Protein FDR Confidence	Accession	Description	MW [kDa]	SEQUEST Score		# Unique Peptides	# of Peptides		# of PSMs	
				IgG	FMRP		IgG	FMRP	IgG	FMRP
High	Q9UQ35	Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2	299.4		25.26	14		14		44
High	A0A075B6Z2	T-cell receptor alpha joining 56 (Fragment) OS=Homo sapiens GN=TRAJ56 PE=4 SV=1	2.2	0	1.64	1	1	1	2	18
High	P11940	Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2	70.6		29.19	6		12		15
High	Q13310	Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1	70.7		23.2	3		9		10
High	P02768	Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2	69.3	7.53	5.82	2	2	2	5	3
High	Q16630	Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2	59.2		13.86	3		3		8
High	Q8WWM7	Ataxin-2-like protein OS=Homo sapiens GN=ATXN2L PE=1 SV=2	113.3		5.4	3		3		7
High	P68363	Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1	50.1		5.93	2		2		3
High	P51114	Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3	69.7		7.06	1		3		3
High	Q96A08	Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3	14.2		0	1		1		3
High	P04406	Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3	36	2.35	0	1	1	1	2	1
High	P51116	Fragile X mental retardation syndrome-related protein 2 OS=Homo sapiens GN=FXR2 PE=1 SV=2	74.2		7.12	1		3		3
High	Q96PK6	RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2	69.4		6.91	3		3		3
High	P62979	Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=2	18	3.95	0	1	1	1	1	1
High	Q92841	Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=2	80.2		5.72	2		2		2
High	Q9UKF6	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	77.4		4.78	2		2		2
High	P06312	Immunoglobulin kappa variable 4-1 OS=Homo sapiens GN=IGKV4-1 PE=1 SV=1	13.4	1.74	2.1	1	1	1	1	1
High	A0A0B4J203	Uncharacterized protein OS=Homo sapiens PE=3 SV=1	94.6		1.76	2		2		2
High	Q06787	Synaptic functional regulator FMR1 OS=Homo sapiens GN=FMR1 PE=1 SV=1	71.1		4.56	2		2		2
High	O14497	AT-rich interactive domain-containing protein 1A OS=Homo sapiens GN=ARID1A PE=1 SV=3	241.9		0	1		1		2
High	O15027	Protein transport protein Sec16A OS=Homo sapiens GN=SEC16A PE=1 SV=3	233.4		3.61	2		2		2
High	Q8WZ42	Titin OS=Homo sapiens GN=TTN PE=1 SV=4	3813.7		0	1		1		2
High	Q15149	Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3	531.5	2.08	0	1	1	1	1	1
High	Q96PG2	Membrane-spanning 4-domains subfamily A member 10 OS=Homo sapiens GN=MS4A10 PE=2 SV=3	29.7	1.71		1	1		2	
High	P83731	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	17.8		1.98	1		1		1
High	Q8NFP9	Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3	327.6	0		1	1		1	
High	Q7Z5V6	Protein phosphatase 1 regulatory subunit 32 OS=Homo sapiens GN=PPP1R32 PE=1 SV=1	47.3		0	1		1		1
High	Q96HS1	Serine/threonine-protein phosphatase PGAM5, mitochondrial OS=Homo sapiens GN=PGAM5 PE=1 SV=2	32		2.34	1		1		1
High	Q16650	T-box brain protein 1 OS=Homo sapiens GN=TBR1 PE=2 SV=1	74		1.75	1		1		1
High	Q0VDD8	Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3	399.6		0	1		1		1
High	A0A087WW87	Immunoglobulin kappa variable 2-40 OS=Homo sapiens GN=IGKV2-40 PE=3 SV=2	13.3	2.33		1	1		1	
High	P11142	Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1	70.9		2.5	1		1		1
High	Q92499	ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2	82.4		0	1		1		1
High	P51532	Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2	184.5		1.73	1		1		1
High	P30050	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	17.8		0	1		1		1
High	P31025	Lipocalin-1 OS=Homo sapiens GN=LCN1 PE=1 SV=1	19.2	0		1	1		1	
High	P26378	ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2	41.7		2.77	1		1		1
High	Q7Z417	Nuclear fragile X mental retardation-interacting protein 2 OS=Homo sapiens GN=NUFIP2 PE=1 SV=1	76.1		0	1		1		1
High	P01871	Immunoglobulin heavy constant mu OS=Homo sapiens GN=IGHM PE=1 SV=4	49.4		0	1		1		1
High	Q16629	Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7 PE=1 SV=1	27.4		0	1		1		1
High	Q6PKG0	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	123.4		0	1		1		1
High	P01024	Complement C3 OS=Homo sapiens GN=C3 PE=1 SV=2	187		0	1		1		1
High	A0A0U1RRH7	Histone H2A OS=Homo sapiens PE=3 SV=1	18.5		0	1		1		1
High	Q10570	Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2	160.8		2.76	1		1		1
High	Q02413	Desmoglein-1 OS=Homo sapiens GN=DSG1 PE=1 SV=2	113.7		0	1		1		1
High	P62899	60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1	14.5		1.93	1		1		1
High	Q9Y2W1	Thyroid hormone receptor-associated protein 3 OS=Homo sapiens GN=THRAP3 PE=1 SV=2	108.6		2.36	1		1		1
High	Q5BKY9	Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV=1	28.4		0	1		1		1
High	Q3MHD2	Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2	21.7		0	1		1		1
High	Q96I24	Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2	61.6		0	1		1		1
High	P46776	60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2	16.6		2.7	1		1		1