Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS submitted	MS/MS submitted (SIL)	MS/MS submitted (ISO)	MS/MS submitted (PEAK)	MS/MS identified	MS/MS identified (SIL)	MS/MS identified (ISO)	MS/MS identified (PEAK)	MS/MS identified [%]	MS/MS identified (SIL) [%]	MS/MS identified (ISO) [%]	MS/MS identified (PEAK) [%]	Peptide sequences identified	Peaks	Peaks sequenced	Peaks sequenced [%]	Peaks repeatedly sequenced	Peaks repeatedly sequenced [%]	Isotope patterns	Isotope patterns sequenced	Isotope patterns sequenced (z>1)	Isotope patterns sequenced [%]	Isotope patterns sequenced (z>1) [%]	Isotope patterns repeatedly sequenced	Isotope patterns repeatedly sequenced [%]	Recalibrated	Av. absolute mass deviation [ppm]	Mass standard deviation [ppm]	Av. absolute mass deviation [mDa]	Mass standard deviation [mDa]	Label free norm param
210712_HAiyin_HL-2603_1	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		6915	14341	0	16782	11900	0	4882	1466	1406	0	60	8.7	12	0	1.2	1376	588042	13611	2.3	240	1.8	53513	11405	11076	21	29	452	4	+	0.51202	0.694	0.33269	0.46343	
210712_HAiyin_HL-2603_2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		6512	15335	0	17387	13283	0	4104	2508	2418	0	90	14	18	0	2.2	2354	589164	14808	2.5	142	0.96	55836	12922	12585	23	30	345	2.7	+	0.57707	0.79779	0.38389	0.54951	
210712_HAiyin_HL-2603_3	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		6965	13933	0	15935	11929	0	4006	1467	1404	0	63	9.2	12	0	1.6	1400	572080	13462	2.4	125	0.93	50268	11598	11297	23	30	319	2.8	+	0.5439	0.75579	0.3538	0.511	
210712_HAiyin_HL-2603_7	7	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		6030	16664	0	18627	14701	0	3926	4306	4130	0	176	23	28	0	4.5	3965	556203	16139	2.9	166	1	62994	14328	14023	23	29	350	2.4	+	0.59404	0.81803	0.41158	0.587	
210712_HAiyin_HL-2603_8	8	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		5986	16644	0	18472	14816	0	3656	4338	4171	0	167	23	28	0	4.6	3963	569912	16153	2.8	165	1	63979	14425	14082	23	28	368	2.6	+	0.59953	0.84497	0.40759	0.59387	
210712_HAiyin_HL-2603_9	9	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C)				False	False	1	2		Standard		5967	16629	0	18427	14831	0	3596	4324	4160	0	164	23	28	0	4.6	3979	567687	16116	2.8	184	1.1	64612	14392	14091	22	28	417	2.9	+	0.61063	0.85509	0.41715	0.60154	
Total																		38375	93546	0	105630	81460	0	24170	18409	17689	0	720	17	22	0	3	5947	3443088					351202	79070	77154	23	29	2251	2.8		0.5866	0.81708	0.3975	0.57281