Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS submitted	MS/MS submitted (SIL)	MS/MS submitted (ISO)	MS/MS submitted (PEAK)	MS/MS identified	MS/MS identified (SIL)	MS/MS identified (ISO)	MS/MS identified (PEAK)	MS/MS identified [%]	MS/MS identified (SIL) [%]	MS/MS identified (ISO) [%]	MS/MS identified (PEAK) [%]	Peptide sequences identified	Peaks	Peaks sequenced	Peaks sequenced [%]	Peaks repeatedly sequenced	Peaks repeatedly sequenced [%]	Isotope patterns	Isotope patterns sequenced	Isotope patterns sequenced (z>1)	Isotope patterns sequenced [%]	Isotope patterns sequenced (z>1) [%]	Isotope patterns repeatedly sequenced	Isotope patterns repeatedly sequenced [%]	Recalibrated	Av. absolute mass deviation [ppm]	Mass standard deviation [ppm]	Av. absolute mass deviation [mDa]	Mass standard deviation [mDa]	Label free norm param
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_093	OX_01	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5668	59489	0	91433	27543	0	63890	202	163	0	39	0.22	0.59	0	0.061	32	340199	39613	12	5292	13	29738	15695	13793	53	71	5494	35	+	0.30227	0.36819	0.18488	0.23408	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_098	RED_03	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5697	68975	0	103651	34299	0	69352	1469	1306	0	163	1.4	3.8	0	0.24	183	424965	45896	11	7122	16	33703	17069	15889	51	58	5860	34	+	0.30939	0.43576	0.22245	0.3315	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_097	GSH_02	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5979	58220	0	89669	26767	0	62902	184	146	0	38	0.21	0.55	0	0.06	32	401320	40025	10	4994	12	31304	15388	13737	49	63	5470	36	+	0.41016	0.61302	0.25078	0.39116	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_096	OX_02	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5703	66100	0	98179	34019	0	64160	1087	956	0	131	1.1	2.8	0	0.2	157	414802	44279	11	7232	16	33047	16808	15588	51	61	5559	33	+	0.34898	0.52123	0.25163	0.41505	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_095	RED_02	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5925	58293	0	85492	31094	0	54398	2161	1886	0	275	2.5	6.1	0	0.51	197	341924	40331	12	5702	14	29221	16720	15711	57	69	5304	32	+	0.36775	0.5121	0.27077	0.43942	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_100	GSH_03	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5903	49865	0	75883	23845	0	52038	2130	1854	0	276	2.8	7.8	0	0.53	311	314797	33320	11	4764	14	24503	12984	11851	53	70	4025	31	+	0.32798	0.50185	0.21759	0.3557	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_092	RED_01	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6368	54507	0	78928	30084	0	48844	2020	1711	0	309	2.6	5.7	0	0.63	226	332189	38718	12	5149	13	30467	17027	15958	56	68	5542	33	+	0.40704	0.56779	0.28263	0.42553	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_096	OX_02	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6453	59595	0	90865	28323	0	62542	190	142	0	48	0.21	0.5	0	0.077	35	393341	42279	11	4996	12	33901	17412	15074	51	72	5625	32	+	0.39386	0.50581	0.24411	0.3234	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_103	GSH_04	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5686	68502	0	102582	34422	0	68160	1203	1043	0	160	1.2	3	0	0.23	164	476293	46670	9.8	7029	15	36472	17391	16161	48	55	5844	34	+	0.39738	0.49376	0.3014	0.41731	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_102	OX_04	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5643	66633	0	99522	33742	0	65780	1117	961	0	156	1.1	2.8	0	0.24	158	439151	44706	10	7005	16	35299	16884	15699	48	57	5658	34	+	0.40108	0.51927	0.29067	0.41587	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_095	RED_02	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5655	67230	0	100300	34160	0	66140	1405	1270	0	135	1.4	3.7	0	0.2	161	378025	44408	12	7204	16	30544	16664	15496	55	64	5825	35	+	0.31353	0.46861	0.22567	0.35754	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_102	OX_04	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5686	59482	0	86411	32553	0	53858	2153	1824	0	329	2.5	5.6	0	0.61	357	355593	40881	11	5739	14	31547	17663	16584	56	66	5303	30	+	0.3357	0.48738	0.22965	0.38062	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_093	OX_01	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5783	61522	0	91609	31433	0	60176	906	795	0	111	0.99	2.5	0	0.18	149	377502	41207	11	6794	16	30289	15761	14591	52	62	5367	34	+	0.40658	0.53726	0.28921	0.41686	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_096	OX_02	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5797	60706	0	88129	33281	0	54848	1759	1386	0	373	2	4.2	0	0.68	209	372381	41220	11	5881	14	32131	17365	16434	54	65	5389	31	+	0.35767	0.50336	0.24923	0.38018	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_095	RED_02	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6419	60304	0	91980	28626	0	63354	142	118	0	24	0.15	0.41	0	0.038	34	471516	43712	9.3	4936	11	36026	17382	15513	48	62	5426	31	+	0.39605	0.52176	0.26839	0.36163	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_092	RED_01	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5772	70126	0	103707	36545	0	67162	1550	1357	0	193	1.5	3.7	0	0.29	174	391299	46608	12	7608	16	34141	18015	16801	53	61	6274	35	+	0.40968	0.52742	0.3085	0.42523	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_093	OX_01	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5675	58553	0	85100	32004	0	53096	1973	1659	0	314	2.3	5.2	0	0.59	311	378264	40733	11	5852	14	32639	17201	16198	53	65	5396	31	+	0.39484	0.52164	0.27231	0.39665	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_102	OX_04	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6288	64575	0	97139	32009	0	65130	134	112	0	22	0.14	0.35	0	0.034	32	529877	48153	9.1	5183	11	43914	20562	18020	47	60	5926	29	+	0.39996	0.54648	0.29819	0.5223	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_099	OX_03	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5577	65956	0	98449	33463	0	64986	1038	891	0	147	1.1	2.7	0	0.23	151	410342	44028	11	7385	17	32036	16150	14971	50	60	5635	35	+	0.39066	0.50905	0.27813	0.42791	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_094	GSH_01	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5585	67987	0	102290	33684	0	68606	1238	1125	0	113	1.2	3.3	0	0.16	165	430521	44802	10	7147	16	34168	16421	15191	48	59	5848	36	+	0.40326	0.51742	0.29657	0.41024	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_097	GSH_02	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5584	67934	0	101483	34385	0	67098	1278	1143	0	135	1.3	3.3	0	0.2	177	418306	44766	11	6994	16	33366	16933	15792	51	59	5820	34	+	0.30831	0.42601	0.23266	0.36273	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_101	RED_04	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5831	59428	0	90479	28377	0	62102	1406	1243	0	163	1.6	4.4	0	0.26	194	339792	38720	11	6206	16	25817	13842	12667	54	65	4982	36	+	0.29959	0.41427	0.22399	0.34052	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_c_PAP23_100	GSH_03	Chymotrypsin+h	Specific	Chymotrypsin	Specific	True	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	5		Standard		5619	67466	0	101758	33174	0	68584	1484	1346	0	138	1.5	4.1	0	0.2	236	434957	44496	10	6992	16	33284	16156	14917	49	58	5501	34	+	0.34141	0.49947	0.24865	0.3913	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_103	GSH_04	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6470	62899	0	95984	29812	0	66172	205	163	0	42	0.21	0.55	0	0.063	38	483807	44634	9.2	5072	11	39077	18311	16350	47	59	5810	32	+	0.43467	0.65094	0.26379	0.39832	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_101	RED_04	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6607	55463	0	86390	24536	0	61854	202	153	0	49	0.23	0.62	0	0.079	30	415396	38087	9.2	4853	13	30462	14120	12397	46	60	4893	35	+	0.37184	0.52316	0.24902	0.3593	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_094	GSH_01	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6415	57359	0	88295	26423	0	61872	201	173	0	28	0.23	0.65	0	0.045	34	387718	39059	10	4847	12	30633	15371	13620	50	67	5431	35	+	0.35484	0.46341	0.22091	0.29169	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_099	OX_03	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6019	63592	0	96886	30298	0	66588	217	166	0	51	0.22	0.55	0	0.077	34	472533	45333	9.6	5100	11	39873	18799	16785	47	59	5668	30	+	0.4313	0.63305	0.28778	0.46159	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_099	OX_03	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5864	57057	0	83624	30490	0	53134	1798	1539	0	259	2.2	5	0	0.49	230	346218	38971	11	5730	15	28766	15791	14811	55	66	5151	33	+	0.31986	0.45688	0.22782	0.36579	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_092	RED_01	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5500	56657	0	90661	22651	0	68010	214	195	0	19	0.24	0.86	0	0.028	35	318861	34844	11	5043	14	24526	12183	10468	50	67	4424	36	+	0.39825	0.57946	0.26116	0.39399	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_094	GSH_01	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6065	50516	0	76260	24772	0	51488	1786	1472	0	314	2.3	5.9	0	0.61	139	320192	33995	11	4982	15	24374	12835	11759	53	67	4339	34	+	0.36853	0.50359	0.26213	0.38881	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_098	RED_03	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6681	60997	0	93508	28484	0	65024	209	185	0	24	0.22	0.65	0	0.037	33	505530	43729	8.7	5079	12	39356	17210	15355	44	56	5461	32	+	0.3942	0.49234	0.25237	0.32788	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_098	RED_03	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6018	57259	0	84637	29881	0	54756	2119	1779	0	340	2.5	6	0	0.62	181	324565	38688	12	5665	15	28317	15481	14518	55	67	5308	34	+	0.38026	0.52007	0.26122	0.40113	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_a_PAP23_100	GSH_03	Proalanase	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6268	63978	0	97761	30193	0	67568	185	135	0	50	0.19	0.45	0	0.074	32	548741	45998	8.4	5039	11	45580	18651	16751	41	50	5732	31	+	0.39063	0.57299	0.24796	0.3887	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_103	GSH_04	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		6087	52413	0	79394	25432	0	53962	1621	1298	0	323	2	5.1	0	0.6	181	322612	34804	11	5036	14	25029	13495	12434	54	69	4393	33	+	0.34305	0.50757	0.23937	0.37263	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_097	GSH_02	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5947	53734	0	80199	27267	0	52932	1940	1681	0	259	2.4	6.2	0	0.49	241	311008	36049	12	5322	15	25705	14233	13193	55	70	4683	33	+	0.33036	0.46279	0.22743	0.35213	
230505_C23_013_OE480_PTM_Rev01_#23_014_JES_t_PAP23_101	RED_04	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamidomethyl (C);Glutatione C;Oxidation C;Di Oxidation C;Trioxidation (C)			Carbamidomethyl (C)	True	False	1	2		Standard		5902	61128	0	90872	31382	0	59490	2195	1897	0	298	2.4	6	0	0.5	220	336375	40242	12	6077	15	29027	15675	14675	54	66	5304	34	+	0.39224	0.57447	0.26753	0.43186	
Total																		214139	2194500	0	3299509	1089453	0	2210056	41121	35273	0	5848	1.2	3.2	0	0.26	891	14260912					1158282	585648	535752	51	62	193670	33		0.36103	0.50425	0.25501	0.39033