Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
CON_CASA1;CON__P02662	115;115	CON_CASA1	CON_CASA1			IPI:CON_CASA1|SWISS-PROT:P02662 Alpha-S1-casein - Bos taurus (Bovine).	1	160.805	6.57312E-11	160.8	121.18	160.8		1	S	RLKKYKVPQLEIVPNSAEERLHSMKEGIHAQ	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXPPPPPPPPPPPPPPXXXXXXXXXXX	VPQLEIVPNS(1)AEER	VPQLEIVPNS(160)AEER	10	2	1.3729	7139100	7139100	0	0	NaN		+	0	4	115	115	1140	1206	1653	1959	1653	1959	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	13022	1653	1959	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	13022	1653	1959	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	13022
CON_CASA2;CON__P02663	143;143	CON_CASA2	CON_CASA2			IPI:CON_CASA2|SWISS-PROT:P02663 Alpha-S2-casein [Contains: Casocidin-1 - Bos taurus (Bovine).	0.840072	7.20854	0.00556924	90.412	67.834	90.412		1	S	LSTSEENSKKTVDMESTEVFTKKTKLTEEEK	X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX	TVDMES(0.84)T(0.16)EVFTK	T(-63)VDMES(7.2)T(-7.2)EVFT(-37)K	6	2	4.056	2861100	2861100	0	0	NaN		+	1	5	143	143	1067	1130	1541	1818	1541	1818	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	8525	1541	1818	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	8525	1541	1818	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	8525
O00567	519	O00567	O00567	Nucleolar protein 56	NOP56	sp|O00567|NOP56_HUMAN Nucleolar protein 56 OS=Homo sapiens OX=9606 GN=NOP56 PE=1 SV=4	0.491495	0	0.00439746	63.726	50.878	63.726			S	SKPKKKKSFSKEELMSSDLEETAGSTSIPKR	X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXPPPPPPPPPPPPPPPPPPPPPPPX	S(0.002)FS(0.009)KEELMS(0.491)S(0.491)DLEET(0.007)AGSTSIPK	S(-25)FS(-18)KEELMS(0)S(0)DLEET(-19)AGS(-36)T(-41)S(-41)IPK	9	3	1.72	0	0	0	0	NaN			2	20	519	519	924	978			1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422	1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422	1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422
O00567	520	O00567	O00567	Nucleolar protein 56	NOP56	sp|O00567|NOP56_HUMAN Nucleolar protein 56 OS=Homo sapiens OX=9606 GN=NOP56 PE=1 SV=4	0.491495	0	0.00439746	63.726	50.878	63.726			S	KPKKKKSFSKEELMSSDLEETAGSTSIPKRK	X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	S(0.002)FS(0.009)KEELMS(0.491)S(0.491)DLEET(0.007)AGSTSIPK	S(-25)FS(-18)KEELMS(0)S(0)DLEET(-19)AGS(-36)T(-41)S(-41)IPK	10	3	1.72	0	0	0	0	NaN			3	20	520	520	924	978			1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422	1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422	1320	1546	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11422
O76021;O76021-2	427;207	O76021	O76021	Ribosomal L1 domain-containing protein 1	RSL1D1	sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3;sp|O76021-2|RL1D1_HUMAN Isoform 2 of Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1	0.998016	27.2826	0.0104371	86.467	43.085	86.467		1	S	ASETPKAAESETPGKSPEKKPKIKEEAVKEK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXPPPPPPPPPPPPPXXXXXXXXXXXX	AAESET(0.002)PGKS(0.998)PEK	AAES(-39)ET(-27)PGKS(27)PEK	10	2	-1.7553	2890300	2890300	0	0	NaN			4	29	427	427	1	1	1	1	1	1	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	2418	1	1	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	2418	1	1	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	2418
Q14498-3;Q14498-2;Q14498	114;136;136	Q14498-3	Q14498-3	RNA-binding protein 39	RBM39	sp|Q14498-3|RBM39_HUMAN Isoform 3 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498-2|RBM39_HUMAN Isoform 2 of RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39;sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens OX=9606 G	1	92.5969	1.02393E-07	141.78	126.53	141.78		1	S	YRRRSRSKSPFRKDKSPVREPIDNLTPEERD	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPX	DKS(1)PVREPIDNLTPEER	DKS(93)PVREPIDNLT(-93)PEER	3	3	-0.88275	8236800	8236800	0	0	NaN			5	90	114	114	150	154	195	215	195	215	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	9168	195	215	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	9168	195	215	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	9168
Q96LW4-2;Q96LW4	488;489	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.493278	0	1.78352E-41	241.23	211.91	241.23			S	KEEEEFTTDEADETRSNETQNPHKPSPSRLS	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	EEEEFTTDEADET(0.493)RS(0.493)NET(0.013)QNPHKPSPSR	EEEEFT(-100)T(-87)DEADET(0)RS(0)NET(-16)QNPHKPS(-39)PS(-37)R	15	4	-1.1167	0	0	0	0	0			6	109	488	488	198;967	205;206;1023			293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457	293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457	293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457
Q96LW4-2;Q96LW4	498;499	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.87863	8.75012	2.56006E-16	216.17	193.7	91.457		1;2	S	ADETRSNETQNPHKPSPSRLSTGASADAVWD	X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	PPPPPPPPPPPPPPPPPPPXXXXXXXXXXXX	SNET(0.004)QNPHKPS(0.879)PS(0.117)R	S(-73)NET(-23)QNPHKPS(8.8)PS(-8.8)R	11	3	0.0071343	2522200000	2513700000	8428900	0	0.1681			7	109	498	498	198;967	205;206;1023	294;1393;1394;1395;1396;1397;1398;1399;1400	386;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663	1395	1655	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	3947	1394	1647	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	2436	1394	1647	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	2436
Q96LW4-2;Q96LW4	202;202	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.431832	0	0.0123379	41.661	26.615	41.661			S	NFLRKILQPALDLLGSEDDDSAPETTGHGFP	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXPPPPPPPPPPPPPPPPPPPPPPPPPP	ILQPALDLLGS(0.432)EDDDS(0.432)APET(0.068)T(0.068)GHGFPHFS(0.001)EAPAR	ILQPALDLLGS(0)EDDDS(0)APET(-8)T(-8)GHGFPHFS(-28)EAPAR	11	4	1.0887	0	0	0	0	0			8	109	202	202	467;521	488;544			649	786	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	17145	649	786	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	17145	649	786	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	17145
Q96LW4-2;Q96LW4	207;207	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.999771	37.1925	4.96661E-58	264.54	245.45	225.78		1	S	ILQPALDLLGSEDDDSAPETTGHGFPHFSEA	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP	KILQPALDLLGSEDDDS(1)APETTGHGFPHFSEAPAR	KILQPALDLLGS(-93)EDDDS(37)APET(-37)T(-44)GHGFPHFS(-90)EAPAR	17	4	-0.14971	236250000	236250000	0	0	0.014913			9	109	207	207	467;521	488;544	647;648;735;736	781;782;783;784;785;892;893;894	735	892	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	15514	647	783	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	16763	647	783	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	16763
Q96LW4-2;Q96LW4	26;26	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.805743	6.17849	0.0191133	65.295	42.203	65.295		1	S	QIEERASHYERKPLSSVYRPRLSKPEEPPSI	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X	XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX	KPLS(0.194)S(0.806)VYRPR	KPLS(-6.2)S(6.2)VY(-48)RPR	5	3	1.1275	14021000	14021000	0	0	0.027832			10	109	26	26	540	565	784	956	784	956	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5730	784	956	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5730	784	956	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5730
Q96LW4-2;Q96LW4	255;255	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	1	102.485	7.61762E-27	232.78	202.8	232.78		1	S	EESWTSNSKKLERLGSAEQSSPDLSFLVVKN	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPPPPPPPPPPPP	LGS(1)AEQSSPDLSFLVVK	LGS(100)AEQS(-100)S(-120)PDLS(-160)FLVVK	3	2	2.0596	171290000	171290000	0	0	0.0027225			11	109	255	255	609;610	637;640	873;874;876;877;878;879;880;883	1057;1058;1060;1061;1062;1063;1064;1067	874	1058	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	14058	874	1058	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	14058	874	1058	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	14058
Q96LW4-2;Q96LW4	259;259	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.535042	1.61193	0.00040138	100.67	89.817	100.67		1	S	TSNSKKLERLGSAEQSSPDLSFLVVKNNMGE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X	XXXXXXXXXPPPPPPPPPPPPPPPPPXXXXX	LGS(0.096)AEQS(0.535)S(0.369)PDLSFLVVK	LGS(-7.5)AEQS(1.6)S(-1.6)PDLS(-51)FLVVK	7	3	1.5222	76057000	76057000	0	0	0.0012088			12	109	259	259	609;610	637;640	875	1059	875	1059	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	15749	875	1059	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	15749	875	1059	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	15749
Q96LW4-2;Q96LW4	33;33	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	1	79.5043	0.00124695	101.39	80.085	88.101		1	S	HYERKPLSSVYRPRLSKPEEPPSIWRLFHRQ	X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX	LS(1)KPEEPPSIWR	LS(80)KPEEPPS(-80)IWR	2	2	-1.1249	27859000	27859000	0	0	0.0047033			13	109	33	33	677	708	963;964	1154;1155	963	1154	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11147	964	1155	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11148	964	1155	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	11148
Q96LW4-2;Q96LW4	486;487	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.493278	0	1.78352E-41	241.23	211.91	241.23			T	LFKEEEEFTTDEADETRSNETQNPHKPSPSR	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X	XXXPPPPPPPPPPPPPPPPPPPPPPPPPPPP	EEEEFTTDEADET(0.493)RS(0.493)NET(0.013)QNPHKPSPSR	EEEEFT(-100)T(-87)DEADET(0)RS(0)NET(-16)QNPHKPS(-39)PS(-37)R	13	4	-1.1167	0	0	0	0	NaN			14	109	486	486	198	205;206			293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457	293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457	293	385	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	5457
Q96LW4-2;Q96LW4	491;492	Q96LW4-2	Q96LW4-2	DNA-directed primase/polymerase protein	PRIMPOL	sp|Q96LW4-2|PRIPO_HUMAN Isoform 2 of DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL;sp|Q96LW4|PRIPO_HUMAN DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3	0.341818	1.02462	0.0196491	46.696	36.899	46.696			T	EEFTTDEADETRSNETQNPHKPSPSRLSTGA	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X	PPPPPPPPPPPPPPPPPPPPPPPPPPXXXXX	EEEEFT(0.074)T(0.191)DEADET(0.271)RS(0.3)NET(0.342)QNPHKPS(0.634)PS(0.188)R	EEEEFT(-8.8)T(-3.6)DEADET(-1.7)RS(-1)NET(1)QNPHKPS(5.7)PS(-5.7)R	18	4	-2.0141	0	0	0	0	0			15	109	491	491	198;967	205;206;1023			294	386	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	6043	294	386	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	6043	294	386	210823_11D_NCC_Shiotani_1_Dox+KRAS-_05uL	6043