.42 280.83 367.22 174 300 282 217 290 352 3 3 3 3 3 3 107270 20434 420;422 20185 31396;31397 40567;40568;40569 40568 3 VVSVLTVVHQDWLNGK Unmodified 1792.9836 0.98356866 421 P01859 IGHG2 Ig gamma-2 chain C region yes yes 0 0 0 0 0 9 0 1 72.451 72.451 3 6.1367E-08 20688 TMT1-8 97.949 73.095 30.629 35.369 52.021 19.856 57.946 52.713 29 36 51 22 58 51 1 1 1 1 1 1 5362 20435 421 20186 31398 40570 40570 1 VVSVLTVVHQDWLNGKEYK Unmodified 2213.1845 0.18445331 421 P01859 IGHG2 Ig gamma-2 chain C region yes yes 0 0 0 0 1 8 0 1 68.943 68.943 4 0.0023911 21114 TMT1-7 52.612 33.827 99.931 123.27 51.925 65.798 114.44 112.93 94 123 58 65 116 109 1 1 1 1 1 1 12112 20436 421 20187 31399 40571 40571 1 VVTATLWGEDADKFDGSR Unmodified 1965.9432 0.94321999 913 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 1 6 0 1 63.106 63.106 3 0.001393 19302 TMT1-5 61.648 43.633 99.784 115.3 83.444 73.379 76.394 114.01 94 116 87 73 80 109 1 1 1 1 1 1 13452 20437 913 20188 31400 40572 40572 1 VVTCAHR Unmodified 841.42286 0.42285587 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 21.994 21.994 3 0.0020587 3768 TMT1-5 107.32 49.854 15.825 24.052 24.927 13.468 18.505 21.858 15 24 25 14 19 21 2 2 2 2 2 2 1656.7 20438 856 20189 31401 40573;40574 40573 2 VVTDTDETELAR Unmodified 1347.6518 0.65178899 492 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 0 2 0 1 45.187 45.187 2 3.0924E-34 12991 TMT1-1 216.26 193.57 123.47 98.809 83.315 95.813 104.37 152.66 116 102 87 94 109 146 2 2 2 2 2 2 32847 20439 492 20190 31402 40575;40576 40575 2 VVTFAGHLQR Unmodified 1126.6247 0.6247268 1914 Q17RC7 EXOC3L4 Exocyst complex component 3-like protein 4 yes yes 0 0 0 0 0 9 0 1 41.94 41.94 3 0.020201 8738 TMT1-8 52.725 29.654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20440 1914 20191 31403 40577 40577 1 VVTLYPYTSQK Unmodified 1297.6918 0.69180331 2826 Q9P2A4-2;Q9P2A4 ABI3 ABI gene family member 3 yes no 0 0 0 0 0 8 0 1 58.175 58.175 2 1.574E-08 16835 TMT1-7 123.75 39.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20441 2826 20192 31404 40578 40578 1 VVTMEVEAR Unmodified 1032.5274 0.52738052 2495 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 0 4 0 1 45.687 45.687 2 0.013432 12556 TMT1-3 84.213 40.398 160.1 325.88 227.66 188.99 213.8 313.7 152 320 237 189 223 300 1 1 1 1 1 1 19000 20442 2495 20193 31405 40579 40579 1 VVTPLSPPTNLHLEANPDTGVLTVSWER Unmodified 3041.5822 0.58219987 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 7 0 2 75.04 75.04 3;4 2.5482E-06 23380 TMT1-6 64.701 59.691 39.221 44.795 42.742 44.471 57.07 45.275 37 44 44 44 58 44 2 1 2 2 2 2 14839 20443 442 20194 31406;31407 40580;40581 40580 2 VVTRHPDLK Unmodified 1063.6138 0.61382777 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 1 7 0 1 32.093 32.093 4 0.0099851 6486 TMT1-6 68.657 24.953 85.052 102.02 45.963 59.905 39.87 99.066 80 102 51 58 44 94 1 1 1 1 1 1 4445.1 20444 475 20195 31408 40582 40582 1 VVTTPAFMCETALHYIHDGIGAMVR Unmodified 2788.3499 0.34989721 0 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 0 8 0 1 78.2 78.2 4 0.027003 24644 TMT1-7 31.18 17.992 54.421 26.716 28.138 30.599 27.344 46.124 51 29 29 30 29 44 1 1 1 1 1 1 3662.5 20445 0 20196 31409 40583 40583 1 VVTVFSVADGYSENNVFYGHHAK Unmodified 2539.2132 0.21318726 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 7 0 2 61.672 61.672 4;5 3.4342E-29 18089 TMT1-6 132.13 112.26 269.53 325.91 230.03 171.93 241.4 263.88 254 327 239 174 247 254 2 2 2 2 2 2 198840 20446 250 20197 31410;31411 40584;40585 40584 2 VVTVGQFK Unmodified 876.5069 0.50690308 2841 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 0 8.67 0.471 1 2 52.65 52.65 2 0.0066197 12700 TMT1-8 107.29 75.334 77.563 78.856 61.87 74.921 62.743 52.576 73 80 65 73 65 51 1 1 1 1 1 1 10218 20447 2841 20198 31412;31413;31414 40586;40587;40588 40587 3 VVTVHLEK Unmodified 923.54402 0.54401687 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 7 0 1 44.616 44.616 2 0.0057253 11404 TMT1-6 114.89 31.517 46.444 96.089 47.598 35.582 49.38 67.881 44 94 51 36 51 65 1 1 1 1 1 1 5746.3 20448 2956 20199 31415 40589 40589 1 VVTYGMANLLTGPK Unmodified 1462.7854 0.78538612 2471 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 0 9 0 1 70.15 70.15 2 1.9737E-06 19736 TMT1-8 106.26 74.827 38.435 13.009 21.492 30.034 20.334 37.796 36 15 22 29 22 36 1 1 1 1 1 1 5353.6 20449 2471 20200 31416 40590 40590 1 VVVAENFDEIVNNENK Unmodified 1831.8952 0.89520716 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 4.5 0.5 1 1 66.295 66.295 3 1.8609E-23 20671 TMT1-3 168.5 132.69 137.41 203.76 177.2 128.46 163.08 165.91 130 203 181 130 167 160 3 3 3 3 3 3 52800 20450 955 20201 31417;31418 40591;40592;40593 40591 3 VVVCDNGTGFVK Unmodified 1293.6387 0.63872189 1380 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 0 7 0 1 53.604 53.604 3 7.6054E-05 14945 TMT1-6 77.593 52.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20451 1380 20202 31419 40594 40594 1 VVVFIKPTCPYCR Unmodified 1637.8422 0.8421895 1030 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 0 1 9 0 1 56.403 56.403 3 1.5813E-05 14300 TMT1-8 93.959 69.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20452 1030 20203 31420 40595 40595 1 VVVGAPQEIVAANQR Unmodified 1549.8576 0.85763986 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6 0 1 52.555 52.555 3 0.00084959 15183 TMT1-5 70.165 53.222 92.206 108.07 100.93 55.764 85.852 75.368 87 109 102 58 87 73 1 1 1 1 1 1 16031 20453 647 20204 31421 40596 40596 1 VVVHPLVLLSVVDHFNR Unmodified 1942.1153 0.11525153 1251 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 0 9 0 1 71.03 71.03 4 2.2928E-07 20075 TMT1-8 76.82 69.096 46.727 65.576 25.893 29.515 33.954 68.321 44 65 29 29 36 65 1 1 1 1 1 1 8616.9 20454 1251 20205 31422 40597 40597 1 VVVLGLLPR Unmodified 964.64334 0.64333698 1828 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 0 9 0 1 69.358 69.358 2 0.0018802 19380 TMT1-8 110.34 100.35 92.145 124.09 97.53 110.54 147.95 173.8 87 124 102 109 152 167 2 2 2 2 2 2 14218 20455 1828 20206 31423 40598;40599 40598 2 VVVLGSGGVGK Unmodified 970.58113 0.58113065 1385 P61225 RAP2B Ras-related protein Rap-2b no no 0 0 0 0 0 9 0 2 52.365 52.365 2;3 0.0015039 12702 TMT1-8 89.886 37.17 491.24 613.41 595.62 515.35 465.97 727.57 464 617 608 512 492 695 3 3 3 3 3 3 63554 20456 1385 20207 31424;31425 40600;40601;40602 40602 3 VVVPPLPGK Unmodified 904.57459 0.57458871 223 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 0 9 0 1 58.778 58.778 2 0.0016717 15206 TMT1-8 119.57 110.33 177.17 201.23 168.48 153.06 161.44 180.88 167 203 174 152 167 174 2 2 2 2 2 2 39925 20457 223 20208 31426 40603;40604 40603 2 VVVSGGR Unmodified 672.39187 0.39187332 693 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 0 6 0 2 28.97 28.97 2 0.015376 5645 TMT1-5 101.21 101.21 138.78 189.42 138.62 139.23 177.74 181.48 131 189 145 138 182 175 2 2 2 2 2 2 19322 20458 693 20209 31427;31428 40605;40606 40605 2 VVVSGLPPSGSWQDLK Unmodified 1667.8883 0.88827129 1615 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 0 8 0 2 67.943 67.943 3;4 1.5831E-11 20619 TMT1-7 119.65 99.371 480.16 588.17 495.01 525.84 575.83 499.51 453 591 514 518 590 484 4 4 4 4 4 4 32996 20459 1615 20210 31429;31430 40607;40608;40609;40610 40608 4 VVVTMEHSAK Unmodified 1099.5696 0.56957969 1326 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 0 6 0 1 39.427 39.427 3 0.0010796 9985 TMT1-5 90.685 66.834 122.92 159.86 125.25 140.89 131.63 181.73 116 160 131 138 138 174 1 1 1 1 1 1 22297 20460 1326 20211 31431 40611 40611 1 VVVTVEQTEEELER Unmodified 1658.8363 0.8362953 139 O15269 SPTLC1 Serine palmitoyltransferase 1 yes yes 0 0 0 0 0 2 0 1 64.972 64.972 3 1.3555E-07 20712 TMT1-1 110.98 87.623 15.855 21.975 21.751 14.688 21.809 15.368 15 22 22 15 22 15 1 1 1 1 1 1 6192.2 20461 139 20212 31432 40612 40612 1 VVVVDDLLATGGTMNAACELLGR Unmodified 2373.2032 0.2032162 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 0 0 0 6 0 2 87.453 87.453 3 6.8032E-22 28762 TMT1-5 102.61 88.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20462 541 20213 31433;31434 40613;40614 40613 2 VVVVGDQSAGK Unmodified 1057.5768 0.57677356 220 O60313-13;O60313;O60313-9;O60313-11;O60313-2;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 0 6 0 1 44.711 44.711 3 0.0064358 12064 TMT1-5 65.627 39.819 122.45 217.92 154.3 115.11 132.01 205.17 116 215 160 116 138 196 1 1 1 1 1 1 11925 20463 220 20214 31435 40615 40615 1 VVVVQAISALCQK Unmodified 1413.8014 0.80137054 3047;2838 Q9Y678;Q9UBF2;Q9UBF2-2 COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma-2 no no 0 0 0 0 0 9 0 1 71.135 71.135 2 5.1503E-09 20096 TMT1-8 118.9 87.831 23.197 28.548 44.501 28.671 19.847 53.8 22 29 44 29 22 51 1 1 1 1 1 1 3906.1 20464 3047;2838 20215 31436 40616 40616 1 VVVVTGANTGIGK Unmodified 1213.703 0.7030367 2246 Q8TC12;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 0 8 0 1 52.715 52.715 2 4.1999E-21 14649 TMT1-7 184.03 125.05 93.136 100.05 131.72 79.788 106.46 113.16 88 102 131 80 109 109 2 2 2 1 2 2 36990 20465 2246 20216 31437 40617;40618 40617 2 VVVYLQK Unmodified 847.51674 0.51673948 1288 P53634;P53634-2;P53634-3 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes no 0 0 0 0 0 9 0 1 55.247 55.247 2 0.0079286 13807 TMT1-8 138.75 80.168 207.64 313.85 182.56 216.23 186.77 241.98 196 311 196 211 196 232 2 2 2 2 2 2 33898 20466 1288 20217 31438 40619;40620 40619 2 VVVYSNTIQSIIAIIR Unmodified 1788.0509 0.050919944 577 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 0 9 0 1 89.564 89.564 3 0.00027634 27219 TMT1-8 61.732 49.755 15.955 0 46.61 20.588 36.181 45.872 15 0 44 22 37 44 1 0 2 2 2 2 4280.9 20467 577 20218 31439 40621;40622 40621 2 VVYLEHVVVR Unmodified 1211.7026 0.70264277 933 P29122-2;P29122-8;P29122;P29122-7;P29122-6;P29122-5;P29122-4 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 0 0 0 0 0 7 0 1 52.017 52.017 3 3.4315E-05 14315 TMT1-6 131.28 90.001 37.899 89.227 46.972 59.83 40.643 76.658 36 87 51 58 44 73 1 1 1 1 1 1 14940 20468 933 20219 31440 40623 40623 1 VVYNVLSELEK Unmodified 1291.7024 0.702368 863 P23497;P23497-7;P23497-6;P23497-5;P23497-2;P23497-3;P23497-4;Q9H930-3;Q9H930-1;Q9H930-2;Q9H930 SP100;SP140L Nuclear autoantigen Sp-100;Nuclear body protein SP140-like protein yes no 0 0 0 0 0 6 0 1 77.191 77.191 3 9.198E-05 24824 TMT1-5 103.34 79.737 54.25 73.729 17.038 46.453 33.138 69.41 51 73 22 44 36 66 1 1 1 1 1 1 4767.7 20469 863 20220 31441 40624 40624 1 VVYTPESLYK Unmodified 1197.6281 0.62814043 1628 Q08AF3 SLFN5 Schlafen family member 5 yes yes 0 0 0 0 0 7 0 1 57.88 57.88 3 0.0017918 16631 TMT1-6 85.377 59.992 61.399 94.873 59.994 97.307 98.878 97.382 58 94 65 94 102 94 1 1 1 1 1 1 7782.3 20470 1628 20221 31442 40625 40625 1 VWAEYALK Unmodified 978.51747 0.51746776 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 8 0 1 63 63 2 0.010962 18701 TMT1-7 98.523 52.395 77.221 93.014 107.38 102.96 112.98 105.51 73 94 109 102 116 102 1 1 1 1 1 1 10343 20471 2028 20222 31443 40626 40626 1 VWAHYEEQPVEEVMPVLEEK Unmodified 2440.1621 0.16206289 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 4 0 1 70.268 70.268 3 1.3918E-13 22238 TMT1-3 88.565 71.417 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20472 2071 20223 31444 40627 40627 1 VWCVASLRGSNNVALGYDEGSIIVK Unmodified 2706.3799 0.37993501 1021 P35606-2;P35606 COPB2 Coatomer subunit beta' yes no 0 0 0 0 1 7 0 1 91.692 91.692 4 0.04725 29737 TMT1-6 29.47 15.826 37.962 34.36 82.826 33.255 61.518 52.611 36 36 80 36 62 51 1 1 1 1 1 1 19852 20473 1021 20224 31445 40628 40628 1 VWDDGIIDPADTR Unmodified 1471.6943 0.69432251 2689 Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 0 3 0 1 64.837 64.837 2 0.00030102 21099 TMT1-2 75.78 50.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20474 2689 20225 31446 40629 40629 1 VWDLAQQVVLSSYR Unmodified 1662.873 0.87295558 2509 Q9BQA1 WDR77 Methylosome protein 50 yes yes 0 0 0 0 0 9 0 1 80.809 80.809 2 0.00029287 23885 TMT1-8 79.492 44.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20475 2509 20226 31447 40630 40630 1 VWDLFPEADK Unmodified 1218.5921 0.59208927 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 0 6 0 1 75.215 75.215 3 0.0065195 24121 TMT1-5 68.893 43.272 30.731 44.288 27.269 29.117 50.74 36.928 29 44 29 29 51 36 1 1 1 1 1 1 2713.8 20476 2476 20227 31448 40631 40631 1 VWDLFPEADKVR Unmodified 1473.7616 0.76161421 2476 Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 1 7 0 1 68.029 68.029 3 0.00029486 20616 TMT1-6 94.122 72.564 99.458 145.69 112.43 86.291 111.62 167.37 94 145 116 87 116 160 1 1 1 1 1 1 14430 20477 2476 20228 31449 40632 40632 1 VWDPDNPLTDR Unmodified 1326.6204 0.62042929 324 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 0 0 4 0 1 60.047 60.047 2 0.00053713 18255 TMT1-3 103.01 77.112 68.911 63.064 86.718 73.735 47.076 83.937 65 65 87 73 51 80 1 1 1 1 1 1 15685 20478 324 20229 31450 40633 40633 1 VWDSVTLSTLQIIGLGTFER Unmodified 2234.1947 0.19468365 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 9 0 1 98.87 98.87 3 2.1968E-19 30620 TMT1-8 118.96 96.138 0 46.609 12.407 23.051 13.583 30.526 0 44 15 22 15 29 0 1 1 1 1 1 4864.1 20479 2687 20230 31451 40634 40634 1 VWDVIGR Unmodified 843.46029 0.46028724 98 O14618 CCS Copper chaperone for superoxide dismutase yes yes 0 0 0 0 0 7 0 1 59.473 59.473 2 0.0071055 17304 TMT1-6 130.05 59.526 177.4 162.99 163.55 145.24 186.12 203.62 167 167 167 145 191 196 1 1 1 1 1 1 31225 20480 98 20231 31452 40635 40635 1 VWGVPIPVFHHK Unmodified 1414.7874 0.78737546 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 9 0 1 59.106 59.106 4 0.00047583 15400 TMT1-8 76.143 54.913 107.97 152.46 118.81 102.85 82.624 106.37 102 152 123 102 87 102 1 1 1 1 1 1 8105.6 20481 2741 20232 31453 40636 40636 1 VWINTSDIILVGLR Unmodified 1597.9192 0.91917749 96 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 0 0 9 0 1 83.91 83.91 3 4.6159E-11 25035 TMT1-8 121.56 93.645 46.436 89.59 54.458 60.344 47.692 83.919 44 88 58 59 51 80 2 2 2 2 2 2 6706 20482 96 20233 31454 40637;40638 40637 2 VWIPDPEEVWK Unmodified 1396.7027 0.70270235 3016 Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3;Q9NQX4-2;Q9NQX4 MYO5A;MYO5C Unconventional myosin-Va;Unconventional myosin-Vc yes no 0 0 0 0 0 6 0 1 78.294 78.294 3 0.0044724 25247 TMT1-5 69.979 43.01 30.715 28.053 43.773 44.833 34.569 29.928 29 29 44 44 36 29 1 1 1 1 1 1 4342.9 20483 3016 20234 31455 40639 40639 1 VWNLANCK Unmodified 1003.4909 0.49093544 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 9 0 1 55.176 55.176 2 0.0069988 13757 TMT1-8 102.72 34.962 99.599 114.79 114.96 71.055 100.08 97.348 94 116 116 73 102 94 1 1 1 1 1 1 30460 20484 1478 20235 31456 40640 40640 1 VWPHKDYPLIPVGK Unmodified 1647.9137 0.91369818 457 P04040 CAT Catalase yes yes 0 0 0 0 1 9 0 1 57.204 57.204 4 0.00073808 14579 TMT1-8 69.714 44.86 415.81 738.55 542.66 426.85 515.72 706.97 394 729 562 429 535 677 2 2 2 2 2 2 45493 20485 457 20236 31457 40641;40642 40641 2 VWQLQDLSFQTAAR Unmodified 1661.8526 0.85255449 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 8 0 1 71.102 71.102 3 0.00017008 21964 TMT1-7 80.371 68.347 46.743 42.954 42.453 52.585 33.406 53.413 44 44 44 51 36 51 1 1 1 1 1 1 19867 20486 2789 20237 31458 40643 40643 1 VWQVTIGTR Unmodified 1058.5873 0.58727866 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 9 0 1 56.159 56.159 2 0.0012647 14250 TMT1-8 125.82 81.05 246.02 295.42 239.28 202.14 291.04 300.83 232 297 247 203 297 290 2 2 2 2 2 2 40655 20487 1478 20238 31459 40644;40645 40645 2 VWSPLVTEEGK Unmodified 1243.6449 0.64485312 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 0 6.5 0.5 1 1 62.079 62.079 2;3 3.2606E-23 18890 TMT1-5 195.36 132.81 348.64 385.5 228.84 279.33 229.87 456.08 328 388 246 272 247 434 2 2 2 2 2 2 62761 20488 41 20239 31460;31461 40646;40647 40646 2 VWSPLVTEEGKR Unmodified 1399.746 0.74596415 41 O00151 PDLIM1 PDZ and LIM domain protein 1 yes yes 0 0 0 0 1 7 0 1 52.274 52.274 3 0.0008706 14478 TMT1-6 84.053 58.58 624.28 926.29 691.71 496.42 703.08 854.06 590 921 714 504 722 820 1 1 1 1 1 1 183800 20489 41 20240 31462 40648 40648 1 VWYHVCSSR Unmodified 1192.5448 0.54476192 2291 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 0 9 0 1 39.224 39.224 3 0.035661 7868 TMT1-8 43.185 12.111 45.473 65.146 56.673 43.67 55.531 91.157 43 65 58 44 58 87 1 1 1 1 1 1 2333.9 20490 2291 20241 31463 40649 40649 1 VWYVSNIDGTHIAK Unmodified 1601.8202 0.82019173 516 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 0 8.33 0.471 2 1 58.019 58.019 3;4 7.9214E-15 16752 TMT1-7 136.17 124.25 706.24 840.17 1057.4 724.78 943.3 1107.3 668 851 1057 737 970 1064 5 5 5 5 5 5 172040 20491 516 20242 31464;31465;31466 40650;40651;40652;40653;40654 40652 5 VYACEVTHQGLSSPVTK Unmodified 1874.9196 0.91964777 418 P01834;P0DOX7 IGKC Ig kappa chain C region yes no 0 0 0 0 0 7.33 0.943 1 2 47.52 47.52 3;4 6.5475E-25 12650 TMT1-7 151.62 126.46 314.98 482.9 393.92 332.49 425.53 444.11 298 480 406 333 436 428 3 3 3 3 3 3 60135 20492 418 20243 31467;31468;31469 40655;40656;40657 40656 3 VYAILTHGIFSGPAISR Unmodified 1800.9887 0.98865404 661;1360 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 0 9 0 1 70.058 70.058 3 1.278E-13 19702 TMT1-8 99.915 76.191 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20493 661;1360 20244 31470 40658 40658 1 VYALPEDLVEVNPK Unmodified 1584.8399 0.83992412 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 4 2.16 1 1 1 70.663 70.663 3 9.4311E-15 22111 TMT1-4 135.02 123.1 965.62 1883.5 1121.9 1001.1 1329.4 1587.7 915 1849 1187 1000 1367 1525 6 6 6 6 6 6 338600 20494 690 20245 31471;31472;31473 40659;40660;40661;40662;40663;40664 40661 6 VYCDMNTENGGWTVIQNR Unmodified 2155.9415 0.9415222 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.5 0.5 1 1 60.311 60.311 3 1.139E-19 18067 TMT1-4 138.77 129.49 131.41 197.86 108.78 118.46 155.96 173.57 124 196 117 117 160 167 2 2 2 2 2 2 41750 20495 438 20246 31474;31475 40665;40666 40665 2 VYDEEVEEPVLK Unmodified 1447.7082 0.70824124 2000 Q9Y4E1-5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1;Q641Q2-2;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 0 0 0 0 0 2 0 1 58.429 58.429 3 0.00087095 18252 TMT1-1 78.692 65.264 0 30.627 13.722 15.044 28.353 37.567 0 29 15 15 29 36 0 1 1 1 1 1 2642.7 20496 2000 20247 31476 40667 40667 1 VYDQTNPYTDVR Unmodified 1469.6787 0.67867245 2940 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 0 3 0 1 46.287 46.287 2 0.016687 13823 TMT1-2 68.536 49.293 31.903 13.189 37.051 21.3 28.578 22.637 30 15 36 22 29 22 1 1 1 1 1 1 4547 20497 2940 20248 31477 40668 40668 1 VYDSVLALSTEVQAAR Unmodified 1720.8996 0.89956426 77 O00501 CLDN5 Claudin-5 yes yes 0 0 0 0 0 5.5 0.5 1 1 72.614 72.614 3 1.0201E-06 23107 TMT1-5 96.993 68.017 77.422 101.13 66.714 106.23 68.067 99.328 73 101 72 102 73 95 2 2 2 2 2 2 11133 20498 77 20249 31478;31479 40669;40670;40671 40671 3 VYDVLVLK Unmodified 947.56917 0.56916898 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 0 7.5 0.5 1 1 68.082 68.082 2 0.00096559 20618 TMT1-6 146.35 99.787 975.42 962.75 976.36 624.35 728.59 1310.6 919 982 986 637 767 1249 3 3 3 3 3 3 169300 20499 1969 20250 31480;31481 40672;40673;40674 40672 3 VYEDSGIPLPAESPK Unmodified 1600.7985 0.79845323 2148 Q8IXM2-2;Q8IXM2;Q8IXM2-3 BAP18 Chromatin complexes subunit BAP18 yes no 0 0 0 0 0 4 0 1 60.289 60.289 3 1.6669E-05 18327 TMT1-3 91.207 69.366 38.062 74.572 31.941 52.65 63.254 67.485 36 73 36 51 65 65 1 1 1 1 1 1 8646.9 20500 2148 20251 31482 40675 40675 1 VYEGERPLTK Unmodified 1190.6295 0.62953741 640 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 1 5 0 1 39.137 39.137 3 0.0013778 9666 TMT1-4 94.465 76.657 2493.6 3281 2821.8 2077.6 2748.1 2969.3 2355 3286 2887 2102 2816 2859 1 1 1 1 1 1 309770 20501 640 20252 31483 40676 40676 1 VYEILPTFDVLHFK Unmodified 1719.9236 0.92359416 2446 Q96RD7-2;Q96RD7 PANX1 Pannexin-1 yes no 0 0 0 0 0 8 0 1 80.722 80.722 3 1.9148E-05 25677 TMT1-7 94.09 85.381 99.585 130.94 103.59 134.39 139.26 181.51 94 131 109 131 145 174 2 2 2 2 2 2 13663 20502 2446 20253 31484 40677;40678 40677 2 VYEIQDIYENSWTK Unmodified 1786.8414 0.84138068 2953 Q9Y262-2;Q9Y262 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 0 6 0 1 71.705 71.705 3 2.5318E-07 22700 TMT1-5 105.78 95.797 61.4 72.211 79.034 64.742 84.67 97.788 58 73 80 65 87 94 1 1 1 1 1 1 15577 20503 2953 20254 31485 40679 40679 1 VYENYPTYDLTER Unmodified 1661.7573 0.7573167 1028 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 0 3.5 0.5 1 1 55.876 55.876 3 0.0007251 17550 TMT1-2 77.527 48.224 54.018 73.084 56.575 34.21 93.916 82.6 51 73 58 36 94 80 1 1 1 1 1 1 17583 20504 1028 20255 31486;31487 40680;40681 40680 2 VYFAGFPR Unmodified 955.49159 0.49158736 529 P07225 PROS1 Vitamin K-dependent protein S yes yes 0 0 0 0 0 9 0 1 59.896 59.896 2 0.0071489 15717 TMT1-8 105.22 66.979 240.92 229.61 250.54 257.18 235.06 273.65 227 235 256 253 245 263 1 1 1 1 1 1 38392 20505 529 20256 31488 40682 40682 1 VYGALMWSLGK Oxidation (M) 1239.6322 0.63217995 2654;2802;2622 Q9H4M9;Q9NZN3;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 1 0 0 9 0 1 69.163 69.163 3 0.019444 19324 TMT1-8 57.492 40.86 30.637 35.392 50.597 51.798 49.404 45.494 29 36 51 51 51 44 1 1 1 1 1 1 6365.4 20506 2654;2802;2622 20257 31489 40683 40683 302 1 VYGALMWSLGK Unmodified 1223.6373 0.63726532 2654;2802;2622 Q9H4M9;Q9NZN3;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 0 0 0 9 0 2 75.885 75.885 2;3 6.6243E-08 21952 TMT1-8 135.71 26.699 222.97 340.83 288.77 247.24 293.63 378.58 211 339 297 247 304 363 2 2 2 2 2 2 84975 20507 2654;2802;2622 20257 31490;31491 40684;40685 40684 2 VYGEPHR Unmodified 856.41915 0.4191507 357 O95486;O95486-2 SEC24A Protein transport protein Sec24A yes no 0 0 0 0 0 3 0 1 25.451 25.451 3 0.047642 5593 TMT1-2 50.039 7.0393 30.711 28.041 44.501 28.513 28.246 22.646 29 29 44 29 29 22 1 1 1 1 1 1 1476.9 20508 357 20258 31492 40686 40686 1 VYGPGVAK Unmodified 789.43849 0.43848916 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 7.5 0.5 1 1 42.288 42.288 2 0.00098019 10498 TMT1-6 146.21 87.231 2713.3 2740.1 3675 2281 3060.4 3898.4 2562 2805 3655 2340 3154 3739 5 5 5 5 5 5 806770 20509 831 20259 31493;31494 40687;40688;40689;40690;40691 40687 5 VYGSFLVNPESGYNVSLLYDLENLPASK Unmodified 3087.5441 0.54408303 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 7.67 0.471 1 2 92.818 92.818 4;5 1.095E-12 30132 TMT1-6 90.712 85.734 278.82 354.45 267.23 220.31 224.69 289.94 263 355 277 220 234 278 7 7 7 7 7 7 99477 20510 129 20260 31495;31496;31497 40692;40693;40694;40695;40696;40697;40698 40693 7 VYGVIPK Unmodified 774.46398 0.46397563 83 O00584 RNASET2 Ribonuclease T2 yes yes 0 0 0 0 0 8 0 1 52.393 52.393 2 0.028664 14506 TMT1-7 91.26 26.394 122.08 269.78 172.28 200.29 195.05 235.35 116 264 183 196 203 226 1 1 1 1 1 1 28049 20511 83 20261 31498 40699 40699 1 VYIASSSGSTAIK Unmodified 1282.6769 0.67688153 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 0 7.5 0.5 1 1 49.291 49.291 2;3 3.3842E-13 13232 TMT1-7 156.69 129.28 817.72 892.49 850.97 636.98 744.59 858.2 771 904 866 642 768 825 3 3 3 3 3 3 138980 20512 269 20262 31499;31500 40700;40701;40702 40701 3 VYIASSSGSTAIKK Unmodified 1410.7718 0.77184455 269 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 0 0 0 0 1 9 0 1 45.314 45.314 3 2.3389E-10 9937 TMT1-8 121.45 88.715 138.97 157.55 134.65 101.22 119.06 174.62 131 159 138 102 124 167 2 2 2 2 2 2 15051 20513 269 20263 31501 40703;40704 40703 2 VYIGSFWSHPLLIPDNR Unmodified 2013.0472 0.047231549 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 0 9 0 1 74.102 74.102 3 4.6529E-14 21226 TMT1-8 112.5 93.668 108.28 106.9 106.05 110.58 118.64 143.72 102 109 109 109 123 138 2 2 2 2 2 2 49695 20514 2654;2802 20264 31502 40705;40706 40705 2 VYIGSFWSHPLLIPDNRK Unmodified 2141.1422 0.14219457 2654;2802 Q9H4M9;Q9NZN3 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 no no 0 0 0 0 1 9 0 1 67.33 67.33 4 4.8274E-11 18586 TMT1-8 104.21 88.033 107.11 138.02 94.823 126.56 118.66 152.25 101 138 101 123 124 146 2 2 2 2 2 2 19515 20515 2654;2802 20265 31503 40707;40708 40707 2 VYINYYDMNAANVGWNNSTFA Unmodified 2426.0637 0.063745829 698 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 0 0 6.5 0.5 1 1 86.863 86.863 3 3.4906E-06 27561 TMT1-6 77.023 69.747 92.386 92.385 83.853 95.909 97.586 136.86 87 94 87 94 102 131 3 3 3 3 3 3 33810 20516 698 20266 31504;31505 40709;40710;40711 40711 3 VYIVHGVQEDLR Unmodified 1426.7569 0.75686319 1814 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 0 5 0 1 47.826 47.826 3 3.946E-05 13147 TMT1-4 80.871 60.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20517 1814 20267 31506 40712 40712 1 VYLFLQPR Unmodified 1034.5913 0.59130141 565 P08514;P08514-2;P08514-3 ITGA2B Integrin alpha-IIb;Integrin alpha-IIb heavy chain;Integrin alpha-IIb light chain, form 1;Integrin alpha-IIb light chain, form 2 yes no 0 0 0 0 0 5 4 1 1 66.409 66.409 2 0.0067857 17985 TMT1-8 99.171 60.932 353.47 400.93 304.68 231.42 270.71 305.68 333 404 315 233 279 294 3 3 3 3 3 3 861970 20518 565 20268 31507;31508 40713;40714;40715 40714 3 VYLFTIK Unmodified 882.52149 0.52149051 758 P17301 ITGA2 Integrin alpha-2 yes yes 0 0 0 0 0 9 0 1 68.183 68.183 2 0.01537 18974 TMT1-8 97.602 48.505 572.75 902.37 1438.8 814.07 1263.4 1292.2 546 907 1416 845 1286 1246 1 1 1 1 1 1 51310 20519 758 20269 31509 40716 40716 1 VYLGDIPLK Unmodified 1016.5906 0.59063271 1994 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 0 7 0 1 66.891 66.891 2 0.0044353 20205 TMT1-6 99.442 52.876 61.491 72.466 63.398 51.039 49.183 52.963 58 73 65 51 51 51 1 1 1 1 1 1 6381.3 20520 1994 20270 31510 40717 40717 1 VYLHCTNTDNPR Unmodified 1488.678 0.67796094 2951 Q9Y251-2;Q9Y251;Q9Y251-3 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 0 6.5 1.5 1 1 32.563 32.563 3 2.4861E-05 6770 TMT1-7 103.91 95.596 99.648 114.92 106.69 86.47 120.3 127.69 94 116 109 87 123 123 2 2 2 2 2 2 15626 20521 2951 20271 31511;31512 40718;40719 40719 2 VYNDGEQIIAQGDSADSFFIVESGEVK Unmodified 2916.3665 0.3665126 974 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 0 4 0 1 78.393 78.393 4 0.00073833 25416 TMT1-3 44.301 31.499 23.368 21.469 21.737 14.837 13.96 30.516 22 22 22 15 15 29 1 1 1 1 1 1 5054 20522 974 20272 31513 40720 40720 1 VYNEAGVTFT Unmodified 1099.5186 0.51858998 387 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 0 4 0 1 61.174 61.174 2 0.0016987 18738 TMT1-3 101.72 88.668 131.71 144.75 102.26 142.09 140.76 158.02 124 146 109 138 146 152 2 2 2 2 2 2 51932 20523 387 20273 31514 40721;40722 40722 2 VYNIEFNPPK Unmodified 1219.6237 0.62372375 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 7 0 1 60.093 60.093 3 0.019523 17386 TMT1-6 55.401 31.972 61.505 80.058 54.706 65.913 99.515 120.82 58 80 58 65 102 116 1 1 1 1 1 1 40673 20524 2881 20274 31515 40723 40723 1 VYPSSLSK Unmodified 879.47018 0.47018322 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 0 8 0 1 46.516 46.516 2 0.031867 12204 TMT1-7 80.438 30.312 84.818 92.738 93.249 55.375 130.88 105 80 94 94 58 131 102 1 1 1 1 1 1 18926 20525 2116 20275 31516 40724 40724 1 VYQGLYCVAIR Unmodified 1340.6911 0.69109181 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 8 0 1 60.093 60.093 2 0.0001603 17588 TMT1-7 86.205 56.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20526 1810 20276 31517 40725 40725 1 VYQGPAK Unmodified 761.40719 0.40718903 1250 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 0 6.5 0.5 1 1 37.303 37.303 2 0.0011553 8660 TMT1-6 97.596 49.681 130.3 166.56 140.37 131.75 162.93 165.91 123 167 145 131 167 160 1 1 1 1 1 1 13597 20527 1250 20277 31518;31519 40726;40727 40727 2 VYQSLCPTSWVTDWDEQR Unmodified 2269.011 0.010981977 712 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 0 6 0 1 76.627 76.627 3 3.7232E-14 24580 TMT1-5 119.8 114.47 68.783 110.2 68.365 82.227 60.522 137.92 65 109 73 80 66 131 2 2 2 2 2 2 52292 20528 712 20278 31520 40728;40729 40728 2 VYRDDIGR Unmodified 992.50394 0.50394297 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 1 3 0 1 31.44 31.44 3 0.0087892 7883 TMT1-2 85.161 48.714 77.386 85.917 85.722 64.349 84.395 106.32 73 87 87 65 87 102 1 1 1 1 1 1 7714.4 20529 2387 20279 31521 40730 40730 1 VYREELK Unmodified 935.50763 0.50763136 461 P04083 ANXA1 Annexin A1 yes yes 0 0 0 0 1 5 0 1 36.622 36.622 3 0.019142 8699 TMT1-4 79.469 43.589 840.8 1367.9 896.48 818.28 1189.2 1252.7 795 1353 942 818 1214 1207 1 1 1 1 1 1 32750 20530 461 20280 31522 40731 40731 1 VYSLFLDESR Unmodified 1227.6136 0.61355299 2949 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 0 6 0 1 67.63 67.63 2 0.00014648 21088 TMT1-5 134.51 111.6 276.27 421.47 278.53 192.43 276.58 308.71 261 418 290 196 283 297 2 2 2 2 2 2 19897 20531 2949 20281 31523 40732;40733 40732 2 VYSPHVLNLTLIDLPGITK Unmodified 2092.1932 0.19322708 1226;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4;Q9UQ16-5 DNM2;DNM3 Dynamin-2;Dynamin-3 no no 0 0 0 0 0 9 0 1 77.561 77.561 3 6.2393E-10 22620 TMT1-8 85.496 63.021 15.643 28.942 51.397 44.225 42.716 37.157 15 29 51 44 44 36 1 1 1 1 1 1 11053 20532 1226;2942 20282 31524 40734 40734 1 VYSPHVLNLTLVDLPGMTK Unmodified 2096.134 0.13399765 1591 Q05193-3;Q05193;Q05193-5;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 0 0 9 0 1 74.329 74.329 3 1.6159E-15 21253 TMT1-8 110.77 76.085 18.967 40.885 23.718 17.587 35.822 29.892 18 40 25 18 36 29 1 1 1 1 1 1 4065.8 20533 1591 20283 31525 40735 40735 1 VYSTSVTGSR Unmodified 1055.5247 0.52473799 2626 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 0 0 6.83 1.34 1 2 1 1 1 35.73 35.73 2 1.0615E-63 8193 TMT1-4 246.93 224.92 1637.2 2360.7 1815.4 1594.6 1749.8 2441.3 1547 2351 1882 1588 1823 2337 10 10 10 10 10 10 566480 20534 2626 20284 31526;31527;31528;31529;31530;31531 40736;40737;40738;40739;40740;40741;40742;40743;40744;40745 40736 10 VYSYALALK Unmodified 1026.575 0.57498264 2895 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 0 9 0 2 63.428 63.428 2;3 0.000171 17035 TMT1-8 145.63 116.55 291.73 299.7 307.95 252.85 341.29 353.77 275 305 313 254 349 341 3 3 3 3 3 3 54643 20535 2895 20285 31532;31533 40746;40747;40748 40746 3 VYTITPLLSDNR Unmodified 1390.7456 0.7456298 990 P32121-5;P32121-2;P32121;P32121-3;P32121-4 ARRB2 Beta-arrestin-2 yes no 0 0 0 0 0 7 0 1 63.985 63.985 2 5.1623E-05 19040 TMT1-6 110.08 81.35 61.648 49.156 56.869 58.958 55.635 67.702 58 51 58 58 58 65 1 1 1 1 1 1 7748.7 20536 990 20286 31534 40749 40749 1 VYTPVGK Unmodified 762.42759 0.42759012 1324 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 0 7.5 0.5 1 1 43.787 43.787 2 0.0093836 11060 TMT1-7 74.415 44.842 107.78 151.93 151.08 83.67 128.51 135.98 102 152 152 87 131 131 1 1 1 1 1 1 15651 20537 1324 20287 31535;31536 40750;40751 40751 2 VYVGNLGTGAGK Unmodified 1134.6033 0.60332266 1895 Q16629-3;Q16629-2;Q16629-4;Q16629 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 0 8 0 1 50.546 50.546 2 1.5078E-13 13793 TMT1-7 174.4 121.61 84.618 147.23 80.644 94.957 158.36 135.13 80 145 87 94 160 131 1 1 1 1 1 1 30834 20538 1895 20288 31537 40752 40752 1 VYVPALIFGQLLTSSNYDDDEK Unmodified 2486.2217 0.22168626 1574 Q02880-2;Q02880 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 0 8 0 2 95.442 95.442 3;4 1.8837E-07 31146 TMT1-7 78.794 64.922 15.974 13.447 22.245 15.079 29.407 6.8318 15 14 22 15 29 7 1 2 2 1 2 1 3609.7 20539 1574 20289 31538;31539 40753;40754 40754 2 VYVQHLLK Unmodified 998.5913 0.59130141 746 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 0 9 0 1 48.577 48.577 3 0.0014721 11228 TMT1-8 91.041 58.201 91.799 138.24 143.66 100.39 134.82 143.26 87 138 145 102 138 138 1 1 1 1 1 1 6432 20540 746 20290 31540 40755 40755 1 VYVSGLMK Unmodified 895.48372 0.48372479 2697 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein yes yes 0 0 0 0 0 9 0 1 56.533 56.533 2 0.0072712 14356 TMT1-8 113.89 62.201 92.537 77.694 70.941 65.486 70.747 75.799 87 80 73 65 73 73 1 1 1 1 1 1 6758.1 20541 2697 20291 31541 40756 40756 1 VYVTLTCAFR Unmodified 1228.6274 0.62742892 1179 P49407-2;P49407;P10523 ARRB1;SAG Beta-arrestin-1;S-arrestin yes no 0 0 0 0 0 9 0 1 63.584 63.584 2 0.00043457 17136 TMT1-8 112.8 79.376 92.285 92.102 101.16 72.056 90.6 128.53 87 94 102 73 94 123 1 1 1 1 1 1 13681 20542 1179 20292 31542 40757 40757 1 VYVVEGSK Unmodified 879.47018 0.47018322 306 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 0 6 0 1 45.312 45.312 2 0.010881 12309 TMT1-5 98.629 63.737 130.38 181.87 114.85 149.72 102.18 144.19 123 181 123 145 109 138 1 1 1 1 1 1 10902 20543 306 20293 31543 40758 40758 1 VYYDISTAK Unmodified 1058.5284 0.52842638 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 6 0 2 53.03 53.03 2;3 0.00075195 15351 TMT1-5 88.37 73.703 178.63 259.59 235.52 148.22 206.11 318.18 169 259 239 152 214 304 1 1 1 1 1 1 16939 20544 251 20294 31544;31545 40759;40760 40760 2 VYYDLTR Unmodified 928.46543 0.46543219 1566 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 49.083 49.083 2 0.001277 13642 TMT1-4 108.92 86.538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20545 1566 20295 31546 40761 40761 1 VYYLSWLR Unmodified 1098.5862 0.58621603 2892 Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3;Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase no no 0 0 0 0 0 9 0 1 71.65 71.65 2 0.026802 20288 TMT1-8 72.547 34.989 69.132 63.679 49.042 44.238 49.495 52.954 65 65 51 44 51 51 1 1 1 1 1 1 12526 20546 2892 20296 31547 40762 40762 1 WAAALEGYR Unmodified 1035.5138 0.51377937 1604 Q06546 GABPA GA-binding protein alpha chain yes yes 0 0 0 0 0 7 0 1 57.618 57.618 2 0.008878 16533 TMT1-6 60.895 35.069 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20547 1604 20297 31548 40763 40763 1 WAASLENLLEDPEGVKR Unmodified 1925.9847 0.98469087 188 O43665-2;O43665-1;O43665 RGS10 Regulator of G-protein signaling 10 yes no 0 0 0 0 1 6 0 1 74.984 74.984 3 1.1041E-24 23977 TMT1-5 151.48 103.17 146.34 198.75 123.14 133.35 132.49 166.78 138 198 131 131 138 160 1 1 1 1 1 1 37596 20548 188 20298 31549 40764 40764 1 WAAVVVPSGEEQR Unmodified 1426.7205 0.72047768 425;474;426;689;762 P04439;P04439-2;P17693-6;P17693-2;P01889;P01893;P17693;P17693-5;P13747 HLA-A;HLA-G;HLA-B;HLA-H;HLA-E HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, alpha chain G;HLA class I histocompatibility antigen, B-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, alpha chain E no no 0 0 0 0 0 5.5 0.5 1 1 55.444 55.444 3 6.5374E-06 16269 TMT1-5 107.09 65.548 191.46 269.4 233.79 172.37 264.42 263.22 181 269 239 175 269 254 3 3 3 3 3 3 204070 20549 474;425;426;762;689 20299 31550;31551 40765;40766;40767 40767 3 WAAVVVPSGQEQR Unmodified 1425.7365 0.7364621 629 P10321;P10321-2 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 0 0 0 0 0 7 0 1 54.105 54.105 2 1.9896E-10 15144 TMT1-6 138.25 71.033 201.59 107.98 110.6 166.49 95.403 106.01 189 116 116 160 102 102 1 1 1 1 1 1 34026 20550 629 20300 31552 40768 40768 1 WADLLLVAPLDANTLGK Unmodified 1809.0036 0.0036354 2381 Q96CD2-2;Q96CD2 PPCDC Phosphopantothenoylcysteine decarboxylase yes no 0 0 0 0 0 8 0 1 91.367 91.367 3 0.00020187 29577 TMT1-7 74.141 65.198 23.297 28.826 27.477 46.106 18.496 69.828 22 29 29 44 22 66 1 1 1 1 1 1 3250.3 20551 2381 20301 31553 40769 40769 1 WAEGAESLEVLAER Unmodified 1558.7627 0.76273643 2256 Q8TDZ2-4;Q8TDZ2;Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 0 0 4 0 1 68.775 68.775 3 1.8106E-07 21623 TMT1-3 108.97 64.359 23.293 28.814 28.176 30.443 35.487 22.439 22 29 29 30 36 22 1 1 1 1 1 1 5370.2 20552 2256 20302 31554 40770 40770 1 WAELLPLLQQCQVVR Unmodified 1852.0029 0.0029238935 681 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 0 9 0 2 84.111 84.111 2;3 1.0183E-19 25196 TMT1-8 143.94 108.99 77.134 140.26 82.058 73.456 76.683 105.48 73 138 87 73 80 101 2 2 2 2 2 2 65096 20553 681 20303 31555;31556 40771;40772 40772 2 WAEQYLK Unmodified 936.47052 0.47051757 944 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 0 7 0 1 55.927 55.927 2 0.0094733 15816 TMT1-6 112.17 56.777 240.38 337.1 250.76 229.08 217.33 340.25 227 336 261 227 229 325 1 1 1 1 1 1 62499 20554 944 20304 31557 40773 40773 1 WAGGGFLSTVGDLLK Unmodified 1519.8035 0.80347903 1516 P83111 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes yes 0 0 0 0 0 9 0 1 86.352 86.352 3 3.6925E-11 26050 TMT1-8 115.12 79.16 46.46 73.466 64.172 34.037 79.009 90.487 44 73 65 36 80 87 1 1 1 1 1 1 13828 20555 1516 20305 31558 40774 40774 1 WALSQSNPSALR Unmodified 1328.6837 0.68369824 1311 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 0 9 0 1 52.11 52.11 2 6.0771E-62 12599 TMT1-8 240 163.15 160.46 293.42 194.9 142.24 246.37 341.55 152 289 203 145 253 327 2 2 2 2 2 2 56133 20556 1311 20306 31559 40775;40776 40775 2 WALWFFK Unmodified 996.52216 0.52215921 513 P06730;P06730-3;P06730-2;A6NMX2 EIF4E;EIF4E1B Eukaryotic translation initiation factor 4E;Eukaryotic translation initiation factor 4E type 1B yes no 0 0 0 0 0 9 0 1 86.765 86.765 2 0.0082772 26161 TMT1-8 140.79 83.687 161.94 225.42 183.32 153.4 154.09 181.09 153 225 189 153 160 174 2 2 2 2 2 2 13735 20557 513 20307 31560 40777;40778 40777 2 WANYHLENAGCNK Unmodified 1575.6889 0.68885998 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 0 7 0 1 45.29 45.29 3 2.6905E-08 11711 TMT1-6 119.39 97.828 152.3 294.29 302.71 199.28 242.27 202.02 145 291 305 203 247 196 2 2 2 2 2 2 36462 20558 690 20308 31561 40779;40780 40780 2 WAPNENK Unmodified 857.40317 0.40316629 128 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 0 6 0 1 40.721 40.721 2 0.0020802 10440 TMT1-5 143.85 111.24 687.59 965.12 659.29 678.99 861.94 1009.4 649 961 694 672 887 970 2 2 2 2 2 2 124500 20559 128 20309 31562 40781;40782 40781 2 WAQLSEVLSWQFSSVTK Unmodified 1995.0102 0.010177341 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 9 0 1 90.272 90.272 3 2.5553E-26 27539 TMT1-8 135.27 103.2 61.573 65.138 55.889 83.739 77.786 59.608 58 66 59 81 80 58 2 2 2 2 2 2 8514.3 20560 1091 20310 31563 40783;40784 40783 2 WARPPISMNFEVPFAPSGLK Unmodified 2243.1561 0.15613007 2387 Q96CW1-2;Q96CW1 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 1 9 0 1 75.527 75.527 3 0.00028768 21825 TMT1-8 57.989 26.475 30.795 20.72 36.603 21.332 28.32 30.106 29 22 36 22 29 29 1 1 1 1 1 1 4834.3 20561 2387 20311 31564 40785 40785 1 WASGLTPAQNCPR Unmodified 1456.6881 0.6881317 152 O15533-2;O15533;O15533-3 TAPBP Tapasin yes no 0 0 0 0 0 8 0 2 47.461 47.461 2;3 5.9163E-16 12624 TMT1-7 135.56 108.59 37.921 65.545 63.281 65.672 85.14 82.851 36 65 65 65 87 80 1 1 1 1 1 1 15880 20562 152 20312 31565;31566 40786;40787 40787 2 WCEYGLTFTEK Unmodified 1432.6333 0.63330216 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 6.33 0.471 2 1 66.92 66.92 2;3 5.3499E-05 20788 TMT1-5 115.57 107.85 330.87 373.12 340.57 267.43 276.17 433.44 312 377 348 268 290 414 4 4 4 4 4 4 73168 20563 1119 20313 31567;31568;31569 40788;40789;40790;40791 40788 4 WCGTTQNYDADQK Unmodified 1585.6467 0.64672039 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12;P02751-16;P02751-2 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 5 0 1 45.728 45.728 3 0.00042636 12327 TMT1-4 79.875 62.936 190 415.34 356.3 164.93 271.85 300.32 181 408 360 175 277 289 1 1 1 1 1 1 12085 20564 442 20314 31570 40792 40792 1 WCNEHLK Unmodified 985.44399 0.44398525 831;270;1771 O75369-2;O75369-9;O75369;O75369-8;O75369-5;O75369-4;O75369-6;O75369-3;P21333-2;P21333;Q14315-2;Q14315 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C no no 0 0 0 0 0 4.67 2.62 1 1 1 39.133 39.133 3 0.0021387 9594 TMT1-5 105.57 82.214 3916.3 5389.9 4652.8 3296.3 4151.7 5546.3 3701 5387 4753 3341 4296 5314 5 5 5 5 5 5 723500 20565 270;831;1771 20315 31571;31572;31573 40793;40794;40795;40796;40797 40794 5 WCWHLLAK Unmodified 1112.559 0.55895542 942 P29728;P29728-2 OAS2 2'-5'-oligoadenylate synthase 2 yes no 0 0 0 0 0 9 0 1 61.514 61.514 3 0.0027229 16285 TMT1-8 80.18 47.059 38.021 74.458 38.881 91.317 77.438 59.618 36 73 44 87 80 58 1 1 1 1 1 1 5109.2 20566 942 20316 31574 40798 40798 1 WDAIVAEVK Unmodified 1029.5495 0.54949617 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 6 0 1 69.521 69.521 2 0.0035327 21846 TMT1-5 70.552 29.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20567 1138 20317 31575 40799 40799 1 WDAWNALGSLPK Unmodified 1356.6826 0.68263561 284 O75521-2;O75521 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 0 0 0 0 0 9 0 1 76.578 76.578 3 0.012224 22249 TMT1-8 52.265 27.048 53.98 72.978 63.075 58.456 62.694 76.029 51 73 65 58 65 73 1 1 1 1 1 1 6261.6 20568 284 20318 31576 40800 40800 1 WDAWNELK Unmodified 1060.4978 0.49779495 526 P07108;P07108-3;P07108-2;P07108-4;P07108-5 DBI Acyl-CoA-binding protein yes no 0 0 0 0 0 7 0 1 66.753 66.753 2 0.0035373 20104 TMT1-6 130.96 64.706 542.7 953.52 855.77 623.8 849.3 842.42 515 944 872 632 867 813 3 3 3 3 3 3 114670 20569 526 20319 31577 40801;40802;40803 40802 3 WDDPYYDIAR Unmodified 1312.5724 0.57241646 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 61.724 61.724 2 1.4052E-09 18901 TMT1-3 174.92 150.04 314.31 365.37 425.44 317.7 298.51 385.9 297 370 428 319 312 370 3 3 3 3 3 3 90395 20570 1616 20320 31578;31579 40804;40805;40806 40806 3 WDESWVQTVLPLVMDT Unmodified 1917.9183 0.91825079 2529 Q9BT22-2;Q9BT22 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 0 0 0 0 0 7 0 1 112.62 112.62 3 3.6545E-06 34135 TMT1-6 74.789 64.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20571 2529 20321 31580 40807 40807 1 WDFTPCK Unmodified 952.41129 0.41128813 1057 P38606-2;P38606 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 0 8 0 1 58.425 58.425 3 0.034199 16890 TMT1-7 57.103 25.874 68.809 102.71 70.251 49.946 85.607 90.299 65 102 73 51 87 87 1 1 1 1 1 1 8044.6 20572 1057 20322 31581 40808 40808 1 WDGVPFILR Unmodified 1101.5971 0.59711507 655 P11413;P11413-3;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 0 8.5 0.5 1 1 74.264 74.264 2 0.00018625 21345 TMT1-8 143.89 90.535 237.64 378.76 315.72 220.86 273.84 350.36 225 376 323 224 283 336 3 3 3 3 3 3 55908 20573 655 20323 31582;31583 40809;40810;40811 40811 3 WDKDNLQILR Unmodified 1299.6935 0.69353465 2566 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 0 0 1 8 0 1 56.93 56.93 3 0.027603 16327 TMT1-7 59.198 47.694 107.95 137.31 134.33 139.2 192.7 172.52 102 138 138 138 196 167 1 1 1 1 1 1 9398.6 20574 2566 20324 31584 40812 40812 1 WDLSELPK Unmodified 986.5073 0.50729701 2321 Q92841-1;Q92841-3;Q92841;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 0 6 0 1 65.522 65.522 2 0.017671 20234 TMT1-5 90.657 75.506 99.8 122.9 74.412 95.885 128.76 112.52 94 123 80 94 131 109 1 1 1 1 1 1 21755 20575 2321 20325 31585 40813 40813 1 WDQDYDR Unmodified 996.39372 0.39372381 2013 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 0 3 0 1 41.925 41.925 2 0.037151 12047 TMT1-2 87.476 80.581 107.33 190.62 194.03 136.22 161.96 188.32 102 189 196 138 167 181 1 1 1 1 1 1 24450 20576 2013 20326 31586 40814 40814 1 WDQGLEKPR Unmodified 1127.5724 0.57235688 1666 Q13045-2;Q13045;Q13045-3 FLII Protein flightless-1 homolog yes no 0 0 0 0 1 6 0 1 44.384 44.384 3 0.039384 11903 TMT1-5 55.718 26.912 154.18 118.19 136.61 108.61 126.6 158.42 145 123 138 109 131 152 1 1 1 1 1 1 9503.2 20577 1666 20327 31587 40815 40815 1 WDQSTFLGR Unmodified 1108.5302 0.53015772 2561 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 0 7 0 2 57.15 57.15 2 0.00092411 16902 TMT1-6 126.82 0 200.07 245.12 250.81 186.34 223.17 318.76 189 247 254 188 232 305 2 2 2 2 2 2 43894 20578 2561 20328 31588;31589 40816;40817 40817 2 WDTANNPLYK Unmodified 1220.5826 0.58258722 484 P05106 ITGB3 Integrin beta-3 yes yes 0 0 0 0 0 5 2.83 1 2 57.94 57.94 2;3 2.5567E-06 16571 TMT1-6 158.37 147.21 1569.7 2146.7 2161.8 1498.5 1985.3 2229.9 1485 2151 2186 1523 2037 2145 3 3 3 3 3 3 422190 20579 484 20329 31590;31591;31592 40818;40819;40820 40819 3 WDTGENPIYK Unmodified 1221.5666 0.5666028 500 P05556 ITGB1 Integrin beta-1 yes yes 0 0 0 0 0 5.67 0.471 1 2 56.422 56.422 2;3 0.0003112 16546 TMT1-4 123.75 68.199 315.45 298.39 290.9 270.42 332.6 370.01 297 305 298 269 342 356 3 3 3 3 3 3 57772 20580 500 20330 31593;31594;31595 40821;40822;40823 40821 3 WDVFSENLLADVK Unmodified 1534.7668 0.76675917 288 O75558 STX11 Syntaxin-11 yes yes 0 0 0 0 0 6.5 0.5 1 1 85.984 85.984 3 3.4586E-06 28253 TMT1-5 89.959 65.263 123.51 204.85 168.2 160.7 221.01 202.63 117 203 174 160 225 196 2 2 2 2 2 2 40835 20581 288 20331 31596;31597 40824;40825;40826 40824 3 WDYEKNEWK Unmodified 1296.5775 0.57750184 677 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 1 6 0 1 52.683 52.683 3 0.030305 15190 TMT1-5 60.102 31.126 405.89 380.7 348.25 294.84 247.52 469.44 382 389 357 293 265 447 1 1 1 1 1 1 19968 20582 677 20332 31598 40827 40827 1 WDYLTQVEK Unmodified 1180.5764 0.57643921 2678 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 0 6 0 1 64.931 64.931 3 0.00041527 20064 TMT1-5 105.4 73.067 77.166 92.86 116.79 61.948 113.55 143.87 73 94 116 65 116 138 1 1 1 1 1 1 19154 20583 2678 20333 31599 40828 40828 1 WEDAIPLALK Unmodified 1154.6336 0.63356015 608 P09960;P09960-4 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 0 7 0 1 74.29 74.29 2 0.00010425 23091 TMT1-6 138.98 120.2 169.27 257.85 186.88 199.14 210.23 251.97 160 256 196 196 218 242 1 1 1 1 1 1 37520 20584 608 20334 31600 40829 40829 1 WEDGSVISENMFEFLEDGK Unmodified 2230.9729 0.97286514 2817 Q9P126-2;Q9P126 CLEC1B C-type lectin domain family 1 member B yes no 0 0 0 0 0 5 0 2 91.679 91.679 3;4 4.3318E-07 30269 TMT1-4 88.385 79.566 46.643 42.678 59.41 36.639 13.885 46.508 44 44 59 37 15 44 2 2 2 2 1 2 6073.2 20585 2817 20335 31601;31602 40830;40831 40830 2 WEFTSWVPLVSR Unmodified 1505.7667 0.76669959 2155 Q8IZ07 ANKRD13A Ankyrin repeat domain-containing protein 13A yes yes 0 0 0 0 0 9 0 1 82.829 82.829 2 0.0037668 24663 TMT1-8 78.136 46.764 23.181 52.247 27.157 21.768 35.08 45.903 22 51 29 22 36 44 1 1 1 1 1 1 4084.2 20586 2155 20336 31603 40832 40832 1 WEGQSSRPR Unmodified 1101.5316 0.5315547 3081 yes yes 0 0 0 0 1 3 0 1 31.147 31.147 3 0.0028828 7779 TMT1-2 91.265 53.028 130.43 128.05 152.04 91.704 105.11 136.65 123 131 152 94 109 131 1 1 1 1 1 1 15070 + 20587 3081 20337 31604 40833 40833 1 WELSSDQPYL Unmodified 1236.5663 0.56626845 340 O95182 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 0 0 0 0 0 4 0 1 76.346 76.346 2 0.00015965 24607 TMT1-3 133.12 103.97 54.419 26.71 28.535 21.685 35.083 45.903 51 29 29 22 36 44 1 1 1 1 1 1 9354.8 20588 340 20338 31605 40834 40834 1 WESGYNTR Unmodified 1011.441 0.44100836 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 5 0.816 1 1 1 38.253 38.253 2 9.2787E-08 9313 TMT1-4 171.75 116.22 2051.6 4124.6 2639 1985.4 2536 2600.1 1946 4048 2759 2004 2597 2507 4 4 4 4 4 4 480130 20589 1397 20339 31606;31607;31608 40835;40836;40837;40838 40837 4 WESPAQNTAHLDQFER Unmodified 1927.8813 0.88128843 760 P17612;P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes no 0 0 0 0 0 4 0 1 49.864 49.864 3 0.00021588 14248 TMT1-3 76.051 56.84 77.296 85.669 100.94 87.522 82.559 128.76 73 87 102 87 87 123 1 1 1 1 1 1 9147.8 20590 760 20340 31609 40839 40839 1 WETGEVQAQSAAK Unmodified 1403.6681 0.66810776 1000 P33241-3;P33241;P33241-2 LSP1 Lymphocyte-specific protein 1 yes no 0 0 0 0 0 5 0 2 46.422 46.422 2;3 2.1676E-10 12592 TMT1-4 137.58 91.419 281.06 544.69 271.39 331.8 327.38 470.36 266 534 296 324 343 450 2 2 2 2 2 2 62759 20591 1000 20341 31610;31611 40840;40841 40841 2 WEVADLQPQLK Unmodified 1325.698 0.69795133 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 6 0 1 66.38 66.38 2 0.0023575 20579 TMT1-5 93.258 77.033 61.655 56.733 49.167 51.648 61.944 106.96 58 58 51 51 65 102 1 1 1 1 1 1 11461 20592 851 20342 31612 40842 40842 1 WEVEEMK Unmodified 949.42152 0.42151847 920 P27824-2;P27824 CANX Calnexin yes no 0 0 0 0 0 4 0 1 55.113 55.113 2 0.038681 16220 TMT1-3 86.794 44.565 84.023 193.06 141.83 68.62 144.41 119.54 80 189 145 73 145 116 1 1 1 1 1 1 9011.2 20593 920 20343 31613 40843 40843 1 WEVLIGSSHILTPTR Unmodified 1707.9308 0.93080481 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 9 0 1 66.899 66.899 3 1.1912E-05 18424 TMT1-8 84.842 67.353 84.905 92.981 78.349 49.473 85.079 106.3 80 94 80 51 87 102 1 1 1 1 1 1 25721 20594 1878 20344 31614 40844 40844 1 WEVLIIGPPDTLYEGGVFK Unmodified 2132.1194 0.11939344 1420 P62253 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 90.879 90.879 3 0.0047274 29355 TMT1-7 49.537 30.704 23.314 21.317 31.063 0 29.814 15.139 22 22 30 0 29 15 1 1 1 0 1 1 2465.3 20595 1420 20345 31615 40845 40845 1 WEWLVNQHR Unmodified 1266.6258 0.62578944 2560 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 0 0 0 0 0 9 0 1 56.727 56.727 3 0.00026407 14441 TMT1-8 115.71 81.542 46.476 81.066 55.052 58.501 85.726 75.372 44 80 58 58 87 73 1 1 1 1 1 1 9091.6 20596 2560 20346 31616 40846 40846 1 WEWPGSPK Unmodified 985.46577 0.46576654 1997 Q5W0V3;Q5W0V3-2 FAM160B1 Protein FAM160B1 yes no 0 0 0 0 0 8 0 1 60.423 60.423 2 0.0010872 17717 TMT1-7 101.54 65.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20597 1997 20347 31617 40847 40847 1 WEYVPLGPFLGK Unmodified 1404.7442 0.74417324 751 P16930;P16930-2 FAH Fumarylacetoacetase yes no 0 0 0 0 0 9 0 1 82.656 82.656 2 5.7788E-05 24584 TMT1-8 103.26 64.237 38.047 65.895 41.863 35.904 50.428 36.937 36 65 44 36 51 36 1 1 1 1 1 1 10670 20598 751 20348 31618 40848 40848 1 WFATTDWIAIYQR Unmodified 1669.8253 0.8252771 760;850 P17612;P17612-2;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2;P22694-10 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 0 9 0 2 82.206 82.206 2;3 2.9616E-13 24467 TMT1-8 137.16 107.62 69.716 142.11 64.713 121.1 97.218 144.33 66 139 73 116 103 138 3 3 3 3 3 3 45827 20599 760;850 20349 31619;31620 40849;40850;40851 40850 3 WFDFPFTR Unmodified 1114.5236 0.52361577 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 78.846 78.846 2 0.045509 23135 TMT1-8 66.504 45.35 38.06 74.566 32.283 44.967 63.864 60.006 36 73 36 44 65 58 1 1 1 1 1 1 6358.3 20600 1977 20350 31621 40852 40852 1 WFEGFNWEGLR Unmodified 1439.6622 0.66223452 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 8 0 1 79.858 79.858 3 0.0004134 25304 TMT1-7 94.465 83.36 23.303 36.396 20.144 30.496 0 45.838 22 36 22 29 0 43 1 1 1 1 0 1 6730.2 20601 1742 20351 31622 40853 40853 1 WFGFLEAQQAFQSVGTK Unmodified 1942.9577 0.95774784 543 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 0 9 0 1 84.384 84.384 3 1.5108E-11 25237 TMT1-8 109.35 89.246 38.166 51.115 34.408 28.83 43.424 37.137 36 51 36 29 44 36 1 1 1 1 1 1 9487.4 20602 543 20352 31623 40854 40854 1 WFHEGLSR Unmodified 1030.4985 0.49846366 300 O75791 GRAP2 GRB2-related adapter protein 2 yes yes 0 0 0 0 0 7 0 1 43.737 43.737 3 0.0056365 11018 TMT1-6 82.452 42.83 46.266 104.23 70.605 42.523 72.352 59.763 44 102 73 44 73 58 1 1 1 1 1 1 7801.7 20603 300 20353 31624 40855 40855 1 WFHPNITGVEAENLLLTR Unmodified 2109.1007 0.10072368 1600 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 0 8 0 1 71.068 71.068 3 5.5917E-08 21900 TMT1-7 98.175 78.571 54.037 49.392 73.503 50.437 49.21 52.962 51 51 73 51 51 51 1 1 1 1 1 1 20133 20604 1600 20354 31625 40856 40856 1 WFLTCINQPQFR Unmodified 1608.7871 0.78711746 904 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 0 9 0 1 72.855 72.855 3 1.8814E-23 20750 TMT1-8 186.87 162.02 114.97 205.56 160.24 169.39 191.05 180.03 109 203 167 167 196 174 2 2 2 2 2 2 46575 20605 904 20355 31626 40857;40858 40857 2 WFPEVTHFCR Unmodified 1377.6288 0.6288259 2679 Q9HBH0;Q9HBH0-2 RHOF Rho-related GTP-binding protein RhoF yes no 0 0 0 0 0 8 0 1 57.878 57.878 3 0.0088283 16710 TMT1-7 65.278 49.053 54.091 88.396 31.363 45.19 54.912 107.17 51 87 36 44 58 102 1 1 1 1 1 1 6920.7 20606 2679 20356 31627 40859 40859 1 WFPLLGAPAGAALR Unmodified 1438.8085 0.80850483 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 9 0 1 79.023 79.023 2 0.00066246 23193 TMT1-8 74.92 38.226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20607 2131 20357 31628 40860 40860 1 WFQPAIPSWLQK Unmodified 1499.7925 0.79252041 2066 Q70J99;Q70J99-3 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 9 0 1 80.987 80.987 3 1.3067E-07 23997 TMT1-8 118.9 92.193 200.62 238.01 164.76 184.48 187.72 256.88 189 239 174 181 196 246 2 2 2 2 2 2 51152 20608 2066 20358 31629 40861;40862 40862 2 WFSIQNNQLVYQK Unmodified 1666.8467 0.84674083 1823 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 yes yes 0 0 0 0 0 9 0 1 69.508 69.508 3 0.0020782 19495 TMT1-8 60.157 33.722 84.804 85.145 102 63.51 77.397 97.995 80 87 102 65 80 94 1 1 1 1 1 1 7997.7 20609 1823 20359 31630 40863 40863 1 WFTDTSIILFLNK Unmodified 1596.8552 0.85518025 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P09471-2 GNAI2;GNAI1;GNAO1 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha yes no 0 0 0 0 0 9 0 1 93.205 93.205 3 9.142E-17 28652 TMT1-8 155.33 111.71 108.15 114.11 120.8 134.06 102.35 160.18 102 116 124 131 109 153 2 2 2 2 2 2 22787 20610 480 20360 31631 40864;40865 40865 2 WFTDTSIILFLNKK Unmodified 1724.9501 0.95014327 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2;P09471-2 GNAI2;GNAI1;GNAO1 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha yes no 0 0 0 0 1 9 0 1 83.59 83.59 3 0.00011251 24922 TMT1-8 91.28 72.205 122.5 209.43 153.01 155.39 144.82 204.8 116 207 160 153 152 196 2 2 2 2 2 2 23493 20611 480 20361 31632 40866;40867 40866 2 WFTETSIILFLNK Unmodified 1610.8708 0.87083031 577 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 0 9 0 1 92.799 92.799 3 0.0011937 28445 TMT1-8 66.498 39.399 45.867 19.831 28.986 21.791 28.043 37.576 43 22 29 22 29 36 1 1 1 1 1 1 1688.4 20612 577 20362 31633 40868 40868 1 WFTLSSGQGQVLLR Unmodified 1590.8518 0.85182621 2525 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 0 9 0 1 71.39 71.39 3 5.7072E-07 20281 TMT1-8 102.73 79.355 30.725 44.271 28.328 29.646 19.289 68.74 29 44 30 29 22 65 1 1 1 1 1 1 17464 20613 2525 20363 31634 40869 40869 1 WFVLDAETR Unmodified 1135.5662 0.56620887 2687 Q9HC35-2;Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 0 7 0 1 67.78 67.78 2 0.0071167 20513 TMT1-6 93.551 54.403 68.687 109.93 84.657 56.907 76.638 128.93 65 109 87 58 80 123 1 1 1 1 1 1 13614 20614 2687 20364 31635 40870 40870 1 WFYIASAFR Unmodified 1159.5815 0.581465 444 P02763 ORM1 Alpha-1-acid glycoprotein 1 no no 0 0 0 0 0 9 0 1 76.666 76.666 2 0.0050587 22256 TMT1-8 101.64 50.765 92.465 92.604 70.391 57.743 77.369 106.52 87 94 73 58 80 102 1 1 1 1 1 1 15871 20615 444 20365 31636 40871 40871 1 WGDAGAEYVVESTGVFTTMEK Unmodified 2276.0307 0.030714366 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 0 5.5 1.5 1 3 6 2 81.74 81.74 3;4 2.7983E-31 26487 TMT1-5 146.78 126.99 1794.8 2704.6 1805 1854.7 1841.3 2627.4 1695 2684 1900 1827 1928 2514 38 39 38 39 39 39 353800 20616 472 20366 31637;31638;31639;31640;31641;31642;31643;31644;31645;31646;31647;31648 40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914 40888 43 WGDAGAEYVVESTGVFTTMEK Oxidation (M) 2292.0256 0.025628988 472 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 0 5.67 0.471 1 2 77.238 77.238 3;4 4.0799E-07 24076 TMT1-4 86.748 79.388 107.57 168.6 173.25 122.19 102.13 182.57 102 168 175 123 109 174 3 3 3 3 3 3 35435 20617 472 20366 31649;31650;31651 40915;40916;40917 40915 66 3 WGDEHIPGSPYR Unmodified 1412.6473 0.64731274 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.67 1.89 1 1 2 1 1 47.094 47.094 2;3 3.8098E-09 12798 TMT1-4 152.54 144.43 1749.7 1939 2019.5 1503.7 1924.6 2283.9 1651 1965 2044 1519 1981 2194 8 8 8 8 8 8 931700 20618 831 20367 31652;31653;31654;31655;31656;31657 40918;40919;40920;40921;40922;40923;40924;40925 40921 8 WGDIEFPPPFGR Unmodified 1416.6826 0.68263561 1283 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 0 7.5 0.5 1 1 78.882 78.882 2 0.010262 24862 TMT1-6 73.887 51.057 106.97 137.62 119.76 125.99 127.63 105.09 101 138 124 124 131 102 3 3 3 3 3 3 15447 20619 1283 20368 31658;31659 40926;40927;40928 40926 3 WGEEEAELNK Unmodified 1203.5408 0.54078198 1185 P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 4 0 1 52.323 52.323 3 0.024398 15199 TMT1-3 52.79 31.539 68.682 102.36 91.994 72.435 99.472 113.36 65 102 94 73 102 109 1 1 1 1 1 1 6876.2 20620 1185 20369 31660 40929 40929 1 WGFGLEELYGLALR Unmodified 1622.8457 0.8456782 2640 Q9H3P7 ACBD3 Golgi resident protein GCP60 yes yes 0 0 0 0 0 9 0 1 90.803 90.803 3 6.3749E-05 27705 TMT1-8 80.522 31.022 46.708 50.412 42.024 52.157 57.507 52.725 44 51 44 51 59 51 2 2 2 2 2 2 5683.6 20621 2640 20370 31661 40930;40931 40930 2 WGFSFDEILK Unmodified 1240.6128 0.61282471 1200 P49758-2;P49758-6;P49758-11;P49758-7;P49758-10;P49758-9;P49758-16;P49758-5;P49758-8;P49758-3;P49758;P49758-13;P49758-14;P49758-15;P49758-12 RGS6 Regulator of G-protein signaling 6 yes no 0 0 0 0 0 8 0 1 81.963 81.963 3 0.0052214 26103 TMT1-7 72.325 43.926 30.814 35.884 20.496 22.435 20.684 37.786 29 36 22 22 22 36 1 1 1 1 1 1 1954.8 20622 1200 20371 31662 40932 40932 1 WGLAWVSSQFYNK Unmodified 1584.7725 0.77251325 1778 Q14457 BECN1 Beclin-1 yes yes 0 0 0 0 0 9 0 1 79.477 79.477 3 0.0012852 23393 TMT1-8 65.842 43.513 38.328 35.377 20.495 22.293 28.276 30.107 36 36 22 22 29 29 1 1 1 1 1 1 2969 20623 1778 20372 31663 40933 40933 1 WGLGGTCVNVGCIPK Unmodified 1616.7803 0.78031752 1912;2698 Q9NNW7-2;Q9NNW7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;Q16881-7 TXNRD2;TXNRD1 Thioredoxin reductase 2, mitochondrial;Thioredoxin reductase 1, cytoplasmic no no 0 0 0 0 0 9 0 1 65.443 65.443 3 2.8035E-06 17859 TMT1-8 94.673 65.333 77.111 116.45 105.95 103.49 89.154 128.57 73 116 109 102 94 123 1 1 1 1 1 1 15578 20624 2698;1912 20373 31664 40934 40934 1 WGSNELPAEEGK Unmodified 1315.6044 0.60444487 748 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 0 4 0 1 51.522 51.522 3 0.00041886 14890 TMT1-3 86.772 60.24 76.936 123.52 129.4 101.93 97.859 120.86 73 123 131 102 102 116 1 1 1 1 1 1 12248 20625 748 20374 31665 40935 40935 1 WGSPTSLEGELGAVAIFHEALQATALR Unmodified 2823.4555 0.45554279 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 8 0 2 89.47 89.47 3 6.3073E-08 28895 TMT1-7 70.295 58.983 7.3145 22.684 13.809 22.967 13.587 30.526 7 22 15 22 15 29 1 1 1 1 1 1 5835.3 20626 2061 20375 31666;31667 40936;40937 40936 2 WGTDEAQFIYILGNR Unmodified 1781.8737 0.87368386 555 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 0 7 0 1 79.164 79.164 3 1.6052E-17 24932 TMT1-6 149.82 123.17 100.44 176.65 102.24 103.01 126.6 165.88 95 174 109 102 131 159 2 2 2 2 2 2 80961 20627 555 20376 31668 40938;40939 40938 2 WGTDEEK Unmodified 863.36611 0.36611208 578 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 0 4 0 1 41.775 41.775 2 0.0076903 11001 TMT1-3 124.83 53.611 473.74 785.47 684.43 502.19 651.97 659.37 449 779 699 508 667 636 1 1 1 1 1 1 71147 20628 578 20377 31669 40940 40940 1 WGTFSNLWEHNQAIIK Unmodified 1942.969 0.96898123 1106 P42892-3;P42892-2;P42892-4;P42892 ECE1 Endothelin-converting enzyme 1 yes no 0 0 0 0 0 9 0 1 69.524 69.524 3 8.3724E-17 19502 TMT1-8 125.89 79.147 99.825 76.561 109.35 78.481 129.81 105.03 94 80 109 80 131 102 1 1 1 1 1 1 8550.4 20629 1106 20378 31670 40941 40941 1 WGTIEVENTTHCEFAYLR Unmodified 2225.0212 0.021152733 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 5.5 0.5 1 1 62.851 62.851 3 6.4513E-08 19144 TMT1-5 97.214 80.135 100.35 192.62 102.32 79.866 136.57 119.76 95 189 109 81 138 116 3 3 3 3 3 3 16066 20630 2864 20379 31671;31672 40942;40943;40944 40944 3 WGTLTDCVVMRDPQTK Unmodified 1905.9077 0.90770288 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 8 0 1 58.543 58.543 3 8.4048E-06 16990 TMT1-7 90.754 67.616 53.96 95.588 47.218 43.938 71.224 90.71 51 94 51 44 73 87 1 1 1 1 1 1 8232.5 20631 1259 20380 31673 40945 40945 1 WHELMLDK Unmodified 1070.5219 0.52190122 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 7 0 1 54.311 54.311 3 0.0018396 15226 TMT1-6 67.993 61.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20632 1714 20381 31674 40946 40946 1 WHFYDTVK Unmodified 1094.5185 0.5185304 970 P31040 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes yes 0 0 0 0 0 8 0 1 52.258 52.258 3 0.00082057 14475 TMT1-7 126.52 100.48 269.26 523.93 288.01 255.18 338.62 428.46 255 514 307 255 349 411 1 1 1 1 1 1 60129 20633 970 20382 31675 40947 40947 1 WHGDVAVK Unmodified 910.4661 0.4661009 458 P10398;P04049;P04049-2;P15056 ARAF;RAF1;BRAF Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase B-raf yes no 0 0 0 0 0 6 0 1 39.477 39.477 3 0.0050855 9978 TMT1-5 84.498 60.941 91.846 138.37 135.7 108.79 120.04 105.31 87 138 138 109 123 102 1 1 1 1 1 1 10852 20634 458 20383 31676 40948 40948 1 WHLASEK Unmodified 869.43955 0.43955179 666 P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes yes 0 0 0 0 0 7 0 1 40.59 40.59 3 0.0032184 9806 TMT1-6 66.682 35.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20635 666 20384 31677 40949 40949 1 WHPEVCHHCPDVPILLVGTK Unmodified 2393.1773 0.17727622 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 8 0 1 55.282 55.282 5 4.2306E-06 15675 TMT1-7 77.221 60.505 77.313 101.9 84.409 72.306 130.39 96.483 73 102 87 73 131 94 1 1 1 1 1 1 8069.5 20636 1522 20385 31678 40950 40950 1 WHTGGGGEK Unmodified 927.41988 0.41987898 2131 Q86YV0-2;Q86YV0 RASAL3 RAS protein activator like-3 yes no 0 0 0 0 0 6 0 1 29.964 29.964 3 0.014375 6264 TMT1-5 62.303 29.182 68.953 94.48 53.056 82.701 83.844 97.811 65 94 58 80 87 94 1 1 1 1 1 1 3193.1 20637 2131 20386 31679 40951 40951 1 WIDETPPVDQPSR Unmodified 1538.7365 0.73652168 1838 Q15257-2;Q15257;Q15257-3 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 0 3 0 1 54.529 54.529 3 0.0056882 17026 TMT1-2 62.042 58.138 38.214 51.251 26.098 45.178 72.23 59.767 36 51 29 44 73 58 1 1 1 1 1 1 11047 20638 1838 20387 31680 40952 40952 1 WIDNPTVDDR Unmodified 1229.5677 0.56766543 776 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 0 3 1.41 1 1 1 1 1 52.016 52.016 2 1.0802E-28 16078 TMT1-2 208.63 173.82 4250.3 5690.3 5257.4 3660.6 4715.8 5567.5 4017 5700 5345 3717 4852 5349 9 9 9 9 9 9 1089700 20639 776 20388 31681;31682;31683;31684;31685 40953;40954;40955;40956;40957;40958;40959;40960;40961 40956 9 WIFVGGK Unmodified 805.44866 0.44865992 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 9 0 1 65.032 65.032 2 0.011995 17668 TMT1-8 114.67 45.323 222.18 336.31 244.37 157.05 173.57 248.76 210 334 252 160 181 238 1 1 1 1 1 1 27154 20640 193 20389 31686 40962 40962 1 WIGSETDLEPPVVK Unmodified 1568.8086 0.80862399 118 O14974-4;O14974;O14974-3;O14974-2 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 0 5 0 1 68.252 68.252 3 1.9026E-07 21149 TMT1-4 108.56 102.78 61.613 56.614 56.414 59.149 46.941 107.39 58 58 58 58 51 102 1 1 1 1 1 1 12222 20641 118 20390 31687 40963 40963 1 WIHPASGR Unmodified 922.47733 0.47733428 2881 Q9UIJ7;Q9UIJ7-2;Q9UIJ7-3 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 0 0 0 0 0 9 0 1 33.21 33.21 3 0.014118 5865 TMT1-8 57.047 35.501 30.561 51.368 49.964 44.484 33.522 60.871 29 51 51 44 36 58 1 1 1 1 1 1 2819.6 20642 2881 20391 31688 40964 40964 1 WILLEDYR Unmodified 1106.576 0.57604528 2798 Q9NZK5 CECR1 Adenosine deaminase CECR1 yes yes 0 0 0 0 0 7 0 1 71.133 71.133 2 0.019557 21835 TMT1-6 89.298 42.407 68.838 79.05 85.427 81.189 61.648 76.059 65 80 87 80 65 73 1 1 1 1 1 1 13238 20643 2798 20392 31689 40965 40965 1 WIPEAQILGGGQVATLSK Unmodified 1867.0203 0.020348097 2596 Q9C0I1;Q9C0I1-3;Q9C0I1-2 MTMR12 Myotubularin-related protein 12 yes no 0 0 0 0 0 8 0 1 74.711 74.711 3 0.00069837 23293 TMT1-7 62.362 37.104 108.44 99.805 84.387 96.395 128.18 128.53 102 102 88 95 131 124 2 2 2 2 2 2 19004 20644 2596 20393 31690 40966;40967 40966 2 WIQEAETTVNVLVDASHR Unmodified 2067.0385 0.038517356 1138 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 0 6 0 1 80.025 80.025 3 7.4724E-06 26004 TMT1-5 80.975 76.904 15.814 21.862 28.668 29.596 20.868 22.857 15 22 29 29 22 22 1 1 1 1 1 1 4292.4 20645 1138 20394 31691 40968 40968 1 WISIMTER Unmodified 1034.5219 0.52190122 534 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 0 8.5 0.5 1 1 63.335 63.335 2 2.944E-12 18873 TMT1-7 183.26 133.13 352.92 891.89 342.98 459.27 471.05 715.7 335 866 387 447 494 684 2 2 2 2 2 2 95693 20646 534 20395 31692;31693 40969;40970 40969 2 WIVGPMFLYLCER Unmodified 1682.8313 0.83129046 477 P04839 CYBB Cytochrome b-245 heavy chain yes yes 0 0 0 0 0 9 0 1 88.896 88.896 3 0.010344 27017 TMT1-8 53.448 30.569 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20647 477 20396 31694 40971 40971 1 WIVNLIR Unmodified 912.55452 0.55452197 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 9 0 1 69.819 69.819 2 0.017989 19584 TMT1-8 96.048 9.2149 92.165 139.26 81.396 87.964 121 105.28 87 138 87 87 123 102 1 1 1 1 1 1 17923 20648 1353 20397 31695 40972 40972 1 WIYEDVER Unmodified 1108.5189 0.51892433 209 O43852;O43852-3;O43852-5;O43852-6;O43852-13;O43852-14;O43852-11;O43852-10 CALU Calumenin yes no 0 0 0 0 0 4 0 1 56.02 56.02 2 0.00049419 16665 TMT1-3 150.88 119.51 296.4 385.91 351.19 210.05 213.32 421.38 280 387 356 215 227 401 1 1 1 1 1 1 56682 20649 209 20398 31696 40973 40973 1 WIYTDELEFR Unmodified 1370.6507 0.65066678 2830 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 0 6 0 1 70.012 70.012 2 0.036984 21975 TMT1-5 67.169 6.7331 346.02 824.14 477.34 231.26 371.14 549.06 329 804 498 244 383 525 1 1 1 1 1 1 714700 20650 2830 20399 31697 40974 40974 1 WKDFELPGDTLYYR Unmodified 1801.8675 0.86753585 155 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 0 0 0 0 1 7 0 1 68.071 68.071 3 0.0006161 20640 TMT1-6 77.746 58.168 69.093 63.571 55.648 66.127 85.119 82.851 65 65 58 65 87 80 1 1 1 1 1 1 10888 20651 155 20400 31698 40975 40975 1 WKDSDEADLVLAK Unmodified 1488.746 0.74602373 1681 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 1 5.5 0.5 1 1 59.168 59.168 3;4 0.0074347 17699 TMT1-5 61.212 26.258 207.35 286.06 255.24 225.26 289.71 339.25 196 286 262 225 298 326 2 2 2 2 2 2 28249 20652 1681 20401 31699;31700 40976;40977 40977 2 WKDTDEADLVLAK Unmodified 1502.7617 0.76167379 1121 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 1 6 0 1 59.82 59.82 3 0.00013719 18022 TMT1-5 95.264 66.967 107.54 184.72 163.96 114.67 124.71 205.38 102 183 167 116 131 196 1 1 1 1 1 1 16069 20653 1121 20402 31701 40978 40978 1 WKPPMIDNPSYQGIWKPR Unmodified 2212.1252 0.12516429 920 P27824-2;P27824;P27824-3 CANX Calnexin yes no 0 0 0 0 2 9 0 1 61.573 61.573 4 2.25E-14 16383 TMT1-8 120.29 103.08 170.16 164.28 115.4 156.42 150.69 276.06 160 167 123 152 160 263 1 1 1 1 1 1 22648 20654 920 20403 31702 40979 40979 1 WKRPTELLSNPQFIVDGATR Unmodified 2327.2386 0.23861415 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 2 9 0 1 61.217 61.217 4 1.41E-39 16174 TMT1-8 152.66 128.43 399.6 683.03 428.07 404.06 405.4 538.49 378 674 452 400 423 516 3 3 3 3 3 3 25884 20655 536 20404 31703 40980;40981;40982 40981 3 WKSDLDSK Unmodified 977.48181 0.48181054 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 1 7 0 1 45.572 45.572 3 0.037364 11725 TMT1-6 62.303 12.179 276.23 372.8 326.03 260.33 292.86 413.78 261 373 334 261 305 396 2 2 2 2 2 2 15797 20656 1734 20405 31704 40983;40984 40983 2 WLAIDANAR Unmodified 1028.5403 0.54032847 1803 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 0 8 0 1 56.989 56.989 2 0.019595 16354 TMT1-7 78.192 33.231 240.79 289.67 222.48 199.05 276.42 304.45 227 291 231 199 283 293 1 1 1 1 1 1 24525 20657 1803 20406 31705 40985 40985 1 WLAPDGLIFPDR Unmodified 1398.7296 0.7295858 2497 Q99873-2;Q99873-3;Q99873 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 0 7 0 1 77.739 77.739 2 3.9912E-08 24401 TMT1-6 133.23 115.36 30.638 44.028 43.203 36.126 34.419 45.922 29 44 44 36 36 44 1 1 1 1 1 1 6133 20658 2497 20407 31706 40986 40986 1 WLCPLSGK Unmodified 959.48987 0.48987281 2568 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 0 9 0 1 61.561 61.561 2 0.014698 16329 TMT1-8 83.206 47.911 46.228 104.12 77.211 64.403 108.49 74.722 44 102 80 65 109 73 1 1 1 1 1 1 8104.2 20659 2568 20408 31707 40987 40987 1 WLDLKDNPLDPVLAK Unmodified 1735.9509 0.95087155 2362 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 1 8 0 2 76.223 76.223 3;4 2.7134E-08 23949 TMT1-7 115.68 92.12 169.38 233.33 189.02 184.14 187.19 272.88 160 233 196 182 196 261 2 2 2 2 2 2 26821 20660 2362 20409 31708;31709 40988;40989 40989 2 WLGLEEACQLAQFK Unmodified 1691.8341 0.83412723 1228 P50583 NUDT2 Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] yes yes 0 0 0 0 0 8 0 1 79.123 79.123 3 9.4681E-15 25006 TMT1-7 134.99 130.19 84.617 115.92 107.36 71.81 84.052 106.33 80 116 109 73 87 102 2 2 2 2 2 2 12669 20661 1228 20410 31710 40990;40991 40990 2 WLGVLLPK Unmodified 924.57967 0.57967409 739 P16278;P16278-3 GLB1 Beta-galactosidase yes no 0 0 0 0 0 9 0 1 75.799 75.799 2 0.0068307 21995 TMT1-8 99.919 63.524 138.72 189.26 148.73 106.79 185.3 187.66 131 189 153 109 188 181 2 2 2 2 2 2 13083 20662 739 20411 31711 40992;40993 40993 2 WLHFYEMK Unmodified 1152.5426 0.54263666 2617 Q9H0W9-3;Q9H0W9-2;Q9H0W9;Q9H0W9-4 C11orf54 Ester hydrolase C11orf54 yes no 0 0 0 0 0 9 0 1 60.947 60.947 3 0.0018969 16105 TMT1-8 85.212 44.225 92.315 115.93 75.87 73.377 100.49 82.412 87 116 80 73 102 80 1 1 1 1 1 1 6301.1 20663 2617 20412 31712 40994 40994 1 WLHNEDQMAVEK Unmodified 1498.6875 0.68746299 1053 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 0 5 0 1 48.398 48.398 3 2.2259E-09 13332 TMT1-4 147.33 114.13 238.6 328.57 195.72 237.68 225.13 406.12 225 327 210 232 239 387 2 2 2 2 2 2 41841 20664 1053 20413 31713 40995;40996 40995 2 WLHQQTEK Unmodified 1068.5352 0.53524309 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 7 0 1 37.386 37.386 3 0.00367 8521 TMT1-6 89.752 59.677 115.23 167.43 149.02 108.2 109.04 213.29 109 167 152 109 116 203 1 1 1 1 1 1 10579 20665 2789 20414 31714 40997 40997 1 WLITLNK Unmodified 886.52764 0.52763852 513 P06730;P06730-3;P06730-2 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 0 9 0 1 68.187 68.187 2 0.0094566 19018 TMT1-8 124.34 31.876 207.65 283.66 206.66 250.36 329.66 238.97 196 283 218 246 334 233 2 2 2 2 2 2 51840 20666 513 20415 31715 40998;40999 40999 2 WLLAEMLGDLSDSQLK Unmodified 1817.9233 0.92333617 2842 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 0 8 0 1 97.167 97.167 3 0.022876 31728 TMT1-7 44.196 31.216 0 0 7.2651 6.9334 15.13 7.0303 0 0 7 7 15 7 0 0 1 1 1 1 1713.3 20667 2842 20416 31716 41000 41000 1 WLLELSK Unmodified 887.51165 0.5116541 1018 P35573-2;P35573-3;P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 0 9 0 1 71.449 71.449 2 0.034574 20234 TMT1-8 86.953 42.506 46.324 73.089 87.311 49.485 56.07 67.69 44 73 87 51 58 65 1 1 1 1 1 1 6539.6 20668 1018 20417 31717 41001 41001 1 WLLLCNPGLADTIVEK Unmodified 1840.9757 0.97570609 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 9 0 1 83.192 83.192 3 5.9986E-06 24788 TMT1-8 76.341 51.548 69.525 109.2 124.79 55.469 83.997 129.79 66 109 124 59 87 124 2 2 2 2 2 2 17977 20669 648 20418 31718 41002;41003 41002 2 WLLLCNPGLAELIAEK Unmodified 1838.9964 0.99644153 515 P06737-2;P06737 PYGL Glycogen phosphorylase, liver form yes no 0 0 0 0 0 9 0 1 91.443 91.443 2 0.00010241 27944 TMT1-8 73.466 33.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20670 515 20419 31719 41004 41004 1 WLLLTGISAQQNR Unmodified 1498.8256 0.82561145 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 9 0 1 72.716 72.716 3 6.4791E-20 20778 TMT1-8 170.4 129.18 99.703 115.07 97.285 127.33 127.57 105.09 94 116 102 124 131 102 2 2 2 2 2 2 51148 20671 1540 20420 31720 41005;41006 41006 2 WLLYLVK Unmodified 933.56878 0.56877505 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 9 0 1 81.566 81.566 2 0.0085552 24133 TMT1-8 142.42 60.463 395.4 401.7 471.07 401 373.96 453.04 373 410 476 399 390 435 2 2 2 2 2 2 54074 20672 856 20421 31721 41007;41008 41007 2 WLPAEYEDGFSLPYGWTPGVK Unmodified 2411.1474 0.1473991 489 P05164-2;P05164;P05164-3 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain yes no 0 0 0 0 0 7.5 0.5 2 2 87.019 87.019 3;4 2.9718E-10 28028 TMT1-6 94.057 71.836 306.93 555.31 422.37 301.53 470.3 400.19 291 548 435 307 476 388 6 6 6 6 6 6 229190 20673 489 20422 31722;31723;31724;31725 41009;41010;41011;41012;41013;41014 41011 6 WLPAGDALLQMITIHLPSPVTAQK Unmodified 2599.4196 0.41961498 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 9 0 1 93.348 93.348 4 9.7064E-05 28584 TMT1-8 52.061 35.938 77.419 78.455 86.433 58.442 47.486 92.453 73 80 87 59 51 88 2 2 2 2 2 2 12333 20674 685 20423 31726 41015;41016 41015 2 WLPAGTGPQAFSR Unmodified 1386.7044 0.70443369 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 9 0 1 60.422 60.422 2 2.0071E-18 15864 TMT1-8 160.91 105.53 176.94 242.66 173.21 161.28 174.35 250.86 167 242 181 160 182 240 2 2 2 2 2 2 65403 20675 1225 20424 31727 41017;41018 41017 2 WLPELVEHAK Unmodified 1220.6554 0.65535823 1567 Q02252-2;Q02252 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes no 0 0 0 0 0 7 0 1 61.915 61.915 3 0.014927 18166 TMT1-6 59.645 35.659 146.29 180.26 146.98 133.12 69.139 245.34 138 181 152 131 80 232 1 1 1 1 1 1 13976 20676 1567 20425 31728 41019 41019 1 WLPLEANPEVTNQFLK Unmodified 1897.9938 0.993799 721 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 0 8 0 1 79.741 79.741 3 8.1908E-21 25239 TMT1-7 165.86 135.81 77.679 55.434 62.246 98.015 54.095 60.284 73 58 65 94 58 58 1 1 1 1 1 1 20955 20677 721 20426 31729 41020 41020 1 WLPSSSPVTGYR Unmodified 1348.6776 0.67755023 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 9 0 1 57.615 57.615 2 2.079E-09 14773 TMT1-8 145.99 86.135 46.659 50.276 50.347 35.547 42.566 53.151 44 51 51 36 44 51 1 1 1 1 1 1 9411 20678 442 20427 31730 41021 41021 1 WLQDNAENVYVWK Unmodified 1663.7995 0.79945628 535 P07359 GP1BA Platelet glycoprotein Ib alpha chain;Glycocalicin yes yes 0 0 0 0 0 7 0 1 71.977 71.977 3 1.096E-11 22154 TMT1-6 147.39 128.12 878.21 1135 1118.2 790.53 1032.4 1318 830 1140 1133 802 1065 1264 3 3 3 3 3 3 261650 20679 535 20428 31731 41022;41023;41024 41022 3 WLQETSK Unmodified 890.44978 0.44978213 1248 P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 0 7 0 1 49.105 49.105 2 0.010017 13166 TMT1-6 109.86 47.021 139.14 181.77 85.877 94.807 149.73 142.84 131 181 94 94 152 138 1 1 1 1 1 1 9904.7 20680 1248 20429 31732 41025 41025 1 WLQLTHEVEVQYYNIK Unmodified 2062.0524 0.052376507 1724 Q13586;Q13586-2;Q9P246-3;Q9P246;Q9P246-2 STIM1;STIM2 Stromal interaction molecule 1;Stromal interaction molecule 2 yes no 0 0 0 0 0 7.67 0.471 1 2 72.793 72.793 3;4 5.7659E-25 22579 TMT1-7 179.56 164.11 161.69 279.76 179.43 167.58 226.41 249.38 153 276 189 167 232 240 3 3 3 3 3 3 39223 20681 1724 20430 31733;31734;31735 41026;41027;41028;41029 41027 4 WLSDECTNAVVNFLSR Unmodified 1909.8992 0.89924668 284 O75521-2;O75521 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 0 0 0 0 0 8 0 1 80.76 80.76 3 0.00061061 25655 TMT1-7 69.069 54.986 23.262 36.283 27.055 45.535 50.242 29.48 22 36 29 44 51 29 1 1 1 1 1 1 4203.2 20682 284 20431 31736 41030 41030 1 WLSTSIPEAQWHSSLAR Unmodified 1967.9854 0.98535957 1176 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 0 9 0 1 61.344 61.344 3 1.1648E-09 16255 TMT1-8 87.287 59.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20683 1176 20432 31737 41031 41031 1 WLVEPQIDDPNSNLEEAINEAEAITSVNSLGSK Unmodified 3581.7373 0.73731612 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 5.5 0.5 1 1 97.719 97.719 4 2.0721E-20 32436 TMT1-4 98.657 87.273 51.966 62.699 49.594 35.117 67.824 49.233 49 63 51 36 68 48 3 3 3 3 3 3 19921 20684 333 20433 31738;31739 41032;41033;41034 41032 3 WLWEPTAPEK Unmodified 1255.6237 0.62372375 3059 Q9Y6I9 TEX264 Testis-expressed sequence 264 protein yes yes 0 0 0 0 0 7 0 1 67.872 67.872 3 0.0022411 20583 TMT1-6 82.029 52.362 46.437 88.513 55.269 43.6 63.67 67.473 44 87 58 44 65 65 1 1 1 1 1 1 9890.2 20685 3059 20434 31740 41035 41035 1 WMEACLGEDLPPTTELEEGLR Unmodified 2445.1192 0.1192118 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 4 0 1 78.602 78.602 3 0.031682 25550 TMT1-3 35.195 25.664 15.934 14.642 14.591 15.263 13.941 30.516 15 15 15 15 15 29 1 1 1 1 1 1 3607.1 20686 1139 20435 31741 41036 41036 1 WNDDACHK Unmodified 1044.4083 0.40832802 697 P14151;P14151-2 SELL L-selectin yes no 0 0 0 0 0 5 0 1 34.139 34.139 3 0.0028005 7715 TMT1-4 62.582 46.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20687 697 20436 31742 41037 41037 1 WNDEHCLK Unmodified 1100.4709 0.47092828 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 5.5 0.5 1 1 39.846 39.846 3 0.0019048 10029 TMT1-4 100.02 92.418 843.98 886.92 951.1 579.75 913.21 1050.6 796 902 956 598 933 1010 3 3 3 3 3 3 81067 20688 733 20437 31743;31744 41038;41039;41040 41039 3 WNNLLEEIAEQLQSSK Unmodified 1900.9531 0.95305639 2224 Q8NF91-4;Q8NF91;Q8NF91-8;Q8NF91-2 SYNE1 Nesprin-1 yes no 0 0 0 0 0 8 0 1 95.213 95.213 3 0.0015332 31032 TMT1-7 48.216 44.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20689 2224 20438 31745 41041 41041 1 WNQQQLDDLYLIAICHR Unmodified 2185.0739 0.073857005 2379 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 0 8 0 1 74.599 74.599 3 3.9489E-06 23270 TMT1-7 89.358 75.343 38.21 51.239 26.8 29.441 35.02 37.377 36 51 29 29 36 36 1 1 1 1 1 1 7435.7 20690 2379 20439 31746 41042 41042 1 WNSVSPASAGK Unmodified 1102.5407 0.5407224 2107 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 0 8 0 1 46.698 46.698 3 2.8118E-08 12297 TMT1-7 115.29 84.414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20691 2107 20440 31747 41043 41043 1 WNTDNTLGTEIAIEDQICQGLK Unmodified 2518.201 0.20096759 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 5.33 0.471 2 1 80.481 80.481 3;4 5.1154E-24 25923 TMT1-4 129.02 102.88 185.47 184.73 230.95 180.89 168.79 173.21 175 189 232 181 175 167 4 4 4 4 4 4 57630 20692 1119 20441 31748;31749;31750 41044;41045;41046;41047 41044 4 WNTDNTLGTEISWENK Unmodified 1906.8697 0.86972069 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 0 5.5 0.5 1 1 67.475 67.475 3 8.6987E-16 20987 TMT1-5 130.4 101.76 306.18 513.13 403.24 326.54 421.86 467.66 290 508 416 328 433 450 3 3 3 3 3 3 91344 20693 2959 20442 31751;31752 41048;41049;41050 41049 3 WNTDNTLGTEITVEDQLAR Unmodified 2175.0444 0.044390595 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 4 0 1 68.244 68.244 3 1.8103E-30 21506 TMT1-3 142.86 110.45 92.337 93.327 91.318 97.099 68.78 90.779 87 95 94 95 73 87 2 2 2 2 2 2 46303 20694 833 20443 31753 41051;41052 41052 2 WNTDSVEEFLSEK Unmodified 1582.7151 0.71511753 229 O60613 SEP15 15 kDa selenoprotein yes yes 0 0 0 0 0 5 0 1 76.087 76.087 3 1.1702E-06 24221 TMT1-4 115.24 84.242 61.477 56.236 79.598 73.588 77.447 83.07 58 58 80 73 80 80 1 1 1 1 1 1 15294 20695 229 20444 31754 41053 41053 1 WNTEDKVSHVSTGGGASLELLEGK Unmodified 2513.2398 0.23979594 397 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 1 7 0.894 2 1 2 59.157 59.157 4;5 4.3318E-110 17716 TMT1-5 243.24 210.29 859.7 1299.6 1025.1 936.03 913.21 1487.7 813 1292 1062 928 963 1420 5 5 5 5 5 5 155510 20696 397 20445 31755;31756;31757;31758;31759 41054;41055;41056;41057;41058 41054 5 WNTTLYEGTWR Unmodified 1425.6677 0.66771383 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 7.5 0.5 1 1 61.845 61.845 2 1.1946E-11 18211 TMT1-6 172.21 130.56 276.03 514.88 419.87 294.2 345.09 431.48 262 508 430 298 357 414 3 3 3 3 3 3 68386 20697 536 20446 31760;31761 41059;41060;41061 41060 3 WPEVDDDSIEDLGEVKK Unmodified 1972.9266 0.92656687 181 O43583 DENR Density-regulated protein yes yes 0 0 0 0 1 4 0 1 66.983 66.983 4 1.1771E-05 20953 TMT1-3 83.106 46.582 115.39 191.62 101.69 93.692 158.97 119.12 109 189 109 94 160 116 1 1 1 1 1 1 13952 20698 181 20447 31762 41062 41062 1 WPFWLSPR Unmodified 1087.5603 0.56033563 902;7 A2RTX5-2;A2RTX5;P26639;P26639-2 TARSL2;TARS Probable threonine--tRNA ligase 2, cytoplasmic;Threonine--tRNA ligase, cytoplasmic no no 0 0 0 0 0 9 0 1 76.413 76.413 2 0.0069152 22253 TMT1-8 101.33 55.647 60.805 101.85 153.93 92.423 60.875 83.543 58 102 152 94 65 80 1 1 1 1 1 1 14629 20699 7;902 20448 31763 41063 41063 1 WPGSSLYYEVEILSHDSTSQLYTVK Unmodified 2901.4073 0.4072552 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 7 0 1 83.438 83.438 4 0.030575 26689 TMT1-6 29.745 17.665 15.781 29.326 27.848 37.968 43.261 29.68 15 29 29 37 44 29 1 1 1 1 1 1 5106.7 20700 1794 20449 31764 41064 41064 1 WPIVGVR Unmodified 825.48611 0.48610806 1112 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 0 9 0 1 58 58 2 0.023939 14987 TMT1-8 92.785 63.683 123.1 129.07 120.15 102.67 87.836 168.05 116 131 123 102 94 160 1 1 1 1 1 1 21935 20701 1112 20450 31765 41065 41065 1 WPLYMSTK Unmodified 1024.5052 0.50518852 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 9 0 1 64.039 64.039 2 0.0071984 17289 TMT1-8 106.04 61.907 207.68 244.88 234.88 203.43 236.78 325.84 196 247 240 203 246 312 2 2 2 2 2 2 26913 20702 1164 20451 31766 41066;41067 41066 2 WPVSMFEK Unmodified 1022.4895 0.48953845 648 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 0 9 0 1 69.771 69.771 2 0.0074877 19599 TMT1-8 95.815 64.443 138.54 180.12 186.91 136.64 162.19 180.86 131 181 189 138 167 174 2 2 2 2 2 2 13625 20703 648 20452 31767 41068;41069 41068 2 WQAFQTLVSER Unmodified 1363.6884 0.68844927 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 9 0 1 67.856 67.856 2 0.00075421 18798 TMT1-8 94.791 57.68 69.086 55.996 63.274 75.149 46.205 107.41 65 58 65 73 51 102 1 1 1 1 1 1 15655 20704 651 20453 31768 41070 41070 1 WQALAEQQEK Unmodified 1229.6041 0.60405094 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 6 0 1 51.998 51.998 3 0.0072054 14896 TMT1-5 67.08 27.295 153.46 219.83 170.05 144.16 222.95 229.22 145 219 176 145 227 221 1 1 1 1 1 1 28533 20705 322 20454 31769 41071 41071 1 WQALLVQIR Unmodified 1125.6659 0.66586334 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 0 9 0 1 71.451 71.451 2 0.017077 20236 TMT1-8 81.642 46.835 54.058 64.561 57.044 35.152 42.327 60.62 51 65 58 36 44 58 1 1 1 1 1 1 4360.8 20706 1763 20455 31770 41072 41072 1 WQAVLAQTDVR Unmodified 1285.6779 0.67788459 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 8 0 1 60.464 60.464 3 4.401E-05 17775 TMT1-7 107.03 74.528 69.22 56.368 40.482 76.207 62.171 67.516 65 58 44 73 65 65 1 1 1 1 1 1 14936 20707 1833 20456 31771 41073 41073 1 WQCDAVLYGEQGQPWGR Unmodified 2048.9163 0.91629373 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6 0 1 64.911 64.911 3 0.0092498 20022 TMT1-5 49.865 31.269 61.554 48.896 72.823 65.532 62.368 76.038 58 51 73 65 65 73 1 1 1 1 1 1 9921.6 20708 647 20457 31772 41074 41074 1 WQDEDGKK Unmodified 1004.4563 0.45632407 1061 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 1 5 0 1 37.573 37.573 3 0.019638 9047 TMT1-4 71.016 49.459 194.66 534.99 372.76 289.43 457.42 486.9 186 521 387 293 466 469 1 1 1 1 1 1 36898 20709 1061 20458 31773 41075 41075 1 WQEEMELYR Unmodified 1282.5652 0.56522259 431 P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 0 0 0 0 0 4 0 1 58.836 58.836 2 0.006726 17814 TMT1-3 94.409 54.862 46.72 58 33.614 36.432 48.535 91.357 44 58 36 36 51 87 1 1 1 1 1 1 13179 20710 431 20459 31774 41076 41076 1 WQGNDIVVK Unmodified 1057.5556 0.55564418 1700 Q13418;Q13418-2;Q13418-3 ILK Integrin-linked protein kinase yes no 0 0 0 0 0 6 0 2 53.653 53.653 2;3 0.0016806 15567 TMT1-5 90.761 67.525 1031 1378.9 1378.8 957.32 1275.4 1451.7 975 1383 1395 973 1309 1396 2 2 2 2 2 2 217880 20711 1700 20460 31775;31776 41077;41078 41078 2 WQNSYSIK Unmodified 1024.4978 0.49779495 1697;1877 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 0 8 0 1 50.751 50.751 2 0.0036619 13871 TMT1-7 130.31 58.968 176.5 273.84 219.5 148.85 223.43 208.96 167 272 225 152 227 202 1 1 1 1 1 1 36769 20712 1697;1877 20461 31777 41079 41079 1 WQPGEEPAGSVVQDSR Unmodified 1740.8067 0.80672651 3028 Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 0 0 0 3 0 1 49.481 49.481 3 0.027309 15088 TMT1-2 41.86 39.2 54.39 42.82 19.624 30.007 27.665 37.587 51 44 22 29 29 36 1 1 1 1 1 1 5141.5 20713 3028 20462 31778 41080 41080 1 WQTLLSVDDLVEK Unmodified 1544.8086 0.80862399 725 P15586-2;P15586 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 0 6.5 0.5 1 1 81.493 81.493 2;3 2.59E-07 26489 TMT1-5 96.734 64.891 54.062 64.573 56.316 51.487 47.843 91.377 51 65 58 51 51 87 1 1 1 1 1 1 8792.1 20714 725 20463 31779;31780 41081;41082 41081 2 WRVENQENVSNLVIEDTELK Unmodified 2414.2078 0.20776753 1555;1556 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 no no 0 0 0 0 1 5 0 1 64.948 64.948 4 0.00053018 19857 TMT1-4 57.009 37.112 161.54 141.02 141.73 132.09 140.69 143.09 152 145 145 131 145 138 1 1 1 1 1 1 9947.5 20715 1555;1556 20464 31781 41083 41083 1 WSATPPTCK Unmodified 1046.4855 0.48551571 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 8 0 1 45.561 45.561 2 0.00072725 11818 TMT1-7 129.72 81.218 265.15 476.34 477.93 379.95 483.52 397.68 252 472 485 382 492 386 2 2 2 2 2 2 62865 20716 733 20465 31782 41084;41085 41084 2 WSDNKDDILK Unmodified 1232.6037 0.60371659 1785 Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 0 0 0 1 6 0 1 52.24 52.24 3 0.0070836 15033 TMT1-5 57.019 24.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20717 1785 20466 31783 41086 41086 1 WSDVAGLEGAK Unmodified 1131.556 0.55603812 267 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 0 6 0 1 58.725 58.725 3 0.014814 17646 TMT1-5 57.019 29.69 184.65 239.47 142.32 153.78 264.22 263.22 174 239 152 153 268 254 2 2 2 2 2 2 14177 20718 267 20467 31784 41087;41088 41088 2 WSEPNEEELIK Unmodified 1372.6511 0.65106071 1065 P39748-2;P39748 FEN1 Flap endonuclease 1 yes no 0 0 0 0 0 4 0 1 58.859 58.859 3 4.8272E-05 17747 TMT1-3 105.94 80.296 77.249 124.39 76.169 56.975 99.926 120.8 73 123 80 58 102 116 1 1 1 1 1 1 13390 20719 1065 20468 31785 41089 41089 1 WSEQSDYLELLVK Unmodified 1608.8035 0.80353861 2009 Q6GTX8-4;Q6GTX8-3;Q6GTX8-2;Q6GTX8 LAIR1 Leukocyte-associated immunoglobulin-like receptor 1 yes no 0 0 0 0 0 6 0 1 78.859 78.859 3 0.0034953 25508 TMT1-5 49.298 31.809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20720 2009 20469 31786 41090 41090 1 WSGLLVTVGEVLEK Unmodified 1528.8501 0.85009487 2437 Q96M27;Q96M27-3;Q96M27-2 PRRC1 Protein PRRC1 yes no 0 0 0 0 0 8 0 1 91.374 91.374 3 3.6926E-06 29496 TMT1-7 102.52 68.931 77.262 133.06 66.624 89.539 84.042 82.882 73 131 73 87 87 80 2 2 2 2 2 2 14836 20721 2437 20470 31787 41091;41092 41091 2 WSGNESTDEFSELSFR Unmodified 1889.8068 0.80678609 275 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 yes yes 0 0 0 0 0 4 0 1 66.997 66.997 3 5.7751E-10 20955 TMT1-3 94.882 86.062 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20722 275 20471 31788 41093 41093 1 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK Unmodified 3470.7106 0.71064786 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 0 7 0 1 66.01 66.01 4 8.6672E-14 19849 TMT1-6 84.067 69.694 54.182 57.351 42.301 35.751 57.215 52.733 51 58 44 36 58 51 1 1 1 1 1 1 8484 20723 954 20472 31789 41094 41094 1 WSLSQAVTGLIDTGR Unmodified 1602.8366 0.83657007 2037 Q6PGP7 TTC37 Tetratricopeptide repeat protein 37 yes yes 0 0 0 0 0 9 0 1 78.855 78.855 3 1.7641E-05 23129 TMT1-8 77.746 52.569 61.395 63.564 87.1 65.34 85.448 74.314 58 65 87 66 87 72 2 2 2 2 2 2 3526.6 20724 2037 20473 31790 41095;41096 41095 2 WSPIASTLPELVQR Unmodified 1595.8671 0.86714192 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 8 0 1 73.206 73.206 3 8.3842E-05 22692 TMT1-7 87.083 60.371 153.94 180.12 124.61 124.52 132.64 174.24 145 181 131 123 138 167 2 2 2 2 2 2 34357 20725 1720 20474 31791 41097;41098 41097 2 WSRPQAPITGYR Unmodified 1430.7419 0.74188183 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 1 9 0 1 42.52 42.52 3 0.021054 8931 TMT1-8 49.333 29.499 68.966 79.405 63.675 34.639 48.617 91.355 65 80 65 36 51 87 1 1 1 1 1 1 4125.1 20726 442 20475 31792 41099 41099 1 WSSLACNIALDAVK Unmodified 1546.7814 0.78136338 1178 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 0 8 0 2 74.452 74.452 2;3 4.6007E-18 23204 TMT1-7 158.42 123.72 131.77 143.82 94.306 127.56 124.92 181.92 124 145 101 124 131 174 2 2 2 2 2 2 38533 20727 1178 20476 31793;31794 41100;41101 41100 2 WSTDDVQINDISLQDYIAVK Unmodified 2322.138 0.13795663 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 6 0 1 81.134 81.134 3 1.0614E-07 26391 TMT1-5 69.763 60.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20728 1136 20477 31795 41102 41102 1 WSVDSIHGK Unmodified 1027.5087 0.50869399 2682 Q9HBI1-3;Q9HBI1;Q9HBI1-2 PARVB Beta-parvin yes no 0 0 0 0 0 7 0 1 45.492 45.492 3 0.00076056 11768 TMT1-6 100.57 75.777 176.17 266.42 282.46 178.67 239.79 332.15 167 266 284 183 248 318 1 1 1 1 1 1 37710 20729 2682 20478 31796 41103 41103 1 WSVIVIPDVTVSDSGLYR Unmodified 2005.052 0.052042156 1872 Q15762 CD226 CD226 antigen yes yes 0 0 0 0 0 8 0 2 83.219 83.219 2;3 3.5005E-10 26671 TMT1-7 106.93 87.643 54.069 73.227 47.811 60.731 48.187 68.981 51 73 51 59 51 66 2 2 2 2 2 2 49216 20730 1872 20479 31797;31798 41104;41105 41105 2 WTAISALEYGVPVTLIGEAVFAR Unmodified 2462.3209 0.32094679 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 9 0 1 101.2 101.2 3 4.2234E-48 31534 TMT1-8 157.88 139.74 23.243 37.309 29.424 15.274 28.84 53.543 22 37 30 15 30 51 2 2 2 1 2 2 20691 20731 1260 20480 31799 41106;41107 41107 2 WTAPEAALYGR Unmodified 1233.6142 0.6142217 673;549;505 P12931;P12931-2;P06241-3;P06241-2;P06241;P07947 SRC;FYN;YES1 Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes no no 0 0 0 0 0 6.5 0.5 1 1 56.732 56.732 2 1.3043E-08 16831 TMT1-5 162.34 66.73 408.37 420.52 438.63 301 330.67 415.9 385 428 443 305 343 399 3 3 3 3 3 3 86850 20732 673;505;549 20481 31800;31801 41108;41109;41110 41109 3 WTAPEAINFGCFTIK Unmodified 1753.8498 0.84977729 550 P07948-2;P07948 LYN Tyrosine-protein kinase Lyn yes no 0 0 0 0 0 9 0 1 78.862 78.862 3 2.5901E-19 23113 TMT1-8 137.93 108.96 53.894 80.293 71.341 57.381 93.657 59.155 51 80 73 58 94 58 1 1 1 1 1 1 12924 20733 550 20482 31802 41111 41111 1 WTAPEAINYGTFTIK Unmodified 1710.8617 0.86172219 504 P06239-3;P06239 LCK Tyrosine-protein kinase Lck yes no 0 0 0 0 0 8 0 1 72.43 72.43 3 0.033312 22492 TMT1-7 41.482 21.904 37.968 74.311 47.876 59.628 48.531 60.443 36 73 51 58 51 58 1 1 1 1 1 1 6544.9 20734 504 20483 31803 41112 41112 1 WTCPCVCTGSSTR Unmodified 1570.6327 0.63266701 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 8 0 1 44.84 44.84 3 0.0043524 11577 TMT1-7 63.989 59.155 46.478 81.072 54.704 66.311 78.331 67.055 44 80 58 65 80 65 1 1 1 1 1 1 10916 20735 471 20484 31804 41113 41113 1 WTDLFDNK Unmodified 1037.4818 0.48181054 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 7 0 1 69.611 69.611 2 0.0051369 21243 TMT1-6 120.07 68.219 153.26 205.24 216.04 102.84 181.8 172.83 145 206 216 109 184 167 1 1 1 1 1 1 20165 20736 934 20485 31805 41114 41114 1 WTDSPPMCEAIK Unmodified 1433.6319 0.63192195 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 6 0 1 58.769 58.769 3 1.1017E-07 17600 TMT1-5 120.87 97.636 138.08 272.72 186.85 183.27 182.06 210.14 131 268 196 181 189 202 1 1 1 1 1 1 18522 20737 733 20486 31806 41115 41115 1 WTELAGCTADFR Unmodified 1425.6347 0.63469914 1656 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 0 6 0 1 61.899 61.899 2 0.00043436 18809 TMT1-5 99.752 82.726 115.58 159.77 96.31 87.209 172.02 174.18 109 159 102 88 174 168 2 2 2 2 2 2 25764 20738 1656 20487 31807 41116;41117 41116 2 WTEYGLTFTEK Unmodified 1373.6503 0.65033243 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 6.5 0.5 2 2 67.845 67.845 2;3 8.0318E-07 21152 TMT1-5 145.46 109.92 577.51 729.81 604.07 572.05 562.97 812.22 545 732 625 566 590 777 6 6 6 6 6 6 141890 20739 833 20488 31808;31809;31810;31811 41118;41119;41120;41121;41122;41123 41118 6 WTGMIIGPPR Unmodified 1126.5957 0.59573486 1697;1877 Q13404-8;Q13404;Q13404-7;Q13404-2;Q13404-1;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 0 9 0 1 63.092 63.092 2 0.0073627 16872 TMT1-8 85.67 41.535 261.71 363.34 249.92 210.09 299.98 334.69 247 362 261 211 307 322 2 2 2 2 2 2 36081 20740 1697;1877 20489 31812 41124;41125 41124 2 WTLLEEEAVGWQER Unmodified 1744.842 0.84204938 1633 Q0VD83;Q0VD83-3;Q0VD83-2 APOBR Apolipoprotein B receptor yes no 0 0 0 0 0 5 0 1 76.083 76.083 3 0.00015388 24216 TMT1-4 81.632 56.696 30.528 67.466 41.825 35.488 72.676 59.754 29 66 44 36 73 58 1 1 1 1 1 1 8805.4 20741 1633 20490 31813 41126 41126 1 WTNFPGLQQLFLK Unmodified 1590.8558 0.85584895 332 O94915 FRYL Protein furry homolog-like yes yes 0 0 0 0 0 9 0 1 86.675 86.675 3 0.0083507 26186 TMT1-8 53.001 14.644 30.671 66.786 18.296 30.215 20.839 22.857 29 65 22 29 22 22 1 1 1 1 1 1 2744.4 20742 332 20491 31814 41127 41127 1 WTNIPLLVK Unmodified 1082.6488 0.64881629 2441 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 0 9 0 1 73.454 73.454 2 0.02031 20999 TMT1-8 74.162 35.924 37.75 88.814 72.301 26.17 64.728 59.981 36 87 73 29 65 58 1 1 1 1 1 1 6221.1 20743 2441 20492 31815 41128 41128 1 WTPVIKDVMEDAVEDR Unmodified 1901.9193 0.91931342 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 1 5.5 0.5 1 1 73.074 73.074 3 8.4048E-06 23171 TMT1-5 90.754 75.825 115.49 160.6 110.72 127.05 100.33 228.46 109 160 117 124 109 217 2 2 2 2 2 2 13663 20744 1878 20493 31816;31817 41129;41130 41130 2 WTQTLSELDLAVPFCVNFR Unmodified 2295.1358 0.13578856 2956 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 0 9 0 1 91.874 91.874 3 2.6503E-10 28094 TMT1-8 92.474 71.737 23.368 21.469 21.744 14.689 21.809 15.368 22 22 22 15 22 15 1 1 1 1 1 1 3797.8 20745 2956 20494 31818 41131 41131 1 WTTEQQQR Unmodified 1075.5047 0.50467125 1818 Q15041;Q15041-2;Q15041-3 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 0 0 0 0 0 5 0 1 32.744 32.744 2 0.0058126 7156 TMT1-4 113.71 94.07 46.717 57.994 33.963 28.595 57.287 60.193 44 58 36 29 58 58 1 1 1 1 1 1 5469.8 20746 1818 20495 31819 41132 41132 1 WVGGPEIELIAIATGGR Unmodified 1737.9414 0.94136949 1161 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 0 7.33 0.471 2 1 87.585 87.585 2;3 8.9251E-27 28150 TMT1-7 162.69 136.06 70.549 140.29 106.65 80.742 76.259 138.54 67 138 110 81 81 132 4 4 4 4 4 4 47028 20747 1161 20496 31820;31821;31822 41133;41134;41135;41136 41135 4 WVGPLPVEATLAK Unmodified 1379.7813 0.78128702 2372 Q96BP3 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes yes 0 0 0 0 0 8 0 1 72.154 72.154 3 0.00058947 22332 TMT1-7 60.448 34.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20748 2372 20497 31823 41137 41137 1 WVGVILDEAK Unmodified 1128.6179 0.61791009 1762 Q14203-3;Q14203-4;Q14203-6;Q14203 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 0 7 0 1 71.828 71.828 2 0.00056024 22076 TMT1-6 113.62 70.498 61.459 48.631 89.073 41.166 86.01 90.288 58 51 87 44 87 87 1 1 1 1 1 1 15239 20749 1762 20498 31824 41138 41138 1 WVIYNDQK Unmodified 1064.5291 0.52909508 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 7 0 1 56.169 56.169 3 0.007834 15930 TMT1-6 77.282 45.979 77.44 93.623 70.052 65.702 62.104 83.508 73 94 73 65 65 80 1 1 1 1 1 1 5885.9 20750 1122 20499 31825 41139 41139 1 WVNSHLAR Unmodified 981.51445 0.51444807 1546;651 Q01082;Q01082-3;Q01082-2;O15020-2;O15020;P11277-2;P11277;P11277-3 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 0 0 0 0 0 8 0 1 35.316 35.316 3 0.0020352 7781 TMT1-7 99.136 87.914 76.984 132.29 114 71.546 77.028 98.006 73 131 116 73 80 94 1 1 1 1 1 1 10160 20751 1546;651 20500 31826 41140 41140 1 WVPEITHHCPK Unmodified 1402.6816 0.68158975 1363 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 0 7.5 0.5 1 1 42.108 42.108 4 0.00023192 10458 TMT1-6 97.734 86.12 826.15 1164.9 1007.2 866.77 1049.2 1092.6 781 1163 1035 866 1077 1053 3 3 3 3 3 3 75206 20752 1363 20501 31827;31828 41141;41142;41143 41141 3 WVPENSEIVWSIK Unmodified 1585.814 0.81404372 2569 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 0 8 0 1 74.638 74.638 3 0.0016707 23263 TMT1-7 71.879 47.688 30.535 66.408 41.473 44.832 41.882 60.633 29 65 44 44 44 58 1 1 1 1 1 1 13815 20753 2569 20502 31829 41144 41144 1 WVPFDGDDIQLEFVR Unmodified 1834.889 0.88899957 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 6 0 1 83.023 83.023 3 2.884E-05 27101 TMT1-5 89.624 84.264 23.298 36.384 20.853 14.614 28.629 30.097 22 36 22 15 29 29 1 1 1 1 1 1 9154.6 20754 1063 20503 31830 41145 41145 1 WVPPLIGELYGLR Unmodified 1511.85 0.85003529 2810 Q9P0J0;Q9P0J0-2 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 0 0 0 0 0 9 0 3 88.323 88.323 2;3 1.2665E-10 26797 TMT1-8 115.42 71.024 30.809 36.949 20.452 22 43.995 29.659 29 37 22 22 44 29 1 1 1 1 1 1 8407.3 20755 2810 20504 31831;31832;31833 41146;41147;41148 41148 3 WVQGEDILSLPEGTAR Unmodified 1769.8948 0.89481323 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 5 0 1 69.599 69.599 3 2.703E-18 21643 TMT1-4 147.07 109.97 108.31 98.373 106.91 102.77 124.45 228.84 102 101 109 102 131 218 2 2 2 2 2 2 84725 20756 772 20505 31834 41149;41150 41149 2 WVTALELAK Unmodified 1029.5859 0.58588168 839 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 0 8 0 1 70.366 70.366 2 0.00024022 21634 TMT1-7 144.09 75.354 108.22 138.05 88.981 87.516 120.77 112.75 102 138 94 87 123 109 1 1 1 1 1 1 9298.2 20757 839 20506 31835 41151 41151 1 WVTYFNKPDIDAWELR Unmodified 2052.0105 0.010511692 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 1 8.5 0.5 1 1 74.966 74.966 3 3.1624E-12 23454 TMT1-7 128.45 119.85 238.5 359.58 186.7 228.23 349.2 369.53 225 356 203 225 356 356 2 2 2 2 2 2 79710 20758 815 20507 31836;31837 41152;41153 41152 2 WVTYFNKPDIDAWELRK Unmodified 2180.1055 0.10547471 815 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 2 9 0 1 68.946 68.946 4 8.1296E-19 19261 TMT1-8 124.46 83.11 367.67 619.04 439.06 320.03 421.66 664.88 348 612 455 324 439 635 1 1 1 1 1 1 36259 20759 815 20508 31838 41154 41154 1 WVVIGDENYGEGSSR Unmodified 1666.7587 0.75871368 2492 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 0 4.5 0.5 1 1 60.297 60.297 3 1.3587E-08 18321 TMT1-3 115.82 103.43 84.493 155.51 94.557 111.53 104.75 120.67 80 153 101 109 109 116 2 2 2 2 2 2 31688 20760 2492 20509 31839;31840 41155;41156 41155 2 WVVPVLPK Unmodified 936.57967 0.57967409 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 9 0 1 69.307 69.307 2 0.0067857 19387 TMT1-8 99.171 60.149 77.754 55.641 49.507 43.659 78.823 83.031 73 58 51 44 80 80 1 1 1 1 1 1 7433.4 20761 2338 20510 31841 41157 41157 1 WVWAPSFPACK Unmodified 1347.6434 0.64341333 377 O95866-7;O95866-2;O95866-4;O95866-5;O95866-3;O95866-6;O95866 G6B Protein G6b yes no 0 0 0 0 0 9 0 1 72.98 72.98 3 1.2194E-06 20882 TMT1-8 111.06 70.48 454.5 683.19 579.02 409.54 565.5 803.62 430 680 592 416 585 769 2 2 2 2 2 2 107480 20762 377 20511 31842 41158;41159 41159 2 WWTCFVK Unmodified 1025.4793 0.47930812 130 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 0 9 0 1 73.246 73.246 2 0.0078143 20894 TMT1-8 138.07 81.511 502.66 1129.2 943.26 759.45 740.15 1158.9 479 1108 968 759 779 1107 2 2 2 2 2 2 126260 20763 130 20512 31843 41160;41161 41160 2 WYELGHK Unmodified 931.4552 0.45520186 1644 Q12797-10;Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 0 0 0 0 0 7 0 1 47.475 47.475 3 0.0002389 12523 TMT1-6 97.071 52.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20764 1644 20513 31844 41162 41162 1 WYFDVTEGK Unmodified 1143.5237 0.52367535 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 7 0 1 67.509 67.509 2 0.0020829 20496 TMT1-6 106.68 65.256 199.87 290.99 244.86 258.28 252.35 256.1 189 290 254 254 261 247 2 2 2 2 2 2 44390 20765 482 20514 31845 41163;41164 41164 2 WYHGHMSGGQAETLLQAK Unmodified 2012.9527 0.95267924 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 7 0 1 48.85 48.85 4 2.4119E-06 13057 TMT1-6 87.447 69.958 107.79 160.6 141.95 106.91 200.45 203.22 102 160 145 109 203 196 1 1 1 1 1 1 10306 20766 936 20515 31846 41165 41165 1 WYHPGCFVK Unmodified 1192.5488 0.54878467 606 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 0 9 0 1 49.823 49.823 3 0.0085595 11703 TMT1-8 59.8 34.583 130.47 174.56 106.33 180.84 159.83 190.52 123 174 116 174 167 183 1 1 1 1 1 1 20121 20767 606 20516 31847 41166 41166 1 WYLENVYPELR Unmodified 1480.7351 0.73506511 1636 Q10471 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 0 0 0 0 0 6 0 1 71.415 71.415 3 0.00063089 22588 TMT1-5 64.55 44.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20768 1636 20517 31848 41167 41167 1 WYNLAIGSTCPWLK Unmodified 1707.8443 0.84429799 443 P02760 AMBP Protein AMBP;Alpha-1-microglobulin;Inter-alpha-trypsin inhibitor light chain;Trypstatin yes yes 0 0 0 0 0 9 0 1 78.749 78.749 3 4.476E-05 23085 TMT1-8 80.469 57.936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20769 443 20518 31849 41168 41168 1 WYVNLHSLMDR Oxidation (M) 1448.6871 0.68706906 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 1 0 0 8 0 1 56.144 56.144 3 0.008009 16034 TMT1-7 46.706 25.455 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20770 333 20519 31850 41169 41169 32 1 WYVNLHSLMDR Unmodified 1432.6922 0.69215444 333 O94919 ENDOD1 Endonuclease domain-containing 1 protein yes yes 0 0 0 0 0 9 0 1 64.315 64.315 3 7.4611E-09 17407 TMT1-8 138.75 102.81 146.26 165.07 164.61 122.28 125.13 182.98 138 167 167 123 131 175 1 1 1 1 1 1 32537 20771 333 20519 31851 41170 41170 1 WYVVQTNYDR Unmodified 1342.6306 0.63060004 1714 Q13510-2;Q13510;Q13510-3 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 0 0 0 0 0 6.5 0.5 1 1 55.677 55.677 2 0.00055557 16366 TMT1-5 83.438 69.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20772 1714 20520 31852;31853 41171;41172 41171 2 WYYNAAGFNK Unmodified 1232.5615 0.56145784 715 P14927;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 0 0 9 0 1 60.284 60.284 2 0.00019304 15811 TMT1-8 128.69 102.08 68.966 79.405 63.695 34.184 72.736 59.752 65 80 65 36 73 58 1 1 1 1 1 1 14105 20773 715 20521 31854 41173 41173 1 YAAELAENR Unmodified 1035.4985 0.49852324 1658 Q12913 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes yes 0 0 0 0 0 2.5 0.5 1 1 39.947 39.947 2 0.00011833 11217 TMT1-2 149.82 117.88 184.87 162.37 170.48 159.79 203.75 279.87 174 167 174 159 211 268 2 2 2 2 2 2 35771 20774 1658 20522 31855;31856 41174;41175 41175 2 YAAELHLVHWNTK Unmodified 1580.81 0.80996139 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 0 7.67 0.471 1 2 51.345 51.345 3;4 6.4687E-11 14191 TMT1-7 129.76 102.73 1143.1 1428.5 1081.2 1145.4 1053.6 1017.8 1078 1432 1131 1125 1091 983 4 4 4 4 4 4 151410 20775 406 20523 31857;31858;31859 41176;41177;41178;41179 41178 4 YAALYQPLFDK Unmodified 1327.6812 0.68123863 2488 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 0 8 0 1 69.814 69.814 3 0.0054927 21419 TMT1-7 66.595 37.248 91.816 177.14 107.8 148.7 178.63 203.84 87 174 116 145 184 196 1 1 1 1 1 1 22633 20776 2488 20524 31860 41180 41180 1 YAASSYLSLTPEQWK Unmodified 1742.8516 0.85155143 22;620 P0DOX8;B9A064;P0CG04;P0DOY3;P0DOY2;P0CF74;A0M8Q6 IGLL5;IGLC1;IGLC6;IGLC7 Immunoglobulin lambda-like polypeptide 5;Ig lambda-1 chain C regions;Ig lambda-6 chain C region;Ig lambda-7 chain C region no no 0 0 0 0 0 7.67 0.471 1 2 69.321 69.321 2;3 3.7127E-27 21204 TMT1-7 184.36 153.81 138.65 157.74 188.2 137.71 101.64 176.19 131 160 189 138 109 168 3 3 3 3 3 3 56471 20777 22;620 20525 31861;31862;31863 41181;41182;41183 41183 3 YAAVHVHTNAAR Unmodified 1308.6687 0.66871688 1187 P49593;P49593-2 PPM1F Protein phosphatase 1F yes no 0 0 0 0 0 6.5 0.5 1 1 25.835 25.835 4 2.5914E-05 4600 TMT1-5 103.34 77.299 49.757 73.463 51.074 60.519 49.15 41.237 47 73 54 59 51 40 2 2 2 2 2 2 9649.7 20778 1187 20526 31864;31865 41184;41185 41184 2 YAAVTQFEATDAR Unmodified 1441.6838 0.68375782 1324 P55786;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 0 4 0 2 51.056 51.056 2;3 9.1234E-05 14651 TMT1-3 72.327 43.966 38.353 20.337 29.007 21.5 43.468 45.664 36 22 29 22 44 44 1 1 1 1 1 1 17790 20779 1324 20527 31866;31867 41186;41187 41187 2 YADALQEIIQER Unmodified 1447.7307 0.73070802 3063 Q9Y6N5 SQRDL Sulfide:quinone oxidoreductase, mitochondrial yes yes 0 0 0 0 0 4 0 2 69.015 69.015 2;3 4.7492E-05 21714 TMT1-3 110.64 102.33 53.776 96.156 77.62 65.102 70.01 67.292 51 95 80 65 72 65 2 2 2 2 2 2 26589 20780 3063 20528 31868;31869 41188;41189 41188 2 YADLPGIAR Unmodified 974.51853 0.5185304 1720 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 0 5 0 1 51.606 51.606 2 9.5658E-05 14630 TMT1-4 150.88 108.65 349.6 357.04 272.31 289.14 209.96 443.86 329 362 285 283 228 422 1 1 1 1 1 1 41485 20781 1720 20529 31870 41190 41190 1 YADLSHNR Unmodified 974.45699 0.45699277 1296 P54136-2;P54136 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 0 3 0 1 28.178 28.178 3 0.0055563 6581 TMT1-2 82.75 67.378 46.309 88.157 77.045 89.607 47.409 53.013 44 87 80 87 51 51 1 1 1 1 1 1 3515.2 20782 1296 20530 31871 41191 41191 1 YADLTEDQLPSCESLK Unmodified 1867.851 0.85095909 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 0 4 0 2 61.315 61.315 3;4 5.45E-12 18731 TMT1-3 125.22 100.3 469.67 587.43 454.42 394.75 526.32 441.23 443 589 471 395 535 428 3 3 3 3 3 3 116600 20783 782 20531 31872;31873 41192;41193;41194 41194 3 YADLTEDQLPSCESLKDTIAR Unmodified 2424.1479 0.14786939 782 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 1 5 0 2 62.985 62.985 3;4 2.0914E-05 19057 TMT1-4 71.299 55.177 223.98 259.46 187.91 167.5 203.67 241.5 211 261 196 167 210 232 2 2 2 2 2 2 131720 20784 782 20532 31874;31875 41195;41196 41195 2 YAEAVTR Unmodified 808.40792 0.40791731 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 3 0 1 31.94 31.94 2 0.0055444 8075 TMT1-2 134.06 33.302 1525.5 2009.2 1783.4 1389.2 1785.6 2219.6 1441 2013 1824 1399 1841 2130 2 2 2 2 2 2 380740 20785 397 20533 31876 41197;41198 41197 2 YAEDIFGELFTQANTFASR Unmodified 2179.0222 0.02219859 3064 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 0 0 7 0 2 91.912 91.912 2;3 1.5294E-22 29761 TMT1-6 131.35 109.79 14.857 11.465 18.005 15.907 27.025 14.153 14 12 18 16 27 14 2 2 2 2 2 2 29182 20786 3064 20534 31877;31878 41199;41200 41200 2 YAEEELEQVR Unmodified 1264.5935 0.59354583 1724 Q13586;Q13586-2 STIM1 Stromal interaction molecule 1 yes no 0 0 0 0 0 2 0 1 47.432 47.432 2 0.00013584 13872 TMT1-1 135.63 124.88 146.24 188.76 147.96 124.05 141.57 128.14 138 189 153 124 145 124 2 2 2 2 2 2 32574 20787 1724 20535 31879 41201;41202 41201 2 YAEERDR Unmodified 937.42536 0.42535829 1019;1020 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 1 1.5 0.5 1 1 19.476 19.476 3 0.0039224 3659 TMT 1-phospho 104.45 7.3801 95.57 99.622 83.62 66.733 80.521 124.56 90 101 86 67 84 119 3 3 3 3 3 3 9238.1 20788 1019;1020 20536 31880;31881 41203;41204;41205 41203 3 YAESGDAFDIQR Unmodified 1370.6103 0.61025853 876 P24557;P24557-2;P24557-3;P24557-4 TBXAS1 Thromboxane-A synthase yes no 0 0 0 0 0 2.5 0.5 1 1 49.714 49.714 2 1.7496E-08 15044 TMT1-2 143.24 125.18 137.48 181.31 183.69 207.39 188.21 212.09 130 182 189 203 196 204 3 3 3 3 3 3 37588 20789 876 20537 31882;31883 41206;41207;41208 41207 3 YAETFLEPWFK Unmodified 1429.6918 0.69180331 2778 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 yes yes 0 0 0 0 0 7 0 2 80.84 80.84 2;3 0.0071307 25651 TMT1-6 82.749 55.007 100.48 139.01 126.24 149.42 139.84 175.1 95 139 131 146 146 168 3 3 3 3 3 3 13417 20790 2778 20538 31884;31885 41209;41210;41211 41211 3 YAFGQETNVPLNNFSADQVTR Unmodified 2370.124 0.1240379 192 O43678 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 0 0 0 0 0 6 0 1 64.326 64.326 3 1.0818E-06 19826 TMT1-5 78.708 65.52 30.591 43.898 51.148 27.964 36.391 29.876 29 44 51 29 37 29 1 1 1 1 1 1 9194.1 20791 192 20539 31886 41212 41212 1 YAFPVSNNLPLFAFEYK Unmodified 2019.0142 0.014200086 1728 Q13614-2;Q13614 MTMR2 Myotubularin-related protein 2 yes no 0 0 0 0 0 9 0 1 86.367 86.367 3 0.0033746 26065 TMT1-8 50.387 30.548 54.247 33.788 51.307 35.341 50.454 36.936 51 36 51 36 51 36 1 1 1 1 1 1 3811.7 20792 1728 20540 31887 41213 41213 1 YAFSGVAFTGAK Unmodified 1217.6081 0.60807369 871 P23919-2;P23919 DTYMK Thymidylate kinase yes no 0 0 0 0 0 9 0 1 61.211 61.211 3 0.00018043 16184 TMT1-8 90.653 16.872 91.974 131.17 120.19 102.5 97.027 144.34 87 131 123 102 102 138 1 1 1 1 1 1 9978.9 20793 871 20541 31888 41214 41214 1 YAFVNWINK Unmodified 1153.592 0.59202969 690;691 P13796;P13797-3;P13797-2;P13797 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 0 6.33 3.77 1 2 69.594 69.594 2;3 4.7174E-16 19342 TMT1-8 197.65 143.49 1185.2 2132.2 1522.3 1293.8 1875.2 2146.7 1123 2103 1584 1299 1920 2064 4 4 4 4 4 4 573320 20794 690;691 20542 31889;31890;31891 41215;41216;41217;41218 41216 4 YAGGVAEYR Unmodified 984.46649 0.46649483 2832 Q9P2T1-2;Q9P2T1;Q9P2T1-3 GMPR2 GMP reductase 2 yes no 0 0 0 0 0 3 0 1 37.705 37.705 2 0.040112 10360 TMT1-2 69.954 55.28 69.094 72.207 48.218 51.255 85.803 82.832 65 73 51 51 87 80 1 1 1 1 1 1 11257 20795 2832 20543 31892 41219 41219 1 YAGLSTCFR Unmodified 1073.4964 0.49641475 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 7 0 1 49.105 49.105 2 1.2762E-08 13163 TMT1-6 168.08 118.75 115.65 144.87 96.491 103.22 133.88 166.74 109 145 102 102 138 160 1 1 1 1 1 1 20873 20796 1186 20544 31893 41220 41220 1 YAGSALQYEDVSTAVQNLQK Unmodified 2184.0699 0.069877064 2701 Q9NP79;Q9NP79-2 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 0 0 0 0 0 6 0 1 66.823 66.823 3 1.524E-24 20785 TMT1-5 114.4 98.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20797 2701 20545 31894 41221 41221 1 YAGSQVASTSEVLK Unmodified 1438.7304 0.73037367 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 5 0 1 49.442 49.442 2 7.7595E-27 13762 TMT1-4 183.79 130.1 99.539 130.81 111.55 125.99 95.947 144.37 94 131 116 123 102 138 1 1 1 1 1 1 22514 20798 471 20546 31895 41222 41222 1 YAHVVLR Unmodified 856.49192 0.49192172 1425 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 0 7 0.816 1 1 1 33.855 33.855 3 0.001859 7713 TMT1-5 111.69 60.115 130.7 282.23 156.61 145.74 181.34 250.67 124 276 167 145 188 240 3 3 3 3 3 3 29038 20799 1425 20547 31896;31897;31898 41223;41224;41225 41223 3 YAIAVNDLGTEYVHR Unmodified 1719.858 0.8580338 334 O94925;O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 0 5 0 1 54.971 54.971 3 5.8178E-20 15963 TMT1-4 128.15 109.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20800 334 20548 31899 41226 41226 1 YAIGSLNEGR Unmodified 1078.5407 0.5407224 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 44.98 44.98 2 0.00048689 12016 TMT1-4 115.82 69.012 77.081 132.56 97.396 103.85 97.221 136.87 73 131 102 102 102 131 1 1 1 1 1 1 11409 20801 1120 20549 31900 41227 41227 1 YAILTPETWPR Unmodified 1345.703 0.7030367 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 7 0 1 65.288 65.288 2 0.00085252 19560 TMT1-6 70.399 39.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20802 44 20550 31901 41228 41228 1 YAISMAR Unmodified 810.40581 0.40580882 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 7 0 1 42.258 42.258 2 0.026959 10412 TMT1-6 92.191 34.379 237.89 394.58 259.84 312.52 284.85 363.91 225 390 276 305 298 349 2 2 2 2 2 2 27038 20803 690 20551 31902 41229;41230 41229 2 YALIQHQK Unmodified 999.55016 0.55016488 1190 Q8NI51-11;P49711-2;Q8NI51-6;Q8NI51-5;Q8NI51-10;Q8NI51-2;Q8NI51-8;Q8NI51;Q8NI51-3;Q8NI51-7;P49711 CTCFL;CTCF Transcriptional repressor CTCFL;Transcriptional repressor CTCF yes no 0 0 0 0 0 8 0 1 37.934 37.934 3 0.003793 8778 TMT1-7 89.296 59.552 91.922 153.69 109.88 133.42 170.99 142.23 87 152 116 131 174 138 1 1 1 1 1 1 13767 20804 1190 20552 31903 41231 41231 1 YALPLVGHR Unmodified 1024.5818 0.58179936 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 8 0 1 46.214 46.214 3 9.8968E-05 12132 TMT1-7 135.77 97.528 99.31 200.32 91.143 150.44 139.04 166.59 94 196 102 145 145 160 1 1 1 1 1 1 39896 20805 686 20553 31904 41232 41232 1 YALSNSIGPVR Unmodified 1175.6299 0.62987176 704 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 0 7 0 1 49.436 49.436 2 7.02E-17 13297 TMT1-6 187.99 151.6 123.65 90.664 60.668 80.798 160.88 80.689 116 94 65 80 160 80 1 1 1 1 1 1 17357 20806 704 20554 31905 41233 41233 1 YALTGDEVK Unmodified 994.49713 0.49712625 1440 P62701;P22090;Q8TD47 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 0 4.5 0.5 1 1 47.626 47.626 2 0.0019888 13112 TMT1-4 108.74 54.585 392.78 432.73 344.36 265.04 449.65 502.05 370 437 355 269 458 483 2 2 2 2 2 2 36947 20807 1440 20555 31906;31907 41234;41235 41235 2 YALTGDEVKK Unmodified 1122.5921 0.59208927 1440 P62701;P22090;Q8TD47 RPS4X;RPS4Y1;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 1 6 0 1 43.827 43.827 3 0.0013617 11733 TMT1-5 93.258 51.857 559.98 768.83 631.88 552.95 676.5 1004.1 529 768 652 552 704 960 1 1 1 1 1 1 41406 20808 1440 20556 31908 41236 41236 1 YALTTTLSAR Unmodified 1095.5924 0.59242362 2676 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 0 8 0 1 49.349 49.349 2 0.00075737 13349 TMT1-7 80.787 57.231 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20809 2676 20557 31909 41237 41237 1 YALVWGTSTK Unmodified 1124.5866 0.58660996 1309 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 0 0 9 0 1 60.213 60.213 2 0.028396 15810 TMT1-8 61.65 18.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20810 1309 20558 31910 41238 41238 1 YALYDASFETK Unmodified 1306.6081 0.60813326 1364 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 0 5.33 0.471 2 1 60.41 60.41 2;3 4.9274E-08 18143 TMT1-5 152.07 133.44 821.07 1089.4 1021.8 713.87 938.86 1159.7 776 1092 1038 725 967 1113 5 5 5 5 5 5 185650 20811 1364 20559 31911;31912;31913 41239;41240;41241;41242;41243 41242 5 YALYDATYETK Unmodified 1336.6187 0.61869795 865 P23528;Q9Y281-3;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 0 4.5 1.71 1 1 2 2 55.365 55.365 2;3 1.5815E-17 16264 TMT1-5 191.48 149.94 8248.9 13537 10037 7716.6 10211 13477 7807 13403 10383 7783 10543 12916 11 11 11 11 11 11 1255400 20812 865 20560 31914;31915;31916;31917;31918;31919 41244;41245;41246;41247;41248;41249;41250;41251;41252;41253;41254 41253 11 YANTLLSVK Unmodified 1007.5651 0.56514624 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 8 0 1 56.6 56.6 2 0.00056491 16181 TMT1-7 134.25 50.982 268.9 326.3 336.38 261.43 317.73 388.55 254 329 341 263 328 373 2 2 2 2 2 2 41607 20813 1723 20561 31920 41255;41256 41255 2 YAPLHLVPLIER Unmodified 1419.8238 0.82382054 2079;2399 Q7L576;Q7L576-2;Q7L576-3;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 7.5 0.5 1 1 61.604 61.604 3 0.00017174 18117 TMT1-7 93.623 70.706 223.81 275.18 203.22 167.02 180.88 235.75 211 276 211 167 188 226 3 3 3 3 3 3 77270 20814 2079;2399 20562 31921;31922 41257;41258;41259 41258 3 YAPSCAK Unmodified 795.35852 0.35852428 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 6 0 1 34.328 34.328 2 0.029153 7918 TMT1-5 91.041 31.836 202.21 227.69 267.03 185.62 267.83 237.54 191 231 268 189 272 230 1 1 1 1 1 1 22306 20815 2718 20563 31923 41260 41260 1 YAPSEAGLHEMDIR Unmodified 1587.7351 0.73514147 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.17 2.48 1 2 1 1 1 47.001 47.001 3 2.3906E-46 10469 TMT1-8 192.18 130.97 1696.7 2305.2 1966.9 1613.4 2070.2 2556.9 1603 2305 2020 1619 2134 2454 8 8 8 8 8 8 969340 20816 831 20564 31924;31925;31926;31927;31928;31929 41261;41262;41263;41264;41265;41266;41267;41268;41269;41270 41270 10 YAPSEAGLHEMDIR Oxidation (M) 1603.7301 0.73005609 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 1 0 0 2.75 0.433 1 3 42.179 42.179 3 5.3081E-10 11239 TMT1-2 122.63 78.19 284.02 493.04 357.47 266.12 292.47 447.9 269 487 370 268 306 428 5 5 5 5 5 5 107470 20817 831 20564 31930;31931;31932;31933 41271;41272;41273;41274;41275;41276 41273 162 6 YAPSGFYIASGDVSGK Unmodified 1617.7675 0.76748745 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 7 1.1 2 2 1 61.259 61.259 3;4 1.2099E-18 18594 TMT1-5 151.41 111.39 1767.6 2164.4 1895.9 1712 1875.7 2364.2 1668 2176 1951 1702 1946 2268 6 6 6 6 6 6 486350 20818 250 20565 31934;31935;31936;31937;31938 41277;41278;41279;41280;41281;41282;41283 41278 7 YAPTEAQLNAVDALIDSMSLAK Unmodified 2320.1621 0.16206289 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 7.5 0.5 2 2 93.077 93.077 3;4 8.4662E-29 30185 TMT1-6 132.01 115.71 84.833 108.62 98.053 144.75 128.8 128.08 80 109 103 140 132 123 4 5 5 5 4 4 23410 20819 676 20566 31939;31940;31941;31942 41284;41285;41286;41287;41288 41286 5 YAQDEHLITFFVPVFEPLPPQYFIR Unmodified 3065.5691 0.56911599 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 8 0 1 93.112 93.112 4 0.00046591 30225 TMT1-7 50.271 37.837 15.936 14.647 14.249 22.936 13.845 23.057 15 15 15 22 15 22 1 1 1 1 1 1 1969.9 20820 293 20567 31943 41289 41289 1 YASENVNK Unmodified 923.43486 0.43486035 1444;2616 P62820;P62820-2;Q9H0U4 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 0 0 3.33 1.7 1 1 1 34.754 34.754 2;3 0.00097466 8169 TMT1-3 146.27 79.234 685.16 829.58 820.79 831.23 972.86 652.35 647 836 842 822 988 638 4 4 4 4 4 4 109460 20821 1444;2616 20568 31944;31945;31946 41290;41291;41292;41293 41291 4 YASFQVENDQER Unmodified 1484.6532 0.65318598 1293 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 0 3 0 1 45.147 45.147 3 1.1326E-05 13337 TMT1-2 109.16 95.957 77.323 109.49 76.315 73.779 77.694 75.601 73 109 80 73 80 73 1 1 1 1 1 1 11425 20822 1293 20569 31947 41294 41294 1 YASICQQNGIVPIVEPEILPDGDHDLK Unmodified 3019.4961 0.49608698 459;609 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 0 4 0 1 72.11 72.11 4 8.2356E-06 22990 TMT1-3 62.1 50.577 23.218 44.795 27.264 29.399 35.791 14.969 22 44 29 29 36 15 1 1 1 1 1 1 3785.4 20823 459;609 20570 31948 41295 41295 1 YASICQQNGIVPIVEPEILPDGDHDLKR Unmodified 3175.5972 0.59719801 459;609 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 1 4.5 0.5 1 1 67.89 67.89 5 5.0331E-06 20347 TMT1-4 61.709 50.705 99.225 137.49 158.53 106.72 157.56 142.61 94 138 159 109 160 138 2 2 2 2 2 2 17972 20824 459;609 20571 31949;31950 41296;41297 41297 2 YATALYSAASK Unmodified 1144.5764 0.57643921 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 7.5 0.5 2 2 52.176 52.176 2;3 1.1853E-11 14467 TMT1-7 172.27 122.56 362.33 431.5 413.01 356.43 428.83 529.29 342 435 422 356 443 508 4 4 4 4 4 4 111730 20825 1148 20572 31951;31952;31953;31954 41298;41299;41300;41301 41300 4 YATSVSER Unmodified 911.43486 0.43486035 2052 Q6WKZ4-3;Q6WKZ4;Q6WKZ4-5 RAB11FIP1 Rab11 family-interacting protein 1 yes no 0 0 0 0 0 5 0 1 32.416 32.416 2 0.010313 7025 TMT1-4 99.375 39.081 207.48 290.75 228.38 214.57 245.89 228.57 196 290 237 213 252 221 1 1 1 1 1 1 38539 20826 2052 20573 31955 41302 41302 1 YAVDDVQYVDEIASVLTSQKPSVLLTLR Unmodified 3121.6547 0.65469611 674 P12955;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 1 7.5 0.5 1 1 95.118 95.118 4 1.7067E-11 31041 TMT1-7 80.664 78.918 38.002 66.849 48.631 52.729 64.261 68.522 36 66 51 52 66 66 3 3 3 3 3 3 8525.3 20827 674 20574 31956;31957 41303;41304;41305 41305 3 YAVIGTYDGR Unmodified 1113.5455 0.54547343 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 0 5 0 1 48.665 48.665 2 0.001123 13466 TMT1-4 103.56 67.168 145.64 217.3 225.13 126.29 184.9 203.66 138 217 226 131 189 196 1 1 1 1 1 1 21497 20828 1960 20575 31958 41306 41306 1 YAVLYQPLFDK Unmodified 1355.7125 0.71253876 1315;1316 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 no no 0 0 0 0 0 8.33 0.471 2 1 72.247 72.247 2;3 1.8594E-11 22348 TMT1-7 167.93 156.78 222.07 315.48 281.23 232.03 312.34 310.89 210 315 288 233 319 300 3 3 3 3 3 3 107770 20829 1315;1316 20576 31959;31960;31961 41307;41308;41309 41307 3 YAVLYQPLFDKR Unmodified 1511.8136 0.81364979 1315 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 1 9 0 1 63.05 63.05 3 4.5038E-05 16919 TMT1-8 102.4 68.51 219.67 695.38 542.82 454.94 184.38 753.73 211 676 560 449 221 712 1 1 1 1 1 1 63199 20830 1315 20577 31962 41310 41310 1 YAVTTGDHGIIR Unmodified 1301.6728 0.67279921 1287 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 0 8 0 1 39.678 39.678 3 0.00030508 9494 TMT1-7 89.356 84.391 160.71 266.05 175.95 167.2 257.61 194.12 152 263 185 167 260 189 1 1 1 1 1 1 8694.9 20831 1287 20578 31963 41311 41311 1 YAVWFGGSMLASTPEFYQVCHTK Unmodified 2678.2298 0.2297653 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 9 0 1 75.5 75.5 4 8.9539E-26 21796 TMT1-8 116.39 68.16 92.04 146.47 96.179 110.74 141.67 143.07 87 145 102 109 145 138 2 2 2 2 2 2 33259 20832 1379 20579 31964 41312;41313 41312 2 YAWQGVALLPFVDER Unmodified 1762.9043 0.90425571 2611 Q9H0D6-2;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 0 8 0 1 83.298 83.298 3 0.0023159 26589 TMT1-7 63.682 46.43 7.2386 37.583 13.939 0 29.558 22.609 7 36 15 0 29 22 1 1 1 0 1 1 6356.2 20833 2611 20580 31965 41314 41314 1 YAYYDTER Unmodified 1079.456 0.45598972 60 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 0 3 0 1 39.308 39.308 2 0.00078967 11012 TMT1-2 148.04 124.97 53.786 103.74 69.588 65.158 92.493 82.641 51 102 73 65 94 80 1 1 1 1 1 1 12719 20834 60 20581 31966 41315 41315 1 YCALNNK Unmodified 881.40654 0.40653711 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 7 0 1 39.39 39.39 2 0.0079517 9332 TMT1-6 121.68 95.79 107.77 168.09 139.39 154.24 190.94 203.49 102 167 145 152 196 196 1 1 1 1 1 1 14099 20835 2753 20582 31967 41316 41316 1 YCAQDAFFQVK Unmodified 1375.6231 0.62307182 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 7 0 1 61.535 61.535 3 0.00025871 18036 TMT1-6 98.737 88.103 130.28 169.74 140.93 114.86 187.53 172.67 123 170 145 116 190 167 1 1 1 1 1 1 61253 20836 1663 20583 31968 41317 41317 1 YCDHENAAFK Unmodified 1253.5135 0.51352137 1963;2225 Q5JTV8;Q5JTV8-3;Q5JTV8-2;Q8NFQ8 TOR1AIP1;TOR1AIP2 Torsin-1A-interacting protein 1;Torsin-1A-interacting protein 2 no no 0 0 0 0 0 4 0 1 36.637 36.637 3 0.00012857 9022 TMT1-3 110.53 88.336 154.02 141.51 142.85 107.24 179.78 134.52 145 145 145 109 181 131 1 1 1 1 1 1 14356 20837 1963;2225 20584 31969 41318 41318 1 YCDPDSYHR Unmodified 1211.4666 0.46657118 896 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 0 3 0 1 30.833 30.833 3 0.0012653 7680 TMT1-2 94.85 83.119 84.503 131.8 113 93.731 121.03 96.75 80 131 116 94 123 94 1 1 1 1 1 1 8528.9 20838 896 20585 31970 41319 41319 1 YCECDDFSCVR Unmodified 1509.5323 0.53228426 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 0 2.2 0.748 1 2 2 45.668 45.668 2;3 1.601E-42 13329 TMT1-1 227.99 216.26 498.68 705.54 527.93 501.11 624.26 645.24 471 703 550 498 640 622 6 6 6 6 6 6 442080 20839 484 20586 31971;31972;31973;31974;31975 41320;41321;41322;41323;41324;41325 41322 6 YCFEIVPK Unmodified 1054.5158 0.5157532 1658 Q12913;Q12913-2 PTPRJ Receptor-type tyrosine-protein phosphatase eta yes no 0 0 0 0 0 7 0 1 61.447 61.447 2 0.010962 18100 TMT1-6 98.523 42.112 214.99 235.19 275.52 177.71 255.02 285.87 203 239 276 182 261 275 2 2 2 2 2 2 26686 20840 1658 20587 31976 41326;41327 41327 2 YCFGVEDTLK Unmodified 1230.5591 0.55907458 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 5.5 0.5 1 1 59.451 59.451 2;3 8.0568E-05 17875 TMT1-5 141.48 124.85 92.293 100.76 92.356 63.789 93.105 66.633 87 102 94 65 94 65 1 1 1 1 1 1 7184.9 20841 1439 20588 31977;31978 41328;41329 41329 2 YCFPNYVGR Unmodified 1174.523 0.52296385 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 0 7 0 1 52.632 52.632 2 0.0035385 14567 TMT1-6 101.41 73.238 115.82 98.915 107.89 79.129 99.97 89.889 109 102 109 80 102 87 1 1 1 1 1 1 8545.6 20842 1381;1087 20589 31979 41330 41330 1 YCFPNYVGRPK Unmodified 1399.6707 0.67069072 1381;1087 P61163;P42025 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin no no 0 0 0 0 1 9 0 1 48.34 48.34 3 0.00011023 11090 TMT1-8 96.171 73.254 184.58 231.71 160.8 113.54 194.94 141.55 174 232 167 116 196 138 1 1 1 1 1 1 17090 20843 1381;1087 20590 31980 41331 41331 1 YCFSEMAPVCAVVGGILAQEIVK Unmodified 2540.2477 0.24772355 2837 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 94.75 94.75 3 3.3743E-06 30859 TMT1-7 67.864 59.363 0 15.96 0 7.3668 15.11 7.0308 0 15 0 7 15 7 0 1 0 1 1 1 1716.1 20844 2837 20591 31981 41332 41332 1 YCGDYDSFFESK Unmodified 1516.5817 0.58166052 2885 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 0 0 5 0 1 64.005 64.005 3 0.00016865 19490 TMT1-4 93.839 75.243 393.82 492.09 480.46 384.38 530.09 497.62 372 495 489 387 540 481 2 2 2 2 2 2 65046 20845 2885 20592 31982 41333;41334 41333 2 YCIGLNETQLGIIAPFWLK Unmodified 2235.1762 0.17619681 1088 P42126 ECI1 Enoyl-CoA delta isomerase 1, mitochondrial yes yes 0 0 0 0 0 9 0 2 92.213 92.213 3;4 1.4026E-15 28255 TMT1-8 112.34 84.041 37.948 58.064 65.132 58.466 55.621 68.769 36 58 66 58 58 66 2 2 2 2 2 2 9402 20846 1088 20593 31983;31984 41335;41336 41336 2 YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY Unmodified 3992.6305 0.63054414 2463 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 0 3 0 1 72.206 72.206 4 0.017613 24025 TMT1-2 26.976 25.468 30.681 44.147 35.896 29.963 36.556 22.409 29 44 37 30 37 22 2 2 2 2 2 2 32282 20847 2463 20594 31985 41337;41338 41338 2 YCRDEIESVK Unmodified 1297.5973 0.597251 484 P05106;P05106-2;P05106-3 ITGB3 Integrin beta-3 yes no 0 0 0 0 1 3.71 1.67 1 2 3 1 39.773 39.773 2;3;4 2.5369E-05 10121 TMT1-3 158.79 132.19 9637.8 13101 12865 9389.2 11399 15068 9115 13126 13048 9488 11805 14440 11 11 11 11 11 11 1592700 20848 484 20595 31986;31987;31988;31989;31990;31991;31992 41339;41340;41341;41342;41343;41344;41345;41346;41347;41348;41349 41348 11 YCTFNDDIQGTAAVALAGLLAAQK Unmodified 2510.2475 0.24752385 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 8.5 0.5 2 2 91.687 91.687 3;4 3.2031E-31 27953 TMT1-8 123.99 106.37 226.94 255.29 234.42 197.56 317.86 318.19 214 258 240 199 323 307 5 5 5 5 5 5 24588 20849 859 20596 31993;31994;31995;31996 41350;41351;41352;41353;41354 41353 5 YDAAQLR Unmodified 835.41882 0.41881635 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 37.255 37.255 2 0.0014051 10219 TMT1-2 107.32 35.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20850 471 20597 31997 41355 41355 1 YDAIFDSLSPVNGFLSGDK Unmodified 2043.9789 0.97893679 1098 P42566 EPS15 Epidermal growth factor receptor substrate 15 yes yes 0 0 0 0 0 6 0 1 90.395 90.395 3 1.2633E-09 29795 TMT1-5 94.203 69.665 15.832 37.021 12.903 23.026 13.327 37.996 15 36 15 22 15 36 1 1 1 1 1 1 1892.8 20851 1098 20598 31998 41356 41356 1 YDCGEEILITVLSAMTEEAAVAIK Unmodified 2625.2918 0.29175643 1477 P63241;P63241-2;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 0 0 0 0 0 7 0 1 118.77 118.77 4 6.8273E-07 34629 TMT1-6 73.672 59.657 4.2267 6.0006 5.8886 4.986 6.8068 8.3338 4 6 6 5 7 8 2 2 2 2 2 2 1378.8 20852 1477 20599 31999 41357;41358 41358 2 YDDAIQLYDR Unmodified 1270.583 0.58298115 1809 Q15006 EMC2 ER membrane protein complex subunit 2 yes yes 0 0 0 0 0 3 0 1 54.849 54.849 2 0.0012192 17171 TMT1-2 103.26 76.741 61.385 94.834 62.401 43.313 56.354 67.682 58 94 65 44 58 65 1 1 1 1 1 1 8243.6 20853 1809 20600 32000 41359 41359 1 YDDEVKR Unmodified 923.43486 0.43486035 281 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 1 3 0 1 31.663 31.663 3 0.025933 7960 TMT1-2 72.547 19.377 243.64 447.26 331.44 285.3 342.77 480.58 231 441 344 285 356 460 1 1 1 1 1 1 22171 20854 281 20601 32001 41360 41360 1 YDDMAAAMK Unmodified 1014.4151 0.41505288 1411;984 P31946;P31946-2;P61981 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 0 0 0 0 0 5 0 1 51.697 51.697 2 0.00034054 14668 TMT1-4 140.5 123.18 218.33 582.12 322.2 265.28 390.88 690.27 208 566 342 267 408 658 1 1 1 1 1 1 42138 20855 984;1411 20602 32002 41361 41361 1 YDDMAACMK Unmodified 1103.4086 0.4085873 1471 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 0 4.67 0.471 1 2 49.493 49.493 2;3 0.0011275 14072 TMT1-3 123.92 107.69 511.38 911.56 563.92 434.51 680.52 893.08 484 898 592 440 699 856 3 3 3 3 3 3 125070 20856 1471 20603 32003;32004;32005 41362;41363;41364 41362 3 YDDMATCMK Unmodified 1133.4192 0.41915198 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 4 0 1 48.423 48.423 2 0.0075291 13655 TMT1-3 63.216 46.642 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20857 909 20604 32006 41365 41365 1 YDDPEVQK Unmodified 992.44509 0.44509068 1058 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 0 2.5 0.5 1 1 40.986 40.986 2;3 0.0093305 11619 TMT1-2 75.109 55.838 91.751 160.77 132.66 146.99 191.04 180.03 87 159 138 145 195 174 2 2 2 2 2 2 15567 20858 1058 20605 32007;32008 41366;41367 41367 2 YDDPPDWQEILTYFR Unmodified 1956.8894 0.8893935 1383 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 0 6 0 1 89.971 89.971 3 1.057E-05 29603 TMT1-5 93.478 87.497 7.3027 15.096 22.208 14.661 21.811 15.368 7 15 22 15 22 15 1 1 1 1 1 1 4452.4 20859 1383 20606 32009 41368 41368 1 YDDVTEK Unmodified 868.38143 0.38142779 1244 P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 0 2 0 1 40.576 40.576 2 0.0078305 11190 TMT1-1 77.058 14.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20860 1244 20607 32010 41369 41369 1 YDEAASYIQSK Unmodified 1273.5826 0.5826468 480 P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 0 5 0 1 53.409 53.409 3 1.1942E-05 15303 TMT1-4 115.18 89.516 245.76 333.54 251.52 216.31 370.75 245.26 232 333 261 218 372 240 2 2 2 2 2 2 61724 20861 480 20608 32011 41370;41371 41370 2 YDEEFQR Unmodified 985.41412 0.4141249 1310 P55060-3;P55060 CSE1L Exportin-2 yes no 0 0 0 0 0 2 0 1 39.121 39.121 2 0.003864 10613 TMT1-1 85.265 53.505 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20862 1310 20609 32012 41372 41372 1 YDEFHDYLER Unmodified 1385.5888 0.58879481 2430 Q96K76-4;Q96K76;Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes no 0 0 0 0 0 3 0 1 51.729 51.729 3 0.00051027 15910 TMT1-2 98.737 75.859 85.007 61.966 87.456 56.838 71.437 67.252 80 65 87 58 73 65 1 1 1 1 1 1 13029 20863 2430 20610 32013 41373 41373 1 YDELYAALTALLAAGSQLDTVR Unmodified 2353.2165 0.2165413 1977 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 0 9 0 1 112.47 112.47 3 2.7858E-14 34755 TMT1-8 89.663 73.489 0 7.3831 3.885 0 4.0415 4.1487 0 7 4 0 4 4 0 1 1 0 1 1 1552.6 20864 1977 20611 32014 41374 41374 1 YDEMVESMK Unmodified 1130.4624 0.46239701 1422 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 0 0 0 4 0 1 56.622 56.622 2 0.0018916 16878 TMT1-3 110.87 68.051 107.97 121.17 144.99 91.715 126.82 174.4 102 123 145 94 131 167 1 1 1 1 1 1 13453 20865 1422 20612 32015 41375 41375 1 YDEPLGK Unmodified 820.39668 0.39668393 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 4 0 1 44.583 44.583 2 0.013441 12115 TMT1-3 102.72 62.616 179.13 547.56 447.14 377.77 290.2 638.78 172 533 460 375 315 607 1 1 1 1 1 1 55355 20866 2461 20613 32016 41376 41376 1 YDEYVNVK Unmodified 1028.4815 0.48147619 2267 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 4 0 1 49.735 49.735 3 0.011095 14155 TMT1-3 72.547 42.563 53.963 56.743 79.587 74.007 55.199 60.253 51 58 80 73 58 58 1 1 1 1 1 1 20436 20867 2267 20614 32017 41377 41377 1 YDFGIYDDDPEIITLER Unmodified 2072.9579 0.957867 2144 Q8IXB1;Q8IXB1-2;Q8IXB1-3 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 0 0 3 0 1 77.754 77.754 3 0.019112 26035 TMT1-2 43.454 42.85 7.3145 22.684 13.803 23.11 6.01 7.2905 7 22 15 22 7 7 1 1 1 1 1 1 2124.7 20868 2144 20615 32018 41378 41378 1 YDGIILPGK Unmodified 974.54368 0.54368251 1459 P62913-2;P62913 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 0 7 0 1 60.605 60.605 2 0.0099864 17660 TMT1-6 88.948 42.819 245.24 389.29 292.08 275.04 432.09 482.29 232 386 304 275 441 464 2 2 2 2 2 2 66379 20869 1459 20616 32019 41379;41380 41379 2 YDGKWEVEEMK Unmodified 1412.6282 0.62821678 920 P27824-2;P27824 CANX Calnexin yes no 0 0 0 0 1 5 0 1 53.6 53.6 3 0.0027044 15419 TMT1-4 81.431 58.196 273.6 403.96 381.81 229.63 295.75 492.58 259 403 386 236 309 470 1 1 1 1 1 1 31460 20870 920 20617 32020 41381 41381 1 YDGLVGMFDPK Unmodified 1240.5798 0.57981002 664 P12081-4;P12081;P12081-3;P12081-2;P49590-2;P49590 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 71.624 71.624 3 0.0006169 22037 TMT1-6 90.685 62.824 61.273 79.415 94.132 56.17 85.818 106.28 58 80 94 58 88 102 2 2 2 2 2 2 9834.2 20871 664 20618 32021;32022 41382;41383 41383 2 YDGNVYENLFEWAK Unmodified 1746.789 0.78895118 1824 Q15067-3;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 0 0 0 0 6 0 1 80.686 80.686 2 0.00014833 26223 TMT1-5 73.927 56.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20872 1824 20619 32023 41384 41384 1 YDGQIAVFGAGFQEK Unmodified 1628.7835 0.78347187 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 6 0 1 67.08 67.08 3 1.39E-10 20882 TMT1-5 119.96 99.523 99.173 176.2 134.46 84.848 118.51 182.1 94 174 138 87 123 174 1 1 1 1 1 1 25691 20873 1081 20620 32024 41385 41385 1 YDGQVAVFGSDLQEK Unmodified 1654.7839 0.7838658 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 4.5 0.5 1 1 62.113 62.113 3 1.2009E-10 18684 TMT1-4 121.27 74.674 298.91 504.58 371.21 353.39 374.28 294.2 283 499 387 350 383 286 3 3 3 3 3 3 109040 20874 845 20621 32025;32026 41386;41387;41388 41388 3 YDGSTIVPGEQGAEYQHFIQQCTDDVR Unmodified 3112.3832 0.38324207 1747 Q14019 COTL1 Coactosin-like protein yes yes 0 0 0 0 0 2.67 1.25 1 1 1 61.988 61.988 3;4 9.8681E-37 18958 TMT1-3 139.36 137.19 239.55 336.76 210.83 227.28 381.51 313.18 226 335 224 226 385 304 6 6 6 6 6 6 183140 20875 1747 20622 32027;32028;32029 41389;41390;41391;41392;41393;41394 41394 6 YDIEDGEAIDSR Unmodified 1381.5998 0.59975342 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 2 0 1 48.682 48.682 2 2.2569E-18 14368 TMT1-1 184.27 120.87 68.991 94.587 46.505 59.587 55.056 83.709 65 94 51 58 58 80 1 1 1 1 1 1 19833 20876 1723 20623 32030 41395 41395 1 YDKDDEAPSDGAQFPPIAAQDLPFVLK Unmodified 2946.4287 0.42871892 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 1 6 0 1 78.402 78.402 4 3.1698E-05 25363 TMT1-5 55.061 52.951 84.802 77.586 108.64 94.548 91.382 106.12 80 80 109 94 95 102 2 2 2 2 2 2 9255.4 20877 289 20624 32031 41396;41397 41396 2 YDLDFKSPDDPSR Unmodified 1553.6998 0.69980182 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 4.5 0.5 1 1 52.143 52.143 3 0.00054013 14838 TMT1-4 84.468 53.079 292.6 759.38 493.78 489.92 397.5 714.6 279 740 520 482 425 681 2 2 2 2 2 2 91579 20878 514 20625 32032;32033 41398;41399 41399 2 YDLDGLEK Unmodified 951.45493 0.45492709 2779 Q9NXH8 TOR4A Torsin-4A yes yes 0 0 0 0 0 4 0 1 55.283 55.283 2 0.011795 16350 TMT1-3 97.431 24.171 231.92 257.09 297.62 160.26 298.84 251.58 219 261 297 168 301 244 1 1 1 1 1 1 24452 20879 2779 20626 32034 41400 41400 1 YDLQNLKPYTK Unmodified 1381.7242 0.72416608 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 1 8 0 2 54.584 54.584 3;4 5.5802E-05 15401 TMT1-7 110.29 56.327 532.42 797.59 550.27 430.49 705.18 759.12 503 792 573 436 718 731 2 2 2 2 2 2 63656 20880 570 20627 32035;32036 41401;41402 41401 2 YDNFAHR Unmodified 921.40931 0.4093143 2855 Q9UFN0;Q9BS92 NIPSNAP3A;NIPSNAP3B Protein NipSnap homolog 3A;Protein NipSnap homolog 3B yes no 0 0 0 0 0 4 0 1 30.989 30.989 3 0.0041566 6729 TMT1-3 96.492 62.976 61.236 71.755 106.95 143.09 72.932 121.57 58 73 109 138 80 116 1 1 1 1 1 1 6071.1 20881 2855 20628 32037 41403 41403 1 YDPGALVIPFSGALELK Unmodified 1788.9662 0.96618726 2745 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 0 8 0 1 86.642 86.642 3 1.8343E-05 27791 TMT1-7 79.805 61.667 15.753 45.436 18.984 45.218 34.551 29.928 15 44 22 43 36 29 1 1 1 1 1 1 5313.1 20882 2745 20629 32038 41404 41404 1 YDPSLKPLSVSYDQATSLR Unmodified 2139.0848 0.084798847 406 P00918 CA2 Carbonic anhydrase 2 yes yes 0 0 0 0 1 7 0 1 60.355 60.355 3 3.4287E-18 17587 TMT1-6 128.66 104.98 541.71 612.06 409.04 497.81 537.13 476.1 510 616 435 487 551 461 2 2 2 2 2 2 146950 20883 406 20630 32039 41405;41406 41405 2 YDPTIEDFYR Unmodified 1317.5877 0.58773217 1385 P61225 RAP2B Ras-related protein Rap-2b no no 0 0 0 0 0 3.33 0.471 2 1 61.183 61.183 2;3 0.0008354 18589 TMT1-3 105.36 57.535 200.1 261.41 231.4 235.87 266.15 340.99 189 262 239 233 276 327 4 4 4 4 4 4 55084 20884 1385 20631 32040;32041;32042 41407;41408;41409;41410 41409 4 YDPTIEDSYR Unmodified 1257.5513 0.55134667 1384;1447 P61224;P61224-3;A6NIZ1;P61224-2;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A no no 0 0 0 0 0 2.17 0.687 1 3 2 46.164 46.164 2 4.9458E-29 13942 TMT1-2 213.53 157.63 2376 2918 3053.8 2495 3475.1 3172.4 2245 2941 3098 2509 3536 3069 8 8 8 8 8 8 807950 20885 1384;1447 20632 32043;32044;32045;32046;32047;32048 41411;41412;41413;41414;41415;41416;41417;41418;41419 41419 9 YDPTIEDSYRK Unmodified 1385.6463 0.64630969 1384;1447 P61224;P61224-3;P61224-2;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A no no 0 0 0 0 1 4.25 0.433 3 1 43.466 43.466 3;4 8.0949E-07 11770 TMT1-3 130.56 105.71 3024.9 4166.1 3486.8 2850.9 3401.7 4194.6 2858 4162 3585 2857 3515 4026 6 6 6 6 6 6 688320 20886 1384;1447 20633 32049;32050;32051;32052 41420;41421;41422;41423;41424;41425 41421 6 YDQATDTILTVTENIFSSMGDAGEMVR Oxidation (M) 2979.3478 0.34776776 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 0 5.8 0.748 2 2 1 96.988 96.988 3;4 1.696E-06 30862 TMT1-6 53.335 45.623 21.244 42.074 7.0348 12.631 26.297 35.494 20 41 7 12 26 34 2 3 1 2 2 3 11337 20887 3010 20634 32053;32054;32055;32056;32057 41426;41427;41428;41429;41430 41430 346;347 5 YDQATDTILTVTENIFSSMGDAGEMVR Unmodified 2963.3529 0.35285314 3010 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 0 7 1.29 1 1 2 1 1 106.9 106.9 3;4 3.6899E-36 34230 TMT1-5 131.75 112.21 51.966 57.302 54.172 36.774 39.646 75.621 49 58 55 37 42 72 9 9 9 8 9 9 38213 20888 3010 20634 32058;32059;32060;32061;32062;32063 41431;41432;41433;41434;41435;41436;41437;41438;41439 41433 9 YDQDLCYTDILFTEQER Unmodified 2207.9681 0.96811411 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 3 0 1 73.759 73.759 3 0.000444 24592 TMT1-2 67.43 58.015 0 15.855 6.2986 7.2756 0 15.99 0 15 7 7 0 15 0 1 1 1 0 1 2245.9 20889 1816 20635 32064 41440 41440 1 YDQNYDIR Unmodified 1085.4778 0.47778779 51 O00203-3;O00203;Q13367;Q13367-4;Q13367-3 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 0 0 0 0 0 3 0 1 40.637 40.637 2 0.0079201 11478 TMT1-2 102.51 39.33 91.402 223.48 138.2 108.11 148.31 166.33 87 218 145 109 152 160 1 1 1 1 1 1 231350 20890 51 20636 32065 41441 41441 1 YDSDRTELGFTNYIR Unmodified 1848.8642 0.86424139 1780 Q14554 PDIA5 Protein disulfide-isomerase A5 yes yes 0 0 0 0 1 4 0 1 55.724 55.724 3 1.9289E-07 16526 TMT1-3 107.73 103.7 68.809 102.71 70.251 49.956 85.056 106.3 65 102 73 51 87 102 1 1 1 1 1 1 10680 20891 1780 20637 32066 41442 41442 1 YDVCSCSDGR Unmodified 1217.4441 0.44412118 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 3 0 1 34.229 34.229 2 0.00013778 9020 TMT1-2 135.43 115.59 68.734 78.76 103.19 47.272 123.42 89.22 65 80 102 51 123 87 1 1 1 1 1 1 8862.8 20892 471 20638 32067 41443 41443 1 YDVYLINPQGK Unmodified 1308.6714 0.67140222 1247 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 0 0 7 0 1 61.646 61.646 3 0.0029934 18088 TMT1-6 74.944 50.153 53.912 87.899 61.836 66.187 62.338 76.039 51 87 65 65 65 73 1 1 1 1 1 1 11040 20893 1247 20639 32068 41444 41444 1 YDYNSGEELESYK Unmodified 1595.6627 0.66274761 3000 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 0 3 0 1 54.124 54.124 3 0.0024647 16860 TMT1-2 67.136 58.752 107.94 168.57 109.93 110.61 104.79 120.67 102 167 116 109 109 116 1 1 1 1 1 1 19581 20894 3000 20640 32069 41445 41445 1 YDYYYNTDSK Unmodified 1330.5354 0.53536225 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 4 0 1 48.776 48.776 3 0.012989 13773 TMT1-3 61.435 35.998 99.55 145.95 96.874 94.989 105.25 128.11 94 145 102 94 109 123 1 1 1 1 1 1 10840 20895 1723 20641 32070 41446 41446 1 YEAAGTLVTLSSAPTAIK Unmodified 1791.9618 0.96183016 1286 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 0 7 0 1 66.541 66.541 4 0.00012864 20089 TMT1-6 70.235 50.657 61.316 79.534 86.846 49.538 54.712 107.17 58 80 87 51 58 102 1 1 1 1 1 1 8834.1 20896 1286 20642 32071 41447 41447 1 YEAANWK Unmodified 880.40792 0.40791731 1361 P60900;P60900-2;P60900-3 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 0 6 0 1 46.02 46.02 2 0.0073117 12569 TMT1-5 129.4 80.039 299.5 522.42 255.86 319.79 375.62 422.08 283 514 280 313 387 406 1 1 1 1 1 1 43536 20897 1361 20643 32072 41448 41448 1 YEAEAAFFANLK Unmodified 1372.6663 0.66631685 1742 Q13976-2;Q13976;Q13976-3 PRKG1 cGMP-dependent protein kinase 1 yes no 0 0 0 0 0 6 0 1 72.171 72.171 3 0.00010419 22849 TMT1-5 98.353 78.776 38.198 43.652 35.211 20.858 57.899 52.714 36 44 36 22 58 51 1 1 1 1 1 1 5301.5 20898 1742 20644 32073 41449 41449 1 YEAHSDK Unmodified 848.36645 0.36644643 2923 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 0 0 3 0 1 24.937 24.937 3 0.033947 5368 TMT1-2 57.281 29.063 69.314 25.33 51.001 51.907 42.363 37.167 65 29 51 51 44 36 1 1 1 1 1 1 2167.8 20899 2923 20645 32074 41450 41450 1 YEAIVEENKK Unmodified 1221.6241 0.62411768 2460 Q99417 MYCBP C-Myc-binding protein yes yes 0 0 0 0 1 5 0 1 45.223 45.223 3 0.0059906 12092 TMT1-4 76.332 51.115 122.61 174.12 164.56 162.32 146.11 157.86 116 174 169 160 152 152 1 1 1 1 1 1 10142 20900 2460 20646 32075 41451 41451 1 YEASILTHDSSIR Unmodified 1490.7365 0.73652168 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 4.67 2.13 1 2 1 1 1 45.469 45.469 2;3 2.1714E-73 12339 TMT1-3 245.18 232.8 2008.2 2864.3 2336.8 1848.6 2691.3 3164.9 1898 2856 2404 1865 2758 3041 7 7 7 7 7 7 1212300 20901 439 20647 32076;32077;32078;32079;32080;32081 41452;41453;41454;41455;41456;41457;41458;41459 41453 8 YEATSVQQK Unmodified 1052.5138 0.51383895 1963 Q5JTV8;Q5JTV8-3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 0 4 0 1 36.564 36.564 2 0.00066562 8977 TMT1-3 131.44 67.96 30.764 28.188 35.489 36.29 50.117 45.474 29 29 36 36 51 44 1 1 1 1 1 1 4654 20902 1963 20648 32082 41460 41460 1 YEDFSNLGTTHLLR Unmodified 1664.8158 0.81583463 851 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 0 6 0 1 57.181 57.181 3 0.00049548 17051 TMT1-5 76.358 62.452 334.68 393.09 403.78 448.38 334.25 632.19 316 397 415 438 360 602 2 2 2 2 2 2 21848 20903 851 20649 32083 41461;41462 41462 2 YEDLAPCITLK Unmodified 1321.6588 0.65878863 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 6 0 1 64.868 64.868 3 0.00013252 20012 TMT1-5 74.611 52.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20904 934 20650 32084 41463 41463 1 YEDLSHLAESK Unmodified 1290.6092 0.6091959 1138 P46939;P46939-2 UTRN Utrophin yes no 0 0 0 0 0 4 0 1 51.892 51.892 3 0.00055973 15022 TMT1-3 65.395 40.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20905 1138 20651 32085 41464 41464 1 YEEENFYLEPYLK Unmodified 1735.7981 0.79811888 715 P14927 UQCRB Cytochrome b-c1 complex subunit 7 yes yes 0 0 0 0 0 4.5 0.5 1 1 71.132 71.132 3 3.7559E-06 22570 TMT1-3 111.31 101.03 183.65 346.77 219.83 212.48 209.72 248.79 174 341 232 210 218 239 3 3 3 3 3 3 51779 20906 715 20652 32086;32087 41465;41466;41467 41465 3 YEEIDNAPEER Unmodified 1363.5892 0.58918874 1180 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 0 2 0 1 40.664 40.664 2 2.6701E-06 11220 TMT1-1 129.89 103.85 30.509 82.524 32.202 36.93 26.54 61.071 29 80 36 36 29 58 1 1 1 1 1 1 9988.4 20907 1180 20653 32088 41468 41468 1 YEELFPAFSDSR Unmodified 1459.662 0.66195975 1304 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 0 5.5 0.5 1 1 69.73 69.73 2;3 1.4948E-07 21708 TMT1-4 127.87 75.287 91.996 115.04 130.22 93.295 89.623 128.56 87 116 131 94 94 123 2 2 2 2 2 2 30653 20908 1304 20654 32089;32090 41469;41470 41469 2 YEETVFYGLQYILNK Unmodified 1878.9404 0.94036644 1117 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 0 8 0 1 91.734 91.734 3 0.00093622 29690 TMT1-7 69.108 41.459 14.863 14.72 14.239 23.197 0 23.452 14 15 15 22 0 22 1 1 1 1 0 1 2371 20909 1117 20655 32091 41471 41471 1 YEEVEYYYQR Unmodified 1440.6198 0.61976058 1613 Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 0 3 0 1 51.952 51.952 2 0.00039993 16031 TMT1-2 87.258 61.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20910 1613 20656 32092 41472 41472 1 YEEVSVSGFEEFHR Unmodified 1713.7635 0.76346471 2513 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 0 3.5 0.5 1 1 55.089 55.089 3 6.8113E-19 16218 TMT1-3 160.52 134.88 99.901 215.1 159.64 147.33 145.18 235.71 95 211 166 146 153 225 3 3 3 3 3 3 41885 20911 2513 20657 32093;32094 41473;41474;41475 41474 3 YEFGIFNQK Unmodified 1144.5553 0.55530983 648 P11216 PYGB Glycogen phosphorylase, brain form no no 0 0 0 0 0 7 0 1 63.667 63.667 2 3.9304E-06 18910 TMT1-6 163.72 101.52 184.63 154.16 217.2 117.79 197.06 195.85 174 160 215 123 200 189 1 1 1 1 1 1 31064 20912 648 20658 32095 41476 41476 1 YEGGYPALTEVMNK Unmodified 1570.7337 0.73374448 263 O75323 GBAS Protein NipSnap homolog 2 yes yes 0 0 0 0 0 6 0 1 64.88 64.88 3 0.0072799 20017 TMT1-5 40.237 17.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20913 263 20659 32096 41477 41477 1 YEGSGEDGGAAAQSLYIANHAY Unmodified 2242.9767 0.97670496 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 0 3 0 1 58.349 58.349 3 3.1648E-06 18527 TMT1-2 72.09 55.968 23.382 29.062 13.015 30.392 28.16 22.648 22 29 15 29 29 22 1 1 1 1 1 1 10542 20914 609 20660 32097 41478 41478 1 YEGSYALTSEEAER Unmodified 1603.7002 0.70019575 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 2.5 0.5 1 1 45.815 45.815 2;3 5.6499E-06 13605 TMT1-2 101.45 77.621 46.518 81.185 47.767 51.849 55.668 76.229 44 80 51 51 58 73 1 1 1 1 1 1 15088 20915 372 20661 32098;32099 41479;41480 41480 2 YEIEETETVTK Unmodified 1340.6347 0.63474195 1597 Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 CALD1 Caldesmon yes no 0 0 0 0 0 2.67 0.471 1 2 50.076 50.076 2;3 2.3578E-07 15211 TMT1-2 141.08 128.46 545.88 590.93 447.04 425.63 418.67 763.04 514 597 466 421 444 727 4 4 4 4 4 4 145540 20916 1597 20662 32100;32101;32102 41481;41482;41483;41484 41483 4 YEILTPNSIPK Unmodified 1273.6918 0.69180331 1019 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 0 4.67 2.62 1 1 1 61.011 61.011 3 3.7296E-06 17827 TMT1-6 120.32 81.951 2434.7 3258.5 3003.3 2314.5 2651.3 2761 2301 3264 3063 2327 2727 2661 6 6 6 6 6 6 399490 20917 1019 20663 32103;32104;32105 41485;41486;41487;41488;41489;41490 41489 6 YEIPESLLAQR Unmodified 1317.6929 0.69286595 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 5 0 1 62.369 62.369 2 0.0021611 18872 TMT1-4 94.309 81.683 238.09 350.89 262.46 288.1 296.24 278.3 225 349 275 283 305 269 3 3 3 3 3 3 24829 20918 2378 20664 32106 41491;41492;41493 41492 3 YELGRPAANTK Unmodified 1218.6357 0.63568542 1417 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 1 6 0 1 36.131 36.131 3 0.012308 8644 TMT1-5 65.179 27.093 199.94 344.07 188.04 223.4 253.09 250.75 189 339 203 219 260 242 1 1 1 1 1 1 14772 20919 1417 20665 32107 41494 41494 1 YELISETGGSHDKR Unmodified 1590.7638 0.76379906 1655 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;Q12906;Q12906-7;Q96SI9-2;Q96SI9 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein yes no 0 0 0 0 1 5 0 1 38.434 38.434 4 0.00025083 9403 TMT1-4 78.287 58.009 160.23 286.32 238.39 171.29 248.84 169.86 152 283 244 174 251 166 1 1 1 1 1 1 14928 20920 1655 20666 32108 41495 41495 1 YELLNVLEFTSAR Unmodified 1553.809 0.80895834 2968 Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 ATP8A1 Phospholipid-transporting ATPase IA yes no 0 0 0 0 0 7 0 1 81.284 81.284 2 0.0063206 25803 TMT1-6 74.537 48.978 46.783 34.431 42.966 52.544 33.958 37.407 44 36 44 51 36 36 1 1 1 1 1 1 6980.4 20921 2968 20667 32109 41496 41496 1 YELQLANPK Unmodified 1074.571 0.5709599 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 6 0 1 53.193 53.193 3 0.0032026 15412 TMT1-5 79.974 47.368 68.884 110.48 51.038 106.46 105.49 105.72 65 109 58 102 109 102 1 1 1 1 1 1 8739.3 20922 2028 20668 32110 41497 41497 1 YEPFSFADDIGSNNCGYYDLQAVLTHQGR Unmodified 3336.4782 0.47820508 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 0 5.5 0.5 1 1 81.385 81.385 3;4 7.8982E-05 25625 TMT1-5 42.93 41.348 23.413 21.593 14.148 15.009 28.867 22.628 22 22 15 15 29 22 1 1 1 1 1 1 3284 20923 1298 20669 32111;32112 41498;41499 41499 2 YEQGTGCWQGPNR Unmodified 1551.6525 0.65247447 700 P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 0 4 0 1 40.089 40.089 3 2.5724E-09 10345 TMT1-3 128.61 108.52 91.908 146.1 118.63 117.32 127.52 120.02 87 145 123 116 131 116 1 1 1 1 1 1 18162 20924 700 20670 32113 41500 41500 1 YEQQTQSLVVHVK Unmodified 1557.8151 0.81510635 2378 Q96C24 SYTL4 Synaptotagmin-like protein 4 yes yes 0 0 0 0 0 7 1 1 1 46.522 46.522 3 1.07E-08 12257 TMT1-7 125.53 100.74 231 288.88 245.21 249.55 250.37 325.45 218 290 254 246 261 312 2 2 2 2 2 2 30426 20925 2378 20671 32114;32115 41501;41502 41502 2 YESLELCRPVLQQGR Unmodified 1846.936 0.93596654 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 1 5.5 0.5 1 1 51.161 51.161 3 7.51E-14 14410 TMT1-5 109.48 86.009 138.42 234.83 160.49 121.68 169.62 197.7 131 232 167 123 174 190 1 1 1 1 1 1 13831 20926 1540 20672 32116;32117 41503;41504 41504 2 YESLTDPSK Unmodified 1038.487 0.4869555 545;561;1955;1954 P08238;Q58FF7;P07900;P07900-2;Q58FF6;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 0 3.75 1.64 1 1 2 46.38 46.38 2;3 0.00026259 12744 TMT1-3 143.04 78.28 909.87 1399 983.78 1067.8 1185.8 1200.6 860 1388 1035 1051 1220 1158 5 5 5 5 5 5 178450 20927 561;545;1954;1955 20673 32118;32119;32120;32121 41505;41506;41507;41508;41509 41506 5 YESLTDPSKLDSGK Unmodified 1538.7464 0.74641766 545;561;1955 P08238;Q58FF7;P07900;P07900-2;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 1 5.67 0.471 1 2 51.31 51.31 3;4 3.217E-07 14608 TMT1-5 105 87.749 1764.9 2458.9 1921.3 1354 1418.3 2485.9 1667 2453 1976 1368 1497 2370 3 3 3 3 3 3 184430 20928 561;545;1955 20674 32122;32123;32124 41510;41511;41512 41512 3 YESSEIR Unmodified 882.40831 0.40831125 2049 Q6UXH1-3;Q6UXH1-2;Q6UXH1-4;Q6UXH1;Q6UXH1-6;Q6UXH1-5 CRELD2 Cysteine-rich with EGF-like domain protein 2 yes no 0 0 0 0 0 2 0 1 32.21 32.21 2 0.0038371 7872 TMT1-1 85.359 5.4203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20929 2049 20675 32125 41513 41513 1 YESSTASALVA Unmodified 1097.5241 0.52406928 1427 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 0 3 0 1 53.979 53.979 2 5.6025E-07 16879 TMT1-2 148.38 125.64 53.731 96.032 85.265 63.666 122.14 135.09 51 95 87 65 124 130 2 2 2 2 2 2 50830 20930 1427 20676 32126 41514;41515 41515 2 YESWEDDQVPK Unmodified 1394.599 0.59902514 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 3 0 1 53.074 53.074 2 0.00017515 16474 TMT1-2 85.355 60.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20931 1229 20677 32127 41516 41516 1 YETTGLSEAR Unmodified 1125.5302 0.53021729 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 2.67 0.471 1 2 38.241 38.241 2 1.7293E-06 10241 TMT1-1 161.27 102.29 99.471 161.92 96.585 79.966 91.299 97.599 94 160 102 80 94 94 1 1 1 1 1 1 19402 20932 1878 20678 32128;32129;32130 41517;41518;41519 41517 3 YEVSVYALK Unmodified 1070.5648 0.56481189 442 P02751;P02751-13;P02751-7;P02751-1;P02751-3;P02751-17;P02751-8;P02751-14;P02751-9;P02751-6;P02751-10;P02751-5;P02751-11;P02751-4;P02751-12 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 0 6.5 0.5 1 1 59.59 59.59 2 8.2049E-18 17899 TMT1-5 160.88 100.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20933 442 20679 32131;32132 41520;41521 41520 2 YEWDVAEAR Unmodified 1137.5091 0.50908792 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 2.5 0.5 1 1 51.563 51.563 2 2.6773E-05 15767 TMT1-2 154.12 126.86 394.75 701.21 506.23 423.03 718.29 570.07 374 692 526 427 724 554 3 3 3 3 3 3 126750 20934 685 20680 32133;32134 41522;41523;41524 41523 3 YEYHWADGTNIK Unmodified 1495.6732 0.67319314 2083 Q9H8S9;Q7L9L4;Q7L9L4-2;Q9H8S9-2 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B yes no 0 0 0 0 0 5 0 1 49.88 49.88 3 0.0001124 13934 TMT1-4 97.779 75.246 61.212 94.354 91.817 88.032 84.368 75.411 58 94 94 87 87 73 1 1 1 1 1 1 22330 20935 2083 20681 32135 41525 41525 1 YEYQPFAGK Unmodified 1101.5131 0.51311067 250 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 0 4.33 2.36 1 2 52.653 52.653 2;3 6.4606E-05 15146 TMT1-5 152.34 86.268 865.1 1060.6 1040.8 686.22 1012.2 1133.1 817 1068 1053 702 1035 1090 3 3 3 3 3 3 479210 20936 250 20682 32136;32137;32138 41526;41527;41528 41528 3 YFAATQFEPLAAR Unmodified 1483.746 0.74596415 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 0 7 0 1 64.703 64.703 2 0.0035575 19330 TMT1-6 57.401 36.567 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20937 2882 20683 32139 41529 41529 1 YFAEALGPLQSFQAR Unmodified 1696.8573 0.85730551 617;1214 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2;P50225;P50226 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 0 0 0 0 0 8 0 1 73.416 73.416 3 1.1215E-06 22828 TMT1-7 81.619 65.863 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20938 617;1214 20684 32140 41530 41530 1 YFAEALGPLQSFQARPDDLLINTYPK Unmodified 2966.5178 0.5178087 617 P0DMN0;P0DMM9;P0DMM9-3;P0DMM9-2 SULT1A4;SULT1A3 Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 0 0 0 0 1 8 0 1 81.578 81.578 4 8.3994E-12 26043 TMT1-7 89.946 87.82 154.31 249.33 183.75 136.69 169.51 211.56 146 247 190 138 175 203 3 3 3 3 3 3 33302 20939 617 20685 32141 41531;41532;41533 41533 3 YFAEALGPLQSFQARPDDLLISTYPK Unmodified 2939.5069 0.50690966 1214 P50225;P50226 SULT1A1;SULT1A2 Sulfotransferase 1A1;Sulfotransferase 1A2 yes no 0 0 0 0 1 8 0 1 82.233 82.233 4 1.9927E-05 26289 TMT1-7 60.991 58.584 100.59 123.13 121.01 93.821 90.866 122.13 95 124 123 94 95 117 2 2 2 2 2 2 36500 20940 1214 20686 32142 41534;41535 41535 2 YFAGNLASGGAAGATSLCFVYPLDFAR Unmodified 2795.3377 0.33773584 665 P12236;P12235 SLC25A6;SLC25A4 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 yes no 0 0 0 0 0 9 0 2 85.801 85.801 3;4 7.3163E-47 25784 TMT1-8 136.77 115.4 62.304 79.224 101.39 87.687 72.367 98.139 59 80 102 87 73 94 3 3 3 3 2 3 116490 20941 665 20687 32143;32144 41536;41537;41538 41536 3 YFAQEALTVLSLA Unmodified 1424.7551 0.75513185 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 0 7.5 0.5 1 1 101.8 101.8 2 0.00037528 33024 TMT1-6 95.775 74.268 47.609 73.605 51.271 56.141 48.801 57.237 45 73 54 55 51 55 4 4 4 4 4 4 43930 20942 956 20688 32145;32146 41539;41540;41541;41542 41539 4 YFDEISQDTGK Unmodified 1301.5776 0.57756142 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 4 0 1 56.217 56.217 2 1.2159E-06 16724 TMT1-3 141.08 133.52 99.676 107.45 108.2 62.564 108.06 89.658 94 109 109 65 109 87 1 1 1 1 1 1 16956 20943 1439 20689 32147 41543 41543 1 YFDGSGGNNHAVEHYR Unmodified 1821.7819 0.78190874 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 0 4 0 1 32.748 32.748 4 0.00019585 7430 TMT1-3 75.463 66.52 61.497 72.483 62.36 74.325 92.877 59.178 58 73 65 73 94 58 1 1 1 1 1 1 9656.2 20944 1122 20690 32148 41544 41544 1 YFDLGLPNR Unmodified 1093.5556 0.55564418 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 0 7 0 1 62.928 62.928 2 0.00068026 18665 TMT1-6 131.03 84.196 237.9 293.15 343.99 260.27 355.41 389.61 225 296 346 263 364 375 2 2 2 2 2 2 78003 20945 1164 20691 32149 41545;41546 41546 2 YFDLGLPNRDQTDDQVTIDSALATQK Unmodified 2923.4199 0.41994515 1164 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 1 5 0 1 70.792 70.792 4 4.2604E-16 22150 TMT1-4 98.019 79.32 114.97 221.77 145.43 115.61 133.6 158.22 109 218 152 116 138 152 1 1 1 1 1 1 35038 20946 1164 20692 32150 41547 41547 1 YFDPANGK Unmodified 910.41848 0.418482 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6 0 1 47.33 47.33 2 0.0053803 13092 TMT1-5 74.255 42.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20947 685 20693 32151 41548 41548 1 YFDRVDENNPEYLR Unmodified 1828.838 0.83802663 1023 P35611-2;P35611-6;P35611;P35611-3;P35611-4;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 1 3 0 1 49.553 49.553 3 1.4512E-05 15063 TMT1-2 100.11 77.766 61.389 94.845 61.703 58.961 40.17 91.596 58 94 65 58 44 87 1 1 1 1 1 1 16677 20948 1023 20694 32152 41549 41549 1 YFEADPPGQVAASPDPTT Unmodified 1861.837 0.83702358 183 O43598 DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 yes yes 0 0 0 0 0 3 0 1 62.7 62.7 3 1.7701E-10 20258 TMT1-2 84.195 75.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20949 183 20695 32153 41550 41550 1 YFECQAK Unmodified 944.4062 0.40620276 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 5.5 0.5 1 1 42.742 42.742 2 0.0081568 11270 TMT1-5 119.21 83.016 184.12 285.47 192.8 197.24 292.32 300.8 174 283 203 196 298 290 2 2 2 2 2 2 20366 20950 2461 20696 32154;32155 41551;41552 41552 2 YFEITDESPYVHYLNTFSSK Unmodified 2439.1271 0.12705759 2913 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 0 8.25 0.829 1 1 2 73.785 73.785 3 7.4469E-18 22972 TMT1-7 123.83 110.37 246.69 262.91 335.18 206.26 233.01 249.19 233 268 334 211 240 240 3 3 3 3 3 3 108890 20951 2913 20697 32156;32157;32158;32159 41553;41554;41555;41556 41554 4 YFEITEEPPYIHFLNTFTSK Unmodified 2475.1998 0.1998286 2512 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 0 8.5 0.5 1 1 84.344 84.344 4 0.0099599 24998 TMT1-8 41.521 7.1163 53.961 56.736 79.991 64.941 71.065 67.262 51 58 80 65 73 65 2 2 2 2 2 2 8756.9 20952 2512 20698 32160;32161 41557;41558 41558 2 YFEITSEAPFLHYLSMFSSK Unmodified 2396.1399 0.13987088 971 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 0 9 0 2 88.754 88.754 3;4 3.7186E-25 26907 TMT1-8 133.16 122.76 207.52 322.14 196.29 261.23 249.26 372.38 196 319 211 254 262 356 3 3 3 3 3 3 80527 20953 971 20699 32162;32163 41559;41560;41561 41559 3 YFFFDDGNGLK Unmodified 1321.5979 0.59790293 1367 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 0 7 0 1 73.04 73.04 3 0.00094375 22586 TMT1-6 87.298 48.664 54.095 88.408 30.659 60.961 32.215 76.899 51 87 36 58 36 73 1 1 1 1 1 1 6901.6 20954 1367 20700 32164 41562 41562 1 YFFTSVSR Unmodified 1005.492 0.4919813 474 P04439;P04439-2 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 0 0 0 0 0 9 0 1 55.307 55.307 2 0.0094447 13833 TMT1-8 91.783 47.172 91.96 114.94 136.44 123.83 131.87 197.71 87 116 138 123 138 189 1 1 1 1 1 1 20018 20955 474 20701 32165 41563 41563 1 YFGDIISVGQR Unmodified 1253.6404 0.64043645 2382 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 0 7 0 1 64.084 64.084 2 2.4587E-06 19037 TMT1-6 131.52 102.6 75.994 125.04 106.16 87.359 74.688 144.98 72 124 109 87 80 138 2 2 2 2 2 2 18833 20956 2382 20702 32166 41564;41565 41564 2 YFHPPAHLQAK Unmodified 1307.6775 0.67749065 2724 Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;Q5VZF2-3;Q5VZF2-2;Q5VZF2 MBNL1;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 yes no 0 0 0 0 0 9 0 1 39.652 39.652 4 0.026655 8045 TMT1-8 42.338 11.768 53.916 87.91 61.14 81.805 105.86 128.1 51 87 65 80 109 123 1 1 1 1 1 1 2750.5 20957 2724 20703 32167 41566 41566 1 YFHVVIAGPQDSPFEGGTFK Unmodified 2195.0688 0.068754852 1377 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 0 7.5 0.5 1 1 67.466 67.466 3 5.7909E-19 20422 TMT1-7 129.11 114.5 161.64 209.47 247.21 149.46 161.59 211.79 153 211 247 153 168 203 3 3 3 3 3 3 84420 20958 1377 20704 32168;32169 41567;41568;41569 41568 3 YFILNSSCLR Unmodified 1271.6332 0.63324258 2440 Q96P48-3;Q96P48;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1;Q96P48-5 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 0 9 0 1 61.801 61.801 2 0.026937 16435 TMT1-8 62.271 31.851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20959 2440 20705 32170 41570 41570 1 YFILPDSLPLDTLLVDVEPK Unmodified 2286.2399 0.23990251 1432 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 0 0 0 0 0 7 0.707 1 2 1 100.78 100.78 3;4 9.2593E-14 32784 TMT1-6 112.82 89.916 50.78 117.75 70.805 65.095 107.11 83.479 48 115 74 65 108 81 3 5 4 4 5 4 44280 20960 1432 20706 32171;32172;32173;32174 41571;41572;41573;41574;41575 41573 5 YFLFYDGETVSGK Unmodified 1524.7137 0.71366097 1937 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 0 0 0 0 0 7.5 0.5 1 1 71.941 71.941 3 1.3022E-05 22150 TMT1-6 103.75 86.673 92.315 115.93 75.863 73.54 91.851 90.121 87 116 80 73 94 87 1 1 1 1 1 1 18519 20961 1937 20707 32175;32176 41576;41577 41576 2 YFLHQSHEER Unmodified 1344.6211 0.62109799 453 P02794 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 0 0 0 0 0 5 0 1 29.687 29.687 4 0.0054718 6008 TMT1-4 67.726 61.692 38.082 58.437 42.318 35.745 57.472 45.264 36 58 44 36 58 44 1 1 1 1 1 1 4048.1 20962 453 20708 32177 41578 41578 1 YFLQAAK Unmodified 839.45414 0.45413923 2717 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 0 9 0 1 53.028 53.028 2 0.0085166 12987 TMT1-8 129.16 72.65 148.23 354.74 394.72 238.81 289.79 379.75 142 349 395 245 300 364 1 1 1 1 1 1 23581 20963 2717 20709 32178 41579 41579 1 YFLVGAGAIGCELLK Unmodified 1609.8538 0.85380004 845 P22314-2;P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 0 9 0 1 80.556 80.556 3 4.8503E-08 23828 TMT1-8 107.14 65.6 177.08 217.16 170.42 161.04 195.83 265.18 167 218 177 160 203 254 2 2 2 2 2 2 55247 20964 845 20710 32179 41580;41581 41581 2 YFLWVVK Unmodified 953.53747 0.53747492 1464 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 0 9 0 1 75.422 75.422 2 0.00039194 21839 TMT1-8 161.68 99.838 469.66 895.53 736.37 573.01 615.51 773.41 446 883 756 575 639 742 2 2 2 2 2 2 107070 20965 1464 20711 32180 41582;41583 41583 2 YFNEFLDGELK Unmodified 1373.6503 0.65033243 71 O00471 EXOC5 Exocyst complex component 5 yes yes 0 0 0 0 0 5 0 1 73.519 73.519 3 0.007303 23223 TMT1-4 45.257 22.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20966 71 20712 32181 41584 41584 1 YFNSYTLTGR Unmodified 1220.5826 0.58258722 2423 Q96IX5 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 0 0 0 0 0 8 0 1 54.172 54.172 2 0.012037 15270 TMT1-7 81.335 58.806 54.066 64.584 55.638 66.689 55.279 67.713 51 65 58 65 58 65 1 1 1 1 1 1 7431.4 20967 2423 20713 32182 41585 41585 1 YFPAGNVVNEGFFEENVLPPKK Unmodified 2494.2533 0.25326116 2652 Q9H4G4 GLIPR2 Golgi-associated plant pathogenesis-related protein 1 yes yes 0 0 0 0 1 7 0 1 72.172 72.172 4 4.4378E-06 22284 TMT1-6 67.866 60.506 84.507 131.81 112.27 110.22 118.39 182.11 80 131 116 109 124 174 2 2 2 2 2 2 16665 20968 2652 20714 32183 41586;41587 41586 2 YFPFMDLK Unmodified 1059.5099 0.50993955 2259 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 0 9 0 1 75.924 75.924 2 0.0034929 21999 TMT1-8 114.6 66.319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20969 2259 20715 32184 41588 41588 1 YFPTQALNFAFK Unmodified 1445.7343 0.73433683 665;488 P05141;Q9H0C2;P12236;P12235 SLC25A5;SLC25A31;SLC25A6;SLC25A4 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1 no no 0 0 0 0 0 9 0 2 77.202 77.202 2;3 9.6915E-13 22440 TMT1-8 160.33 116.82 558.07 810.83 736.91 664.94 781.65 929.63 528 809 756 662 807 893 2 2 2 2 2 2 265990 20970 488;665 20716 32185;32186 41589;41590 41589 2 YFPYYGK Unmodified 936.43815 0.43815481 1300 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 0 8 0 1 57.009 57.009 2 0.028664 16339 TMT1-7 91.26 76.109 130.48 159.5 116.22 148.93 139.91 143.12 123 160 123 145 145 138 1 1 1 1 1 1 21861 20971 1300 20717 32187 41591 41591 1 YFQFQEEGK Unmodified 1174.5295 0.52948901 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 0 6 0 1 54.812 54.812 3 0.0069762 16014 TMT1-5 71.614 58.987 192.18 193.67 178.24 112.64 187.39 149.22 181 197 181 116 189 145 1 1 1 1 1 1 25246 20972 129 20718 32188 41592 41592 1 YFQFQEEGKEGENR Unmodified 1759.7802 0.7801774 129 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 1 3.75 1.64 1 1 2 47.418 47.418 3;4 1.3291E-22 13261 TMT1-3 177.36 151.36 1390 2066.3 1775.2 1440.6 1522.7 1919.1 1315 2058 1821 1441 1582 1841 6 6 6 6 6 6 161930 20973 129 20719 32189;32190;32191;32192 41593;41594;41595;41596;41597;41598 41595 6 YFQHLLGK Unmodified 1004.5444 0.54435122 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 9 0 1 55.044 55.044 3 0.0011174 13736 TMT1-8 95.909 64.724 234.83 571.52 444.05 311.22 467.86 488.74 224 559 456 317 477 471 1 1 1 1 1 1 42113 20974 3017 20720 32193 41599 41599 1 YFSGPKPK Unmodified 922.49125 0.49125301 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 1 9 0 1 41.023 41.023 3 0.015734 8465 TMT1-8 58.676 27.304 607.16 639.06 566.58 415.17 712.57 686.42 572 648 579 423 722 663 1 1 1 1 1 1 35979 20975 772 20721 32194 41600 41600 1 YFTEAGLK Unmodified 927.47018 0.47018322 2073 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 0 6.5 0.5 1 1 53.63 53.63 2 0.0058689 15555 TMT1-5 112.94 44.96 183.38 408.64 211.39 148.51 267.09 217.3 174 399 225 152 269 211 2 2 2 2 2 2 31216 20976 2073 20722 32195;32196 41601;41602 41601 2 YFTFSGICQYLLAR Unmodified 1737.8549 0.85486267 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 2 83.323 83.323 2;3 1.0153E-09 24821 TMT1-8 118.9 73.472 68.721 94.913 91.733 88.302 70.247 59.823 65 95 94 87 73 58 2 2 2 2 2 2 35529 20977 471 20723 32197;32198 41603;41604 41603 2 YFTLGLPTGSTPLGCYK Unmodified 1873.9284 0.92842155 2254 Q8TDQ7-3;Q8TDQ7-2;Q8TDQ7 GNPDA2 Glucosamine-6-phosphate isomerase 2 no no 0 0 0 0 0 9 0 1 75.63 75.63 3 9.1038E-15 21873 TMT1-8 120.66 99.806 46.703 50.4 42.763 35.59 64.295 59.993 44 51 44 36 65 58 1 1 1 1 1 1 10078 20978 2254 20724 32199 41605 41605 1 YFTWDPSR Unmodified 1070.4821 0.48214489 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 7 0 1 59.21 59.21 2 0.0057335 17107 TMT1-6 114.78 64.656 238.35 334.33 234.08 267.42 265.54 316.49 225 333 247 262 276 304 2 2 2 2 2 2 54564 20979 1792 20725 32200 41606;41607 41606 2 YFVEAGAMAVR Unmodified 1212.5961 0.59612879 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 7 0 1 56.859 56.859 2 0.0011329 16206 TMT1-6 99.815 83.612 53.959 88.029 53.849 75.272 69.527 98.22 51 87 58 73 73 94 1 1 1 1 1 1 13149 20980 770 20726 32201 41608 41608 1 YFVGYLGER Unmodified 1102.5447 0.54474515 807 P20292 ALOX5AP Arachidonate 5-lipoxygenase-activating protein yes yes 0 0 0 0 0 7 0 1 59.074 59.074 2 0.00029484 17110 TMT1-6 95.815 62.077 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20981 807 20727 32202 41609 41609 1 YFYLFPGN Unmodified 1019.4753 0.4752686 1189 P49662-2;P49662;Q6UXS9-3;Q6UXS9 CASP4;CASP12 Caspase-4;Caspase-4 subunit 1;Caspase-4 subunit 2;Inactive caspase-12 yes no 0 0 0 0 0 9 0 1 84.179 84.179 2 0.01791 25220 TMT1-8 80.377 66.706 46.739 42.942 43.187 36.127 34.419 45.922 44 44 44 36 36 44 1 1 1 1 1 1 12909 20982 1189 20728 32203 41610 41610 1 YFYLLENLAWVK Unmodified 1557.8232 0.82315184 1917 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 0 0 9 0 1 89.963 89.963 3 5.7145E-05 27429 TMT1-8 88.596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20983 1917 20729 32204 41611 41611 1 YFYTGAEILGLIDEK Unmodified 1730.8767 0.87670355 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 7 0 2 88.091 88.091 2;3 2.8571E-07 28351 TMT1-6 88.338 80.233 23.222 44.807 26.529 45.877 33.715 53.404 22 44 29 44 36 51 1 1 1 1 1 1 9112.9 20984 651 20730 32205;32206 41612;41613 41613 2 YFYTSVSR Unmodified 1021.4869 0.48689592 425 P01889 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain yes yes 0 0 0 0 0 7 0 1 47.332 47.332 2 0.014417 12456 TMT1-6 93.992 57.016 84.529 139.42 102.18 156.39 194.29 103.19 80 138 109 152 196 102 1 1 1 1 1 1 12939 20985 425 20731 32207 41614 41614 1 YFYVSAEQVVQGMK Unmodified 1647.7967 0.79667909 379 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 0 8 0 1 72.771 72.771 3 1.5888E-14 22593 TMT1-7 130.1 82.553 68.835 110.34 59.353 90.013 81.895 144.77 65 109 65 87 87 138 1 1 1 1 1 1 14875 20986 379 20732 32208 41615 41615 1 YGAFGLPITVAHVDGQTHMLFGSDR Unmodified 2688.3119 0.31185545 2969 Q9Y2Q3;Q9Y2Q3-3;Q9Y2Q3-2;Q9Y2Q3-4 GSTK1 Glutathione S-transferase kappa 1 yes no 0 0 0 0 0 8 0 1 68.833 68.833 4 3.2029E-19 21041 TMT1-7 107.56 92.139 53.878 72.694 80.429 33.634 48.92 83.884 51 73 80 36 51 80 1 1 1 1 1 1 14850 20987 2969 20733 32209 41616 41616 1 YGAFVKPAVVTVGDFPEEDYGLDEI Unmodified 2729.3112 0.31122955 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 1 5.67 0.471 1 2 84.947 84.947 3;4 6.9237E-10 27841 TMT1-5 72.876 66.153 23.291 28.808 28.548 22.088 13.627 30.525 22 29 29 22 15 29 1 1 1 1 1 1 9837.6 20988 2461 20734 32210;32211;32212 41617;41618;41619 41618 3 YGASLLHTYAGPSLLVLGPR Unmodified 2084.1419 0.14186022 2306 Q92614-2;Q92614-3;Q92614-4;Q92614 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 0 9 0 1 69.869 69.869 3 1.429E-05 19628 TMT1-8 67.168 45.328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20989 2306 20735 32213 41620 41620 1 YGDFNKEVHK Unmodified 1235.5935 0.59348625 894 P26038 MSN Moesin yes yes 0 0 0 0 1 6.5 0.5 1 1 40.266 40.266 4 0.00092133 10162 TMT1-5 94.363 29.633 1004.7 1378.3 759.65 991.24 620.44 1471.5 947 1371 824 959 685 1397 3 3 3 3 3 3 67550 20990 894 20736 32214;32215 41621;41622;41623 41621 3 YGDSGEQIAGFVK Unmodified 1369.6514 0.65139506 634 P10619-2;P10619 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 0 5 0 1 57.427 57.427 3 0.0075649 16963 TMT1-4 59.306 39.199 130.43 128.05 151.69 99.634 149.51 142.84 123 131 152 102 152 138 1 1 1 1 1 1 48521 20991 634 20737 32216 41624 41624 1 YGEMPVDK Unmodified 937.42152 0.42151847 1700 Q13418 ILK Integrin-linked protein kinase yes yes 0 0 0 0 0 4 0.816 1 1 1 46.065 46.065 2 0.010367 12639 TMT1-3 99.305 75.748 991.09 1288.8 951.81 831.8 759.6 1439.8 935 1289 990 826 810 1371 4 4 4 4 4 4 168700 20992 1700 20738 32217;32218;32219 41625;41626;41627;41628 41626 4 YGEPGEVFINK Unmodified 1251.6136 0.61355299 857 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 0 5 0 1 56.644 56.644 2 1.8947E-06 16587 TMT1-4 135.86 117.52 91.995 153.9 97.472 71.724 119.92 158.61 87 152 102 73 123 152 1 1 1 1 1 1 22278 20993 857 20739 32220 41629 41629 1 YGEPSEVFINR Unmodified 1309.6303 0.63026569 2283 Q8WXF1-2;Q8WXF1 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 0 4 0 1 51.705 51.705 2 0.00012003 14980 TMT1-3 112.3 72.422 123.54 114.09 59.901 66.455 54.227 98.657 116 116 65 65 58 94 1 1 1 1 1 1 10519 20994 2283 20740 32221 41630 41630 1 YGEYFPGTGDLR Unmodified 1373.6252 0.62518031 1717 Q13547;Q92769-3;Q92769 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 yes no 0 0 0 0 0 4.5 0.5 1 1 57.11 57.11 2 4.5945E-07 17188 TMT1-3 105.17 79.948 54.062 64.573 56.322 51.333 55.985 67.692 51 65 58 51 58 65 1 1 1 1 1 1 8149.1 20995 1717 20741 32222;32223 41631;41632 41631 2 YGFDQFALYK Unmodified 1250.5972 0.59717465 2690 Q9HCN6-2;Q9HCN6;Q9HCN6-3 GP6 Platelet glycoprotein VI yes no 0 0 0 0 0 8 0 1 68.953 68.953 3 0.00082435 21028 TMT1-7 93.556 62.684 237.89 319.02 323.96 213.47 292.34 278.41 225 320 327 218 298 269 2 2 2 2 2 2 63190 20996 2690 20742 32224 41633;41634 41633 2 YGFGEAGKPK Unmodified 1052.5291 0.52909508 1706 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 0 1 7.5 0.5 1 1 41.942 41.942 3 0.020084 10359 TMT1-7 63.076 36.478 276.14 367.14 346.7 362.63 367.31 393.53 261 368 357 357 380 379 2 2 2 2 2 2 23528 20997 1706 20743 32225;32226 41635;41636 41636 2 YGFIEGHVVIPR Unmodified 1385.7456 0.74557022 730 P16070;P16070-15;P16070-5;P16070-7;P16070-3;P16070-6;P16070-4;P16070-17;P16070-9;P16070-8;P16070-16;P16070-10;P16070-11;P16070-13;P16070-14;P16070-12;P16070-18 CD44 CD44 antigen yes no 0 0 0 0 0 7 0 1 54.435 54.435 3 6.0295E-09 15228 TMT1-6 137.01 108.05 215.08 299.12 206.26 237.5 259.22 327.33 203 298 218 233 269 314 2 2 2 2 2 2 45308 20998 730 20744 32227 41637;41638 41637 2 YGFSDPLTFSSVVELINHYR Unmodified 2343.1535 0.15354711 921 P27986;P27986-4;P27986-5;P27986-3;P27986-2 PIK3R1 Phosphatidylinositol 3-kinase regulatory subunit alpha yes no 0 0 0 0 0 9 0 1 87.805 87.805 3 2.0889E-05 26592 TMT1-8 65.924 44.083 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20999 921 20745 32228 41639 41639 1 YGGAPQALTLK Unmodified 1117.6132 0.61315906 369 O95782-2;O95782 AP2A1 AP-2 complex subunit alpha-1 yes no 0 0 0 0 0 8 0 1 53.254 53.254 3 0.00080644 14892 TMT1-7 62.466 39.992 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21000 369 20746 32229 41640 41640 1 YGGDEIPFSPYR Unmodified 1399.6408 0.64083038 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 3.33 1.7 1 1 1 59.681 59.681 2 5.6714E-44 18073 TMT1-3 225.67 97.402 2438.2 2729.3 2315.4 1831.6 2206.3 3237.4 2298 2756 2378 1840 2296 3096 5 5 5 5 5 5 728490 21001 831 20747 32230;32231;32232 41641;41642;41643;41644;41645 41643 5 YGGGGYGR Unmodified 785.34565 0.34565141 1549 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 yes yes 0 0 0 0 0 3 0 1 28.724 28.724 2 0.025445 6828 TMT1-2 85.061 60.862 123.11 151.75 100.12 181.62 137.9 158.1 116 152 109 174 145 152 1 1 1 1 1 1 11771 21002 1549 20748 32233 41646 41646 1 YGGPYHIGGSPFK Unmodified 1378.667 0.66698555 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6.5 3.2 1 2 1 50.218 50.218 3;4 1.3684E-16 13547 TMT1-7 169.65 144 4771.4 5790.5 6137.8 4276.1 5467.2 6775.1 4508 5841 6192 4341 5637 6502 7 7 7 7 7 7 1097800 21003 831 20749 32234;32235;32236;32237 41647;41648;41649;41650;41651;41652;41653 41648 7 YGGQPVPNFPSK Unmodified 1289.6404 0.64043645 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.92 1 1 2 53.23 53.23 3 6.0511E-06 14631 TMT1-6 112.84 89.928 5057.1 6566.3 6693 4774.4 6096.7 7635.5 4781 6597 6770 4838 6289 7326 6 6 6 6 6 6 1249700 21004 831 20750 32238;32239;32240;32241 41654;41655;41656;41657;41658;41659 41656 6 YGHELLINTLITSGADTAK Unmodified 2016.0528 0.052770437 2192 Q8N8A2;Q8N8A2-2;Q8N8A2-4;Q8N8A2-5;Q8N8A2-3;O15084-2;O15084;O15084-4;O15084-1 ANKRD44;ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B;Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A yes no 0 0 0 0 0 7 0 1 65.169 65.169 4 0.0049549 19519 TMT1-6 47.752 17.416 68.815 102.73 69.169 74.22 76.905 98.009 65 102 73 73 80 94 1 1 1 1 1 1 8548.7 21005 2192 20751 32242 41660 41660 1 YGIDKDK Unmodified 837.42323 0.42323303 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 1 6 0 1 38.456 38.456 3 0.028736 9571 TMT1-5 72.547 14.949 396.2 759.55 574.61 582.37 456.15 771.56 376 748 599 572 487 736 1 1 1 1 1 1 30314 21006 1766 20752 32243 41661 41661 1 YGIENVK Unmodified 821.42832 0.42831841 389 P00390-2;P00390-3;P00390;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 0 6 0 1 45.206 45.206 2 0.011901 12255 TMT1-5 103.92 58.606 195 396.53 252.54 308.62 282.9 304.27 185 389 269 301 294 293 1 1 1 1 1 1 18866 21007 389 20753 32244 41662 41662 1 YGIFQYDGPL Unmodified 1171.555 0.55497548 2663 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 0 0 6 0 1 82.144 82.144 2 0.013681 26814 TMT1-5 79.116 79.116 37.917 74.17 56.567 34.752 65.124 67.432 36 73 58 36 66 65 1 1 1 1 1 1 9200 21008 2663 20754 32245 41663 41663 1 YGILADAR Unmodified 877.46577 0.46576654 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 5 0 1 47.975 47.975 2 0.0013035 13248 TMT1-4 143.11 88.342 1650.1 2127.1 2373.4 1866.5 2204.1 2370.8 1561 2141 2396 1875 2267 2283 2 2 2 2 2 2 389450 21009 2112 20755 32246 41664;41665 41665 2 YGINTTDIFQTVDLWEGK Unmodified 2099.0211 0.021135958 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 0 6.4 1.91 1 2 5 2 86.706 86.706 3;4 5.5901E-43 28110 TMT1-6 192.55 159.86 3556.8 4534.7 4116.7 3261.5 4096.9 5240.8 3359 4552 4207 3279 4232 5026 19 19 19 19 19 19 1657500 21010 1052 20756 32247;32248;32249;32250;32251;32252;32253;32254;32255;32256 41666;41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677;41678;41679;41680;41681;41682;41683;41684 41679 19 YGINTTDIFQTVDLWEGKNMACVQR Unmodified 2958.4004 0.40041246 1052 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 1 7 0 1 82.271 82.271 4 0.032369 26220 TMT1-6 33.425 23.003 38.376 35.512 12.202 38.245 19.957 37.807 36 36 15 36 22 36 1 1 1 1 1 1 3786.2 21011 1052 20757 32257 41685 41685 1 YGIPYFETSAATGQNVEK Unmodified 1973.9371 0.93707198 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 0 6 0 1 63.565 63.565 3 2.3871E-10 19564 TMT1-5 110.12 92.206 191.91 230.71 191.18 136.56 153.29 226.95 181 232 196 138 160 217 2 2 2 2 2 2 110300 21012 50 20758 32258 41686;41687 41687 2 YGIQMPSFSK Unmodified 1156.5587 0.55868065 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 9 0 1 62.61 62.61 3 8.6559E-05 16754 TMT1-8 96.015 40.614 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21013 1723 20759 32259 41688 41688 1 YGIVDYMIEQSGPPSK Unmodified 1782.8498 0.84983687 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 0 6.33 0.471 2 1 71.476 71.476 3;4 5.3644E-07 21966 TMT1-6 99.481 81.068 146.29 180.25 147.79 139.27 146.61 204.75 138 181 153 138 153 196 3 3 3 3 3 3 29097 21014 686 20760 32260;32261;32262 41689;41690;41691 41691 3 YGKDATNVGDEGGFAPNILENK Unmodified 2308.0972 0.097154447 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 1 6 0 1 59.894 59.894 4 1.2833E-07 18056 TMT1-5 78.975 53.777 122.8 205.94 106.2 142.34 115.06 205.65 116 203 116 138 123 196 1 1 1 1 1 1 12045 21015 514 20761 32263 41692 41692 1 YGKIETIEVMEDR Unmodified 1581.7709 0.77085827 1259 P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 1 4 0 1 54.719 54.719 3 0.0093923 16143 TMT1-3 62.69 29.495 139.38 128.49 89.372 88.085 89.313 144.56 131 131 94 87 94 138 1 1 1 1 1 1 10656 21016 1259 20762 32264 41693 41693 1 YGLFKEENPYAR Unmodified 1485.7252 0.72522871 1290 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 0 1 7 0 1 51.476 51.476 3 7.6396E-09 14098 TMT1-6 140.91 108.09 293.88 434.64 374.01 239.57 24.243 740.18 278 433 381 240 58 695 1 1 1 1 1 1 31590 21017 1290 20763 32265 41694 41694 1 YGLFPANYVELR Unmodified 1440.7402 0.74015049 1766 Q14247-3;Q14247 CTTN Src substrate cortactin yes no 0 0 0 0 0 7.33 0.471 2 1 69.615 69.615 2 1.5244E-08 21298 TMT1-7 144.77 105.52 77.291 124.51 68.911 49.725 101.58 82.381 73 123 73 51 102 80 1 1 1 1 1 1 42003 21018 1766 20764 32266;32267;32268 41695;41696;41697 41697 3 YGLFPANYVELRQ Unmodified 1568.7987 0.798728 1766 Q14247-3;Q14247 CTTN Src substrate cortactin yes no 0 0 0 0 1 7 0 2 68.322 68.322 2;3 0.0026744 20782 TMT1-6 82.417 71.158 130.2 150.07 172.21 143.52 250.04 263.63 123 152 174 145 254 254 2 2 2 2 2 2 27648 21019 1766 20765 32269;32270 41698;41699 41698 2 YGLIPEEFFQFLYPK Unmodified 1889.9604 0.9603736 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 9 0 3 97.769 97.769 2;3;4 2.0756E-07 30195 TMT1-8 97.551 78.493 153.1 461.83 206.42 286.46 212.52 310.54 146 447 225 277 225 297 5 5 4 5 4 5 72451 21020 875 20766 32271;32272;32273 41700;41701;41702;41703;41704 41701 5 YGLVFAGGASGLQIFPTK Unmodified 1824.9774 0.97742065 1027 P35658-2;P35658-4;P35658;P35658-3;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 0 9 0 1 80.004 80.004 3 2.3655E-18 23581 TMT1-8 112.5 86.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21021 1027 20767 32274 41705 41705 1 YGNANVWK Unmodified 950.46102 0.46101552 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 7.5 0.5 1 1 47.548 47.548 2 0.0077636 12594 TMT1-6 102.72 57.758 114.97 214.19 153.17 146.45 154.41 181.08 109 211 160 145 160 174 2 2 2 2 2 2 13826 21022 1482 20768 32275;32276 41706;41707 41706 2 YGPDAFFNFPGK Unmodified 1358.6295 0.62953741 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 8 0 1 72.657 72.657 3 6.0786E-05 22561 TMT1-7 101.39 70.566 145.81 233.96 182.58 136.09 205.36 264.9 138 232 188 138 211 254 2 2 2 2 2 2 23734 21023 1229 20769 32277 41708;41709 41709 2 YGPFVADFADK Unmodified 1228.5764 0.57643921 875 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 0 6 0 1 67.046 67.046 3 0.0083169 20844 TMT1-5 63.694 40.089 38.004 65.777 49.073 44.236 49.495 52.954 36 65 51 44 51 51 1 1 1 1 1 1 8178.8 21024 875 20770 32278 41710 41710 1 YGPIADVSIVYDQQSR Unmodified 1809.8897 0.88972785 1465 P62995-3;P62995 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 0 5 0 1 64.99 64.99 3 1.3054E-15 19877 TMT1-4 118.19 113.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21025 1465 20771 32279 41711 41711 1 YGPIVDVYVPLDFYTR Unmodified 1915.972 0.97200092 282 O75494-5;O75494-4;O75494-6;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 0 0 0 7 0 1 84.19 84.19 3 0.00069339 27014 TMT1-6 67.605 44.125 15.855 21.975 21.751 14.693 21.553 22.837 15 22 22 15 22 22 1 1 1 1 1 1 10919 21026 282 20772 32280 41712 41712 1 YGPLSGVNVVYDQR Unmodified 1565.7838 0.78380622 1725 Q13595-2;Q13595-4;Q13595-3;Q13595 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 0 0 6 0 1 59.429 59.429 2 4.7618E-05 17877 TMT1-5 99.498 79.357 38.154 43.528 42.818 44.594 50.285 29.479 36 44 44 44 51 29 1 1 1 1 1 1 6519.3 21027 1725 20773 32281 41713 41713 1 YGPNELPSEEGK Unmodified 1318.6041 0.60411052 2344 Q93084-4;Q93084-2;Q93084-3;Q93084-7;Q93084;Q93084-6;Q93084-5 ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 0 3 0 1 46.311 46.311 3 4.3261E-05 13810 TMT1-2 102.62 59.077 185.22 238.01 227.06 196.45 225.62 264.33 175 239 232 196 233 254 2 2 2 2 2 2 14718 21028 2344 20774 32282 41714;41715 41714 2 YGPSLMPGGNK Unmodified 1119.5383 0.53827956 1260 P52209-2;P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 0 7.5 0.5 1 1 50.443 50.443 2;3 0.0016068 13738 TMT1-6 97.277 71.656 161.73 233.47 211.82 207.26 163.89 250.1 153 233 218 204 174 239 2 2 2 2 2 2 28200 21029 1260 20775 32283;32284 41716;41717 41716 2 YGQCWVFAGVFNTFLR Unmodified 1963.9403 0.94032364 393 P00488 F13A1 Coagulation factor XIII A chain yes yes 0 0 0 0 0 9 0 1 90.991 90.991 3 2.5821E-21 27869 TMT1-8 147.51 123.42 139.34 88.433 130.82 110.21 60.335 105.94 131 94 131 109 66 101 2 2 2 2 2 2 68431 21030 393 20776 32285 41718;41719 41719 2 YGQFSGLNPGGR Unmodified 1251.5996 0.59963426 1413 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 0 0 7 0 1 48.635 48.635 2 0.0012504 12984 TMT1-6 68.44 57.611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21031 1413 20777 32286 41720 41720 1 YGQHPNIITLK Unmodified 1282.7034 0.70337105 1256;1852 P51812;Q15349;Q9UK32-2;Q9UK32;Q15418-4;Q15418;Q15418-2;Q15418-3 RPS6KA3;RPS6KA2;RPS6KA6;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase alpha-1 no no 0 0 0 0 0 8 0 1 47.081 47.081 3 0.00014315 12458 TMT1-7 101.93 73.164 160.11 307.56 241.43 195.97 263.88 247.24 152 303 249 197 269 239 1 1 1 1 1 1 31249 21032 1256;1852 20778 32287 41721 41721 1 YGQISEVVVVK Unmodified 1219.6812 0.68123863 1745 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 0 6 0 1 58.81 58.81 2 7.3696E-08 17615 TMT1-5 154.24 94.891 92.013 131.28 113.68 78.401 120.38 136.21 87 131 116 80 123 131 1 1 1 1 1 1 18673 21033 1745 20779 32288 41722 41722 1 YGREDLDVLGLTFR Unmodified 1652.8522 0.85222014 1179 P49407-2;P49407 ARRB1 Beta-arrestin-1 yes no 0 0 0 0 1 6 0 1 66.319 66.319 3 0.00010073 20638 TMT1-5 89.232 32.438 131.39 174.06 132.66 124.69 155.93 166.11 124 174 138 124 160 160 2 2 2 2 2 2 32146 21034 1179 20780 32289 41723;41724 41724 2 YGSDIVPFSK Unmodified 1111.555 0.55497548 676 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 0 7 0 1 59.497 59.497 2 0.00012638 17249 TMT1-6 136.63 83.465 130.37 174.3 122.24 188.24 122.64 167.06 123 174 131 181 131 160 1 1 1 1 1 1 29461 21035 676 20781 32290 41725 41725 1 YGSIVDDER Unmodified 1052.4775 0.47745344 1723 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes yes 0 0 0 0 0 2 0 1 42.039 42.039 2 4.8809E-05 11785 TMT1-1 153.08 101.74 122.99 112.58 152.64 99.868 134.03 166.74 116 116 152 102 138 160 1 1 1 1 1 1 24204 21036 1723 20782 32291 41726 41726 1 YGSPGNVSK Unmodified 907.43995 0.43994572 352 O95373 IPO7 Importin-7 yes yes 0 0 0 0 0 6 0 1 36.365 36.365 2 0.022085 8750 TMT1-5 77.192 33.076 53.925 72.825 72.442 42.709 56.638 60.212 51 73 73 44 58 58 1 1 1 1 1 1 5276 21037 352 20783 32292 41727 41727 1 YGSQEHPIGDK Unmodified 1229.5677 0.56766543 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 5 1 1 1 33.409 33.409 3 4.3653E-05 7721 TMT1-3 107.12 70.005 290.65 333.21 281.03 277.82 260.97 344.33 274 336 291 274 273 330 1 1 1 1 1 1 30936 21038 1786 20784 32293;32294 41728;41729 41728 2 YGSSLEFTELLTLVNR Unmodified 1840.9571 0.95707914 1317 P55212;P55212-2 CASP6 Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11 yes no 0 0 0 0 0 7.5 0.5 1 1 86.131 86.131 3 5.8225E-06 27651 TMT1-7 70.197 55.209 15.779 29.32 28.226 29.484 28.202 22.647 15 29 29 29 29 22 1 1 1 1 1 1 4545 21039 1317 20785 32295;32296 41730;41731 41731 2 YGTFMAPDLFGSK Unmodified 1432.6697 0.66968766 1142 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes yes 0 0 0 0 0 8 0 1 73.409 73.409 3 0.0001184 22825 TMT1-7 69.716 50.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21040 1142 20786 32297 41732 41732 1 YGVAWEK Unmodified 851.41775 0.41775372 1794 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 0 7 0 1 50.995 50.995 2 0.0022225 13916 TMT1-6 91.041 45.323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21041 1794 20787 32298 41733 41733 1 YGVIIVGNPK Unmodified 1058.6124 0.61243078 2328 Q92900-2;Q92900 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 0 8 0 1 56.346 56.346 3 0.039721 16116 TMT1-7 47.198 23.641 77.215 101.63 101.07 62.994 107.78 97.128 73 102 102 65 109 94 1 1 1 1 1 1 5167.6 21042 2328 20788 32299 41734 41734 1 YGVNPGPIVGTTR Unmodified 1329.7041 0.70409934 1090;1089 P42166;P42167;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 6.5 0.5 1 1 48.258 48.258 2 1.9327E-21 13403 TMT1-5 188.6 149.28 215.01 314.02 206.11 220.95 267.9 310.02 203 312 218 218 276 298 3 3 3 3 3 3 30503 21043 1089;1090 20789 32300;32301 41735;41736;41737 41736 3 YGVQADR Unmodified 807.38752 0.38751622 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 0 3 0 1 29.255 29.255 2 0.0056394 7009 TMT1-2 133.81 83.773 146.75 150.24 95.326 118.61 132.92 174.23 138 152 102 116 138 167 1 1 1 1 1 1 42351 21044 1766 20790 32302 41738 41738 1 YGVQADRVDK Unmodified 1149.5778 0.57783619 1766 Q14247-3;Q14247;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 1 4 0 1 35.89 35.89 3 0.0041353 8704 TMT1-3 81.525 47.634 267.05 372.6 247.31 255.63 269.11 472.02 252 371 261 252 284 450 1 1 1 1 1 1 20408 21045 1766 20791 32303 41739 41739 1 YGVQFILDALR Unmodified 1293.7081 0.70812208 2061 Q6ZNJ1-2;Q6ZNJ1;Q6ZNJ1-3 NBEAL2 Neurobeachin-like protein 2 yes no 0 0 0 0 0 9 0 1 84.117 84.117 2 6.8697E-06 25130 TMT1-8 113.63 49.062 68.982 87.004 54.575 58.667 78.389 75.581 65 87 58 58 80 73 1 1 1 1 1 1 16085 21046 2061 20792 32304 41740 41740 1 YGVSGYPTLK Unmodified 1083.5601 0.56006086 955 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 0 6 2.92 1 1 2 53.062 53.062 2;3 1.3068E-05 14570 TMT1-6 153.05 139.99 1072 1692.2 1441.3 998.1 1408.4 1666.5 1015 1681 1472 1016 1445 1601 5 5 5 5 5 5 309530 21047 955 20793 32305;32306;32307;32308 41741;41742;41743;41744;41745 41742 5 YGVTTLVR Unmodified 907.51272 0.51271674 1660 Q12974;Q12974-4;Q12974-2 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 0 0 0 0 0 7 0 1 47.127 47.127 2 0.003721 12376 TMT1-6 130 0 122.49 192.12 170.32 130.19 150.88 214.22 116 191 174 131 157 205 1 1 1 1 1 1 18417 21048 1660 20794 32309 41746 41746 1 YGVVVCEADTGR Unmodified 1324.6082 0.60815004 3033 Q9Y5P6;Q9Y5P6-2 GMPPB Mannose-1-phosphate guanyltransferase beta yes no 0 0 0 0 0 3.5 0.5 1 1 45.655 45.655 2 5.8127E-07 13587 TMT1-2 120.65 91.926 115.49 168.17 103.37 87.352 83.887 90.348 109 167 109 87 87 87 2 2 2 2 2 2 15372 21049 3033 20795 32310;32311 41747;41748 41747 2 YGWWVGEMK Unmodified 1154.5219 0.52190122 289 O75563 SKAP2 Src kinase-associated phosphoprotein 2 yes yes 0 0 0 0 0 8 0 2 68.353 68.353 2 0.0011627 20888 TMT1-7 82.452 57.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21050 289 20796 32312;32313 41749;41750 41750 2 YGYEIPVDMLCK Unmodified 1486.6836 0.68362317 1361 P60900;P60900-2;P60900-3 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 0 6 0 1 70.819 70.819 3 0.00011051 22384 TMT1-5 97.911 66.95 53.6 125.89 82.015 96.427 75.884 98.039 51 123 87 94 80 94 1 1 1 1 1 1 17572 21051 1361 20797 32314 41751 41751 1 YGYIHLYDLETGTCIYMNR Unmodified 2381.082 0.08203843 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 6 0 1 67.549 67.549 3 1.2045E-11 21071 TMT1-5 91.457 82.193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21052 1540 20798 32315 41752 41752 1 YGYTHLSAGELLR Unmodified 1478.7518 0.75177781 953 P30085-3;P30085 CMPK1 UMP-CMP kinase yes no 0 0 0 0 0 7 1 1 1 50.568 50.568 3 1.4422E-08 13859 TMT1-7 124.12 87.672 199.38 313.38 307.95 220.55 373.15 321.94 189 312 312 225 377 312 2 2 2 2 2 2 52090 21053 953 20799 32316;32317 41753;41754 41754 2 YHDIPYIESEGP Unmodified 1418.6354 0.63541065 2523 Q9BSF0 C2orf88 Small membrane A-kinase anchor protein yes yes 0 0 0 0 0 3 0 1 56.841 56.841 2 6.9202E-05 17931 TMT1-2 107.69 101.03 54.192 64.934 34.196 37.471 49.55 60.414 51 65 37 37 51 58 2 2 2 2 2 2 23639 21054 2523 20800 32318 41755;41756 41755 2 YHDLECQLIQEFTSAQR Unmodified 2136.9899 0.9898526 71 O00471 EXOC5 Exocyst complex component 5 yes yes 0 0 0 0 0 5 0 1 71.084 71.084 3 0.038045 22328 TMT1-4 37.687 22.533 15.87 44.682 0 7.2543 21.089 46.302 15 43 0 7 22 44 1 1 0 1 1 1 5505.7 21055 71 20801 32319 41757 41757 1 YHEAWQK Unmodified 960.44537 0.44536545 763 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 0 6 0 1 36.147 36.147 3 0.0081245 8634 TMT1-5 85.359 45.735 160.7 269.27 174.29 200.04 202.21 179.71 152 266 185 196 208 174 1 1 1 1 1 1 8205 21056 763 20802 32320 41758 41758 1 YHEEFEK Unmodified 980.42396 0.42396131 1801 Q14847;Q14847-2;Q14847-3 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 0 3 0.816 1 1 1 36.38 36.38 3 0.0017258 8697 TMT1-3 114.6 88 1646.5 2746.4 1557.6 1833.1 1621.9 2830.9 1556 2710 1675 1790 1724 2699 6 6 6 6 6 6 255610 21057 1801 20803 32321;32322;32323 41759;41760;41761;41762;41763;41764 41763 6 YHEQLSTQSLIELFESFK Unmodified 2198.0895 0.089549874 1540 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 0 8.33 0.471 2 1 86.332 86.332 3;4 0.00041528 27731 TMT1-7 63.894 39.606 101.11 160.37 182.49 120.77 148.56 172.72 96 160 183 123 153 166 4 4 4 4 4 4 29357 21058 1540 20804 32324;32325;32326 41765;41766;41767;41768 41765 4 YHFFLYK Unmodified 1016.512 0.51198846 2013;1643 Q6IBS0;Q12792-4;Q12792;Q12792-3 TWF2;TWF1 Twinfilin-2;Twinfilin-1 no no 0 0 0 0 0 9 0 1 56.561 56.561 3 0.001592 14309 TMT1-8 119.7 72.503 439.03 925.99 629.35 436.01 684.21 753.33 417 908 653 445 698 725 2 2 2 2 2 2 84887 21059 2013;1643 20805 32327 41769;41770 41769 2 YHFLILLFSK Unmodified 1279.7329 0.73288027 1627 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 0 9 0 1 78.451 78.451 3 0.033017 22998 TMT1-8 43.77 22.868 30.685 44.158 35.207 21.119 44.035 29.657 29 44 36 22 44 29 1 1 1 1 1 1 2175.9 21060 1627 20806 32328 41771 41771 1 YHIDGAR Unmodified 830.4035 0.40350064 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 3 0 1 27.179 27.179 3 0.0097448 6268 TMT1-2 81.635 24.075 46.48 49.779 80.776 57.532 55.7 67.701 44 51 80 58 58 65 1 1 1 1 1 1 11653 21061 1669 20807 32329 41772 41772 1 YHIEVNR Unmodified 929.47191 0.47191456 1816 Q15029-2;Q15029-3;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 0 4 0 1 32.106 32.106 3 0.0018572 7160 TMT1-3 111.73 38.403 46.585 65.181 50.135 20.239 43.526 45.662 44 65 51 22 44 44 1 1 1 1 1 1 5475 21062 1816 20808 32330 41773 41773 1 YHLGCNCK Unmodified 1050.4375 0.43751966 1025 P35625 TIMP3 Metalloproteinase inhibitor 3 yes yes 0 0 0 0 0 7 0 1 32.851 32.851 3 0.0020515 6761 TMT1-6 66.799 33.003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21063 1025 20809 32331 41774 41774 1 YHLLLQELVK Unmodified 1254.7336 0.73360855 722;2899 Q9UKW4-2;Q9UKW4;Q9UKW4-4;P15498-2;P15498 VAV3;VAV1 Guanine nucleotide exchange factor VAV3;Proto-oncogene vav no no 0 0 0 0 0 8 0 1 64.114 64.114 3 0.00039926 19131 TMT1-7 100.57 82.301 169.53 201.36 191.28 176.44 182.59 203.73 160 203 196 175 189 196 2 2 2 2 2 2 19380 21064 2899;722 20810 32332 41775;41776 41775 2 YHLPYPEAIFEISYFK Unmodified 2016.0033 0.003301049 2147 Q8IXJ6-4;Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 SIRT2 NAD-dependent protein deacetylase sirtuin-2 yes no 0 0 0 0 0 8 0 1 78.775 78.775 3 0.0033592 24885 TMT1-7 57.148 53.18 37.915 65.529 64.271 43.457 42.752 37.156 36 65 65 44 44 36 1 1 1 1 1 1 6434 21065 2147 20811 32333 41777 41777 1 YHNVGLSK Unmodified 916.47667 0.47666558 1748 Q14103-3;Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 0 8 0 1 35.288 35.288 3 0.0040867 7789 TMT1-7 56.563 21.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21066 1748 20812 32334 41778 41778 1 YHPDKNPDNPEAADK Unmodified 1709.7645 0.76452734 2644 Q9H3Z4-2;Q9H3Z4 DNAJC5 DnaJ homolog subfamily C member 5 yes no 0 0 0 0 1 4 0 1 33.767 33.767 4 0.00017934 7854 TMT1-3 78.69 58.039 68.687 109.93 84.658 56.897 77.151 113.99 65 109 87 58 80 109 1 1 1 1 1 1 5953.4 21067 2644 20813 32335 41779 41779 1 YHPGYFGK Unmodified 967.4552 0.45520186 1131 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 0 8 0 1 40.792 40.792 3 0.0031038 9902 TMT1-7 91.906 69.265 422.7 568.67 429.66 471.2 608.08 455.95 399 568 450 465 617 444 2 2 2 2 2 2 61239 21068 1131 20814 32336 41780;41781 41780 2 YHPQALIYPLTVASK Unmodified 1699.9297 0.92974218 1096 P42345 MTOR Serine/threonine-protein kinase mTOR yes yes 0 0 0 0 0 9 0 1 60.082 60.082 3 1.1685E-05 15758 TMT1-8 80.632 61.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21069 1096 20815 32337 41782 41782 1 YHQGINAEIETR Unmodified 1429.695 0.69499121 651 P11277-2;P11277;P11277-3 SPTB Spectrin beta chain, erythrocytic yes no 0 0 0 0 0 3 0 1 35.286 35.286 3 0.002993 9423 TMT1-2 69.578 52.326 30.66 51.645 32.997 60.648 41.412 53.184 29 51 36 58 44 51 1 1 1 1 1 1 12169 21070 651 20816 32338 41783 41783 1 YHSDDYIK Unmodified 1039.4611 0.4610751 1717 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 0 4 0 1 36.967 36.967 3 0.00076167 9089 TMT1-3 128.69 44.474 153.72 209.74 135.59 178.25 204.89 343.8 145 209 145 174 215 328 1 1 1 1 1 1 14849 21071 1717 20817 32339 41784 41784 1 YHSLAPMYYR Unmodified 1299.607 0.60702783 1236;1371 P51148;P51148-2;P20339-2;P20339;P61020;P61020-2 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 0 0 0 0 0 7 0 1 43.259 43.259 3 0.00044494 10849 TMT1-6 99.815 91.302 99.755 122.77 81.988 95.995 98.938 97.381 94 123 87 94 102 94 1 1 1 1 1 1 15791 21072 1236;1371 20818 32340 41785 41785 1 YHTEIVFAR Unmodified 1134.5822 0.58219329 481 P05023-3;P05023-4;P05023 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 5.5 0.5 1 1 41.896 41.896 3 4.9534E-05 10856 TMT1-4 112.84 78.018 107.74 168 145.15 195.17 146.46 347.6 102 167 152 189 160 330 1 1 1 1 1 1 14607 21073 481 20819 32341;32342 41786;41787 41786 2 YHTSQSGDEMTSLSEYVSR Unmodified 2175.9379 0.93787661 561 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 0 3.5 0.5 1 1 50.306 50.306 3 2.159E-23 14330 TMT1-3 134.29 125 93.048 169.96 87.175 111.1 151.09 111.88 88 167 95 109 153 109 2 2 2 2 2 2 34848 21074 561 20820 32343;32344 41788;41789 41789 2 YIAFDFHK Unmodified 1039.5127 0.51271674 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 0 8 0 1 57.789 57.789 2 0.0045747 16678 TMT1-7 124.08 81.481 108.48 91.288 84.522 80.539 99.099 113.37 102 94 87 80 102 109 1 1 1 1 1 1 12263 21075 2744 20821 32345 41790 41790 1 YIAIASTTVETTDPEKEVEPALELLEPIDQK Unmodified 3441.7654 0.76542835 972 P60028;P31150 GDI1 Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 1 4.5 0.5 2 2 84.584 84.584 4;5 2.0011E-19 27429 TMT1-4 95.652 90.067 185.48 223.6 196.81 214.77 219.28 211.21 175 225 204 211 226 204 5 5 5 5 5 5 47823 21076 972 20822 32346;32347;32348;32349 41791;41792;41793;41794;41795 41793 5 YIAIVSTTVETK Unmodified 1323.7286 0.72858275 1217 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 0 7 0 1 62.137 62.137 3 0.0017864 18347 TMT1-6 74.76 44.429 260.62 331 279.73 337.72 393.16 374.67 246 332 292 331 403 362 1 1 1 1 1 1 35771 21077 1217 20823 32350 41796 41796 1 YIALDEWAGCFGIK Unmodified 1641.7861 0.78611441 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 8 0 1 82.238 82.238 3 1.0289E-07 26184 TMT1-7 112.43 95.148 170.36 110.86 127.96 140.71 132.67 151.85 160 117 131 138 138 146 2 2 2 2 2 2 29779 21078 590 20824 32351 41797;41798 41797 2 YIANTVELR Unmodified 1077.5819 0.58185893 479 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 0 5 0 1 49.3 49.3 2 0.0016712 13750 TMT1-4 115.7 67.783 167.76 414.46 307.71 263.5 298.62 302.75 160 405 319 263 307 292 1 1 1 1 1 1 49461 21079 479 20825 32352 41799 41799 1 YIAVEYVDDTQFLR Unmodified 1730.8516 0.85155143 960 P30511-2;P30511;P30511-3 HLA-F HLA class I histocompatibility antigen, alpha chain F yes no 0 0 0 0 0 4 0 1 72.729 72.729 3 0.0063371 23183 TMT1-3 57.679 45.319 15.899 22.099 14.149 15.147 21.532 22.838 15 22 15 15 22 22 1 1 1 1 1 1 2936.3 21080 960 20826 32353 41800 41800 1 YICENQDSISSK Unmodified 1442.6348 0.63475872 28 CON__P02768-1;P02768;P02768-2 ALB Serum albumin yes no 0 0 0 0 0 4.5 0.5 2 2 45.339 45.339 2;3;4 7.0665E-09 12124 TMT1-4 150.33 61.933 1537.3 2087.1 1528.6 1319.3 1663.2 2223.1 1451 2083 1590 1319 1721 2130 6 6 6 6 6 6 393770 + 21081 28 20827 32354;32355;32356;32357 41801;41802;41803;41804;41805;41806 41804 6 YICPHAPR Unmodified 1012.4913 0.49126979 351 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 0 6 0 1 31.346 31.346 3 0.0012131 6790 TMT1-5 107.67 69.946 107.94 207.42 77.571 80.228 137.61 88.815 102 203 87 80 138 87 1 1 1 1 1 1 11648 21082 351 20828 32358 41807 41807 1 YIDENQDR Unmodified 1051.4571 0.45705235 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 2 0 1 33.294 33.294 2 0.0061234 8273 TMT1-1 109.48 63.463 68.697 117.51 76.601 57.516 69.794 114.2 65 116 80 58 73 109 1 1 1 1 1 1 18726 21083 2434 20829 32359 41808 41808 1 YIDITRPEEVK Unmodified 1361.7191 0.7190807 1907 Q5IS59;Q16799 RTN1 Reticulon-1 yes no 0 0 0 0 1 5 0 1 50.512 50.512 3 0.020383 14240 TMT1-4 60.547 46.885 200.78 210.41 160.55 146.19 144.99 212.26 189 213 167 145 152 203 1 1 1 1 1 1 14066 21084 1907 20830 32360 41809 41809 1 YIDQEELNK Unmodified 1150.5506 0.55061839 545;561;1955 P08238;P07900;P07900-2;Q14568;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 0 3 1.07 1 1 2 3 49.082 49.082 2;3 8.2814E-09 13734 TMT1-3 172.23 116.22 2034.2 3100.1 2448.8 1952.2 2348.9 2640.6 1924 3081 2525 1960 2418 2540 8 8 8 8 8 8 687670 21085 561;545;1955 20831 32361;32362;32363;32364;32365;32366;32367 41810;41811;41812;41813;41814;41815;41816;41817;41818 41816 9 YIEDEDYYK Unmodified 1236.5186 0.51864956 1770 Q14289-2;Q14289 PTK2B Protein-tyrosine kinase 2-beta yes no 0 0 0 0 0 3 0 1 52.086 52.086 2 0.00015326 16084 TMT1-2 116.05 55.369 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21086 1770 20832 32368 41819 41819 1 YIEIYVQK Unmodified 1054.5699 0.56989727 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 7 0 1 60.421 60.421 2 0.0048485 17684 TMT1-6 122.13 81.182 160.37 308.29 196.9 198.69 318.58 204.11 152 303 208 198 320 200 1 1 1 1 1 1 66300 21087 1540 20833 32369 41820 41820 1 YIETDPANR Unmodified 1077.5091 0.50908792 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 0 2 0.816 1 1 1 38.55 38.55 2 1.8475E-13 10619 TMT1-2 182.73 138.92 1435.7 1605.2 2062.4 1388.9 1963.3 2101.6 1357 1632 2059 1417 2007 2024 6 6 6 6 6 6 316280 + 21088 506 20834 32370;32371;32372 41821;41822;41823;41824;41825;41826 41824 6 YIETDPANRDR Unmodified 1348.6371 0.63714198 506 P06396-2;P06396-4;P06396-3;P06396;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 1 3 0.816 1 1 1 33.098 33.098 3 3.1677E-09 8312 TMT1-1 163.84 133.4 699.42 1172 838.93 811.35 693.68 1285 662 1159 877 800 741 1224 5 5 5 5 5 5 195040 + 21089 506 20835 32373;32374;32375 41827;41828;41829;41830;41831 41827 5 YIETSELCGGAR Unmodified 1354.6187 0.61871473 68 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 0 4 0 1 47.109 47.109 2 3.2774E-13 13136 TMT1-3 167.93 144.56 138.77 149.46 173.87 106.14 140.01 197.48 131 152 174 109 145 189 1 1 1 1 1 1 28421 21090 68 20836 32376 41832 41832 1 YIFDLFYK Unmodified 1107.5641 0.56408361 1080 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 0 0 9 0 1 82.89 82.89 2 0.0073437 24684 TMT1-8 108.46 61.394 61.498 72.483 62.342 74.74 70.871 59.806 58 73 65 73 73 58 1 1 1 1 1 1 5157.6 21091 1080 20837 32377 41833 41833 1 YIGESAR Unmodified 794.39227 0.39226725 1437 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 0 3 0 1 32.185 32.185 2 0.043381 8257 TMT1-2 84.699 24.051 107.95 176.14 102.64 93.95 142.19 150.51 102 174 109 94 145 145 1 1 1 1 1 1 17393 21092 1437 20838 32378 41834 41834 1 YIHLENLLAR Unmodified 1240.6928 0.69280637 1923 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 0 0 0 0 0 8 0 1 58.996 58.996 3 0.012854 17098 TMT1-7 61.56 45.087 45.725 42.103 33.855 52.526 63.773 52.546 43 43 36 51 65 51 1 1 1 1 1 1 12104 21093 1923 20839 32379 41835 41835 1 YIIGIGK Unmodified 762.46398 0.46397563 817 P20701-3;P20701;P20701-2 ITGAL Integrin alpha-L yes no 0 0 0 0 0 9 0 1 57.563 57.563 2 0.0069739 14760 TMT1-8 106.84 68.466 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21094 817 20840 32380 41836 41836 1 YIIIGDTGVGK Unmodified 1134.6285 0.62847478 1370 P61019;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B yes no 0 0 0 0 0 7 0 1 61.475 61.475 2 1.5925E-11 18055 TMT1-6 169.65 114.94 199.89 283.47 248.83 179.19 202.51 259.66 189 283 254 181 210 249 1 1 1 1 1 1 27860 21095 1370 20841 32381 41837 41837 1 YIILLLGK Unmodified 931.61064 0.61063987 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 79.434 79.434 2 1.8861E-05 23315 TMT1-8 163.41 163.41 145.3 295.14 216.64 187.88 249.57 217.8 138 290 225 188 254 211 2 2 2 2 2 2 35038 21096 471 20842 32382 41838;41839 41838 2 YIKDYMK Unmodified 959.47864 0.47863942 687 P13693;P13693-2;Q9HAU6 TPT1;TPT1P8 Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8 yes no 0 0 0 0 1 8 0 1 47.49 47.49 3 0.028824 12585 TMT1-7 72.485 33.917 273.76 533.93 244.34 225.8 179.38 505.5 259 523 266 223 198 479 1 1 1 1 1 1 21033 21097 687 20843 32383 41840 41840 1 YILDYLR Unmodified 954.51747 0.51746776 2389 Q96CX2;Q68DU8 KCTD12;KCTD16 BTB/POZ domain-containing protein KCTD12;BTB/POZ domain-containing protein KCTD16 yes no 0 0 0 0 0 7 0 1 67.104 67.104 2 0.0098358 20218 TMT1-6 110.63 39.566 53.941 80.424 63.324 42.844 78.347 97.968 51 80 65 44 80 94 1 1 1 1 1 1 34750 21098 2389 20844 32384 41841 41841 1 YILSDSSPAPEFPLAYLTSENR Unmodified 2469.2064 0.20637055 870 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 0 6 0 1 83.004 83.004 3 0.0025051 27085 TMT1-5 46.982 35.682 15.904 22.111 13.422 31.456 28.368 15.181 15 22 15 30 29 15 1 1 1 1 1 1 6401.2 21099 870 20845 32385 41842 41842 1 YIMGYISK Unmodified 973.49429 0.49428948 44 O00160 MYO1F Unconventional myosin-If yes yes 0 0 0 0 0 9 0 1 60.749 60.749 2 0.010652 16016 TMT1-8 89.296 39.256 84.555 170.8 71.209 105 119.16 136.25 80 167 80 102 123 131 1 1 1 1 1 1 9170.1 21100 44 20846 32386 41843 41843 1 YINENLIVNTDELGR Unmodified 1761.8897 0.88972785 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 4 0 2 65.429 65.429 2;3 9.3848E-10 20156 TMT1-3 96.371 71.533 23.375 30.122 13.287 22.85 21.471 14.311 22 30 15 22 22 14 1 1 1 1 1 1 23892 21101 770 20847 32387;32388 41844;41845 41845 2 YIPPCLDSELTEFPLR Unmodified 1948.9604 0.96044996 590 P09486 SPARC SPARC yes yes 0 0 0 0 0 5.5 0.5 1 1 78.656 78.656 3 7.7575E-24 25282 TMT1-4 175.15 160.92 338.33 373.56 348 317.82 307.14 316.98 319 378 357 312 318 305 9 9 9 8 9 8 115880 21102 590 20848 32389;32390 41846;41847;41848;41849;41850;41851;41852;41853;41854 41847 9 YIQAACK Unmodified 852.41637 0.41637351 1540 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 0 6.5 0.5 1 1 40.271 40.271 2 0.0073314 9748 TMT1-6 129.16 52.568 410.11 432.19 497.36 326.92 451.82 447.62 387 440 499 334 461 432 2 2 2 2 2 2 50497 21103 1540 20849 32391;32392 41855;41856 41856 2 YIQELWR Unmodified 1006.5236 0.52361577 1389 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 0 7 0 1 59.947 59.947 2 0.021743 17417 TMT1-6 96.253 48.337 169.36 224.63 200.37 159.64 175.54 187.94 160 225 205 160 181 181 1 1 1 1 1 1 52989 21104 1389 20850 32393 41857 41857 1 YIQHTYR Unmodified 979.48756 0.48756462 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 0 3 2 1 1 27.846 27.846 3 0.0030985 5412 TMT1-4 100.74 71.366 64.455 85.565 95.272 70.51 75.222 121.51 61 86 96 71 79 116 2 2 2 2 2 2 35550 21105 1268 20851 32394;32395 41858;41859 41859 2 YIQNLQGLFALPFGR Unmodified 1735.941 0.94097556 1787 Q14669-4;Q14669;Q14669-2;Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 0 0 9 0 1 87.772 87.772 3 0.00038571 26578 TMT1-8 66.004 46.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21106 1787 20852 32396 41860 41860 1 YIQPWESEFIDSQR Unmodified 1796.837 0.836964 2028 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 0 5 0 1 68.766 68.766 3 0.0055483 21357 TMT1-4 42.52 22.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21107 2028 20853 32397 41861 41861 1 YISCAECLK Unmodified 1142.51 0.5100159 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 6 0 1 49.881 49.881 3 0.0025478 14062 TMT1-5 84.615 65.835 222.44 301.42 230.2 181.94 231.54 294 210 301 238 183 239 282 1 1 1 1 1 1 18235 21108 485 20854 32398 41862 41862 1 YISGSIHYSR Unmodified 1181.5829 0.58292157 739 P16278;P16278-3;P16278-2 GLB1 Beta-galactosidase yes no 0 0 0 0 0 9 0 1 37.692 37.692 3 0.0025771 7341 TMT1-8 71.524 36.079 61.625 72.838 40.599 52.266 56.199 60.224 58 73 44 51 58 58 1 1 1 1 1 1 5653.8 21109 739 20855 32399 41863 41863 1 YISIGSEAEK Unmodified 1095.5448 0.54480473 2882 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 0 0 0 5 0 1 50.56 50.56 2 0.00053743 14227 TMT1-4 83.883 49.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21110 2882 20856 32400 41864 41864 1 YISLIYTNYEAGK Unmodified 1533.7715 0.7715102 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 0 8 0 1 68.329 68.329 3 1.2386E-06 20800 TMT1-7 115.14 96.679 46.691 65.475 32.128 59.715 93.806 51.689 44 65 36 58 94 51 1 1 1 1 1 1 10274 21111 583 20857 32401 41865 41865 1 YISLIYTNYEAGKDDYVK Unmodified 2154.0521 0.052101735 583 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 1 7 0 3 67.004 67.004 3;4;5 2.7955E-30 20291 TMT1-6 170.91 144.92 609.23 872 562.72 649.29 712.91 789.82 575 867 598 637 736 760 4 4 4 4 4 4 268250 21112 583 20858 32402;32403;32404 41866;41867;41868;41869 41869 4 YISPDQLADLYK Unmodified 1424.7187 0.71874635 514 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 0 5.4 2.24 1 2 2 70.817 70.817 3 8.0288E-09 21704 TMT1-6 132.59 70.284 3630.9 6124 4217.4 3685.9 4461.2 5515 3436 6052 4406 3679 4608 5293 6 6 6 6 6 6 679110 21113 514 20859 32405;32406;32407;32408;32409 41870;41871;41872;41873;41874;41875;41876;41877 41876 8 YITDWQNVFR Unmodified 1340.6513 0.65133548 264 O75340-2;O75340 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 0 8 0 1 71.401 71.401 2 0.00044791 22005 TMT1-7 117.01 77.866 91.961 162.43 95.959 94.181 151.08 104.42 87 160 102 94 152 102 1 1 1 1 1 1 31168 21114 264 20860 32410 41878 41878 1 YITGDQLGALYQDFVR Unmodified 1857.9261 0.92611336 581 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 0 6.67 0.471 1 2 80.878 80.878 2;3 8.3615E-18 25652 TMT1-6 150.22 133.58 108.81 144.19 164.58 131.01 125.82 150.98 103 145 166 131 131 145 3 3 3 3 3 3 74251 21115 581 20861 32411;32412;32413 41879;41880;41881 41880 3 YIVPMLTVDGK Unmodified 1234.6631 0.66314572 705 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 0 8 0 1 70.131 70.131 2 4.8085E-06 21538 TMT1-7 98.044 61.351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21116 705 20862 32414 41882 41882 1 YIYDQCPAVAGYGPIEQLPDYNR Unmodified 2701.2483 0.24825214 979 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 0 4 0 1 70.147 70.147 3 1.1705E-17 22188 TMT1-3 108.4 105.93 38.44 20.58 14.133 15.015 28.574 31.165 36 22 15 15 29 30 1 1 1 1 1 1 12543 21117 979 20863 32415 41883 41883 1 YIYDSAFHPDTGEK Unmodified 1641.7311 0.73110195 2664 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 0 5 0 1 51.653 51.653 3 4.2203E-08 14641 TMT1-4 115.12 103.85 99.46 177 85.632 111.23 148.98 142.86 94 174 94 109 152 138 1 1 1 1 1 1 15733 21118 2664 20864 32416 41884 41884 1 YIYIMGIQER Unmodified 1284.6536 0.65364367 859 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 0 7.5 0.5 1 1 64.558 64.558 2 0.0055989 19326 TMT1-7 90.64 62.559 176.5 246.84 243.2 187.59 180.52 218.71 167 247 247 188 188 210 2 2 2 2 2 2 22778 21119 859 20865 32417;32418 41885;41886 41886 2 YKAEDEK Unmodified 881.41306 0.41306227 641 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 1 4.5 0.5 1 1 31.528 31.528 3 0.022909 6911 TMT1-3 76.679 24.197 2603.1 1751.3 2296.6 1899.3 2559.8 1230.7 2447 1847 2310 1907 2571 1223 2 2 2 2 2 2 254470 21120 641 20866 32419;32420 41887;41888 41887 2 YKAEDEVQR Unmodified 1136.5462 0.54620171 618 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 1 3 0.816 1 1 1 31.137 31.137 3 0.006528 6669 TMT1-3 78.513 51.914 1300.6 1889.5 1448.4 1178.3 1276.1 1897.3 1229 1881 1498 1179 1334 1814 3 3 3 3 3 3 171980 21121 618 20867 32421;32422;32423 41889;41890;41891 41891 3 YKDAIHFYNK Unmodified 1297.6455 0.64552182 986 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 1 8 0 1 46.125 46.125 4 0.0028645 12112 TMT1-7 80.763 52.902 671.33 1012.3 827.78 696.86 946.73 1136 635 1007 853 699 973 1091 1 1 1 1 1 1 92186 21122 986 20868 32424 41892 41892 1 YKDILPFDHSR Unmodified 1389.7041 0.70409934 1592 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes yes 0 0 0 0 1 7 0 1 49.631 49.631 4 0.0012423 13329 TMT1-6 86.243 68.73 107.87 144.63 142.18 123.2 147.11 181.29 102 145 145 123 152 174 1 1 1 1 1 1 26947 21123 1592 20869 32425 41893 41893 1 YKDLDEDELLGNLSETELK Unmodified 2223.0794 0.079438698 2788 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 1 4.25 0.433 3 1 69.447 69.447 3;4;5 3.2079E-30 21581 TMT1-4 142.98 107.65 520.88 714.03 758.18 467.67 556.81 857.17 493 716 762 477 581 819 5 5 5 4 5 5 96642 21124 2788 20870 32426;32427;32428;32429 41894;41895;41896;41897;41898 41898 5 YKEALLGR Unmodified 948.53927 0.53926584 1268 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 1 8 0 1 43.269 43.269 3 0.0084509 10890 TMT1-7 85.862 56.712 451.98 726.37 425.15 380.91 483.46 641.79 427 718 451 380 500 615 1 1 1 1 1 1 85286 21125 1268 20871 32430 41899 41899 1 YKEEYAVLISEAQAIK Unmodified 1853.9775 0.97748023 1763 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 1 7 0 1 70.025 70.025 3 0.00073786 21429 TMT1-6 72.583 48.296 30.502 43.65 66.358 26.924 43.512 37.134 29 44 65 29 44 36 1 1 1 1 1 1 6121.6 21126 1763 20872 32431 41900 41900 1 YKETDLLILFK Unmodified 1381.7857 0.7857037 498 P05455 SSB Lupus La protein yes yes 0 0 0 0 1 8 0 2 72.024 72.024 3;4 0.0005994 22255 TMT1-7 96.64 37.964 289.4 395.4 257.33 288.93 210.69 453.43 273 394 273 282 229 431 2 2 2 2 2 2 37835 21127 498 20873 32432;32433 41901;41902 41902 2 YKEVAELTR Unmodified 1107.5924 0.59242362 1546 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 1 6 0 1 42.592 42.592 3 0.016418 11205 TMT1-5 67.08 30.401 431.22 530.11 474.35 344.66 453.07 630.94 407 533 484 349 469 604 1 1 1 1 1 1 38508 21128 1546 20874 32434 41903 41903 1 YKGHTADLLDLSWSK Unmodified 1732.8784 0.87843489 1960 Q5JSH3-2;Q5JSH3;Q5JSH3-4;Q5JSH3-3 WDR44 WD repeat-containing protein 44 yes no 0 0 0 0 1 8 0 1 58.817 58.817 4 0.00027122 17055 TMT1-7 77.746 56.807 169.95 187.42 132.72 100.96 139.11 230.55 160 189 138 102 145 220 1 1 1 1 1 1 14020 21129 1960 20875 32435 41904 41904 1 YKGQHVPGSPFQFTVGPLGEGGAHK Unmodified 2594.303 0.30300532 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 8.5 0.5 1 1 53.478 53.478 5 2.3007E-22 12884 TMT1-8 104.38 78.78 646.62 947.05 887.08 452.36 857.79 854.97 612 945 894 477 868 825 3 3 3 3 3 3 141530 21130 831 20876 32436;32437 41905;41906;41907 41906 3 YKPAVNQIECHPYLTQEK Unmodified 2217.0888 0.088838367 716 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 1 7 0 1 47.525 47.525 4 3.514E-10 12570 TMT1-6 108.49 93.232 84.464 139.24 113.27 77.716 158.09 166.05 80 138 116 80 160 160 1 1 1 1 1 1 20303 21131 716 20877 32438 41908 41908 1 YKPESEELTAER Unmodified 1450.694 0.69398816 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 2.33 1.25 1 1 1 39.249 39.249 3 2.7102E-09 9883 TMT1-3 149.82 143.92 967.41 1476.2 1166.8 978.69 1101.7 1425.8 915 1467 1205 978 1143 1367 5 5 5 5 5 5 204920 21132 530 20878 32439;32440;32441 41909;41910;41911;41912;41913 41913 5 YKPLPQISK Unmodified 1072.6281 0.62808085 2744 Q9NTJ5;Q9NTJ5-2 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 0 0 0 0 1 9 0 1 47.922 47.922 4 0.033895 10940 TMT1-8 56.563 28.359 122.12 240.74 190.96 160.16 177.28 197.48 116 237 197 160 183 190 1 1 1 1 1 1 13425 21133 2744 20879 32442 41914 41914 1 YKQDVYLLPK Unmodified 1265.702 0.70197407 210 O43865-2;O43865;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 0 0 0 0 1 8 0 1 53.765 53.765 3 0.0045755 15110 TMT1-7 79.693 39.58 348.04 432.58 469.85 392.3 317.47 434.4 329 436 476 390 335 416 1 1 1 1 1 1 42151 21134 210 20880 32443 41915 41915 1 YKTQIDHYVGIAR Unmodified 1562.8205 0.82052608 341 O95197-3;O95197-4;O95197-7;O95197-2;O95197 RTN3 Reticulon-3 yes no 0 0 0 0 1 7 0 1 45.497 45.497 4 0.01877 11718 TMT1-6 52.265 31.839 214.85 277.97 263.22 177.68 237.31 345.01 203 279 267 181 246 330 1 1 1 1 1 1 26219 21135 341 20881 32444 41916 41916 1 YKVCNYGLTFTQK Unmodified 1620.797 0.79701344 2959 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 1 9 0 1 54.195 54.195 3 0.00014487 13455 TMT1-8 84.468 58.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21136 2959 20882 32445 41917 41917 1 YKVEGFPTIYFAPSGDK Unmodified 1917.9513 0.95126548 686 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 1 8 0 1 66.474 66.474 4 0.014195 20072 TMT1-7 48.112 29.974 99.544 138.38 104.19 110.98 103.45 159.08 94 138 109 109 109 152 1 1 1 1 1 1 24215 21137 686 20883 32446 41918 41918 1 YLAEFATGNDR Unmodified 1255.5833 0.5833155 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 0 4.5 0.5 1 1 54.483 54.483 2 3.2606E-23 15759 TMT1-4 195.36 146 289.47 570.8 457.48 320.44 515.81 420.21 275 562 469 327 521 408 2 2 2 2 2 2 83632 21138 1422 20884 32447;32448 41919;41920 41920 2 YLAEFATGNDRK Unmodified 1383.6783 0.67827852 1422 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 1 6 0 1 48.596 48.596 3 0.00020796 13656 TMT1-5 96.64 70.229 242.37 305.22 304.01 193.8 180.95 380.73 229 307 307 197 194 362 1 1 1 1 1 1 142480 21139 1422 20885 32449 41921 41921 1 YLAEKYEWDVAEAR Unmodified 1741.8312 0.83115034 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 1 5 0 1 58.891 58.891 3 0.00027562 17439 TMT1-4 81.632 59.477 99.231 173.12 127.38 77.889 104.17 182.51 94 171 131 80 109 174 1 1 1 1 1 1 11755 21140 685 20886 32450 41922 41922 1 YLAEVAAGDDK Unmodified 1150.5506 0.55061839 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 0 3.5 0.5 2 2 53.286 53.286 2;3 7.5635E-17 15578 TMT1-3 187.64 108.05 575 1078.1 911.2 738.23 923.85 1137.7 546 1064 935 741 953 1092 5 5 5 5 5 5 398010 21141 1471 20887 32451;32452;32453;32454 41923;41924;41925;41926;41927 41926 5 YLAEVAAGDDKK Unmodified 1278.6456 0.6455814 1471 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 1 4.6 1.85 1 2 2 48.377 48.377 3;4 4.5358E-09 13373 TMT1-5 145.29 115.95 8364.2 11389 10694 8051.9 9824.3 11851 7908 11402 10886 8119 10135 11380 10 10 10 10 10 10 1168800 21142 1471 20888 32455;32456;32457;32458;32459 41928;41929;41930;41931;41932;41933;41934;41935;41936;41937 41936 10 YLAEVACGDDR Unmodified 1267.5503 0.55030081 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 2.5 0.5 1 1 48.609 48.609 2 5.6532E-07 14497 TMT1-1 148.32 111.13 315.44 432.38 358.81 265.7 368.4 399.9 298 432 368 269 377 385 4 4 4 4 4 4 79304 21143 909 20889 32460;32461 41938;41939;41940;41941 41939 4 YLAEVACGDDRK Unmodified 1395.6453 0.64526383 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 1 4 0 1 44.523 44.523 3 1.4013E-08 12112 TMT1-3 131.17 98.115 567.58 668.19 702.21 541.85 695.14 780.73 536 675 711 546 714 751 1 1 1 1 1 1 107880 21144 909 20890 32462 41942 41942 1 YLAEVASGEK Unmodified 1065.5342 0.53424004 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 0 3 2 1 1 51.765 51.765 3 0.0019923 14652 TMT1-4 83.883 66.787 513.1 524.56 603.04 465.99 742.63 596.02 484 535 608 472 750 579 3 3 3 3 3 3 103670 21145 1588 20891 32463;32464 41943;41944;41945 41945 3 YLAEVASGEKK Unmodified 1193.6292 0.62920306 1588 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 1 6 0 2 46.654 46.654 3;4 8.6619E-05 12772 TMT1-5 104.59 71.535 819.7 1286.4 1085.5 889.63 980.89 1162.7 776 1278 1115 890 1015 1117 3 3 3 3 3 3 56028 21146 1588 20892 32465;32466 41946;41947;41948 41946 3 YLAEVATGEK Unmodified 1079.5499 0.5498901 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 0 4.5 0.5 1 1 52.796 52.796 2 4.8466E-14 15007 TMT1-4 182.65 93.704 414.63 634.7 649.21 433.99 612.38 685.02 393 633 655 443 627 659 3 3 3 3 3 3 101790 21147 1411 20893 32467;32468 41949;41950;41951 41950 3 YLAEVATGEKR Unmodified 1235.651 0.65100113 1411 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 1 6 0 1 44.452 44.452 3 5.7827E-17 11961 TMT1-5 180.66 139.78 464.75 551.26 410.31 389.8 290.37 709.13 438 554 428 384 318 673 1 1 1 1 1 1 32759 21148 1411 20894 32469 41952 41952 1 YLAIAPPIIK Unmodified 1097.6849 0.68486744 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 9 0 1 69.424 69.424 2 8.5744E-05 19419 TMT1-8 132.69 98.891 77.213 92.991 108.78 71.572 92.198 82.649 73 94 109 73 94 80 1 1 1 1 1 1 13751 21149 1888 20895 32470 41953 41953 1 YLAVESPFLK Unmodified 1165.6383 0.63831118 1219 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 0 8 0 1 68.601 68.601 3 0.00065612 20894 TMT1-7 96.331 64.959 84.871 101.52 76.742 74.054 61.72 83.519 80 102 80 73 65 80 1 1 1 1 1 1 13743 21150 1219 20896 32471 41954 41954 1 YLCDAYQCADVIWQYGLLK Unmodified 2378.1075 0.1075249 205 O43813 LANCL1 LanC-like protein 1 yes yes 0 0 0 0 0 8 0 1 87.827 87.827 3 3.8389E-05 28293 TMT1-7 71.085 56.924 30.888 20.979 20.703 37.862 13.415 15.607 29 22 22 36 15 15 1 1 1 1 1 1 1870.7 21151 205 20897 32472 41955 41955 1 YLDEDTIYHLQPSGR Unmodified 1805.8584 0.85842773 973 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 0 4 0 1 55.091 55.091 3 4.2126E-06 16295 TMT1-3 100.13 85.563 77.249 116.84 82.446 96.268 82.927 106.37 73 116 87 94 87 102 1 1 1 1 1 1 24294 21152 973 20898 32473 41956 41956 1 YLDEFLLNK Unmodified 1153.6019 0.60192568 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 0 6 0 1 73.06 73.06 3 0.013385 23209 TMT1-5 63.159 35.417 39.204 58.501 33.952 29.02 34.746 45.913 37 58 36 29 36 44 1 1 1 1 1 1 4644.1 21153 1707 20899 32474 41957 41957 1 YLDELMK Unmodified 910.447 0.44700494 1139 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 0 5 0 1 61.949 61.949 2 0.004601 18682 TMT1-4 82.671 25.494 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21154 1139 20900 32475 41958 41958 1 YLDFVFAVK Unmodified 1100.5906 0.59063271 680 P13473;P13473-2;P13473-3 LAMP2 Lysosome-associated membrane glycoprotein 2 yes no 0 0 0 0 0 9 0 1 79.246 79.246 2 0.00019391 23244 TMT1-8 143.01 87.64 122.74 205.78 115.59 101.68 155.17 188.52 116 203 123 102 159 181 2 2 2 2 2 2 26550 21155 680 20901 32476 41959;41960 41959 2 YLDPEYIDR Unmodified 1182.5557 0.55570376 313 O75935;O75935-3;O75935-2 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 0 3 0 1 55.193 55.193 2 0.0052577 17247 TMT1-2 97.635 68.548 131.21 213.51 128.52 164.33 153.59 181.1 124 211 138 160 160 174 2 2 2 2 2 2 24814 21156 313 20902 32477 41961;41962 41961 2 YLDQMEDLYEDFHIVK Unmodified 2056.9452 0.94519382 193 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 0 5 0 1 79.022 79.022 3 3.7332E-05 25449 TMT1-4 79.346 53.48 22.979 66.796 48.746 51.918 48.886 60.433 22 65 51 51 51 58 1 1 1 1 1 1 12529 21157 193 20903 32478 41963 41963 1 YLDSTFTK Unmodified 973.47566 0.47566253 666;31 P12259;CON__Q28107 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain no no 0 0 0 0 0 6.5 0.5 1 1 53.677 53.677 2 0.0040855 15586 TMT1-5 127.56 48.449 268.92 323.31 515.15 381.66 390.63 663.63 255 329 511 384 412 633 2 2 2 2 2 2 49288 + 21158 666;31 20904 32479;32480 41964;41965 41964 2 YLECSALQQDGVK Unmodified 1509.7133 0.71334339 1522 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 0 5 0 1 53.873 53.873 3 0.00026415 15514 TMT1-4 85.845 62.24 263.49 254.07 223.75 191.73 254.65 247.51 248 259 230 192 260 239 1 1 1 1 1 1 52790 21159 1522 20905 32481 41966 41966 1 YLECSALTQR Unmodified 1239.5918 0.59177169 717;1466 P15153;P63000;P63000-2;P60763 RAC2;RAC1;RAC3 Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 no no 0 0 0 0 0 5.5 0.5 1 1 46.927 46.927 2 1.5521E-10 12796 TMT1-4 179.36 140.1 452.27 916.59 756.24 659.16 621.3 916.09 430 902 779 655 653 876 3 3 3 3 3 3 199530 21160 717;1466 20906 32482;32483 41967;41968;41969 41967 3 YLEEIATQMR Unmodified 1252.6122 0.61217279 1559 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 0 5 0 1 61.926 61.926 3 0.0010226 18672 TMT1-4 63.32 46.482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21161 1559 20907 32484 41970 41970 1 YLEELPEK Unmodified 1019.5175 0.51752734 591 P09488;P09488-2 GSTM1 Glutathione S-transferase Mu 1 no no 0 0 0 0 0 4 0 1 55.297 55.297 2 0.0061428 16353 TMT1-3 109.21 54.806 161.69 172.73 90.043 205.22 251.6 196.43 152 174 102 197 256 191 1 1 1 1 1 1 23896 21162 591 20908 32485 41971 41971 1 YLEESNFVHR Unmodified 1292.6149 0.61494998 1115 P43405-2;P43405 SYK Tyrosine-protein kinase SYK yes no 0 0 0 0 0 4 0 1 43.831 43.831 3 4.8996E-07 11792 TMT1-3 158.47 125.24 91.928 131.04 128.19 117.31 97.958 97.409 87 131 131 116 102 94 1 1 1 1 1 1 28812 21163 1115 20909 32486 41972 41972 1 YLELLGYR Unmodified 1025.5546 0.55458155 336 O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 0 7 0 1 66.947 66.947 2 0.005579 20168 TMT1-6 116.88 94.054 106.62 222.98 106.39 141.16 177.45 156.97 101 218 117 138 181 152 2 2 2 2 2 2 27495 21164 336 20910 32487 41973;41974 41973 2 YLENQTFR Unmodified 1069.5193 0.51925868 39 O00139-2;O00139-1;O00139-5;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 0 5 0 1 43.993 43.993 2 0.0054545 11593 TMT1-4 117.81 72.499 139.08 135.19 135.33 116.22 133.03 174.23 131 138 138 116 138 167 1 1 1 1 1 1 23504 21165 39 20911 32488 41975 41975 1 YLENYDAIR Unmodified 1155.556 0.55603811 721 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 0 3.5 0.5 1 1 50.827 50.827 2 0.0052894 15611 TMT1-2 97.565 62.21 122.71 143.09 174.38 105.11 193.2 203.42 116 145 174 109 196 196 2 2 2 2 2 2 24362 21166 721 20912 32489;32490 41976;41977 41976 2 YLESLVQTQQQLIK Unmodified 1689.9301 0.93013611 235 O60749-2;O60749 SNX2 Sorting nexin-2 yes no 0 0 0 0 0 7.5 0.5 1 1 71.566 71.566 3 1.4795E-05 22078 TMT1-7 96.464 70.029 146.21 188.66 154.21 153.76 169.54 157.19 138 189 160 152 174 152 2 2 2 2 2 2 25727 21167 235 20913 32491;32492 41978;41979 41979 2 YLETLLYSQQQLAK Unmodified 1696.9036 0.903587 1726 Q13596-2;Q13596 SNX1 Sorting nexin-1 yes no 0 0 0 0 0 8 0 1 73.296 73.296 3 9.5084E-06 22781 TMT1-7 80.3 54.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21168 1726 20914 32493 41980 41980 1 YLETPGDENEHAHFQK Unmodified 1913.8544 0.85440498 482 Q5IS80;P05067-7;P05067-11;P05067-8;P05067-9;P05067;P05067-3;P05067-4;P05067-5;P05067-6;P05067-10 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 0 4 0 1 41.346 41.346 4 4.9475E-16 10839 TMT1-3 133.66 131.06 191.98 343.33 264.63 230.64 380.69 271.63 182 339 274 232 383 265 2 2 2 2 2 2 25430 21169 482 20915 32494 41981;41982 41981 2 YLEVVLNTLQQASQAQVDK Unmodified 2146.127 0.12699801 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 0 8.5 0.5 1 1 89.93 89.93 3;4 2.2035E-12 27318 TMT1-8 105.38 86.054 116.67 113.34 132.65 62.496 92.322 91.174 110 116 132 66 94 88 3 3 3 3 3 3 9128.5 21170 1803 20916 32495;32496 41983;41984;41985 41984 3 YLFDLLDELAEK Unmodified 1467.7497 0.74971212 2912 Q9ULL4;Q9ULL4-2 PLXNB3 Plexin-B3 yes no 0 0 0 0 0 6 0 1 100.63 100.63 3 0.02047 33391 TMT1-5 51.841 37.155 0 0 7.574 0 0 15.99 0 0 7 0 0 15 0 0 1 0 0 1 526.31 21171 2912 20917 32497 41986 41986 1 YLFLGDYVDR Unmodified 1259.6186 0.61863837 1618;741 P16298-2;P16298-3;P16298;P16298-4;P48454-2;P48454;P48454-3;Q08209-3;Q08209-2;Q08209;Q08209-5 PPP3CB;PPP3CC;PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform no no 0 0 0 0 0 6 0 1 70.047 70.047 2 0.000524 22052 TMT1-5 84.213 47.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21172 741;1618 20918 32498 41987 41987 1 YLFPGECQYVLVQDYCGSNPGTFR Unmodified 2869.284 0.28398571 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 6.5 0.5 1 1 75.903 75.903 3 6.2824E-10 23749 TMT1-6 88.627 86.219 39.157 58.371 41.907 44.93 35.318 38.434 37 58 44 44 37 37 2 2 2 2 2 2 25926 21173 471 20919 32499;32500 41988;41989 41989 2 YLFTGLK Unmodified 840.47454 0.47454032 1298 P54578-2;P54578;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 0 9 0 1 63.277 63.277 2 0.01537 17072 TMT1-8 97.602 39.05 370.98 454.84 382.55 279.2 447.43 456.27 350 457 392 284 455 440 2 2 2 2 2 2 38478 21174 1298 20920 32501 41990;41991 41991 2 YLGDGPK Unmodified 748.37555 0.37555455 1415 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 0 5 0 1 41.611 41.611 2 0.010436 10662 TMT1-4 108.09 62.774 209.11 187.52 223.06 157.25 230.69 230.07 197 193 224 160 235 222 1 1 1 1 1 1 13660 21175 1415 20921 32502 41992 41992 1 YLGEEYVK Unmodified 999.49131 0.49131259 451 P02787 TF Serotransferrin yes yes 0 0 0 0 0 5 0 1 51.557 51.557 2 0.0025466 14590 TMT1-4 136.16 79.052 232.15 362.6 350.16 174.65 239.24 292.72 220 361 352 183 246 281 1 1 1 1 1 1 34062 21176 451 20922 32503 41993 41993 1 YLGGTDDTVK Unmodified 1067.5135 0.5135046 853 P23141-3;P23141;P23141-2 CES1 Liver carboxylesterase 1 yes no 0 0 0 0 0 4 0 1 45.98 45.98 2 0.002845 12745 TMT1-3 98.055 6.2012 122.32 227.28 167.87 137.96 152.57 246.16 116 224 174 138 160 235 1 1 1 1 1 1 52361 21177 853 20923 32504 41994 41994 1 YLGHVEVDESR Unmodified 1302.6204 0.62042929 1199 P49757-8;P49757-7;P49757-6;P49757-5;P49757-4;P49757-2;P49757-3;P49757 NUMB Protein numb homolog yes no 0 0 0 0 0 3 0 1 38.868 38.868 3 0.0034429 10839 TMT1-2 73.435 53.228 123.33 137.28 74.119 80.434 137.6 88.815 116 138 80 80 138 87 1 1 1 1 1 1 19047 21178 1199 20924 32505 41995 41995 1 YLGLPGSLK Unmodified 946.54877 0.54876789 1736 Q13724-2;Q13724 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 0 9 0 1 61.403 61.403 2 0.011575 16278 TMT1-8 76.679 48.505 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21179 1736 20925 32506 41996 41996 1 YLGPACDLTLFDFK Unmodified 1658.8014 0.80143012 2883 Q9UIS9-4;Q9UIS9-11;Q9UIS9-8;Q9UIS9-7;Q9UIS9-6;Q9UIS9-5;Q9UIS9-10;Q9UIS9-2;Q9UIS9;Q9UIS9-9;Q9UIS9-12 MBD1 Methyl-CpG-binding domain protein 1 yes no 0 0 0 0 0 7 0 1 82.632 82.632 3 0.0034659 26340 TMT1-6 46.282 20.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21180 2883 20926 32507 41997 41997 1 YLGQDYEQLR Unmodified 1283.6146 0.61461563 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 3.33 0.471 2 1 50.562 50.562 2;3 5.0316E-21 15482 TMT1-2 202.2 141.29 491.93 658.69 620.67 450.62 632.14 727.1 465 660 631 457 648 699 4 4 4 4 4 4 217370 21181 536 20927 32508;32509;32510 41998;41999;42000;42001 41998 4 YLGVTLSPR Unmodified 1004.5655 0.56548059 1067 P40197 GP5 Platelet glycoprotein V yes yes 0 0 0 0 0 8 0 1 53.826 53.826 2 3.7554E-14 15162 TMT1-7 190.51 171.74 469.44 648.47 622.56 521.71 681.75 740.6 444 649 635 523 699 713 2 2 2 2 2 2 147760 21182 1067 20928 32511 42002;42003 42003 2 YLGYLEQLLR Unmodified 1266.6972 0.69722304 26 CON__P02662 yes yes 0 0 0 0 0 8 0 1 82.943 82.943 2 0.00018291 26464 TMT1-7 130.66 79.589 217.75 139.42 74.477 58.834 64.53 52.525 204 146 80 59 66 51 2 2 2 2 2 2 17157 + 21183 26 20929 32512 42004;42005 42004 2 YLHDESGLNR Unmodified 1202.568 0.56799978 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 0 3 0 1 33.703 33.703 3 3.0517E-21 8797 TMT1-2 196.07 141.63 91.194 230.46 167.18 152.67 186.05 165.25 87 225 174 152 190 160 1 1 1 1 1 1 31725 21184 1812 20930 32513 42006 42006 1 YLHDESGLNRR Unmodified 1358.6691 0.66911081 1812 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 1 4 0 1 29.021 29.021 4 0.0011229 6050 TMT1-3 83.862 44.24 54.091 57.098 57.841 27.304 50.274 52.931 51 58 58 29 51 51 1 1 1 1 1 1 11230 21185 1812 20931 32514 42007 42007 1 YLHDLGIVHR Unmodified 1221.6618 0.66184059 1746 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes yes 0 0 0 0 0 6 0 1 42.771 42.771 3 6.0943E-05 11279 TMT1-5 123.6 81.944 108.26 99.303 115.15 86.531 90.191 121.08 102 102 116 87 94 116 1 1 1 1 1 1 8775.9 21186 1746 20932 32515 42008 42008 1 YLHPPPHLK Unmodified 1100.6131 0.61309948 2724 Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;Q9NUK0-4;Q9NUK0-3;Q9NUK0-2;Q9NUK0 MBNL1;MBNL3 Muscleblind-like protein 1;Muscleblind-like protein 3 yes no 0 0 0 0 0 8 0 1 37.488 37.488 3 0.017269 8602 TMT1-7 59.8 22.078 77.676 62.981 56.329 50.654 92.097 113.57 73 65 58 51 94 109 1 1 1 1 1 1 6163.7 21187 2724 20933 32516 42009 42009 1 YLHVGYIVPPAPEK Unmodified 1581.8555 0.8555146 235 O60749-2;O60749 SNX2 Sorting nexin-2 yes no 0 0 0 0 0 7.67 0.471 1 2 56.944 56.944 3;4 4.2397E-05 16228 TMT1-6 70.563 44.089 77.344 124.66 59.855 58.504 70.298 98.198 73 123 65 58 73 94 1 1 1 1 1 1 5604.7 21188 235 20934 32517;32518;32519 42010;42011;42012 42010 3 YLIANATNPESK Unmodified 1319.6721 0.67213051 909 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 0 6.5 0.5 1 1 51.318 51.318 2;3 1.8366E-55 14078 TMT1-6 232.46 165.07 253.37 310.65 253.52 201.23 294.7 286.87 239 312 261 203 300 277 2 2 2 2 2 2 43241 21189 909 20935 32520;32521 42013;42014 42014 2 YLIATSEQPIAALHR Unmodified 1681.9152 0.91515474 1186 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 0 7 0 1 55.679 55.679 3 1.1701E-05 15755 TMT1-6 92.295 66.766 129.92 149.31 218.9 165.23 225.96 204.62 123 152 218 167 230 198 1 1 1 1 1 1 25710 21190 1186 20936 32522 42015 42015 1 YLIEIAK Unmodified 848.50076 0.50075507 1292 P53990-2;P53990-3;P53990;P53990-4;P53990-5;P53990-6 IST1 IST1 homolog yes no 0 0 0 0 0 7 0 1 61.339 61.339 2 0.007763 18042 TMT1-6 123.96 38.109 308.12 442.05 318.94 274.04 400.33 403.25 291 440 332 275 408 389 1 1 1 1 1 1 50664 21191 1292 20937 32523 42016 42016 1 YLIPNATQPESK Unmodified 1359.7034 0.70343063 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 5 2.35 1 2 1 52.336 52.336 2;3 7.6609E-12 14518 TMT1-6 136.48 84.748 329.59 509.86 440.29 298.06 539.88 480.28 312 507 449 306 545 465 2 2 2 2 2 2 191500 21192 984 20938 32524;32525;32526;32527 42017;42018;42019;42020 42020 4 YLIYVDESR Unmodified 1156.5764 0.57643921 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 5 0 1 57.1 57.1 2 0.00028927 16786 TMT1-4 141.93 127.17 122.67 209.91 123.69 108.53 171.88 149.67 116 207 131 109 174 145 1 1 1 1 1 1 33300 21193 485 20939 32528 42021 42021 1 YLKDHEK Unmodified 931.47633 0.47633123 2019 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 1 6 0 1 31.549 31.549 4 0.027229 6788 TMT1-5 65.06 0.96947 92.108 131.55 97.381 103.85 97.221 136.87 87 131 102 102 102 131 1 1 1 1 1 1 11076 21194 2019 20940 32529 42022 42022 1 YLKPILTHSGPPLTTTLPEWCGPISR Unmodified 2933.5473 0.54733469 2138 Q8IVB4 SLC9A9 Sodium/hydrogen exchanger 9 yes yes 0 0 0 0 1 9 0 1 67.33 67.33 4 4.424E-08 18621 TMT1-8 63.893 48.578 38.324 27.813 27.463 46.092 19.303 46.353 36 29 29 44 22 44 1 1 1 1 1 1 8143.6 21195 2138 20941 32530 42023 42023 1 YLLEQDFPGMR Unmodified 1367.6544 0.65437195 2802;2622 Q9NZN3;Q9NZN3-2;Q9H223 EHD3;EHD4 EH domain-containing protein 3;EH domain-containing protein 4 no no 0 0 0 0 0 5.5 0.5 1 1 66.687 66.687 2 2.0483E-06 20727 TMT1-5 134.68 124.15 170.12 171.7 117.38 101.99 132.87 197.68 160 174 123 102 138 189 3 3 3 3 3 3 23847 21196 2802;2622 20942 32531;32532 42024;42025;42026 42026 3 YLLLEETEK Unmodified 1136.5965 0.59650595 167 O43312-4;O43312;O43312-5 MTSS1 Metastasis suppressor protein 1 yes no 0 0 0 0 0 5 0 1 62.036 62.036 2 0.00041815 18717 TMT1-4 93.178 54.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21197 167 20943 32533 42027 42027 1 YLLLNPK Unmodified 859.51674 0.51673948 107 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 0 9 0 1 59.285 59.285 2 0.0055855 15442 TMT1-8 96.048 9.1131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21198 107 20944 32534 42028 42028 1 YLLPEVTVLDYGKK Unmodified 1636.9076 0.90760975 133 O15194-2;O15194 CTDSPL CTD small phosphatase-like protein yes no 0 0 0 0 1 8 0 1 69.203 69.203 3 0.0011596 21172 TMT1-7 54.898 46.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21199 133 20945 32535 42029 42029 1 YLLPLSALGTVAGAAVLLK Unmodified 1869.1339 0.13392129 2203 Q8NBN7 RDH13 Retinol dehydrogenase 13 yes yes 0 0 0 0 0 9 0 1 97.511 97.511 3 7.8299E-06 30049 TMT1-8 69.069 45.932 30.623 59.097 32.917 52.419 72.41 44.838 29 58 36 51 73 44 2 2 2 2 2 2 2727.4 21200 2203 20946 32536 42030;42031 42030 2 YLLQNTALEIFMANR Unmodified 1795.9291 0.92909025 1229 P50851-2;P50851 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 0 0 0 0 0 9 0 1 84.337 84.337 3 3.4897E-16 25124 TMT1-8 123.36 88.643 30.695 51.74 27.157 21.595 44.27 22.189 29 51 29 22 44 22 1 1 1 1 1 1 11528 21201 1229 20947 32537 42032 42032 1 YLLQYQEPIPCEQLVTALCDIK Unmodified 2693.3445 0.34446071 893 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 0 7 0 2 87.268 87.268 3;4 2.4132E-17 28030 TMT1-6 105.32 85.946 132.8 120.98 119.47 78.987 128.95 129.57 125 124 121 81 131 125 3 3 3 3 3 3 36334 21202 893 20948 32538;32539 42033;42034;42035 42033 3 YLLRPLGPHGLLSK Unmodified 1562.9297 0.9296826 2951 Q9Y251-2;Q9Y251;Q9Y251-3 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes no 0 0 0 0 1 9 0 1 56.132 56.132 4 1.5446E-06 14152 TMT1-8 102.73 66.706 295.09 417.68 365.29 336.64 353.6 370.47 279 417 376 334 365 357 2 2 2 2 2 2 26128 21203 2951 20949 32540 42036;42037 42036 2 YLLSAVLTGHR Unmodified 1228.6928 0.69280637 3051 Q9Y6C2;Q9Y6C2-2 EMILIN1 EMILIN-1 yes no 0 0 0 0 0 9 0 1 59.886 59.886 3 4.4915E-05 15740 TMT1-8 99.174 82.971 38.072 50.855 50.361 35.413 49.645 60.411 36 51 51 36 51 58 1 1 1 1 1 1 23687 21204 3051 20950 32541 42038 42038 1 YLLSQSSPAPLTAAEEELR Unmodified 2074.0582 0.058249746 1643 Q12792-4;Q12792;Q12792-3 TWF1 Twinfilin-1 yes no 0 0 0 0 0 5 0 1 69.732 69.732 3 8.2773E-10 21756 TMT1-4 97.713 79.575 30.621 59.092 33.208 45.887 11.983 46.562 29 58 36 44 15 44 1 1 1 1 1 1 6181.1 21205 1643 20951 32542 42039 42039 1 YLLTMDK Unmodified 882.45209 0.45209032 2847 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 0 7 0 1 58.75 58.75 2 0.0064134 16982 TMT1-6 79.469 33.098 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21206 2847 20952 32543 42040 42040 1 YLMEEDEDAYKK Unmodified 1532.6705 0.67047553 1132 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 1 4 0 1 50.59 50.59 3 0.00027761 14538 TMT1-3 93.623 76.422 217.32 335.92 159.97 206.81 294.23 354.04 205 332 176 203 302 340 1 1 1 1 1 1 33203 21207 1132 20953 32544 42041 42041 1 YLNQDYEALR Unmodified 1283.6146 0.61461563 761 P17655 CAPN2 Calpain-2 catalytic subunit yes yes 0 0 0 0 0 3.5 0.5 1 1 51.049 51.049 2 0.0022821 14616 TMT1-3 99.855 71.687 130.86 220.08 182.04 192.85 152.79 166.2 124 218 189 189 160 160 2 2 2 2 2 2 49532 21208 761 20954 32545;32546 42042;42043 42043 2 YLNTNPVGGLLEYAR Unmodified 1678.8679 0.8678702 1319 P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 0 7 0 1 71.378 71.378 3 0.0048048 21992 TMT1-6 57.475 33.87 30.548 75.078 31.923 53.213 33.377 53.414 29 73 36 51 36 51 1 1 1 1 1 1 11650 21209 1319 20955 32547 42044 42044 1 YLNTQFIK Unmodified 1025.5546 0.55458155 1729 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 0 8 0 1 57.761 57.761 2 0.015037 16677 TMT1-7 93.178 61.047 77.411 102.18 67.767 105.46 105.54 105.72 73 102 73 102 109 102 1 1 1 1 1 1 6204.7 21210 1729 20956 32548 42045 42045 1 YLPALGYSK Unmodified 1010.5437 0.54368251 1297 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8.5 0.5 1 1 59.667 59.667 2 0.00019391 15548 TMT1-8 143.01 73.012 223.19 358.72 236.6 179.76 210.97 256.22 211 355 247 181 218 246 2 2 2 2 2 2 33148 21211 1297 20957 32549;32550 42046;42047 42047 2 YLPDTLLLEECGLLR Unmodified 1803.9441 0.94407161 837 P21964-2;P21964 COMT Catechol O-methyltransferase yes no 0 0 0 0 0 5.5 0.5 1 1 81.344 81.344 2;3 4.6545E-05 26261 TMT1-4 95.094 60.373 53.927 87.94 59.323 122.54 95.848 151.83 51 87 65 117 102 145 2 2 2 2 2 2 25382 21212 837 20958 32551;32552 42048;42049 42048 2 YLPENDLKR Unmodified 1146.6033 0.60332266 86 O00743-2;O00743 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 1 6 0 1 42.812 42.812 3 0.034638 11284 TMT1-5 56.202 18.181 185.86 408.5 336.65 275.62 318 361.89 177 401 346 276 328 348 1 1 1 1 1 1 21715 21213 86 20959 32553 42050 42050 1 YLPHSAGR Unmodified 899.46135 0.46134987 1136 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 0 6 0 1 28.069 28.069 3 0.0099187 5435 TMT1-5 74.255 43.197 15.82 29.433 21.309 14.587 28.63 30.097 15 29 22 15 29 29 1 1 1 1 1 1 13482 21214 1136 20960 32554 42051 42051 1 YLPQLAK Unmodified 831.48544 0.48543935 2335 Q92947;Q92947-2 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 8 0 1 54.995 54.995 2 0.024426 15525 TMT1-7 94.163 49.471 161.33 195.47 131.24 124.13 132.15 189.18 152 196 138 123 138 181 1 1 1 1 1 1 16494 21215 2335 20961 32555 42052 42052 1 YLPSSSTPLTLSFFVK Unmodified 1785.9553 0.95528822 2194 Q8N9U0-2;Q8N9U0 TC2N Tandem C2 domains nuclear protein yes no 0 0 0 0 0 9 0 1 82.637 82.637 2 4.4946E-05 24613 TMT1-8 73.632 51.546 7.4703 0 6.836 15.721 14.176 23.047 7 0 7 15 15 22 1 0 1 1 1 1 2502 21216 2194 20962 32556 42053 42053 1 YLQDLLAWVEENQHR Unmodified 1912.9432 0.94316041 1833 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 0 7.5 0.5 1 1 85.097 85.097 3 1.5983E-10 27342 TMT1-6 118.52 113.19 62.416 103.28 62.265 59.174 85.166 121.23 59 102 66 59 88 116 3 3 3 3 3 3 18746 21217 1833 20963 32557;32558 42054;42055;42056 42055 3 YLQEAFHVEPEEHQQTLQR Unmodified 2381.14 0.14002231 2066 Q70J99;Q70J99-3;Q70J99-2 UNC13D Protein unc-13 homolog D yes no 0 0 0 0 0 3.5 0.5 1 1 47.948 47.948 4 1.1356E-35 13389 TMT1-3 159.75 112.86 321.97 457.03 321.58 290.28 400.3 352.08 304 455 336 290 407 341 3 3 3 3 3 3 100850 21218 2066 20964 32559;32560 42057;42058;42059 42059 3 YLQEEVNINR Unmodified 1276.6412 0.64116473 2864 Q9UHD8-5;Q9UHD8-7;Q9UHD8-2;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 0 3 0 1 48.365 48.365 2 2.9956E-06 14599 TMT1-2 156.83 125.45 199.78 379.24 185.06 194.35 238.02 271.43 189 372 201 192 245 261 1 1 1 1 1 1 38078 21219 2864 20965 32561 42060 42060 1 YLQEIYNSNNQK Unmodified 1512.7209 0.72087161 439 P02679-2;P02679 FGG Fibrinogen gamma chain yes no 0 0 0 0 0 5.4 2.33 1 3 1 53.592 53.592 2;3 4.9111E-44 15485 TMT1-5 226.29 157.73 1302.5 1732.1 1432.4 1117.5 1190.6 1971.2 1230 1733 1472 1121 1252 1881 7 7 7 7 7 7 770750 21220 439 20966 32562;32563;32564;32565;32566 42061;42062;42063;42064;42065;42066;42067 42065 7 YLQEVIDVLETDGHFR Unmodified 1932.9581 0.95814177 1572 Q02818 NUCB1 Nucleobindin-1 yes yes 0 0 0 0 0 5 0 1 84.863 84.863 3 0.011381 27676 TMT1-4 50.252 36.506 23.291 28.808 28.561 21.792 29.333 0 22 29 29 22 29 0 1 1 1 1 1 0 4239.4 21221 1572 20967 32567 42068 42068 1 YLQQLAEKPLETR Unmodified 1587.8621 0.86205654 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 1 6 0 1 56.287 56.287 3 6.3893E-05 16621 TMT1-5 100.73 71.715 139.11 135.3 128.8 92.513 135.73 127.24 131 138 131 94 138 123 1 1 1 1 1 1 12195 21222 1552 20968 32568 42069 42069 1 YLQSLLAEVER Unmodified 1319.7085 0.70851601 342 O95232 LUC7L3 Luc7-like protein 3 yes yes 0 0 0 0 0 6 0 1 76.407 76.407 2 0.0043497 24551 TMT1-5 88.338 46.358 38.074 50.861 49.964 44.331 41.649 68.102 36 51 51 44 44 65 1 1 1 1 1 1 5060.5 21223 342 20969 32569 42070 42070 1 YLQTLTTIAAEK Unmodified 1350.7395 0.73948179 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 0 5.75 2.77 1 2 1 69.687 69.687 2;3 5.796E-25 21173 TMT1-6 195.25 172.77 1956.3 2251.8 2208.2 1875.1 1979.3 2571.2 1846 2275 2252 1870 2059 2465 5 5 5 5 5 5 584720 21224 906 20970 32570;32571;32572;32573 42071;42072;42073;42074;42075 42072 5 YLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAK Unmodified 3458.9099 0.90986494 906 P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 1 9 0 1 102.48 102.48 5 0.04209 32078 TMT1-8 23.776 15.269 39.406 14.511 37.335 36.594 28.116 46.102 37 15 37 36 30 44 2 1 2 2 2 2 2122.2 21225 906 20971 32574 42076;42077 42077 2 YLSEVASGDNK Unmodified 1181.5564 0.55643205 984 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 0 4.67 0.471 1 2 47.927 47.927 2;3 1.2507E-11 13163 TMT1-4 171.85 122.44 1582.6 2041.6 1521.3 1418.5 1700.2 2048.3 1493 2043 1585 1410 1755 1967 5 5 5 5 5 5 328680 21226 984 20972 32575;32576;32577 42078;42079;42080;42081;42082 42080 5 YLSFHFK Unmodified 940.48069 0.48068833 1279 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 0 9 0 1 55.453 55.453 3 0.0012962 13891 TMT1-8 128.57 76.163 298.36 449.98 329.68 266.31 370.32 404.11 282 447 342 268 379 389 2 2 2 2 2 2 26743 21227 1279 20973 32578 42083;42084 42083 2 YLSFTPPEK Unmodified 1080.5492 0.54916182 1680 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 0 7 0 1 59.242 59.242 2 0.041553 17193 TMT1-6 69.375 28.346 46.647 73.987 32.281 44.829 71.183 90.711 44 73 36 44 73 87 1 1 1 1 1 1 5992.3 21228 1680 20974 32579 42085 42085 1 YLSNAYAR Unmodified 956.47158 0.4715802 59 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 39.635 39.635 2 0.001381 9909 TMT1-4 142.36 113.5 1161.9 1564.4 1407.1 1175.5 1381.8 1686.4 1098 1566 1441 1176 1428 1619 2 2 2 2 2 2 273390 21229 59 20975 32580;32581 42086;42087 42086 2 YLSSANPNDNR Unmodified 1249.5687 0.56872807 1708 Q13464 ROCK1 Rho-associated protein kinase 1 yes yes 0 0 0 0 0 4 0 1 35.108 35.108 2 0.00097015 8405 TMT1-3 100.69 85.714 15.812 21.857 29.016 21.795 27.749 46.112 15 22 29 22 29 44 1 1 1 1 1 1 4084.8 21230 1708 20976 32582 42088 42088 1 YLTLDGFDAMFR Unmodified 1447.6806 0.6805867 2079 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 0 8 0 1 82.794 82.794 2 0.0034672 26420 TMT1-7 81.017 43.294 46.792 43.091 34.114 45.267 42.119 53.164 44 44 36 44 44 51 1 1 1 1 1 1 10774 21231 2079 20977 32583 42089 42089 1 YLTNAYSR Unmodified 986.48214 0.48214489 3048 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 0 6 0 1 40.333 40.333 2 0.017525 10304 TMT1-5 90.761 81.368 114.9 218.32 160.83 138.78 131.18 197.73 109 215 167 138 138 189 1 1 1 1 1 1 18913 21232 3048 20978 32584 42090 42090 1 YLTTAVITNK Unmodified 1122.6285 0.62847478 1353 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 0 8 0 1 56.147 56.147 3 0.00010288 16007 TMT1-7 114.51 93.813 115.67 129.82 105.7 86.81 105.33 136.64 109 131 109 87 109 131 1 1 1 1 1 1 21434 21233 1353 20979 32585 42091 42091 1 YLTVAAVFR Unmodified 1038.5862 0.58621603 537;1493 P07437;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 0 9 0 1 65.098 65.098 2 0.00016306 17772 TMT1-8 146.54 104.08 2913.9 4273.7 3290.2 2928.8 3310 4108.8 2754 4253 3412 2916 3428 3943 2 2 2 2 2 2 851830 21234 537;1493 20980 32586 42092;42093 42093 2 YLTVACIFR Unmodified 1141.5954 0.59540051 2650 Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008 TUBB1 Tubulin beta-1 chain yes no 0 0 0 0 0 5 4 1 1 68.494 68.494 2 4.9095E-31 18920 TMT1-8 219.16 158.68 1272.8 2081.2 1803 1390.9 1690.5 1971.8 1206 2065 1845 1400 1742 1895 3 3 3 3 3 3 871590 21235 2650 20981 32587;32588 42094;42095;42096 42096 3 YLTVATVFR Unmodified 1068.5968 0.59678072 1713 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain no no 0 0 0 0 0 9 0 1 63.615 63.615 2 0.005415 17152 TMT1-8 83.623 35.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21236 1713 20982 32589 42097 42097 1 YLTVQNTVR Unmodified 1092.5928 0.59275797 2980 Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 0 0 0 0 0 7 0 1 44.288 44.288 2 0.0024497 11273 TMT1-6 103.8 64.586 46.317 95.733 69.369 81.713 84.659 75.402 44 94 73 80 87 73 1 1 1 1 1 1 8130.1 21237 2980 20983 32590 42098 42098 1 YLTWASR Unmodified 895.4552 0.45520186 424 P01876;P01877;P0DOX2 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region yes no 0 0 0 0 0 9 0 1 51.493 51.493 2 0.0094984 12381 TMT1-8 92.187 48.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21238 424 20984 32591 42099 42099 1 YLVALGHAYHPEEFVCSQCGK Unmodified 2464.1304 0.13038561 2718 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 7 0 1 57.611 57.611 4 2.4604E-14 16516 TMT1-6 113.29 102.14 68.479 124.46 107.31 63.193 77.412 97.995 65 123 109 65 80 94 1 1 1 1 1 1 15840 21239 2718 20985 32592 42100 42100 1 YLVIDEAHR Unmodified 1114.5771 0.57710791 217 O60264;P28370-2;P28370 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 0 0 0 0 0 4 0 1 43.15 43.15 3 0.0047509 11580 TMT1-3 76.221 46.883 30.553 74.013 32.02 52.473 72.408 44.838 29 72 36 51 73 44 1 1 1 1 1 1 7758.5 21240 217 20986 32593 42101 42101 1 YLVLDEADR Unmodified 1092.5451 0.54513908 82 O00571-2;O00571;O15523-2;O15523;Q9NQI0-3;Q9NQI0-2;Q9NQI0-4;Q9NQI0 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 0 0 0 3.5 0.5 1 1 54.597 54.597 2 0.00020129 17143 TMT1-2 145.92 90.201 223.48 258.08 272.34 193 265.58 232.27 211 261 275 196 270 225 2 2 2 2 2 2 51254 21241 82 20987 32594;32595 42102;42103 42102 2 YLVYGDEYK Unmodified 1148.539 0.53899107 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 5 0 1 55.318 55.318 2 0.0011665 16100 TMT1-4 82.426 47.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21242 1999 20988 32596 42104 42104 1 YLWNNIK Unmodified 949.50215 0.50215205 475 P04632;Q96L46 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 0 0 0 0 0 9 0 1 59.502 59.502 2 0.011528 15574 TMT1-8 116.35 42.423 200.81 358.7 391.33 328.02 438.58 466.12 191 356 396 329 449 449 1 1 1 1 1 1 94250 21243 475 20989 32597 42105 42105 1 YLYEIAR Unmodified 926.48617 0.48616764 28;29 CON__P02768-1;P02768;CON__P02769 ALB Serum albumin no no 0 0 0 0 0 4 2.16 1 1 1 52.194 52.194 2 0.0076695 14864 TMT1-4 125.08 0 1831.8 2153.7 2466.8 1363.6 2319.1 2588.2 1731 2179 2464 1422 2362 2490 5 5 5 5 5 5 640160 + 21244 28;29 20990 32598;32599;32600 42106;42107;42108;42109;42110 42108 5 YLYPNIDKDHAFGK Unmodified 1679.8308 0.83075641 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 1 8 0 1 54.344 54.344 4 0.00067798 15290 TMT1-7 75.669 50.491 383.51 657.17 448.98 481.38 586.73 546.11 363 649 473 475 600 528 1 1 1 1 1 1 37876 21245 1091 20991 32601 42111 42111 1 YLYSSEDYIK Unmodified 1279.5972 0.59723423 1683 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 0 5 0 1 56.978 56.978 3 6.8584E-05 16724 TMT1-4 89.029 56.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21246 1683 20992 32602 42112 42112 1 YLYTLVITDK Unmodified 1227.6751 0.67509062 1473 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 0 8 0 1 71.656 71.656 2 6.2335E-06 22138 TMT1-7 120.68 84.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21247 1473 20993 32603 42113 42113 1 YLYTLVITDKEK Unmodified 1484.8126 0.81264673 1473 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 1 8 0 1 64.532 64.532 4 0.00048571 19337 TMT1-7 87.001 70.335 176.51 250.12 237.91 180.32 293.22 266.66 167 250 242 183 297 258 1 1 1 1 1 1 13107 21248 1473 20994 32604 42114 42114 1 YLYVDKNFINNPLAQADWAAK Unmodified 2453.2379 0.23794545 1019 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 1 8.67 0.471 1 2 75.413 75.413 3;4 3.8812E-46 21540 TMT1-8 166.76 144.96 415.69 533.86 376.28 478.39 336.91 636.38 392 534 399 464 364 606 3 3 3 3 3 3 146980 21249 1019 20995 32605;32606;32607 42115;42116;42117 42116 3 YMACCLLYR Oxidation (M) 1264.5403 0.54027017 1491;2068;1492;2510;14 P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;A6NHL2-2;A6NHL2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3 no no 0 0 1 0 0 7 0 1 50.59 50.59 2 0.018436 13737 TMT1-6 119.56 81.745 61.495 72.477 62.719 66.282 54.492 91.187 58 73 65 65 58 87 1 1 1 1 1 1 10553 21250 1491;2068;2510;1492;14 20996 32608 42118 42118 2 1 YMACCLLYR Unmodified 1248.5454 0.54535555 1491;2068;1492;2510;14 P68363;P68363-2;Q71U36-2;Q71U36;Q9BQE3;P68366-2;P68366;A6NHL2-2;A6NHL2 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3 no no 0 0 0 0 0 8.67 0.471 1 2 56.613 56.613 2 2.2702E-13 16183 TMT1-7 180.49 134.1 503.1 524.99 299.55 672.79 413.96 1087.2 473 530 336 639 461 1031 3 3 3 3 3 3 201540 21251 1491;2068;2510;1492;14 20996 32609;32610;32611 42119;42120;42121;42122 42119 4 YMALSLQSFCPTTR Unmodified 1673.7905 0.79054786 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 9 0 1 68.223 68.223 3 7.6865E-07 18970 TMT1-8 100.19 61.418 61.784 49.535 33.669 44.879 64.124 52.536 58 51 36 44 65 51 1 1 1 1 1 1 6986.7 21252 1552 20997 32612 42123 42123 1 YMEAFKPFLGIGLK Unmodified 1612.8687 0.86872182 1803 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 1 9 0 1 76.612 76.612 3 0.0011747 22234 TMT1-8 61.167 32.535 123.11 129.09 119.49 117.36 122.52 143.61 116 131 123 116 127 138 2 2 2 2 2 2 11544 21253 1803 20998 32613 42124;42125 42124 2 YMHSGPVVAMVWEGLNVVK Unmodified 2115.0645 0.064537872 846;724 P22392-2;P15531;P15531-2 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 0 0 0 0 0 9 0 1 77.088 77.088 4 1.1048E-06 22422 TMT1-8 71.697 44.362 38.166 51.115 34.401 29.003 34.234 60.851 36 51 36 29 36 58 1 1 1 1 1 1 5133.8 21254 846;724 20999 32614 42126 42126 1 YMLLPNQVWDSIIQQATK Unmodified 2147.1085 0.10851118 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 2 93.008 93.008 3;4 1.3813E-11 28511 TMT1-8 108.77 68.19 116 99.435 76.01 89.769 100.22 98.838 109 102 80 88 103 95 4 4 4 4 4 3 11191 21255 121 21000 32615;32616 42127;42128;42129;42130 42129 4 YMLPLDNLK Unmodified 1105.5842 0.58416712 1226;2942 P50570-5;P50570;P50570-2;P50570-4;P50570-3;Q9UQ16-2;Q9UQ16-3;Q9UQ16;Q9UQ16-4 DNM2;DNM3 Dynamin-2;Dynamin-3 no no 0 0 0 0 0 8 0 1 67.572 67.572 3 0.0032122 20478 TMT1-7 79.906 43.573 30.649 42.98 42.186 36.058 41.239 60.651 29 43 43 36 43 58 1 1 1 1 1 1 7404.9 21256 1226;2942 21001 32617 42131 42131 1 YMLSVDNLK Unmodified 1081.5478 0.54778161 1591 Q05193-3;Q05193;Q05193-5;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 0 0 7 0 1 61.677 61.677 3 0.0011526 18136 TMT1-6 66.692 41.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21257 1591 21002 32618 42132 42132 1 YMNPAIVAPDGFDIIDMTAGGQINSDQR Unmodified 3008.4008 0.40080639 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 6 0 1 85.324 85.324 4 6.1729E-05 28021 TMT1-5 53.209 51.419 15.899 22.099 14.143 15.285 14.196 23.047 15 22 15 15 15 22 1 1 1 1 1 1 4842.9 21258 1723 21003 32619 42133 42133 1 YMNSGPVVAMVWEGLNVVK Unmodified 2092.0486 0.048553457 846 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 0 9 0 2 90.459 90.459 3;4 3.8443E-21 27516 TMT1-8 128.1 94.899 139.51 136.41 60.739 129.67 119.32 128.78 131 138 66 124 124 124 4 4 3 4 4 4 21422 21259 846 21004 32620;32621 42134;42135;42136;42137 42134 4 YMPFAPAIQTFHHLK Unmodified 1799.9181 0.91813163 1081 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 yes yes 0 0 0 0 0 9 0 1 60.826 60.826 4 3.9109E-06 16031 TMT1-8 92.039 67.785 145.99 232.31 153.67 107.24 145.35 253.82 138 230 160 109 152 242 1 1 1 1 1 1 10094 21260 1081 21005 32622 42138 42138 1 YMPQNPCIIATK Unmodified 1434.6999 0.69994194 1630 Q09028-3;Q09028;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 0 8 0 1 56.166 56.166 3 0.00027855 16070 TMT1-7 89.959 67.042 99.419 153.14 112.68 70.655 128.6 150.9 94 152 116 73 131 145 1 1 1 1 1 1 10574 21261 1630 21006 32623 42139 42139 1 YMVADKFTELQK Unmodified 1471.7381 0.73810158 956 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 1 8 0 1 59.259 59.259 3 0.021288 17272 TMT1-7 56.951 34.095 107.61 200.03 138.84 123.56 138.7 212.44 102 197 145 123 145 203 1 1 1 1 1 1 11563 21262 956 21007 32624 42140 42140 1 YNACILEYK Unmodified 1172.5536 0.55359527 1888 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 0 6 0 1 56.591 56.591 3 0.04196 16763 TMT1-5 47.261 21.602 61.066 133.88 82.9 64.951 61.332 106.98 58 131 87 65 65 102 1 1 1 1 1 1 5093.9 21263 1888 21008 32625 42141 42141 1 YNAEKPK Unmodified 848.43922 0.43921744 457 P04040 CAT Catalase yes yes 0 0 0 0 1 6 0 1 32.648 32.648 3 0.033142 7235 TMT1-5 69.423 37.489 578.32 452.35 522.26 474.6 366.13 460.72 544 470 530 469 386 442 1 1 1 1 1 1 26456 21264 457 21009 32626 42142 42142 1 YNALLAVQK Unmodified 1018.5811 0.58113065 2874 Q9UI12-2;Q9UI12 ATP6V1H V-type proton ATPase subunit H yes no 0 0 0 0 0 8 0 1 56.797 56.797 3 0.017015 16292 TMT1-7 60.019 30.21 46.343 88.253 71.204 50.583 48.69 67.901 44 87 73 51 51 65 1 1 1 1 1 1 6127.7 21265 2874 21010 32627 42143 42143 1 YNALYSLDGLAVVNVK Unmodified 1737.9301 0.93013611 2152 Q8IYI6 EXOC8 Exocyst complex component 8 yes yes 0 0 0 0 0 8 0 1 76.844 76.844 3 0.00071772 24178 TMT1-7 53.395 33.289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21266 2152 21011 32628 42144 42144 1 YNDPIYVK Unmodified 1010.5073 0.50729701 1637;1467 P63010-2;P63010;P63010-3;Q10567-3;Q10567-4;Q10567-2;Q10567 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 0 5 0 1 50.376 50.376 2 0.00086049 14146 TMT1-4 147.36 96.465 145.38 284.58 211.31 175.92 204.86 195.63 138 280 219 176 210 189 1 1 1 1 1 1 22886 21267 1467;1637 21012 32629 42145 42145 1 YNEDLELEDAIHTAILTLK Unmodified 2200.1263 0.12632931 891 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 0 6.2 0.748 1 2 2 86.621 86.621 3;4 2.7053E-07 28452 TMT1-5 89.668 59.253 277.8 293.15 310.74 200.52 267.01 363.35 262 298 313 205 276 348 7 7 7 7 7 7 53903 21268 891 21013 32630;32631;32632;32633;32634 42146;42147;42148;42149;42150;42151;42152 42147 7 YNEETFGYEVPIKEEGDYVLVLK Unmodified 2733.3425 0.34252968 1759 Q14165 MLEC Malectin yes yes 0 0 0 0 1 5.5 0.5 1 1 74.312 74.312 3;4 3.6502E-06 23580 TMT1-4 68.88 56.567 107.12 106.74 120.19 133.51 133.55 135.84 101 109 123 131 138 131 2 2 2 2 2 2 26025 21269 1759 21014 32635;32636 42153;42154 42153 2 YNEQHVPGSPFTAR Unmodified 1601.7587 0.7586541 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 2.58 1 1 1 1 1 1 40.914 40.914 3 2.1525E-07 10399 TMT1-4 107.46 80.489 1542.6 1833.9 1762 1328.3 1667.1 1916 1456 1849 1792 1340 1715 1842 10 10 10 10 10 10 787310 21270 831 21015 32637;32638;32639;32640;32641;32642 42155;42156;42157;42158;42159;42160;42161;42162;42163;42164 42157 10 YNFFTGCPK Unmodified 1132.5012 0.50116577 2496 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 0 9 0 1 58.255 58.255 3 0.00054718 14988 TMT1-8 105.4 65.687 230.8 360.66 217.01 251.57 290.59 278.46 218 357 232 247 298 269 2 2 2 2 2 2 31065 21271 2496 21016 32643 42165;42166 42165 2 YNFHGTAEQDLPFCK Unmodified 1825.8094 0.80936904 1083 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 0 6 0 1 54.249 54.249 3 8.5702E-06 15848 TMT1-5 95.57 78.064 54.065 73.215 48.557 43.996 63.908 60.004 51 73 51 44 65 58 1 1 1 1 1 1 9326.2 21272 1083 21017 32644 42167 42167 1 YNFPLVTLYATLGK Unmodified 1598.8708 0.87083031 222 O60488-2;O60488 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 0 0 0 0 0 9 0 1 86.287 86.287 3 5.8894E-05 26028 TMT1-8 81.904 50.229 61.271 79.408 94.541 71.292 94.064 59.144 58 80 95 72 95 58 2 2 2 2 2 2 3926.3 21273 222 21018 32645 42168;42169 42169 2 YNFVLQVAK Unmodified 1080.5968 0.59678072 1684 Q13201 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes yes 0 0 0 0 0 9 0 1 63.823 63.823 2 5.4747E-07 17266 TMT1-8 170.66 126.86 1276.9 1378.6 1168.6 815.29 1124.8 1458.2 1203 1395 1196 829 1159 1398 2 2 2 2 2 2 239590 21274 1684 21019 32646 42170;42171 42171 2 YNGQVCGGPGR Unmodified 1163.5142 0.51419008 485 P05107 ITGB2 Integrin beta-2 yes yes 0 0 0 0 0 3 0 1 33.703 33.703 2 0.0091163 8786 TMT1-2 79.059 69.353 61.228 118.14 69.02 57.677 85.251 90.309 58 116 73 58 87 87 1 1 1 1 1 1 10952 21275 485 21020 32647 42172 42172 1 YNIEKDIAAYIK Unmodified 1439.766 0.76603089 2402 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 0 0 0 0 1 7 0 1 65.92 65.92 3 0.0010196 19784 TMT1-6 83.358 56.817 169.91 197.05 129.7 155.73 142.35 276.3 160 198 138 152 152 263 1 1 1 1 1 1 14833 21276 2402 21021 32648 42173 42173 1 YNIEVVCEYIVK Unmodified 1527.7643 0.76431633 1077 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 0 6 0 1 71.409 71.409 3 0.00052486 22563 TMT1-5 84.365 62.167 54.254 42.442 42.795 44.744 42.399 45.694 51 44 44 44 44 44 1 1 1 1 1 1 9993.8 21277 1077 21022 32649 42174 42174 1 YNIIPVLSDILQESVK Unmodified 1830.0139 0.013865735 2874 Q9UI12-2;Q9UI12 ATP6V1H V-type proton ATPase subunit H yes no 0 0 0 0 0 8 0 1 96.217 96.217 3 1.6293E-08 31338 TMT1-7 105.31 65.805 15.74 36.767 28.462 14.16 28.65 30.096 15 36 29 15 29 29 1 1 1 1 1 1 4862.2 21278 2874 21023 32650 42175 42175 1 YNILGTNTIMDK Unmodified 1381.6912 0.69115139 1545 Q00839-2;Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 0 7 0 1 64.639 64.639 3 0.0031719 19263 TMT1-6 68.809 41.711 153.5 224.23 161.11 144.45 235.46 229.93 145 223 168 145 239 222 1 1 1 1 1 1 55970 21279 1545 21024 32651 42176 42176 1 YNLAIEEHCTFGDPIV Unmodified 1876.8665 0.86654957 2844 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 0 0 0 4 0 1 68.443 68.443 3 0.0041624 21579 TMT1-3 54.234 36.317 23.162 36.006 44.046 28.834 12.621 477.21 22 36 44 29 29 448 1 1 1 1 1 1 6229.5 21280 2844 21025 32652 42177 42177 1 YNLGLDLR Unmodified 962.51853 0.5185304 387 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 6 0 1 57.209 57.209 2 0.0088247 16948 TMT1-5 101.33 34.528 169.05 317.67 173.64 221.47 285.19 262.63 160 312 188 217 291 254 2 2 2 2 2 2 45752 21281 387 21026 32653 42178;42179 42178 2 YNMGLPVDFDQYNELHLPAVILK Unmodified 2688.3622 0.36215968 1616 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 0 0 0 0 0 7.5 0.5 1 1 83.773 83.773 3;4 4.4633E-23 26795 TMT1-6 122.53 109.6 77.489 102.39 54.342 66.481 70.444 83.27 73 102 59 65 73 80 2 2 2 2 2 2 20111 21282 1616 21027 32654;32655 42180;42181 42180 2 YNPENLATLER Unmodified 1318.6517 0.65172941 2842 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 0 3.5 0.5 1 1 52.668 52.668 2 2.4336E-08 15290 TMT1-3 158.02 137.28 122.56 205.28 146.44 138.52 190.9 225.87 116 203 153 138 196 217 2 2 2 2 2 2 34446 21283 2842 21028 32656;32657 42182;42183 42183 2 YNPIGESVLR Unmodified 1146.6033 0.60332266 1552 Q01433-2;Q01433;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 0 5 0 1 52.816 52.816 2 2.2802E-06 15105 TMT1-4 159.34 104.81 139.24 170.19 77.917 119.07 163.26 173.36 131 170 87 116 167 167 1 1 1 1 1 1 24141 21284 1552 21029 32658 42184 42184 1 YNPTWHCIVGR Unmodified 1401.6612 0.66118866 2402 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic no no 0 0 0 0 0 8 0 1 46.036 46.036 3 0.00049374 12039 TMT1-7 92.247 56.338 415.04 539.63 479.28 344.66 495.58 611.6 392 541 489 350 509 587 1 1 1 1 1 1 81849 21285 2402 21030 32659 42185 42185 1 YNQATPNFHQWR Unmodified 1560.7222 0.72220902 1225 P50552 VASP Vasodilator-stimulated phosphoprotein yes yes 0 0 0 0 0 7.5 0.5 1 1 42.563 42.563 3 7.1677E-09 10645 TMT1-6 134.49 85.067 276.85 428.65 355.74 295.43 424.77 454.79 262 426 366 297 434 438 3 3 3 3 3 3 97287 21286 1225 21031 32660;32661 42186;42187;42188 42186 3 YNQATPTFHQWR Unmodified 1547.727 0.72696004 2872 Q9UI08;Q9UI08-2;Q9UI08-4;Q9UI08-5;Q9UI08-3 EVL Ena/VASP-like protein yes no 0 0 0 0 0 8 1 1 1 42.459 42.459 3 0.0012219 10590 TMT1-6 77.185 62.309 77.103 116.43 107.38 71.513 99.771 105.89 73 116 109 73 102 102 2 2 2 2 2 2 10665 21287 2872 21032 32662;32663 42189;42190 42189 2 YNQPFFVTSLPDDKIPK Unmodified 2008.0306 0.030578432 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 1 8 0 1 66.634 66.634 4 1.7852E-05 20151 TMT1-7 82.007 67.084 138.83 197.12 123.67 124.59 131.76 199.85 131 196 131 123 138 191 1 1 1 1 1 1 19503 21288 934 21033 32664 42191 42191 1 YNSDLVQK Unmodified 965.48181 0.48181054 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 5 0 1 43.967 43.967 3 0.0034264 11608 TMT1-4 90.657 49.628 184.17 256.5 207.49 149.42 231.05 230.06 174 256 213 152 235 222 1 1 1 1 1 1 9742.4 21289 1601 21034 32665 42192 42192 1 YNTGGNPTEDVSVNSR Unmodified 1708.7653 0.76525562 126 O15117-3;O15117-2;O15117 FYB FYN-binding protein yes no 0 0 0 0 0 3 0 1 40.319 40.319 3 8.9858E-16 11426 TMT1-2 130.01 101.28 46.652 42.701 58.006 43.846 41.928 60.632 44 44 58 44 44 58 1 1 1 1 1 1 12509 21290 126 21035 32666 42193 42193 1 YNVLGAETVLNQMR Unmodified 1606.8137 0.81372614 1915 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 0 7 0 1 67.062 67.062 3 0.00011743 20220 TMT1-6 84.468 64.688 23.154 59.728 25.296 53.455 41.486 60.644 22 58 29 51 44 58 1 1 1 1 1 1 12482 21291 1915 21036 32667 42194 42194 1 YNVVEMCFLMK Oxidation (M) 1448.6502 0.65021455 3068 yes yes 0 0 1 0 0 3 0 1 53.517 53.517 3 0.033814 16693 TMT1-2 59.426 18.025 84.501 131.79 113.4 84.937 180.55 141.96 80 131 116 87 181 138 1 1 1 1 1 1 41142 + 21292 3068 21037 32668 42195 42195 348 1 YNYLKPR Unmodified 952.51305 0.51305109 1337 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 1 9 0 1 39.668 39.668 3 0.017635 7995 TMT1-8 68.312 40.787 392.23 606.22 470.24 387.6 333.24 590.65 371 602 486 386 355 563 2 2 2 2 2 2 29047 21293 1337 21038 32669 42196;42197 42196 2 YNYTSEEK Unmodified 1032.44 0.4400053 2079;2399 Q7L576;Q96F07-2;Q96F07 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 no no 0 0 0 0 0 4 0 1 38.113 38.113 2 0.00099669 9575 TMT1-3 93.111 72.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21294 2079;2399 21039 32670 42198 42198 1 YPALHKPENQDIDWGALEGETR Unmodified 2538.2139 0.21391554 690 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 1 4 2.16 1 1 1 57.618 57.618 4 1.0857E-36 17061 TMT1-5 147.9 137.5 1011.2 1812.8 1089.8 986.16 1413.8 1310.3 957 1785 1153 986 1438 1267 5 5 5 5 5 5 410430 21295 690 21040 32671;32672;32673 42199;42200;42201;42202;42203 42203 5 YPASTVQILGAEK Unmodified 1375.7347 0.73473076 81 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 0 7 0 1 58.598 58.598 3 0.032571 16946 TMT1-6 45.863 9.9036 77.524 86.301 62.162 58.357 70.818 83.259 73 87 65 58 73 80 1 1 1 1 1 1 6253 21296 81 21041 32674 42204 42204 1 YPDYEVTWANDGY Unmodified 1591.6467 0.64670362 2735 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase yes yes 0 0 0 0 0 3.5 0.5 1 1 72.86 72.86 2 0.00052623 24230 TMT1-2 91.867 73.195 7.3497 45.727 35.51 14.842 30.457 7.0212 7 44 36 15 30 7 1 2 2 1 2 1 7972.4 21297 2735 21042 32675;32676 42205;42206 42205 2 YPEAPPSVR Unmodified 1014.5134 0.51344502 1877 Q15819 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes yes 0 0 0 0 0 4 0 1 39.55 39.55 2 0.0044976 10139 TMT1-3 99.305 84.044 122.71 181.95 141.28 91.532 148.31 188.71 116 181 145 94 152 181 1 1 1 1 1 1 15624 21298 1877 21043 32677 42207 42207 1 YPEAQSVASDILR Unmodified 1447.7307 0.73070802 2478 Q99615-2;Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 0 4 0 1 60.048 60.048 2 0.0024986 18230 TMT1-3 78.964 46.549 38.08 58.431 42.64 28.511 34.256 60.85 36 58 44 29 36 58 1 1 1 1 1 1 6046.4 21299 2478 21044 32678 42208 42208 1 YPFILPHQQVDK Unmodified 1483.7823 0.78234966 2909 Q9ULC4-2;Q9ULC4;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 0 8 0 1 55.477 55.477 3 0.00012717 15839 TMT1-7 96.745 65.105 246.4 265.16 202.29 174.68 241.28 263.88 232 268 210 175 247 254 2 2 2 2 2 2 32410 21300 2909 21045 32679 42209;42210 42210 2 YPIEHGIITNWDDMEK Unmodified 1959.9037 0.90366336 1488 P68032;P63267;P62736;P68133 ACTC1;ACTG2;ACTA2;ACTA1 Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle yes no 0 0 0 0 0 5.08 1.64 1 3 4 3 1 1 61.412 61.412 3;4 1.597E-23 18792 TMT1-4 170.11 136.91 15016 23673 16466 12994 16630 27604 14197 23459 17136 13072 17376 26340 22 22 22 22 22 22 4963900 21301 1488 21046 32680;32681;32682;32683;32684;32685;32686;32687;32688;32689;32690;32691;32692 42211;42212;42213;42214;42215;42216;42217;42218;42219;42220;42221;42222;42223;42224;42225;42226;42227;42228;42229;42230;42231;42232;42233 42225 23 YPIEHGIITNWDDMEK Oxidation (M) 1975.8986 0.89857798 1488 P68032;P63267;P62736;P68133 ACTC1;ACTG2;ACTA2;ACTA1 Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha skeletal muscle yes no 0 0 1 0 0 5.11 0.567 1 6 2 57.942 57.942 3;4 6.8885E-07 17522 TMT1-4 102.64 84.099 4492.5 6936.7 5145.5 4732.3 4925.1 8090 4248 6885 5356 4695 5182 7721 26 26 26 26 26 26 966640 21302 1488 21046 32693;32694;32695;32696;32697;32698;32699;32700;32701 42234;42235;42236;42237;42238;42239;42240;42241;42242;42243;42244;42245;42246;42247;42248;42249;42250;42251;42252;42253;42254;42255;42256;42257;42258;42259 42243 239 26 YPIEHGIVTNWDDMEK Unmodified 1945.888 0.88801329 1357;1479 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 0 5 0 1 60.928 60.928 3 9.872E-07 18301 TMT1-4 97.235 90.462 92.289 92.114 100.46 87.817 68.401 114.24 87 94 102 87 73 109 1 1 1 1 1 1 17405 21303 1357;1479 21047 32702 42260 42260 1 YPLLNTVETLTAAGTLIAK Unmodified 1988.1194 0.11939344 2309 Q92619;Q92619-2 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 yes no 0 0 0 0 0 9 0 1 91.73 91.73 3 7.0354E-22 28120 TMT1-8 133.93 101.2 131 211.84 165.66 110.15 127.1 212.77 124 210 170 112 131 203 4 4 4 4 3 4 16582 21304 2309 21048 32703 42261;42262;42263;42264 42263 4 YPLNCSDPTSER Unmodified 1437.6194 0.61944301 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 3.5 0.5 1 1 42.499 42.499 2;3 5.4457E-10 12392 TMT1-2 155.53 138.59 76.864 171.89 100.51 151.09 133 128.39 73 168 109 146 138 124 3 3 3 3 3 3 20570 21305 936 21049 32704;32705 42265;42266;42267 42266 3 YPMEHGIVK Unmodified 1072.5376 0.53755128 1381 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 0 6 0 1 42.224 42.224 3 0.0034409 11073 TMT1-5 78.934 57.377 168.2 378.99 263.79 228.38 329.21 342.39 160 371 275 229 336 330 1 1 1 1 1 1 18952 21306 1381 21050 32706 42268 42268 1 YPNPEEGK Unmodified 932.42396 0.42396131 2407 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 0 4 0 1 38.795 38.795 2 0.017598 9886 TMT1-3 90.709 53.063 68.539 101.96 116.28 62.245 99.427 128.28 65 102 116 65 102 123 1 1 1 1 1 1 22055 21307 2407 21051 32707 42269 42269 1 YPQLLPGIR Unmodified 1055.6128 0.61276513 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 0 8 0 1 60.46 60.46 2 0.011554 17686 TMT1-7 86.794 53.243 92.099 122.89 106.23 86.886 99.613 89.899 87 123 109 87 102 87 1 1 1 1 1 1 23116 21308 864 21052 32708 42270 42270 1 YPSLSLHGIEGAFSGSGAK Unmodified 1876.9319 0.93192702 2434 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 0 8 0 1 63.197 63.197 3 2.5533E-17 18807 TMT1-7 117.65 91.53 92.419 92.475 78.348 49.345 91.901 121.03 87 94 80 51 94 116 1 1 1 1 1 1 13046 21309 2434 21053 32709 42271 42271 1 YPSPFFVFGEK Unmodified 1316.6441 0.64412484 1619 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 0 9 0 1 75.556 75.556 2 0.00055215 21824 TMT1-8 96.113 49.743 46.626 57.74 49.544 43.523 85.902 90.291 44 58 51 44 87 87 1 1 1 1 1 1 15303 21310 1619 21054 32710 42272 42272 1 YPSPPMGSVSAPNLPTAEDNLEYVR Unmodified 2703.285 0.28503157 1127 P46109 CRKL Crk-like protein yes yes 0 0 0 0 0 5 0 1 67.838 67.838 4 0.0005472 21001 TMT1-4 49.555 41.563 61.033 110.05 108.56 55.492 76.153 144.93 58 109 109 58 80 138 1 1 1 1 1 1 11205 21311 1127 21055 32711 42273 42273 1 YPVNSVNILK Unmodified 1145.6445 0.64445919 770 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 0 8 0 2 58.734 58.734 2;3 2.8734E-07 17016 TMT1-7 166.33 86.419 833.58 1147.8 853.82 810.19 824.78 819.67 787 1145 890 802 851 791 3 3 3 3 3 3 76229 21312 770 21056 32712;32713 42274;42275;42276 42274 3 YPVYGVQWHPEK Unmodified 1501.7354 0.73539946 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 0 7 0 1 52.629 52.629 3 0.0019988 14534 TMT1-6 73.848 49.466 115.27 167.56 141.14 114.87 186.47 203.61 109 167 145 116 190 196 1 1 1 1 1 1 10548 21313 2319 21057 32714 42277 42277 1 YQASHPNLR Unmodified 1084.5414 0.5413911 366 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 0 0 0 5 0 1 27.525 27.525 3 0.017447 5108 TMT1-4 59.645 27.691 38.145 34.868 51.652 27.969 34.538 53.38 36 36 51 29 36 51 1 1 1 1 1 1 2210 21314 366 21058 32715 42278 42278 1 YQASTSNTVSK Unmodified 1184.5673 0.56733108 372 O95810 SDPR Serum deprivation-response protein yes yes 0 0 0 0 0 6.4 1.85 1 1 1 1 1 35.924 35.924 2;3 2.3225E-06 7877 TMT1-7 132.56 114.76 2175.3 2233 2387 1918.4 2537.5 1913.5 2051 2274 2419 1929 2573 1863 7 7 7 7 7 7 436180 21315 372 21059 32716;32717;32718;32719;32720 42279;42280;42281;42282;42283;42284;42285 42284 7 YQCDCTR Unmodified 1001.3695 0.36949967 855 P23219-3;P23219-2;P23219;P23219-6;P23219-5 PTGS1 Prostaglandin G/H synthase 1 yes no 0 0 0 0 0 3 0 1 24.648 24.648 2 0.024647 5199 TMT1-2 93.992 90.623 38.107 43.397 50.815 35.258 56.431 76.208 36 44 51 36 58 73 1 1 1 1 1 1 10575 21316 855 21060 32721 42286 42286 1 YQCTLTHAAGYP Unmodified 1380.6132 0.61323542 1669 Q13094 LCP2 Lymphocyte cytosolic protein 2 yes yes 0 0 0 0 0 5 0 1 46.276 46.276 2 0.045677 12538 TMT1-4 60.518 40.732 23.228 21.079 45.641 13.14 28.44 37.564 22 22 44 15 29 36 1 1 1 1 1 1 7316.2 21317 1669 21061 32722 42287 42287 1 YQDILNEIAK Unmodified 1205.6292 0.62920306 1723 Q13576;Q13576-3;Q13576-2 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 0 0 0 0 0 5.5 0.5 1 1 69.204 69.204 2;3 0.00092245 21533 TMT1-4 91.937 67.083 68.968 79.411 63.31 42.82 79.668 59.555 65 80 65 44 80 58 1 1 1 1 1 1 7923.9 21318 1723 21062 32723;32724 42288;42289 42288 2 YQDLGAYSSAR Unmodified 1229.5677 0.56766543 382 O96000 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes yes 0 0 0 0 0 4 0 1 44.158 44.158 2 0.006721 11991 TMT1-3 83.573 54.424 115.51 168.21 100.93 142.24 137.29 228.47 109 167 109 138 145 218 1 1 1 1 1 1 13131 21319 382 21063 32725 42290 42290 1 YQDQAVLFIPAMK Unmodified 1522.7854 0.78538612 2690 Q9HCN6-2;Q9HCN6;Q9HCN6-3 GP6 Platelet glycoprotein VI yes no 0 0 0 0 0 8 0 1 72.103 72.103 3 0.02668 22308 TMT1-7 48.112 25.233 107.63 128.84 196.67 159.97 169.26 157.2 102 131 196 160 174 152 1 1 1 1 1 1 28259 21320 2690 21064 32726 42291 42291 1 YQDTPGVK Unmodified 906.4447 0.44469675 1283 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 0 5 0 1 38.295 38.295 2 0.0061602 9366 TMT1-4 108.98 62.412 192.07 193.36 197.11 150.94 183.44 213.3 181 197 200 152 189 205 1 1 1 1 1 1 16708 21321 1283 21065 32727 42292 42292 1 YQEALAK Unmodified 821.42832 0.42831841 465 P04179-4;P04179;P04179-2;P04179-3 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 0 0 0 0 0 3 2 1 1 42.805 42.805 2 0.010218 11081 TMT1-4 109.01 46.295 934.96 1429.4 1611 1153 1465.6 1711.7 887 1428 1620 1168 1508 1645 3 3 3 3 3 3 352580 21322 465 21066 32728;32729 42293;42294;42295 42295 3 YQEEFEHFQQELDKK Unmodified 1996.9167 0.91667089 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 1 5 0 1 59.071 59.071 4 0.0022325 17588 TMT1-4 63.134 46.641 139.36 112.24 106.98 79.071 105.98 128.09 131 116 109 80 109 123 1 1 1 1 1 1 9478.1 21323 1174 21067 32730 42296 42296 1 YQEGGVESAFHK Unmodified 1350.6204 0.62042929 1066 P40121-2;P40121 CAPG Macrophage-capping protein yes no 0 0 0 0 0 5 0 1 43.73 43.73 3 3.5937E-06 11488 TMT1-4 114.56 88.904 138.65 227.89 129.04 132.45 161.58 204.33 131 225 138 131 167 196 1 1 1 1 1 1 55490 21324 1066 21068 32731 42297 42297 1 YQEQGGEASPQR Unmodified 1348.6008 0.60075648 2887 Q9UJU6;Q9UJU6-5 DBNL Drebrin-like protein yes no 0 0 0 0 0 2 0 1 27.477 27.477 3 9.175E-08 6006 TMT1-1 122.46 98.623 23.118 35.882 51.661 28.096 27.753 37.584 22 36 51 29 29 36 1 1 1 1 1 1 6855.9 21325 2887 21069 32732 42298 42298 1 YQETFNVIER Unmodified 1297.6303 0.63026569 1663 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 0 4 0 1 53.131 53.131 2 0.0008088 15472 TMT1-3 106.16 94.938 146.11 188.39 170.44 105.59 180.12 187.81 138 189 173 109 183 181 1 1 1 1 1 1 55767 21326 1663 21070 32733 42299 42299 1 YQEVTNNLEFAK Unmodified 1454.7042 0.70415892 1777 Q14444-2;Q14444 CAPRIN1 Caprin-1 yes no 0 0 0 0 0 5 0 1 58.054 58.054 3 0.0091637 17146 TMT1-4 60.157 33.188 122.93 167.45 116.86 124.72 146.23 204.76 116 167 123 123 152 196 1 1 1 1 1 1 7784.1 21327 1777 21071 32734 42300 42300 1 YQFSLSSTEK Unmodified 1188.5663 0.56626845 2791 Q9NZ08;Q9NZ08-2 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 0 0 0 0 0 7 0 1 53.187 53.187 3 0.02073 14788 TMT1-6 54.286 11.542 154.11 141.76 127.27 116.58 139.53 197.49 145 145 131 116 145 189 1 1 1 1 1 1 6579.8 21328 2791 21072 32735 42301 42301 1 YQFVREPEDEEEEEEEEEEDEDEDLEELEVLER Unmodified 4185.7193 0.71933819 2708 Q9NQC3-2;Q9NQC3;Q9NQC3-4 RTN4 Reticulon-4 no no 0 0 0 0 1 3 0 1 73.831 73.831 4 5.9003E-20 24623 TMT1-2 93.6 85.196 0 0 14.876 30.404 21.615 0 0 0 15 29 22 0 0 0 1 1 1 0 5672.1 21329 2708 21073 32736 42302 42302 1 YQGHVGASLIVGGVDLTGPQLYGVHPHGSYSR Unmodified 3320.6691 0.66905782 1069 P40306 PSMB10 Proteasome subunit beta type-10 yes yes 0 0 0 0 0 9 0 1 56.961 56.961 5 0.0013818 14538 TMT1-8 38.512 22.573 46.593 65.204 48.722 51.925 48.629 67.902 44 65 51 51 51 65 1 1 1 1 1 1 3463.4 21330 1069 21074 32737 42303 42303 1 YQGSCGACWAFSAVGALEAQLK Unmodified 2373.0882 0.08818644 889 P25774 CTSS Cathepsin S yes yes 0 0 0 0 0 8 0 2 85.678 85.678 3;4 4.478E-06 27488 TMT1-7 69.133 53.19 46.336 80.677 78.875 58.607 62.671 106.94 44 80 80 59 66 102 2 2 2 2 2 2 8748.9 21331 889 21075 32738;32739 42304;42305 42304 2 YQGVNLYVK Unmodified 1082.576 0.57604528 662 P11940-2;P11940;Q4VXU2;Q4VXU2-2 PABPC1;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 0 0 0 0 0 7.5 0.5 1 1 54.032 54.032 2 3.4E-05 15037 TMT1-6 153.78 101.99 130.3 158.98 148.06 163.63 129.01 227.64 123 160 153 160 138 217 2 2 2 2 2 2 18366 21332 662 21076 32740;32741 42306;42307 42306 2 YQIDPDACFSAK Unmodified 1413.6235 0.62346575 833 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 56.794 56.794 3 0.00030052 16623 TMT1-4 89.46 79.672 214.22 364.72 295.3 239.31 287.49 445.91 203 361 304 240 300 426 2 2 2 2 2 2 54771 21333 833 21077 32742;32743 42308;42309 42308 2 YQIHIPLPPK Unmodified 1204.6968 0.69682911 1033 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 0 8 0 1 56.594 56.594 3 0.013981 16322 TMT1-7 60.518 37.283 60.85 140.84 113.24 78.988 90.538 121.07 58 138 116 80 94 116 1 1 1 1 1 1 10114 21334 1033 21078 32744 42310 42310 1 YQILPLHSQIPR Unmodified 1463.8249 0.82488317 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 8.5 0.5 1 1 51.542 51.542 3 3.7037E-08 14249 TMT1-7 127.17 67.824 207.33 348.61 205.13 172.96 265.87 402.82 196 344 217 174 275 385 2 2 2 2 2 2 32990 21335 1619 21079 32745;32746 42311;42312 42311 2 YQISVNK Unmodified 850.45487 0.45486751 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 5.67 3.4 1 1 1 45.688 45.688 2 8.1134E-05 11734 TMT1-6 156.4 91.625 6656 9595.9 7161.9 5897.3 7844.9 10390 6288 9553 7425 5921 8100 9957 4 4 4 4 4 4 1475400 21336 438 21080 32747;32748;32749 42313;42314;42315;42316 42314 4 YQLDKDGVVLFK Unmodified 1423.7711 0.77111627 530 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 1 7.67 0.471 1 2 61.857 61.857 2;3 7.2542E-09 18202 TMT1-6 141.38 77.654 1213.4 1680.8 1487.6 930.34 1435.4 1517.5 1147 1680 1512 957 1463 1462 4 4 4 4 4 4 330930 21337 530 21081 32750;32751;32752 42317;42318;42319;42320 42317 4 YQLDPTASISAK Unmodified 1292.6612 0.66123147 1119 P45880-2;P45880;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 0 6 0 1 55.295 55.295 3 7.0363E-08 16193 TMT1-5 124.3 92.871 341.07 577.26 436 375.05 470.08 582.48 323 571 452 375 485 559 2 2 2 2 2 2 77257 21338 1119 21082 32753 42321;42322 42321 2 YQLLQLVEPFGVISNHLILNK Unmodified 2437.3733 0.37331671 1109 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 0 9 0 1 88.73 88.73 4 8.8787E-14 26951 TMT1-8 94.856 77.261 61.338 87.15 76.676 97.568 90.233 105.09 58 87 80 95 94 101 2 2 2 2 2 2 9724.3 21339 1109 21083 32754 42323;42324 42323 2 YQLNLPPYPDTECVYR Unmodified 2026.9459 0.94586252 2209 Q8NCW5-2;Q8NCW5 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 0 5 0 1 65.391 65.391 3 0.0026108 20041 TMT1-4 59.862 50.816 38.28 27.688 35.084 45.198 42.672 37.158 36 29 36 44 44 36 1 1 1 1 1 1 5203.6 21340 2209 21084 32755 42325 42325 1 YQLSIHK Unmodified 887.4865 0.48650199 481 P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 0 8 0 1 42.709 42.709 3 0.007332 10680 TMT1-7 87.181 11.147 218.76 366.18 253.51 203.52 347.18 339.74 207 362 264 206 352 328 1 1 1 1 1 1 32726 21341 481 21085 32756 42326 42326 1 YQNLSPVGSGAYGSVCAAFDTK Unmodified 2291.0528 0.052846792 1890 Q16539;Q16539-2;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 0 7 0 1 66.483 66.483 3 6.4155E-13 20031 TMT1-6 99.93 79.855 30.768 28.201 34.741 53.054 32.871 68.352 29 29 36 51 36 65 1 1 1 1 1 1 10205 21342 1890 21086 32757 42327 42327 1 YQPFKPLSIGGIIILK Unmodified 1786.0757 0.075678131 2465 Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 1 9 0 2 77.718 77.718 3;4 1.6372E-06 22673 TMT1-8 93.424 49.633 138.26 203.08 214.52 165.87 206.11 203.05 131 203 217 167 211 196 2 2 2 2 2 2 18336 21343 2465 21087 32758;32759 42328;42329 42328 2 YQPKPAVAHTAER Unmodified 1466.763 0.7630112 2282 Q8WXE9;Q8WXE9-3 STON2 Stonin-2 yes no 0 0 0 0 1 6 0 1 29.498 29.498 4 0.010514 6033 TMT1-5 57.434 15.098 38.275 27.676 35.818 28.751 43.135 45.673 36 29 36 29 44 44 1 1 1 1 1 1 2928.2 21344 2282 21088 32760 42330 42330 1 YQQAGLPLIVLAGK Unmodified 1469.8606 0.86059998 832 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 0 9 0 1 73.901 73.901 2 8.6977E-21 21211 TMT1-8 149.96 115.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21345 832 21089 32761 42331 42331 1 YQQELEEEIKELYENFCK Unmodified 2391.094 0.094042904 2007 Q6DD88 ATL3 Atlastin-3 yes yes 0 0 0 0 1 6 0 1 86.147 86.147 4 0.00085085 28262 TMT1-5 62.203 41.577 70.446 32.975 34.603 45.237 42.12 53.164 66 36 36 44 44 51 1 1 1 1 1 1 4142.6 21346 2007 21090 32762 42332 42332 1 YQQEVDR Unmodified 936.43011 0.43010932 998 P33176;O60282;Q12840;O60282-2 KIF5B;KIF5C;KIF5A Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 0 2 0 1 29.214 29.214 2 0.0252 6668 TMT1-1 93.561 51.332 46.805 50.684 25.379 61.103 41.391 53.185 44 51 29 58 44 51 1 1 1 1 1 1 4942.1 21347 998 21091 32763 42333 42333 1 YQQGDFGYCPR Unmodified 1389.5772 0.57718426 1485 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 0 4 0 1 44.708 44.708 2 2.5125E-05 12201 TMT1-3 117.02 90.233 61.655 56.733 49.174 51.484 70.621 98.189 58 58 51 51 73 94 1 1 1 1 1 1 9327.5 21348 1485 21092 32764 42334 42334 1 YQVFFFGTHETAFLGPK Unmodified 1987.9832 0.98323431 1257 P51858;P51858-2;P51858-3 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 0 9 0 1 71.722 71.722 3 4.9496E-20 20379 TMT1-8 132.51 88.714 54.109 73.339 40.962 44.296 72.014 67.235 51 73 44 44 73 65 1 1 1 1 1 1 7837.2 21349 1257 21093 32765 42335 42335 1 YQVINNVSK Unmodified 1063.5662 0.56620887 1941 Q4KMQ2-3;Q4KMQ2;Q4KMQ2-4;Q4KMQ2-2 ANO6 Anoctamin-6 yes no 0 0 0 0 0 7 0 1 46.736 46.736 2 7.2869E-12 12232 TMT1-6 147.2 128.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21350 1941 21094 32766 42336 42336 1 YQVLLDGLVLQGLYQLLEPR Unmodified 2329.3046 0.30456845 1039 P36543;P36543-2 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 0 9 0 1 111.06 111.06 3 1.1145E-24 34384 TMT1-8 129.02 110.66 0 0 6.8619 15.986 0 7.462 0 0 7 15 0 7 0 0 1 1 0 1 1552.9 21351 1039 21095 32767 42337 42337 1 YQVSWSLDHK Unmodified 1261.6091 0.60913632 1243 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 0 8 1 1 1 50.94 50.94 3 0.00089703 12123 TMT1-8 89.301 57.704 455.57 616.2 636.25 550.69 724.84 726.58 431 618 647 551 741 701 2 2 2 2 2 2 70787 21352 1243 21096 32768;32769 42338;42339 42339 2 YRPGTVALR Unmodified 1031.5876 0.58761301 1496;1525;2067 P68431;Q16695;Q6NXT2;P84243;Q71DI3 HIST1H3A;HIST3H3;H3F3C;H3F3A;HIST2H3A Histone H3.1;Histone H3.1t;Histone H3.3C;Histone H3.3;Histone H3.2 no no 0 0 0 0 1 6 3.56 1 1 1 34.24 34.24 3 0.00075971 7188 TMT1-7 104.39 73.022 2773.9 3977.3 2555.1 2964.3 4336.3 3753.3 2618 3954 2717 2926 4399 3637 6 6 6 6 6 6 973880 21353 1496;1525;2067 21097 32770;32771;32772 42340;42341;42342;42343;42344;42345 42342 6 YRPLFDYFLK Unmodified 1360.718 0.71795849 1085 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 1 9 0 1 69.582 69.582 3 0.0022812 19484 TMT1-8 78.653 38.594 54.107 73.333 41.327 36.1 41.734 76.627 51 73 44 36 44 73 1 1 1 1 1 1 5710.3 21354 1085 21098 32773 42346 42346 1 YRVPDVLVADPPIAR Unmodified 1679.9359 0.93589019 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 1 6 0 1 58.068 58.068 3 0.004594 17289 TMT1-5 63.062 29.101 108.51 76.254 92.659 88.14 75.971 106.56 102 80 94 87 80 102 1 1 1 1 1 1 46636 21355 1792 21099 32774 42347 42347 1 YSASKPLK Unmodified 892.50182 0.5018177 864 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 1 9 0 1 37.893 37.893 3 0.016233 7402 TMT1-8 58.433 29.272 108.16 121.7 112.43 117.57 133.77 150.75 102 123 116 116 138 145 1 1 1 1 1 1 7744.1 21356 864 21100 32775 42348 42348 1 YSDADIEPFLK Unmodified 1296.6238 0.62378333 1744 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 0 5 0 1 65.853 65.853 3 0.0047611 20182 TMT1-4 69.01 44.219 61.098 117.78 91.098 72.622 92.406 75.181 58 116 94 73 94 73 1 1 1 1 1 1 14121 21357 1744 21101 32776 42349 42349 1 YSDESGNMDFDNFISCLVR Unmodified 2267.9463 0.94633281 475 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 0 5.5 0.5 1 1 84.635 84.635 3 1.2593E-06 27761 TMT1-5 81.867 78.985 101.52 153.96 118.84 125.15 117.39 160.81 96 153 124 123 123 154 4 4 4 4 4 4 18039 21358 475 21102 32777;32778 42350;42351;42352;42353 42352 4 YSDFEWLK Unmodified 1086.5022 0.50221163 2921 Q9UMY4-1;Q9UMY4;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 0 6 0 1 67.901 67.901 3 0.00061939 21207 TMT1-5 80.067 55.685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21359 2921 21103 32779 42354 42354 1 YSDFEWLR Unmodified 1114.5084 0.50835964 223 O60493;O60493-4;O60493-3 SNX3 Sorting nexin-3 yes no 0 0 0 0 0 6 0 1 64.905 64.905 2 0.013083 20045 TMT1-5 95.741 64.438 160.84 229.74 183.82 160.9 160.9 186.22 152 229 190 160 167 179 1 1 1 1 1 1 32048 21360 223 21104 32780 42355 42355 1 YSDIDIILLK Unmodified 1191.6751 0.67509062 2336 Q92973-2;Q92973;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 0 6 0 1 75.839 75.839 2 0.0047793 24322 TMT1-5 91.867 42.508 54.059 57.009 63.297 74.984 54.898 67.723 51 58 65 73 58 65 1 1 1 1 1 1 6365.6 21361 2336 21105 32781 42356 42356 1 YSDPGPVYDCLVWHDGEVWR Unmodified 2449.0797 0.079730244 934 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 0 5 0 1 69.166 69.166 3 0.0044559 21552 TMT1-4 48.229 39.52 23.26 36.277 27.44 36.903 43.053 37.147 22 36 29 36 44 36 1 1 1 1 1 1 9451.3 21362 934 21106 32782 42357 42357 1 YSEPDLAVDFDNFVCCLVR Unmodified 2318.0348 0.034753886 536 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 0 0 5.5 0.5 1 1 93.978 93.978 3 8.6918E-20 31141 TMT1-4 113.29 111.02 14.811 25.368 13.948 15.376 10.004 23.167 14 25 15 15 11 22 1 1 1 1 1 1 6246 21363 536 21107 32783;32784 42358;42359 42358 2 YSFLQFDPAPR Unmodified 1339.6561 0.65608651 1482 P67775;P67775-2;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 0 7.67 0.471 1 2 67.108 67.108 2;3 0.00027957 20318 TMT1-7 104.43 74.18 267.22 376.51 395.01 286.68 358.5 447.08 253 377 399 290 370 429 3 3 3 3 3 3 70947 21364 1482 21108 32785;32786;32787 42360;42361;42362 42361 3 YSGAYGASVSDEELK Unmodified 1574.71 0.71003215 2775 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 0 3 0 1 51.276 51.276 3 1.9646E-34 15765 TMT1-2 160.27 142.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21365 2775 21109 32788 42363 42363 1 YSHDFNFHINYGDLGFLGPEDLR Unmodified 2725.2561 0.25611471 3017 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 0 6 0 1 72.001 72.001 4 2.7121E-09 22858 TMT1-5 82.885 79.788 30.562 51.373 49.667 51.144 87.127 44.418 29 51 51 51 87 44 1 1 1 1 1 1 19893 21366 3017 21110 32789 42364 42364 1 YSHVQEVQER Unmodified 1273.6051 0.60511357 2338 Q93008-1;Q93008;O00507-2;O00507 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 0 0 0 0 0 3 0 1 26.924 26.924 3 0.0023903 6153 TMT1-2 80.916 54.243 30.689 44.169 34.534 36.214 57.193 52.734 29 44 36 36 58 51 1 1 1 1 1 1 4212 21367 2338 21111 32790 42365 42365 1 YSLDPENPTK Unmodified 1162.5506 0.55061839 781 P18621-3;P18621 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 0 4 0 1 48.528 48.528 2 0.0077249 13657 TMT1-3 87.568 39.862 99.68 138.76 81.046 95.632 121.2 89.284 94 138 87 94 123 87 1 1 1 1 1 1 14257 21368 781 21112 32791 42366 42366 1 YSLEPVAVELK Unmodified 1246.6809 0.68090428 397 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 0 5.5 0.5 1 1 64.649 64.649 2;3 1.6084E-08 19850 TMT1-5 161.17 102.36 245.12 300.46 386.59 216.21 355.07 275.56 232 304 384 225 358 268 2 2 2 2 2 2 114660 21369 397 21113 32792;32793 42367;42368 42368 2 YSLEQDIR Unmodified 1022.5033 0.50327426 2835 Q9UBC2-3;Q9UBC2;Q9UBC2-2;Q9UBC2-4 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 0 0 0 0 0 3 0 1 45.827 45.827 2 0.0057704 13606 TMT1-2 114.28 32.985 92.199 123.16 89.205 104.35 96.942 144.34 87 123 94 102 102 138 1 1 1 1 1 1 17152 21370 2835 21114 32794 42369 42369 1 YSLFLVCEDSSNDK Unmodified 1675.74 0.73995207 322 O76074-2;O76074 PDE5A cGMP-specific 3',5'-cyclic phosphodiesterase yes no 0 0 0 0 0 6 0 1 67.321 67.321 3 2.2981E-05 20980 TMT1-5 76.311 56.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21371 322 21115 32795 42370 42370 1 YSLLPFWYTLLYQAHR Unmodified 2070.0727 0.072718018 1792 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 0 9 0 1 87.09 87.09 3 9.6121E-32 26352 TMT1-8 176.89 154.24 76.15 117.92 85.896 41.789 62.947 90.946 72 117 88 44 65 87 2 2 2 2 2 2 48426 21372 1792 21116 32796 42371;42372 42372 2 YSLSGGGTSSH Unmodified 1051.4571 0.45705235 3054 Q9Y6E0-2;Q9Y6E0 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 0 8 0 1 34.841 34.841 2 1.106E-06 7639 TMT1-7 141.93 118.61 7.2256 31.071 21.639 5.9336 22.739 0 7 30 22 7 22 0 1 1 1 1 1 0 1858.6 21373 3054 21117 32797 42373 42373 1 YSLVLELSDSGAFR Unmodified 1555.7882 0.7882229 2697 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein yes yes 0 0 0 0 0 7 0 2 75.343 75.343 2;3 0.00076256 23547 TMT1-6 73.91 43.038 30.689 44.17 34.514 36.654 33.882 60.861 29 44 36 36 36 58 1 1 1 1 1 1 6353.8 21374 2697 21118 32798;32799 42374;42375 42374 2 YSNENLDLAR Unmodified 1193.5677 0.56766543 1042 P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 0 3 0 1 44.184 44.184 2 0.0031882 12962 TMT1-2 96.957 52.579 84.548 131.92 105.38 94.752 90.875 90.149 80 131 109 94 94 87 1 1 1 1 1 1 13258 21375 1042 21119 32800 42376 42376 1 YSNSALGHVNCTIK Unmodified 1562.7511 0.75112588 2708;2709 Q9NQC3-2;Q9NQC3;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 no no 0 0 0 0 0 8 1 1 1 42.694 42.694 3 6.9299E-13 8936 TMT1-8 131.96 96.734 505.26 629.93 568.83 437.08 528.28 723.66 477 633 581 440 548 693 4 4 4 4 4 4 132480 21376 2708;2709 21120 32801;32802 42377;42378;42379;42380 42379 4 YSNSEVVTGSGR Unmodified 1254.584 0.58404378 2079 Q7L576 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 0 0 0 0 0 3 0 1 34.164 34.164 2 1.1966E-13 8969 TMT1-2 175.54 122.67 99.917 76.816 93.739 64.126 70.809 75.797 94 80 94 65 73 73 1 1 1 1 1 1 16935 21377 2079 21121 32803 42381 42381 1 YSPDCIIIVVSNPVDILTYVTWK Unmodified 2694.3979 0.39787649 527 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 0 9 0 1 105.46 105.46 3 2.2713E-10 32935 TMT1-8 75.773 52.871 14.912 21.144 11.649 9.9966 28.161 19.45 14 21 12 10 28 19 2 3 2 2 3 3 2736.1 21378 527 21122 32804 42382;42383;42384 42383 3 YSQFINFPIYVWSSK Unmodified 1877.9352 0.93522148 708 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 0 9 0 2 86.027 86.027 3;4 6.8173E-37 25957 TMT1-8 186.42 143.99 345.44 488.5 317.65 284.7 360.26 428.91 326 486 334 284 371 412 4 4 4 4 4 4 100830 21379 708 21123 32805;32806 42385;42386;42387;42388 42388 4 YSQICAK Unmodified 868.41129 0.41128813 1336 Q5VTU8;P56381 ATP5EP2;ATP5E ATP synthase subunit epsilon-like protein, mitochondrial;ATP synthase subunit epsilon, mitochondrial yes no 0 0 0 0 0 6.5 0.5 1 1 39.926 39.926 2 0.0011791 9996 TMT1-5 98.523 66.588 38.205 43.669 34.121 45.306 39.992 115.05 36 44 36 44 44 109 1 1 1 1 1 1 6072.3 21380 1336 21124 32807;32808 42389;42390 42389 2 YSQLVVETIR Unmodified 1206.6608 0.66083754 2295 Q92522 H1FX Histone H1x yes yes 0 0 0 0 0 5.5 0.5 1 1 56.141 56.141 2 0.00073702 16547 TMT1-5 108.31 76.678 161.41 171.97 136.8 225.48 246.53 256.27 152 174 146 218 254 247 2 2 2 2 2 2 25686 21381 2295 21125 32809;32810 42391;42392 42392 2 YSQTGNYELAVALSR Unmodified 1670.8264 0.82639932 1063 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 0 5 0 1 58.864 58.864 3 0.00079733 17456 TMT1-4 70.802 47.885 145.64 257.23 191.59 96.854 170.84 195.53 138 254 196 102 174 188 2 2 2 2 2 2 11206 21382 1063 21126 32811 42393;42394 42394 2 YSSDEDLPSKLEGFK Unmodified 1713.8097 0.8097462 1306 P55008 AIF1 Allograft inflammatory factor 1 yes yes 0 0 0 0 1 5.67 0.471 1 2 60.351 60.351 3;4 1.3177E-05 18194 TMT1-5 92.935 76.191 374.56 652.42 514.73 373.04 501.64 457.92 355 645 529 378 511 443 3 3 3 3 3 3 65738 21383 1306 21127 32812;32813;32814 42395;42396;42397 42397 3 YSSSFLDSGWR Unmodified 1303.5833 0.5833155 2050 Q6VY07;Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 yes no 0 0 0 0 0 7 0 1 59.92 59.92 2 0.0057454 17454 TMT1-6 85.533 57.365 85.029 78.217 69.934 88.224 143.51 119.56 80 80 73 87 145 116 1 1 1 1 1 1 8670.4 21384 2050 21128 32815 42398 42398 1 YSTDVSVDEVK Unmodified 1240.5823 0.58231244 387 P00367;P00367-3;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 0 3 0.816 1 1 1 49.702 49.702 2;3 1.6357E-11 15121 TMT1-2 169.37 91.697 484.7 648.13 581.83 463.02 676.99 653.33 458 649 595 467 689 631 4 4 4 4 4 4 59721 21385 387 21129 32816;32817;32818 42399;42400;42401;42402 42401 4 YSTHLHLADDCMK Unmodified 1589.6966 0.69664747 1878 Q15833;Q15833-2;Q15833-3 STXBP2 Syntaxin-binding protein 2 yes no 0 0 0 0 0 7 0 1 42.036 42.036 4 0.036836 10382 TMT1-6 40.577 20.481 99.759 91.488 107.77 93.782 134.86 150.72 94 94 109 94 138 145 1 1 1 1 1 1 5844.6 21386 1878 21130 32819 42403 42403 1 YSTLLESEK Unmodified 1068.5339 0.53390569 2798 Q9NZK5;Q9NZK5-2 CECR1 Adenosine deaminase CECR1 yes no 0 0 0 0 0 5 0 1 52.426 52.426 3 0.00058848 14960 TMT1-4 74.165 34.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21387 2798 21131 32820 42404 42404 1 YSVDIPLDK Unmodified 1048.5441 0.54407645 1390 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 0 5 0 1 59.803 59.803 2 0.0091114 17830 TMT1-4 90.15 60.166 130.72 128.84 103.23 141.92 147.04 188.75 123 131 109 138 153 181 1 1 1 1 1 1 15465 21388 1390 21132 32821 42405 42405 1 YSVFFQSLAVVEQEMK Unmodified 1903.939 0.93898623 1810 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 0 8 0 1 91.365 91.365 3 0.0018431 29560 TMT1-7 46.249 26.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21389 1810 21133 32822 42406 42406 1 YSVNEGLVAEIER Unmodified 1477.7413 0.7412727 2234 Q8NHV4-2;Q8NHV4;Q8NHV4-3 NEDD1 Protein NEDD1 yes no 0 0 0 0 0 3 0 1 60.474 60.474 2 0.0023121 19385 TMT1-2 62.528 27.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21390 2234 21134 32823 42407 42407 1 YSVWIGGSILASLSTFQQMWISK Oxidation (M) 2617.325 0.32504589 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 0 0 1 0 0 9 0 2 104.08 104.08 4 9.0057E-07 32395 TMT1-8 62.684 42.059 14.779 30.676 14.792 10.945 25.657 30.182 14 30 15 11 26 29 2 2 1 1 2 2 3962.8 21391 1357;1479;1488;1952 21135 32824;32825 42408;42409 42408 223 2 YSVWIGGSILASLSTFQQMWISK Unmodified 2601.3301 0.33013127 1357;1479;1488;1952 P60709;P63267-2;P63261;P68032;P63267;P62736;Q562R1 ACTB;ACTG2;ACTG1;ACTC1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 0 9 0 1 110.62 110.62 4 0.013702 34267 TMT1-8 34.217 25.033 0 4.1364 7.1558 3.8158 6.8972 7.2652 0 4 7 4 7 7 0 1 1 1 1 1 939.81 21392 1357;1479;1488;1952 21135 32826 42410 42410 1 YSYQYTVANK Unmodified 1235.5823 0.58225287 2355 Q969X5;Q969X5-2 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 0 6 0 1 46.55 46.55 3 0.0010606 12767 TMT1-5 90.827 65.972 170.07 179.14 118.09 76.127 227.28 133.16 160 181 123 80 225 131 1 1 1 1 1 1 8201.7 21393 2355 21136 32827 42411 42411 1 YSYVCPDLVK Unmodified 1242.5955 0.59546009 1379 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 0 6.5 0.5 1 1 57.519 57.519 3 0.00075547 16480 TMT1-6 94.692 79.153 634.91 1215.1 1005.1 867.32 910.34 1053.9 603 1198 1035 864 943 1013 4 4 4 4 4 4 155200 21394 1379 21137 32828;32829 42412;42413;42414;42415 42415 4 YTAESSDTLCPR Unmodified 1398.6085 0.60854397 2741 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 0 3 0 1 40.283 40.283 2 4.4445E-08 11405 TMT1-2 131.28 117.48 23.283 21.232 36.256 29.286 13.296 30.535 22 22 36 29 15 29 1 1 1 1 1 1 4887.7 21395 2741 21138 32830 42416 42416 1 YTAQVDAEEKEDVK Unmodified 1623.7628 0.76279601 316 O75947 ATP5H ATP synthase subunit d, mitochondrial yes yes 0 0 0 0 1 3.5 0.5 1 1 43.634 43.634 3 5.8331E-08 12911 TMT1-2 96.414 85.946 246.9 181.3 188.17 167.23 216.98 219.8 232 189 192 167 222 212 1 1 1 1 1 1 17975 21396 316 21139 32831;32832 42417;42418 42417 2 YTAVSSFIFLR Unmodified 1302.6972 0.69722304 1786 Q14644;Q14644-2 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 0 0 9 0 1 73.366 73.366 2 2.6481E-09 20972 TMT1-8 147.4 98.308 37.974 81.882 40.516 44.618 56.294 67.684 36 80 44 44 58 65 1 1 1 1 1 1 13616 21397 1786 21140 32833 42419 42419 1 YTCHVQHEGLPEPLTLR Unmodified 2049.0102 0.010194116 426 P01893 HLA-H Putative HLA class I histocompatibility antigen, alpha chain H yes yes 0 0 0 0 0 5 0 1 45.62 45.62 4 0.0022 12237 TMT1-4 54.292 44.235 107.5 192.16 164.3 121.29 178.33 218.77 102 190 168 123 183 210 1 1 1 1 1 1 17365 21398 426 21141 32834 42420 42420 1 YTCHVQHEGLPK Unmodified 1467.6929 0.69288272 425;474 P04439;P04439-2;P01889 HLA-A;HLA-B HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 0 0 0 0 0 8 0 1 33.165 33.165 4 0.0037081 6972 TMT1-7 65.395 61.554 77.657 47.817 72.435 73.858 85.826 51.917 73 51 73 73 87 51 1 1 1 1 1 1 5905.3 21399 474;425 21142 32835 42421 42421 1 YTCHVQHEGLPKPLTLR Unmodified 2048.0626 0.062564037 425;474 P04439;P04439-2;P01889 HLA-A;HLA-B HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 0 0 0 0 1 8 0 1 41.897 41.897 5 9.1082E-10 10399 TMT1-7 105.89 96.098 1102 1317.3 1217.1 994.32 1331.7 1680.4 1040 1327 1244 999 1372 1612 1 1 1 1 1 1 166670 21400 474;425 21143 32836 42422 42422 1 YTCICYEGYR Unmodified 1383.5588 0.55875701 1797 Q14766;Q14766-4;Q14766-2;Q14766-5;Q14766-3 LTBP1 Latent-transforming growth factor beta-binding protein 1 yes no 0 0 0 0 0 4.33 0.471 2 1 48.067 48.067 2;3 2.6736E-06 13473 TMT1-3 157.96 151.79 490.36 736.17 638.55 527.87 652.32 767.03 464 733 655 529 672 737 4 4 4 4 4 4 135190 21401 1797 21144 32837;32838;32839 42423;42424;42425;42426 42423 4 YTDLVAIQNK Unmodified 1163.6186 0.61863837 733 P16109 SELP P-selectin yes yes 0 0 0 0 0 6.33 0.471 2 1 56.725 56.725 2;3 0.0045266 16736 TMT1-5 74.162 32.879 276.13 346.6 365.99 297.27 352.29 400.36 261 349 371 298 363 385 3 3 3 3 3 3 167420 21402 733 21145 32840;32841;32842 42427;42428;42429 42428 3 YTDLVAIQNKNEIDYLNK Unmodified 2153.1004 0.10044891 733 P16109 SELP P-selectin yes yes 0 0 0 0 1 7 0 1 64.833 64.833 3 3.248E-24 19381 TMT1-6 122.01 92.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21403 733 21146 32843 42430 42430 1 YTDNKFNPK Unmodified 1125.5455 0.54547343 50 O00194 RAB27B Ras-related protein Rab-27B yes yes 0 0 0 0 1 7.5 0.5 2 2 41.77 41.77 3;4 0.0042241 10394 TMT1-6 85.958 56.659 1062.1 1314.9 1265.9 976.46 790.4 1781.1 1003 1323 1288 976 857 1692 5 5 5 5 5 5 106930 21404 50 21147 32844;32845;32846;32847 42431;42432;42433;42434;42435 42432 5 YTEEEHK Unmodified 934.40323 0.40322587 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 0 2.5 0.5 1 1 27.771 27.771 3 0.0096798 6385 TMT1-2 81.784 45.598 84.653 139.77 81.099 94.792 165.69 134.92 80 138 87 94 167 131 2 2 2 2 2 2 7439.6 21405 2753 21148 32848;32849 42436;42437 42437 2 YTEEEHKATEK Unmodified 1363.6256 0.62557424 2753 Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes yes 0 0 0 0 1 3.5 0.5 1 1 32.337 32.337 4 3.3227E-06 7171 TMT1-3 123.01 100.46 333.11 587.12 323.83 403.17 608.84 707.51 315 578 350 397 623 680 2 2 2 2 2 2 36959 21406 2753 21149 32850;32851 42438;42439 42439 2 YTELPYGR Unmodified 997.4869 0.48689592 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 0 4 0 1 45.614 45.614 2 0.036704 12497 TMT1-3 78.324 49.425 115.09 143.31 191.7 81.241 128.92 127.44 109 145 189 87 131 123 1 1 1 1 1 1 36307 21407 889 21150 32852 42440 42440 1 YTELPYGREDVLK Unmodified 1581.8039 0.80387296 889 P25774;P25774-2 CTSS Cathepsin S yes no 0 0 0 0 1 5 0 1 53.12 53.12 3 0.00077646 15235 TMT1-4 68.277 42.153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21408 889 21151 32853 42441 42441 1 YTEQITNEK Unmodified 1124.535 0.53496832 1902 Q16718-2;Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 0 4 0 1 41.529 41.529 3 0.0063802 10910 TMT1-3 72.848 50.206 138.73 200.08 137.67 146.22 215.94 186.78 131 199 145 145 219 181 1 1 1 1 1 1 11184 21409 1902 21152 32854 42442 42442 1 YTFAAHMDGTYK Unmodified 1403.618 0.61798644 1842 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 yes yes 0 0 0 0 0 7 0 1 48.525 48.525 3 8.9437E-09 12954 TMT1-6 130.56 108.33 184.54 230.53 168.11 169.68 150.71 257.94 174 231 176 167 160 246 1 1 1 1 1 1 19676 21410 1842 21153 32855 42443 42443 1 YTFAPSVSLNK Unmodified 1225.6343 0.63428844 2718 Q9NR12;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 0 8.5 0.5 1 1 59.51 59.51 2 3.2606E-23 17382 TMT1-7 195.36 132.81 161.86 141.92 86.713 151.44 99.687 214.62 152 145 95 145 109 204 2 2 2 2 2 2 24079 21411 2718 21154 32856;32857 42444;42445 42444 2 YTFQDFTEQFQVLLPK Unmodified 2003.004 0.0040293305 1707 Q13459-2;Q13459 MYO9B Unconventional myosin-IXb yes no 0 0 0 0 0 9 0 1 90.497 90.497 3 0.00015308 27617 TMT1-8 66.568 46.187 7.1949 38.541 20.456 22.428 21.197 22.847 7 37 22 22 22 22 1 1 1 1 1 1 3587.2 21412 1707 21155 32858 42446 42446 1 YTGTLDCAK Unmodified 1027.4644 0.46444592 202 O43772 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes yes 0 0 0 0 0 5 0 1 42.811 42.811 3 0.006365 11146 TMT1-4 72.879 35.158 115.5 168.19 101.99 118.48 118.28 143.73 109 167 109 116 123 138 1 1 1 1 1 1 12290 21413 202 21156 32859 42447 42447 1 YTIAALLSPYSYSTTAVVTIPK Unmodified 2358.2723 0.27226527 1984 Q5U7I5 yes yes 0 0 0 0 0 9 0 2 81.371 81.371 3;4 4.6074E-05 24145 TMT1-8 58.49 36.891 123.1 160.36 94.79 119.7 134.73 119.81 116 160 102 117 138 116 3 3 3 3 3 3 9142.2 21414 1984 21157 32860;32861 42448;42449;42450 42450 3 YTIAALLSPYSYSTTAVVTNPKE Unmodified 2488.2737 0.27372183 446 P02766 TTR Transthyretin yes yes 0 0 0 0 1 9 0 2 82.058 82.058 3;4 0.00030633 24344 TMT1-8 47.058 38.126 62.5 95.957 54.361 76.434 69.987 83.283 59 95 59 73 73 80 2 2 2 1 2 2 32726 21415 446 21158 32862;32863 42451;42452 42451 2 YTIENPR Unmodified 891.44503 0.4450311 2071 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 0 3.5 0.5 1 1 36.646 36.646 2 0.0034295 8708 TMT1-3 86.794 39.749 99.487 138.22 113.95 62.103 114.35 120.39 94 138 116 65 116 116 1 1 1 1 1 1 90443 21416 2071 21159 32864;32865 42453;42454 42454 2 YTIHSQLEHLQSK Unmodified 1582.8104 0.81035532 2560 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 0 0 0 0 0 7 0 1 42.287 42.287 4 5.0776E-05 10485 TMT1-6 96.866 91.864 61.087 78.895 125.96 46.751 78.937 75.565 58 80 123 51 80 73 1 1 1 1 1 1 7622.2 21417 2560 21160 32866 42455 42455 1 YTILIKYGGDEIPFSPYR Unmodified 2131.099 0.098992348 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 1 9 0 1 72.227 72.227 3 9.3119E-27 20535 TMT1-8 141.07 109 139.46 81.206 117.15 62.479 84.224 113.79 131 87 116 65 87 109 1 1 1 1 1 1 25699 21418 831 21161 32867 42456 42456 1 YTISQEAYDQR Unmodified 1372.6259 0.62590859 2461 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 0 3 0 1 42.906 42.906 2 3.9817E-23 12445 TMT1-2 193.21 156.81 60.793 133.12 129.31 92.906 113.19 112.96 58 131 131 94 116 109 1 1 1 1 1 1 24520 21419 2461 21162 32868 42457 42457 1 YTIVVSATASDAAPLQYLAPYSGCSMGEYFR Unmodified 3387.5792 0.57916468 888 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 0 8 0 1 85.92 85.92 4 3.9192E-06 27615 TMT1-7 58.11 53.204 23.38 29.056 13.344 22.995 13.585 30.526 22 29 15 22 15 29 1 1 1 1 1 1 9536.3 21420 888 21163 32869 42458 42458 1 YTLFQIFSK Unmodified 1145.6121 0.61209643 471 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 0 9 0 1 78.978 78.978 2 0.00017958 23142 TMT1-8 144.65 83.677 190.17 401.8 338.67 311.58 375.5 466.85 181 395 349 310 388 448 2 2 2 2 2 2 53852 21421 471 21164 32870 42459;42460 42459 2 YTLNILEEIGGGQK Unmodified 1533.8039 0.80387296 690 P13796;P13796-2 LCP1 Plastin-2 yes no 0 0 0 0 0 6.5 0.5 1 1 74.763 74.763 3 2.3052E-19 23262 TMT1-6 165.02 133.14 694.96 915.64 725.02 629.37 792.89 863.22 656 916 750 629 814 831 3 3 3 3 3 3 214360 21422 690 21165 32871;32872 42461;42462;42463 42462 3 YTLNVLEDLGDGQK Unmodified 1563.7781 0.77805214 691 P13797-3;P13797-2;P13797 PLS3 Plastin-3 yes no 0 0 0 0 0 5 0 1 72.379 72.379 3 1.3048E-05 22812 TMT1-4 97.417 69.754 37.854 89.103 54.587 59.094 55.628 67.703 36 87 58 58 58 65 1 1 1 1 1 1 8541.8 21423 691 21166 32873 42464 42464 1 YTMEINTR Unmodified 1026.4804 0.48043033 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 4 0 1 42.946 42.946 2 0.0036816 11488 TMT1-3 78.334 47.598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21424 772 21167 32874 42465 42465 1 YTPEEIAMATVTALR Unmodified 1664.8444 0.84435757 609 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 0 7 0 1 80.837 80.837 3 0.0059972 25631 TMT1-6 54.501 42.14 23.279 21.221 36.953 13.648 28.93 22.626 22 22 36 15 29 22 1 1 1 1 1 1 4540.5 21425 609 21168 32875 42466 42466 1 YTPSGQAGAAASESLFVSNHAY Unmodified 2227.0182 0.018175845 459 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 0 6.2 1.17 2 1 1 1 59.538 59.538 3 6.5658E-37 17120 TMT1-6 149.82 131.76 431.15 581.73 441.56 379.7 379.25 571.21 407 581 458 378 398 546 8 8 8 8 8 8 250320 21426 459 21169 32876;32877;32878;32879;32880 42467;42468;42469;42470;42471;42472;42473;42474 42471 8 YTPVQQGPVGVNVTYGGDPIPK Unmodified 2285.1692 0.16919718 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 4.75 2.17 1 3 63.134 63.134 3;4;5 8.2556E-37 19228 TMT1-5 148.56 147.13 1192 1430.6 1333.7 958.84 1105.2 1319.1 1125 1441 1357 969 1142 1267 5 5 5 5 5 5 802640 21427 831 21170 32881;32882;32883;32884 42475;42476;42477;42478;42479 42476 5 YTQELTLK Unmodified 994.53351 0.53351176 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 0 6 0 1 51.608 51.608 2 0.0041226 14805 TMT1-5 127.3 22.863 422.47 442.65 394.83 305.48 231.39 498.68 398 449 404 305 251 474 1 1 1 1 1 1 46144 21428 856 21171 32885 42480 42480 1 YTQELTLKR Unmodified 1150.6346 0.63462279 856 P23229-4;P23229-2;P23229-9;P23229-6;P23229-5;P23229-3;P23229;P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 yes no 0 0 0 0 1 7 0 1 43.533 43.533 3 0.035475 10952 TMT1-6 55.754 47.241 227.6 283.2 280.7 262.49 205.45 367.24 215 285 287 259 220 350 1 1 1 1 1 1 14969 21429 856 21172 32886 42481 42481 1 YTQSNSVCYAK Unmodified 1319.5816 0.58160094 981 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 0 6 0 1 40.453 40.453 2 3.5708E-22 10363 TMT1-5 159.94 118.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21430 981 21173 32887 42482 42482 1 YTQVGPDHNR Unmodified 1185.5527 0.55268407 1619 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 0 3 0 1 25.955 25.955 3 0.00012631 5807 TMT1-2 110.88 96.89 26.348 40.009 46.337 44.533 42.409 45.694 25 40 47 44 44 44 1 1 1 1 1 1 12929 21431 1619 21174 32888 42483 42483 1 YTSLMLR Unmodified 882.46332 0.4633237 250 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 0 8 0 1 51.238 51.238 2 0.0057733 14141 TMT1-7 133.47 44.826 468.87 715.79 480.78 383.29 412.71 749.35 443 710 502 384 436 714 2 2 2 2 2 2 64488 21432 250 21175 32889 42484;42485 42485 2 YTTLIAK Unmodified 808.46945 0.46945494 2857 Q9UGI8-2;Q9UGI8 TES Testin yes no 0 0 0 0 0 8 0 1 51.446 51.446 2 0.0079653 14233 TMT1-7 121.52 35.671 307.39 411.78 287.12 349.23 338.97 322.92 290 411 304 341 350 312 2 2 2 2 2 2 48261 21433 2857 21176 32890 42486;42487 42487 2 YTVGGLETFDSLTDLVEHFK Unmodified 2270.1107 0.11067925 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 0 7 0 2 89.082 89.082 3;4 9.7502E-31 28781 TMT1-6 144.17 118.85 93.184 116.37 109.78 112.98 154 116.06 88 117 113 112 156 113 3 3 3 3 3 3 25118 21434 936 21177 32891;32892 42488;42489;42490 42489 3 YTVGGLETFDSLTDLVEHFKK Unmodified 2398.2056 0.20564226 936 P29350;P29350-3;P29350-4;P29350-2 PTPN6 Tyrosine-protein phosphatase non-receptor type 6 yes no 0 0 0 0 1 7.5 0.5 1 1 82.552 82.552 4 1.3285E-31 26365 TMT1-7 150.45 134.94 337.68 463.48 381.53 342.71 386.21 448.43 319 463 394 341 399 431 4 4 4 4 4 4 64457 21435 936 21178 32893;32894 42491;42492;42493;42494 42494 4 YTVSVFAK Unmodified 913.49092 0.49091866 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 8.5 0.5 2 2 56.275 56.275 2;3 0.0014459 14198 TMT1-8 144.38 95.017 533.47 689.52 645.72 497.85 540.34 687.08 504 692 658 500 561 659 5 5 5 5 5 5 43418 21436 1601 21179 32895;32896;32897;32898 42495;42496;42497;42498;42499 42497 5 YTYEHDPITK Unmodified 1265.5928 0.59281755 1091 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 0 4 0 1 41.014 41.014 3 0.0093237 10707 TMT1-3 64.82 42.774 200.1 307.81 192.6 169.97 231.73 212.98 189 305 203 170 236 206 1 1 1 1 1 1 20099 21437 1091 21180 32899 42500 42500 1 YVAAAFPSACGK Unmodified 1240.591 0.59104341 1908 Q16822;Q16822-3;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 0 8 0 1 53.586 53.586 3 0.00045471 15075 TMT1-7 85.958 68.933 84.928 109.23 60.737 58.609 61.917 98.437 80 109 65 58 65 94 1 1 1 1 1 1 16090 21438 1908 21181 32900 42501 42501 1 YVALTSLLK Unmodified 1006.6063 0.60628277 199 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 0 9 0 1 70.283 70.283 2 2.1088E-06 19750 TMT1-8 163.99 96.953 192.16 240.05 140.79 186.37 221.4 156.78 181 240 152 182 225 153 2 2 2 2 2 2 34669 21439 199 21182 32901 42502;42503 42502 2 YVANLFPYK Unmodified 1113.5859 0.58588168 1834 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 0 9 0 2 64.839 64.839 2;3 0.00015613 17864 TMT1-8 147.34 0 368.36 531.38 397.34 403.08 496.85 496.44 348 529 415 399 509 479 5 5 5 5 5 5 47843 21440 1834 21183 32902;32903 42504;42505;42506;42507;42508 42506 5 YVASYLLAALGGNSSPSAK Unmodified 1867.968 0.96797818 495 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 0 9 0 2 81.42 81.42 3;4 7.8437E-22 24165 TMT1-8 133.78 103.72 338.11 586.81 385.78 396.86 457.61 550.86 320 579 407 392 473 529 4 4 4 4 4 4 125370 21441 495 21184 32904;32905 42509;42510;42511;42512 42510 4 YVATLGVEVHPLVFHTNR Unmodified 2051.0952 0.095244374 1445 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 0 8.5 0.5 1 1 56.544 56.544 4 7.9132E-25 16222 TMT1-7 142.26 126.12 206.77 366.48 283.67 207.57 327.05 280.62 196 362 292 211 331 272 2 2 2 2 2 2 112300 21442 1445 21185 32906;32907 42513;42514 42513 2 YVAVELK Unmodified 820.46945 0.46945494 2528 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 0 6 0 1 53.045 53.045 2 0.0081007 15344 TMT1-5 119.89 47.654 292.45 507.11 372.7 390.08 336.26 682.24 277 501 390 383 361 649 1 1 1 1 1 1 27662 21443 2528 21186 32908 42515 42515 1 YVAVMPPHIGDQPLTGAYTVTLDGR Unmodified 2670.3476 0.34757225 946 P30043 BLVRB Flavin reductase (NADPH) yes yes 0 0 0 0 0 7 0 1 68.582 68.582 3 4.5623E-19 20888 TMT1-6 106.43 99.636 15.845 14.393 29.801 14.228 20.768 46.311 15 15 29 15 22 44 1 1 1 1 1 1 8607.1 21444 946 21187 32909 42516 42516 1 YVCQEGFESPGGK Unmodified 1456.6293 0.62927941 2047 Q6UWL2-3;Q6UWL2;Q6UWL2-2 SUSD1 Sushi domain-containing protein 1 yes no 0 0 0 0 0 5 0 1 48.372 48.372 3 4.5544E-05 13363 TMT1-4 77.912 60.048 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21445 2047 21188 32910 42517 42517 1 YVDIAIPCNNK Unmodified 1305.6387 0.63872189 579 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 0 6 0 2 57.468 57.468 2;3 0.0023872 17070 TMT1-5 93.098 61.676 277.18 447.93 282.78 231.14 355.08 407.74 262 443 297 233 363 392 3 3 3 3 3 3 48891 21446 579 21189 32911;32912 42518;42519;42520 42520 3 YVDILPYDYNR Unmodified 1429.6878 0.68778057 570 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 PTPRC Receptor-type tyrosine-protein phosphatase C yes no 0 0 0 0 0 5 0 2 64.871 64.871 2;3 1.3347E-06 19810 TMT1-4 140.17 92.316 169.59 193.98 187.02 111.84 202.09 148.8 160 196 189 116 203 145 2 2 2 2 2 2 67540 21447 570 21190 32913;32914 42521;42522 42521 2 YVDKLEK Unmodified 893.48583 0.48583328 1122 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 1 6 0 1 43.421 43.421 3 0.038478 11538 TMT1-5 66.073 21.381 164.69 526.44 368.28 307.75 427.38 545.32 158 511 383 309 440 523 1 1 1 1 1 1 17460 21448 1122 21191 32915 42523 42523 1 YVDLGGSYVGPTQNR Unmodified 1624.7845 0.7845345 908 P27338;P27338-2 MAOB Amine oxidase [flavin-containing] B yes no 0 0 0 0 0 5 0 1 53.606 53.606 3 5.9451E-08 15411 TMT1-4 111.88 75.46 68.746 78.795 101.07 94.738 105.26 128.11 65 80 102 94 109 123 1 1 1 1 1 1 23133 21449 908 21192 32916 42524 42524 1 YVDLGLGTHR Unmodified 1129.588 0.58800695 1999 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 0 0 6 0 1 45.893 45.893 3 0.020758 12525 TMT1-5 54.259 40.58 84.838 108.99 75.989 80.919 105.9 128.1 80 109 80 80 109 123 1 1 1 1 1 1 9273 21450 1999 21193 32917 42525 42525 1 YVDMSVK Unmodified 840.40514 0.40514012 1148 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 0 6 0 1 48.979 48.979 2 0.008327 13741 TMT1-5 117.16 103.17 170.48 501.37 317.06 227.56 204.28 356.61 163 487 331 229 217 340 1 1 1 1 1 1 31611 21451 1148 21194 32918 42526 42526 1 YVDQVLQLVYK Unmodified 1366.7497 0.74965254 659 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 0 8 0 1 78.328 78.328 3 0.0021902 24743 TMT1-7 77.64 44.232 23.146 59.705 26.708 21.789 35.372 37.367 22 58 29 22 36 36 1 1 1 1 1 1 4582.8 21452 659 21195 32919 42527 42527 1 YVDTPFGKPSDALILGK Unmodified 1819.972 0.97200092 1672 Q13126-4;Q13126;Q13126-3;Q13126-2;Q13126-7;Q13126-6;Q13126-5 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 1 8 0 2 67.271 67.271 3;4 1.4672E-18 20395 TMT1-7 132.59 104.38 222.44 277.68 249.8 211.33 234.29 387.73 210 279 256 211 246 370 2 2 2 2 2 2 45935 21453 1672 21196 32920;32921 42528;42529 42528 2 YVECSALTQK Unmodified 1197.57 0.56997362 1363 P60953 CDC42 Cell division control protein 42 homolog yes yes 0 0 0 0 0 4.25 1.92 1 2 1 47.455 47.455 2;3 0.00014214 12947 TMT1-5 108.43 85.136 553.54 921.62 683.33 528.83 633.93 844.3 524 912 707 532 657 809 5 5 5 5 5 5 162880 21454 1363 21197 32922;32923;32924;32925 42530;42531;42532;42533;42534 42533 5 YVEGIVHLFYQR Unmodified 1522.7932 0.79324869 772 P18054 ALOX12 Arachidonate 12-lipoxygenase, 12S-type yes yes 0 0 0 0 0 8 0 1 68.821 68.821 3 6.0517E-09 21002 TMT1-7 136.96 108.19 99.64 107.35 114.37 94.241 89.58 128.56 94 109 116 94 94 123 1 1 1 1 1 1 52201 21455 772 21198 32926 42535 42535 1 YVEKLEALFPDLPK Unmodified 1660.9076 0.90760975 2103 Q86TP1;Q86TP1-2;Q86TP1-5;Q86TP1-4;Q86TP1-3 PRUNE Protein prune homolog yes no 0 0 0 0 1 8 0 2 78.346 78.346 3;4 1.5211E-05 24690 TMT1-7 97.551 69.903 116.02 107.03 67.201 82.977 82.475 137.29 109 109 72 81 87 131 2 2 2 2 2 2 8343.3 21456 2103 21199 32927;32928 42536;42537 42536 2 YVELFLNSTAGASGGAYEHR Unmodified 2141.0178 0.017781914 983 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 0 7 0 1 63.425 63.425 3 1.3168E-05 18856 TMT1-6 75.057 59.292 23.148 59.71 26.385 29.047 57.266 60.194 22 58 29 29 58 58 1 1 1 1 1 1 15052 21457 983 21200 32929 42538 42538 1 YVEPIEDVPCGNIVGLVGVDQFLVK Unmodified 2758.4252 0.42515387 685 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 0 6.67 0.471 1 2 89.985 89.985 3;4 2.4561E-19 29564 TMT1-5 109.75 96.566 130.42 186.3 104.42 135.03 102.71 148.44 123 185 113 131 109 142 4 4 4 4 4 4 51162 21458 685 21201 32930;32931;32932 42539;42540;42541;42542 42539 4 YVEVSPATER Unmodified 1149.5666 0.5666028 2747 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 0 3 0 1 40.677 40.677 2 0.00031919 11559 TMT1-2 123.35 86.798 53.831 103.86 61.895 43.358 55.546 91.157 51 102 65 44 58 87 1 1 1 1 1 1 9639.2 21459 2747 21202 32933 42543 42543 1 YVGETDFAK Unmodified 1028.4815 0.48147619 2851 Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 0 0 0 0 5 0 1 50.242 50.242 2 0.024893 14071 TMT1-4 76.064 67.532 115.88 114.21 83.832 64.323 91.725 106.11 109 116 87 65 94 102 1 1 1 1 1 1 7628.8 21460 2851 21203 32934 42544 42544 1 YVGETQPTGQIK Unmodified 1319.6721 0.67213051 3006 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 0 5 0 1 44.125 44.125 2 7.5869E-26 11656 TMT1-4 203.8 190.42 115.24 184.73 132.13 123.92 140.55 158.02 109 183 138 123 145 152 1 1 1 1 1 1 32366 21461 3006 21204 32935 42545 42545 1 YVGGQEHFAHLLILR Unmodified 1751.9471 0.94712357 444 P02763 ORM1 Alpha-1-acid glycoprotein 1 yes yes 0 0 0 0 0 8 0 1 54.104 54.104 4 1.0505E-06 15252 TMT1-7 103.13 85.733 108.25 130.58 89.726 80.835 66.853 168.65 102 131 94 80 73 160 1 1 1 1 1 1 19647 21462 444 21205 32936 42546 42546 1 YVGKEPSGLR Unmodified 1104.5928 0.59275797 334 O94925;O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 1 7 0 1 37.667 37.667 3 0.0011336 8651 TMT1-6 74.849 45.075 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21463 334 21206 32937 42547 42547 1 YVGVSSDSVGGFR Unmodified 1328.6361 0.63607935 1789 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 0 5 0 1 50.956 50.956 2 7.5093E-21 14383 TMT1-4 149.17 140.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21464 1789 21207 32938 42548 42548 1 YVHDDGR Unmodified 860.37768 0.37767982 215 O60234 GMFG Glia maturation factor gamma yes yes 0 0 0 0 0 2.5 0.5 1 1 21.257 21.257 3 0.0014179 3751 TMT1-1 129.39 42.108 77.296 100.78 88.282 84.042 133.36 85.739 73 101 91 84 134 84 3 3 3 3 3 3 13645 21465 215 21208 32939;32940 42549;42550;42551 42549 3 YVHLFPK Unmodified 902.50142 0.50142377 293 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 0 9 0 1 49.703 49.703 3 0.014629 11666 TMT1-8 64.866 31.745 115.92 106.77 83.228 87.895 118.88 167.17 109 109 87 87 123 160 1 1 1 1 1 1 9385.9 21466 293 21209 32941 42552 42552 1 YVHQLFSQHYR Unmodified 1476.7262 0.72623176 1734 Q13637 RAB32 Ras-related protein Rab-32 yes yes 0 0 0 0 0 9 0 1 39.819 39.819 4 0.00020422 8071 TMT1-8 87.789 73.098 84.695 101.03 106.85 103.26 98.604 97.39 80 102 109 102 102 94 1 1 1 1 1 1 5042.3 21467 1734 21210 32942 42553 42553 1 YVIGVGDAFR Unmodified 1095.5713 0.57129425 647 P11215;P11215-2 ITGAM Integrin alpha-M yes no 0 0 0 0 0 6.5 0.5 1 1 59.901 59.901 2 0.0016104 18018 TMT1-5 72.038 30.386 130.09 189.69 157.38 83.17 135.1 158.18 123 189 160 87 138 152 1 1 1 1 1 1 25629 21468 647 21211 32943;32944 42554;42555 42554 2 YVILDIPLLFETK Unmodified 1562.896 0.89598243 2271 Q8WVC6 DCAKD Dephospho-CoA kinase domain-containing protein yes yes 0 0 0 0 0 8 0 1 95.444 95.444 3 0.00029478 31080 TMT1-7 84.718 70.812 16.02 14.88 0 7.0964 29.488 15.149 15 15 0 7 29 15 1 1 0 1 1 1 1099.8 21469 2271 21212 32945 42556 42556 1 YVIVSSK Unmodified 794.4538 0.45380487 251 O75116 ROCK2 Rho-associated protein kinase 2 yes yes 0 0 0 0 0 8 0 1 46.85 46.85 2 0.033862 12331 TMT1-7 88.942 60.43 184.69 216.92 154.03 115.54 109.95 177.02 174 218 160 116 116 169 1 1 1 1 1 1 14620 21470 251 21213 32946 42557 42557 1 YVLDDEYTSSVGSK Unmodified 1561.7148 0.71478318 1601 Q06187;Q06187-2 BTK Tyrosine-protein kinase BTK yes no 0 0 0 0 0 4 0 1 56.327 56.327 3 8.6893E-15 16737 TMT1-3 135.58 112.58 262.69 195.52 228.45 213.66 178.22 250.75 247 204 232 211 188 240 2 2 2 2 2 2 33776 21471 1601 21214 32947 42558;42559 42558 2 YVLEPEISFTSDNSFAK Unmodified 1945.9309 0.93092397 2789 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 0 6 0 1 73.361 73.361 3 1.4545E-35 23306 TMT1-5 184.02 172.67 92.293 100.76 92.372 87.713 99.539 90.968 87 102 95 87 102 88 2 2 2 2 2 2 18113 21472 2789 21215 32948 42560;42561 42560 2 YVLHCQGTEEEK Unmodified 1491.6664 0.6663932 1439 P62495-2;P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 0 4 0 1 36.796 36.796 3 4.9582E-06 9052 TMT1-3 113.61 96.884 139.01 158.75 126.36 115.73 187.77 134.29 131 160 131 116 189 131 1 1 1 1 1 1 18044 21473 1439 21216 32949 42562 42562 1 YVLINWVGEDVPDAR Unmodified 1744.8784 0.87843489 1897 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 0 6 0 1 74.929 74.929 3 2.37E-17 23969 TMT1-5 147.39 137.6 61.288 87.009 85.336 73.374 70.677 67.273 58 87 87 73 73 65 1 1 1 1 1 1 56087 21474 1897 21217 32950 42563 42563 1 YVLNFLEVHDK Unmodified 1375.7136 0.71360139 1628 Q08AF3;Q08AF3-2 SLFN5 Schlafen family member 5 yes no 0 0 0 0 0 7 0 1 65.169 65.169 3 0.00041076 19495 TMT1-6 94.538 81.11 84.403 146.63 117.2 149.58 102.19 144.19 80 145 123 145 109 138 1 1 1 1 1 1 15393 21475 1628 21218 32951 42564 42564 1 YVNSIWDLLK Unmodified 1249.6707 0.67067394 1730 Q13618;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 0 0 9 0 2 83.135 83.135 2;3 4.0969E-06 24766 TMT1-8 146.11 104.92 37.957 65.646 57.073 34.87 57.255 52.732 36 65 58 36 58 51 1 1 1 1 1 1 6588.3 21476 1730 21219 32952;32953 42565;42566 42565 2 YVPAIAHLIHSLNPVR Unmodified 1799.0206 0.020622868 2635 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 0 9 0 1 66.388 66.388 4 1.3167E-08 18233 TMT1-8 106.58 93.459 23.15 59.716 26.012 37.417 20.251 30.336 22 58 29 36 22 29 1 1 1 1 1 1 6862.2 21477 2635 21220 32954 42567 42567 1 YVPLADVK Unmodified 903.50657 0.50656873 1090 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 0 6 0 1 54.896 54.896 2 0.0020237 16049 TMT1-5 138.9 72.808 95.883 552.36 368.7 392.74 440.26 543.89 94 531 388 387 456 522 1 1 1 1 1 1 64119 21478 1090 21221 32955 42568 42568 1 YVPTPFVPYAVQK Unmodified 1507.8075 0.80750177 2036 Q6PCE3 PGM2L1 Glucose 1,6-bisphosphate synthase yes yes 0 0 0 0 0 9 0 1 68.575 68.575 3 0.0015802 19121 TMT1-8 63.727 34.399 54.207 64.974 31.74 68.258 47.585 76.46 51 65 36 65 51 73 1 1 1 1 1 1 7757.8 21479 2036 21222 32956 42569 42569 1 YVQELAAVR Unmodified 1047.5713 0.57129425 1805 Q14980-2;Q14980;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 0 5 0 1 50.179 50.179 2 0.032358 14062 TMT1-4 73.067 36.881 68.691 109.94 83.943 72.915 99.45 113.36 65 109 87 73 102 109 1 1 1 1 1 1 8634.4 21480 1805 21223 32957 42570 42570 1 YVQGDAIGYEGFQQFLK Unmodified 1961.9523 0.95232811 869 P23743;P23743-3;P23743-2 DGKA Diacylglycerol kinase alpha yes no 0 0 0 0 0 7 0 1 75.159 75.159 3 1.9087E-05 23433 TMT1-6 79.311 55.875 37.648 112.28 69.48 57.921 70.838 83.259 36 109 73 58 73 80 1 1 1 1 1 1 14674 21481 869 21224 32958 42571 42571 1 YVQHTYR Unmodified 965.47191 0.47191456 1269 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes yes 0 0 0 0 0 5.14 2.36 1 2 1 1 1 1 25.014 25.014 3 0.0013238 4297 TMT1-4 130.77 100.58 564.18 648.3 568.89 501.52 530.87 592.47 532 654 585 499 549 570 13 13 13 13 13 13 82220 21482 1269 21225 32959;32960;32961;32962;32963;32964;32965 42572;42573;42574;42575;42576;42577;42578;42579;42580;42581;42582;42583;42584;42585 42579 14 YVQLPADEVDTQLLQDAAR Unmodified 2144.075 0.074962442 2983 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 0 0 4 0 1 71.476 71.476 3 1.3789E-23 22677 TMT1-3 137.13 115.81 61.332 87.133 77.747 73.536 86.082 75.362 58 87 80 73 88 73 2 2 2 2 2 2 32888 21483 2983 21226 32966 42586;42587 42586 2 YVRPGGGFEPNFMLFEK Unmodified 1986.9662 0.96620404 528 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 0 1 8.5 0.5 1 1 68.355 68.355 3 4.2977E-07 20809 TMT1-7 93.754 73.916 223.41 297.82 250.73 138.85 249.19 294.57 211 298 255 145 254 283 3 3 3 3 3 3 39247 21484 528 21227 32967;32968 42588;42589;42590 42588 3 YVSSLTEEISK Unmodified 1254.6343 0.63434802 1174 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 0 5 0 1 58.377 58.377 2 2.0626E-06 17237 TMT1-4 134.57 92.23 77.382 124.76 53.355 34.244 102.29 82.361 73 123 58 36 102 80 1 1 1 1 1 1 10933 21485 1174 21228 32969 42591 42591 1 YVTILHLPK Unmodified 1082.6488 0.64881629 671 P12544-2;P12544 GZMA Granzyme A yes no 0 0 0 0 0 9 0 1 57.206 57.206 3 0.003633 14570 TMT1-8 71.223 49.075 138.44 242.44 151.01 154.2 155.91 157.58 131 239 160 152 161 152 1 1 1 1 1 1 29268 21486 671 21229 32970 42592 42592 1 YVTTLLYKPI Unmodified 1209.7009 0.70091144 3008 Q9Y478;O43741-2;O43741 PRKAB1;PRKAB2 5'-AMP-activated protein kinase subunit beta-1;5'-AMP-activated protein kinase subunit beta-2 yes no 0 0 0 0 1 9 0 1 71.046 71.046 2 0.033502 20095 TMT1-8 78.149 47.964 30.514 51.238 57.952 35.389 26.868 53.599 29 51 58 36 29 51 1 1 1 1 1 1 5255.3 21487 3008 21230 32971 42593 42593 1 YVVGLIIK Unmodified 903.57934 0.57933974 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 9 0 1 67.368 67.368 2 0.00027132 18637 TMT1-8 129.16 75.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21488 121 21231 32972 42594 42594 1 YVVLSYLGLLSQEK Unmodified 1610.892 0.89195969 2567 Q9BXK5-2;Q9BXK5 BCL2L13 Bcl-2-like protein 13 yes no 0 0 0 0 0 9 0 1 85.996 85.996 3 5.3179E-13 25903 TMT1-8 132.79 109.44 61.887 26.079 36.149 20.802 57.902 52.714 58 29 36 22 58 51 1 1 1 1 1 1 6359.2 21489 2567 21232 32973 42595 42595 1 YVVVTGITPTPLGEGK Unmodified 1629.8978 0.89777334 657 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 0 8 0 1 65.909 65.909 3 1.7021E-06 19890 TMT1-7 91.969 84.56 38.084 58.443 41.926 44.53 56.555 60.214 36 58 44 44 58 58 1 1 1 1 1 1 10269 21490 657 21233 32974 42596 42596 1 YVWLVYEQDRPLK Unmodified 1707.8984 0.89844205 954 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 1 8 0 2 64.026 64.026 3;4 1.3971E-05 19199 TMT1-7 105.17 68.725 948.62 1267 895.23 970.06 968.22 1271.8 895 1265 942 953 1010 1219 4 4 4 4 4 4 165360 21491 954 21234 32975;32976 42597;42598;42599;42600 42600 4 YVYVVTELMK Unmodified 1243.6522 0.65224669 1256 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 0 8 0 1 74.442 74.442 3 0.00081871 23209 TMT1-7 93.649 47.652 30.685 44.158 35.207 21.115 44.292 22.188 29 44 36 22 44 22 1 1 1 1 1 1 3565.7 21492 1256 21235 32977 42601 42601 1 YWCAVLGQHHNYQNWR Unmodified 2130.9595 0.95949595 1969 Q5SQ64;Q5SQ64-2 LY6G6F Lymphocyte antigen 6 complex locus protein G6f yes no 0 0 0 0 0 9 0 1 51.222 51.222 4 1.4128E-08 12249 TMT1-8 106.32 76.151 122.64 197.95 139.25 115.47 160.75 251.25 116 196 145 116 167 240 2 2 2 2 2 2 12088 21493 1969 21236 32978 42602;42603 42602 2 YWCNDGK Unmodified 941.37015 0.3701516 1397 P61626 LYZ Lysozyme C yes yes 0 0 0 0 0 5.5 0.5 1 1 43.528 43.528 2 0.0018969 11524 TMT1-4 92.187 71.858 3242 7929.7 4378.3 3126.5 4347.1 5017.3 3083 7727 4630 3174 4458 4823 3 3 3 3 3 3 410390 21494 1397 21237 32979;32980 42604;42605;42606;42607 42604 4 YWEAFLPEAK Unmodified 1252.6128 0.61282471 235;1726 Q13596-2;Q13596;O60749-2;O60749 SNX1;SNX2 Sorting nexin-1;Sorting nexin-2 no no 0 0 0 0 0 7 0 2 73.959 73.959 2;3 0.0032026 23002 TMT1-6 77.662 50.548 146.34 157.74 157.49 121.83 171.52 142.21 138 160 160 123 174 138 2 2 2 2 2 2 40175 21495 1726;235 21238 32981;32982 42608;42609 42609 2 YWISAFPAEFDLNPELAEQIK Unmodified 2480.2264 0.22637771 2085 Q7LDG7;Q7LDG7-4;Q7LDG7-2;Q7LDG7-3 RASGRP2 RAS guanyl-releasing protein 2 yes no 0 0 0 0 0 6.67 0.471 1 2 90.576 90.576 3;4 3.4884E-11 29296 TMT1-6 103.17 81.97 155.13 142.62 135.15 132.61 134.09 151.81 146 146 139 131 139 146 5 5 5 5 5 5 56979 21496 2085 21239 32983;32984;32985 42610;42611;42612;42613;42614 42613 5 YWKPTGTPK Unmodified 1076.5655 0.56548059 2482 Q99685;Q99685-2 MGLL Monoglyceride lipase yes no 0 0 0 0 1 9 0 1 43.871 43.871 3 0.0034913 9404 TMT1-8 81.338 45.004 583.83 860.9 692.74 468.9 594.17 681.28 552 857 710 477 611 655 1 1 1 1 1 1 40271 21497 2482 21240 32986 42615 42615 1 YWLCAATGPSIK Unmodified 1365.6751 0.67510739 1478 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 0 9 0 1 63.717 63.717 2 1.1936E-08 17243 TMT1-8 136.96 79.911 30.521 58.813 50.275 27.479 64.924 52.513 29 58 51 29 65 51 1 1 1 1 1 1 15323 21498 1478 21241 32987 42616 42616 1 YWLEEAECR Unmodified 1254.5339 0.53392246 1328 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 0 4 0 1 55.515 55.515 2 0.0087836 16457 TMT1-3 90.601 71.929 37.756 88.832 71.219 50.45 55.733 76.228 36 87 73 51 58 73 1 1 1 1 1 1 11524 21499 1328 21242 32988 42617 42617 1 YWLFSDEVPGLFIEK Unmodified 1841.924 0.9239881 2879 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 0 8 0 1 90.595 90.595 3 1.1547E-05 29223 TMT1-7 92.457 76.822 30.814 35.884 20.49 22.569 13.605 30.526 29 36 22 22 15 29 1 1 1 1 1 1 4462.7 21500 2879 21243 32989 42618 42618 1 YWLSQCFDAK Unmodified 1316.586 0.58595803 2263 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B yes yes 0 0 0 0 0 8 0 1 64.585 64.585 3 0.0051802 19366 TMT1-7 72.434 41.003 217.89 214.48 166.57 246.51 254.41 181.42 205 218 177 239 260 177 1 1 1 1 1 1 24683 21501 2263 21244 32990 42619 42619 1 YWPLYGEDPITFAPFK Unmodified 1942.9505 0.9505372 1592 Q05209;Q05209-2;Q05209-3 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 yes no 0 0 0 0 0 8.33 0.471 2 1 88.015 88.015 3;4 4.3497E-07 28367 TMT1-7 101.3 82.939 138.75 165.59 164.28 154.03 122.91 174.51 131 167 168 152 130 167 4 4 4 4 4 4 33320 21502 1592 21245 32991;32992;32993 42620;42621;42622;42623 42620 4 YWPQEAGEYAVHVLCNSEDIR Unmodified 2535.1489 0.14887244 831 P21333-2;P21333 FLNA Filamin-A yes no 0 0 0 0 0 6 0.816 1 1 1 71.576 71.576 3 9.7875E-46 22514 TMT1-4 187.52 172.28 833.95 1046.3 877.57 680.88 941.47 1066.9 787 1050 901 687 965 1026 9 9 9 9 9 9 584010 21503 831 21246 32994;32995;32996 42624;42625;42626;42627;42628;42629;42630;42631;42632 42625 9 YWPTADGR Unmodified 964.44028 0.44028008 1274 P52788-2;P52788 SMS Spermine synthase yes no 0 0 0 0 0 6 0 1 46.214 46.214 2 0.044478 12669 TMT1-5 76.134 22.968 122.54 191.2 161.36 162.54 144.67 199.48 116 190 167 160 152 191 1 1 1 1 1 1 10718 21504 1274 21247 32997 42633 42633 1 YWYLGPLK Unmodified 1038.5539 0.55385327 1949 Q53H12 AGK Acylglycerol kinase, mitochondrial yes yes 0 0 0 0 0 9 0 1 69.766 69.766 2 0.0072426 19577 TMT1-8 114.54 70.404 68.868 102.88 60.151 82.135 91.456 90.132 65 102 65 80 94 87 1 1 1 1 1 1 9521.4 21505 1949 21248 32998 42634 42634 1 YYALCGFGGVLSCGLTHTAVVPLDLVK Unmodified 2909.482 0.48195724 1537 Q00325-2 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 0 0 0 0 0 9 0 1 84.512 84.512 4 4.1719E-13 25290 TMT1-8 75.184 53.984 93.452 100.93 77.774 50.729 78.241 90.509 88 102 80 52 80 87 2 2 2 2 2 2 17731 21506 1537 21249 32999 42635;42636 42635 2 YYASEIAGQTTSK Unmodified 1417.6725 0.67252444 1120 P45954-2;P45954 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 0 5 0 1 48.346 48.346 3 3.4399E-06 13362 TMT1-4 111.79 91.412 46.466 73.484 63.096 58.163 78.156 83.05 44 73 65 58 80 80 1 1 1 1 1 1 8076.6 21507 1120 21250 33000 42637 42637 1 YYAVNYPLR Unmodified 1157.5869 0.58694431 1717 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 0 6 0 1 52.424 52.424 2 0.023125 15111 TMT1-5 76.774 44.164 68.724 102.48 84.804 63.654 124.23 74.273 65 102 87 65 124 73 1 1 1 1 1 1 9794.8 21508 1717 21251 33001 42638 42638 1 YYDDTYPSVK Unmodified 1249.5503 0.55028404 1402 P61923-5;P61923;P61923-4 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 0 4.5 0.5 1 1 50.397 50.397 3 0.0017918 14395 TMT1-3 85.377 80.062 354.52 370.55 335.46 237.04 281.27 325.63 334 376 342 240 290 313 2 2 2 2 2 2 36066 21509 1402 21252 33002;33003 42639;42640 42639 2 YYDQICSIEPK Unmodified 1414.6439 0.64386684 2267 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 0 5 0 1 56.106 56.106 3 0.00059369 16373 TMT1-4 90.926 65.208 68.612 117.27 91.098 72.464 100.79 74.942 65 116 94 73 102 73 1 1 1 1 1 1 24615 21510 2267 21253 33004 42641 42641 1 YYEAADTVTQFDNVR Unmodified 1790.8111 0.81114318 2237 Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 0 0 3 0 1 59.143 59.143 3 0.0048795 18905 TMT1-2 57.288 38.557 61.34 94.709 70.062 65.824 55.575 60.242 58 94 73 65 58 58 1 1 1 1 1 1 8542.3 21511 2237 21254 33005 42642 42642 1 YYGGAEVVDEIELLCQR Unmodified 2012.9513 0.95134183 1006 P34897-3;P34897;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 0 4 0 1 77.152 77.152 3 1.1792E-13 24892 TMT1-3 117.37 105.76 23.012 59.332 49.538 44.184 50.801 45.454 22 58 51 44 52 44 2 2 2 2 2 2 9617.6 21512 1006 21255 33006 42643;42644 42643 2 YYGGGSEGGR Unmodified 1001.4203 0.42027292 713 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 0 0 0 3 0 1 28.559 28.559 2 1.4515E-20 6733 TMT1-2 196.77 180.57 115.61 144.76 103.43 117.68 156.3 134.12 109 145 109 116 159 130 2 2 2 2 2 2 21527 21513 713 21256 33007 42645;42646 42645 2 YYGGGYGSTQATFMVFQALAQYQK Unmodified 2678.2475 0.24752385 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 9 0 1 86.403 86.403 4 0.018034 26090 TMT1-8 32.227 15.921 54.292 33.913 43.692 36.091 34.714 37.385 51 36 44 36 36 36 1 1 1 1 1 1 2495.5 21514 409 21257 33008 42647 42647 1 YYGLQILENVIK Unmodified 1451.8024 0.8024164 121 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 0 8 0 1 82.903 82.903 3 2.5579E-09 26532 TMT1-7 146.16 104.12 138.89 174.61 133.32 108.22 158 127.68 131 175 138 109 160 124 2 2 2 2 2 2 21733 21515 121 21258 33009 42648;42649 42649 2 YYIAASYVK Unmodified 1076.5542 0.5542472 2319 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 0 8 0 1 56.257 56.257 2 1.2744E-25 16080 TMT1-7 173.23 137.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21516 2319 21259 33010 42650 42650 1 YYLNDLDR Unmodified 1070.5033 0.50327426 1211 P50148 GNAQ Guanine nucleotide-binding protein G(q) subunit alpha yes yes 0 0 0 0 0 3.5 0.5 1 1 51.699 51.699 2 0.00067092 14920 TMT1-3 114.89 75.231 84.413 170.4 95.493 94.781 120.69 105.29 80 167 102 94 123 102 1 1 1 1 1 1 35752 21517 1211 21260 33011;33012 42651;42652 42652 2 YYLTDNLTFSSIYALIQHYR Unmodified 2480.2376 0.23761109 750 P16885 PLCG2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 yes yes 0 0 0 0 0 9 0 1 88.336 88.336 3 0.019396 26800 TMT1-8 38.665 14.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21518 750 21261 33013 42653 42653 1 YYPTEDVPR Unmodified 1138.5295 0.52948901 1573 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 0 3 0 1 44.524 44.524 2 1.0431E-08 13091 TMT1-2 170.24 99.328 231.61 433.22 201.25 289.04 440.37 192.11 219 425 223 283 440 192 1 1 1 1 1 1 62017 21519 1573 21262 33014 42654 42654 1 YYSFFDLDPK Unmodified 1293.5918 0.59175492 2112 Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 0 6.2 2.79 1 1 1 1 1 74.451 74.451 2;3 0.00011427 23808 TMT1-5 112.75 97.776 3527.8 4647.1 4571 3333.6 4116.5 4147.6 3335 4663 4636 3370 4218 4001 8 8 8 8 8 8 631470 21520 2112 21263 33015;33016;33017;33018;33019 42655;42656;42657;42658;42659;42660;42661;42662 42657 8 YYSIASSSK Unmodified 1004.4815 0.48147619 746 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 0 7 0 1 44.963 44.963 2 0.014833 11560 TMT1-6 82.287 55.033 46.705 81.704 15.932 61.38 56.586 36.761 44 80 22 58 58 36 1 1 1 1 1 1 2388.2 21521 746 21264 33020 42663 42663 1 YYSLDELSEK Unmodified 1245.5765 0.57649879 2514 Q9BRF8;Q9BRF8-2 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes no 0 0 0 0 0 4 0 1 59.99 59.99 3 0.00046418 18211 TMT1-3 69.01 57.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21522 2514 21265 33021 42664 42664 1 YYTPVPCESATAK Unmodified 1485.681 0.68098063 1253 P51692 STAT5B Signal transducer and activator of transcription 5B yes yes 0 0 0 0 0 5 0 1 48.661 48.661 3 0.0023144 13543 TMT1-4 68.034 58.376 77.473 86.159 70.886 57.024 114.03 136.39 73 87 73 58 116 131 1 1 1 1 1 1 24452 21523 1253 21266 33022 42665 42665 1 YYTSASGDEMVSLK Unmodified 1549.697 0.69702463 545 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 0 6 0 1 56.777 56.777 3 1.2638E-06 16824 TMT1-5 88.087 66.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21524 545 21267 33023 42666 42666 1 YYTVFDRDNNR Unmodified 1461.6637 0.66369108 533 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 1 5 0 1 43.271 43.271 3 0.023995 11405 TMT1-4 58.476 40.905 99.331 161.53 120.47 54.332 100.05 120.8 94 160 123 58 102 116 1 1 1 1 1 1 19508 21525 533 21268 33024 42667 42667 1 YYTYLIMNK Unmodified 1207.5947 0.59473181 409 P01024 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2 yes yes 0 0 0 0 0 9 0 1 66.282 66.282 3 0.00049179 18208 TMT1-8 92.439 63.696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21526 409 21269 33025 42668 42668 1 YYVTIIDAPGHR Unmodified 1403.7197 0.7197494 1490 Q5VTE0;P68104;P68104-2 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 0 5.4 2.42 1 1 1 1 1 50.95 50.95 3 1.3419E-10 14350 TMT1-5 154.66 142.37 421.7 741.97 632.18 646.55 755.04 602.06 400 734 654 639 770 585 5 5 5 5 5 5 305860 21527 1490 21270 33026;33027;33028;33029;33030 42669;42670;42671;42672;42673;42674 42671 6 YYWGGQYTWDMAK Unmodified 1667.7079 0.70786408 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 0 0 0 7 2.77 1 1 2 2 69.828 69.828 2;3;4 6.5314E-07 21349 TMT1-7 116.03 105.74 1893.9 2494.9 1663.6 1561.2 2086.5 3098 1786 2491 1749 1555 2165 2962 6 6 6 6 6 6 271190 21528 438 21271 33031;33032;33033;33034;33035;33036 42675;42676;42677;42678;42679;42680;42681;42682;42683 42677 9 YYWGGQYTWDMAK Oxidation (M) 1683.7028 0.70277871 438 P02675 FGB Fibrinogen beta chain;Fibrinopeptide B;Fibrinogen beta chain yes yes 0 0 1 0 0 7.67 0.471 1 2 66.321 66.321 3 0.00067068 19324 TMT1-7 86.463 60.485 606.91 830.65 627.24 617.16 647.8 870.56 573 829 654 610 675 834 5 5 5 5 5 5 86254 21529 438 21271 33037;33038;33039 42684;42685;42686;42687;42688 42686 55 5