useDetect = false
numThreads = 15
DiaNN = D:\Applications\FragPipe-20.0\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe
renamePin = 1
useRT = true
useSpectra = true
fragger = J:\MSFragger_process\Saitou-lab\240220ko\MSFragger_iBAQ\fragger.params
deletePreds = false
mzmlDirectory = J:\MSFragger_process\Saitou-lab\240220ko 
pinPepXMLDirectory = 240220ko08chromatin_WAPL_5_1_1_176\240220ko08chromatin_WAPL_5_1_1_176.pin 240120ko09Wapl_IP_2_1_1_40531\240120ko09Wapl_IP_2_1_1_40531.pin 240120ko08Wapl_IP_1_1_1_40530\240120ko08Wapl_IP_1_1_1_40530.pin 240220ko02whole_RAD21_1_1_1_170\240220ko02whole_RAD21_1_1_1_170.pin 240220ko03whole_RAD21_2_1_1_171\240220ko03whole_RAD21_2_1_1_171.pin 240220ko06chromatin_RAD21_4_1_1_174\240220ko06chromatin_RAD21_4_1_1_174.pin 240220ko09chromatin_WAPL_6_1_1_177\240220ko09chromatin_WAPL_6_1_1_177.pin 240220ko05chromatin_RAD21_3_1_1_173\240220ko05chromatin_RAD21_3_1_1_173.pin
useMultipleCorrelatedFeatures = false