Raw file Experiment Fraction Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Fixed modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE106 Col-0 rep1 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22443 26873 0 36800 16946 0 19854 5732 4885 0 847 16 29 0 4.3 2927 1649229 20189 1.2 2464 12 92368 11935 11072 13 19 2568 22 + 0.6427 0.89995 0.38814 0.57216 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE107 Col-0 rep1 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 17336 42621 0 53084 32158 0 20926 12848 11752 0 1096 24 37 0 5.2 9589 1204531 37721 3.1 2276 6 100004 28096 27430 28 36 3435 12 + 0.58523 0.84273 0.36183 0.5409 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE108 Col-0 rep1 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 20302 32017 0 39907 24127 0 15780 9202 8514 0 688 23 35 0 4.4 6689 1365942 28282 2.1 1786 6.3 99035 21222 20710 21 31 2449 12 + 0.51614 0.75121 0.28761 0.4281 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE109 Col-0 rep2 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 20492 32272 0 43626 20918 0 22708 5833 5098 0 735 13 24 0 3.2 3396 1511870 26356 1.7 2214 8.4 94860 16780 15620 18 26 2639 16 + 0.57805 0.80766 0.34152 0.49866 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE110 Col-0 rep2 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 18201 39610 0 49268 29952 0 19316 10349 9460 0 889 21 32 0 4.6 7734 1270578 35238 2.8 2030 5.8 98075 26359 25546 27 36 3058 12 + 0.56511 0.8126 0.33737 0.49699 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE111 Col-0 rep2 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21015 30735 0 38135 23335 0 14800 8382 7737 0 645 22 33 0 4.4 5945 1377356 26888 2 2071 7.7 96147 20173 19656 21 28 2628 13 + 0.54252 0.78473 0.29035 0.42779 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE112 Col-0 rep3 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 20818 30901 0 41610 20192 0 21418 5285 4732 0 553 13 23 0 2.6 3117 1476366 25143 1.7 2334 9.3 86667 15932 14739 18 25 2729 17 + 0.62711 0.86427 0.36866 0.52845 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE113 Col-0 rep3 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 17495 42581 0 51881 33281 0 18600 12105 11080 0 1025 23 33 0 5.5 9086 1168583 38069 3.3 2258 5.9 97068 29194 28490 30 36 3409 12 + 0.60199 0.87285 0.36359 0.54601 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE114 Col-0 rep3 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22147 26498 0 32692 20304 0 12388 6644 6189 0 455 20 30 0 3.7 4728 1410102 23238 1.6 1821 7.8 91006 17587 17138 19 27 2244 13 + 0.52348 0.74207 0.26964 0.38934 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE115 4a2 rep1 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21722 28418 0 38411 18425 0 19986 5908 5146 0 762 15 28 0 3.8 3347 1522881 22505 1.5 2403 11 85418 14091 13157 16 23 2611 19 + 0.62546 0.87559 0.37384 0.54575 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE116 4a2 rep1 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19067 38181 0 47253 29109 0 18144 12546 11370 0 1176 27 39 0 6.5 9271 1204522 33372 2.8 2528 7.6 92790 25047 24477 27 34 3431 14 + 0.59643 0.86083 0.34702 0.51987 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE117 4a2 rep1 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22081 26561 0 32798 20324 0 12474 7547 7022 0 525 23 35 0 4.2 5313 1472553 23258 1.6 1873 8.1 98334 17547 17097 18 26 2296 13 + 0.52746 0.75182 0.27223 0.39839 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE118 4a2 rep2 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22106 26014 0 34702 17326 0 17376 4225 3844 0 381 12 22 0 2.2 2556 1538408 21340 1.4 2041 9.6 84360 13843 12674 16 24 2268 16 + 0.60718 0.85473 0.34278 0.49905 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE119 4a2 rep2 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 20106 33913 0 41348 26478 0 14870 9482 8717 0 765 23 33 0 5.1 7279 1297146 30151 2.3 2012 6.7 92284 23210 22512 25 33 2718 12 + 0.58059 0.83002 0.32549 0.47776 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE120 4a2 rep2 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 23627 20409 0 24791 16027 0 8764 4442 4289 0 153 18 27 0 1.7 3223 1508308 18075 1.2 1410 7.8 88225 14002 13541 16 24 1664 12 + 0.48495 0.6949 0.23822 0.34902 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE121 4a2 rep3 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22459 25460 0 34447 16473 0 17974 5322 4640 0 682 15 28 0 3.8 3009 1561829 20253 1.3 2102 10 81507 12661 11756 16 22 2281 18 + 0.59109 0.82433 0.34434 0.50103 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE122 4a2 rep3 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19672 36031 0 44089 27973 0 16116 12389 11323 0 1066 28 40 0 6.6 9316 1268732 31767 2.5 2331 7.3 93389 24244 23601 26 33 3155 13 + 0.59601 0.85886 0.345 0.51242 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE123 4a2 rep3 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22421 25401 0 31095 19707 0 11388 7268 6781 0 487 23 34 0 4.3 5263 1464873 22260 1.5 1870 8.4 92818 17054 16591 18 26 2217 13 + 0.5143 0.7304 0.26386 0.38146 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE124 dwa1,2 rep1 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22532 26335 0 36284 16386 0 19898 4965 4201 0 764 14 26 0 3.8 2414 1589058 19738 1.2 2381 12 80023 11481 10564 14 20 2451 21 + 0.59178 0.82124 0.34725 0.5049 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE125 dwa1,2 rep1 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19079 37872 0 46810 28934 0 17876 11109 10085 0 1024 24 35 0 5.7 8060 1234195 33060 2.7 2542 7.7 92948 24737 24105 27 34 3452 14 + 0.60204 0.86392 0.35822 0.53583 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE126 dwa1,2 rep1 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22628 24705 0 30458 18952 0 11506 6171 5778 0 393 20 30 0 3.4 4243 1508954 21456 1.4 1845 8.6 95029 16217 15753 17 25 2233 14 + 0.51931 0.73658 0.26536 0.38388 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE127 dwa1,2 rep2 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 20836 31948 0 43261 20635 0 22626 6195 5364 0 831 14 26 0 3.7 3257 1499979 24802 1.7 2780 11 86430 15280 14138 18 24 3062 20 + 0.64139 0.91092 0.38106 0.56664 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE128 dwa1,2 rep2 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 18877 39140 0 48752 29528 0 19224 12039 10929 0 1110 25 37 0 5.8 8661 1196644 33965 2.8 2627 7.7 93459 25201 24550 27 33 3565 14 + 0.61307 0.87517 0.35894 0.53241 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE129 dwa1,2 rep2 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21405 29514 0 36343 22685 0 13658 8403 7812 0 591 23 34 0 4.3 5696 1395158 25601 1.8 2098 8.2 95137 19357 18921 20 27 2679 14 + 0.5359 0.77064 0.28115 0.41741 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE130 dwa1,2 rep3 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22579 26328 0 36317 16339 0 19978 5103 4338 0 765 14 27 0 3.8 2416 1609003 19691 1.2 2476 13 82241 11368 10447 14 20 2562 23 + 0.61406 0.85674 0.36176 0.52592 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE131 dwa1,2 rep3 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19417 37073 0 45767 28379 0 17388 11127 10092 0 1035 24 36 0 6 8025 1244383 32255 2.6 2614 8.1 93414 24211 23565 26 33 3447 14 + 0.5894 0.84983 0.34685 0.51612 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE132 dwa1,2 rep3 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22543 25145 0 31314 18976 0 12338 6768 6294 0 474 22 33 0 3.8 4613 1490740 21489 1.4 1970 9.2 92977 16029 15596 17 25 2335 15 + 0.52244 0.74966 0.26751 0.39339 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE133 dwa1,2 YFP-AFP2 rep1 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22574 25153 0 34070 16236 0 17834 4338 3923 0 415 13 24 0 2.3 2387 1598293 19619 1.2 2307 12 80210 11985 10990 15 21 2425 20 + 0.61407 0.84771 0.35287 0.50985 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE134 dwa1,2 YFP-AFP2 rep1 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19837 35960 0 44437 27483 0 16954 11442 10339 0 1103 26 38 0 6.5 8538 1297175 31321 2.4 2518 8 92341 23541 22848 25 32 3252 14 + 0.61345 0.87994 0.35511 0.52479 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE135 dwa1,2 YFP-AFP2 rep1 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 22661 24881 0 30445 19317 0 11128 7033 6545 0 488 23 34 0 4.4 4991 1478078 21516 1.5 1971 9.2 91955 16431 15955 18 25 2332 14 + 0.53211 0.75834 0.27208 0.39377 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE136 dwa1,2 YFP-AFP2 rep2 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21960 28427 0 38565 18289 0 20276 6733 5751 0 982 17 31 0 4.8 3490 1624147 21166 1.3 2793 13 86261 12775 11874 15 21 2846 22 + 0.66529 0.91832 0.39728 0.58384 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE137 dwa1,2 YFP-AFP2 rep2 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 18759 39564 0 48360 30768 0 17592 14376 13078 0 1298 30 43 0 7.4 10659 1276648 34619 2.7 2660 7.7 100191 26378 25790 26 33 3674 14 + 0.61652 0.87598 0.3679 0.5416 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE138 dwa1,2 YFP-AFP2 rep2 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21666 28576 0 34932 22220 0 12712 9297 8556 0 741 27 39 0 5.8 6647 1413911 24735 1.7 2208 8.9 93374 18931 18454 20 27 2669 14 + 0.55258 0.7916 0.2949 0.43315 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE139 dwa1,2 YFP-AFP2 rep3 1 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 24355 20720 0 28667 12773 0 15894 4255 3709 0 546 15 29 0 3.4 2251 1647549 14902 0.9 2236 15 76818 8384 7798 11 17 2171 26 + 0.68153 0.95363 0.41104 0.6086 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE140 dwa1,2 YFP-AFP2 rep3 2 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 19149 37640 0 47193 28087 0 19106 11816 10676 0 1140 25 38 0 6 8199 1257722 32124 2.6 3017 9.4 90988 23220 22665 26 32 3878 17 + 0.621 0.88505 0.37384 0.55419 191017_C19_034_QHF1_Standard_Rev02_#19_045_GNE141 dwa1,2 YFP-AFP2 rep3 3 Trypsin/P Specific FALSE "Oxidation (M);Acetyl (Protein N-term)" Carbamidomethyl (C) FALSE FALSE 1 2 Standard 21496 29054 0 36295 21813 0 14482 8854 8114 0 740 24 37 0 5.1 6130 1417384 24844 1.8 2301 9.3 92133 18308 17849 20 27 2792 15 + 0.55501 0.79545 0.3012 0.44613 Total 755863 1112531 0 1414207 810855 0 603352 295533 268163 0 27370 21 33 0 4.5 23332 51052830 3280284 672811 647669 21 28 99625 15 0.58046 0.83033 0.33164 0.49339 20.54054054