Raw file	Experiment	Fraction	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
240_LF_45_63-1	45-63_1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8270	90384	0	105593	75175	0	30418	42372	41065	0	1307	40	55	0	4.3	22242	830694	71899	8.7	10154	14	106974	53384	52043	50	55	13012	24	+	0.39778	0.60365	0.27538	0.44071	
240_LF_45_63-2	45-63_2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8165	91016	0	105700	76332	0	29368	42096	40961	0	1135	40	54	0	3.9	22823	857886	74700	8.7	9336	12	111908	56189	54924	50	55	12571	22	+	0.40146	0.61144	0.2751	0.44422	
240_LF_45_63-3	45-63_3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8198	90053	0	106812	73294	0	33518	40200	39063	0	1137	38	53	0	3.4	22168	827763	74002	8.9	9268	13	105369	54237	52684	51	57	12160	22	+	0.38766	0.59513	0.26862	0.44036	
240_LF_45_63-4	45-63_4	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8238	90247	0	105088	75406	0	29682	41769	40570	0	1199	40	54	0	4	23231	845382	74638	8.8	9244	12	111140	56161	54798	51	55	12486	22	+	0.39846	0.60425	0.27336	0.44266	
240_LF_45-1	-45_1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8469	89581	0	103931	75231	0	28700	42427	41107	0	1320	41	55	0	4.6	22687	829763	72493	8.7	9815	14	109742	54516	53192	50	56	12755	23	+	0.38612	0.59031	0.26941	0.43895	
240_LF_45-2	-45_2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8192	90276	0	105763	74789	0	30974	41669	40372	0	1297	39	54	0	4.2	22487	841969	72722	8.6	9976	14	107673	53960	52525	50	55	12954	24	+	0.39765	0.61299	0.27708	0.45561	
240_LF_45-3	-45_3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8385	89450	0	104621	74279	0	30342	41890	40810	0	1080	40	55	0	3.6	22514	820282	71711	8.7	10142	14	105252	53173	51792	51	56	13215	25	+	0.39429	0.59624	0.27011	0.43301	
240_LF_45-4	-45_4	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8234	90758	0	105391	76125	0	29266	42896	41582	0	1314	41	55	0	4.5	23141	843220	72973	8.7	10046	14	109858	54810	53485	50	55	13029	24	+	0.39389	0.59204	0.27283	0.43581	
240_LF_64_74-1	64-74_1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8210	90404	0	106087	74721	0	31366	41671	40534	0	1137	39	54	0	3.6	22056	844930	73105	8.7	9903	14	107948	54131	52767	50	56	12877	24	+	0.38823	0.59192	0.26864	0.43674	
240_LF_64_74-2	64-74_2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8081	91082	0	106885	75279	0	31606	41819	40603	0	1216	39	54	0	3.8	22861	855141	74945	8.8	9320	12	110999	55878	54501	50	56	12533	22	+	0.39931	0.60849	0.27202	0.43638	
240_LF_64_74-3	64-74_3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8265	89962	0	105201	74723	0	30478	41257	40077	0	1180	39	54	0	3.9	22452	845539	73856	8.7	9333	13	108806	54956	53584	51	56	12539	23	+	0.39201	0.60014	0.26947	0.43898	
240_LF_64_74-4	64-74_4	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8209	90149	0	106205	74093	0	32112	39607	38403	0	1204	37	52	0	3.7	21458	840715	73571	8.8	9349	13	108698	54245	52797	50	56	12381	23	+	0.39448	0.59832	0.27131	0.43779	
240_LF_75-1	+75_1	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8276	89958	0	104142	75774	0	28368	43582	42396	0	1186	42	56	0	4.2	23687	859449	72770	8.5	10142	14	109633	54496	53270	50	55	13464	25	+	0.39739	0.60167	0.269	0.43251	
240_LF_75-2	+75_2	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8234	90190	0	105136	75244	0	29892	42574	41412	0	1162	40	55	0	3.9	23396	857484	73809	8.6	9262	13	111004	55377	54050	50	55	12428	22	+	0.3934	0.60389	0.2695	0.44119	
240_LF_75-3	+75_3	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8235	89895	0	105329	74461	0	30868	41095	39915	0	1180	39	54	0	3.8	22255	836107	72379	8.7	10180	14	104435	53100	51785	51	56	13420	25	+	0.39374	0.59686	0.26524	0.42433	
240_LF_75-4	+75_4	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (N-term);Carbamidomethyl (C);Deamidation (NQ);Gln->pyro-Glu;Glu->pyro-Glu	Carbamidomethyl (C)		Oxidation (M)	True	False	1	2		Standard		8223	89821	0	105292	74350	0	30942	41194	39991	0	1203	39	54	0	3.9	23701	830608	73001	8.8	9783	13	104589	53549	52436	51	56	13182	25	+	0.40451	0.61396	0.2697	0.43406	
240_Phospho_45_63-1	45-63_1	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7820	91241	0	116975	65507	0	51468	22651	21733	0	918	19	33	0	1.8	8903	746989	70247	9.4	9724	14	77671	41600	40749	54	59	13898	33	+	0.39112	0.60138	0.33464	0.55684	
240_Phospho_45_63-2	45-63_2	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7925	90700	0	116355	65045	0	51310	21249	20502	0	747	18	32	0	1.5	7589	761495	68573	9	10345	15	76904	40560	39608	53	58	14190	35	+	0.38817	0.59498	0.33376	0.55336	
240_Phospho_45_63-3	45-63_3	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7955	90391	0	114586	66196	0	48390	25404	24460	0	944	22	37	0	2	10818	783700	70255	9	10098	14	80190	43343	42170	54	60	14167	33	+	0.36318	0.55592	0.29622	0.49628	
240_Phospho_45_63-4	45-63_4	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8036	90176	0	115966	64386	0	51580	22070	21286	0	784	19	33	0	1.5	8010	749170	67252	9	10650	16	75172	39997	38944	53	59	14060	35	+	0.39246	0.60373	0.33563	0.55754	
240_Phospho_45-1	-45_1	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8496	88258	0	109883	66633	0	43250	24047	23186	0	861	22	35	0	2	9809	755248	68125	9	9988	15	81338	42831	41843	53	58	13905	32	+	0.36353	0.56453	0.30013	0.51019	
240_Phospho_45-2	-45_2	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7898	90856	0	114464	67248	0	47216	26331	25370	0	961	23	38	0	2	10907	762390	69556	9.1	10167	15	82018	43563	42555	53	59	14045	32	+	0.36659	0.56668	0.30227	0.50461	
240_Phospho_45-3	-45_3	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8101	89754	0	115103	64405	0	50698	23456	22630	0	826	20	35	0	1.6	9461	745148	67724	9.1	10390	15	76918	40913	39892	53	59	13721	34	+	0.38046	0.58466	0.31599	0.52792	
240_Phospho_45-4	-45_4	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8056	89937	0	115963	63911	0	52052	21683	20846	0	837	19	33	0	1.6	8305	777656	68354	8.8	10396	15	74969	40094	39155	53	59	14045	35	+	0.38217	0.58442	0.32074	0.53001	
240_Phospho_64_74-1	64-74_1	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7617	91942	0	118520	65364	0	53156	22195	21338	0	857	19	33	0	1.6	8341	742208	69543	9.4	10319	15	76151	41356	40360	54	60	14123	34	+	0.3793	0.58921	0.31927	0.53446	
240_Phospho_64_74-2	64-74_2	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7800	91174	0	117190	65158	0	52032	23746	22865	0	881	20	35	0	1.7	9245	756014	69086	9.1	10089	15	75938	41284	40386	54	59	14022	34	+	0.37141	0.5711	0.31431	0.52033	
240_Phospho_64_74-3	64-74_3	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8118	89677	0	113677	65677	0	48000	22615	21739	0	876	20	33	0	1.8	8453	758004	67794	8.9	10441	15	76471	40699	39736	53	59	14294	35	+	0.37026	0.56768	0.31257	0.51796	
240_Phospho_64_74-4	64-74_4	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8118	89733	0	116090	63376	0	52714	19161	18375	0	786	17	29	0	1.5	6642	750632	67252	9	10483	16	74474	38597	37641	52	57	14067	36	+	0.37693	0.58112	0.32406	0.53756	
240_Phospho_75-1	+75_1	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		8056	90098	0	114068	66128	0	47940	22963	22104	0	859	20	33	0	1.8	8868	759494	68628	9	10488	15	77778	41937	40917	54	59	14103	34	+	0.39928	0.61629	0.34077	0.57467	
240_Phospho_75-2	+75_2	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7805	91113	0	115184	67042	0	48142	26020	25074	0	946	23	37	0	2	10841	766884	69950	9.1	10191	15	80917	43195	42189	53	59	14195	33	+	0.37522	0.58056	0.30712	0.51794	
240_Phospho_75-3	+75_3	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7124	94041	0	118066	70016	0	48050	30414	29479	0	935	26	42	0	1.9	14478	779577	71963	9.2	10392	14	86870	46162	45433	53	57	13657	30	+	0.37306	0.57053	0.28749	0.47796	
240_Phospho_75-4	+75_4	1	Trypsin/P	Specific			False	Oxidation (M);Phospho (STY);Acetyl (N-term)	Carbamidomethyl (C)		Phospho (STY)	True	False	1	2		Standard		7908	90647	0	115097	66197	0	48900	27259	26305	0	954	24	40	0	2	12072	740597	69088	9.3	10224	15	79707	44061	42998	55	61	13498	31	+	0.37097	0.56411	0.2955	0.49094	
Total																			258717	2892964	0	3534363	2251565	0	1282798	1049382	1016153	0	33229	30	45	0	2.6	53712	25602138					2987514	1542354	1505209	52	57	428996	28		0.3891	0.59444	0.28499	0.46817