PDC000176: Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
https://cptac-data-portal.georgetown.edu/study-summary/S047
NCI-11pex-1H-Phos-JM05264

The AML Microenvironment Catalyzes a Step-wise Evolution to Gilteritinib Resistance
https://cptac-data-portal.georgetown.edu/study-summary/S062
PDC000318 (24)  PTRC_exp12_plex_01_P_f01 ~ PTRC_exp12_plex_04_P_f06

PDC000319 (18) PTRC_Ex8_FGF2_ref_plex2_P_f01

PDC000320 (12) PTRC_exp12_plex_05_P_f01 ~ PTRC_exp12_plex_06_P_f06


PDC000117: Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
https://cptac-data-portal.georgetown.edu/study-summary/S045


Number: 331043 | Target= 175352 | Decoy= 155691, 0.470 | max decoy score: 11.617
Threshold=6.544900 | FDR= 1.00 | Target= 17168 | Decoy= 171

#Multi-Stage:: 101025	84752	17168	20.256749103266 :: 88103 E:\deephos\u2os\msgf\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 313164 | Target= 162176 | Decoy= 150988, 0.482 | max decoy score: 11.617
Threshold=6.881600 | FDR= 0.99 | Target= 8961 | Decoy= 89

#Multi-Stage:: 146294	124133	8961	7.218870082894959 :: 105982 E:\deephos\u2os\fragpipe\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 306000 | Target= 158029 | Decoy= 147971, 0.484 | max decoy score: 11.617
Threshold=7.012900 | FDR= 0.99 | Target= 7192 | Decoy= 71

#Multi-Stage:: 128448	108939	7192	6.601859756377422 :: 113146 E:\deephos\u2os\comet_ev\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 288608 | Target= 146167 | Decoy= 142441, 0.494 | max decoy score: 10.259
Threshold=8.470700 | FDR= 0.98 | Target= 1123 | Decoy= 11

#Multi-Stage:: 147649	125869	1123	0.8921974433736662 :: 130538 E:\deephos\u2os\comet_percolator\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 288797 | Target= 146567 | Decoy= 142230, 0.492 | max decoy score: 11.617
Threshold=8.470700 | FDR= 0.99 | Target= 1416 | Decoy= 14

#Multi-Stage:: 148292	125428	1416	1.128934528175527 :: 130349 E:\deephos\u2os\frag_percolator\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 363732 | Target= 199299 | Decoy= 164433, 0.452 | max decoy score: 10.259
Threshold=6.204800 | FDR= 1.00 | Target= 32525 | Decoy= 325

#Multi-Stage:: 59706	42484	32525	76.55823368797665 :: 55414 E:\deephos\u2os\pfind\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@



//GBM
Number: 6237158 | Target= 3389299 | Decoy= 2847859, 0.457 | max decoy score: 11.159
Threshold=5.531700 | FDR= 1.00 | Target= 284465 | Decoy= 2844

#Multi-Stage:: 219429	185916	284465	153.00727210137913 :: 208139 E:\deephos\gbm\msgf\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 5863549 | Target= 3103892 | Decoy= 2759657, 0.471 | max decoy score: 11.159
Threshold=6.305200 | FDR= 1.00 | Target= 87703 | Decoy= 877

#Multi-Stage:: 621276	493480	87703	17.772351463078543 :: 581748 E:\deephos\gbm\fragpipe\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 6069282 | Target= 3262110 | Decoy= 2807172, 0.463 | max decoy score: 11.159
Threshold=5.722200 | FDR= 1.00 | Target= 197047 | Decoy= 1970

#Multi-Stage:: 400507	326918	197047	60.27413602187705 :: 376015 E:\deephos\gbm\comet_ev\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 5815614 | Target= 3064016 | Decoy= 2751598, 0.473 | max decoy score: 11.159
Threshold=6.724900 | FDR= 1.00 | Target= 52544 | Decoy= 525

#Multi-Stage:: 667536	544348	52544	9.652648673275184 :: 629683 E:\deephos\gbm\comet_percolator\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@

Number: 5859930 | Target= 3101817 | Decoy= 2758113, 0.471 | max decoy score: 11.159
Threshold=6.381900 | FDR= 1.00 | Target= 80750 | Decoy= 807

#Multi-Stage:: 624778	494654	80750	16.324542003097115 :: 585367 E:\deephos\gbm\frag_percolator\psm_fdr1.tsv
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@