useDetect = false
numThreads = 15
DiaNN = D:\Applications\FragPipe-20.0\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe
renamePin = 1
useRT = true
useSpectra = true
fragger = J:\MSFragger_process\Saitou-lab\240411ko\MSFragger_iBAQ\fragger.params
deletePreds = false
mzmlDirectory = J:\MSFragger_process\Saitou-lab\240411ko 
pinPepXMLDirectory = 240411ko03FL18_RAD21_IP_1_1_439\240411ko03FL18_RAD21_IP_1_1_439.pin 240411ko02SUDHL6_RAD21_IP_1_1_438\240411ko02SUDHL6_RAD21_IP_1_1_438.pin 240411ko04OCILy7_RAD21_IP_1_1_440\240411ko04OCILy7_RAD21_IP_1_1_440.pin 240411ko05KIS1_RAD21_IP_1_1_441\240411ko05KIS1_RAD21_IP_1_1_441.pin
useMultipleCorrelatedFeatures = false