Raw file	Experiment	Fraction	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
WF-PD-9	WF-PD-9	1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3987	39943	0	42730	37156	0	5574	15367	15114	0	253	35.96	40.68	NaN	4.54	9175	666522	33619	5.04	4874	14.5	94723	26666	26179	28.15	32.39	7667	28.75	+	0.38518	0.55241	0.26784	0.39939	
WF-PD-10	WF-PD-10	2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3781	36796	0	39350	34242	0	5108	14355	14139	0	216	36.48	41.29	NaN	4.23	8906	606589	31163	5.14	4377	14.05	88977	24934	24408	28.02	32.36	7012	28.12	+	0.38818	0.55702	0.27012	0.40276	
WF-PD-11	WF-PD-11	3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3780	38919	0	43540	34298	0	9242	13849	13467	0	382	31.81	39.26	NaN	4.13	6934	585956	29934	5.11	5155	17.22	79136	22219	21552	28.08	32.63	6514	29.32	+	0.40791	0.58722	0.27559	0.41359	
WF-PD-12	WF-PD-12	4	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3926	39829	0	44605	35053	0	9552	12387	12008	0	379	27.77	34.26	NaN	3.97	6553	592202	31601	5.34	4998	15.82	80672	23384	22716	28.99	33.79	6951	29.73	+	0.44251	0.61426	0.30183	0.43504	
WF-WT1	WF-WT1	5	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3720	34929	0	40789	29069	0	11720	8570	8184	0	386	21.01	28.15	NaN	3.29	4075	517731	25537	4.93	4687	18.35	62983	17604	16935	27.95	33.49	5353	30.41	+	0.47453	0.63691	0.31433	0.44315	
WF-WT4	WF-WT4	6	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3943	41796	0	45162	38430	0	6732	14740	14506	0	234	32.64	37.75	NaN	3.48	8374	659538	34696	5.26	5236	15.09	92895	27062	26486	29.13	33.16	7957	29.4	+	0.40491	0.57182	0.2842	0.42076	
WF-WT5	WF-WT5	7	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3679	35236	0	39386	31086	0	8300	13471	13133	0	338	34.2	42.25	NaN	4.07	6724	530999	27327	5.15	4648	17.01	69490	20008	19491	28.79	33.85	6142	30.7	+	0.38298	0.54724	0.25861	0.38689	
WF-WT7	WF-WT7	8	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ);Gln->pyro-Glu;Dioxidation (MW)			False	False	1	2		Standard		3757	37357	0	42555	32159	0	10396	10001	9551	0	450	23.5	29.7	NaN	4.33	4454	562536	27371	4.87	4998	18.26	71801	19673	18931	27.4	32.89	5935	30.17	+	0.46551	0.63419	0.30724	0.43533	
WF-PD-10																																	8906																		
WF-PD-11																																	6934																		
WF-PD-12																																	6553																		
WF-PD-9																																	9175																		
WF-WT1																																	4075																		
WF-WT4																																	8374																		
WF-WT5																																	6724																		
WF-WT7																																	4454																		
Total																		30573	304805	0	338117	271493	0	66624	102740	100102	0	2638	30.39	36.87	NaN	3.96	16843	4722073					640677	181550	176698	28.34	33.02	53531	29.49		0.41101	0.58079	0.28112	0.41414