Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE410	NIL rep1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14378	3539	0	5333	1745	0	3588	740	611	0	129	14	35	0	3.6	40	1384479	844	0.061	576	68	101338	283	234	0.28	0.32	218	77	+	0.2005	0.28066	0.12744	0.18128	
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE411	NIL rep2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14595	2083	0	2942	1224	0	1718	347	334	0	13	12	27	0	0.76	22	1525318	519	0.034	353	68	119454	232	214	0.19	0.24	177	76	+	0.34316	0.4528	0.25586	0.36646	
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE412	NIL rep3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14548	2447	0	3540	1354	0	2186	393	356	0	37	11	26	0	1.7	32	1551322	575	0.037	398	69	130221	246	230	0.19	0.22	185	75	+	0.22988	0.33471	0.15135	0.26633	
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE413	dog1-1 rep1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14457	3049	0	4475	1623	0	2852	581	516	0	65	13	32	0	2.3	26	1448647	687	0.047	481	70	107436	234	207	0.22	0.27	179	76	+	0.18685	0.27624	0.11647	0.17229	
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE414	dog1-1 rep2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14644	1762	0	2479	1045	0	1434	451	390	0	61	18	37	0	4.3	20	1517140	423	0.028	268	63	117460	175	163	0.15	0.18	129	74	+	0.34742	0.57025	0.21495	0.33246	
240321_C24_007_OE480_PRM_GNE_2_#24_009_GNE416	dog1-1 rep3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Phospho (STY)	Carbamidomethyl (C)			False	False	1	2		Standard		14459	3042	0	4514	1570	0	2944	926	674	0	252	21	43	0	8.6	35	1449516	714	0.049	451	63	115065	270	257	0.23	0.29	195	72	+	0.30982	0.40191	0.2113	0.2818	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE410	NIL rep1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5903	69921	0	96518	43322	0	53196	2939	2898	0	41	3	6.7	0	0.077	2388	524511	61256	12	3137	5.1	70192	35239	32443	50	59	6236	18	+	0.34735	0.49121	0.23911	0.34736	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE411	NIL rep2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5754	71290	0	97598	44980	0	52618	2926	2869	0	57	3	6.4	0	0.11	2338	543199	61959	11	3072	5	74257	36198	33647	49	56	6694	18	+	0.38517	0.54538	0.26926	0.39932	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE412	NIL rep3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5611	72379	0	96652	48106	0	48546	4861	4748	0	113	5	9.9	0	0.23	3837	565850	63944	11	2647	4.1	82853	39704	37450	48	54	6630	17	+	0.38773	0.54733	0.27129	0.40158	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE413	dog1-1 rep1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5793	70930	0	97725	44131	0	53594	3224	3170	0	54	3.3	7.2	0	0.1	2613	530361	62251	12	2978	4.8	72211	35751	32875	50	58	6458	18	+	0.38839	0.56299	0.27092	0.41776	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE414	dog1-1 rep2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5838	70631	0	96702	44554	0	52148	3367	3297	0	70	3.5	7.4	0	0.13	2645	543209	61394	11	3050	5	73608	35862	33567	49	56	6615	18	+	0.39697	0.56584	0.28066	0.4188	
240321_C24_007_OE480_Thermo_Rev06_#24_009_GNE416	dog1-1 rep3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	False	1	2		Standard		5886	70153	0	93356	46950	0	46406	3874	3815	0	59	4.1	8.1	0	0.13	3194	541060	62594	12	2677	4.3	76975	38729	36451	50	58	6452	17	+	0.39398	0.56825	0.27437	0.41855	
Total																		121866	441226	0	601834	280604	0	321230	24629	23678	0	951	4.1	8.4	0	0.3	5326	12124612					1141070	222923	207738	20	23	40168	18		0.38348	0.54786	0.26777	0.40184